Query 003474
Match_columns 817
No_of_seqs 447 out of 3338
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 00:07:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003474.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003474hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02447 1,4-alpha-glucan-bran 100.0 2E-151 3E-156 1322.4 68.8 733 44-815 2-738 (758)
2 PLN03244 alpha-amylase; Provis 100.0 4E-125 9E-130 1075.0 55.9 625 138-811 85-870 (872)
3 KOG0470 1,4-alpha-glucan branc 100.0 1E-121 3E-126 1031.6 47.4 689 109-809 39-754 (757)
4 PLN02960 alpha-amylase 100.0 9E-120 2E-124 1052.0 60.2 656 138-811 82-895 (897)
5 PRK12568 glycogen branching en 100.0 1E-104 3E-109 927.2 55.1 590 157-808 108-729 (730)
6 PRK14706 glycogen branching en 100.0 8E-103 2E-107 915.3 56.5 576 168-809 19-623 (639)
7 PRK14705 glycogen branching en 100.0 5E-103 1E-107 952.0 53.8 588 156-808 603-1223(1224)
8 PRK12313 glycogen branching en 100.0 1.2E-95 3E-100 864.9 57.0 583 168-811 19-631 (633)
9 PRK05402 glycogen branching en 100.0 1.8E-95 4E-100 873.0 57.6 610 127-809 84-725 (726)
10 TIGR01515 branching_enzym alph 100.0 1.4E-94 3.1E-99 850.5 54.6 579 167-806 8-613 (613)
11 COG0296 GlgB 1,4-alpha-glucan 100.0 2E-94 4.2E-99 823.3 41.2 588 159-806 9-627 (628)
12 TIGR02104 pulA_typeI pullulana 100.0 1E-73 2.2E-78 673.9 46.3 509 175-765 11-601 (605)
13 TIGR02402 trehalose_TreZ malto 100.0 9.5E-72 2.1E-76 647.0 43.7 479 185-739 1-536 (542)
14 TIGR02100 glgX_debranch glycog 100.0 1.5E-69 3.3E-74 640.3 52.4 554 174-806 5-687 (688)
15 PRK03705 glycogen debranching 100.0 1.9E-68 4.2E-73 626.5 47.8 548 173-807 9-657 (658)
16 TIGR02102 pullulan_Gpos pullul 100.0 6E-68 1.3E-72 642.2 52.2 573 175-809 318-1006(1111)
17 TIGR02103 pullul_strch alpha-1 100.0 3E-64 6.4E-69 600.0 45.4 548 175-807 127-896 (898)
18 PLN02877 alpha-amylase/limit d 100.0 1.7E-61 3.7E-66 574.0 47.9 494 175-739 214-915 (970)
19 PRK14510 putative bifunctional 100.0 1E-60 2.2E-65 593.2 44.3 477 173-711 13-576 (1221)
20 PRK10785 maltodextrin glucosid 100.0 6.7E-58 1.5E-62 538.0 42.8 461 181-738 17-559 (598)
21 TIGR02456 treS_nterm trehalose 100.0 2E-57 4.4E-62 529.7 38.0 445 295-807 4-538 (539)
22 PRK10933 trehalose-6-phosphate 100.0 1.2E-55 2.5E-60 513.5 39.3 451 293-807 7-550 (551)
23 TIGR02403 trehalose_treC alpha 100.0 2.3E-55 5E-60 511.7 37.2 455 295-806 3-542 (543)
24 COG1523 PulA Type II secretory 100.0 4.4E-53 9.5E-58 491.4 41.1 551 173-808 17-692 (697)
25 PRK09505 malS alpha-amylase; R 100.0 1.2E-51 2.5E-56 484.4 33.9 365 292-737 185-681 (683)
26 PRK09441 cytoplasmic alpha-amy 100.0 1.3E-50 2.8E-55 466.9 33.8 375 314-805 19-478 (479)
27 PF00128 Alpha-amylase: Alpha 100.0 1.5E-45 3.3E-50 399.8 16.0 277 314-647 1-313 (316)
28 PLN00196 alpha-amylase; Provis 100.0 3.2E-43 7E-48 395.6 29.3 316 313-738 40-402 (428)
29 PLN02361 alpha-amylase 100.0 3.4E-41 7.4E-46 375.0 33.5 315 315-736 27-376 (401)
30 PRK13840 sucrose phosphorylase 100.0 2.5E-39 5.3E-44 365.8 28.7 375 313-738 16-467 (495)
31 TIGR03852 sucrose_gtfA sucrose 100.0 6.5E-40 1.4E-44 368.3 23.0 373 311-739 14-462 (470)
32 TIGR02455 TreS_stutzeri trehal 100.0 1.7E-37 3.7E-42 351.0 35.1 468 295-810 50-684 (688)
33 COG0366 AmyA Glycosidases [Car 100.0 2.6E-38 5.6E-43 367.5 26.9 402 297-739 1-485 (505)
34 PLN02784 alpha-amylase 100.0 1.1E-36 2.4E-41 354.7 29.8 327 297-735 499-865 (894)
35 KOG0471 Alpha-amylase [Carbohy 100.0 1.8E-34 3.9E-39 334.7 27.8 167 294-463 15-219 (545)
36 TIGR02401 trehalose_TreY malto 100.0 2E-31 4.4E-36 314.2 32.0 174 314-515 13-286 (825)
37 PRK14511 maltooligosyl trehalo 99.9 4.2E-26 9.2E-31 270.3 29.9 82 314-396 17-98 (879)
38 KOG2212 Alpha-amylase [Carbohy 99.9 3.5E-22 7.6E-27 208.0 25.4 381 315-764 38-465 (504)
39 smart00642 Aamy Alpha-amylase 99.9 2.3E-22 5.1E-27 199.5 9.9 93 301-394 1-97 (166)
40 cd02854 Glycogen_branching_enz 99.9 2.5E-21 5.4E-26 175.2 10.6 96 181-276 3-99 (99)
41 PF14872 GHL5: Hypothetical gl 99.8 6.7E-19 1.5E-23 196.5 24.0 307 174-519 26-439 (811)
42 PRK14507 putative bifunctional 99.8 1.8E-17 3.8E-22 208.1 20.2 92 296-394 743-834 (1693)
43 TIGR01531 glyc_debranch glycog 99.6 5.1E-14 1.1E-18 172.2 29.0 83 312-396 127-214 (1464)
44 COG3280 TreY Maltooligosyl tre 99.6 2.2E-14 4.7E-19 163.5 13.7 80 315-395 17-96 (889)
45 PF02922 CBM_48: Carbohydrate- 99.5 1.6E-14 3.4E-19 127.4 6.5 79 175-259 1-85 (85)
46 cd02860 Pullulanase_N_term Pul 99.4 2.9E-13 6.3E-18 123.2 9.3 92 176-279 1-97 (100)
47 cd02855 Glycogen_branching_enz 99.4 7.9E-13 1.7E-17 121.3 10.6 92 169-267 3-100 (106)
48 PF02806 Alpha-amylase_C: Alph 99.3 1.5E-12 3.3E-17 117.2 7.2 89 713-808 1-94 (95)
49 cd02856 Glycogen_debranching_e 99.3 5.7E-12 1.2E-16 115.4 9.1 81 175-263 1-91 (103)
50 cd02853 MTHase_N_term Maltooli 99.2 6.1E-11 1.3E-15 104.7 10.2 84 177-278 1-85 (85)
51 PRK05402 glycogen branching en 99.1 4.4E-11 9.6E-16 144.9 6.8 83 167-260 12-96 (726)
52 cd02852 Isoamylase_N_term Isoa 99.1 6E-10 1.3E-14 104.8 9.2 79 177-263 1-95 (119)
53 cd02858 Esterase_N_term Estera 98.9 2.2E-09 4.8E-14 94.7 7.8 67 183-261 6-72 (85)
54 cd02861 E_set_proteins_like E 98.9 3.1E-09 6.8E-14 93.1 8.0 55 184-247 3-57 (82)
55 cd02688 E_set E or "early" set 98.5 3.4E-07 7.4E-12 79.4 8.5 60 183-249 4-63 (83)
56 PF02638 DUF187: Glycosyl hydr 98.5 8.9E-07 1.9E-11 97.0 13.3 188 315-509 17-225 (311)
57 PF14701 hDGE_amylase: glucano 98.5 2E-07 4.3E-12 104.2 7.8 82 313-396 18-106 (423)
58 PF11941 DUF3459: Domain of un 98.4 1.3E-06 2.9E-11 77.5 8.9 83 693-805 1-89 (89)
59 PRK14508 4-alpha-glucanotransf 98.3 4.1E-05 9E-10 88.8 19.2 238 367-646 198-456 (497)
60 PF14871 GHL6: Hypothetical gl 98.1 1.8E-05 3.9E-10 75.7 9.8 125 322-458 4-132 (132)
61 PF02446 Glyco_hydro_77: 4-alp 98.0 2.2E-05 4.8E-10 91.5 10.1 196 312-521 13-342 (496)
62 cd02859 AMPKbeta_GBD_like AMP- 98.0 1.6E-05 3.4E-10 69.2 6.6 53 185-247 4-56 (79)
63 PLN02950 4-alpha-glucanotransf 98.0 0.0005 1.1E-08 85.0 21.6 192 129-343 102-308 (909)
64 PLN02635 disproportionating en 97.9 7.6E-05 1.6E-09 86.9 13.4 139 367-519 224-377 (538)
65 COG1649 Uncharacterized protei 97.9 0.00013 2.8E-09 81.7 13.2 181 315-509 62-268 (418)
66 PF02324 Glyco_hydro_70: Glyco 97.9 2.4E-05 5.1E-10 90.2 7.2 98 295-394 563-674 (809)
67 PRK14510 putative bifunctional 97.6 0.0021 4.6E-08 82.3 20.0 142 367-521 932-1084(1221)
68 PF02065 Melibiase: Melibiase; 97.6 0.0012 2.7E-08 74.5 14.8 134 317-462 58-195 (394)
69 cd06597 GH31_transferase_CtsY 97.3 0.0041 9E-08 69.2 15.2 141 315-462 22-189 (340)
70 cd06594 GH31_glucosidase_YihQ 97.3 0.00097 2.1E-08 73.5 9.8 136 315-460 21-166 (317)
71 cd06593 GH31_xylosidase_YicI Y 97.2 0.0048 1E-07 67.8 14.2 174 315-512 22-206 (308)
72 cd06592 GH31_glucosidase_KIAA1 97.2 0.002 4.4E-08 70.6 10.5 128 315-460 28-165 (303)
73 KOG3625 Alpha amylase [Carbohy 97.1 0.00058 1.3E-08 80.6 5.2 81 314-396 139-226 (1521)
74 PRK14507 putative bifunctional 97.0 0.02 4.2E-07 74.6 18.4 187 367-584 386-585 (1693)
75 PF02324 Glyco_hydro_70: Glyco 96.9 0.016 3.6E-07 67.6 15.0 128 425-582 144-298 (809)
76 TIGR00217 malQ 4-alpha-glucano 96.9 0.012 2.6E-07 68.8 13.6 141 367-520 212-367 (513)
77 cd06600 GH31_MGAM-like This fa 96.8 0.0044 9.6E-08 68.4 8.9 130 315-460 22-160 (317)
78 PF00150 Cellulase: Cellulase 96.7 0.029 6.3E-07 60.0 14.0 137 319-513 22-172 (281)
79 PF13200 DUF4015: Putative gly 96.5 0.026 5.7E-07 61.7 12.5 166 320-503 15-186 (316)
80 cd06591 GH31_xylosidase_XylS X 96.5 0.011 2.4E-07 65.3 9.7 130 315-460 22-159 (319)
81 PF13199 Glyco_hydro_66: Glyco 96.4 0.029 6.3E-07 65.9 12.5 126 322-461 122-269 (559)
82 PRK11052 malQ 4-alpha-glucanot 96.3 0.078 1.7E-06 64.2 15.8 187 367-584 355-554 (695)
83 cd06602 GH31_MGAM_SI_GAA This 96.3 0.024 5.1E-07 63.2 10.6 132 317-460 24-165 (339)
84 COG1640 MalQ 4-alpha-glucanotr 96.1 0.056 1.2E-06 62.7 12.6 90 367-462 210-308 (520)
85 PRK14582 pgaB outer membrane N 96.1 0.059 1.3E-06 64.8 13.2 134 315-461 332-469 (671)
86 cd06599 GH31_glycosidase_Aec37 96.0 0.013 2.8E-07 64.7 6.6 129 318-460 30-168 (317)
87 smart00632 Aamy_C Aamy_C domai 95.8 0.041 9E-07 48.0 7.9 71 719-806 6-78 (81)
88 cd06604 GH31_glucosidase_II_Ma 95.6 0.041 8.9E-07 61.3 9.0 129 315-460 22-159 (339)
89 PF01055 Glyco_hydro_31: Glyco 95.6 0.025 5.4E-07 65.3 7.1 132 316-461 42-181 (441)
90 PRK10426 alpha-glucosidase; Pr 95.5 0.16 3.4E-06 61.3 13.7 135 317-462 221-365 (635)
91 TIGR01370 cysRS possible cyste 95.4 0.068 1.5E-06 58.6 9.2 117 371-511 85-211 (315)
92 PF11852 DUF3372: Domain of un 94.9 0.043 9.3E-07 54.4 5.5 52 688-739 41-115 (168)
93 cd06562 GH20_HexA_HexB-like Be 94.3 0.85 1.8E-05 51.1 14.8 176 317-516 18-214 (348)
94 cd06595 GH31_xylosidase_XylS-l 94.2 0.18 3.9E-06 55.0 9.0 129 315-459 23-158 (292)
95 PRK10658 putative alpha-glucos 93.9 0.08 1.7E-06 64.1 6.0 126 318-460 284-418 (665)
96 cd06564 GH20_DspB_LnbB-like Gl 93.8 0.79 1.7E-05 50.8 13.2 162 316-514 16-203 (326)
97 cd06598 GH31_transferase_CtsZ 93.7 0.12 2.6E-06 57.1 6.2 132 315-459 22-163 (317)
98 cd02875 GH18_chitobiase Chitob 93.5 0.34 7.4E-06 54.5 9.6 85 370-507 67-152 (358)
99 cd02742 GH20_hexosaminidase Be 93.1 0.96 2.1E-05 49.6 12.2 167 315-514 14-194 (303)
100 PF07745 Glyco_hydro_53: Glyco 92.8 0.74 1.6E-05 51.0 10.6 147 321-511 27-174 (332)
101 cd06542 GH18_EndoS-like Endo-b 92.7 0.41 8.8E-06 51.0 8.5 64 365-458 49-112 (255)
102 COG1501 Alpha-glucosidases, fa 92.5 0.43 9.4E-06 58.6 9.2 86 371-462 325-417 (772)
103 KOG3625 Alpha amylase [Carbohy 92.4 4.6 0.0001 49.3 16.8 67 423-517 497-568 (1521)
104 cd05808 CBM20_alpha_amylase Al 91.3 0.54 1.2E-05 42.0 6.3 58 185-248 3-66 (95)
105 cd06601 GH31_lyase_GLase GLase 91.2 0.5 1.1E-05 52.5 7.2 108 316-460 23-133 (332)
106 cd06568 GH20_SpHex_like A subg 90.7 3.8 8.2E-05 45.6 13.5 167 315-513 16-197 (329)
107 cd06603 GH31_GANC_GANAB_alpha 90.7 0.39 8.5E-06 53.5 5.9 129 315-459 22-161 (339)
108 cd06545 GH18_3CO4_chitinase Th 90.7 2.1 4.4E-05 45.7 11.1 87 366-503 45-131 (253)
109 cd06565 GH20_GcnA-like Glycosy 89.8 4.4 9.6E-05 44.4 13.0 167 315-514 15-188 (301)
110 KOG1065 Maltase glucoamylase a 89.6 1.8 3.8E-05 52.6 10.2 132 314-460 308-448 (805)
111 PF14488 DUF4434: Domain of un 89.4 0.9 1.9E-05 45.4 6.5 65 322-390 24-88 (166)
112 PLN02763 hydrolase, hydrolyzin 89.2 0.8 1.7E-05 57.3 7.3 129 315-460 199-336 (978)
113 PF01120 Alpha_L_fucos: Alpha- 88.6 3.2 6.9E-05 46.5 11.0 150 321-512 94-244 (346)
114 cd06563 GH20_chitobiase-like T 88.5 8.4 0.00018 43.3 14.3 130 365-513 84-227 (357)
115 cd06589 GH31 The enzymes of gl 88.0 1.8 3.9E-05 46.5 8.3 94 314-461 21-117 (265)
116 smart00812 Alpha_L_fucos Alpha 87.5 8.5 0.00018 43.7 13.6 115 322-459 85-202 (384)
117 COG3280 TreY Maltooligosyl tre 87.3 0.46 9.9E-06 56.6 3.3 45 693-738 775-827 (889)
118 PF14883 GHL13: Hypothetical g 87.3 16 0.00035 39.5 14.5 167 321-509 20-189 (294)
119 cd06570 GH20_chitobiase-like_1 87.1 3.9 8.4E-05 45.1 10.3 120 317-449 18-146 (311)
120 cd06569 GH20_Sm-chitobiase-lik 86.6 3.3 7.2E-05 47.9 9.9 83 365-447 95-191 (445)
121 PF02449 Glyco_hydro_42: Beta- 86.5 1.9 4E-05 48.8 7.7 116 321-458 13-136 (374)
122 PF00686 CBM_20: Starch bindin 86.4 0.81 1.8E-05 41.1 3.8 60 185-250 4-73 (96)
123 PRK12568 glycogen branching en 85.1 2 4.4E-05 52.4 7.3 79 168-259 22-102 (730)
124 cd06547 GH85_ENGase Endo-beta- 84.5 2 4.3E-05 47.9 6.5 95 371-510 50-145 (339)
125 PF10438 Cyc-maltodext_C: Cycl 84.1 2 4.3E-05 37.3 4.9 21 719-739 7-31 (78)
126 cd05814 CBM20_Prei4 Prei4, N-t 83.8 2.2 4.8E-05 40.1 5.6 57 185-247 3-68 (120)
127 COG3867 Arabinogalactan endo-1 83.7 9.2 0.0002 41.2 10.5 153 318-510 63-219 (403)
128 cd05816 CBM20_DPE2_repeat2 Dis 83.5 4.6 0.0001 36.5 7.3 60 185-249 2-68 (99)
129 PF08533 Glyco_hydro_42C: Beta 82.8 3.8 8.2E-05 33.2 5.8 46 729-806 12-57 (58)
130 PLN02316 synthase/transferase 82.2 14 0.0003 47.0 13.2 47 295-343 586-633 (1036)
131 cd02871 GH18_chitinase_D-like 81.8 5.3 0.00012 44.0 8.5 61 365-458 58-118 (312)
132 COG3589 Uncharacterized conser 80.2 2 4.3E-05 47.0 4.2 53 322-390 20-72 (360)
133 cd02874 GH18_CFLE_spore_hydrol 79.5 12 0.00026 41.0 10.4 89 369-503 47-136 (313)
134 PLN03236 4-alpha-glucanotransf 78.5 4.5 9.7E-05 49.5 6.9 90 367-462 274-372 (745)
135 PRK14705 glycogen branching en 77.7 4.5 9.7E-05 52.2 6.9 81 169-259 516-598 (1224)
136 PF00728 Glyco_hydro_20: Glyco 76.6 2.7 5.9E-05 46.8 4.2 125 315-450 16-156 (351)
137 PF01301 Glyco_hydro_35: Glyco 76.2 2.7 5.9E-05 46.5 4.0 56 321-388 27-84 (319)
138 cd05809 CBM20_beta_amylase Bet 75.9 8.3 0.00018 34.8 6.4 61 184-250 4-73 (99)
139 PF10566 Glyco_hydro_97: Glyco 75.8 30 0.00064 37.4 11.5 64 315-388 30-94 (273)
140 COG2342 Predicted extracellula 75.6 21 0.00046 38.3 10.1 157 321-511 33-191 (300)
141 PF13204 DUF4038: Protein of u 75.3 5.4 0.00012 43.5 6.0 66 322-391 34-110 (289)
142 PLN02692 alpha-galactosidase 75.0 1.6E+02 0.0035 33.8 21.3 94 326-459 86-179 (412)
143 cd05467 CBM20 The family 20 ca 74.7 9 0.00019 34.0 6.3 60 185-249 2-69 (96)
144 cd05817 CBM20_DSP Dual-specifi 74.6 9.2 0.0002 34.6 6.4 57 185-247 2-64 (100)
145 cd06543 GH18_PF-ChiA-like PF-C 74.3 57 0.0012 35.7 13.5 93 325-458 19-112 (294)
146 cd02857 CD_pullulan_degrading_ 73.9 9.2 0.0002 35.0 6.4 64 174-248 11-82 (116)
147 PLN03236 4-alpha-glucanotransf 70.7 7.8 0.00017 47.4 6.3 59 311-370 77-139 (745)
148 COG1523 PulA Type II secretory 69.5 11 0.00024 45.9 7.2 84 183-266 67-155 (697)
149 PF03198 Glyco_hydro_72: Gluca 68.6 7.3 0.00016 42.6 4.9 48 322-392 57-104 (314)
150 PLN03059 beta-galactosidase; P 67.3 7 0.00015 48.2 5.0 55 322-386 63-117 (840)
151 cd00598 GH18_chitinase-like Th 67.0 66 0.0014 32.6 11.6 64 365-458 47-112 (210)
152 COG2730 BglC Endoglucanase [Ca 65.9 9.2 0.0002 43.8 5.4 59 320-388 75-137 (407)
153 PRK11052 malQ 4-alpha-glucanot 65.2 12 0.00026 45.7 6.5 64 310-374 158-224 (695)
154 cd05813 CBM20_genethonin_1 Gen 65.1 23 0.0005 31.6 6.8 56 185-247 3-64 (95)
155 PF14701 hDGE_amylase: glucano 63.8 14 0.00031 42.2 6.2 40 421-462 359-404 (423)
156 TIGR03849 arch_ComA phosphosul 62.9 14 0.0003 39.0 5.5 46 322-387 75-120 (237)
157 PF05913 DUF871: Bacterial pro 62.8 12 0.00026 42.0 5.5 59 315-390 12-70 (357)
158 PF09260 DUF1966: Domain of un 62.1 18 0.00038 32.4 5.3 70 720-809 5-83 (91)
159 PF03423 CBM_25: Carbohydrate 59.1 21 0.00045 31.6 5.2 34 193-226 17-55 (87)
160 PF03644 Glyco_hydro_85: Glyco 57.8 16 0.00034 40.4 5.2 93 371-510 46-140 (311)
161 PTZ00445 p36-lilke protein; Pr 55.9 24 0.00051 36.7 5.7 65 315-385 26-96 (219)
162 cd06548 GH18_chitinase The GH1 55.3 35 0.00076 37.6 7.5 29 430-458 105-133 (322)
163 TIGR03356 BGL beta-galactosida 54.1 31 0.00067 39.9 7.0 101 313-450 50-150 (427)
164 cd05811 CBM20_glucoamylase Glu 53.1 43 0.00094 30.4 6.6 60 185-250 9-78 (106)
165 cd02931 ER_like_FMN Enoate red 53.0 1.9E+02 0.0041 32.8 13.1 28 366-395 82-110 (382)
166 smart00636 Glyco_18 Glycosyl h 52.8 35 0.00077 37.6 7.1 56 430-503 87-142 (334)
167 cd02872 GH18_chitolectin_chito 52.4 31 0.00068 38.6 6.7 63 430-508 92-155 (362)
168 PF00724 Oxidored_FMN: NADH:fl 52.1 50 0.0011 36.8 8.1 24 366-389 79-102 (341)
169 PF13380 CoA_binding_2: CoA bi 51.6 19 0.00041 33.6 3.9 39 321-385 69-107 (116)
170 cd04747 OYE_like_5_FMN Old yel 51.1 1.4E+02 0.003 33.7 11.4 132 366-507 77-212 (361)
171 KOG0496 Beta-galactosidase [Ca 50.5 23 0.0005 42.3 5.2 58 321-388 52-109 (649)
172 COG1306 Uncharacterized conser 49.8 62 0.0013 35.1 7.7 132 317-461 76-220 (400)
173 cd06546 GH18_CTS3_chitinase GH 48.7 75 0.0016 34.0 8.5 67 362-458 54-120 (256)
174 cd04734 OYE_like_3_FMN Old yel 48.6 1.7E+02 0.0037 32.7 11.6 28 366-395 76-103 (343)
175 cd02929 TMADH_HD_FMN Trimethyl 48.6 1.7E+02 0.0037 33.1 11.7 124 365-504 81-214 (370)
176 cd02876 GH18_SI-CLP Stabilin-1 48.0 41 0.00089 37.0 6.6 59 430-504 88-147 (318)
177 PF02679 ComA: (2R)-phospho-3- 47.9 28 0.0006 37.0 4.9 48 321-388 87-134 (244)
178 PF00704 Glyco_hydro_18: Glyco 47.7 42 0.00092 36.8 6.7 64 431-511 96-164 (343)
179 PRK10605 N-ethylmaleimide redu 47.6 2.6E+02 0.0057 31.5 13.0 126 366-505 78-224 (362)
180 cd06549 GH18_trifunctional GH1 46.0 42 0.00091 36.7 6.2 54 429-503 83-137 (298)
181 cd04733 OYE_like_2_FMN Old yel 46.0 2E+02 0.0044 31.9 11.7 28 366-395 81-108 (338)
182 cd05815 CBM20_DPE2_repeat1 Dis 44.7 73 0.0016 28.6 6.6 58 185-248 2-68 (101)
183 cd02879 GH18_plant_chitinase_c 44.2 51 0.0011 36.0 6.5 53 430-502 88-141 (299)
184 PF02903 Alpha-amylase_N: Alph 43.7 43 0.00093 31.2 5.1 61 180-247 18-89 (120)
185 TIGR00433 bioB biotin syntheta 43.6 47 0.001 35.9 6.2 60 321-391 123-182 (296)
186 PRK13210 putative L-xylulose 5 42.9 39 0.00085 36.1 5.3 51 322-385 20-70 (284)
187 cd05820 CBM20_novamyl Novamyl 42.8 91 0.002 28.3 6.9 61 184-250 4-75 (103)
188 cd02932 OYE_YqiM_FMN Old yello 42.8 3.7E+02 0.008 29.8 13.2 68 321-395 33-103 (336)
189 PLN03231 putative alpha-galact 41.5 5.7E+02 0.012 28.9 14.5 141 317-459 21-185 (357)
190 cd02803 OYE_like_FMN_family Ol 41.5 1.2E+02 0.0026 33.3 9.0 87 366-460 76-164 (327)
191 PRK05628 coproporphyrinogen II 40.0 39 0.00084 38.2 4.9 66 320-395 107-173 (375)
192 TIGR01210 conserved hypothetic 39.6 43 0.00094 36.9 5.1 60 321-390 117-178 (313)
193 cd04735 OYE_like_4_FMN Old yel 38.2 3.5E+02 0.0076 30.3 12.2 129 366-504 77-208 (353)
194 PRK01060 endonuclease IV; Prov 38.1 63 0.0014 34.6 6.0 48 322-383 16-63 (281)
195 PRK08207 coproporphyrinogen II 38.1 61 0.0013 38.1 6.2 63 319-391 267-330 (488)
196 PF01212 Beta_elim_lyase: Beta 38.0 29 0.00063 37.9 3.4 23 365-387 143-165 (290)
197 PRK06256 biotin synthase; Vali 37.2 46 0.001 36.9 4.9 61 320-391 151-211 (336)
198 PRK09852 cryptic 6-phospho-bet 36.5 1.6E+02 0.0034 34.7 9.2 104 312-450 66-169 (474)
199 cd02877 GH18_hevamine_XipI_cla 36.3 5.9E+02 0.013 27.6 13.3 59 325-386 18-78 (280)
200 cd05818 CBM20_water_dikinase P 36.2 1.4E+02 0.003 26.5 6.9 58 185-250 4-66 (92)
201 PRK13523 NADPH dehydrogenase N 35.8 3.7E+02 0.0079 30.0 11.7 152 328-503 47-205 (337)
202 PLN02411 12-oxophytodienoate r 34.9 5.4E+02 0.012 29.3 13.1 28 366-395 86-113 (391)
203 PF07071 DUF1341: Protein of u 34.8 81 0.0017 32.4 5.6 43 321-383 138-180 (218)
204 cd05810 CBM20_alpha_MTH Glucan 34.2 88 0.0019 28.1 5.3 49 194-248 15-67 (97)
205 PRK07094 biotin synthase; Prov 34.1 60 0.0013 35.7 5.2 61 321-391 129-189 (323)
206 PRK10076 pyruvate formate lyas 33.8 98 0.0021 32.2 6.3 59 322-385 149-211 (213)
207 KOG2499 Beta-N-acetylhexosamin 33.5 1.8E+02 0.0038 33.9 8.5 30 365-394 248-278 (542)
208 TIGR00539 hemN_rel putative ox 32.4 85 0.0018 35.2 6.1 64 321-394 100-164 (360)
209 cd02930 DCR_FMN 2,4-dienoyl-Co 31.9 4.2E+02 0.0092 29.6 11.5 29 365-395 75-103 (353)
210 PRK09856 fructoselysine 3-epim 31.8 87 0.0019 33.3 5.8 48 322-384 17-64 (275)
211 PRK08255 salicylyl-CoA 5-hydro 31.3 4.3E+02 0.0093 33.0 12.5 133 366-505 474-616 (765)
212 PRK05904 coproporphyrinogen II 31.2 56 0.0012 36.7 4.3 63 321-393 103-166 (353)
213 COG0041 PurE Phosphoribosylcar 30.3 54 0.0012 32.2 3.3 52 315-388 14-65 (162)
214 COG0520 csdA Selenocysteine ly 30.0 45 0.00098 38.2 3.4 37 353-389 165-201 (405)
215 PRK08208 coproporphyrinogen II 29.5 61 0.0013 37.4 4.4 66 320-395 140-206 (430)
216 PRK15447 putative protease; Pr 28.9 1.1E+02 0.0024 33.5 6.1 52 314-385 15-66 (301)
217 PRK05692 hydroxymethylglutaryl 28.6 5.3E+02 0.012 28.0 11.2 59 367-460 120-179 (287)
218 TIGR00542 hxl6Piso_put hexulos 28.6 88 0.0019 33.5 5.2 50 322-384 20-69 (279)
219 COG1902 NemA NADH:flavin oxido 28.4 5E+02 0.011 29.3 11.2 128 366-505 82-214 (363)
220 KOG0259 Tyrosine aminotransfer 27.5 67 0.0015 36.2 3.9 30 365-394 217-246 (447)
221 PRK09249 coproporphyrinogen II 27.4 89 0.0019 36.3 5.2 66 320-395 150-216 (453)
222 KOG0256 1-aminocyclopropane-1- 26.8 62 0.0013 36.7 3.5 54 322-392 215-271 (471)
223 PRK08446 coproporphyrinogen II 26.6 1E+02 0.0022 34.5 5.4 63 321-393 98-161 (350)
224 cd02933 OYE_like_FMN Old yello 26.3 7.4E+02 0.016 27.6 12.1 28 366-395 76-103 (338)
225 PRK15452 putative protease; Pr 25.9 1.3E+02 0.0028 34.9 6.2 49 323-385 15-64 (443)
226 PLN02389 biotin synthase 25.8 1.4E+02 0.0031 33.9 6.3 60 321-391 178-237 (379)
227 PF01261 AP_endonuc_2: Xylose 25.7 43 0.00094 33.5 2.0 45 324-385 1-45 (213)
228 PRK13347 coproporphyrinogen II 25.6 94 0.002 36.1 5.0 65 320-394 151-216 (453)
229 PRK08599 coproporphyrinogen II 25.5 90 0.0019 35.2 4.8 64 321-394 100-164 (377)
230 PF15640 Tox-MPTase4: Metallop 25.3 64 0.0014 30.4 2.8 26 361-386 16-41 (132)
231 cd06544 GH18_narbonin Narbonin 24.6 1.8E+02 0.0039 31.1 6.6 56 434-512 97-152 (253)
232 PF12820 BRCT_assoc: Serine-ri 24.6 47 0.001 32.9 1.9 45 42-86 43-91 (165)
233 PRK05799 coproporphyrinogen II 24.5 1E+02 0.0022 34.7 4.9 65 320-394 98-163 (374)
234 PF11806 DUF3327: Domain of un 24.4 1.5E+02 0.0032 28.0 5.2 55 185-248 4-69 (122)
235 PRK05939 hypothetical protein; 24.0 87 0.0019 35.7 4.3 29 361-389 142-170 (397)
236 PRK09936 hypothetical protein; 23.8 1.3E+02 0.0028 32.7 5.2 51 322-388 42-93 (296)
237 cd05014 SIS_Kpsf KpsF-like pro 23.6 1.7E+02 0.0036 27.0 5.5 62 323-385 18-79 (128)
238 PRK05660 HemN family oxidoredu 23.4 1.4E+02 0.0031 33.7 5.9 65 321-395 107-172 (378)
239 TIGR00538 hemN oxygen-independ 23.1 1.1E+02 0.0024 35.6 4.9 65 320-394 150-215 (455)
240 PF09154 DUF1939: Domain of un 23.0 2.5E+02 0.0054 22.9 5.5 56 731-806 1-57 (57)
241 PRK09331 Sep-tRNA:Cys-tRNA syn 22.9 71 0.0015 36.1 3.3 30 361-390 169-198 (387)
242 PRK12928 lipoyl synthase; Prov 22.7 2E+02 0.0043 31.4 6.5 61 315-386 217-277 (290)
243 PRK07379 coproporphyrinogen II 22.7 84 0.0018 35.9 3.8 66 320-395 114-180 (400)
244 PRK05967 cystathionine beta-ly 22.7 97 0.0021 35.4 4.3 29 362-390 161-189 (395)
245 cd00609 AAT_like Aspartate ami 22.7 96 0.0021 33.6 4.2 53 324-392 125-177 (350)
246 PRK14581 hmsF outer membrane N 22.6 8.5E+02 0.019 30.0 12.3 127 321-458 337-466 (672)
247 COG1640 MalQ 4-alpha-glucanotr 22.6 1.6E+02 0.0034 34.9 5.9 75 295-372 16-92 (520)
248 cd00287 ribokinase_pfkB_like r 22.3 1.4E+02 0.003 29.5 4.9 52 323-389 42-93 (196)
249 TIGR03581 EF_0839 conserved hy 22.2 1.4E+02 0.003 31.1 4.7 42 321-382 138-179 (236)
250 PRK04302 triosephosphate isome 22.2 1.5E+02 0.0033 30.7 5.4 44 323-386 77-120 (223)
251 COG0134 TrpC Indole-3-glycerol 21.3 97 0.0021 33.1 3.6 22 366-387 142-163 (254)
252 PRK09028 cystathionine beta-ly 21.1 1.1E+02 0.0023 35.1 4.2 28 363-390 159-186 (394)
253 TIGR01324 cysta_beta_ly_B cyst 20.8 1.1E+02 0.0024 34.7 4.2 29 362-390 147-175 (377)
254 TIGR03471 HpnJ hopanoid biosyn 20.8 1.8E+02 0.0039 33.9 6.2 60 321-390 287-346 (472)
255 TIGR01211 ELP3 histone acetylt 20.6 1.1E+02 0.0024 36.4 4.2 61 320-390 205-265 (522)
256 cd00615 Orn_deC_like Ornithine 20.6 63 0.0014 35.0 2.2 27 363-389 166-192 (294)
257 PRK09058 coproporphyrinogen II 20.4 1.3E+02 0.0028 35.0 4.8 66 320-395 162-228 (449)
258 PF13754 Big_3_4: Bacterial Ig 20.4 1.3E+02 0.0028 23.9 3.4 33 213-251 6-38 (54)
259 cd06452 SepCysS Sep-tRNA:Cys-t 20.1 75 0.0016 35.3 2.7 29 362-390 151-179 (361)
260 PLN02808 alpha-galactosidase 20.1 1.1E+02 0.0024 34.8 4.0 94 327-460 63-156 (386)
No 1
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=100.00 E-value=1.6e-151 Score=1322.39 Aligned_cols=733 Identities=74% Similarity=1.275 Sum_probs=680.2
Q ss_pred CCCceeeCCCCCCCCCCccccccCCccccccccccccccccccccccccccccCCcccccCCccccchhhhhccCCCCCC
Q 003474 44 PSEKVLVPGSQSDDPSAVTDQLETPETVSEDIEVRNGIESLQMEDNENVEIEDHGPVTLQGKVSSEKSEVKREVGPRSIP 123 (817)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (817)
.+..+++|+++++..++++.+...+.......+........+++ .......++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~ 54 (758)
T PLN02447 2 LSEHVLSPDGLPDSAPSPSPAVDEPRPEDPGSPATEAPYPAKTE---------------------------DNSAAASPP 54 (758)
T ss_pred CccccccCCCcCCCCCCCCCCCCcCCCCCcccccccCCcccccc---------------------------cccccccCC
Confidence 35678899999999988888777777444433333222222111 111222678
Q ss_pred CCCCCCcceecCCCCccchHhHHHHHHHHHHHHHHHHhccCchhhhhcccccCCcEEeCCcEEEEEecCCcCEEEEEeec
Q 003474 124 PPGAGQNIYEIDPNLLGHRQHLDYRYGRYKQMCEDIDKYEGGLAAFSRGYEKFGFIRSDTGITYREWAPGAKSASLIGDF 203 (817)
Q Consensus 124 ~~~~~~~~~~~dp~l~~~~~~~~~R~~~~~~~~~~i~~~~g~l~~f~~~y~~lG~~~~~~gv~fr~WAP~A~~V~LvgdF 203 (817)
+|.++.+|+++||||+||+++|++|+.+|.+++++|++.+|||++|+++|++||+|+.++||+||||||+|++|+|+|||
T Consensus 55 ~~~~~~~~~~~d~~l~~~~~~~~~r~~~~~~~~~~i~~~~~~l~~f~~~y~~lGa~~~~~g~~FrvWAP~A~~V~LvGdF 134 (758)
T PLN02447 55 PPGDGLGIYEIDPMLEPYEDHLRYRYSRYRRRREEIEKNEGGLEAFSRGYEKFGFNRSEGGITYREWAPGAKAAALIGDF 134 (758)
T ss_pred CCCCcceeeecCcchhhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHhceeEEecCCEEEEEECCCCCEEEEEEec
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCCc-cccCCccceeeccCCCC--CCCceEEeCCCc
Q 003474 204 NNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGI-KDSIPAWIKFSVQAPGE--IPYNGIYYDPPE 280 (817)
Q Consensus 204 N~W~~~~~pm~r~~~GvWei~lp~~~~g~~~~~~g~~yk~~~~~~~g~-~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~ 280 (817)
|+|++..++|++.++|+|+++||+ .+|.++++||++|||+|.+.+|. .+++|||++++++.|++ ..+++++|||++
T Consensus 135 N~W~~~~~~M~~~~~GvWe~~ip~-~~g~~~~~~G~~Yky~i~~~~g~~~~r~dpya~~~~~~p~~~~~~~~svv~dp~~ 213 (758)
T PLN02447 135 NNWNPNAHWMTKNEFGVWEIFLPD-ADGSPAIPHGSRVKIRMETPDGRWVDRIPAWIKYAVQAPGEIGAPYNGVYWDPPE 213 (758)
T ss_pred CCCCCCccCceeCCCCEEEEEECC-ccccccCCCCCEEEEEEEeCCCcEEeecCchHheeeccCCccCCCCceEEeCCCC
Confidence 999999999999999999999999 88999999999999999998764 68999999999999875 368999999976
Q ss_pred cccccccCCCCCCCCCceEEEeecCCCCCCCCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCC
Q 003474 281 EEKYVFQHPQPKKPKSLRIYEAHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPS 360 (817)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~IYE~hv~~~~~~~~~G~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd 360 (817)
.++|.|++++++.+.+++|||+|||+|+.++++|+|+++++++|||||+|||||||||||++++++++|||++++||+|+
T Consensus 214 ~~~y~w~~~~~~~~~~~~IYE~Hvg~~~~~~~~gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~ 293 (758)
T PLN02447 214 EEKYVFKHPRPPRPAALRIYEAHVGMSSEEPKVNSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVS 293 (758)
T ss_pred CCCCCCCCCCCCCCCCCEEEEEeCCcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccc
Confidence 66899999888778899999999999998888999999998899999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCcEEEEeeeccccCCCccccCcCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHH
Q 003474 361 SRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLS 440 (817)
Q Consensus 361 ~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~l~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~l~~ 440 (817)
|+|||++|||+||++||++||+||||+|+||++.++.++++.|+|+...||+.+..++++.|++.+|||++++|++||++
T Consensus 294 ~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~ 373 (758)
T PLN02447 294 SRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLS 373 (758)
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEeccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHH
Confidence 99999999999999999999999999999999998877899999988889998888889999999999999999999999
Q ss_pred HHHHHHHhCCccEEEEecCCcccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCEEEEEecCCCCCCc
Q 003474 441 NARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTF 520 (817)
Q Consensus 441 ~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~~~v~~~~P~~~~IgE~~~~~p~~ 520 (817)
+++||++||||||||||+|++|+|.|||+...|+++|++|||+++|.+++.||+++|+.|++.+|++++|||+++++|.+
T Consensus 374 ~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~IAEd~s~~p~l 453 (758)
T PLN02447 374 NLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATDVDAVVYLMLANDLLHGLYPEAVTIAEDVSGMPTL 453 (758)
T ss_pred HHHHHHHHhCcccccccchhhhhccccCcccccccCcccccCCccChHHHHHHHHHHHHHHHhCCCeEEEEEcCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcccchhhhHHHHHHHHHHHhh-cchhhhhhhhHHhhccCcccccceecccCccccccCccchhhhccChhHH
Q 003474 521 CIPVQDGGVGFDYRLQMAIADKWIELLKK-RDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMY 599 (817)
Q Consensus 521 ~~~~~~gglgFD~~l~~~~~d~~~~~l~~-~~~~~~~~~l~~~l~~~~~~~~~v~y~esHD~~r~g~~t~~~~~~~~~~~ 599 (817)
|+|+.+||+||||+|+|+|++.|+++++. .++.|.++.|.++++++++.+++|.|++||||+++|++|+++|+|+++||
T Consensus 454 ~~p~~~GGlGFDykw~Mg~~~~~l~~l~~~~d~~~~~~~l~~sl~~r~~~E~~I~y~eSHDevv~Gkksl~~~l~d~~my 533 (758)
T PLN02447 454 CRPVQEGGVGFDYRLAMAIPDKWIELLKEKRDEDWSMGDIVHTLTNRRYTEKCVAYAESHDQALVGDKTIAFWLMDKEMY 533 (758)
T ss_pred cccCCCCcCCcceEECCccchHHHHHHhhCCCcccCHHHHHHHHhcccccCceEeccCCcCeeecCcchhHhhhcchhhh
Confidence 99999999999999999999999999995 68999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCChhhhHHHHHHHHHHHHHHhCCCCceEeecccccCCCCCCCCCCCCCCCCCCCcCCCCCCCCcccccccCC
Q 003474 600 DFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDL 679 (817)
Q Consensus 600 ~~~~~~~~~~~~~~~~~al~kla~~l~ltlpG~p~l~y~G~E~G~~e~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w 679 (817)
++|+++.+.++++.|+++++||++++||++||.++|||||+||||++|+|||+ .+|+++++++|++|++
T Consensus 534 ~~m~~~~~~~~~~~R~~~lhkmirl~~~~~pG~g~L~FMGnEFg~~ew~Dfpr-----------~~n~ws~~~~~~~W~L 602 (758)
T PLN02447 534 DGMSTLTPATPVVDRGIALHKMIRLITMALGGEGYLNFMGNEFGHPEWIDFPR-----------EGNGWSYDKCRRRWDL 602 (758)
T ss_pred hcCCCChhhhhhHHHHHHHHHHHHHHHHhCCCCcceeecccccCCchhccCcc-----------cccccCcccccCCccc
Confidence 99999999999999999999999999999999989999999999999999999 4999999999998888
Q ss_pred CccccccchHHHHHHHHHHHHHHHhCCCCCCcEEEeeecCCCcEEEEEcCcEEEEEEcCCCCcccceEEcccCCCceEEE
Q 003474 680 GDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFERGNLVFVFNFHWNSSYSDYRVGCLKPGKYKIV 759 (817)
Q Consensus 680 ~~~~~~~~~~l~~f~r~Li~LR~~~~~l~~g~~~i~~~~~~~~Vlaf~R~~llvV~Nf~~~~~~~~~~i~v~~~g~~~~v 759 (817)
.+.+.++++.|.+|+|+|++|++++++|..+++|+.+.+++++||||+|..+||||||||++++.+|+|+||.+|+|+++
T Consensus 603 ~d~~~l~~~~l~~f~~~L~~l~~~~~~L~~~~~~i~~~d~~~~Viaf~R~~ll~V~NF~p~~s~~~Y~igvp~~G~y~~i 682 (758)
T PLN02447 603 ADADHLRYKFLNAFDRAMMHLDEKYGFLTSEHQYVSRKDEGDKVIVFERGDLVFVFNFHPTNSYSDYRVGCDKPGKYKIV 682 (758)
T ss_pred cCCCchhhhHHHHHHHHHHHHHhcCccccCCCceeeeecCCCCEEEEEeCCeEEEEeCCCCCCCCCcEECCCCCCeEEEE
Confidence 77666789999999999999999999999999999999999999999999999999999877999999999999999999
Q ss_pred EcCCCCCcCCccccCCCcceeccccccCCCCeEEEEEEcCceEEEEEEeCCccCCC
Q 003474 760 LDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYALADEEEQPL 815 (817)
Q Consensus 760 l~sd~~~~gG~~~~~~~~~~~~~~~~~~~~~~~i~l~lpp~s~~Vl~~~~~~~~~~ 815 (817)
||||+..|||+++++....+.+.+.+|++++++++|+|||++++||++.+..+++.
T Consensus 683 lnSD~~~fGG~~~~~~~~~~~~~~~~~~~~~~s~~v~iP~~~~~vl~~~~~~~~~~ 738 (758)
T PLN02447 683 LDSDAWEFGGFGRVDHDADHFTPEGNFDNRPHSFMVYAPSRTAVVYAPVDEDDEPA 738 (758)
T ss_pred ECCCchhcCCCCccCCCccEEecccCcCCCCcEEEEEeCCceEEEEEECCcccccc
Confidence 99999999999998866678888889999999999999999999999987665543
No 2
>PLN03244 alpha-amylase; Provisional
Probab=100.00 E-value=4.1e-125 Score=1075.01 Aligned_cols=625 Identities=40% Similarity=0.797 Sum_probs=583.0
Q ss_pred CccchHhHHHHHHHHHHHHHHHHhccCchhhhhcccccCCcEEeCC-cEEEEEecCCcCEEEEEeecCCCCCcccc----
Q 003474 138 LLGHRQHLDYRYGRYKQMCEDIDKYEGGLAAFSRGYEKFGFIRSDT-GITYREWAPGAKSASLIGDFNNWNPNADI---- 212 (817)
Q Consensus 138 l~~~~~~~~~R~~~~~~~~~~i~~~~g~l~~f~~~y~~lG~~~~~~-gv~fr~WAP~A~~V~LvgdFN~W~~~~~p---- 212 (817)
-+.|++.+++||+..++++.+|.+++++|..|+++|++||+|++.+ +++|++|||+|+..+||||||+|+++++.
T Consensus 85 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~g~~r~~~~~~~~~ewapga~~~~~~gdfn~w~~~~~~~r~~ 164 (872)
T PLN03244 85 DKIFAQFLRERHKALKDLKDEIFKRHFDFQDFASGFEILGMHRHMEHRVDFMDWAPGARYCAIIGDFNGWSPTENAAREG 164 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHhhhhhhhhccccCcccCceeEeecCCcceeeeeccccCCCccccccccc
Confidence 5789999999999999999999999999999999999999999986 79999999999999999999999999876
Q ss_pred -cccCCCceEEEEeCCCC--------------------------------------------------------------
Q 003474 213 -MTQNEFGVWEIFLPNNA-------------------------------------------------------------- 229 (817)
Q Consensus 213 -m~r~~~GvWei~lp~~~-------------------------------------------------------------- 229 (817)
|.++++|+|+|.|+..+
T Consensus 165 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (872)
T PLN03244 165 HFGHDDYGYWFIILEDKLREGEEPDELYFQQYNYVDDNDKGDSGVSAEEIFKKANDEYWEPGEDRFIKNRFEVAAKLYEQ 244 (872)
T ss_pred cccccccceEEEEechhhhcCCCchhhhHhhhccccccccCcCCCCHHHHHHHhhhhhcCCchhhHHHhHHHHHHHHHHH
Confidence 66999999999995431
Q ss_pred ---------------------------------------------C--C-------------------------------
Q 003474 230 ---------------------------------------------D--G------------------------------- 231 (817)
Q Consensus 230 ---------------------------------------------~--g------------------------------- 231 (817)
+ |
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (872)
T PLN03244 245 IFGPNGPETEEELEDIPDAETRYKAWKEEHKDDPPSNLPPCDIIDKGQGKEYDIFNVVDDPEWREKFRAKEPPIAYWLES 324 (872)
T ss_pred hhCCCCccchhhhccCcchHHHHHhhhhhcccCChhcCCCeEeeecCCCcccceeeeccCHHHHHHhhccCCChhhHHHh
Confidence 0 1
Q ss_pred -----------CCCCCCCCEEEEEEeCCCCccccCCccceeeccCCCCCCCceEEeCCCccccccccCCCCCCCCCceEE
Q 003474 232 -----------SPPIPHGSRVKIHMDTPSGIKDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHPQPKKPKSLRIY 300 (817)
Q Consensus 232 -----------~~~~~~g~~yk~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~IY 300 (817)
.++|+||++||+++.+++|..+|+|+|+++++|++....|++++|+|+..++|.|++++|++|..++||
T Consensus 325 ~~~~~~w~~~~~~~i~H~s~~k~~~~~~~g~~~RiPaw~~~~~~~~~~~~~~~~~w~P~~~~~y~~k~~~p~~p~~lrIY 404 (872)
T PLN03244 325 RKGRKAWLKKYIPAIPHGSKYRLYFNTPDGPLERIPAWATYVLPDDDGKQAFAIHWEPPPEAAHKWKNMKPKVPESLRIY 404 (872)
T ss_pred hcccCceeecccCCCCCCCeEEEEEEcCCCCcccCCCCeeeEEecCCCCceeeeEeCCCcccCCccCCCCCCCCCCceEE
Confidence 225999999999999988888999999999999988888999999999878899999999999999999
Q ss_pred EeecCCCCCCCCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcC
Q 003474 301 EAHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELG 380 (817)
Q Consensus 301 E~hv~~~~~~~~~G~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~G 380 (817)
|+|||++++++++|||++|+++ |++||+|+++|||++|||+||++||++|
T Consensus 405 E~HvGms~~e~kv~ty~eF~~~------------------------------vt~fFApssRYGTPeDLK~LVD~aH~~G 454 (872)
T PLN03244 405 ECHVGISGSEPKISSFEEFTEK------------------------------VTNFFAASSRYGTPDDFKRLVDEAHGLG 454 (872)
T ss_pred EEEeeecCCCCCcccHHHHhhc------------------------------cCcccccCcccCCHHHHHHHHHHHHHCC
Confidence 9999999999999999999952 7899999999999999999999999999
Q ss_pred cEEEEeeeccccCCCccccCcCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCC
Q 003474 381 LLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 460 (817)
Q Consensus 381 I~VIlDvV~NH~s~~~~~~l~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~ 460 (817)
|+||||||+||++.+...+++.|+|++..||+.+.++.+..|++..|||++++|++||+++++||++||||||||||+|+
T Consensus 455 I~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~yWleEyhIDGFRfDaVt 534 (872)
T PLN03244 455 LLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLNWWITEYQIDGFQFHSLA 534 (872)
T ss_pred CEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHHHHHHHHhCcCcceeecch
Confidence 99999999999999987899999999888999888889999999999999999999999999999999999999999999
Q ss_pred cccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCEEEEEecCCCCCCcccccccCCcccchhhhHHHH
Q 003474 461 SMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIA 540 (817)
Q Consensus 461 ~m~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~~~v~~~~P~~~~IgE~~~~~p~~~~~~~~gglgFD~~l~~~~~ 540 (817)
+|+|.|||+ .+|++++.+|++...|.+|+.||+++|+.+++.+|++++|||+++++|.+|+|..+||+||||+|+|+|+
T Consensus 535 SMLY~d~G~-~~f~g~~~~y~n~~~d~dAv~fL~laN~~ih~~~P~~itIAEDsS~~P~vt~Pv~~GGLGFDYKWnMgwm 613 (872)
T PLN03244 535 SMIYTHNGF-ASFNGDLDDYCNQYVDKDALMYLILANEILHALHPKIITIAEDATYYPGLCEPTSQGGLGFDYYVNLSAP 613 (872)
T ss_pred hheeecccc-ccccCCccccccccCCchHHHHHHHHHHHHHHhCCCeEEEEEcCCCCcCccccCCCCCCCccceecCcch
Confidence 999999999 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh-cchhhhhhhhHHhh-ccCcccccceecccCccccccCccchhhhccChhHHhhhhcCCCCChhhhHHHHH
Q 003474 541 DKWIELLKK-RDEDWKMGAIVHTM-TNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIAL 618 (817)
Q Consensus 541 d~~~~~l~~-~~~~~~~~~l~~~l-~~~~~~~~~v~y~esHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 618 (817)
+.|+++|+. .+..|.++.|.+++ +++++.+++++|.||||++.+|++++++|+++++||..|. .++++.|++++
T Consensus 614 dd~lkylk~~pderw~~~~ItfsL~~nrr~~ek~~aYsESHDqaLvGdKTlaf~l~d~~~y~~~~----~~~vv~Rg~aL 689 (872)
T PLN03244 614 DMWLDFLDNIPDHEWSMSKIVSTLIANKEYADKMLSYAENHNQSISGGRSFAEILFGAIDEDPLG----GKELLDRGCSL 689 (872)
T ss_pred HHHHHHHHhCCCcccCHHHHhhhhhcccCCcceEEEEecccceeccccchHHhhhcccccccccc----cchhhhhhhHH
Confidence 999999995 46679999999988 7788889999999999999999999999999999998873 46678899999
Q ss_pred HHHHHHHHHhCCCCceEeecccccCCCCCCCCCCCCCCCCCCCcCCCCCCCCcccccccCCCccccccchHHHHHHHHHH
Q 003474 619 HKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQ 698 (817)
Q Consensus 619 ~kla~~l~ltlpG~p~l~y~G~E~G~~e~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li 698 (817)
+||++++++++||.|+|||||+|||+++|.|+|+ .||++++..+|++|++.+.+ .++.|.+|+|+|+
T Consensus 690 hKMiRllt~~~~G~kkLnFMGNEFGhpe~~dfPr-----------~gN~~s~~~arrdW~Lld~~--~hk~L~~FdrdLn 756 (872)
T PLN03244 690 HKMIRLITFTIGGHAYLNFMGNEFGHPERIEFPM-----------PSNNFSFSLANRCWDLLENE--VHHHLFSFDKDLM 756 (872)
T ss_pred HHHHHHHHHHccCccceeecccccCCchheeccc-----------cCCCccccccccCccccCCh--hHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 49999999999888776543 5899999999999
Q ss_pred HHHHHhCCCCCCcEEEeeecCCCcEEEEEcCcEEEEEEcCCCCcccceEEcccCCCceEEEEcCCCCCcCCccccCCCcc
Q 003474 699 HLEEKYGFMTSEHQYVSRKDEGDRVIVFERGNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAE 778 (817)
Q Consensus 699 ~LR~~~~~l~~g~~~i~~~~~~~~Vlaf~R~~llvV~Nf~~~~~~~~~~i~v~~~g~~~~vl~sd~~~~gG~~~~~~~~~ 778 (817)
+|++++++|..+++|+.+.+.+++||||.|..+||||||+|++++.+|+|+||.+|+|+++||||+..|||+++++...
T Consensus 757 ~Ly~~~~aL~~gf~wI~~~d~e~kVIAF~R~~LLfVfNF~P~~sy~dYrIGVp~~G~Y~eILNSD~~~FGG~g~~~~~~- 835 (872)
T PLN03244 757 DLDENEGILSRGLPNIHHVKDAAMVISFMRGPFLFIFNFHPSNSYEGYDVGVEEAGEYQIILNSDETKYGGQGIIEEDH- 835 (872)
T ss_pred HHHhcCcccccCCcEEeeecCCCCEEEEEecCEEEEEeCCCCCCccCCEECCCCCCeEEEEEeCChhhhCCCCccCCCc-
Confidence 9999999999999999999999999999999999999999877999999999999999999999999999999987654
Q ss_pred eec--cccccCCCCeEEEEEEcCceEEEEEEeCCc
Q 003474 779 YFS--LEGWYDDQPHSFLVYAPSRTAVVYALADEE 811 (817)
Q Consensus 779 ~~~--~~~~~~~~~~~i~l~lpp~s~~Vl~~~~~~ 811 (817)
+.+ .+.+|++++++|+|+|||++++||++.++-
T Consensus 836 ~~t~~~~~~~~gr~~sl~l~LPprsavVlk~~~~~ 870 (872)
T PLN03244 836 YLQRSINKRIDGLRNCLEVFLPSRTAQVYKLSRIL 870 (872)
T ss_pred eeecccccccCCCCceEEEEeCCCEEEEEEEeeEe
Confidence 554 445789999999999999999999988753
No 3
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-121 Score=1031.58 Aligned_cols=689 Identities=57% Similarity=0.974 Sum_probs=652.8
Q ss_pred cchhhhhccCCCCCCCCCCCCcceecCCCCccchHhHHHHHHHHHHHHHHHHhccCchhhhhcccccCCcEEeCCc-EEE
Q 003474 109 EKSEVKREVGPRSIPPPGAGQNIYEIDPNLLGHRQHLDYRYGRYKQMCEDIDKYEGGLAAFSRGYEKFGFIRSDTG-ITY 187 (817)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~R~~~~~~~~~~i~~~~g~l~~f~~~y~~lG~~~~~~g-v~f 187 (817)
.+...+.+.+...+| +....+++++||||.+|..++++|++.+.+.+..|.+.+++|..|+.+|+.||+|+++++ +.|
T Consensus 39 ~~~~~~~e~~~~~~p-~~~ve~~~~~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~y~~~g~h~~~d~~v~~ 117 (757)
T KOG0470|consen 39 YDLRSALEAKSGDLP-ADVVEKFYEIDPFLVPFALFLRERYKQLDDGLEFIGKSEGGLSAFSRGYEPLGTHRTPDGRVDF 117 (757)
T ss_pred hhhHHHhhhhcCCCC-hHHhhcccccccccccccccchhhHHHHHHHhhhhhhccCChhhhhccccccceeccCCCceee
Confidence 344455667777777 889999999999999999999999999999999999999999999999999999999998 999
Q ss_pred EEecCCcCEEEEEeecCCCCCcccccc-cCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCC-ccccCCccceeeccC
Q 003474 188 REWAPGAKSASLIGDFNNWNPNADIMT-QNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG-IKDSIPAWIKFSVQA 265 (817)
Q Consensus 188 r~WAP~A~~V~LvgdFN~W~~~~~pm~-r~~~GvWei~lp~~~~g~~~~~~g~~yk~~~~~~~g-~~~~~~~~~~~~~~~ 265 (817)
++|||.|++|+++||||+|+.....|. +++.|+|++++|...+|.++++|++.+++.+.++.| ...++|||++++.+.
T Consensus 118 ~ewaP~a~~~s~~gd~n~W~~~~~~~~~k~~~g~w~i~l~~~~~~s~~v~H~s~~~~~~~~p~g~~~~~~~~~~~~~~~~ 197 (757)
T KOG0470|consen 118 TEWAPLAEAVSLIGDFNNWNPSSNELKPKDDLGVWEIDLPPKVNGSGAVPHGSVSKIHLSTPYGETCKRIPAWATYVDQE 197 (757)
T ss_pred eeecccccccccccccCCCCCcccccCcccccceeEEecCcccCCCccccccceeEEEeecCCcceeeccChHhhcccCC
Confidence 999999999999999999999988887 889999999999999999999999999999999999 469999999999998
Q ss_pred CCCCCCceEEeCCCccccccccCCCCCCCC-CceEEEeecCCCC-CCCCCCC---HHhhHhhhhhHHHHcCCCEEEEcCc
Q 003474 266 PGEIPYNGIYYDPPEEEKYVFQHPQPKKPK-SLRIYEAHVGMSS-TEPIINT---YANFRDDVLPRIKRLGYNAVQIMAV 340 (817)
Q Consensus 266 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~IYE~hv~~~~-~~~~~G~---~~~~~~~~L~ylk~LGv~~I~LmPi 340 (817)
....+|.+++|+|++...|.|++++|+.|+ +++|||+|||.|| .++++-+ |++|+++.||+||+||+||||||||
T Consensus 198 ~~~~q~~~~~~~~~~e~~w~~~~~~p~~P~~sL~IYE~HVrgfS~~E~~v~~~~gY~~FteKvlphlK~LG~NaiqLmpi 277 (757)
T KOG0470|consen 198 GEGPQYYGIYWDPSPEFDWGFKHSRPKIPESSLRIYELHVRGFSSHESKVNTRGGYLGFTEKVLPHLKKLGYNAIQLMPI 277 (757)
T ss_pred CcccceeeccCCCCCcccccccCCCCCCChhheEEEEEeeccccCCCCccccccchhhhhhhhhhHHHHhCccceEEeeh
Confidence 888889999999987788999999998887 9999999997665 4455545 9999975699999999999999999
Q ss_pred ccC-CCCCCCCCccccccCCCCCCCCHH------HHHHHHHHHHHcCcEEEEeeeccccCCCccccCcCCCCCC-CCccc
Q 003474 341 QEH-SYYASFGYHVTNFFAPSSRCGTPD------DLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTD-GHYFH 412 (817)
Q Consensus 341 ~e~-~~~~s~GY~v~dy~avd~~~Gt~e------dlk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~l~~fdg~~-~~yf~ 412 (817)
+|| .++.+|||+|++||++.+||||++ |||.||++||.+||-||||||+||++++..++++.|+|++ .+||+
T Consensus 278 ~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDVV~sHaa~n~~d~l~~fdGid~~~Yf~ 357 (757)
T KOG0470|consen 278 FEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDVVHSHAAKNSKDGLNMFDGIDNSVYFH 357 (757)
T ss_pred hhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhhhhhhcccCcCCcchhccCcCCceEEE
Confidence 999 688899999999999999999999 9999999999999999999999999998889999999998 78999
Q ss_pred cCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCcccccccCccccccCCcccccCcc---cChhH
Q 003474 413 SGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFA---TDVDA 489 (817)
Q Consensus 413 ~~~~g~~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~---~~~~a 489 (817)
.+++++|+.|+++.|||++|+|+++|+++|+||+.||+|||||||.+++|+|.|||...+|+++|.+|+|.. .+.++
T Consensus 358 ~~~r~~h~~~~~r~fn~~~~~V~rflL~nLr~WVtEY~vDGFRFD~~ssm~~~~~g~~~~f~gd~~~y~g~~g~~~d~~~ 437 (757)
T KOG0470|consen 358 SGPRGYHNSWCSRLFNYNHPVVLRFLLSNLRWWVTEYHVDGFRFDLVSSMLYTHHGNAAGFDGDYIEYFGTDGSFVDVDA 437 (757)
T ss_pred eCCcccccccccccccCCCHHHHHHHHHHHHHHHHheeccceEEcchhhhhhhccccccccCCcchhhhccCCCcccccH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987 88999
Q ss_pred HHHHHHHHHHhhccCCCEEEEEecCCCCCCc-ccccccCCcccc--hhhhHHHHHHHHHHHhh-cchhhhhhhhHHhhcc
Q 003474 490 VVYLMLVNDMIHGLYPEAVSIGEDVSGMPTF-CIPVQDGGVGFD--YRLQMAIADKWIELLKK-RDEDWKMGAIVHTMTN 565 (817)
Q Consensus 490 ~~fl~~~~~~v~~~~P~~~~IgE~~~~~p~~-~~~~~~gglgFD--~~l~~~~~d~~~~~l~~-~~~~~~~~~l~~~l~~ 565 (817)
+.+++.+|+.++...|+.|++||+.+++|.+ |.|..+|+.||| |+++|...++|++.|+. .+.+|.++.+...+++
T Consensus 438 l~~lmlAnd~~l~~~~~~It~~~D~~gm~~~~~~P~~~g~~~~d~~yr~~~~~~~k~~~~Lk~~~~~~~~~gs~~~~ltN 517 (757)
T KOG0470|consen 438 LVYLMLANDPLLGGTPGLITDAEDVSGMPGLGCFPVWQGGAGFDGLYRLAVRLFDKWIQLLKGSSDAEWIMGSIDYTLTN 517 (757)
T ss_pred HHHHHhhcchhhhcCCcceEeeeccccCCCcCCccccccccccchhhhHHhhhHHHHHHHhccCchhheeccCcceeeec
Confidence 9999999999999999999999999999999 999999999999 99999999999999998 8999999999999999
Q ss_pred CcccccceecccCccccccCc-cchhh-hccChhHHhhhhcCCCCChhhhHHHHHHHHHHHHHHhCCCCceEeecccccC
Q 003474 566 RRWLEKCVAYAESHDQALVGD-KTIAF-WLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFG 643 (817)
Q Consensus 566 ~~~~~~~v~y~esHD~~r~g~-~t~~~-~~~~~~~~~~~~~~~~~~~~~~~~~al~kla~~l~ltlpG~p~l~y~G~E~G 643 (817)
+++++++++|+++||++.+|+ +|+++ |+|++.||+.|+..++.+++++|++++|||++++++++.|..+|+|||||||
T Consensus 518 ~R~~e~~v~y~~~HDq~~v~d~~T~af~~l~d~~~~~~~~~g~p~~~~idR~r~~h~~~~lit~~lg~g~pl~fmGdEfG 597 (757)
T KOG0470|consen 518 RRYPEKSVNYAESHDQALVGDLVTIAFKWLMDETSWNCGSEGTPGTSVIDRGRALHKMIRLITLGLGGGAPLNFMGDEFG 597 (757)
T ss_pred cccccceeeeeeccCCccccceeeecchhhcchhhhcccccCCCcchHHHHHHHHHHHHHHHHHhccCccceeccccccC
Confidence 999999999999999999999 99999 9999999999999999999999999999999999999887778999999999
Q ss_pred CCCCCCCCCCCCCCCCCCcCCCCCCCCccccc-ccCCCccccccc-hHHHHHHHHHHHHHHHhCCCCCCcEEEeeecCCC
Q 003474 644 HPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRR-RFDLGDADYLRY-RGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGD 721 (817)
Q Consensus 644 ~~e~~d~p~~~~~~~~~~~~~gn~~s~~~~r~-~~~w~~~~~~~~-~~l~~f~r~Li~LR~~~~~l~~g~~~i~~~~~~~ 721 (817)
|++|.|+|+ .+|++++.++|+ +++..+.+..++ +.+.+|.+.|+.|...+..++.+.+|+...++.+
T Consensus 598 h~e~~d~~~-----------~~nn~s~~~~r~~~f~~~~~~~~r~~~~l~~F~~~~~~L~~~~~~~~~~~~~~~~k~e~~ 666 (757)
T KOG0470|consen 598 HPEWLDFPR-----------YGNNFSYNYARRKRFDLADSDLLRYRRQLNSFDREMNLLEERNGFTTSELQYISLKHEAD 666 (757)
T ss_pred CccccCCCc-----------ccCCccccccCccccccccchhhhhhhhhhhhhhHHHHHHHhccccccccccccccchhh
Confidence 999999998 599999999999 999999888888 8899999999999999999999999999999999
Q ss_pred cEEEEEcCcEEEEEEcCCCCcccceEEcccCCCceEEEEcCCCCCcCCccccCCCcceeccccccCCCCeEEEEEEcCce
Q 003474 722 RVIVFERGNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRT 801 (817)
Q Consensus 722 ~Vlaf~R~~llvV~Nf~~~~~~~~~~i~v~~~g~~~~vl~sd~~~~gG~~~~~~~~~~~~~~~~~~~~~~~i~l~lpp~s 801 (817)
++++|+|+.+++||||+++.++.+|.|++..+|+|+.||++|...+||+.+++.....++....+++++.+++||+|+++
T Consensus 667 ~~i~fer~~~~~vfn~h~~~s~~d~~vg~n~~~~~~iVl~sd~p~~~~~~rl~dt~~~~p~d~~~~g~~~~l~VY~~~~~ 746 (757)
T KOG0470|consen 667 EVIVFERGPLLFVFNFHDSNSYIDYRVGFNAPGKYTIVLNSDRPKGGGWNRLDDTALFFPYDFRSEGRPVSLQVYIPSRT 746 (757)
T ss_pred heeeeccCCeEEEEEecCCCCCceeEEEecCCCceEEEECCCCCCCCCccccccccccCccccccCCeeeeEEEEeccCc
Confidence 99999999999999999999999999999999999999999999999999999887777877888999999999999999
Q ss_pred EEEEEEeC
Q 003474 802 AVVYALAD 809 (817)
Q Consensus 802 ~~Vl~~~~ 809 (817)
++|+....
T Consensus 747 a~vl~~~~ 754 (757)
T KOG0470|consen 747 ATVLALLD 754 (757)
T ss_pred ceEeeecc
Confidence 99998764
No 4
>PLN02960 alpha-amylase
Probab=100.00 E-value=8.6e-120 Score=1052.02 Aligned_cols=656 Identities=43% Similarity=0.798 Sum_probs=583.3
Q ss_pred CccchHhHHHHHHHHHHHHHHHHhccCchhhhhcccccCCcEEeCC-cEEEEEecCCcCEEEEEeecCCCCCcccccc--
Q 003474 138 LLGHRQHLDYRYGRYKQMCEDIDKYEGGLAAFSRGYEKFGFIRSDT-GITYREWAPGAKSASLIGDFNNWNPNADIMT-- 214 (817)
Q Consensus 138 l~~~~~~~~~R~~~~~~~~~~i~~~~g~l~~f~~~y~~lG~~~~~~-gv~fr~WAP~A~~V~LvgdFN~W~~~~~pm~-- 214 (817)
-+.|+++|++||+.+++++.+|.+++++|..|+++|+.||+|++.+ |++|+||||+|+.++||||||+|++++++|.
T Consensus 82 ~~~f~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~~~~~~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~g 161 (897)
T PLN02960 82 DRAFAQFLRERHKALKDLKWEIFKRHIDLKEFASGFELLGMHRHPEHRVDFMEWAPGARYCSLVGDFNNWSPTENRAREG 161 (897)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHhhHHHHhccccCcccCeEEEEEcCCceeEEEeecccCCCcccchhhcc
Confidence 5789999999999999999999999999999999999999999875 8999999999999999999999999999876
Q ss_pred ---cCCCceEEEEeCCCC--------------------------------------------------------------
Q 003474 215 ---QNEFGVWEIFLPNNA-------------------------------------------------------------- 229 (817)
Q Consensus 215 ---r~~~GvWei~lp~~~-------------------------------------------------------------- 229 (817)
|+++|+|+|.|+..+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (897)
T PLN02960 162 YFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDDYDKGDSGIDIEELFQKMNDEYWEPGEDRFIKNRLEVPAKLYEQ 241 (897)
T ss_pred cccccccceEEEEechhhhcCCCcchhhhhhhccccccccCCCCCCHHHHHHHhhhhhcCCcchhhhhccchhHHHHHHH
Confidence 889999999995431
Q ss_pred ---------------------------------------------CC---------------------------------
Q 003474 230 ---------------------------------------------DG--------------------------------- 231 (817)
Q Consensus 230 ---------------------------------------------~g--------------------------------- 231 (817)
+|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 321 (897)
T PLN02960 242 MFGPNGPQTLEELGDIPDAETRYKEWKKEHKDDDPSNLPPLDIIDTGQPYDIFNVVTDPVWREKFLEKKPPLPYWEETRK 321 (897)
T ss_pred hhCCCCCcchhhhhccCccchhhhhhhhhccCCChhhCCCeeecCCCcccccceeccCHHHHHHHhccCCCCcceeeeee
Confidence 00
Q ss_pred ---------CCCCCCCCEEEEEEeCCCCccccCCccceeeccCCCCCCCceEEeCCCccccccccCCCCCCCCCceEEEe
Q 003474 232 ---------SPPIPHGSRVKIHMDTPSGIKDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHPQPKKPKSLRIYEA 302 (817)
Q Consensus 232 ---------~~~~~~g~~yk~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~IYE~ 302 (817)
.+.+.||++|+|+|++.+|..+++||||+++...+....+..++|+|+....|.|++.+|..+.+++|||+
T Consensus 322 ~~~gw~~~~ip~~~hG~~Yky~v~~~~g~~~~vdpyA~~~qp~~~~~~~~~v~~d~~~~~~y~W~~~~p~~~~~~vIYEl 401 (897)
T PLN02960 322 GRKAWLKKYIPAIPHGSKYRVYFNTPDGPLERVPAWATYVLPDPDGKQWYAIHWEPPPEEAYKWKFERPKVPKSLRIYEC 401 (897)
T ss_pred cCCcEEEEEccCCCCCCEEEEEEEeCCCceEECCCcceeEeecCCCccceEEEeCCCCCCCCCCCCCCCCCCCCcEEEEE
Confidence 11368999999999988777788999999987665554456788898644679999887767789999999
Q ss_pred ecCCCCCCCCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcE
Q 003474 303 HVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL 382 (817)
Q Consensus 303 hv~~~~~~~~~G~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~ 382 (817)
|||+|+.++++|||++++++.|||||+|||||||||||+|++.+.+|||++++||+|+++|||++|||+||++||++||+
T Consensus 402 Hvg~~~~e~~~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~ 481 (897)
T PLN02960 402 HVGISGSEPKISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLL 481 (897)
T ss_pred ecccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCE
Confidence 99999988889999999977799999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeccccCCCccccCcCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCcc
Q 003474 383 VLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSM 462 (817)
Q Consensus 383 VIlDvV~NH~s~~~~~~l~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m 462 (817)
||||+|+||++.++..++..|+|+...||+.+..+++..|+++.|||++++||+||+++++||++||||||||||+|++|
T Consensus 482 VILDvV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~EyhIDGfR~DAV~sM 561 (897)
T PLN02960 482 VFLDIVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSM 561 (897)
T ss_pred EEEEecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHCCCceeeccccee
Confidence 99999999999987678889999877888887778889999999999999999999999999999999999999999999
Q ss_pred cccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCEEEEEecCCCCCCcccccccCCcccchhhhHHHHHH
Q 003474 463 MYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADK 542 (817)
Q Consensus 463 ~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~~~v~~~~P~~~~IgE~~~~~p~~~~~~~~gglgFD~~l~~~~~d~ 542 (817)
+|.|+|. ..|+|+|.++++...|.+++.||+++|+.+++..|++++|||+.+++|.+|+|..+||+||||+|+|++++.
T Consensus 562 lY~d~g~-~~~~G~~~~~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilIAEdss~~P~vt~P~~~GGLGFDYkwnmG~~~d 640 (897)
T PLN02960 562 LYTHNGF-ASFTGDLDEYCNQYVDRDALIYLILANEMLHQLHPNIITIAEDATFYPGLCEPTSQGGLGFDYYVNLSPSEM 640 (897)
T ss_pred eeeccCc-cccCCcccccCCccCCchHHHHHHHHHHHHHhhCCCeEEEEECCCCCCCccccCCCCCCCcccccCCCcHHH
Confidence 9999987 467787777777778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh-cchhhhhhhhHHhhc-cCcccccceecccCccccccCccchhhhccChhHHhhhhcCCCCChhhhHHHHHHH
Q 003474 543 WIELLKK-RDEDWKMGAIVHTMT-NRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHK 620 (817)
Q Consensus 543 ~~~~l~~-~~~~~~~~~l~~~l~-~~~~~~~~v~y~esHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~k 620 (817)
|+++++. ..+.|.+..+...+. ++...+++|+|+|||||+.+|++++...+.+.+++..++.. +.+.|++++++
T Consensus 641 ~l~~l~~~~~r~~~~~~l~~s~~~~~~~~~~~v~Y~EnHDQVv~Gkrsl~~rL~g~~~~k~~~~~----~~~lRa~al~~ 716 (897)
T PLN02960 641 WLSLLENVPDQEWSMSKIVSTLVKNKENADKMLSYAENHNQSISGGKSFAEILLGKNKESSPAVK----ELLLRGVSLHK 716 (897)
T ss_pred HHHHHHhCcCCCCChhccEeeeccCcCCcceEEEEecCcCccccCcccHHHHCCCchhhhhcccC----hhhhhhhhHHH
Confidence 9999986 456777777777777 66788899999999999999999999888888777666552 34567888999
Q ss_pred HHHHHHHhCCCCceEeecccccCCCCCCCCCCCCCCCCCCCcCCCCCCCCcccccccCCCccccccchHHHHHHHHHHHH
Q 003474 621 MIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHL 700 (817)
Q Consensus 621 la~~l~ltlpG~p~l~y~G~E~G~~e~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~L 700 (817)
++++++++++|.++|+|||+|||+++|.++|+ ++|+.++..++ ++|...+...++.|++|+|+|++|
T Consensus 717 ~~rllt~~~~Pg~pLlFMG~EFGh~e~~~~Pd-----------P~n~~tf~~s~--LdW~Ll~~~~h~~l~~f~rdL~~L 783 (897)
T PLN02960 717 MIRLITFTLGGSAYLNFMGNEFGHPERVEFPR-----------ASNNFSFSLAN--RRWDLLEDGVHAHLFSFDKALMAL 783 (897)
T ss_pred HHHHHHHHhCCCCCEeeCccccCChhhhhCcC-----------CCCcccccccc--CCcccccChhHHHHHHHHHHHHHH
Confidence 98877666554346889999999988778877 57777776665 566666666799999999999999
Q ss_pred HHHhCCCCCCcEEEeeecCCCcEEEEEcCcEEEEEEcCCCCcccceEEcccCCCceEEEEcCCCCCcCCccccCCCcce-
Q 003474 701 EEKYGFMTSEHQYVSRKDEGDRVIVFERGNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEY- 779 (817)
Q Consensus 701 R~~~~~l~~g~~~i~~~~~~~~Vlaf~R~~llvV~Nf~~~~~~~~~~i~v~~~g~~~~vl~sd~~~~gG~~~~~~~~~~- 779 (817)
|+++|+|..++.|+.+.+.+++||||.|+.++||+||++..++.+|+|++|.+|+|+++||||+..|||.++++....+
T Consensus 784 r~~~paL~~g~~~i~~~d~~~~Viaf~R~~llvV~NFsp~~~~~~Y~vgvP~~G~y~eilNSD~~~yGG~g~~~~~~~~~ 863 (897)
T PLN02960 784 DEKYLILSRGLPNIHHVNDTSMVISFTRGPLLFAFNFHPTNSYEEYEVGVEEAGEYELILNTDEVKYGGQGRLTEDQYLQ 863 (897)
T ss_pred HhcChhhcCCcceeeeecCCCCEEEEEeCCeEEEEeCCCCCcCcCceECCCCCCcEEEEEeCchhhcCCCCccCCCccee
Confidence 9999999999999988888899999999999999999976678899999999999999999999999999988654333
Q ss_pred eccccccCCCCeEEEEEEcCceEEEEEEeCCc
Q 003474 780 FSLEGWYDDQPHSFLVYAPSRTAVVYALADEE 811 (817)
Q Consensus 780 ~~~~~~~~~~~~~i~l~lpp~s~~Vl~~~~~~ 811 (817)
.+...++++++++|.|+|||++++||++.++-
T Consensus 864 ~t~~~~~~g~~~si~i~LPp~sa~v~k~~~~~ 895 (897)
T PLN02960 864 RTKSKRIDGLRNCLELTLPSRSAQVYKLARIL 895 (897)
T ss_pred eccccccCCCCceEEEEeCCCEEEEEEEeeee
Confidence 35667899999999999999999999998753
No 5
>PRK12568 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.2e-104 Score=927.24 Aligned_cols=590 Identities=24% Similarity=0.462 Sum_probs=504.2
Q ss_pred HHHHhccCchhhhhcccccCCcEEe----CCcEEEEEecCCcCEEEEEeecCCCCCcccccccCCCceEEEEeCCCCCCC
Q 003474 157 EDIDKYEGGLAAFSRGYEKFGFIRS----DTGITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGS 232 (817)
Q Consensus 157 ~~i~~~~g~l~~f~~~y~~lG~~~~----~~gv~fr~WAP~A~~V~LvgdFN~W~~~~~pm~r~~~GvWei~lp~~~~g~ 232 (817)
.+++.+.++.+.+.+.|+.||+|.. .+||+|+||||+|++|+|+||||+|+...+||++.+.|||+++||+...
T Consensus 108 ~~~d~~~~~~g~~~~~y~~lGah~~~~~g~~Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~~~GVWelfipg~~~-- 185 (730)
T PRK12568 108 DESLLLQIAAGDGQALRRALGAQHVQVGEVPGVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQRIGGFWELFLPRVEA-- 185 (730)
T ss_pred CHHHHHHHhCCchhhhHHhcCCeEeeECCCCcEEEEEECCCCCEEEEEEecCCCCccceecccCCCCEEEEEECCCCC--
Confidence 4445555666788999999999973 5689999999999999999999999999999998899999999997554
Q ss_pred CCCCCCCEEEEEEeCCCCcc-ccCCccceeeccCCCCCCCceEEeCCCccccccccCC-----C-C-CCCCCceEEEeec
Q 003474 233 PPIPHGSRVKIHMDTPSGIK-DSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHP-----Q-P-KKPKSLRIYEAHV 304 (817)
Q Consensus 233 ~~~~~g~~yk~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----~-~-~~~~~~~IYE~hv 304 (817)
|..|||+|.+.+|.. ...|||++.+...+.+ .++++++. .|.|++. + + ...++++|||+||
T Consensus 186 -----G~~YKYeI~~~~G~~~~k~DPYA~~~e~~p~~---asvV~~~~---~~~W~d~~W~~~r~~~~~~~~~~IYEvHv 254 (730)
T PRK12568 186 -----GARYKYAITAADGRVLLKADPVARQTELPPAT---ASVVPSAA---AFAWTDAAWMARRDPAAVPAPLSIYEVHA 254 (730)
T ss_pred -----CCEEEEEEEcCCCeEeecCCCcceEeecCCCC---CeEEcCCC---CCCCCChhhhhcccccCCCCCcEEEEEEh
Confidence 679999999877754 6789999998776654 57887653 4666543 2 1 2357899999999
Q ss_pred CCCCCC--CCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcE
Q 003474 305 GMSSTE--PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL 382 (817)
Q Consensus 305 ~~~~~~--~~~G~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~ 382 (817)
|+|+.. ...++|++++++.|||||+||||+||||||+|++...+|||++++||+|+|+|||++|||+||++||++||+
T Consensus 255 gsf~~~~~~~~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~ 334 (730)
T PRK12568 255 ASWRRDGHNQPLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPDGFAQFVDACHRAGIG 334 (730)
T ss_pred HHhcCCCCCCCCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCHHHHHHHHHHHHHCCCE
Confidence 999864 346899999976789999999999999999999988899999999999999999999999999999999999
Q ss_pred EEEeeeccccCCCccccCcCCCCCCCCccccCC-CCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCc
Q 003474 383 VLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGS-RGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTS 461 (817)
Q Consensus 383 VIlDvV~NH~s~~~~~~l~~fdg~~~~yf~~~~-~g~~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~ 461 (817)
||||+|+||++.+. .++..|+|+. .|.+.++ .+.+..|++..|||++|+|++||+++++||++||||||||+|++++
T Consensus 335 VIlD~V~nH~~~d~-~~l~~fdg~~-~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyhIDG~R~DAva~ 412 (730)
T PRK12568 335 VILDWVSAHFPDDA-HGLAQFDGAA-LYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYHLDGLRVDAVAS 412 (730)
T ss_pred EEEEeccccCCccc-cccccCCCcc-ccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhCceEEEEcCHhH
Confidence 99999999999875 5778899874 4555443 4677889988999999999999999999999999999999999999
Q ss_pred ccccccCccccccCCc-ccccCcccChhHHHHHHHHHHHhhccCCCEEEEEecCCCCCCcccccccCCcccchhhhHHHH
Q 003474 462 MMYTHHGLQVAFTGNY-SEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIA 540 (817)
Q Consensus 462 m~~~~~g~~~~f~~~~-~~~~g~~~~~~a~~fl~~~~~~v~~~~P~~~~IgE~~~~~p~~~~~~~~gglgFD~~l~~~~~ 540 (817)
|+|.+++...+ .| .+.+|+.+|.++++||+++|+.+++.+|++++|||+++.+|.++++...||+|||++|+|+|+
T Consensus 413 mly~d~~r~~g---~w~pn~~gg~en~ea~~Fl~~ln~~v~~~~P~~~~IAEest~~p~vt~p~~~gGlGFd~kwn~gwm 489 (730)
T PRK12568 413 MLYRDYGRAEG---EWVPNAHGGRENLEAVAFLRQLNREIASQFPGVLTIAEESTAWPGVTAPISDGGLGFTHKWNMGWM 489 (730)
T ss_pred hhhhccccccc---cccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCccccccccCCCCCcCcEeCChhH
Confidence 99999887653 23 234688889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc--chhhhhhhhHHhhccCcccccceecccCccccccCccchhhhccChhHHhhhhcCCCCChhhhHHHHH
Q 003474 541 DKWIELLKKR--DEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIAL 618 (817)
Q Consensus 541 d~~~~~l~~~--~~~~~~~~l~~~l~~~~~~~~~v~y~esHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 618 (817)
++++++++.. .+.+....+...+.. .+.++.| +..|||++.+|++++. -. |.++. .+..+.
T Consensus 490 ~d~l~y~~~dp~~r~~~h~~ltf~~~y-~~~e~fv-lp~SHDEvvhgk~sl~-~k--------mpGd~------~~k~a~ 552 (730)
T PRK12568 490 HDTLHYMQRDPAERAHHHSQLTFGLVY-AFSERFV-LPLSHDEVVHGTGGLL-GQ--------MPGDD------WRRFAN 552 (730)
T ss_pred HHHHHHHhhCchhhhhhhhhhhhhhhh-hhhccEe-ccCCCcccccCchhhh-hc--------CCCCH------HHHHHH
Confidence 9999999963 455666666666653 5666665 7899999999988764 22 33331 244677
Q ss_pred HHHHHHHHHhCCCCceEeecccccCCC-CCCCCCCCCCCCCCCCcCCCCCCCCcccccccCCCccccccchHHHHHHHHH
Q 003474 619 HKMIRLVTMGLGGEAYLNFMGNEFGHP-EWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAM 697 (817)
Q Consensus 619 ~kla~~l~ltlpG~p~l~y~G~E~G~~-e~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~L 697 (817)
+|++.++|||+||.| |+|||+|||+. +|.+ ..+++|...++..++.+.+|+|+|
T Consensus 553 lR~~~~~~~~~PGkk-LlFmG~Efgq~~ew~~------------------------~~~ldW~ll~~~~h~~~~~~~~dL 607 (730)
T PRK12568 553 LRAYLALMWAHPGDK-LLFMGAEFGQWADWNH------------------------DQSLDWHLLDGARHRGMQQLVGDL 607 (730)
T ss_pred HHHHHHHHHhCCCcc-eeeCchhhCCcccccC------------------------CCCccccccCChhHHHHHHHHHHH
Confidence 788899999999995 66999999995 7743 246899988877889999999999
Q ss_pred HHHHHHhCCC------CCCcEEEeeecCCCcEEEEEc--C-----cEEEEEEcCCCCcccceEEcccCCCceEEEEcCCC
Q 003474 698 QHLEEKYGFM------TSEHQYVSRKDEGDRVIVFER--G-----NLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDD 764 (817)
Q Consensus 698 i~LR~~~~~l------~~g~~~i~~~~~~~~Vlaf~R--~-----~llvV~Nf~~~~~~~~~~i~v~~~g~~~~vl~sd~ 764 (817)
++||+++|+| ..|++|+.+.+.+++|+||.| + .+|||+||+| ..+.+|+|++|.+|.|+++||||+
T Consensus 608 n~ly~~~paL~~~d~~~~gf~wi~~~d~~~sv~af~R~~~~~~~~~v~vV~Nft~-~~~~~Y~ig~p~~G~~~eilNsd~ 686 (730)
T PRK12568 608 NAALRRTPALYRGTHRADGFDWSVADDARNSVLAFIRHDPDGGGVPLLAVSNLTP-QPHHDYRVGVPRAGGWREILNTDS 686 (730)
T ss_pred HHHHHhChhhhcccCCCCCeEEEeCCCCCCcEEEEEEecCCCCCCeEEEEECCCC-CCccCeEECCCCCCeEEEEEcCch
Confidence 9999999998 367999999999999999999 1 2999999996 788999999999999999999999
Q ss_pred CCcCCccccCCCcceeccccccCCCCeEEEEEEcCceEEEEEEe
Q 003474 765 PLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYALA 808 (817)
Q Consensus 765 ~~~gG~~~~~~~~~~~~~~~~~~~~~~~i~l~lpp~s~~Vl~~~ 808 (817)
..|||++..+.. .+.+.+.+|+++++++.|+|||++++||++.
T Consensus 687 ~~ygG~~~~n~~-~~~~~~~~~~g~~~s~~i~lppl~~~~~~~~ 729 (730)
T PRK12568 687 AHYGGSNLGNSG-RLATEPTGMHGHAQSLRLTLPPLATIYLQAE 729 (730)
T ss_pred hhhCCCCcCCCC-ceeecccccCCCccEEEEEeCCCEEEEEEEC
Confidence 999999876644 4566777899999999999999999999975
No 6
>PRK14706 glycogen branching enzyme; Provisional
Probab=100.00 E-value=8.5e-103 Score=915.26 Aligned_cols=576 Identities=27% Similarity=0.510 Sum_probs=485.7
Q ss_pred hhhcccccCCcEEeC----CcEEEEEecCCcCEEEEEeecCCCCCcccccccCCCceEEEEeCCCCCCCCCCCCCCEEEE
Q 003474 168 AFSRGYEKFGFIRSD----TGITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKI 243 (817)
Q Consensus 168 ~f~~~y~~lG~~~~~----~gv~fr~WAP~A~~V~LvgdFN~W~~~~~pm~r~~~GvWei~lp~~~~g~~~~~~g~~yk~ 243 (817)
.+.+.|+.||+|... +|++||+|||+|++|+|+||||+|+...+||.+.+.|+|+++||+.. +|..|+|
T Consensus 19 ~~~~~~~~lGah~~~~~~~~Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~~~GvW~~~vpg~~-------~g~~Yky 91 (639)
T PRK14706 19 DLVRPDHLLGAHPATEGGVEGVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRLDFGFWGAFVPGAR-------PGQRYKF 91 (639)
T ss_pred cccchhHhcCccCccCCCcccEEEEEECCCCCEEEEEEecCCcccccccccccCCCEEEEEECCCC-------CCCEEEE
Confidence 457889999999754 37999999999999999999999998889999988999999999753 5779999
Q ss_pred EEeCCCCc-cccCCccceeeccCCCCCCCceEEeCCCccccccccCCCC------CCCCCceEEEeecCCCCCC--CCCC
Q 003474 244 HMDTPSGI-KDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHPQP------KKPKSLRIYEAHVGMSSTE--PIIN 314 (817)
Q Consensus 244 ~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~------~~~~~~~IYE~hv~~~~~~--~~~G 314 (817)
+|.+.+|. .+++|||++++...+.. .++++++ .|.|++..+ ..+++++|||+|||+|+.. +..|
T Consensus 92 ~I~~~~g~~~~~~DPYa~~~~~~~~~---~svv~~~----~~~w~d~~w~~~~~~~~~~~~~IYE~Hvg~f~~~~~g~~~ 164 (639)
T PRK14706 92 RVTGAAGQTVDKMDPYGSFFEVRPNT---ASIIWED----RFEWTDTRWMSSRTAGFDQPISIYEVHVGSWARRDDGWFL 164 (639)
T ss_pred EEECCCCCEEeccCcceEEEecCCCC---ceEECCC----CCCCCCcccccccCCccCCCcEEEEEehhhcccCCCCCcc
Confidence 99987654 47899999998877654 5888876 377775532 2235799999999999753 3468
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeeccccCC
Q 003474 315 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASN 394 (817)
Q Consensus 315 ~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~s~ 394 (817)
+|++++++.++|||+|||||||||||+|++..++|||++++||+|+++|||++|||+||++||++||+||||+|+||++.
T Consensus 165 ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~ 244 (639)
T PRK14706 165 NYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPT 244 (639)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCc
Confidence 99999964459999999999999999999998999999999999999999999999999999999999999999999998
Q ss_pred CccccCcCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCcccccccCcccccc
Q 003474 395 NVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFT 474 (817)
Q Consensus 395 ~~~~~l~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~ 474 (817)
+. .++..|||+..++|.....+++..|++..||+++|+||+||+++++||++||||||||||+|++|+|.|++... |
T Consensus 245 ~~-~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~-~- 321 (639)
T PRK14706 245 DE-SGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTE-W- 321 (639)
T ss_pred ch-hhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCccc-c-
Confidence 75 67888998764445444557888999999999999999999999999999999999999999999999887642 3
Q ss_pred CCcccccCcccChhHHHHHHHHHHHhhccCCCEEEEEecCCCCCCcccccccCCcccchhhhHHHHHHHHHHHhhcchhh
Q 003474 475 GNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKRDEDW 554 (817)
Q Consensus 475 ~~~~~~~g~~~~~~a~~fl~~~~~~v~~~~P~~~~IgE~~~~~p~~~~~~~~gglgFD~~l~~~~~d~~~~~l~~~~~~~ 554 (817)
..+++|++.|.+++.||+++|+.+++.+|++++|||+++++|.+++++.. |+|||++|+|.|++.++++++.. ..|
T Consensus 322 --~~~~~gg~~n~~a~~fl~~ln~~v~~~~p~~~~iAE~~~~~~~v~~~~~~-G~gFD~~w~~~w~~~~l~~~~~~-~~~ 397 (639)
T PRK14706 322 --VPNIHGGRENLEAIAFLKRLNEVTHHMAPGCMMIAEESTSFPGVTVPTPY-GLGFDYKWAMGWMNDTLAYFEQD-PLW 397 (639)
T ss_pred --cccccCCcccHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCcCcccccCC-CCccccEeccHHHHHHHHHhccC-chh
Confidence 46688999999999999999999999999999999999999999999875 99999999999999999888743 222
Q ss_pred hh---hhhHHhhccCcccccceecccCccccccCccchhhhccChhHHhhhhcCCCCChhhhHHHHHHHHHHHHHHhCCC
Q 003474 555 KM---GAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGG 631 (817)
Q Consensus 555 ~~---~~l~~~l~~~~~~~~~v~y~esHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~kla~~l~ltlpG 631 (817)
.. ..+.... ...+.++.| |++|||+++++++++.. .|+.+. ....+..|++.++|||+||
T Consensus 398 r~~~~~~lt~~~-~y~~~e~~i-l~~SHDev~~~k~sl~~-k~~g~~--------------~~~~a~~r~~~~~~~t~PG 460 (639)
T PRK14706 398 RKYHHHKLTFFN-VYRTSENYV-LAISHDEVVHLKKSMVM-KMPGDW--------------YTQRAQYRAFLAMMWTTPG 460 (639)
T ss_pred hhhchhccchhh-hhhccccEe-cCCCCccccCCccchHh-HcCCCH--------------HHHHHHHHHHHHHHHhCCC
Confidence 22 1111111 124445555 88999999998877542 222221 1235677888899999999
Q ss_pred CceEeecccccCCC-CCCCCCCCCCCCCCCCcCCCCCCCCcccccccCCCccccccchHHHHHHHHHHHHHHHhCCCC--
Q 003474 632 EAYLNFMGNEFGHP-EWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMT-- 708 (817)
Q Consensus 632 ~p~l~y~G~E~G~~-e~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LR~~~~~l~-- 708 (817)
.|.| |||+|||+. +|. ++++++|...+...++.|.+|+|+||+||+++|+|.
T Consensus 461 ~pLi-FmG~EfG~~~ew~------------------------~~~~l~W~l~~~~~~~~l~~~~k~L~~L~k~~paL~~g 515 (639)
T PRK14706 461 KKLL-FMGQEFAQGTEWN------------------------HDASLPWYLTDVPDHRGVMNLVRRLNQLYRERPDWHRG 515 (639)
T ss_pred CcEE-EeccccCCCCCCC------------------------cccCCCCcccCCHHHHHHHHHHHHHHHHHHhCHHHhhC
Confidence 9755 999999984 432 456788987665566789999999999999999994
Q ss_pred ----CCcEEEeeecCCCcEEEEEcC------cEEEEEEcCCCCcccceEEcccCCCceEEEEcCCCCCcCCccccCCCcc
Q 003474 709 ----SEHQYVSRKDEGDRVIVFERG------NLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAE 778 (817)
Q Consensus 709 ----~g~~~i~~~~~~~~Vlaf~R~------~llvV~Nf~~~~~~~~~~i~v~~~g~~~~vl~sd~~~~gG~~~~~~~~~ 778 (817)
.+++|+.+.+.+++|+||.|. .+|||+||++ ..+.+|+|++|.+|+|+++||||+..|||+++.+. .
T Consensus 516 d~~~~~f~wi~~~d~~~~VlaF~R~~~~~~~~vlvV~Nfs~-~~~~~y~ig~p~~g~~~~i~nsd~~~~gG~g~~n~--~ 592 (639)
T PRK14706 516 DKREEGLYWVSADDTDNSVYAYVRRDSESGAWSLAVANLTP-VYREQYRIGVPQGGEYRVLLSTDDGEYGGFGTQQP--D 592 (639)
T ss_pred CCCCCCeEEEEeecCCCCEEEEEEecCCCCeeEEEEEeCCC-CCcCCeEECCCCCCeEEEEEcCCccccCCCCCCCC--c
Confidence 568899888888899999992 2999999997 77899999999999999999999999999998764 3
Q ss_pred eeccccccCCCCeEEEEEEcCceEEEEEEeC
Q 003474 779 YFSLEGWYDDQPHSFLVYAPSRTAVVYALAD 809 (817)
Q Consensus 779 ~~~~~~~~~~~~~~i~l~lpp~s~~Vl~~~~ 809 (817)
+.+...+|++++++|.|+|||++++||++++
T Consensus 593 ~~~~~~~~~g~~~si~i~lp~~~~~~~~~~~ 623 (639)
T PRK14706 593 LMASQEGWHGQPHSLSLNLPPSSVLILEFVG 623 (639)
T ss_pred eeccccccCCCccEEEEEeCCcEEEEEEECC
Confidence 5667778999999999999999999999863
No 7
>PRK14705 glycogen branching enzyme; Provisional
Probab=100.00 E-value=5.1e-103 Score=952.03 Aligned_cols=588 Identities=28% Similarity=0.491 Sum_probs=504.2
Q ss_pred HHHHHhccCchhhhhcccccCCcEEe--------CCcEEEEEecCCcCEEEEEeecCCCCCccccccc-CCCceEEEEeC
Q 003474 156 CEDIDKYEGGLAAFSRGYEKFGFIRS--------DTGITYREWAPGAKSASLIGDFNNWNPNADIMTQ-NEFGVWEIFLP 226 (817)
Q Consensus 156 ~~~i~~~~g~l~~f~~~y~~lG~~~~--------~~gv~fr~WAP~A~~V~LvgdFN~W~~~~~pm~r-~~~GvWei~lp 226 (817)
+.+++.+.++.+.+.+.|+.||+|.. .+|++|+||||+|++|+|+||||+|++..++|.+ .+.|||+++||
T Consensus 603 ~~~~d~~lf~~g~~~~~y~~lGah~~~~~~~~~~~~Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~~~~GvW~~fip 682 (1224)
T PRK14705 603 VGEVDLHLIGEGRHEKLWDVLGAHVQHYKSSLGDVDGVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSLGSSGVWELFIP 682 (1224)
T ss_pred CCHHHHHHHhCCchhhHHHhcCCeEeeccCccCCCCeEEEEEECCCCCEEEEEEEecCCCCCcccceECCCCCEEEEEEC
Confidence 34555566677789999999999972 4589999999999999999999999999999987 46899999999
Q ss_pred CCCCCCCCCCCCCEEEEEEeCCCCc-cccCCccceeeccCCCCCCCceEEeCCCccccccccCC-----CC---CCCCCc
Q 003474 227 NNADGSPPIPHGSRVKIHMDTPSGI-KDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHP-----QP---KKPKSL 297 (817)
Q Consensus 227 ~~~~g~~~~~~g~~yk~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----~~---~~~~~~ 297 (817)
+... |..|||+|.+.+|. ..+.|||++.....+.+ .|+++|+. |.|++. +. ...+++
T Consensus 683 g~~~-------G~~Yky~i~~~~g~~~~k~DPyA~~~e~~p~~---aS~V~d~~----~~w~d~~W~~~r~~~~~~~~p~ 748 (1224)
T PRK14705 683 GVVA-------GACYKFEILTKAGQWVEKADPLAFGTEVPPLT---ASRVVEAS----YAFKDAEWMSARAERDPHNSPM 748 (1224)
T ss_pred CCCC-------CCEEEEEEEcCCCcEEecCCccccccccCCCC---CeEEeCCC----CCcCChhhhhccccCCCCcCCc
Confidence 7655 56999999987775 46789999988776554 58999873 666543 21 123689
Q ss_pred eEEEeecCCCCCCCCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHH
Q 003474 298 RIYEAHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAH 377 (817)
Q Consensus 298 ~IYE~hv~~~~~~~~~G~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH 377 (817)
+|||+|||+|+.. ++|++++++.|||||+|||||||||||+|++.++||||++++||+|+++|||++|||+||++||
T Consensus 749 ~IYEvHvgsf~~~---~~~~~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H 825 (1224)
T PRK14705 749 SVYEVHLGSWRLG---LGYRELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLH 825 (1224)
T ss_pred EEEEEEecccccC---CchHHHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHH
Confidence 9999999999873 8999999766899999999999999999999999999999999999999999999999999999
Q ss_pred HcCcEEEEeeeccccCCCccccCcCCCCCCCCccccCC-CCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEE
Q 003474 378 ELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGS-RGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRF 456 (817)
Q Consensus 378 ~~GI~VIlDvV~NH~s~~~~~~l~~fdg~~~~yf~~~~-~g~~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~ 456 (817)
++||+||||+|+||++.+. +++..|+|+. .|++.++ .+.+..|++..|||++++||+||+++++||++|||||||||
T Consensus 826 ~~GI~VILD~V~nH~~~d~-~~l~~fdg~~-~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~ 903 (1224)
T PRK14705 826 QAGIGVLLDWVPAHFPKDS-WALAQFDGQP-LYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFHIDGLRV 903 (1224)
T ss_pred HCCCEEEEEeccccCCcch-hhhhhcCCCc-ccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCCcEEE
Confidence 9999999999999999875 6788899874 4555554 47889999999999999999999999999999999999999
Q ss_pred ecCCcccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCEEEEEecCCCCCCcccccccCCcccchhhh
Q 003474 457 DGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQ 536 (817)
Q Consensus 457 D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~~~v~~~~P~~~~IgE~~~~~p~~~~~~~~gglgFD~~l~ 536 (817)
|+|++|+|.|++...+.+ ..+.+|+++|.++++||+++|+.|++.+|++++|||+++.+|.+++|...||+||||+||
T Consensus 904 Dav~~mly~Dysr~~g~w--~pn~~gg~en~~ai~fl~~ln~~v~~~~p~~~~IAEest~~p~vt~p~~~GGlGFd~kWn 981 (1224)
T PRK14705 904 DAVASMLYLDYSREEGQW--RPNRFGGRENLEAISFLQEVNATVYKTHPGAVMIAEESTAFPGVTAPTSHGGLGFGLKWN 981 (1224)
T ss_pred eehhhhhhcccccccccc--cccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCcCccccccCCCccCCcEec
Confidence 999999999988765422 246789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc--chhhhhhhhHHhhccCcccccceecccCccccccCccchhhhccChhHHhhhhcCCCCChhhhH
Q 003474 537 MAIADKWIELLKKR--DEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDR 614 (817)
Q Consensus 537 ~~~~d~~~~~l~~~--~~~~~~~~l~~~l~~~~~~~~~v~y~esHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (817)
|.|+++++++++.. .+.|.+..+.+.+.. .+.++.+ +..|||++.+|++++. ..|+++++.+
T Consensus 982 mgwmhd~l~Y~~~dp~~r~~~~~~ltf~~~y-a~~e~fv-l~~SHDevvhgk~sl~-~km~Gd~~~k------------- 1045 (1224)
T PRK14705 982 MGWMHDSLKYASEDPINRKWHHGTITFSLVY-AFTENFL-LPISHDEVVHGKGSML-RKMPGDRWQQ------------- 1045 (1224)
T ss_pred chhhHHHHHHhhhCcchhhcccchHHHHHHH-HhhcCEe-cccccccccccchhHH-HhCCCcHHHH-------------
Confidence 99999999998863 356677777766654 3556655 6789999998877653 4455544433
Q ss_pred HHHHHHHHHHHHHhCCCCceEeecccccCCC-CCCCCCCCCCCCCCCCcCCCCCCCCcccccccCCCccccccchHHHHH
Q 003474 615 GIALHKMIRLVTMGLGGEAYLNFMGNEFGHP-EWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEF 693 (817)
Q Consensus 615 ~~al~kla~~l~ltlpG~p~l~y~G~E~G~~-e~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f 693 (817)
.+.+|++.+++|++||+| |+|||+|||+. +|.+ ..+++|...++..++.+..|
T Consensus 1046 -~a~lR~~~a~~~~~PGk~-LlFMG~Efgq~~ew~~------------------------~~~LdW~ll~~~~h~~~~~~ 1099 (1224)
T PRK14705 1046 -LANLRAFLAYQWAHPGKQ-LIFMGTEFGQEAEWSE------------------------QHGLDWFLADIPAHRGIQLL 1099 (1224)
T ss_pred -HHHHHHHHHHHHhcCCcC-EEECccccCCCCCccc------------------------cccCCCcccCChhhHHHHHH
Confidence 456788889999999995 66999999995 6632 24689998877788999999
Q ss_pred HHHHHHHHHHhCCCC------CCcEEEeeecCCCcEEEEEc-----CcEEEEEEcCCCCcccceEEcccCCCceEEEEcC
Q 003474 694 DRAMQHLEEKYGFMT------SEHQYVSRKDEGDRVIVFER-----GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDS 762 (817)
Q Consensus 694 ~r~Li~LR~~~~~l~------~g~~~i~~~~~~~~Vlaf~R-----~~llvV~Nf~~~~~~~~~~i~v~~~g~~~~vl~s 762 (817)
+|+||+||+++|+|. .|++|+.+.+.+++|++|.| +.++||+||+| ..+.+|+|++|.+|.|+++|||
T Consensus 1100 ~rdLn~ly~~~paL~~~d~~~~gf~wi~~~d~~~~vlaf~R~~~~~~~vlvv~Nftp-~~~~~y~igvp~~G~y~eilns 1178 (1224)
T PRK14705 1100 TKDLNELYTSTPALYQRDNEPGGFQWINGGDADRNVLSFIRWDGDGNPLVCAINFSG-GPHKGYTLGVPAAGAWTEVLNT 1178 (1224)
T ss_pred HHHHHHHHhcChhhhccCCCCCceEEeecCCCCCcEEEEEEeCCCCCEEEEEEcCCC-CCccCceECCCCCCeEEEEEeC
Confidence 999999999999984 56889998898999999999 24999999996 7888999999999999999999
Q ss_pred CCCCcCCccccCCCcceeccccccCCCCeEEEEEEcCceEEEEEEe
Q 003474 763 DDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYALA 808 (817)
Q Consensus 763 d~~~~gG~~~~~~~~~~~~~~~~~~~~~~~i~l~lpp~s~~Vl~~~ 808 (817)
|+..|||++..+.. .+.+.+.+|++++++|.|+|||++++||++.
T Consensus 1179 d~~~ygGsg~~n~~-~~~~~~~~~~g~~~s~~i~lPpl~~~~~~~~ 1223 (1224)
T PRK14705 1179 DHETYGGSGVLNPG-SLKATTEGQDGQPATLTVTLPPLGASFFAPA 1223 (1224)
T ss_pred chhhcCCCCcCCCC-ceeecccccCCCCceEEEEecCCEEEEEEEC
Confidence 99999999987654 3456677899999999999999999999875
No 8
>PRK12313 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.2e-95 Score=864.93 Aligned_cols=583 Identities=29% Similarity=0.530 Sum_probs=477.7
Q ss_pred hhhcccccCCcEEeCC----cEEEEEecCCcCEEEEEeecCCCCCcccccccCCCceEEEEeCCCCCCCCCCCCCCEEEE
Q 003474 168 AFSRGYEKFGFIRSDT----GITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKI 243 (817)
Q Consensus 168 ~f~~~y~~lG~~~~~~----gv~fr~WAP~A~~V~LvgdFN~W~~~~~pm~r~~~GvWei~lp~~~~g~~~~~~g~~yk~ 243 (817)
++.+.|+.||+|.... |++||+|||+|++|+|+||||+|+...++|.+.+.|+|+++||+.. +|..|+|
T Consensus 19 ~~~~~~~~lGah~~~~~~~~gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~~~Gvw~~~i~~~~-------~g~~Y~y 91 (633)
T PRK12313 19 EHFRLYEYLGAHLEEVDGEKGTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRRESGVWEGFIPGAK-------EGQLYKY 91 (633)
T ss_pred CcccchhcCCcEEeccCCcccEEEEEECCCCCEEEEEEecCCCCcccccccccCCCEEEEEeCCCC-------CCCEEEE
Confidence 5667899999998776 8999999999999999999999998889999989999999999643 4679999
Q ss_pred EEeCCCCc-cccCCccceeeccCCCCCCCceEEeCCCccccccccCCCC--------CCCCCceEEEeecCCCCCC--CC
Q 003474 244 HMDTPSGI-KDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHPQP--------KKPKSLRIYEAHVGMSSTE--PI 312 (817)
Q Consensus 244 ~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--------~~~~~~~IYE~hv~~~~~~--~~ 312 (817)
++...+|. .++.|||++.....+.. .++++|++ +|.|++... ...++++|||+|||+|+.+ ++
T Consensus 92 ~v~~~~g~~~~~~DPya~~~~~~~~~---~s~v~d~~---~~~w~~~~~~~~~~~~~~~~~~~~iYe~hv~~f~~~~~~~ 165 (633)
T PRK12313 92 HISRQDGYQVEKIDPFAFYFEARPGT---ASIVWDLP---EYKWKDGLWLARRKRWNALDRPISIYEVHLGSWKRNEDGR 165 (633)
T ss_pred EEECCCCeEEecCCCceEEEecCCCC---ceEECCCc---ccCCCChhhhhccccCCCCCCCceEEEEehhccccCCCCC
Confidence 99876665 47899999998776543 58999985 577776531 1226799999999999864 56
Q ss_pred CCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeecccc
Q 003474 313 INTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHA 392 (817)
Q Consensus 313 ~G~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~ 392 (817)
.|||++++++.|||||+||||+||||||++++..++|||++++||+|+|+|||++|||+||++||++||+||||+|+||+
T Consensus 166 ~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH~ 245 (633)
T PRK12313 166 PLSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDWVPGHF 245 (633)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence 79999999544699999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred CCCccccCcCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCcccccccCcccc
Q 003474 393 SNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVA 472 (817)
Q Consensus 393 s~~~~~~l~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~ 472 (817)
+.++ .++..|+++..+++.....+++..|+..+||++||+||++|+++++||++||||||||||+|.+|++.+++....
T Consensus 246 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~ 324 (633)
T PRK12313 246 PKDD-DGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGE 324 (633)
T ss_pred CCCc-ccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCcEEEEcChhhhhhcccccccC
Confidence 9875 456678876433333333456678999999999999999999999999999999999999999999887773222
Q ss_pred ccCCcccccCcccChhHHHHHHHHHHHhhccCCCEEEEEecCCCCCCcccccccCCcccchhhhHHHHHHHHHHHhhc--
Q 003474 473 FTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKR-- 550 (817)
Q Consensus 473 f~~~~~~~~g~~~~~~a~~fl~~~~~~v~~~~P~~~~IgE~~~~~p~~~~~~~~gglgFD~~l~~~~~d~~~~~l~~~-- 550 (817)
|.+ +.+++..+.++++||+++++.|++.+|++++|||+++.+|.++.+...+|+|||++|++.+++.++.+++..
T Consensus 325 ~~~---~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~ 401 (633)
T PRK12313 325 WTP---NKYGGRENLEAIYFLQKLNEVVYLEHPDVLMIAEESTAWPKVTGPVEVGGLGFDYKWNMGWMNDTLRYFEEDPI 401 (633)
T ss_pred cCC---cccCCCCCcHHHHHHHHHHHHHHHHCCCeEEEEECCCCCccccccccCCCCCcCceeCcHHHHHHHHHhhhCcc
Confidence 432 234556677889999999999999999999999999999999999999999999999999999888888643
Q ss_pred chhhhhhhhHHhhccCcccccceecccCccccccCccchhhhccChhHHhhhhcCCCCChhhhHHHHHHHHHHHHHHhCC
Q 003474 551 DEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLG 630 (817)
Q Consensus 551 ~~~~~~~~l~~~l~~~~~~~~~v~y~esHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~kla~~l~ltlp 630 (817)
...+.+..+...+. ..+.++. ++++|||+++.|+.++... +.++++ ...+++|++.+++||+|
T Consensus 402 ~~~~~~~~~~~~~~-~~~~e~~-~l~~sHD~~~~g~~~~~~~-~~g~~~--------------~~~~~~r~~~~~~~t~p 464 (633)
T PRK12313 402 YRKYHHNLLTFSFM-YAFSENF-VLPFSHDEVVHGKKSLMHK-MPGDRW--------------QQFANLRLLYTYMITHP 464 (633)
T ss_pred ccccccccchHHHh-hhhhccc-ccCCCCcccccCCccHHHh-cCCCHH--------------HHHHHHHHHHHHHHhCC
Confidence 12233332322222 1233333 4778999998888776532 222221 23567788999999999
Q ss_pred CCceEeecccccCCC-CCCCCCCCCCCCCCCCcCCCCCCCCcccccccCCCccccccchHHHHHHHHHHHHHHHhCCCC-
Q 003474 631 GEAYLNFMGNEFGHP-EWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMT- 708 (817)
Q Consensus 631 G~p~l~y~G~E~G~~-e~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LR~~~~~l~- 708 (817)
|+|.| |||+|+|+. +|. .+++++|...+...++.|++|+|+||+||+++|+|+
T Consensus 465 G~Pli-f~G~E~g~~~~~~------------------------~~~~l~W~~~~~~~~~~l~~~~r~Li~LRr~~paL~~ 519 (633)
T PRK12313 465 GKKLL-FMGSEFGQFLEWK------------------------HDESLEWHLLEDPMNAGMQRFTSDLNQLYKDEPALWE 519 (633)
T ss_pred CCcEe-ecccccccCccCC------------------------ccCCCCccccCChhHHHHHHHHHHHHHHHHhChHhhc
Confidence 99755 999999995 432 125788987665568899999999999999999996
Q ss_pred -----CCcEEEeeecCCCcEEEEEcCc------EEEEEEcCCCCcccceEEcccCCCceEEEEcCCCCCcCCccccCCCc
Q 003474 709 -----SEHQYVSRKDEGDRVIVFERGN------LVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNA 777 (817)
Q Consensus 709 -----~g~~~i~~~~~~~~Vlaf~R~~------llvV~Nf~~~~~~~~~~i~v~~~g~~~~vl~sd~~~~gG~~~~~~~~ 777 (817)
.+..|+...+.+++|+||.|.. ++||+||++ ....+|+|++|.+|+|+++||||+..|||+++.+. .
T Consensus 520 ~d~~~~~~~~l~~~~~~~~vlaf~R~~~~~~~~llvv~N~s~-~~~~~y~i~~p~~g~~~~ilnsd~~~ygG~~~~~~-~ 597 (633)
T PRK12313 520 LDFSPDGFEWIDADDADQSVLSFIRKGKNKGDFLVVVFNFTP-VEREDYRIGVPVAGIYEEILNTDSEEFGGSGKGNN-G 597 (633)
T ss_pred ccCCCCCcEEEECcCCCCCEEEEEEeCCCCCceEEEEEeCCC-CcccceeECCCCCCeEEEEEcCCchhcCCCCcCCC-C
Confidence 3467776656567899999943 999999995 56778999999899999999999999999998653 3
Q ss_pred ceeccccccCCCCeEEEEEEcCceEEEEEEeCCc
Q 003474 778 EYFSLEGWYDDQPHSFLVYAPSRTAVVYALADEE 811 (817)
Q Consensus 778 ~~~~~~~~~~~~~~~i~l~lpp~s~~Vl~~~~~~ 811 (817)
.+.+....|+++++++.|+|||++++||++..+.
T Consensus 598 ~~~~~~~~~~g~~~~~~i~ip~~s~~v~~~~~~~ 631 (633)
T PRK12313 598 TVKAQEGPWHGRPQSLTLTLPPLGALVLKPKRRL 631 (633)
T ss_pred ceeecccccCCCCCEEEEEeCCCEEEEEEEcccc
Confidence 4566667799999999999999999999987653
No 9
>PRK05402 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.8e-95 Score=873.02 Aligned_cols=610 Identities=28% Similarity=0.490 Sum_probs=494.3
Q ss_pred CCCcceecCCCCccchHhHHHHHHHHHHHHHHHHhccCchhhhhcccccCCcEEeC----CcEEEEEecCCcCEEEEEee
Q 003474 127 AGQNIYEIDPNLLGHRQHLDYRYGRYKQMCEDIDKYEGGLAAFSRGYEKFGFIRSD----TGITYREWAPGAKSASLIGD 202 (817)
Q Consensus 127 ~~~~~~~~dp~l~~~~~~~~~R~~~~~~~~~~i~~~~g~l~~f~~~y~~lG~~~~~----~gv~fr~WAP~A~~V~Lvgd 202 (817)
+|..+.+.|||-.+. .+.. .+|. ...-+.+.+.|+.||+|... +|++||+|||+|++|+|+||
T Consensus 84 ~g~~~~k~DPyaf~~--~~~~---------~~~~--~~~~g~~~~~~~~LGah~~~~~~~~gv~FrvwAP~A~~V~l~gd 150 (726)
T PRK05402 84 GGGEQLIDDPYRFGP--LLGE---------LDLY--LFGEGTHLRLYETLGAHPVTVDGVSGVRFAVWAPNARRVSVVGD 150 (726)
T ss_pred CCceeEeccccccCC--CCCH---------HHHH--HHhCCccchhhhccccEEeccCCCCcEEEEEECCCCCEEEEEEE
Confidence 556688999998754 1111 1121 22233788899999999874 78999999999999999999
Q ss_pred cCCCCCcccccccC-CCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCCc-cccCCccceeeccCCCCCCCceEEeCCCc
Q 003474 203 FNNWNPNADIMTQN-EFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGI-KDSIPAWIKFSVQAPGEIPYNGIYYDPPE 280 (817)
Q Consensus 203 FN~W~~~~~pm~r~-~~GvWei~lp~~~~g~~~~~~g~~yk~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 280 (817)
||+|+...++|++. +.|+|+++||+. ++|..|+|++...+|. .+..|||++.+...+.. .++++|++
T Consensus 151 fn~w~~~~~~m~~~~~~Gvw~~~i~~~-------~~g~~Y~y~v~~~~g~~~~~~DPYa~~~~~~~~~---~s~v~d~~- 219 (726)
T PRK05402 151 FNGWDGRRHPMRLRGESGVWELFIPGL-------GEGELYKFEILTADGELLLKADPYAFAAEVRPAT---ASIVADLS- 219 (726)
T ss_pred cCCCCCccccceEcCCCCEEEEEeCCC-------CCCCEEEEEEeCCCCcEeecCCCceEEEecCCCC---cEEEeCCc-
Confidence 99999888999998 889999999964 3577999999987665 47899999998877654 58999984
Q ss_pred cccccccCCCC--------CCCCCceEEEeecCCCCCC---CCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCC
Q 003474 281 EEKYVFQHPQP--------KKPKSLRIYEAHVGMSSTE---PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASF 349 (817)
Q Consensus 281 ~~~~~~~~~~~--------~~~~~~~IYE~hv~~~~~~---~~~G~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~ 349 (817)
+|.|++... ...++++|||+|||+|+.+ ++.|||++++++.|||||+||||+||||||++++...+|
T Consensus 220 --~~~w~~~~~~~~~~~~~~~~~~~~iYe~hv~~f~~~~~~~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~ 297 (726)
T PRK05402 220 --QYQWNDAAWMEKRAKRNPLDAPISIYEVHLGSWRRHEDGGRFLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSW 297 (726)
T ss_pred --cCCCCCcchhhcccccCcccCCcEEEEEehhhhccCCCCCcccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCC
Confidence 577775532 1346899999999999853 567999999953359999999999999999999988899
Q ss_pred CCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeeccccCCCccccCcCCCCCCCCccccCC-CCCcccCCCCCCC
Q 003474 350 GYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGS-RGYHWMWDSRLFN 428 (817)
Q Consensus 350 GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~l~~fdg~~~~yf~~~~-~g~~~~w~~~~ln 428 (817)
||+++|||+|+|+|||++|||+||++||++||+||||+|+||++.++ .++..|+++. .|++.+. .+.++.|++..||
T Consensus 298 GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~~-~~~~~~~~~~-~y~~~~~~~~~~~~w~~~~~n 375 (726)
T PRK05402 298 GYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDWVPAHFPKDA-HGLARFDGTA-LYEHADPREGEHPDWGTLIFN 375 (726)
T ss_pred CCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCc-cchhccCCCc-ceeccCCcCCccCCCCCcccc
Confidence 99999999999999999999999999999999999999999998875 5677888764 4444333 4667889999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCccEEEEecCCcccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCEE
Q 003474 429 YGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAV 508 (817)
Q Consensus 429 ~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~~~v~~~~P~~~ 508 (817)
++||+||++|+++++||++||||||||||+|.+|++.+++...+++ ..+.+++..+.++++||+++++.|++.+|+++
T Consensus 376 ~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~fl~~~~~~~~~~~p~~~ 453 (726)
T PRK05402 376 YGRNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEGEW--IPNIYGGRENLEAIDFLRELNAVVHEEFPGAL 453 (726)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEECCHHHhhhcccccccccc--ccccccCcCCHHHHHHHHHHHHHHHHHCCCeE
Confidence 9999999999999999999999999999999999998887655432 23456677788899999999999999999999
Q ss_pred EEEecCCCCCCcccccccCCcccchhhhHHHHHHHHHHHhhc--chhhhhhhhHHhhccCcccccceecccCccccccCc
Q 003474 509 SIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKR--DEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGD 586 (817)
Q Consensus 509 ~IgE~~~~~p~~~~~~~~gglgFD~~l~~~~~d~~~~~l~~~--~~~~~~~~l~~~l~~~~~~~~~v~y~esHD~~r~g~ 586 (817)
+|||+++.+|.++.+...+|+|||+.|++.+++.++++++.. ...+....+...+. ..+.++. ++++|||++++++
T Consensus 454 liaE~~~~~~~~~~~~~~~G~gfd~~wn~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~-~l~~sHD~~~~g~ 531 (726)
T PRK05402 454 TIAEESTAWPGVTRPTEEGGLGFGYKWNMGWMHDTLDYMERDPIYRKYHHNELTFSLL-YAYSENF-VLPLSHDEVVHGK 531 (726)
T ss_pred EEEECCCCCcCccccccCCCCCCCceecCCcchHHHHHHhhCcccccccccchhHHHh-Hhhhccc-cCCCCCceeeeCc
Confidence 999999999999999888999999999999998888887642 12222222222221 1233333 4789999999888
Q ss_pred cchhhhccChhHHhhhhcCCCCChhhhHHHHHHHHHHHHHHhCCCCceEeecccccCCCCCCCCCCCCCCCCCCCcCCCC
Q 003474 587 KTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGN 666 (817)
Q Consensus 587 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~kla~~l~ltlpG~p~l~y~G~E~G~~e~~d~p~~~~~~~~~~~~~gn 666 (817)
+++... +..++ ....+.+|++.+++||+||+|.| |||||+|++...+
T Consensus 532 ~~l~~~-~~g~~--------------~~~~~~lrl~~~~~~t~pG~Pli-f~G~E~g~~~~~~----------------- 578 (726)
T PRK05402 532 GSLLGK-MPGDD--------------WQKFANLRAYYGYMWAHPGKKLL-FMGGEFGQGREWN----------------- 578 (726)
T ss_pred ccHHhh-CCCCH--------------HHHHHHHHHHHHHHHHCCCcCEe-eCchhcCCCCCCC-----------------
Confidence 775422 22211 12356788899999999999755 9999999974211
Q ss_pred CCCCcccccccCCCccccccchHHHHHHHHHHHHHHHhCCCCC------CcEEEeeecCCCcEEEEEcC------cEEEE
Q 003474 667 NFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTS------EHQYVSRKDEGDRVIVFERG------NLVFV 734 (817)
Q Consensus 667 ~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LR~~~~~l~~------g~~~i~~~~~~~~Vlaf~R~------~llvV 734 (817)
.+++++|...+...++.+++|+|+|++||+++|+|+. ++.|+...+.+++|+||.|. .++||
T Consensus 579 ------~~~~l~W~~~~~~~~~~l~~~~k~Li~Lr~~~~aL~~g~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~vlvv 652 (726)
T PRK05402 579 ------HDASLDWHLLDFPWHRGVQRLVRDLNHLYRAEPALHELDFDPEGFEWIDADDAENSVLSFLRRGKDDGEPLLVV 652 (726)
T ss_pred ------ccCcCCccccCCcchHHHHHHHHHHHHHHHhChhhhccccCcCCeeEEecccCCCCEEEEEEecCCCCCeEEEE
Confidence 2367899876555678999999999999999999963 46677666667789999992 49999
Q ss_pred EEcCCCCcccceEEcccCCCceEEEEcCCCCCcCCccccCCCcceeccccccCCCCeEEEEEEcCceEEEEEEeC
Q 003474 735 FNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYALAD 809 (817)
Q Consensus 735 ~Nf~~~~~~~~~~i~v~~~g~~~~vl~sd~~~~gG~~~~~~~~~~~~~~~~~~~~~~~i~l~lpp~s~~Vl~~~~ 809 (817)
+||++ ....+|+|++|.+|+|+++||||+..|||++.++.. .+.+...+|+++++++.|+|||++++||++..
T Consensus 653 ~N~~~-~~~~~y~i~~p~~g~~~~ilnsd~~~~gg~~~~~~~-~~~~~~~~~~g~~~~~~i~lp~~~~~v~~~~~ 725 (726)
T PRK05402 653 CNFTP-VPRHDYRLGVPQAGRWREVLNTDAEHYGGSNVGNGG-GVHAEEVPWHGRPHSLSLTLPPLATLILKPEA 725 (726)
T ss_pred EeCCC-CcccceEECCCCCCeEEEEEcCcchhhCCCCCCCCC-ceeccccccCCCCCEEEEEeCCCEEEEEEEcC
Confidence 99995 566789999998999999999999999999987644 56666778999999999999999999999864
No 10
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=100.00 E-value=1.4e-94 Score=850.47 Aligned_cols=579 Identities=29% Similarity=0.521 Sum_probs=468.9
Q ss_pred hhhhcccccCCcEEeC----CcEEEEEecCCcCEEEEEeecCCCCCcccccccC-CCceEEEEeCCCCCCCCCCCCCCEE
Q 003474 167 AAFSRGYEKFGFIRSD----TGITYREWAPGAKSASLIGDFNNWNPNADIMTQN-EFGVWEIFLPNNADGSPPIPHGSRV 241 (817)
Q Consensus 167 ~~f~~~y~~lG~~~~~----~gv~fr~WAP~A~~V~LvgdFN~W~~~~~pm~r~-~~GvWei~lp~~~~g~~~~~~g~~y 241 (817)
+++...|+.||+|... +|++||+|||+|++|+|+||||+|+...++|.+. +.|+|+++||+.. +|..|
T Consensus 8 g~~~~~~~~LGah~~~~~~~~g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~~~~Gvw~~~i~~~~-------~g~~Y 80 (613)
T TIGR01515 8 GSHFRSYELLGSHYMELDGVSGTRFCVWAPNAREVRVAGDFNYWDGREHPMRRRNDNGIWELFIPGIG-------EGELY 80 (613)
T ss_pred CccCChHHhcCceEeccCCcCcEEEEEECCCCCEEEEEEecCCCCCceecceEecCCCEEEEEeCCCC-------CCCEE
Confidence 3567789999999986 6899999999999999999999999888999887 4899999999754 47799
Q ss_pred EEEEeCCCCc-cccCCccceeeccCCCCCCCceEEeCCCc--cccccccCCCC-C--CCCCceEEEeecCCCCCCCCCCC
Q 003474 242 KIHMDTPSGI-KDSIPAWIKFSVQAPGEIPYNGIYYDPPE--EEKYVFQHPQP-K--KPKSLRIYEAHVGMSSTEPIINT 315 (817)
Q Consensus 242 k~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~-~--~~~~~~IYE~hv~~~~~~~~~G~ 315 (817)
+|+|.+.+|. ....|||++.+...+.. .++++||+. +.+..|+..++ . ..++++|||+|||+|+.+ ||
T Consensus 81 ~y~v~~~~g~~~~~~DPYA~~~~~~~~~---~s~v~d~~~~~w~~~~w~~~~~~~~~~~~~~~iYe~hv~~~~~~---g~ 154 (613)
T TIGR01515 81 KYEIVTNNGEIRLKADPYAFYAEVRPNT---ASLVYDLEGYSWQDQKWQEKRKAKTPYEKPVSIYELHLGSWRHG---LS 154 (613)
T ss_pred EEEEECCCCcEEEeCCCCEeeeccCCCC---cEEEECCccCccCchhhhhcccccCcccCCceEEEEehhhccCC---CC
Confidence 9999886654 47899999988765543 588898752 12223443322 1 235789999999999865 99
Q ss_pred HHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeeccccCCC
Q 003474 316 YANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNN 395 (817)
Q Consensus 316 ~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~s~~ 395 (817)
|++|+++.|||||+||||+||||||++++...+|||++++||+|+++|||++|||+||++||++||+||||+|+||++.+
T Consensus 155 ~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~ 234 (613)
T TIGR01515 155 YRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKD 234 (613)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCc
Confidence 99999533599999999999999999999888999999999999999999999999999999999999999999999987
Q ss_pred ccccCcCCCCCCCCccccCC-CCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCcccccccCcccccc
Q 003474 396 VLDGLNMFDGTDGHYFHSGS-RGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFT 474 (817)
Q Consensus 396 ~~~~l~~fdg~~~~yf~~~~-~g~~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~ 474 (817)
. ..+..|++.. .|++.+. .+.++.|+.++||+++|+||++|+++++||++||||||||||+|.+|++.++|...+.+
T Consensus 235 ~-~~~~~~~~~~-~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~ 312 (613)
T TIGR01515 235 D-HGLAEFDGTP-LYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEW 312 (613)
T ss_pred c-chhhccCCCc-ceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhccccccccc
Confidence 5 4566777753 4444433 35677899999999999999999999999999999999999999999998887765432
Q ss_pred CCcccccCcccChhHHHHHHHHHHHhhccCCCEEEEEecCCCCCCcccccccCCcccchhhhHHHHHHHHHHHhhcc--h
Q 003474 475 GNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKRD--E 552 (817)
Q Consensus 475 ~~~~~~~g~~~~~~a~~fl~~~~~~v~~~~P~~~~IgE~~~~~p~~~~~~~~gglgFD~~l~~~~~d~~~~~l~~~~--~ 552 (817)
. .+.+++..+.++++||+++++.|++.+|++++|||+++.+|.++.+...+|+|||++|++.+++.++.+++... +
T Consensus 313 ~--~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~ 390 (613)
T TIGR01515 313 S--PNEDGGRENLEAVDFLRKLNQTVYEAFPGVVTIAEESTEWPGVTRPTDEGGLGFHYKWNMGWMHDTLDYMSTDPVER 390 (613)
T ss_pred c--ccccCCcCChHHHHHHHHHHHHHHHHCCCeEEEEEeCCCCccccccccCCcCCcCeeeCchHHHHHHHHHhhChhhH
Confidence 1 12445666788999999999999999999999999999999999999999999999999999988888875321 1
Q ss_pred hhhhhhhHHhhccCcccccceecccCccccccCccchhhhccChhHHhhhhcCCCCChhhhHHHHHHHHHHHHHHhCCCC
Q 003474 553 DWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGE 632 (817)
Q Consensus 553 ~~~~~~l~~~l~~~~~~~~~v~y~esHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~kla~~l~ltlpG~ 632 (817)
.+....+...+. ..+.++.+ +++|||+++.|++++... |.+++ ....+.+|++.+++||+||+
T Consensus 391 ~~~~~~~~~~~~-~~~~e~~~-~~~sHD~~~~g~~~i~~~---------~~g~~------~~~~~~~r~~~~~~~t~pG~ 453 (613)
T TIGR01515 391 QYHHQLITFSML-YAFSENFV-LPLSHDEVVHGKKSLLNK---------MPGDY------WQKFANYRALLGYMWAHPGK 453 (613)
T ss_pred hhccccccHHHH-HHhhhccc-cCCCCCCcccCcccHHHh---------CCCch------HHHHHHHHHHHHHHHhCCCC
Confidence 111111111111 12334343 789999998888776432 22221 12256778899999999999
Q ss_pred ceEeecccccCCC-CCCCCCCCCCCCCCCCcCCCCCCCCcccccccCCCccccccchHHHHHHHHHHHHHHHhCCCC---
Q 003474 633 AYLNFMGNEFGHP-EWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMT--- 708 (817)
Q Consensus 633 p~l~y~G~E~G~~-e~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LR~~~~~l~--- 708 (817)
|.| |||+|+|+. +|.+ +++++|...+...++.+++|+|+||+||+++|+|.
T Consensus 454 pli-f~G~E~g~~~~~~~------------------------~~~l~W~~~~~~~~~~l~~~~k~L~~Lr~~~paL~~~~ 508 (613)
T TIGR01515 454 KLL-FMGSEFAQGSEWND------------------------TEQLDWHLLSFPMHQGVSVFVRDLNRTYQKSKALYEHD 508 (613)
T ss_pred CEE-EcchhcCcCCCCCC------------------------CccCCCccccCcccHHHHHHHHHHHHHHhhCHHhhccC
Confidence 755 999999994 5421 24788987665678899999999999999999985
Q ss_pred ---CCcEEEeeecCCCcEEEEEcC------cEEEEEEcCCCCcccceEEcccCCCceEEEEcCCCCCcCCccccCCCcce
Q 003474 709 ---SEHQYVSRKDEGDRVIVFERG------NLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEY 779 (817)
Q Consensus 709 ---~g~~~i~~~~~~~~Vlaf~R~------~llvV~Nf~~~~~~~~~~i~v~~~g~~~~vl~sd~~~~gG~~~~~~~~~~ 779 (817)
.+++|+...+.+++|++|.|. .++||+||++ ..+.+|+|++|.+|+|+++|||++..|||.++++... .
T Consensus 509 ~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~~~vv~N~~~-~~~~~Y~i~~p~~g~~~~il~Sd~~~~gG~g~~~~~~-~ 586 (613)
T TIGR01515 509 FDPQGFEWIDVDDDEQSVFSFIRRAKKHGEALVIICNFTP-VVRHQYRVGVPQPGQYREVLNSDSETYGGSGQGNKGP-L 586 (613)
T ss_pred CCCCceEEEEcccCCCCEEEEEEecCCCCCeEEEEEeCCC-CCccceEeCCCCCCeEEEEEeCChhhcCCCCcCCCCc-e
Confidence 456778776667789999992 4999999995 6778999999888999999999999999999887553 4
Q ss_pred eccccccCCCCeEEEEEEcCceEEEEE
Q 003474 780 FSLEGWYDDQPHSFLVYAPSRTAVVYA 806 (817)
Q Consensus 780 ~~~~~~~~~~~~~i~l~lpp~s~~Vl~ 806 (817)
.+...++++++++|.|+|||++++|||
T Consensus 587 ~~~~~~~~g~~~~i~i~iP~~~~~~~~ 613 (613)
T TIGR01515 587 SAEEGALHGRPCSLTMTLPPLATSWLR 613 (613)
T ss_pred eccccccCCCCCEEEEEeCCcEEEEeC
Confidence 556667999999999999999999985
No 11
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-94 Score=823.27 Aligned_cols=588 Identities=30% Similarity=0.486 Sum_probs=489.0
Q ss_pred HHhccCchhhhhcccccCCcEEeCC---cEEEEEecCCcCEEEEEeecCCCCCcccccccC-CCceEEEEeCCCCCCCCC
Q 003474 159 IDKYEGGLAAFSRGYEKFGFIRSDT---GITYREWAPGAKSASLIGDFNNWNPNADIMTQN-EFGVWEIFLPNNADGSPP 234 (817)
Q Consensus 159 i~~~~g~l~~f~~~y~~lG~~~~~~---gv~fr~WAP~A~~V~LvgdFN~W~~~~~pm~r~-~~GvWei~lp~~~~g~~~ 234 (817)
++.+........+.|+.||+|..+. |++|++|||+|+.|+|+||||+|+...++|... ++|+|++|||+...
T Consensus 9 ~d~~~~~~~~~~~~~~~~GA~~~~~g~~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~~~~G~we~~vp~~~~---- 84 (628)
T COG0296 9 MDDYLFAEGTHLRLYEKLGAHPIENGVSGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDRKESGIWELFVPGAPP---- 84 (628)
T ss_pred ccccccccccchhhHhhhCcccccCCCCceEEEEECCCCCeEEEEeecCCccceecccccCCCCceEEEeccCCCC----
Confidence 3444444556778899999998543 599999999999999999999999999998754 89999999997555
Q ss_pred CCCCCEEEEEEeCCCCcc-ccCCccceeeccCCCCCCCceEEeCCCcccccccc----CCCC--CCCCCceEEEeecCCC
Q 003474 235 IPHGSRVKIHMDTPSGIK-DSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQ----HPQP--KKPKSLRIYEAHVGMS 307 (817)
Q Consensus 235 ~~~g~~yk~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----~~~~--~~~~~~~IYE~hv~~~ 307 (817)
|.+|||++.+.+|.. ...|||+++....+.+ .|++++++ .|.|+ +.+. +..++++|||+|||+|
T Consensus 85 ---G~~Yky~l~~~~g~~~~~~DP~a~~~~~~p~~---aS~v~~~~---~y~W~d~~~~~~~~~~~~e~~vIYElHvGs~ 155 (628)
T COG0296 85 ---GTRYKYELIDPSGQLRLKADPYARRQEVGPHT---ASQVVDLP---DYEWQDERWDRAWRGRFWEPIVIYELHVGSF 155 (628)
T ss_pred ---CCeEEEEEeCCCCceeeccCchhhccCCCCCC---cceecCCC---CcccccccccccccCCCCCCceEEEEEeeec
Confidence 669999999998853 6778999998877776 58899875 37776 3222 2347999999999999
Q ss_pred CCCCCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEee
Q 003474 308 STEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDI 387 (817)
Q Consensus 308 ~~~~~~G~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDv 387 (817)
+++ ..-++.++++++|||||+||||||+||||.|||++.|||||++.||||++|||||+|||+|||+||++||.||||+
T Consensus 156 ~~~-~~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~ 234 (628)
T COG0296 156 TPD-RFLGYFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDW 234 (628)
T ss_pred cCC-CCcCHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 986 5556666666899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCCCccccCcCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCccccccc
Q 003474 388 VHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHH 467 (817)
Q Consensus 388 V~NH~s~~~~~~l~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~ 467 (817)
|+||++.+. .++..|+|+..+.+..-.++.++.|++..+|++++|||+||++|++||+++|||||||+|||.+|+|.|+
T Consensus 235 V~~HF~~d~-~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~smly~d~ 313 (628)
T COG0296 235 VPNHFPPDG-NYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVASMLYLDY 313 (628)
T ss_pred cCCcCCCCc-chhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHHHHHHHhCCcceeeehhhhhhccch
Confidence 999999976 7899999987555555557899999999999999999999999999999999999999999999999986
Q ss_pred CccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCEEEEEecCCCCCCcccccccCCcccchhhhHHHHHHHHHHH
Q 003474 468 GLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELL 547 (817)
Q Consensus 468 g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~~~v~~~~P~~~~IgE~~~~~p~~~~~~~~gglgFD~~l~~~~~d~~~~~l 547 (817)
.+... ... .+.+|+.++..+++|++.+|+.|+...|++++|+|+|+++|..+.+...+|+||+|+++|+++.+.+.++
T Consensus 314 ~~~~~-~~~-~n~~ggr~n~~a~efl~~~n~~i~~~~pg~~~iaeestd~~~~t~~~~~gG~gf~yk~nmg~m~D~~~y~ 391 (628)
T COG0296 314 SRAEG-EWV-PNEYGGRENLEAAEFLRNLNSLIHEEEPGAMTIAEESTDDPHVTLPVAIGGLGFGYKWNMGWMHDTLFYF 391 (628)
T ss_pred hhhhh-ccc-ccccCCcccHHHHHHhhhhhhhhcccCCCceeeeeeccCCCCceeeecccccchhhhhhhhhHhhHHHhc
Confidence 65431 111 2345778899999999999999999999999999999999999999999999999999999998888888
Q ss_pred hhc--chhhhhhhhHHhhccCcccccceecccCccccccCccchhhhccChhHHhhhhcCCCCChhhhHHHHHHHHHHHH
Q 003474 548 KKR--DEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLV 625 (817)
Q Consensus 548 ~~~--~~~~~~~~l~~~l~~~~~~~~~v~y~esHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~kla~~l 625 (817)
.+. .+.+..+.+...+. .. .+..+.|+.||||+.+|++++..+ |.+++. ...+..|.+.++
T Consensus 392 ~~~~~~r~~~h~~~tf~~~-y~-~se~~~l~~sHDevvhGk~sl~~r---------m~g~~~------~~~a~lr~~~a~ 454 (628)
T COG0296 392 GKDPVYRKYHHGELTFGLL-YA-FSENVVLPLSHDEVVHGKRSLGER---------MPGDAW------QKFANLRALAAY 454 (628)
T ss_pred ccCccccccccCCCccccc-cc-cceeEeccccccceeecccchhcc---------CCcchh------hhHHHHHHHHHH
Confidence 764 34555555544433 12 234567999999999999987533 322221 335677888999
Q ss_pred HHhCCCCceEeecccccCCC-CCCCCCCCCCCCCCCCcCCCCCCCCcccccccCCCccc----cccchHHHHHHHHHHHH
Q 003474 626 TMGLGGEAYLNFMGNEFGHP-EWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDAD----YLRYRGMQEFDRAMQHL 700 (817)
Q Consensus 626 ~ltlpG~p~l~y~G~E~G~~-e~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~----~~~~~~l~~f~r~Li~L 700 (817)
|+++||+| |+|||+|||+. +|..+ ...+|...+ ..+++.+..|.+.|+++
T Consensus 455 ~~~~Pgk~-LLFMG~Efgq~~e~~~~------------------------~~~~w~~L~~~~~~g~~~~~~~~~~~ln~~ 509 (628)
T COG0296 455 MWLHPGKP-LLFMGEEFGQGREWNFF------------------------SSLDWLLLDQAVREGRHKEFRRLVRDLNAL 509 (628)
T ss_pred HHhCCCce-eeecchhhccCCCCccc------------------------CCCChhhhhhccccchHHHHHHHHHhhHHh
Confidence 99999996 55999999994 77643 235564333 23478999999999988
Q ss_pred HHHhCCC------CCCcEEEeeecCCCcEEEEEc-------CcEEEEEEcCCCCcccceEEcccCCCceEEEEcCCCCCc
Q 003474 701 EEKYGFM------TSEHQYVSRKDEGDRVIVFER-------GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLF 767 (817)
Q Consensus 701 R~~~~~l------~~g~~~i~~~~~~~~Vlaf~R-------~~llvV~Nf~~~~~~~~~~i~v~~~g~~~~vl~sd~~~~ 767 (817)
.+..+.+ .+++.|+...+.+.+|++|.| +.+++|+||++ ..+.+|+++++..|.|+++||||...|
T Consensus 510 y~~~~~l~~~~~~~~~~~W~~~~~~~~~v~af~R~l~~~~~~~lv~~~n~~~-~~~~~y~~~~~~~g~~~~~lntd~~~~ 588 (628)
T COG0296 510 YRIPDPLHEQDFQPEGFEWIDADDAENSVLAFYRRLLALRHEHLVVVNNFTP-VPRVDYRVGVPVAGRWREVLNTDLAEY 588 (628)
T ss_pred hccCCccchhhhcccCCceeecCchhhhHHHHHHHHhhcCCceEEEEeCCCC-CcccccccCCcccccEEEeccchHHHh
Confidence 8777654 478899998887778999999 24788888885 788999999998999999999999999
Q ss_pred CCccccCCCcceeccccccCCCCeEEEEEEcCceEEEEE
Q 003474 768 GGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYA 806 (817)
Q Consensus 768 gG~~~~~~~~~~~~~~~~~~~~~~~i~l~lpp~s~~Vl~ 806 (817)
||++..+....+.++...++++..++.++|||.+++||+
T Consensus 589 ggs~~~~~~~~~~~~~~~~~~~~~~~~~~lpp~~~~~l~ 627 (628)
T COG0296 589 GGSGAGNLGLPVSGEDILWHGREWSLSLTLPPLAALVLK 627 (628)
T ss_pred cCCccccccceecceeeeccCcceeeEEecCCceeeEee
Confidence 999987755446666667789999999999999999986
No 12
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=100.00 E-value=1e-73 Score=673.94 Aligned_cols=509 Identities=18% Similarity=0.284 Sum_probs=371.3
Q ss_pred cCCcEEeCCcEEEEEecCCcCEEEEEeecCCCCCc----ccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCC
Q 003474 175 KFGFIRSDTGITYREWAPGAKSASLIGDFNNWNPN----ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 250 (817)
Q Consensus 175 ~lG~~~~~~gv~fr~WAP~A~~V~LvgdFN~W~~~----~~pm~r~~~GvWei~lp~~~~g~~~~~~g~~yk~~~~~~~g 250 (817)
+||+|+..+|++|+||||+|++|+|++ |++|+.. .++|.+.+.|||+++||+.. +|..|+|+++..++
T Consensus 11 ~lG~~~~~~~~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~~~gvw~~~i~~~~-------~g~~Y~y~v~~~~~ 82 (605)
T TIGR02104 11 ELGAVYTPEKTVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRGENGVWSAVLEGDL-------HGYFYTYQVCINGK 82 (605)
T ss_pred CCccEEECCeeEEEEECCCCCEEEEEE-EcCCCCCccceEEecccCCCCEEEEEECCCC-------CCCEEEEEEEcCCC
Confidence 899999999999999999999999998 8888643 57899988999999999754 47799999987655
Q ss_pred ccccCCccceeeccCCCCCCCceEEeCCCccccccccCCC-C--CCCCCceEEEeecCCCCCCCC-----CCCHHhhHhh
Q 003474 251 IKDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHPQ-P--KKPKSLRIYEAHVGMSSTEPI-----INTYANFRDD 322 (817)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~--~~~~~~~IYE~hv~~~~~~~~-----~G~~~~~~~~ 322 (817)
.....|||++....... .++++|+...+++.|...+ + ..+++++|||+|||+|+..+. .|+|.++++.
T Consensus 83 ~~~~~DPya~~~~~~~~----~s~v~d~~~~~~~~w~~~~~~~~~~~~~~vIYElhv~~ft~~~~~~~~~~G~f~~~~e~ 158 (605)
T TIGR02104 83 WRETVDPYAKAVTVNGK----RGAVIDLERTNPEGWEKDHRPRLENPEDAIIYELHIRDFSIHENSGVKNKGKYLGLTET 158 (605)
T ss_pred eEEEcCCCcceeccCCC----cEEEEcccccCccCcccccCCCCCChhHcEEEEEecchhccCCCCCcCCCCceeeeecc
Confidence 45788999988655322 5889998655566776543 2 345789999999999986432 6899999842
Q ss_pred ----------hhhHHHHcCCCEEEEcCcccCCCC--------CCCCCccccccCCCCCCCC--------HHHHHHHHHHH
Q 003474 323 ----------VLPRIKRLGYNAVQIMAVQEHSYY--------ASFGYHVTNFFAPSSRCGT--------PDDLKSLIDKA 376 (817)
Q Consensus 323 ----------~L~ylk~LGv~~I~LmPi~e~~~~--------~s~GY~v~dy~avd~~~Gt--------~edlk~LV~~a 376 (817)
+|||||+||||+||||||++++.. .+|||++++||+|+++||+ ++|||+||++|
T Consensus 159 ~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~ 238 (605)
T TIGR02104 159 GTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQAL 238 (605)
T ss_pred CccccccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHH
Confidence 499999999999999999998641 3699999999999999997 58999999999
Q ss_pred HHcCcEEEEeeeccccCCCccccCcCCCCCCCCccc-cCCCCCcc-cC-CCCCCCCCCHHHHHHHHHHHHHHHHhCCccE
Q 003474 377 HELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFH-SGSRGYHW-MW-DSRLFNYGSWEVLRFLLSNARWWLEEYKFDG 453 (817)
Q Consensus 377 H~~GI~VIlDvV~NH~s~~~~~~l~~fdg~~~~yf~-~~~~g~~~-~w-~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDG 453 (817)
|++||+||||+|+||++... ...|++..+.||. ....+... .+ ...++|+.+|+||++|+++++||++||||||
T Consensus 239 H~~Gi~VilDvV~NH~~~~~---~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~~iDG 315 (605)
T TIGR02104 239 HENGIRVIMDVVYNHTYSRE---ESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKEYNIDG 315 (605)
T ss_pred HHCCCEEEEEEEcCCccCCC---CCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHHcCCCE
Confidence 99999999999999998542 2356665555543 23333211 11 2358999999999999999999999999999
Q ss_pred EEEecCCcccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCEEEEEecCCCCCCccccccc-------
Q 003474 454 FRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQD------- 526 (817)
Q Consensus 454 fR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~~~v~~~~P~~~~IgE~~~~~p~~~~~~~~------- 526 (817)
||||++.++ ..+||+++++.+++.+|++++|||.|...+.+......
T Consensus 316 fR~D~~~~~--------------------------~~~~~~~~~~~~~~~~p~~~ligE~w~~~~~~~~~~~~~~~~~~~ 369 (605)
T TIGR02104 316 FRFDLMGIH--------------------------DIETMNEIRKALNKIDPNILLYGEGWDLGTPLPPEQKATKANAYQ 369 (605)
T ss_pred EEEechhcC--------------------------CHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcchhhhhhhhccCC
Confidence 999999765 13589999999999999999999999765443321100
Q ss_pred -CCcc-cchhhhHHHHHHHH-----HHHhhcchhhhhhhhHHhhc----------cCcccccceecccCccccccCccch
Q 003474 527 -GGVG-FDYRLQMAIADKWI-----ELLKKRDEDWKMGAIVHTMT----------NRRWLEKCVAYAESHDQALVGDKTI 589 (817)
Q Consensus 527 -gglg-FD~~l~~~~~d~~~-----~~l~~~~~~~~~~~l~~~l~----------~~~~~~~~v~y~esHD~~r~g~~t~ 589 (817)
.+++ |++.+..++..... .+++... .....+...+. ....+..+|||++|||+.|+.++..
T Consensus 370 ~~~~~~~n~~~rd~i~~~~~~~~~~~f~~g~~--~~~~~l~~~l~~~~~~~~~~~~~~~p~~~vnyl~~HD~~~l~d~l~ 447 (605)
T TIGR02104 370 MPGIAFFNDEFRDALKGSVFHLKKKGFVSGNP--GTEETVKKGILGSIELDAVKPSALDPSQSINYVECHDNHTLWDKLS 447 (605)
T ss_pred CCceEEECCcchhhhcCCccccccCceecCCC--CcHHHHHhheeCChhhcccccccCChhheEEEEEecCCCCHHHHHH
Confidence 1111 34444333321000 1111100 01112222221 1224457899999999988865421
Q ss_pred hhhccChhHHhhhhcCCCCChhhhHHHHHHHHHHHHHHhCCCCceEeecccccCCCCCCCCCCCCCCCCCCCcCCCCCCC
Q 003474 590 AFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFS 669 (817)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~kla~~l~ltlpG~p~l~y~G~E~G~~e~~d~p~~~~~~~~~~~~~gn~~s 669 (817)
. ..+ . ...+...++.|++.+++|++||+|.| |||||+|+... +++++
T Consensus 448 ~---~~~----------~--~~~~~~~~r~rla~alllts~GiP~i-y~GdE~g~s~~-----------------g~~n~ 494 (605)
T TIGR02104 448 L---ANP----------D--ETEEQLKKRQKLATAILLLSQGIPFL-HAGQEFMRTKQ-----------------GDENS 494 (605)
T ss_pred h---hCC----------C--CCHHHHHHHHHHHHHHHHHcCCCcee-ecchhhhccCC-----------------CCCCC
Confidence 0 000 0 11234567789999999999999866 99999999652 33344
Q ss_pred Cc--ccccccCCCccccccchHHHHHHHHHHHHHHHhCCCCCCcEE-----E-eeecCCCcEEEEEcC---------cEE
Q 003474 670 YD--KCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQY-----V-SRKDEGDRVIVFERG---------NLV 732 (817)
Q Consensus 670 ~~--~~r~~~~w~~~~~~~~~~l~~f~r~Li~LR~~~~~l~~g~~~-----i-~~~~~~~~Vlaf~R~---------~ll 732 (817)
|. .+++.++|...+ .++.+++|+|+||+||+++|+|+.+... + .....+++|++|.|. .++
T Consensus 495 y~~~d~~~~ldW~~~~--~~~~~~~~~~~Li~lRk~~pal~~~~~~~i~~~~~~~~~~~~~vla~~r~~~~~~~~~~~ll 572 (605)
T TIGR02104 495 YNSPDSINQLDWDRKA--TFKDDVNYIKGLIALRKAHPAFRLSSAEDIRKHLEFLPAEPSGVIAYRLKDHANGDPWKDII 572 (605)
T ss_pred ccCCCcccccCccccc--cchHHHHHHHHHHHHHhhCccccCCChhhhcceeEEccCCCCcEEEEEEeCCcCCCCcCeEE
Confidence 42 457799998643 4678999999999999999999876321 1 112235679999992 489
Q ss_pred EEEEcCCCCcccceEEcccCCCceEEEEcCCCC
Q 003474 733 FVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDP 765 (817)
Q Consensus 733 vV~Nf~~~~~~~~~~i~v~~~g~~~~vl~sd~~ 765 (817)
||+|++. . .+.+.+|..|.|+.+++++..
T Consensus 573 Vv~N~s~-~---~~~v~lp~~~~w~~~~~~~~~ 601 (605)
T TIGR02104 573 VIHNANP-E---PVDIQLPSDGTWNVVVDNKNA 601 (605)
T ss_pred EEEeCCC-C---CeEEECCCCCCEEEEECCCcC
Confidence 9999994 2 356666667899999998653
No 13
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=100.00 E-value=9.5e-72 Score=646.99 Aligned_cols=479 Identities=26% Similarity=0.373 Sum_probs=356.0
Q ss_pred EEEEEecCCcCEEEEEeecCCCCCcccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCCccccCCccceeecc
Q 003474 185 ITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGIKDSIPAWIKFSVQ 264 (817)
Q Consensus 185 v~fr~WAP~A~~V~LvgdFN~W~~~~~pm~r~~~GvWei~lp~~~~g~~~~~~g~~yk~~~~~~~g~~~~~~~~~~~~~~ 264 (817)
|+||+|||+|++|.|+++ ...++|++.+.|+|++++|+... |..|+|+|++ .....|||++....
T Consensus 1 v~FrlwAP~A~~V~L~l~-----~~~~~m~k~~~GvW~~~v~~~~~-------G~~Y~y~v~g---~~~v~DPya~~~~~ 65 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLN-----GALHAMQRLGDGWFEITVPPVGP-------GDRYGYVLDD---GTPVPDPASRRQPD 65 (542)
T ss_pred CEEEEECCCCCEEEEEeC-----CCEEeCeECCCCEEEEEECCCCC-------CCEEEEEEee---eEEecCcccccccc
Confidence 589999999999999973 24689999999999999996544 6689999975 34678899887533
Q ss_pred CCCCCCCceEEeCCCccccccccCCCC--CCCCCceEEEeecCCCCCCCCCCCHHhhHhhhhhHHHHcCCCEEEEcCccc
Q 003474 265 APGEIPYNGIYYDPPEEEKYVFQHPQP--KKPKSLRIYEAHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQE 342 (817)
Q Consensus 265 ~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~IYE~hv~~~~~~~~~G~~~~~~~~~L~ylk~LGv~~I~LmPi~e 342 (817)
... ..|+++||. .|.|+++.+ ...++++|||+|||+|+. .|||++++ ++|||||+||||+||||||++
T Consensus 66 ~~~---~~S~V~d~~---~~~w~~~~~~~~~~~~~viYE~hv~~f~~---~G~~~gi~-~~l~yl~~LGv~~i~L~Pi~~ 135 (542)
T TIGR02402 66 GVH---GPSQVVDPD---RYAWQDTGWRGRPLEEAVIYELHVGTFTP---EGTFDAAI-EKLPYLADLGITAIELMPVAQ 135 (542)
T ss_pred CCC---CCeEEecCc---ccCCCCccccCCCccccEEEEEEhhhcCC---CCCHHHHH-HhhHHHHHcCCCEEEeCcccc
Confidence 222 258999984 588887654 234789999999999987 49999999 699999999999999999999
Q ss_pred CCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeeccccCCCccccCcCCCCCCCCccccCCCCCcccC
Q 003474 343 HSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMW 422 (817)
Q Consensus 343 ~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~l~~fdg~~~~yf~~~~~g~~~~w 422 (817)
++...+|||++++||+|+++|||++|||+||++||++||+||||+|+||++.++ ..+..|. + ||... ....|
T Consensus 136 ~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~-~~~~~~~---~-y~~~~---~~~~w 207 (542)
T TIGR02402 136 FPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYNHFGPEG-NYLPRYA---P-YFTDR---YSTPW 207 (542)
T ss_pred CCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccCCCCCcc-ccccccC---c-cccCC---CCCCC
Confidence 987778999999999999999999999999999999999999999999998764 2233332 2 66432 23445
Q ss_pred CCCCCCCCCH---HHHHHHHHHHHHHHHhCCccEEEEecCCcccccccCccccccCCcccccCcccChhHHHHHHHHHHH
Q 003474 423 DSRLFNYGSW---EVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDM 499 (817)
Q Consensus 423 ~~~~ln~~~p---eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~~~ 499 (817)
+ +.+|+.+| +||++|+++++||++||||||||||++..|.. .+++.||+++++.
T Consensus 208 g-~~~n~~~~~~~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~----------------------~~~~~~l~~~~~~ 264 (542)
T TIGR02402 208 G-AAINFDGPGSDEVRRYILDNALYWLREYHFDGLRLDAVHAIAD----------------------TSAKHILEELARE 264 (542)
T ss_pred C-CccccCCCcHHHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhcc----------------------ccHHHHHHHHHHH
Confidence 5 57999999 99999999999999999999999999987731 2356899999999
Q ss_pred hhccCCC---EEEEEecCCCCCCcccccccCCcccchhhhHHHHHHHHHHHhhcchhh------hhhhhHHhhcc-----
Q 003474 500 IHGLYPE---AVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKRDEDW------KMGAIVHTMTN----- 565 (817)
Q Consensus 500 v~~~~P~---~~~IgE~~~~~p~~~~~~~~gglgFD~~l~~~~~d~~~~~l~~~~~~~------~~~~l~~~l~~----- 565 (817)
+++++|+ +++|||.+...+..+.+...+|++||..|+..+.+.+...+......+ ....+...+..
T Consensus 265 ~~~~~p~~~~~~li~E~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~l~~~l~~g~~~~ 344 (542)
T TIGR02402 265 VHELAAELRPVHLIAESDLNDPSLVTPREDGGYGLDAQWNDDFHHALHVLLTGERQGYYADFGDPLAALAKTLRDGFVYD 344 (542)
T ss_pred HHHHCCCCceEEEEEecCCCCCcccccccCCccceEEEECchHHHHHHHHhcCCcceeecccCcCHHHHHHHHHHhcccC
Confidence 9999999 999999998888777777778889998888777766666654322111 11122222110
Q ss_pred ----------C--c----ccccceecccCccccccCccchhhhccChhHHhhhhcCCCCChhhhHHHHHHHHHHHHHHhC
Q 003474 566 ----------R--R----WLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGL 629 (817)
Q Consensus 566 ----------~--~----~~~~~v~y~esHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~kla~~l~ltl 629 (817)
+ + -+.++|+|++|||+. |+.++.-. +... .+.+++|+|.+++||+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~vnfl~nHD~~--gn~~~~~R---------l~~~--------~~~~~~~la~alllt~ 405 (542)
T TIGR02402 345 GEYSPFRGRPHGRPSGDLPPHRFVVFIQNHDQI--GNRALGER---------LSQL--------LSPGSLKLAAALLLLS 405 (542)
T ss_pred ccccccccccCCCCCCCCCHHHEEEEccCcccc--cccchhhh---------hhhc--------CCHHHHHHHHHHHHHc
Confidence 0 0 124579999999983 22222100 0000 0125789999999999
Q ss_pred CCCceEeecccccCCCCC----CCCCCCCC--CCCCC------------CcCCCCCCCCcccccccCCCccccccchHHH
Q 003474 630 GGEAYLNFMGNEFGHPEW----IDFPRGDQ--RLPNG------------QFVPGNNFSYDKCRRRFDLGDADYLRYRGMQ 691 (817)
Q Consensus 630 pG~p~l~y~G~E~G~~e~----~d~p~~~~--~~~~~------------~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~ 691 (817)
||+|+| |||||+|+.+- .|++..+. ...+| ...+.+......+|++++|...+...+.+++
T Consensus 406 pGiP~I-y~GqE~g~~~~~~ff~d~~~~~l~~~v~~gr~~e~~~~~~~~~~~pdp~~~~~~~~~~~~W~~~~~~~~~~~~ 484 (542)
T TIGR02402 406 PYTPLL-FMGEEYGATTPFQFFTDHPDPELAQAVREGRKKEFARFGWDPEDVPDPQDEETFLRSKLDWAEAESGEHARWL 484 (542)
T ss_pred CCCcee-eccHhhcCCCCCccccCCCCHHHHHHHHHhHHHHHHhcccccccCCCCCchhhHhhccCCcccccccchHHHH
Confidence 999877 99999999642 12211000 00000 0112222233346788999887655678999
Q ss_pred HHHHHHHHHHHHhCCCCCCc-EEEee-ecCCCcEEEEEc--CcEEEEEEcCC
Q 003474 692 EFDRAMQHLEEKYGFMTSEH-QYVSR-KDEGDRVIVFER--GNLVFVFNFHW 739 (817)
Q Consensus 692 ~f~r~Li~LR~~~~~l~~g~-~~i~~-~~~~~~Vlaf~R--~~llvV~Nf~~ 739 (817)
+|+|+||+|||++++|+.+. ..+.. ...++.|+++.. +.++|++|+++
T Consensus 485 ~~yr~Li~lRk~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~N~~~ 536 (542)
T TIGR02402 485 AFYRDLLALRRELPVLLLPGARALEVVVDEDPGWVAVRFGRGELVLAANLST 536 (542)
T ss_pred HHHHHHHHHhccCccccCCCcccceeeecCCCCEEEEEECCCeEEEEEeCCC
Confidence 99999999999999986542 22222 134577888876 57999999994
No 14
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=100.00 E-value=1.5e-69 Score=640.34 Aligned_cols=554 Identities=19% Similarity=0.272 Sum_probs=382.7
Q ss_pred ccCCcEEeCCcEEEEEecCCcCEEEEEeecCCCCC---cccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCC--
Q 003474 174 EKFGFIRSDTGITYREWAPGAKSASLIGDFNNWNP---NADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTP-- 248 (817)
Q Consensus 174 ~~lG~~~~~~gv~fr~WAP~A~~V~LvgdFN~W~~---~~~pm~r~~~GvWei~lp~~~~g~~~~~~g~~yk~~~~~~-- 248 (817)
.+||+++.++|++|++|||+|++|+|+. |++++. ..++|.+...|||+++||+..+ |..|+|+++.+
T Consensus 5 ~~LGa~~~~~g~~F~vwap~A~~V~L~l-~~~~~~~~~~~~~m~~~~~gvW~~~v~~~~~-------g~~Y~yrv~g~~~ 76 (688)
T TIGR02100 5 FPLGATWDGQGVNFALFSANAEKVELCL-FDAQGEKEEARLPLPERTDDIWHGYLPGAQP-------GQLYGYRVHGPYD 76 (688)
T ss_pred cCCCeEEeCCcEEEEEECCCCCEEEEEE-EcCCCCceeeEEecccCCCCEEEEEECCCCC-------CCEEEEEEeeeeC
Confidence 4799999999999999999999999986 666543 2568999889999999997654 66899999863
Q ss_pred --CCc-----cccCCccceeeccCCC-------------------------CCCCceEEeCCCccccccccCC--CCC-C
Q 003474 249 --SGI-----KDSIPAWIKFSVQAPG-------------------------EIPYNGIYYDPPEEEKYVFQHP--QPK-K 293 (817)
Q Consensus 249 --~g~-----~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~d~~~~~~~~~~~~--~~~-~ 293 (817)
.|. ...+||||+.+..... .....++++|+ .|.|++. +|. .
T Consensus 77 ~~~g~~f~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~d~----~~~w~~~~~~p~~~ 152 (688)
T TIGR02100 77 PENGHRFNPNKLLLDPYAKALDGDLIWDDALFGYRIGHPDQDLSFDERDSAPGMPKAVVVDP----DFDWGGDEQRPRTP 152 (688)
T ss_pred CCCCcccCcCceecCcCceeecCCCcccccccccccccccccccccccccccccCceEEeCC----CCCCCCcccCCCCC
Confidence 231 3568999998764421 00125778776 3788754 333 3
Q ss_pred CCCceEEEeecCCCCCC------CCCCCHHhhHhh-hhhHHHHcCCCEEEEcCcccCCCC---------CCCCCcccccc
Q 003474 294 PKSLRIYEAHVGMSSTE------PIINTYANFRDD-VLPRIKRLGYNAVQIMAVQEHSYY---------ASFGYHVTNFF 357 (817)
Q Consensus 294 ~~~~~IYE~hv~~~~~~------~~~G~~~~~~~~-~L~ylk~LGv~~I~LmPi~e~~~~---------~s~GY~v~dy~ 357 (817)
.++++|||+||++|+.. ...|||+||++. +|||||+||||+||||||++++.. .+|||++.|||
T Consensus 153 ~~d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~ 232 (688)
T TIGR02100 153 WEDTIIYEAHVKGFTQLHPDIPEELRGTYAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFF 232 (688)
T ss_pred ccccEEEEEEhHHhcCCCCCCCcccccCHHHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCccccc
Confidence 47899999999999853 246999999953 599999999999999999998642 36999999999
Q ss_pred CCCCCC---CCHHHHHHHHHHHHHcCcEEEEeeeccccCCCccccC-cCCCCCCC-CccccCCC--CC--cccCCCCCCC
Q 003474 358 APSSRC---GTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGL-NMFDGTDG-HYFHSGSR--GY--HWMWDSRLFN 428 (817)
Q Consensus 358 avd~~~---Gt~edlk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~l-~~fdg~~~-~yf~~~~~--g~--~~~w~~~~ln 428 (817)
+|+++| |+.+|||+||++||++||+||||+|+||++..+..+. ..+.+.++ .||+.... +. .+....+++|
T Consensus 233 a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln 312 (688)
T TIGR02100 233 APEPRYLASGQVAEFKTMVRALHDAGIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLN 312 (688)
T ss_pred ccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCcccccc
Confidence 999999 6799999999999999999999999999998653322 23444332 45543322 21 1112347899
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCccEEEEecCCcccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCEE
Q 003474 429 YGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAV 508 (817)
Q Consensus 429 ~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~~~v~~~~P~~~ 508 (817)
+++|+||++|+++++||++||||||||||++..|.....+. + ....++++++.. ...|+++
T Consensus 313 ~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~----------------~-~~~~~~~~i~~d--~~~~~~~ 373 (688)
T TIGR02100 313 LSHPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYGF----------------D-MLSGFFTAIRQD--PVLAQVK 373 (688)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCCC----------------c-ccHHHHHHHHhC--cccCCeE
Confidence 99999999999999999999999999999999884321111 0 123577777653 4678999
Q ss_pred EEEecCCCCCCcccccccCCcccc---hhhhHHHHHHHHHHHhhcchhhhhhhhHHhhcc--------Ccccccceeccc
Q 003474 509 SIGEDVSGMPTFCIPVQDGGVGFD---YRLQMAIADKWIELLKKRDEDWKMGAIVHTMTN--------RRWLEKCVAYAE 577 (817)
Q Consensus 509 ~IgE~~~~~p~~~~~~~~gglgFD---~~l~~~~~d~~~~~l~~~~~~~~~~~l~~~l~~--------~~~~~~~v~y~e 577 (817)
+|||.|...+. .+..+ .|+ ..||..+.+.++.++++... ....+...+.. .+.+..+|||++
T Consensus 374 ligE~W~~~~~---~~~~~--~~~~~~~~~Nd~frd~ir~f~~g~~~--~~~~~~~~l~gs~~~~~~~~~~~~~~iNyv~ 446 (688)
T TIGR02100 374 LIAEPWDIGPG---GYQVG--NFPPGWAEWNDRYRDDMRRFWRGDAG--MIGELANRLTGSSDLFEHNGRRPWASINFVT 446 (688)
T ss_pred EEEeeecCCCC---ccccc--CCCCceEEecHHHHHHHHHHHcCCCC--cHHHHHHHHhCCHhhccccCCCcCEEEEEEe
Confidence 99999964332 11111 233 34566667777777765321 12233333321 123567899999
Q ss_pred CccccccCccchhhh---ccChh---------HHhhh--hcCCCCChhhhHHHHHHHHHHHHHHhCCCCceEeecccccC
Q 003474 578 SHDQALVGDKTIAFW---LMDKD---------MYDFM--ALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFG 643 (817)
Q Consensus 578 sHD~~r~g~~t~~~~---~~~~~---------~~~~~--~~~~~~~~~~~~~~al~kla~~l~ltlpG~p~l~y~G~E~G 643 (817)
|||+.++.+....-. ..+++ .-+.. .+.+....+.+...+++|++.+++|++||+|+| |||+|||
T Consensus 447 ~HD~~tl~D~~~~~~khn~~nge~n~dg~~~N~S~n~g~eG~~~~~~~~~~r~~~~r~~~a~l~~s~GiP~i-~~GdE~g 525 (688)
T TIGR02100 447 AHDGFTLRDLVSYNEKHNEANGENNRDGHNDNYSWNCGVEGPTDDPAINALRRRQQRNLLATLLLSQGTPML-LAGDEFG 525 (688)
T ss_pred CCCCchHHHHHHhhccchhhccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcee-eecHhhc
Confidence 999988765321100 00000 00000 001111112334467889999999999999877 9999999
Q ss_pred CCCCCCCCCCCCCCCCCCcCCCCCCCCcc--cccccCCCccccccchHHHHHHHHHHHHHHHhCCCCCCcE---------
Q 003474 644 HPEWIDFPRGDQRLPNGQFVPGNNFSYDK--CRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQ--------- 712 (817)
Q Consensus 644 ~~e~~d~p~~~~~~~~~~~~~gn~~s~~~--~r~~~~w~~~~~~~~~~l~~f~r~Li~LR~~~~~l~~g~~--------- 712 (817)
++. .|++++|.. .++.++|...+ .+++|++|+|+||+|||++|+|+.+..
T Consensus 526 ~t~-----------------~G~~n~y~~~~~~~~~dW~~~~--~~~~l~~~~k~Li~lRk~~~~l~~~~~~~~~~~~~~ 586 (688)
T TIGR02100 526 RTQ-----------------QGNNNAYCQDNEIGWVDWSLDE--GDDELLAFTKKLIALRKAHPVLRRERFFDGRNEADG 586 (688)
T ss_pred cCC-----------------CCCCCCccCCCcccccCccccc--ccHHHHHHHHHHHHHHHhCchhcccccccCCcccCC
Confidence 976 267777754 45789998654 578999999999999999998875411
Q ss_pred --EEeee-------------cCCCcEEEEEc------------CcEEEEEEcCCCCcccceEEcccCC-CceEEEEcCCC
Q 003474 713 --YVSRK-------------DEGDRVIVFER------------GNLVFVFNFHWNSSYSDYRVGCLKP-GKYKIVLDSDD 764 (817)
Q Consensus 713 --~i~~~-------------~~~~~Vlaf~R------------~~llvV~Nf~~~~~~~~~~i~v~~~-g~~~~vl~sd~ 764 (817)
.+.+. .....+|+|.. +.++|++|.+. ....+.| |.. .+|+.+++|..
T Consensus 587 ~~~v~~~~~~G~~~~~~~w~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~~N~~~--~~~~~~l--P~~~~~w~~~~dt~~ 662 (688)
T TIGR02100 587 LKDVTWLNADGEPMTEEDWENPETRLLCMVLSDMDPGGDPGADDSLLLLLNAGP--EPVPFKL--PGGGGRWELVLDTAD 662 (688)
T ss_pred CCceEEeCCCCCcCChhhcCCCCCCEEEEEEeCCccCCCCCCCCeEEEEECCCC--CCeEEEC--CCCCCcEEEEecCCC
Confidence 12221 12347888875 14899999984 2334444 432 58999999854
Q ss_pred CCcCCccccCCCcceeccccccCCCCeEEEEEEcCceEEEEE
Q 003474 765 PLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYA 806 (817)
Q Consensus 765 ~~~gG~~~~~~~~~~~~~~~~~~~~~~~i~l~lpp~s~~Vl~ 806 (817)
.. ... . .. ...-.+.|||+|++||.
T Consensus 663 ~~--~~~-~----~~----------~~~~~~~v~~~s~~vl~ 687 (688)
T TIGR02100 663 EE--APG-I----HL----------DAGQEAELPARSVLLLR 687 (688)
T ss_pred CC--Ccc-c----cc----------cCCCEEEEcCCEEEEEe
Confidence 21 110 0 00 00135889999999986
No 15
>PRK03705 glycogen debranching enzyme; Provisional
Probab=100.00 E-value=1.9e-68 Score=626.47 Aligned_cols=548 Identities=20% Similarity=0.286 Sum_probs=370.3
Q ss_pred cccCCcEEeCCcEEEEEecCCcCEEEEEeecCCCC-CcccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCC---
Q 003474 173 YEKFGFIRSDTGITYREWAPGAKSASLIGDFNNWN-PNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTP--- 248 (817)
Q Consensus 173 y~~lG~~~~~~gv~fr~WAP~A~~V~LvgdFN~W~-~~~~pm~r~~~GvWei~lp~~~~g~~~~~~g~~yk~~~~~~--- 248 (817)
..+||+++.++|++|+||||+|++|.|+. |+++. ...++|.+.+.|||+++||+... |..|+|+|+.+
T Consensus 9 ~~pLGa~~~~~g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~gvW~~~v~~~~~-------G~~Y~yrv~g~~~p 80 (658)
T PRK03705 9 PTPLGAHYDGQGVNFTLFSAHAERVELCV-FDENGQEQRYDLPARSGDIWHGYLPGARP-------GLRYGYRVHGPWQP 80 (658)
T ss_pred CCCcceEEeCCCEEEEEECCCCCEEEEEE-EcCCCCeeeEeeeeccCCEEEEEECCCCC-------CCEEEEEEccccCc
Confidence 45899999999999999999999999998 77653 34678988889999999997544 67999999864
Q ss_pred -CC-----ccccCCccceeeccCCCC------------------CCCceEEeCCCccccccccCCCC-C-CCCCceEEEe
Q 003474 249 -SG-----IKDSIPAWIKFSVQAPGE------------------IPYNGIYYDPPEEEKYVFQHPQP-K-KPKSLRIYEA 302 (817)
Q Consensus 249 -~g-----~~~~~~~~~~~~~~~~~~------------------~~~~~~~~d~~~~~~~~~~~~~~-~-~~~~~~IYE~ 302 (817)
.| ....+||||+.+...... ....+++.|+ +|.|++..+ . ..++++|||+
T Consensus 81 ~~g~~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~----~~~W~~~~~p~~~~~~~vIYE~ 156 (658)
T PRK03705 81 AQGHRFNPAKLLIDPCARQVEGEVKDDPRLHGGHDEPDYRDNAAIAPKCVVVDD----HYDWEDDAPPRTPWGSTVIYEA 156 (658)
T ss_pred ccCcccCCCcEecCcCceEEccccccCccccccccCCccccccccCCceEEecC----CCCCCCCCCCCCCccccEEEEE
Confidence 12 134689999987653210 0124556553 588987543 2 2478999999
Q ss_pred ecCCCCC-C-----CCCCCHHhhHh-hhhhHHHHcCCCEEEEcCcccCCCC---------CCCCCccccccCCCCCCCCH
Q 003474 303 HVGMSST-E-----PIINTYANFRD-DVLPRIKRLGYNAVQIMAVQEHSYY---------ASFGYHVTNFFAPSSRCGTP 366 (817)
Q Consensus 303 hv~~~~~-~-----~~~G~~~~~~~-~~L~ylk~LGv~~I~LmPi~e~~~~---------~s~GY~v~dy~avd~~~Gt~ 366 (817)
|||+|+. + ...|+|+++++ .+|||||+||||+||||||++++.. .+|||++.|||+|+++|||.
T Consensus 157 hvr~ft~~~~~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~ 236 (658)
T PRK03705 157 HVRGLTYLHPEIPVEIRGTYAALGHPVMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASG 236 (658)
T ss_pred ehhhhcccCCCCCccccccHHHhhcccchHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCC
Confidence 9999985 2 23599999995 3699999999999999999998542 57999999999999999995
Q ss_pred -----HHHHHHHHHHHHcCcEEEEeeeccccCCCccccC-cCCCCCC-CCccccCCCCCc--ccCCCCCCCCCCHHHHHH
Q 003474 367 -----DDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGL-NMFDGTD-GHYFHSGSRGYH--WMWDSRLFNYGSWEVLRF 437 (817)
Q Consensus 367 -----edlk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~l-~~fdg~~-~~yf~~~~~g~~--~~w~~~~ln~~~peV~~~ 437 (817)
+|||+||++||++||+||||+|+||++.....+. ..+.+.+ ..||.....+.. |..+.++||+++|+|+++
T Consensus 237 ~~~~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~ 316 (658)
T PRK03705 237 PETALDEFRDAVKALHKAGIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDW 316 (658)
T ss_pred CcchHHHHHHHHHHHHHCCCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHH
Confidence 7999999999999999999999999987432221 1233333 234443333332 222447999999999999
Q ss_pred HHHHHHHHHHhCCccEEEEecCCcccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCEEEEEecCCCC
Q 003474 438 LLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGM 517 (817)
Q Consensus 438 l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~~~v~~~~P~~~~IgE~~~~~ 517 (817)
|+++++||++||||||||||++.+|... ..|. . ...+++.++. ..+.|++++|||.|...
T Consensus 317 iid~l~~W~~e~gVDGFRfD~a~~l~~~-----~~~~------------~-~~~~~~ai~~--d~vl~~~~ligE~Wd~~ 376 (658)
T PRK03705 317 AIDCLRYWVETCHVDGFRFDLATVLGRT-----PEFR------------Q-DAPLFTAIQN--DPVLSQVKLIAEPWDIG 376 (658)
T ss_pred HHHHHHHHHHHhCCCEEEEEcHhhhCcC-----cccc------------h-hhHHHHHHhh--CccccceEEEEecccCC
Confidence 9999999999999999999999988421 1111 0 0123444432 24568999999999654
Q ss_pred CCcccccccCCcccc---hhhhHHHHHHHHHHHhhcchhhhhhhhHHhhc--------cCcccccceecccCccccccCc
Q 003474 518 PTFCIPVQDGGVGFD---YRLQMAIADKWIELLKKRDEDWKMGAIVHTMT--------NRRWLEKCVAYAESHDQALVGD 586 (817)
Q Consensus 518 p~~~~~~~~gglgFD---~~l~~~~~d~~~~~l~~~~~~~~~~~l~~~l~--------~~~~~~~~v~y~esHD~~r~g~ 586 (817)
+... ..+. |+ ..||..+.+.++.++..... ....+...+. ..+.+.++|||+++||+.++.+
T Consensus 377 ~~~~---~~g~--~~~~~~~~Nd~fRd~ir~f~~~~~~--~~~~~~~~l~gs~~~~~~~~~~p~~siNyv~~HD~~TL~D 449 (658)
T PRK03705 377 PGGY---QVGN--FPPPFAEWNDHFRDAARRFWLHGDL--PLGEFAGRFAASSDVFKRNGRLPSASINLVTAHDGFTLRD 449 (658)
T ss_pred CChh---hhcC--CCcceEEEchHHHHHHHHHHccCCC--cHHHHHHHHhcchhhccccCCCCCeEEEEEEeCCCccHHH
Confidence 3211 1111 11 12344445555555543211 1111221221 2235678999999999987765
Q ss_pred cchhhhc---cChhH---------Hhhhh--cCCCCChhhhHHHHHHHHHHHHHHhCCCCceEeecccccCCCCCCCCCC
Q 003474 587 KTIAFWL---MDKDM---------YDFMA--LDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPR 652 (817)
Q Consensus 587 ~t~~~~~---~~~~~---------~~~~~--~~~~~~~~~~~~~al~kla~~l~ltlpG~p~l~y~G~E~G~~e~~d~p~ 652 (817)
....... .+++. -+... +......+.....+++|++.+++|+++|+|+| |||+|||++.
T Consensus 450 ~~~~~~~hn~~nge~n~dg~~~n~s~n~g~eg~~~~~~~~~~r~~~~r~~~a~l~~sqG~P~i-~~GdE~grtq------ 522 (658)
T PRK03705 450 CVCFNQKHNEANGEENRDGTNNNYSNNHGKEGLGADLDLVERRRASIHALLTTLLLSQGTPML-LAGDEHGHSQ------ 522 (658)
T ss_pred HHhhhccchhhcccccccccccccccccCccCCCccHHHHHHHHHHHHHHHHHHHHcCCchHH-HhhHHhccCC------
Confidence 3211000 00000 00000 01111123344567888999999999999877 9999999976
Q ss_pred CCCCCCCCCcCCCCCCCCcc--cccccCCCccccccchHHHHHHHHHHHHHHHhCCCCCCc---------EEEeeec---
Q 003474 653 GDQRLPNGQFVPGNNFSYDK--CRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEH---------QYVSRKD--- 718 (817)
Q Consensus 653 ~~~~~~~~~~~~gn~~s~~~--~r~~~~w~~~~~~~~~~l~~f~r~Li~LR~~~~~l~~g~---------~~i~~~~--- 718 (817)
.||+++|+. ..+.++|... .+.+++|+|+||+|||++|+|+... .|+....
T Consensus 523 -----------~G~nN~y~~~~~i~~~dW~~~----~~~l~~f~k~Li~lRk~~~~l~~~~~~~~~~~~~~w~~~~~~~~ 587 (658)
T PRK03705 523 -----------HGNNNAYCQDNALTWLDWSQA----DRGLTAFTAALIHLRQRIPALTQNRWWEEGDGNVRWLNRQAQPL 587 (658)
T ss_pred -----------CCCCCCccCCCCccccccchh----hhHHHHHHHHHHHHHHhChhhcccccccCCCCCeEEeCCCCCcC
Confidence 377777754 3567999854 3699999999999999999986432 2221111
Q ss_pred ------CCCcEEEEEc-CcEEEEEEcCCCCcccceEEcccCCCceEEEEcCCCCCcCCccccCCCcceeccccccCCCCe
Q 003474 719 ------EGDRVIVFER-GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPH 791 (817)
Q Consensus 719 ------~~~~Vlaf~R-~~llvV~Nf~~~~~~~~~~i~v~~~g~~~~vl~sd~~~~gG~~~~~~~~~~~~~~~~~~~~~~ 791 (817)
.....++|.- +.++|++|-+. .. ..+.+|. ++|+.+++.|.. +.. +.
T Consensus 588 ~~~~w~~~~~~~~~~~~~~~~v~~N~~~--~~--~~~~lp~-~~w~~~~~~~~~---~~~--------------~~---- 641 (658)
T PRK03705 588 SADEWQQGPKQLQILLSDRWLIAINATL--EV--TEIVLPE-GEWHAIPPFAGE---DNP--------------VI---- 641 (658)
T ss_pred ChhHhCCcceEEEEEECCCEEEEECCCC--CC--eEEECCC-cceEEEEccCCC---ccc--------------cc----
Confidence 1134566654 67999999884 22 3444454 789999654432 010 01
Q ss_pred EEEEEEcCceEEEEEE
Q 003474 792 SFLVYAPSRTAVVYAL 807 (817)
Q Consensus 792 ~i~l~lpp~s~~Vl~~ 807 (817)
...+.+|++|.+|+..
T Consensus 642 ~~~~~~~~~~~~~~~~ 657 (658)
T PRK03705 642 TAVWHGPAHGVCVFQR 657 (658)
T ss_pred CceeeecCcEEEEEec
Confidence 1346789999998863
No 16
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=100.00 E-value=6e-68 Score=642.21 Aligned_cols=573 Identities=19% Similarity=0.273 Sum_probs=382.3
Q ss_pred cCCcEEeCCc-EEEEEecCCcCEEEEEe-ecCCCCC--cccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCC
Q 003474 175 KFGFIRSDTG-ITYREWAPGAKSASLIG-DFNNWNP--NADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 250 (817)
Q Consensus 175 ~lG~~~~~~g-v~fr~WAP~A~~V~Lvg-dFN~W~~--~~~pm~r~~~GvWei~lp~~~~g~~~~~~g~~yk~~~~~~~g 250 (817)
+||+++.++| ++|++|||+|++|.|++ |+++|+. ..++|.+.+.|||+++||+...|.. .-+|..|+|+|...+.
T Consensus 318 ~LGa~~~~~g~v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~~~GvW~v~v~~~~~G~~-d~~G~~Y~Y~V~~~~~ 396 (1111)
T TIGR02102 318 KLGAQLHEDGTVTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKGDRGVWEVQLTKENTGID-SLTGYYYHYEITRGGD 396 (1111)
T ss_pred CCCCEEecCCCEEEEEECCCCCEEEEEEEeCCCCCCceeeEecccCCCCEEEEEECCcccCcc-cCCCceEEEEEECCCc
Confidence 7999998777 89999999999999997 5566654 3689999999999999996443321 2368899999987655
Q ss_pred ccccCCccceeeccCCC------CCCCceEEeCCCcc--ccccccCCC-CCCCCCceEEEeecCCCCCCC--------CC
Q 003474 251 IKDSIPAWIKFSVQAPG------EIPYNGIYYDPPEE--EKYVFQHPQ-PKKPKSLRIYEAHVGMSSTEP--------II 313 (817)
Q Consensus 251 ~~~~~~~~~~~~~~~~~------~~~~~~~~~d~~~~--~~~~~~~~~-~~~~~~~~IYE~hv~~~~~~~--------~~ 313 (817)
....++||++.+..... ....+++++|++.. +.|.|.+.. ...+++++|||+|||+|+.+. ..
T Consensus 397 ~~~~~DPYA~al~~~n~~~~~~~~~~~ks~vvD~~~~~p~~~~~~~~~~~~~~~d~vIYElHVrdFt~d~~~~~~~~~~~ 476 (1111)
T TIGR02102 397 KVLALDPYAKSLAAWNDATSDDQIKVAKAAFVDPSSLGPQELDFAKIENFKKREDAIIYEAHVRDFTSDPAIAGDLTAQF 476 (1111)
T ss_pred eEEEeChhheEEeccCcccccccCCCCceEEEcCcccCccccccccccccCCccceEEEEEechhhCcCCCCCcccccCC
Confidence 56788999997653211 01236788888543 347777532 234689999999999998542 36
Q ss_pred CCHHhhHhhhhhHHHHcCCCEEEEcCcccCC------------------CCCCCCCccccccCCCCCCCC--------HH
Q 003474 314 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHS------------------YYASFGYHVTNFFAPSSRCGT--------PD 367 (817)
Q Consensus 314 G~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~------------------~~~s~GY~v~dy~avd~~~Gt--------~e 367 (817)
|+|++|+ ++|||||+|||||||||||++++ ...+|||++.+||+|+++||+ .+
T Consensus 477 Gtf~gl~-ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~ 555 (1111)
T TIGR02102 477 GTFAAFV-EKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIA 555 (1111)
T ss_pred cCHHHHH-HhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccccccccCCcCccccHH
Confidence 9999999 69999999999999999999742 112599999999999999998 58
Q ss_pred HHHHHHHHHHHcCcEEEEeeeccccCCCccccCcCCCCCCCCcccc-CCCCC-cccCCCCCCCCCCHHHHHHHHHHHHHH
Q 003474 368 DLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHS-GSRGY-HWMWDSRLFNYGSWEVLRFLLSNARWW 445 (817)
Q Consensus 368 dlk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~l~~fdg~~~~yf~~-~~~g~-~~~w~~~~ln~~~peV~~~l~~~l~~W 445 (817)
|||+||++||++||+||||||+||++..+ .|++..+.||+. +..|. ...|+...+|..+++||++|+++++||
T Consensus 556 EfK~LV~alH~~GI~VILDVVyNHt~~~~-----~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yW 630 (1111)
T TIGR02102 556 EFKNLINEIHKRGMGVILDVVYNHTAKVY-----IFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYL 630 (1111)
T ss_pred HHHHHHHHHHHCCCEEEEecccccccccc-----cccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999998764 466666666653 22232 234566789999999999999999999
Q ss_pred HHhCCccEEEEecCCcccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCEEEEEecCCCCCCc----c
Q 003474 446 LEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTF----C 521 (817)
Q Consensus 446 l~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~~~v~~~~P~~~~IgE~~~~~p~~----~ 521 (817)
++||||||||||++.++ ..++++.++..++++.|++++|||.|...... +
T Consensus 631 v~ey~VDGFRfDl~g~~--------------------------d~~~~~~~~~~l~~~dP~~~liGE~W~~~~g~~~~~~ 684 (1111)
T TIGR02102 631 VDEFKVDGFRFDMMGDH--------------------------DAASIEIAYKEAKAINPNIIMIGEGWRTYAGDEGDPV 684 (1111)
T ss_pred HHhcCCcEEEEeccccC--------------------------CHHHHHHHHHHHHHhCcCEEEEEecccccCCCCcccc
Confidence 99999999999998643 13478888888999999999999999742110 0
Q ss_pred cccccCC------c-ccchhhhHHHHHHHH-----HHHhhcchhhhhhhhHHhhcc------CcccccceecccCccccc
Q 003474 522 IPVQDGG------V-GFDYRLQMAIADKWI-----ELLKKRDEDWKMGAIVHTMTN------RRWLEKCVAYAESHDQAL 583 (817)
Q Consensus 522 ~~~~~gg------l-gFD~~l~~~~~d~~~-----~~l~~~~~~~~~~~l~~~l~~------~~~~~~~v~y~esHD~~r 583 (817)
.+..... + -|+..++.++..... .++.+ ....+..+...+.. ...+.++|||++|||+.+
T Consensus 685 ~~~~~~~~~~~~~ig~FnD~~Rd~irg~~~~~~~~gfi~G--~~~~~~~l~~~i~g~~~~~~~~~P~~~VnYV~aHDn~T 762 (1111)
T TIGR02102 685 QAADQDWMKYTETVGVFSDDIRNELKSGFPNEGQPAFITG--GARNVQGIFKNIKAQPHNFEADSPGDVVQYIAAHDNLT 762 (1111)
T ss_pred cccchhhHhcCCcccEecHHHHHHHhcccccccccccccC--CcccHHHHHHhhcCCccccccCCcccEEEEEecCCCCc
Confidence 1000011 1 133333322221000 00000 00111223333322 134667899999999998
Q ss_pred cCccchhhhccChhHHhhhhcCCCCChhhhHHHHHHHHHHHHHHhCCCCceEeecccccCCCCCCCCCC-----CCCCCC
Q 003474 584 VGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPR-----GDQRLP 658 (817)
Q Consensus 584 ~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~kla~~l~ltlpG~p~l~y~G~E~G~~e~~d~p~-----~~~~~~ 658 (817)
+.|+... - +.. +...........++.|++.+++|+.+|+|+| ++||||+++...+-+. .+...+
T Consensus 763 L~D~l~~-~-~~~--------~~~~~e~~~~~~~r~rla~~llllSQGiPfi-~aGqEf~RTK~gnnn~y~~~~~~~~~~ 831 (1111)
T TIGR02102 763 LHDVIAQ-S-IKK--------DPKVAENQEEIHRRIRLGNLMVLTSQGTAFI-HSGQEYGRTKQFRNPDYRTPVSEDKVP 831 (1111)
T ss_pred hHhhhhh-c-ccc--------CcccccchHHHHHHHHHHHHHHHHhCcHhhh-hcchhhhcccCCCcccccccccccccc
Confidence 8664211 0 000 0000000012346778888999999999877 9999999975332000 000000
Q ss_pred ---------CCCcC---CCCCCCCcc--cccccCCCcccc----ccchHHHHHHHHHHHHHHHhCCCCCCc-----EEEe
Q 003474 659 ---------NGQFV---PGNNFSYDK--CRRRFDLGDADY----LRYRGMQEFDRAMQHLEEKYGFMTSEH-----QYVS 715 (817)
Q Consensus 659 ---------~~~~~---~gn~~s~~~--~r~~~~w~~~~~----~~~~~l~~f~r~Li~LR~~~~~l~~g~-----~~i~ 715 (817)
.|..+ ....+||+. ..+.++|..... +-+..+++|+|.||+||+++|+++.+. ..+.
T Consensus 832 ~~~~~~~~~~~~~~~~~~~~~nSY~s~d~iN~lDW~~~~~~~~~~~~~~~~~y~~~LI~lRk~~~~fr~~~~~~i~~~v~ 911 (1111)
T TIGR02102 832 NKSTLMTDVDGNPFRYPYFIHDSYDSSDAINRFDWEKATDADAYPINNKTRDYTAGLIELRRSTDAFRLGSKALVDRKVT 911 (1111)
T ss_pred cccccccccccccccccccccccccCCCccceecccccccccccchhHHHHHHHHHHHHHHhcCccccccchhhhcCcEE
Confidence 11110 122567743 467899987632 223689999999999999999986432 1122
Q ss_pred eecC--------CCcEEEEEc-----CcEEEEEEcCCCCcccceEEcccCC----CceEEEEcCCCCCcCCccccCCCcc
Q 003474 716 RKDE--------GDRVIVFER-----GNLVFVFNFHWNSSYSDYRVGCLKP----GKYKIVLDSDDPLFGGYKRLDHNAE 778 (817)
Q Consensus 716 ~~~~--------~~~Vlaf~R-----~~llvV~Nf~~~~~~~~~~i~v~~~----g~~~~vl~sd~~~~gG~~~~~~~~~ 778 (817)
+... .+.|++|.- +.++|++|.++ . . ..+.+|.. ..|+.+++.+.. |...+.....
T Consensus 912 ~~~~~g~~~~~~~~~~ia~~~~~~~~~~~~V~~Na~~-~-~--~~~~lp~~~~~~~~~~v~~~~~~~---g~~~~~~~~~ 984 (1111)
T TIGR02102 912 LITIPGQNEIEEEDLVVAYQIVATNGDIYAVFVNADD-K-A--RTLTLGEDYAHLTVGEVVVDAEQA---GVTGIAEPKG 984 (1111)
T ss_pred EECCCCCcccccCCcEEEEEEecCCCCeEEEEECCCC-C-C--EEEECCCCcccccceEEEEccccc---Cccccccccc
Confidence 2111 267899985 36899999884 2 2 33444432 378888876432 2211110000
Q ss_pred eeccccccCCCCeEEEEEEcCceEEEEEEeC
Q 003474 779 YFSLEGWYDDQPHSFLVYAPSRTAVVYALAD 809 (817)
Q Consensus 779 ~~~~~~~~~~~~~~i~l~lpp~s~~Vl~~~~ 809 (817)
+ .. . .-.++|||+|++||+...
T Consensus 985 ~-----~~--~--~~~~~v~~~s~~V~~~~~ 1006 (1111)
T TIGR02102 985 V-----EL--T--AEGLKLDPLTAAVVRVGG 1006 (1111)
T ss_pred c-----cc--c--CCeEEEcCcEEEEEEecc
Confidence 0 00 0 125899999999998764
No 17
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=100.00 E-value=3e-64 Score=599.95 Aligned_cols=548 Identities=17% Similarity=0.216 Sum_probs=365.3
Q ss_pred cCCcEEeCCcEEEEEecCCcCEEEEEeecCCCC-CcccccccC-CCceEEEEeCCCCCCCCCCCCCCEEEEEEeCC---C
Q 003474 175 KFGFIRSDTGITYREWAPGAKSASLIGDFNNWN-PNADIMTQN-EFGVWEIFLPNNADGSPPIPHGSRVKIHMDTP---S 249 (817)
Q Consensus 175 ~lG~~~~~~gv~fr~WAP~A~~V~LvgdFN~W~-~~~~pm~r~-~~GvWei~lp~~~~g~~~~~~g~~yk~~~~~~---~ 249 (817)
.||+++.++|++|++|||+|++|.|++..++++ ...++|+++ +.|||++++|+.+. |..|+|+|... .
T Consensus 127 ~LGa~~~~~gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~~~~GVWsv~v~g~~~-------G~~Y~Y~V~v~~p~~ 199 (898)
T TIGR02103 127 SLGATLTDSGVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRDSTSGVWSAEGGSSWK-------GAYYRYEVTVYHPST 199 (898)
T ss_pred CCCcEEeCCcEEEEEECCCCCEEEEEEEcCCCCccceEeCccCCCCCEEEEEECcCCC-------CCEeEEEEEEecCCC
Confidence 499999999999999999999999998666663 456899987 78999999997665 56889988732 2
Q ss_pred Cc---cccCCccceeeccCCCCCCCceEEeCCCc--cccccccCC---CCC--CCCCceEEEeecCCCCCC------CCC
Q 003474 250 GI---KDSIPAWIKFSVQAPGEIPYNGIYYDPPE--EEKYVFQHP---QPK--KPKSLRIYEAHVGMSSTE------PII 313 (817)
Q Consensus 250 g~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~---~~~--~~~~~~IYE~hv~~~~~~------~~~ 313 (817)
|. ....|||++.... ++. .++++|+.. ..+..|... +|. .+++++|||+|||+||.. ...
T Consensus 200 G~v~~~~v~DPYA~als~-n~~---~S~VvDl~~~~~~p~~W~~~~~p~p~~~~~~d~iIYElHVRDFS~~d~s~~~~~r 275 (898)
T TIGR02103 200 GKVETYLVTDPYSVSLSA-NSE---YSQVVDLNDPALKPEGWDALAMPKPQLASFADMVLYELHIRDFSANDESVPAELR 275 (898)
T ss_pred CeECCeEEeCcCcceEcC-CCC---CeEEeCCccccCCCcchhhcccccCCcCCCcccEEEEEeccccccCCCCCCcCcC
Confidence 42 3568999998753 332 588888753 356677643 232 468999999999999842 246
Q ss_pred CCHHhhHhh------hhhHHHHcCCCEEEEcCcccCCC------------------------------------------
Q 003474 314 NTYANFRDD------VLPRIKRLGYNAVQIMAVQEHSY------------------------------------------ 345 (817)
Q Consensus 314 G~~~~~~~~------~L~ylk~LGv~~I~LmPi~e~~~------------------------------------------ 345 (817)
|+|.++++. .|+||++||||||+||||+++..
T Consensus 276 GtYla~tE~~t~gi~hLk~L~eLGVThVeLLPv~df~tvdE~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 355 (898)
T TIGR02103 276 GKYLAFTAADSAGVQHLKKLADAGVTHLHLLPTFDIATVNEEKEKVADIQQPFSKLCELNPDSKSSEFAGYCDSGSQLKQ 355 (898)
T ss_pred ceeeehhccchhhhHHHHHHHhCCCcEEEEcChhhcCccccccccccccccchhhhhccccccccccccccccccccccc
Confidence 999999952 36666688999999999998631
Q ss_pred --------------------CCCCCCccccccCCCCCCCC-------HHHHHHHHHHHHHcCcEEEEeeeccccCCCccc
Q 003474 346 --------------------YASFGYHVTNFFAPSSRCGT-------PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLD 398 (817)
Q Consensus 346 --------------------~~s~GY~v~dy~avd~~~Gt-------~edlk~LV~~aH~~GI~VIlDvV~NH~s~~~~~ 398 (817)
..+|||+|.+||+|+++|++ ..|||+||++||++||+||||+|+||++..+..
T Consensus 356 ~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPegSYatdp~g~~Ri~Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~ 435 (898)
T TIGR02103 356 NDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPEGSYATDPEGPARIKEFREMVQALNKTGLNVVMDVVYNHTNASGPN 435 (898)
T ss_pred cccccchhhhhhhhhhccCCCCCCCCCCcccCCcChhhccCCCCchHHHHHHHHHHHHHHCCCEEEEEeecccccccCcc
Confidence 12799999999999999998 379999999999999999999999999987644
Q ss_pred cCcCCCCCCCCccccC-CCCCc-ccCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCcccccccCccccccCC
Q 003474 399 GLNMFDGTDGHYFHSG-SRGYH-WMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGN 476 (817)
Q Consensus 399 ~l~~fdg~~~~yf~~~-~~g~~-~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~ 476 (817)
....++...+.||+.. ..|.. ...+..+++.+|++|+++|+++++||++||||||||||++.++.
T Consensus 436 ~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl~~W~~ey~VDGFRfDlm~~~~------------- 502 (898)
T TIGR02103 436 DRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSLVVWAKDYKVDGFRFDLMGHHP------------- 502 (898)
T ss_pred CcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEEechhhCC-------------
Confidence 3344666555566532 22321 11223567899999999999999999999999999999998872
Q ss_pred cccccCcccChhHHHHHHHHHHHhhccCCCEEEEEecCCCCCCcc-ccccc--------CCcc-cchhhhHHHHHH-HHH
Q 003474 477 YSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFC-IPVQD--------GGVG-FDYRLQMAIADK-WIE 545 (817)
Q Consensus 477 ~~~~~g~~~~~~a~~fl~~~~~~v~~~~P~~~~IgE~~~~~p~~~-~~~~~--------gglg-FD~~l~~~~~d~-~~~ 545 (817)
.+||+++++.+++++|+++++||.|....... ..... .|+| |+-+++-++... -..
T Consensus 503 -------------~~f~~~~~~~l~~i~pdi~l~GEgW~~~~~~~~~~~~~a~~~n~~~~~ig~FnD~~RDavrGg~~f~ 569 (898)
T TIGR02103 503 -------------KAQMLAAREAIKALTPEIYFYGEGWDFGEVANNRRFINATQLNLAGTGIGTFSDRLRDAVRGGGPFD 569 (898)
T ss_pred -------------HHHHHHHHHHHHHhCCCEEEEecCCCcccccchhhhhhhhccccCCCCeEEeccchhhHhcCCCccc
Confidence 46999999999999999999999996321111 11110 1222 333333322110 000
Q ss_pred H----------Hhhc---ch-----------------hhhhhhhHHhh------------------c-------cCcccc
Q 003474 546 L----------LKKR---DE-----------------DWKMGAIVHTM------------------T-------NRRWLE 570 (817)
Q Consensus 546 ~----------l~~~---~~-----------------~~~~~~l~~~l------------------~-------~~~~~~ 570 (817)
. ..+. .. +.....+...+ . ....+.
T Consensus 570 ~~~~~~~~~Gf~~G~~~~~~~~~~~~~~~~~~~~~~~d~i~~g~~Gnl~~~~~~~~~g~~~~g~~~~y~g~~~~ya~~P~ 649 (898)
T TIGR02103 570 SGDALRQNQGFGSGLAVQPNAHHGLDAASKDGALHLADLTRLGMAGNLKDFVLTDHEGKVVTGEELDYNGAPAGYAADPT 649 (898)
T ss_pred cccccccCcceecCcccCCcccccccchhhhhhhhhHHHHHHhhcCccccccccccccccccccccccCcCccccccCHH
Confidence 0 0000 00 00000011111 0 002355
Q ss_pred cceecccCccccccCccchhhhccChhHHhhhhcCCCCChhhhHHHHHHHHHHHHHHhCCCCceEeecccccCCCCCCCC
Q 003474 571 KCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDF 650 (817)
Q Consensus 571 ~~v~y~esHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~kla~~l~ltlpG~p~l~y~G~E~G~~e~~d~ 650 (817)
.+|||+++||+.++.|+... .+ +.....+...+.++++.+++|+.+|+|+| .+|+||...+-.+
T Consensus 650 e~inYvs~HDN~TL~D~l~~--~~------------~~~~~~~~r~r~~~la~a~~~lsQGipF~-haG~E~lRSK~~~- 713 (898)
T TIGR02103 650 ETINYVSKHDNQTLWDAISY--KA------------AAETPSAERVRMQAVSLSTVMLGQGIPFF-HAGSELLRSKSFD- 713 (898)
T ss_pred HheeeeeccCCccHHHHHHh--hC------------CCCCCHHHHHHHHHHHHHHHHHhChhhHH-hcchHhhcCCCCC-
Confidence 78999999999988775321 01 11111234567788999999999999988 9999999976322
Q ss_pred CCCCCCCCCCCcCCCCCCCCcc--cccccCCCcccc--------------------------------ccchHHHHHHHH
Q 003474 651 PRGDQRLPNGQFVPGNNFSYDK--CRRRFDLGDADY--------------------------------LRYRGMQEFDRA 696 (817)
Q Consensus 651 p~~~~~~~~~~~~~gn~~s~~~--~r~~~~w~~~~~--------------------------------~~~~~l~~f~r~ 696 (817)
.+||+. .-++++|..... .....+.+|++.
T Consensus 714 ----------------~nSY~sgD~~N~vdw~~~~~~~~~glp~~~~n~~~w~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 777 (898)
T TIGR02103 714 ----------------RDSYDSGDWFNRVDFSGQDNNWNVGLPRADKDGSNWPIIAPVLQDAAAKPDATDIKATTAFFLE 777 (898)
T ss_pred ----------------CCCCcCchhhheecccccccccccCCCcccccccchhhhcccccccccccchhhHHHHHHHHHH
Confidence 233332 123455543221 124689999999
Q ss_pred HHHHHHHhCCCCCC-----cEEEeeecC----CCcEEEEEc---------------CcEEEEEEcCCCCcccceEEcccC
Q 003474 697 MQHLEEKYGFMTSE-----HQYVSRKDE----GDRVIVFER---------------GNLVFVFNFHWNSSYSDYRVGCLK 752 (817)
Q Consensus 697 Li~LR~~~~~l~~g-----~~~i~~~~~----~~~Vlaf~R---------------~~llvV~Nf~~~~~~~~~~i~v~~ 752 (817)
||+||+++|+++-+ ...+.+... .++||+|.- +.++||+|-+++ ..++ +....
T Consensus 778 Li~lRks~p~Frl~t~~~I~~~v~F~~~g~~~~~g~i~~~i~d~~~~~~~~~d~~~~~ivVv~Na~~~--~~~~-~~~~~ 854 (898)
T TIGR02103 778 LLRIRSSSPLFRLDTAAEVMKRVDFRNTGPDQIPGLIVMSIDDGGIQAGASLDPRYDGIVVIFNARPE--EVTL-SPDFA 854 (898)
T ss_pred HHHHHhCCcccCCCCHHHHHhheEEeccCCcCCCCEEEEEEcCCccccccccccccCeEEEEEcCCCc--cEEE-ecccC
Confidence 99999999998743 112333332 268999964 238999999852 2333 33222
Q ss_pred CCceEEEEcCCCCCcCCccccCCCcceeccccccCCCCeEEEEEEcCceEEEEEE
Q 003474 753 PGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYAL 807 (817)
Q Consensus 753 ~g~~~~vl~sd~~~~gG~~~~~~~~~~~~~~~~~~~~~~~i~l~lpp~s~~Vl~~ 807 (817)
...|+..-.... ++...+... .+... .-++++||+|+.||..
T Consensus 855 ~~~~~l~~~~~~---~~d~~v~~~--------~~~~~--~~~~~vp~~s~~V~~~ 896 (898)
T TIGR02103 855 GTGLELHAVQQA---SGDESVAKS--------VYSAA--NGTFTVPAWTTAVFVL 896 (898)
T ss_pred CCcEEEEecccc---cCccccccc--------eeecc--CCEEEEcCcEEEEEEe
Confidence 335766422110 111111100 00000 1368999999999975
No 18
>PLN02877 alpha-amylase/limit dextrinase
Probab=100.00 E-value=1.7e-61 Score=573.99 Aligned_cols=494 Identities=17% Similarity=0.222 Sum_probs=330.0
Q ss_pred cCCcEEeCCcEEEEEecCCcCEEEEEeecCCCCC----cccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCC--
Q 003474 175 KFGFIRSDTGITYREWAPGAKSASLIGDFNNWNP----NADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTP-- 248 (817)
Q Consensus 175 ~lG~~~~~~gv~fr~WAP~A~~V~LvgdFN~W~~----~~~pm~r~~~GvWei~lp~~~~g~~~~~~g~~yk~~~~~~-- 248 (817)
+||+++.++|++|++|||+|++|.|+. |++++. ..++|. .+.|||++++++.++ |..|+|+|...
T Consensus 214 ~LGA~~~~~g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~-~~~GVWsv~v~~~~~-------G~~Y~Y~V~v~~p 284 (970)
T PLN02877 214 PLGAHFSKDAVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLK-ESNGVWSVEGPKSWE-------GCYYVYEVSVYHP 284 (970)
T ss_pred CCcceEecCCEEEEEECCCCCEEEEEE-ecCCCCccceEEeccc-CCCCEEEEEeccCCC-------CCeeEEEEeeccc
Confidence 799999999999999999999999997 676642 235787 678999999997765 55789988732
Q ss_pred -CCc---cccCCccceeeccCCCCCCCceEEeCCCc--cccccccC---CCC--CCCCCceEEEeecCCCCCC------C
Q 003474 249 -SGI---KDSIPAWIKFSVQAPGEIPYNGIYYDPPE--EEKYVFQH---PQP--KKPKSLRIYEAHVGMSSTE------P 311 (817)
Q Consensus 249 -~g~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~---~~~--~~~~~~~IYE~hv~~~~~~------~ 311 (817)
.|. ....|||++....+ +. .+++.|+.. ..+..|.. ++| ..+++++|||+|||+||.. .
T Consensus 285 ~~g~~~~~~v~DPYA~als~n-g~---~S~vvDl~~~~~~p~gW~~~~~~~p~~~~~~D~VIYElHVRDFS~~d~sv~~~ 360 (970)
T PLN02877 285 STGKVETCYANDPYARGLSAD-GR---RTLLVDLDSDDLKPEGWDNLAKEKPCLLSFSDISIYELHVRDFSANDETVHPD 360 (970)
T ss_pred CCCcccccccCCccceEEecC-CC---ceEEECCccccCCChhhhhcccccCccCCCcccEEEEEeccccccCCCCCCcC
Confidence 232 24689999886543 22 467777642 24556764 233 2457999999999999863 2
Q ss_pred CCCCHHhhHhh------hhhHHHHcCCCEEEEcCcccCCC-------------------------------------CCC
Q 003474 312 IINTYANFRDD------VLPRIKRLGYNAVQIMAVQEHSY-------------------------------------YAS 348 (817)
Q Consensus 312 ~~G~~~~~~~~------~L~ylk~LGv~~I~LmPi~e~~~-------------------------------------~~s 348 (817)
..|+|.+|++. .|+|||+||||||+|||+++++. ..+
T Consensus 361 ~RGtylgftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~~~~~~s~~~q~~v~~~~~~d~yN 440 (970)
T PLN02877 361 FRGGYLAFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELEKLPPDSEEQQAAITAIQDDDGYN 440 (970)
T ss_pred CCCcchhhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchhccccccchhhhhcccccccCCCCC
Confidence 35999999853 36666677999999999998742 257
Q ss_pred CCCccccccCCCCCCCC-------HHHHHHHHHHHHHcCcEEEEeeeccccCCCcccc-CcCCCCCCCCccc-cCCCCCc
Q 003474 349 FGYHVTNFFAPSSRCGT-------PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDG-LNMFDGTDGHYFH-SGSRGYH 419 (817)
Q Consensus 349 ~GY~v~dy~avd~~~Gt-------~edlk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~-l~~fdg~~~~yf~-~~~~g~~ 419 (817)
|||+|.+||+|+++|+| ..|||+||++||++||+||||||+||++..++++ .+.++...+.||+ .+..|..
T Consensus 441 WGYDP~~YfaPEgSYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~ 520 (970)
T PLN02877 441 WGYNPVLWGVPKGSYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFI 520 (970)
T ss_pred CCCCccccCCCCcccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCCCc
Confidence 99999999999999998 3689999999999999999999999998765433 2456666555554 3333321
Q ss_pred cc-CCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCcccccccCccccccCCcccccCcccChhHHHHHHHHHH
Q 003474 420 WM-WDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVND 498 (817)
Q Consensus 420 ~~-w~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~~ 498 (817)
.. -+....+.++++||++|+++++||++||||||||||++.++.. +.|..+++
T Consensus 521 ~ns~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i~~--------------------------~tm~~~~~ 574 (970)
T PLN02877 521 ENSTCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGHLMK--------------------------RTMVRAKD 574 (970)
T ss_pred ccCCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEccccccH--------------------------HHHHHHHH
Confidence 11 1224457789999999999999999999999999999988732 13444455
Q ss_pred Hhhcc-------C-CCEEEEEecCCCCC--Cccc---cccc----CCcc-cchhhhHHHHH--HH--------HHHHhhc
Q 003474 499 MIHGL-------Y-PEAVSIGEDVSGMP--TFCI---PVQD----GGVG-FDYRLQMAIAD--KW--------IELLKKR 550 (817)
Q Consensus 499 ~v~~~-------~-P~~~~IgE~~~~~p--~~~~---~~~~----gglg-FD~~l~~~~~d--~~--------~~~l~~~ 550 (817)
.++++ . |+++++||.|.... ...+ ..+. .|+| |+-+++-++.. .+ +..+...
T Consensus 575 ~L~~i~~~~~~~dg~~i~lyGEgW~~g~~~~~~~~~~A~q~n~~g~gIg~FnD~~RDavkGg~~F~~~~~qGf~~G~~~~ 654 (970)
T PLN02877 575 ALQSLTLERDGVDGSSIYLYGEGWDFGEVAKNGRGVNASQFNLAGTGIGSFNDRIRDAMLGGSPFGHPLQQGFVTGLFLQ 654 (970)
T ss_pred HHHHHhhhhcccCCCceEEEEeCCCCCCcccccccccccccccCCCceEEecchhHHHHcCCCCCCCcCCCceecccccC
Confidence 55544 3 88999999995321 1111 0000 1222 33333222210 00 0000000
Q ss_pred -------c-----------hhhhhhhhHHhhc--------------------c------CcccccceecccCccccccCc
Q 003474 551 -------D-----------EDWKMGAIVHTMT--------------------N------RRWLEKCVAYAESHDQALVGD 586 (817)
Q Consensus 551 -------~-----------~~~~~~~l~~~l~--------------------~------~~~~~~~v~y~esHD~~r~g~ 586 (817)
. .+.....+...+. + ...+.++|||+++||+.++.|
T Consensus 655 pn~~~~~~~~~~~~~~~~~~d~i~~glaGnl~~~~~~~~~g~~~~g~~~~~y~~~~~~ya~~P~q~InYvs~HDN~TL~D 734 (970)
T PLN02877 655 PNGHDQGGEDVQELMLATAKDHIQVGMAGNLKDYVLTNREGKEVKGSEVLTHDGKPVAYASSPTETINYVSAHDNETLFD 734 (970)
T ss_pred CcccccccchhhhhhhhhhHHHHHHHhccchhccccccccccccccccccccCCcccccccCHHHheeeeeccCCchHHH
Confidence 0 0000000111110 0 123567899999999998877
Q ss_pred cchhhhccChhHHhhhhcCCCCChhhhHHHHHHHHHHHHHHhCCCCceEeecccccCCCCCCCCCCCCCCCCCCCcCCCC
Q 003474 587 KTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGN 666 (817)
Q Consensus 587 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~kla~~l~ltlpG~p~l~y~G~E~G~~e~~d~p~~~~~~~~~~~~~gn 666 (817)
+... .+ +.....+...+.++++.+++++.+|+|+| .+|+||...+- +.
T Consensus 735 ~l~~--~~------------~~~~s~~~r~r~~~la~aiv~lsQGipF~-haG~E~lRSK~-----------------~d 782 (970)
T PLN02877 735 IISL--KT------------PMEISVDERCRINHLATSIIALSQGIPFF-HAGDEILRSKS-----------------LD 782 (970)
T ss_pred HHHh--hc------------CCCCCHHHHHHHHHHHHHHHHHhChhhHH-hcchhhhcCCC-----------------CC
Confidence 5321 01 11112234567889999999999999988 99999999763 33
Q ss_pred CCCCcc--cccccCCCccc---------cccc-----------------------hHHHHHHHHHHHHHHHhCCCCCC--
Q 003474 667 NFSYDK--CRRRFDLGDAD---------YLRY-----------------------RGMQEFDRAMQHLEEKYGFMTSE-- 710 (817)
Q Consensus 667 ~~s~~~--~r~~~~w~~~~---------~~~~-----------------------~~l~~f~r~Li~LR~~~~~l~~g-- 710 (817)
.+||+. .-++++|.... ..++ ..+.+++|.||+||+++|+++-+
T Consensus 783 ~nSYnSgD~~N~lDw~~~~nn~~~GlP~~~~~~~~w~~~~~~l~~~~~~p~~~~i~~~~~~~~~Li~lRks~plFrl~t~ 862 (970)
T PLN02877 783 RDSYNSGDWFNRLDFSYDSNNWGVGLPPKEKNEDNWPLIKPRLADPSFKPSKEHILAALDNFLDLLRIRYSSPLFRLRTA 862 (970)
T ss_pred CCCCcCchhhheeccccccCccccCCChhHhcchhhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHhcCcccCCCCH
Confidence 345543 23456666511 0111 45688999999999999998743
Q ss_pred ---cEEEeeecC----CCcEEEEEc-----------------CcEEEEEEcCC
Q 003474 711 ---HQYVSRKDE----GDRVIVFER-----------------GNLVFVFNFHW 739 (817)
Q Consensus 711 ---~~~i~~~~~----~~~Vlaf~R-----------------~~llvV~Nf~~ 739 (817)
.+.+.+... .++||+|.- +.++||+|-++
T Consensus 863 ~~I~~~v~F~~~g~~~~~gvi~~~i~d~~~~~~~~~~~d~~~~~ivVv~Na~~ 915 (970)
T PLN02877 863 NAIQERVRFHNTGPSSIPGVIVMSIEDGHEGVPGLSQLDPIYSRIVVIFNARP 915 (970)
T ss_pred HHHHhhcEEeccCCCcCCCEEEEEEcCCCCccccccccccccCcEEEEEcCCC
Confidence 112223232 347999964 23899999885
No 19
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=1e-60 Score=593.25 Aligned_cols=477 Identities=18% Similarity=0.280 Sum_probs=332.3
Q ss_pred cccCCcEEeCCcEEEEEecCCcCEEEEEeecCCCCCc---ccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCC
Q 003474 173 YEKFGFIRSDTGITYREWAPGAKSASLIGDFNNWNPN---ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPS 249 (817)
Q Consensus 173 y~~lG~~~~~~gv~fr~WAP~A~~V~LvgdFN~W~~~---~~pm~r~~~GvWei~lp~~~~g~~~~~~g~~yk~~~~~~~ 249 (817)
..+||+++.++||+|++|||+|++|.|+. |++|+.. ..+|.+..+|||+++|++... |..|+|+++.+.
T Consensus 13 ~~plGA~~~~~gv~F~v~ap~A~~V~L~l-f~~~~~~~~~~~~l~~~~g~vW~~~i~~~~~-------g~~Ygyrv~g~~ 84 (1221)
T PRK14510 13 REPLGAVPDGGGVNLALFSGAAERVEFCL-FDLWGVREEARIKLPGRTGDVWHGFIVGVGP-------GARYGNRQEGPG 84 (1221)
T ss_pred CCCCceEEECCeEEEEEECCCCCEEEEEE-EECCCCCeeEEEECCCCcCCEEEEEEccCCC-------CcEEEEEeccCC
Confidence 45899999999999999999999999995 8888643 357877788999999997654 568999998653
Q ss_pred Cc---------cccCCccceeeccCCCC--CCC------------ceEEeCCCc--cccccccCCCC-CC-CCCceEEEe
Q 003474 250 GI---------KDSIPAWIKFSVQAPGE--IPY------------NGIYYDPPE--EEKYVFQHPQP-KK-PKSLRIYEA 302 (817)
Q Consensus 250 g~---------~~~~~~~~~~~~~~~~~--~~~------------~~~~~d~~~--~~~~~~~~~~~-~~-~~~~~IYE~ 302 (817)
+. ...++||++.......- ..| .+.+.+|.. ..+|.|...++ .. ..+.+|||+
T Consensus 85 ~p~~g~rf~p~~~~lDPYA~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~pk~vv~~~~~W~~~~~~~~~~~d~vIYE~ 164 (1221)
T PRK14510 85 GPGEGHRFNPPKLLVDPYARPLDRPFWLHQAIFDDRFFNGDEDLTDSAVLVPKVVVPTPFTWAPRSPLHGDWDDSPLYEM 164 (1221)
T ss_pred CcccccccCCCeEeeCCCCceEeCCcccCcccccccccCCCcccccCcccCccceeecccccCCCCCCCCCcccCeEEEE
Confidence 21 24678998876542110 000 112222210 12577875543 32 367899999
Q ss_pred ecCCCCCC------CCCCCHHhhHh-hhhhHHHHcCCCEEEEcCcccCCC---------CCCCCCccccccCCCCCCC--
Q 003474 303 HVGMSSTE------PIINTYANFRD-DVLPRIKRLGYNAVQIMAVQEHSY---------YASFGYHVTNFFAPSSRCG-- 364 (817)
Q Consensus 303 hv~~~~~~------~~~G~~~~~~~-~~L~ylk~LGv~~I~LmPi~e~~~---------~~s~GY~v~dy~avd~~~G-- 364 (817)
||+.|+.. +..|+|+++.+ ++|||||+||||+||||||++++. .++|||++.|||+|+|+||
T Consensus 165 hvr~ft~~~~~~gg~~~Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~ 244 (1221)
T PRK14510 165 NVRGFTLRHDFFPGNLRGTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPG 244 (1221)
T ss_pred ccchhhccCCCCCcccCcHHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccC
Confidence 99999852 23588888872 478999999999999999999854 2469999999999999999
Q ss_pred CHHHHHHHHHHHHHcCcEEEEeeeccccCCCccccC-cCCCCC-CCCccccCC---CCCcccCCC-CCCCCCCHHHHHHH
Q 003474 365 TPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGL-NMFDGT-DGHYFHSGS---RGYHWMWDS-RLFNYGSWEVLRFL 438 (817)
Q Consensus 365 t~edlk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~l-~~fdg~-~~~yf~~~~---~g~~~~w~~-~~ln~~~peV~~~l 438 (817)
+.+|||+||++||++||+||||+|+||++.++..+. ..+.+. +..||+... ..+...|+. ..+|+++|+|+++|
T Consensus 245 ~~~efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i 324 (1221)
T PRK14510 245 GEEEFAQAIKEAQSAGIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLP 324 (1221)
T ss_pred cHHHHHHHHHHHHHCCCEEEEEEccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHH
Confidence 999999999999999999999999999998754321 112222 234555331 223334443 56899999999999
Q ss_pred HHHHHHHHHhCCccEEEEecCCcccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCEEE-----EEec
Q 003474 439 LSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVS-----IGED 513 (817)
Q Consensus 439 ~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~~~v~~~~P~~~~-----IgE~ 513 (817)
+++++||++ |||||||||++..|... ...||+.++..++++.|+.++ |||.
T Consensus 325 ~d~lr~Wv~-~gVDGfRfDla~~l~r~-----------------------~~~f~~~~~~~l~ai~~d~~l~~~~ligE~ 380 (1221)
T PRK14510 325 MDVLRSWAK-RGVDGFRLDLADELARE-----------------------PDGFIDEFRQFLKAMDQDPVLRRLKMIAEV 380 (1221)
T ss_pred HHHHHHHHH-hCCCEEEEechhhhccC-----------------------ccchHHHHHHHHHHhCCCcCcccCcEEEec
Confidence 999999999 99999999999887211 235899999999999998887 9999
Q ss_pred CCCCCCcccccccCCcccc---hhhhHHHHHHHHHHHhhcchhhhhhhhHHhhc--------cCcccccceecccCcccc
Q 003474 514 VSGMPTFCIPVQDGGVGFD---YRLQMAIADKWIELLKKRDEDWKMGAIVHTMT--------NRRWLEKCVAYAESHDQA 582 (817)
Q Consensus 514 ~~~~p~~~~~~~~gglgFD---~~l~~~~~d~~~~~l~~~~~~~~~~~l~~~l~--------~~~~~~~~v~y~esHD~~ 582 (817)
|...+.. +..+. |+ ..||..+.+.++.++++... ....+...+. ..+.+..+|||++|||+.
T Consensus 381 Wd~~~~~---~~~g~--f~~~~~~~N~~frd~vr~f~~g~~~--~~~~~a~~l~gs~d~~~~~~~~~~~~iNfi~~HD~~ 453 (1221)
T PRK14510 381 WDDGLGG---YQYGK--FPQYWGEWNDPLRDIMRRFWLGDIG--MAGELATRLAGSADIFPHRRRNFSRSINFITAHDGF 453 (1221)
T ss_pred ccCCCCc---cccCC--CCcceeeeccHHHHHHHHHhcCCCc--hHHHHHHHHhCcHhhcCccCCCcccceEEEeeCCch
Confidence 9653321 11121 11 12344445555566654311 0112222221 122345689999999999
Q ss_pred ccCccchhhhc-c---Chh---------HHhh--hhcCCCCChhhhHHHHHHHHHHHHHHhCCCCceEeecccccCCCCC
Q 003474 583 LVGDKTIAFWL-M---DKD---------MYDF--MALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEW 647 (817)
Q Consensus 583 r~g~~t~~~~~-~---~~~---------~~~~--~~~~~~~~~~~~~~~al~kla~~l~ltlpG~p~l~y~G~E~G~~e~ 647 (817)
|+.+.. .+-. . +++ ..++ ..+.+....+.....+++|++.+++|+++|+|+| |||||+|++.
T Consensus 454 rl~dl~-~y~~khN~ange~nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~r~a~~~l~~s~GiP~I-y~GdE~g~tq- 530 (1221)
T PRK14510 454 TLLDLV-SFNHKHNEANGEDNRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRLRLLLLTLMSFPGVPML-YYGDEAGRSQ- 530 (1221)
T ss_pred HHHHHh-hhccccchhccccccCCCCccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCcEE-ecchhccccc-
Confidence 876531 1000 0 000 0000 0011111122334566788999999999999877 9999999875
Q ss_pred CCCCCCCCCCCCCCcCCCCCCCC--cccccccCCCccccccchHHHHHHHHHHHHHHHhCCCCCCc
Q 003474 648 IDFPRGDQRLPNGQFVPGNNFSY--DKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEH 711 (817)
Q Consensus 648 ~d~p~~~~~~~~~~~~~gn~~s~--~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LR~~~~~l~~g~ 711 (817)
.||+++| +.+|+.++|... .++|++|+|+||+|||++|+|+.+.
T Consensus 531 ----------------~Gn~n~y~~~~~r~~~~W~~~----~~~l~~f~k~Li~lRk~~~~L~~g~ 576 (1221)
T PRK14510 531 ----------------NGNNNGYAQDNNRGTYPWGNE----DEELLSFFRRLIKLRREYGVLRQGE 576 (1221)
T ss_pred ----------------CCCCCCCCCCCccccCCcccc----cHHHHHHHHHHHHHHHhChhhccCc
Confidence 2666666 467889999864 3589999999999999999998764
No 20
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=6.7e-58 Score=538.00 Aligned_cols=461 Identities=18% Similarity=0.223 Sum_probs=306.8
Q ss_pred eCCcEEEEEecCC---cCEEEEEeecCCCCCcccccccC----CCceEEEEeCCC-CCCCCCCCCCCEEEEEEeCCCCcc
Q 003474 181 SDTGITYREWAPG---AKSASLIGDFNNWNPNADIMTQN----EFGVWEIFLPNN-ADGSPPIPHGSRVKIHMDTPSGIK 252 (817)
Q Consensus 181 ~~~gv~fr~WAP~---A~~V~LvgdFN~W~~~~~pm~r~----~~GvWei~lp~~-~~g~~~~~~g~~yk~~~~~~~g~~ 252 (817)
..+-+++|+..+. .++|.|.....+. ....+|++. ....|+++||.. ..+ -..|.|.+...++..
T Consensus 17 ~~~~~~~~lr~~~~~~~~~v~l~~~~~~~-~~~~~m~~~~~~~~~~~~~~~~~~~~~~~------~~~Y~F~l~~~~~~~ 89 (598)
T PRK10785 17 SKDQLLITLWLTGEDPPQRVMLRCEPDNE-EYLLPMEKQRSQPQVTAWRASLPLNSGQP------RRRYSFKLLWHDRQR 89 (598)
T ss_pred CCCEEEEEEEEcCCCceEEEEEEEEcCCC-EEEEEeEEeecCCCceEEEEEEEcCCCCc------eEEEEEEEEeCCEEE
Confidence 4456888888663 5688887644332 234678763 235699999843 121 246888886543211
Q ss_pred ccCCccceeeccCCCCCCCceEEeCCCcccccccc--CCCCCCCCCceEEEeecCCCCCCCC------------------
Q 003474 253 DSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQ--HPQPKKPKSLRIYEAHVGMSSTEPI------------------ 312 (817)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~~~~~IYE~hv~~~~~~~~------------------ 312 (817)
| ....+.. . ..|+....|.+. ...|.+-++.|||||++..|...+.
T Consensus 90 -----~----~~~~g~~----~-~~~~~~~~f~~~~~~~~P~W~~~~v~YqIfpDRF~ng~~~n~~~~~~~~~~~~~~~~ 155 (598)
T PRK10785 90 -----W----FTPQGFS----R-RPPARLEQFAVDVPDQGPQWVADQVFYQIFPDRFARSLPREAVQDHVYYHHAAGQEI 155 (598)
T ss_pred -----E----EcCCcee----e-ccCCCccceEeeCCCCCCchhhcCEEEEechhhhcCCCcccCccCCceeeccCCCcc
Confidence 1 0000100 0 001000112221 1234444789999999988742110
Q ss_pred -------------------CCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHH
Q 003474 313 -------------------INTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLI 373 (817)
Q Consensus 313 -------------------~G~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV 373 (817)
-|||+||+ ++|||||+||||+|||+||++++. +|||+++||++|||+|||.++||+||
T Consensus 156 ~~~~w~~~~~~~~~~~~f~GGDl~GI~-~kLdYL~~LGv~~I~L~Pif~s~s--~hgYd~~Dy~~iDp~~Gt~~df~~Lv 232 (598)
T PRK10785 156 ILRDWDEPVTAQAGGSTFYGGDLDGIS-EKLPYLKKLGVTALYLNPIFTAPS--VHKYDTEDYRHVDPQLGGDAALLRLR 232 (598)
T ss_pred cccCcCCCcccccccccccCcCHHHHH-HHHHHHHHcCCCEEEeCCcccCCC--CCCcCcccccccCcccCCHHHHHHHH
Confidence 28999999 699999999999999999999875 79999999999999999999999999
Q ss_pred HHHHHcCcEEEEeeeccccCCCccccCcC-------CCCCC---CCccccCCCCCcccC----CCCCCCCCCHHHHHHHH
Q 003474 374 DKAHELGLLVLMDIVHSHASNNVLDGLNM-------FDGTD---GHYFHSGSRGYHWMW----DSRLFNYGSWEVLRFLL 439 (817)
Q Consensus 374 ~~aH~~GI~VIlDvV~NH~s~~~~~~l~~-------fdg~~---~~yf~~~~~g~~~~w----~~~~ln~~~peV~~~l~ 439 (817)
++||++||+||||+|+||++.+|++.... +.... ..||.....+....| +.|+||++||+|+++|+
T Consensus 233 ~~aH~rGikVilD~V~NH~~~~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~ 312 (598)
T PRK10785 233 HATQQRGMRLVLDGVFNHTGDSHPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLDFQSEEVVNEIY 312 (598)
T ss_pred HHHHHCCCEEEEEECCCcCCCCCHHHHHhhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCccccCCCHHHHHHHH
Confidence 99999999999999999999988532111 11111 124433333322233 35899999999999999
Q ss_pred H----HHHHHHHh-CCccEEEEecCCcccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCEEEEEecC
Q 003474 440 S----NARWWLEE-YKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDV 514 (817)
Q Consensus 440 ~----~l~~Wl~e-~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~~~v~~~~P~~~~IgE~~ 514 (817)
+ ++++|+++ |||||||+|+|..+... + .....++||+++++.+++.+|++++|||.|
T Consensus 313 ~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~----------------~--~~~~~~~f~~~~~~~vk~~~pd~~ligE~~ 374 (598)
T PRK10785 313 RGEDSIVRHWLKAPYNIDGWRLDVVHMLGEG----------------G--GARNNLQHVAGITQAAKEENPEAYVLGEHF 374 (598)
T ss_pred hhhhHHHHHhhcCCCCCcEEEEecHhHhccc----------------c--CccccHHHHHHHHHHHHhhCCCeEEEEecc
Confidence 5 89999997 99999999999766311 0 011245799999999999999999999998
Q ss_pred CCCCCcccccccCCcccchhhhH-HHHHHHHHHHhhcchh-----hhhhhhHHhh----ccCcccc--cceecccCcccc
Q 003474 515 SGMPTFCIPVQDGGVGFDYRLQM-AIADKWIELLKKRDED-----WKMGAIVHTM----TNRRWLE--KCVAYAESHDQA 582 (817)
Q Consensus 515 ~~~p~~~~~~~~gglgFD~~l~~-~~~d~~~~~l~~~~~~-----~~~~~l~~~l----~~~~~~~--~~v~y~esHD~~ 582 (817)
..... +..+. ++|..+++ .+...+..++...... .....+...+ ...++.. ..+||++|||+.
T Consensus 375 ~~~~~----~l~~~-~~d~~mny~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~l~nHD~~ 449 (598)
T PRK10785 375 GDARQ----WLQAD-VEDAAMNYRGFAFPLRAFLANTDIAYHPQQIDAQTCAAWMDEYRAGLPHQQQLRQFNQLDSHDTA 449 (598)
T ss_pred CChhh----hccCc-cccccccchhhhhHHHHHhhccccccCccCCCHHHHHHHHHHHHHhCCHHHHHHhhhccCCCccc
Confidence 64221 11111 12211111 1212222333211100 0111111111 1112211 246899999999
Q ss_pred ccCccchhhhccChhHHhhhhcCCCCChhhhHHHHHHHHHHHHHHhCCCCceEeecccccCCCCCCCCCCCCCCCCCCCc
Q 003474 583 LVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQF 662 (817)
Q Consensus 583 r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~kla~~l~ltlpG~p~l~y~G~E~G~~e~~d~p~~~~~~~~~~~ 662 (817)
|+... ++. ..+++|+|.+++||+||+|+| |||+|+|+.+..| |
T Consensus 450 R~~~~------~~~------------------~~~~~kla~~ll~t~pGiP~I-YYGdE~G~~g~~d-p----------- 492 (598)
T PRK10785 450 RFKTL------LGG------------------DKARMPLALVWLFTWPGVPCI-YYGDEVGLDGGND-P----------- 492 (598)
T ss_pred hhhhh------hCC------------------CHHHHHHHHHHHHhCCCCcEE-EeeeeccccCCCC-C-----------
Confidence 87532 111 135789999999999999988 9999999975322 1
Q ss_pred CCCCCCCCcccccccCCCccccccchHHHHHHHHHHHHHHHhCCCCCCcEEEeeecCCCcEEEEEc----CcEEEEEEcC
Q 003474 663 VPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFER----GNLVFVFNFH 738 (817)
Q Consensus 663 ~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LR~~~~~l~~g~~~i~~~~~~~~Vlaf~R----~~llvV~Nf~ 738 (817)
.+|++|+|.... ..++|++|+|+|++||+++++|+.|...... .+++|++|.| +.++||+|++
T Consensus 493 ---------~~R~~m~W~~~~--~~~~l~~~~r~Li~lRk~~~aL~~G~~~~l~--~~~~v~af~R~~~~~~vlVviN~s 559 (598)
T PRK10785 493 ---------FCRKPFPWDEAK--QDGALLALYQRMIALRKKSQALRRGGCQVLY--AEGNVVVFARVLQQQRVLVAINRG 559 (598)
T ss_pred ---------CccCCcCCCccc--CchHHHHHHHHHHHHHhhCcccccCcEEEEE--eCCCEEEEEEECCCCEEEEEEECC
Confidence 368899998654 4579999999999999999999988644432 2457999999 5799999998
No 21
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=2e-57 Score=529.72 Aligned_cols=445 Identities=20% Similarity=0.285 Sum_probs=286.9
Q ss_pred CCceEEEeecCCCCCC--CCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHH
Q 003474 295 KSLRIYEAHVGMSSTE--PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSL 372 (817)
Q Consensus 295 ~~~~IYE~hv~~~~~~--~~~G~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~L 372 (817)
+.++|||++|++|.+. ++.|+|+|++ ++||||++||||+||||||++++. .+|||+++||++|+|+|||.++||+|
T Consensus 4 ~~~viYqi~~~~f~d~~~~~~Gdl~gi~-~~Ldyl~~LGv~~i~L~Pi~~~~~-~~~gY~~~dy~~vd~~~Gt~~df~~L 81 (539)
T TIGR02456 4 KDAVFYEVHVRSFFDSNGDGIGDFPGLT-SKLDYLKWLGVDALWLLPFFQSPL-RDDGYDVSDYRAILPEFGTIDDFKDF 81 (539)
T ss_pred ccceEEEEehhHhhcCCCCCccCHHHHH-HhHHHHHHCCCCEEEECCCcCCCC-CCCCCCcccccccChhhCCHHHHHHH
Confidence 6799999999999754 4589999999 699999999999999999999875 36999999999999999999999999
Q ss_pred HHHHHHcCcEEEEeeeccccCCCccccCc---CCCCCCCCccccC---------------CCCCcccC------------
Q 003474 373 IDKAHELGLLVLMDIVHSHASNNVLDGLN---MFDGTDGHYFHSG---------------SRGYHWMW------------ 422 (817)
Q Consensus 373 V~~aH~~GI~VIlDvV~NH~s~~~~~~l~---~fdg~~~~yf~~~---------------~~g~~~~w------------ 422 (817)
|++||++||+||||+|+||++.+|++... ..+.....||... ..+..|.|
T Consensus 82 v~~ah~~Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f 161 (539)
T TIGR02456 82 VDEAHARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTFDPVAKQYYWHRF 161 (539)
T ss_pred HHHHHHCCCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCccccCCcCeeEEecc
Confidence 99999999999999999999998743211 1111111222210 00111221
Q ss_pred --CCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCcccccccCccccccCCcccccCcccCh-hHHHHHHHHHHH
Q 003474 423 --DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDV-DAVVYLMLVNDM 499 (817)
Q Consensus 423 --~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~-~a~~fl~~~~~~ 499 (817)
+.++||+.||+||++|++++++|++ +||||||||++++|.... | +.+.+. +..+||+++++.
T Consensus 162 ~~~~pdln~~np~vr~~l~~~~~~w~~-~GvDGfRlDav~~~~~~~-~-------------~~~~~~p~~~~f~~~~~~~ 226 (539)
T TIGR02456 162 FSHQPDLNYDNPAVHDAVHDVMRFWLD-LGVDGFRLDAVPYLYERE-G-------------TSCENLPETHEFLKRLRKM 226 (539)
T ss_pred cCCCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEecHHhhhccC-C-------------CccCCCchHHHHHHHHHHH
Confidence 2479999999999999999999998 899999999999885321 1 112232 357899999999
Q ss_pred hhccCCCEEEEEecCCCCCCcccccc-c-C----CcccchhhhHHHHHHHHHHHhhcchhhhhhhhHHhh---ccCcccc
Q 003474 500 IHGLYPEAVSIGEDVSGMPTFCIPVQ-D-G----GVGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTM---TNRRWLE 570 (817)
Q Consensus 500 v~~~~P~~~~IgE~~~~~p~~~~~~~-~-g----glgFD~~l~~~~~d~~~~~l~~~~~~~~~~~l~~~l---~~~~~~~ 570 (817)
+++.+|++++|||.+. ++..+..+. . . .+.|+|.+...+ ...+... .+..+...+ ....-..
T Consensus 227 v~~~~p~~~~iaE~~~-~~~~~~~y~~~~~~~~~d~~f~f~l~~~~----~~~l~~~----~~~~l~~~l~~~~~~~~~~ 297 (539)
T TIGR02456 227 VDREYPGRMLLAEANQ-WPEEVVAYFGDEGDPECHMAFNFPVMPRI----FMALRRE----DRSPIIDILKETPDIPDSC 297 (539)
T ss_pred HHHhCCCeEEEEEeCC-CHHHHHHhhCCCCCCeeeeEEChhhhhhh----hcccccC----CHHHHHHHHHHhhhccCCC
Confidence 9999999999999853 332222221 1 1 124555543222 1111111 011111111 1111112
Q ss_pred cceecccCccccccCccch-------hhhccChhHHhhhhc-CCCCChhhhHHHHHHHHHHHHHHhCCCCceEeeccccc
Q 003474 571 KCVAYAESHDQALVGDKTI-------AFWLMDKDMYDFMAL-DRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEF 642 (817)
Q Consensus 571 ~~v~y~esHD~~r~g~~t~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~~al~kla~~l~ltlpG~p~l~y~G~E~ 642 (817)
..++|++|||+.++..-+- +.+..+......... .+.. .......+++|+|++++||+||+|+| |||+|+
T Consensus 298 ~~~~fl~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~-s~~~~~~~~~kla~~~l~tlpG~P~I-YYG~Ei 375 (539)
T TIGR02456 298 QWCIFLRNHDELTLEMVTDEERDFMYAAYAPDPRMRINLGIRRRLA-PLLDNDRRRIELLTALLLSLPGSPIL-YYGDEI 375 (539)
T ss_pred ceeeecCCCCccCccccChhhhhhhhhhccCCcchhcccchhhhhh-hcccccHHHHHHHHHHHHhCCCceEE-Eechhh
Confidence 3457999999976421000 000000000000000 0000 00111245789999999999999877 999999
Q ss_pred CCCCCCCCCCCCCCCCCCCcCCCCCCCCcccccccCCCccc--------------------------------cccchHH
Q 003474 643 GHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDAD--------------------------------YLRYRGM 690 (817)
Q Consensus 643 G~~e~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~--------------------------------~~~~~~l 690 (817)
||.+-.. ..+.+.+|.+|+|.... .....++
T Consensus 376 Gm~~~~~-----------------~~~~~~~R~pm~W~~~~~~gfs~~~~~~~~~p~~~~~~~~~~~~nv~~q~~~~~sl 438 (539)
T TIGR02456 376 GMGDNIW-----------------LGDRNGVRTPMQWSPDRNAGFSSADPGQLFLPPVQDPVYGYQQVNVEAQLRDPSSL 438 (539)
T ss_pred cCcCCCc-----------------cCCCcCccCCcCcCCCCCCCCCCCCCcccccccccccccccchhhHHHHhhCcccH
Confidence 9964110 01122345556554321 1234679
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeeecCCCcEEEEEc----CcEEEEEEcCCCCcccceEEcccC-CC-ceEEEEcCCC
Q 003474 691 QEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFER----GNLVFVFNFHWNSSYSDYRVGCLK-PG-KYKIVLDSDD 764 (817)
Q Consensus 691 ~~f~r~Li~LR~~~~~l~~g~~~i~~~~~~~~Vlaf~R----~~llvV~Nf~~~~~~~~~~i~v~~-~g-~~~~vl~sd~ 764 (817)
++|+|+||+||+++++|..|...... ..+++|++|.| +.++||+|++. + .....|.++. .| .+.+++.++.
T Consensus 439 l~~yr~Li~lRk~~~aL~~G~~~~l~-~~~~~v~~f~R~~~~~~vlVv~N~s~-~-~~~v~l~~~~~~~~~~~dl~~~~~ 515 (539)
T TIGR02456 439 LHWTRRVLHVRKAHPAFGRGSLTFLP-TGNRRVLAFLREYEGERVLCVFNFSR-N-PQAVELDLSEFAGRVPVELIGGAP 515 (539)
T ss_pred HHHHHHHHHHHhcCcccccCceEEEe-cCCCCEEEEEEEcCCcEEEEEEeCCC-C-CEEeeccccccccCcceecccCCc
Confidence 99999999999999999988643322 23457999999 57999999994 2 2345554332 12 3555543221
Q ss_pred CCcCCccccCCCcceeccccccCCCCeEEEEEEcCceEEEEEE
Q 003474 765 PLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYAL 807 (817)
Q Consensus 765 ~~~gG~~~~~~~~~~~~~~~~~~~~~~~i~l~lpp~s~~Vl~~ 807 (817)
. .. ...+.+.|+|||.++++|++
T Consensus 516 ~--------------~~------~~~~~~~~~l~p~~~~~~~~ 538 (539)
T TIGR02456 516 F--------------PP------VGGDGYLLTLGPHGFYWFRL 538 (539)
T ss_pred c--------------cc------ccCCcceEEECCceEEEEEe
Confidence 0 00 00122789999999999984
No 22
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=1.2e-55 Score=513.51 Aligned_cols=451 Identities=17% Similarity=0.244 Sum_probs=295.4
Q ss_pred CCCCceEEEeecCCCCCC--CCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHH
Q 003474 293 KPKSLRIYEAHVGMSSTE--PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLK 370 (817)
Q Consensus 293 ~~~~~~IYE~hv~~~~~~--~~~G~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk 370 (817)
+.+..+|||+++++|... ++.|+|+|++ ++||||++||||+||||||++++. ..|||++.||++|+|+|||.+|||
T Consensus 7 W~~~~v~Yqi~~~~f~d~~~~~~Gdl~gi~-~~ldyl~~lGv~~i~l~P~~~~~~-~~~gY~~~d~~~id~~~Gt~~d~~ 84 (551)
T PRK10933 7 WWQNGVIYQIYPKSFQDTTGSGTGDLRGVT-QRLDYLQKLGVDAIWLTPFYVSPQ-VDNGYDVANYTAIDPTYGTLDDFD 84 (551)
T ss_pred hhhcCeEEEEEchHhhcCCCCCCcCHHHHH-HhhHHHHhCCCCEEEECCCCCCCC-CCCCCCcccCCCcCcccCCHHHHH
Confidence 346899999999999753 4689999999 699999999999999999998875 358999999999999999999999
Q ss_pred HHHHHHHHcCcEEEEeeeccccCCCccccCcCCCCCCC--Ccc--cc------------CCCCCcccC------------
Q 003474 371 SLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDG--HYF--HS------------GSRGYHWMW------------ 422 (817)
Q Consensus 371 ~LV~~aH~~GI~VIlDvV~NH~s~~~~~~l~~fdg~~~--~yf--~~------------~~~g~~~~w------------ 422 (817)
+||++||++||+||||+|+||++.+|++.....+...+ .|| .. ...+..|.|
T Consensus 85 ~lv~~~h~~gi~vilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f 164 (551)
T PRK10933 85 ELVAQAKSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYYLHLF 164 (551)
T ss_pred HHHHHHHHCCCEEEEEECCCCccCchhHHHhhcCCCCCCcCceEecCCCCCCCCCcccccCCCccccccCCCCceEeecc
Confidence 99999999999999999999999988543221111110 121 11 001122223
Q ss_pred --CCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCcccccccCccccccCCcccccCcccChhHHHHHHHHHHHh
Q 003474 423 --DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMI 500 (817)
Q Consensus 423 --~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~~~v 500 (817)
+.++||+.||+|+++|+++++||++ +||||||||+|++|... .+++.........++. ...+..+||+++++.+
T Consensus 165 ~~~~pdLn~~np~V~~~l~~~~~~W~~-~GvDGfRlDa~~~i~~~-~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 240 (551)
T PRK10933 165 APEQADLNWENPAVRAELKKVCEFWAD-RGVDGLRLDVVNLISKD-QDFPDDLDGDGRRFYT--DGPRAHEFLQEMNRDV 240 (551)
T ss_pred cccCCccCCCCHHHHHHHHHHHHHHHH-CCCcEEEEcchhhcCcC-CCCCCCcccccccccC--CChHHHHHHHHHHHHh
Confidence 2579999999999999999999997 99999999999998643 1221111111111111 1235678999998776
Q ss_pred hccCCCEEEEEecCCCCCCccccccc--C---CcccchhhhHHHHHHHHHHHhhc---chhhhhhhhHHh-------hcc
Q 003474 501 HGLYPEAVSIGEDVSGMPTFCIPVQD--G---GVGFDYRLQMAIADKWIELLKKR---DEDWKMGAIVHT-------MTN 565 (817)
Q Consensus 501 ~~~~P~~~~IgE~~~~~p~~~~~~~~--g---glgFD~~l~~~~~d~~~~~l~~~---~~~~~~~~l~~~-------l~~ 565 (817)
.. .+++++|||.|...+..+..+.. + .+.|+|.. . ...++... ...+....+... +..
T Consensus 241 ~~-~~~~~~vgE~~~~~~~~~~~y~~~~~~~~~~~fnf~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (551)
T PRK10933 241 FT-PRGLMTVGEMSSTSLEHCQRYAALTGSELSMTFNFHH--L----KVDYPNGEKWTLAKPDFVALKTLFRHWQQGMHN 313 (551)
T ss_pred hc-ccCcEEEEeecCCCHHHHHHhhcccCCeeeeEecHHH--h----hhhhccCCcccccccCHHHHHHHHHHHHHhhcc
Confidence 43 34789999998654444333321 1 13444431 1 11111110 011111111111 111
Q ss_pred CcccccceecccCccccccCccchhhhccChhHHhhhhcCCCCChhhhHHHHHHHHHHHHHHhCCCCceEeecccccCCC
Q 003474 566 RRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHP 645 (817)
Q Consensus 566 ~~~~~~~v~y~esHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~kla~~l~ltlpG~p~l~y~G~E~G~~ 645 (817)
..| ...|++|||++|+..+. ..+. ....+.+|++.+++||+||+|+| |||+|+||.
T Consensus 314 ~~~---~~~fl~NHD~~R~~sr~----g~~~----------------~~~~~~aklla~ll~tlpG~P~I-YyGeEiGm~ 369 (551)
T PRK10933 314 VAW---NALFWCNHDQPRIVSRF----GDEG----------------EYRVPAAKMLAMVLHGMQGTPYI-YQGEEIGMT 369 (551)
T ss_pred cCe---eccccCCCCcccHHHHc----CCch----------------hHHHHHHHHHHHHHHhCCCceEE-EeecccCCC
Confidence 222 24689999999875321 1010 11234578889999999999988 999999997
Q ss_pred CCCCCCCCCC-CCC-----------CC-----CcCCCCCCCCcccccccCCCcccc------------------------
Q 003474 646 EWIDFPRGDQ-RLP-----------NG-----QFVPGNNFSYDKCRRRFDLGDADY------------------------ 684 (817)
Q Consensus 646 e~~d~p~~~~-~~~-----------~~-----~~~~gn~~s~~~~r~~~~w~~~~~------------------------ 684 (817)
+. .+++.++ ... .+ ....-+..+++.||.+|+|.....
T Consensus 370 ~~-~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~Rd~~RtPMqW~~~~~~GFs~~~pwl~~~~~~~~inv~~Q 448 (551)
T PRK10933 370 NP-HFTRITDYRDVESLNMFAELRNDGRDADELLAILASKSRDNSRTPMQWDNGDNAGFTQGEPWIGLCDNYQEINVEAA 448 (551)
T ss_pred CC-CCCCHHHhcCHHHHHHHHHHhhcCCCHHHHHhhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCcccccccHHHH
Confidence 62 1111000 000 00 000122347888999999987542
Q ss_pred -ccchHHHHHHHHHHHHHHHhCCCCCCcEEEeeecCCCcEEEEEc----CcEEEEEEcCCCCcccceEEcccCCCceEEE
Q 003474 685 -LRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFER----GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIV 759 (817)
Q Consensus 685 -~~~~~l~~f~r~Li~LR~~~~~l~~g~~~i~~~~~~~~Vlaf~R----~~llvV~Nf~~~~~~~~~~i~v~~~g~~~~v 759 (817)
....++++|||+||+||+++|+|..|.... ....+++|++|.| +.++||+|++. . ...+.+. ...+.|+.+
T Consensus 449 ~~~~~Sll~~yk~Li~lRk~~~aL~~G~~~~-~~~~~~~v~af~R~~~~~~~lvv~N~s~-~-~~~~~~~-~~~~~~~~~ 524 (551)
T PRK10933 449 LADEDSVFYTYQKLIALRKQEPVLTWGDYQD-LLPNHPSLWCYRREWQGQTLLVIANLSR-E-PQPWQPG-QMRGNWQLL 524 (551)
T ss_pred hcCcccHHHHHHHHHHHhhcChhhccceeEE-eccCCCcEEEEEEEcCCcEEEEEEECCC-C-CeeeecC-cccCCceEE
Confidence 123579999999999999999999885433 2233457999999 57999999993 2 2334443 234678888
Q ss_pred EcCCCCCcCCccccCCCcceeccccccCCCCeEEEEEEcCceEEEEEE
Q 003474 760 LDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYAL 807 (817)
Q Consensus 760 l~sd~~~~gG~~~~~~~~~~~~~~~~~~~~~~~i~l~lpp~s~~Vl~~ 807 (817)
|++..... .. ...++|||.+++|++.
T Consensus 525 l~~~~~~~--------------------~~--~~~~~L~p~~~~~~~~ 550 (551)
T PRK10933 525 MHNYEEAS--------------------PQ--PCAMTLRPFEAVWWLQ 550 (551)
T ss_pred eecCcccc--------------------CC--CCcEEECCCeEEEEEe
Confidence 76421100 00 0348899999999874
No 23
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=2.3e-55 Score=511.67 Aligned_cols=455 Identities=16% Similarity=0.195 Sum_probs=292.1
Q ss_pred CCceEEEeecCCCCCC--CCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHH
Q 003474 295 KSLRIYEAHVGMSSTE--PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSL 372 (817)
Q Consensus 295 ~~~~IYE~hv~~~~~~--~~~G~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~L 372 (817)
+..+|||+|+++|+.. ++.|+|+|++ ++||||++||||+|||+||++++. ..+||+++||++|+|+|||.++|++|
T Consensus 3 ~~~v~Y~i~~~~f~~~~~~~~G~~~gi~-~~l~yl~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~id~~~Gt~~~~~~l 80 (543)
T TIGR02403 3 QKKVIYQIYPKSFYDSTGDGTGDLRGII-EKLDYLKKLGVDYIWLNPFYVSPQ-KDNGYDVSDYYAINPLFGTMADFEEL 80 (543)
T ss_pred ccCEEEEEEhHHHhcCCCCCccCHHHHH-HhHHHHHHcCCCEEEECCcccCCC-CCCCCCccccCccCcccCCHHHHHHH
Confidence 5789999999999753 4679999999 699999999999999999999875 34799999999999999999999999
Q ss_pred HHHHHHcCcEEEEeeeccccCCCccccCcCC--CCCCCCccc-cCC------------CCCcccC--------------C
Q 003474 373 IDKAHELGLLVLMDIVHSHASNNVLDGLNMF--DGTDGHYFH-SGS------------RGYHWMW--------------D 423 (817)
Q Consensus 373 V~~aH~~GI~VIlDvV~NH~s~~~~~~l~~f--dg~~~~yf~-~~~------------~g~~~~w--------------~ 423 (817)
|++||++||+||||+|+||++.+|.+....- ++....||. .+. .+..|.| +
T Consensus 81 v~~ah~~gi~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~ 160 (543)
T TIGR02403 81 VSEAKKRNIKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFGGSAWEYFGDTGQYYLHLFDKT 160 (543)
T ss_pred HHHHHHCCCEEEEEECccccccchHHHHHhhcCCCcccCceEecCCCCCCCCcccccCCCcCccccCCCCceEEeccCCc
Confidence 9999999999999999999999885322111 111112221 100 0111221 2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCcccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhcc
Q 003474 424 SRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGL 503 (817)
Q Consensus 424 ~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~~~v~~~ 503 (817)
.++||++||+|+++|+++++||++ +||||||||+|++|.+........ ...-..++ .......+||+++++.+++
T Consensus 161 ~pdln~~np~v~~~i~~~~~~W~~-~giDGfRlDa~~~i~~~~~~~~~~-~~~~~~~~--~~~~~~~~f~~~~~~~~~~- 235 (543)
T TIGR02403 161 QADLNWENPEVREELKDVVNFWRD-KGVDGFRLDVINLISKDQFFEDDE-IGDGRRFY--TDGPRVHEYLQEMNQEVFG- 235 (543)
T ss_pred CCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEeeehhhccCcccCCCC-CCCCcccc--CCChHHHHHHHHHHHHhhc-
Confidence 489999999999999999999998 799999999999985331100000 00000011 1124567899999999988
Q ss_pred CCCEEEEEecCCCCCCccccccc-CCcccchhhhHHHHHHHHHHHhhc---chhhhhhhhHHhh---c-cCc-cccccee
Q 003474 504 YPEAVSIGEDVSGMPTFCIPVQD-GGVGFDYRLQMAIADKWIELLKKR---DEDWKMGAIVHTM---T-NRR-WLEKCVA 574 (817)
Q Consensus 504 ~P~~~~IgE~~~~~p~~~~~~~~-gglgFD~~l~~~~~d~~~~~l~~~---~~~~~~~~l~~~l---~-~~~-~~~~~v~ 574 (817)
.|++++|||.|...+..+..+.. .+-.||..+++.. ....+.... ...+....+...+ . ... .....++
T Consensus 236 ~~~~~lvgE~~~~~~~~~~~y~~~~~~~~d~~~nf~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 313 (543)
T TIGR02403 236 DNDSVTVGEMSSTTIENCIRYSNPENKELSMVFTFHH--LKVDYPNGEKWTLAKFDFAKLKEIFSTWQTGMQAGGGWNAL 313 (543)
T ss_pred cCCeEEEEEeCCCCHHHHHhhhCCCCCeeCeEEChhh--hhchhccccccccCCCCHHHHHHHHHHHHHhccccCcceee
Confidence 89999999998765544333322 1112332222211 011111110 0011111111111 0 000 1122357
Q ss_pred cccCccccccCccchhhhccChhHHhhhhcCCCCChhhhHHHHHHHHHHHHHHhCCCCceEeecccccCCCCCC--CCCC
Q 003474 575 YAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWI--DFPR 652 (817)
Q Consensus 575 y~esHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~kla~~l~ltlpG~p~l~y~G~E~G~~e~~--d~p~ 652 (817)
|++|||++|+..+. .. + . ....+.+|++++++||+||+|+| |||+|+||.+.. .++.
T Consensus 314 fl~NHD~~R~~s~~------g~--------~-~-----~~~~~~~k~~a~ll~tlpG~P~I-YYGdEiGm~~~~~~~~~~ 372 (543)
T TIGR02403 314 FWNNHDQPRAVSRF------GD--------D-G-----EYRVESAKMLAAAIHLLRGTPYI-YQGEEIGMTNPKFTNIED 372 (543)
T ss_pred ecCCCChhhHHHhc------CC--------c-h-----hhHHHHHHHHHHHHHHCCCCeEE-EeccccCCCCCCCCCHHH
Confidence 99999999875321 10 0 0 00123568888889999999988 999999997531 1100
Q ss_pred CCC-----C----CCCCCc-----CCCCCCCCcccccccCCCcccc-------------------------ccchHHHHH
Q 003474 653 GDQ-----R----LPNGQF-----VPGNNFSYDKCRRRFDLGDADY-------------------------LRYRGMQEF 693 (817)
Q Consensus 653 ~~~-----~----~~~~~~-----~~gn~~s~~~~r~~~~w~~~~~-------------------------~~~~~l~~f 693 (817)
... . .+.+.. ..-+..+++.+|.+|+|..... ....++++|
T Consensus 373 ~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~rd~~RtPm~W~~~~~aGFs~~~pwl~~~~~~~~~nv~~q~~~~~Sll~~ 452 (543)
T TIGR02403 373 YRDVESLNAYDILLKKGKSEEEALAILKQKSRDNSRTPMQWNNEKNAGFTTGKPWLGVATNYKEINVEKALADDNSIFYF 452 (543)
T ss_pred hcCHHHHHHHHHHhhcCCCHHHHHHhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCCCccccCHHHHhhCCccHHHH
Confidence 000 0 000000 0112346778999999986421 124689999
Q ss_pred HHHHHHHHHHhCCCCCCcEEEeeecCCCcEEEEEc----CcEEEEEEcCCCCcccceEEcccCCCceEEEEcCCCCCcCC
Q 003474 694 DRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFER----GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGG 769 (817)
Q Consensus 694 ~r~Li~LR~~~~~l~~g~~~i~~~~~~~~Vlaf~R----~~llvV~Nf~~~~~~~~~~i~v~~~g~~~~vl~sd~~~~gG 769 (817)
||+||+||+++|+|..|...... ..+++|++|.| +.++||+|++. + ...+.|+.. .+.++.++++....
T Consensus 453 yr~Li~lRk~~~aL~~G~~~~~~-~~~~~v~a~~R~~~~~~~lVv~N~s~-~-~~~~~l~~~-~~~~~~~~~~~~~~--- 525 (543)
T TIGR02403 453 YQKLIALRKSEPVITDGDYQFLL-PDDPSVWAYTRTYKNQKLLVINNFYG-E-EKTIELPLD-LLSGKILLSNYEEA--- 525 (543)
T ss_pred HHHHHHHHhhcccccCccEEEee-cCCCcEEEEEEEcCCcEEEEEEECCC-C-CeEeeCCcc-CcCceEEEecCCCc---
Confidence 99999999999999988543322 23347999999 57999999994 2 334444321 23455566542210
Q ss_pred ccccCCCcceeccccccCCCCeEEEEEEcCceEEEEE
Q 003474 770 YKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYA 806 (817)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~i~l~lpp~s~~Vl~ 806 (817)
. . ...+.|||++++|+.
T Consensus 526 ~----------------~----~~~~~L~p~~~~i~~ 542 (543)
T TIGR02403 526 E----------------K----DAKLELKPYEAIVLL 542 (543)
T ss_pred C----------------C----CCcEEECCceEEEEe
Confidence 0 0 044899999999985
No 24
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.4e-53 Score=491.35 Aligned_cols=551 Identities=20% Similarity=0.299 Sum_probs=352.4
Q ss_pred cccCCcEE---eCCcEEEEEecCCcCEEEEEe-ecCCCCCc--ccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEe
Q 003474 173 YEKFGFIR---SDTGITYREWAPGAKSASLIG-DFNNWNPN--ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMD 246 (817)
Q Consensus 173 y~~lG~~~---~~~gv~fr~WAP~A~~V~Lvg-dFN~W~~~--~~pm~r~~~GvWei~lp~~~~g~~~~~~g~~yk~~~~ 246 (817)
.-++|++. ...|+.|.+|+.+|++|.|+. |...-... .+++....+.+|++.+|+... |..|.|++.
T Consensus 17 ~~plga~~~~~~~~g~~f~l~s~~a~~v~l~l~d~~~~~~~~~~~~~~~~~G~iw~~~~p~~~~-------g~~y~yr~~ 89 (697)
T COG1523 17 PYPLGATVIDIDGDGVNFALFSSHAERVELCLFDEAGNTEEGRLYPYDGELGAIWHLWLPGAKP-------GQVYGYRVH 89 (697)
T ss_pred cccccceeeeccCcceEEeeeccccceEEEEecCcccccccccccccCCccccEEEEEcCCCce-------eeEEEEecC
Confidence 45899997 448999999999999999994 22211122 156766666799999998665 568999986
Q ss_pred CCC----Cc-----cccCCccceeeccCCCCC-------------------------CCceEEeCCCccccccccCCCC-
Q 003474 247 TPS----GI-----KDSIPAWIKFSVQAPGEI-------------------------PYNGIYYDPPEEEKYVFQHPQP- 291 (817)
Q Consensus 247 ~~~----g~-----~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~d~~~~~~~~~~~~~~- 291 (817)
.+. |. +..++||++......... ...+++.++. +.|+.+++
T Consensus 90 g~~~~~~g~~f~~~k~l~dpya~~l~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~Ksvv~~~~----~~w~~~~~~ 165 (697)
T COG1523 90 GPYDPEEGHRFDPNKLLLDPYAKALDGDLKWGTPALFGYYYGYQITNLSPDRDSADPYPKSVVIDPL----FDWENDKPP 165 (697)
T ss_pred CCcCCccCeeeccccccccceeEEeccccccCccccccccccccccccCccccccccCCceEEeccc----cccccCCCC
Confidence 642 21 234678887655332100 1134454442 67876543
Q ss_pred CCC-CCceEEEeecCCCC-CC-----CCCCCHHhhHhhh--hhHHHHcCCCEEEEcCcccCC---------CCCCCCCcc
Q 003474 292 KKP-KSLRIYEAHVGMSS-TE-----PIINTYANFRDDV--LPRIKRLGYNAVQIMAVQEHS---------YYASFGYHV 353 (817)
Q Consensus 292 ~~~-~~~~IYE~hv~~~~-~~-----~~~G~~~~~~~~~--L~ylk~LGv~~I~LmPi~e~~---------~~~s~GY~v 353 (817)
..| ++++|||+|||+|| .+ ...|||.+++ +. |+|||+||||||+||||+.+. ...+|||+|
T Consensus 166 ~~p~~~~vIYE~HVr~fT~~~~~v~~~~rGTy~gl~-~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP 244 (697)
T COG1523 166 RIPWEDTVIYEAHVRDFTQLHPGVPEELRGTYLGLA-EPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDP 244 (697)
T ss_pred CCCccceEEEEeeecccccCCCCCchhhccceehhc-cccHHHHHHHhCCceEEEecceEEeccccccccccccccCCCc
Confidence 334 78999999999998 33 3459999999 56 999999999999999999863 235799999
Q ss_pred ccccCCCCCCCC-------HHHHHHHHHHHHHcCcEEEEeeeccccCCCc-cccCcCCCCCCCC-ccccCCCCCc--ccC
Q 003474 354 TNFFAPSSRCGT-------PDDLKSLIDKAHELGLLVLMDIVHSHASNNV-LDGLNMFDGTDGH-YFHSGSRGYH--WMW 422 (817)
Q Consensus 354 ~dy~avd~~~Gt-------~edlk~LV~~aH~~GI~VIlDvV~NH~s~~~-~~~l~~fdg~~~~-yf~~~~~g~~--~~w 422 (817)
.+||+|+++|.+ ..|||.||+++|++||+||||||+|||+... ......|.|.++. ||...+.|+. +..
T Consensus 245 ~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~~~g~t~~f~~id~~~Yyr~~~dg~~~N~TG 324 (697)
T COG1523 245 LNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGNELGPTLSFRGIDPNYYYRLDPDGYYSNGTG 324 (697)
T ss_pred ccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeccCcccccCcCcccccccCCcCceEEECCCCCeecCCc
Confidence 999999999976 3599999999999999999999999997532 2334568888776 4444554543 445
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCcccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhc
Q 003474 423 DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHG 502 (817)
Q Consensus 423 ~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~~~v~~ 502 (817)
+...+|.++|+||++|+++|+||++||||||||||.++.+.....+ |. ..+ .++..+. -..
T Consensus 325 cGNtln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l~r~~~~----~~------------~~~-~l~~~~~--~~p 385 (697)
T COG1523 325 CGNTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRETML----FD------------INA-NLFLAGE--GDP 385 (697)
T ss_pred cCcccccCChHHHHHHHHHHHHHHHHhCCCceeecchhhccccccc----cc------------cCc-chhhhcc--CCc
Confidence 6689999999999999999999999999999999999876332110 00 000 0111110 011
Q ss_pred cCCCEEEEEecCCCCCCcccccccCCcccc--hh---hhHHHHHHHHHHHhhcchhhhhhhhHHhhc--------cCccc
Q 003474 503 LYPEAVSIGEDVSGMPTFCIPVQDGGVGFD--YR---LQMAIADKWIELLKKRDEDWKMGAIVHTMT--------NRRWL 569 (817)
Q Consensus 503 ~~P~~~~IgE~~~~~p~~~~~~~~gglgFD--~~---l~~~~~d~~~~~l~~~~~~~~~~~l~~~l~--------~~~~~ 569 (817)
..-+..+|||.|.-.+.. ++-|. |. ++ ++-.+.|....++.+... ..+.+...+. ..+-+
T Consensus 386 ~l~~~kliAepwD~g~~g---yqvG~--Fpd~~~~aewng~~rD~vr~F~~G~~~--~~~~~a~rl~gS~d~~~~~~~~p 458 (697)
T COG1523 386 VLSGVKLIAEPWDIGPGG---YQVGN--FPDSPRWAEWNGRFRDDVRRFWRGDAG--LVGEFAKRLAGSSDLYKRNGRRP 458 (697)
T ss_pred cccCceeeecchhhcCCC---ccccc--CCCccchhhhCCcccccccceeeCCCc--cHHHHHHHhhcCcchhhccCCCc
Confidence 122445888888543311 11121 32 22 222222333333332211 1112222222 12346
Q ss_pred ccceecccCccccccCccchhhhccC----hh----------HHhhhhcCCCCChhhhHHHHHHHHH-HHHHHhCCCCce
Q 003474 570 EKCVAYAESHDQALVGDKTIAFWLMD----KD----------MYDFMALDRPSTPRIDRGIALHKMI-RLVTMGLGGEAY 634 (817)
Q Consensus 570 ~~~v~y~esHD~~r~g~~t~~~~~~~----~~----------~~~~~~~~~~~~~~~~~~~al~kla-~~l~ltlpG~p~ 634 (817)
.++|||+.+||.-++.|.. ++-.-. .+ .+..+.....+.+.+..+.++.+.. .+.++...|+|
T Consensus 459 ~~sINyv~aHDgfTL~D~v-sy~~khneange~nrdg~~~n~s~N~g~eg~t~~p~i~~~re~~~~~~~~tlllsqG~p- 536 (697)
T COG1523 459 SQSINYVTAHDGFTLWDLV-SYNHKHNEANGENNRDGHNDNYSWNHGVEGPTGDPFIHAGRERQRTNLLATLLLSQGTP- 536 (697)
T ss_pred cceeeEEeecCCCcHhHhh-hhccCCChhhcchhhhhhhhhhccccccccCCCCHHHHHhHHHHHHHHHHHHHhhcCCc-
Confidence 6789999999998765421 111000 01 0001111223345554444333333 34457778997
Q ss_pred EeecccccCCCCCCCCCCCCCCCCCCCcCCCCCCCCcc--cccccCCCccccccchHHHHHHHHHHHHHHHhCCCCCCc-
Q 003474 635 LNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDK--CRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEH- 711 (817)
Q Consensus 635 l~y~G~E~G~~e~~d~p~~~~~~~~~~~~~gn~~s~~~--~r~~~~w~~~~~~~~~~l~~f~r~Li~LR~~~~~l~~g~- 711 (817)
|+-+|+|+|+..+ ||+++|+. ..+.++|.. ..++.+.+|.+.||+||+++++++...
T Consensus 537 ml~~gDe~~rtq~-----------------gnnNsYcqdn~inwlDW~~---~~~~~l~~f~~~lIaLRk~~~af~~~~f 596 (697)
T COG1523 537 MLLAGDEFGRTQY-----------------GNNNAYCQDNEINWLDWST---EANNDLVEFTKGLIALRKAHPAFRRRSF 596 (697)
T ss_pred ccccccccccccc-----------------cccccccCCcccceeccCc---cccHHHHHHHHHHHHHhhhcchhcccch
Confidence 5599999999763 88999964 567899982 467899999999999999999886521
Q ss_pred E----------EE----------eeecCCCcEEEEEc----CcEEEEEEcCCCCcccceEEcccCCCceEEEEcCCCCCc
Q 003474 712 Q----------YV----------SRKDEGDRVIVFER----GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLF 767 (817)
Q Consensus 712 ~----------~i----------~~~~~~~~Vlaf~R----~~llvV~Nf~~~~~~~~~~i~v~~~g~~~~vl~sd~~~~ 767 (817)
. |. .+.......+++.. +.++|++|-.. ....++++... ++|..++++....
T Consensus 597 ~~~~~~~~~i~~~~~~g~~~~~~~w~~~~~~~l~~~l~~~~~~~lv~~N~~~--~~~~~~lp~~~-~~~~~~~~~~~~~- 672 (697)
T COG1523 597 FEGKRGVKDITWLNWNGIPLTQDDWNNGFTGALAVVLDGDKERLLVLINATA--EPVEFELPEDE-GKWAGLVDTSTPP- 672 (697)
T ss_pred hhccCCCcccceeccCCeeechhcccCCCCceEEEEecCCCccEEEEecCCc--cccceeccccc-CcceeeecccCCC-
Confidence 1 11 01122233455544 37999999663 33456665433 6788777653321
Q ss_pred CCccccCCCcceeccccccCCCCeEEEEEEcCceEEEEEEe
Q 003474 768 GGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYALA 808 (817)
Q Consensus 768 gG~~~~~~~~~~~~~~~~~~~~~~~i~l~lpp~s~~Vl~~~ 808 (817)
+. .. ..+.++++|+.||...
T Consensus 673 -~~----------------~~----~~~~~~~~s~~vl~~~ 692 (697)
T COG1523 673 -GF----------------DI----REVSLPGRSVLVLTRR 692 (697)
T ss_pred -Cc----------------cc----ceeecCCcEEEEEeec
Confidence 00 00 1588899999998754
No 25
>PRK09505 malS alpha-amylase; Reviewed
Probab=100.00 E-value=1.2e-51 Score=484.39 Aligned_cols=365 Identities=18% Similarity=0.230 Sum_probs=247.6
Q ss_pred CCCCCceEEEeecCCCCCCC------------C--------CCCHHhhHhhhhhHHHHcCCCEEEEcCcccCC-------
Q 003474 292 KKPKSLRIYEAHVGMSSTEP------------I--------INTYANFRDDVLPRIKRLGYNAVQIMAVQEHS------- 344 (817)
Q Consensus 292 ~~~~~~~IYE~hv~~~~~~~------------~--------~G~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~------- 344 (817)
...++.+||+|.+..|.+.+ + -|+|+|++ ++|||||+||||+|||+||+++.
T Consensus 185 ~~W~~aviYqI~~DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl~Gi~-~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g 263 (683)
T PRK09505 185 FDWHNATVYFVLTDRFENGDPSNDHSYGRHKDGMQEIGTFHGGDLRGLT-EKLDYLQQLGVNALWISSPLEQIHGWVGGG 263 (683)
T ss_pred hhhccCcEEEEehhhhcCCCcccccccCcCCCCccccCcccCCCHHHHH-HhhHHHHHcCCCEEEeCccccccccccccc
Confidence 33468899999999985321 1 28999999 69999999999999999999872
Q ss_pred ------CCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeeccccCCCccccC-----cC-C-------CC
Q 003474 345 ------YYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGL-----NM-F-------DG 405 (817)
Q Consensus 345 ------~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~l-----~~-f-------dg 405 (817)
.+++|||++.||+.|+++|||.+|||+||++||++||+||||+|+||++..+.... .. + .+
T Consensus 264 ~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~~~~~~~~~~~~ 343 (683)
T PRK09505 264 TKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQFGALYLSGDENKKT 343 (683)
T ss_pred cccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCcccccccccccchhhhhhhccccccc
Confidence 35789999999999999999999999999999999999999999999995321000 00 0 00
Q ss_pred CC----------CCccccC--------CCCCcccC-------------------------CCCCCCCC------------
Q 003474 406 TD----------GHYFHSG--------SRGYHWMW-------------------------DSRLFNYG------------ 430 (817)
Q Consensus 406 ~~----------~~yf~~~--------~~g~~~~w-------------------------~~~~ln~~------------ 430 (817)
.. +..|+.. ...+...| ..|+||++
T Consensus 344 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te~~~~~~lp~f~~ 423 (683)
T PRK09505 344 LGERWSDWQPAAGQNWHSFNDYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTQASGLPVFYA 423 (683)
T ss_pred cCcccccccccccccccccccccccCCccccccccccccccccccccccccccccccccccCCcccccCccccccchhhh
Confidence 00 0111110 00011011 23556665
Q ss_pred -----------CHHHHHHHHHHHHHHHHhCCccEEEEecCCcccccccCccccccCCcccccCcccChhHHHHHHHHHHH
Q 003474 431 -----------SWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDM 499 (817)
Q Consensus 431 -----------~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~~~ 499 (817)
||+|+++|++++++|++++||||||+|+|++|. .+||++++..
T Consensus 424 ~~p~~~~~~~~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaakhV~--------------------------~~FW~~~~~~ 477 (683)
T PRK09505 424 NKPDTRAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVE--------------------------LPAWQQLKQE 477 (683)
T ss_pred cCcccccccccCHHHHHHHHHHHHHHHHhcCCCEEEEechHhCC--------------------------HHHHHHHHHH
Confidence 569999999999999999999999999999882 2467777665
Q ss_pred h-------hccCC-------CEEEEEecCCCCCCcccccccCCc--ccchhhhHHHHHHHHHHHhhcchhhhhhhhHHhh
Q 003474 500 I-------HGLYP-------EAVSIGEDVSGMPTFCIPVQDGGV--GFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTM 563 (817)
Q Consensus 500 v-------~~~~P-------~~~~IgE~~~~~p~~~~~~~~ggl--gFD~~l~~~~~d~~~~~l~~~~~~~~~~~l~~~l 563 (817)
+ ++.+| ++++|||.|...+... .+...++ .|+|.+...+.+. ...+.. +..+...+
T Consensus 478 ~~~~l~~~k~~~~d~~~~~~~~~~vGEvw~~~~~~~-~y~~~~fDsv~NF~~~~~~~~~-~~~~~~------l~~~~~~~ 549 (683)
T PRK09505 478 ASAALAEWKKANPDKALDDAPFWMTGEAWGHGVMKS-DYYRHGFDAMINFDYQEQAAKA-VDCLAQ------MDPTYQQM 549 (683)
T ss_pred HHHHHHHHHHhccccccccCCeEEEEEecCCchhhH-HHHhhcCccccCchHHHHHHHH-HHHHHH------HHHHHHHH
Confidence 5 33444 4899999996544322 2222221 2444433222111 111111 11111112
Q ss_pred ccCcccccceecccCccccccCccchhhhccChhHHhhhhcCCCCChhhhHHHHHHHHHHHHHHhCCCCceEeecccccC
Q 003474 564 TNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFG 643 (817)
Q Consensus 564 ~~~~~~~~~v~y~esHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~kla~~l~ltlpG~p~l~y~G~E~G 643 (817)
....-....++|++|||+.|+.+.. .. .+++|+|.+++|++||+|+| |||+|+|
T Consensus 550 ~~~~~~~~~l~FLdNHDt~Rf~s~~------~~-------------------~~~~klAaall~tlpGiP~I-YYGdEiG 603 (683)
T PRK09505 550 AEKLQDFNVLSYLSSHDTRLFFEGG------QS-------------------YAKQRRAAELLLLAPGAVQI-YYGDESA 603 (683)
T ss_pred hhhcCccceeecccCCChhhhhhhc------Cc-------------------hHHHHHHHHHHHhCCCCcEE-EechhhC
Confidence 1111112356899999999875321 00 14678899999999999988 9999999
Q ss_pred CCCCCCCCCCCCCCCCCCcCCCCCCCCcccccccCCCccccccchHHHHHHHHHHHHHHHhCCCCCCcEEEeeecCCCcE
Q 003474 644 HPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRV 723 (817)
Q Consensus 644 ~~e~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LR~~~~~l~~g~~~i~~~~~~~~V 723 (817)
+..... + ......+|++|+|.+.. ....+|++|+|+|++||+++|+|+.|..... ..+++
T Consensus 604 m~gg~~---------------g-~DP~~~~R~~M~W~~~~-~~~~~Ll~~~kkLi~LRk~~pAL~~G~~~~l---~~~~~ 663 (683)
T PRK09505 604 RPFGPT---------------G-SDPLQGTRSDMNWQEVS-GKSAALLAHWQKLGQFRARHPAIGAGKQTTL---SLKQY 663 (683)
T ss_pred ccCCCC---------------C-CCCcccccccCCccccc-cchHHHHHHHHHHHHHHhhCHHhhCCceEEe---ccCCE
Confidence 964210 0 11122488999998632 2456899999999999999999999864432 23579
Q ss_pred EEEEc----CcEEEEEEc
Q 003474 724 IVFER----GNLVFVFNF 737 (817)
Q Consensus 724 laf~R----~~llvV~Nf 737 (817)
++|.| +.++||+|-
T Consensus 664 ~aF~R~~~~d~vlVv~~~ 681 (683)
T PRK09505 664 YAFVREHGDDKVMVVWAG 681 (683)
T ss_pred EEEEEEeCCCEEEEEEeC
Confidence 99999 568888874
No 26
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=100.00 E-value=1.3e-50 Score=466.85 Aligned_cols=375 Identities=18% Similarity=0.203 Sum_probs=259.9
Q ss_pred CCHHhhHhhhhhHHHHcCCCEEEEcCcccCCC-CCCCCCcccccc---------CCCCCCCCHHHHHHHHHHHHHcCcEE
Q 003474 314 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSY-YASFGYHVTNFF---------APSSRCGTPDDLKSLIDKAHELGLLV 383 (817)
Q Consensus 314 G~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~-~~s~GY~v~dy~---------avd~~~Gt~edlk~LV~~aH~~GI~V 383 (817)
.+|++|+ ++||||++||||+|||+||++++. ..+|||+++||| +|+|+|||.+|||+||++||++||+|
T Consensus 19 ~~~~~I~-~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~v 97 (479)
T PRK09441 19 KLWNRLA-ERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKV 97 (479)
T ss_pred cHHHHHH-HHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEE
Confidence 4677899 699999999999999999999874 456999999999 79999999999999999999999999
Q ss_pred EEeeeccccCCCcc-ccC-----------------------cCCC--CCCC-------CccccCCC--------------
Q 003474 384 LMDIVHSHASNNVL-DGL-----------------------NMFD--GTDG-------HYFHSGSR-------------- 416 (817)
Q Consensus 384 IlDvV~NH~s~~~~-~~l-----------------------~~fd--g~~~-------~yf~~~~~-------------- 416 (817)
|||+|+||++.... .++ ..|+ +... .|++..+.
T Consensus 98 i~D~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (479)
T PRK09441 98 YADVVLNHKAGADEKETFRVVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWYHFSGTDYDENPDESGIFKI 177 (479)
T ss_pred EEEECcccccCCCcceeeeeeeeCccccccccCCceeecccccccCCCCCCcCCcceeCCcCCCCcccccccCcCceEEe
Confidence 99999999986432 111 0011 1000 12211100
Q ss_pred ---CCccc--C----------CCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCcccccccCccccccCCccccc
Q 003474 417 ---GYHWM--W----------DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYF 481 (817)
Q Consensus 417 ---g~~~~--w----------~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~ 481 (817)
...|. | ..++||++||+|+++|++++++|++++||||||+|+|++|.
T Consensus 178 ~~~~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~------------------ 239 (479)
T PRK09441 178 VGDGKGWDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHID------------------ 239 (479)
T ss_pred cCCCCCCccccccccCCcccccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCC------------------
Confidence 01121 1 15799999999999999999999999999999999999982
Q ss_pred CcccChhHHHHHHHHHHHhhccC-CCEEEEEecCCCCCCcccccccC----CcccchhhhHHHHHHHHHHHhhcchhhhh
Q 003474 482 GFATDVDAVVYLMLVNDMIHGLY-PEAVSIGEDVSGMPTFCIPVQDG----GVGFDYRLQMAIADKWIELLKKRDEDWKM 556 (817)
Q Consensus 482 g~~~~~~a~~fl~~~~~~v~~~~-P~~~~IgE~~~~~p~~~~~~~~g----glgFD~~l~~~~~d~~~~~l~~~~~~~~~ 556 (817)
.+||+.+++.+++.. |++++|||.|.+.+..+..+..+ ...|||.++..+.+.+.. . ....+
T Consensus 240 --------~~f~~~~~~~~~~~~~~~~~~vGE~~~~~~~~~~~y~~~~~~~~~~~Df~~~~~l~~~~~~---~--~~~~l 306 (479)
T PRK09441 240 --------AWFIKEWIEHVREVAGKDLFIVGEYWSHDVDKLQDYLEQVEGKTDLFDVPLHYNFHEASKQ---G--RDYDM 306 (479)
T ss_pred --------HHHHHHHHHHHHHhcCCCeEEEEeecCCChHHHHHHHHhcCCCceEecHHHHHHHHHHHhc---C--Cccch
Confidence 358999999988765 68999999998877555444332 135999988776554321 1 11222
Q ss_pred hhhHHhhccCcccccceecccCccccccCccchhhhccChhHHhhhhcCCCCChhhhHHHHHHHHHHHHHHhCC-CCceE
Q 003474 557 GAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLG-GEAYL 635 (817)
Q Consensus 557 ~~l~~~l~~~~~~~~~v~y~esHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~kla~~l~ltlp-G~p~l 635 (817)
..+.........+...++|++|||+.|+.... .. . .....++|.+++||+| |+|+|
T Consensus 307 ~~~~~~~~~~~~~~~~~~FldNHD~~R~~~~~------~~--------~---------~~~~~~lA~a~llT~p~GiP~I 363 (479)
T PRK09441 307 RNIFDGTLVEADPFHAVTFVDNHDTQPGQALE------SP--------V---------EPWFKPLAYALILLREEGYPCV 363 (479)
T ss_pred HhhhCcchhhcCcccceeeeccccCCCccccc------cc--------c---------cccchHHHHHHHHhCCCCceee
Confidence 22221111123455678999999999985310 00 0 0112468899999999 99988
Q ss_pred eecccccCCCCCCCCCCCCCCCCCCCcCCCCCCCCcccccccCCCccccccchHHHHHHHHHHHHHHHhCCCCCCcEEEe
Q 003474 636 NFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVS 715 (817)
Q Consensus 636 ~y~G~E~G~~e~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LR~~~~~l~~g~~~i~ 715 (817)
|||+|+|+....+ ...+++++|+|++||++++ .|.....
T Consensus 364 -YYGdE~g~~g~~~-------------------------------------~~~l~~~i~~Li~lRk~~~---~G~~~~~ 402 (479)
T PRK09441 364 -FYGDYYGASGYYI-------------------------------------DMPFKEKLDKLLLARKNFA---YGEQTDY 402 (479)
T ss_pred -EeccccCCCCCcc-------------------------------------cchHHHHHHHHHHHHHHhC---CCCeeEe
Confidence 9999999854100 1358999999999999964 4433332
Q ss_pred eecCCCcEEEEEc------CcEEEEEEcCCCCcccceEEccc-CCCceEEEEcCCCCCcCCccccCCCcceeccccccCC
Q 003474 716 RKDEGDRVIVFER------GNLVFVFNFHWNSSYSDYRVGCL-KPGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDD 788 (817)
Q Consensus 716 ~~~~~~~Vlaf~R------~~llvV~Nf~~~~~~~~~~i~v~-~~g~~~~vl~sd~~~~gG~~~~~~~~~~~~~~~~~~~ 788 (817)
..++++++|.| +.+|||+|.+. .+...+.++.. ..+.|++++..... .+. ..
T Consensus 403 --~~~~~~~~~~R~~~~~~~~vvvvinn~~-~~~~~~~~~~~~~~~~~~d~~~~~~~------------~~~------~~ 461 (479)
T PRK09441 403 --FDHPNCIGWTRSGDEENPGLAVVISNGD-AGEKTMEVGENYAGKTWRDYTGNRQE------------TVT------ID 461 (479)
T ss_pred --ecCCCEEEEEEecCCCCccEEEEEECCC-CCcEEEEeCccCCCCEeEhhhCCCCC------------eEE------EC
Confidence 24567999999 24888898873 23233555432 23457776642110 010 01
Q ss_pred CCeEEEEEEcCceEEEE
Q 003474 789 QPHSFLVYAPSRTAVVY 805 (817)
Q Consensus 789 ~~~~i~l~lpp~s~~Vl 805 (817)
..+.+.|+||++++.||
T Consensus 462 ~~G~~~~~l~~~s~~i~ 478 (479)
T PRK09441 462 EDGWGTFPVNGGSVSVW 478 (479)
T ss_pred CCCeEEEEECCceEEEe
Confidence 23458999999999997
No 27
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=100.00 E-value=1.5e-45 Score=399.77 Aligned_cols=277 Identities=24% Similarity=0.359 Sum_probs=194.9
Q ss_pred CCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeeccccC
Q 003474 314 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 393 (817)
Q Consensus 314 G~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~s 393 (817)
|||+||+ ++|||||+||||+||||||++.+. .+|||+|+||++|+|+|||.+|||+||++||++||+||||+|+||++
T Consensus 1 Gd~~gi~-~kLdyl~~lGv~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~ 78 (316)
T PF00128_consen 1 GDFRGII-DKLDYLKDLGVNAIWLSPIFESPN-GYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTS 78 (316)
T ss_dssp SSHHHHH-HTHHHHHHHTESEEEESS-EESSS-STTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEE
T ss_pred CCHHHHH-HhhHHHHHcCCCceeccccccccc-ccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccc
Confidence 8999999 699999999999999999999876 78999999999999999999999999999999999999999999999
Q ss_pred CCcccc---CcCCCCCCCCccc-------------cCCCCCcc-----------cCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003474 394 NNVLDG---LNMFDGTDGHYFH-------------SGSRGYHW-----------MWDSRLFNYGSWEVLRFLLSNARWWL 446 (817)
Q Consensus 394 ~~~~~~---l~~fdg~~~~yf~-------------~~~~g~~~-----------~w~~~~ln~~~peV~~~l~~~l~~Wl 446 (817)
.++.+. ...++.....||. ....+..| ..+.++||++||+||++|++++++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~~w~ 158 (316)
T PF00128_consen 79 DDHPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLKFWI 158 (316)
T ss_dssp TTSHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhcccccchh
Confidence 998531 1112211122222 00111111 12347899999999999999999999
Q ss_pred HhCCccEEEEecCCcccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCEEEEEecCCCCCCcccccc-
Q 003474 447 EEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQ- 525 (817)
Q Consensus 447 ~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~~~v~~~~P~~~~IgE~~~~~p~~~~~~~- 525 (817)
+ +||||||||++++|. .++|++++..+++..|++++|||.+.+....+....
T Consensus 159 ~-~giDGfR~D~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~i~E~~~~~~~~~~~~~~ 211 (316)
T PF00128_consen 159 E-EGIDGFRLDAAKHIP--------------------------KEFWKEFRDEVKEEKPDFFLIGEVWGGDNEDLRQYAY 211 (316)
T ss_dssp H-TTESEEEETTGGGSS--------------------------HHHHHHHHHHHHHHHTTSEEEEEESSSSHHHHHHHHH
T ss_pred h-ceEeEEEEccccccc--------------------------hhhHHHHhhhhhhhccccceeeeeccCCccccchhhh
Confidence 9 579999999999883 258999999999988999999999976543222221
Q ss_pred cCCc----ccchhhhHHHHHHHHHHHhhcchhhhhhhhHHh----hccCcccccceecccCccccccCccchhhhccChh
Q 003474 526 DGGV----GFDYRLQMAIADKWIELLKKRDEDWKMGAIVHT----MTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKD 597 (817)
Q Consensus 526 ~ggl----gFD~~l~~~~~d~~~~~l~~~~~~~~~~~l~~~----l~~~~~~~~~v~y~esHD~~r~g~~t~~~~~~~~~ 597 (817)
.+.. .+++..... .......... .......+... ..........++|++|||+.|+..+..
T Consensus 212 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~-------- 280 (316)
T PF00128_consen 212 DGYFDLDSVFDFPDYGL-RSSFFDFWRH--GDGDASDLANWLSSWQSSYPDPYRAVNFLENHDTPRFASRFG-------- 280 (316)
T ss_dssp HGTTSHSEEEHHHHHHH-HHHHHHHHTT--TSSHHHHHHHHHHHHHHHSTTGGGEEEESSHTTSSTHHHHTT--------
T ss_pred ccccccchhhccccccc-ccchhhhhcc--ccchhhhhhhhhhhhhhhhcccceeeecccccccccchhhhc--------
Confidence 1111 133332111 1111111111 11111111111 111222456789999999998653211
Q ss_pred HHhhhhcCCCCChhhhHHHHHHHHHHHHHHhCCCCceEeecccccCCCCC
Q 003474 598 MYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEW 647 (817)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~al~kla~~l~ltlpG~p~l~y~G~E~G~~e~ 647 (817)
....+++++.+++||+||+|+| |||+|+|+.+-
T Consensus 281 ----------------~~~~~~~~a~~~ll~~pG~P~i-y~G~E~g~~~~ 313 (316)
T PF00128_consen 281 ----------------NNRDRLKLALAFLLTSPGIPMI-YYGDEIGMTGS 313 (316)
T ss_dssp ----------------THHHHHHHHHHHHHHSSSEEEE-ETTGGGTBBTS
T ss_pred ----------------ccchHHHHHHHHHHcCCCccEE-EeChhccCCCC
Confidence 0112678999999999999866 99999999753
No 28
>PLN00196 alpha-amylase; Provisional
Probab=100.00 E-value=3.2e-43 Score=395.63 Aligned_cols=316 Identities=19% Similarity=0.270 Sum_probs=220.2
Q ss_pred CCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCC-CCCCCHHHHHHHHHHHHHcCcEEEEeeeccc
Q 003474 313 INTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 391 (817)
Q Consensus 313 ~G~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd-~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH 391 (817)
-|.|++|+ ++||||++||||+|||+|++++. ++|||++.|||.++ ++|||.+|||+||++||++||+||+|+|+||
T Consensus 40 gg~~~~i~-~kldyL~~LGvtaIWL~P~~~s~--s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH 116 (428)
T PLN00196 40 GGWYNFLM-GKVDDIAAAGITHVWLPPPSHSV--SEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINH 116 (428)
T ss_pred CcCHHHHH-HHHHHHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccC
Confidence 36899999 69999999999999999999875 46999999999999 6999999999999999999999999999999
Q ss_pred cCCCccccCc---CCCC-C---CCCcccc----C------CCCCcc----cCCCCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 003474 392 ASNNVLDGLN---MFDG-T---DGHYFHS----G------SRGYHW----MWDSRLFNYGSWEVLRFLLSNARWWLEEYK 450 (817)
Q Consensus 392 ~s~~~~~~l~---~fdg-~---~~~yf~~----~------~~g~~~----~w~~~~ln~~~peV~~~l~~~l~~Wl~e~g 450 (817)
++.++.+... .|.+ . ...|+.. + ..+... ..+.|+||+.||+|+++|++++++|++++|
T Consensus 117 ~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~wl~~~~G 196 (428)
T PLN00196 117 RTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQRELIGWLLWLKSDIG 196 (428)
T ss_pred cccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCccCCCCHHHHHHHHHHHHHHhhCCC
Confidence 9977642211 1221 1 1112210 0 001111 123589999999999999999999988899
Q ss_pred ccEEEEecCCcccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCEEEEEecCCCCCC-----------
Q 003474 451 FDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPT----------- 519 (817)
Q Consensus 451 vDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~~~v~~~~P~~~~IgE~~~~~p~----------- 519 (817)
|||||||+|++|. ..|++++ +++.+| .++|||.|.+...
T Consensus 197 iDG~RlD~ak~~~--------------------------~~f~~~~---v~~~~p-~f~VGE~W~~~~~~~~~~~~~~~~ 246 (428)
T PLN00196 197 FDAWRLDFAKGYS--------------------------AEVAKVY---IDGTEP-SFAVAEIWTSMAYGGDGKPEYDQN 246 (428)
T ss_pred CCEEEeehhhhCC--------------------------HHHHHHH---HHccCC-cEEEEEEeccccccccCCccccch
Confidence 9999999998873 1366554 455566 7899999975210
Q ss_pred ----ccccccc--C-----CcccchhhhHHHHHHHHHHHhhcchhhhhhhhHHhhc--cCcccccceecccCccccccCc
Q 003474 520 ----FCIPVQD--G-----GVGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMT--NRRWLEKCVAYAESHDQALVGD 586 (817)
Q Consensus 520 ----~~~~~~~--g-----glgFD~~l~~~~~d~~~~~l~~~~~~~~~~~l~~~l~--~~~~~~~~v~y~esHD~~r~g~ 586 (817)
.+..+.+ + .+.|||.+...... .+.. +.|...+...... ...++.++|+|++|||+.|...
T Consensus 247 ~~r~~l~~~l~~~g~~~~~~~~fDF~~~~~~~~----~~~~--~~~~l~~~~~~~~~~~~~~P~~aVtFvdNHDT~r~~~ 320 (428)
T PLN00196 247 AHRQELVNWVDRVGGAASPATVFDFTTKGILNV----AVEG--ELWRLRGADGKAPGVIGWWPAKAVTFVDNHDTGSTQH 320 (428)
T ss_pred hhHHHHHHHHHhcCCccCcceeecccchHHHHH----HhcC--CchhhhhhcccCcchhhcChhhceeeccCCCCccccc
Confidence 0001111 1 12477776542211 1111 2232221110011 2356778999999999988632
Q ss_pred cchhhhccChhHHhhhhcCCCCChhhhHHHHHHHHHHHHHHhCCCCceEeecccccCCCCCCCCCCCCCCCCCCCcCCCC
Q 003474 587 KTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGN 666 (817)
Q Consensus 587 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~kla~~l~ltlpG~p~l~y~G~E~G~~e~~d~p~~~~~~~~~~~~~gn 666 (817)
+ +..+ ..+.++|.+++||+||+||| |||+=
T Consensus 321 --~--~~~~--------------------~~~~~lAyA~iLT~pG~P~I-yYg~~------------------------- 350 (428)
T PLN00196 321 --M--WPFP--------------------SDKVMQGYAYILTHPGNPCI-FYDHF------------------------- 350 (428)
T ss_pred --c--CCCc--------------------cchHHHHHHHHHcCCCcceE-eeCCC-------------------------
Confidence 1 1000 12458899999999999999 99831
Q ss_pred CCCCcccccccCCCccccccchHHHHHHHHHHHHHHHhCCCCCCcEEEeeecCCCcEEEEEc-CcEEEEEEcC
Q 003474 667 NFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFER-GNLVFVFNFH 738 (817)
Q Consensus 667 ~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LR~~~~~l~~g~~~i~~~~~~~~Vlaf~R-~~llvV~Nf~ 738 (817)
++| .+.+++++|+++|+++++++.|...+.. .++.|++++| +.++|.+|..
T Consensus 351 ----------~~~---------~~~~~i~~Li~~Rk~~~~~~~g~~~~~~--a~~d~yv~~~~~~~~~~i~~~ 402 (428)
T PLN00196 351 ----------FDW---------GLKEEIAALVSIRNRNGITPTSELRIME--ADADLYLAEIDGKVIVKIGSR 402 (428)
T ss_pred ----------cCc---------cHHHHHHHHHHHHHhCCCcCCccEEEEE--ecCCEEEEEECCEEEEEECCC
Confidence 233 2445899999999999999988655543 3456999999 5788889875
No 29
>PLN02361 alpha-amylase
Probab=100.00 E-value=3.4e-41 Score=374.97 Aligned_cols=315 Identities=16% Similarity=0.234 Sum_probs=219.5
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeeccccCC
Q 003474 315 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASN 394 (817)
Q Consensus 315 ~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~s~ 394 (817)
-|++|+ ++||||++||||+|||+|++++.. +|||++.|||.++|+|||.+|||+||++||++||+||+|+|+||++.
T Consensus 27 ~w~~i~-~kl~~l~~lG~t~iwl~P~~~~~~--~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~~g 103 (401)
T PLN02361 27 WWRNLE-GKVPDLAKSGFTSAWLPPPSQSLA--PEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINHRVG 103 (401)
T ss_pred HHHHHH-HHHHHHHHcCCCEEEeCCCCcCCC--CCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEccccccC
Confidence 578998 799999999999999999998764 59999999999999999999999999999999999999999999964
Q ss_pred Ccc---ccCcCCCCCCCCcc-----cc-CCCCCcc----cCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCc
Q 003474 395 NVL---DGLNMFDGTDGHYF-----HS-GSRGYHW----MWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTS 461 (817)
Q Consensus 395 ~~~---~~l~~fdg~~~~yf-----~~-~~~g~~~----~w~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~ 461 (817)
... ...+.|+|....|. .. ...+... ..+.++||+.||+||++|++++++|++++||||||+|+|++
T Consensus 104 ~~~~~~~~y~~~~g~~~~wd~~~~~~~~~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDavk~ 183 (401)
T PLN02361 104 TTQGHGGMYNRYDGIPLPWDEHAVTSCTGGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDFAKG 183 (401)
T ss_pred CCCCCCCCcccCCCCcCCCCccccccccCCCCCccCCCCCccCCccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEecccc
Confidence 321 11223443211111 10 0011111 12359999999999999999998777779999999999998
Q ss_pred ccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCEEEEEecCCCCC----C------------cccccc
Q 003474 462 MMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMP----T------------FCIPVQ 525 (817)
Q Consensus 462 m~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~~~v~~~~P~~~~IgE~~~~~p----~------------~~~~~~ 525 (817)
|. ..||+++.+.+ .| .++|||.|.+.. . .+..+.
T Consensus 184 ~~--------------------------~~f~~~~~~~~---~p-~f~VGE~w~~~~~~~~d~~~~y~~~~~~~~l~~~~ 233 (401)
T PLN02361 184 YS--------------------------AKFVKEYIEAA---KP-LFSVGEYWDSCNYSGPDYRLDYNQDSHRQRIVNWI 233 (401)
T ss_pred CC--------------------------HHHHHHHHHhh---CC-eEEEEEEecCCCcCCcccccchhhhhHHHHHHHHH
Confidence 82 34888886654 35 889999997632 1 011111
Q ss_pred c--CC--cccchhhhHHHHHHHHHHHhhcchhhhhhhhHHh--hccCcccccceecccCccccccCccchhhhccChhHH
Q 003474 526 D--GG--VGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHT--MTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMY 599 (817)
Q Consensus 526 ~--gg--lgFD~~l~~~~~d~~~~~l~~~~~~~~~~~l~~~--l~~~~~~~~~v~y~esHD~~r~g~~t~~~~~~~~~~~ 599 (817)
. ++ ..|||++...+.+.+. .+.|.+.+.... .....++.++|+|++|||+.|... .|..+
T Consensus 234 ~~~~~~~~~fDF~l~~~l~~a~~------~~~~~l~~~~~~~~~~~~~~p~~aVTFvdNHDt~r~~~----~~~~~---- 299 (401)
T PLN02361 234 DGTGGLSAAFDFTTKGILQEAVK------GQWWRLRDAQGKPPGVMGWWPSRAVTFIDNHDTGSTQA----HWPFP---- 299 (401)
T ss_pred HhcCCcceeecHHHHHHHHHHHh------hhHHHHhhhhcCCcchhhcChhhceEecccCcCcchhh----ccCCc----
Confidence 1 22 2489998877765541 122332222110 012346788999999999987531 11111
Q ss_pred hhhhcCCCCChhhhHHHHHHHHHHHHHHhCCCCceEeecccccCCCCCCCCCCCCCCCCCCCcCCCCCCCCcccccccCC
Q 003474 600 DFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDL 679 (817)
Q Consensus 600 ~~~~~~~~~~~~~~~~~al~kla~~l~ltlpG~p~l~y~G~E~G~~e~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w 679 (817)
....++|.+++||+||+||| |||+= ++|
T Consensus 300 ----------------~~~~~~AyA~iLT~pG~P~V-yyg~~-----------------------------------~~~ 327 (401)
T PLN02361 300 ----------------SDHIMEGYAYILTHPGIPTV-FYDHF-----------------------------------YDW 327 (401)
T ss_pred ----------------hHHHHHHHHHHHCCCCcCeE-eeccc-----------------------------------cCC
Confidence 23556789999999999999 99861 112
Q ss_pred CccccccchHHHHHHHHHHHHHHHhCCCCCCcEEEeeecCCCcEEEEEcCcEEEEEE
Q 003474 680 GDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFERGNLVFVFN 736 (817)
Q Consensus 680 ~~~~~~~~~~l~~f~r~Li~LR~~~~~l~~g~~~i~~~~~~~~Vlaf~R~~llvV~N 736 (817)
. ..+.+++++|+.|||++++++.+...+.. .+++-.+|-..++++|=++
T Consensus 328 ~-------~~~~~~I~~Li~lRk~~~~~~~s~~~i~~-a~~~~y~a~i~~~~~~k~g 376 (401)
T PLN02361 328 G-------GSIHDQIVKLIDIRKRQDIHSRSSIRILE-AQSNLYSAIIDEKLCMKIG 376 (401)
T ss_pred C-------hHHHHHHHHHHHHHHhCCCCCCCcEEEEE-ecCCeEEEEECCeEEEEec
Confidence 1 25788999999999999999988655533 3344455555566555444
No 30
>PRK13840 sucrose phosphorylase; Provisional
Probab=100.00 E-value=2.5e-39 Score=365.76 Aligned_cols=375 Identities=15% Similarity=0.152 Sum_probs=247.8
Q ss_pred CCCHHhhHhhhhh-HHHHcCCCEEEEcCcccC-CCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeecc
Q 003474 313 INTYANFRDDVLP-RIKRLGYNAVQIMAVQEH-SYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 390 (817)
Q Consensus 313 ~G~~~~~~~~~L~-ylk~LGv~~I~LmPi~e~-~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~N 390 (817)
.|++++++ ++|| ||++| |++|||||+++. +. ..+||+|+||++|+|+|||.+||++|++ ||+||+|+|+|
T Consensus 16 ~GdL~gl~-~kLd~yL~~l-v~~vhllPff~psp~-sD~GYdv~DY~~VDP~fGt~eDf~~L~~-----giklmlDlV~N 87 (495)
T PRK13840 16 DGGLKSLT-ALLDGRLDGL-FGGVHILPFFYPIDG-ADAGFDPIDHTKVDPRLGDWDDVKALGK-----THDIMADLIVN 87 (495)
T ss_pred CCCHhHHH-HHHHHHHHHH-hCeEEECCCccCCCC-CCCCCCCcChhhcCcccCCHHHHHHHHh-----CCeEEEEECCC
Confidence 38999999 7999 59999 999999999954 44 5699999999999999999999999995 99999999999
Q ss_pred ccCCCccccCcCC-CCC---CCCcccc-C-------------------CC----------C-CcccC-----CCCCCCCC
Q 003474 391 HASNNVLDGLNMF-DGT---DGHYFHS-G-------------------SR----------G-YHWMW-----DSRLFNYG 430 (817)
Q Consensus 391 H~s~~~~~~l~~f-dg~---~~~yf~~-~-------------------~~----------g-~~~~w-----~~~~ln~~ 430 (817)
|+|..|+++...- .+. ...||.. + +. + ..+.| +.++||+.
T Consensus 88 HtS~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~ 167 (495)
T PRK13840 88 HMSAESPQFQDVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADGKTRLVWTTFTPQQIDIDVH 167 (495)
T ss_pred cCCCCcHHHHHHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCCCceEEeccCCcccceeCCC
Confidence 9999985432210 111 1112210 0 00 0 01123 24899999
Q ss_pred CHHHHHHHHHHHHHHHHhCCccEEEEecCCcccccccCccccccCCcccccCcccC-hhHHHHHHHHHHHhhccCCCEEE
Q 003474 431 SWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATD-VDAVVYLMLVNDMIHGLYPEAVS 509 (817)
Q Consensus 431 ~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~-~~a~~fl~~~~~~v~~~~P~~~~ 509 (817)
||+|+++|+++++||++ .||||||+|++.++.+.. | ..+.+ .+.++||++++..++.. +..+
T Consensus 168 NP~V~~~i~~il~fwl~-~GVDgfRLDAv~~l~K~~-g-------------t~c~~~pe~~~~l~~lr~~~~~~--~~~l 230 (495)
T PRK13840 168 SAAGWEYLMSILDRFAA-SHVTLIRLDAAGYAIKKA-G-------------TSCFMIPETFEFIDRLAKEARAR--GMEV 230 (495)
T ss_pred CHHHHHHHHHHHHHHHH-CCCCEEEEechhhhhcCC-C-------------CCcCCChHHHHHHHHHHHHhhhc--CCEE
Confidence 99999999999999998 799999999999886541 1 11222 56789999999999765 5678
Q ss_pred EEecCCCCCCcccccccCCcccchhhhHHHHHHHHHHHhhcchhhhhhhhHHhhccCcccccceecccCccccccCccch
Q 003474 510 IGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTI 589 (817)
Q Consensus 510 IgE~~~~~p~~~~~~~~gglgFD~~l~~~~~d~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~v~y~esHD~~r~g~~t~ 589 (817)
|+|.++........-....+.|||.+...+. ..|....... +.+.+... +.+++||+.|||...+-+-..
T Consensus 231 l~Ei~~y~~~~~~~~~e~~~vYnF~Lp~ll~----~aL~~~~~~~----L~~~l~~~--p~~~~n~L~~HDgIgl~d~~~ 300 (495)
T PRK13840 231 LVEIHSYYKTQIEIAKKVDRVYDFALPPLIL----HTLFTGDVEA----LAHWLEIR--PRNAVTVLDTHDGIGIIDVGA 300 (495)
T ss_pred EEeCccccCccccccccccEEecchhhHHHH----HHHHhCCchH----HHHHHHhC--CCccEEeeecCCCCCcccccc
Confidence 9998754321111112345668887765542 3333222111 11112111 566789999999987621100
Q ss_pred ----hhhccChhHH----hhhhcC-----------CCCC--h---------hhhHHHHHHHHHHHHHHhCCCCceEeecc
Q 003474 590 ----AFWLMDKDMY----DFMALD-----------RPST--P---------RIDRGIALHKMIRLVTMGLGGEAYLNFMG 639 (817)
Q Consensus 590 ----~~~~~~~~~~----~~~~~~-----------~~~~--~---------~~~~~~al~kla~~l~ltlpG~p~l~y~G 639 (817)
..-+++.+.. ..+.+. ..+. + .....-++..++++++|++||+|-| |||
T Consensus 301 ~~~~~~gll~~~e~~~l~~~~~~~~~~~~~~~~~~~as~~~~Y~in~~~~~Al~~~d~r~lla~ai~~~~~GiP~i-Y~~ 379 (495)
T PRK13840 301 DDRGLAGLLPDEQIDNLVETIHANSHGESRQATGAAASNLDLYQVNCTYYDALGRNDQDYLAARAIQFFAPGIPQV-YYV 379 (495)
T ss_pred cccccccCCCHHHHHHHHHHHHHhccCceeecCCcccccccchhhhccHHHHhcCCcHHHHHHHHHHHcCCCccee-eec
Confidence 0011222211 112110 0000 0 0011123667889999999999866 999
Q ss_pred cccCCCCCCCCCCCCCCCCCCCcCCCCCCCCcccccccCCCccccccchHHHHHHHHHHHHHHHhCCCCCCcEEEeeecC
Q 003474 640 NEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDE 719 (817)
Q Consensus 640 ~E~G~~e~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LR~~~~~l~~g~~~i~~~~~ 719 (817)
+|+|..+ |.... ...+.++.-+|..++|.+.+..-...+++-.++|+++|+++|++.+.+.. ...
T Consensus 380 ~ll~~~N--D~~~~----------~~t~~~R~inR~~~~~~~~~~~l~~~v~~~l~~li~~R~~~~aF~~~~~~---~~~ 444 (495)
T PRK13840 380 GLLAGPN--DMELL----------ARTNVGRDINRHYYSTAEIDEALERPVVKALNALIRFRNEHPAFDGAFSY---AAD 444 (495)
T ss_pred hhhccCc--cHHHH----------HhcCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcccCceEEE---ecC
Confidence 9999976 32110 12456788899999999866555667999999999999999999655433 233
Q ss_pred CCcEEEEEc--C--cEEEEEEcC
Q 003474 720 GDRVIVFER--G--NLVFVFNFH 738 (817)
Q Consensus 720 ~~~Vlaf~R--~--~llvV~Nf~ 738 (817)
+++-++..| + ...+.+||.
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~ 467 (495)
T PRK13840 445 GDTSLTLSWTAGDSSASLTLDFA 467 (495)
T ss_pred CCCeEEEEEecCCceEEEEEEcc
Confidence 445566665 2 456667877
No 31
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=100.00 E-value=6.5e-40 Score=368.32 Aligned_cols=373 Identities=13% Similarity=0.079 Sum_probs=247.1
Q ss_pred CCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeecc
Q 003474 311 PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 390 (817)
Q Consensus 311 ~~~G~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~N 390 (817)
+++|+++++++ + ||++ ||++|||||+|+++. ++||+|+||++|+|+|||.+||++|+++ |+||+|+|+|
T Consensus 14 ~glgdl~g~l~-~--yL~~-~v~~i~LlPffps~s--D~GYdv~DY~~VDP~~Gt~~Df~~L~~~-----~kvmlDlV~N 82 (470)
T TIGR03852 14 KNLKELNKVLE-N--YFKD-AVGGVHLLPFFPSTG--DRGFAPMDYTEVDPAFGDWSDVEALSEK-----YYLMFDFMIN 82 (470)
T ss_pred CChhhHHHHHH-H--HHHH-hCCEEEECCCCcCCC--CCCcCchhhceeCcccCCHHHHHHHHHh-----hhHHhhhccc
Confidence 57889998884 5 9999 799999999998874 7999999999999999999999999997 7999999999
Q ss_pred ccCCCccccCcCC-CC---CCCCccc-c------C-C-----------C------------C-CcccC-----CCCCCCC
Q 003474 391 HASNNVLDGLNMF-DG---TDGHYFH-S------G-S-----------R------------G-YHWMW-----DSRLFNY 429 (817)
Q Consensus 391 H~s~~~~~~l~~f-dg---~~~~yf~-~------~-~-----------~------------g-~~~~w-----~~~~ln~ 429 (817)
|+|..|+++...- .+ .-..||. . + + + + ..+.| +.++|||
T Consensus 83 HtS~~h~WFq~~~~~~~~s~y~d~fi~~~~~w~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~w~tF~~~QpDLN~ 162 (470)
T TIGR03852 83 HISRQSEYYQDFLEKKDNSKYKDLFIRYKDFWPNGRPTQEDVDLIYKRKDRAPYQEVTFADGSTEKVWNTFGEEQIDLDV 162 (470)
T ss_pred ccccchHHHHHHHhcCCCCCccceEEecccccCCCCccccccccccCCCCCCCCCceEEcCCCCeEEEccCCccccccCC
Confidence 9999986543211 11 1112333 0 0 0 0 0 01122 3489999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCccEEEEecCCcccccccCccccccCCcccccCcccC--hhHHHHHHHHHHHhhccCCCE
Q 003474 430 GSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATD--VDAVVYLMLVNDMIHGLYPEA 507 (817)
Q Consensus 430 ~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~--~~a~~fl~~~~~~v~~~~P~~ 507 (817)
.||+|+++|.++++||++ .||||||+|||.++.+. ....+.+ .+++++|+++++.+ ..|++
T Consensus 163 ~np~v~e~i~~il~fwl~-~GvdgfRLDAv~~l~K~--------------~Gt~c~~l~pet~~~l~~~r~~~--~~~~~ 225 (470)
T TIGR03852 163 TSETTKRFIRDNLENLAE-HGASIIRLDAFAYAVKK--------------LGTNDFFVEPEIWELLDEVRDIL--APTGA 225 (470)
T ss_pred CCHHHHHHHHHHHHHHHH-cCCCEEEEecchhhccc--------------CCCCcccCChhHHHHHHHHHHHh--ccCCC
Confidence 999999999999999997 89999999999998654 1122322 57889999999988 45799
Q ss_pred EEEEecCCCCCCcccccccCCcccchhhhHHHHHHHHHHHhhcchhhhhhhhHHhhccCcccccceecccCccccccCcc
Q 003474 508 VSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDK 587 (817)
Q Consensus 508 ~~IgE~~~~~p~~~~~~~~gglgFD~~l~~~~~d~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~v~y~esHD~~r~g~~ 587 (817)
++|+|.+........--.++.+.|+|.+...+...+...-......|.+ . .+..++||+.|||...+.+-
T Consensus 226 ~ll~E~~~~~~~~~~~gde~~mvY~F~lppl~l~al~~~~~~~l~~wl~--------~--~p~~~~nfL~sHDgigl~~~ 295 (470)
T TIGR03852 226 EILPEIHEHYTIQFKIAEHGYYVYDFALPMLVLYSLYSGKTNRLADWLR--------K--SPMKQFTTLDTHDGIGVVDV 295 (470)
T ss_pred EEEeHhhhhcccccccccceeEEccCccchhhHHHhhccCHHHHHHHHH--------h--CcccceEEeecCCCCCCccc
Confidence 9999997433221110123457788887666532221111111222222 1 12234699999999755210
Q ss_pred chhhhccCh----hHHhhhh----------cCC-CCC-----------hhhhHHHHHHHHHHHHHHhCCCCceEeecccc
Q 003474 588 TIAFWLMDK----DMYDFMA----------LDR-PST-----------PRIDRGIALHKMIRLVTMGLGGEAYLNFMGNE 641 (817)
Q Consensus 588 t~~~~~~~~----~~~~~~~----------~~~-~~~-----------~~~~~~~al~kla~~l~ltlpG~p~l~y~G~E 641 (817)
. -++.. .++..|. ... .++ +......++..+|++++|++||+|.| |||.|
T Consensus 296 ~---glL~~~ei~~l~~~~~~~g~~~s~~~~~~~~~~~~~Y~in~t~~~aL~~~~~r~~~a~ai~~~lpGiP~i-Yy~~l 371 (470)
T TIGR03852 296 K---DLLTDEEIDYTSEELYKVGANVKKIYSTAAYNNLDIYQINCTYYSALGDDDQAYLLARAIQFFAPGIPQV-YYVGL 371 (470)
T ss_pred c---ccCCHHHHHHHHHHHHhcCCCccccccccccCCcCceeeehhhHHHhCCCHHHHHHHHHHHHcCCCCceE-Eechh
Confidence 0 01222 1222222 000 000 01112235677899999999999988 99999
Q ss_pred cCCCCCCCCCCCCCCCCCCCcCCCCCCCCcccccccCCCccccccchHHHHHHHHHHHHHHHhCCCCC-CcEEEeeecCC
Q 003474 642 FGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTS-EHQYVSRKDEG 720 (817)
Q Consensus 642 ~G~~e~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LR~~~~~l~~-g~~~i~~~~~~ 720 (817)
+|+.+..+.+. -.+..++-+|..++...........+.+-..+||++|+++|++.- |.+.+ ...+
T Consensus 372 lg~~nD~~~~~------------rt~~~R~Inr~~~~~~~i~~~l~~~v~~~L~~li~~R~~~~aF~~~g~~~~--~~~~ 437 (470)
T TIGR03852 372 LAGKNDIELLE------------ETKEGRNINRHYYTLEEIAEEVKRPVVAKLLNLLRFRNTSKAFDLDGSIDI--ETPS 437 (470)
T ss_pred hcCCchHHHHH------------hcCCCCCCCCCCCCHHHHHHHHhhHHHHHHHHHHHHHhhCcccCCCCceEe--cCCC
Confidence 99987433222 122345566666666654432333455555559999999999864 54443 3556
Q ss_pred CcEEEEEc------CcEEEEEEcCC
Q 003474 721 DRVIVFER------GNLVFVFNFHW 739 (817)
Q Consensus 721 ~~Vlaf~R------~~llvV~Nf~~ 739 (817)
+.|++|.| +.+++++|++.
T Consensus 438 ~~~~~~~r~~~~~~~~~~~~~n~~~ 462 (470)
T TIGR03852 438 ENQIEIVRTNKDGGNKAILTANLKT 462 (470)
T ss_pred CcEEEEEEEcCCCCceEEEEEecCC
Confidence 78999998 35899999994
No 32
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=100.00 E-value=1.7e-37 Score=351.05 Aligned_cols=468 Identities=13% Similarity=0.119 Sum_probs=297.1
Q ss_pred CCceEEEeecCCCCCCCCCCCHHhhHh-hhhhHHHHcCCCEEEEcCcccC---------CCCCCCCCccccccCCCCCCC
Q 003474 295 KSLRIYEAHVGMSSTEPIINTYANFRD-DVLPRIKRLGYNAVQIMAVQEH---------SYYASFGYHVTNFFAPSSRCG 364 (817)
Q Consensus 295 ~~~~IYE~hv~~~~~~~~~G~~~~~~~-~~L~ylk~LGv~~I~LmPi~e~---------~~~~s~GY~v~dy~avd~~~G 364 (817)
...+=+.+++.+....++..-+..+.+ ...+||++|||++|||+|++++ |. ...||+++| |.|+|+||
T Consensus 50 ~a~~W~~~~P~s~i~~~~~s~~~~L~~~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~-~D~gyDi~d-~~Idp~~G 127 (688)
T TIGR02455 50 IASVWFTAYPAAIIAPEGCSVLEALADDALWKALSEIGVQGIHNGPIKLSGGIRGREFTPS-IDGNFDRIS-FDIDPLLG 127 (688)
T ss_pred hcCeeEEecchhhcCCCCCcHHHHhcChHHHHHHHHhCCCEEEeCcceecccccccCCCCC-CCCCCCccc-CccCcccC
Confidence 345667778887765555444444443 5789999999999999999999 65 357999999 59999999
Q ss_pred CHHHHHHHHHHHHHcCcEEEEeeeccccCCCccccCcCC-CCCCCCcc--------------------------------
Q 003474 365 TPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMF-DGTDGHYF-------------------------------- 411 (817)
Q Consensus 365 t~edlk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~l~~f-dg~~~~yf-------------------------------- 411 (817)
|.+||++||++||++||+||+|+|+||||..|..-+..- ++..+.||
T Consensus 128 T~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~ghdF~lAr~~~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~~ 207 (688)
T TIGR02455 128 SEEELIQLSRMAAAHNAITIDDIIPAHTGKGADFRLAELAHGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCDE 207 (688)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcchHHHhhcCCCCCCceeeccccccccccCCCCCcccccccccHHHHHH
Confidence 999999999999999999999999999999884111100 11112222
Q ss_pred -----------------ccCCCCCcccCC----------------------CCCCCCCCHH--HHHHHH-HHHHHHHHhC
Q 003474 412 -----------------HSGSRGYHWMWD----------------------SRLFNYGSWE--VLRFLL-SNARWWLEEY 449 (817)
Q Consensus 412 -----------------~~~~~g~~~~w~----------------------~~~ln~~~pe--V~~~l~-~~l~~Wl~e~ 449 (817)
..+-+...|.|+ .|+|||.||. ||+.|+ +++++|++ .
T Consensus 208 L~~~g~i~~~l~rviF~~pg~e~s~Wt~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~~-l 286 (688)
T TIGR02455 208 LKAKHYIVGQLQRVIFFEPGIKDTDWSATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAIDC-L 286 (688)
T ss_pred HhhccCcccccccceecCCCcccCCceecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHHHHH-h
Confidence 111122345554 3899999999 999999 89999999 8
Q ss_pred CccEEEEecCCcccccccCccccccCCcccccCccc-ChhHHHHHHHHHHHhh--ccCCCEEEEEecCCCCCCccccccc
Q 003474 450 KFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFAT-DVDAVVYLMLVNDMIH--GLYPEAVSIGEDVSGMPTFCIPVQD 526 (817)
Q Consensus 450 gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~-~~~a~~fl~~~~~~v~--~~~P~~~~IgE~~~~~p~~~~~~~~ 526 (817)
|+||||+|++.+|.... +. .++ ..+++.|++.+|+.|. ..+|+.++++|..- +|...+.+..
T Consensus 287 G~~GfRLDAvpfLg~e~-~~-------------~~~~~~e~h~ll~~~r~~l~~~~r~~Gg~ll~E~nl-~~~d~~~~~g 351 (688)
T TIGR02455 287 GARGLRLDANGFLGVER-RA-------------EGTAWSEGHPLSLTGNQLIAGAIRKAGGFSFQELNL-TIDDIAAMSH 351 (688)
T ss_pred ccccceeccccceeeec-CC-------------CCCCCCccCHHHHHHHHHHHHhhhcCCeeEeeeccC-CHHHHHHHhC
Confidence 99999999999885431 11 011 1345679999999998 78899999999975 4555555555
Q ss_pred CC--cccchhhhHHHHHHHHHHHhhcchhhhhhhhHHhhccCc-ccccceecccCccccccCccchhhh-----------
Q 003474 527 GG--VGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMTNRR-WLEKCVAYAESHDQALVGDKTIAFW----------- 592 (817)
Q Consensus 527 gg--lgFD~~l~~~~~d~~~~~l~~~~~~~~~~~l~~~l~~~~-~~~~~v~y~esHD~~r~g~~t~~~~----------- 592 (817)
++ |.|||..+-.+ ...|...+...... ++....... -+.+.+.++.|||+..+. .+.+|
T Consensus 352 ~~~dl~~dF~t~p~~----~~AL~tgda~pLr~-~L~~~~~~gid~~~~~~~LrNHDELtle--lvh~~~~~~~~~~~~~ 424 (688)
T TIGR02455 352 GGADLSYDFITRPAY----HHALLTGDTEFLRL-MLKEMHAFGIDPASLIHALQNHDELTLE--LVHFWTLHAHDHYHYK 424 (688)
T ss_pred CCcceeecccccHHH----HHHHHcCCHHHHHH-HHHhhhcCCCCchhhhhhccCccccchh--hhhhcccccccccccc
Confidence 44 45666543333 22233222222211 122222222 334557899999996442 11111
Q ss_pred -----------ccChhHHhhhhcCCC---------------------------CChhhhHHHHHHHHHHHHHHh----CC
Q 003474 593 -----------LMDKDMYDFMALDRP---------------------------STPRIDRGIALHKMIRLVTMG----LG 630 (817)
Q Consensus 593 -----------~~~~~~~~~~~~~~~---------------------------~~~~~~~~~al~kla~~l~lt----lp 630 (817)
.+-..||..++.+.. -.+..+...+..+++.+++++ +|
T Consensus 425 g~~~~g~~l~e~~R~~m~~~~a~d~~p~~m~~~~~gi~~t~a~~ia~~~GIRrLap~~~~d~~~I~~~h~LL~s~na~lP 504 (688)
T TIGR02455 425 GQTLPGGHLREHIREEIYERLSGEHAPYNLKFVTNGIACTTASLIAAALGIRDLDAIGPADIELIKKLHILLVMFNAMQP 504 (688)
T ss_pred cccCCccccCHHHHHHHHHHhcCCCccccceEEeccccccchhhhhhhcCCccchhhCCCCHHHHHHHHHHHHHhhccCC
Confidence 123456766666431 113334445667888999999 99
Q ss_pred CCceEeecc--------------cccCCCCCCCCCCCCCCCCCCCcCCCCCCC--C-cccccccCCCccccccchHHHHH
Q 003474 631 GEAYLNFMG--------------NEFGHPEWIDFPRGDQRLPNGQFVPGNNFS--Y-DKCRRRFDLGDADYLRYRGMQEF 693 (817)
Q Consensus 631 G~p~l~y~G--------------~E~G~~e~~d~p~~~~~~~~~~~~~gn~~s--~-~~~r~~~~w~~~~~~~~~~l~~f 693 (817)
|+|+| ||| +|+|+.+..-.++..-.+.... ++...| + -..+..+.=...+.....++.+.
T Consensus 505 G~p~L-~ygdl~GalpL~~~~v~deigmGD~~wl~rggfs~~~~~--p~~~~s~~~lP~~~~~Ygnv~~Ql~dp~S~l~~ 581 (688)
T TIGR02455 505 GVFAL-SGWDLVGALPLAAEAVAELMGDGDTRWIHRGGYDLADLA--PEAEASAEGLPKARALYGSLAEQLDEPDSFACK 581 (688)
T ss_pred CceEe-ecccccccccccccchhhhhccCccccccCCCcccCCCC--chhhhccCCCCCCcCCCCCHHHHhhCCccHHHH
Confidence 99877 999 9999954322232110000000 000000 0 00111111111223455699999
Q ss_pred HHHHHHHHHHhCCCCCCcEEEeeecCCCcEEEEEc------CcEEEEEEcCCCCcccceEEcccCCCceEEEEcCCCCCc
Q 003474 694 DRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFER------GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLF 767 (817)
Q Consensus 694 ~r~Li~LR~~~~~l~~g~~~i~~~~~~~~Vlaf~R------~~llvV~Nf~~~~~~~~~~i~v~~~g~~~~vl~sd~~~~ 767 (817)
.++|++.|+++++...+.. ......+..|+++.| +.+|+|.||+.......+.++...+|...++++....
T Consensus 582 l~~il~vR~~~~i~~~~~~-~~~~~~~~gvLa~v~~l~~~~~~~L~v~Nfs~~~~~~~l~l~~~~~~~~~dl~~~~~~-- 658 (688)
T TIGR02455 582 LKKILAVRQAYDIAASKQI-LIPDVQAPGLLVMVHELPAGKGIQITALNFGADAIAEEICLPGFAPGPVVDIIHESVE-- 658 (688)
T ss_pred HHHHHHHHHhCCcccCcee-eecCCCCCcEEEEEEEcCCCCceEEEeeccCCCCeeeEEeccccCCCCceeccCCCcc--
Confidence 9999999999998877743 334456678999988 2499999999533333344433345566666653221
Q ss_pred CCccccCCCcceeccccccCCCCeEEEEEEcCceEEEEEEeCC
Q 003474 768 GGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYALADE 810 (817)
Q Consensus 768 gG~~~~~~~~~~~~~~~~~~~~~~~i~l~lpp~s~~Vl~~~~~ 810 (817)
+ . -...+++.|+|+|++..+|..+..
T Consensus 659 ~---~--------------~~~~~~~~i~L~~y~~~wl~~~~~ 684 (688)
T TIGR02455 659 G---D--------------LTDDCELMINLDPYEALALRIVNA 684 (688)
T ss_pred C---C--------------cCCCceeEEEecCcceEEEEeccc
Confidence 0 0 012235889999999999987654
No 33
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.6e-38 Score=367.51 Aligned_cols=402 Identities=21% Similarity=0.265 Sum_probs=248.4
Q ss_pred ceEEEeecCCCCCC--------CCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHH
Q 003474 297 LRIYEAHVGMSSTE--------PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDD 368 (817)
Q Consensus 297 ~~IYE~hv~~~~~~--------~~~G~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~ed 368 (817)
.+||++.+++|... .+.||++||+ ++|||||+|||++|||+||++++. .+|||++.||+.++|.|||.+|
T Consensus 1 ~viyqi~~~~f~d~~~~~~~~~~G~Gdl~Gi~-~~LdYl~~LGv~aiwl~Pi~~s~~-~~~gY~~~Dy~~id~~~Gt~~d 78 (505)
T COG0366 1 AVIYQIYPDRFADSNGSNGPDYDGGGDLKGIT-EKLDYLKELGVDAIWLSPIFESPQ-ADHGYDVSDYTKVDPHFGTEED 78 (505)
T ss_pred CcEEEEechhhcCCCCCCccCCCCcccHHhHH-HhhhHHHHhCCCEEEeCCCCCCCc-cCCCccccchhhcCcccCCHHH
Confidence 47999999998654 3469999999 799999999999999999999863 6799999999999999999999
Q ss_pred HHHHHHHHHHcCcEEEEeeeccccCCCccccCcCC-CCC--C-CCcccc---------------CCCCCccc---C----
Q 003474 369 LKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMF-DGT--D-GHYFHS---------------GSRGYHWM---W---- 422 (817)
Q Consensus 369 lk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~l~~f-dg~--~-~~yf~~---------------~~~g~~~~---w---- 422 (817)
|++||++||++||+||||+|+||++..|.+..... .+. . ..||.. ...+..|. +
T Consensus 79 ~~~li~~~H~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (505)
T COG0366 79 FKELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPDGTPPNNWFSVFGGDAWTWGNTGEYY 158 (505)
T ss_pred HHHHHHHHHHCCCEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCcccCCCCCcchhhcCCCCCCcCCCCceE
Confidence 99999999999999999999999999984332111 111 0 122221 11122222 1
Q ss_pred ------CCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCcccccccCccccccCCcccccCcccChhHHHHHHHH
Q 003474 423 ------DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLV 496 (817)
Q Consensus 423 ------~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~ 496 (817)
..++||+.|++|++.++++++||++ +||||||+|++++|.... +.+ ...+ .........++++..
T Consensus 159 ~~~~~~~~~dln~~n~~v~~~~~~~~~~W~~-~gvDGfRlDa~~~~~~~~-~~~-----~~~~--~~~~~~~~~~~~~~~ 229 (505)
T COG0366 159 LHLFSSEQPDLNWENPEVREELLDVVKFWLD-KGVDGFRLDAAKHISKDF-GLP-----PSEE--NLTFLEEIHEYLREE 229 (505)
T ss_pred EEecCCCCCCcCCCCHHHHHHHHHHHHHHHH-cCCCeEEeccHhhhcccc-CCC-----Cccc--ccccHHHHHHHHHHH
Confidence 1267999999999999999999999 999999999999985431 100 0000 000011122444555
Q ss_pred HHHhhccCCCEEEEEecCCCCCCcccccccC-----CcccchhhhHHHH----HHHHHHHhhcchhhhhhhhHHhhccCc
Q 003474 497 NDMIHGLYPEAVSIGEDVSGMPTFCIPVQDG-----GVGFDYRLQMAIA----DKWIELLKKRDEDWKMGAIVHTMTNRR 567 (817)
Q Consensus 497 ~~~v~~~~P~~~~IgE~~~~~p~~~~~~~~g-----glgFD~~l~~~~~----d~~~~~l~~~~~~~~~~~l~~~l~~~~ 567 (817)
+..+.......+..++........+...... .+.|++.....-. ......++.....|... ......
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 305 (505)
T COG0366 230 NPDVLIYGEAITDVGEAPGAVKEDFADNTSFTNPELSMLFDFSHVGLDFEALAPLDAEELKEILADWPLA----VNLNDG 305 (505)
T ss_pred HHHHHhcCcceeeeeccccccchhhhhccchhhhhHhhccccccccccccccCcccHHHHHHHHHHHHhh----hccccC
Confidence 4444433234444554443322222221000 0111111100000 00000011000111000 000122
Q ss_pred ccccceecccCccccccCccchhhhccChhHHhhhhcCCCCChhhhHHHHHHHHHHHHHHhCCCCceEeecccccCCCCC
Q 003474 568 WLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEW 647 (817)
Q Consensus 568 ~~~~~v~y~esHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~kla~~l~ltlpG~p~l~y~G~E~G~~e~ 647 (817)
|. ..|..|||+.|+-+... .+. . ...+..+++..++++++|+|+| |||+|+|+.+.
T Consensus 306 ~~---~~~~~~hD~~r~~~~~~----~~~----------~------~~~~~~~~~~~~~~~~~g~p~i-y~G~e~g~~~~ 361 (505)
T COG0366 306 WN---NLFLSNHDQPRLLSRFG----DDV----------G------GRDASAKLLAALLFLLPGTPFI-YYGDELGLTNF 361 (505)
T ss_pred ch---hhhhhhcCccceeeecc----CCc----------c------chHHHHHHHHHHHHhCCCCcEE-ecccccCCCCC
Confidence 22 24789999998754321 010 0 0135667888899999999988 99999999765
Q ss_pred CCCCCCCCCCCCCCcCCCCCCCCcccccccCCC---------------------------cccc--ccchHHHHHHHHHH
Q 003474 648 IDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLG---------------------------DADY--LRYRGMQEFDRAMQ 698 (817)
Q Consensus 648 ~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~---------------------------~~~~--~~~~~l~~f~r~Li 698 (817)
.+.+........ .......+++.||.+|.|. .... ....+++.++++|+
T Consensus 362 ~~~~~~~~~~~~--~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~~~~~~l~ 439 (505)
T COG0366 362 KDPPIKYYDDVE--LDSIILLSRDGCRTPMPWDENGLNAGFTGGKPWLSVNPNDLLGINVEAQLADELPESLFNFYRRLI 439 (505)
T ss_pred CCcchhhhchhh--hhhhhhccccCCCCCcCCCCCCCCCCccCCCcCcccChhhhhhhhHHHHhcccCcccHHHHHHHHH
Confidence 433211000000 0112344566788888887 1111 11448999999999
Q ss_pred HHHHHh-CCCCCCcEEEeeecCCCcEEEEEcC----cEEEEEEcCC
Q 003474 699 HLEEKY-GFMTSEHQYVSRKDEGDRVIVFERG----NLVFVFNFHW 739 (817)
Q Consensus 699 ~LR~~~-~~l~~g~~~i~~~~~~~~Vlaf~R~----~llvV~Nf~~ 739 (817)
++|+.+ ..+..|...+........+++|.|. .+++++|++.
T Consensus 440 ~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~ 485 (505)
T COG0366 440 ALRKQHSALLANGEDFVLLADDDPSLLAFLRESGGETLLVVNNLSE 485 (505)
T ss_pred HHHHhhhhhhcCcccceecCCCCceEEEEecccCCceEEEEEcCCC
Confidence 999988 5556664555555666679999993 3899999994
No 34
>PLN02784 alpha-amylase
Probab=100.00 E-value=1.1e-36 Score=354.65 Aligned_cols=327 Identities=19% Similarity=0.257 Sum_probs=216.5
Q ss_pred ceEEEeecCCCCCC-CCCCC-HHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHH
Q 003474 297 LRIYEAHVGMSSTE-PIINT-YANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLID 374 (817)
Q Consensus 297 ~~IYE~hv~~~~~~-~~~G~-~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~ 374 (817)
...||+.+..|-.+ .+-|. |++|+ ++||||++||||+|||+|++++.. ++||++.|||.++++|||.+|||+||+
T Consensus 499 ~~~~eVmlQgF~Wds~~dg~w~~~I~-ekldyL~~LG~taIWLpP~~~s~s--~~GY~p~D~y~lds~yGT~~ELk~LI~ 575 (894)
T PLN02784 499 GSGFEILCQGFNWESHKSGRWYMELG-EKAAELSSLGFTVVWLPPPTESVS--PEGYMPKDLYNLNSRYGTIDELKDLVK 575 (894)
T ss_pred cCCceEEEEeEEcCcCCCCchHHHHH-HHHHHHHHhCCCEEEeCCCCCCCC--CCCcCcccccccCcCcCCHHHHHHHHH
Confidence 45777777776532 22233 68888 799999999999999999998764 699999999999999999999999999
Q ss_pred HHHHcCcEEEEeeeccccCCCccc--c-CcCCCCCC----------CCccccCCCCCcc----cCCCCCCCCCCHHHHHH
Q 003474 375 KAHELGLLVLMDIVHSHASNNVLD--G-LNMFDGTD----------GHYFHSGSRGYHW----MWDSRLFNYGSWEVLRF 437 (817)
Q Consensus 375 ~aH~~GI~VIlDvV~NH~s~~~~~--~-l~~fdg~~----------~~yf~~~~~g~~~----~w~~~~ln~~~peV~~~ 437 (817)
+||++||+||+|+|+||++..+.. + .+.|.+.. ...|. .++..+ ..+.++||+.||+||+.
T Consensus 576 a~H~~GIkVIlDiViNH~ag~f~~~~g~~~~f~g~~dW~d~~i~~ddp~F~--GrG~~~sgddf~~lPDLDh~npeVR~e 653 (894)
T PLN02784 576 SFHEVGIKVLGDAVLNHRCAHFQNQNGVWNIFGGRLNWDDRAVVADDPHFQ--GRGNKSSGDNFHAAPNIDHSQDFVRKD 653 (894)
T ss_pred HHHHCCCEEEEEECcccccccccCCCCcccccCCeecCCCCcccCCCcccC--CcCCcCcccccCcCCcCCCCCHHHHHH
Confidence 999999999999999999864311 1 11122110 00111 011111 12348999999999999
Q ss_pred HHHHHHHHHHhCCccEEEEecCCcccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCEEEEEecCCCC
Q 003474 438 LLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGM 517 (817)
Q Consensus 438 l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~~~v~~~~P~~~~IgE~~~~~ 517 (817)
|.+.++||++++||||||||+|+++.. .|++++ +++..| .++|||.|++.
T Consensus 654 L~~WlkWL~~e~G~DGfRLDaVKgf~~--------------------------~Fvkey---v~a~kp-~F~VGEyWd~~ 703 (894)
T PLN02784 654 LKEWLCWMRKEVGYDGWRLDFVRGFWG--------------------------GYVKDY---MEASEP-YFAVGEYWDSL 703 (894)
T ss_pred HHHHHHHHHhccCCCEEEEeccCCCCH--------------------------HHHHHH---HhccCC-cEEEEEecccc
Confidence 999999999899999999999986521 244444 333445 79999999873
Q ss_pred CC--------------ccccccc--CC--cccchhhhHHHHHHHHHHHhhcchhhhhhhhHHh--hccCcccccceeccc
Q 003474 518 PT--------------FCIPVQD--GG--VGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHT--MTNRRWLEKCVAYAE 577 (817)
Q Consensus 518 p~--------------~~~~~~~--gg--lgFD~~l~~~~~d~~~~~l~~~~~~~~~~~l~~~--l~~~~~~~~~v~y~e 577 (817)
.. .+..+.. ++ ..|||.+...+.+.+- ..+.|.+...... -.-..|+.++|+|++
T Consensus 704 ~~~~g~~~Ynqd~~rq~l~dwi~~tgg~~saFDfplk~~L~~A~~-----~~e~wrL~d~~g~~~glv~~~P~~AVTFVD 778 (894)
T PLN02784 704 SYTYGEMDYNQDAHRQRIVDWINATNGTAGAFDVTTKGILHSALE-----RCEYWRLSDQKGKPPGVVGWWPSRAVTFIE 778 (894)
T ss_pred ccccCccccCchhHHHHHHHHHHhCCCceeeechhHHHHHHHHHh-----ccchhhhhhccCCCCCeeccccCceEEEec
Confidence 21 1112221 11 2488887766644331 2334444332210 012357889999999
Q ss_pred CccccccCccchhhhccChhHHhhhhcCCCCChhhhHHHHHHHHHHHHHHhCCCCceEeecccccCCCCCCCCCCCCCCC
Q 003474 578 SHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRL 657 (817)
Q Consensus 578 sHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~kla~~l~ltlpG~p~l~y~G~E~G~~e~~d~p~~~~~~ 657 (817)
|||+.+... .|..+. ....++++++||+||+||| |||+=+|.
T Consensus 779 NHDTg~~Q~----~w~~p~--------------------~k~~~AYAyILthpG~PcV-Fy~h~y~~------------- 820 (894)
T PLN02784 779 NHDTGSTQG----HWRFPE--------------------GKEMQGYAYILTHPGTPAV-FYDHIFSH------------- 820 (894)
T ss_pred CCCCCCCcc----cCCCCc--------------------cchhhHHHHHHcCCCcceE-Eehhhhhh-------------
Confidence 999965311 122111 1224578999999999999 88765421
Q ss_pred CCCCcCCCCCCCCcccccccCCCccccccchHHHHHHHHHHHHHHHhCCCCCCcEEEeeecCCCcEEE-EEcCcEEEEE
Q 003474 658 PNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIV-FERGNLVFVF 735 (817)
Q Consensus 658 ~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LR~~~~~l~~g~~~i~~~~~~~~Vla-f~R~~llvV~ 735 (817)
+.+-+++|+.+|+....-..+.-.+. ..+.++++ -..+.++|-+
T Consensus 821 --------------------------------~~~~I~~Li~iRk~~gI~~~S~v~i~--~a~~~~Y~a~i~~k~~~ki 865 (894)
T PLN02784 821 --------------------------------YHPEIASLISLRNRQKIHCRSEVKIT--KAERDVYAAIIDEKVAMKI 865 (894)
T ss_pred --------------------------------hHHHHHHHHHHHHHcCCCCCCceeEE--EecCCcEEEEeCCeeEEEE
Confidence 12238999999999987766643332 22333444 3345665555
No 35
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-34 Score=334.72 Aligned_cols=167 Identities=27% Similarity=0.377 Sum_probs=136.2
Q ss_pred CCCceEEEeecCCCCCC--CCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHH
Q 003474 294 PKSLRIYEAHVGMSSTE--PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKS 371 (817)
Q Consensus 294 ~~~~~IYE~hv~~~~~~--~~~G~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~ 371 (817)
.+..+|||+.+++|..+ .+.|+++|++ ++|+|||+||+|+|||+||++++. +.+||++.||+.++|+|||.+||++
T Consensus 15 W~~~~~YQI~~~sF~~s~~d~~G~~~GI~-~kldyi~~lG~taiWisP~~~s~~-~~~GY~~~d~~~l~p~fGt~edf~~ 92 (545)
T KOG0471|consen 15 WKTESIYQIYPDSFADSDGDGVGDLKGIT-SKLDYIKELGFTAIWLSPFTKSSK-PDFGYDASDLEQLRPRFGTEEDFKE 92 (545)
T ss_pred hhcCceeEEeccccccccCCCccccccch-hhhhHHHhcCCceEEeCCCcCCCH-HHhccCccchhhhcccccHHHHHHH
Confidence 35788999999999754 5679999999 799999999999999999999886 4799999999999999999999999
Q ss_pred HHHHHHHcCcEEEEeeeccccCCCccccCcCCCCCCC---------------------CccccCCCCCcccC--------
Q 003474 372 LIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDG---------------------HYFHSGSRGYHWMW-------- 422 (817)
Q Consensus 372 LV~~aH~~GI~VIlDvV~NH~s~~~~~~l~~fdg~~~---------------------~yf~~~~~g~~~~w-------- 422 (817)
||+++|++||++|+|+|+||++..+.++......... ..+.....+..|.|
T Consensus 93 Li~~~h~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~~~~~e~~~~~~ 172 (545)
T KOG0471|consen 93 LILAMHKLGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSAWPFDEGRQKYY 172 (545)
T ss_pred HHHHHhhcceEEEEeeccccCCccccccccCccccccceeeeeccCcccccccCCCCccchHhhhccccCccccccccee
Confidence 9999999999999999999999877544332211111 11111111222222
Q ss_pred ------CCCCCCCCCHHHHHHHHHHHH-HHHHhCCccEEEEecCCccc
Q 003474 423 ------DSRLFNYGSWEVLRFLLSNAR-WWLEEYKFDGFRFDGVTSMM 463 (817)
Q Consensus 423 ------~~~~ln~~~peV~~~l~~~l~-~Wl~e~gvDGfR~D~v~~m~ 463 (817)
..+++|++||+|++.|.+.++ +|++ +||||||+|+++++.
T Consensus 173 l~~~~~~~pDln~~n~~V~~~~~~~l~~~~~~-~gvdGfRiD~v~~~~ 219 (545)
T KOG0471|consen 173 LGQFAVLQPDLNYENPDVRKAIKEWLRDFWLE-KGVDGFRIDAVKGYA 219 (545)
T ss_pred ccchhhcCCCCCCCCHHHHHHHHHHHHHHHhh-cCCCeEEEEcccccc
Confidence 238999999999999999999 8888 999999999999874
No 36
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=100.00 E-value=2e-31 Score=314.18 Aligned_cols=174 Identities=22% Similarity=0.304 Sum_probs=133.5
Q ss_pred CCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeeccccC
Q 003474 314 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 393 (817)
Q Consensus 314 G~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~s 393 (817)
+||.+++ ++||||++||||+|||+||+++....+|||+++||++|+|+|||.++|++||++||++||+||||+|+||++
T Consensus 13 ~tf~~~~-~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a 91 (825)
T TIGR02401 13 FTFDDAA-ALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMA 91 (825)
T ss_pred CCHHHHH-HhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 7999999 799999999999999999999866667999999999999999999999999999999999999999999999
Q ss_pred CC---ccccCc------------CCC-----------------CCC-----------------C----CccccCC----C
Q 003474 394 NN---VLDGLN------------MFD-----------------GTD-----------------G----HYFHSGS----R 416 (817)
Q Consensus 394 ~~---~~~~l~------------~fd-----------------g~~-----------------~----~yf~~~~----~ 416 (817)
.+ +.++.. .|+ |.. . .||+... .
T Consensus 92 ~~~~~n~wf~dvl~~g~~S~y~~~Fdidw~~~~~~gkvllP~Lg~~y~~~l~~g~l~l~~d~~~~~~l~y~~~~~Pi~p~ 171 (825)
T TIGR02401 92 VHLEQNPWWWDVLKNGPSSAYAEYFDIDWDPLGGDGKLLLPILGDQYGAVLDRGEIKLRFDGDGTLALRYYDHRLPLAPG 171 (825)
T ss_pred cccccChHHHHHHHhCCCCCccCceEEeCCCCCCCCceeecccCchhhhHHhcCceeeeecCCCceeEEecCccCCcCcc
Confidence 76 211110 110 000 0 0222110 0
Q ss_pred CC-----------------------c---ccC----------------CCCCCCCCCHHHHHHHHHHHHHHHHhCCccEE
Q 003474 417 GY-----------------------H---WMW----------------DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGF 454 (817)
Q Consensus 417 g~-----------------------~---~~w----------------~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGf 454 (817)
.+ + ..| +.+.++.++|+|.+...+.+..|+++.-|||+
T Consensus 172 ty~~il~~~~~~~~~~~l~~ll~~Q~yRL~~Wr~a~~~inYRrFf~i~~L~~lr~E~~~Vf~~~h~~i~~lv~~g~vdGl 251 (825)
T TIGR02401 172 TLPELEVLEDVPGDGDALKKLLERQHYRLTWWRVAAGEINYRRFFDINDLAGVRVEDPAVFDATHRLVLELVAEGLVDGL 251 (825)
T ss_pred chhhhhhhccccCChhhHHHHHHHHHHHhhhhhccccccCcccccCccccccccCCCHHHHHHHHHHHHHHHHcCCCceE
Confidence 00 0 012 23567888999999999999999998779999
Q ss_pred EEecCCcccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCEEEEEe-cCC
Q 003474 455 RFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGE-DVS 515 (817)
Q Consensus 455 R~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~~~v~~~~P~~~~IgE-~~~ 515 (817)
|+|.+..+. ++-.||+.+++.+ .|+.+++.| .+.
T Consensus 252 RIDh~dGL~------------------------dP~~Yl~rLr~~~---~~~~yivvEKIl~ 286 (825)
T TIGR02401 252 RIDHIDGLA------------------------DPEGYLRRLRELV---GPARYLVVEKILA 286 (825)
T ss_pred EeccccccC------------------------ChHHHHHHHHHhc---CCCceEEEEEecc
Confidence 999997662 2446999998664 446788888 443
No 37
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.95 E-value=4.2e-26 Score=270.28 Aligned_cols=82 Identities=18% Similarity=0.319 Sum_probs=77.9
Q ss_pred CCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeeccccC
Q 003474 314 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 393 (817)
Q Consensus 314 G~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~s 393 (817)
++|.+++ ++||||++||||+|||+||+++...++|||+++||++|+|+|||.++|++||++||++||+||||+|+||++
T Consensus 17 ~tf~~~~-~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~ 95 (879)
T PRK14511 17 FTFDDAA-ELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHMA 95 (879)
T ss_pred CCHHHHH-HHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 7999999 799999999999999999999866678999999999999999999999999999999999999999999999
Q ss_pred CCc
Q 003474 394 NNV 396 (817)
Q Consensus 394 ~~~ 396 (817)
.++
T Consensus 96 ~~~ 98 (879)
T PRK14511 96 VGG 98 (879)
T ss_pred CcC
Confidence 764
No 38
>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=99.90 E-value=3.5e-22 Score=208.03 Aligned_cols=381 Identities=17% Similarity=0.223 Sum_probs=228.0
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEEcCcccCCC-----CCCC-CCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeee
Q 003474 315 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSY-----YASF-GYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIV 388 (817)
Q Consensus 315 ~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~-----~~s~-GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV 388 (817)
.+..|+.++-..|.--||-.||+.|++|+.. +.=| .|+|.+ |.++.|-|..+||+.||..|.+-|+|+++|+|
T Consensus 38 KW~DiA~ECE~FL~p~G~~gVQVSP~nEn~~~~~~~rPWWeRYQPvS-YKL~tRSGNE~eF~dMV~RCN~VGVRiyVDvv 116 (504)
T KOG2212|consen 38 KWVDIALECERFLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKLCTRSGNEDEFRDMVTRCNNVGVRIYVDAV 116 (504)
T ss_pred ehHHHHHHHHhhcCcCCcceeeecCcchhhhhcCCCCCceeecccce-EEeeccCCCHHHHHHHHHHhhccceEEEehhh
Confidence 3557776788889999999999999999742 2213 699999 68999999999999999999999999999999
Q ss_pred ccccCCCcccc-------------CcCCCCCCC--CccccCC-C---CCcccC------------CCCCCCCCCHHHHHH
Q 003474 389 HSHASNNVLDG-------------LNMFDGTDG--HYFHSGS-R---GYHWMW------------DSRLFNYGSWEVLRF 437 (817)
Q Consensus 389 ~NH~s~~~~~~-------------l~~fdg~~~--~yf~~~~-~---g~~~~w------------~~~~ln~~~peV~~~ 437 (817)
+||++.+..+| ...|.|.+. .-|+... + ..-..| +..+||-++.-||..
T Consensus 117 ~NHM~g~~~~G~~vGt~Gs~~~p~s~SfPGVPYs~~DFn~~kc~~~~~~i~~~Nda~~V~~C~LVGL~DL~Q~s~~Vr~K 196 (504)
T KOG2212|consen 117 INHMCGNAVSGGTVGTCGSYFNPGSRSFPGVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLVGLLDLAQGSDYVRSK 196 (504)
T ss_pred hhhhccccccCCccccccCccCCCCCCCCCCCcccccCCCcccCCCccccccccchhhhhcceEeecchhhhcchHHHHH
Confidence 99998643222 122333211 0122210 0 011112 346899999999999
Q ss_pred HHHHHHHHHHhCCccEEEEecCCcccccccCccccccCCcccccCcccChhHH-HHHHHHHHHhhccCCCEEEEEecCC-
Q 003474 438 LLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAV-VYLMLVNDMIHGLYPEAVSIGEDVS- 515 (817)
Q Consensus 438 l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a~-~fl~~~~~~v~~~~P~~~~IgE~~~- 515 (817)
|++.|.+.++ .||-|||+|+++||... |...+ .-|+.+|.-.-..+...+++-|...
T Consensus 197 ive~L~hLid-lGVAGFRvDAsKHMwp~--------------------Di~~I~~~l~nLnsD~f~s~srpfi~qEVID~ 255 (504)
T KOG2212|consen 197 IAEYLNHLID-IGVAGFRVDASKHMWPG--------------------DIKAILDKLHNLNSDWFPSGSKPFIYQEVIDL 255 (504)
T ss_pred HHHHHHHHHH-hccceeeechhhccChH--------------------HHHHHHHHHhhcccccccCCCCceehhhhhhc
Confidence 9999999999 99999999999999432 11111 1222333222222334566666542
Q ss_pred -CCCCcccccccCCcccchhhhHHHHHHH-----HHHHhhcchhhhhhhhHHhhccCcccccceecccCccccccCccch
Q 003474 516 -GMPTFCIPVQDGGVGFDYRLQMAIADKW-----IELLKKRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTI 589 (817)
Q Consensus 516 -~~p~~~~~~~~gglgFD~~l~~~~~d~~-----~~~l~~~~~~~~~~~l~~~l~~~~~~~~~v~y~esHD~~r~g~~t~ 589 (817)
+.+--+..+...|---.|++...+...+ +++|+...+.|.. ...++.++|++|||+.|-....-
T Consensus 256 GgE~v~~~dY~g~G~~TeF~f~~~ig~~~r~~~~~kyL~nwG~~wGf----------~~s~~~L~FvDNHDNQR~~gagg 325 (504)
T KOG2212|consen 256 GGEPIKSSDYFGNGRVTEFKFGAKLGTVIRKWNKMKYLKNWGEGWGF----------MPSDRALVFVDNHDNQRGHGAGG 325 (504)
T ss_pred CCceeecccccCCceeeeeechHHHHHHHhcchhHHHHHhcCCccCc----------CCCcceEEEeccCcccccCCCCc
Confidence 2222233333333224455444443222 3455544444432 22346789999999998533211
Q ss_pred hhhccChhHHhhhhcCCCCChhhhHHHHHHHHHHHHHHhCC-CCceEeecccccCCCCCCCCCCCCCCCCCCCcCCCCCC
Q 003474 590 AFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLG-GEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNF 668 (817)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~kla~~l~ltlp-G~p~l~y~G~E~G~~e~~d~p~~~~~~~~~~~~~gn~~ 668 (817)
+. -+.....++.|||.++|+++| |+|-+ ..---|-..+|...+..+..+ .....+
T Consensus 326 a~------------------VltYK~~~~YkmA~~FmLA~PyG~~RV-MSSFaF~~~D~~PP~~~~~~i-----~SP~Fn 381 (504)
T KOG2212|consen 326 AS------------------VLTYKDARLYKMAVGFMLAHPYGFTRV-MSSFAFDVNDWVPPPNNNGVI-----KSPTFN 381 (504)
T ss_pred ce------------------EEEecchhhhhhhhhhheecccCcchh-heeeeeecCCCCCCCCCCcce-----ecceeC
Confidence 10 011123468899999999999 88766 332222223332111110000 011222
Q ss_pred CCcccccccCCCccccccchHHHHHHHHHHHHHHHhCCCCCCcEEEeeecCCCcEEEEEc-CcEEEEEEcCCCCcccceE
Q 003474 669 SYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFER-GNLVFVFNFHWNSSYSDYR 747 (817)
Q Consensus 669 s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LR~~~~~l~~g~~~i~~~~~~~~Vlaf~R-~~llvV~Nf~~~~~~~~~~ 747 (817)
+...|.. -|... +-+.-++.|.++|..-. +.+...+-+.+.+-|+|.| +.=.+++|...-.-..++.
T Consensus 382 ~D~tC~~--GWvCE------HRWrqI~~Mv~FrnAV~----~t~~~~w~d~g~nqIaF~Rg~kGF~A~Nn~~~d~s~~l~ 449 (504)
T KOG2212|consen 382 PDTTCGN--GWVCE------HRWRQIRNMVNFRNAVD----GTPFTNWYDNGSNQIAFGRGNRGFIAFNNDDWDFSLTLQ 449 (504)
T ss_pred CCCcccC--ceeee------chHHHHHHHHhhhhhcC----CccccceeeCCCcEEEEecCCccEEEEeCcchhHHHHHh
Confidence 2233433 34443 23456788999987652 2222333356677999999 4567777766322233455
Q ss_pred EcccCCCceEEEEcCCC
Q 003474 748 VGCLKPGKYKIVLDSDD 764 (817)
Q Consensus 748 i~v~~~g~~~~vl~sd~ 764 (817)
.+ .++|+|+++++.+.
T Consensus 450 T~-LPAGtYCDviSG~~ 465 (504)
T KOG2212|consen 450 TG-LPAGTYCDVISGDK 465 (504)
T ss_pred cC-CCCCceeeeecccc
Confidence 55 45799999998644
No 39
>smart00642 Aamy Alpha-amylase domain.
Probab=99.87 E-value=2.3e-22 Score=199.49 Aligned_cols=93 Identities=25% Similarity=0.368 Sum_probs=84.2
Q ss_pred EeecCCCCCC--CCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCC--CCCCCccccccCCCCCCCCHHHHHHHHHHH
Q 003474 301 EAHVGMSSTE--PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYY--ASFGYHVTNFFAPSSRCGTPDDLKSLIDKA 376 (817)
Q Consensus 301 E~hv~~~~~~--~~~G~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~--~s~GY~v~dy~avd~~~Gt~edlk~LV~~a 376 (817)
|+.+.+|... .+.|+|++++ ++|+||++||||+|||+||++++.. .+|||+++||++++|+|||++||++||++|
T Consensus 1 qi~~~~F~~~~~~~~G~~~gi~-~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~ 79 (166)
T smart00642 1 QIYPDRFADGNGDGGGDLQGII-EKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAA 79 (166)
T ss_pred CeeeccccCCCCCCCcCHHHHH-HHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHH
Confidence 3556676543 4579999999 6999999999999999999998853 679999999999999999999999999999
Q ss_pred HHcCcEEEEeeeccccCC
Q 003474 377 HELGLLVLMDIVHSHASN 394 (817)
Q Consensus 377 H~~GI~VIlDvV~NH~s~ 394 (817)
|++||+||||+|+||++.
T Consensus 80 h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 80 HARGIKVILDVVINHTSD 97 (166)
T ss_pred HHCCCEEEEEECCCCCCC
Confidence 999999999999999986
No 40
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=99.85 E-value=2.5e-21 Score=175.16 Aligned_cols=96 Identities=56% Similarity=1.106 Sum_probs=88.2
Q ss_pred eCCcEEEEEecCCcCEEEEEeecCCCCCcccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCCc-cccCCccc
Q 003474 181 SDTGITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGI-KDSIPAWI 259 (817)
Q Consensus 181 ~~~gv~fr~WAP~A~~V~LvgdFN~W~~~~~pm~r~~~GvWei~lp~~~~g~~~~~~g~~yk~~~~~~~g~-~~~~~~~~ 259 (817)
..+|++||+|||+|++|+|+||||+|+...++|+|.++|+|+++||+..+|...++||+.|||+|...+|. .+++|||+
T Consensus 3 ~~~g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPyA 82 (99)
T cd02854 3 EDGGVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAWI 82 (99)
T ss_pred CCCeEEEEEECCCCCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCcce
Confidence 45689999999999999999999999998899999999999999999988988899999999999986665 58999999
Q ss_pred eeeccCCCCCCCceEEe
Q 003474 260 KFSVQAPGEIPYNGIYY 276 (817)
Q Consensus 260 ~~~~~~~~~~~~~~~~~ 276 (817)
+++++.|++..|++++|
T Consensus 83 ~~~~~~~~~~~~~~~~~ 99 (99)
T cd02854 83 KYVTQDKETALYDGVFW 99 (99)
T ss_pred eEEEeCCCCcceeeEEC
Confidence 99999999888888776
No 41
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=99.83 E-value=6.7e-19 Score=196.50 Aligned_cols=307 Identities=24% Similarity=0.337 Sum_probs=201.1
Q ss_pred ccCCcEEeCCc-EEEEEecCCcC-------EEEEEe-------ecCCCC------CcccccccCCCceEEEEeCCCCCCC
Q 003474 174 EKFGFIRSDTG-ITYREWAPGAK-------SASLIG-------DFNNWN------PNADIMTQNEFGVWEIFLPNNADGS 232 (817)
Q Consensus 174 ~~lG~~~~~~g-v~fr~WAP~A~-------~V~Lvg-------dFN~W~------~~~~pm~r~~~GvWei~lp~~~~g~ 232 (817)
..||+|+..+| +.|-.|.|.-. .|+|.. ||..-+ +...|+.+.+.-+|-+ +.+...|+
T Consensus 26 ~rLGAh~~~dGlteiGFWtPel~~~~i~~~~i~LEVftP~~~ID~~~~~q~v~f~R~~~~L~~qgey~WgV-v~GlraGt 104 (811)
T PF14872_consen 26 TRLGAHYRPDGLTEIGFWTPELAGDVIQPRDIYLEVFTPLEPIDPRAPEQTVRFRRDRLPLERQGEYHWGV-VAGLRAGT 104 (811)
T ss_pred HHhcCccCCCCceEEeeccchhhhhhccccceEEEEecCCCCCCCcCCCceeEEEEEEEeeccccceeeeh-hhccCCCC
Confidence 47999999999 89999999654 788753 332211 1224666666667743 55655555
Q ss_pred CCCCCCCEEEEEEeCCCCccc----cCCccceeeccCCCCCCCceEEeCCCc------cccccccC-------CCCCCCC
Q 003474 233 PPIPHGSRVKIHMDTPSGIKD----SIPAWIKFSVQAPGEIPYNGIYYDPPE------EEKYVFQH-------PQPKKPK 295 (817)
Q Consensus 233 ~~~~~g~~yk~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~-------~~~~~~~ 295 (817)
- ..-|+.|..+-....+... .+..-..|.+..|. -+||.+. +..|--+. .-++.+.
T Consensus 105 r-~q~GsfYwLry~d~~~~~~~I~DpLaySlPyGvfaPA------ElYDl~~lq~~RaD~~Yf~~~~a~~~~~~~~rv~~ 177 (811)
T PF14872_consen 105 R-DQAGSFYWLRYRDQDGEVQIIRDPLAYSLPYGVFAPA------ELYDLERLQRRRADLDYFEATGAADPSDGIPRVPA 177 (811)
T ss_pred c-ccccceEEEEEccCCCCeEEecccccccCcccccChH------HhhchHhHhhhhhhHHHHHhhccccCCCCCcccCC
Confidence 3 3458999998776656532 12111223333332 2455532 11111111 1134467
Q ss_pred CceEEEeecCCCCCCCCCCCHHhhHhhhhhHHHH---------------cCCCEEEEcCcccC-----------------
Q 003474 296 SLRIYEAHVGMSSTEPIINTYANFRDDVLPRIKR---------------LGYNAVQIMAVQEH----------------- 343 (817)
Q Consensus 296 ~~~IYE~hv~~~~~~~~~G~~~~~~~~~L~ylk~---------------LGv~~I~LmPi~e~----------------- 343 (817)
+..|-|+||+..|++ ||+.|++ +.-..|.+ .||++||||||-..
T Consensus 178 P~nILQiHv~TAsp~---GtlaGLT-~iyqria~K~~~g~pLtp~E~ny~GYDAvQLLPiEPtieyr~e~~~~h~Ff~~~ 253 (811)
T PF14872_consen 178 PRNILQIHVGTASPE---GTLAGLT-RIYQRIADKLAAGEPLTPAEENYVGYDAVQLLPIEPTIEYRAENEPGHEFFSIR 253 (811)
T ss_pred CceeEEEecCCCCCC---cchHHHH-HHHHHHHHHHhcCCCCChhHHhcccccceeeeccCCcceeccccCCCCceeeec
Confidence 889999999999887 8999988 34444432 89999999998642
Q ss_pred --------------------------CCCCCCCCccccc--cCCCCC-CCC--HHHHHHHHHHHHH---cCcEEEEeeec
Q 003474 344 --------------------------SYYASFGYHVTNF--FAPSSR-CGT--PDDLKSLIDKAHE---LGLLVLMDIVH 389 (817)
Q Consensus 344 --------------------------~~~~s~GY~v~dy--~avd~~-~Gt--~edlk~LV~~aH~---~GI~VIlDvV~ 389 (817)
|...+|||++.=+ -+++|. ++| |+||-.||.++|. ..|.||+|+|+
T Consensus 254 ~~d~~~~~~~~~~~~~~~~v~v~L~kPdtqNWGYDv~I~GsaAtNPalL~TlRPDElVdfiatLHnFp~gPIqvIyDlVy 333 (811)
T PF14872_consen 254 PEDEDELDPETEGVHEDGDVTVTLRKPDTQNWGYDVVILGSAATNPALLETLRPDELVDFIATLHNFPTGPIQVIYDLVY 333 (811)
T ss_pred ccccccccccccccccCceEEEEecCCCccccCcceeeeccCCCCHHHHhcCCcHHHHHHHHHHhcCCCCCeEEEEeeec
Confidence 1123799998532 233332 233 8999999999996 78999999999
Q ss_pred cccCCCccccCcCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCcccccccCc
Q 003474 390 SHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGL 469 (817)
Q Consensus 390 NH~s~~~~~~l~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~ 469 (817)
.|+.....+-++. .|+. ++.- + .-++|+.+|.||..|++.-+.=++ +|+||+|+|++.-.-+.
T Consensus 334 GHADNQ~~~LLn~------~flk-GPnM----Y-GQdlnhq~P~VRAILLEmQRRK~n-~GaDGIRVDGgQDFk~f---- 396 (811)
T PF14872_consen 334 GHADNQALDLLNR------RFLK-GPNM----Y-GQDLNHQNPVVRAILLEMQRRKIN-TGADGIRVDGGQDFKFF---- 396 (811)
T ss_pred ccccchhhHhhhh------hhcc-CCcc----c-cccccccChHHHHHHHHHHHhhcc-cCCceeEecccccceee----
Confidence 9998776444431 2222 1211 1 248999999999999999999999 99999999998755221
Q ss_pred cccccCCcccccCcccChhHHHHHHHHHHHhhccCC---CEEEEEecCCCCCC
Q 003474 470 QVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYP---EAVSIGEDVSGMPT 519 (817)
Q Consensus 470 ~~~f~~~~~~~~g~~~~~~a~~fl~~~~~~v~~~~P---~~~~IgE~~~~~p~ 519 (817)
+..-+..+..+ .||.++.+.+..+.+ -.++|-|+--.||.
T Consensus 397 --------nplt~~ve~DD--~YL~~M~dvvQ~I~~~~r~~f~IfEDGRPWP~ 439 (811)
T PF14872_consen 397 --------NPLTGRVEYDD--AYLLAMSDVVQEIGGARRLPFTIFEDGRPWPQ 439 (811)
T ss_pred --------cccccccccch--HHHHHHHHHHhhccccceeEEEEecCCCcCCc
Confidence 11112222222 489999999988765 36889998766663
No 42
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.75 E-value=1.8e-17 Score=208.12 Aligned_cols=92 Identities=20% Similarity=0.280 Sum_probs=82.9
Q ss_pred CceEEEeecCCCCCCCCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHH
Q 003474 296 SLRIYEAHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDK 375 (817)
Q Consensus 296 ~~~IYE~hv~~~~~~~~~G~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~ 375 (817)
+..+|-++.. ..++|.+++ ++||||++||||+||||||+++....+|||+++||++|+|+|||.++|++||++
T Consensus 743 P~atyrlq~~------~~~tf~~~~-~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ 815 (1693)
T PRK14507 743 PRATYRLQFH------KDFTFADAE-AILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAA 815 (1693)
T ss_pred cceeEEEEeC------CCCCHHHHH-HHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHH
Confidence 3447777654 248999999 799999999999999999999755567999999999999999999999999999
Q ss_pred HHHcCcEEEEeeeccccCC
Q 003474 376 AHELGLLVLMDIVHSHASN 394 (817)
Q Consensus 376 aH~~GI~VIlDvV~NH~s~ 394 (817)
||++||+||||+|+||++.
T Consensus 816 ah~~Gi~vilDiV~NH~~~ 834 (1693)
T PRK14507 816 LKAHGLGQLLDIVPNHMGV 834 (1693)
T ss_pred HHHCCCEEEEEecccccCC
Confidence 9999999999999999984
No 43
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=99.64 E-value=5.1e-14 Score=172.25 Aligned_cols=83 Identities=23% Similarity=0.396 Sum_probs=75.8
Q ss_pred CCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCC----CHHHHHHHHHHHHHc-CcEEEEe
Q 003474 312 IINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCG----TPDDLKSLIDKAHEL-GLLVLMD 386 (817)
Q Consensus 312 ~~G~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~G----t~edlk~LV~~aH~~-GI~VIlD 386 (817)
-.|+|.+.. ++|+|||+||||+||||||++-.. .++.|++.||+++||.|| +.+||++||++||++ ||+||+|
T Consensus 127 ~mG~~~~w~-~~L~~ik~lGyN~IhftPI~~~G~-SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilD 204 (1464)
T TIGR01531 127 LLGPLSEWE-PRLRVAKEKGYNMIHFTPLQELGG-SNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITD 204 (1464)
T ss_pred hcCCHHHHH-HHHHHHHHcCCCEEEeCCCccCCC-CCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 358998877 799999999999999999997554 568999999999999995 899999999999997 9999999
Q ss_pred eeccccCCCc
Q 003474 387 IVHSHASNNV 396 (817)
Q Consensus 387 vV~NH~s~~~ 396 (817)
+|+|||+.++
T Consensus 205 vV~NHTa~ds 214 (1464)
T TIGR01531 205 IVFNHTANNS 214 (1464)
T ss_pred eeecccccCC
Confidence 9999999975
No 44
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=2.2e-14 Score=163.48 Aligned_cols=80 Identities=23% Similarity=0.350 Sum_probs=75.4
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeeccccCC
Q 003474 315 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASN 394 (817)
Q Consensus 315 ~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~s~ 394 (817)
+|.... ..||||++|||.|+|++||+..-..+.|||||+|+..|+|.+|+.+.|..||.++|++||++|+|+|+||++-
T Consensus 17 tF~~A~-~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DIVPNHMav 95 (889)
T COG3280 17 TFADAR-ALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDIVPNHMAV 95 (889)
T ss_pred CHHHHH-HhhHHHHhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEecccchhc
Confidence 677776 6999999999999999999998777789999999999999999999999999999999999999999999986
Q ss_pred C
Q 003474 395 N 395 (817)
Q Consensus 395 ~ 395 (817)
.
T Consensus 96 ~ 96 (889)
T COG3280 96 G 96 (889)
T ss_pred c
Confidence 5
No 45
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=99.52 E-value=1.6e-14 Score=127.37 Aligned_cols=79 Identities=33% Similarity=0.673 Sum_probs=65.5
Q ss_pred cCCcEEeCC--cEEEEEecCCcCEEEEEeecCC-CCCcccccc-cCCCceEEEEeCCCCCCCCCCCCC-CEEEEEEeCCC
Q 003474 175 KFGFIRSDT--GITYREWAPGAKSASLIGDFNN-WNPNADIMT-QNEFGVWEIFLPNNADGSPPIPHG-SRVKIHMDTPS 249 (817)
Q Consensus 175 ~lG~~~~~~--gv~fr~WAP~A~~V~LvgdFN~-W~~~~~pm~-r~~~GvWei~lp~~~~g~~~~~~g-~~yk~~~~~~~ 249 (817)
+||+|+.++ +++||+|||+|++|+|+++|++ |....++|+ +.+.|+|+++||.. +++| .+|+|+|+...
T Consensus 1 plG~~~~~~~~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~------~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 1 PLGAHYTEDGGGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGD------LPPGGYYYKYRIDGDD 74 (85)
T ss_dssp SSEEEEESSCTEEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGC------GTTTT-EEEEEEEETT
T ss_pred CcCcEEECCCCEEEEEEECCCCCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCC------cCCCCEEEEEEEEeCC
Confidence 699999986 8999999999999999999999 888889999 68999999999953 4566 49999999887
Q ss_pred Cc-cccCCccc
Q 003474 250 GI-KDSIPAWI 259 (817)
Q Consensus 250 g~-~~~~~~~~ 259 (817)
|. ...+||||
T Consensus 75 g~~~~~~DPYA 85 (85)
T PF02922_consen 75 GETPEVVDPYA 85 (85)
T ss_dssp TEEEEET-TT-
T ss_pred CcEEEEeCCCC
Confidence 53 46778875
No 46
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.45 E-value=2.9e-13 Score=123.23 Aligned_cols=92 Identities=20% Similarity=0.334 Sum_probs=75.9
Q ss_pred CCcEEeCCcEEEEEecCCcCEEEEEeecCCCCC----cccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCC-CC
Q 003474 176 FGFIRSDTGITYREWAPGAKSASLIGDFNNWNP----NADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTP-SG 250 (817)
Q Consensus 176 lG~~~~~~gv~fr~WAP~A~~V~LvgdFN~W~~----~~~pm~r~~~GvWei~lp~~~~g~~~~~~g~~yk~~~~~~-~g 250 (817)
||+++..+|++|++|||+|++|.|++ |++|+. ..++|.+.+.|+|+++|++.. +|..|+|+++.. +.
T Consensus 1 lGa~~~~~~~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~~~gvw~~~v~~~~-------~g~~Y~y~i~~~~~~ 72 (100)
T cd02860 1 LGAVYTPEKTTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRGENGVWSVTLDGDL-------EGYYYLYEVKVYKGE 72 (100)
T ss_pred CCCEEeCCCEEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecCCCCEEEEEeCCcc-------CCcEEEEEEEEeceE
Confidence 79999999999999999999999999 888862 357999989999999999754 467999999876 33
Q ss_pred ccccCCccceeeccCCCCCCCceEEeCCC
Q 003474 251 IKDSIPAWIKFSVQAPGEIPYNGIYYDPP 279 (817)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 279 (817)
.....|||++.+..+.. +|++.|++
T Consensus 73 ~~~~~DPyA~~~~~~~~----~s~i~d~~ 97 (100)
T cd02860 73 TNEVVDPYAKALSANGE----RSVDLDDK 97 (100)
T ss_pred EEEEcCcccEeEeeCCC----ceEECChH
Confidence 45788999998766533 47888874
No 47
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=99.42 E-value=7.9e-13 Score=121.35 Aligned_cols=92 Identities=32% Similarity=0.651 Sum_probs=77.0
Q ss_pred hhcccccCCcEEeC----CcEEEEEecCCcCEEEEEeecCCCCCcccccccCC-CceEEEEeCCCCCCCCCCCCCCEEEE
Q 003474 169 FSRGYEKFGFIRSD----TGITYREWAPGAKSASLIGDFNNWNPNADIMTQNE-FGVWEIFLPNNADGSPPIPHGSRVKI 243 (817)
Q Consensus 169 f~~~y~~lG~~~~~----~gv~fr~WAP~A~~V~LvgdFN~W~~~~~pm~r~~-~GvWei~lp~~~~g~~~~~~g~~yk~ 243 (817)
++..|+.||+|..+ ++++||+|||.|++|.|+++||+|+....+|++.+ .|+|+++||.. ++|..|+|
T Consensus 3 ~~~p~~~lG~~~~~~~~~~~~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~~~~G~w~~~v~~~-------~~~~~Y~~ 75 (106)
T cd02855 3 HERLYEKLGAHPTEVDGVSGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRRRGDSGVWELFIPGL-------GEGELYKY 75 (106)
T ss_pred chhHHHhcCCEEcccCCcCCEEEEEECCCCCEEEEEEECCCCCCcceecEECCCCCEEEEEECCC-------CCCCEEEE
Confidence 45677899999988 78999999999999999999999977778999876 99999999854 34567999
Q ss_pred EEeCCCC-ccccCCccceeeccCCC
Q 003474 244 HMDTPSG-IKDSIPAWIKFSVQAPG 267 (817)
Q Consensus 244 ~~~~~~g-~~~~~~~~~~~~~~~~~ 267 (817)
++...+| ..+..|||++...+.++
T Consensus 76 ~v~~~~g~~~~~~DPYa~~~~~~~~ 100 (106)
T cd02855 76 EILGADGHLPLKADPYAFYSELRPG 100 (106)
T ss_pred EEECCCCCEEEeeCCCceeeEeCCC
Confidence 9987644 45778999988877655
No 48
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=99.35 E-value=1.5e-12 Score=117.20 Aligned_cols=89 Identities=35% Similarity=0.575 Sum_probs=72.4
Q ss_pred EEeeecCCCcEEEEEcC-----cEEEEEEcCCCCcccceEEcccCCCceEEEEcCCCCCcCCccccCCCcceeccccccC
Q 003474 713 YVSRKDEGDRVIVFERG-----NLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYD 787 (817)
Q Consensus 713 ~i~~~~~~~~Vlaf~R~-----~llvV~Nf~~~~~~~~~~i~v~~~g~~~~vl~sd~~~~gG~~~~~~~~~~~~~~~~~~ 787 (817)
|+.+.+.+++|+||.|. .+|||+||++.+.+.+|++++|.+|+|+++||||+..|||++..... .+. ..++
T Consensus 1 Wi~~~d~~~~v~af~R~~~~~~~~lvv~Nf~~~~~~~~~~~~~p~~g~y~~vlnsd~~~~~g~~~~~~~-~v~---~~~~ 76 (95)
T PF02806_consen 1 WIDHDDNENNVIAFERKDKGDDRVLVVFNFSPEAVYEDYRIGVPEAGRYKEVLNSDDEEYGGSGKGNSG-EVT---VDSN 76 (95)
T ss_dssp EEEEEEESSSEEEEEETTTETTEEEEEEESSSS-EEEEEEECSSSSEEEEETTTTTCEEEEESSCSETS-EEE---EETT
T ss_pred CcccccCCCCEEEEEEcCCCCCEEEEEEECCCcccceeEEeCCCCcceeeEEeCCCccEECCcccccCc-eEE---EeeC
Confidence 67888899999999993 39999999975478999999999999999999999999999863322 221 1223
Q ss_pred CCCeEEEEEEcCceEEEEEEe
Q 003474 788 DQPHSFLVYAPSRTAVVYALA 808 (817)
Q Consensus 788 ~~~~~i~l~lpp~s~~Vl~~~ 808 (817)
+.++|+|||++++||+.+
T Consensus 77 ---g~~~~~lp~~s~~vl~~~ 94 (95)
T PF02806_consen 77 ---GRITVTLPPYSALVLKLK 94 (95)
T ss_dssp ---SEEEEEESTTEEEEEEEE
T ss_pred ---CEEEEEECCCEEEEEEEc
Confidence 349999999999999875
No 49
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.32 E-value=5.7e-12 Score=115.41 Aligned_cols=81 Identities=20% Similarity=0.256 Sum_probs=66.1
Q ss_pred cCCcEEeCCcEEEEEecCCcCEEEEEeecCCCC-CcccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCC-----
Q 003474 175 KFGFIRSDTGITYREWAPGAKSASLIGDFNNWN-PNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTP----- 248 (817)
Q Consensus 175 ~lG~~~~~~gv~fr~WAP~A~~V~LvgdFN~W~-~~~~pm~r~~~GvWei~lp~~~~g~~~~~~g~~yk~~~~~~----- 248 (817)
+||+++.++|++|++|||+|++|.|++ |+++. ...++|++.+.|+|+++|++.. +|..|+|+|+.+
T Consensus 1 plGa~~~~~g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~GvW~~~v~~~~-------~g~~Y~y~i~g~~~p~~ 72 (103)
T cd02856 1 PLGATLDGEGCNFAVHSENATRIELCL-FDEDGSETRLPLTEEYGGVWHGFLPGIK-------AGQRYGFRVHGPYDPER 72 (103)
T ss_pred CCccEEeCCCeEEEEECCCCCEEEEEE-EeCCCCEEEEEcccccCCEEEEEECCCC-------CCCEEEEEECCccCccc
Confidence 589999999999999999999999999 77665 4567999988999999999754 467999999872
Q ss_pred ----CCccccCCccceeec
Q 003474 249 ----SGIKDSIPAWIKFSV 263 (817)
Q Consensus 249 ----~g~~~~~~~~~~~~~ 263 (817)
+.....+||||+.+.
T Consensus 73 ~~~~~~~~~~~DPYA~~~~ 91 (103)
T cd02856 73 GLRFNPAKLLLDPYARALD 91 (103)
T ss_pred CcccCCCeEEecCCcceEc
Confidence 222456788887764
No 50
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.22 E-value=6.1e-11 Score=104.66 Aligned_cols=84 Identities=24% Similarity=0.304 Sum_probs=65.6
Q ss_pred CcEEeC-CcEEEEEecCCcCEEEEEeecCCCCCcccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCCccccC
Q 003474 177 GFIRSD-TGITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGIKDSI 255 (817)
Q Consensus 177 G~~~~~-~gv~fr~WAP~A~~V~LvgdFN~W~~~~~pm~r~~~GvWei~lp~~~~g~~~~~~g~~yk~~~~~~~g~~~~~ 255 (817)
|++..+ ++++|++|||+|++|.|++. + + ...+|++.+.|+|++++++. . |..|+|++.. .....
T Consensus 1 Ga~~~~~~~~~F~vwAP~A~~V~l~l~-~-~--~~~~m~~~~~G~W~~~v~~~-~-------g~~Y~y~v~~---~~~~~ 65 (85)
T cd02853 1 GARPLGAGGTRFRLWAPDAKRVTLRLD-D-G--EEIPMQRDGDGWFEAEVPGA-A-------GTRYRYRLDD---GTPVP 65 (85)
T ss_pred CCeEcCCCCEEEEEeCCCCCEEEEEec-C-C--CcccCccCCCcEEEEEeCCC-C-------CCeEEEEECC---CcCCC
Confidence 778877 78999999999999999983 3 3 45789999999999999975 5 5689999973 25678
Q ss_pred CccceeeccCCCCCCCceEEeCC
Q 003474 256 PAWIKFSVQAPGEIPYNGIYYDP 278 (817)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~d~ 278 (817)
|||+++....... .|+++||
T Consensus 66 DP~a~~~~~~~~~---~s~v~~~ 85 (85)
T cd02853 66 DPASRFQPEGVHG---PSQVVDP 85 (85)
T ss_pred CCccccCCCCCCC---CeEeeCc
Confidence 8999875433222 4777765
No 51
>PRK05402 glycogen branching enzyme; Provisional
Probab=99.13 E-value=4.4e-11 Score=144.86 Aligned_cols=83 Identities=13% Similarity=0.125 Sum_probs=72.3
Q ss_pred hhhhcccccCCcEEeCCcEEEEEecCCcCEEEEEeecCCCCCcccccccC-CCceEEEEeCCCCCCCCCCCCCCEEEEEE
Q 003474 167 AAFSRGYEKFGFIRSDTGITYREWAPGAKSASLIGDFNNWNPNADIMTQN-EFGVWEIFLPNNADGSPPIPHGSRVKIHM 245 (817)
Q Consensus 167 ~~f~~~y~~lG~~~~~~gv~fr~WAP~A~~V~LvgdFN~W~~~~~pm~r~-~~GvWei~lp~~~~g~~~~~~g~~yk~~~ 245 (817)
+...+.|+.||+|....|++|++|||+|++|+|+||||+ +..+||++. +.|+|+++|| ... |..|||+|
T Consensus 12 g~~~~~~~~lGah~~~~g~~f~vwaP~A~~V~vvgdfn~--~~~~~m~~~~~~G~w~~~ip-~~~-------g~~YKy~i 81 (726)
T PRK05402 12 GRHHDPFSVLGPHPTGAGLVVRALLPGAEEVWVILPGGG--RKLAELERLHPRGLFAGVLP-RKG-------PFDYRLRV 81 (726)
T ss_pred CccCCHHHhcCCCCCCCcEEEEEECCCCeEEEEEeecCC--CccccceEcCCCceEEEEec-CCC-------CCCeEEEE
Confidence 467889999999998889999999999999999999995 677899974 7899999999 665 55899999
Q ss_pred eCCCCc-cccCCccce
Q 003474 246 DTPSGI-KDSIPAWIK 260 (817)
Q Consensus 246 ~~~~g~-~~~~~~~~~ 260 (817)
.+ +|. ....+||+.
T Consensus 82 ~~-~g~~~~k~DPyaf 96 (726)
T PRK05402 82 TW-GGGEQLIDDPYRF 96 (726)
T ss_pred Ee-CCceeEecccccc
Confidence 98 665 467888886
No 52
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.05 E-value=6e-10 Score=104.78 Aligned_cols=79 Identities=15% Similarity=0.219 Sum_probs=62.0
Q ss_pred CcEEeCCcEEEEEecCCcCEEEEEeecCCCCC----cccccccCC---CceEEEEeCCCCCCCCCCCCCCEEEEEEeC--
Q 003474 177 GFIRSDTGITYREWAPGAKSASLIGDFNNWNP----NADIMTQNE---FGVWEIFLPNNADGSPPIPHGSRVKIHMDT-- 247 (817)
Q Consensus 177 G~~~~~~gv~fr~WAP~A~~V~LvgdFN~W~~----~~~pm~r~~---~GvWei~lp~~~~g~~~~~~g~~yk~~~~~-- 247 (817)
|+++.++|++|++|||+|++|.|++ |++|+. ...+|.+.+ .|+|+++|++... |..|+|+|+.
T Consensus 1 Ga~~~~~g~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~-------g~~Y~y~v~g~~ 72 (119)
T cd02852 1 GATIDAGGVNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKP-------GQLYGYRVDGPF 72 (119)
T ss_pred CCeEeCCCEEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCCC-------CCEEEEEECCCC
Confidence 7888899999999999999999999 888862 245787655 6999999997654 6689999985
Q ss_pred --CCCc-c----ccCCccceeec
Q 003474 248 --PSGI-K----DSIPAWIKFSV 263 (817)
Q Consensus 248 --~~g~-~----~~~~~~~~~~~ 263 (817)
..|. . ..+|||++...
T Consensus 73 ~p~~g~~~~~~~~~~DPYA~a~~ 95 (119)
T cd02852 73 EPEQGHRFDPSKVLLDPYAKAVS 95 (119)
T ss_pred CCCcccccCCCcEEECCCcCeEc
Confidence 2232 1 26788887754
No 53
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.94 E-value=2.2e-09 Score=94.71 Aligned_cols=67 Identities=24% Similarity=0.319 Sum_probs=48.8
Q ss_pred CcEEEEEecCCcCEEEEEeecCCCCCcccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCCccccCCcccee
Q 003474 183 TGITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGIKDSIPAWIKF 261 (817)
Q Consensus 183 ~gv~fr~WAP~A~~V~LvgdFN~W~~~~~pm~r~~~GvWei~lp~~~~g~~~~~~g~~yk~~~~~~~g~~~~~~~~~~~ 261 (817)
+.++|++|||.|++|+|+|+||+| ..++|++.+.|+|+++++....|. ..|+|.++. ....||+.+.
T Consensus 6 ~~v~F~vwAP~A~~V~L~~~~~~~--~~~~m~~~~~G~W~~~v~~l~~g~------Y~Y~~~vdg----~~~~DP~s~~ 72 (85)
T cd02858 6 RTVTFRLFAPKANEVQVRGSWGGA--GSHPMTKDEAGVWSVTTGPLAPGI------YTYSFLVDG----VRVIDPSNPT 72 (85)
T ss_pred CcEEEEEECCCCCEEEEEeecCCC--ccEeCeECCCeEEEEEECCCCCcE------EEEEEEECC----eEecCCCCCc
Confidence 459999999999999999999865 457999999999999996432211 256666643 3334554443
No 54
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.93 E-value=3.1e-09 Score=93.11 Aligned_cols=55 Identities=31% Similarity=0.500 Sum_probs=46.4
Q ss_pred cEEEEEecCCcCEEEEEeecCCCCCcccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeC
Q 003474 184 GITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDT 247 (817)
Q Consensus 184 gv~fr~WAP~A~~V~LvgdFN~W~~~~~pm~r~~~GvWei~lp~~~~g~~~~~~g~~yk~~~~~ 247 (817)
.++|++|||.|++|+|+|+||+|+ ..+|++.+.|+|+++++. ..|. ..|||.++.
T Consensus 3 ~vtf~~~ap~a~~V~v~G~fn~W~--~~~m~~~~~G~w~~~~~l-~~G~------y~Ykf~vdg 57 (82)
T cd02861 3 PVVFAYRGPEADSVYLAGSFNNWN--AIPMEREGDGLWVVTVEL-RPGR------YEYKFVVDG 57 (82)
T ss_pred cEEEEEECCCCCEEEEEeECCCCC--cccCEECCCCcEEEEEeC-CCCc------EEEEEEECC
Confidence 389999999999999999999997 579999888999999973 3333 289999853
No 55
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.53 E-value=3.4e-07 Score=79.38 Aligned_cols=60 Identities=33% Similarity=0.455 Sum_probs=50.8
Q ss_pred CcEEEEEecCCcCEEEEEeecCCCCCcccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCC
Q 003474 183 TGITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPS 249 (817)
Q Consensus 183 ~gv~fr~WAP~A~~V~LvgdFN~W~~~~~pm~r~~~GvWei~lp~~~~g~~~~~~g~~yk~~~~~~~ 249 (817)
.+++|++|||.|++|.|+++||+| ...++|++.+.|+|++.|+... +++..|+|++....
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~~~-~~~~~~~~~~~g~w~~~v~~~~------~~~~~Y~~~v~~~~ 63 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFNGD-TQLIPMTKVEDGYWEVELPLPS------PGKYQYKYVLDGGK 63 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEECCC-CCcccCEECCCceEEEEEcCCC------CCCeEEEEEEeCCC
Confidence 579999999999999999999885 3568999998999999999653 24678999998653
No 56
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.52 E-value=8.9e-07 Score=97.02 Aligned_cols=188 Identities=19% Similarity=0.247 Sum_probs=102.1
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEEcCcccC-CCCCCCCCccccccCCCCCCC--CHHHHHHHHHHHHHcCcEEEEeeeccc
Q 003474 315 TYANFRDDVLPRIKRLGYNAVQIMAVQEH-SYYASFGYHVTNFFAPSSRCG--TPDDLKSLIDKAHELGLLVLMDIVHSH 391 (817)
Q Consensus 315 ~~~~~~~~~L~ylk~LGv~~I~LmPi~e~-~~~~s~GY~v~dy~avd~~~G--t~edlk~LV~~aH~~GI~VIlDvV~NH 391 (817)
+-..+. +.|+.|+++|+|+|.+-=-... ..|.| -+-+...+......+ +-|=|+.+|++||++||.|.-=+.++.
T Consensus 17 ~~~~~~-~~l~~l~~~~~N~V~~qVr~~gda~Y~S-~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~ 94 (311)
T PF02638_consen 17 SKEQID-EMLDDLKSAGFNAVFVQVRPRGDALYPS-DIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGF 94 (311)
T ss_pred CHHHHH-HHHHHHHHcCCCEEEEEEEeCcEEEecc-cccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeec
Confidence 334555 7999999999999975321111 11111 111111111111111 257799999999999999998875543
Q ss_pred cCCCccccCcCCCCCCCCccccCCCCCcc-----cCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCcccccc
Q 003474 392 ASNNVLDGLNMFDGTDGHYFHSGSRGYHW-----MWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTH 466 (817)
Q Consensus 392 ~s~~~~~~l~~fdg~~~~yf~~~~~g~~~-----~w~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~ 466 (817)
....... .....+.++.....+... ..+..-||-++||||+||++.++--++.|.|||+.||-.-.. +..
T Consensus 95 ~~~~~~~----~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy~yp-~~~ 169 (311)
T PF02638_consen 95 NAPDVSH----ILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGIHLDDYFYP-PPS 169 (311)
T ss_pred CCCchhh----hhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCCCCeEEecccccc-ccc
Confidence 3221100 000111111100011000 012245899999999999999999999999999999943211 111
Q ss_pred cCccccccCCcccccC-----cccC-------hhHH-HHHHHHHHHhhccCCCEEE
Q 003474 467 HGLQVAFTGNYSEYFG-----FATD-------VDAV-VYLMLVNDMIHGLYPEAVS 509 (817)
Q Consensus 467 ~g~~~~f~~~~~~~~g-----~~~~-------~~a~-~fl~~~~~~v~~~~P~~~~ 509 (817)
.|....=...|..+.| ...+ .+.+ .|++++.+.||+++|++.+
T Consensus 170 ~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~kP~v~~ 225 (311)
T PF02638_consen 170 FGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIKPWVKF 225 (311)
T ss_pred CCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Confidence 1211100011222322 1111 1222 6889999999999998654
No 57
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=98.51 E-value=2e-07 Score=104.19 Aligned_cols=82 Identities=23% Similarity=0.428 Sum_probs=72.1
Q ss_pred CCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCC------HHHHHHHHHHHH-HcCcEEEE
Q 003474 313 INTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGT------PDDLKSLIDKAH-ELGLLVLM 385 (817)
Q Consensus 313 ~G~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt------~edlk~LV~~aH-~~GI~VIl 385 (817)
.|.|..-. ++|+.++++|||.|+++|+++-.. ++.-|.+.|..+++|.|.. .++++++|.+++ +.||.+|.
T Consensus 18 ~G~~~~W~-~~l~~~~~~GYNmIHftPlq~~G~-S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~ 95 (423)
T PF14701_consen 18 MGPFSDWE-KHLKVISEKGYNMIHFTPLQERGE-SNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMT 95 (423)
T ss_pred cCCHhHHH-HHHHHHHHcCCcEEEecccccCCC-CCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEE
Confidence 47777766 699999999999999999999765 3457999999999999865 379999999995 79999999
Q ss_pred eeeccccCCCc
Q 003474 386 DIVHSHASNNV 396 (817)
Q Consensus 386 DvV~NH~s~~~ 396 (817)
|||+|||+.++
T Consensus 96 DvV~NHtA~nS 106 (423)
T PF14701_consen 96 DVVLNHTANNS 106 (423)
T ss_pred EEeeccCcCCC
Confidence 99999999987
No 58
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=98.40 E-value=1.3e-06 Score=77.47 Aligned_cols=83 Identities=20% Similarity=0.299 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhCCCCCCcE-EEee-ecCCCcEEEEEc----CcEEEEEEcCCCCcccceEEcccCCCceEEEEcCCCCC
Q 003474 693 FDRAMQHLEEKYGFMTSEHQ-YVSR-KDEGDRVIVFER----GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPL 766 (817)
Q Consensus 693 f~r~Li~LR~~~~~l~~g~~-~i~~-~~~~~~Vlaf~R----~~llvV~Nf~~~~~~~~~~i~v~~~g~~~~vl~sd~~~ 766 (817)
|||+||+||+++|+|+.+.. .+.. ...++.++++.| +.++|++||++ ++ .++. ....++.++.++...
T Consensus 1 ~yr~Li~LRr~~PaL~~~~~~~~~~~~~~~~~l~~~~r~~~~~~l~v~~Nls~-~~---~~~~--~~~~~~~l~~s~~~~ 74 (89)
T PF11941_consen 1 FYRRLIALRRQHPALRDGDFRFLEVERDAPDALLAFRRTGGGERLLVAFNLSD-EP---VTVP--EGPWGEVLFSSEPAR 74 (89)
T ss_dssp HHHHHHHHHHHHTHHCCSEEEEEEEEEEEETTEEEEEEEETTEEEEEEEE-SS-S----EEEE--TSCCEEEEEECSCSS
T ss_pred CHHHHHHHHhhCccccCCCcccEEEEecCCCEEEEEEEEcCCceEEEEEecCC-Cc---EEcc--CCCCCeEEEcCCCcc
Confidence 79999999999999998833 2322 134566888888 47999999995 22 2333 445567777765543
Q ss_pred cCCccccCCCcceeccccccCCCCeEEEEEEcCceEEEE
Q 003474 767 FGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVY 805 (817)
Q Consensus 767 ~gG~~~~~~~~~~~~~~~~~~~~~~~i~l~lpp~s~~Vl 805 (817)
+++ .++|||.+++||
T Consensus 75 ~~~------------------------~~~L~p~~~~v~ 89 (89)
T PF11941_consen 75 AGG------------------------AGTLPPWSVVVL 89 (89)
T ss_dssp E--------------------------EEEE-TTEEEEE
T ss_pred ccc------------------------CceECCCEEEEC
Confidence 322 489999999986
No 59
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=98.25 E-value=4.1e-05 Score=88.83 Aligned_cols=238 Identities=16% Similarity=0.228 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHcCcEEEEeeec--cccCCCccccCcCC-----------CCCCCCccccCCCCCcccCCCCCCCCCCHH
Q 003474 367 DDLKSLIDKAHELGLLVLMDIVH--SHASNNVLDGLNMF-----------DGTDGHYFHSGSRGYHWMWDSRLFNYGSWE 433 (817)
Q Consensus 367 edlk~LV~~aH~~GI~VIlDvV~--NH~s~~~~~~l~~f-----------dg~~~~yf~~~~~g~~~~w~~~~ln~~~pe 433 (817)
++++++.+.||++||++|-|+-+ ++-|.+.+.....| -|.++.+|... | ..|+.|.+|+..-+
T Consensus 198 ~Q~~~~~~yA~~~Gi~L~gDLpigV~~dsaDvWa~~~lF~l~~~~~p~~vaGaPPD~Fs~~--G--Q~WG~P~y~w~~l~ 273 (497)
T PRK14508 198 RQWKALKAYANDKGIEIIGDLPIYVAYDSADVWANPELFKLDEDGKPTVVAGVPPDYFSET--G--QLWGNPVYNWDALR 273 (497)
T ss_pred HHHHHHHHHHHHCCCEEEEeeecccCCCCHHHHcChhhhcCCCCCCcceeeeCCCCCCCcc--c--CcCCCCCcCHHHHH
Confidence 34555677799999999999975 33333321111111 35566677543 3 34788888764321
Q ss_pred --HHHHHHHHHHHHHHhCCccEEEEecCCcccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCEEEEE
Q 003474 434 --VLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIG 511 (817)
Q Consensus 434 --V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~~~v~~~~P~~~~Ig 511 (817)
-.+..++-+++-++ .+|.+|+|.+..+... .-++.+ .-....|.....+..+++..+...+ +++.+||
T Consensus 274 ~~gy~ww~~rlr~~~~--~~~~lRIDH~~Gf~r~-W~IP~~---~~~a~~G~~v~~p~~~l~~~l~~e~----~~~~vig 343 (497)
T PRK14508 274 KDGYRWWIERLRRSFK--LYDIVRIDHFRGFEAY-WEIPAG---EKTAINGRWVPGPGKDLFEAVKEEL----GDLPIIA 343 (497)
T ss_pred hcCcHHHHHHHHHHHH--hCCeEEecchhhhcee-eeecCC---CCCCCCCeeecCCHHHHHHHHHHHh----CCCCEEE
Confidence 12345666666666 8999999987543110 011110 0000112223334456666555444 6789999
Q ss_pred ecCCCCCCccccccc-CCc-ccchhhhHHHHHHHHHHHhhcchhhhhhhhHHhhccCcccccceecccCccccccCccch
Q 003474 512 EDVSGMPTFCIPVQD-GGV-GFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTI 589 (817)
Q Consensus 512 E~~~~~p~~~~~~~~-ggl-gFD~~l~~~~~d~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~v~y~esHD~~r~g~~t~ 589 (817)
|+.+..|...+.... -|+ |+. +. . +.... .... ......++..+|.|+.+||++.+.
T Consensus 344 EDLG~vp~~V~~~l~~~gi~g~~------Vl----~-f~~~~---~~~~---~~~p~~~~~~~v~~~~THD~~Tl~---- 402 (497)
T PRK14508 344 EDLGVITPDVEELRDRFGFPGMK------IL----Q-FAFDG---DSDN---PYLPHNYPRNSVVYTGTHDNDTTV---- 402 (497)
T ss_pred eECCCCCHHHHHHHHHcCCCccE------EE----E-ecCCC---CCCC---CCCCcCCCCCeEEECCCCCCHHHH----
Confidence 998765554433322 121 111 10 0 00000 0000 011134677899999999998652
Q ss_pred hhhc-cChh---HHhhhhcCCCCChhhhHHHHHHHHHHHHHHhCCCCceEeecccccCCCC
Q 003474 590 AFWL-MDKD---MYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPE 646 (817)
Q Consensus 590 ~~~~-~~~~---~~~~~~~~~~~~~~~~~~~al~kla~~l~ltlpG~p~l~y~G~E~G~~e 646 (817)
..|. .+.+ .+..+.+... . ...+..+.-+++..+..=+|+-+=|=+|+.+
T Consensus 403 gWw~~~~~~~~~~~~~~l~~~~-~------~~~~~~~~~~~~~S~s~l~i~~lqDllgl~~ 456 (497)
T PRK14508 403 GWWESLDPEERKRVADYLGRSS-E------EEIHWALIRLALASVADLAILPMQDLLGLGS 456 (497)
T ss_pred HHHhCCCHHHHHHHHHHhccCC-c------hhHHHHHHHHHhcCCchheeeeHHHHhCCCC
Confidence 2221 1211 1111111101 0 1233334445566666657766767677753
No 60
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=98.09 E-value=1.8e-05 Score=75.69 Aligned_cols=125 Identities=25% Similarity=0.254 Sum_probs=83.0
Q ss_pred hhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeecc---ccCCCccc
Q 003474 322 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS---HASNNVLD 398 (817)
Q Consensus 322 ~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~N---H~s~~~~~ 398 (817)
+.+++||++|+|+|.+..=-- +.+=|-|+.-....|.++ .+-|+++|++||++||+|+.=+-++ .+...|++
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h----~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCH----GGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDFSWDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccc----cEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhCCc
Confidence 578999999999998654211 113366777777788888 7889999999999999999766554 11233444
Q ss_pred cCc-CCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEec
Q 003474 399 GLN-MFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDG 458 (817)
Q Consensus 399 ~l~-~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~ 458 (817)
|.. .-+|+. ........+.|-..++| . ..+++++..++--++.|.+|||=||.
T Consensus 79 W~~~~~~G~~----~~~~~~~~~~~~~~c~n--s-~Y~e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 79 WFVRDADGRP----MRGERFGYPGWYTCCLN--S-PYREFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred eeeECCCCCC----cCCCCcCCCCceecCCC--c-cHHHHHHHHHHHHHHcCCCCEEEecC
Confidence 432 223331 00001112224445555 3 45689999999999999999998883
No 61
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=97.99 E-value=2.2e-05 Score=91.50 Aligned_cols=196 Identities=18% Similarity=0.251 Sum_probs=102.8
Q ss_pred CCCCH-HhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCC-------------------------
Q 003474 312 IINTY-ANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGT------------------------- 365 (817)
Q Consensus 312 ~~G~~-~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt------------------------- 365 (817)
++|+| ..+. ..++.+++.|+..++|.|+.......++-|.+.+=|+.+|-|=+
T Consensus 13 GIGDfg~dl~-~~~d~~~~~G~~i~qllpl~pt~~~~~sPY~p~S~~alNPlyI~l~~l~e~~~~~~~~~~~~~~~~~~~ 91 (496)
T PF02446_consen 13 GIGDFGDDLY-QFIDWAAEAGQSIWQLLPLNPTGPGNSSPYSPSSRFALNPLYIDLEALPEFGLLDEAEEIEELAELRDA 91 (496)
T ss_dssp SS--SSHHHH-HHHHHHHHCT--EEE----S-B-TTCTTTTSBS-SSS--GGGS-SHHHHHTTSS-----GGGS-S---S
T ss_pred ceecHHHHHH-HHHHHHHHcCCCeeccccccCCCCCCCCCCCCCCCCcCChHHcCHHHhhhccccchhhhhhhccccccc
Confidence 79999 7777 79999999999999999999876666678888888887776522
Q ss_pred --------------------------------------------------------------------------------
Q 003474 366 -------------------------------------------------------------------------------- 365 (817)
Q Consensus 366 -------------------------------------------------------------------------------- 365 (817)
T Consensus 92 ~~VDY~~v~~~K~~~L~~af~~f~~~~~~~~~f~~F~~~~~~wL~~yA~f~al~~~~~~~~w~~WP~~~~~~~~~~~l~~ 171 (496)
T PF02446_consen 92 DRVDYEAVAALKRRALRKAFERFKEQAERREEFEAFCEQNGEWLEDYALFCALKEKFGGAPWREWPEEELRDRDSEALAA 171 (496)
T ss_dssp SB--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSGGGS--HHHHTT-HHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhcchhHhHHHHHHHHHHhCCCCcccCCHHHHhhhcHHHHHH
Confidence
Q ss_pred -------------------HHHHHHHHHHHHHcCcEEEEeeecc--ccCCCccccCcCC-----CCCCCCccccCCCCCc
Q 003474 366 -------------------PDDLKSLIDKAHELGLLVLMDIVHS--HASNNVLDGLNMF-----DGTDGHYFHSGSRGYH 419 (817)
Q Consensus 366 -------------------~edlk~LV~~aH~~GI~VIlDvV~N--H~s~~~~~~l~~f-----dg~~~~yf~~~~~g~~ 419 (817)
-++++++.+.|+++||++|.|+-+- +-|.+.+.....| -|.++.+|.. .|+
T Consensus 172 ~~~~~~~~i~f~~~lQ~~~~~Q~~~~~~~A~~~gI~L~gDlpigv~~dsaDvW~~~~lF~~~~~aGaPPD~fs~--~GQ- 248 (496)
T PF02446_consen 172 FREEHADEIEFHKFLQWLAFKQWKAAKEYAREMGIGLIGDLPIGVSPDSADVWANPELFLLDASAGAPPDYFSP--TGQ- 248 (496)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEESS--SSSHHHHH-GGGB-B-EEEEE-SSSSSS--S-E-
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeccceECCCcHHHHhCHHHHhCcCeeCCCCCCCCc--ccc-
Confidence 0678888889999999999999853 3333321111122 2556667753 233
Q ss_pred ccCCCCCCCCCCHHH--HHHHHHHHHHHHHhCCccEEEEecCCcccccccCccccccCCcccccCcccChhHHHHHHHHH
Q 003474 420 WMWDSRLFNYGSWEV--LRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVN 497 (817)
Q Consensus 420 ~~w~~~~ln~~~peV--~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~ 497 (817)
.|+.|.+|+..-+- -+..++-+++-++ .+|++|+|.+..+... .-++. +......|.....+..+++..+.
T Consensus 249 -~WG~P~y~w~~l~~~gy~ww~~rl~~~~~--~~d~lRIDH~~Gf~r~-W~IP~---~~~~a~~G~~~~~p~~~ll~~l~ 321 (496)
T PF02446_consen 249 -NWGNPPYNWDALKEDGYRWWIDRLRANMR--LFDALRIDHFRGFFRY-WWIPA---GGETAIDGAWVRYPGEDLLAILA 321 (496)
T ss_dssp -EEEEE-B-HHHHHHTTTHHHHHHHHHHHC--C-SEEEEETGGGGTEE-EEEET---T-SSSTT-EEEE--HHHHHHHHH
T ss_pred -cCCCCCcCHHHHHHcCCHHHHHHHHHHHH--hCCchHHHHHHHHHhe-eEecC---CCCCCCCceeecchHHHHHHHHH
Confidence 46777776643111 1345555555555 8999999987554211 11111 01111122223334456666666
Q ss_pred HHhhccCCCEEEEEecCCCCCCcc
Q 003474 498 DMIHGLYPEAVSIGEDVSGMPTFC 521 (817)
Q Consensus 498 ~~v~~~~P~~~~IgE~~~~~p~~~ 521 (817)
...+. ++.+|||+-+-.|...
T Consensus 322 ~e~~r---~~~vigEDLG~vp~~v 342 (496)
T PF02446_consen 322 LESGR---DCLVIGEDLGTVPPEV 342 (496)
T ss_dssp HHHS----S-EEEE--TSS--HHH
T ss_pred HHcCC---CCcEEEeecCCCcHHH
Confidence 55543 7999999986555433
No 62
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=97.98 E-value=1.6e-05 Score=69.22 Aligned_cols=53 Identities=23% Similarity=0.343 Sum_probs=43.2
Q ss_pred EEEEEecCCcCEEEEEeecCCCCCcccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeC
Q 003474 185 ITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDT 247 (817)
Q Consensus 185 v~fr~WAP~A~~V~LvgdFN~W~~~~~pm~r~~~GvWei~lp~~~~g~~~~~~g~~yk~~~~~ 247 (817)
++|+..+ .|++|+|+|+||+|+. ..||++...| |++.++- ..|. ..|||.++.
T Consensus 4 v~f~~~~-~a~~V~v~G~F~~W~~-~~pm~~~~~~-~~~~~~L-~~g~------y~YkF~Vdg 56 (79)
T cd02859 4 TTFVWPG-GGKEVYVTGSFDNWKK-KIPLEKSGKG-FSATLRL-PPGK------YQYKFIVDG 56 (79)
T ss_pred EEEEEcC-CCcEEEEEEEcCCCCc-cccceECCCC-cEEEEEc-CCCC------EEEEEEECC
Confidence 7898888 8999999999999987 6899998877 9999863 2343 379998853
No 63
>PLN02950 4-alpha-glucanotransferase
Probab=97.97 E-value=0.0005 Score=85.04 Aligned_cols=192 Identities=13% Similarity=0.138 Sum_probs=99.5
Q ss_pred CcceecCCCCccchHhHHHHHHHHHHHHHHHHhccCchhhhhcccccCCcEEe---CC--cEEEEEecCC---cCEEEEE
Q 003474 129 QNIYEIDPNLLGHRQHLDYRYGRYKQMCEDIDKYEGGLAAFSRGYEKFGFIRS---DT--GITYREWAPG---AKSASLI 200 (817)
Q Consensus 129 ~~~~~~dp~l~~~~~~~~~R~~~~~~~~~~i~~~~g~l~~f~~~y~~lG~~~~---~~--gv~fr~WAP~---A~~V~Lv 200 (817)
..+.-.|.|-....+.+-+|-. |.+. |....-+ .+--.+++++.. .+ .|+|++=+|. -++|+|+
T Consensus 102 ~~~~i~D~W~~~~~~~~~~~s~-f~~~---~~~~~~~----~~~~~~~~~~~~~~~~~~v~V~F~v~~~~~~~Gq~v~Vv 173 (909)
T PLN02950 102 ELVELHDLWQKSGPEALFFRSA-FKDV---IFRHSWG----VNTERPLGALNKPPAPDEIVVRFKIACPRLEEGTSVYVT 173 (909)
T ss_pred ceEEEEEEecCCchhhhhhHHH-Hhhh---hcccccc----cccccccccccccCCCCceeEEEEEecCccCCCCeEEEE
Confidence 3455577886655555555442 4322 2111100 011224444432 22 3899999984 5789999
Q ss_pred ee---cCCCCCc-ccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCCccccCCccceeeccCCCCCCCceEE-
Q 003474 201 GD---FNNWNPN-ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGIKDSIPAWIKFSVQAPGEIPYNGIY- 275 (817)
Q Consensus 201 gd---FN~W~~~-~~pm~r~~~GvWei~lp~~~~g~~~~~~g~~yk~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~- 275 (817)
|+ .-+|+.. +.+|.......|++.+.-.. +.. ...|||.+...+|....-. -.......+........+
T Consensus 174 Gs~~eLGnW~~~~a~~Ls~~~~p~W~~~v~lp~-~~~----~~EYKyv~~~~~g~v~WE~-g~NR~~~~p~~~~~~~~~~ 247 (909)
T PLN02950 174 GSIAQLGNWQVDDGLKLNYTGDSIWEADCLVPK-SDF----PIKYKYALQTAEGLVSLEL-GVNRELSLDSSSGKPPSYI 247 (909)
T ss_pred echhhcCCCCcccccccccCCCCcEEEEEEecC-CCc----eEEEEEEEEcCCCceEEee-CCCceeecCcccCCceEEE
Confidence 85 4479854 46787777899999996322 111 2489999877655321000 000111111111111111
Q ss_pred eCCCccccccccCCCCCCCCCceEEEeecCCCCCC--CCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccC
Q 003474 276 YDPPEEEKYVFQHPQPKKPKSLRIYEAHVGMSSTE--PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEH 343 (817)
Q Consensus 276 ~d~~~~~~~~~~~~~~~~~~~~~IYE~hv~~~~~~--~~~G~~~~~~~~~L~ylk~LGv~~I~LmPi~e~ 343 (817)
..+. ..++.+..+ -..+ . +|+-+-... -++|+|.++. +.++.+++.|.+.|||+||.+.
T Consensus 248 ~~~~----~~~~~~~~R-~~Gi-~--~~l~SLrS~~s~GIGDf~dl~-~~id~~a~~G~~~~QilPl~~t 308 (909)
T PLN02950 248 VASD----GAFREMPWR-GAGV-A--VPVFSIRSEEDVGVGEFLDLK-LLVDWAVKSGLHLVQLLPVNDT 308 (909)
T ss_pred eccc----ccccCCCcc-ceEE-E--EecccCCCCCCCCeeCHHHHH-HHHHHHHHcCCCEEEECCCCCC
Confidence 1111 111111100 0111 1 122221122 3789999888 7999999999999999999653
No 64
>PLN02635 disproportionating enzyme
Probab=97.95 E-value=7.6e-05 Score=86.85 Aligned_cols=139 Identities=18% Similarity=0.253 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHcCcEEEEeee--ccccCCCccccCcCC-----------CCCCCCccccCCCCCcccCCCCCCCCCCH-
Q 003474 367 DDLKSLIDKAHELGLLVLMDIV--HSHASNNVLDGLNMF-----------DGTDGHYFHSGSRGYHWMWDSRLFNYGSW- 432 (817)
Q Consensus 367 edlk~LV~~aH~~GI~VIlDvV--~NH~s~~~~~~l~~f-----------dg~~~~yf~~~~~g~~~~w~~~~ln~~~p- 432 (817)
++++++-+.||++||++|-|+- ++|-|.+.+.....| -|.++.||... | ..|+.|.+|+..-
T Consensus 224 ~Qw~~l~~yA~~~Gi~L~gDlpi~Va~dSaDvWa~~~lF~ld~~g~p~~~aGaPPD~Fs~~--G--Q~WG~P~y~w~~l~ 299 (538)
T PLN02635 224 RQWQAVRSYANEKGISIIGDMPIYVGGHSADVWANRKLFLLNKTGFPLLVSGVPPDAFSET--G--QLWGSPLYDWKAMA 299 (538)
T ss_pred HHHHHHHHHHHHCCCEEEEEeecccCCCcHHHhcCHHhhcCCCCCCcceeeeCCCCcCCcc--c--ccCCCcCcCHHHHH
Confidence 4566678889999999999998 455555542111111 25666777643 3 3478888876431
Q ss_pred -HHHHHHHHHHHHHHHhCCccEEEEecCCcccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCEEEEE
Q 003474 433 -EVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIG 511 (817)
Q Consensus 433 -eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~~~v~~~~P~~~~Ig 511 (817)
.--+..++-+++=++ .+|.+|+|.+..+... .-++. +.-.-..|.....+..+++. .+.+..+++.+||
T Consensus 300 ~~gy~ww~~Rlr~~~~--~~d~lRIDHf~Gf~r~-W~IP~---g~~ta~~G~wv~~Pg~~l~~----~l~~~~~~~~vIa 369 (538)
T PLN02635 300 KDGYSWWAGRMRRALE--LYDEFRIDHFRGFAGY-WAVPA---DAKTAMNGRWKVGPGKSFFD----AIKKAVGKIDIIA 369 (538)
T ss_pred hcCcHHHHHHHHHHHH--hCCeEEecchhhhhee-eeccC---CCCCCCCCeeeeCCHHHHHH----HHHHHcCCCCEEE
Confidence 122345566666666 7899999987543110 00110 00001112223344445554 3445556899999
Q ss_pred ecCCCCCC
Q 003474 512 EDVSGMPT 519 (817)
Q Consensus 512 E~~~~~p~ 519 (817)
|+.+--|.
T Consensus 370 EDLG~I~~ 377 (538)
T PLN02635 370 EDLGVITE 377 (538)
T ss_pred eeCCCCCH
Confidence 99865544
No 65
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.88 E-value=0.00013 Score=81.73 Aligned_cols=181 Identities=19% Similarity=0.193 Sum_probs=105.6
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEEcCcccC-CCCCC-----CCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeee
Q 003474 315 TYANFRDDVLPRIKRLGYNAVQIMAVQEH-SYYAS-----FGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIV 388 (817)
Q Consensus 315 ~~~~~~~~~L~ylk~LGv~~I~LmPi~e~-~~~~s-----~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV 388 (817)
+=.++. +.|+.|+.||+|+|+.-=.-.. ..|.| .++. +..+.+++ +-|=|..+|++||++||.|+-=+-
T Consensus 62 ~~~el~-~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~-~~~~~~~~---g~DpLa~~I~~AHkr~l~v~aWf~ 136 (418)
T COG1649 62 QRQELK-DILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL-PGVLGVDP---GYDPLAFVIAEAHKRGLEVHAWFN 136 (418)
T ss_pred cHHHHH-HHHHHHHHcCCceeEEEEecCccccccccccccccCc-CcccCCCC---CCChHHHHHHHHHhcCCeeeechh
Confidence 334666 5899999999999985332221 11111 2222 11122233 237799999999999999998887
Q ss_pred ccccCCCcc-------ccCcCCCCCCCCccccCCCCCcccC-CCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCC
Q 003474 389 HSHASNNVL-------DGLNMFDGTDGHYFHSGSRGYHWMW-DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 460 (817)
Q Consensus 389 ~NH~s~~~~-------~~l~~fdg~~~~yf~~~~~g~~~~w-~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~ 460 (817)
+--++.+.. +++..- ....-|... ..| ...-||=++||||++|.+.+.--+..|.|||.-||-.-
T Consensus 137 ~~~~a~~~s~~~~~~p~~~~~~-~~~~~~~~~------~~~~~~~~ldPg~Pevq~~i~~lv~evV~~YdvDGIQfDd~f 209 (418)
T COG1649 137 PYRMAPPTSPLTKRHPHWLTTK-RPGWVYVRH------QGWGKRVWLDPGIPEVQDFITSLVVEVVRNYDVDGIQFDDYF 209 (418)
T ss_pred hcccCCCCChhHhhCCCCcccC-CCCeEEEec------CCceeeeEeCCCChHHHHHHHHHHHHHHhCCCCCceecceee
Confidence 766665431 111100 001112211 112 33468999999999999999999999999999999754
Q ss_pred cccccccCccccccCCc--ccc-cCcccChh---------HHHHHHHHHHHhhccCCCEEE
Q 003474 461 SMMYTHHGLQVAFTGNY--SEY-FGFATDVD---------AVVYLMLVNDMIHGLYPEAVS 509 (817)
Q Consensus 461 ~m~~~~~g~~~~f~~~~--~~~-~g~~~~~~---------a~~fl~~~~~~v~~~~P~~~~ 509 (817)
.+. .+.|... .+-.+ .|. -+.-.+.+ .-.|++.++..||+.+|++.+
T Consensus 210 y~~-~~~gy~~-~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VKavKp~v~~ 268 (418)
T COG1649 210 YYP-IPFGYDP-DTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVKAVKPNVKF 268 (418)
T ss_pred ccc-CccccCc-hHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhhCCCeEE
Confidence 321 1111100 00000 011 00111222 126889999999999998764
No 66
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=97.87 E-value=2.4e-05 Score=90.22 Aligned_cols=98 Identities=22% Similarity=0.294 Sum_probs=62.9
Q ss_pred CCceEEEeecCCCCC---CCCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCC-------CCCccccccCC----C
Q 003474 295 KSLRIYEAHVGMSST---EPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYAS-------FGYHVTNFFAP----S 360 (817)
Q Consensus 295 ~~~~IYE~hv~~~~~---~~~~G~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s-------~GY~v~dy~av----d 360 (817)
..-+|||-+-- |.. .+.--+..-|+ +-.+-+|++|||..||-|-+-+..+++ -||.-+|-|.+ .
T Consensus 563 DSqvIYEgFSN-FQ~~~t~~~eytN~~IA-~Na~lFk~wGITsFemAPQY~Ss~D~tFLDSiiqNGYAFtDRYDLg~s~p 640 (809)
T PF02324_consen 563 DSQVIYEGFSN-FQDFPTTPSEYTNVVIA-KNADLFKSWGITSFEMAPQYRSSTDGTFLDSIIQNGYAFTDRYDLGMSKP 640 (809)
T ss_dssp HT-EEEE---T-TB---SSGGGSHHHHHH-HTHHHHHHTTEEEEE----S-B--SSSSHHHHTT-SSSBS-TT-SSSSS-
T ss_pred hcchhhccccc-cccCCCChHHHHHHHHH-HhHHHHHhcCcceeeeCcceecCCCCcchhhHhhcCccccchhhhcCCCC
Confidence 35689997532 222 22224556666 688999999999999999988776665 49999998775 4
Q ss_pred CCCCCHHHHHHHHHHHHHcCcEEEEeeeccccCC
Q 003474 361 SRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASN 394 (817)
Q Consensus 361 ~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~s~ 394 (817)
-.|||.+||+.-|+++|+.||+||.|||++.+..
T Consensus 641 tKYGs~~dL~~AikALH~~GiqviaDwVpdQiYn 674 (809)
T PF02324_consen 641 TKYGSVEDLRNAIKALHAAGIQVIADWVPDQIYN 674 (809)
T ss_dssp BTTB-HHHHHHHHHHHHHTT-EEEEEE-TSEE--
T ss_pred CCCCCHHHHHHHHHHHHHcCcchhhhhchHhhhC
Confidence 6899999999999999999999999999987753
No 67
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=97.63 E-value=0.0021 Score=82.32 Aligned_cols=142 Identities=17% Similarity=0.202 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHcCcEE--EEeeecc--ccCCCcccc-----CcCCCCCCCCccccCCCCCcccCCCCCCCCCCHH--HH
Q 003474 367 DDLKSLIDKAHELGLLV--LMDIVHS--HASNNVLDG-----LNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWE--VL 435 (817)
Q Consensus 367 edlk~LV~~aH~~GI~V--IlDvV~N--H~s~~~~~~-----l~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~pe--V~ 435 (817)
++++++-+.|+++||+| |-|+-+. +-|.+.+.. +..--|.++.+|... |+ .|+.|.+|+..-+ --
T Consensus 932 ~Q~~~~~~~A~~~Gm~iGl~gDLpvgv~~dsadvWa~~~~f~l~~~~GaPPD~fs~~--GQ--~WG~P~y~w~~l~~~gy 1007 (1221)
T PRK14510 932 RQWQAAKDYAQEQGLSIGFYGDLAIGVAPDGADAWAERSCFALDVSIGAPPDYFNPE--GQ--NWGLPPYDPRALRRDGY 1007 (1221)
T ss_pred HHHHHHHHHHHHCCCEEeEEeeeeeeeCCCcHHHhcCHHHhcCCCccCCCCCcCCcc--cc--cCCCcCcCHHHHHhcCc
Confidence 45667788899999999 9999753 333332111 112336677777543 33 4788888764321 12
Q ss_pred HHHHHHHHHHHHhCCccEEEEecCCcccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCEEEEEecCC
Q 003474 436 RFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVS 515 (817)
Q Consensus 436 ~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~~~v~~~~P~~~~IgE~~~ 515 (817)
+..++-++.-++ ++|++|+|-+..+... .-++.+-+ -..|.....+..+++..+....+. -++.+|||+.+
T Consensus 1008 ~~w~~rlr~~~~--~~~~lRIDH~~G~~r~-W~IP~~~~----a~~G~~v~~P~~~l~~~l~~e~~r--~~~~vIgEDLG 1078 (1221)
T PRK14510 1008 RWFIERIRANMR--HAGALRIDHVRGLERL-FEVPQGAS----AKEGAYLKGPGEELFGQVALESQR--AQCPVIGEDLG 1078 (1221)
T ss_pred HHHHHHHHHHHH--hCCeEEeccHHhhHHh-eeCCCCCC----CCCCeEEECCHHHHHHHHHHHhCc--cCCcEEEeeCC
Confidence 346667777776 8999999987554211 00110000 011222222334566555544432 26899999986
Q ss_pred CCCCcc
Q 003474 516 GMPTFC 521 (817)
Q Consensus 516 ~~p~~~ 521 (817)
--|.-.
T Consensus 1079 ~vp~~v 1084 (1221)
T PRK14510 1079 TIPSGV 1084 (1221)
T ss_pred cCCHHH
Confidence 655433
No 68
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=97.56 E-value=0.0012 Score=74.50 Aligned_cols=134 Identities=16% Similarity=0.181 Sum_probs=79.9
Q ss_pred HhhHhhhhhHHHHcCCCEEEEcCcccCC---CCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeeccccC
Q 003474 317 ANFRDDVLPRIKRLGYNAVQIMAVQEHS---YYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 393 (817)
Q Consensus 317 ~~~~~~~L~ylk~LGv~~I~LmPi~e~~---~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~s 393 (817)
..+. +.++.++++||+.+.|=-=+-.. ...+.|.+..| ..+| |+.|+.|++.+|++||+.=|=+-+--++
T Consensus 58 ~~i~-~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~----~~kF--P~Gl~~l~~~i~~~Gmk~GlW~ePe~v~ 130 (394)
T PF02065_consen 58 EKIL-ELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPD----PKKF--PNGLKPLADYIHSLGMKFGLWFEPEMVS 130 (394)
T ss_dssp HHHH-HHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBB----TTTS--TTHHHHHHHHHHHTT-EEEEEEETTEEE
T ss_pred HHHH-HHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEC----hhhh--CCcHHHHHHHHHHCCCeEEEEecccccc
Confidence 3444 57888899999998763222111 11122333322 2455 4579999999999999999999776665
Q ss_pred CCccccCcCCCCCCCCccccCCCCCc-ccCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCcc
Q 003474 394 NNVLDGLNMFDGTDGHYFHSGSRGYH-WMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSM 462 (817)
Q Consensus 394 ~~~~~~l~~fdg~~~~yf~~~~~g~~-~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m 462 (817)
.++. .+. ..+.+....+.... .......||+.+|+|+++|.+.+.-.++++|||.|.+|....+
T Consensus 131 ~~S~----l~~-~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~ 195 (394)
T PF02065_consen 131 PDSD----LYR-EHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDI 195 (394)
T ss_dssp SSSC----HCC-SSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-T
T ss_pred chhH----HHH-hCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCC
Confidence 5431 011 01122211111111 1112246999999999999999999999999999999997655
No 69
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.33 E-value=0.0041 Score=69.23 Aligned_cols=141 Identities=23% Similarity=0.297 Sum_probs=83.3
Q ss_pred CHHhhHhhhhhHHHHcCC--CEEEEcCcccCC---------------CCCCCCCccccccCCCCCCCCHHHHHHHHHHHH
Q 003474 315 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHS---------------YYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAH 377 (817)
Q Consensus 315 ~~~~~~~~~L~ylk~LGv--~~I~LmPi~e~~---------------~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH 377 (817)
+-.++. +.++.+++.|| ++|+|=+ +... ....|-|+... |....+|- +.++||+++|
T Consensus 22 ~~~ev~-~v~~~~~~~~iP~d~i~lD~-W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~-f~~~~~FP---dp~~mi~~Lh 95 (340)
T cd06597 22 TQAEVM-RQMDAHEEHGIPVTVVVIEQ-WSDEATFYVFNDAQYTPKDGGAPLSYDDFS-FPVEGRWP---NPKGMIDELH 95 (340)
T ss_pred CHHHHH-HHHHHHHHcCCCeeEEEEec-ccCcceeeeeccchhcccccCCcceecccc-cCccccCC---CHHHHHHHHH
Confidence 445665 68888999887 7788753 1100 00011122222 11123443 5789999999
Q ss_pred HcCcEEEEeeeccccCCC-cccc--CcCC-CCCCCCccccCCCCC--c--ccC--CCCCCCCCCHHHHHHHHHHHHHHHH
Q 003474 378 ELGLLVLMDIVHSHASNN-VLDG--LNMF-DGTDGHYFHSGSRGY--H--WMW--DSRLFNYGSWEVLRFLLSNARWWLE 447 (817)
Q Consensus 378 ~~GI~VIlDvV~NH~s~~-~~~~--l~~f-dg~~~~yf~~~~~g~--~--~~w--~~~~ln~~~peV~~~l~~~l~~Wl~ 447 (817)
++|++|++=+.+ ++..+ +... ...+ .+....||-....|. . ..| ....+|+.||++++...+.++.+++
T Consensus 96 ~~G~kv~l~v~P-~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~~Ww~~~~~~~~~ 174 (340)
T cd06597 96 EQGVKVLLWQIP-IIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAAQWWMEKRRYLVD 174 (340)
T ss_pred HCCCEEEEEecC-ccccccccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCCHHHHHHHHHHHHHHHH
Confidence 999999995544 33211 1000 0001 111223443333321 1 123 3467999999999999999999998
Q ss_pred hCCccEEEEecCCcc
Q 003474 448 EYKFDGFRFDGVTSM 462 (817)
Q Consensus 448 e~gvDGfR~D~v~~m 462 (817)
++|||||.+|+....
T Consensus 175 ~~Gidg~w~D~~E~~ 189 (340)
T cd06597 175 ELGIDGFKTDGGEHV 189 (340)
T ss_pred hcCCcEEEecCCCcc
Confidence 899999999987643
No 70
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=97.30 E-value=0.00097 Score=73.52 Aligned_cols=136 Identities=15% Similarity=0.164 Sum_probs=85.9
Q ss_pred CHHhhHhhhhhHHHHcCC--CEEEEcCcccCCCCCCCCCcc-ccccCCCC-CCCCHHHHHHHHHHHHHcCcEEEEeeecc
Q 003474 315 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHV-TNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDIVHS 390 (817)
Q Consensus 315 ~~~~~~~~~L~ylk~LGv--~~I~LmPi~e~~~~~s~GY~v-~dy~avd~-~~Gt~edlk~LV~~aH~~GI~VIlDvV~N 390 (817)
+-.++. +.++.+++.|| ++|||- .+-.-...++||.. .+ |..|+ +|- +.++||+++|++|++|++- |..
T Consensus 21 s~~~v~-~~~~~~~~~~iP~d~i~ld-dw~~~~~~~~g~~~~~~-f~~d~~~FP---dp~~mi~~Lh~~G~~~~~~-i~P 93 (317)
T cd06594 21 GTDKVL-EALEKARAAGVKVAGLWLQ-DWTGRRETSFGDRLWWN-WEWDPERYP---GLDELIEELKARGIRVLTY-INP 93 (317)
T ss_pred CHHHHH-HHHHHHHHcCCCeeEEEEc-cccCcccccccceeeee-eEEChhhCC---CHHHHHHHHHHCCCEEEEE-ecC
Confidence 556666 68888999887 778885 33111112344421 12 33343 564 3679999999999999994 445
Q ss_pred ccCCCccccCcCC-CCCCCCccccCCCC-----CcccCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCC
Q 003474 391 HASNNVLDGLNMF-DGTDGHYFHSGSRG-----YHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 460 (817)
Q Consensus 391 H~s~~~~~~l~~f-dg~~~~yf~~~~~g-----~~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~ 460 (817)
++..+.... | ++....||-....| ..|.+....+|+.||++++...+.++..+.++|||||-+|+-.
T Consensus 94 ~v~~~~~~~---y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E 166 (317)
T cd06594 94 YLADDGPLY---YEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEMLLDLGLSGWMADFGE 166 (317)
T ss_pred ceecCCchh---HHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHHhhhcCCcEEEecCCC
Confidence 555443110 1 12222344333222 2223344679999999999999999988667999999999643
No 71
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=97.22 E-value=0.0048 Score=67.77 Aligned_cols=174 Identities=12% Similarity=0.166 Sum_probs=102.2
Q ss_pred CHHhhHhhhhhHHHHcC--CCEEEEcCcccCCCCCCCCCccccccCCC-CCCCCHHHHHHHHHHHHHcCcEEEEeeeccc
Q 003474 315 TYANFRDDVLPRIKRLG--YNAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 391 (817)
Q Consensus 315 ~~~~~~~~~L~ylk~LG--v~~I~LmPi~e~~~~~s~GY~v~dy~avd-~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH 391 (817)
+-..+. +.+..+++.| +++|+|=.=+.. +|.-.+ |..+ .+|.. .++||+++|++||+|++-+.+ +
T Consensus 22 ~~~~v~-~~~~~~~~~~iP~d~~~lD~~w~~------~~~~~~-f~~d~~~FPd---~~~~i~~l~~~G~~~~~~~~P-~ 89 (308)
T cd06593 22 DEEEVN-EFADGMRERNLPCDVIHLDCFWMK------EFQWCD-FEFDPDRFPD---PEGMLSRLKEKGFKVCLWINP-Y 89 (308)
T ss_pred CHHHHH-HHHHHHHHcCCCeeEEEEeccccc------CCccee-eEECcccCCC---HHHHHHHHHHCCCeEEEEecC-C
Confidence 445565 6889999999 566776543321 121122 4444 47764 579999999999999999876 5
Q ss_pred cCCCccccCcCCC-CCCCCccccCCCCCc---ccC--CCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCccccc
Q 003474 392 ASNNVLDGLNMFD-GTDGHYFHSGSRGYH---WMW--DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYT 465 (817)
Q Consensus 392 ~s~~~~~~l~~fd-g~~~~yf~~~~~g~~---~~w--~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~ 465 (817)
++.++. .|. +....||-....+.. ..| ....+|+.||++++++.+.++.+++ .|||||-+|....+...
T Consensus 90 i~~~~~----~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~Gid~~~~D~~e~~p~~ 164 (308)
T cd06593 90 IAQKSP----LFKEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MGVDCFKTDFGERIPTD 164 (308)
T ss_pred CCCCch----hHHHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hCCcEEecCCCCCCCcc
Confidence 655431 111 111233332222111 112 2356899999999999999999888 89999999987654321
Q ss_pred ccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCC--EEEEEe
Q 003474 466 HHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPE--AVSIGE 512 (817)
Q Consensus 466 ~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~~~v~~~~P~--~~~IgE 512 (817)
-. ...+. ..-...|.-++.+-+.+.+.+++..++ .+++.-
T Consensus 165 ~~----~~~g~---~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~~R 206 (308)
T cd06593 165 VV----YYDGS---DGEKMHNYYALLYNKAVYEATKEVKGEGEAVVWAR 206 (308)
T ss_pred cc----ccCCC---CcceeeeHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Confidence 00 00000 000012333445556666666666554 555554
No 72
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.16 E-value=0.002 Score=70.56 Aligned_cols=128 Identities=21% Similarity=0.396 Sum_probs=83.2
Q ss_pred CHHhhHhhhhhHHHHcCC--CEEEEcCcccCCCCCCCCCccccccCCC-CCCCCHHHHHHHHHHHHHcCcEEEEeeeccc
Q 003474 315 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 391 (817)
Q Consensus 315 ~~~~~~~~~L~ylk~LGv--~~I~LmPi~e~~~~~s~GY~v~dy~avd-~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH 391 (817)
+-..+. +.++.++++|+ +.|+|=-=+. . .+| + |..+ .+|-. .++||+++|++|+++++=+-+ +
T Consensus 28 s~~~v~-~~~~~~~~~~iP~d~i~iD~~w~-~---~~g----~-f~~d~~~FPd---p~~mi~~l~~~G~k~~l~i~P-~ 93 (303)
T cd06592 28 NQETVL-NYAQEIIDNGFPNGQIEIDDNWE-T---CYG----D-FDFDPTKFPD---PKGMIDQLHDLGFRVTLWVHP-F 93 (303)
T ss_pred CHHHHH-HHHHHHHHcCCCCCeEEeCCCcc-c---cCC----c-cccChhhCCC---HHHHHHHHHHCCCeEEEEECC-e
Confidence 445666 58888999995 6777643221 1 122 2 3333 36653 789999999999999998877 4
Q ss_pred cCCCccccCcCCC-CCCCCccccCCCC----CcccC--CCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCC
Q 003474 392 ASNNVLDGLNMFD-GTDGHYFHSGSRG----YHWMW--DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 460 (817)
Q Consensus 392 ~s~~~~~~l~~fd-g~~~~yf~~~~~g----~~~~w--~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~ 460 (817)
++.++. .|. +....||-....| ....| ....+|+.||++++.+.+.++..+.+.|||||-+|...
T Consensus 94 i~~~s~----~~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E 165 (303)
T cd06592 94 INTDSE----NFREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGE 165 (303)
T ss_pred eCCCCH----HHHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCC
Confidence 444321 111 2222344332222 01122 23568999999999999999999977999999999764
No 73
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=97.07 E-value=0.00058 Score=80.64 Aligned_cols=81 Identities=21% Similarity=0.368 Sum_probs=69.5
Q ss_pred CCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCC------CHHHHHHHHHHHHH-cCcEEEEe
Q 003474 314 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCG------TPDDLKSLIDKAHE-LGLLVLMD 386 (817)
Q Consensus 314 G~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~G------t~edlk~LV~~aH~-~GI~VIlD 386 (817)
|-+.+-. .+|.-+|+.|||.|+++||+|-.. ++.-|...|-..+++.|- +.+|.++||+.+|+ -||--|-|
T Consensus 139 Gpl~eWe-prL~va~e~gYNmIHfTPlqelG~-S~S~YSl~dql~~~~~~~~~~~k~s~eDV~~lV~~l~rewnvlsi~D 216 (1521)
T KOG3625|consen 139 GPLDEWE-PRLRVAKESGYNMIHFTPLQELGL-SRSCYSLADQLELNPDFSRPNRKYSFEDVGQLVEKLKREWNVLSITD 216 (1521)
T ss_pred CChhhhh-HHHHHHHHcCCceEeeeeHHHhcc-CCCccchHhhhhcChhhhccCCCCCHHHHHHHHHHHHhhcCeeeeeh
Confidence 5454444 689999999999999999999764 345789999888888887 79999999999995 79999999
Q ss_pred eeccccCCCc
Q 003474 387 IVHSHASNNV 396 (817)
Q Consensus 387 vV~NH~s~~~ 396 (817)
||+||++.++
T Consensus 217 vV~NHtAnns 226 (1521)
T KOG3625|consen 217 VVYNHTANNS 226 (1521)
T ss_pred hhhhccccCC
Confidence 9999999986
No 74
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=97.00 E-value=0.02 Score=74.59 Aligned_cols=187 Identities=17% Similarity=0.178 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHcC--cEEEEeeecc--ccCCCcccc-----CcCCCCCCCCccccCCCCCcccCCCCCCCCCCHH--HH
Q 003474 367 DDLKSLIDKAHELG--LLVLMDIVHS--HASNNVLDG-----LNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWE--VL 435 (817)
Q Consensus 367 edlk~LV~~aH~~G--I~VIlDvV~N--H~s~~~~~~-----l~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~pe--V~ 435 (817)
++++++-+.|+++| |++|-|+-+. +-|.+.+.. +..--|.++.+|... |+ .|+.|.+|+..-+ =-
T Consensus 386 ~Ql~~~~~~A~~~GM~IgLigDLpVgV~~dsADvWa~p~lF~l~~~aGAPPD~Fs~~--GQ--~WG~P~y~p~~L~~~gY 461 (1693)
T PRK14507 386 LQLAAAGERAQALGMRLGLYRDLAVGVDRGGSETWSHPELFANGASIGAPPDELNPK--GQ--DWGLPPFDPLELERDGY 461 (1693)
T ss_pred HHHHHHHHHHHhCCCeEEEEEeeeceECCCcHHHhcCHhhhhcCCccCCCCCcCccc--cc--cCCCcCcCHHHHHhcCh
Confidence 45556667788999 7889999753 333332111 112236667777643 33 4788888774321 12
Q ss_pred HHHHHHHHHHHHhCCccEEEEecCCcccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCEEEEEecCC
Q 003474 436 RFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVS 515 (817)
Q Consensus 436 ~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~~~v~~~~P~~~~IgE~~~ 515 (817)
+..++-++.-++ ++|++|+|-+..+... .-++.+- ....|.....+..+++..+. +.+..+++.+|||+-+
T Consensus 462 ~ww~~rlr~~m~--~~g~lRIDH~lGl~Rl-W~IP~g~----ta~~G~yv~yP~~~ll~~la--LEs~r~~~~VIgEDLG 532 (1693)
T PRK14507 462 APFRALLRANMR--HAGALRIDHVMQLMRL-FWIPLGR----SAREGAYVAYPFEPMLAVLA--LESHRNRCLVIGEDLG 532 (1693)
T ss_pred HHHHHHHHHHHH--HCCEEEeccHHhhhHh-cccCCCC----CCCCCeEEECCHHHHHHHHH--HHHhcCCCeEEEecCC
Confidence 345666666676 6899999987543211 0111110 11112223333344544332 1344567899999986
Q ss_pred CCCCccccccc-CCc-ccchhhhHHHHHHHHHHHhhcchhhhhhhhHHhhccCcccccceecccCcccccc
Q 003474 516 GMPTFCIPVQD-GGV-GFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALV 584 (817)
Q Consensus 516 ~~p~~~~~~~~-ggl-gFD~~l~~~~~d~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~v~y~esHD~~r~ 584 (817)
--|...+.... -|+ |+. +. ++..... + ....-..|+.++|.|+.+||++.+
T Consensus 533 tVp~~Vr~~l~~~gi~Gm~------VL-----~Fe~~~~----~---~~~~P~~y~~~sva~tgTHD~pTl 585 (1693)
T PRK14507 533 TVPEGFRDALARAGVLSYR------IL-----YFEREDG----G---AFKPPAAYPADALAAVTTHDLPTL 585 (1693)
T ss_pred CCCHHHHHHHHHcCCCCce------EE-----EeeecCC----C---CCCCcccCcCCeEEECCCCCCHhH
Confidence 55443322221 121 111 10 0000000 0 011123567789999999999865
No 75
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=96.92 E-value=0.016 Score=67.56 Aligned_cols=128 Identities=20% Similarity=0.288 Sum_probs=68.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH---------hCCccEEEEecCCcccccccCccccccCCcccccCcccChhHHHHHHH
Q 003474 425 RLFNYGSWEVLRFLLSNARWWLE---------EYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLML 495 (817)
Q Consensus 425 ~~ln~~~peV~~~l~~~l~~Wl~---------e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~ 495 (817)
.++|-.||.|+..-+..+-|.+. +..|||||+|||..+ |.+ .|+.
T Consensus 144 NDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNV-----------------------dAD---lLqi 197 (809)
T PF02324_consen 144 NDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNV-----------------------DAD---LLQI 197 (809)
T ss_dssp EEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS------------------------TH---HHHH
T ss_pred ccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeeccccc-----------------------CHH---HHHH
Confidence 56788999999999999999997 788999999999766 223 2333
Q ss_pred HHHHhhcc---C------CCEEEEEecCCCC-CCcccccccCCcccchhhhHHHHHHHHHHHhh-cchhhhhhhh-HHhh
Q 003474 496 VNDMIHGL---Y------PEAVSIGEDVSGM-PTFCIPVQDGGVGFDYRLQMAIADKWIELLKK-RDEDWKMGAI-VHTM 563 (817)
Q Consensus 496 ~~~~v~~~---~------P~~~~IgE~~~~~-p~~~~~~~~gglgFD~~l~~~~~d~~~~~l~~-~~~~~~~~~l-~~~l 563 (817)
....+++. . -.-+.|-|.|+.. |..........|-+|..++..+... |.. ......+..+ ...+
T Consensus 198 a~dyfkaaYgv~~~~a~An~HlSilE~ws~nd~~y~~~~g~~qL~mD~~~~~~l~~s----L~~~~~~R~~l~~li~~sl 273 (809)
T PF02324_consen 198 AGDYFKAAYGVDKNDANANKHLSILEAWSSNDPDYVKDTGNPQLTMDNGLRLALLYS----LTRPSNNRSGLEPLITNSL 273 (809)
T ss_dssp HHHHHHHHH-TTTBHHHHCTC--EESSSTTTHHHHHHHTTSSSBEEEHHHHHHHHHH----TSS-TTC---CTHHHHSSS
T ss_pred HHHHHHHHhCCCcChhhHhhhheeeeccccCChHHHhcCCCceeeecHHHHHHHHHH----hcCCccccccHHHHhhhhh
Confidence 33333222 1 2468899999753 2222222223366788877766422 221 1222223322 2333
Q ss_pred ccCccc------ccceecccCcccc
Q 003474 564 TNRRWL------EKCVAYAESHDQA 582 (817)
Q Consensus 564 ~~~~~~------~~~v~y~esHD~~ 582 (817)
.+|... .....|+.+||..
T Consensus 274 vnR~~d~~en~a~pNYsFvrAHDse 298 (809)
T PF02324_consen 274 VNRSNDSTENEAQPNYSFVRAHDSE 298 (809)
T ss_dssp SECSEE--SSESS-EEEES-BSSTT
T ss_pred cccccCCcCCcccCceeeeecccHH
Confidence 333221 1134689999986
No 76
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=96.85 E-value=0.012 Score=68.84 Aligned_cols=141 Identities=14% Similarity=0.173 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHcCcEEEEeeecc--ccCCCccccC----------cC-CCCCCCCccccCCCCCcccCCCCCCCCCCHH
Q 003474 367 DDLKSLIDKAHELGLLVLMDIVHS--HASNNVLDGL----------NM-FDGTDGHYFHSGSRGYHWMWDSRLFNYGSWE 433 (817)
Q Consensus 367 edlk~LV~~aH~~GI~VIlDvV~N--H~s~~~~~~l----------~~-fdg~~~~yf~~~~~g~~~~w~~~~ln~~~pe 433 (817)
++++++-+.|+++||++|-|+-+- +-|.+.+... .. .+|-++.||... | ..|+.|.+|+..-+
T Consensus 212 ~Q~~~l~~yA~~~~I~L~gDlpi~v~~dsaDvWa~~~~F~l~~~~GaP~~agvpPd~Fs~~--G--Q~WG~P~y~w~~l~ 287 (513)
T TIGR00217 212 SQFQALKRYANDMGIGLYGDLPVFVAYDSADVWADPELFCLRASAGAPKPAGLGPDYFLEQ--G--QNWGLPPYDWNVLK 287 (513)
T ss_pred HHHHHHHHHHhcCCcEEEEeCcceeCCCcHHHHhCHHHhCCCcccCCCCCCCCCCCccccc--C--CCCCCCCcCHHHHH
Confidence 445566677889999999999753 3333321100 01 334346677643 3 34888888775321
Q ss_pred --HHHHHHHHHHHHHHhCCccEEEEecCCcccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCEEEEE
Q 003474 434 --VLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIG 511 (817)
Q Consensus 434 --V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~~~v~~~~P~~~~Ig 511 (817)
--+..++-++.=++ .+|++|+|.+..+... .-++.+- -.-..|.....+..+++..+....... +.+||
T Consensus 288 ~~gy~ww~~rlr~~~~--~~d~lRIDHf~Gf~r~-w~IP~g~---~ta~~G~wv~~Pg~~l~~~l~~e~~~~---~~vIa 358 (513)
T TIGR00217 288 ARGYEWWIKRLGANMQ--YADILRIDHFRGFVSL-WWVPAGE---STAFNGAWVHYPGDDFFNILANESKDN---LKIIG 358 (513)
T ss_pred hcCcHHHHHHHHHHHH--hCCeEEecchhhhcee-eeecCCC---CCCCCCeeEeCCHHHHHHHHHHHcCCC---CcEEe
Confidence 12345566666666 8999999987543211 0111111 001112223344556666665554321 78999
Q ss_pred ecCCCCCCc
Q 003474 512 EDVSGMPTF 520 (817)
Q Consensus 512 E~~~~~p~~ 520 (817)
|+-+--|.-
T Consensus 359 EDLG~v~~~ 367 (513)
T TIGR00217 359 EDLGTVPEE 367 (513)
T ss_pred eeCCCCCHH
Confidence 998654443
No 77
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=96.78 E-value=0.0044 Score=68.37 Aligned_cols=130 Identities=18% Similarity=0.236 Sum_probs=80.3
Q ss_pred CHHhhHhhhhhHHHHcCC--CEEEEcCcccCCCCCCCCCccccccCCCC-CCCCHHHHHHHHHHHHHcCcEEEEeeeccc
Q 003474 315 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDIVHSH 391 (817)
Q Consensus 315 ~~~~~~~~~L~ylk~LGv--~~I~LmPi~e~~~~~s~GY~v~dy~avd~-~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH 391 (817)
+-.++. +.+..+++.+| +.|||=.=+- . +|. .|..++ +|- +.++||+.+|++|++|++=+. -+
T Consensus 22 ~~~~v~-~~~~~~~~~~iP~d~i~lD~~~~-~-----~~~---~f~~d~~~FP---dp~~~i~~l~~~g~k~~~~~~-P~ 87 (317)
T cd06600 22 PQDKVV-EVVDIMQKEGFPYDVVFLDIHYM-D-----SYR---LFTWDPYRFP---EPKKLIDELHKRNVKLVTIVD-PG 87 (317)
T ss_pred CHHHHH-HHHHHHHHcCCCcceEEEChhhh-C-----CCC---ceeechhcCC---CHHHHHHHHHHCCCEEEEEee-cc
Confidence 445555 57888888887 6777642111 1 121 123332 554 457999999999999999554 34
Q ss_pred cCCCccccCcCC-CCCCCCccccCCCCC---cccC--CCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCC
Q 003474 392 ASNNVLDGLNMF-DGTDGHYFHSGSRGY---HWMW--DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 460 (817)
Q Consensus 392 ~s~~~~~~l~~f-dg~~~~yf~~~~~g~---~~~w--~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~ 460 (817)
++.+.. . ..| .+....||.....+. ...| ....+|+.||++++...+.++..+.+.|||||-+|...
T Consensus 88 i~~~~~-~-~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gvdg~w~D~~E 160 (317)
T cd06600 88 IRVDQN-Y-SPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGVDGIWLDMNE 160 (317)
T ss_pred ccCCCC-C-hHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCCceEEeeCCC
Confidence 443210 0 011 122234443332221 1123 23568999999999999999999877999999999753
No 78
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=96.65 E-value=0.029 Score=59.99 Aligned_cols=137 Identities=19% Similarity=0.186 Sum_probs=80.4
Q ss_pred hHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCC--CHHHHHHHHHHHHHcCcEEEEeeeccccCCCc
Q 003474 319 FRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCG--TPDDLKSLIDKAHELGLLVLMDIVHSHASNNV 396 (817)
Q Consensus 319 ~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~G--t~edlk~LV~~aH~~GI~VIlDvV~NH~s~~~ 396 (817)
.+++.++.||++|+|+|-|.--++......-+| .+. ..+.|+++|+.|+++||+||||+--. .
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~----------~~~~~~~~~ld~~v~~a~~~gi~vild~h~~----~- 86 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGY----------NYDETYLARLDRIVDAAQAYGIYVILDLHNA----P- 86 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTT----------SBTHHHHHHHHHHHHHHHHTT-EEEEEEEES----T-
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCc----------cccHHHHHHHHHHHHHHHhCCCeEEEEeccC----c-
Confidence 455789999999999999765432111011111 122 26899999999999999999997543 0
Q ss_pred cccCcCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhC----CccEEEEecCCcccccccCcccc
Q 003474 397 LDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEY----KFDGFRFDGVTSMMYTHHGLQVA 472 (817)
Q Consensus 397 ~~~l~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~----gvDGfR~D~v~~m~~~~~g~~~~ 472 (817)
.+.. ........+...+++.+.++.+...| .|-|| +..
T Consensus 87 ------------~w~~-----------~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~--el~------------- 128 (281)
T PF00150_consen 87 ------------GWAN-----------GGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGW--ELW------------- 128 (281)
T ss_dssp ------------TCSS-----------STSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEE--ESS-------------
T ss_pred ------------cccc-----------cccccccchhhHHHHHhhhhhhccccCCCCcEEEE--Eec-------------
Confidence 0000 01112223345566666667777665 33333 222
Q ss_pred ccCCcccccCccc-------C-hhHHHHHHHHHHHhhccCCCEEEEEec
Q 003474 473 FTGNYSEYFGFAT-------D-VDAVVYLMLVNDMIHGLYPEAVSIGED 513 (817)
Q Consensus 473 f~~~~~~~~g~~~-------~-~~a~~fl~~~~~~v~~~~P~~~~IgE~ 513 (817)
+|...... + ..-..+.+.+.+.|++..|+.+++.+.
T Consensus 129 -----NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~ 172 (281)
T PF00150_consen 129 -----NEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHLIIVGG 172 (281)
T ss_dssp -----SSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred -----CCccccCCccccccccchhhhhHHHHHHHHHHhcCCcceeecCC
Confidence 12111111 1 222468899999999999998777765
No 79
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=96.52 E-value=0.026 Score=61.74 Aligned_cols=166 Identities=25% Similarity=0.246 Sum_probs=94.3
Q ss_pred HhhhhhHHHHcCCCEEEEcCcccCC-CCCCCCCccccccC--CCCCCCCHHHHHHHHHHHHHcCcEEEEeeeccccCCCc
Q 003474 320 RDDVLPRIKRLGYNAVQIMAVQEHS-YYASFGYHVTNFFA--PSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNV 396 (817)
Q Consensus 320 ~~~~L~ylk~LGv~~I~LmPi~e~~-~~~s~GY~v~dy~a--vd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~s~~~ 396 (817)
.++.|+.|++-|+|+|-+ +-. .++.-.|....--+ +...-....|+++|+++||++||.+|.=+|.= ++.
T Consensus 15 ~~~~~~~i~~t~lNavVI----DvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~F---kD~ 87 (316)
T PF13200_consen 15 LDKLLDLIKRTELNAVVI----DVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVF---KDP 87 (316)
T ss_pred HHHHHHHHHhcCCceEEE----EEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEe---cCh
Confidence 347899999999999954 322 11222233222111 11111125799999999999999999999841 111
Q ss_pred cccCcCCCCCCCCccccCCCCCcccC--CCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCcccccccCcccccc
Q 003474 397 LDGLNMFDGTDGHYFHSGSRGYHWMW--DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFT 474 (817)
Q Consensus 397 ~~~l~~fdg~~~~yf~~~~~g~~~~w--~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~ 474 (817)
. +.. ..+.+-.....|..|.- +..-+|-.+++|++|+++.++-..+ .|||.+-||-+..=- .+.....
T Consensus 88 ~--la~---~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~-~GFdEIqfDYIRFP~---~~~~~~l- 157 (316)
T PF13200_consen 88 V--LAE---AHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAK-LGFDEIQFDYIRFPD---EGRLSGL- 157 (316)
T ss_pred H--Hhh---hChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHH-cCCCEEEeeeeecCC---CCccccc-
Confidence 0 000 01111111112221110 1234788899999999999999988 899999999875321 1111000
Q ss_pred CCcccccCcccChhHH-HHHHHHHHHhhcc
Q 003474 475 GNYSEYFGFATDVDAV-VYLMLVNDMIHGL 503 (817)
Q Consensus 475 ~~~~~~~g~~~~~~a~-~fl~~~~~~v~~~ 503 (817)
.|........-.+++ +|++.+++.++..
T Consensus 158 -~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~ 186 (316)
T PF13200_consen 158 -DYSENDTEESRVDAITDFLAYAREELHPY 186 (316)
T ss_pred -ccCCCCCcchHHHHHHHHHHHHHHHHhHc
Confidence 111110111124555 8999999999765
No 80
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=96.51 E-value=0.011 Score=65.28 Aligned_cols=130 Identities=14% Similarity=0.241 Sum_probs=78.4
Q ss_pred CHHhhHhhhhhHHHHcCC--CEEEEcCcccCCCCCCCCCccccccCCCC-CCCCHHHHHHHHHHHHHcCcEEEEeeeccc
Q 003474 315 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDIVHSH 391 (817)
Q Consensus 315 ~~~~~~~~~L~ylk~LGv--~~I~LmPi~e~~~~~s~GY~v~dy~avd~-~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH 391 (817)
+-..+. +.++.+++.|| ++|+|=- .+....|+ .-|..++ +|-. .++||+.+|++|++||+-+ .-+
T Consensus 22 ~~~ev~-~~~~~~~~~~iP~d~i~lD~----~~~~~~~~---~~f~~d~~~FPd---p~~mi~~L~~~G~kv~~~i-~P~ 89 (319)
T cd06591 22 TQEELL-DVAKEYRKRGIPLDVIVQDW----FYWPKQGW---GEWKFDPERFPD---PKAMVRELHEMNAELMISI-WPT 89 (319)
T ss_pred CHHHHH-HHHHHHHHhCCCccEEEEec----hhhcCCCc---eeEEEChhhCCC---HHHHHHHHHHCCCEEEEEe-cCC
Confidence 344555 57788887755 6776631 11111121 1234443 6654 4689999999999999954 344
Q ss_pred cCCCccccCcCC-CCCCCCccccCCCC--CcccCC--CCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCC
Q 003474 392 ASNNVLDGLNMF-DGTDGHYFHSGSRG--YHWMWD--SRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 460 (817)
Q Consensus 392 ~s~~~~~~l~~f-dg~~~~yf~~~~~g--~~~~w~--~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~ 460 (817)
++.+.. .| .+....||.....+ +...|. ...+|+.||++++...+.++..+.++|||||-+|...
T Consensus 90 v~~~~~----~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E 159 (319)
T cd06591 90 FGPETE----NYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYDKGVDAWWLDAAE 159 (319)
T ss_pred cCCCCh----hHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhcCCCcEEEecCCC
Confidence 554321 11 11122343332222 112333 3679999999999988877765666999999999864
No 81
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=96.37 E-value=0.029 Score=65.93 Aligned_cols=126 Identities=20% Similarity=0.328 Sum_probs=70.0
Q ss_pred hhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCC------------CCCCHHHHHHHHHHHHHcCcEEEEeeec
Q 003474 322 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSS------------RCGTPDDLKSLIDKAHELGLLVLMDIVH 389 (817)
Q Consensus 322 ~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~------------~~Gt~edlk~LV~~aH~~GI~VIlDvV~ 389 (817)
+.|+.|+.+-||.||+= .|-|.-...+..+. |-=..+-.|.+|++||+.||++|.=.-+
T Consensus 122 ~~i~~L~~yHIN~~QFY---------DW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmi 192 (559)
T PF13199_consen 122 AEIDQLNRYHINGLQFY---------DWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMI 192 (559)
T ss_dssp HHHHHHHHTT--EEEET---------S--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEES
T ss_pred HHHHHHHhhCcCeEEEE---------eeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhh
Confidence 78999999999999852 23333333222222 2223789999999999999999875443
Q ss_pred cccCCCccccCcCCCCCCCC--ccccCCCC------CcccCCC--CCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecC
Q 003474 390 SHASNNVLDGLNMFDGTDGH--YFHSGSRG------YHWMWDS--RLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGV 459 (817)
Q Consensus 390 NH~s~~~~~~l~~fdg~~~~--yf~~~~~g------~~~~w~~--~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v 459 (817)
.-+..+.. -+|..+. .|...... ....|.+ ..+|-+|++-|++|+..+...++.+|||||.+|.+
T Consensus 193 yaa~~~~~-----~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~ 267 (559)
T PF13199_consen 193 YAANNNYE-----EDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYIINQMNKAIQNFGFDGWHLDQL 267 (559)
T ss_dssp SEEETT-------S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHHHHHHHHHHHHT--EEEEE-S
T ss_pred hccccCcc-----cccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHHHHHHHHHHccCCceEeeecc
Confidence 33322210 1222222 12211110 0112433 56899999999999999999999999999999998
Q ss_pred Cc
Q 003474 460 TS 461 (817)
Q Consensus 460 ~~ 461 (817)
..
T Consensus 268 G~ 269 (559)
T PF13199_consen 268 GN 269 (559)
T ss_dssp --
T ss_pred CC
Confidence 64
No 82
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=96.29 E-value=0.078 Score=64.22 Aligned_cols=187 Identities=14% Similarity=0.197 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHcCc--EEEEeeecc--ccCCCcccc-----CcCCCCCCCCccccCCCCCcccCCCCCCCCCCHH--HH
Q 003474 367 DDLKSLIDKAHELGL--LVLMDIVHS--HASNNVLDG-----LNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWE--VL 435 (817)
Q Consensus 367 edlk~LV~~aH~~GI--~VIlDvV~N--H~s~~~~~~-----l~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~pe--V~ 435 (817)
++++++.+.|+++|| ++|-|+-+. +-|.+.+.. +..--|.++.+|... | ..|+.|.+|+..-+ =-
T Consensus 355 ~Ql~~~~~~A~~~Gm~igL~gDLpvgv~~dsaDvWa~~~~F~l~~~~GaPPD~fs~~--G--Q~WG~P~y~w~~l~~~gy 430 (695)
T PRK11052 355 SQFAACWQLSQQLGMPIGLYRDLAVGVAEGGAETWCDRELYCLKASVGAPPDILGPL--G--QNWGLPPMDPHVLQARAY 430 (695)
T ss_pred HHHHHHHHHHHHCCCceeEEEeeeceECCCcHHHhCCHHHhcCCCcCCCCCCcCCcc--c--ccCCCcCcCHHHHHhcCc
Confidence 677888899999999 679999753 333332111 112236667777643 3 34788887764311 11
Q ss_pred HHHHHHHHHHHHhCCccEEEEecCCcccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCEEEEEecCC
Q 003474 436 RFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVS 515 (817)
Q Consensus 436 ~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~~~v~~~~P~~~~IgE~~~ 515 (817)
+..++-++.-++ ++|++|+|-+..+... .-++.+- ....|.....+.-+++..+ .+.+..+++.+|||+.+
T Consensus 431 ~ww~~rlr~~~~--~~g~lRIDH~~Gl~rl-W~IP~g~----~a~~G~yv~~P~~~ll~~l--ales~~~~~~vIgEDLG 501 (695)
T PRK11052 431 QPFIDLLRANMQ--HCGALRIDHVMSLLRL-WWIPYGE----TADQGAYVHYPVDDLLAIL--ALESQRHRCMVIGEDLG 501 (695)
T ss_pred HHHHHHHHHHHH--hCCEEEecchhhhhee-eecCCCC----CCCCCeeEeCCHHHHHHHH--HHHHhcCCCCEEEeeCC
Confidence 235566666666 7999999987544211 0111110 1111222222333444333 12444568899999986
Q ss_pred CCCCccccccc-CCc-ccchhhhHHHHHHHHHHHhhcchhhhhhhhHHhhccCcccccceecccCcccccc
Q 003474 516 GMPTFCIPVQD-GGV-GFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALV 584 (817)
Q Consensus 516 ~~p~~~~~~~~-ggl-gFD~~l~~~~~d~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~v~y~esHD~~r~ 584 (817)
.-|...+.... -|+ |+. +. .+... .+ +. ...-..|+.++|.|+.+||++.+
T Consensus 502 ~Vp~~Vr~~l~~~gi~g~~------Vl-----~Fe~~-~~---~~---~~~P~~y~~~sva~t~THD~pTl 554 (695)
T PRK11052 502 TVPVEIVGKLRDSGVYSYK------VL-----YFEND-EE---GG---FRAPAAYPEQSMATLTTHDLPTL 554 (695)
T ss_pred CCCHHHHHHHHHcCCCCcE------EE-----Eeccc-CC---CC---CCCcccCcCCeEEECCCCCChhH
Confidence 55543332221 121 111 10 00000 00 00 01124567789999999999865
No 83
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=96.27 E-value=0.024 Score=63.22 Aligned_cols=132 Identities=13% Similarity=0.131 Sum_probs=79.1
Q ss_pred HhhHhhhhhHHHHcCC--CEEEEcCcccCCCCCCCCCccccccCCC-CCCCCHHHHHHHHHHHHHcCcEEEEeeeccccC
Q 003474 317 ANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 393 (817)
Q Consensus 317 ~~~~~~~L~ylk~LGv--~~I~LmPi~e~~~~~s~GY~v~dy~avd-~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~s 393 (817)
.++. +.+..+++.|+ +.|||=.=+- ..+++ |..+ .+|-.+.. ++||+++|++|++|++=+.+ |+.
T Consensus 24 ~~v~-~~~~~~r~~~iP~d~i~lD~~~~-~~~~~--------f~~d~~~FPdp~~-~~mi~~L~~~G~k~~~~i~P-~v~ 91 (339)
T cd06602 24 DEVK-EVVENMRAAGIPLDVQWNDIDYM-DRRRD--------FTLDPVRFPGLKM-PEFVDELHANGQHYVPILDP-AIS 91 (339)
T ss_pred HHHH-HHHHHHHHhCCCcceEEECcccc-cCccc--------eecccccCCCccH-HHHHHHHHHCCCEEEEEEeC-ccc
Confidence 4555 57788888886 6777632221 11112 2222 24543321 89999999999999997543 443
Q ss_pred CCc-cccCcCC-CCCCCCccccCCCCC-----cccCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCC
Q 003474 394 NNV-LDGLNMF-DGTDGHYFHSGSRGY-----HWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 460 (817)
Q Consensus 394 ~~~-~~~l~~f-dg~~~~yf~~~~~g~-----~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~ 460 (817)
.+. ......| ++....||-....|. .|......+|+.||++++...+.++..++++|||||-+|...
T Consensus 92 ~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E 165 (339)
T cd06602 92 ANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNE 165 (339)
T ss_pred cCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCCcEEEecCCC
Confidence 321 0000011 122223443322221 122223558999999999999999999988999999999754
No 84
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=96.09 E-value=0.056 Score=62.66 Aligned_cols=90 Identities=19% Similarity=0.267 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHcCcEEEEeeecccc--CCCccccC-----cCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHH--
Q 003474 367 DDLKSLIDKAHELGLLVLMDIVHSHA--SNNVLDGL-----NMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRF-- 437 (817)
Q Consensus 367 edlk~LV~~aH~~GI~VIlDvV~NH~--s~~~~~~l-----~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~-- 437 (817)
+.+.++=..|+++||.+|.|+-+.=. |.+.+... +.--|.++.+|... | ..|+.+..|+..-.-+.|
T Consensus 210 ~Q~~~~k~~A~~~~I~i~gDLpv~va~~saDvW~~~~~f~~~~~~GaPPD~f~~~--G--Q~Wg~p~yn~~~l~~~~y~w 285 (520)
T COG1640 210 RQLAALKRYANDMGIGIIGDLPVGVAQDSADVWANPEYFCLDESAGAPPDVFNAQ--G--QDWGLPPYNPEALKKDGYDW 285 (520)
T ss_pred HHHHHHHHHHHhcCceEeecccceecCCchhhhcCcccccccccCCCCCCccccc--c--cccCCCCCCHHHHHHcccHH
Confidence 55666667788899999999976533 22221100 01124455555432 2 357777655543222211
Q ss_pred HHHHHHHHHHhCCccEEEEecCCcc
Q 003474 438 LLSNARWWLEEYKFDGFRFDGVTSM 462 (817)
Q Consensus 438 l~~~l~~Wl~e~gvDGfR~D~v~~m 462 (817)
.++-++.=++ .+|+.|+|-+..+
T Consensus 286 wierlr~~~~--~~~~lRIDHf~Gl 308 (520)
T COG1640 286 WIERLRANLK--LYGILRIDHFRGL 308 (520)
T ss_pred HHHHHHHHHH--hcCeeeeeeecch
Confidence 2333333343 7899999987654
No 85
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=96.09 E-value=0.059 Score=64.75 Aligned_cols=134 Identities=13% Similarity=0.017 Sum_probs=82.0
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCC--CCccccccCCC-CCCCCHHHHHHHHHHHHHcCcEEEEeeeccc
Q 003474 315 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASF--GYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 391 (817)
Q Consensus 315 ~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~--GY~v~dy~avd-~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH 391 (817)
+-+++. ..|+.||++|+|+|+|-.+......+.+ -|-|..+.-+- +-| +-+.-.+ +|++|++|..-+-+--
T Consensus 332 q~~~L~-~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~r~d~f---~~~aw~l--~~r~~v~v~AWmp~~~ 405 (671)
T PRK14582 332 QDRNID-VLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPMRADLF---NRVAWQL--RTRAGVNVYAWMPVLS 405 (671)
T ss_pred HHHHHH-HHHHHHHHcCCCEEEEEeccCCCCCccccccccCccccccccCCc---CHHHHHH--HHhhCCEEEEecccee
Confidence 345565 7999999999999999887664433221 24444333331 112 1122222 9999999987765443
Q ss_pred cCCCcc-ccCcCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCc
Q 003474 392 ASNNVL-DGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTS 461 (817)
Q Consensus 392 ~s~~~~-~~l~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~ 461 (817)
++-+.. .-...++ ....+...++.|..+ ||-.+|+||+.|.++..-.+..+.|||+-||-=..
T Consensus 406 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~r-l~P~~pe~r~~i~~i~~dla~~~~~dGilf~Dd~~ 469 (671)
T PRK14582 406 FDLDPTLPRVKRLD------TGEGKAQIHPEQYRR-LSPFDDRVRAQVGMLYEDLAGHAAFDGILFHDDAV 469 (671)
T ss_pred eccCCCcchhhhcc------ccCCccccCCCCCcC-CCCCCHHHHHHHHHHHHHHHHhCCCceEEeccccc
Confidence 322110 0000010 001111235556555 99999999999999999999988999999986433
No 86
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=95.96 E-value=0.013 Score=64.71 Aligned_cols=129 Identities=12% Similarity=0.118 Sum_probs=77.9
Q ss_pred hhHhhhhhHHHHcCC--CEEEEcCcccCCCCCCCCCccccccCCC-CCCCCHHHHHHHHHHHHHcCcEEEEeeeccccCC
Q 003474 318 NFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASN 394 (817)
Q Consensus 318 ~~~~~~L~ylk~LGv--~~I~LmPi~e~~~~~s~GY~v~dy~avd-~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~s~ 394 (817)
++. +.+..+++.|| ++|+|-+=+.... |-.- .-|..+ .+|- +.++||+++|++|++|++-+. -+++.
T Consensus 30 ~v~-~~~~~~r~~~iP~d~i~ld~~~~~~~----~~~~-~~f~~d~~~FP---dp~~mi~~L~~~g~k~~~~i~-P~i~~ 99 (317)
T cd06599 30 ALL-EFIDKCREHDIPCDSFHLSSGYTSIE----GGKR-YVFNWNKDRFP---DPAAFVAKFHERGIRLAPNIK-PGLLQ 99 (317)
T ss_pred HHH-HHHHHHHHcCCCeeEEEEeccccccC----CCce-eeeecCcccCC---CHHHHHHHHHHCCCEEEEEeC-CcccC
Confidence 444 57888888887 7787643111100 1000 113333 4665 466999999999999999554 44443
Q ss_pred CccccCcCCC-CCCCCccccCCC------CCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCC
Q 003474 395 NVLDGLNMFD-GTDGHYFHSGSR------GYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 460 (817)
Q Consensus 395 ~~~~~l~~fd-g~~~~yf~~~~~------g~~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~ 460 (817)
++. .|+ +....||-.... +..|......+|+.||++++...+.++.-+.+.|||||-+|...
T Consensus 100 ~~~----~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E 168 (317)
T cd06599 100 DHP----RYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGIDSTWNDNNE 168 (317)
T ss_pred CCH----HHHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCCcEEEecCCC
Confidence 321 111 122234422211 12222233569999999999999999777666999999999753
No 87
>smart00632 Aamy_C Aamy_C domain.
Probab=95.82 E-value=0.041 Score=47.99 Aligned_cols=71 Identities=18% Similarity=0.163 Sum_probs=42.5
Q ss_pred CCCcEEEEEc-CcEEEEEEcCCCCcccceEEcccCCCceEEEEcCCCCCcCCccccCCCcceeccccccCCCCeEEEEEE
Q 003474 719 EGDRVIVFER-GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYA 797 (817)
Q Consensus 719 ~~~~Vlaf~R-~~llvV~Nf~~~~~~~~~~i~v~~~g~~~~vl~sd~~~~gG~~~~~~~~~~~~~~~~~~~~~~~i~l~l 797 (817)
.++++|+|.| +..+|++|.+.......+...+ ++|+|+++|.. ...|. .+.. ...+.+.++|
T Consensus 6 ~~~~~laF~Rg~~g~VaiN~~~~~~~~~~~t~l-p~G~Y~d~l~g---~~~g~-------~v~V------~~~G~~~~~l 68 (81)
T smart00632 6 NGDNQIAFERGSKGFVAINRSDSDLTITLQTSL-PAGTYCDVISG---LCTGK-------SVTV------GSNGIATFTL 68 (81)
T ss_pred CCCeEEEEECCCeEEEEEECCCCceEEEEeecC-CCcceEEEecC---cccCC-------EEEE------CCCCEEEEEE
Confidence 3455999999 5688889988532222333344 45999999873 11111 1111 0123588999
Q ss_pred cCce-EEEEE
Q 003474 798 PSRT-AVVYA 806 (817)
Q Consensus 798 pp~s-~~Vl~ 806 (817)
||++ ++|+.
T Consensus 69 ~~~~~v~i~~ 78 (81)
T smart00632 69 PAGGAVAIHV 78 (81)
T ss_pred CCCCeEEEEE
Confidence 9999 45544
No 88
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=95.64 E-value=0.041 Score=61.35 Aligned_cols=129 Identities=21% Similarity=0.309 Sum_probs=79.7
Q ss_pred CHHhhHhhhhhHHHHcCC--CEEEEcCcccCCCCCCCCCccccccCCCC-CCCCHHHHHHHHHHHHHcCcEEEEeeeccc
Q 003474 315 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDIVHSH 391 (817)
Q Consensus 315 ~~~~~~~~~L~ylk~LGv--~~I~LmPi~e~~~~~s~GY~v~dy~avd~-~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH 391 (817)
+-..+. +.++.+++.|| ++|||=.-+.. +|.. |..++ +|-. .++||+.+|++|++|++=+.+ |
T Consensus 22 ~~~~v~-~~~~~~~~~~iP~d~i~lD~~~~~------~~~~---f~~d~~~fPd---p~~m~~~l~~~g~~~~~~~~P-~ 87 (339)
T cd06604 22 PEEEVR-EIADEFRERDIPCDAIYLDIDYMD------GYRV---FTWDKERFPD---PKELIKELHEQGFKVVTIIDP-G 87 (339)
T ss_pred CHHHHH-HHHHHHHHhCCCcceEEECchhhC------CCCc---eeeccccCCC---HHHHHHHHHHCCCEEEEEEeC-c
Confidence 344555 68888998887 77887543321 1211 33343 6654 479999999999999987654 3
Q ss_pred cCCCccccCcCC-CCCCCCccccCCCCC---cccC--CCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCC
Q 003474 392 ASNNVLDGLNMF-DGTDGHYFHSGSRGY---HWMW--DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 460 (817)
Q Consensus 392 ~s~~~~~~l~~f-dg~~~~yf~~~~~g~---~~~w--~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~ 460 (817)
+..+. ....| .+....||-....|. ...| ....+|+.||++++...+.++..++ .|||||-+|...
T Consensus 88 v~~~~--~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~-~Gvdg~w~D~~E 159 (339)
T cd06604 88 VKVDP--GYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFVD-LGVDGIWNDMNE 159 (339)
T ss_pred eeCCC--CChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHhh-CCCceEeecCCC
Confidence 33211 00011 112223333322221 1122 2345899999999999999998875 999999999764
No 89
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=95.55 E-value=0.025 Score=65.34 Aligned_cols=132 Identities=20% Similarity=0.367 Sum_probs=76.9
Q ss_pred HHhhHhhhhhHHHHcCC--CEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeeccccC
Q 003474 316 YANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 393 (817)
Q Consensus 316 ~~~~~~~~L~ylk~LGv--~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~s 393 (817)
-..+. +.++.+++.|+ ++|+|-.-+.. .+..|.++.. +|- ++++|++.+|++|++|++-+.+ ++.
T Consensus 42 ~~~v~-~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~-------~FP---d~~~~~~~l~~~G~~~~~~~~P-~v~ 108 (441)
T PF01055_consen 42 QDEVR-EVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPE-------RFP---DPKQMIDELHDQGIKVVLWVHP-FVS 108 (441)
T ss_dssp HHHHH-HHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TT-------TTT---THHHHHHHHHHTT-EEEEEEES-EEE
T ss_pred HHHHH-HHHHHHHHcCCCccceeccccccc-cccccccccc-------ccc---chHHHHHhHhhCCcEEEEEeec-ccC
Confidence 34555 68888888887 45554433222 1122322222 443 7789999999999999999887 443
Q ss_pred CCccccCcCCC-CCCCCccccCCCC---CcccCC--CCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCc
Q 003474 394 NNVLDGLNMFD-GTDGHYFHSGSRG---YHWMWD--SRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTS 461 (817)
Q Consensus 394 ~~~~~~l~~fd-g~~~~yf~~~~~g---~~~~w~--~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~ 461 (817)
.... ....|+ +....|+-....+ ....|. ...+|+.||++++...+.++..++.+|||||-+|....
T Consensus 109 ~~~~-~~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~ 181 (441)
T PF01055_consen 109 NDSP-DYENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGVDGWWLDFGEP 181 (441)
T ss_dssp TTTT-B-HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST-SEEEEESTTT
T ss_pred CCCC-cchhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCCceEEeecCCc
Confidence 3321 000010 0111233322222 111243 46799999999999999999999988999999998543
No 90
>PRK10426 alpha-glucosidase; Provisional
Probab=95.46 E-value=0.16 Score=61.31 Aligned_cols=135 Identities=15% Similarity=0.127 Sum_probs=83.4
Q ss_pred HhhHhhhhhHHHHcCC--CEEEEcCcccCCCCCCCCCccc-cccCCC-CCCCCHHHHHHHHHHHHHcCcEEEEeeecccc
Q 003474 317 ANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVT-NFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSHA 392 (817)
Q Consensus 317 ~~~~~~~L~ylk~LGv--~~I~LmPi~e~~~~~s~GY~v~-dy~avd-~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~ 392 (817)
..+. +.+..+++.|| ++|||- -+....+.++|...- | |..| .+|- +.++||+++|++|++|++-+-+ |+
T Consensus 221 ~~v~-~v~~~~r~~~IP~d~i~ld-dw~~~~~~~~g~~~~~~-~~~d~~~FP---dp~~mi~~L~~~G~k~v~~i~P-~v 293 (635)
T PRK10426 221 EVVQ-KKLDTMRNAGVKVNGIWAQ-DWSGIRMTSFGKRLMWN-WKWDSERYP---QLDSRIKQLNEEGIQFLGYINP-YL 293 (635)
T ss_pred HHHH-HHHHHHHHcCCCeeEEEEe-ccccccccccccccccc-ceEChhhCC---CHHHHHHHHHHCCCEEEEEEcC-cc
Confidence 3455 68888999885 889985 222111223443221 2 2222 3453 4678999999999999998655 33
Q ss_pred CCCccccCcCC-CCCCCCccccCCCCC-----cccCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCcc
Q 003474 393 SNNVLDGLNMF-DGTDGHYFHSGSRGY-----HWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSM 462 (817)
Q Consensus 393 s~~~~~~l~~f-dg~~~~yf~~~~~g~-----~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m 462 (817)
..+.. .| ++....||..+..|. .|.+....+|+.||++++...+.++..+.+.|||||-.|.-..+
T Consensus 294 ~~~~~----~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~Gvdg~w~D~~E~~ 365 (635)
T PRK10426 294 ASDGD----LCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLGCSGWMADFGEYL 365 (635)
T ss_pred CCCCH----HHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcCCCEEeeeCCCCC
Confidence 32221 11 112233444333221 12333457999999999999999877676699999999986644
No 91
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=95.37 E-value=0.068 Score=58.61 Aligned_cols=117 Identities=15% Similarity=0.132 Sum_probs=76.5
Q ss_pred HHHHHHHHcCcEEEEeeeccccCCCccccCcCCCCCCCCcccc--------CCCCCcccC-CCCCCCCCCHHHHHHHHHH
Q 003474 371 SLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHS--------GSRGYHWMW-DSRLFNYGSWEVLRFLLSN 441 (817)
Q Consensus 371 ~LV~~aH~~GI~VIlDvV~NH~s~~~~~~l~~fdg~~~~yf~~--------~~~g~~~~w-~~~~ln~~~peV~~~l~~~ 441 (817)
+=|+++|+.|.+||-=+-+.-.-.. ..||.. .-.+....| ++..+|+.+++.+++|++-
T Consensus 85 ~~i~~Lk~~g~~viaYlSvGe~E~~------------R~y~~~~~~~~~~~~l~~~n~~W~g~~~vd~~~~~W~~il~~r 152 (315)
T TIGR01370 85 EEIVRAAAAGRWPIAYLSIGAAEDY------------RFYWQKGWKVNAPAWLGNEDPDWPGNYDVKYWDPEWKAIAFSY 152 (315)
T ss_pred HHHHHHHhCCcEEEEEEEchhcccc------------chhhhhhhhcCCHHHhCCCCCCCCCceeEecccHHHHHHHHHH
Confidence 4456778899888754443321111 122221 112455678 7889999999999999998
Q ss_pred HHHHHHhCCccEEEEecCCccccccc-CccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCEEEEE
Q 003474 442 ARWWLEEYKFDGFRFDGVTSMMYTHH-GLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIG 511 (817)
Q Consensus 442 l~~Wl~e~gvDGfR~D~v~~m~~~~~-g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~~~v~~~~P~~~~Ig 511 (817)
+...++ .|+|||-+|.+....+... +. .+ .....+-+.|++.+.+.+|+.+|++++|.
T Consensus 153 l~~l~~-kGfDGvfLD~lDsy~~~~~~~~----------~~-~~~~~~m~~~i~~Ia~~ar~~~P~~~II~ 211 (315)
T TIGR01370 153 LDRVIA-QGFDGVYLDLIDAFEYWAENGD----------NR-PGAAAEMIAFVCEIAAYARAQNPQFVIIP 211 (315)
T ss_pred HHHHHH-cCCCeEeeccchhhhhhcccCC----------cc-hhhHHHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 877666 7999999999876532110 00 00 00112346899999999999999999884
No 92
>PF11852 DUF3372: Domain of unknown function (DUF3372); InterPro: IPR024561 This entry represents the uncharacterised C-terminal domain of secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyse alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. ; PDB: 2Y4S_A 2FH8_A 2FH6_A 2Y5E_A 2FHC_A 2FHB_A 2FHF_A 2FGZ_A.
Probab=94.92 E-value=0.043 Score=54.41 Aligned_cols=52 Identities=17% Similarity=0.208 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCC-----cEEEeeecC----CCcEEEEEc--------------CcEEEEEEcCC
Q 003474 688 RGMQEFDRAMQHLEEKYGFMTSE-----HQYVSRKDE----GDRVIVFER--------------GNLVFVFNFHW 739 (817)
Q Consensus 688 ~~l~~f~r~Li~LR~~~~~l~~g-----~~~i~~~~~----~~~Vlaf~R--------------~~llvV~Nf~~ 739 (817)
....+++++|++||+++|+++-+ .+-+.+.+. ..+||++.- +.++||||-++
T Consensus 41 ~~a~~~f~elL~iR~SspLFrL~ta~~I~~rv~F~n~G~~q~pGvIvM~idDg~~~~~dlD~~~~~iVVvfNat~ 115 (168)
T PF11852_consen 41 AAASAYFQELLRIRKSSPLFRLGTAEEIQQRVTFHNTGPDQTPGVIVMSIDDGAGVGADLDPNYDGIVVVFNATP 115 (168)
T ss_dssp HHHHHHHHHHHHHHCT-GGGG--SHHHHHHHEEEES-STT--TTEEEEEEE-SCSSSS-S-SSEEEEEEEEE-SS
T ss_pred HHHHHHHHHHHHHhccCccccCCCHHHHHHhccccCCCCCCCCcEEEEEecCCCccccccCCccCeEEEEEeCCC
Confidence 46689999999999999988643 112223332 366888875 24999999996
No 93
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=94.34 E-value=0.85 Score=51.07 Aligned_cols=176 Identities=15% Similarity=0.091 Sum_probs=98.8
Q ss_pred HhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCC-------CCCCCHHHHHHHHHHHHHcCcEEEEee-e
Q 003474 317 ANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPS-------SRCGTPDDLKSLIDKAHELGLLVLMDI-V 388 (817)
Q Consensus 317 ~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd-------~~~Gt~edlk~LV~~aH~~GI~VIlDv-V 388 (817)
..|. +.|+.+..+.+|.++|== ..+.+|.+....|=.+. ..|=|.+|+|+||+-|.++||.||-.+ +
T Consensus 18 ~~ik-~~Id~ma~~KlN~lh~Hl----tDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEID~ 92 (348)
T cd06562 18 DSIK-RTIDAMAYNKLNVLHWHI----TDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEIDT 92 (348)
T ss_pred HHHH-HHHHHHHHhCCcEEEEeE----EcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEeccC
Confidence 4454 678889999999988620 01112333332222211 112289999999999999999999999 5
Q ss_pred ccccCCCc--cccCcCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCcccccc
Q 003474 389 HSHASNNV--LDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTH 466 (817)
Q Consensus 389 ~NH~s~~~--~~~l~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~ 466 (817)
+.|+..-. ...+.. .+ ..++.... ..-....||..+|++.+++.+++.-.++-|... +-|
T Consensus 93 PGH~~a~~~~~p~l~~-~~--~~~~~~~~----~~~~~~~L~~~~~~t~~fl~~vl~E~~~lF~~~-----------~iH 154 (348)
T cd06562 93 PGHTGSWGQGYPELLT-GC--YAVWRKYC----PEPPCGQLNPTNPKTYDFLKTLFKEVSELFPDK-----------YFH 154 (348)
T ss_pred chhhHHHHHhChhhhC-CC--Cccccccc----cCCCCccccCCChhHHHHHHHHHHHHHHhcCCc-----------ceE
Confidence 88885421 000000 00 00000000 001123689999999999999999999855411 112
Q ss_pred cCccccccCCccc---------ccCcccChhH--HHHHHHHHHHhhccCCCEEEEEecCCC
Q 003474 467 HGLQVAFTGNYSE---------YFGFATDVDA--VVYLMLVNDMIHGLYPEAVSIGEDVSG 516 (817)
Q Consensus 467 ~g~~~~f~~~~~~---------~~g~~~~~~a--~~fl~~~~~~v~~~~P~~~~IgE~~~~ 516 (817)
-|-+..+.+.|.. ..|. .+... ..|++.+.+.+++.....++-.|...+
T Consensus 155 iGgDE~~~~~w~~~p~~~~~m~~~g~-~~~~~l~~~f~~~~~~~l~~~Gk~~i~W~d~~~~ 214 (348)
T cd06562 155 LGGDEVNFNCWNSNPEIQKFMKKNNG-TDYSDLESYFIQRALDIVRSLGKTPIVWEEVFDN 214 (348)
T ss_pred eecCCCCCCcccCCHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHcCCeEEEeeecccC
Confidence 2222222222211 0011 11112 258889999999887777777776544
No 94
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=94.24 E-value=0.18 Score=54.99 Aligned_cols=129 Identities=14% Similarity=0.128 Sum_probs=72.4
Q ss_pred CHHhhHhhhhhHHHHcCC--CEEEEcCcccCC----CCCCCCCccccccCCC-CCCCCHHHHHHHHHHHHHcCcEEEEee
Q 003474 315 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHS----YYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDI 387 (817)
Q Consensus 315 ~~~~~~~~~L~ylk~LGv--~~I~LmPi~e~~----~~~s~GY~v~dy~avd-~~~Gt~edlk~LV~~aH~~GI~VIlDv 387 (817)
+-.++. +.+..+++.|| ++|+|=-=+-.. .+. -+|. -|..| .+|-. .++||+++|++|++||+-+
T Consensus 23 s~~ev~-~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~-~~~~---~ft~d~~~FPd---p~~mi~~Lh~~G~k~v~~v 94 (292)
T cd06595 23 SDEEYL-ALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYG-SGWT---GYSWNRKLFPD---PEKLLQDLHDRGLKVTLNL 94 (292)
T ss_pred CHHHHH-HHHHHHHHhCCCccEEEEeccccccccccccc-CCcc---eeEEChhcCCC---HHHHHHHHHHCCCEEEEEe
Confidence 445665 57888888777 677762211100 000 0111 13344 36644 5899999999999999988
Q ss_pred eccccCCCccccCcCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecC
Q 003474 388 VHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGV 459 (817)
Q Consensus 388 V~NH~s~~~~~~l~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v 459 (817)
.+......... .|+. +..........-+...+|+.||+.++...+.++.-+.+.|||||-.|.-
T Consensus 95 ~P~~~~~~~~~---~y~~-----~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg~W~D~~ 158 (292)
T cd06595 95 HPADGIRAHED---QYPE-----MAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQGVDFWWLDWQ 158 (292)
T ss_pred CCCcccCCCcH---HHHH-----HHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcCCcEEEecCC
Confidence 76432111100 0000 0000000000001136799999999987777766666699999999953
No 95
>PRK10658 putative alpha-glucosidase; Provisional
Probab=93.93 E-value=0.08 Score=64.07 Aligned_cols=126 Identities=11% Similarity=0.238 Sum_probs=79.7
Q ss_pred hhHhhhhhHHHHcCC--CEEEEcCcccCCCCCCCCCccccccCCC-CCCCCHHHHHHHHHHHHHcCcEEEEeeeccccCC
Q 003474 318 NFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASN 394 (817)
Q Consensus 318 ~~~~~~L~ylk~LGv--~~I~LmPi~e~~~~~s~GY~v~dy~avd-~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~s~ 394 (817)
.+. +.++.+++.|+ ++|+|=..+-. +|+-.+ |..| .+|-. .+.||+++|++|++|++-+.+ ++..
T Consensus 284 ~v~-~~~~~~r~~~iP~d~i~lD~~w~~------~~~~~~-f~wd~~~FPd---p~~mi~~L~~~G~k~~~~i~P-~i~~ 351 (665)
T PRK10658 284 TVN-SFIDGMAERDLPLHVFHFDCFWMK------EFQWCD-FEWDPRTFPD---PEGMLKRLKAKGLKICVWINP-YIAQ 351 (665)
T ss_pred HHH-HHHHHHHHcCCCceEEEEchhhhc------CCceee-eEEChhhCCC---HHHHHHHHHHCCCEEEEeccC-CcCC
Confidence 344 56777888777 56665433211 121123 2333 35544 467999999999999997655 3443
Q ss_pred CccccCcCC-CCCCCCccccCCCCCccc---C--CCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCC
Q 003474 395 NVLDGLNMF-DGTDGHYFHSGSRGYHWM---W--DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 460 (817)
Q Consensus 395 ~~~~~l~~f-dg~~~~yf~~~~~g~~~~---w--~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~ 460 (817)
++. .| .+....||-...+|..+. | +...+|+.||++++...+.++.+++ .|||||-.|...
T Consensus 352 ~s~----~f~e~~~~gy~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d-~Gvdgfw~D~gE 418 (665)
T PRK10658 352 KSP----LFKEGKEKGYLLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLLD-MGVDCFKTDFGE 418 (665)
T ss_pred Cch----HHHHHHHCCeEEECCCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHHh-cCCcEEEecCCc
Confidence 321 11 122334555444443322 2 3467999999999999999999887 899999999654
No 96
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=93.83 E-value=0.79 Score=50.84 Aligned_cols=162 Identities=15% Similarity=0.236 Sum_probs=94.3
Q ss_pred HHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccc--------------------c--CCCCCCCCHHHHHHHH
Q 003474 316 YANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNF--------------------F--APSSRCGTPDDLKSLI 373 (817)
Q Consensus 316 ~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy--------------------~--avd~~~Gt~edlk~LV 373 (817)
...|. +.|+.+..+++|.++|= -.+ +|++.+..+ . .....+=|.+|+|+||
T Consensus 16 ~~~ik-~~id~ma~~K~N~lhlH-----ltD-~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv 88 (326)
T cd06564 16 MDFLK-DIIKTMSWYKMNDLQLH-----LND-NLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELI 88 (326)
T ss_pred HHHHH-HHHHHHHHcCCceEEEe-----ecC-CcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHH
Confidence 34455 68899999999999871 000 122211111 0 1112233899999999
Q ss_pred HHHHHcCcEEEEee-eccccCCCccccCcCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhCC--
Q 003474 374 DKAHELGLLVLMDI-VHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYK-- 450 (817)
Q Consensus 374 ~~aH~~GI~VIlDv-V~NH~s~~~~~~l~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~g-- 450 (817)
+-|.++||.||-.+ ++.|+..- +..+. .+.... .........||..+|++.+++.+.+.-.++-|.
T Consensus 89 ~yA~~rgI~vIPEID~PGH~~a~----~~~~p-----el~~~~--~~~~~~~~~l~~~~~~t~~f~~~l~~E~~~~f~~~ 157 (326)
T cd06564 89 AYAKDRGVNIIPEIDSPGHSLAF----TKAMP-----ELGLKN--PFSKYDKDTLDISNPEAVKFVKALFDEYLDGFNPK 157 (326)
T ss_pred HHHHHcCCeEeccCCCcHHHHHH----HHhhH-----HhcCCC--cccCCCcccccCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999988 58887531 11110 000000 000112247899999999999999999998554
Q ss_pred ccEEEEecCCcccccccCccccccCCcccccCcccChhH-HHHHHHHHHHhhccCCCEEEEEecC
Q 003474 451 FDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDA-VVYLMLVNDMIHGLYPEAVSIGEDV 514 (817)
Q Consensus 451 vDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a-~~fl~~~~~~v~~~~P~~~~IgE~~ 514 (817)
-+=| |-|-+ |+.......+. ..|++.+.+.+++.....++-.|..
T Consensus 158 ~~~~-----------HiGgD--------E~~~~~~~~~~~~~f~~~~~~~v~~~gk~~~~W~d~~ 203 (326)
T cd06564 158 SDTV-----------HIGAD--------EYAGDAGYAEAFRAYVNDLAKYVKDKGKTPRVWGDGI 203 (326)
T ss_pred CCEE-----------Eeccc--------cccccCccHHHHHHHHHHHHHHHHHcCCeEEEeCCcc
Confidence 1111 11221 11111111222 3789999999988866666555543
No 97
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=93.66 E-value=0.12 Score=57.15 Aligned_cols=132 Identities=10% Similarity=0.111 Sum_probs=77.8
Q ss_pred CHHhhHhhhhhHHHHcCC--CEEEEcCcccCCCCCCCCCccccccCCC-CCCCCHHHHHHHHHHHHHcCcEEEEeeeccc
Q 003474 315 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 391 (817)
Q Consensus 315 ~~~~~~~~~L~ylk~LGv--~~I~LmPi~e~~~~~s~GY~v~dy~avd-~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH 391 (817)
+-..+. +.++.+++.|| ++|+|=.=+-........|. + |..+ .+|-.| ++||+.+|++|++|++-+.+ +
T Consensus 22 ~~~~v~-~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~--~-f~wd~~~FPdp---~~mi~~L~~~G~k~~~~v~P-~ 93 (317)
T cd06598 22 NWQEVD-DTIKTLREKDFPLDAAILDLYWFGKDIDKGHMG--N-LDWDRKAFPDP---AGMIADLAKKGVKTIVITEP-F 93 (317)
T ss_pred CHHHHH-HHHHHHHHhCCCceEEEEechhhcCcccCCcee--e-eEeccccCCCH---HHHHHHHHHcCCcEEEEEcC-c
Confidence 334555 57888888886 67776432210000000111 1 3333 466554 68999999999999998753 3
Q ss_pred cCCCccccCcCC-CCCCCCc-cccCCCC-----CcccCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecC
Q 003474 392 ASNNVLDGLNMF-DGTDGHY-FHSGSRG-----YHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGV 459 (817)
Q Consensus 392 ~s~~~~~~l~~f-dg~~~~y-f~~~~~g-----~~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v 459 (817)
+..++. .| .+....| +.....+ ..|......+|+.||++++...+.++..++ .|||||-+|.-
T Consensus 94 v~~~~~----~y~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~Gvdg~w~D~~ 163 (317)
T cd06598 94 VLKNSK----NWGEAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKLID-QGVTGWWGDLG 163 (317)
T ss_pred ccCCch----hHHHHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHhhh-CCccEEEecCC
Confidence 333321 11 1111223 2222111 122234567899999999999999988755 89999999975
No 98
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=93.49 E-value=0.34 Score=54.47 Aligned_cols=85 Identities=12% Similarity=0.037 Sum_probs=59.0
Q ss_pred HHHHHHHHHcCcEEEEeeeccccCCCccccCcCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhC
Q 003474 370 KSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEY 449 (817)
Q Consensus 370 k~LV~~aH~~GI~VIlDvV~NH~s~~~~~~l~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~ 449 (817)
++|+..||++|++|++.. + + + .-...+++.|+.+++++.-+++++
T Consensus 67 ~~~~~~A~~~~v~v~~~~-------~-------~----~-----------------~~~l~~~~~R~~fi~siv~~~~~~ 111 (358)
T cd02875 67 DELLCYAHSKGVRLVLKG-------D-------V----P-----------------LEQISNPTYRTQWIQQKVELAKSQ 111 (358)
T ss_pred HHHHHHHHHcCCEEEEEC-------c-------c----C-----------------HHHcCCHHHHHHHHHHHHHHHHHh
Confidence 489999999999999641 0 0 0 002457899999999999999999
Q ss_pred CccEEEEecCCcccccccCccccccCCcccccCcccChhH-HHHHHHHHHHhhccCCCE
Q 003474 450 KFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDA-VVYLMLVNDMIHGLYPEA 507 (817)
Q Consensus 450 gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a-~~fl~~~~~~v~~~~P~~ 507 (817)
|+||+-+|-=.-. . ....+.+. ..|++++++.+++..++.
T Consensus 112 gfDGIdIDwE~p~-------------~-----~~~~d~~~~t~llkelr~~l~~~~~~~ 152 (358)
T cd02875 112 FMDGINIDIEQPI-------------T-----KGSPEYYALTELVKETTKAFKKENPGY 152 (358)
T ss_pred CCCeEEEcccCCC-------------C-----CCcchHHHHHHHHHHHHHHHhhcCCCc
Confidence 9999999952110 0 00122233 479999999998876543
No 99
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=93.07 E-value=0.96 Score=49.62 Aligned_cols=167 Identities=15% Similarity=0.090 Sum_probs=96.5
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCC-----------CCCCCHHHHHHHHHHHHHcCcEE
Q 003474 315 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPS-----------SRCGTPDDLKSLIDKAHELGLLV 383 (817)
Q Consensus 315 ~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd-----------~~~Gt~edlk~LV~~aH~~GI~V 383 (817)
+...|. +.|+.+..+++|.++|==. ...+|.+....|=.+. ..+=|.+|+++||+-|.++||.|
T Consensus 14 ~~~~lk-~~id~ma~~K~N~lhlHl~----D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~v 88 (303)
T cd02742 14 SVESIK-RTIDVLARYKINTFHWHLT----DDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEV 88 (303)
T ss_pred CHHHHH-HHHHHHHHhCCcEEEEeee----cCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEE
Confidence 445555 6889999999999876211 1112333322222111 12337899999999999999999
Q ss_pred EEee-eccccCCCccccCcCCCC-CCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCc
Q 003474 384 LMDI-VHSHASNNVLDGLNMFDG-TDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTS 461 (817)
Q Consensus 384 IlDv-V~NH~s~~~~~~l~~fdg-~~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~ 461 (817)
|-.+ ++.|+..-- ..+.. ...++- +..+.-....||..+|++.+++.+.+.-+++-|. ..
T Consensus 89 iPEiD~PGH~~a~~----~~~p~l~~~~~~-----~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~lf~--------~~- 150 (303)
T cd02742 89 IPEIDMPGHSTAFV----KSFPKLLTECYA-----GLKLRDVFDPLDPTLPKGYDFLDDLFGEIAELFP--------DR- 150 (303)
T ss_pred EEeccchHHHHHHH----HhCHHhccCccc-----cCCCCCCCCccCCCCccHHHHHHHHHHHHHHhCC--------CC-
Confidence 9998 588885321 11100 000110 0001111246899999999999999999998441 11
Q ss_pred ccccccCccccccCCcccccCcccChh-HHHHHHHHHHHhhccCCCEEEEEecC
Q 003474 462 MMYTHHGLQVAFTGNYSEYFGFATDVD-AVVYLMLVNDMIHGLYPEAVSIGEDV 514 (817)
Q Consensus 462 m~~~~~g~~~~f~~~~~~~~g~~~~~~-a~~fl~~~~~~v~~~~P~~~~IgE~~ 514 (817)
+-|-|-+ |.+......+ -..|++.+.+.+++.....++-+|..
T Consensus 151 --~iHiGgD--------E~~~~~~~~~l~~~f~~~~~~~v~~~g~~~~~W~d~~ 194 (303)
T cd02742 151 --YLHIGGD--------EAHFKQDRKHLMSQFIQRVLDIVKKKGKKVIVWQDGF 194 (303)
T ss_pred --eEEecce--------ecCCCCCHHHHHHHHHHHHHHHHHHcCCeEEEecccc
Confidence 1111221 1111111111 24788999999988876666666544
No 100
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=92.77 E-value=0.74 Score=51.02 Aligned_cols=147 Identities=17% Similarity=0.137 Sum_probs=78.5
Q ss_pred hhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeeccccCCCccccC
Q 003474 321 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGL 400 (817)
Q Consensus 321 ~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~l 400 (817)
.+.+..||+.|+|+|-|=- +-.|.. .-+-+.+...+|.++|+++||+|+||+=++.+-.+-
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv~P~~--------------~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDP---- 87 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WVNPYD--------------GGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADP---- 87 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--SS-TT--------------TTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BT----
T ss_pred CCHHHHHHhcCCCeEEEEe-ccCCcc--------------cccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCC----
Confidence 3689999999999998643 333431 445678999999999999999999999766543221
Q ss_pred cCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCcccccccCccccccCCcccc
Q 003474 401 NMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEY 480 (817)
Q Consensus 401 ~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~ 480 (817)
| .+ .-...|....++--...|.+|-.++|....+ .|+. .|.|.- .. .+..++-...
T Consensus 88 ----g--~Q-------~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~-~G~~---pd~VQV-GN---Ein~Gmlwp~--- 143 (332)
T PF07745_consen 88 ----G--KQ-------NKPAAWANLSFDQLAKAVYDYTKDVLQALKA-AGVT---PDMVQV-GN---EINNGMLWPD--- 143 (332)
T ss_dssp ----T--B--------B--TTCTSSSHHHHHHHHHHHHHHHHHHHHH-TT-----ESEEEE-SS---SGGGESTBTT---
T ss_pred ----C--CC-------CCCccCCCCCHHHHHHHHHHHHHHHHHHHHH-CCCC---ccEEEe-Cc---cccccccCcC---
Confidence 0 00 0112344333333335566777777777665 4554 665531 10 0111111110
Q ss_pred cCcccChhH-HHHHHHHHHHhhccCCCEEEEE
Q 003474 481 FGFATDVDA-VVYLMLVNDMIHGLYPEAVSIG 511 (817)
Q Consensus 481 ~g~~~~~~a-~~fl~~~~~~v~~~~P~~~~Ig 511 (817)
|...+.+. ..+|+...++|++..|++.++-
T Consensus 144 -g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~l 174 (332)
T PF07745_consen 144 -GKPSNWDNLAKLLNAGIKAVREVDPNIKVML 174 (332)
T ss_dssp -TCTT-HHHHHHHHHHHHHHHHTHSSTSEEEE
T ss_pred -CCccCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 11233333 3577777788999888865553
No 101
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=92.74 E-value=0.41 Score=50.98 Aligned_cols=64 Identities=22% Similarity=0.252 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHHcCcEEEEeeeccccCCCccccCcCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 003474 365 TPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARW 444 (817)
Q Consensus 365 t~edlk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~l~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~l~~~l~~ 444 (817)
+.+++++.|..+|++|+||++=+--+|.+.. | ....+++-++.+++++.-
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~-------~-----------------------~~~~~~~~~~~fa~~l~~ 98 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGAG-------F-----------------------ANNLSDAAAKAYAKAIVD 98 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCCC-------c-----------------------cccCCHHHHHHHHHHHHH
Confidence 4789999999999999999998765544321 0 011235566777778888
Q ss_pred HHHhCCccEEEEec
Q 003474 445 WLEEYKFDGFRFDG 458 (817)
Q Consensus 445 Wl~e~gvDGfR~D~ 458 (817)
+++.||+||+=+|-
T Consensus 99 ~v~~yglDGiDiD~ 112 (255)
T cd06542 99 TVDKYGLDGVDFDD 112 (255)
T ss_pred HHHHhCCCceEEee
Confidence 88889999999994
No 102
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=92.50 E-value=0.43 Score=58.62 Aligned_cols=86 Identities=20% Similarity=0.322 Sum_probs=59.9
Q ss_pred HHHHHHHHcCcEEEEeeeccccCCCccccCcCC-CCCCCCccccCCCCCc-----ccCCCCCCCCCCHHHHHHHHHHH-H
Q 003474 371 SLIDKAHELGLLVLMDIVHSHASNNVLDGLNMF-DGTDGHYFHSGSRGYH-----WMWDSRLFNYGSWEVLRFLLSNA-R 443 (817)
Q Consensus 371 ~LV~~aH~~GI~VIlDvV~NH~s~~~~~~l~~f-dg~~~~yf~~~~~g~~-----~~w~~~~ln~~~peV~~~l~~~l-~ 443 (817)
+||+.+|++||++|.=+.|.=..... .| ......||..+..|.. |...+.-+||.||++|+...+.. .
T Consensus 325 ~mi~~l~~~Gikl~~~i~P~i~~d~~-----~~~e~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~ 399 (772)
T COG1501 325 QMIAELHEKGIKLIVIINPYIKQDSP-----LFKEAIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWASDKKK 399 (772)
T ss_pred HHHHHHHhcCceEEEEeccccccCCc-----hHHHHHHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHHHHHHh
Confidence 99999999999999987764332221 11 1223456665555433 22235789999999999999644 5
Q ss_pred HHHHhCCccEEEEecCCcc
Q 003474 444 WWLEEYKFDGFRFDGVTSM 462 (817)
Q Consensus 444 ~Wl~e~gvDGfR~D~v~~m 462 (817)
.+++ +|||||-.|.-.-.
T Consensus 400 ~l~d-~Gv~g~W~D~nEp~ 417 (772)
T COG1501 400 NLLD-LGVDGFWNDMNEPE 417 (772)
T ss_pred HHHh-cCccEEEccCCCCc
Confidence 5666 99999999987654
No 103
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=92.39 E-value=4.6 Score=49.26 Aligned_cols=67 Identities=22% Similarity=0.257 Sum_probs=46.3
Q ss_pred CCCCCCCCC-----HHHHHHHHHHHHHHHHhCCccEEEEecCCcccccccCccccccCCcccccCcccChhHHHHHHHHH
Q 003474 423 DSRLFNYGS-----WEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVN 497 (817)
Q Consensus 423 ~~~~ln~~~-----peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~ 497 (817)
|+..|+|+| |-++++|......=.+ =+||+|+|..++-. +..-..+-
T Consensus 497 DsVKLryG~kpeDsPyLWq~M~kY~e~tAr--iFdG~RlDNcHsTP--------------------------lHVaEylL 548 (1521)
T KOG3625|consen 497 DSVKLRYGNKPEDSPYLWQHMKKYTEITAR--IFDGVRLDNCHSTP--------------------------LHVAEYLL 548 (1521)
T ss_pred ceeeeccCCCcccChHHHHHHHHHHHHHHH--HhcceeeccCCCCc--------------------------hhHHHHHH
Confidence 457899975 6677777766554444 58999999986541 11222334
Q ss_pred HHhhccCCCEEEEEecCCCC
Q 003474 498 DMIHGLYPEAVSIGEDVSGM 517 (817)
Q Consensus 498 ~~v~~~~P~~~~IgE~~~~~ 517 (817)
++.++.+|+.+++||-+++.
T Consensus 549 d~ARk~nPnlYVvAELFtgS 568 (1521)
T KOG3625|consen 549 DAARKLNPNLYVVAELFTGS 568 (1521)
T ss_pred HHHHhcCCCeEEEeeeccCC
Confidence 55678899999999998764
No 104
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=91.32 E-value=0.54 Score=41.97 Aligned_cols=58 Identities=21% Similarity=0.395 Sum_probs=40.0
Q ss_pred EEEEEecC--CcCEEEEEe---ecCCCCCc-ccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCC
Q 003474 185 ITYREWAP--GAKSASLIG---DFNNWNPN-ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTP 248 (817)
Q Consensus 185 v~fr~WAP--~A~~V~Lvg---dFN~W~~~-~~pm~r~~~GvWei~lp~~~~g~~~~~~g~~yk~~~~~~ 248 (817)
++|++=+. -.+.|.|+| ++++|+.. +.+|+..+.+.|++.+.-.. +. ...|||.+...
T Consensus 3 v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~~-~~-----~~eYKy~~~~~ 66 (95)
T cd05808 3 VTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLPA-GT-----AIEYKYIKKDG 66 (95)
T ss_pred EEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeCC-CC-----eEEEEEEEECC
Confidence 45655432 357999999 48899975 57998888899988875322 11 25788876543
No 105
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=91.25 E-value=0.5 Score=52.51 Aligned_cols=108 Identities=15% Similarity=0.182 Sum_probs=70.8
Q ss_pred HHhhHhhhhhHHHHcCC--CEEEEcCcccCCCCCCCCCccccccCCC-CCCCCHHHHHHHHHHHHHcCcEEEEeeecccc
Q 003474 316 YANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSHA 392 (817)
Q Consensus 316 ~~~~~~~~L~ylk~LGv--~~I~LmPi~e~~~~~s~GY~v~dy~avd-~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~ 392 (817)
-..+. +.+..+++.+| ++|||=.=+. . +|. .|..+ .+|-.| ++||+++|++|++||+-+.+- +
T Consensus 23 ~~ev~-~v~~~~r~~~IP~D~i~lDidy~----~--~~~---~Ft~d~~~FPdp---~~mv~~L~~~G~klv~~i~P~-i 88 (332)
T cd06601 23 RSDLE-EVVEGYRDNNIPLDGLHVDVDFQ----D--NYR---TFTTNGGGFPNP---KEMFDNLHNKGLKCSTNITPV-I 88 (332)
T ss_pred HHHHH-HHHHHHHHcCCCCceEEEcCchh----c--CCC---ceeecCCCCCCH---HHHHHHHHHCCCeEEEEecCc-e
Confidence 34454 56777777776 7787654221 1 221 24444 467555 689999999999999987542 2
Q ss_pred CCCccccCcCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCC
Q 003474 393 SNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 460 (817)
Q Consensus 393 s~~~~~~l~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~ 460 (817)
.. | ..+.+...-.|+.||+++++-.+..+.+.+ .|||||-.|.-.
T Consensus 89 ~~----------g------------~~~~~~~~~pDftnp~ar~wW~~~~~~l~~-~Gv~~~W~DmnE 133 (332)
T cd06601 89 SY----------G------------GGLGSPGLYPDLGRPDVREWWGNQYKYLFD-IGLEFVWQDMTT 133 (332)
T ss_pred ec----------C------------ccCCCCceeeCCCCHHHHHHHHHHHHHHHh-CCCceeecCCCC
Confidence 10 0 011122235688999999998888888887 799999999753
No 106
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=90.75 E-value=3.8 Score=45.58 Aligned_cols=167 Identities=15% Similarity=0.122 Sum_probs=95.7
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCC------------CCCCCHHHHHHHHHHHHHcCcE
Q 003474 315 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPS------------SRCGTPDDLKSLIDKAHELGLL 382 (817)
Q Consensus 315 ~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd------------~~~Gt~edlk~LV~~aH~~GI~ 382 (817)
+...|. +.||.+...++|.++|=-.= ..+|......|=.+. ..|=|.+|+++||+-|.++||.
T Consensus 16 ~~~~lk-~~id~ma~~KlN~lhlHLtD----~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~ 90 (329)
T cd06568 16 TVAEVK-RYIDLLALYKLNVLHLHLTD----DQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHIT 90 (329)
T ss_pred CHHHHH-HHHHHHHHhCCcEEEEEeec----CCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCE
Confidence 344555 68899999999998873211 112333333321111 1233799999999999999999
Q ss_pred EEEee-eccccCCCcc--ccCcCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecC
Q 003474 383 VLMDI-VHSHASNNVL--DGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGV 459 (817)
Q Consensus 383 VIlDv-V~NH~s~~~~--~~l~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v 459 (817)
||-.+ ++.|+..--. ..+.. .+.....+. ........||..+|++.+++.+.+.-.++-|--.
T Consensus 91 vIPEiD~PGH~~a~~~~~p~l~~-~~~~~~~~~------~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~f~~~------- 156 (329)
T cd06568 91 VVPEIDMPGHTNAALAAYPELNC-DGKAKPLYT------GIEVGFSSLDVDKPTTYEFVDDVFRELAALTPGP------- 156 (329)
T ss_pred EEEecCCcHHHHHHHHhChhhcc-CCCCCcccc------ccCCCCcccCCCCHHHHHHHHHHHHHHHHhCCCC-------
Confidence 99998 5888753110 00111 111111110 1111234689999999999999999888743211
Q ss_pred CcccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCEEEEEec
Q 003474 460 TSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGED 513 (817)
Q Consensus 460 ~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~~~v~~~~P~~~~IgE~ 513 (817)
+-|-|-+ |..... ...-..|++.+.+.+++.....++-.|.
T Consensus 157 ----~iHiGgD--------E~~~~~-~~~~~~f~~~~~~~v~~~Gk~~~~W~d~ 197 (329)
T cd06568 157 ----YIHIGGD--------EAHSTP-HDDYAYFVNRVRAIVAKYGKTPVGWQEI 197 (329)
T ss_pred ----eEEEecc--------cCCCCc-hHHHHHHHHHHHHHHHHCCCeEEEECcc
Confidence 1122221 111111 1122368999999998876655555554
No 107
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=90.74 E-value=0.39 Score=53.54 Aligned_cols=129 Identities=14% Similarity=0.141 Sum_probs=78.6
Q ss_pred CHHhhHhhhhhHHHHcCC--CEEEEcCcccCCCCCCCCCccccccCCCC-CCCCHHHHHHHHHHHHHcCcEEEEeeeccc
Q 003474 315 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDIVHSH 391 (817)
Q Consensus 315 ~~~~~~~~~L~ylk~LGv--~~I~LmPi~e~~~~~s~GY~v~dy~avd~-~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH 391 (817)
+-.++. +.+..+++.|| ++|+|=.=+. .+|. .|..++ +|- +.++||+++|++|++|++-+.+-
T Consensus 22 ~~~ev~-~~~~~~~~~~iP~d~i~lD~~~~------~~~~---~f~~d~~~FP---dp~~mi~~L~~~G~k~~~~~~P~- 87 (339)
T cd06603 22 DQEDVK-EVDAGFDEHDIPYDVIWLDIEHT------DGKR---YFTWDKKKFP---DPEKMQEKLASKGRKLVTIVDPH- 87 (339)
T ss_pred CHHHHH-HHHHHHHHcCCCceEEEEChHHh------CCCC---ceEeCcccCC---CHHHHHHHHHHCCCEEEEEecCc-
Confidence 344555 57788888776 6676642211 1222 144444 665 44789999999999999987643
Q ss_pred cCCCccccCcCC-CCCCCCccccCCCCC---cccC--CCCCCCCCCHHHHHHHHHHHHHHHH--hCCccEEEEecC
Q 003474 392 ASNNVLDGLNMF-DGTDGHYFHSGSRGY---HWMW--DSRLFNYGSWEVLRFLLSNARWWLE--EYKFDGFRFDGV 459 (817)
Q Consensus 392 ~s~~~~~~l~~f-dg~~~~yf~~~~~g~---~~~w--~~~~ln~~~peV~~~l~~~l~~Wl~--e~gvDGfR~D~v 459 (817)
+..+. ....| .+....||.....+. ...| ....+|+.||++++...+.++..+. ..++|||-+|..
T Consensus 88 v~~~~--~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~~ 161 (339)
T cd06603 88 IKRDD--GYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWNDMN 161 (339)
T ss_pred eecCC--CCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCCCceEEeccC
Confidence 32221 00001 112223443332221 1123 2357999999999999999998886 468999999964
No 108
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=90.73 E-value=2.1 Score=45.65 Aligned_cols=87 Identities=16% Similarity=0.227 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHcCcEEEEeeeccccCCCccccCcCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHH
Q 003474 366 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWW 445 (817)
Q Consensus 366 ~edlk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~l~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~l~~~l~~W 445 (817)
+.++..++++||++|++|++=|- ++.. .. | .--..+++.|+.+++++.-+
T Consensus 45 ~~~~~~~~~~~~~~~~kvl~sig-g~~~--------------~~-~--------------~~~~~~~~~r~~fi~~lv~~ 94 (253)
T cd06545 45 RSELNSVVNAAHAHNVKILISLA-GGSP--------------PE-F--------------TAALNDPAKRKALVDKIINY 94 (253)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEc-CCCC--------------Cc-c--------------hhhhcCHHHHHHHHHHHHHH
Confidence 46789999999999999998542 2110 00 0 00235688899999999999
Q ss_pred HHhCCccEEEEecCCcccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhcc
Q 003474 446 LEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGL 503 (817)
Q Consensus 446 l~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~~~v~~~ 503 (817)
+++||+||+=+|-=... . ....-..|++++++.+++.
T Consensus 95 ~~~~~~DGIdiDwE~~~--------------------~-~~~~~~~fv~~Lr~~l~~~ 131 (253)
T cd06545 95 VVSYNLDGIDVDLEGPD--------------------V-TFGDYLVFIRALYAALKKE 131 (253)
T ss_pred HHHhCCCceeEEeeccC--------------------c-cHhHHHHHHHHHHHHHhhc
Confidence 99999999999952110 0 0112346899999999764
No 109
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=89.80 E-value=4.4 Score=44.41 Aligned_cols=167 Identities=17% Similarity=0.112 Sum_probs=95.8
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEEcC--cccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEee-eccc
Q 003474 315 TYANFRDDVLPRIKRLGYNAVQIMA--VQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDI-VHSH 391 (817)
Q Consensus 315 ~~~~~~~~~L~ylk~LGv~~I~LmP--i~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDv-V~NH 391 (817)
+...+. +.++.++.+|+|.++|== -++.+.+...++ ....=|.+|+++|++-|.++||.||--+ ++.|
T Consensus 15 ~~~~lk-~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~--------~~~~yT~~ei~ei~~yA~~~gI~vIPeid~pGH 85 (301)
T cd06565 15 KVSYLK-KLLRLLALLGANGLLLYYEDTFPYEGEPEVGR--------MRGAYTKEEIREIDDYAAELGIEVIPLIQTLGH 85 (301)
T ss_pred CHHHHH-HHHHHHHHcCCCEEEEEEecceecCCCccccc--------CCCCcCHHHHHHHHHHHHHcCCEEEecCCCHHH
Confidence 344555 689999999999998721 111111111111 1222389999999999999999999877 4777
Q ss_pred cCCCccccCcCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCcccccccCccc
Q 003474 392 ASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQV 471 (817)
Q Consensus 392 ~s~~~~~~l~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~ 471 (817)
+..- +. . +.|-....... ....+|-.+|++.+++.+.+.-.++-|.-.=| |-|-+.
T Consensus 86 ~~~~----l~-~----~~~~~l~~~~~----~~~~l~~~~~~t~~fi~~li~ev~~~f~s~~~-----------HIG~DE 141 (301)
T cd06565 86 LEFI----LK-H----PEFRHLREVDD----PPQTLCPGEPKTYDFIEEMIRQVLELHPSKYI-----------HIGMDE 141 (301)
T ss_pred HHHH----Hh-C----cccccccccCC----CCCccCCCChhHHHHHHHHHHHHHHhCCCCeE-----------EECCCc
Confidence 7431 11 0 01110000000 02468999999999999999999985441111 112222
Q ss_pred cccCC---cccccCcc-cChhHHHHHHHHHHHhhccCCCEEEEEecC
Q 003474 472 AFTGN---YSEYFGFA-TDVDAVVYLMLVNDMIHGLYPEAVSIGEDV 514 (817)
Q Consensus 472 ~f~~~---~~~~~g~~-~~~~a~~fl~~~~~~v~~~~P~~~~IgE~~ 514 (817)
.+.-. +....+.. ...--..|++.+.+.+++..+..++-+|..
T Consensus 142 ~~~~g~~~~~~~~~~~~~~~l~~~~~~~v~~~v~~~g~~~~~W~D~~ 188 (301)
T cd06565 142 AYDLGRGRSLRKHGNLGRGELYLEHLKKVLKIIKKRGPKPMMWDDML 188 (301)
T ss_pred ccccCCCHHHHHhcCCCHHHHHHHHHHHHHHHHHHcCCEEEEEhHHh
Confidence 22111 11111111 111224789999999999888766665543
No 110
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=89.56 E-value=1.8 Score=52.58 Aligned_cols=132 Identities=20% Similarity=0.302 Sum_probs=79.5
Q ss_pred CCHHhhHhhhhhHHHHcCCC--EEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeeccc
Q 003474 314 NTYANFRDDVLPRIKRLGYN--AVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 391 (817)
Q Consensus 314 G~~~~~~~~~L~ylk~LGv~--~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH 391 (817)
+++..+. +...+++++|+. ++|.-=-+. ..+ .||.-=...|++ |+.+|+.+|++|+++|+=+-++-
T Consensus 308 ~nls~~~-dvv~~~~~agiPld~~~~DiDyM-d~y-------kDFTvd~~~fp~---~~~fv~~Lh~~G~kyvliidP~i 375 (805)
T KOG1065|consen 308 KNLSVVR-DVVENYRAAGIPLDVIVIDIDYM-DGY-------KDFTVDKVWFPD---LKDFVDDLHARGFKYVLIIDPFI 375 (805)
T ss_pred ccHHHHH-HHHHHHHHcCCCcceeeeehhhh-hcc-------cceeeccccCcc---hHHHHHHHHhCCCeEEEEeCCcc
Confidence 5677777 689999999986 665322111 111 232222245555 99999999999999987655332
Q ss_pred cCCCccccCcCCC-CCCCCccccCCCCCc------ccCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCC
Q 003474 392 ASNNVLDGLNMFD-GTDGHYFHSGSRGYH------WMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 460 (817)
Q Consensus 392 ~s~~~~~~l~~fd-g~~~~yf~~~~~g~~------~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~ 460 (817)
..... ...|+ |.....+-....|.. |.-...-.|+.||.+.....+.++..=++.++|||-+|+-.
T Consensus 376 s~~~~---y~~y~~g~~~~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~~~~~~fh~~vp~dg~wiDmnE 448 (805)
T KOG1065|consen 376 STNSS---YGPYDRGVAKDVLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWLDELKRFHDEVPFDGFWIDMNE 448 (805)
T ss_pred ccCcc---chhhhhhhhhceeeecccCchhhhcccCCCcccccccCCchHHHHHHHHHHhhcccCCccceEEECCC
Confidence 21111 01111 111122221111222 22233568899999999888888888888999999999843
No 111
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=89.39 E-value=0.9 Score=45.35 Aligned_cols=65 Identities=15% Similarity=0.296 Sum_probs=45.0
Q ss_pred hhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeecc
Q 003474 322 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 390 (817)
Q Consensus 322 ~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~N 390 (817)
+.+..+|++|+++|-|.= ..+...-+.++.++...-..+..+-+..+.++|.+.||+|++-+-++
T Consensus 24 ~~~~~m~~~GidtlIlq~----~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~ 88 (166)
T PF14488_consen 24 EEFRAMKAIGIDTLILQW----TGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFD 88 (166)
T ss_pred HHHHHHHHcCCcEEEEEE----eecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCC
Confidence 689999999999997651 22222333344442222223567889999999999999999986654
No 112
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=89.22 E-value=0.8 Score=57.26 Aligned_cols=129 Identities=13% Similarity=0.222 Sum_probs=78.4
Q ss_pred CHHhhHhhhhhHHHHcCC--CEEEEcCcccCCCCCCCCCccccccCCCC-CCCCHHHHHHHHHHHHHcCcEEEEeeeccc
Q 003474 315 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDIVHSH 391 (817)
Q Consensus 315 ~~~~~~~~~L~ylk~LGv--~~I~LmPi~e~~~~~s~GY~v~dy~avd~-~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH 391 (817)
+-..+. +.+..+++.|| ++|||-- .+. .||.+ |..|+ +|-. .++||+.+|++|+++|.=+.+ +
T Consensus 199 sq~eV~-eva~~fre~~IP~DvIwlDi----dYm--~g~~~---FTwD~~rFPd---P~~mv~~Lh~~G~kvv~iidP-g 264 (978)
T PLN02763 199 SAKRVA-EIARTFREKKIPCDVVWMDI----DYM--DGFRC---FTFDKERFPD---PKGLADDLHSIGFKAIWMLDP-G 264 (978)
T ss_pred CHHHHH-HHHHHHHHcCCCceEEEEeh----hhh--cCCCc---eeECcccCCC---HHHHHHHHHHCCCEEEEEEcC-C
Confidence 334555 57888888887 6787642 111 13332 44443 6754 479999999999999875433 3
Q ss_pred cCCCccccCcCC-CCCCCCccccCCCCC---cccCC--CCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCC
Q 003474 392 ASNNVLDGLNMF-DGTDGHYFHSGSRGY---HWMWD--SRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 460 (817)
Q Consensus 392 ~s~~~~~~l~~f-dg~~~~yf~~~~~g~---~~~w~--~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~ 460 (817)
+..+. +...+ .|....+|-....|. ...|. ..-.||.||+++++..+.++.+++ .|||||-+|+-.
T Consensus 265 I~~d~--gY~~y~eg~~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~d-~GVDG~W~DmnE 336 (978)
T PLN02763 265 IKAEE--GYFVYDSGCENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANLVKDFVS-NGVDGIWNDMNE 336 (978)
T ss_pred CccCC--CCHHHHhHhhcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHHHHHHhc-CCCcEEEccCCC
Confidence 32211 11111 122223333222221 12232 234699999999999999998888 899999999854
No 113
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=88.63 E-value=3.2 Score=46.48 Aligned_cols=150 Identities=19% Similarity=0.091 Sum_probs=82.4
Q ss_pred hhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeeccccCCCccccC
Q 003474 321 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGL 400 (817)
Q Consensus 321 ~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~l 400 (817)
++-+.-+|++|...|-|+.-. |.+..-|-=..++|..++..+ .-+=+++|+++|+++||++.+ -+++. .-+
T Consensus 94 dqW~~~ak~aGakY~VlTakH-HDGF~LW~S~~t~~~v~~~~~-krDiv~El~~A~rk~Glk~G~--Y~S~~-dw~---- 164 (346)
T PF01120_consen 94 DQWAKLAKDAGAKYVVLTAKH-HDGFCLWPSKYTDYNVVNSGP-KRDIVGELADACRKYGLKFGL--YYSPW-DWH---- 164 (346)
T ss_dssp HHHHHHHHHTT-SEEEEEEE--TT--BSS--TT-SSBGGGGGG-TS-HHHHHHHHHHHTT-EEEE--EEESS-SCC----
T ss_pred HHHHHHHHHcCCCEEEeehhh-cCccccCCCCCCcccccCCCC-CCCHHHHHHHHHHHcCCeEEE--Eecch-Hhc----
Confidence 356778999999999887655 233334544555555555323 358899999999999999998 33322 111
Q ss_pred cCCCCCCCCccccCCCCCcccCCCCCCCCCCH-HHHHHHHHHHHHHHHhCCccEEEEecCCcccccccCccccccCCccc
Q 003474 401 NMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSW-EVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSE 479 (817)
Q Consensus 401 ~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~p-eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~ 479 (817)
. +.|.. ...+.. .......-... .+.+++..-++-.++.|.+|.+=||+...-
T Consensus 165 ~------~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~~~----------------- 218 (346)
T PF01120_consen 165 H------PDYPP-DEEGDE--NGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGWPD----------------- 218 (346)
T ss_dssp C------TTTTS-SCHCHH--CC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTTSC-----------------
T ss_pred C------cccCC-CccCCc--ccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCCCc-----------------
Confidence 0 00100 000000 00000000001 244578888999999999999999986321
Q ss_pred ccCcccChhHHHHHHHHHHHhhccCCCEEEEEe
Q 003474 480 YFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGE 512 (817)
Q Consensus 480 ~~g~~~~~~a~~fl~~~~~~v~~~~P~~~~IgE 512 (817)
..+.. ....+.+.+++..|++++..=
T Consensus 219 ------~~~~~-~~~~~~~~i~~~qp~~ii~~r 244 (346)
T PF01120_consen 219 ------PDEDW-DSAELYNWIRKLQPDVIINNR 244 (346)
T ss_dssp ------CCTHH-HHHHHHHHHHHHSTTSEEECC
T ss_pred ------ccccc-CHHHHHHHHHHhCCeEEEecc
Confidence 01111 236677888888998887653
No 114
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=88.52 E-value=8.4 Score=43.30 Aligned_cols=130 Identities=18% Similarity=0.214 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHHHHcCcEEEEee-eccccCCCccccCcCCC--CCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHH
Q 003474 365 TPDDLKSLIDKAHELGLLVLMDI-VHSHASNNVLDGLNMFD--GTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSN 441 (817)
Q Consensus 365 t~edlk~LV~~aH~~GI~VIlDv-V~NH~s~~~~~~l~~fd--g~~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~l~~~ 441 (817)
|.+|+|+||+-|.++||.||-.+ ++.|+..-- .....+. +....+... .......||-.+|++.+++.+.
T Consensus 84 T~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l-~~~pel~~~~~~~~~~~~------~~~~~~~L~~~~~~t~~f~~~l 156 (357)
T cd06563 84 TQEEIREIVAYAAERGITVIPEIDMPGHALAAL-AAYPELGCTGGPGSVVSV------QGVVSNVLCPGKPETYTFLEDV 156 (357)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCchhHHHHH-HhCccccCCCCCCccccc------cCcCCCccCCCChhHHHHHHHH
Confidence 79999999999999999999998 588885311 0000010 100011000 0112246899999999999999
Q ss_pred HHHHHHhCCccEEEEecCCcccccccCccccccCCccc---------ccCcccChhH--HHHHHHHHHHhhccCCCEEEE
Q 003474 442 ARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSE---------YFGFATDVDA--VVYLMLVNDMIHGLYPEAVSI 510 (817)
Q Consensus 442 l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~---------~~g~~~~~~a--~~fl~~~~~~v~~~~P~~~~I 510 (817)
+.-.++-|.-. +-|-|-+..+...|.. ..|. .+... ..|++.+.+.+++.....++-
T Consensus 157 l~E~~~lF~~~-----------~iHiGgDE~~~~~w~~~~~~~~~~~~~g~-~~~~~l~~~f~~~~~~~v~~~G~~~i~W 224 (357)
T cd06563 157 LDEVAELFPSP-----------YIHIGGDEVPKGQWEKSPACQARMKEEGL-KDEHELQSYFIKRVEKILASKGKKMIGW 224 (357)
T ss_pred HHHHHHhCCCC-----------eEEEeccccCCcccccCHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 99999854311 1122333222222211 0011 12112 258899999998876555555
Q ss_pred Eec
Q 003474 511 GED 513 (817)
Q Consensus 511 gE~ 513 (817)
.|.
T Consensus 225 ~d~ 227 (357)
T cd06563 225 DEI 227 (357)
T ss_pred ecc
Confidence 554
No 115
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=88.03 E-value=1.8 Score=46.49 Aligned_cols=94 Identities=17% Similarity=0.204 Sum_probs=62.4
Q ss_pred CCHHhhHhhhhhHHHHcCC--CEEEEcCcccCCCCCCCCCccccccCCC-CCCCCHHHHHHHHHHHHHcCcEEEEeeecc
Q 003474 314 NTYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHS 390 (817)
Q Consensus 314 G~~~~~~~~~L~ylk~LGv--~~I~LmPi~e~~~~~s~GY~v~dy~avd-~~~Gt~edlk~LV~~aH~~GI~VIlDvV~N 390 (817)
.+-.++. +.+..+++.|+ ++|+|-.=+... ++.++ +..+ .+|-+ .++||+.+|++|++|++-+.+.
T Consensus 21 ~~~~~v~-~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~------~~~d~~~Fpd---p~~~i~~l~~~g~~~~~~~~P~ 89 (265)
T cd06589 21 GDQDKVL-EVIDGMRENDIPLDGFVLDDDYTDG-YGDFT------FDWDAGKFPN---PKSMIDELHDNGVKLVLWIDPY 89 (265)
T ss_pred CCHHHHH-HHHHHHHHcCCCccEEEECcccccC-Cceee------eecChhhCCC---HHHHHHHHHHCCCEEEEEeChh
Confidence 3555666 57888888666 678875444322 12221 2333 36655 5789999999999999976432
Q ss_pred ccCCCccccCcCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCc
Q 003474 391 HASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTS 461 (817)
Q Consensus 391 H~s~~~~~~l~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~ 461 (817)
+ ++...+.++..+.+.|||||-+|...-
T Consensus 90 -v------------------------------------------~~w~~~~~~~~~~~~Gvdg~w~D~~E~ 117 (265)
T cd06589 90 -I------------------------------------------REWWAEVVKKLLVSLGVDGFWTDMGEP 117 (265)
T ss_pred -H------------------------------------------HHHHHHHHHHhhccCCCCEEeccCCCC
Confidence 1 566666666665669999999997643
No 116
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=87.48 E-value=8.5 Score=43.72 Aligned_cols=115 Identities=22% Similarity=0.178 Sum_probs=74.1
Q ss_pred hhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeeccccCCCccccCc
Q 003474 322 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLN 401 (817)
Q Consensus 322 ~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~l~ 401 (817)
+-+.-+|+.|...|-|+.-. |....-|-=.+++|..++..+ .-|=+++|+++|+++||++-+ - |... ++.
T Consensus 85 ~Wa~~~k~AGakY~vlTaKH-HDGF~lw~S~~t~~n~~~~~p-krDiv~el~~A~rk~Glk~G~--Y--~S~~---DW~- 154 (384)
T smart00812 85 EWADLFKKAGAKYVVLTAKH-HDGFCLWDSKYSNWNAVDTGP-KRDLVGELADAVRKRGLKFGL--Y--HSLF---DWF- 154 (384)
T ss_pred HHHHHHHHcCCCeEEeeeee-cCCccccCCCCCCCcccCCCC-CcchHHHHHHHHHHcCCeEEE--E--cCHH---HhC-
Confidence 56788999999999776654 233333544556777776655 458899999999999999998 2 2211 111
Q ss_pred CCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHH---HHHHHHHHHhCCccEEEEecC
Q 003474 402 MFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFL---LSNARWWLEEYKFDGFRFDGV 459 (817)
Q Consensus 402 ~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~l---~~~l~~Wl~e~gvDGfR~D~v 459 (817)
.+.|... ++........+...+|+ ..-++-.+..||-|.+=||+.
T Consensus 155 -----~p~y~~~--------~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~ 202 (384)
T smart00812 155 -----NPLYAGP--------TSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGG 202 (384)
T ss_pred -----CCccccc--------cccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCC
Confidence 1122110 00011122334566777 788888889999999999975
No 117
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=87.34 E-value=0.46 Score=56.55 Aligned_cols=45 Identities=22% Similarity=0.223 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhCCC-CCCcEEEeeec---CCCcEEEEEcC----cEEEEEEcC
Q 003474 693 FDRAMQHLEEKYGFM-TSEHQYVSRKD---EGDRVIVFERG----NLVFVFNFH 738 (817)
Q Consensus 693 f~r~Li~LR~~~~~l-~~g~~~i~~~~---~~~~Vlaf~R~----~llvV~Nf~ 738 (817)
...+++++|++++.+ ..| .+..+.- ..+.|+||.|+ .+|+|.+.-
T Consensus 775 v~~~aL~lR~~~~elF~~G-dY~Pl~~~G~~a~hviAFaR~~~~~~~i~v~Prl 827 (889)
T COG3280 775 VTAAALRLRREHPELFAGG-DYLPLFAAGPAADHVIAFARGKDDQFAITVAPRL 827 (889)
T ss_pred HHHHHHHHHHhchHhhcCC-CeeeecccCchhHHHHHHhhccCCceeEEeehHH
Confidence 567889999999864 444 3333332 34779999993 356665543
No 118
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=87.26 E-value=16 Score=39.46 Aligned_cols=167 Identities=15% Similarity=0.094 Sum_probs=93.2
Q ss_pred hhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHH-HH-HHHHHcCcEEEEeeeccccCCCccc
Q 003474 321 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKS-LI-DKAHELGLLVLMDIVHSHASNNVLD 398 (817)
Q Consensus 321 ~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~-LV-~~aH~~GI~VIlDvV~NH~s~~~~~ 398 (817)
+..+++|+++|+|+|+|-++.+..+.+. +..-|=++.+.--.+||-. .+ +...+.|++|..-+..=-
T Consensus 20 ~~l~~ri~~~~~~tV~Lqaf~d~~gdg~----~~~~YFpnr~lpvraDlf~rvawql~tr~~v~VyAWMPvla------- 88 (294)
T PF14883_consen 20 DKLIQRIKDMGINTVYLQAFADPDGDGN----ADAVYFPNRHLPVRADLFNRVAWQLRTRAGVKVYAWMPVLA------- 88 (294)
T ss_pred HHHHHHHHHcCCCEEEEEeeeCCCCCCc----eeeEEcCCCCCchHHHHHHHHHHHHhhhhCCEEEEeeehhh-------
Confidence 3688999999999999999887654332 2223445555555555544 44 344489999987765311
Q ss_pred cCcCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEE-ecCCcccccccCccccccCCc
Q 003474 399 GLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRF-DGVTSMMYTHHGLQVAFTGNY 477 (817)
Q Consensus 399 ~l~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~-D~v~~m~~~~~g~~~~f~~~~ 477 (817)
|+-....+...........-...-|.--+|++|+.|.++..-....-.|||+=| |-+- + . |+.++. ..
T Consensus 89 ----f~lp~~~~~~~~~~~~~~~~~y~RLSPf~p~~r~~I~~IYeDLA~y~~fdGILFhDDa~-L-~-D~E~~~----~~ 157 (294)
T PF14883_consen 89 ----FDLPKVKRADEVRTDRPDPDGYRRLSPFDPEARQIIKEIYEDLARYSKFDGILFHDDAV-L-S-DFEIAA----IR 157 (294)
T ss_pred ----ccCCCcchhhhccccCCCCCCceecCCCCHHHHHHHHHHHHHHHhhCCCCeEEEcCCcc-c-c-chhhhh----hc
Confidence 111111111000000000011235666789999999999999998459999988 3321 1 1 111000 00
Q ss_pred ccccCcccChhHHHHHHHHHHHhhccCCCEEE
Q 003474 478 SEYFGFATDVDAVVYLMLVNDMIHGLYPEAVS 509 (817)
Q Consensus 478 ~~~~g~~~~~~a~~fl~~~~~~v~~~~P~~~~ 509 (817)
.+-........-+.|..++.+.++...|++.+
T Consensus 158 ~~~~~~~Kt~~Li~ft~eL~~~v~~~rp~lkT 189 (294)
T PF14883_consen 158 QNPADRQKTRALIDFTMELAAAVRRYRPDLKT 189 (294)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHhCccchh
Confidence 00000000112258999999999998887654
No 119
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=87.07 E-value=3.9 Score=45.11 Aligned_cols=120 Identities=18% Similarity=0.167 Sum_probs=73.3
Q ss_pred HhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCC-----CCCCCHHHHHHHHHHHHHcCcEEEEee-ecc
Q 003474 317 ANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPS-----SRCGTPDDLKSLIDKAHELGLLVLMDI-VHS 390 (817)
Q Consensus 317 ~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd-----~~~Gt~edlk~LV~~aH~~GI~VIlDv-V~N 390 (817)
..|. +.|+.+..+++|.++|==. ...+|.+....|=.+. ..|=|.+|+++||+-|.++||.||-.+ ++.
T Consensus 18 ~~ik-~~Id~ma~~KlN~lh~Hlt----Dd~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEId~PG 92 (311)
T cd06570 18 AVIK-RQLDAMASVKLNVFHWHLT----DDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEIDVPG 92 (311)
T ss_pred HHHH-HHHHHHHHhCCeEEEEEEe----cCCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEeecCcc
Confidence 4444 6889999999998775210 0112333322222211 123389999999999999999999998 588
Q ss_pred ccCCCccccCcCCCC---CCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhC
Q 003474 391 HASNNVLDGLNMFDG---TDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEY 449 (817)
Q Consensus 391 H~s~~~~~~l~~fdg---~~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~ 449 (817)
|+..- +..+.. ....+.. . ..+......||..+|++.+++.+.+.-+++-|
T Consensus 93 H~~a~----~~~ypel~~~~~~~~~--~--~~~~~~~~~l~~~~p~t~~f~~~l~~E~~~lF 146 (311)
T cd06570 93 HASAI----AVAYPELASGPGPYVI--E--RGWGVFEPLLDPTNEETYTFLDNLFGEMAELF 146 (311)
T ss_pred chHHH----HHhCHHhccCCCcccc--c--cccccCCCccCCCChhHHHHHHHHHHHHHHhC
Confidence 88531 111110 0000000 0 01111224699999999999999999998744
No 120
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=86.60 E-value=3.3 Score=47.93 Aligned_cols=83 Identities=16% Similarity=0.161 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHHcCcEEEEee-eccccCCCcc---ccCcCC--CCCC---CCccccCCC---CC--cccCCCCCCCCC
Q 003474 365 TPDDLKSLIDKAHELGLLVLMDI-VHSHASNNVL---DGLNMF--DGTD---GHYFHSGSR---GY--HWMWDSRLFNYG 430 (817)
Q Consensus 365 t~edlk~LV~~aH~~GI~VIlDv-V~NH~s~~~~---~~l~~f--dg~~---~~yf~~~~~---g~--~~~w~~~~ln~~ 430 (817)
|.+|+|+||+-|+++||.||-.| ++.|+..--. .....+ .|.. ..|...+.. .+ ...|....||-.
T Consensus 95 T~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~a~~~~yp~l~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~~L~p~ 174 (445)
T cd06569 95 SRADYIEILKYAKARHIEVIPEIDMPGHARAAIKAMEARYRKLMAAGKPAEAEEYRLSDPADTSQYLSVQFYTDNVINPC 174 (445)
T ss_pred CHHHHHHHHHHHHHcCCEEEEccCCchhHHHHHHhhhccchhhhccCCccccccccccCcccccccccccccccccccCC
Confidence 79999999999999999999998 5888753100 000000 0110 011111110 00 112334579999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 003474 431 SWEVLRFLLSNARWWLE 447 (817)
Q Consensus 431 ~peV~~~l~~~l~~Wl~ 447 (817)
+|++.+|+.+.+.-.++
T Consensus 175 ~~~ty~fl~~vl~Ev~~ 191 (445)
T cd06569 175 MPSTYRFVDKVIDEIAR 191 (445)
T ss_pred chhHHHHHHHHHHHHHH
Confidence 99999999999998887
No 121
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=86.52 E-value=1.9 Score=48.81 Aligned_cols=116 Identities=19% Similarity=0.170 Sum_probs=63.7
Q ss_pred hhhhhHHHHcCCCEEEEcCcccC---CCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeeccccCCCcc
Q 003474 321 DDVLPRIKRLGYNAVQIMAVQEH---SYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVL 397 (817)
Q Consensus 321 ~~~L~ylk~LGv~~I~LmPi~e~---~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~s~~~~ 397 (817)
++.|..+|++|+|+|.|-.+.-. |..+. | .-+.|.++|+.|+++||+|||-+. .+.. +
T Consensus 13 ~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~--y-------------dF~~lD~~l~~a~~~Gi~viL~~~-~~~~---P 73 (374)
T PF02449_consen 13 EEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQ--Y-------------DFSWLDRVLDLAAKHGIKVILGTP-TAAP---P 73 (374)
T ss_dssp HHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB------------------HHHHHHHHHHHCTT-EEEEEEC-TTTS----
T ss_pred HHHHHHHHHcCCCEEEEEEechhhccCCCCe--e-------------ecHHHHHHHHHHHhccCeEEEEec-cccc---c
Confidence 47899999999999998765321 21111 1 224588999999999999999775 2222 2
Q ss_pred ccCcCCCCCCCCccccCCCCCcccCCC-CCCCCCCHHHHHHHHHHHHHHHHhCC----ccEEEEec
Q 003474 398 DGLNMFDGTDGHYFHSGSRGYHWMWDS-RLFNYGSWEVLRFLLSNARWWLEEYK----FDGFRFDG 458 (817)
Q Consensus 398 ~~l~~fdg~~~~yf~~~~~g~~~~w~~-~~ln~~~peV~~~l~~~l~~Wl~e~g----vDGfR~D~ 458 (817)
.++..- .+.-...+..|....++. ..+++.+|.+|+++...++..++.|+ |-|+-+|.
T Consensus 74 ~Wl~~~---~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~N 136 (374)
T PF02449_consen 74 AWLYDK---YPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDN 136 (374)
T ss_dssp HHHHCC---SGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECC
T ss_pred cchhhh---cccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEecc
Confidence 222110 001111112222222222 34677899999887777666665443 66776654
No 122
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=86.35 E-value=0.81 Score=41.06 Aligned_cols=60 Identities=23% Similarity=0.452 Sum_probs=41.7
Q ss_pred EEEEEecC--CcCEEEEEeecC---CCCC-cccccccC----CCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCC
Q 003474 185 ITYREWAP--GAKSASLIGDFN---NWNP-NADIMTQN----EFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 250 (817)
Q Consensus 185 v~fr~WAP--~A~~V~LvgdFN---~W~~-~~~pm~r~----~~GvWei~lp~~~~g~~~~~~g~~yk~~~~~~~g 250 (817)
|+|++-+. -.++|.|+|+.. +|+. .+.+|... ...+|++.|.-.. +. -..|||.+...+|
T Consensus 4 V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~-~~-----~~eYKy~i~~~~g 73 (96)
T PF00686_consen 4 VTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPA-GT-----PFEYKYVIKDADG 73 (96)
T ss_dssp EEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEET-TS-----EEEEEEEEEETTS
T ss_pred EEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcC-CC-----EEEEEEEEEeCCC
Confidence 67887433 347899999876 6997 56789875 4589999985322 21 2479998866554
No 123
>PRK12568 glycogen branching enzyme; Provisional
Probab=85.09 E-value=2 Score=52.39 Aligned_cols=79 Identities=20% Similarity=0.268 Sum_probs=55.2
Q ss_pred hhhcccccCCcEEeCCc-EEEEEecCCcCEEEEEeecCCCCCccccccc-CCCceEEEEeCCCCCCCCCCCCCCEEEEEE
Q 003474 168 AFSRGYEKFGFIRSDTG-ITYREWAPGAKSASLIGDFNNWNPNADIMTQ-NEFGVWEIFLPNNADGSPPIPHGSRVKIHM 245 (817)
Q Consensus 168 ~f~~~y~~lG~~~~~~g-v~fr~WAP~A~~V~LvgdFN~W~~~~~pm~r-~~~GvWei~lp~~~~g~~~~~~g~~yk~~~ 245 (817)
.+..-+.-||.|...+| +++|+|.|.|.+|.|+.. . .....+|++ .+.|.|+..||.. ..|++++
T Consensus 22 ~~~~p~~~lg~h~~~~~~~~~r~~~p~a~~v~~~~~-~--~~~~~~~~~~~~~g~f~~~~~~~----------~~y~~~~ 88 (730)
T PRK12568 22 LPADAFAVLGPHPQADGRRQVRVLAPGAEAMGLIDG-R--GKLLARMQASPIDGVFEGILPAD----------GPYRLRI 88 (730)
T ss_pred CcCCchHhcCCcCCCCCcEEEEEECCCCcEEEEEec-C--CccccccEecCCCCeEEEecCCC----------CCEEEEE
Confidence 34556778999988888 799999999999999831 1 122237887 4679999999832 1378887
Q ss_pred eCCCCccccCCccc
Q 003474 246 DTPSGIKDSIPAWI 259 (817)
Q Consensus 246 ~~~~g~~~~~~~~~ 259 (817)
...++.....+||.
T Consensus 89 ~~~~~~~~~~dpy~ 102 (730)
T PRK12568 89 VWPDVVQEIEDPYA 102 (730)
T ss_pred EeCCceEEeecccc
Confidence 76444434445554
No 124
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=84.52 E-value=2 Score=47.92 Aligned_cols=95 Identities=19% Similarity=0.242 Sum_probs=58.3
Q ss_pred HHHHHHHHcCcEEEEeeeccccCCCccccCcCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 003474 371 SLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYK 450 (817)
Q Consensus 371 ~LV~~aH~~GI~VIlDvV~NH~s~~~~~~l~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~g 450 (817)
..|++||++|++|+-=+........ ..+. ..|- .+++.+..+++.|.-.++.||
T Consensus 50 ~~idaAHknGV~Vlgti~~e~~~~~--~~~~-----------------------~lL~-~~~~~~~~~a~kLv~lak~yG 103 (339)
T cd06547 50 DWINAAHRNGVPVLGTFIFEWTGQV--EWLE-----------------------DFLK-KDEDGSFPVADKLVEVAKYYG 103 (339)
T ss_pred HHHHHHHhcCCeEEEEEEecCCCch--HHHH-----------------------HHhc-cCcccchHHHHHHHHHHHHhC
Confidence 6789999999999985543321000 0000 0010 113444566677777777899
Q ss_pred ccEEEEecCCcccccccCccccccCCcccccCcccChhH-HHHHHHHHHHhhccCCCEEEE
Q 003474 451 FDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDA-VVYLMLVNDMIHGLYPEAVSI 510 (817)
Q Consensus 451 vDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a-~~fl~~~~~~v~~~~P~~~~I 510 (817)
+||+=+|.=... +...+.+. ..|++++++.+++..|+..+|
T Consensus 104 fDGw~iN~E~~~-------------------~~~~~~~~l~~F~~~L~~~~~~~~~~~~v~ 145 (339)
T cd06547 104 FDGWLINIETEL-------------------GDAEKAKRLIAFLRYLKAKLHENVPGSLVI 145 (339)
T ss_pred CCceEeeeeccC-------------------CcHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Confidence 999999853221 01123333 479999999999988876655
No 125
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=84.13 E-value=2 Score=37.33 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=16.4
Q ss_pred CCCcEEEEEc----CcEEEEEEcCC
Q 003474 719 EGDRVIVFER----GNLVFVFNFHW 739 (817)
Q Consensus 719 ~~~~Vlaf~R----~~llvV~Nf~~ 739 (817)
..++|++|.| +.++||+|.+.
T Consensus 7 P~~gvYvYfR~~~~~tVmVilN~n~ 31 (78)
T PF10438_consen 7 PQDGVYVYFRYYDGKTVMVILNKND 31 (78)
T ss_dssp -BTTEEEEEEEESSEEEEEEEE-SS
T ss_pred ccCCEEEEEEEcCCCEEEEEEcCCC
Confidence 4578999999 57999999984
No 126
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=83.81 E-value=2.2 Score=40.07 Aligned_cols=57 Identities=18% Similarity=0.492 Sum_probs=40.8
Q ss_pred EEEEEecC---CcCEEEEEee---cCCCCCc-ccccccC--CCceEEEEeCCCCCCCCCCCCCCEEEEEEeC
Q 003474 185 ITYREWAP---GAKSASLIGD---FNNWNPN-ADIMTQN--EFGVWEIFLPNNADGSPPIPHGSRVKIHMDT 247 (817)
Q Consensus 185 v~fr~WAP---~A~~V~Lvgd---FN~W~~~-~~pm~r~--~~GvWei~lp~~~~g~~~~~~g~~yk~~~~~ 247 (817)
++|++-+| ..+.|.|+|+ +.+|+.. +.+|++. ....|++.+.-.. +. -..|||.+..
T Consensus 3 v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~-~~-----~veYkY~~~~ 68 (120)
T cd05814 3 VTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPR-GV-----DFQYRYFVAV 68 (120)
T ss_pred EEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECC-CC-----eEEEEEEEEE
Confidence 78998886 3468999998 8899854 5789876 6789988775321 11 2478887743
No 127
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=83.67 E-value=9.2 Score=41.19 Aligned_cols=153 Identities=21% Similarity=0.192 Sum_probs=80.6
Q ss_pred hhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHH---HHHHHHHHcCcEEEEeeeccccCC
Q 003474 318 NFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLK---SLIDKAHELGLLVLMDIVHSHASN 394 (817)
Q Consensus 318 ~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk---~LV~~aH~~GI~VIlDvV~NH~s~ 394 (817)
+...+.|.-||+.|||.|-|- |+-.|++.+ | ++--|+..|++ ++.+.|...||+|++|+-++-.-.
T Consensus 63 g~~qD~~~iLK~~GvNyvRlR-vwndP~dsn-g---------n~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwa 131 (403)
T COG3867 63 GVRQDALQILKNHGVNYVRLR-VWNDPYDSN-G---------NGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWA 131 (403)
T ss_pred ChHHHHHHHHHHcCcCeEEEE-EecCCccCC-C---------CccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhcc
Confidence 444468899999999998763 444454321 1 12223344454 556778889999999985542211
Q ss_pred CccccCcCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCcccccccCcccccc
Q 003474 395 NVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFT 474 (817)
Q Consensus 395 ~~~~~l~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~ 474 (817)
+ +. .......|....|+--...|.+|-..++....+| || -.|+|.- ..+ ...+|-
T Consensus 132 D------------Pa-----kQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~e-Gi---~pdmVQV-GNE---tn~gfl 186 (403)
T COG3867 132 D------------PA-----KQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKE-GI---LPDMVQV-GNE---TNGGFL 186 (403)
T ss_pred C------------hh-----hcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHc-CC---CccceEe-ccc---cCCcee
Confidence 1 00 0011123443334434556667777777777775 54 4565532 111 011233
Q ss_pred CCcccccCcccChhHH-HHHHHHHHHhhccCCCEEEE
Q 003474 475 GNYSEYFGFATDVDAV-VYLMLVNDMIHGLYPEAVSI 510 (817)
Q Consensus 475 ~~~~~~~g~~~~~~a~-~fl~~~~~~v~~~~P~~~~I 510 (817)
..++|. .+-+.+ ..+.+...+|++..|++.++
T Consensus 187 wp~Ge~----~~f~k~a~L~n~g~~avrev~p~ikv~ 219 (403)
T COG3867 187 WPDGEG----RNFDKMAALLNAGIRAVREVSPTIKVA 219 (403)
T ss_pred ccCCCC----cChHHHHHHHHHHhhhhhhcCCCceEE
Confidence 222222 122222 45566666777788875543
No 128
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=83.50 E-value=4.6 Score=36.49 Aligned_cols=60 Identities=20% Similarity=0.419 Sum_probs=43.2
Q ss_pred EEEEEecCC---cCEEEEEee---cCCCCCc-ccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCC
Q 003474 185 ITYREWAPG---AKSASLIGD---FNNWNPN-ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPS 249 (817)
Q Consensus 185 v~fr~WAP~---A~~V~Lvgd---FN~W~~~-~~pm~r~~~GvWei~lp~~~~g~~~~~~g~~yk~~~~~~~ 249 (817)
|+|++-.|. -+.|+|+|+ +.+|+.. +.+|...+...|++.++-.... ....|||.+...+
T Consensus 2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~~p~~~-----~~ieYKyvi~~~~ 68 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDVGFPIWEADIDISKDS-----FPFEYKYIIANKD 68 (99)
T ss_pred EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCCCCCcEEEEEEeCCCC-----ccEEEEEEEEeCC
Confidence 689998875 368999997 4579864 5789888889998888643211 1247999886543
No 129
>PF08533 Glyco_hydro_42C: Beta-galactosidase C-terminal domain; InterPro: IPR013739 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found at the C terminus of beta-galactosidase enzymes that belong to the glycosyl hydrolase 42 family []. ; GO: 0004565 beta-galactosidase activity; PDB: 1KWK_A 1KWG_A.
Probab=82.75 E-value=3.8 Score=33.22 Aligned_cols=46 Identities=24% Similarity=0.291 Sum_probs=25.0
Q ss_pred CcEEEEEEcCCCCcccceEEcccCCCceEEEEcCCCCCcCCccccCCCcceeccccccCCCCeEEEEEEcCceEEEEE
Q 003474 729 GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYA 806 (817)
Q Consensus 729 ~~llvV~Nf~~~~~~~~~~i~v~~~g~~~~vl~sd~~~~gG~~~~~~~~~~~~~~~~~~~~~~~i~l~lpp~s~~Vl~ 806 (817)
+.++|++||+. .+ ..+.+ +..++++|+.... +-.++|+|+++.||+
T Consensus 12 ~~y~F~~N~s~-~~---~~v~l--~~~~~dll~g~~~--------------------------~~~~~L~p~~v~Vl~ 57 (58)
T PF08533_consen 12 GRYLFLLNFSD-EP---QTVTL--PESYTDLLTGETV--------------------------SGGLTLPPYGVRVLK 57 (58)
T ss_dssp TTEEEEEE-SS-S----EE------TT-EEEES---------------------------------SEE-TTEEEEEE
T ss_pred CEEEEEEECCC-CC---EEEEc--CCCceecccCcce--------------------------eeEEEECCCEEEEEE
Confidence 57999999994 22 23433 5667888863210 112899999999987
No 130
>PLN02316 synthase/transferase
Probab=82.23 E-value=14 Score=47.01 Aligned_cols=47 Identities=11% Similarity=0.189 Sum_probs=30.8
Q ss_pred CCceEEEeecCC-CCCCCCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccC
Q 003474 295 KSLRIYEAHVGM-SSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEH 343 (817)
Q Consensus 295 ~~~~IYE~hv~~-~~~~~~~G~~~~~~~~~L~ylk~LGv~~I~LmPi~e~ 343 (817)
.++.| +||.+ ..+-.+.|.+..+..+.-..|+++|.+.--+||-+..
T Consensus 586 ~pM~I--l~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~ 633 (1036)
T PLN02316 586 PPMHI--VHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDC 633 (1036)
T ss_pred CCcEE--EEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcc
Confidence 34666 34433 2233456777777655566789999999999997753
No 131
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=81.85 E-value=5.3 Score=43.99 Aligned_cols=61 Identities=25% Similarity=0.383 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHcCcEEEEeeeccccCCCccccCcCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 003474 365 TPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARW 444 (817)
Q Consensus 365 t~edlk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~l~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~l~~~l~~ 444 (817)
+.+++++-|+.||++|++|||=+ +. ..+ . ....+++-++.+++++.-
T Consensus 58 ~~~~~~~~i~~~q~~G~KVllSi-----GG--------~~~---~-----------------~~~~~~~~~~~fa~sl~~ 104 (312)
T cd02871 58 SPAEFKADIKALQAKGKKVLISI-----GG--------ANG---H-----------------VDLNHTAQEDNFVDSIVA 104 (312)
T ss_pred ChHHHHHHHHHHHHCCCEEEEEE-----eC--------CCC---c-----------------cccCCHHHHHHHHHHHHH
Confidence 56889999999999999999864 10 000 0 013456778889999999
Q ss_pred HHHhCCccEEEEec
Q 003474 445 WLEEYKFDGFRFDG 458 (817)
Q Consensus 445 Wl~e~gvDGfR~D~ 458 (817)
+++++|+||+=||-
T Consensus 105 ~~~~~g~DGiDiD~ 118 (312)
T cd02871 105 IIKEYGFDGLDIDL 118 (312)
T ss_pred HHHHhCCCeEEEec
Confidence 99999999999995
No 132
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=80.22 E-value=2 Score=46.97 Aligned_cols=53 Identities=23% Similarity=0.296 Sum_probs=36.6
Q ss_pred hhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeecc
Q 003474 322 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 390 (817)
Q Consensus 322 ~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~N 390 (817)
.-|+...+.|++-|... +..-.... . +-..-|++|++.||+.|++||+|+-+.
T Consensus 20 ~Yi~~~~~~Gf~~IFts-l~~~~~~~-~--------------~~~~~~~ell~~Anklg~~vivDvnPs 72 (360)
T COG3589 20 AYIDRMHKYGFKRIFTS-LLIPEEDA-E--------------LYFHRFKELLKEANKLGLRVIVDVNPS 72 (360)
T ss_pred HHHHHHHHcCccceeee-cccCCchH-H--------------HHHHHHHHHHHHHHhcCcEEEEEcCHH
Confidence 46777788999998632 22111100 0 223569999999999999999998764
No 133
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=79.50 E-value=12 Score=41.03 Aligned_cols=89 Identities=22% Similarity=0.269 Sum_probs=58.1
Q ss_pred HHHHHHHHHHcCcEEEEeeeccccCCCccccCcCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 003474 369 LKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEE 448 (817)
Q Consensus 369 lk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~l~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e 448 (817)
..++++.||++|++|++=|- +... . .|+. ..|+ --..+++.|+.+++++..++++
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~-~~~~-~------~~~~---~~~~--------------~~l~~~~~r~~fi~~iv~~l~~ 101 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVIT-NLTN-G------NFDS---ELAH--------------AVLSNPEARQRLINNILALAKK 101 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEe-cCCC-C------CCCH---HHHH--------------HHhcCHHHHHHHHHHHHHHHHH
Confidence 36899999999999997543 1111 0 0100 0010 1134688899999999999999
Q ss_pred CCccEEEEecCCcccccccCccccccCCcccccCcccChh-HHHHHHHHHHHhhcc
Q 003474 449 YKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVD-AVVYLMLVNDMIHGL 503 (817)
Q Consensus 449 ~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~-a~~fl~~~~~~v~~~ 503 (817)
+|+||+-+|--. + ...+.+ -..|+++++..+++.
T Consensus 102 ~~~DGidiDwE~-~--------------------~~~d~~~~~~fl~~lr~~l~~~ 136 (313)
T cd02874 102 YGYDGVNIDFEN-V--------------------PPEDREAYTQFLRELSDRLHPA 136 (313)
T ss_pred hCCCcEEEeccc-C--------------------CHHHHHHHHHHHHHHHHHhhhc
Confidence 999999998521 1 011222 357899999999754
No 134
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=78.53 E-value=4.5 Score=49.45 Aligned_cols=90 Identities=14% Similarity=0.254 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHcCcEEEEeeecc--ccCCCcccc-----CcCCCCCCCCccccCCCCCcccCCCCCCCCCCHHH--HHH
Q 003474 367 DDLKSLIDKAHELGLLVLMDIVHS--HASNNVLDG-----LNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEV--LRF 437 (817)
Q Consensus 367 edlk~LV~~aH~~GI~VIlDvV~N--H~s~~~~~~-----l~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~peV--~~~ 437 (817)
.+++++-+.|+++||.+|-|+-+. +-|.+.+.. +..--|.++.+|... |+ .||.|.+|+..-+- -+.
T Consensus 274 ~Q~~~~~~yA~~~GI~L~GDLPIgVa~dSaDvWa~p~lF~ld~~aGAPPD~FS~~--GQ--nWG~P~YnW~~l~~dgY~W 349 (745)
T PLN03236 274 RQLRRAAAHAAAKGVILKGDLPIGVDKASVDTWMHPKLFRMDTSTGAPPDAFDAN--GQ--NWGFPTYDWEEMAEDDYAW 349 (745)
T ss_pred HHHHHHHHHHHHCCCEEEEEeeceeCCCcHHHhcCHHHhcCCCCcCCCCCCCCcc--cC--cCCCCCcCHHHHHhcCcHH
Confidence 678888999999999999999854 333332111 112246677777543 33 48888887753111 122
Q ss_pred HHHHHHHHHHhCCccEEEEecCCcc
Q 003474 438 LLSNARWWLEEYKFDGFRFDGVTSM 462 (817)
Q Consensus 438 l~~~l~~Wl~e~gvDGfR~D~v~~m 462 (817)
..+.+++-++ .+|++|+|.+-.+
T Consensus 350 Wr~Rlr~~~~--~~dalRIDH~~Gf 372 (745)
T PLN03236 350 WRARMQHLEQ--FFSAIRIDHILGF 372 (745)
T ss_pred HHHHHHHHHH--hCCeEEeechhhh
Confidence 4455555554 6899999987553
No 135
>PRK14705 glycogen branching enzyme; Provisional
Probab=77.65 E-value=4.5 Score=52.18 Aligned_cols=81 Identities=19% Similarity=0.190 Sum_probs=54.9
Q ss_pred hhcccccCCcEEeCCcE-EEEEecCCcCEEEEEeecCCCCCcccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeC
Q 003474 169 FSRGYEKFGFIRSDTGI-TYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDT 247 (817)
Q Consensus 169 f~~~y~~lG~~~~~~gv-~fr~WAP~A~~V~LvgdFN~W~~~~~pm~r~~~GvWei~lp~~~~g~~~~~~g~~yk~~~~~ 247 (817)
+..-+.-||.|...+|+ ++|+|-|.|++|.|+.. ....+|++.+.|+|+..+|....+. ...|++++..
T Consensus 516 ~~~p~~~lg~h~~~~~~~~~r~~~p~a~~v~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~y~~~~~~ 585 (1224)
T PRK14705 516 YHAPHSVLGAHLDDHGHVTVRTVKHLAKAVSVVTA-----AGRVPMTHEAHGVWAAVLEPLQAGH-----VPDYRLEVTY 585 (1224)
T ss_pred cCCChHhcCCcCCCCceEEEEEECCCCeEEEEEeC-----CCceeeeeCCCCEEEEeccccccCC-----CCCeEEEEEe
Confidence 45566789999877884 79999999999999842 2334788888899999998421111 1138888775
Q ss_pred CCCc-cccCCccc
Q 003474 248 PSGI-KDSIPAWI 259 (817)
Q Consensus 248 ~~g~-~~~~~~~~ 259 (817)
.++. ....+||.
T Consensus 586 ~~~~~~~~~d~y~ 598 (1224)
T PRK14705 586 DGAEPVTIDDPYH 598 (1224)
T ss_pred CCccceEeccccc
Confidence 4433 23345554
No 136
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=76.56 E-value=2.7 Score=46.77 Aligned_cols=125 Identities=14% Similarity=0.180 Sum_probs=71.3
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccC------CCC----CCCCHHHHHHHHHHHHHcCcEEE
Q 003474 315 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFA------PSS----RCGTPDDLKSLIDKAHELGLLVL 384 (817)
Q Consensus 315 ~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~a------vd~----~~Gt~edlk~LV~~aH~~GI~VI 384 (817)
+...|. +.|+.+..+++|.++|=-- + ..+|.+....|=. ..+ .+=|.+|+++||+.|+++||.||
T Consensus 16 ~~~~ik-~~id~ma~~k~N~lhlhl~-D---~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VI 90 (351)
T PF00728_consen 16 SVDTIK-RLIDQMAYYKLNVLHLHLS-D---DQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVI 90 (351)
T ss_dssp -HHHHH-HHHHHHHHTT-SEEEEEEE-S---STCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEE
T ss_pred CHHHHH-HHHHHHHHcCCcEEEEEEe-c---CCCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCcee
Confidence 445565 6899999999999986221 1 1122222222111 111 14478999999999999999999
Q ss_pred Eee-eccccCCCcc--ccCcCC-CCCCCCccccCCCCCcccCCC--CCCCCCCHHHHHHHHHHHHHHHHhCC
Q 003474 385 MDI-VHSHASNNVL--DGLNMF-DGTDGHYFHSGSRGYHWMWDS--RLFNYGSWEVLRFLLSNARWWLEEYK 450 (817)
Q Consensus 385 lDv-V~NH~s~~~~--~~l~~f-dg~~~~yf~~~~~g~~~~w~~--~~ln~~~peV~~~l~~~l~~Wl~e~g 450 (817)
-.| ++.|+..--. ..+... ...+..+.. ...+.. ..||..+|++.+++.+.+.-.++-|.
T Consensus 91 Peid~PGH~~~~l~~~p~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~ 156 (351)
T PF00728_consen 91 PEIDTPGHAEAWLKAYPELGCSAWPEDKSWPN------STCWYPDNGVLDPSNPETYEFLKDLLDEVADLFP 156 (351)
T ss_dssp EEEEESSS-HHHHHHHHHHCCCHTTCSSSCEE------EETTSEEEEEE-TTSHHHHHHHHHHHHHHHHHHT
T ss_pred eeccCchHHHHHHHhCchhhcccccccccccc------ccccCCCcccCCCCcHHHHHHHHHHHHHHHhhCC
Confidence 999 5888864210 000000 000000100 111111 36899999999999999999998665
No 137
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=76.21 E-value=2.7 Score=46.48 Aligned_cols=56 Identities=27% Similarity=0.306 Sum_probs=35.2
Q ss_pred hhhhhHHHHcCCCEEEEcCcccC--CCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeee
Q 003474 321 DDVLPRIKRLGYNAVQIMAVQEH--SYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIV 388 (817)
Q Consensus 321 ~~~L~ylk~LGv~~I~LmPi~e~--~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV 388 (817)
.++|..+|++|+|+|..-=.+.. +.. | +-| |-...||..|++.|+++||.|||-.=
T Consensus 27 ~~~l~k~ka~G~n~v~~yv~W~~he~~~---g--~~d-------f~g~~dl~~f~~~a~~~gl~vilrpG 84 (319)
T PF01301_consen 27 RDRLQKMKAAGLNTVSTYVPWNLHEPEE---G--QFD-------FTGNRDLDRFLDLAQENGLYVILRPG 84 (319)
T ss_dssp HHHHHHHHHTT-SEEEEE--HHHHSSBT---T--B----------SGGG-HHHHHHHHHHTT-EEEEEEE
T ss_pred HHHHHHHHhCCcceEEEeccccccCCCC---C--ccc-------ccchhhHHHHHHHHHHcCcEEEeccc
Confidence 36899999999999975432221 110 1 112 22347999999999999999999853
No 138
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=75.89 E-value=8.3 Score=34.83 Aligned_cols=61 Identities=13% Similarity=0.209 Sum_probs=39.7
Q ss_pred cEEEEEecCC---cCEEEEEe---ecCCCCCccccccc---CCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCC
Q 003474 184 GITYREWAPG---AKSASLIG---DFNNWNPNADIMTQ---NEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 250 (817)
Q Consensus 184 gv~fr~WAP~---A~~V~Lvg---dFN~W~~~~~pm~r---~~~GvWei~lp~~~~g~~~~~~g~~yk~~~~~~~g 250 (817)
.|+|++-.|. .+.|+|+| ++.+|+....+|.. ..++.|++.|... .|. -..|||.+...++
T Consensus 4 ~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp-~~~-----~veyKyv~~~~~~ 73 (99)
T cd05809 4 PQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLP-AGR-----NIEFKAIKKSKDG 73 (99)
T ss_pred EEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEec-CCC-----cEEEEEEEEcCCC
Confidence 3678875543 47899999 68899876544432 3468998887532 222 2578888865444
No 139
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=75.75 E-value=30 Score=37.43 Aligned_cols=64 Identities=20% Similarity=0.144 Sum_probs=39.3
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCC-ccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeee
Q 003474 315 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGY-HVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIV 388 (817)
Q Consensus 315 ~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY-~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV 388 (817)
++.... .-+|+-+++|+..|.+--=++. |++ ...|+..+.+. .++++||+-|+++|++|+|=+.
T Consensus 30 ~t~~~k-~yIDfAa~~G~eYvlvD~GW~~-----~~~~~~~d~~~~~~~----~dl~elv~Ya~~KgVgi~lw~~ 94 (273)
T PF10566_consen 30 TTETQK-RYIDFAAEMGIEYVLVDAGWYG-----WEKDDDFDFTKPIPD----FDLPELVDYAKEKGVGIWLWYH 94 (273)
T ss_dssp SHHHHH-HHHHHHHHTT-SEEEEBTTCCG-----S--TTT--TT-B-TT------HHHHHHHHHHTT-EEEEEEE
T ss_pred CHHHHH-HHHHHHHHcCCCEEEecccccc-----ccccccccccccCCc----cCHHHHHHHHHHcCCCEEEEEe
Confidence 666666 6899999999999987222211 111 23444444444 7899999999999999998543
No 140
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=75.63 E-value=21 Score=38.27 Aligned_cols=157 Identities=14% Similarity=0.141 Sum_probs=93.4
Q ss_pred hhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeeccccCCCcc-cc
Q 003474 321 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVL-DG 399 (817)
Q Consensus 321 ~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~s~~~~-~~ 399 (817)
+..+.-|.+-+++.|-+=|-. .....+=.+++++|.+. +.|.++|.=+-+.-+..-.. +.
T Consensus 33 d~~~~~i~~~~f~llVVDps~---------------~g~~~~~~~~eelr~~~----~gg~~pIAYlsIg~ae~yR~Ywd 93 (300)
T COG2342 33 DAYINEILNSPFDLLVVDPSY---------------CGPFNTPWTIEELRTKA----DGGVKPIAYLSIGEAESYRFYWD 93 (300)
T ss_pred cchHHHHhcCCCcEEEEeccc---------------cCCCCCcCcHHHHHHHh----cCCeeEEEEEechhhhhhhhHhh
Confidence 457777888888888665521 12223335688888764 45677777666554433211 00
Q ss_pred CcCCCCCCCCccccCCCCCcccC-CCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCcccccccCccccccCCcc
Q 003474 400 LNMFDGTDGHYFHSGSRGYHWMW-DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYS 478 (817)
Q Consensus 400 l~~fdg~~~~yf~~~~~g~~~~w-~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~ 478 (817)
.....+. +.+.- ...+.| |.....|-.|+-+..+.+.+...++ .|+||.-+|.|....|.. ...
T Consensus 94 ~~w~~~~-p~wLg----~edP~W~Gny~VkYW~~eWkdii~~~l~rL~d-~GfdGvyLD~VD~y~Y~~---------~~~ 158 (300)
T COG2342 94 KYWLTGR-PDWLG----EEDPEWPGNYAVKYWEPEWKDIIRSYLDRLID-QGFDGVYLDVVDAYWYVE---------WND 158 (300)
T ss_pred hhhhcCC-ccccc----CCCCCCCCCceeeccCHHHHHHHHHHHHHHHH-ccCceEEEeeechHHHHH---------Hhc
Confidence 0001111 11111 112334 3356778889999999999999888 799999999997653220 001
Q ss_pred cccCcccChhHHHHHHHHHHHhhccCCCEEEEE
Q 003474 479 EYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIG 511 (817)
Q Consensus 479 ~~~g~~~~~~a~~fl~~~~~~v~~~~P~~~~Ig 511 (817)
..-+.+.....+.|+.++.+.++..+|.+.+|-
T Consensus 159 ~~~~~~~~k~m~~~i~~i~~~~ra~~~~~~Vi~ 191 (300)
T COG2342 159 RETGVNAAKKMVKFIAAIAEYARAANPLFRVIP 191 (300)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCCcEEEEe
Confidence 111222333445789999999999999966663
No 141
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=75.26 E-value=5.4 Score=43.49 Aligned_cols=66 Identities=27% Similarity=0.452 Sum_probs=37.1
Q ss_pred hhhhHHHHcCCCEEEEcCcccCCCC---CCCCCcc--------ccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeecc
Q 003474 322 DVLPRIKRLGYNAVQIMAVQEHSYY---ASFGYHV--------TNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 390 (817)
Q Consensus 322 ~~L~ylk~LGv~~I~LmPi~e~~~~---~s~GY~v--------~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~N 390 (817)
.-|+.+|+-|||+|+++-+.+.... ...|+.+ .||-.+++.| -+-+.+.|+.|.++||.+ ++|+-
T Consensus 34 ~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~Y--F~~~d~~i~~a~~~Gi~~--~lv~~ 109 (289)
T PF13204_consen 34 QYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAY--FDHLDRRIEKANELGIEA--ALVPF 109 (289)
T ss_dssp HHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----H--HHHHHHHHHHHHHTT-EE--EEESS
T ss_pred HHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHH--HHHHHHHHHHHHHCCCeE--EEEEE
Confidence 4699999999999999876654321 1123222 2444455443 578889999999999988 46665
Q ss_pred c
Q 003474 391 H 391 (817)
Q Consensus 391 H 391 (817)
|
T Consensus 110 w 110 (289)
T PF13204_consen 110 W 110 (289)
T ss_dssp -
T ss_pred E
Confidence 5
No 142
>PLN02692 alpha-galactosidase
Probab=75.02 E-value=1.6e+02 Score=33.76 Aligned_cols=94 Identities=21% Similarity=0.205 Sum_probs=53.7
Q ss_pred HHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeeccccCCCccccCcCCCC
Q 003474 326 RIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDG 405 (817)
Q Consensus 326 ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~l~~fdg 405 (817)
-|+++||+.|.|=--+........|..+.| ..+| |..||.|++.+|++|++.=+=.. .|
T Consensus 86 gl~~~Gy~yv~iDDgW~~~~rd~~G~~~~d----~~kF--P~G~k~ladyiH~~GLKfGIy~d---------------~G 144 (412)
T PLN02692 86 GLSKLGYTYVNIDDCWAEIARDEKGNLVPK----KSTF--PSGIKALADYVHSKGLKLGIYSD---------------AG 144 (412)
T ss_pred cchhcCcEEEEEcCCcCCCCCCCCCCeeeC----hhhc--CCcHHHHHHHHHHCCCceEEEec---------------CC
Confidence 468899999986544432211122322222 1233 35699999999999998644211 11
Q ss_pred CCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecC
Q 003474 406 TDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGV 459 (817)
Q Consensus 406 ~~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v 459 (817)
+..|- ...|..+.+...-++.+.+ .|||=+.+|..
T Consensus 145 ~~tC~------------------~~~pGS~g~e~~DA~~fA~-WGvDylK~D~C 179 (412)
T PLN02692 145 YFTCS------------------KTMPGSLGHEEQDAKTFAS-WGIDYLKYDNC 179 (412)
T ss_pred ccccC------------------CCCCCchHHHHHHHHHHHh-cCCCEEecccc
Confidence 11110 0112334455555677766 99999999986
No 143
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=74.74 E-value=9 Score=33.96 Aligned_cols=60 Identities=18% Similarity=0.377 Sum_probs=39.8
Q ss_pred EEEEEec--CCcCEEEEEeecC---CCCC-cccccccCC-CceEEEEeCCCC-CCCCCCCCCCEEEEEEeCCC
Q 003474 185 ITYREWA--PGAKSASLIGDFN---NWNP-NADIMTQNE-FGVWEIFLPNNA-DGSPPIPHGSRVKIHMDTPS 249 (817)
Q Consensus 185 v~fr~WA--P~A~~V~LvgdFN---~W~~-~~~pm~r~~-~GvWei~lp~~~-~g~~~~~~g~~yk~~~~~~~ 249 (817)
++|++-+ .--+.+.|+|+.. +|+. .+.+|+..+ .+.|++.++-.. .+. -..|||.+...+
T Consensus 2 v~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~W~~~v~~~~~~~~-----~~~yKy~~~~~~ 69 (96)
T cd05467 2 VRFQVRCTTQFGQSVYVVGSHPELGNWDPAKALRLNTSNSYPLWTGEIPLPAPEGQ-----VIEYKYVIVDDD 69 (96)
T ss_pred EEEEEEEECCCCCEEEEEeCcHHhCCcChhcCccccCCCCCCcEEEEEEecCCCCC-----eEEEEEEEECCC
Confidence 4565544 3446899999864 7886 457898777 899998876332 111 247888876544
No 144
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=74.61 E-value=9.2 Score=34.62 Aligned_cols=57 Identities=23% Similarity=0.412 Sum_probs=39.6
Q ss_pred EEEEEecCCc--CEEEEEee---cCCCCCc-ccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeC
Q 003474 185 ITYREWAPGA--KSASLIGD---FNNWNPN-ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDT 247 (817)
Q Consensus 185 v~fr~WAP~A--~~V~Lvgd---FN~W~~~-~~pm~r~~~GvWei~lp~~~~g~~~~~~g~~yk~~~~~ 247 (817)
++|++-+|.. +.|.|+|+ ..+|+.. +.+|...+..+|++.+.-.. +. ...|||.+..
T Consensus 2 v~F~i~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~~~~W~~~v~lp~-~~-----~veYKY~i~~ 64 (100)
T cd05817 2 VTFKIHYPTQFGEAVYISGNCNQLGNWNPSKAKRMQWNEGDLWTVDVGIPE-SV-----YIEYKYFVSN 64 (100)
T ss_pred EEEEEEEEcCCCCEEEEEeCcHHHCCCCccccCcccCCCCCCEEEEEEECC-CC-----cEEEEEEEEe
Confidence 5666655543 78999997 5679864 56898878889988775322 21 3589998854
No 145
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=74.29 E-value=57 Score=35.73 Aligned_cols=93 Identities=16% Similarity=0.149 Sum_probs=56.9
Q ss_pred hHHHHcCCCEEEEcCcccC-CCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeeccccCCCccccCcCC
Q 003474 325 PRIKRLGYNAVQIMAVQEH-SYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMF 403 (817)
Q Consensus 325 ~ylk~LGv~~I~LmPi~e~-~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~l~~f 403 (817)
.+.++.|+++|-|-=+... .....|+-. ....+...++.-|++++++|++||+=+
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~g~--------~~~~~~~~~~~~i~~lk~~G~kViiS~---------------- 74 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWGGS--------YPLDQGGWIKSDIAALRAAGGDVIVSF---------------- 74 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCCCC--------CCcccchhHHHHHHHHHHcCCeEEEEe----------------
Confidence 4677899999986533221 122245411 011135678888999999999998831
Q ss_pred CCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEec
Q 003474 404 DGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDG 458 (817)
Q Consensus 404 dg~~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~ 458 (817)
-|....++.. +..-++.+..++.-.++.|++||+-||-
T Consensus 75 GG~~g~~~~~-----------------~~~~~~~~~~a~~~~i~~y~~dgiDfDi 112 (294)
T cd06543 75 GGASGTPLAT-----------------SCTSADQLAAAYQKVIDAYGLTHLDFDI 112 (294)
T ss_pred cCCCCCcccc-----------------CcccHHHHHHHHHHHHHHhCCCeEEEec
Confidence 1111111111 2234566777777788889999999985
No 146
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=73.93 E-value=9.2 Score=35.01 Aligned_cols=64 Identities=17% Similarity=0.165 Sum_probs=41.9
Q ss_pred ccCCcEEeCCcEEEEEecCC--cCEEEEEeecCC--CCCcccccccCC----CceEEEEeCCCCCCCCCCCCCCEEEEEE
Q 003474 174 EKFGFIRSDTGITYREWAPG--AKSASLIGDFNN--WNPNADIMTQNE----FGVWEIFLPNNADGSPPIPHGSRVKIHM 245 (817)
Q Consensus 174 ~~lG~~~~~~gv~fr~WAP~--A~~V~LvgdFN~--W~~~~~pm~r~~----~GvWei~lp~~~~g~~~~~~g~~yk~~~ 245 (817)
.++|+ +-+++|++++. +++|.|+..-.. +.....+|.+.. ...|++.|+... |. ..|.|.+
T Consensus 11 ~p~ga----~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~~~~~~~~~~~i~~~~-~~------~~Y~F~l 79 (116)
T cd02857 11 YPYGA----DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGSDELFDYWEATLPPPT-GR------LRYYFEL 79 (116)
T ss_pred EEcCC----CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeeeCCceeEEEEEEecCC-cE------EEEEEEE
Confidence 37777 55899999775 588888753222 333456887642 357999998542 32 3688888
Q ss_pred eCC
Q 003474 246 DTP 248 (817)
Q Consensus 246 ~~~ 248 (817)
...
T Consensus 80 ~~~ 82 (116)
T cd02857 80 VDD 82 (116)
T ss_pred EcC
Confidence 653
No 147
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=70.67 E-value=7.8 Score=47.43 Aligned_cols=59 Identities=14% Similarity=0.185 Sum_probs=48.8
Q ss_pred CCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCC----CCCCccccccCCCCCCCCHHHHH
Q 003474 311 PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYA----SFGYHVTNFFAPSSRCGTPDDLK 370 (817)
Q Consensus 311 ~~~G~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~----s~GY~v~dy~avd~~~Gt~edlk 370 (817)
-++|+|..+. +.++.+++.|.+.|||+||.....++ |.-|.+.+=|+.+|-|=+++.|-
T Consensus 77 ~GIGDfgdL~-~fvD~~a~~G~~~~QiLPL~~t~~~~~~~dSSPYsp~S~fAlNPlyIdle~L~ 139 (745)
T PLN03236 77 VGAGDFGDLE-ALVDFAAEAGMSVVQLLPVNDTCVHGTFWDSYPYSSLSVHALHPLYLKLKELV 139 (745)
T ss_pred CCcccHHHHH-HHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCCcCcccccccChHHcCHHHhh
Confidence 5789999976 79999999999999999998754222 34799999999999888877664
No 148
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=69.51 E-value=11 Score=45.87 Aligned_cols=84 Identities=20% Similarity=0.248 Sum_probs=54.1
Q ss_pred CcEEEEEecCCcCEEEEEeecC-C-CCCc---ccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCCccccCCc
Q 003474 183 TGITYREWAPGAKSASLIGDFN-N-WNPN---ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGIKDSIPA 257 (817)
Q Consensus 183 ~gv~fr~WAP~A~~V~LvgdFN-~-W~~~---~~pm~r~~~GvWei~lp~~~~g~~~~~~g~~yk~~~~~~~g~~~~~~~ 257 (817)
.|.++++|+|+|+.+.+.|-.+ + |++. ...|.|...|+|...|.+......+...+..|-+.+...+-..+..++
T Consensus 67 ~G~iw~~~~p~~~~g~~y~yr~~g~~~~~~g~~f~~~k~l~dpya~~l~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 146 (697)
T COG1523 67 LGAIWHLWLPGAKPGQVYGYRVHGPYDPEEGHRFDPNKLLLDPYAKALDGDLKWGTPALFGYYYGYQITNLSPDRDSADP 146 (697)
T ss_pred cccEEEEEcCCCceeeEEEEecCCCcCCccCeeeccccccccceeEEeccccccCccccccccccccccccCcccccccc
Confidence 3559999999999999998542 2 5432 356778889999999987765442233344444444433222455566
Q ss_pred cceeeccCC
Q 003474 258 WIKFSVQAP 266 (817)
Q Consensus 258 ~~~~~~~~~ 266 (817)
+.+.++..+
T Consensus 147 ~~Ksvv~~~ 155 (697)
T COG1523 147 YPKSVVIDP 155 (697)
T ss_pred CCceEEecc
Confidence 666666554
No 149
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=68.55 E-value=7.3 Score=42.56 Aligned_cols=48 Identities=23% Similarity=0.456 Sum_probs=29.0
Q ss_pred hhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeecccc
Q 003474 322 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHA 392 (817)
Q Consensus 322 ~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~ 392 (817)
.-+++||+||+|+|-+--|- |.- +-+++.+ .+.+.||.||+|+---+.
T Consensus 57 rDi~~l~~LgiNtIRVY~vd-------------------p~~-nHd~CM~---~~~~aGIYvi~Dl~~p~~ 104 (314)
T PF03198_consen 57 RDIPLLKELGINTIRVYSVD-------------------PSK-NHDECMS---AFADAGIYVILDLNTPNG 104 (314)
T ss_dssp HHHHHHHHHT-SEEEES----------------------TTS---HHHHH---HHHHTT-EEEEES-BTTB
T ss_pred HhHHHHHHcCCCEEEEEEeC-------------------CCC-CHHHHHH---HHHhCCCEEEEecCCCCc
Confidence 56899999999999865543 322 2244444 466689999999865433
No 150
>PLN03059 beta-galactosidase; Provisional
Probab=67.27 E-value=7 Score=48.21 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=39.1
Q ss_pred hhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEe
Q 003474 322 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMD 386 (817)
Q Consensus 322 ~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlD 386 (817)
++|..+|++|+|+|..-=. |.++--. .=.-.|.+..||.+|++.|++.||.|||=
T Consensus 63 d~L~k~Ka~GlNtV~tYV~--------Wn~HEp~--~G~~dF~G~~DL~~Fl~la~e~GLyvilR 117 (840)
T PLN03059 63 DLIQKAKDGGLDVIQTYVF--------WNGHEPS--PGNYYFEDRYDLVKFIKVVQAAGLYVHLR 117 (840)
T ss_pred HHHHHHHHcCCCeEEEEec--------ccccCCC--CCeeeccchHHHHHHHHHHHHcCCEEEec
Confidence 6889999999999974222 2221110 00113456899999999999999999996
No 151
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=66.96 E-value=66 Score=32.58 Aligned_cols=64 Identities=22% Similarity=0.239 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHHc--CcEEEEeeeccccCCCccccCcCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHH
Q 003474 365 TPDDLKSLIDKAHEL--GLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNA 442 (817)
Q Consensus 365 t~edlk~LV~~aH~~--GI~VIlDvV~NH~s~~~~~~l~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~l~~~l 442 (817)
..+.....+.++|++ |++|++=+--. . . ...+ --..+++.|+.+++++
T Consensus 47 ~~~~~~~~i~~l~~~~~g~kv~~sigg~-~------------~--~~~~---------------~~~~~~~~~~~f~~~~ 96 (210)
T cd00598 47 SEEPLKGALEELASKKPGLKVLISIGGW-T------------D--SSPF---------------TLASDPASRAAFANSL 96 (210)
T ss_pred ccHHHHHHHHHHHHhCCCCEEEEEEcCC-C------------C--CCCc---------------hhhcCHHHHHHHHHHH
Confidence 345667778888887 99999865210 0 0 0000 1235678888899999
Q ss_pred HHHHHhCCccEEEEec
Q 003474 443 RWWLEEYKFDGFRFDG 458 (817)
Q Consensus 443 ~~Wl~e~gvDGfR~D~ 458 (817)
.-+++++++||+=+|-
T Consensus 97 ~~~v~~~~~DGidiD~ 112 (210)
T cd00598 97 VSFLKTYGFDGVDIDW 112 (210)
T ss_pred HHHHHHcCCCceEEee
Confidence 9999999999999995
No 152
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=65.89 E-value=9.2 Score=43.83 Aligned_cols=59 Identities=29% Similarity=0.414 Sum_probs=39.6
Q ss_pred HhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccC-CCCCCC---CHHHHHHHHHHHHHcCcEEEEeee
Q 003474 320 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFA-PSSRCG---TPDDLKSLIDKAHELGLLVLMDIV 388 (817)
Q Consensus 320 ~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~a-vd~~~G---t~edlk~LV~~aH~~GI~VIlDvV 388 (817)
+++-+.++|++|+|+|.|. + ||....... .+|.+= ...=+.+.|+.|.++||+|++|+.
T Consensus 75 ~~~~~~~ik~~G~n~VRiP-i---------~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H 137 (407)
T COG2730 75 TEEDFDQIKSAGFNAVRIP-I---------GYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLH 137 (407)
T ss_pred hhhHHHHHHHcCCcEEEcc-c---------chhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEec
Confidence 3478999999999999852 2 222211010 344443 233566779999999999999964
No 153
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=65.17 E-value=12 Score=45.74 Aligned_cols=64 Identities=6% Similarity=0.060 Sum_probs=52.5
Q ss_pred CCCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccC---CCCCCCCCccccccCCCCCCCCHHHHHHHHH
Q 003474 310 EPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEH---SYYASFGYHVTNFFAPSSRCGTPDDLKSLID 374 (817)
Q Consensus 310 ~~~~G~~~~~~~~~L~ylk~LGv~~I~LmPi~e~---~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~ 374 (817)
+-++|+|..+. +.++.+++.|.+.|+|+|+... ..+.+.-|.+.+=|+.+|-|=.++.+-++..
T Consensus 158 ~~GIGDfgdl~-~l~d~~a~~G~~~~qlnPlha~~p~~p~~~SPYsp~Sr~alNPlyI~~e~l~e~~~ 224 (695)
T PRK11052 158 NWGIGDFGDLK-QMLEDVAKRGGDFIGLNPIHALYPANPESASPYSPSSRRWLNVIYIDVNAVEDFQQ 224 (695)
T ss_pred CCCeecHHHHH-HHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCcccccccccChHHcCHHHHhhhhh
Confidence 45789999977 7999999999999999999842 1234567999999999999999888877643
No 154
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=65.08 E-value=23 Score=31.55 Aligned_cols=56 Identities=14% Similarity=0.228 Sum_probs=38.5
Q ss_pred EEEEEecCCc---CEEEEEeec---CCCCCcccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeC
Q 003474 185 ITYREWAPGA---KSASLIGDF---NNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDT 247 (817)
Q Consensus 185 v~fr~WAP~A---~~V~LvgdF---N~W~~~~~pm~r~~~GvWei~lp~~~~g~~~~~~g~~yk~~~~~ 247 (817)
++|++-+|+. +.++|+|+- -+|+. +.+|...+.+.|++.+.-.. +. ...|||.+..
T Consensus 3 v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~-~~~l~~~~~~~W~~~v~lp~-~~-----~ieYky~~~~ 64 (95)
T cd05813 3 VTFRVHYITHSDAQLVAVTGDHEELGSWHS-YIPLQYVKDGFWSASVSLPV-DT-----HVEWKFVLVE 64 (95)
T ss_pred EEEEEEeeeCCCCeEEEEEcChHHHCCCCc-cccCcCCCCCCEEEEEEecC-CC-----cEEEEEEEEc
Confidence 6888877642 567899864 47986 78998778899977764221 22 3578887743
No 155
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=63.81 E-value=14 Score=42.24 Aligned_cols=40 Identities=25% Similarity=0.463 Sum_probs=33.1
Q ss_pred cCC-CCCCCCC-----CHHHHHHHHHHHHHHHHhCCccEEEEecCCcc
Q 003474 421 MWD-SRLFNYG-----SWEVLRFLLSNARWWLEEYKFDGFRFDGVTSM 462 (817)
Q Consensus 421 ~w~-~~~ln~~-----~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m 462 (817)
.|| ...|+|+ +|..+++|.+..+.-.+ -++|||+|..++-
T Consensus 359 vWGDcVKLRYG~~peDsP~LW~~M~~Yt~~~A~--iF~G~RiDNCHST 404 (423)
T PF14701_consen 359 VWGDCVKLRYGSKPEDSPFLWKHMKEYTELMAK--IFHGFRIDNCHST 404 (423)
T ss_pred ecCceeeecCCCCCCCCHHHHHHHHHHHHHHHH--hcCeeeeecCCCC
Confidence 354 4678885 69999999999998888 8999999998764
No 156
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=62.88 E-value=14 Score=39.03 Aligned_cols=46 Identities=26% Similarity=0.486 Sum_probs=35.5
Q ss_pred hhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEee
Q 003474 322 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDI 387 (817)
Q Consensus 322 ~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDv 387 (817)
+-|.++|+||+++|+|+-=+ ..+ +.++..+||+.++++|++|+-.+
T Consensus 75 ~Yl~~~k~lGf~~IEiS~G~---------------~~i-----~~~~~~rlI~~~~~~g~~v~~Ev 120 (237)
T TIGR03849 75 EYLNECDELGFEAVEISDGS---------------MEI-----SLEERCNLIERAKDNGFMVLSEV 120 (237)
T ss_pred HHHHHHHHcCCCEEEEcCCc---------------cCC-----CHHHHHHHHHHHHhCCCeEeccc
Confidence 45669999999999975321 111 35889999999999999999653
No 157
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=62.83 E-value=12 Score=42.01 Aligned_cols=59 Identities=19% Similarity=0.311 Sum_probs=38.0
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeecc
Q 003474 315 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 390 (817)
Q Consensus 315 ~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~N 390 (817)
++.... +.|...+++||+.|+.. +.. |.. ..=-..+.|++|++.||++||.||+||-+.
T Consensus 12 ~~~~~~-~yi~~a~~~Gf~~iFTS-L~i-pe~--------------~~~~~~~~~~~l~~~a~~~~~~v~~Disp~ 70 (357)
T PF05913_consen 12 SFEENK-AYIEKAAKYGFKRIFTS-LHI-PED--------------DPEDYLERLKELLKLAKELGMEVIADISPK 70 (357)
T ss_dssp -HHHHH-HHHHHHHCTTEEEEEEE-E------------------------HHHHHHHHHHHHHHCT-EEEEEE-CC
T ss_pred CHHHHH-HHHHHHHHCCCCEEECC-CCc-CCC--------------CHHHHHHHHHHHHHHHHHCCCEEEEECCHH
Confidence 455555 57778889999999753 111 100 001135899999999999999999998654
No 158
>PF09260 DUF1966: Domain of unknown function (DUF1966); InterPro: IPR015340 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This domain is found in various fungal alpha-amylase proteins. Its exact function has not, as yet, been defined []. ; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0016052 carbohydrate catabolic process; PDB: 2AAA_A 2GUY_A 2TAA_B 6TAA_A 2GVY_B 7TAA_A 3KWX_A.
Probab=62.12 E-value=18 Score=32.42 Aligned_cols=70 Identities=20% Similarity=0.234 Sum_probs=37.7
Q ss_pred CCcEEEEEcCc----EEEEEEcCCCCcccceEEccc----CCC-ceEEEEcCCCCCcCCccccCCCcceeccccccCCCC
Q 003474 720 GDRVIVFERGN----LVFVFNFHWNSSYSDYRVGCL----KPG-KYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQP 790 (817)
Q Consensus 720 ~~~Vlaf~R~~----llvV~Nf~~~~~~~~~~i~v~----~~g-~~~~vl~sd~~~~gG~~~~~~~~~~~~~~~~~~~~~ 790 (817)
+++.+||.|+. +|+|+|...+.+...|.+.++ .+| .+.+||+.....- +..
T Consensus 5 d~~~~a~rKG~~g~qvi~vltN~Gs~~~~~~~~~v~~~~f~~g~~v~dVlsc~~~tv--------------------~~~ 64 (91)
T PF09260_consen 5 DDSTIAFRKGPDGSQVIVVLTNQGSNSGGSYTLTVPNTGFSAGTEVTDVLSCTSYTV--------------------DSN 64 (91)
T ss_dssp ETTEEEEEESSTTT-EEEEEE-S-T-T---EEEEESS----TT-EEEETTTTEEEE----------------------TT
T ss_pred CCcEEEEEeCCCCCEEEEEEeCCCcCCCCcEEEEEcCCCCCCCCEEEEEecCCEEEE--------------------CCC
Confidence 46799999966 888886663324556777665 233 4667665322111 223
Q ss_pred eEEEEEEcCceEEEEEEeC
Q 003474 791 HSFLVYAPSRTAVVYALAD 809 (817)
Q Consensus 791 ~~i~l~lpp~s~~Vl~~~~ 809 (817)
+.+.|.+-.+.-.||-+..
T Consensus 65 G~l~v~m~~G~P~Vl~P~~ 83 (91)
T PF09260_consen 65 GTLTVPMSNGEPRVLYPAS 83 (91)
T ss_dssp S-EEEEESTT--EEEEECH
T ss_pred CEEEEEEcCCceEEEEEHH
Confidence 4577888777777877653
No 159
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=59.06 E-value=21 Score=31.59 Aligned_cols=34 Identities=32% Similarity=0.463 Sum_probs=23.1
Q ss_pred CcCEEEEEeecCCCCCc-ccccccCC----CceEEEEeC
Q 003474 193 GAKSASLIGDFNNWNPN-ADIMTQNE----FGVWEIFLP 226 (817)
Q Consensus 193 ~A~~V~LvgdFN~W~~~-~~pm~r~~----~GvWei~lp 226 (817)
+|.+|+|.+-||+|... ...|.+.. .|.|+++|.
T Consensus 17 g~~~v~~~~G~n~W~~~~~~~m~~~~~~~~~~~~~~tv~ 55 (87)
T PF03423_consen 17 GAPNVHLHGGFNRWTHVPGFGMTKMCVPDEGGWWKATVD 55 (87)
T ss_dssp -S-EEEEEETTS-B-SSS-EE-EEESS---TTEEEEEEE
T ss_pred CCCcEEEEecCCCCCcCCCCCcceeeeeecCCEEEEEEE
Confidence 58899999989999765 46677654 799999994
No 160
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=57.79 E-value=16 Score=40.37 Aligned_cols=93 Identities=24% Similarity=0.328 Sum_probs=45.4
Q ss_pred HHHHHHHHcCcEEEEeeeccccCCCccccCc-CCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhC
Q 003474 371 SLIDKAHELGLLVLMDIVHSHASNNVLDGLN-MFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEY 449 (817)
Q Consensus 371 ~LV~~aH~~GI~VIlDvV~NH~s~~~~~~l~-~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~ 449 (817)
..|++||++|++|+==+.+.+-.... ... ...+ ...+ .-.+-+.|++++ +.|
T Consensus 46 ~widaAHrnGV~vLGTiife~~~~~~--~~~~ll~~--------~~~g-------------~~~~A~kLi~ia----~~y 98 (311)
T PF03644_consen 46 GWIDAAHRNGVKVLGTIIFEWGGGAE--WCEELLEK--------DEDG-------------SFPYADKLIEIA----KYY 98 (311)
T ss_dssp HHHHHHHHTT--EEEEEEEEEE--HH--HHHHHT-----------TTS---------------HHHHHHHHHH----HHH
T ss_pred hhHHHHHhcCceEEEEEEecCCchHH--HHHHHHcC--------Cccc-------------ccHHHHHHHHHH----HHc
Confidence 57899999999998776663221100 000 0110 1111 112334455554 458
Q ss_pred CccEEEEecCCcccccccCccccccCCcccccCcccC-hhHHHHHHHHHHHhhccCCCEEEE
Q 003474 450 KFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATD-VDAVVYLMLVNDMIHGLYPEAVSI 510 (817)
Q Consensus 450 gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~-~~a~~fl~~~~~~v~~~~P~~~~I 510 (817)
|+||+=+--=..+ ....+ ..-+.|++.+++.+++ .|+..++
T Consensus 99 GFDGw~iN~E~~~-------------------~~~~~~~~l~~F~~~l~~~~~~-~~~~~v~ 140 (311)
T PF03644_consen 99 GFDGWLINIETPL-------------------SGPEDAENLIDFLKYLRKEAHE-NPGSEVI 140 (311)
T ss_dssp T--EEEEEEEESS-------------------TTGGGHHHHHHHHHHHHHHHHH-T-T-EEE
T ss_pred CCCceEEEecccC-------------------CchhHHHHHHHHHHHHHHHhhc-CCCcEEE
Confidence 9999966532211 00012 2345899999999999 8876555
No 161
>PTZ00445 p36-lilke protein; Provisional
Probab=55.92 E-value=24 Score=36.68 Aligned_cols=65 Identities=17% Similarity=0.201 Sum_probs=41.7
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEE----cCcccCCCCCCCCCccccccCCCCCCCC--HHHHHHHHHHHHHcCcEEEE
Q 003474 315 TYANFRDDVLPRIKRLGYNAVQI----MAVQEHSYYASFGYHVTNFFAPSSRCGT--PDDLKSLIDKAHELGLLVLM 385 (817)
Q Consensus 315 ~~~~~~~~~L~ylk~LGv~~I~L----mPi~e~~~~~s~GY~v~dy~avd~~~Gt--~edlk~LV~~aH~~GI~VIl 385 (817)
+..+.++...+.|++.||.+|-+ +=|--|. -||+--+ +-+.++++ ..+|+.|+.++.++||+|++
T Consensus 26 ~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~Hs----gG~~~~~--~~~~~~~~~~tpefk~~~~~l~~~~I~v~V 96 (219)
T PTZ00445 26 NPHESADKFVDLLNECGIKVIASDFDLTMITKHS----GGYIDPD--NDDIRVLTSVTPDFKILGKRLKNSNIKISV 96 (219)
T ss_pred CHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhc----ccccCCC--cchhhhhccCCHHHHHHHHHHHHCCCeEEE
Confidence 34455556778899999999953 1111122 2444433 22344443 34599999999999999975
No 162
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=55.35 E-value=35 Score=37.65 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHHHHhCCccEEEEec
Q 003474 430 GSWEVLRFLLSNARWWLEEYKFDGFRFDG 458 (817)
Q Consensus 430 ~~peV~~~l~~~l~~Wl~e~gvDGfR~D~ 458 (817)
.+++.|+.+++++.-|++++++||+-+|-
T Consensus 105 ~~~~~r~~Fi~siv~~l~~~~fDGidiDw 133 (322)
T cd06548 105 ATEASRAKFADSAVDFIRKYGFDGIDIDW 133 (322)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEECC
Confidence 46888999999999999999999999984
No 163
>TIGR03356 BGL beta-galactosidase.
Probab=54.13 E-value=31 Score=39.86 Aligned_cols=101 Identities=14% Similarity=0.170 Sum_probs=63.1
Q ss_pred CCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeecccc
Q 003474 313 INTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHA 392 (817)
Q Consensus 313 ~G~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~ 392 (817)
+..|.-.. +-+..||+||+|++-+. |.-+.... -|-. . ..-...+-++++|++|.++||.+|+++.| .
T Consensus 50 ~d~y~~y~-eDi~l~~~~G~~~~R~s-i~Wsri~p-~g~~-----~--~n~~~~~~y~~~i~~l~~~gi~pivtL~H--f 117 (427)
T TIGR03356 50 CDHYHRYE-EDVALMKELGVDAYRFS-IAWPRIFP-EGTG-----P--VNPKGLDFYDRLVDELLEAGIEPFVTLYH--W 117 (427)
T ss_pred ccHHHhHH-HHHHHHHHcCCCeEEcc-cchhhccc-CCCC-----C--cCHHHHHHHHHHHHHHHHcCCeeEEeecc--C
Confidence 34555555 78999999999998753 21111100 0100 0 11123577889999999999999999874 2
Q ss_pred CCCccccCcCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 003474 393 SNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYK 450 (817)
Q Consensus 393 s~~~~~~l~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~g 450 (817)
.. +.++... . -+.++++.+.+.+.++.-+++||
T Consensus 118 d~-------------P~~l~~~-g-----------Gw~~~~~~~~f~~ya~~~~~~~~ 150 (427)
T TIGR03356 118 DL-------------PQALEDR-G-----------GWLNRDTAEWFAEYAAVVAERLG 150 (427)
T ss_pred Cc-------------cHHHHhc-C-----------CCCChHHHHHHHHHHHHHHHHhC
Confidence 11 1222111 1 24567888888888888888776
No 164
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=53.11 E-value=43 Score=30.36 Aligned_cols=60 Identities=20% Similarity=0.490 Sum_probs=39.7
Q ss_pred EEEEEecCC--cCEEEEEeec---CCCCCc-ccccccC----CCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCC
Q 003474 185 ITYREWAPG--AKSASLIGDF---NNWNPN-ADIMTQN----EFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 250 (817)
Q Consensus 185 v~fr~WAP~--A~~V~LvgdF---N~W~~~-~~pm~r~----~~GvWei~lp~~~~g~~~~~~g~~yk~~~~~~~g 250 (817)
++|++=++. -+.|.|+|+- .+|+.. +.+|... +.++|++.+.-.. +. ...|||.+...++
T Consensus 9 V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~-~~-----~veYKy~~~~~~~ 78 (106)
T cd05811 9 VTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPA-GT-----SFEYKFIRKESDG 78 (106)
T ss_pred EEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCC-CC-----cEEEEEEEEcCCC
Confidence 677765443 3689999975 469864 5788653 4689998886432 21 3578988765444
No 165
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=52.97 E-value=1.9e+02 Score=32.84 Aligned_cols=28 Identities=11% Similarity=0.311 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHcCcEEEEeeecccc-CCC
Q 003474 366 PDDLKSLIDKAHELGLLVLMDIVHSHA-SNN 395 (817)
Q Consensus 366 ~edlk~LV~~aH~~GI~VIlDvV~NH~-s~~ 395 (817)
.+.||+|++++|+.|-++++-+. |. +..
T Consensus 82 i~~~k~l~davh~~G~~i~~QL~--H~~Gr~ 110 (382)
T cd02931 82 IRTAKEMTERVHAYGTKIFLQLT--AGFGRV 110 (382)
T ss_pred hHHHHHHHHHHHHcCCEEEEEcc--CcCCCc
Confidence 47899999999999999998774 64 443
No 166
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=52.81 E-value=35 Score=37.61 Aligned_cols=56 Identities=14% Similarity=0.152 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHHHHHhCCccEEEEecCCcccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhcc
Q 003474 430 GSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGL 503 (817)
Q Consensus 430 ~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~~~v~~~ 503 (817)
.+++.|+.+++++.-|++++++||+-+|--. .. .. + .....-..|+++++..+++.
T Consensus 87 ~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~-~~------------~~----~-~d~~~~~~ll~~lr~~l~~~ 142 (334)
T smart00636 87 SDPASRKKFIDSIVSFLKKYGFDGIDIDWEY-PG------------AR----G-DDRENYTALLKELREALDKE 142 (334)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEECCcC-CC------------CC----c-cHHHHHHHHHHHHHHHHHHh
Confidence 5678899999999999999999999999421 10 00 0 11122347899999988764
No 167
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=52.44 E-value=31 Score=38.60 Aligned_cols=63 Identities=24% Similarity=0.263 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHHHHHHHhCCccEEEEecCCcccccccCccccccCCcccccCcccChh-HHHHHHHHHHHhhccCCCEE
Q 003474 430 GSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVD-AVVYLMLVNDMIHGLYPEAV 508 (817)
Q Consensus 430 ~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~-a~~fl~~~~~~v~~~~P~~~ 508 (817)
.+++.|+.+++++.-|++++++||+-+|--. . +.. .+...+.+ -+.|++++++.+++..++.+
T Consensus 92 ~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~-p------------~~~---~~~~~d~~~~~~ll~~lr~~l~~~~~~~~ 155 (362)
T cd02872 92 ASPENRKTFIKSAIAFLRKYGFDGLDLDWEY-P------------GQR---GGPPEDKENFVTLLKELREAFEPEAPRLL 155 (362)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeeeeeec-c------------ccC---CCCHHHHHHHHHHHHHHHHHHHhhCcCeE
Confidence 4578899999999999999999999998321 0 000 01111222 34789999999987644443
No 168
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=52.13 E-value=50 Score=36.84 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHcCcEEEEeeec
Q 003474 366 PDDLKSLIDKAHELGLLVLMDIVH 389 (817)
Q Consensus 366 ~edlk~LV~~aH~~GI~VIlDvV~ 389 (817)
.+.||+|++++|+.|-++++-+.|
T Consensus 79 i~~~k~l~~~vh~~Ga~i~~QL~H 102 (341)
T PF00724_consen 79 IPGLKKLADAVHAHGAKIIAQLWH 102 (341)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEE-
T ss_pred HHHHHHHHHHHHhcCccceeeccc
Confidence 689999999999999999999764
No 169
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=51.56 E-value=19 Score=33.59 Aligned_cols=39 Identities=26% Similarity=0.380 Sum_probs=29.1
Q ss_pred hhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEE
Q 003474 321 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 385 (817)
Q Consensus 321 ~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIl 385 (817)
.+.++.+.++|+.+||+.|= .+-+++++.|+++||+||-
T Consensus 69 ~~~v~~~~~~g~~~v~~~~g--------------------------~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 69 PEIVDEAAALGVKAVWLQPG--------------------------AESEELIEAAREAGIRVIG 107 (116)
T ss_dssp HHHHHHHHHHT-SEEEE-TT--------------------------S--HHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHcCCCEEEEEcc--------------------------hHHHHHHHHHHHcCCEEEe
Confidence 36899999999999998773 4456889999999999984
No 170
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=51.15 E-value=1.4e+02 Score=33.73 Aligned_cols=132 Identities=14% Similarity=0.068 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHcCcEEEEeeeccccCCCccccCcCCCCCCCCccccCCCCCcccCCCCCCCCCCHH---HHHHHHHHH
Q 003474 366 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWE---VLRFLLSNA 442 (817)
Q Consensus 366 ~edlk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~l~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~pe---V~~~l~~~l 442 (817)
.+.||+|++++|+.|=++++-+. |.+.........+.+.. ....... ....+..+ --....| +.+.+..++
T Consensus 77 i~~~~~l~d~vh~~Ga~i~~QL~--H~Gr~~~~~~~~~~~~~--~~~ps~~-~~~~~~~p-~~mt~~eI~~ii~~f~~AA 150 (361)
T cd04747 77 LAGWKKVVDEVHAAGGKIAPQLW--HVGAMRKLGTPPFPDVP--PLSPSGL-VGPGKPVG-REMTEADIDDVIAAFARAA 150 (361)
T ss_pred HHHHHHHHHHHHhcCCEEEEecc--CCCCCcCcccCccCCCc--eeCCCCC-CcCCCCCC-ccCCHHHHHHHHHHHHHHH
Confidence 68999999999999999999875 55543211000011100 0000000 00000000 0112222 333444455
Q ss_pred HHHHHhCCccEEEEecCCcccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccC-CCE
Q 003474 443 RWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLY-PEA 507 (817)
Q Consensus 443 ~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~~~v~~~~-P~~ 507 (817)
+.-.+ .|+||.-+-++...+-.. =+...+...-++|.|.-+| ...|+.++.+.|++.. |++
T Consensus 151 ~~a~~-aGfDgVeih~ahGyLl~q-FLSp~~N~RtDeYGGslen--R~Rf~~eii~air~~vG~d~ 212 (361)
T cd04747 151 ADARR-LGFDGIELHGAHGYLIDQ-FFWAGTNRRADGYGGSLAA--RSRFAAEVVKAIRAAVGPDF 212 (361)
T ss_pred HHHHH-cCCCEEEEecccchHHHH-hcCCCCCCCCCCCCCCHHH--HHHHHHHHHHHHHHHcCCCC
Confidence 55555 799999999987432110 0001111122344333222 3567778887777754 443
No 171
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=50.46 E-value=23 Score=42.26 Aligned_cols=58 Identities=22% Similarity=0.248 Sum_probs=41.4
Q ss_pred hhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeee
Q 003474 321 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIV 388 (817)
Q Consensus 321 ~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV 388 (817)
+++|..+|++|+|+|+--=.+- - |--.+.. -.|.+.-||.+||+.||+.|+.|||=+=
T Consensus 52 ~~~i~k~k~~Gln~IqtYVfWn-~----Hep~~g~-----y~FsG~~DlvkFikl~~~~GLyv~LRiG 109 (649)
T KOG0496|consen 52 PDLIKKAKAGGLNVIQTYVFWN-L----HEPSPGK-----YDFSGRYDLVKFIKLIHKAGLYVILRIG 109 (649)
T ss_pred HHHHHHHHhcCCceeeeeeecc-c----ccCCCCc-----ccccchhHHHHHHHHHHHCCeEEEecCC
Confidence 4689999999999998432221 1 1001111 2467788999999999999999999764
No 172
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=49.80 E-value=62 Score=35.15 Aligned_cols=132 Identities=20% Similarity=0.297 Sum_probs=79.0
Q ss_pred HhhHhhhhhHHHHcCCCEEEEcCcccCC-CCCCCCCccccccCCCCCCCC---HHHHHHHHHHHHHcCcEEEEeeecccc
Q 003474 317 ANFRDDVLPRIKRLGYNAVQIMAVQEHS-YYASFGYHVTNFFAPSSRCGT---PDDLKSLIDKAHELGLLVLMDIVHSHA 392 (817)
Q Consensus 317 ~~~~~~~L~ylk~LGv~~I~LmPi~e~~-~~~s~GY~v~dy~avd~~~Gt---~edlk~LV~~aH~~GI~VIlDvV~NH~ 392 (817)
++..+++..-||+-|+|++- .+.. .++.--|.-.|- +.-..++ --|.+.+|+.|.++||.+|.-+|.=--
T Consensus 76 kk~~de~fk~ikdn~~Na~V----iD~Kdd~G~lty~s~d~--~~~~~~sv~~f~Di~~~iKkaKe~giY~IARiVvFKD 149 (400)
T COG1306 76 KKRLDELFKLIKDNNINAFV----IDVKDDYGELTYPSSDE--INKYTKSVNKFKDIEPVIKKAKENGIYAIARIVVFKD 149 (400)
T ss_pred hhHHHHHHHHHHhCCCCEEE----EEecCCCccEeccccch--hhhhhhccccccccHHHHHHHHhcCeEEEEEEEEeee
Confidence 34556889999999999984 3332 233344555442 2222232 357888999999999999999985211
Q ss_pred CCCc-ccc--CcCCC-CCCCCccccC-----CCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCc
Q 003474 393 SNNV-LDG--LNMFD-GTDGHYFHSG-----SRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTS 461 (817)
Q Consensus 393 s~~~-~~~--l~~fd-g~~~~yf~~~-----~~g~~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~ 461 (817)
..-. ..+ +.-+. |.+..-|..+ ..+.|| .+--++.+++|=+.+++--++ ||||-..||-+..
T Consensus 150 ~~l~~~n~fk~av~~~gKpw~~~~ngaLrKe~~~ehW------Vd~y~~~~WeYNvtIAKEa~~-fGfdEiQFDYIRF 220 (400)
T COG1306 150 TILAKENPFKIAVYKDGKPWKAFTNGALRKESDGEHW------VDAYDKNLWEYNVTIAKEAAK-FGFDEIQFDYIRF 220 (400)
T ss_pred eeEEeecCceEEEEcCCCcchhhhcccccccccceee------ecccchhhhhhhHHHHHHHHH-cCccceeeeEEEc
Confidence 1100 000 00111 1111111111 123333 345578899999999998888 9999999998753
No 173
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=48.72 E-value=75 Score=33.96 Aligned_cols=67 Identities=16% Similarity=0.137 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHHHHHcCcEEEEeeeccccCCCccccCcCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHH
Q 003474 362 RCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSN 441 (817)
Q Consensus 362 ~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~l~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~l~~~ 441 (817)
..+...++.+=|.+|++.|++|||=+ . |.. .+ . |. .. -.+++-|+.++++
T Consensus 54 ~~~~~~~~~~~i~~~~~~g~KVllSi--G--------G~~--~~---~-fs-------------~~-a~~~~~r~~f~~s 103 (256)
T cd06546 54 DHPRFTTLWTELAILQSSGVKVMGML--G--------GAA--PG---S-FS-------------RL-DDDDEDFERYYGQ 103 (256)
T ss_pred CcchhhHHHHHHHHHHhCCCEEEEEE--C--------CCC--CC---C-cc-------------cc-cCCHHHHHHHHHH
Confidence 33444566666778899999999843 1 100 00 0 10 01 1345666667778
Q ss_pred HHHHHHhCCccEEEEec
Q 003474 442 ARWWLEEYKFDGFRFDG 458 (817)
Q Consensus 442 l~~Wl~e~gvDGfR~D~ 458 (817)
+.-++++|++||+=||-
T Consensus 104 ~~~~~~~~~~DGiDiDw 120 (256)
T cd06546 104 LRDMIRRRGLDGLDLDV 120 (256)
T ss_pred HHHHHHHhCCCceEEee
Confidence 88888889999999984
No 174
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=48.61 E-value=1.7e+02 Score=32.72 Aligned_cols=28 Identities=14% Similarity=0.449 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHcCcEEEEeeeccccCCC
Q 003474 366 PDDLKSLIDKAHELGLLVLMDIVHSHASNN 395 (817)
Q Consensus 366 ~edlk~LV~~aH~~GI~VIlDvV~NH~s~~ 395 (817)
.+.||+|++++|+.|-++++-+ +|.+..
T Consensus 76 i~~~~~l~~~vh~~g~~~~~Ql--~H~G~~ 103 (343)
T cd04734 76 IPGFRRLAEAVHAHGAVIMIQL--THLGRR 103 (343)
T ss_pred HHHHHHHHHHHHhcCCeEEEec--cCCCcC
Confidence 5789999999999999999965 555543
No 175
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=48.60 E-value=1.7e+02 Score=33.12 Aligned_cols=124 Identities=12% Similarity=0.068 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHHHcCcEEEEeeeccccCCCccccCcCCCCCCCCccccCCCCCcc--cCCCCCCCCCCH---HHHHHHH
Q 003474 365 TPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHW--MWDSRLFNYGSW---EVLRFLL 439 (817)
Q Consensus 365 t~edlk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~l~~fdg~~~~yf~~~~~g~~~--~w~~~~ln~~~p---eV~~~l~ 439 (817)
..+.||+|++++|++|-++++-+. |.+...... ..+. .. +....-.... .+...--..... ++.+-+.
T Consensus 81 ~i~~~~~l~~~vh~~G~~i~~QL~--H~G~~~~~~---~~~~-~~-~~ps~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~ 153 (370)
T cd02929 81 DIRNLAAMTDAVHKHGALAGIELW--HGGAHAPNR---ESRE-TP-LGPSQLPSEFPTGGPVQAREMDKDDIKRVRRWYV 153 (370)
T ss_pred HHHHHHHHHHHHHHCCCeEEEecc--cCCCCCCcc---CCCC-Cc-cCCCCCCCCccccCCCCCccCCHHHHHHHHHHHH
Confidence 368999999999999999999876 665532110 0000 00 0000000000 000000011222 3444444
Q ss_pred HHHHHHHHhCCccEEEEecCCcccccccCccccccC-----CcccccCcccChhHHHHHHHHHHHhhccC
Q 003474 440 SNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTG-----NYSEYFGFATDVDAVVYLMLVNDMIHGLY 504 (817)
Q Consensus 440 ~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~-----~~~~~~g~~~~~~a~~fl~~~~~~v~~~~ 504 (817)
++++.- .+.|+||.-+-++...+- ..|-. .-++|.|.-+| ...|+.++-+.|++..
T Consensus 154 ~AA~ra-~~aGfDgVEih~ahGyLl------~QFlSp~~N~RtD~yGGslen--R~Rf~~eii~aIr~~v 214 (370)
T cd02929 154 DAALRA-RDAGFDIVYVYAAHGYLP------LQFLLPRYNKRTDEYGGSLEN--RARFWRETLEDTKDAV 214 (370)
T ss_pred HHHHHH-HHcCCCEEEEcccccchH------HHhhCccccCCccccCCChHh--hhHHHHHHHHHHHHHc
Confidence 555544 448999999998863221 11221 11334332232 3567777777777754
No 176
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=47.96 E-value=41 Score=37.03 Aligned_cols=59 Identities=10% Similarity=0.160 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHHHHhCCccEEEEecCCcccccccCccccccCCcccccCcccChh-HHHHHHHHHHHhhccC
Q 003474 430 GSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVD-AVVYLMLVNDMIHGLY 504 (817)
Q Consensus 430 ~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~-a~~fl~~~~~~v~~~~ 504 (817)
.+++.|+.+++++.-+++++|+||+-+|.=.... ..+...+.+ -..|++++++.+++..
T Consensus 88 ~~~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~----------------~~~~~~d~~~~~~~l~el~~~l~~~~ 147 (318)
T cd02876 88 NDEQEREKLIKLLVTTAKKNHFDGIVLEVWSQLA----------------AYGVPDKRKELIQLVIHLGETLHSAN 147 (318)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCcEEEechhhhc----------------ccCCHHHHHHHHHHHHHHHHHHhhcC
Confidence 5688899999999999999999999998311100 000011222 2478999999998653
No 177
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=47.87 E-value=28 Score=37.00 Aligned_cols=48 Identities=31% Similarity=0.455 Sum_probs=34.8
Q ss_pred hhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeee
Q 003474 321 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIV 388 (817)
Q Consensus 321 ~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV 388 (817)
++-|.++|+|||++|+++-=+ ..+ +.++..++|+.|.++|++|+-.+=
T Consensus 87 ~~yl~~~k~lGf~~IEiSdGt---------------i~l-----~~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 87 DEYLEECKELGFDAIEISDGT---------------IDL-----PEEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp HHHHHHHHHCT-SEEEE--SS---------------S--------HHHHHHHHHHHCCTTSEEEEEES
T ss_pred HHHHHHHHHcCCCEEEecCCc---------------eeC-----CHHHHHHHHHHHHHCCCEEeeccc
Confidence 467899999999999974211 011 358899999999999999997753
No 178
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=47.71 E-value=42 Score=36.84 Aligned_cols=64 Identities=19% Similarity=0.211 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHHHHHhCCccEEEEecCCcccccccCccccccCCcccccCcccChh-HHHHHHHHHHHhhccC----C
Q 003474 431 SWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVD-AVVYLMLVNDMIHGLY----P 505 (817)
Q Consensus 431 ~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~-a~~fl~~~~~~v~~~~----P 505 (817)
+++-|+.+++++.-|+++||+||+-||-=..... +...+.+ -..|+++++..+++.. .
T Consensus 96 ~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~-----------------~~~~~~~~~~~~l~~L~~~l~~~~~~~~~ 158 (343)
T PF00704_consen 96 NPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSS-----------------GDPQDKDNYTAFLKELRKALKRANRSGKG 158 (343)
T ss_dssp SHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTST-----------------SSTTHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred cHHHHHHHHHhhhhhhcccCcceeeeeeeecccc-----------------ccchhhhhhhhhhhhhhhhhcccccccce
Confidence 4677899999999999999999999985321100 0001222 2478999998888752 3
Q ss_pred CEEEEE
Q 003474 506 EAVSIG 511 (817)
Q Consensus 506 ~~~~Ig 511 (817)
-.+.++
T Consensus 159 ~~ls~a 164 (343)
T PF00704_consen 159 YILSVA 164 (343)
T ss_dssp SEEEEE
T ss_pred eEEeec
Confidence 455555
No 179
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=47.65 E-value=2.6e+02 Score=31.47 Aligned_cols=126 Identities=12% Similarity=0.040 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHcCcEEEEeeeccccCCCccccCcCCCCCCCCccccCCCCC---cccCCC----------CCCCCCC-
Q 003474 366 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGY---HWMWDS----------RLFNYGS- 431 (817)
Q Consensus 366 ~edlk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~l~~fdg~~~~yf~~~~~g~---~~~w~~----------~~ln~~~- 431 (817)
.+.||++++++|++|-++++-+. |.+........ ..+.. . +....... ...|+. ..--...
T Consensus 78 i~~~~~lad~vH~~Ga~i~~QL~--H~Gr~~~~~~~-~~~~~-~-~apS~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~ 152 (362)
T PRK10605 78 IAAWKKITAGVHAEGGHIAVQLW--HTGRISHASLQ-PGGQA-P-VAPSAINAGTRTSLRDENGQAIRVETSTPRALELE 152 (362)
T ss_pred HHHHHHHHHHHHhCCCEEEEecc--CCCCCCCcccC-CCCCC-e-ECCCCcCcCcccccccccccccccCCCCCccCCHH
Confidence 68899999999999999999755 66654311110 00100 0 00000000 000000 0001111
Q ss_pred --HHHHHHHHHHHHHHHHhCCccEEEEecCCcccccccCccccccCCc-----ccccCcccChhHHHHHHHHHHHhhccC
Q 003474 432 --WEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNY-----SEYFGFATDVDAVVYLMLVNDMIHGLY 504 (817)
Q Consensus 432 --peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~-----~~~~g~~~~~~a~~fl~~~~~~v~~~~ 504 (817)
.++.+.+..+++.-.+ .|+||.-+.+++..+- ..|...+ ++|.|.-+| ...|+.++-+.|++.-
T Consensus 153 eI~~ii~~f~~AA~rA~~-AGfDGVEIh~ahGyLl------~qFLSp~~N~RtDeYGGslEN--R~Rf~~Eiv~aVr~~v 223 (362)
T PRK10605 153 EIPGIVNDFRQAIANARE-AGFDLVELHSAHGYLL------HQFLSPSSNQRTDQYGGSVEN--RARLVLEVVDAGIAEW 223 (362)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCCEEEEcccccchH------HHhcCCcCCCCCCcCCCcHHH--HHHHHHHHHHHHHHHc
Confidence 2333444445555555 8999999999875432 2333222 334333333 3567888887777654
Q ss_pred C
Q 003474 505 P 505 (817)
Q Consensus 505 P 505 (817)
+
T Consensus 224 g 224 (362)
T PRK10605 224 G 224 (362)
T ss_pred C
Confidence 4
No 180
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=46.00 E-value=42 Score=36.66 Aligned_cols=54 Identities=19% Similarity=0.190 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCccEEEEecCCcccccccCccccccCCcccccCcccChh-HHHHHHHHHHHhhcc
Q 003474 429 YGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVD-AVVYLMLVNDMIHGL 503 (817)
Q Consensus 429 ~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~-a~~fl~~~~~~v~~~ 503 (817)
..+++.|+.+++++..+++++|+||+-+|-= .+. ..+.+ -..|++++++.+++.
T Consensus 83 l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E-~~~--------------------~~d~~~~~~fl~eL~~~l~~~ 137 (298)
T cd06549 83 LADPSARAKFIANIAAYLERNQADGIVLDFE-ELP--------------------ADDLPKYVAFLSELRRRLPAQ 137 (298)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCCCEEEecC-CCC--------------------hhHHHHHHHHHHHHHHHhhhc
Confidence 3678889999999999999999999999962 110 01222 247999999999875
No 181
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=45.99 E-value=2e+02 Score=31.93 Aligned_cols=28 Identities=14% Similarity=0.277 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHcCcEEEEeeeccccCCC
Q 003474 366 PDDLKSLIDKAHELGLLVLMDIVHSHASNN 395 (817)
Q Consensus 366 ~edlk~LV~~aH~~GI~VIlDvV~NH~s~~ 395 (817)
.+.||+|++++|+.|-++++-+- |.+..
T Consensus 81 i~~~~~l~~~vh~~G~~~~~Ql~--h~G~~ 108 (338)
T cd04733 81 LEAFREWAAAAKANGALIWAQLN--HPGRQ 108 (338)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcc--CCCcC
Confidence 68999999999999999998865 56554
No 182
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=44.69 E-value=73 Score=28.64 Aligned_cols=58 Identities=14% Similarity=0.257 Sum_probs=36.6
Q ss_pred EEEEEecCC--cCEEEEEee---cCCCCCc-ccccccC---CCceEEEEeCCCCCCCCCCCCCCEEEEEEeCC
Q 003474 185 ITYREWAPG--AKSASLIGD---FNNWNPN-ADIMTQN---EFGVWEIFLPNNADGSPPIPHGSRVKIHMDTP 248 (817)
Q Consensus 185 v~fr~WAP~--A~~V~Lvgd---FN~W~~~-~~pm~r~---~~GvWei~lp~~~~g~~~~~~g~~yk~~~~~~ 248 (817)
++|++-+.. -+++.|+|+ ..+|+.. +.+|... +..+|++.|.... + ....|||.+...
T Consensus 2 l~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~-~-----~~veYky~v~~~ 68 (101)
T cd05815 2 LSFKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPP-G-----FSSEYNYYVVDD 68 (101)
T ss_pred EEEEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCC-C-----CcEEEEEEEEcC
Confidence 456655443 378899985 3578864 5688532 3458988876432 2 136899988543
No 183
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=44.21 E-value=51 Score=36.04 Aligned_cols=53 Identities=11% Similarity=0.162 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHHHHHhCCccEEEEecCCcccccccCccccccCCcccccCcccChhH-HHHHHHHHHHhhc
Q 003474 430 GSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDA-VVYLMLVNDMIHG 502 (817)
Q Consensus 430 ~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a-~~fl~~~~~~v~~ 502 (817)
.+++.|+.+++++.-+++++|+||+-+|=- |. +...+.+. +.|++++++.+++
T Consensus 88 ~~~~~R~~fi~siv~~l~~~~fDGidiDWE-----------------~P---~~~~d~~n~~~ll~elr~~l~~ 141 (299)
T cd02879 88 SDPTARKAFINSSIKVARKYGFDGLDLDWE-----------------FP---SSQVEMENFGKLLEEWRAAVKD 141 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceeeccc-----------------CC---CChhHHHHHHHHHHHHHHHHHH
Confidence 568889999999999999999999999831 00 11122222 4789999999874
No 184
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=43.68 E-value=43 Score=31.23 Aligned_cols=61 Identities=15% Similarity=0.127 Sum_probs=41.5
Q ss_pred EeCCcEEEEEecC--CcCEEEEE-eecCCC----CCccccccc----CCCceEEEEeCCCCCCCCCCCCCCEEEEEEeC
Q 003474 180 RSDTGITYREWAP--GAKSASLI-GDFNNW----NPNADIMTQ----NEFGVWEIFLPNNADGSPPIPHGSRVKIHMDT 247 (817)
Q Consensus 180 ~~~~gv~fr~WAP--~A~~V~Lv-gdFN~W----~~~~~pm~r----~~~GvWei~lp~~~~g~~~~~~g~~yk~~~~~ 247 (817)
...+-+++|+++. .+++|.|+ ||-.+| .....+|++ ..+..|+++|+.... -.+|.|.|.+
T Consensus 18 ~~~~~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~-------r~~Y~F~l~~ 89 (120)
T PF02903_consen 18 YDGDTLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEK-------RLRYYFELED 89 (120)
T ss_dssp ECTTEEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTS-------EEEEEEEEEE
T ss_pred cCCCEEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCC-------eEEEEEEEEe
Confidence 3556688999864 57899997 676655 233457875 357899999985432 2478898887
No 185
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=43.62 E-value=47 Score=35.90 Aligned_cols=60 Identities=18% Similarity=0.132 Sum_probs=44.4
Q ss_pred hhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeeccc
Q 003474 321 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 391 (817)
Q Consensus 321 ~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH 391 (817)
++.+..||++|++.|.+. +| .. ..-|-.+.+. .+.++..+.++.||+.||.|...+++.+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~--~E-~~-------~~~~~~i~~~-~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl 182 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHN--LD-TS-------QEFYSNIIST-HTYDDRVDTLENAKKAGLKVCSGGIFGL 182 (296)
T ss_pred HHHHHHHHHcCCCEEEEc--cc-CC-------HHHHhhccCC-CCHHHHHHHHHHHHHcCCEEEEeEEEeC
Confidence 478999999999999876 33 11 1122234333 5889999999999999999988887754
No 186
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=42.87 E-value=39 Score=36.12 Aligned_cols=51 Identities=18% Similarity=0.270 Sum_probs=35.4
Q ss_pred hhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEE
Q 003474 322 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 385 (817)
Q Consensus 322 ~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIl 385 (817)
+.++.++++||+.|+|.+...+. ...+.++ +.++++++.+.+.+.||.|..
T Consensus 20 e~~~~~~~~G~~~iEl~~~~~~~-----~~~~~~~--------~~~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 20 ERLVFAKELGFDFVEMSVDESDE-----RLARLDW--------SKEERLSLVKAIYETGVRIPS 70 (284)
T ss_pred HHHHHHHHcCCCeEEEecCCccc-----ccccccC--------CHHHHHHHHHHHHHcCCCceE
Confidence 68999999999999995321110 0011111 457899999999999998863
No 187
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=42.81 E-value=91 Score=28.29 Aligned_cols=61 Identities=13% Similarity=0.218 Sum_probs=40.5
Q ss_pred cEEEEEecC----CcCEEEEEeec---CCCCCcc---c-ccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCC
Q 003474 184 GITYREWAP----GAKSASLIGDF---NNWNPNA---D-IMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 250 (817)
Q Consensus 184 gv~fr~WAP----~A~~V~LvgdF---N~W~~~~---~-pm~r~~~GvWei~lp~~~~g~~~~~~g~~yk~~~~~~~g 250 (817)
-++|++=+. --+.|+|+|+- -+|+... . +|.......|++.++.. .|. -..|||.+...+|
T Consensus 4 ~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~~~~~W~~~~~lp-~~~-----~veyK~v~~~~~g 75 (103)
T cd05820 4 PVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCPNWPDWFVVASVP-AGT-----YIEFKFLKAPADG 75 (103)
T ss_pred cEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccCCCCCEEEEEEcC-CCC-----cEEEEEEEECCCC
Confidence 378887643 23689999964 4798642 2 77666778899888642 222 3579998866544
No 188
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=42.78 E-value=3.7e+02 Score=29.80 Aligned_cols=68 Identities=18% Similarity=0.091 Sum_probs=40.0
Q ss_pred hhhhhHHHH---cCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeeccccCCC
Q 003474 321 DDVLPRIKR---LGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNN 395 (817)
Q Consensus 321 ~~~L~ylk~---LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~s~~ 395 (817)
++.+.|.++ =|+..|..-.+.-++....+.+++.-+. . .-.+.||+|++++|+.|-++++-+. |.+..
T Consensus 33 ~~~~~~y~~rA~gg~glii~~~~~v~~~~~~~~~~~~~~~---d--~~~~~~~~l~~~vh~~G~~~~~QL~--H~G~~ 103 (336)
T cd02932 33 DWHLVHYGSRALGGAGLVIVEATAVSPEGRITPGDLGLWN---D--EQIEALKRIVDFIHSQGAKIGIQLA--HAGRK 103 (336)
T ss_pred HHHHHHHHHHHcCCCcEEEEcceEECCCcCCCCCceeecC---H--HHHHHHHHHHHHHHhcCCcEEEEcc--CCCcC
Confidence 445565554 4777775554444443211222221110 0 1368999999999999999998876 45543
No 189
>PLN03231 putative alpha-galactosidase; Provisional
Probab=41.52 E-value=5.7e+02 Score=28.89 Aligned_cols=141 Identities=18% Similarity=0.133 Sum_probs=74.8
Q ss_pred HhhHhhhhhHHHHcCCCEEEEcCcccCCC--------CCCCCCc---cccccCCCC-CCCC---HHHHHHHHHHHHHcCc
Q 003474 317 ANFRDDVLPRIKRLGYNAVQIMAVQEHSY--------YASFGYH---VTNFFAPSS-RCGT---PDDLKSLIDKAHELGL 381 (817)
Q Consensus 317 ~~~~~~~L~ylk~LGv~~I~LmPi~e~~~--------~~s~GY~---v~dy~avd~-~~Gt---~edlk~LV~~aH~~GI 381 (817)
+..++-+-..||++||+.|-|==-+-.+. ..+.+|. ......++| +|=+ -..||.|.+.+|++|+
T Consensus 21 ~~~Ad~v~~gL~~~GY~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~~G~l~pd~~rFPs~~~~~G~k~lADyvHs~GL 100 (357)
T PLN03231 21 LENAKIVSETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGRPLPDPKRWPSTTGGKGFAPIAAKVHALGL 100 (357)
T ss_pred HHHHHHHHcchHHhCCEEEEECCcccccccccccccccccccccccCCCCCcccCcccCCCCccccCcHHHHHHHHhCCc
Confidence 33443334589999999997753332211 0122332 222233332 3321 2479999999999999
Q ss_pred EEEEeeecc-ccCCCccccC--cCCCCCCCCcccc-CC--CCCcccCCC---CCCCCCCHHHHHHHHHHHHHHHHhCCcc
Q 003474 382 LVLMDIVHS-HASNNVLDGL--NMFDGTDGHYFHS-GS--RGYHWMWDS---RLFNYGSWEVLRFLLSNARWWLEEYKFD 452 (817)
Q Consensus 382 ~VIlDvV~N-H~s~~~~~~l--~~fdg~~~~yf~~-~~--~g~~~~w~~---~~ln~~~peV~~~l~~~l~~Wl~e~gvD 452 (817)
|.=+=.-.. ++.... ... ..+.|+....+.. +- ......|.. .-+|.+++..++|+.+.++.+.+ -|||
T Consensus 101 KfGIY~~~G~~tca~~-~~~pi~G~~Gs~g~~~~a~Dia~~~~~c~~~~~~~~~v~~~~~gaq~y~~~~a~~fA~-WGVD 178 (357)
T PLN03231 101 KLGIHVMRGISTTAVK-KKTPILGAFKSNGHAWNAKDIALMDQACPWMQQCFVGVNTSSEGGKLFIQSLYDQYAS-WGID 178 (357)
T ss_pred ceEEEecCCccchhcc-cCCccCCCCcccccccchhhhccccccccccccccccccccchhHHHHHHHHHHHHHH-hCCC
Confidence 875432221 111100 000 0111211111100 00 001112222 24688999999999999999998 9999
Q ss_pred EEEEecC
Q 003474 453 GFRFDGV 459 (817)
Q Consensus 453 GfR~D~v 459 (817)
=+.+|..
T Consensus 179 ylK~D~c 185 (357)
T PLN03231 179 FIKHDCV 185 (357)
T ss_pred EEeeccc
Confidence 9999964
No 190
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=41.49 E-value=1.2e+02 Score=33.33 Aligned_cols=87 Identities=18% Similarity=0.195 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHcCcEEEEeeeccccCCCccccCcCCCCCCCCccccCCCCCcccCCC-CCCCC-CCHHHHHHHHHHHH
Q 003474 366 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDS-RLFNY-GSWEVLRFLLSNAR 443 (817)
Q Consensus 366 ~edlk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~l~~fdg~~~~yf~~~~~g~~~~w~~-~~ln~-~~peV~~~l~~~l~ 443 (817)
.+.+|++++++|+.|-++++-+ +|.+....... .+.. . +............. ..+.- +=.++.+.+..+++
T Consensus 76 ~~~~~~~~~~vh~~g~~~~~Ql--~h~G~~~~~~~---~~~~-~-~~~s~~~~~~~~~~~~~mt~~ei~~~i~~~~~aA~ 148 (327)
T cd02803 76 IPGLRKLTEAVHAHGAKIFAQL--AHAGRQAQPNL---TGGP-P-PAPSAIPSPGGGEPPREMTKEEIEQIIEDFAAAAR 148 (327)
T ss_pred HHHHHHHHHHHHhCCCHhhHHh--hCCCcCCCCcC---CCCC-c-cCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 6899999999999999998776 55655431111 1100 0 00000000000000 01111 01244455566677
Q ss_pred HHHHhCCccEEEEecCC
Q 003474 444 WWLEEYKFDGFRFDGVT 460 (817)
Q Consensus 444 ~Wl~e~gvDGfR~D~v~ 460 (817)
...+ .|+||+-+.++.
T Consensus 149 ~a~~-aGfDgveih~~~ 164 (327)
T cd02803 149 RAKE-AGFDGVEIHGAH 164 (327)
T ss_pred HHHH-cCCCEEEEcchh
Confidence 7776 899999999874
No 191
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=39.99 E-value=39 Score=38.19 Aligned_cols=66 Identities=15% Similarity=0.277 Sum_probs=47.4
Q ss_pred HhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcE-EEEeeeccccCCC
Q 003474 320 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHASNN 395 (817)
Q Consensus 320 ~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~-VIlDvV~NH~s~~ 395 (817)
.+++|..|+++|+|.|.| +|+.... .-.-.+ .|-.+.++..+.++.+++.||. |-+|++++.-+.+
T Consensus 107 ~~e~l~~l~~~G~~rvsl-GvQS~~~--------~~L~~l-~R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt 173 (375)
T PRK05628 107 SPEFFAALRAAGFTRVSL-GMQSAAP--------HVLAVL-DRTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGES 173 (375)
T ss_pred CHHHHHHHHHcCCCEEEE-ecccCCH--------HHHHHc-CCCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCCC
Confidence 457899999999999975 3432211 111122 3556889999999999999999 9999998765443
No 192
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=39.61 E-value=43 Score=36.92 Aligned_cols=60 Identities=17% Similarity=0.172 Sum_probs=43.4
Q ss_pred hhhhhHHHHcCCC-EEEEcCcccCCCCCCCCCccccc-cCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeecc
Q 003474 321 DDVLPRIKRLGYN-AVQIMAVQEHSYYASFGYHVTNF-FAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 390 (817)
Q Consensus 321 ~~~L~ylk~LGv~-~I~LmPi~e~~~~~s~GY~v~dy-~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~N 390 (817)
++.|..++++|++ .|.|-. |+.. ..-. ..++-.+ |.+++.+.++.+|++||.|.+++.++
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~--ES~~-------d~~L~~~inKg~-t~~~~~~ai~~~~~~Gi~v~~~~i~G 178 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGL--ETAN-------DRIREKSINKGS-TFEDFIRAAELARKYGAGVKAYLLFK 178 (313)
T ss_pred HHHHHHHHHcCCCEEEEEec--CcCC-------HHHHHHhhCCCC-CHHHHHHHHHHHHHcCCcEEEEEEec
Confidence 4789999999998 576432 1111 1111 1344445 88999999999999999999999875
No 193
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=38.18 E-value=3.5e+02 Score=30.28 Aligned_cols=129 Identities=14% Similarity=0.154 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHcCcEEEEeeeccccCCCccccCcCCCCCCCCccccCCCCCcccC-CC-CCCCCC-CHHHHHHHHHHH
Q 003474 366 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMW-DS-RLFNYG-SWEVLRFLLSNA 442 (817)
Q Consensus 366 ~edlk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~l~~fdg~~~~yf~~~~~g~~~~w-~~-~~ln~~-~peV~~~l~~~l 442 (817)
.+.+|+|++++|+.|-++++-+ +|.+........ .+. .. .....-...... .. +.+... =.++.+.+..++
T Consensus 77 i~~~~~l~~~vh~~G~~i~~QL--~h~G~~~~~~~~--~~~-~~-~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA 150 (353)
T cd04735 77 IPGLRKLAQAIKSKGAKAILQI--FHAGRMANPALV--PGG-DV-VSPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEAT 150 (353)
T ss_pred hHHHHHHHHHHHhCCCeEEEEe--cCCCCCCCcccc--CCC-ce-ecCCCCcccCCCCCCCccCCHHHHHHHHHHHHHHH
Confidence 6899999999999999998665 555543211110 000 00 000000000000 00 111110 123444455566
Q ss_pred HHHHHhCCccEEEEecCCcccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccC
Q 003474 443 RWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLY 504 (817)
Q Consensus 443 ~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~~~v~~~~ 504 (817)
+.-.+ .|+||.-+-+++..+-... +...+...-++|.|.- .....|+.++-+.|++.-
T Consensus 151 ~~a~~-aGfDgVeih~ahGyLl~qF-lsp~~N~R~D~yGGsl--enR~r~~~eii~~vr~~v 208 (353)
T cd04735 151 RRAIE-AGFDGVEIHGANGYLIQQF-FSPHSNRRTDEWGGSL--ENRMRFPLAVVKAVQEVI 208 (353)
T ss_pred HHHHH-cCCCEEEEccccchHHHHh-cCCccCCCCcccCCcH--HHHHHHHHHHHHHHHHHh
Confidence 66544 8999999998753321100 0111111123343332 234567777777776654
No 194
>PRK01060 endonuclease IV; Provisional
Probab=38.11 E-value=63 Score=34.58 Aligned_cols=48 Identities=10% Similarity=0.189 Sum_probs=35.9
Q ss_pred hhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEE
Q 003474 322 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLV 383 (817)
Q Consensus 322 ~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~V 383 (817)
+.|+.++++||++|+|.+--.+ .+. +..-+++++++|.+.+.+.||++
T Consensus 16 ~~l~~~~~~G~d~vEl~~~~p~------~~~--------~~~~~~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 16 GAVAEAAEIGANAFMIFTGNPQ------QWK--------RKPLEELNIEAFKAACEKYGISP 63 (281)
T ss_pred HHHHHHHHcCCCEEEEECCCCC------CCc--------CCCCCHHHHHHHHHHHHHcCCCC
Confidence 6899999999999998653211 111 11238889999999999999985
No 195
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=38.08 E-value=61 Score=38.15 Aligned_cols=63 Identities=22% Similarity=0.321 Sum_probs=46.5
Q ss_pred hHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCc-EEEEeeeccc
Q 003474 319 FRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGL-LVLMDIVHSH 391 (817)
Q Consensus 319 ~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI-~VIlDvV~NH 391 (817)
+.+++|..|+++|++.|.|.+ +... ..-.-.+ .|-.|.++..+.++.|++.|+ .|-+|+.++.
T Consensus 267 it~e~L~~Lk~~Gv~RISIGv-QS~~--------d~vLk~i-gR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GL 330 (488)
T PRK08207 267 ITEEKLEVLKKYGVDRISINP-QTMN--------DETLKAI-GRHHTVEDIIEKFHLAREMGFDNINMDLIIGL 330 (488)
T ss_pred CCHHHHHHHHhcCCCeEEEcC-CcCC--------HHHHHHh-CCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCC
Confidence 345799999999999998654 2111 1111233 455789999999999999999 7889999753
No 196
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=38.03 E-value=29 Score=37.87 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHHcCcEEEEee
Q 003474 365 TPDDLKSLIDKAHELGLLVLMDI 387 (817)
Q Consensus 365 t~edlk~LV~~aH~~GI~VIlDv 387 (817)
++++|+++.+-||++||.|.||-
T Consensus 143 s~~el~ai~~~a~~~gl~lhmDG 165 (290)
T PF01212_consen 143 SLEELRAISELAREHGLPLHMDG 165 (290)
T ss_dssp -HHHHHHHHHHHHHHT-EEEEEE
T ss_pred CHHHHHHHHHHHHhCceEEEEeh
Confidence 47999999999999999999994
No 197
>PRK06256 biotin synthase; Validated
Probab=37.19 E-value=46 Score=36.86 Aligned_cols=61 Identities=13% Similarity=0.062 Sum_probs=45.1
Q ss_pred HhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeeccc
Q 003474 320 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 391 (817)
Q Consensus 320 ~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH 391 (817)
.++.+..||++|++.|.+. .|+ . ..-|-.+.+. .+.++..+.++.||+.||.|...+++.+
T Consensus 151 ~~e~l~~LkeaG~~~v~~~--lEt-s-------~~~~~~i~~~-~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl 211 (336)
T PRK06256 151 TEEQAERLKEAGVDRYNHN--LET-S-------RSYFPNVVTT-HTYEDRIDTCEMVKAAGIEPCSGGIIGM 211 (336)
T ss_pred CHHHHHHHHHhCCCEEecC--Ccc-C-------HHHHhhcCCC-CCHHHHHHHHHHHHHcCCeeccCeEEeC
Confidence 3478999999999999763 232 1 1223344443 4789999999999999999988888765
No 198
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=36.50 E-value=1.6e+02 Score=34.65 Aligned_cols=104 Identities=12% Similarity=0.259 Sum_probs=62.7
Q ss_pred CCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeeccc
Q 003474 312 IINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 391 (817)
Q Consensus 312 ~~G~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH 391 (817)
.+..|.-+. +-+..+++||+|+.-+.=-+.--. . -|.. - .+.-...+=.++||++|+++||.+|+.+. |
T Consensus 66 A~D~Yhry~-eDi~l~~~lG~~~yR~si~WsRi~-P-~g~~----~--~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~--H 134 (474)
T PRK09852 66 AIDFYHRYK-EDIALMAEMGFKVFRTSIAWSRLF-P-QGDE----L--TPNQQGIAFYRSVFEECKKYGIEPLVTLC--H 134 (474)
T ss_pred cCchhhhhH-HHHHHHHHcCCCeEEeeceeeeee-e-CCCC----C--CCCHHHHHHHHHHHHHHHHcCCEEEEEee--C
Confidence 345566665 689999999999987543221100 0 0100 0 01112356678999999999999999876 3
Q ss_pred cCCCccccCcCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 003474 392 ASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYK 450 (817)
Q Consensus 392 ~s~~~~~~l~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~g 450 (817)
..- +.++..... -|.|+++.+++.+.++..+++||
T Consensus 135 ~~~-------------P~~l~~~~G-----------GW~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 135 FDV-------------PMHLVTEYG-----------SWRNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred CCC-------------CHHHHHhcC-----------CCCCHHHHHHHHHHHHHHHHHhc
Confidence 321 122211001 24567888888888888887765
No 199
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=36.32 E-value=5.9e+02 Score=27.61 Aligned_cols=59 Identities=20% Similarity=0.131 Sum_probs=35.7
Q ss_pred hHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCC--CCCCCHHHHHHHHHHHHHcCcEEEEe
Q 003474 325 PRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPS--SRCGTPDDLKSLIDKAHELGLLVLMD 386 (817)
Q Consensus 325 ~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd--~~~Gt~edlk~LV~~aH~~GI~VIlD 386 (817)
.|..+-.|+.|-|.=+..++. -|+-..||-... +.++.-.+|.+-|+.|+++|++|||=
T Consensus 18 ~~C~~~~~dii~i~Fl~~~~~---~~~p~~n~~~~c~~~~~~~c~~~~~dI~~cq~~G~KVlLS 78 (280)
T cd02877 18 EYCDTGNYDIVNISFLNVFGS---GGTPGLNFAGHCGGSTYPNCPQLGADIKHCQSKGKKVLLS 78 (280)
T ss_pred HHhCCCCccEEEEEeEcccCC---CCCcccCccccCcccccccchhHHHHHHHHHHCCCEEEEE
Confidence 444555688887654444432 233333432221 11113468999999999999999995
No 200
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=36.23 E-value=1.4e+02 Score=26.46 Aligned_cols=58 Identities=16% Similarity=0.184 Sum_probs=36.0
Q ss_pred EEEEEe--cCCcCEEEEEeec---CCCCCcccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCC
Q 003474 185 ITYREW--APGAKSASLIGDF---NNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 250 (817)
Q Consensus 185 v~fr~W--AP~A~~V~LvgdF---N~W~~~~~pm~r~~~GvWei~lp~~~~g~~~~~~g~~yk~~~~~~~g 250 (817)
++|++= ..--++++|+|+- .+|+ .+.+|.-. .+.|++.+.-.. +. ...|||.+...+|
T Consensus 4 v~F~~~~~~~~Gq~l~v~G~~~~LG~W~-~~~~l~~~-~~~W~~~~~l~~-~~-----~ieyKy~~~~~~~ 66 (92)
T cd05818 4 LQVRLDHQVKFGEHVAILGSTKELGSWK-KKVPMNWT-ENGWVCDLELDG-GE-----LVEYKFVIVKRDG 66 (92)
T ss_pred EEEEEEEEcCCCCEEEEEeChHHHCCCC-CCCccccC-CCCEEEEEEeCC-CC-----cEEEEEEEEcCCC
Confidence 455543 2334689999975 5898 44577654 467988875322 21 3589998865544
No 201
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=35.78 E-value=3.7e+02 Score=30.03 Aligned_cols=152 Identities=12% Similarity=0.073 Sum_probs=72.5
Q ss_pred HHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeeccccCCCccccCcCCCCCC
Q 003474 328 KRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTD 407 (817)
Q Consensus 328 k~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~l~~fdg~~ 407 (817)
.+=|+..|..-.+.-++....+.+++.- + +. .-...||+|++++|+.|-++++-+. |.+.... ..+.
T Consensus 47 A~gG~GlIi~~~~~v~~~~~~~~~~~~~-~--~d--~~i~~~r~l~d~vh~~G~~i~~QL~--H~G~~~~-----~~~~- 113 (337)
T PRK13523 47 AAGQVGLVIVEATAVLPEGRISDKDLGI-W--DD--EHIEGLHKLVTFIHDHGAKAAIQLA--HAGRKAE-----LEGD- 113 (337)
T ss_pred HcCCCeEEEECCeEECccccCCCCceec-C--CH--HHHHHHHHHHHHHHhcCCEEEEEcc--CCCCCCC-----CCCC-
Confidence 4457888866555444432111111110 0 11 1268999999999999999998875 4544321 0110
Q ss_pred CCccccCCCCCcccCCCCCCCCCCHH---HHHHHHHHHHHHHHhCCccEEEEecCCcccccccCccccccCC----cccc
Q 003474 408 GHYFHSGSRGYHWMWDSRLFNYGSWE---VLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGN----YSEY 480 (817)
Q Consensus 408 ~~yf~~~~~g~~~~w~~~~ln~~~pe---V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~----~~~~ 480 (817)
. ....... ........-.....| +.+.+..+++.-.+ .|+||.-+-+++..+- ..|... -.+.
T Consensus 114 -~-~~ps~~~-~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~-aGfDgVeih~ahGyLl------~qFlSp~~N~RtD~ 183 (337)
T PRK13523 114 -I-VAPSAIP-FDEKSKTPVEMTKEQIKETVLAFKQAAVRAKE-AGFDVIEIHGAHGYLI------NEFLSPLSNKRTDE 183 (337)
T ss_pred -c-cCCCCCC-CCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEEccccchHH------HHhcCCccCCcCCC
Confidence 0 0000000 000000000122223 33334445555555 8999999998853221 122221 1222
Q ss_pred cCcccChhHHHHHHHHHHHhhcc
Q 003474 481 FGFATDVDAVVYLMLVNDMIHGL 503 (817)
Q Consensus 481 ~g~~~~~~a~~fl~~~~~~v~~~ 503 (817)
||+. -.....|+.++.+.|++.
T Consensus 184 yGGs-lenR~Rf~~eii~~ir~~ 205 (337)
T PRK13523 184 YGGS-PENRYRFLREIIDAVKEV 205 (337)
T ss_pred CCCC-HHHHHHHHHHHHHHHHHh
Confidence 3433 223456777777777665
No 202
>PLN02411 12-oxophytodienoate reductase
Probab=34.86 E-value=5.4e+02 Score=29.35 Aligned_cols=28 Identities=18% Similarity=0.424 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCcEEEEeeeccccCCC
Q 003474 366 PDDLKSLIDKAHELGLLVLMDIVHSHASNN 395 (817)
Q Consensus 366 ~edlk~LV~~aH~~GI~VIlDvV~NH~s~~ 395 (817)
.+.+|+|++++|+.|-++++-+. |.+..
T Consensus 86 i~~~~~l~~avH~~G~~i~~QL~--H~Gr~ 113 (391)
T PLN02411 86 VEAWKKVVDAVHAKGSIIFCQLW--HVGRA 113 (391)
T ss_pred HHHHHHHHHHHHhcCCEEEEecc--CCCCC
Confidence 57899999999999999999876 55554
No 203
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=34.84 E-value=81 Score=32.42 Aligned_cols=43 Identities=12% Similarity=0.315 Sum_probs=29.6
Q ss_pred hhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEE
Q 003474 321 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLV 383 (817)
Q Consensus 321 ~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~V 383 (817)
+.-+..||+||.+.|=++|+-- +-..+||+.+.++|-++||.+
T Consensus 138 etAiaml~dmG~~SiKffPm~G--------------------l~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 138 ETAIAMLKDMGGSSIKFFPMGG--------------------LKHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp HHHHHHHHHTT--EEEE---TT--------------------TTTHHHHHHHHHHHHHCT-EE
T ss_pred HHHHHHHHHcCCCeeeEeecCC--------------------cccHHHHHHHHHHHHHcCcee
Confidence 3578899999999999988731 124689999999999998876
No 204
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=34.21 E-value=88 Score=28.11 Aligned_cols=49 Identities=18% Similarity=0.354 Sum_probs=33.1
Q ss_pred cCEEEEEeecC---CCCCc-ccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCC
Q 003474 194 AKSASLIGDFN---NWNPN-ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTP 248 (817)
Q Consensus 194 A~~V~LvgdFN---~W~~~-~~pm~r~~~GvWei~lp~~~~g~~~~~~g~~yk~~~~~~ 248 (817)
-+.|+|+|+.. +|+.. +.+|.......|++.|.-.. +. ...|||.+...
T Consensus 15 Ge~l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp~-~~-----~veyKyv~~~~ 67 (97)
T cd05810 15 GQSVYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLPA-ST-----NVEWKCLKRNE 67 (97)
T ss_pred CCeEEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcCC-CC-----eEEEEEEEEcC
Confidence 36889999754 79853 56787777789998886321 21 35788866544
No 205
>PRK07094 biotin synthase; Provisional
Probab=34.14 E-value=60 Score=35.69 Aligned_cols=61 Identities=11% Similarity=0.030 Sum_probs=44.7
Q ss_pred hhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeeccc
Q 003474 321 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 391 (817)
Q Consensus 321 ~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH 391 (817)
++.+..|++.|++.|.+ .+ |+. +..-|-.+.+ -.+.++..+.++.||+.||.|-.++++.+
T Consensus 129 ~e~l~~Lk~aG~~~v~~-gl-Es~-------~~~~~~~i~~-~~s~~~~~~~i~~l~~~Gi~v~~~~iiGl 189 (323)
T PRK07094 129 YEEYKAWKEAGADRYLL-RH-ETA-------DKELYAKLHP-GMSFENRIACLKDLKELGYEVGSGFMVGL 189 (323)
T ss_pred HHHHHHHHHcCCCEEEe-cc-ccC-------CHHHHHHhCC-CCCHHHHHHHHHHHHHcCCeecceEEEEC
Confidence 46899999999999873 32 221 1222333444 36789999999999999999988888764
No 206
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=33.76 E-value=98 Score=32.16 Aligned_cols=59 Identities=14% Similarity=0.249 Sum_probs=40.6
Q ss_pred hhhhHHHHcCCCEEEEcCcccCCCCC--CC--CCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEE
Q 003474 322 DVLPRIKRLGYNAVQIMAVQEHSYYA--SF--GYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 385 (817)
Q Consensus 322 ~~L~ylk~LGv~~I~LmPi~e~~~~~--s~--GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIl 385 (817)
+....|+++|+..|+|+|........ .. -|...+.-. =+.++++++.+.+.++|+.|++
T Consensus 149 ~ia~~l~~l~~~~~~llpyh~~g~~Ky~~lg~~y~~~~~~~-----~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 149 QALDVLIPLGIKQIHLLPFHQYGEPKYRLLGKTWSMKEVPA-----PSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred HHHHHHHHcCCceEEEecCCccchhHHHHcCCcCccCCCCC-----cCHHHHHHHHHHHHHcCCeEEe
Confidence 56678889999999999987643211 01 132222211 2578999999999999999974
No 207
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=33.50 E-value=1.8e+02 Score=33.94 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHHcCcEEEEee-eccccCC
Q 003474 365 TPDDLKSLIDKAHELGLLVLMDI-VHSHASN 394 (817)
Q Consensus 365 t~edlk~LV~~aH~~GI~VIlDv-V~NH~s~ 394 (817)
|++|.+++|+-|.-|||+||-.+ ++.|++.
T Consensus 248 T~eDv~evV~yarlRGIRVlpEfD~PgHt~s 278 (542)
T KOG2499|consen 248 TREDVSEVVEYARLRGIRVLPEFDTPGHTGS 278 (542)
T ss_pred cHHHHHHHHHHHHhccceeeecccCCccccc
Confidence 68999999999999999999998 5899976
No 208
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=32.36 E-value=85 Score=35.22 Aligned_cols=64 Identities=16% Similarity=0.228 Sum_probs=46.4
Q ss_pred hhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcE-EEEeeeccccCC
Q 003474 321 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHASN 394 (817)
Q Consensus 321 ~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~-VIlDvV~NH~s~ 394 (817)
++.|..|+++|+|.|.|- |... +..-+-.+ .|-.+.++..+.|+.|++.|+. |-+|+.++.-..
T Consensus 100 ~e~l~~l~~~Gv~risiG-vqS~--------~~~~l~~l-gR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 164 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLG-VQSF--------RDDKLLFL-GRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQ 164 (360)
T ss_pred HHHHHHHHHcCCCEEEEe-cccC--------ChHHHHHh-CCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCC
Confidence 468999999999999753 3221 11112233 4667899999999999999995 789998875443
No 209
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=31.90 E-value=4.2e+02 Score=29.60 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHcCcEEEEeeeccccCCC
Q 003474 365 TPDDLKSLIDKAHELGLLVLMDIVHSHASNN 395 (817)
Q Consensus 365 t~edlk~LV~~aH~~GI~VIlDvV~NH~s~~ 395 (817)
-.+.||+|++++|+.|-++++-+. |.+..
T Consensus 75 ~i~~~~~l~~~vh~~g~~~~~QL~--h~G~~ 103 (353)
T cd02930 75 QAAGHRLITDAVHAEGGKIALQIL--HAGRY 103 (353)
T ss_pred HHHHHHHHHHHHHHcCCEEEeecc--CCCCC
Confidence 378999999999999999999876 55543
No 210
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=31.79 E-value=87 Score=33.31 Aligned_cols=48 Identities=17% Similarity=0.325 Sum_probs=33.9
Q ss_pred hhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEE
Q 003474 322 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVL 384 (817)
Q Consensus 322 ~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VI 384 (817)
+.|+.++++||++|+|..-.. ..| . +. .+..++++|.+.+.+.||+|.
T Consensus 17 ~~l~~~~~~G~~~vEl~~~~~-----------~~~-~--~~-~~~~~~~~l~~~~~~~gl~v~ 64 (275)
T PRK09856 17 HAFRDASELGYDGIEIWGGRP-----------HAF-A--PD-LKAGGIKQIKALAQTYQMPII 64 (275)
T ss_pred HHHHHHHHcCCCEEEEccCCc-----------ccc-c--cc-cCchHHHHHHHHHHHcCCeEE
Confidence 689999999999999843111 111 1 11 134678889999999999974
No 211
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=31.25 E-value=4.3e+02 Score=33.00 Aligned_cols=133 Identities=16% Similarity=0.198 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHc-CcEEEEeeeccccCCCccccCcCCCCCC-----CCccccCCCCCcccCCCC-CCCCCCH---HHH
Q 003474 366 PDDLKSLIDKAHEL-GLLVLMDIVHSHASNNVLDGLNMFDGTD-----GHYFHSGSRGYHWMWDSR-LFNYGSW---EVL 435 (817)
Q Consensus 366 ~edlk~LV~~aH~~-GI~VIlDvV~NH~s~~~~~~l~~fdg~~-----~~yf~~~~~g~~~~w~~~-~ln~~~p---eV~ 435 (817)
.+.+|++++++|+. |-++++-+ +|.+....... .+.+.. ..+....+......-... --..... ++.
T Consensus 474 i~~~~~~~~~vh~~gg~~i~~QL--~h~Gr~~~~~~-~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i 550 (765)
T PRK08255 474 EAAWKRIVDFVHANSDAKIGIQL--GHSGRKGSTRL-GWEGIDEPLEEGNWPLISASPLPYLPGSQVPREMTRADMDRVR 550 (765)
T ss_pred HHHHHHHHHHHHhcCCceEEEEc--cCCcccccccc-cccccccccccCCCceeCCCCCcCCCCCCCCCcCCHHHHHHHH
Confidence 57899999999999 68988886 67766431110 010000 000000000000000000 0011122 344
Q ss_pred HHHHHHHHHHHHhCCccEEEEecCCcccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCC
Q 003474 436 RFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYP 505 (817)
Q Consensus 436 ~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~~~v~~~~P 505 (817)
+.+..+++.-.+ .|+||+-+-+++..+-... +.......-++|.|.-+ ..+.|+.++.+.|++.-+
T Consensus 551 ~~f~~aA~~a~~-aGfDgveih~ahGyLl~qF-lsp~~N~RtD~yGGsle--nR~r~~~eiv~~ir~~~~ 616 (765)
T PRK08255 551 DDFVAAARRAAE-AGFDWLELHCAHGYLLSSF-ISPLTNQRTDEYGGSLE--NRLRYPLEVFRAVRAVWP 616 (765)
T ss_pred HHHHHHHHHHHH-cCCCEEEEecccchHHHHh-cCCCCCCCCCCCCCCHH--HHhHHHHHHHHHHHHhcC
Confidence 445556665544 8999999998853221100 00011111223433222 235677888888877654
No 212
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=31.21 E-value=56 Score=36.73 Aligned_cols=63 Identities=19% Similarity=0.227 Sum_probs=45.4
Q ss_pred hhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcE-EEEeeeccccC
Q 003474 321 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHAS 393 (817)
Q Consensus 321 ~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~-VIlDvV~NH~s 393 (817)
+++|.-++++|+|.|.| +|+.... .+. -.+ .|-.+.++..+.|+.|++.|+. |-+|+.++.-+
T Consensus 103 ~e~l~~lk~~G~nrisi-GvQS~~d------~vL--~~l-~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPg 166 (353)
T PRK05904 103 QSQINLLKKNKVNRISL-GVQSMNN------NIL--KQL-NRTHTIQDSKEAINLLHKNGIYNISCDFLYCLPI 166 (353)
T ss_pred HHHHHHHHHcCCCEEEE-ecccCCH------HHH--HHc-CCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCC
Confidence 47899999999999864 4443211 011 112 3446889999999999999997 88999987543
No 213
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=30.28 E-value=54 Score=32.20 Aligned_cols=52 Identities=15% Similarity=0.239 Sum_probs=38.5
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeee
Q 003474 315 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIV 388 (817)
Q Consensus 315 ~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV 388 (817)
||.-.. +-.+-|+++||..-- .|-|..=||+.+.+++++|+++|++||+=.-
T Consensus 14 D~~~mk-~Aa~~L~~fgi~ye~---------------------~VvSAHRTPe~m~~ya~~a~~~g~~viIAgA 65 (162)
T COG0041 14 DWDTMK-KAAEILEEFGVPYEV---------------------RVVSAHRTPEKMFEYAEEAEERGVKVIIAGA 65 (162)
T ss_pred hHHHHH-HHHHHHHHcCCCeEE---------------------EEEeccCCHHHHHHHHHHHHHCCCeEEEecC
Confidence 455444 567788889886431 2334556999999999999999999998643
No 214
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=30.00 E-value=45 Score=38.23 Aligned_cols=37 Identities=32% Similarity=0.443 Sum_probs=32.2
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeec
Q 003474 353 VTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVH 389 (817)
Q Consensus 353 v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~ 389 (817)
...+-.++...|+..+++++++.||++|+.|++|.+.
T Consensus 165 lvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq 201 (405)
T COG0520 165 LVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQ 201 (405)
T ss_pred EEEEECccccccccchHHHHHHHHHHcCCEEEEECcc
Confidence 4445667788999999999999999999999999873
No 215
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=29.45 E-value=61 Score=37.42 Aligned_cols=66 Identities=18% Similarity=0.281 Sum_probs=45.6
Q ss_pred HhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEE-EeeeccccCCC
Q 003474 320 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVL-MDIVHSHASNN 395 (817)
Q Consensus 320 ~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VI-lDvV~NH~s~~ 395 (817)
.++.|..++++|+|.|.| .|.... ..-...+. |--+.++..+.|+.|++.||.+| +|+.++.-..+
T Consensus 140 t~e~l~~l~~~G~~rvsl-GvQS~~--------~~~L~~l~-R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt 206 (430)
T PRK08208 140 TAEKLALLAARGVNRLSI-GVQSFH--------DSELHALH-RPQKRADVHQALEWIRAAGFPILNIDLIYGIPGQT 206 (430)
T ss_pred CHHHHHHHHHcCCCEEEE-ecccCC--------HHHHHHhC-CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 457899999999999874 333221 01111222 22378899999999999999865 99998866554
No 216
>PRK15447 putative protease; Provisional
Probab=28.95 E-value=1.1e+02 Score=33.52 Aligned_cols=52 Identities=17% Similarity=0.142 Sum_probs=37.1
Q ss_pred CCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEE
Q 003474 314 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 385 (817)
Q Consensus 314 G~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIl 385 (817)
|++..| .-.|++.|+++|||---. .+.- .+ | +.+++++.|+.||++|.+|.+
T Consensus 15 ~~~~~~----~~~~~~~gaDaVY~g~~~-~~~R-------~~-------f-~~~~l~e~v~~~~~~gkkvyv 66 (301)
T PRK15447 15 ETVRDF----YQRAADSPVDIVYLGETV-CSKR-------RE-------L-KVGDWLELAERLAAAGKEVVL 66 (301)
T ss_pred CCHHHH----HHHHHcCCCCEEEECCcc-CCCc-------cC-------C-CHHHHHHHHHHHHHcCCEEEE
Confidence 455544 456889999999986211 1110 01 2 779999999999999999988
No 217
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=28.64 E-value=5.3e+02 Score=28.03 Aligned_cols=59 Identities=10% Similarity=0.132 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHcCcEEEEeeeccccCCCccccCcCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003474 367 DDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWL 446 (817)
Q Consensus 367 edlk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~l~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~l~~~l~~Wl 446 (817)
+.+++.|+.|+++|+.|..-+...-.+. +++. .. .+++++.++-..
T Consensus 120 ~~~~~~v~~ak~~g~~v~~~i~~~~~~~--------~~~~-----------------------~~---~~~~~~~~~~~~ 165 (287)
T PRK05692 120 ERFEPVAEAAKQAGVRVRGYVSCVLGCP--------YEGE-----------------------VP---PEAVADVAERLF 165 (287)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEEecCC--------CCCC-----------------------CC---HHHHHHHHHHHH
Confidence 3577888888888888766555421111 0000 01 257888888888
Q ss_pred HhCCccEEEE-ecCC
Q 003474 447 EEYKFDGFRF-DGVT 460 (817)
Q Consensus 447 ~e~gvDGfR~-D~v~ 460 (817)
+ .|+|.+++ |.+.
T Consensus 166 ~-~G~d~i~l~DT~G 179 (287)
T PRK05692 166 A-LGCYEISLGDTIG 179 (287)
T ss_pred H-cCCcEEEeccccC
Confidence 7 89998887 4443
No 218
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=28.63 E-value=88 Score=33.52 Aligned_cols=50 Identities=16% Similarity=0.220 Sum_probs=35.6
Q ss_pred hhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEE
Q 003474 322 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVL 384 (817)
Q Consensus 322 ~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VI 384 (817)
+.|+.++++||++|+|.+ -+... +..+.+ -+++++++|.+.+-++||+|.
T Consensus 20 e~l~~~~~~G~~~VEl~~-~~~~~----~~~~~~--------~~~~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 20 ERLQLAKTCGFDFVEMSV-DETDD----RLSRLD--------WSREQRLALVNAIIETGVRIP 69 (279)
T ss_pred HHHHHHHHcCCCEEEEec-CCccc----hhhccC--------CCHHHHHHHHHHHHHcCCCce
Confidence 689999999999999942 21110 111111 257889999999999999985
No 219
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=28.38 E-value=5e+02 Score=29.34 Aligned_cols=128 Identities=19% Similarity=0.194 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHcCcEEEEeeeccccCCCccccCcC-CCCCCCC-ccccCCCCCcccCCCCCCCCCC---HHHHHHHHH
Q 003474 366 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNM-FDGTDGH-YFHSGSRGYHWMWDSRLFNYGS---WEVLRFLLS 440 (817)
Q Consensus 366 ~edlk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~l~~-fdg~~~~-yf~~~~~g~~~~w~~~~ln~~~---peV~~~l~~ 440 (817)
.+.||++++++|+.|=++++-+. |.+......... ...-.+. ...... ..-.+ =-... .+|.+.+..
T Consensus 82 i~~~~~vt~avH~~G~~i~iQL~--H~Gr~~~~~~~~~~~~vapS~~~~~~~-----~~~~p-r~mt~~eI~~ii~~f~~ 153 (363)
T COG1902 82 IPGLKRLTEAVHAHGAKIFIQLW--HAGRKARASHPWLPSAVAPSAIPAPGG-----RRATP-RELTEEEIEEVIEDFAR 153 (363)
T ss_pred hHHHHHHHHHHHhcCCeEEEEec--cCcccccccccCCCcccCCCccccccC-----CCCCC-ccCCHHHHHHHHHHHHH
Confidence 67899999999999999999865 555322100000 0000000 000000 00000 00112 234444444
Q ss_pred HHHHHHHhCCccEEEEecCCcccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCC
Q 003474 441 NARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYP 505 (817)
Q Consensus 441 ~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~~~v~~~~P 505 (817)
+++.=.+ -|+||.-+-+++..+-..+ +.......-++|.|.-+| -..|+.++-+.|++.-+
T Consensus 154 AA~rA~~-AGFDgVEIH~AhGYLi~qF-lsp~tN~RtD~YGGSlEN--R~Rf~~EVv~aVr~~vg 214 (363)
T COG1902 154 AARRAKE-AGFDGVEIHGAHGYLLSQF-LSPLTNKRTDEYGGSLEN--RARFLLEVVDAVREAVG 214 (363)
T ss_pred HHHHHHH-cCCCEEEEeeccchHHHHh-cCCccCCCCCccCCcHHH--HHHHHHHHHHHHHHHhC
Confidence 5555555 8999999999985432210 000111112344443333 34577777777766543
No 220
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=27.46 E-value=67 Score=36.19 Aligned_cols=30 Identities=33% Similarity=0.558 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHHHcCcEEEEeeeccccCC
Q 003474 365 TPDDLKSLIDKAHELGLLVLMDIVHSHASN 394 (817)
Q Consensus 365 t~edlk~LV~~aH~~GI~VIlDvV~NH~s~ 394 (817)
|.+-|+++.+.||+.||-||-|=|+.|+.-
T Consensus 217 s~~HL~kiae~A~klgi~vIaDEVY~~~vf 246 (447)
T KOG0259|consen 217 SEDHLKKIAETAKKLGIMVIADEVYGHTVF 246 (447)
T ss_pred cHHHHHHHHHHHHHhCCeEEehhhcceeec
Confidence 568899999999999999999999999954
No 221
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=27.36 E-value=89 Score=36.34 Aligned_cols=66 Identities=21% Similarity=0.308 Sum_probs=46.7
Q ss_pred HhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCc-EEEEeeeccccCCC
Q 003474 320 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGL-LVLMDIVHSHASNN 395 (817)
Q Consensus 320 ~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI-~VIlDvV~NH~s~~ 395 (817)
+++.|..|+++|++.|.|- |.... ..-.-.+ .+-.+.++..+.++.+++.|| .|-+|+.++.-+.+
T Consensus 150 t~e~l~~l~~aG~~risiG-vqS~~--------~~~L~~l-~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt 216 (453)
T PRK09249 150 DLEMLDALRELGFNRLSLG-VQDFD--------PEVQKAV-NRIQPFEFTFALVEAARELGFTSINIDLIYGLPKQT 216 (453)
T ss_pred CHHHHHHHHHcCCCEEEEC-CCCCC--------HHHHHHh-CCCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCCCC
Confidence 4579999999999998753 32211 1111122 344688999999999999999 89999988755543
No 222
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=26.76 E-value=62 Score=36.73 Aligned_cols=54 Identities=22% Similarity=0.408 Sum_probs=38.2
Q ss_pred hhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCC---CHHHHHHHHHHHHHcCcEEEEeeecccc
Q 003474 322 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCG---TPDDLKSLIDKAHELGLLVLMDIVHSHA 392 (817)
Q Consensus 322 ~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~G---t~edlk~LV~~aH~~GI~VIlDvV~NH~ 392 (817)
+.+..-+++|.+.==|+=+. | +--+| ++++|..|++=|.+++|.||.|=|+.-+
T Consensus 215 ~A~~~A~~~~~kVkGvlitN--P---------------sNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~s 271 (471)
T KOG0256|consen 215 AALNQARKLGLKVKGVLITN--P---------------SNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGS 271 (471)
T ss_pred HHHHHHHHhCCceeEEEEeC--C---------------CCCCCCccCHHHHHHHHHHHhhcceEEEeehhhccc
Confidence 56777778887653222221 1 12344 4899999999999999999999887654
No 223
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=26.56 E-value=1e+02 Score=34.52 Aligned_cols=63 Identities=19% Similarity=0.296 Sum_probs=45.6
Q ss_pred hhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcE-EEEeeeccccC
Q 003474 321 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHAS 393 (817)
Q Consensus 321 ~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~-VIlDvV~NH~s 393 (817)
+++|..++++|||.|. +.|+... ..-.-.+ .|-.+.++..+-|+.+++.|+. |-+|+.++.-+
T Consensus 98 ~e~l~~l~~~GvnRiS-iGvQS~~--------~~~L~~l-gR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPg 161 (350)
T PRK08446 98 KAWLKGMKNLGVNRIS-FGVQSFN--------EDKLKFL-GRIHSQKQIIKAIENAKKAGFENISIDLIYDTPL 161 (350)
T ss_pred HHHHHHHHHcCCCEEE-EecccCC--------HHHHHHc-CCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCC
Confidence 4799999999999997 3444322 1111222 4556789999999999999996 66999987544
No 224
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=26.34 E-value=7.4e+02 Score=27.56 Aligned_cols=28 Identities=18% Similarity=0.321 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHcCcEEEEeeeccccCCC
Q 003474 366 PDDLKSLIDKAHELGLLVLMDIVHSHASNN 395 (817)
Q Consensus 366 ~edlk~LV~~aH~~GI~VIlDvV~NH~s~~ 395 (817)
.+.||+|++++|+.|-++++-+. |.+..
T Consensus 76 i~~lr~la~~vh~~ga~~~~QL~--H~G~~ 103 (338)
T cd02933 76 VEGWKKVTDAVHAKGGKIFLQLW--HVGRV 103 (338)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcc--cCccC
Confidence 57899999999999999999765 66554
No 225
>PRK15452 putative protease; Provisional
Probab=25.89 E-value=1.3e+02 Score=34.95 Aligned_cols=49 Identities=20% Similarity=0.192 Sum_probs=32.9
Q ss_pred hhhHHHHcCCCEEEEcC-cccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEE
Q 003474 323 VLPRIKRLGYNAVQIMA-VQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 385 (817)
Q Consensus 323 ~L~ylk~LGv~~I~LmP-i~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIl 385 (817)
.|...-+.|.++|++-. -+. +.-...+| +.++|++.|+.||++|++|.+
T Consensus 15 ~l~aAi~~GADaVY~G~~~~~------~R~~~~~f--------~~edl~eav~~ah~~g~kvyv 64 (443)
T PRK15452 15 NMRYAFAYGADAVYAGQPRYS------LRVRNNEF--------NHENLALGINEAHALGKKFYV 64 (443)
T ss_pred HHHHHHHCCCCEEEECCCccc------hhhhccCC--------CHHHHHHHHHHHHHcCCEEEE
Confidence 44455678999999732 111 11111222 568999999999999999976
No 226
>PLN02389 biotin synthase
Probab=25.82 E-value=1.4e+02 Score=33.92 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=44.0
Q ss_pred hhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeeccc
Q 003474 321 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 391 (817)
Q Consensus 321 ~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH 391 (817)
.+.+..||+.|++.+.+ .+|.. ..-|-.+.+. .+.++-.+.++.||+.||+|..=+++.|
T Consensus 178 ~E~l~~LkeAGld~~~~--~LeTs--------~~~y~~i~~~-~s~e~rl~ti~~a~~~Gi~v~sg~IiGl 237 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNH--NLDTS--------REYYPNVITT-RSYDDRLETLEAVREAGISVCSGGIIGL 237 (379)
T ss_pred HHHHHHHHHcCCCEEEe--eecCC--------hHHhCCcCCC-CCHHHHHHHHHHHHHcCCeEeEEEEECC
Confidence 46899999999999866 23321 1122233322 2889999999999999999988888877
No 227
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=25.70 E-value=43 Score=33.48 Aligned_cols=45 Identities=16% Similarity=0.253 Sum_probs=34.8
Q ss_pred hhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEE
Q 003474 324 LPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 385 (817)
Q Consensus 324 L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIl 385 (817)
|..++++|++.|+|.+....... .. .++++++.+.+.+.||.|+.
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~--------~~---------~~~~~~~~~~~~~~gl~i~~ 45 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWD--------EK---------DDEAEELRRLLEDYGLKIAS 45 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHT--------HH---------HHHHHHHHHHHHHTTCEEEE
T ss_pred ChHHHHcCCCEEEEecCCCcccc--------cc---------hHHHHHHHHHHHHcCCeEEE
Confidence 45689999999999887644321 10 78899999999999999654
No 228
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=25.61 E-value=94 Score=36.15 Aligned_cols=65 Identities=14% Similarity=0.213 Sum_probs=46.2
Q ss_pred HhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcE-EEEeeeccccCC
Q 003474 320 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHASN 394 (817)
Q Consensus 320 ~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~-VIlDvV~NH~s~ 394 (817)
.++.|..|+++|+|.|.|-. ... +..-.-.+ .+-.+.++..+.|+.|++.|+. |-+|+.++.-+.
T Consensus 151 t~e~l~~L~~~G~~rvsiGv-QS~--------~~~vl~~l-~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgq 216 (453)
T PRK13347 151 TAEMLQALAALGFNRASFGV-QDF--------DPQVQKAI-NRIQPEEMVARAVELLRAAGFESINFDLIYGLPHQ 216 (453)
T ss_pred CHHHHHHHHHcCCCEEEECC-CCC--------CHHHHHHh-CCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCC
Confidence 34799999999999997532 211 11111122 3457889999999999999997 889998875443
No 229
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=25.51 E-value=90 Score=35.23 Aligned_cols=64 Identities=19% Similarity=0.255 Sum_probs=45.0
Q ss_pred hhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcE-EEEeeeccccCC
Q 003474 321 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHASN 394 (817)
Q Consensus 321 ~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~-VIlDvV~NH~s~ 394 (817)
++.|..++++|+|.|.|- |.... ..-+-.+ .+-.+.++..+.|+.+++.|+. |-+|+.++.-+.
T Consensus 100 ~e~l~~l~~~G~~rvsiG-vqS~~--------~~~l~~l-~r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgq 164 (377)
T PRK08599 100 KEKLQVLKDSGVNRISLG-VQTFN--------DELLKKI-GRTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQ 164 (377)
T ss_pred HHHHHHHHHcCCCEEEEe-cccCC--------HHHHHHc-CCCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCC
Confidence 478999999999998753 33211 1111122 3456789999999999999997 668998775543
No 230
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=25.30 E-value=64 Score=30.44 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=24.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCcEEEEe
Q 003474 361 SRCGTPDDLKSLIDKAHELGLLVLMD 386 (817)
Q Consensus 361 ~~~Gt~edlk~LV~~aH~~GI~VIlD 386 (817)
-++-+..|+|.+-+...++||+|++|
T Consensus 16 ~ri~s~~d~k~~kk~m~~~gIkV~Id 41 (132)
T PF15640_consen 16 QRIMSVKDIKNFKKEMGKRGIKVKID 41 (132)
T ss_pred cEeeeHHHHHHHHHHHHhCCcEEEEC
Confidence 56778899999999999999999999
No 231
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=24.63 E-value=1.8e+02 Score=31.07 Aligned_cols=56 Identities=13% Similarity=0.056 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhCCccEEEEecCCcccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCEEEEEe
Q 003474 434 VLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGE 512 (817)
Q Consensus 434 V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~~~~a~~fl~~~~~~v~~~~P~~~~IgE 512 (817)
.++-+++++.-++++||+||+-+|-=.. ......-..+++++++.+++.. .++++-
T Consensus 97 ~~~~fv~S~~~~l~~~~fDGiDiDwE~~---------------------~~d~~~f~~ll~~l~~~l~~~~--~lt~a~ 152 (253)
T cd06544 97 WVSNAVSSLTSIIQTYNLDGIDIDYEHF---------------------PADPDTFVECIGQLITELKNNG--VIKVAS 152 (253)
T ss_pred HHHHHHHHHHHHHHHhCCCceeeecccC---------------------CcCHHHHHHHHHHHHHHhhhcC--CeEEEE
Confidence 3445577788889999999999884210 0011122467888888887643 555554
No 232
>PF12820 BRCT_assoc: Serine-rich domain associated with BRCT
Probab=24.62 E-value=47 Score=32.91 Aligned_cols=45 Identities=24% Similarity=0.332 Sum_probs=35.1
Q ss_pred CCCCCceeeCCCCCCCCCCc----cccccCCcccccccccccccccccc
Q 003474 42 FSPSEKVLVPGSQSDDPSAV----TDQLETPETVSEDIEVRNGIESLQM 86 (817)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (817)
||.|+.+|-.++-.|..+.+ ...||+|+.+++.+..++.+|..+-
T Consensus 43 fSRSde~ltSd~s~d~~sesnae~a~ale~p~~~dg~S~sSeK~dl~as 91 (165)
T PF12820_consen 43 FSRSDEMLTSDDSCDRRSESNAEVAGALEVPNEVDGYSGSSEKIDLMAS 91 (165)
T ss_pred HhccCCccccCCCCCCcccccccccccccCCcccccCccccccccccCC
Confidence 66999999998877764333 6889999999999888876665543
No 233
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=24.47 E-value=1e+02 Score=34.73 Aligned_cols=65 Identities=18% Similarity=0.233 Sum_probs=45.5
Q ss_pred HhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcE-EEEeeeccccCC
Q 003474 320 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHASN 394 (817)
Q Consensus 320 ~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~-VIlDvV~NH~s~ 394 (817)
.++.|..++++|+|.|.|- |.... ..-.-.+ .|-.+.++..+-|+.+++.|+. |-+|+.++.-+.
T Consensus 98 t~e~l~~l~~~G~~rvsiG-vqS~~--------d~~L~~l-~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgq 163 (374)
T PRK05799 98 TEEKLKILKSMGVNRLSIG-LQAWQ--------NSLLKYL-GRIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQ 163 (374)
T ss_pred CHHHHHHHHHcCCCEEEEE-CccCC--------HHHHHHc-CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCC
Confidence 3578999999999998753 33211 1111122 3455789999999999999997 779998875443
No 234
>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase. The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.
Probab=24.42 E-value=1.5e+02 Score=28.01 Aligned_cols=55 Identities=20% Similarity=0.403 Sum_probs=31.2
Q ss_pred EEEEEec----CCcCEEEEEeecCCCCCc----ccccccC-CCceEEEEe--CCCCCCCCCCCCCCEEEEEEeCC
Q 003474 185 ITYREWA----PGAKSASLIGDFNNWNPN----ADIMTQN-EFGVWEIFL--PNNADGSPPIPHGSRVKIHMDTP 248 (817)
Q Consensus 185 v~fr~WA----P~A~~V~LvgdFN~W~~~----~~pm~r~-~~GvWei~l--p~~~~g~~~~~~g~~yk~~~~~~ 248 (817)
||| +|- .....+.|.++.|+.... ...|+|. +.+||..++ |.+.-| .|.|....+
T Consensus 4 VTF-lWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl~gTDVW~~t~~lp~d~rg--------SY~~~p~~~ 69 (122)
T PF11806_consen 4 VTF-LWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRLPGTDVWYWTYRLPADWRG--------SYSFIPDVP 69 (122)
T ss_dssp EEE-EEE-TSTTT----EEEEEETTTTCGGGT---BEEE-TTSSEEEEEEEEETT-EE--------EEEEEEES-
T ss_pred EEE-EEeCCCCCCCceeEEEEECCcccccccCChhhheeCCCCceEEEEEEECcccEE--------EEEEEecCc
Confidence 677 776 345678888889988433 4578886 568987765 444433 377776554
No 235
>PRK05939 hypothetical protein; Provisional
Probab=24.02 E-value=87 Score=35.73 Aligned_cols=29 Identities=24% Similarity=0.225 Sum_probs=25.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCcEEEEeeec
Q 003474 361 SRCGTPDDLKSLIDKAHELGLLVLMDIVH 389 (817)
Q Consensus 361 ~~~Gt~edlk~LV~~aH~~GI~VIlDvV~ 389 (817)
...|...+++++++.||++|+.||+|-.+
T Consensus 142 NptG~v~dl~~I~~la~~~gi~livD~t~ 170 (397)
T PRK05939 142 NPGTQVADLAGIGALCRERGLLYVVDNTM 170 (397)
T ss_pred CCCCCHHhHHHHHHHHHHcCCEEEEECCc
Confidence 34678899999999999999999999764
No 236
>PRK09936 hypothetical protein; Provisional
Probab=23.78 E-value=1.3e+02 Score=32.75 Aligned_cols=51 Identities=14% Similarity=0.362 Sum_probs=37.7
Q ss_pred hhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHH-HHHHHHHHHHHcCcEEEEeee
Q 003474 322 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPD-DLKSLIDKAHELGLLVLMDIV 388 (817)
Q Consensus 322 ~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~e-dlk~LV~~aH~~GI~VIlDvV 388 (817)
+.+.-++.+|+++|.+ ....|+ ++.||+.+ -|.+++++|++.||+|++=+-
T Consensus 42 ~~~~~~~~~G~~tLiv----QWt~yG------------~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~ 93 (296)
T PRK09936 42 GLWSQLRLQGFDTLVV----QWTRYG------------DADFGGQRGWLAKRLAAAQQAGLKLVVGLY 93 (296)
T ss_pred HHHHHHHHcCCcEEEE----Eeeecc------------CCCcccchHHHHHHHHHHHHcCCEEEEccc
Confidence 5677899999999952 222211 23777754 688999999999999998654
No 237
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=23.57 E-value=1.7e+02 Score=26.99 Aligned_cols=62 Identities=13% Similarity=0.116 Sum_probs=39.7
Q ss_pred hhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEE
Q 003474 323 VLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 385 (817)
Q Consensus 323 ~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIl 385 (817)
....+..+|++++.+.+...... ..--....|..-+=+.=|...+..++++.||++|++||.
T Consensus 18 ~~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~ 79 (128)
T cd05014 18 IAATLSSTGTPAFFLHPTEALHG-DLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred HHHHhhcCCCceEEcccchhhcc-ccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEE
Confidence 44556778999987755321111 011122333333346668889999999999999999886
No 238
>PRK05660 HemN family oxidoreductase; Provisional
Probab=23.39 E-value=1.4e+02 Score=33.69 Aligned_cols=65 Identities=25% Similarity=0.311 Sum_probs=46.4
Q ss_pred hhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEE-EEeeeccccCCC
Q 003474 321 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLV-LMDIVHSHASNN 395 (817)
Q Consensus 321 ~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~V-IlDvV~NH~s~~ 395 (817)
.++|..|+++|+|.|.|-. ... +..-+-.+ .+..+.++..+-++.|++.|+.. -+|+.++.-..+
T Consensus 107 ~e~l~~Lk~~Gv~risiGv-qS~--------~~~~L~~l-~r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt 172 (378)
T PRK05660 107 ADRFVGYQRAGVNRISIGV-QSF--------SEEKLKRL-GRIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQS 172 (378)
T ss_pred HHHHHHHHHcCCCEEEecc-CcC--------CHHHHHHh-CCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 3689999999999997532 211 11222233 35578999999999999999976 499998766544
No 239
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=23.06 E-value=1.1e+02 Score=35.58 Aligned_cols=65 Identities=20% Similarity=0.323 Sum_probs=44.9
Q ss_pred HhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcE-EEEeeeccccCC
Q 003474 320 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHASN 394 (817)
Q Consensus 320 ~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~-VIlDvV~NH~s~ 394 (817)
.++.|..|+++|++.|.|- |.... ..-.-.+ .+-.+.++..+-|+.+++.|+. |-+|+.++.-+.
T Consensus 150 ~~e~l~~lk~~G~~risiG-vqS~~--------~~~l~~l-~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 215 (455)
T TIGR00538 150 TKDVIDALRDEGFNRLSFG-VQDFN--------KEVQQAV-NRIQPEEMIFELMNHAREAGFTSINIDLIYGLPKQ 215 (455)
T ss_pred CHHHHHHHHHcCCCEEEEc-CCCCC--------HHHHHHh-CCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCC
Confidence 3578999999999999753 22111 1111122 2346789999999999999996 779998775443
No 240
>PF09154 DUF1939: Domain of unknown function (DUF1939); InterPro: IPR015237 This entry represents a C-terminal domain associated with prokaryotic alpha-amylases. It adopts a secondary structure consisting of an eight-stranded antiparallel beta-sheet containing a Greek key motif. Its exact function has not, as yet, been determined []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1MXD_A 1MWO_A 1MXG_A 1W9X_A 2DIE_A 1VJS_A 1BPL_B 1BLI_A 1OB0_A 1E3Z_A ....
Probab=22.96 E-value=2.5e+02 Score=22.89 Aligned_cols=56 Identities=20% Similarity=0.134 Sum_probs=32.0
Q ss_pred EEEEEEcCCCCcccceEEcccCCCc-eEEEEcCCCCCcCCccccCCCcceeccccccCCCCeEEEEEEcCceEEEEE
Q 003474 731 LVFVFNFHWNSSYSDYRVGCLKPGK-YKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYA 806 (817)
Q Consensus 731 llvV~Nf~~~~~~~~~~i~v~~~g~-~~~vl~sd~~~~gG~~~~~~~~~~~~~~~~~~~~~~~i~l~lpp~s~~Vl~ 806 (817)
|+|++|.++ ......|+...+|+ |.+.+ |+.. ...+ -+..+...+.+||++..|+.
T Consensus 1 L~v~iN~~~--~~k~~~Vgt~~ag~~~~D~t--------Gn~~-----~~vt-----id~dG~~~f~v~~~s~SVWs 57 (57)
T PF09154_consen 1 LAVYINGSA--GWKRMWVGTNWAGKTFYDYT--------GNSS-----ETVT-----IDEDGWGEFPVPPGSVSVWS 57 (57)
T ss_dssp EEEEEE-SS--SEEEEEEEGGGTTEEEEETT--------SSSS-----SEEE-----E-TTSEEEEEE-TTEEEEEE
T ss_pred CEEEEeCCC--CeEEEEEccccCCCEEEEcc--------CCCC-----CeEE-----ECCCeEEEEEECCCEEEEeC
Confidence 567778884 45667787666664 55443 2211 1111 13345688999999999874
No 241
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=22.92 E-value=71 Score=36.05 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCcEEEEeeecc
Q 003474 361 SRCGTPDDLKSLIDKAHELGLLVLMDIVHS 390 (817)
Q Consensus 361 ~~~Gt~edlk~LV~~aH~~GI~VIlDvV~N 390 (817)
+..|+..+++++++.||++|+.||+|-++.
T Consensus 169 ~~tG~~~~l~~I~~la~~~g~~livD~a~~ 198 (387)
T PRK09331 169 GNYGNLADAKKVAKVAHEYGIPFLLNGAYT 198 (387)
T ss_pred CCCcccccHHHHHHHHHHcCCEEEEECCcc
Confidence 457888999999999999999999998754
No 242
>PRK12928 lipoyl synthase; Provisional
Probab=22.71 E-value=2e+02 Score=31.44 Aligned_cols=61 Identities=21% Similarity=0.277 Sum_probs=45.9
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEe
Q 003474 315 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMD 386 (817)
Q Consensus 315 ~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlD 386 (817)
|...+. +.|..|+++|++.|.+.+... |. -..-+=.+|=+|++|+.+-+.|.+.|.+-+.-
T Consensus 217 T~ed~~-etl~~Lrel~~d~v~i~~Yl~-p~---------~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~~ 277 (290)
T PRK12928 217 TEDEVI-ETLRDLRAVGCDRLTIGQYLR-PS---------LAHLPVQRYWTPEEFEALGQIARELGFSHVRS 277 (290)
T ss_pred CHHHHH-HHHHHHHhcCCCEEEEEcCCC-CC---------ccCCceeeccCHHHHHHHHHHHHHcCCceeEe
Confidence 667777 699999999999998777543 22 11122357889999999999999999876543
No 243
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=22.69 E-value=84 Score=35.92 Aligned_cols=66 Identities=20% Similarity=0.265 Sum_probs=46.8
Q ss_pred HhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcE-EEEeeeccccCCC
Q 003474 320 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHASNN 395 (817)
Q Consensus 320 ~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~-VIlDvV~NH~s~~ 395 (817)
.+++|..++++|+|.|.| .|+... ..-.-.+ .|--+.++..+-++.+++.|+. |-+|+.++.-+.+
T Consensus 114 t~e~l~~l~~~Gvnrisl-GvQS~~--------d~~L~~l-~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt 180 (400)
T PRK07379 114 DLEQLQGYRSLGVNRVSL-GVQAFQ--------DELLALC-GRSHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQT 180 (400)
T ss_pred CHHHHHHHHHCCCCEEEE-EcccCC--------HHHHHHh-CCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 347899999999999974 333221 1111122 3445889999999999999998 7899998866544
No 244
>PRK05967 cystathionine beta-lyase; Provisional
Probab=22.68 E-value=97 Score=35.42 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHHHHHcCcEEEEeeecc
Q 003474 362 RCGTPDDLKSLIDKAHELGLLVLMDIVHS 390 (817)
Q Consensus 362 ~~Gt~edlk~LV~~aH~~GI~VIlDvV~N 390 (817)
-.++..+++++++.||++|+-||+|-++.
T Consensus 161 P~l~v~dl~~I~~la~~~g~~vvVD~t~a 189 (395)
T PRK05967 161 NTFEMQDIPAIAEAAHRHGAIVMMDNTWA 189 (395)
T ss_pred CCCcHHHHHHHHHHHHHhCCEEEEECCcc
Confidence 36899999999999999999999997764
No 245
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=22.68 E-value=96 Score=33.56 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=36.7
Q ss_pred hhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeecccc
Q 003474 324 LPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHA 392 (817)
Q Consensus 324 L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~ 392 (817)
+..+..-.+..|.+.+. .++. |+ .=+.+++++|++.||+.|+.||+|-++...
T Consensus 125 ~~~~~~~~~~~v~i~~~-~~~t----G~-----------~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~ 177 (350)
T cd00609 125 LEAAKTPKTKLLYLNNP-NNPT----GA-----------VLSEEELEELAELAKKHGILIISDEAYAEL 177 (350)
T ss_pred HHhhcCccceEEEEECC-CCCC----Cc-----------ccCHHHHHHHHHHHHhCCeEEEEecchhhc
Confidence 33344556778877662 2221 21 125689999999999999999999987543
No 246
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=22.62 E-value=8.5e+02 Score=29.98 Aligned_cols=127 Identities=13% Similarity=0.024 Sum_probs=73.0
Q ss_pred hhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHH-HHHHHHHH-HcCcEEEEeeeccccCCCccc
Q 003474 321 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDL-KSLIDKAH-ELGLLVLMDIVHSHASNNVLD 398 (817)
Q Consensus 321 ~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edl-k~LV~~aH-~~GI~VIlDvV~NH~s~~~~~ 398 (817)
+..|++|+++|+|+|+|-.+.+..+++. +.-.|=++.++=-.+|| -+..=.++ +.|++|..-+-.--+.-..
T Consensus 337 ~~l~~ri~~~~~~~VyLqafadp~gdg~----~~~lYFpnr~lPmraDlfnrvawql~tR~~v~vyAWmpvl~~~l~~-- 410 (672)
T PRK14581 337 DKLVQRISDLRVTHVFLQAFSDPKGDGN----IRQVYFPNRWIPMRQDLFNRVVWQLASRPDVEVYAWMPVLAFDMDP-- 410 (672)
T ss_pred HHHHHHHHhcCCCEEEEEeeeCCCCCCc----eeeEEecCCcccHHHhhhhHHHHHHHhhhCceEEEeeehhhccCCc--
Confidence 3689999999999999999987655432 12223344444444444 44434555 5599998776543221100
Q ss_pred cCcCCCCCCCCccccCCC-CCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEec
Q 003474 399 GLNMFDGTDGHYFHSGSR-GYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDG 458 (817)
Q Consensus 399 ~l~~fdg~~~~yf~~~~~-g~~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~ 458 (817)
. .. ....+..... .....-+-+-|.--+|++|+.|.++..-....-.|||+=|.-
T Consensus 411 ~---~~--~~~~~~~~~~~~~~~~~~y~rlspf~~~~~~~i~~iy~DLa~~~~~~GilfhD 466 (672)
T PRK14581 411 S---LP--RITRIDPKTGKTSIDPDQYRRLSPFNPEVRQRIIDIYRDMAYSAPIDGIIYHD 466 (672)
T ss_pred c---cc--hhhhcccccCccccCCCCccccCCCCHHHHHHHHHHHHHHHhcCCCCeEEecc
Confidence 0 00 0001100000 000000123466678999999999999999944899987754
No 247
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=22.57 E-value=1.6e+02 Score=34.92 Aligned_cols=75 Identities=13% Similarity=0.146 Sum_probs=54.6
Q ss_pred CCceEEEeecCCCCCCCCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCC--CCCCCCCccccccCCCCCCCCHHHHHHH
Q 003474 295 KSLRIYEAHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHS--YYASFGYHVTNFFAPSSRCGTPDDLKSL 372 (817)
Q Consensus 295 ~~~~IYE~hv~~~~~~~~~G~~~~~~~~~L~ylk~LGv~~I~LmPi~e~~--~~~s~GY~v~dy~avd~~~Gt~edlk~L 372 (817)
..+-+|.++.. ..-++|+|..++...++-+..-|.+.++|+|+.... ...+--|.+.+=+++++.|=+++.+-++
T Consensus 16 ~~v~L~~~~~~---~~~GIGDfgdla~~~~d~~~~~g~~~~qi~Plh~~~~~~~~~SPYs~~S~~a~N~~~Id~~~l~e~ 92 (520)
T COG1640 16 SGVQLYSLRLP---GSWGIGDFGDLAYLFVDFLARHGQDYWQILPLHATGPAYEEDSPYSPSSRRALNPLYIDVEALPEF 92 (520)
T ss_pred ceeEEeeeccC---CCCCccchhhHHHHHHHHHHHccCCeEEeccCCcccccccCCCCCCchhhhccCceeecHHHhhhh
Confidence 44556665433 335789998888656777779999999999998643 1224578888888888888887777766
No 248
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=22.32 E-value=1.4e+02 Score=29.53 Aligned_cols=52 Identities=19% Similarity=0.269 Sum_probs=35.6
Q ss_pred hhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeec
Q 003474 323 VLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVH 389 (817)
Q Consensus 323 ~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~ 389 (817)
..-=|+.||..+..+. .++..++...-..+.+.++++.|++.|+.|++|.+.
T Consensus 42 ~a~~l~~LG~~~~~~~---------------~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~ 93 (196)
T cd00287 42 VAVALARLGVSVTLVG---------------ADAVVISGLSPAPEAVLDALEEARRRGVPVVLDPGP 93 (196)
T ss_pred HHHHHHHCCCcEEEEE---------------ccEEEEecccCcHHHHHHHHHHHHHcCCeEEEeCCc
Confidence 3444788999877655 222333222111478999999999999999999864
No 249
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=22.18 E-value=1.4e+02 Score=31.15 Aligned_cols=42 Identities=10% Similarity=0.275 Sum_probs=30.1
Q ss_pred hhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcE
Q 003474 321 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL 382 (817)
Q Consensus 321 ~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~ 382 (817)
+.-+..||+||.+.|=.+|+-- +-..+||+.+.++|-++|+.
T Consensus 138 etAiaml~dmG~~SiKffPM~G--------------------l~~leE~~avA~aca~~g~~ 179 (236)
T TIGR03581 138 ETAIAMLKDMGGSSVKFFPMGG--------------------LKHLEEYAAVAKACAKHGFY 179 (236)
T ss_pred HHHHHHHHHcCCCeeeEeecCC--------------------cccHHHHHHHHHHHHHcCCc
Confidence 3578999999999999988741 11356677777777666653
No 250
>PRK04302 triosephosphate isomerase; Provisional
Probab=22.16 E-value=1.5e+02 Score=30.73 Aligned_cols=44 Identities=20% Similarity=0.301 Sum_probs=32.6
Q ss_pred hhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEe
Q 003474 323 VLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMD 386 (817)
Q Consensus 323 ~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlD 386 (817)
-+..++++|++.|- .|--|.. -..++.+++++.|++.||.+|++
T Consensus 77 ~~~~l~~~G~~~vi-i~~ser~-------------------~~~~e~~~~v~~a~~~Gl~~I~~ 120 (223)
T PRK04302 77 LPEAVKDAGAVGTL-INHSERR-------------------LTLADIEAVVERAKKLGLESVVC 120 (223)
T ss_pred HHHHHHHcCCCEEE-Eeccccc-------------------cCHHHHHHHHHHHHHCCCeEEEE
Confidence 37889999999993 3322211 12456899999999999999974
No 251
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=21.35 E-value=97 Score=33.15 Aligned_cols=22 Identities=45% Similarity=0.912 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHcCcEEEEee
Q 003474 366 PDDLKSLIDKAHELGLLVLMDI 387 (817)
Q Consensus 366 ~edlk~LV~~aH~~GI~VIlDv 387 (817)
.+++++|++.||+.||.|+..+
T Consensus 142 ~~~l~el~~~A~~LGm~~LVEV 163 (254)
T COG0134 142 DEQLEELVDRAHELGMEVLVEV 163 (254)
T ss_pred HHHHHHHHHHHHHcCCeeEEEE
Confidence 4779999999999999999984
No 252
>PRK09028 cystathionine beta-lyase; Provisional
Probab=21.15 E-value=1.1e+02 Score=35.05 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHHHHHcCcEEEEeeecc
Q 003474 363 CGTPDDLKSLIDKAHELGLLVLMDIVHS 390 (817)
Q Consensus 363 ~Gt~edlk~LV~~aH~~GI~VIlDvV~N 390 (817)
.|...+++++++.||++|+.||+|-++.
T Consensus 159 tg~v~dl~~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 159 TMEVQDVPTLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred CCcHHHHHHHHHHHHHcCCEEEEECCcc
Confidence 4788999999999999999999997753
No 253
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=20.82 E-value=1.1e+02 Score=34.67 Aligned_cols=29 Identities=14% Similarity=0.273 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHHHHHHcCcEEEEeeecc
Q 003474 362 RCGTPDDLKSLIDKAHELGLLVLMDIVHS 390 (817)
Q Consensus 362 ~~Gt~edlk~LV~~aH~~GI~VIlDvV~N 390 (817)
..|...+++++++.||++|+.||+|-++.
T Consensus 147 p~g~~~dl~~I~~la~~~g~~livD~t~a 175 (377)
T TIGR01324 147 ITFEIQDIPAIAKAARNPGIVIMIDNTWA 175 (377)
T ss_pred CCCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence 35889999999999999999999997754
No 254
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=20.80 E-value=1.8e+02 Score=33.90 Aligned_cols=60 Identities=13% Similarity=0.115 Sum_probs=42.2
Q ss_pred hhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeecc
Q 003474 321 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 390 (817)
Q Consensus 321 ~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~N 390 (817)
++.|..++++|++.|.+ .+. +.. ....-.+... -+.++..+.++.||+.||.|..++++.
T Consensus 287 ~e~l~~l~~aG~~~v~i-GiE-S~s-------~~~L~~~~K~-~~~~~~~~~i~~~~~~Gi~v~~~~IiG 346 (472)
T TIGR03471 287 YETLKVMKENGLRLLLV-GYE-SGD-------QQILKNIKKG-LTVEIARRFTRDCHKLGIKVHGTFILG 346 (472)
T ss_pred HHHHHHHHHcCCCEEEE-cCC-CCC-------HHHHHHhcCC-CCHHHHHHHHHHHHHCCCeEEEEEEEe
Confidence 46889999999999873 332 211 1111122222 267899999999999999999999875
No 255
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=20.63 E-value=1.1e+02 Score=36.38 Aligned_cols=61 Identities=21% Similarity=0.264 Sum_probs=44.0
Q ss_pred HhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeecc
Q 003474 320 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 390 (817)
Q Consensus 320 ~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~N 390 (817)
.+++|..|+++|+|.|+|-. +.... .+. -.+ .|--|.++..+-++.+++.|++|.+|+.++
T Consensus 205 ~~e~L~~L~~~G~~rVslGV-QS~~d------~VL--~~i-nRght~~~v~~Ai~~lr~~G~~v~~~LM~G 265 (522)
T TIGR01211 205 REEHIDRMLKLGATRVELGV-QTIYN------DIL--ERT-KRGHTVRDVVEATRLLRDAGLKVVYHIMPG 265 (522)
T ss_pred CHHHHHHHHHcCCCEEEEEC-ccCCH------HHH--HHh-CCCCCHHHHHHHHHHHHHcCCeEEEEeecC
Confidence 35799999999999998642 22110 111 122 344478999999999999999999999876
No 256
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=20.63 E-value=63 Score=34.96 Aligned_cols=27 Identities=37% Similarity=0.623 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHHcCcEEEEeeec
Q 003474 363 CGTPDDLKSLIDKAHELGLLVLMDIVH 389 (817)
Q Consensus 363 ~Gt~edlk~LV~~aH~~GI~VIlDvV~ 389 (817)
+|...+++++++.||++|+.||+|-++
T Consensus 166 ~G~~~dl~~I~~~~~~~g~~livDeA~ 192 (294)
T cd00615 166 YGICYNLRKIVEEAHHRGLPVLVDEAH 192 (294)
T ss_pred CCEecCHHHHHHHHHhcCCeEEEECcc
Confidence 466678999999999999999999874
No 257
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=20.43 E-value=1.3e+02 Score=34.97 Aligned_cols=66 Identities=12% Similarity=0.130 Sum_probs=46.4
Q ss_pred HhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcC-cEEEEeeeccccCCC
Q 003474 320 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELG-LLVLMDIVHSHASNN 395 (817)
Q Consensus 320 ~~~~L~ylk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~G-I~VIlDvV~NH~s~~ 395 (817)
.+++|..++++|||.|. +.|+.... .-.-.+ .|--+.++..+-|+.+++.| +.|.+|++++.-+..
T Consensus 162 t~e~l~~l~~aGvnRiS-iGVQSf~d--------~vLk~l-gR~~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPgqT 228 (449)
T PRK09058 162 DDEKADAALDAGANRFS-IGVQSFNT--------QVRRRA-GRKDDREEVLARLEELVARDRAAVVCDLIFGLPGQT 228 (449)
T ss_pred CHHHHHHHHHcCCCEEE-ecCCcCCH--------HHHHHh-CCCCCHHHHHHHHHHHHhCCCCcEEEEEEeeCCCCC
Confidence 34799999999999995 34443211 001111 24447899999999999999 899999998765543
No 258
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=20.39 E-value=1.3e+02 Score=23.94 Aligned_cols=33 Identities=24% Similarity=0.449 Sum_probs=21.8
Q ss_pred cccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCCc
Q 003474 213 MTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGI 251 (817)
Q Consensus 213 m~r~~~GvWei~lp~~~~g~~~~~~g~~yk~~~~~~~g~ 251 (817)
+..+.+|.|++.+|...+|.+ .|.+......|.
T Consensus 6 ~t~~~~G~Ws~t~~~~~dG~y------~itv~a~D~AGN 38 (54)
T PF13754_consen 6 TTVDSDGNWSFTVPALADGTY------TITVTATDAAGN 38 (54)
T ss_pred EEECCCCcEEEeCCCCCCccE------EEEEEEEeCCCC
Confidence 445678999999998777753 344554444443
No 259
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=20.07 E-value=75 Score=35.32 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHHHHHHHcCcEEEEeeecc
Q 003474 362 RCGTPDDLKSLIDKAHELGLLVLMDIVHS 390 (817)
Q Consensus 362 ~~Gt~edlk~LV~~aH~~GI~VIlDvV~N 390 (817)
..|+..+++++++.||++|+.||+|-++.
T Consensus 151 ~tG~~~~~~~i~~~~~~~~~~vivD~a~~ 179 (361)
T cd06452 151 NYGNLHDAKKIAKVCHEYGVPLLLNGAYT 179 (361)
T ss_pred CCeeeccHHHHHHHHHHcCCeEEEECCcc
Confidence 45777889999999999999999998764
No 260
>PLN02808 alpha-galactosidase
Probab=20.06 E-value=1.1e+02 Score=34.84 Aligned_cols=94 Identities=21% Similarity=0.222 Sum_probs=54.2
Q ss_pred HHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCcEEEEeeeccccCCCccccCcCCCCC
Q 003474 327 IKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGT 406 (817)
Q Consensus 327 lk~LGv~~I~LmPi~e~~~~~s~GY~v~dy~avd~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~l~~fdg~ 406 (817)
|+++||+.|.|=--+......+.|..+.| ..+| |..||.|++.+|++|++.=+=... |+
T Consensus 63 l~~~Gy~yv~iDd~W~~~~rd~~G~~~~d----~~rF--P~G~~~lad~iH~~GlkfGiy~~~---------------G~ 121 (386)
T PLN02808 63 LAALGYKYINLDDCWAELKRDSQGNLVPK----ASTF--PSGIKALADYVHSKGLKLGIYSDA---------------GT 121 (386)
T ss_pred hHHhCCEEEEEcCCcCCCCcCCCCCEeeC----hhhc--CccHHHHHHHHHHCCCceEEEecC---------------Cc
Confidence 79999999987444432211122322222 0133 357999999999999986442110 11
Q ss_pred CCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCC
Q 003474 407 DGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 460 (817)
Q Consensus 407 ~~~yf~~~~~g~~~~w~~~~ln~~~peV~~~l~~~l~~Wl~e~gvDGfR~D~v~ 460 (817)
..|- + ..|..+.+...-++.+.+ .|||=+.+|...
T Consensus 122 ~tC~------~------------~~pGs~~~e~~DA~~fA~-WGvDylK~D~C~ 156 (386)
T PLN02808 122 LTCS------K------------TMPGSLGHEEQDAKTFAS-WGIDYLKYDNCE 156 (386)
T ss_pred cccC------C------------CCCcchHHHHHHHHHHHH-hCCCEEeecCcC
Confidence 1110 0 112234555556677776 999999999863
Done!