Query 003476
Match_columns 816
No_of_seqs 716 out of 4076
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 00:09:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003476.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003476hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0465 HflB ATP-dependent Zn 100.0 1E-106 2E-111 925.4 48.8 568 181-787 23-594 (596)
2 KOG0734 AAA+-type ATPase conta 100.0 7E-105 2E-109 875.1 43.5 439 324-784 296-735 (752)
3 KOG0731 AAA+-type ATPase conta 100.0 1.1E-98 2E-103 871.2 55.7 451 324-788 303-753 (774)
4 CHL00176 ftsH cell division pr 100.0 7.7E-92 1.7E-96 822.1 56.6 573 178-784 47-626 (638)
5 PRK10733 hflB ATP-dependent me 100.0 7.1E-88 1.5E-92 794.4 62.2 564 181-784 30-596 (644)
6 TIGR01241 FtsH_fam ATP-depende 100.0 4.8E-80 1E-84 709.9 49.1 449 322-782 45-495 (495)
7 COG1222 RPT1 ATP-dependent 26S 100.0 1.1E-57 2.3E-62 487.6 26.6 254 323-579 142-396 (406)
8 CHL00206 ycf2 Ycf2; Provisiona 100.0 2E-56 4.2E-61 546.5 26.6 319 355-705 1620-1995(2281)
9 KOG0730 AAA+-type ATPase [Post 100.0 1.8E-53 3.8E-58 482.3 28.5 324 243-578 323-677 (693)
10 KOG0733 Nuclear AAA ATPase (VC 100.0 2.1E-51 4.5E-56 459.0 31.9 252 325-580 504-774 (802)
11 KOG0729 26S proteasome regulat 100.0 9.7E-46 2.1E-50 381.2 19.1 258 323-583 168-426 (435)
12 KOG0733 Nuclear AAA ATPase (VC 100.0 1.2E-44 2.5E-49 405.1 22.0 227 326-558 184-414 (802)
13 KOG0727 26S proteasome regulat 100.0 4.9E-44 1.1E-48 366.4 23.1 251 324-577 147-398 (408)
14 KOG0728 26S proteasome regulat 100.0 5.7E-44 1.2E-48 365.6 21.8 251 324-577 139-390 (404)
15 KOG0736 Peroxisome assembly fa 100.0 1.2E-43 2.7E-48 405.0 24.3 249 324-577 664-934 (953)
16 COG1223 Predicted ATPase (AAA+ 100.0 1.9E-43 4.2E-48 363.7 20.9 241 324-574 113-354 (368)
17 KOG0652 26S proteasome regulat 100.0 1.4E-43 3E-48 364.4 19.7 251 324-577 163-414 (424)
18 KOG0726 26S proteasome regulat 100.0 7.6E-44 1.6E-48 371.0 16.7 252 324-578 177-429 (440)
19 PTZ00454 26S protease regulato 100.0 2.5E-41 5.4E-46 378.4 28.0 252 324-578 137-389 (398)
20 KOG0738 AAA+-type ATPase [Post 100.0 5.7E-42 1.2E-46 368.6 21.1 245 325-577 205-471 (491)
21 PRK03992 proteasome-activating 100.0 5.6E-40 1.2E-44 367.5 27.7 255 324-581 123-378 (389)
22 PF01434 Peptidase_M41: Peptid 100.0 2.7E-41 5.8E-46 349.3 15.1 212 564-780 1-213 (213)
23 COG0464 SpoVK ATPases of the A 100.0 8.6E-40 1.9E-44 376.3 25.2 250 322-575 232-483 (494)
24 PTZ00361 26 proteosome regulat 100.0 1.1E-39 2.4E-44 368.0 24.2 251 324-577 175-426 (438)
25 KOG0735 AAA+-type ATPase [Post 100.0 1.5E-39 3.3E-44 368.5 22.5 225 328-558 663-888 (952)
26 TIGR01243 CDC48 AAA family ATP 100.0 8.7E-39 1.9E-43 383.8 26.8 250 324-578 445-713 (733)
27 CHL00195 ycf46 Ycf46; Provisio 100.0 3.8E-38 8.3E-43 360.0 25.2 244 326-577 222-465 (489)
28 TIGR01242 26Sp45 26S proteasom 100.0 2.8E-37 6.2E-42 342.8 26.8 249 324-575 114-363 (364)
29 KOG0651 26S proteasome regulat 100.0 3.9E-38 8.5E-43 331.5 13.6 250 324-576 124-374 (388)
30 KOG0739 AAA+-type ATPase [Post 100.0 2.9E-38 6.4E-43 330.2 12.4 227 324-558 125-353 (439)
31 KOG0737 AAA+-type ATPase [Post 100.0 5E-37 1.1E-41 330.8 20.1 227 324-558 84-314 (386)
32 TIGR03689 pup_AAA proteasome A 100.0 1.6E-35 3.5E-40 338.6 24.8 255 322-580 172-483 (512)
33 KOG0730 AAA+-type ATPase [Post 100.0 1.8E-32 4E-37 311.7 21.2 237 327-577 180-418 (693)
34 KOG0741 AAA+-type ATPase [Post 100.0 6.3E-33 1.4E-37 306.9 13.8 251 325-577 212-492 (744)
35 KOG0732 AAA+-type ATPase conta 100.0 1.8E-32 3.8E-37 326.6 18.3 248 326-578 259-528 (1080)
36 PLN00020 ribulose bisphosphate 100.0 6.3E-32 1.4E-36 294.1 21.0 260 327-605 110-393 (413)
37 TIGR01243 CDC48 AAA family ATP 100.0 1E-31 2.2E-36 322.9 24.8 245 326-576 172-436 (733)
38 KOG0740 AAA+-type ATPase [Post 100.0 2.7E-30 5.8E-35 287.1 15.7 227 324-558 145-374 (428)
39 CHL00181 cbbX CbbX; Provisiona 99.9 1.4E-21 3E-26 211.1 20.4 211 331-555 22-254 (287)
40 KOG0742 AAA+-type ATPase [Post 99.9 2E-21 4.4E-26 210.8 19.2 238 327-576 350-613 (630)
41 TIGR02881 spore_V_K stage V sp 99.9 3.1E-21 6.6E-26 205.3 19.6 212 330-556 4-239 (261)
42 KOG0743 AAA+-type ATPase [Post 99.9 2E-21 4.2E-26 215.4 17.9 207 328-547 197-412 (457)
43 TIGR02880 cbbX_cfxQ probable R 99.9 4.4E-21 9.6E-26 206.9 18.8 210 333-556 23-254 (284)
44 PF00004 AAA: ATPase family as 99.9 2.1E-21 4.6E-26 182.2 12.3 130 368-502 1-132 (132)
45 COG0466 Lon ATP-dependent Lon 99.8 6.9E-20 1.5E-24 211.2 14.1 213 329-559 320-545 (782)
46 PRK00080 ruvB Holliday junctio 99.8 6.6E-19 1.4E-23 193.3 18.5 219 325-574 18-249 (328)
47 TIGR00635 ruvB Holliday juncti 99.8 1.2E-18 2.6E-23 188.5 19.5 211 330-574 2-228 (305)
48 PF05496 RuvB_N: Holliday junc 99.8 3.5E-19 7.5E-24 184.1 14.0 197 322-552 14-226 (233)
49 KOG0744 AAA+-type ATPase [Post 99.8 4E-19 8.7E-24 189.1 12.3 239 331-573 141-412 (423)
50 COG0464 SpoVK ATPases of the A 99.8 1.3E-17 2.9E-22 192.6 20.6 219 351-577 4-228 (494)
51 TIGR00763 lon ATP-dependent pr 99.8 4.6E-18 1E-22 206.0 16.6 164 332-516 320-505 (775)
52 COG2256 MGS1 ATPase related to 99.8 6.6E-18 1.4E-22 185.0 15.1 208 322-576 14-239 (436)
53 TIGR02902 spore_lonB ATP-depen 99.8 8.9E-18 1.9E-22 195.6 16.9 219 320-574 53-331 (531)
54 KOG0736 Peroxisome assembly fa 99.7 2.5E-17 5.3E-22 190.4 18.9 222 346-576 412-654 (953)
55 TIGR02639 ClpA ATP-dependent C 99.7 2.2E-17 4.7E-22 199.2 18.3 224 327-576 177-430 (731)
56 KOG0735 AAA+-type ATPase [Post 99.7 3.8E-17 8.2E-22 187.3 18.5 232 332-576 408-649 (952)
57 COG2255 RuvB Holliday junction 99.7 4.8E-17 1E-21 171.4 17.6 216 326-575 20-251 (332)
58 KOG2004 Mitochondrial ATP-depe 99.7 2E-17 4.4E-22 189.9 14.7 176 331-518 410-598 (906)
59 PRK14956 DNA polymerase III su 99.7 2E-16 4.4E-21 179.9 18.6 214 322-572 8-243 (484)
60 PRK14962 DNA polymerase III su 99.7 2.6E-16 5.7E-21 180.5 19.5 208 323-573 5-240 (472)
61 PRK11034 clpA ATP-dependent Cl 99.7 3.4E-16 7.3E-21 188.0 18.9 222 329-576 183-434 (758)
62 PRK04195 replication factor C 99.7 6E-16 1.3E-20 178.6 20.2 210 324-572 6-222 (482)
63 PRK07003 DNA polymerase III su 99.7 5E-16 1.1E-20 182.8 18.1 199 323-554 7-227 (830)
64 PRK14960 DNA polymerase III su 99.7 7E-16 1.5E-20 180.0 19.1 207 323-572 6-240 (702)
65 PRK12323 DNA polymerase III su 99.7 2.6E-16 5.6E-21 183.2 14.9 210 324-570 8-244 (700)
66 PRK00149 dnaA chromosomal repl 99.7 5.6E-16 1.2E-20 177.3 17.5 222 326-576 116-350 (450)
67 PRK14961 DNA polymerase III su 99.7 1.2E-15 2.6E-20 170.2 18.8 213 323-572 7-241 (363)
68 PRK06645 DNA polymerase III su 99.7 1.5E-15 3.3E-20 175.2 19.4 216 323-572 12-253 (507)
69 TIGR00362 DnaA chromosomal rep 99.7 1.6E-15 3.5E-20 171.2 19.0 221 326-576 104-338 (405)
70 PRK14958 DNA polymerase III su 99.7 1.1E-15 2.3E-20 177.1 17.3 207 323-572 7-241 (509)
71 PRK06893 DNA replication initi 99.7 1.8E-15 3.8E-20 158.4 17.2 212 326-572 10-227 (229)
72 PRK13342 recombination factor 99.7 1.6E-15 3.4E-20 171.8 18.1 205 324-576 4-220 (413)
73 TIGR02928 orc1/cdc6 family rep 99.7 9.4E-15 2E-19 161.8 22.8 224 328-575 11-274 (365)
74 PRK14964 DNA polymerase III su 99.6 2.7E-15 5.8E-20 172.2 18.4 205 325-572 6-238 (491)
75 PRK14088 dnaA chromosomal repl 99.6 2.3E-15 4.9E-20 171.9 17.5 224 326-576 99-333 (440)
76 PRK07994 DNA polymerase III su 99.6 2.7E-15 5.9E-20 176.7 18.7 212 324-572 8-241 (647)
77 PRK08691 DNA polymerase III su 99.6 2.3E-15 5E-20 177.0 18.0 212 324-572 8-241 (709)
78 PRK14963 DNA polymerase III su 99.6 5.7E-15 1.2E-19 170.8 20.5 206 323-572 5-237 (504)
79 PRK14949 DNA polymerase III su 99.6 3.9E-15 8.5E-20 178.2 18.4 197 323-552 7-225 (944)
80 TIGR03345 VI_ClpV1 type VI sec 99.6 2.4E-15 5.3E-20 183.4 17.0 218 326-570 181-426 (852)
81 PRK05563 DNA polymerase III su 99.6 6.6E-15 1.4E-19 172.5 19.2 213 323-572 7-241 (559)
82 PRK00411 cdc6 cell division co 99.6 3.6E-14 7.8E-19 158.9 24.3 226 328-576 26-283 (394)
83 PRK14951 DNA polymerase III su 99.6 5.9E-15 1.3E-19 173.5 18.5 212 324-572 8-246 (618)
84 PRK12402 replication factor C 99.6 1.4E-14 3.1E-19 158.2 20.3 211 324-573 7-247 (337)
85 PRK13341 recombination factor 99.6 8E-15 1.7E-19 175.6 19.1 215 321-575 17-247 (725)
86 TIGR03420 DnaA_homol_Hda DnaA 99.6 6.9E-15 1.5E-19 151.9 16.2 206 327-572 10-225 (226)
87 PRK14086 dnaA chromosomal repl 99.6 1.6E-14 3.4E-19 168.6 20.3 221 326-576 282-516 (617)
88 PLN03025 replication factor C 99.6 7.7E-15 1.7E-19 160.8 16.8 203 324-571 5-219 (319)
89 PRK10787 DNA-binding ATP-depen 99.6 5.4E-15 1.2E-19 178.8 16.8 218 332-572 322-579 (784)
90 TIGR02397 dnaX_nterm DNA polym 99.6 1.2E-14 2.6E-19 160.2 18.0 208 323-573 5-240 (355)
91 PHA02544 44 clamp loader, smal 99.6 2.2E-14 4.7E-19 156.1 19.7 207 323-570 12-226 (316)
92 KOG2028 ATPase related to the 99.6 1.3E-14 2.8E-19 156.7 17.0 213 322-576 128-369 (554)
93 PRK08903 DnaA regulatory inact 99.6 2E-14 4.3E-19 149.5 17.6 202 327-573 13-224 (227)
94 PRK14969 DNA polymerase III su 99.6 1.2E-14 2.7E-19 169.1 17.4 212 324-572 8-241 (527)
95 PRK14959 DNA polymerase III su 99.6 1.6E-14 3.4E-19 169.1 17.0 208 322-572 6-241 (624)
96 PRK10865 protein disaggregatio 99.6 1.6E-14 3.5E-19 176.7 17.5 167 326-518 172-356 (857)
97 PRK08084 DNA replication initi 99.6 6.4E-14 1.4E-18 147.3 19.6 206 327-572 17-233 (235)
98 PRK12422 chromosomal replicati 99.6 3.4E-14 7.3E-19 162.3 18.7 226 326-576 105-344 (445)
99 PRK07764 DNA polymerase III su 99.6 2.3E-14 5E-19 173.5 17.6 211 324-570 7-241 (824)
100 PRK14970 DNA polymerase III su 99.6 3.5E-14 7.5E-19 158.2 17.4 213 323-572 8-230 (367)
101 PRK14952 DNA polymerase III su 99.6 3.1E-14 6.6E-19 166.9 17.4 214 323-572 4-241 (584)
102 PRK07940 DNA polymerase III su 99.6 3.2E-14 7E-19 160.0 16.7 190 330-547 3-214 (394)
103 PRK14965 DNA polymerase III su 99.6 2.5E-14 5.5E-19 168.2 16.5 211 324-571 8-240 (576)
104 PRK14957 DNA polymerase III su 99.6 3.6E-14 7.7E-19 165.0 17.4 213 323-572 7-241 (546)
105 PRK05896 DNA polymerase III su 99.6 3.8E-14 8.2E-19 165.3 17.5 212 323-571 7-240 (605)
106 TIGR03346 chaperone_ClpB ATP-d 99.6 4.8E-14 1E-18 172.8 18.9 206 326-557 167-398 (852)
107 CHL00095 clpC Clp protease ATP 99.6 4.9E-14 1.1E-18 172.1 18.9 203 328-557 175-403 (821)
108 PRK07133 DNA polymerase III su 99.6 5.4E-14 1.2E-18 166.8 18.6 213 323-572 9-240 (725)
109 PRK14953 DNA polymerase III su 99.6 1E-13 2.2E-18 159.9 19.5 212 324-572 8-241 (486)
110 PRK08451 DNA polymerase III su 99.5 1.1E-13 2.4E-18 160.3 18.9 212 323-571 5-238 (535)
111 PRK09111 DNA polymerase III su 99.5 1.1E-13 2.3E-18 163.0 19.0 213 323-572 15-254 (598)
112 PRK05342 clpX ATP-dependent pr 99.5 8.3E-14 1.8E-18 157.5 17.2 182 330-514 68-323 (412)
113 KOG0989 Replication factor C, 99.5 3.1E-14 6.8E-19 151.7 12.8 195 322-553 26-236 (346)
114 PTZ00112 origin recognition co 99.5 2.1E-13 4.6E-18 161.3 20.8 219 332-577 755-1008(1164)
115 PRK06647 DNA polymerase III su 99.5 1.1E-13 2.3E-18 162.2 18.2 212 324-572 8-241 (563)
116 COG2812 DnaX DNA polymerase II 99.5 8.4E-14 1.8E-18 159.8 16.5 198 325-555 9-228 (515)
117 PRK14955 DNA polymerase III su 99.5 8.8E-14 1.9E-18 157.0 16.1 217 323-572 7-254 (397)
118 PRK08727 hypothetical protein; 99.5 3E-13 6.5E-18 142.1 19.0 209 327-574 14-230 (233)
119 PRK06305 DNA polymerase III su 99.5 1.9E-13 4E-18 156.6 18.1 213 323-572 8-243 (451)
120 PRK14948 DNA polymerase III su 99.5 2.6E-13 5.7E-18 160.5 19.1 211 322-570 6-240 (620)
121 PRK05642 DNA replication initi 99.5 4.6E-13 9.9E-18 140.9 18.7 180 365-572 45-232 (234)
122 PRK14087 dnaA chromosomal repl 99.5 3.1E-13 6.7E-18 154.8 18.0 192 365-575 141-348 (450)
123 PRK14954 DNA polymerase III su 99.5 4.3E-13 9.4E-18 158.2 19.3 216 324-572 8-254 (620)
124 PRK00440 rfc replication facto 99.5 7.6E-13 1.6E-17 143.4 19.8 206 323-573 8-224 (319)
125 PF00308 Bac_DnaA: Bacterial d 99.5 2.7E-13 5.9E-18 141.3 15.2 200 327-555 3-216 (219)
126 PRK14950 DNA polymerase III su 99.5 4.6E-13 1E-17 158.1 18.8 213 323-572 7-242 (585)
127 COG1224 TIP49 DNA helicase TIP 99.5 1E-12 2.2E-17 142.3 18.3 99 472-574 321-431 (450)
128 PF05673 DUF815: Protein of un 99.5 1.2E-12 2.5E-17 137.5 18.2 195 325-550 20-244 (249)
129 PRK06620 hypothetical protein; 99.5 4.9E-13 1.1E-17 139.0 15.3 196 326-572 10-213 (214)
130 TIGR02640 gas_vesic_GvpN gas v 99.5 1.3E-12 2.9E-17 139.6 17.2 184 366-577 22-259 (262)
131 PRK13407 bchI magnesium chelat 99.5 3.8E-13 8.3E-18 148.3 13.3 220 327-576 3-307 (334)
132 TIGR00390 hslU ATP-dependent p 99.5 2.4E-13 5.2E-18 152.2 11.0 175 333-512 13-342 (441)
133 TIGR00382 clpX endopeptidase C 99.5 9.6E-13 2.1E-17 148.6 15.9 180 333-515 78-330 (413)
134 PRK11034 clpA ATP-dependent Cl 99.4 1.3E-12 2.9E-17 157.3 17.7 165 333-518 459-668 (758)
135 PRK05201 hslU ATP-dependent pr 99.4 6.4E-13 1.4E-17 148.9 11.9 176 333-513 16-345 (443)
136 TIGR02903 spore_lon_C ATP-depe 99.4 6.2E-12 1.3E-16 149.1 20.6 221 324-574 146-429 (615)
137 TIGR02639 ClpA ATP-dependent C 99.4 2.1E-12 4.5E-17 156.3 16.3 163 332-518 454-664 (731)
138 COG0593 DnaA ATPase involved i 99.4 7.9E-12 1.7E-16 140.2 18.6 229 325-580 80-318 (408)
139 PRK14971 DNA polymerase III su 99.4 6.3E-12 1.4E-16 148.8 18.8 211 325-572 10-243 (614)
140 PRK09087 hypothetical protein; 99.4 3.5E-12 7.6E-17 133.7 14.0 172 366-574 45-221 (226)
141 CHL00081 chlI Mg-protoporyphyr 99.4 3.3E-12 7.1E-17 141.5 13.8 222 327-577 12-324 (350)
142 TIGR02030 BchI-ChlI magnesium 99.4 7.5E-12 1.6E-16 138.3 14.7 216 330-577 2-311 (337)
143 COG1474 CDC6 Cdc6-related prot 99.3 6.4E-11 1.4E-15 132.4 21.0 218 332-575 17-265 (366)
144 TIGR01650 PD_CobS cobaltochela 99.3 1.3E-11 2.9E-16 135.0 14.6 138 365-517 64-234 (327)
145 cd00009 AAA The AAA+ (ATPases 99.3 2.4E-11 5.3E-16 113.6 13.5 124 364-501 18-150 (151)
146 PF05621 TniB: Bacterial TniB 99.3 3E-11 6.6E-16 130.3 16.0 221 330-570 32-284 (302)
147 TIGR02442 Cob-chelat-sub cobal 99.3 1.8E-11 3.8E-16 145.9 15.0 215 330-577 2-306 (633)
148 TIGR03345 VI_ClpV1 type VI sec 99.3 4.1E-11 8.9E-16 146.7 17.7 163 332-518 566-782 (852)
149 PRK09112 DNA polymerase III su 99.2 1.7E-10 3.7E-15 128.4 17.5 190 327-551 18-244 (351)
150 COG0714 MoxR-like ATPases [Gen 99.2 1.9E-10 4E-15 126.8 17.4 129 366-515 44-201 (329)
151 TIGR00368 Mg chelatase-related 99.2 1.2E-10 2.7E-15 134.8 16.0 211 329-573 189-497 (499)
152 PF06068 TIP49: TIP49 C-termin 99.2 1.4E-10 3E-15 127.7 15.4 68 329-403 21-90 (398)
153 TIGR03346 chaperone_ClpB ATP-d 99.2 1.7E-10 3.7E-15 141.8 18.0 166 332-517 565-777 (852)
154 CHL00095 clpC Clp protease ATP 99.2 1.6E-10 3.5E-15 141.6 17.4 166 332-518 509-734 (821)
155 smart00382 AAA ATPases associa 99.2 3.5E-11 7.5E-16 111.1 8.0 129 365-503 2-147 (148)
156 PRK10865 protein disaggregatio 99.2 2.9E-10 6.3E-15 139.6 18.3 167 331-518 567-781 (857)
157 smart00350 MCM minichromosome 99.2 2E-10 4.2E-15 133.9 15.8 223 333-575 204-504 (509)
158 PRK07471 DNA polymerase III su 99.2 2.3E-10 5E-15 128.0 15.7 185 327-548 14-239 (365)
159 COG0542 clpA ATP-binding subun 99.2 3.1E-10 6.6E-15 135.3 17.4 209 324-558 162-396 (786)
160 TIGR00764 lon_rel lon-related 99.2 1.4E-10 3.1E-15 137.3 14.4 104 471-577 268-393 (608)
161 COG0542 clpA ATP-binding subun 99.2 9.5E-11 2.1E-15 139.6 12.0 164 332-518 491-707 (786)
162 COG2607 Predicted ATPase (AAA+ 99.2 1.2E-09 2.5E-14 113.8 17.8 195 325-550 53-276 (287)
163 KOG1942 DNA helicase, TBP-inte 99.2 1.1E-09 2.3E-14 116.4 17.2 101 472-576 326-439 (456)
164 PRK13531 regulatory ATPase Rav 99.2 9.7E-10 2.1E-14 125.7 18.1 214 333-578 21-286 (498)
165 PRK15424 propionate catabolism 99.1 1.3E-10 2.9E-15 135.4 11.1 200 329-556 216-466 (538)
166 PRK05564 DNA polymerase III su 99.1 4.5E-10 9.8E-15 122.9 14.3 174 329-538 1-182 (313)
167 PHA02244 ATPase-like protein 99.1 1.5E-09 3.2E-14 120.6 18.1 150 329-507 94-265 (383)
168 TIGR02329 propionate_PrpR prop 99.1 1.9E-10 4.1E-15 134.1 11.5 213 328-569 208-464 (526)
169 TIGR00602 rad24 checkpoint pro 99.1 6.2E-10 1.3E-14 131.8 15.5 257 322-605 74-388 (637)
170 PRK07399 DNA polymerase III su 99.1 1E-09 2.2E-14 120.5 15.6 183 330-549 2-223 (314)
171 TIGR03015 pepcterm_ATPase puta 99.1 3.1E-09 6.6E-14 112.8 18.5 191 366-574 44-265 (269)
172 PF01078 Mg_chelatase: Magnesi 99.1 1E-10 2.3E-15 120.4 6.9 143 330-506 1-205 (206)
173 TIGR01817 nifA Nif-specific re 99.1 2.1E-10 4.5E-15 134.4 9.3 209 326-569 190-439 (534)
174 PF07728 AAA_5: AAA domain (dy 99.1 1.3E-10 2.9E-15 111.4 6.4 113 367-494 1-139 (139)
175 PRK11331 5-methylcytosine-spec 99.1 8.4E-10 1.8E-14 125.3 13.7 155 331-502 174-357 (459)
176 PRK09862 putative ATP-dependen 99.1 1.4E-09 3.1E-14 125.8 15.3 210 329-573 188-490 (506)
177 TIGR00678 holB DNA polymerase 99.1 1.4E-09 3E-14 110.1 13.4 144 363-538 12-183 (188)
178 COG0606 Predicted ATPase with 99.1 2.1E-10 4.5E-15 129.4 7.3 212 328-573 175-483 (490)
179 PRK04132 replication factor C 99.1 1.8E-09 3.9E-14 131.0 15.7 171 368-571 567-750 (846)
180 KOG1969 DNA replication checkp 99.0 7.3E-09 1.6E-13 120.8 19.2 205 323-558 262-518 (877)
181 COG0470 HolB ATPase involved i 99.0 2E-09 4.2E-14 116.8 13.8 146 332-509 1-174 (325)
182 TIGR02031 BchD-ChlD magnesium 99.0 2.3E-09 5E-14 126.9 15.4 189 366-577 17-260 (589)
183 PRK05022 anaerobic nitric oxid 99.0 1.1E-09 2.4E-14 127.7 12.6 198 330-556 185-421 (509)
184 COG1221 PspF Transcriptional r 99.0 5.7E-10 1.2E-14 125.1 9.5 198 327-556 73-310 (403)
185 COG3829 RocR Transcriptional r 99.0 4.8E-10 1E-14 127.9 9.0 212 327-569 240-491 (560)
186 COG1219 ClpX ATP-dependent pro 99.0 6.1E-10 1.3E-14 119.6 8.6 126 333-466 62-203 (408)
187 PRK11388 DNA-binding transcrip 99.0 9.9E-10 2.1E-14 131.3 11.4 210 328-572 321-568 (638)
188 PRK11608 pspF phage shock prot 99.0 1.8E-09 4E-14 119.1 12.6 195 331-555 5-240 (326)
189 PRK10820 DNA-binding transcrip 99.0 1.4E-09 3.1E-14 127.0 12.4 210 327-568 199-447 (520)
190 TIGR02974 phageshock_pspF psp 99.0 1.2E-09 2.5E-14 120.8 10.8 193 334-555 1-233 (329)
191 PRK15429 formate hydrogenlyase 99.0 3.5E-09 7.7E-14 127.6 14.6 199 328-555 372-609 (686)
192 PRK05707 DNA polymerase III su 99.0 6E-09 1.3E-13 115.1 13.6 160 362-547 19-203 (328)
193 COG1220 HslU ATP-dependent pro 99.0 4.4E-09 9.4E-14 113.8 12.0 83 426-513 252-346 (444)
194 PF07724 AAA_2: AAA domain (Cd 98.9 1.3E-09 2.8E-14 109.8 6.7 111 366-482 4-131 (171)
195 PRK08116 hypothetical protein; 98.9 7.3E-09 1.6E-13 111.4 13.0 124 364-505 113-251 (268)
196 PRK08058 DNA polymerase III su 98.9 7.1E-09 1.5E-13 114.6 12.9 154 330-514 3-180 (329)
197 smart00763 AAA_PrkA PrkA AAA d 98.9 1.3E-08 2.7E-13 113.0 13.5 83 331-420 49-144 (361)
198 KOG0991 Replication factor C, 98.9 4E-09 8.6E-14 109.3 8.8 204 323-571 18-233 (333)
199 KOG2680 DNA helicase TIP49, TB 98.9 3.2E-08 7E-13 105.6 15.4 100 473-576 319-430 (454)
200 KOG0741 AAA+-type ATPase [Post 98.9 1.8E-08 4E-13 114.0 13.9 156 346-514 525-684 (744)
201 PTZ00111 DNA replication licen 98.8 2.6E-08 5.7E-13 120.7 14.2 160 333-514 451-655 (915)
202 COG3604 FhlA Transcriptional r 98.8 1.3E-08 2.7E-13 115.3 9.0 203 327-555 218-456 (550)
203 PRK06964 DNA polymerase III su 98.8 2.8E-08 6E-13 110.4 11.6 135 361-515 17-203 (342)
204 TIGR02915 PEP_resp_reg putativ 98.8 1.6E-08 3.4E-13 115.4 9.7 206 330-567 137-381 (445)
205 COG2204 AtoC Response regulato 98.8 2.4E-08 5.3E-13 113.9 10.5 209 328-568 137-384 (464)
206 PRK13765 ATP-dependent proteas 98.7 7.8E-08 1.7E-12 114.4 14.3 101 471-574 277-399 (637)
207 PRK07952 DNA replication prote 98.7 9.3E-08 2E-12 101.6 13.2 133 326-481 66-205 (244)
208 PRK12377 putative replication 98.7 7.8E-08 1.7E-12 102.4 12.4 101 365-481 101-206 (248)
209 PF00158 Sigma54_activat: Sigm 98.7 1.4E-08 2.9E-13 102.1 6.1 134 334-495 1-155 (168)
210 PRK10923 glnG nitrogen regulat 98.7 5.6E-08 1.2E-12 111.8 11.0 206 330-570 136-383 (469)
211 COG1239 ChlI Mg-chelatase subu 98.7 1.4E-07 3E-12 105.6 13.0 160 328-517 13-233 (423)
212 KOG0745 Putative ATP-dependent 98.7 5.2E-08 1.1E-12 108.4 9.5 97 366-465 227-331 (564)
213 PRK06871 DNA polymerase III su 98.7 2E-07 4.3E-12 102.9 13.9 134 362-515 21-178 (325)
214 PRK08939 primosomal protein Dn 98.7 1.5E-07 3.2E-12 103.3 12.5 133 328-481 123-261 (306)
215 PF13177 DNA_pol3_delta2: DNA 98.7 3.2E-08 6.9E-13 98.7 6.7 136 336-502 1-160 (162)
216 PRK11361 acetoacetate metaboli 98.7 1.6E-07 3.4E-12 107.5 12.8 205 330-569 141-387 (457)
217 KOG2227 Pre-initiation complex 98.7 6.8E-07 1.5E-11 100.8 17.2 204 333-559 151-383 (529)
218 KOG1514 Origin recognition com 98.6 5.7E-07 1.2E-11 105.3 15.8 195 367-577 424-657 (767)
219 PRK06526 transposase; Provisio 98.6 1.2E-07 2.5E-12 101.4 9.0 101 364-481 97-201 (254)
220 PRK07993 DNA polymerase III su 98.6 3.2E-07 6.9E-12 101.8 12.6 133 362-514 21-178 (334)
221 PRK08181 transposase; Validate 98.6 2.7E-07 5.9E-12 99.4 11.6 100 365-481 106-209 (269)
222 KOG0990 Replication factor C, 98.6 1.2E-07 2.6E-12 102.5 7.3 166 322-521 31-208 (360)
223 PRK15115 response regulator Gl 98.5 5.4E-07 1.2E-11 102.9 13.2 179 366-569 158-378 (444)
224 PF03215 Rad17: Rad17 cell cyc 98.5 1.3E-06 2.9E-11 101.9 16.4 209 323-556 10-269 (519)
225 PRK13406 bchD magnesium chelat 98.5 4.3E-07 9.3E-12 107.4 12.4 191 366-577 26-252 (584)
226 PF01637 Arch_ATPase: Archaeal 98.5 5.1E-07 1.1E-11 92.3 11.4 166 365-545 20-232 (234)
227 PF07726 AAA_3: ATPase family 98.5 2.1E-08 4.6E-13 96.2 0.4 111 367-494 1-129 (131)
228 PRK08769 DNA polymerase III su 98.5 5.5E-07 1.2E-11 99.2 11.2 133 362-514 23-183 (319)
229 COG1484 DnaC DNA replication p 98.5 8.8E-07 1.9E-11 94.8 12.2 73 364-437 104-180 (254)
230 TIGR01818 ntrC nitrogen regula 98.5 3.7E-07 7.9E-12 104.7 9.8 210 331-572 133-381 (463)
231 PRK06835 DNA replication prote 98.5 8.1E-07 1.8E-11 98.4 11.7 100 366-481 184-289 (329)
232 PRK06921 hypothetical protein; 98.5 1.3E-06 2.9E-11 94.0 12.8 69 364-435 116-188 (266)
233 PRK06090 DNA polymerase III su 98.4 1.2E-06 2.6E-11 96.6 11.9 133 362-514 22-178 (319)
234 PRK10365 transcriptional regul 98.4 5E-07 1.1E-11 102.8 9.1 202 333-569 140-383 (441)
235 PRK09183 transposase/IS protei 98.4 8.2E-07 1.8E-11 95.2 10.1 73 364-437 101-177 (259)
236 PF14532 Sigma54_activ_2: Sigm 98.4 1.1E-07 2.5E-12 91.8 2.8 81 335-439 1-84 (138)
237 KOG1051 Chaperone HSP104 and r 98.4 1.1E-06 2.5E-11 106.6 11.6 126 333-480 563-710 (898)
238 PF13173 AAA_14: AAA domain 98.4 1.6E-06 3.4E-11 82.8 10.2 118 366-507 3-126 (128)
239 PF01695 IstB_IS21: IstB-like 98.4 5.4E-07 1.2E-11 91.4 7.2 72 363-436 45-120 (178)
240 PRK08699 DNA polymerase III su 98.4 1.1E-06 2.4E-11 97.2 10.0 132 362-514 18-183 (325)
241 PF13401 AAA_22: AAA domain; P 98.4 1.2E-06 2.5E-11 82.6 8.7 98 365-478 4-125 (131)
242 KOG0478 DNA replication licens 98.3 4.2E-06 9.1E-11 97.7 12.1 133 363-506 460-616 (804)
243 PF00493 MCM: MCM2/3/5 family 98.3 1.9E-07 4E-12 103.5 1.0 219 333-575 25-326 (331)
244 COG1241 MCM2 Predicted ATPase 98.3 2.2E-06 4.8E-11 102.0 9.8 223 331-576 285-593 (682)
245 KOG1970 Checkpoint RAD17-RFC c 98.3 2.6E-05 5.7E-10 89.6 17.7 210 324-555 74-320 (634)
246 KOG2035 Replication factor C, 98.3 6.8E-06 1.5E-10 87.6 12.0 180 326-538 7-220 (351)
247 PF05729 NACHT: NACHT domain 98.2 1.4E-05 2.9E-10 77.6 11.9 142 367-518 2-165 (166)
248 PF03969 AFG1_ATPase: AFG1-lik 98.2 7.3E-06 1.6E-10 92.0 11.1 103 362-481 59-168 (362)
249 cd01120 RecA-like_NTPases RecA 98.2 8.6E-06 1.9E-10 78.3 10.2 110 368-482 2-138 (165)
250 PF12775 AAA_7: P-loop contain 98.2 1E-05 2.3E-10 87.4 11.3 139 365-518 33-195 (272)
251 KOG0480 DNA replication licens 98.2 7E-06 1.5E-10 95.3 10.2 222 330-574 343-642 (764)
252 TIGR02237 recomb_radB DNA repa 98.0 2.3E-05 5E-10 80.4 9.3 114 362-479 9-148 (209)
253 KOG0482 DNA replication licens 98.0 1.1E-05 2.4E-10 91.5 7.2 172 332-514 342-537 (721)
254 PLN03210 Resistant to P. syrin 98.0 5E-05 1.1E-09 97.1 13.3 179 327-540 179-389 (1153)
255 COG3284 AcoR Transcriptional a 97.9 1.3E-05 2.7E-10 93.8 6.7 184 367-572 338-554 (606)
256 PF00931 NB-ARC: NB-ARC domain 97.9 0.00013 2.9E-09 78.0 13.7 174 343-547 4-202 (287)
257 PRK05818 DNA polymerase III su 97.9 0.00022 4.7E-09 76.5 14.5 121 363-503 5-147 (261)
258 PRK05917 DNA polymerase III su 97.9 4.5E-05 9.8E-10 83.1 9.2 122 362-503 16-154 (290)
259 COG1485 Predicted ATPase [Gene 97.9 3E-05 6.5E-10 85.5 7.5 131 337-485 30-176 (367)
260 KOG0481 DNA replication licens 97.8 8.1E-05 1.7E-09 84.8 10.2 206 333-551 332-581 (729)
261 COG3267 ExeA Type II secretory 97.8 0.00052 1.1E-08 73.0 15.7 185 368-569 54-267 (269)
262 KOG0477 DNA replication licens 97.8 9E-05 2E-09 86.0 10.6 169 333-517 450-651 (854)
263 cd01124 KaiC KaiC is a circadi 97.8 0.00015 3.2E-09 72.6 11.1 102 368-481 2-140 (187)
264 KOG1051 Chaperone HSP104 and r 97.8 0.00013 2.7E-09 89.3 12.2 201 331-557 185-412 (898)
265 COG3283 TyrR Transcriptional r 97.8 6.3E-05 1.4E-09 82.7 8.6 201 327-555 199-432 (511)
266 PRK07132 DNA polymerase III su 97.8 0.00031 6.7E-09 77.1 13.4 127 363-514 16-160 (299)
267 PF12774 AAA_6: Hydrolytic ATP 97.8 0.00022 4.9E-09 75.4 11.8 134 365-512 32-176 (231)
268 PF00910 RNA_helicase: RNA hel 97.7 6.7E-05 1.4E-09 69.7 6.9 23 368-390 1-23 (107)
269 TIGR01618 phage_P_loop phage n 97.7 7.6E-05 1.6E-09 78.4 8.0 73 364-438 11-95 (220)
270 PRK07276 DNA polymerase III su 97.7 0.00041 8.8E-09 75.8 13.7 129 362-513 21-172 (290)
271 PRK00131 aroK shikimate kinase 97.6 0.00018 3.9E-09 70.9 8.5 35 363-397 2-36 (175)
272 PRK09361 radB DNA repair and r 97.6 0.00022 4.9E-09 74.2 9.6 39 361-399 19-60 (225)
273 KOG2170 ATPase of the AAA+ sup 97.6 0.00091 2E-08 72.6 14.0 96 333-437 83-191 (344)
274 PRK11823 DNA repair protein Ra 97.6 0.00028 6E-09 81.6 10.9 79 361-439 76-171 (446)
275 TIGR02012 tigrfam_recA protein 97.6 0.00023 5E-09 78.7 9.6 119 361-479 51-190 (321)
276 TIGR02858 spore_III_AA stage I 97.6 0.00017 3.6E-09 78.1 7.7 113 366-501 112-256 (270)
277 TIGR02688 conserved hypothetic 97.5 0.0012 2.6E-08 75.2 14.5 93 365-480 209-314 (449)
278 PF13207 AAA_17: AAA domain; P 97.5 6.9E-05 1.5E-09 69.8 3.8 30 368-397 2-31 (121)
279 KOG1968 Replication factor C, 97.5 6.2E-05 1.3E-09 92.4 4.4 208 324-554 312-535 (871)
280 PHA00729 NTP-binding motif con 97.5 0.00014 3E-09 76.6 6.4 25 366-390 18-42 (226)
281 PRK08533 flagellar accessory p 97.5 0.0008 1.7E-08 71.0 12.0 76 362-437 21-130 (230)
282 cd01121 Sms Sms (bacterial rad 97.5 0.00043 9.3E-09 78.2 10.6 79 361-439 78-173 (372)
283 PF06480 FtsH_ext: FtsH Extrac 97.5 2.9E-05 6.2E-10 70.8 0.9 31 178-208 25-55 (110)
284 cd01394 radB RadB. The archaea 97.5 0.00051 1.1E-08 71.1 10.1 38 362-399 16-56 (218)
285 PRK15455 PrkA family serine pr 97.5 0.00011 2.5E-09 86.0 5.6 63 330-398 74-137 (644)
286 cd03283 ABC_MutS-like MutS-lik 97.5 0.00048 1E-08 71.1 9.7 104 366-484 26-151 (199)
287 PRK08118 topology modulation p 97.5 0.00018 3.9E-09 72.3 6.3 32 367-398 3-34 (167)
288 PRK06067 flagellar accessory p 97.5 0.00062 1.3E-08 71.5 10.4 39 361-399 21-62 (234)
289 COG1618 Predicted nucleotide k 97.5 0.00084 1.8E-08 67.1 10.5 26 364-389 4-29 (179)
290 PRK00771 signal recognition pa 97.5 0.0011 2.4E-08 76.3 13.0 37 363-399 93-132 (437)
291 COG1373 Predicted ATPase (AAA+ 97.4 0.0018 3.9E-08 73.8 14.2 135 367-522 39-186 (398)
292 cd00983 recA RecA is a bacter 97.4 0.00048 1E-08 76.3 8.9 118 362-479 52-190 (325)
293 PF13671 AAA_33: AAA domain; P 97.4 0.00049 1.1E-08 65.8 7.9 36 368-405 2-37 (143)
294 PRK07261 topology modulation p 97.4 0.00028 6.1E-09 71.0 6.0 32 368-399 3-34 (171)
295 PF05707 Zot: Zonular occluden 97.4 0.00019 4.1E-09 73.5 4.8 124 368-504 3-147 (193)
296 PF14516 AAA_35: AAA-like doma 97.3 0.01 2.2E-07 66.1 18.5 172 365-548 31-240 (331)
297 PRK14722 flhF flagellar biosyn 97.3 0.00047 1E-08 77.8 8.0 110 363-488 135-266 (374)
298 cd01128 rho_factor Transcripti 97.3 0.0021 4.5E-08 68.9 12.5 27 365-391 16-42 (249)
299 PRK12723 flagellar biosynthesi 97.3 0.0011 2.5E-08 75.2 10.9 131 363-509 172-328 (388)
300 PRK09376 rho transcription ter 97.3 0.00075 1.6E-08 76.3 9.0 73 368-440 172-272 (416)
301 cd01131 PilT Pilus retraction 97.3 0.0009 2E-08 68.9 8.6 66 368-433 4-83 (198)
302 PRK10536 hypothetical protein; 97.2 0.00099 2.1E-08 71.5 8.7 46 329-388 52-97 (262)
303 cd00046 DEXDc DEAD-like helica 97.2 0.0016 3.4E-08 60.0 9.1 24 366-389 1-24 (144)
304 PF00437 T2SE: Type II/IV secr 97.2 0.00026 5.7E-09 75.8 4.2 100 326-435 98-208 (270)
305 PF06745 KaiC: KaiC; InterPro 97.2 0.0013 2.8E-08 68.5 9.2 108 361-479 15-159 (226)
306 cd01123 Rad51_DMC1_radA Rad51_ 97.2 0.001 2.2E-08 69.4 8.5 117 361-479 15-168 (235)
307 cd01393 recA_like RecA is a b 97.2 0.00083 1.8E-08 69.7 7.6 116 361-478 15-166 (226)
308 TIGR03877 thermo_KaiC_1 KaiC d 97.2 0.0027 5.9E-08 67.1 11.6 40 361-400 17-59 (237)
309 PF06309 Torsin: Torsin; Inte 97.2 0.001 2.2E-08 64.1 7.4 52 332-389 25-77 (127)
310 KOG2383 Predicted ATPase [Gene 97.2 0.0021 4.6E-08 72.1 10.9 158 362-552 111-297 (467)
311 PRK06762 hypothetical protein; 97.2 0.0014 3E-08 64.9 8.5 40 365-404 2-41 (166)
312 PF07693 KAP_NTPase: KAP famil 97.2 0.0063 1.4E-07 66.5 14.5 28 363-390 18-45 (325)
313 COG1116 TauB ABC-type nitrate/ 97.2 0.0011 2.4E-08 70.4 7.9 23 366-388 30-52 (248)
314 PF03266 NTPase_1: NTPase; In 97.2 0.00069 1.5E-08 68.3 6.2 27 367-393 1-30 (168)
315 PRK13948 shikimate kinase; Pro 97.2 0.0014 3E-08 67.0 8.4 43 363-407 8-50 (182)
316 cd03216 ABC_Carb_Monos_I This 97.1 0.001 2.2E-08 66.2 7.2 106 362-482 23-143 (163)
317 cd00464 SK Shikimate kinase (S 97.1 0.00075 1.6E-08 65.4 6.1 39 367-407 1-39 (154)
318 PF10236 DAP3: Mitochondrial r 97.1 0.016 3.6E-07 63.9 17.3 122 424-546 156-308 (309)
319 COG0703 AroK Shikimate kinase 97.1 0.0011 2.3E-08 67.1 7.1 32 366-397 3-34 (172)
320 PRK14974 cell division protein 97.1 0.0021 4.6E-08 71.7 10.2 73 364-436 139-234 (336)
321 PRK13947 shikimate kinase; Pro 97.1 0.00044 9.5E-09 68.6 4.3 31 367-397 3-33 (171)
322 PF13191 AAA_16: AAA ATPase do 97.1 0.00035 7.5E-09 69.4 3.3 59 334-401 2-63 (185)
323 COG4178 ABC-type uncharacteriz 97.1 0.001 2.2E-08 78.6 7.5 105 361-481 415-574 (604)
324 PRK04040 adenylate kinase; Pro 97.1 0.0052 1.1E-07 63.0 11.8 31 365-395 2-34 (188)
325 TIGR00416 sms DNA repair prote 97.1 0.0024 5.2E-08 74.0 10.3 78 361-438 90-184 (454)
326 PF13604 AAA_30: AAA domain; P 97.1 0.0014 3E-08 67.5 7.3 98 366-480 19-132 (196)
327 PRK13946 shikimate kinase; Pro 97.0 0.0017 3.8E-08 65.9 7.9 34 364-397 9-42 (184)
328 TIGR01420 pilT_fam pilus retra 97.0 0.0014 3E-08 73.2 7.8 69 366-434 123-205 (343)
329 KOG2228 Origin recognition com 97.0 0.0032 7E-08 69.3 10.2 160 334-516 26-219 (408)
330 PRK05973 replicative DNA helic 97.0 0.0085 1.9E-07 63.8 13.2 39 361-399 60-101 (237)
331 PRK03839 putative kinase; Prov 97.0 0.00053 1.1E-08 69.0 3.9 30 368-397 3-32 (180)
332 cd01122 GP4d_helicase GP4d_hel 97.0 0.0026 5.5E-08 68.0 9.2 38 361-398 26-67 (271)
333 cd01130 VirB11-like_ATPase Typ 97.0 0.00075 1.6E-08 68.6 4.9 71 364-434 24-110 (186)
334 PRK00625 shikimate kinase; Pro 97.0 0.00064 1.4E-08 68.8 4.2 31 367-397 2-32 (173)
335 PRK13949 shikimate kinase; Pro 97.0 0.0012 2.7E-08 66.4 6.1 32 366-397 2-33 (169)
336 TIGR02782 TrbB_P P-type conjug 97.0 0.00062 1.3E-08 74.7 4.3 70 365-434 132-214 (299)
337 PRK09354 recA recombinase A; P 97.0 0.0025 5.3E-08 71.4 9.0 77 362-438 57-152 (349)
338 COG5271 MDN1 AAA ATPase contai 97.0 0.003 6.4E-08 79.9 10.1 137 365-517 1543-1704(4600)
339 PRK10867 signal recognition pa 97.0 0.0078 1.7E-07 69.4 13.1 74 362-435 97-194 (433)
340 COG3854 SpoIIIAA ncharacterize 96.9 0.0021 4.6E-08 67.6 7.3 70 366-435 138-229 (308)
341 cd00227 CPT Chloramphenicol (C 96.9 0.00087 1.9E-08 67.3 4.5 38 366-403 3-40 (175)
342 TIGR03880 KaiC_arch_3 KaiC dom 96.9 0.0078 1.7E-07 62.7 11.6 39 361-399 12-53 (224)
343 COG2274 SunT ABC-type bacterio 96.9 0.0019 4.2E-08 78.4 8.1 69 411-502 614-682 (709)
344 PRK04296 thymidine kinase; Pro 96.9 0.0026 5.6E-08 65.2 7.8 70 367-436 4-90 (190)
345 TIGR01359 UMP_CMP_kin_fam UMP- 96.9 0.00084 1.8E-08 67.3 4.0 35 368-404 2-36 (183)
346 cd00984 DnaB_C DnaB helicase C 96.9 0.0034 7.3E-08 65.8 8.6 38 361-398 9-50 (242)
347 PRK14532 adenylate kinase; Pro 96.9 0.00091 2E-08 67.6 4.1 36 367-404 2-37 (188)
348 TIGR03881 KaiC_arch_4 KaiC dom 96.9 0.0095 2.1E-07 62.1 11.8 38 361-398 16-56 (229)
349 PTZ00202 tuzin; Provisional 96.9 0.068 1.5E-06 61.6 19.1 63 329-400 259-321 (550)
350 cd03281 ABC_MSH5_euk MutS5 hom 96.9 0.0059 1.3E-07 63.8 10.1 23 365-387 29-51 (213)
351 COG4619 ABC-type uncharacteriz 96.9 0.0051 1.1E-07 62.1 9.0 26 363-388 27-52 (223)
352 TIGR03574 selen_PSTK L-seryl-t 96.9 0.0042 9.1E-08 66.0 9.2 36 368-403 2-40 (249)
353 cd03247 ABCC_cytochrome_bd The 96.9 0.0042 9.1E-08 62.5 8.7 107 362-484 25-160 (178)
354 PRK04841 transcriptional regul 96.9 0.012 2.7E-07 73.0 14.6 155 366-545 33-223 (903)
355 PRK11889 flhF flagellar biosyn 96.8 0.0084 1.8E-07 68.1 11.7 72 364-435 240-331 (436)
356 PLN02200 adenylate kinase fami 96.8 0.0013 2.8E-08 69.8 5.1 42 361-404 39-80 (234)
357 cd02020 CMPK Cytidine monophos 96.8 0.00097 2.1E-08 63.9 3.8 30 368-397 2-31 (147)
358 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.8 0.0052 1.1E-07 60.0 8.9 101 362-482 23-128 (144)
359 smart00534 MUTSac ATPase domai 96.8 0.0053 1.1E-07 62.4 9.2 19 368-386 2-20 (185)
360 cd03228 ABCC_MRP_Like The MRP 96.8 0.003 6.4E-08 63.2 7.3 107 362-484 25-158 (171)
361 PRK05800 cobU adenosylcobinami 96.8 0.0059 1.3E-07 61.7 9.4 90 367-464 3-113 (170)
362 PRK08154 anaerobic benzoate ca 96.8 0.004 8.7E-08 68.6 8.9 35 362-396 130-164 (309)
363 cd03238 ABC_UvrA The excision 96.8 0.0071 1.5E-07 61.5 10.0 118 363-502 19-163 (176)
364 PRK13695 putative NTPase; Prov 96.8 0.0081 1.8E-07 60.2 10.3 22 368-389 3-24 (174)
365 PRK14531 adenylate kinase; Pro 96.8 0.0013 2.8E-08 66.7 4.4 36 366-403 3-38 (183)
366 PRK13764 ATPase; Provisional 96.8 0.0018 3.8E-08 77.2 6.2 70 365-435 257-335 (602)
367 PRK06217 hypothetical protein; 96.8 0.0012 2.7E-08 66.7 4.2 31 367-397 3-33 (183)
368 cd00267 ABC_ATPase ABC (ATP-bi 96.8 0.0034 7.3E-08 61.7 7.1 107 363-484 23-143 (157)
369 PRK12724 flagellar biosynthesi 96.8 0.01 2.2E-07 68.0 11.8 69 364-432 222-307 (432)
370 PRK13900 type IV secretion sys 96.8 0.0016 3.4E-08 72.6 5.2 71 364-434 159-245 (332)
371 KOG2543 Origin recognition com 96.8 0.018 3.9E-07 64.6 13.3 160 332-515 6-192 (438)
372 cd02027 APSK Adenosine 5'-phos 96.8 0.0044 9.6E-08 60.9 7.9 36 368-403 2-40 (149)
373 cd02021 GntK Gluconate kinase 96.8 0.0013 2.7E-08 64.0 3.9 28 368-395 2-29 (150)
374 TIGR03878 thermo_KaiC_2 KaiC d 96.8 0.0089 1.9E-07 64.2 10.8 39 361-399 32-73 (259)
375 cd03223 ABCD_peroxisomal_ALDP 96.8 0.0058 1.3E-07 61.0 8.8 103 362-482 24-149 (166)
376 cd01428 ADK Adenylate kinase ( 96.7 0.0013 2.8E-08 66.4 4.0 34 368-403 2-35 (194)
377 KOG3347 Predicted nucleotide k 96.7 0.0012 2.6E-08 65.1 3.6 32 366-397 8-39 (176)
378 PRK12339 2-phosphoglycerate ki 96.7 0.017 3.6E-07 59.9 12.1 30 365-394 3-32 (197)
379 cd00544 CobU Adenosylcobinamid 96.7 0.0058 1.3E-07 61.8 8.5 93 368-464 2-113 (169)
380 TIGR02788 VirB11 P-type DNA tr 96.7 0.0021 4.5E-08 70.8 5.8 72 361-434 140-228 (308)
381 PRK06696 uridine kinase; Valid 96.7 0.0021 4.6E-08 67.2 5.6 40 363-402 20-62 (223)
382 TIGR02655 circ_KaiC circadian 96.7 0.0091 2E-07 69.8 11.4 78 361-438 259-367 (484)
383 PHA02774 E1; Provisional 96.7 0.008 1.7E-07 70.9 10.7 30 366-395 435-464 (613)
384 KOG0479 DNA replication licens 96.7 0.0078 1.7E-07 70.1 10.3 150 333-500 302-481 (818)
385 PRK13894 conjugal transfer ATP 96.7 0.0018 3.9E-08 71.7 5.1 70 365-434 148-229 (319)
386 cd03246 ABCC_Protease_Secretio 96.7 0.008 1.7E-07 60.2 9.3 104 364-482 27-157 (173)
387 PRK04328 hypothetical protein; 96.7 0.013 2.9E-07 62.5 11.5 38 361-398 19-59 (249)
388 cd03243 ABC_MutS_homologs The 96.7 0.0067 1.4E-07 62.4 8.9 22 366-387 30-51 (202)
389 PRK06547 hypothetical protein; 96.7 0.0018 3.9E-08 65.5 4.5 35 363-397 13-47 (172)
390 PRK14530 adenylate kinase; Pro 96.7 0.0016 3.4E-08 67.7 4.2 35 367-403 5-39 (215)
391 PF00448 SRP54: SRP54-type pro 96.7 0.0034 7.4E-08 64.8 6.6 108 365-485 1-131 (196)
392 TIGR01313 therm_gnt_kin carboh 96.7 0.0014 3E-08 64.7 3.6 28 368-395 1-28 (163)
393 PRK13833 conjugal transfer pro 96.7 0.0022 4.8E-08 71.2 5.5 70 365-434 144-225 (323)
394 PTZ00088 adenylate kinase 1; P 96.7 0.0019 4.1E-08 68.4 4.8 38 364-403 5-42 (229)
395 PRK13851 type IV secretion sys 96.7 0.0019 4.1E-08 72.3 5.1 73 362-434 159-246 (344)
396 PRK09519 recA DNA recombinatio 96.7 0.0061 1.3E-07 74.5 9.6 118 361-478 56-194 (790)
397 COG0563 Adk Adenylate kinase a 96.7 0.0025 5.4E-08 65.0 5.3 35 367-403 2-36 (178)
398 PRK03731 aroL shikimate kinase 96.6 0.0019 4E-08 64.3 4.3 32 366-397 3-34 (171)
399 cd03280 ABC_MutS2 MutS2 homolo 96.6 0.0094 2E-07 61.3 9.5 21 366-386 29-49 (200)
400 PRK05057 aroK shikimate kinase 96.6 0.002 4.4E-08 64.9 4.5 34 365-398 4-37 (172)
401 cd01129 PulE-GspE PulE/GspE Th 96.6 0.0046 1E-07 66.7 7.4 94 329-435 57-160 (264)
402 TIGR02525 plasmid_TraJ plasmid 96.6 0.0041 8.9E-08 70.3 7.2 68 367-434 151-235 (372)
403 COG1121 ZnuC ABC-type Mn/Zn tr 96.6 0.0079 1.7E-07 64.5 8.8 57 411-482 144-200 (254)
404 PF01745 IPT: Isopentenyl tran 96.6 0.0029 6.3E-08 66.0 5.3 95 368-478 4-99 (233)
405 PF04665 Pox_A32: Poxvirus A32 96.6 0.026 5.6E-07 60.3 12.5 133 363-515 11-169 (241)
406 TIGR03499 FlhF flagellar biosy 96.6 0.0057 1.2E-07 66.6 7.8 37 364-400 193-234 (282)
407 PRK04301 radA DNA repair and r 96.6 0.008 1.7E-07 66.3 9.1 117 361-479 98-251 (317)
408 PRK10416 signal recognition pa 96.5 0.016 3.4E-07 64.4 11.1 36 363-398 112-150 (318)
409 TIGR02236 recomb_radA DNA repa 96.5 0.0065 1.4E-07 66.7 8.1 117 361-479 91-245 (310)
410 PF13521 AAA_28: AAA domain; P 96.5 0.0045 9.7E-08 61.2 6.0 35 368-403 2-36 (163)
411 cd03230 ABC_DR_subfamily_A Thi 96.5 0.0072 1.6E-07 60.6 7.5 105 363-482 24-156 (173)
412 PF05272 VirE: Virulence-assoc 96.5 0.0082 1.8E-07 62.2 8.0 124 341-501 34-168 (198)
413 COG2805 PilT Tfp pilus assembl 96.5 0.011 2.3E-07 64.6 9.0 115 364-507 123-252 (353)
414 cd03222 ABC_RNaseL_inhibitor T 96.5 0.0088 1.9E-07 60.9 8.0 71 364-434 24-99 (177)
415 PRK14528 adenylate kinase; Pro 96.5 0.0027 5.8E-08 64.8 4.2 31 366-396 2-32 (186)
416 TIGR01360 aden_kin_iso1 adenyl 96.5 0.0026 5.7E-08 63.7 4.0 34 367-402 5-38 (188)
417 cd03227 ABC_Class2 ABC-type Cl 96.5 0.01 2.2E-07 59.1 8.1 22 365-386 21-42 (162)
418 TIGR01526 nadR_NMN_Atrans nico 96.4 0.0068 1.5E-07 67.4 7.6 71 365-436 162-243 (325)
419 PRK05541 adenylylsulfate kinas 96.4 0.0085 1.8E-07 60.0 7.6 41 363-403 5-48 (176)
420 TIGR02238 recomb_DMC1 meiotic 96.4 0.01 2.2E-07 65.8 8.8 116 361-478 92-243 (313)
421 PHA02530 pseT polynucleotide k 96.4 0.0082 1.8E-07 65.1 8.1 39 365-404 2-40 (300)
422 PRK14527 adenylate kinase; Pro 96.4 0.0026 5.6E-08 64.8 3.8 38 363-402 4-41 (191)
423 PF08298 AAA_PrkA: PrkA AAA do 96.4 0.0061 1.3E-07 68.0 6.9 83 331-419 59-143 (358)
424 TIGR02655 circ_KaiC circadian 96.4 0.021 4.5E-07 66.8 11.8 39 361-399 17-59 (484)
425 cd03215 ABC_Carb_Monos_II This 96.4 0.01 2.3E-07 59.9 8.1 27 363-389 24-50 (182)
426 TIGR00959 ffh signal recogniti 96.4 0.034 7.3E-07 64.2 13.0 73 363-435 97-193 (428)
427 PRK02496 adk adenylate kinase; 96.4 0.0027 5.9E-08 64.0 3.8 30 367-396 3-32 (184)
428 cd03213 ABCG_EPDR ABCG transpo 96.4 0.015 3.3E-07 59.4 9.3 28 362-389 32-59 (194)
429 cd03115 SRP The signal recogni 96.4 0.018 3.8E-07 57.5 9.5 32 368-399 3-37 (173)
430 PRK13541 cytochrome c biogenes 96.4 0.024 5.2E-07 57.8 10.7 27 363-389 24-50 (195)
431 PLN02199 shikimate kinase 96.4 0.017 3.8E-07 63.3 10.0 33 365-397 102-134 (303)
432 COG1102 Cmk Cytidylate kinase 96.4 0.0027 5.9E-08 63.5 3.5 28 368-395 3-30 (179)
433 COG1936 Predicted nucleotide k 96.4 0.0055 1.2E-07 62.0 5.7 34 367-403 2-35 (180)
434 PRK05703 flhF flagellar biosyn 96.4 0.015 3.3E-07 67.0 10.0 36 365-400 221-261 (424)
435 PLN03187 meiotic recombination 96.4 0.0082 1.8E-07 67.2 7.6 116 361-478 122-273 (344)
436 PRK11174 cysteine/glutathione 96.4 0.0089 1.9E-07 71.2 8.4 28 362-389 373-400 (588)
437 PRK13808 adenylate kinase; Pro 96.4 0.011 2.3E-07 66.0 8.5 34 368-403 3-36 (333)
438 TIGR00767 rho transcription te 96.4 0.017 3.6E-07 65.8 10.1 25 366-390 169-193 (415)
439 TIGR01351 adk adenylate kinase 96.4 0.0031 6.6E-08 65.3 3.9 34 368-403 2-35 (210)
440 COG5245 DYN1 Dynein, heavy cha 96.3 0.012 2.7E-07 74.2 9.4 179 362-555 1491-1716(3164)
441 cd03232 ABC_PDR_domain2 The pl 96.3 0.019 4E-07 58.6 9.5 26 363-388 31-56 (192)
442 PF09848 DUF2075: Uncharacteri 96.3 0.011 2.3E-07 66.3 8.2 23 367-389 3-25 (352)
443 PTZ00035 Rad51 protein; Provis 96.3 0.012 2.7E-07 65.7 8.6 115 361-477 114-264 (337)
444 KOG0058 Peptide exporter, ABC 96.3 0.013 2.7E-07 70.3 9.0 28 361-388 490-517 (716)
445 PRK08099 bifunctional DNA-bind 96.3 0.0098 2.1E-07 67.9 7.9 41 363-403 217-257 (399)
446 PHA02624 large T antigen; Prov 96.3 0.0072 1.6E-07 71.6 6.8 120 363-502 429-561 (647)
447 PRK09302 circadian clock prote 96.3 0.031 6.7E-07 65.7 12.1 112 361-482 27-178 (509)
448 PRK00279 adk adenylate kinase; 96.3 0.0039 8.5E-08 64.7 4.1 29 368-396 3-31 (215)
449 COG4088 Predicted nucleotide k 96.2 0.0076 1.6E-07 62.6 5.9 22 368-389 4-25 (261)
450 TIGR02239 recomb_RAD51 DNA rep 96.2 0.011 2.4E-07 65.5 7.7 116 361-478 92-243 (316)
451 cd01125 repA Hexameric Replica 96.2 0.017 3.6E-07 61.0 8.7 21 368-388 4-24 (239)
452 TIGR01425 SRP54_euk signal rec 96.2 0.033 7.1E-07 64.1 11.6 72 363-434 98-192 (429)
453 cd03214 ABC_Iron-Siderophores_ 96.2 0.013 2.9E-07 59.1 7.5 107 363-483 23-160 (180)
454 COG4650 RtcR Sigma54-dependent 96.2 0.0029 6.4E-08 68.3 2.9 80 361-440 204-298 (531)
455 cd03282 ABC_MSH4_euk MutS4 hom 96.2 0.03 6.6E-07 58.2 10.4 23 365-387 29-51 (204)
456 PLN03186 DNA repair protein RA 96.2 0.013 2.9E-07 65.6 8.1 117 361-479 119-271 (342)
457 smart00487 DEXDc DEAD-like hel 96.2 0.026 5.6E-07 55.2 9.3 24 366-389 25-49 (201)
458 PRK12608 transcription termina 96.2 0.031 6.7E-07 63.2 10.9 23 367-389 135-157 (380)
459 cd03229 ABC_Class3 This class 96.2 0.011 2.3E-07 59.6 6.6 27 363-389 24-50 (178)
460 PRK01184 hypothetical protein; 96.2 0.0044 9.6E-08 62.4 3.9 29 367-396 3-31 (184)
461 PF13481 AAA_25: AAA domain; P 96.2 0.009 2E-07 60.2 6.1 73 367-439 34-156 (193)
462 cd02022 DPCK Dephospho-coenzym 96.1 0.019 4.2E-07 57.9 8.4 34 368-404 2-35 (179)
463 COG2804 PulE Type II secretory 96.1 0.011 2.4E-07 68.4 7.2 95 327-435 233-338 (500)
464 PRK04182 cytidylate kinase; Pr 96.1 0.0051 1.1E-07 61.0 4.0 29 367-395 2-30 (180)
465 PF13238 AAA_18: AAA domain; P 96.1 0.0041 9E-08 57.8 3.0 22 368-389 1-22 (129)
466 PF08423 Rad51: Rad51; InterP 96.1 0.0097 2.1E-07 64.0 6.2 116 368-485 41-192 (256)
467 PF06414 Zeta_toxin: Zeta toxi 96.1 0.014 3E-07 60.0 7.1 42 363-404 13-55 (199)
468 TIGR02524 dot_icm_DotB Dot/Icm 96.1 0.022 4.8E-07 64.2 9.3 69 366-434 135-222 (358)
469 PF00406 ADK: Adenylate kinase 96.1 0.0041 8.9E-08 60.8 3.0 35 370-406 1-35 (151)
470 PRK13539 cytochrome c biogenes 96.1 0.038 8.2E-07 57.0 10.3 27 363-389 26-52 (207)
471 PLN02674 adenylate kinase 96.1 0.0076 1.6E-07 64.5 5.2 40 363-404 29-68 (244)
472 TIGR00064 ftsY signal recognit 96.1 0.12 2.5E-06 56.2 14.4 38 362-399 69-109 (272)
473 PRK14730 coaE dephospho-CoA ki 96.1 0.037 8.1E-07 57.0 10.1 36 367-404 3-38 (195)
474 TIGR02868 CydC thiol reductant 96.1 0.02 4.3E-07 67.3 9.2 28 362-389 358-385 (529)
475 TIGR02533 type_II_gspE general 96.1 0.013 2.8E-07 68.6 7.5 95 327-435 217-322 (486)
476 TIGR03797 NHPM_micro_ABC2 NHPM 96.0 0.016 3.4E-07 70.5 8.3 28 362-389 476-503 (686)
477 PRK00889 adenylylsulfate kinas 96.0 0.025 5.3E-07 56.6 8.4 40 364-403 3-45 (175)
478 COG2874 FlaH Predicted ATPases 96.0 0.033 7.1E-07 58.3 9.3 125 353-490 14-176 (235)
479 COG2884 FtsE Predicted ATPase 96.0 0.037 8E-07 57.1 9.5 57 413-484 144-200 (223)
480 PRK11176 lipid transporter ATP 96.0 0.018 3.9E-07 68.4 8.6 28 362-389 366-393 (582)
481 COG1136 SalX ABC-type antimicr 96.0 0.028 6.1E-07 59.4 8.9 68 413-501 149-216 (226)
482 TIGR03375 type_I_sec_LssB type 96.0 0.016 3.5E-07 70.5 8.3 28 362-389 488-515 (694)
483 TIGR02173 cyt_kin_arch cytidyl 96.0 0.0063 1.4E-07 60.0 3.9 29 368-396 3-31 (171)
484 TIGR03796 NHPM_micro_ABC1 NHPM 96.0 0.014 2.9E-07 71.3 7.6 28 362-389 502-529 (710)
485 TIGR00152 dephospho-CoA kinase 96.0 0.033 7.2E-07 56.5 9.2 36 368-405 2-37 (188)
486 TIGR01448 recD_rel helicase, p 96.0 0.025 5.5E-07 69.3 9.7 97 367-481 340-455 (720)
487 TIGR00150 HI0065_YjeE ATPase, 96.0 0.011 2.3E-07 57.6 5.2 29 364-392 21-49 (133)
488 PRK06581 DNA polymerase III su 95.9 0.18 3.8E-06 54.0 14.6 147 364-534 14-175 (263)
489 COG1126 GlnQ ABC-type polar am 95.9 0.034 7.3E-07 58.4 9.0 23 365-387 28-50 (240)
490 PF13245 AAA_19: Part of AAA d 95.9 0.01 2.2E-07 52.2 4.5 31 368-398 13-50 (76)
491 cd03287 ABC_MSH3_euk MutS3 hom 95.9 0.037 7.9E-07 58.4 9.5 24 364-387 30-53 (222)
492 PF02562 PhoH: PhoH-like prote 95.9 0.0063 1.4E-07 63.4 3.6 23 367-389 21-43 (205)
493 PF05970 PIF1: PIF1-like helic 95.9 0.035 7.6E-07 62.6 9.9 53 338-399 4-59 (364)
494 TIGR03819 heli_sec_ATPase heli 95.9 0.0088 1.9E-07 66.9 5.0 70 365-434 178-263 (340)
495 PRK08233 hypothetical protein; 95.9 0.0082 1.8E-07 59.7 4.4 33 366-398 4-37 (182)
496 cd02019 NK Nucleoside/nucleoti 95.9 0.0088 1.9E-07 51.2 3.8 22 368-389 2-23 (69)
497 COG3842 PotA ABC-type spermidi 95.9 0.0082 1.8E-07 67.3 4.6 25 363-387 27-53 (352)
498 PF12780 AAA_8: P-loop contain 95.9 0.026 5.6E-07 61.2 8.3 170 333-518 9-212 (268)
499 TIGR01069 mutS2 MutS2 family p 95.9 0.088 1.9E-06 65.0 13.8 23 366-388 323-345 (771)
500 cd03217 ABC_FeS_Assembly ABC-t 95.8 0.03 6.5E-07 57.5 8.3 27 362-388 23-49 (200)
No 1
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-106 Score=925.43 Aligned_cols=568 Identities=48% Similarity=0.687 Sum_probs=486.7
Q ss_pred ceechHHHHHHHHcCCccEEEEeCc--EEEEEEecCCcccchhhhhhhchhhhhhhhccCCccceEEEecCCCCCcchHH
Q 003476 181 VSVPYSDFLSKINSNQVAKVEVDGV--HIMFKLKNDGSIQESEVITNKFQESESLLKSVTPTKRIVYTTTRPSDIKTPYE 258 (816)
Q Consensus 181 ~~~~ys~f~~~~~~~~v~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~ 258 (816)
..++|++|++.+..++|++|.+++. .+.++.+++.. ...|.+....|.+ ...
T Consensus 23 ~~~~~~~f~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~-------------------------~~~~~~~~~~~~~-~~~ 76 (596)
T COG0465 23 KQVTYSQFIQLVSGGKVSSVSIKGDSKTVNLKLKDGSK-------------------------NTVYLPKGVNDPN-LVS 76 (596)
T ss_pred ccccHHHHHHHHhcCCceEEEEcCCceEEEEEecCCcc-------------------------eEEeecCCcccHH-HHH
Confidence 4699999999999999999999874 45555555411 1223333233433 445
Q ss_pred HHHhCCceeccCCCCCcchHHHHHHHHHHHHHHHHHHhhccccccc-cccccccccCCCCCCCccccCCCccccccccCC
Q 003476 259 KMLENQVEFGSPDKRSGGFLNSALIALFYVAVLAGLLHRFPVSFSQ-TAGQVGHRKTRGPGGAKVSEQGDTITFADVAGV 337 (816)
Q Consensus 259 ~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vtf~DV~G~ 337 (816)
.+..+++.+....+...++|..++.+++|++++++++..+.....+ ..|.. ...++++......+....++|.||+|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~il~~~~~~~~~~r~~~~g~g~~-~~~~gkskak~~~~~~~~v~F~DVAG~ 155 (596)
T COG0465 77 FLDSNNITESGFIPEDNSLLASLLSTWLPFILLIGLGWFFFRRQAQGGGGGG-AFSFGKSKAKLYLEDQVKVTFADVAGV 155 (596)
T ss_pred HHHhcCCcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc-ccCCChHHHHHhcccccCcChhhhcCc
Confidence 6677776554433344445566666666666655533222111122 22211 222333332333455678999999999
Q ss_pred hHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHHhhcchHHHHHHH
Q 003476 338 DEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLF 417 (816)
Q Consensus 338 ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~~vG~~~~~vr~lF 417 (816)
+++|++|.|+|+||++|.+|..+|++.|+|+||+||||||||+||||+|+|+++||+++|+|+|+++|+|.+++++|++|
T Consensus 156 dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF 235 (596)
T COG0465 156 DEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLF 235 (596)
T ss_pred HHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccce
Q 003476 418 ARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRV 497 (816)
Q Consensus 418 ~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~ 497 (816)
.+|++++||||||||||++++.|+.+ .++++++++|++||||.+||||..+.+|+||++||+||.|||||+|||||||+
T Consensus 236 ~qAkk~aP~IIFIDEiDAvGr~Rg~g-~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRq 314 (596)
T COG0465 236 EQAKKNAPCIIFIDEIDAVGRQRGAG-LGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQ 314 (596)
T ss_pred HHhhccCCCeEEEehhhhcccccCCC-CCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCccee
Confidence 99999999999999999999999876 56889999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHHc
Q 003476 498 VMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIA 577 (816)
Q Consensus 498 I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~~~~It~~d~~~Al~r~i~ 577 (816)
|.++.||..+|++|++.|++++ ++++++|+..+|+.|+||+|+||+|++|+|++.|.|+++..|++.||.+|++++++
T Consensus 315 I~V~~PDi~gRe~IlkvH~~~~--~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~ 392 (596)
T COG0465 315 ILVELPDIKGREQILKVHAKNK--PLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIA 392 (596)
T ss_pred eecCCcchhhHHHHHHHHhhcC--CCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhc
Confidence 9999999999999999999775 67899999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhccchhhHHHhhhcccceeehhhhhhCCCCCccceeeeccCCCccceeEEecCCcccchhHHHHHHHHHHHh
Q 003476 578 GIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTL 657 (816)
Q Consensus 578 g~e~k~~~l~~~ek~~iA~HEaGHAvv~~~l~~~l~~~~~v~kvsi~pr~g~alG~~~~~~~~~~~~~~~~~l~~~i~~l 657 (816)
|.++++..+++.+++.+||||+|||+++ .++|+.++|+|+||+||+ .++|||+..|.+|++++++++++++|+++
T Consensus 393 G~erks~vise~ek~~~AYhEaghalv~----~~l~~~d~v~KvtIiPrG-~alG~t~~~Pe~d~~l~sk~~l~~~i~~~ 467 (596)
T COG0465 393 GPERKSRVISEAEKKITAYHEAGHALVG----LLLPDADPVHKVTIIPRG-RALGYTLFLPEEDKYLMSKEELLDRIDVL 467 (596)
T ss_pred CcCcCCcccChhhhcchHHHHHHHHHHH----HhCCCCcccceeeeccCc-hhhcchhcCCccccccccHHHHHHHHHHH
Confidence 9999999999999999999999999997 589999999999999995 89999999999999999999999999999
Q ss_pred hhHHHHHHHHcCC-CcCCChhhHHHHHHHHHHHHHHHhcccCCCCcceecccCCCCCCCCCCCCCCCcchhHHHHHHHHH
Q 003476 658 LGGRAAEEVAYSG-RISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDLVQRE 736 (816)
Q Consensus 658 LgGraAEel~f~~-~~stGa~~Dl~~AT~lA~~mv~~~Gm~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e 736 (816)
||||||||++| + ++||||+|||++||++|+.||++|||++.+|++.+.......+........+ +++++..||+|
T Consensus 468 lgGRaAEel~~-g~e~ttGa~~D~~~at~~ar~mVt~~Gms~~lG~v~~~~~~~~flg~~~~~~~~---Se~ta~~ID~e 543 (596)
T COG0465 468 LGGRAAEELIF-GYEITTGASNDLEKATDLARAMVTEYGMSAKLGPVAYEQVEGVFLGRYQKAKNY---SEETAQEIDRE 543 (596)
T ss_pred hCCcHhhhhhh-cccccccchhhHHHHHHHHHHhhhhcCcchhhCceehhhcccccccccccccCc---cHHHHHHHHHH
Confidence 99999999999 6 9999999999999999999999999999999999987543111111111223 45678899999
Q ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhcccCHHHHHHHHcCcCCC
Q 003476 737 VKALLQSALEVALCVVRANPDVLEGLGACLEEKEKVEGEELQEWLGMVVAP 787 (816)
Q Consensus 737 v~~il~~a~~~A~~iL~~nr~~L~~la~~LlekEtl~g~e~~~il~~~~~p 787 (816)
|++++++||++|++||.+|++.++.+++.|+|+|||+++++++|+.....|
T Consensus 544 vk~ii~~~y~~a~~il~~~~~~l~~~~~~Lle~Eti~~~~i~~i~~~~~~~ 594 (596)
T COG0465 544 VKDIIDEAYERAKELLNENKDALETLAEMLLEKETIDAEEIKDILAGRKLP 594 (596)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCHHHHHHHHhcccCC
Confidence 999999999999999999999999999999999999999999999876444
No 2
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-105 Score=875.06 Aligned_cols=439 Identities=47% Similarity=0.711 Sum_probs=415.1
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 003476 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (816)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~ 403 (816)
+....++|+||-|+|++|++|+|+|+||++|++|.++|.+.|+||||+||||||||+||||+|+|+++|||++++++|-+
T Consensus 296 ~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdE 375 (752)
T KOG0734|consen 296 EQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDE 375 (752)
T ss_pred hhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhh
Confidence 44558999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCC
Q 003476 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (816)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~ 483 (816)
+|+|+++++||++|..|++.+||||||||||+++.+|... ...+.++++||||.+||||..+.+||||+|||.|+.
T Consensus 376 m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~----~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~ 451 (752)
T KOG0734|consen 376 MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPS----DQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEA 451 (752)
T ss_pred hhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCcc----HHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhh
Confidence 9999999999999999999999999999999999998653 223889999999999999999999999999999999
Q ss_pred CCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccc
Q 003476 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVV 563 (816)
Q Consensus 484 LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~~~~I 563 (816)
||+||.||||||++|.|+.||..+|.+||+.|+.+ ++++.++|+..||+-|.||||+||+|+||.|++.|+.++...|
T Consensus 452 LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~k--i~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~V 529 (752)
T KOG0734|consen 452 LDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSK--IPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMV 529 (752)
T ss_pred hhHHhcCCCccceeEecCCCCcccHHHHHHHHHhc--CCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccc
Confidence 99999999999999999999999999999999977 5788999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHcchhhhhhhhccchhhHHHhhhcccceeehhhhhhCCCCCccceeeeccCCCccceeEEecCCcccc
Q 003476 564 EKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRY 643 (816)
Q Consensus 564 t~~d~~~Al~r~i~g~e~k~~~l~~~ek~~iA~HEaGHAvv~~~l~~~l~~~~~v~kvsi~pr~g~alG~~~~~~~~~~~ 643 (816)
+|.|++.|-+|+++|.++++..++++.++++||||+|||+|+ .+..++.|++|+||.|| |.++|.+.+.|+.|++
T Consensus 530 tM~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~GHAivA----~yTk~A~PlhKaTImPR-G~sLG~t~~LPe~D~~ 604 (752)
T KOG0734|consen 530 TMKHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGGHAIVA----LYTKGAMPLHKATIMPR-GPSLGHTSQLPEKDRY 604 (752)
T ss_pred cHHHHhhhhhheeecccccccccChhhhhhhhhhccCceEEE----eecCCCccccceeeccC-CccccceeecCccchh
Confidence 999999999999999999999999999999999999999997 47889999999999999 7899999999999999
Q ss_pred hhHHHHHHHHHHHhhhHHHHHHHHcC-CCcCCChhhHHHHHHHHHHHHHHHhcccCCCCcceecccCCCCCCCCCCCCCC
Q 003476 644 LLFIDELCGRLVTLLGGRAAEEVAYS-GRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPW 722 (816)
Q Consensus 644 ~~~~~~l~~~i~~lLgGraAEel~f~-~~~stGa~~Dl~~AT~lA~~mv~~~Gm~~~lg~~~~~~~~~~~~~~~~~~~~~ 722 (816)
..||.+|++++.+|||||+|||++|| +.+|+||++||++||++|++||++||||+++|++++....+.
T Consensus 605 ~~Tk~q~LA~lDV~MGGRvAEELIfG~D~iTsGAssDl~qAT~lA~~MVt~fGMSd~vG~v~~~~~~~~----------- 673 (752)
T KOG0734|consen 605 SITKAQLLARLDVCMGGRVAEELIFGTDKITSGASSDLDQATKLARRMVTKFGMSDKVGPVTLSAEDNS----------- 673 (752)
T ss_pred hHHHHHHHHHHHHhhcchHHHHHhccCCcccccccchHHHHHHHHHHHHHHcCccccccceeeeccCCC-----------
Confidence 99999999999999999999999997 579999999999999999999999999999999998653220
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhcccCHHHHHHHHcCc
Q 003476 723 GRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGLGACLEEKEKVEGEELQEWLGMV 784 (816)
Q Consensus 723 ~~~~~~~~~~i~~ev~~il~~a~~~A~~iL~~nr~~L~~la~~LlekEtl~g~e~~~il~~~ 784 (816)
.....++...||.||+++|+++|+||+.||+.|...|++||++|+|.|||+++||++++.+.
T Consensus 674 ~s~~~~t~~lidaEi~~lL~~sYeRak~iL~~h~kEl~~LA~ALleYETL~A~eik~vl~g~ 735 (752)
T KOG0734|consen 674 SSLSPRTQELIDAEIKRLLRDSYERAKSILKTHKKELHALAEALLEYETLDAKEIKRVLKGK 735 (752)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhcc
Confidence 11123556789999999999999999999999999999999999999999999999999754
No 3
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-98 Score=871.23 Aligned_cols=451 Identities=54% Similarity=0.794 Sum_probs=420.4
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 003476 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (816)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~ 403 (816)
+...+|+|+||+|++++|++|.|+|+||+||++|.++|+++|+|+||+||||||||+||||+|+|+|+||+++++++|++
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE 382 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE 382 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH
Confidence 44566999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCC
Q 003476 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (816)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~ 483 (816)
+++|.+++++|++|..|+.++||||||||||++++.|++....+.++++++++||||.+||||....+|||+|+||++|.
T Consensus 383 ~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ 462 (774)
T KOG0731|consen 383 MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDI 462 (774)
T ss_pred HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccc
Confidence 99999999999999999999999999999999999997545567899999999999999999999999999999999999
Q ss_pred CCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccc
Q 003476 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVV 563 (816)
Q Consensus 484 LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~~~~I 563 (816)
||+||+|||||||+|.++.|+..+|.+|+++|+++..+. .+++++..+|.+|+||+|+||+|+||+|++.|.|++...|
T Consensus 463 ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i 541 (774)
T KOG0731|consen 463 LDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREI 541 (774)
T ss_pred cCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCcc
Confidence 999999999999999999999999999999999987654 5788999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHcchhhhhhhhccchhhHHHhhhcccceeehhhhhhCCCCCccceeeeccCCCccceeEEecCCcccc
Q 003476 564 EKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRY 643 (816)
Q Consensus 564 t~~d~~~Al~r~i~g~e~k~~~l~~~ek~~iA~HEaGHAvv~~~l~~~l~~~~~v~kvsi~pr~g~alG~~~~~~~~~~~ 643 (816)
+..||+.|++|++.|++++...++.++++.+||||||||++++ ++++.+++.+++|+| |+++||+++.|.++ +
T Consensus 542 ~~~~~~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eagha~~g~----~l~~~dpl~kvsIiP--GqalG~a~~~P~~~-~ 614 (774)
T KOG0731|consen 542 GTKDLEYAIERVIAGMEKKSRVLSLEEKKTVAYHEAGHAVVGW----LLEHADPLLKVSIIP--GQALGYAQYLPTDD-Y 614 (774)
T ss_pred chhhHHHHHHHHhccccccchhcCHhhhhhhhhhhccchhhhc----cccccCcceeEEecc--CCccceEEECCccc-c
Confidence 9999999999999999999999999999999999999999984 679999999999999 45999999999877 9
Q ss_pred hhHHHHHHHHHHHhhhHHHHHHHHcCCCcCCChhhHHHHHHHHHHHHHHHhcccCCCCcceecccCCCCCCCCCCCCCCC
Q 003476 644 LLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWG 723 (816)
Q Consensus 644 ~~~~~~l~~~i~~lLgGraAEel~f~~~~stGa~~Dl~~AT~lA~~mv~~~Gm~~~lg~~~~~~~~~~~~~~~~~~~~~~ 723 (816)
++++++|+++||++||||||||++||+++||||++||++||++|++||++|||++++|++++.....+ + ..++.
T Consensus 615 l~sk~ql~~rm~m~LGGRaAEev~fg~~iTtga~ddl~kvT~~A~~~V~~~Gms~kig~~~~~~~~~~--~----~~~~~ 688 (774)
T KOG0731|consen 615 LLSKEQLFDRMVMALGGRAAEEVVFGSEITTGAQDDLEKVTKIARAMVASFGMSEKIGPISFQMLLPG--D----ESFRK 688 (774)
T ss_pred cccHHHHHHHHHHHhCcchhhheecCCccCchhhccHHHHHHHHHHHHHHcCcccccCceeccCcccc--c----ccccC
Confidence 99999999999999999999999997789999999999999999999999999999999999432211 1 12222
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhcccCHHHHHHHHcCcCCCc
Q 003476 724 RDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGLGACLEEKEKVEGEELQEWLGMVVAPI 788 (816)
Q Consensus 724 ~~~~~~~~~i~~ev~~il~~a~~~A~~iL~~nr~~L~~la~~LlekEtl~g~e~~~il~~~~~p~ 788 (816)
.....+++.||.||++|+..||++|.++|++|++.|+.||+.|+|||+|+++|+.+++...+...
T Consensus 689 p~s~~~~~~Id~ev~~lv~~ay~~~~~ll~~n~~~l~~ia~~LLeke~l~~ee~~~ll~~~~~~~ 753 (774)
T KOG0731|consen 689 PYSEKTAQLIDTEVRRLVQKAYERTKELLRTNRDKLDKIAEVLLEKEVLTGEEIIALLGERPPGM 753 (774)
T ss_pred ccchhHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccHHHHHHHhccCCCcc
Confidence 33345678899999999999999999999999999999999999999999999999998765444
No 4
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=7.7e-92 Score=822.15 Aligned_cols=573 Identities=40% Similarity=0.619 Sum_probs=470.7
Q ss_pred CccceechHHHHHHHHcCCccEEEEeCcEEEEEEecCCcccchhhhhhhchhhhhhhhccCCccceEEEecCCCCCcchH
Q 003476 178 TTFVSVPYSDFLSKINSNQVAKVEVDGVHIMFKLKNDGSIQESEVITNKFQESESLLKSVTPTKRIVYTTTRPSDIKTPY 257 (816)
Q Consensus 178 ~~~~~~~ys~f~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~ 257 (816)
....+++||+|++++++|+|++|.+.++.+........... ......|.+..|...+.++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~ 106 (638)
T CHL00176 47 KASSRMTYGRFLEYLDMGWIKKVDLYDNGRTAIVEASSPEL--------------------GNRPQRIRVELPVGASELI 106 (638)
T ss_pred CCCceecHHHHHHHHHcCCeeEEEEecCceEEEEeeccccC--------------------CCcceeEEEeCCCCCHHHH
Confidence 34557999999999999999999998765443221110000 0001124454553223457
Q ss_pred HHHHhCCceeccCCCCCcchHHHHH-HHHHHHHHHHHHHhhccccc--cccccccccccCCCCCCCccccCCCccccccc
Q 003476 258 EKMLENQVEFGSPDKRSGGFLNSAL-IALFYVAVLAGLLHRFPVSF--SQTAGQVGHRKTRGPGGAKVSEQGDTITFADV 334 (816)
Q Consensus 258 ~~l~~~~v~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vtf~DV 334 (816)
..|.+++|++...+.....+|...+ .+++|++++.++++.+.... ....++. ....+++...........++|+||
T Consensus 107 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~dv 185 (638)
T CHL00176 107 QKLKEANIDFDAHPPVLKSNIVTILSNLLLPLILIGVLWFFFQRSSNFKGGPGQN-LMNFGKSKARFQMEADTGITFRDI 185 (638)
T ss_pred HHHHHcCCcEEecCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc-ccccchhHHHhhcccCCCCCHHhc
Confidence 7889999999765544444444434 44456665555443221111 1111110 112222221122344567999999
Q ss_pred cCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHHhhcchHHHH
Q 003476 335 AGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVR 414 (816)
Q Consensus 335 ~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~~vG~~~~~vr 414 (816)
+|++++|+++.++++++++++.|..+|...|+|+||+||||||||++|+++|+++++||+.+++++|.+.++|.+..+++
T Consensus 186 ~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr 265 (638)
T CHL00176 186 AGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVR 265 (638)
T ss_pred cChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcc
Q 003476 415 DLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRF 494 (816)
Q Consensus 415 ~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRF 494 (816)
++|..|+..+||||||||||.++..++... .+.+++.++++++||.+||++..+.+|+||+|||+++.+|++++|||||
T Consensus 266 ~lF~~A~~~~P~ILfIDEID~l~~~r~~~~-~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRF 344 (638)
T CHL00176 266 DLFKKAKENSPCIVFIDEIDAVGRQRGAGI-GGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRF 344 (638)
T ss_pred HHHHHHhcCCCcEEEEecchhhhhcccCCC-CCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccC
Confidence 999999999999999999999998775432 3467888999999999999999889999999999999999999999999
Q ss_pred cceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHH
Q 003476 495 DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (816)
Q Consensus 495 dr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~~~~It~~d~~~Al~r 574 (816)
|++|.|++|+.++|.+||+.|+++. ++..++++..+|..|.|||++||+++|++|++.|.+++...|+.+||.+|+++
T Consensus 345 d~~I~v~lPd~~~R~~IL~~~l~~~--~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~r 422 (638)
T CHL00176 345 DRQITVSLPDREGRLDILKVHARNK--KLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDR 422 (638)
T ss_pred ceEEEECCCCHHHHHHHHHHHHhhc--ccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Confidence 9999999999999999999999874 45678899999999999999999999999999999999999999999999999
Q ss_pred HHcchhhhhhhhccchhhHHHhhhcccceeehhhhhhCCCCCccceeeeccCCCccceeEEecCCcccchhHHHHHHHHH
Q 003476 575 SIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRL 654 (816)
Q Consensus 575 ~i~g~e~k~~~l~~~ek~~iA~HEaGHAvv~~~l~~~l~~~~~v~kvsi~pr~g~alG~~~~~~~~~~~~~~~~~l~~~i 654 (816)
++.|.+++. ..++.+++++||||||||+|+ +++++.++|++|||+|| |+++||++..|.++++++++.+|+++|
T Consensus 423 v~~g~~~~~-~~~~~~~~~vA~hEaGhA~v~----~~l~~~~~v~kvtI~pr-g~~~G~~~~~p~~~~~~~t~~~l~~~i 496 (638)
T CHL00176 423 VIAGLEGTP-LEDSKNKRLIAYHEVGHAIVG----TLLPNHDPVQKVTLIPR-GQAKGLTWFTPEEDQSLVSRSQILARI 496 (638)
T ss_pred HHhhhccCc-cccHHHHHHHHHHhhhhHHHH----hhccCCCceEEEEEeec-CCCCCceEecCCcccccccHHHHHHHH
Confidence 999988764 557788999999999999997 47888899999999999 579999999999999999999999999
Q ss_pred HHhhhHHHHHHHHcC-CCcCCChhhHHHHHHHHHHHHHHHhcccCCCCcceecccCC-C-CCCCC-CCCCCCCcchhHHH
Q 003476 655 VTLLGGRAAEEVAYS-GRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSS-G-GIDES-GGGVPWGRDQGQLV 730 (816)
Q Consensus 655 ~~lLgGraAEel~f~-~~~stGa~~Dl~~AT~lA~~mv~~~Gm~~~lg~~~~~~~~~-~-~~~~~-~~~~~~~~~~~~~~ 730 (816)
+++|||||||+++|| +++|+||+|||++||+||+.||++||||+ +|++++..... . .+... .....+ .+.++
T Consensus 497 ~~~LgGraAE~~~fg~~~~~~Ga~~Dl~~AT~iA~~mv~~~Gm~~-~g~~~~~~~~~~~~~~~~~~~~~~~~---s~~~~ 572 (638)
T CHL00176 497 VGALGGRAAEEVVFGSTEVTTGASNDLQQVTNLARQMVTRFGMSS-IGPISLESNNSTDPFLGRFMQRNSEY---SEEIA 572 (638)
T ss_pred HHHhhhHHHHHHhcCCCCcCCCchhHHHHHHHHHHHHHHHhCCCc-CCceeecCCCCcccccccccccccCc---CHHHH
Confidence 999999999999996 37999999999999999999999999995 99999865332 1 11000 001122 34667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhcccCHHHHHHHHcCc
Q 003476 731 DLVQREVKALLQSALEVALCVVRANPDVLEGLGACLEEKEKVEGEELQEWLGMV 784 (816)
Q Consensus 731 ~~i~~ev~~il~~a~~~A~~iL~~nr~~L~~la~~LlekEtl~g~e~~~il~~~ 784 (816)
..||+||+++|++||++|++||++|++.|++||++|+|+|||+++||++|++..
T Consensus 573 ~~iD~ev~~~l~~~~~~a~~iL~~~~~~l~~la~~Lle~Etl~~~ei~~il~~~ 626 (638)
T CHL00176 573 DKIDMEVRSILHTCYQYAYQILKDNRVLIDLLVELLLQKETIDGDEFREIVNSY 626 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCHHHHHHHHhhc
Confidence 899999999999999999999999999999999999999999999999999763
No 5
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=7.1e-88 Score=794.45 Aligned_cols=564 Identities=43% Similarity=0.665 Sum_probs=475.1
Q ss_pred ceechHHHHHHHHcCCccEEEEeCcEEEEEEecCCcccchhhhhhhchhhhhhhhccCCccceEEEecCCCCCcchHHHH
Q 003476 181 VSVPYSDFLSKINSNQVAKVEVDGVHIMFKLKNDGSIQESEVITNKFQESESLLKSVTPTKRIVYTTTRPSDIKTPYEKM 260 (816)
Q Consensus 181 ~~~~ys~f~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l 260 (816)
..++|+.|.+.+.++.+.++.+....|.+..+++. .|.+..|.+....+..+
T Consensus 30 ~~~~~~~~~~~~~~~~v~Ev~~~~~tIK~~~~e~~----------------------------~~~~~~~~~~~~l~~~l 81 (644)
T PRK10733 30 RKVDYSTFLQEVNQDQVREARINGREINVTKKDSN----------------------------RYTTYIPVNDPKLLDNL 81 (644)
T ss_pred ccCCHHHHHHHHHcCCeEEEEEeCCEEEEEEcCCc----------------------------eEEEeCCCCCHHHHHHH
Confidence 36999999999999999999998888877655431 23444443223456778
Q ss_pred HhCCceeccCCCCCcchHHHHHHHHHHHHHHHHHHhhccccccccccccccccCCCCCCCccccCCCccccccccCChHH
Q 003476 261 LENQVEFGSPDKRSGGFLNSALIALFYVAVLAGLLHRFPVSFSQTAGQVGHRKTRGPGGAKVSEQGDTITFADVAGVDEA 340 (816)
Q Consensus 261 ~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtf~DV~G~ee~ 340 (816)
.++++.+...+.....++..++..+++++++++++..+...++.+.+ .....+.........+.....+|+|+.|.+.+
T Consensus 82 ~~~~v~~~~~~~~~~~~~~~i~~~~~~~il~ig~~~v~~g~mt~G~~-~~l~af~~~~~~~~~~~~~~~~~~di~g~~~~ 160 (644)
T PRK10733 82 LTKNVKVVGEPPEEPSLLASIFISWFPMLLLIGVWIFFMRQMQGGGG-KGAMSFGKSKARMLTEDQIKTTFADVAGCDEA 160 (644)
T ss_pred HHcCCeEEecCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-ceeEEeccccccccCchhhhCcHHHHcCHHHH
Confidence 88999887655444445555555555555555444322111111111 00111222222222334557889999999999
Q ss_pred HHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHHhhcchHHHHHHHHHH
Q 003476 341 KEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARA 420 (816)
Q Consensus 341 K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~~vG~~~~~vr~lF~~A 420 (816)
++++.+++++++++..|..++...|+|+||+||||||||++|+++|+++++||+.++++++.+.+++.++.+++++|..|
T Consensus 161 ~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a 240 (644)
T PRK10733 161 KEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQA 240 (644)
T ss_pred HHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEe
Q 003476 421 KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMV 500 (816)
Q Consensus 421 ~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v 500 (816)
+..+||||||||||+++..++... .+.+++.++++|+||.+||++..+.+++||+|||+|+.||++++||||||++|.|
T Consensus 241 ~~~~P~IifIDEiD~l~~~r~~~~-~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v 319 (644)
T PRK10733 241 KKAAPCIIFIDEIDAVGRQRGAGL-GGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVV 319 (644)
T ss_pred HhcCCcEEEehhHhhhhhccCCCC-CCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEc
Confidence 999999999999999998876543 3456788999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHHcchh
Q 003476 501 ETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGIE 580 (816)
Q Consensus 501 ~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~~~~It~~d~~~Al~r~i~g~e 580 (816)
++|+.++|.+||+.|+++. ++..++++..+|+.|.||||+||.++|++|+..|.+.++..|++.||.+|++++..|.+
T Consensus 320 ~~Pd~~~R~~Il~~~~~~~--~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v~~g~~ 397 (644)
T PRK10733 320 GLPDVRGREQILKVHMRRV--PLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAE 397 (644)
T ss_pred CCCCHHHHHHHHHHHhhcC--CCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHhcccc
Confidence 9999999999999999764 67788999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhhccchhhHHHhhhcccceeehhhhhhCCCCCccceeeeccCCCccceeEEecCCcccchhHHHHHHHHHHHhhhH
Q 003476 581 KKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGG 660 (816)
Q Consensus 581 ~k~~~l~~~ek~~iA~HEaGHAvv~~~l~~~l~~~~~v~kvsi~pr~g~alG~~~~~~~~~~~~~~~~~l~~~i~~lLgG 660 (816)
++...+++++++.+||||+|||+|+ +++++.+++++|+|+|| |.++||+++.|.++++.+++.+|+++|+++|||
T Consensus 398 ~~~~~~~~~~~~~~a~he~gha~~~----~~~~~~~~~~~v~i~pr-g~~~g~~~~~~~~~~~~~~~~~l~~~i~~~lgG 472 (644)
T PRK10733 398 RRSMVMTEAQKESTAYHEAGHAIIG----RLVPEHDPVHKVTIIPR-GRALGVTFFLPEGDAISASRQKLESQISTLYGG 472 (644)
T ss_pred cccccccHHHHHHHHHHHHHHHHHH----HHccCCCceeEEEEecc-CCCcceeEECCCcccccccHHHHHHHHHHHHhh
Confidence 8888888899999999999999997 47888899999999999 569999999998898889999999999999999
Q ss_pred HHHHHHHcC-CCcCCChhhHHHHHHHHHHHHHHHhcccCCCCcceecccCCCC-CCCC-CCCCCCCcchhHHHHHHHHHH
Q 003476 661 RAAEEVAYS-GRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGG-IDES-GGGVPWGRDQGQLVDLVQREV 737 (816)
Q Consensus 661 raAEel~f~-~~~stGa~~Dl~~AT~lA~~mv~~~Gm~~~lg~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~i~~ev 737 (816)
||||+++|| +++||||+|||++||+||+.||++||||+++|++.+....... +... .....+ .++++..||+||
T Consensus 473 raAE~~~~g~~~~ttGa~~Dl~~AT~lA~~mv~~~Gms~~lg~~~~~~~~~~~~lg~~~~~~~~~---s~~~~~~id~ev 549 (644)
T PRK10733 473 RLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVAKAKHM---SDETARIIDQEV 549 (644)
T ss_pred HHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhCCCccccchhhccccccccccccccccccc---CHHHHHHHHHHH
Confidence 999999996 4799999999999999999999999999999999986532211 1100 001122 345678899999
Q ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhcccCHHHHHHHHcCc
Q 003476 738 KALLQSALEVALCVVRANPDVLEGLGACLEEKEKVEGEELQEWLGMV 784 (816)
Q Consensus 738 ~~il~~a~~~A~~iL~~nr~~L~~la~~LlekEtl~g~e~~~il~~~ 784 (816)
++||++||++|++||++|++.|++||++|+|+|||+++||++|+...
T Consensus 550 ~~il~~~~~~a~~iL~~~~~~l~~la~~Lle~etl~~~ei~~i~~~~ 596 (644)
T PRK10733 550 KALIERNYNRARQLLTDNMDILHAMKDALMKYETIDAPQIDDLMARR 596 (644)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhceeCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999764
No 6
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=4.8e-80 Score=709.91 Aligned_cols=449 Identities=53% Similarity=0.808 Sum_probs=407.5
Q ss_pred cccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhh
Q 003476 322 VSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (816)
Q Consensus 322 ~~~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~ 401 (816)
..+..+.++|+||+|++++|++++++++++++++.|..+|.++|+|+||+||||||||++|+++|+++++||+.++++++
T Consensus 45 ~~~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 124 (495)
T TIGR01241 45 LNEEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 124 (495)
T ss_pred ccCCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHH
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCC
Q 003476 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (816)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~p 481 (816)
.+.++|.+.+.++++|+.|+..+||||||||||.++..++... ...+++..+++|+||.+||++..+.+++||+|||+|
T Consensus 125 ~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~-~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~ 203 (495)
T TIGR01241 125 VEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGL-GGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRP 203 (495)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCc-CCccHHHHHHHHHHHhhhccccCCCCeEEEEecCCh
Confidence 9999999999999999999999999999999999998876532 234677889999999999999988999999999999
Q ss_pred CCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCc
Q 003476 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 561 (816)
Q Consensus 482 d~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~~~ 561 (816)
+.|||+++||||||+.|.++.|+.++|.+|++.++.+. ++..++++..++..|.|||++||+++|++|+..|.++++.
T Consensus 204 ~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~--~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~ 281 (495)
T TIGR01241 204 DVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNK--KLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKT 281 (495)
T ss_pred hhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcC--CCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999764 4457789999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHcchhhhhhhhccchhhHHHhhhcccceeehhhhhhCCCCCccceeeeccCCCccceeEEecCCcc
Q 003476 562 VVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANED 641 (816)
Q Consensus 562 ~It~~d~~~Al~r~i~g~e~k~~~l~~~ek~~iA~HEaGHAvv~~~l~~~l~~~~~v~kvsi~pr~g~alG~~~~~~~~~ 641 (816)
.|+.+||..|++++..|.+.+...+++.+++.+||||+|||+|+ ++++...++++++|.|| +.++||++..|.++
T Consensus 282 ~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEaGhAlv~----~~l~~~~~v~~vsi~pr-g~~~G~~~~~~~~~ 356 (495)
T TIGR01241 282 EITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEAGHALVG----LLLKDADPVHKVTIIPR-GQALGYTQFLPEED 356 (495)
T ss_pred CCCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHhHHHHH----HhcCCCCceEEEEEeec-CCccceEEecCccc
Confidence 99999999999999999888777888999999999999999997 46777789999999999 56999998888777
Q ss_pred cchhHHHHHHHHHHHhhhHHHHHHHHcCCCcCCChhhHHHHHHHHHHHHHHHhcccCCCCcceecccCCC-CCCCC-CCC
Q 003476 642 RYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSG-GIDES-GGG 719 (816)
Q Consensus 642 ~~~~~~~~l~~~i~~lLgGraAEel~f~~~~stGa~~Dl~~AT~lA~~mv~~~Gm~~~lg~~~~~~~~~~-~~~~~-~~~ 719 (816)
.+..++++++++|+++|||||||+++| |++|+|+++||++||++|+.||.+|||++.+|++++...... .+... ...
T Consensus 357 ~~~~t~~~l~~~i~v~LaGraAE~~~~-G~~s~Ga~~Dl~~At~lA~~mv~~~Gm~~~~g~~~~~~~~~~~~l~~~~~~~ 435 (495)
T TIGR01241 357 KYLYTKSQLLAQIAVLLGGRAAEEIIF-GEVTTGASNDIKQATNIARAMVTEWGMSDKLGPVAYGSDGGDVFLGRGFAKA 435 (495)
T ss_pred cccCCHHHHHHHHHHHhhHHHHHHHHh-cCCCCCchHHHHHHHHHHHHHHHHhCCCcccCceeeccCccccccccccccc
Confidence 889999999999999999999999999 689999999999999999999999999999999998653211 01000 001
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhcccCHHHHHHHHc
Q 003476 720 VPWGRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGLGACLEEKEKVEGEELQEWLG 782 (816)
Q Consensus 720 ~~~~~~~~~~~~~i~~ev~~il~~a~~~A~~iL~~nr~~L~~la~~LlekEtl~g~e~~~il~ 782 (816)
.+++ ..+...+|+||+++|++||++|++||++|++.|++||++|+++|+|+++||++|+.
T Consensus 436 ~~~s---~~~~~~id~~v~~lL~~a~~ra~~lL~~~~~~l~~la~~Ll~~e~L~~~ei~~il~ 495 (495)
T TIGR01241 436 KEYS---EETAREIDEEVKRIIEEAYKRAKQILTENRDELELLAKALLEKETITREEIKELLA 495 (495)
T ss_pred cccC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCeeCHHHHHHHhC
Confidence 2233 34567899999999999999999999999999999999999999999999999974
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-57 Score=487.62 Aligned_cols=254 Identities=47% Similarity=0.759 Sum_probs=243.5
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhh
Q 003476 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (816)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiV~~-Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~ 401 (816)
.++.|.+||+||.|+++.+++|+|.|+. |++|+.|.++|+.||+|||||||||||||+||||+|++.++.|+.+.+|+|
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 3567899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCC
Q 003476 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (816)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~p 481 (816)
+.+|+|+++..+|++|..|+.++||||||||||+++.+|-... .+++.|..+++-+||++||||++..+|-||+|||++
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~-t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~ 300 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSG-TSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRP 300 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCC-CCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCc
Confidence 9999999999999999999999999999999999999986543 457888999999999999999999999999999999
Q ss_pred CCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCc
Q 003476 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 561 (816)
Q Consensus 482 d~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~~~ 561 (816)
|.|||||+|||||||.|+|++||.++|.+||+.|.++ +.+.+++|++.||+.|.|+|||||+++|.+|.+.|.|+.+.
T Consensus 301 D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrk--M~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~ 378 (406)
T COG1222 301 DILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRK--MNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRD 378 (406)
T ss_pred cccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhh--ccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccC
Confidence 9999999999999999999999999999999999976 57789999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHcch
Q 003476 562 VVEKIDFIHAVERSIAGI 579 (816)
Q Consensus 562 ~It~~d~~~Al~r~i~g~ 579 (816)
.|+++||.+|+++++...
T Consensus 379 ~Vt~~DF~~Av~KV~~~~ 396 (406)
T COG1222 379 EVTMEDFLKAVEKVVKKK 396 (406)
T ss_pred eecHHHHHHHHHHHHhcc
Confidence 999999999999998643
No 8
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=2e-56 Score=546.54 Aligned_cols=319 Identities=20% Similarity=0.272 Sum_probs=274.4
Q ss_pred hHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHH-----------------------------
Q 003476 355 DKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY----------------------------- 405 (816)
Q Consensus 355 ~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~~----------------------------- 405 (816)
..+.++|+.+|+||||+||||||||+||||+|+++++||+.+++++|++.+
T Consensus 1620 P~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~ 1699 (2281)
T CHL00206 1620 PFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDT 1699 (2281)
T ss_pred CHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccch
Confidence 345788999999999999999999999999999999999999999998643
Q ss_pred --------------hhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCC---C
Q 003476 406 --------------VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---S 468 (816)
Q Consensus 406 --------------vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~---~ 468 (816)
++++..+++++|+.|++++||||||||||+++... ....++++|+++||+.. .
T Consensus 1700 e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d----------s~~ltL~qLLneLDg~~~~~s 1769 (2281)
T CHL00206 1700 ELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE----------SNYLSLGLLVNSLSRDCERCS 1769 (2281)
T ss_pred hhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc----------cceehHHHHHHHhccccccCC
Confidence 12234459999999999999999999999998542 22356899999999874 4
Q ss_pred CCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccc-cCHHHHHhhCCCCCHHHHHHH
Q 003476 469 NSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKD-IDLGDIASMTTGFTGADLANL 547 (816)
Q Consensus 469 ~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~d-vdl~~LA~~t~G~SgaDL~~L 547 (816)
..+|+||||||+|+.|||||+||||||++|.|+.|+..+|++++..++..+++++..+ +|++.+|+.|.|||||||+++
T Consensus 1770 ~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanL 1849 (2281)
T CHL00206 1770 TRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVAL 1849 (2281)
T ss_pred CCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHH
Confidence 5689999999999999999999999999999999999999999987665556666654 689999999999999999999
Q ss_pred HHHHHHHHHHhCCccccHHHHHHHHHHHHcchhhhhhhhccchhhHHHhhhcccceeehhhhhhCCCCCccceeeecc--
Q 003476 548 VNEAALLAGRLNKVVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILP-- 625 (816)
Q Consensus 548 vneAa~~A~r~~~~~It~~d~~~Al~r~i~g~e~k~~~l~~~ek~~iA~HEaGHAvv~~~l~~~l~~~~~v~kvsi~p-- 625 (816)
||||+..|.++++..|++++|..|++|+++|++.+.. +..++ .+|+||+|||||+ .++++.+++++|||+|
T Consensus 1850 vNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~~~~~~--~~~~~-~ia~yEiGhAvvq----~~L~~~~pv~kISIy~~~ 1922 (2281)
T CHL00206 1850 TNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVR--SVQDH-GILFYQIGRAVAQ----NVLLSNCPIDPISIYMKK 1922 (2281)
T ss_pred HHHHHHHHHHcCCCccCHHHHHHHHHHHHhhhhhccc--Ccchh-hhhhhHHhHHHHH----HhccCCCCcceEEEecCC
Confidence 9999999999999999999999999999999876532 33333 3699999999997 4688899999999964
Q ss_pred ---CCCccceeEEecCCcccchhHHHHHHHHHHHhhhHHHHHHHHcCCCcCCChhhHHHHHHHHHHHHHHHhcccCC---
Q 003476 626 ---RTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRT--- 699 (816)
Q Consensus 626 ---r~g~alG~~~~~~~~~~~~~~~~~l~~~i~~lLgGraAEel~f~~~~stGa~~Dl~~AT~lA~~mv~~~Gm~~~--- 699 (816)
|++.+.||+|+.|.+ +++++.+++.+|++||||||||+++|. ..+ .|+.||+.|||.+.
T Consensus 1923 ~~~r~~~~yl~~wyle~~--~~mkk~tiL~~Il~cLAGraAedlwf~-~~~------------~~~n~It~yg~vEnD~~ 1987 (2281)
T CHL00206 1923 KSCKEGDSYLYKWYFELG--TSMKKLTILLYLLSCSAGSVAQDLWSL-PGP------------DEKNGITSYGLVENDSD 1987 (2281)
T ss_pred ccccCcccceeEeecCCc--ccCCHHHHHHHHHHHhhhhhhhhhccC-cch------------hhhcCcccccchhhhhH
Confidence 346677999998765 699999999999999999999999993 222 58899999999988
Q ss_pred --CCccee
Q 003476 700 --IGPVSI 705 (816)
Q Consensus 700 --lg~~~~ 705 (816)
.|.+.+
T Consensus 1988 La~glLe~ 1995 (2281)
T CHL00206 1988 LVHGLLEV 1995 (2281)
T ss_pred HhHhHHHh
Confidence 566553
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-53 Score=482.29 Aligned_cols=324 Identities=38% Similarity=0.641 Sum_probs=280.7
Q ss_pred eEEEecCCCCCcchHHH-HHhCCceeccCCCC---------------------------CcchHHHHHHHHHHHHHHHHH
Q 003476 243 IVYTTTRPSDIKTPYEK-MLENQVEFGSPDKR---------------------------SGGFLNSALIALFYVAVLAGL 294 (816)
Q Consensus 243 ~~~~t~~~~~~~~~~~~-l~~~~v~~~~~~~~---------------------------~~~~~~~~l~~~~~~~~~~~~ 294 (816)
++.+|++|..++..+++ ..++.|+++.|+.. ++||++++|..+|..+.+...
T Consensus 323 vl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~ 402 (693)
T KOG0730|consen 323 VLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQAT 402 (693)
T ss_pred EEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHh
Confidence 35677888877655553 56777888777632 578999999999988887766
Q ss_pred HhhccccccccccccccccCCCCCCCccccCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcC
Q 003476 295 LHRFPVSFSQTAGQVGHRKTRGPGGAKVSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGL 373 (816)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtf~DV~G~ee~K~~L~eiV~~-Lk~p~~~~~lg~~~pkGVLL~GP 373 (816)
.+.+ ..+....++ ...+..+....+.++++|+||.|++++|++|++.|.+ +++|++|.++|..+|+|||||||
T Consensus 403 r~~~-~~~~~A~~~-----i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGP 476 (693)
T KOG0730|consen 403 RRTL-EIFQEALMG-----IRPSALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGP 476 (693)
T ss_pred hhhH-HHHHHHHhc-----CCchhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECC
Confidence 5411 111111111 1222233444677999999999999999999999999 99999999999999999999999
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEeechhhHHHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHH
Q 003476 374 PGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDERE 453 (816)
Q Consensus 374 PGTGKT~LAkALA~elgvpfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~ 453 (816)
||||||++|||+|++++++|+++++.++.++|+|++++.++++|.+|+..+|||||+||||+++..|++.. +...+
T Consensus 477 PGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~----~~v~~ 552 (693)
T KOG0730|consen 477 PGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSS----SGVTD 552 (693)
T ss_pred CCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCc----cchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999997532 26678
Q ss_pred HHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHH
Q 003476 454 QTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIA 533 (816)
Q Consensus 454 ~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA 533 (816)
+++++||++|||+....+|+||||||+|+.||+||+||||||+.|+|++||.+.|.+||+.++++ +++.+++|++.||
T Consensus 553 RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk--mp~~~~vdl~~La 630 (693)
T KOG0730|consen 553 RVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK--MPFSEDVDLEELA 630 (693)
T ss_pred HHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc--CCCCccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999976 6889999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHhC--CccccHHHHHHHHHHHHcc
Q 003476 534 SMTTGFTGADLANLVNEAALLAGRLN--KVVVEKIDFIHAVERSIAG 578 (816)
Q Consensus 534 ~~t~G~SgaDL~~LvneAa~~A~r~~--~~~It~~d~~~Al~r~i~g 578 (816)
..|+|||||||.++|++|+..|.+++ ...|+.+||++|+..+...
T Consensus 631 ~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~~~r~s 677 (693)
T KOG0730|consen 631 QATEGYSGAEIVAVCQEAALLALRESIEATEITWQHFEEALKAVRPS 677 (693)
T ss_pred HHhccCChHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhccc
Confidence 99999999999999999999999885 4678999999999776543
No 10
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-51 Score=459.02 Aligned_cols=252 Identities=43% Similarity=0.683 Sum_probs=234.1
Q ss_pred CCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 003476 325 QGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (816)
Q Consensus 325 ~~~~vtf~DV~G~ee~K~~L~eiV~~-Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~ 403 (816)
..|+|+|+||.|+++++.+|...|.+ .|+|+.|+++|...|.|||||||||||||+||||+|+|+|.+|+++.+.++++
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlN 583 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLN 583 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHH
Confidence 45899999999999999999987777 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCC
Q 003476 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (816)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~ 483 (816)
+|+|+++..||.+|..|+..+|||||+||||+|.+.|+.. ......+++||||+||||...+.+|.||||||+||.
T Consensus 584 kYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~----~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDi 659 (802)
T KOG0733|consen 584 KYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDE----GSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDI 659 (802)
T ss_pred HHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCC----CchhHHHHHHHHHHHhcccccccceEEEeecCCCcc
Confidence 9999999999999999999999999999999999999754 355667999999999999999999999999999999
Q ss_pred CCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCC--CCCHHHHHHHHHHHHHHHHHhC--
Q 003476 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT--GFTGADLANLVNEAALLAGRLN-- 559 (816)
Q Consensus 484 LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~--G~SgaDL~~LvneAa~~A~r~~-- 559 (816)
+|||++||||||+.++|++|+.++|.+||+.+.++...+++.|+|++.||+.+. |||||||+.||++|...|.++.
T Consensus 660 IDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~ 739 (802)
T KOG0733|consen 660 IDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLF 739 (802)
T ss_pred cchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999977789999999999999776 9999999999999999998751
Q ss_pred --------------CccccHHHHHHHHHHHHcchh
Q 003476 560 --------------KVVVEKIDFIHAVERSIAGIE 580 (816)
Q Consensus 560 --------------~~~It~~d~~~Al~r~i~g~e 580 (816)
...++..||++|+.++.....
T Consensus 740 ~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~ 774 (802)
T KOG0733|consen 740 EIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVS 774 (802)
T ss_pred hccccCcccceeeeeeeecHHHHHHHHHhcCCCcc
Confidence 124677899999988765443
No 11
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.7e-46 Score=381.19 Aligned_cols=258 Identities=41% Similarity=0.676 Sum_probs=243.8
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhh
Q 003476 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (816)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiV~~-Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~ 401 (816)
.++.|.+|+.||.|+.+..+.|+|+|+. +.+|++|..+|+.||+|||||||||||||++|||+|++.+..|+.+-+|++
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigsel 247 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL 247 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH
Confidence 3678999999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCC
Q 003476 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (816)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~p 481 (816)
+.+|+|+++..+|++|+.|+....||||+||||+++..|-... .+++.+..+++-.|++++|||+++.++-|+.|||+|
T Consensus 248 vqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg-~ggdnevqrtmleli~qldgfdprgnikvlmatnrp 326 (435)
T KOG0729|consen 248 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDG-AGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRP 326 (435)
T ss_pred HHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCC-CCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCC
Confidence 9999999999999999999999999999999999998874432 356788899999999999999999999999999999
Q ss_pred CCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCc
Q 003476 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 561 (816)
Q Consensus 482 d~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~~~ 561 (816)
+.|||||+||||+||.++|.+||.+.|..||+.|.+. +....++-++.||+.++..+|++|+.+|.+|.+.|.+..+.
T Consensus 327 dtldpallrpgrldrkvef~lpdlegrt~i~kihaks--msverdir~ellarlcpnstgaeirsvcteagmfairarrk 404 (435)
T KOG0729|consen 327 DTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKS--MSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRK 404 (435)
T ss_pred CCcCHhhcCCcccccceeccCCcccccceeEEEeccc--cccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhh
Confidence 9999999999999999999999999999999999865 56778899999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHcchhhhh
Q 003476 562 VVEKIDFIHAVERSIAGIEKKT 583 (816)
Q Consensus 562 ~It~~d~~~Al~r~i~g~e~k~ 583 (816)
..|..||.+|+++++.|..+-+
T Consensus 405 ~atekdfl~av~kvvkgy~kfs 426 (435)
T KOG0729|consen 405 VATEKDFLDAVNKVVKGYAKFS 426 (435)
T ss_pred hhhHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999998876544
No 12
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-44 Score=405.10 Aligned_cols=227 Identities=45% Similarity=0.764 Sum_probs=214.8
Q ss_pred CCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHH
Q 003476 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (816)
Q Consensus 326 ~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~~ 405 (816)
..+++|+||.|++....+|.+++..+++|+.|..+|..||+||||+||||||||+||+|+|+++++||+.+++.++++.+
T Consensus 184 ~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 184 ESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 44789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCC----CcEEEEEEcCCC
Q 003476 406 VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN----SAVIVLGATNRS 481 (816)
Q Consensus 406 vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~----~~ViVIaATN~p 481 (816)
.|++++++|++|++|+..+|||+||||||+|+++|.. +..+.-++++.|||+.||++... .+|+||+|||+|
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~----aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRP 339 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE----AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRP 339 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhh----HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCC
Confidence 9999999999999999999999999999999999874 34566678999999999988654 679999999999
Q ss_pred CCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 003476 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (816)
Q Consensus 482 d~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~ 558 (816)
|.|||+|+|+||||+.|.+..|+..+|.+||+..+++ +.++.++|+..||+.|+||.||||..||.+|+..|.++
T Consensus 340 DslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~--lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 340 DSLDPALRRAGRFDREICLGVPSETAREEILRIICRG--LRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred cccCHHHhccccccceeeecCCchHHHHHHHHHHHhh--CCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999975 56778999999999999999999999999999999875
No 13
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-44 Score=366.43 Aligned_cols=251 Identities=44% Similarity=0.700 Sum_probs=236.7
Q ss_pred cCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 003476 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (816)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiV~~-Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~ 402 (816)
.+.|.+++.||.|++-.|++++|.|+. |.+.+.|+.+|+.||+|||||||||||||+||||+|+.....|+.+.+++|+
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 356899999999999999999999998 8899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCC
Q 003476 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (816)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd 482 (816)
.+|.|++...+|++|..|+.++|+||||||||++..+|-+.. .+.+.+..+++-.||++||||+...+|-||.|||+.|
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaq-tgadrevqril~ellnqmdgfdq~~nvkvimatnrad 305 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQ-TGADREVQRILIELLNQMDGFDQTTNVKVIMATNRAD 305 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhcccc-ccccHHHHHHHHHHHHhccCcCcccceEEEEecCccc
Confidence 999999999999999999999999999999999998875432 4567788899999999999999999999999999999
Q ss_pred CCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCcc
Q 003476 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (816)
Q Consensus 483 ~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~~~~ 562 (816)
.|||||+||||+||.|+|++||..++.-++.....+ +.+.+++|++.+..+....|++||..+|++|.+.|.|.++-.
T Consensus 306 tldpallrpgrldrkiefplpdrrqkrlvf~titsk--m~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryv 383 (408)
T KOG0727|consen 306 TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSK--MNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYV 383 (408)
T ss_pred ccCHhhcCCccccccccCCCCchhhhhhhHHhhhhc--ccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhccee
Confidence 999999999999999999999999999999988876 467899999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHc
Q 003476 563 VEKIDFIHAVERSIA 577 (816)
Q Consensus 563 It~~d~~~Al~r~i~ 577 (816)
|...||++|...++.
T Consensus 384 vl~kd~e~ay~~~vk 398 (408)
T KOG0727|consen 384 VLQKDFEKAYKTVVK 398 (408)
T ss_pred eeHHHHHHHHHhhcC
Confidence 999999999987653
No 14
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-44 Score=365.60 Aligned_cols=251 Identities=41% Similarity=0.663 Sum_probs=239.3
Q ss_pred cCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 003476 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (816)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiV~~-Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~ 402 (816)
++.|..+++-|.|++...++++|+++. .++|+.|..+|+..|+|+|||||||||||+||+|+|....+.|+.+++++++
T Consensus 139 eKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselv 218 (404)
T KOG0728|consen 139 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 218 (404)
T ss_pred hhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHH
Confidence 445788999999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCC
Q 003476 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (816)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd 482 (816)
.+|.|++...+|++|-.|+.++|+|||.||||.++..|..+. .+++.+..+++-.||+++|||+...++-||.|||+.|
T Consensus 219 qk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~-~ggdsevqrtmlellnqldgfeatknikvimatnrid 297 (404)
T KOG0728|consen 219 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESG-SGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRID 297 (404)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCC-CCccHHHHHHHHHHHHhccccccccceEEEEeccccc
Confidence 999999999999999999999999999999999999886543 4578889999999999999999999999999999999
Q ss_pred CCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCcc
Q 003476 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (816)
Q Consensus 483 ~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~~~~ 562 (816)
.|||||+||||+||.|+|++|+.+.|.+||+.|.++- .+...+++..+|....|.||+++..+|.+|.+.|.|+.+..
T Consensus 298 ild~allrpgridrkiefp~p~e~ar~~ilkihsrkm--nl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvh 375 (404)
T KOG0728|consen 298 ILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKM--NLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVH 375 (404)
T ss_pred cccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhh--chhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhcc
Confidence 9999999999999999999999999999999999874 56788999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHc
Q 003476 563 VEKIDFIHAVERSIA 577 (816)
Q Consensus 563 It~~d~~~Al~r~i~ 577 (816)
+|++||+-|+.+++.
T Consensus 376 vtqedfemav~kvm~ 390 (404)
T KOG0728|consen 376 VTQEDFEMAVAKVMQ 390 (404)
T ss_pred ccHHHHHHHHHHHHh
Confidence 999999999999875
No 15
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-43 Score=404.95 Aligned_cols=249 Identities=40% Similarity=0.652 Sum_probs=224.7
Q ss_pred cCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 003476 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (816)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiV~~-Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~ 402 (816)
.+.|+|+|+||.|++++|.++.+-++. |++|+.|. .|.++-.|||||||||||||++|||+|.|+...|+++.+.+++
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfs-sglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELL 742 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFS-SGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELL 742 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhh-ccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHH
Confidence 567899999999999999999999998 89998764 5888888999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCC--CCCcEEEEEEcCC
Q 003476 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--SNSAVIVLGATNR 480 (816)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~--~~~~ViVIaATN~ 480 (816)
+||+|++++++|++|++||..+|||||+||+|.+++.|+... -+.....+++.|||.||||+. +...|+||+||||
T Consensus 743 NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sG--DSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNR 820 (953)
T KOG0736|consen 743 NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSG--DSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNR 820 (953)
T ss_pred HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCC--CccccHHHHHHHHHHHhhcccCCCCCceEEEecCCC
Confidence 999999999999999999999999999999999999997653 244567899999999999998 5678999999999
Q ss_pred CCCCCcccCCCCcccceEEecCCC-HHHHHHHHHHHHhcCCCCCccccCHHHHHhhC-CCCCHHHHHHHHHHHHHHHHHh
Q 003476 481 SDVLDPALRRPGRFDRVVMVETPD-KIGREAILKVHVSKKELPLAKDIDLGDIASMT-TGFTGADLANLVNEAALLAGRL 558 (816)
Q Consensus 481 pd~LDpALlRpGRFdr~I~v~~Pd-~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t-~G~SgaDL~~LvneAa~~A~r~ 558 (816)
||.|||||+||||||+.+++.+++ .+.+..+|+...++ +.+++++|+.++|+.+ ..|||||+..+|..|.+.|.++
T Consensus 821 PDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrk--FkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR 898 (953)
T KOG0736|consen 821 PDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRK--FKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKR 898 (953)
T ss_pred ccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHH--ccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999886 56677888888776 5789999999999988 5799999999999999999875
Q ss_pred C-----------------CccccHHHHHHHHHHHHc
Q 003476 559 N-----------------KVVVEKIDFIHAVERSIA 577 (816)
Q Consensus 559 ~-----------------~~~It~~d~~~Al~r~i~ 577 (816)
. .-.|+++||.+|+++...
T Consensus 899 ~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~P 934 (953)
T KOG0736|consen 899 TIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQP 934 (953)
T ss_pred HHHHhhhccccccccCCceEEEEHHHHHHHHHhcCC
Confidence 2 245889999999987654
No 16
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=1.9e-43 Score=363.69 Aligned_cols=241 Identities=39% Similarity=0.625 Sum_probs=222.1
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 003476 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (816)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~ 403 (816)
+..+.++|+||+|++++|...+-++++|.+|++|.. =.|++||+|||||||||++|||+|+++++||+.+.+.+++.
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~---WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liG 189 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGD---WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG 189 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcc---cCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHH
Confidence 556789999999999999999999999999999744 46899999999999999999999999999999999999999
Q ss_pred HHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCC
Q 003476 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (816)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~ 483 (816)
.|+|+++.+++++|+.|++.+|||+||||+|+|+-+|.-. ........++|+||++|||...+.+|+.|||||+|+.
T Consensus 190 ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQ---elRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~ 266 (368)
T COG1223 190 EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQ---ELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPEL 266 (368)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHH---HhcccHHHHHHHHHHhccCcccCCceEEEeecCChhh
Confidence 9999999999999999999999999999999998766421 1223356789999999999999999999999999999
Q ss_pred CCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHH-HHHHHHHHHHHHhCCcc
Q 003476 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLA-NLVNEAALLAGRLNKVV 562 (816)
Q Consensus 484 LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~-~LvneAa~~A~r~~~~~ 562 (816)
||+|+++ ||...|+|.+|+.++|..|++.++.+ +|+.-+.+++.++..|.||||+||. .+++.|...|..+++..
T Consensus 267 LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~--~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~ 342 (368)
T COG1223 267 LDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKK--FPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREK 342 (368)
T ss_pred cCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHh--CCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhh
Confidence 9999998 99999999999999999999999976 5677788899999999999999995 67888999999999999
Q ss_pred ccHHHHHHHHHH
Q 003476 563 VEKIDFIHAVER 574 (816)
Q Consensus 563 It~~d~~~Al~r 574 (816)
|+.+||+.|+.+
T Consensus 343 v~~edie~al~k 354 (368)
T COG1223 343 VEREDIEKALKK 354 (368)
T ss_pred hhHHHHHHHHHh
Confidence 999999999987
No 17
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-43 Score=364.40 Aligned_cols=251 Identities=38% Similarity=0.648 Sum_probs=235.5
Q ss_pred cCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 003476 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (816)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiV~~-Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~ 402 (816)
...|+-+++||.|++...++|.|.+-. +.++++|..+|+++|+|+|+|||||||||++|||.|...+..|..+.+.+++
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLV 242 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 242 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHH
Confidence 445778899999999999999886665 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCC
Q 003476 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (816)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd 482 (816)
.+|.|.+++.+|+.|..|+..+|+||||||+|+++.+|-.+. ..++.+..+++-.||+++|||.++..|-||+|||+.|
T Consensus 243 QMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSe-k~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvD 321 (424)
T KOG0652|consen 243 QMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSE-KAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVD 321 (424)
T ss_pred hhhhcchHHHHHHHHHHhhccCCeEEEEechhhhcccccccc-ccccHHHHHHHHHHHHhhcCCCCccceEEEeeccccc
Confidence 999999999999999999999999999999999999885542 3567788899999999999999999999999999999
Q ss_pred CCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCcc
Q 003476 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (816)
Q Consensus 483 ~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~~~~ 562 (816)
.|||||+|+||+||.|+|+.|+.+.|.+|++.|.++- ...+|+++++||+.|.+|+|+++..+|-+|.+.|.|++...
T Consensus 322 iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKM--nv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~ate 399 (424)
T KOG0652|consen 322 ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKM--NVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATE 399 (424)
T ss_pred ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhc--CCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhccccc
Confidence 9999999999999999999999999999999999874 56899999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHc
Q 003476 563 VEKIDFIHAVERSIA 577 (816)
Q Consensus 563 It~~d~~~Al~r~i~ 577 (816)
|+.+||.+++..+.+
T Consensus 400 v~heDfmegI~eVqa 414 (424)
T KOG0652|consen 400 VTHEDFMEGILEVQA 414 (424)
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999999877653
No 18
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-44 Score=370.95 Aligned_cols=252 Identities=41% Similarity=0.680 Sum_probs=239.0
Q ss_pred cCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 003476 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (816)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiV~~-Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~ 402 (816)
+..|.-||+|+.|++...++++|.|+. |.+|+.|..+|+++|+||+|||+||||||+||+|+|+.....|+.+-+++++
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 456788999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCC
Q 003476 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (816)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd 482 (816)
.+|.|++.+.+|++|..|..++|+|+||||||+++.+|-+.. .++..+..+++-.||+++|||+++..|-||.|||+.+
T Consensus 257 QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~-SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie 335 (440)
T KOG0726|consen 257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSN-SGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE 335 (440)
T ss_pred HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCC-CccHHHHHHHHHHHHHhccCccccCCeEEEEeccccc
Confidence 999999999999999999999999999999999999885542 4567788899999999999999999999999999999
Q ss_pred CCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCcc
Q 003476 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (816)
Q Consensus 483 ~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~~~~ 562 (816)
.|||||+||||+||.|.|+.||...+..||..|..+ ..+..+++++.+......+||+||..+|.+|.++|.|+.+..
T Consensus 336 ~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~--Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~ 413 (440)
T KOG0726|consen 336 TLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSR--MTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMK 413 (440)
T ss_pred ccCHhhcCCCccccccccCCCchhhhceeEEEeecc--cchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhh
Confidence 999999999999999999999999999999999876 567899999999998899999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHcc
Q 003476 563 VEKIDFIHAVERSIAG 578 (816)
Q Consensus 563 It~~d~~~Al~r~i~g 578 (816)
++++||..|.++++..
T Consensus 414 vt~~DF~ka~e~V~~~ 429 (440)
T KOG0726|consen 414 VTMEDFKKAKEKVLYK 429 (440)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 9999999999998854
No 19
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=2.5e-41 Score=378.41 Aligned_cols=252 Identities=42% Similarity=0.671 Sum_probs=233.9
Q ss_pred cCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 003476 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (816)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiV~~-Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~ 402 (816)
++.|.++|+||+|++.+|++|++.++. +.+|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 346889999999999999999999986 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCC
Q 003476 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (816)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd 482 (816)
..|+|.+...++++|..|+..+||||||||||.++..+.+.. .+.+.+..+++.+++.+||++....+++||+|||+++
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~-~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d 295 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQ-TGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD 295 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhcccccccc-CCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCch
Confidence 999999999999999999999999999999999987764322 2334566788999999999998888999999999999
Q ss_pred CCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCcc
Q 003476 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (816)
Q Consensus 483 ~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~~~~ 562 (816)
.|||+++||||||+.|+|++|+.++|.+||+.++.+. .+..++++..++..|.||||+||.++|++|.+.|.++++..
T Consensus 296 ~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~--~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~ 373 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKM--NLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYV 373 (398)
T ss_pred hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcC--CCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999999999999764 56788999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHcc
Q 003476 563 VEKIDFIHAVERSIAG 578 (816)
Q Consensus 563 It~~d~~~Al~r~i~g 578 (816)
|+++||.+|+++++.+
T Consensus 374 i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 374 ILPKDFEKGYKTVVRK 389 (398)
T ss_pred cCHHHHHHHHHHHHhc
Confidence 9999999999998754
No 20
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-42 Score=368.58 Aligned_cols=245 Identities=38% Similarity=0.589 Sum_probs=221.4
Q ss_pred CCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 003476 325 QGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (816)
Q Consensus 325 ~~~~vtf~DV~G~ee~K~~L~eiV~~-Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~ 403 (816)
..|.++|+||+|++++|+-|+|.|-. +.-|+-| +-..+|.+|||++||||||||+||||+|.|++..||.|+.+.+.+
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F-~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltS 283 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFF-KGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTS 283 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHH-hhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhh
Confidence 45789999999999999999998877 6666654 446678899999999999999999999999999999999999999
Q ss_pred HHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCC-Cc---EEEEEEcC
Q 003476 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN-SA---VIVLGATN 479 (816)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~-~~---ViVIaATN 479 (816)
+|-|++++.||-+|+.|+.++|++|||||||+|+.+|++. ..++..+++-+.||.+|||.... .+ |+|+||||
T Consensus 284 KwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s---~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN 360 (491)
T KOG0738|consen 284 KWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS---SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATN 360 (491)
T ss_pred hhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc---cchhHHHHHHHHHHHHhhccccccccceeEEEEeccC
Confidence 9999999999999999999999999999999999999763 56777889999999999998653 23 89999999
Q ss_pred CCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Q 003476 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN 559 (816)
Q Consensus 480 ~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~ 559 (816)
.|+.||.||+| ||...|+|++|+.++|..+|+..++. ++++++++++.|+..++||||+||.++|++|.+.+.|+.
T Consensus 361 ~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~--~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~ 436 (491)
T KOG0738|consen 361 FPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRS--VELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRK 436 (491)
T ss_pred CCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhcc--ccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999975 578899999999999999999999999999999998841
Q ss_pred -----------------CccccHHHHHHHHHHHHc
Q 003476 560 -----------------KVVVEKIDFIHAVERSIA 577 (816)
Q Consensus 560 -----------------~~~It~~d~~~Al~r~i~ 577 (816)
...|++.||+.|+.++-.
T Consensus 437 i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~p 471 (491)
T KOG0738|consen 437 IAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRP 471 (491)
T ss_pred HhcCCcHHhhhhhhhccccccchhhHHHHHHHcCc
Confidence 234788899999887654
No 21
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=5.6e-40 Score=367.53 Aligned_cols=255 Identities=47% Similarity=0.761 Sum_probs=234.8
Q ss_pred cCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 003476 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (816)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiV~~-Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~ 402 (816)
...|.++|+||+|+++++++|++.+.. +.+++.|..+|..+|+|+|||||||||||++|+++|++++.+|+.++++++.
T Consensus 123 ~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~ 202 (389)
T PRK03992 123 IESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 202 (389)
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHh
Confidence 345789999999999999999999887 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCC
Q 003476 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (816)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd 482 (816)
..|.|.++..++.+|+.|+..+||||||||+|.++..+.+.. ...+.+..+++.+++.+++++....+++||+|||+++
T Consensus 203 ~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~-~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~ 281 (389)
T PRK03992 203 QKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSG-TSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRID 281 (389)
T ss_pred HhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCC-CCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChh
Confidence 999999999999999999999999999999999987775432 2234566788999999999998888999999999999
Q ss_pred CCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCcc
Q 003476 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (816)
Q Consensus 483 ~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~~~~ 562 (816)
.+|++++||||||+.|.|++|+.++|.+||+.|+.+. ++..++++..+|..|.||+|+||+++|++|+..|.+++...
T Consensus 282 ~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~--~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~ 359 (389)
T PRK03992 282 ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKM--NLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTE 359 (389)
T ss_pred hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccC--CCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999764 56678899999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHcchhh
Q 003476 563 VEKIDFIHAVERSIAGIEK 581 (816)
Q Consensus 563 It~~d~~~Al~r~i~g~e~ 581 (816)
|+.+||.+|++++..+..+
T Consensus 360 i~~~d~~~A~~~~~~~~~~ 378 (389)
T PRK03992 360 VTMEDFLKAIEKVMGKEEK 378 (389)
T ss_pred cCHHHHHHHHHHHhccccc
Confidence 9999999999998765443
No 22
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=100.00 E-value=2.7e-41 Score=349.29 Aligned_cols=212 Identities=39% Similarity=0.530 Sum_probs=172.3
Q ss_pred cHHHHHHHHHHHHcchhhhhhhhccchhhHHHhhhcccceeehhhhhhCCCCCccceeeeccCCCccceeEEecCCcccc
Q 003476 564 EKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRY 643 (816)
Q Consensus 564 t~~d~~~Al~r~i~g~e~k~~~l~~~ek~~iA~HEaGHAvv~~~l~~~l~~~~~v~kvsi~pr~g~alG~~~~~~~~~~~ 643 (816)
|++||++|+++++.|.+++...+++++++++||||||||+|+ +++|..++|+++||+||+. ++||+.+.|.++.+
T Consensus 1 ~~~d~~~a~drv~~G~~~~~~~~~~~~~~~~A~HEAGhAvva----~~l~~~~~v~~vsi~prg~-~~G~~~~~~~~~~~ 75 (213)
T PF01434_consen 1 TMEDIEEAIDRVLMGPEKKSRKLSEEEKRRIAYHEAGHAVVA----YLLPPADPVSKVSIVPRGS-ALGFTQFTPDEDRY 75 (213)
T ss_dssp -HHHHHHHHHHHHCCSCCTTS---HHHHHHHHHHHHHHHHHH----HHSSS---EEEEESSTTCC-CCHCCEECHHTT-S
T ss_pred CHHHHHHHHHHHhcCcCcCCCCCCHHHHHHHHHHHHHHHHHH----HHhcccccEEEEEEecCCC-cceeEEeccchhcc
Confidence 678999999999999998888899999999999999999997 4678888999999999955 99999998888888
Q ss_pred hhHHHHHHHHHHHhhhHHHHHHHHcC-CCcCCChhhHHHHHHHHHHHHHHHhcccCCCCcceecccCCCCCCCCCCCCCC
Q 003476 644 LLFIDELCGRLVTLLGGRAAEEVAYS-GRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPW 722 (816)
Q Consensus 644 ~~~~~~l~~~i~~lLgGraAEel~f~-~~~stGa~~Dl~~AT~lA~~mv~~~Gm~~~lg~~~~~~~~~~~~~~~~~~~~~ 722 (816)
..|+++|+++|+++|||||||+++|| +++|+|+++||++||+||+.||.+||||+++|++++.................
T Consensus 76 ~~t~~~l~~~i~v~LaGraAEe~~~g~~~~stGa~~DL~~At~iA~~mv~~~Gm~~~~g~~~~~~~~~~~~~~~~~~~~~ 155 (213)
T PF01434_consen 76 IRTRSYLEDRICVLLAGRAAEELFFGEDNVSTGASSDLQQATEIARKMVASYGMGDSLGLLSYSPNDDDEVFLGREWNSR 155 (213)
T ss_dssp S-BHHHHHHHHHHHHHHHHHHHHHHSCCS-BGGGHHHHHHHHHHHHHHHHTST-TTTTTSS-SEEEE-S-SSS-E---EE
T ss_pred cccHHHHHhhHHHHHHHHHHHHhhcCcceecccchhHHHHHHHHHHHHHHHhCCCCCCceeeeecccccccccccccccc
Confidence 89999999999999999999999995 48999999999999999999999999999999998865433110000000001
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhcccCHHHHHHH
Q 003476 723 GRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGLGACLEEKEKVEGEELQEW 780 (816)
Q Consensus 723 ~~~~~~~~~~i~~ev~~il~~a~~~A~~iL~~nr~~L~~la~~LlekEtl~g~e~~~i 780 (816)
......+.+.+++||+++|++||++|++||++|++.|++||++|+++|+|+++||++|
T Consensus 156 ~~~s~~~~~~i~~ev~~lL~~a~~~a~~iL~~~r~~l~~la~~Lle~~~L~~~ei~~I 213 (213)
T PF01434_consen 156 RPMSEETRALIDREVRKLLEEAYARAKEILEENREALEALAEALLEKETLSGEEIEEI 213 (213)
T ss_dssp ESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHhhC
Confidence 1223456788999999999999999999999999999999999999999999999986
No 23
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-40 Score=376.27 Aligned_cols=250 Identities=49% Similarity=0.772 Sum_probs=233.8
Q ss_pred cccCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechh
Q 003476 322 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (816)
Q Consensus 322 ~~~~~~~vtf~DV~G~ee~K~~L~eiV~~-Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~ 400 (816)
+....+.++|+|+.|++++|+.+++.+++ ++.++.|...+.++|+|+|||||||||||+||+|+|.+++.+|+.+.+++
T Consensus 232 ~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~ 311 (494)
T COG0464 232 VLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSE 311 (494)
T ss_pred cccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHH
Confidence 34457889999999999999999999999 88999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCC
Q 003476 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (816)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~ 480 (816)
+.++|+|++++.++.+|..|+..+||||||||+|++...|+.. .+....++++++|.+|++.+...+|+||+|||+
T Consensus 312 l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~----~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~ 387 (494)
T COG0464 312 LLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPS----EDGSGRRVVGQLLTELDGIEKAEGVLVIAATNR 387 (494)
T ss_pred HhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCC----CchHHHHHHHHHHHHhcCCCccCceEEEecCCC
Confidence 9999999999999999999999999999999999999888643 222336899999999999999999999999999
Q ss_pred CCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC-
Q 003476 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN- 559 (816)
Q Consensus 481 pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~- 559 (816)
|+.+|+|++||||||+.++|++||..+|.+|++.|+.+...++..++++..+++.|.||||+||.++|++|+..+.++.
T Consensus 388 p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~ 467 (494)
T COG0464 388 PDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR 467 (494)
T ss_pred ccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999766666789999999999999999999999999999999988
Q ss_pred CccccHHHHHHHHHHH
Q 003476 560 KVVVEKIDFIHAVERS 575 (816)
Q Consensus 560 ~~~It~~d~~~Al~r~ 575 (816)
...|+++||..|+.+.
T Consensus 468 ~~~~~~~~~~~a~~~~ 483 (494)
T COG0464 468 RREVTLDDFLDALKKI 483 (494)
T ss_pred cCCccHHHHHHHHHhc
Confidence 7889999999999873
No 24
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=1.1e-39 Score=367.98 Aligned_cols=251 Identities=42% Similarity=0.686 Sum_probs=233.1
Q ss_pred cCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 003476 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (816)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiV~~-Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~ 402 (816)
+..|.++|+||.|+++++++|+++++. +.+|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~ 254 (438)
T PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI 254 (438)
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence 345789999999999999999999986 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCC
Q 003476 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (816)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd 482 (816)
..|.|.++..++++|..|+..+||||||||||.++..+.... .++..+..+++.++|.+||++....++.||+|||+++
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~-sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d 333 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDAT-SGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIE 333 (438)
T ss_pred hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCC-CcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChH
Confidence 999999999999999999999999999999999997765432 2344566778899999999998888999999999999
Q ss_pred CCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCcc
Q 003476 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (816)
Q Consensus 483 ~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~~~~ 562 (816)
.||++++||||||+.|+|+.|+.++|.+||+.|+.+. .+..++++..++..+.||||+||.++|++|+..|.++++..
T Consensus 334 ~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~--~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~ 411 (438)
T PTZ00361 334 SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKM--TLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMK 411 (438)
T ss_pred HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcC--CCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999999998764 56788999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHc
Q 003476 563 VEKIDFIHAVERSIA 577 (816)
Q Consensus 563 It~~d~~~Al~r~i~ 577 (816)
|+.+||..|+++++.
T Consensus 412 Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 412 VTQADFRKAKEKVLY 426 (438)
T ss_pred cCHHHHHHHHHHHHh
Confidence 999999999999864
No 25
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-39 Score=368.45 Aligned_cols=225 Identities=41% Similarity=0.650 Sum_probs=212.9
Q ss_pred ccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHHh
Q 003476 328 TITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (816)
Q Consensus 328 ~vtf~DV~G~ee~K~~L~eiV~~-Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~~v 406 (816)
.++|+||.|+.++|+.|++++++ -+.|..|...+.+.+.|||||||||||||+||.|+|..+++.|+++.+.++.++|.
T Consensus 663 gi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyI 742 (952)
T KOG0735|consen 663 GIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYI 742 (952)
T ss_pred CCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHh
Confidence 49999999999999999999999 78999999999999999999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCc
Q 003476 407 GMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDP 486 (816)
Q Consensus 407 G~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDp 486 (816)
|.++..+|++|.+|+..+|||+|+||+|.++++|+.+. .....+++||||++|||.+.-.||.|+|||.|||.|||
T Consensus 743 GaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDs----TGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDp 818 (952)
T KOG0735|consen 743 GASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDS----TGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDP 818 (952)
T ss_pred cccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCC----CCchHHHHHHHHHhhccccccceEEEEEecCCccccCH
Confidence 99999999999999999999999999999999997542 33456899999999999999999999999999999999
Q ss_pred ccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 003476 487 ALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (816)
Q Consensus 487 ALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~ 558 (816)
||+||||+|+.++.+.|+..+|.+|++...... .++.++|++.+|..|.|||||||..++..|.+.|..+
T Consensus 819 ALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~--~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 819 ALLRPGRLDKLVYCPLPDEPERLEILQVLSNSL--LKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred hhcCCCccceeeeCCCCCcHHHHHHHHHHhhcc--CCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998754 6788999999999999999999999999999888653
No 26
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=8.7e-39 Score=383.79 Aligned_cols=250 Identities=46% Similarity=0.803 Sum_probs=229.0
Q ss_pred cCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 003476 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (816)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiV~~-Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~ 402 (816)
...+.++|+||+|++.+|++|++.+.+ +++++.|..+|.++|+|+|||||||||||++|+++|++++++|+.++++++.
T Consensus 445 ~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~ 524 (733)
T TIGR01243 445 VEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEIL 524 (733)
T ss_pred ccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHh
Confidence 345789999999999999999999987 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCC
Q 003476 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (816)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd 482 (816)
++|+|.++..++.+|..|+..+||||||||||+++..++... .+....+++++||.+||++....+++||+|||+|+
T Consensus 525 ~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~---~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~ 601 (733)
T TIGR01243 525 SKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF---DTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPD 601 (733)
T ss_pred hcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC---CccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChh
Confidence 999999999999999999999999999999999998776432 23355789999999999998888999999999999
Q ss_pred CCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC---
Q 003476 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN--- 559 (816)
Q Consensus 483 ~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~--- 559 (816)
.||++++||||||+.|++++|+.++|.+||+.+.++ .++..+++++.+|..|.||||+||.++|++|+..|.++.
T Consensus 602 ~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~--~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~ 679 (733)
T TIGR01243 602 ILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS--MPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGS 679 (733)
T ss_pred hCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC--CCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999865 567788999999999999999999999999999988742
Q ss_pred ---------------CccccHHHHHHHHHHHHcc
Q 003476 560 ---------------KVVVEKIDFIHAVERSIAG 578 (816)
Q Consensus 560 ---------------~~~It~~d~~~Al~r~i~g 578 (816)
...|+++||.+|+.++...
T Consensus 680 ~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps 713 (733)
T TIGR01243 680 PAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPS 713 (733)
T ss_pred ccchhhhcccccccccCcccHHHHHHHHHHcCCC
Confidence 1268999999999876543
No 27
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=3.8e-38 Score=360.05 Aligned_cols=244 Identities=27% Similarity=0.444 Sum_probs=215.3
Q ss_pred CCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHH
Q 003476 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (816)
Q Consensus 326 ~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~~ 405 (816)
.+.++|+||+|++.+|++|++....+ +..+...|..+|+|+|||||||||||++||++|+++++||+.++++.+...|
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 35789999999999999999866543 2345678999999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCC
Q 003476 406 VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 485 (816)
Q Consensus 406 vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LD 485 (816)
+|.++.+++++|+.|+..+||||||||||.+...++.. +......+++++++..|+. .+.+|+||||||+++.||
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~---~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld 374 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK---GDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLP 374 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC---CCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCC
Confidence 99999999999999999999999999999988654321 2344567889999999984 456799999999999999
Q ss_pred cccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccH
Q 003476 486 PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEK 565 (816)
Q Consensus 486 pALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~~~~It~ 565 (816)
++++|+||||+.++|+.|+.++|.+||+.|+.+.......+.+++.+|..|.||||+||+++|++|+..|..++ ..++.
T Consensus 375 ~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~-~~lt~ 453 (489)
T CHL00195 375 LEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK-REFTT 453 (489)
T ss_pred HHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC-CCcCH
Confidence 99999999999999999999999999999998754333457899999999999999999999999999998766 46899
Q ss_pred HHHHHHHHHHHc
Q 003476 566 IDFIHAVERSIA 577 (816)
Q Consensus 566 ~d~~~Al~r~i~ 577 (816)
+||..|+.+...
T Consensus 454 ~dl~~a~~~~~P 465 (489)
T CHL00195 454 DDILLALKQFIP 465 (489)
T ss_pred HHHHHHHHhcCC
Confidence 999999987653
No 28
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=2.8e-37 Score=342.76 Aligned_cols=249 Identities=50% Similarity=0.774 Sum_probs=229.6
Q ss_pred cCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 003476 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (816)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiV~~-Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~ 402 (816)
...|.++|+||+|+++++++|++.+.. +.+++.|..+|..+|+|+||+||||||||++|+++|++++.+|+.+.++++.
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 356889999999999999999999876 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCC
Q 003476 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (816)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd 482 (816)
..|.|.+...++.+|+.++...||||||||+|.++..+.+.. ...+.+...++.+++.+++++....++.||+|||+++
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~-~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~ 272 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSG-TSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPD 272 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCC-CCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh
Confidence 999999999999999999999999999999999987765432 2335566788999999999988778999999999999
Q ss_pred CCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCcc
Q 003476 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (816)
Q Consensus 483 ~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~~~~ 562 (816)
.+|++++||||||+.|.|+.|+.++|.+|++.++.+. .+..++++..++..|.||+|+||.++|++|+..|.++++..
T Consensus 273 ~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~--~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~ 350 (364)
T TIGR01242 273 ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKM--KLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDY 350 (364)
T ss_pred hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcC--CCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999999999998664 55677899999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHH
Q 003476 563 VEKIDFIHAVERS 575 (816)
Q Consensus 563 It~~d~~~Al~r~ 575 (816)
|+.+||..|++++
T Consensus 351 i~~~d~~~a~~~~ 363 (364)
T TIGR01242 351 VTMDDFIKAVEKV 363 (364)
T ss_pred cCHHHHHHHHHHh
Confidence 9999999999875
No 29
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-38 Score=331.47 Aligned_cols=250 Identities=42% Similarity=0.670 Sum_probs=233.0
Q ss_pred cCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 003476 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (816)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiV~~-Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~ 402 (816)
+....++|+++.|.-+...++++.++. +.+|..|.++|+.+|+|++||||||||||++|+++|..+|++|+.++.+.+.
T Consensus 124 e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv 203 (388)
T KOG0651|consen 124 EDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALV 203 (388)
T ss_pred cCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhh
Confidence 344578999999999999999999888 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCC
Q 003476 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (816)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd 482 (816)
+.|.|+.++.+|+.|..|+...|||||+||||+++..+-. .....+.+..++|..|+++||+|+....|-+|+|||+|+
T Consensus 204 ~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~s-e~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpd 282 (388)
T KOG0651|consen 204 DKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFS-EGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPD 282 (388)
T ss_pred hhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEec-cccchhHHHHHHHHHHHHhhccchhcccccEEEecCCcc
Confidence 9999999999999999999999999999999999988733 234567788999999999999999999999999999999
Q ss_pred CCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCcc
Q 003476 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (816)
Q Consensus 483 ~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~~~~ 562 (816)
.|||+|+||||+|+.+.+++|+...|..|++.|.+. +....++|.+.+.+..+||.|+|+++.|.||-..|.+..+..
T Consensus 283 tLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~--i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~ 360 (388)
T KOG0651|consen 283 TLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQP--IDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDE 360 (388)
T ss_pred ccchhhcCCccccceeccCCcchhhceeeEeecccc--ccccccccHHHHHHHHhccChHHHhhhcccccccccchhhHH
Confidence 999999999999999999999999999999999865 345567889999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHH
Q 003476 563 VEKIDFIHAVERSI 576 (816)
Q Consensus 563 It~~d~~~Al~r~i 576 (816)
+-++||..++.++-
T Consensus 361 vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 361 VLHEDFMKLVRKQA 374 (388)
T ss_pred HhHHHHHHHHHHHH
Confidence 99999999987764
No 30
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-38 Score=330.19 Aligned_cols=227 Identities=37% Similarity=0.626 Sum_probs=204.5
Q ss_pred cCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 003476 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (816)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiV~~-Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~ 402 (816)
.+.|+|.|+||+|++.+|+.|+|.|-. ++-|+.|. -+..|.+|+||||||||||++||+|+|.|++-.||+++.++++
T Consensus 125 ~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFt-GkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLv 203 (439)
T KOG0739|consen 125 REKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFT-GKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 203 (439)
T ss_pred ccCCCCchhhhccchhHHHHHHhheeecccchhhhc-CCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHH
Confidence 456899999999999999999998876 77777654 3556789999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCC-CCcEEEEEEcCCC
Q 003476 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS-NSAVIVLGATNRS 481 (816)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~-~~~ViVIaATN~p 481 (816)
++|+|++++.++.+|+.|+.+.|+||||||||.++..|+. ..++..+++-..||.+|.|... +.+|+|++|||-|
T Consensus 204 SKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~e----nEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiP 279 (439)
T KOG0739|consen 204 SKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSE----NESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIP 279 (439)
T ss_pred HHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCC----CchHHHHHHHHHHHHhhhccccCCCceEEEecCCCc
Confidence 9999999999999999999999999999999999988864 3556677888999999999865 5789999999999
Q ss_pred CCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 003476 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (816)
Q Consensus 482 d~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~ 558 (816)
+.||.|++| ||++.|+|++|+...|..+++.|+.+....+ .+.|+..|+++|+||||+||.-+|+.|.+.-.|.
T Consensus 280 w~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~L-T~~d~~eL~~kTeGySGsDisivVrDalmePvRk 353 (439)
T KOG0739|consen 280 WVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVL-TEQDFKELARKTEGYSGSDISIVVRDALMEPVRK 353 (439)
T ss_pred hhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCcccc-chhhHHHHHhhcCCCCcCceEEEehhhhhhhHHH
Confidence 999999999 9999999999999999999999998765444 3558999999999999999999999888777653
No 31
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-37 Score=330.76 Aligned_cols=227 Identities=41% Similarity=0.633 Sum_probs=207.6
Q ss_pred cCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhC-CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhh
Q 003476 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLG-ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (816)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiV~~-Lk~p~~~~~lg-~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~ 401 (816)
...-.|+|+||.|++++|+.|++.|-. ++.|+.|..-+ .++|+||||+||||||||++|+|+|.++|.+|+.++++.+
T Consensus 84 p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~l 163 (386)
T KOG0737|consen 84 PSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNL 163 (386)
T ss_pred hhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeecccc
Confidence 345579999999999999999998888 89999886333 4689999999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCc--EEEEEEcC
Q 003476 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSA--VIVLGATN 479 (816)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~--ViVIaATN 479 (816)
.++|.|++.+.++.+|..|.+.+||||||||+|.+.+.|+ ...++.....-+++....||+.++.+ |+|+||||
T Consensus 164 t~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~----s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATN 239 (386)
T KOG0737|consen 164 TSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR----STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATN 239 (386)
T ss_pred chhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc----cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCC
Confidence 9999999999999999999999999999999999998884 24566667778899999999988765 99999999
Q ss_pred CCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 003476 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (816)
Q Consensus 480 ~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~ 558 (816)
+|..||.|++| |+.+.++|+.|+..+|.+||+..+++. ++.+++|+..+|..|.||||.||.++|..|+....|+
T Consensus 240 RP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e--~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire 314 (386)
T KOG0737|consen 240 RPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKE--KLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRE 314 (386)
T ss_pred CCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhccc--ccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHH
Confidence 99999999999 999999999999999999999999876 4578999999999999999999999999999888764
No 32
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=1.6e-35 Score=338.58 Aligned_cols=255 Identities=36% Similarity=0.590 Sum_probs=210.9
Q ss_pred cccCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc--------
Q 003476 322 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------- 392 (816)
Q Consensus 322 ~~~~~~~vtf~DV~G~ee~K~~L~eiV~~-Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvp-------- 392 (816)
+.+..|.++|+||+|++++++++++.+.. +.+++.|..+|..+|+|+|||||||||||++|+++|++++.+
T Consensus 172 ~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~ 251 (512)
T TIGR03689 172 VLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDK 251 (512)
T ss_pred eeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCc
Confidence 34667899999999999999999998877 889999999999999999999999999999999999998654
Q ss_pred --EEEeechhhHHHHhhcchHHHHHHHHHHHhc----CCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCC
Q 003476 393 --FISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF 466 (816)
Q Consensus 393 --fi~is~s~~~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~ 466 (816)
|+.++++++...|+|.++..++.+|+.|+.. .||||||||+|+++..|+.+ ..++....++++||.+||++
T Consensus 252 ~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~---~s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 252 SYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSG---VSSDVETTVVPQLLSELDGV 328 (512)
T ss_pred eeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCC---ccchHHHHHHHHHHHHhccc
Confidence 6778888999999999999999999998864 69999999999999877532 23444567889999999999
Q ss_pred CCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccc---------cCHHHHHh---
Q 003476 467 DSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKD---------IDLGDIAS--- 534 (816)
Q Consensus 467 ~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~d---------vdl~~LA~--- 534 (816)
....+++||+|||+++.||||++||||||++|+|++|+.++|.+||+.++.. .+++..+ .++..++.
T Consensus 329 ~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~-~l~l~~~l~~~~g~~~a~~~al~~~av 407 (512)
T TIGR03689 329 ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD-SLPLDADLAEFDGDREATAAALIQRAV 407 (512)
T ss_pred ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc-cCCchHHHHHhcCCCHHHHHHHHHHHH
Confidence 9888999999999999999999999999999999999999999999999875 2444211 11122211
Q ss_pred --------------------------hCCCCCHHHHHHHHHHHHHHHHHh----CCccccHHHHHHHHHHHHcchh
Q 003476 535 --------------------------MTTGFTGADLANLVNEAALLAGRL----NKVVVEKIDFIHAVERSIAGIE 580 (816)
Q Consensus 535 --------------------------~t~G~SgaDL~~LvneAa~~A~r~----~~~~It~~d~~~Al~r~i~g~e 580 (816)
.++.+||++|+++|.+|...|.++ +...|+.+|+..|+......-+
T Consensus 408 ~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~~~ 483 (512)
T TIGR03689 408 DHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRESE 483 (512)
T ss_pred HHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhcccc
Confidence 245677888888888887777654 3456778888888877654433
No 33
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-32 Score=311.68 Aligned_cols=237 Identities=44% Similarity=0.665 Sum_probs=220.7
Q ss_pred CccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHH
Q 003476 327 DTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (816)
Q Consensus 327 ~~vtf~DV~G~ee~K~~L~eiV~~-Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~~ 405 (816)
+.++ +++.|.......+++.+.+ +.++..|...|.++|+|+|+|||||||||.+++++|++.++.++.+++++++..|
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 6677 8999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHhcC-CEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCC
Q 003476 406 VGMGASRVRDLFARAKKEA-PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL 484 (816)
Q Consensus 406 vG~~~~~vr~lF~~A~~~a-P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~L 484 (816)
.|++++.+|..|+.|.+.+ |+||||||||+++++|... ++...++..+|++.||+..+..+++||++||+|+.|
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~-----~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sl 333 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGA-----DDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSL 333 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCccccc-----chHHHHHHHHHHHHHhhCcCcCcEEEEEecCCcccc
Confidence 9999999999999999999 9999999999999987542 224568899999999999989999999999999999
Q ss_pred CcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCcccc
Q 003476 485 DPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVE 564 (816)
Q Consensus 485 DpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~~~~It 564 (816)
|++++| ||||+.+.+..|+..+|.+|++.+..+.+ +.+++++..+|..|.||.|+||..+|++|++.+.++ +
T Consensus 334 d~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~--~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~ 405 (693)
T KOG0730|consen 334 DPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMN--LLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----T 405 (693)
T ss_pred Chhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcC--CcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----h
Confidence 999999 99999999999999999999999998754 457899999999999999999999999999999887 7
Q ss_pred HHHHHHHHHHHHc
Q 003476 565 KIDFIHAVERSIA 577 (816)
Q Consensus 565 ~~d~~~Al~r~i~ 577 (816)
+++|..|...+..
T Consensus 406 ~~~~~~A~~~i~p 418 (693)
T KOG0730|consen 406 LEIFQEALMGIRP 418 (693)
T ss_pred HHHHHHHHhcCCc
Confidence 8889888876543
No 34
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-33 Score=306.93 Aligned_cols=251 Identities=34% Similarity=0.571 Sum_probs=212.6
Q ss_pred CCCcccccc--ccCChHHHHHH-H-HHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC-cEEEeech
Q 003476 325 QGDTITFAD--VAGVDEAKEEL-E-EIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-PFISCSAS 399 (816)
Q Consensus 325 ~~~~vtf~D--V~G~ee~K~~L-~-eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgv-pfi~is~s 399 (816)
-.|...|++ |.|++..-..+ + .+....-.|+.-.++|...-+|+|||||||||||++||.|..-++. +--.+++.
T Consensus 212 i~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGP 291 (744)
T KOG0741|consen 212 INPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGP 291 (744)
T ss_pred cCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcH
Confidence 456777876 46776544433 2 2344467888889999999999999999999999999999998864 55668999
Q ss_pred hhHHHHhhcchHHHHHHHHHHHhc--------CCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCc
Q 003476 400 EFVELYVGMGASRVRDLFARAKKE--------APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSA 471 (816)
Q Consensus 400 ~~~~~~vG~~~~~vr~lF~~A~~~--------aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ 471 (816)
+..++|+|+++..+|.+|..|... .=.||++||||+++++|+.. .++.....+++||||.-|||.+.-.+
T Consensus 292 eIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~--~g~TGVhD~VVNQLLsKmDGVeqLNN 369 (744)
T KOG0741|consen 292 EILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSM--AGSTGVHDTVVNQLLSKMDGVEQLNN 369 (744)
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCC--CCCCCccHHHHHHHHHhcccHHhhhc
Confidence 999999999999999999998642 12399999999999999754 33445567899999999999999999
Q ss_pred EEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhc--CCCCCccccCHHHHHhhCCCCCHHHHHHHHH
Q 003476 472 VIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK--KELPLAKDIDLGDIASMTTGFTGADLANLVN 549 (816)
Q Consensus 472 ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~--~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lvn 549 (816)
|+||+-|||.|.||+||+|||||..++++.+||.+.|.+||+.|..+ .+-.+..|+|+++||.+|..||||+|+.+|+
T Consensus 370 ILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVk 449 (744)
T KOG0741|consen 370 ILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVK 449 (744)
T ss_pred EEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999865 2234789999999999999999999999999
Q ss_pred HHHHHHHHh---------------CCccccHHHHHHHHHHHHc
Q 003476 550 EAALLAGRL---------------NKVVVEKIDFIHAVERSIA 577 (816)
Q Consensus 550 eAa~~A~r~---------------~~~~It~~d~~~Al~r~i~ 577 (816)
.|.-.|..+ ..-.|+++||..|++.+-.
T Consensus 450 sA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkP 492 (744)
T KOG0741|consen 450 SAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKP 492 (744)
T ss_pred HHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCc
Confidence 998777644 1245889999999997643
No 35
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-32 Score=326.61 Aligned_cols=248 Identities=41% Similarity=0.643 Sum_probs=220.8
Q ss_pred CCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEeech
Q 003476 326 GDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSAS 399 (816)
Q Consensus 326 ~~~vtf~DV~G~ee~K~~L~eiV~~-Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el-----gvpfi~is~s 399 (816)
...++|++|+|++.++..|+|.|.+ |..|+.|..+++.+|+||||+||||||||+.|+|+|..+ .+-|+.-.++
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 4579999999999999999999998 899999999999999999999999999999999999987 4778888999
Q ss_pred hhHHHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcC
Q 003476 400 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (816)
Q Consensus 400 ~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN 479 (816)
+..++|+|+.+..++.+|+.|+...|+|||+||||-+.+.|... .......++..||..|||...++.|+||+|||
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSsk----qEqih~SIvSTLLaLmdGldsRgqVvvigATn 414 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSK----QEQIHASIVSTLLALMDGLDSRGQVVVIGATN 414 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccch----HHHhhhhHHHHHHHhccCCCCCCceEEEcccC
Confidence 99999999999999999999999999999999999999887532 34455678899999999999999999999999
Q ss_pred CCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Q 003476 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN 559 (816)
Q Consensus 480 ~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~ 559 (816)
+|+.+||||+||||||+.++|++|+.+.|.+|+..|-++..-++ ...-+..+|..|.||.|+||+.+|.+|++.+.++.
T Consensus 415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i-~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~ 493 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPI-SRELLLWLAEETSGYGGADLKALCTEAALIALRRS 493 (1080)
T ss_pred CccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCC-CHHHHHHHHHhccccchHHHHHHHHHHhhhhhccc
Confidence 99999999999999999999999999999999999988765333 23357889999999999999999999999998763
Q ss_pred C----------------ccccHHHHHHHHHHHHcc
Q 003476 560 K----------------VVVEKIDFIHAVERSIAG 578 (816)
Q Consensus 560 ~----------------~~It~~d~~~Al~r~i~g 578 (816)
- ..|+..||..|+.+....
T Consensus 494 ~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps 528 (1080)
T KOG0732|consen 494 FPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPS 528 (1080)
T ss_pred cCeeecccccccccchhhhhhhHhhhhhhhccCCC
Confidence 2 235667777777665543
No 36
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=6.3e-32 Score=294.09 Aligned_cols=260 Identities=17% Similarity=0.186 Sum_probs=191.0
Q ss_pred Cccccccc-cCChHHHHHHHHHHHHh-cChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 003476 327 DTITFADV-AGVDEAKEELEEIVEFL-RSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (816)
Q Consensus 327 ~~vtf~DV-~G~ee~K~~L~eiV~~L-k~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~ 404 (816)
..-+|+++ .|+--++.-+..++-.+ |+- ....|.++|++++||||||||||++|+++|+++|++|+.++++++.++
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~--l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk 187 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNF--LALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE 187 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhh--hhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC
Confidence 34567777 66666666665554332 221 123678999999999999999999999999999999999999999999
Q ss_pred HhhcchHHHHHHHHHHHh-----cCCEEEEEcCccchhhccCCccccccchHHHHHH-HHHHhhccCC------------
Q 003476 405 YVGMGASRVRDLFARAKK-----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL-NQLLTEMDGF------------ 466 (816)
Q Consensus 405 ~vG~~~~~vr~lF~~A~~-----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L-n~LL~emDg~------------ 466 (816)
|+|++++.+|++|..|+. .+||||||||||++++.++.. ......+.+ .+|+++||+.
T Consensus 188 ~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~----~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~ 263 (413)
T PLN00020 188 NAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTT----QYTVNNQMVNGTLMNIADNPTNVSLGGDWREK 263 (413)
T ss_pred cCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCC----CcchHHHHHHHHHHHHhcCCcccccccccccc
Confidence 999999999999999985 469999999999999887532 222334554 6889888753
Q ss_pred CCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCC----CCHH
Q 003476 467 DSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG----FTGA 542 (816)
Q Consensus 467 ~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G----~Sga 542 (816)
+...+|+||+|||+|+.|||+|+||||||+.+ ..|+.++|.+||+.|+++.++ + ..++..|+..++| |.||
T Consensus 264 ~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l--~-~~dv~~Lv~~f~gq~~Df~GA 338 (413)
T PLN00020 264 EEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGV--S-REDVVKLVDTFPGQPLDFFGA 338 (413)
T ss_pred ccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCC--C-HHHHHHHHHcCCCCCchhhhH
Confidence 34577999999999999999999999999865 589999999999999988654 2 4678888888877 5666
Q ss_pred HHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHHcchhhhhhhhccchhhHHHhhhcccceee
Q 003476 543 DLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVG 605 (816)
Q Consensus 543 DL~~LvneAa~~A~r~~~~~It~~d~~~Al~r~i~g~e~k~~~l~~~ek~~iA~HEaGHAvv~ 605 (816)
--..+..++...-..+- ..+. +.+.+..-.++...+..-...+-..-|+||.++.
T Consensus 339 lrar~yd~~v~~~i~~~----g~~~----~~~~l~~~~~~~p~f~~~~~t~~~l~~~g~~l~~ 393 (413)
T PLN00020 339 LRARVYDDEVRKWIAEV----GVEN----LGKKLVNSKKGPPTFEPPKMTLEKLLEYGNMLVR 393 (413)
T ss_pred HHHHHHHHHHHHHHHHh----hHHH----HHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 66666666655443321 1111 1122212112223333334445556688888775
No 37
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1e-31 Score=322.94 Aligned_cols=245 Identities=50% Similarity=0.803 Sum_probs=221.2
Q ss_pred CCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 003476 326 GDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (816)
Q Consensus 326 ~~~vtf~DV~G~ee~K~~L~eiV~~-Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~ 404 (816)
.+.++|+||+|++++++.+++++.. +++|+.|..+|..+|+|+|||||||||||+||+++|++++.+|+.++++++...
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 4679999999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred HhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCC
Q 003476 405 YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL 484 (816)
Q Consensus 405 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~L 484 (816)
|.|.....++.+|+.|....|+||||||||.+...++.. ..+....++++|+..|+++..+..++||++||+++.|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~----~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~l 327 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEV----TGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDAL 327 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCC----cchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhc
Confidence 999999999999999999999999999999999776532 2233356889999999999888899999999999999
Q ss_pred CcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC-----
Q 003476 485 DPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN----- 559 (816)
Q Consensus 485 DpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~----- 559 (816)
|++++|+||||+.+.++.|+.++|.+||+.+.+. .++..+++++.++..+.||+++|+..++++|+..+.++.
T Consensus 328 d~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~--~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~ 405 (733)
T TIGR01243 328 DPALRRPGRFDREIVIRVPDKRARKEILKVHTRN--MPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGK 405 (733)
T ss_pred CHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC--CCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999988865 466778899999999999999999999999998886642
Q ss_pred --------------CccccHHHHHHHHHHHH
Q 003476 560 --------------KVVVEKIDFIHAVERSI 576 (816)
Q Consensus 560 --------------~~~It~~d~~~Al~r~i 576 (816)
...++.+||..|+..+.
T Consensus 406 ~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ 436 (733)
T TIGR01243 406 INFEAEEIPAEVLKELKVTMKDFMEALKMVE 436 (733)
T ss_pred cccccccccchhcccccccHHHHHHHHhhcc
Confidence 12477889999987654
No 38
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.7e-30 Score=287.09 Aligned_cols=227 Identities=38% Similarity=0.592 Sum_probs=198.8
Q ss_pred cCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 003476 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (816)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiV~~-Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~ 402 (816)
...+.|.|+|++|++.+|+.+.+++-+ +..|..|..+ ..+++|+||.||||||||+|++|||.|+++.|+.++++.+.
T Consensus 145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLt 223 (428)
T KOG0740|consen 145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLT 223 (428)
T ss_pred ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhh
Confidence 445679999999999999999999998 5557776542 35678999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCC--CCcEEEEEEcCC
Q 003476 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS--NSAVIVLGATNR 480 (816)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~--~~~ViVIaATN~ 480 (816)
++|+|.+++.+|.+|+.|+..+|+||||||||.+..+|... .++...+...++|..+++... +++|+||+|||+
T Consensus 224 sK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~----e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~ 299 (428)
T KOG0740|consen 224 SKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDN----EHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNR 299 (428)
T ss_pred hhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCc----ccccchhhhhHHHhhhccccCCCCCeEEEEecCCC
Confidence 99999999999999999999999999999999999888542 445556777788888877643 568999999999
Q ss_pred CCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 003476 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (816)
Q Consensus 481 pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~ 558 (816)
|+.+|.+++| ||.+.++|++|+.+.|..+++..+.+... ...+.+++.|++.|+|||+.||.++|.+|+.--.+.
T Consensus 300 P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~-~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~ 374 (428)
T KOG0740|consen 300 PWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPN-GLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRE 374 (428)
T ss_pred chHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhh
Confidence 9999999999 99999999999999999999999987633 334568999999999999999999999998654443
No 39
>CHL00181 cbbX CbbX; Provisional
Probab=99.88 E-value=1.4e-21 Score=211.13 Aligned_cols=211 Identities=20% Similarity=0.291 Sum_probs=164.7
Q ss_pred cccccCChHHHHHHHHHHHHhcChhHHhhhCCCCC---CeEEEEcCCCCcHHHHHHHHHHhc-------CCcEEEeechh
Q 003476 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPP---RGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISCSASE 400 (816)
Q Consensus 331 f~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~p---kGVLL~GPPGTGKT~LAkALA~el-------gvpfi~is~s~ 400 (816)
+++++|++++|+++++++.++..++.+.+.|..+| .++||+||||||||++|+++|..+ ..+++.+++++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 35899999999999999998877777778887654 348999999999999999999875 23799999999
Q ss_pred hHHHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCC
Q 003476 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (816)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~ 480 (816)
+...|+|..+..++.+|+.|. ++||||||+|.+...++ .++.....++.|+..|+.. ..+++||++++.
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~------~~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~ 170 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN------ERDYGSEAIEILLQVMENQ--RDDLVVIFAGYK 170 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC------ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCc
Confidence 999999998888888888874 46999999999965432 1223356778888888743 356788888764
Q ss_pred CC-----CCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHH----hh--CCCCC-HHHHHHHH
Q 003476 481 SD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIA----SM--TTGFT-GADLANLV 548 (816)
Q Consensus 481 pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA----~~--t~G~S-gaDL~~Lv 548 (816)
.. .++|+|.+ ||+.+|.|+.++.+++.+|++.++.+.+..+.++. ...+. +. ...|. ++++++++
T Consensus 171 ~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~-~~~L~~~i~~~~~~~~~GNaR~vrn~v 247 (287)
T CHL00181 171 DRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEA-EKALLDYIKKRMEQPLFANARSVRNAL 247 (287)
T ss_pred HHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 32 34699998 99999999999999999999999998776666554 22222 21 23344 89999999
Q ss_pred HHHHHHH
Q 003476 549 NEAALLA 555 (816)
Q Consensus 549 neAa~~A 555 (816)
.+|...-
T Consensus 248 e~~~~~~ 254 (287)
T CHL00181 248 DRARMRQ 254 (287)
T ss_pred HHHHHHH
Confidence 9876544
No 40
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2e-21 Score=210.84 Aligned_cols=238 Identities=26% Similarity=0.375 Sum_probs=184.0
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHHh
Q 003476 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (816)
Q Consensus 327 ~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~~v 406 (816)
.+-.|++|+-....+..++++...-.|.+. ...+-++||||||||||||++||-||...|..+-.+.+.+..-. -
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaNTK~----h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G 424 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIATANTKK----HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-G 424 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHhccccc----ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-c
Confidence 344599999999999999998877666544 34567899999999999999999999999999988888776432 2
Q ss_pred hcchHHHHHHHHHHHhcCC-EEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCC
Q 003476 407 GMGASRVRDLFARAKKEAP-SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 485 (816)
Q Consensus 407 G~~~~~vr~lF~~A~~~aP-~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LD 485 (816)
.++...+..+|+.|++... -+|||||.|++...|.. ...++..+..||.||-.-. +....++++.+||+|..+|
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnk---tymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlD 499 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNK---TYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLD 499 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhch---hhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchh
Confidence 2345678999999987654 48999999999888764 3456777889999997653 3345688889999999999
Q ss_pred cccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCC----------------------CCcc---ccCHHHHHhhCCCCC
Q 003476 486 PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKEL----------------------PLAK---DIDLGDIASMTTGFT 540 (816)
Q Consensus 486 pALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l----------------------~l~~---dvdl~~LA~~t~G~S 540 (816)
.|+-. |||..|+|++|..++|..+|..|+.++-. .+.. +-.+.+.|+.|.|||
T Consensus 500 sAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfS 577 (630)
T KOG0742|consen 500 SAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFS 577 (630)
T ss_pred HHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCc
Confidence 99988 99999999999999999999999876311 1111 112566789999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHH
Q 003476 541 GADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSI 576 (816)
Q Consensus 541 gaDL~~LvneAa~~A~r~~~~~It~~d~~~Al~r~i 576 (816)
|++|..|+---...+.-.....++...|++.++-.+
T Consensus 578 GREiakLva~vQAavYgsedcvLd~~lf~e~v~ykv 613 (630)
T KOG0742|consen 578 GREIAKLVASVQAAVYGSEDCVLDEALFDERVDYKV 613 (630)
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHH
Confidence 999999986544334444456666666666665443
No 41
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.87 E-value=3.1e-21 Score=205.30 Aligned_cols=212 Identities=21% Similarity=0.310 Sum_probs=162.4
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCC---CCeEEEEcCCCCcHHHHHHHHHHhc-------CCcEEEeech
Q 003476 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARP---PRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISCSAS 399 (816)
Q Consensus 330 tf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~---pkGVLL~GPPGTGKT~LAkALA~el-------gvpfi~is~s 399 (816)
.+++++|++++|+.+++++.+..........|... +.++||+||||||||++|+++|+.+ ..+++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 36899999999999999999987666666677653 3468999999999999999999864 2478999999
Q ss_pred hhHHHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcC
Q 003476 400 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (816)
Q Consensus 400 ~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN 479 (816)
++...|+|.....++++|+.|. ++||||||+|.|.+.. ..+.....++.|+..|+... ..+++|++++
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~-------~~~~~~~~i~~Ll~~~e~~~--~~~~vila~~ 151 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG-------EKDFGKEAIDTLVKGMEDNR--NEFVLILAGY 151 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC-------ccchHHHHHHHHHHHHhccC--CCEEEEecCC
Confidence 9999999999999999998874 4699999999996421 12223457888999888543 4466666654
Q ss_pred CC-----CCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHh---------hCCCCCHHHHH
Q 003476 480 RS-----DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIAS---------MTTGFTGADLA 545 (816)
Q Consensus 480 ~p-----d~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~---------~t~G~SgaDL~ 545 (816)
.. ..++|+|.+ ||+..|.++.++.+++.+|++.++...+..+++++ +..++. .....+++.+.
T Consensus 152 ~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a-~~~l~~~~~~~~~~~~~~~gn~R~~~ 228 (261)
T TIGR02881 152 SDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEA-KWKLREHLYKVDQLSSREFSNARYVR 228 (261)
T ss_pred cchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHH-HHHHHHHHHHHHhccCCCCchHHHHH
Confidence 32 247889988 99989999999999999999999987766665554 333322 11123678888
Q ss_pred HHHHHHHHHHH
Q 003476 546 NLVNEAALLAG 556 (816)
Q Consensus 546 ~LvneAa~~A~ 556 (816)
|++..|.....
T Consensus 229 n~~e~a~~~~~ 239 (261)
T TIGR02881 229 NIIEKAIRRQA 239 (261)
T ss_pred HHHHHHHHHHH
Confidence 88888765543
No 42
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2e-21 Score=215.43 Aligned_cols=207 Identities=29% Similarity=0.381 Sum_probs=162.3
Q ss_pred ccccccccCChHHHHHHH-HHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHHh
Q 003476 328 TITFADVAGVDEAKEELE-EIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (816)
Q Consensus 328 ~vtf~DV~G~ee~K~~L~-eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~~v 406 (816)
+-||+.|+-..+.|+++. ++.+|++..+-|++.|...-+|.|||||||||||+++.|+|++++..++.++.++..
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~---- 272 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK---- 272 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc----
Confidence 388999999999999885 577789999999999999999999999999999999999999999999888876542
Q ss_pred hcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCcccc--ccc-hHHHHHHHHHHhhccCCCCCC--cEEEEEEcCCC
Q 003476 407 GMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRI--VSN-DEREQTLNQLLTEMDGFDSNS--AVIVLGATNRS 481 (816)
Q Consensus 407 G~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~--~~~-~e~~~~Ln~LL~emDg~~~~~--~ViVIaATN~p 481 (816)
.... ++.++..+.. .+||+|++||+-..-+...... ... ....-++..||+.+||.-+.. --|||.|||++
T Consensus 273 -~n~d-Lr~LL~~t~~--kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~ 348 (457)
T KOG0743|consen 273 -LDSD-LRHLLLATPN--KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 348 (457)
T ss_pred -CcHH-HHHHHHhCCC--CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCCh
Confidence 2223 7777766543 4799999999975433221110 111 123468999999999997765 57889999999
Q ss_pred CCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCC-CCCccccCHHHHHhhCC--CCCHHHHHHH
Q 003476 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKE-LPLAKDIDLGDIASMTT--GFTGADLANL 547 (816)
Q Consensus 482 d~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~-l~l~~dvdl~~LA~~t~--G~SgaDL~~L 547 (816)
+.|||||+||||.|.+|++..-+..+-..+++.++.-.. .++ +.++.+... -.||||+...
T Consensus 349 EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L-----~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 349 EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRL-----FDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred hhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcch-----hHHHHHHhhcCccCHHHHHHH
Confidence 999999999999999999999999999999999986532 222 333433332 3589998644
No 43
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.86 E-value=4.4e-21 Score=206.90 Aligned_cols=210 Identities=20% Similarity=0.306 Sum_probs=165.4
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCCC---CCeEEEEcCCCCcHHHHHHHHHHhcC-------CcEEEeechhhH
Q 003476 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARP---PRGVLLVGLPGTGKTLLAKAVAGEAE-------VPFISCSASEFV 402 (816)
Q Consensus 333 DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~---pkGVLL~GPPGTGKT~LAkALA~elg-------vpfi~is~s~~~ 402 (816)
+++|++++|+++.+++.++..++.+.+.|... ..++||+||||||||++|+++|..+. -+|+.++++++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 69999999999999999988888888888764 34899999999999999999988762 379999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCC-
Q 003476 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS- 481 (816)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~p- 481 (816)
..+.|..+..++++|++|. ++||||||+|.+...++ ..+......+.|+..|+.. ..+++||++++..
T Consensus 103 ~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~------~~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDN------ERDYGQEAIEILLQVMENQ--RDDLVVILAGYKDR 171 (284)
T ss_pred HhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCC------ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHH
Confidence 9999998888899998874 46999999999864332 1223345677888888743 3568888887643
Q ss_pred -C---CCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhh-------CCCCCHHHHHHHHHH
Q 003476 482 -D---VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM-------TTGFTGADLANLVNE 550 (816)
Q Consensus 482 -d---~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~-------t~G~SgaDL~~Lvne 550 (816)
+ .++|+|.+ ||+..|.|+.++.+++.+|++.++.+.+..+.++. +..+... ..--++++++|++..
T Consensus 172 ~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a-~~~L~~~l~~~~~~~~~GN~R~lrn~ve~ 248 (284)
T TIGR02880 172 MDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEA-EEAFADYIALRRTQPHFANARSIRNAIDR 248 (284)
T ss_pred HHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHH-HHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 2 35899998 99999999999999999999999988665555443 3334332 222368999999998
Q ss_pred HHHHHH
Q 003476 551 AALLAG 556 (816)
Q Consensus 551 Aa~~A~ 556 (816)
|.....
T Consensus 249 ~~~~~~ 254 (284)
T TIGR02880 249 ARLRQA 254 (284)
T ss_pred HHHHHH
Confidence 875544
No 44
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.86 E-value=2.1e-21 Score=182.15 Aligned_cols=130 Identities=45% Similarity=0.671 Sum_probs=117.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHHhhcchHHHHHHHHHHHhcC-CEEEEEcCccchhhccCCcccc
Q 003476 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEA-PSIIFIDEIDAVAKSRDGRFRI 446 (816)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~a-P~ILfIDEIDaL~~~r~~~~~~ 446 (816)
|||+||||||||++|+++|..++.+++.++++++.+.+.+.....++++|.+++... ||||||||+|.+....+ .
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~----~ 76 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ----P 76 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS----T
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccc----c
Confidence 699999999999999999999999999999999998888999999999999999888 99999999999998762 2
Q ss_pred ccchHHHHHHHHHHhhccCCCCC-CcEEEEEEcCCCCCCCcccCCCCcccceEEecC
Q 003476 447 VSNDEREQTLNQLLTEMDGFDSN-SAVIVLGATNRSDVLDPALRRPGRFDRVVMVET 502 (816)
Q Consensus 447 ~~~~e~~~~Ln~LL~emDg~~~~-~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~ 502 (816)
..+......+++|+..++..... .+++||++||.++.++++++| +||++.|++++
T Consensus 77 ~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 77 SSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 34566778899999999987765 569999999999999999998 89999999874
No 45
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=6.9e-20 Score=211.24 Aligned_cols=213 Identities=23% Similarity=0.319 Sum_probs=163.2
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH-----
Q 003476 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE----- 403 (816)
Q Consensus 329 vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~----- 403 (816)
+==.|..|++++|+++.|.+.-.+.... ....-+||+||||+|||+|+++||..+|.+|+.++...+.+
T Consensus 320 iLd~dHYGLekVKeRIlEyLAV~~l~~~------~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIR 393 (782)
T COG0466 320 ILDKDHYGLEKVKERILEYLAVQKLTKK------LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIR 393 (782)
T ss_pred HhcccccCchhHHHHHHHHHHHHHHhcc------CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhc
Confidence 3346899999999988887765433221 22345899999999999999999999999999999876654
Q ss_pred ----HHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCc----cccccchHHHHHHHHHHhhccCCCCCCcEEEE
Q 003476 404 ----LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGR----FRIVSNDEREQTLNQLLTEMDGFDSNSAVIVL 475 (816)
Q Consensus 404 ----~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~----~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVI 475 (816)
.|+|....++-+.+++|...+| +++|||||.++.+..+. +.+..+++++..++.-+-+++ |+ -+.|++|
T Consensus 394 GHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~-yD-LS~VmFi 470 (782)
T COG0466 394 GHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVP-YD-LSKVMFI 470 (782)
T ss_pred cccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCc-cc-hhheEEE
Confidence 6999999999999999999999 99999999999776543 334555666555555554444 22 3679999
Q ss_pred EEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 003476 476 GATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLA 555 (816)
Q Consensus 476 aATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A 555 (816)
||+|..+.++.+|+. |+. .|.+.-++.+|..+|.+.|+-.+ .+.-..|....--++...|..+++...+.|
T Consensus 471 aTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk------~~~~~gL~~~el~i~d~ai~~iI~~YTREA 541 (782)
T COG0466 471 ATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPK------QLKEHGLKKGELTITDEAIKDIIRYYTREA 541 (782)
T ss_pred eecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchH------HHHHcCCCccceeecHHHHHHHHHHHhHhh
Confidence 999999999999998 876 89999999999999999997432 111122222223467778888888888777
Q ss_pred HHhC
Q 003476 556 GRLN 559 (816)
Q Consensus 556 ~r~~ 559 (816)
.-++
T Consensus 542 GVR~ 545 (782)
T COG0466 542 GVRN 545 (782)
T ss_pred hhhH
Confidence 6554
No 46
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.81 E-value=6.6e-19 Score=193.32 Aligned_cols=219 Identities=23% Similarity=0.264 Sum_probs=165.2
Q ss_pred CCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 003476 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (816)
Q Consensus 325 ~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~ 404 (816)
..++.+|+|++|++++++.|..++...+.+ ..++.++||+||||||||++|+++|++++..+..++++.+.
T Consensus 18 ~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~-- 88 (328)
T PRK00080 18 SLRPKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE-- 88 (328)
T ss_pred hcCcCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc--
Confidence 345678999999999999999888654332 24567899999999999999999999999998877765332
Q ss_pred HhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhh------ccC-CC------CCCc
Q 003476 405 YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE------MDG-FD------SNSA 471 (816)
Q Consensus 405 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e------mDg-~~------~~~~ 471 (816)
....+..++... ..++||||||||.+.... .+.+..++.. ++. .. .-.+
T Consensus 89 ----~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~~------------~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 89 ----KPGDLAAILTNL--EEGDVLFIDEIHRLSPVV------------EEILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred ----ChHHHHHHHHhc--ccCCEEEEecHhhcchHH------------HHHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 122344444433 346799999999985321 1122222221 111 00 1134
Q ss_pred EEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHH
Q 003476 472 VIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEA 551 (816)
Q Consensus 472 ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneA 551 (816)
+.+|++||++..++++|++ ||+..+.++.|+.+++.+|++..+...++.++++. ++.|+..+.| +++.+.++++.+
T Consensus 151 ~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~-~~~ia~~~~G-~pR~a~~~l~~~ 226 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEG-ALEIARRSRG-TPRIANRLLRRV 226 (328)
T ss_pred ceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHH-HHHHHHHcCC-CchHHHHHHHHH
Confidence 7889999999999999987 99989999999999999999999988777776553 7889999988 578999999988
Q ss_pred HHHHHHhCCccccHHHHHHHHHH
Q 003476 552 ALLAGRLNKVVVEKIDFIHAVER 574 (816)
Q Consensus 552 a~~A~r~~~~~It~~d~~~Al~r 574 (816)
...|...+...|+.+++..+++.
T Consensus 227 ~~~a~~~~~~~I~~~~v~~~l~~ 249 (328)
T PRK00080 227 RDFAQVKGDGVITKEIADKALDM 249 (328)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHH
Confidence 88887766778999999998865
No 47
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.80 E-value=1.2e-18 Score=188.52 Aligned_cols=211 Identities=23% Similarity=0.321 Sum_probs=157.7
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHHhhcc
Q 003476 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMG 409 (816)
Q Consensus 330 tf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~~vG~~ 409 (816)
+|+|++|++++++.|..++...+.. ...+.+++|+||||||||+||+++|++++.++..++++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 6999999999999998887643321 235677999999999999999999999999887766543211
Q ss_pred hHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCC----------------CCCcEE
Q 003476 410 ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD----------------SNSAVI 473 (816)
Q Consensus 410 ~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~----------------~~~~Vi 473 (816)
...+...+... ..+.||||||+|.+....+ +.|+..|+... ...+++
T Consensus 69 ~~~l~~~l~~~--~~~~vl~iDEi~~l~~~~~---------------e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 131 (305)
T TIGR00635 69 PGDLAAILTNL--EEGDVLFIDEIHRLSPAVE---------------ELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFT 131 (305)
T ss_pred chhHHHHHHhc--ccCCEEEEehHhhhCHHHH---------------HHhhHHHhhhheeeeeccCccccceeecCCCeE
Confidence 12233333322 3467999999999864321 11222222111 123478
Q ss_pred EEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHH
Q 003476 474 VLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAAL 553 (816)
Q Consensus 474 VIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~ 553 (816)
+|++||++..+++++++ ||...+.+++|+.+++.++++..+...++.++++ .++.+++.+.| .++.+.++++.+..
T Consensus 132 li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~-al~~ia~~~~G-~pR~~~~ll~~~~~ 207 (305)
T TIGR00635 132 LVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPE-AALEIARRSRG-TPRIANRLLRRVRD 207 (305)
T ss_pred EEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHH-HHHHHHHHhCC-CcchHHHHHHHHHH
Confidence 99999999999999988 9988899999999999999999988766665544 46788999888 56888899998887
Q ss_pred HHHHhCCccccHHHHHHHHHH
Q 003476 554 LAGRLNKVVVEKIDFIHAVER 574 (816)
Q Consensus 554 ~A~r~~~~~It~~d~~~Al~r 574 (816)
.|...+...|+.+++..++..
T Consensus 208 ~a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 208 FAQVRGQKIINRDIALKALEM 228 (305)
T ss_pred HHHHcCCCCcCHHHHHHHHHH
Confidence 777767777999999988876
No 48
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.80 E-value=3.5e-19 Score=184.06 Aligned_cols=197 Identities=25% Similarity=0.364 Sum_probs=133.2
Q ss_pred cccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhh
Q 003476 322 VSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (816)
Q Consensus 322 ~~~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~ 401 (816)
..+.-++.+|+|++|++++++.++-+++..+.. .....++|||||||+|||+||+.+|++++++|..++++.+
T Consensus 14 l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r-------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i 86 (233)
T PF05496_consen 14 LAERLRPKSLDEFIGQEHLKGNLKILIRAAKKR-------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAI 86 (233)
T ss_dssp HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCT-------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC-
T ss_pred hHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhc-------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhh
Confidence 344556789999999999999998887764431 1234579999999999999999999999999999988643
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCC--------CC----
Q 003476 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------SN---- 469 (816)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~--------~~---- 469 (816)
. ....+..++...+ ...||||||||.+.+..+ ..|+..|+.+. .+
T Consensus 87 ~------k~~dl~~il~~l~--~~~ILFIDEIHRlnk~~q---------------e~LlpamEd~~idiiiG~g~~ar~~ 143 (233)
T PF05496_consen 87 E------KAGDLAAILTNLK--EGDILFIDEIHRLNKAQQ---------------EILLPAMEDGKIDIIIGKGPNARSI 143 (233)
T ss_dssp -------SCHHHHHHHHT----TT-EEEECTCCC--HHHH---------------HHHHHHHHCSEEEEEBSSSSS-BEE
T ss_pred h------hHHHHHHHHHhcC--CCcEEEEechhhccHHHH---------------HHHHHHhccCeEEEEecccccccee
Confidence 2 1233444444433 346999999999975432 23444444331 11
Q ss_pred ----CcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHH
Q 003476 470 ----SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLA 545 (816)
Q Consensus 470 ----~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~ 545 (816)
.++.+|+||++...|.+.|+. ||.....+..++.++..+|++......++++.++ ...+||+++.| +++-..
T Consensus 144 ~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~-~~~~Ia~rsrG-tPRiAn 219 (233)
T PF05496_consen 144 RINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDED-AAEEIARRSRG-TPRIAN 219 (233)
T ss_dssp EEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HH-HHHHHHHCTTT-SHHHHH
T ss_pred eccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHH-HHHHHHHhcCC-ChHHHH
Confidence 357899999999999999988 9998889999999999999999888777766555 36789999988 788777
Q ss_pred HHHHHHH
Q 003476 546 NLVNEAA 552 (816)
Q Consensus 546 ~LvneAa 552 (816)
++++.+.
T Consensus 220 rll~rvr 226 (233)
T PF05496_consen 220 RLLRRVR 226 (233)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 7776553
No 49
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=4e-19 Score=189.05 Aligned_cols=239 Identities=23% Similarity=0.279 Sum_probs=176.9
Q ss_pred cccccCChHHHHHHHHHHHH-hcChhHHhhh-CCCCCCeEEEEcCCCCcHHHHHHHHHHhcC---------CcEEEeech
Q 003476 331 FADVAGVDEAKEELEEIVEF-LRSPDKYIRL-GARPPRGVLLVGLPGTGKTLLAKAVAGEAE---------VPFISCSAS 399 (816)
Q Consensus 331 f~DV~G~ee~K~~L~eiV~~-Lk~p~~~~~l-g~~~pkGVLL~GPPGTGKT~LAkALA~elg---------vpfi~is~s 399 (816)
|+.++--...|++|...+.. ++-.++-..- -+...+-+||+||||||||+|+||+|+.+. ..++.+++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 56667677888888776544 3322221110 023356699999999999999999999763 467899999
Q ss_pred hhHHHHhhcchHHHHHHHHHHHhcC---C--EEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEE
Q 003476 400 EFVELYVGMGASRVRDLFARAKKEA---P--SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (816)
Q Consensus 400 ~~~~~~vG~~~~~vr~lF~~A~~~a---P--~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViV 474 (816)
.+.++|.+++.+.+..+|++..... . ..++|||+++++..|.+..........-+++|++|++||.+....+|++
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvli 300 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLI 300 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEE
Confidence 9999999999999999999876531 2 2566999999998885544434445567899999999999999999999
Q ss_pred EEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcC---CCCCccc-------------cCHHHHHh-hCC
Q 003476 475 LGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK---ELPLAKD-------------IDLGDIAS-MTT 537 (816)
Q Consensus 475 IaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~---~l~l~~d-------------vdl~~LA~-~t~ 537 (816)
++|+|-.+.||.|+.. |-|-..+|.+|+...+.+|++..+... ++-+... .....++. .+.
T Consensus 301 L~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~ 378 (423)
T KOG0744|consen 301 LATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTV 378 (423)
T ss_pred EeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhc
Confidence 9999999999999998 999999999999999999999887641 2111111 11222333 358
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHH
Q 003476 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (816)
Q Consensus 538 G~SgaDL~~LvneAa~~A~r~~~~~It~~d~~~Al~ 573 (816)
|.||+.|+.+=--|... --....|+.++|..|+-
T Consensus 379 gLSGRtlrkLP~Laha~--y~~~~~v~~~~fl~al~ 412 (423)
T KOG0744|consen 379 GLSGRTLRKLPLLAHAE--YFRTFTVDLSNFLLALL 412 (423)
T ss_pred CCccchHhhhhHHHHHh--ccCCCccChHHHHHHHH
Confidence 99999998875544322 22335788888887764
No 50
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.3e-17 Score=192.56 Aligned_cols=219 Identities=47% Similarity=0.700 Sum_probs=195.0
Q ss_pred hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHHhhcchHHHHHHHHHHHhcCCEEEEE
Q 003476 351 LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFI 430 (816)
Q Consensus 351 Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfI 430 (816)
+..+..+..++..+|++++++||||||||++++++|.+ +.+++.+++.+....+.|....+.+.+|..++..+|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 45677788999999999999999999999999999999 77778899999999999999999999999999999999999
Q ss_pred cCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHH
Q 003476 431 DEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREA 510 (816)
Q Consensus 431 DEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ 510 (816)
||+|.+.+.+.. .........+.+++..|+++. ...+++++.||+++.+|+++++||||++.+.+..|+...+.+
T Consensus 83 d~~~~~~~~~~~----~~~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~e 157 (494)
T COG0464 83 DEIDALAPKRSS----DQGEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLE 157 (494)
T ss_pred chhhhcccCccc----cccchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHH
Confidence 999999988764 234455678899999999988 444999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC------CccccHHHHHHHHHHHHc
Q 003476 511 ILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN------KVVVEKIDFIHAVERSIA 577 (816)
Q Consensus 511 ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~------~~~It~~d~~~Al~r~i~ 577 (816)
|+..+... .....+.++..++..+.|++++++..++.++...+.++. ...++.+++.++++++..
T Consensus 158 i~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (494)
T COG0464 158 ILQIHTRL--MFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLP 228 (494)
T ss_pred HHHHHHhc--CCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCc
Confidence 99998865 455667899999999999999999999999998888775 355788999999988754
No 51
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.76 E-value=4.6e-18 Score=206.04 Aligned_cols=164 Identities=28% Similarity=0.392 Sum_probs=127.7
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH---------
Q 003476 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV--------- 402 (816)
Q Consensus 332 ~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~--------- 402 (816)
+|++|++++|+.+.+.+...+.. +...+..+||+||||||||++|+++|+.++.+|+.++++.+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 46999999999998876643211 112334799999999999999999999999999999876442
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccC-----CC--------CC
Q 003476 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG-----FD--------SN 469 (816)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg-----~~--------~~ 469 (816)
..|+|....++.+.|..+....| ||||||||.+.+..++. ..+.|+..||. |. ..
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~-----------~~~aLl~~ld~~~~~~f~d~~~~~~~d~ 461 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD-----------PASALLEVLDPEQNNAFSDHYLDVPFDL 461 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC-----------HHHHHHHhcCHHhcCccccccCCceecc
Confidence 24677778888889998887777 89999999998643321 12445555542 11 12
Q ss_pred CcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHH
Q 003476 470 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHV 516 (816)
Q Consensus 470 ~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l 516 (816)
+++++|+|||.++.|+++|++ ||+ .|.++.|+.+++.+|++.++
T Consensus 462 s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 462 SKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred CCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 578999999999999999998 996 78999999999999999886
No 52
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.76 E-value=6.6e-18 Score=184.99 Aligned_cols=208 Identities=31% Similarity=0.433 Sum_probs=147.9
Q ss_pred cccCCCccccccccCChHHHHH---HHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeec
Q 003476 322 VSEQGDTITFADVAGVDEAKEE---LEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 398 (816)
Q Consensus 322 ~~~~~~~vtf~DV~G~ee~K~~---L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~ 398 (816)
+...-++-+++|++|+++...+ |+.+++ .....+++||||||||||+||+.||+..+.+|..+|+
T Consensus 14 LA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~------------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sA 81 (436)
T COG2256 14 LAERLRPKSLDEVVGQEHLLGEGKPLRRAVE------------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSA 81 (436)
T ss_pred hHHHhCCCCHHHhcChHhhhCCCchHHHHHh------------cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecc
Confidence 3445567889999999987633 333332 2334569999999999999999999999999999987
Q ss_pred hhhHHHHhhcchHHHHHHHHHHHhcC----CEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEE
Q 003476 399 SEFVELYVGMGASRVRDLFARAKKEA----PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (816)
Q Consensus 399 s~~~~~~vG~~~~~vr~lF~~A~~~a----P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViV 474 (816)
+-.+.+.+|++++.|++.. ..||||||||.+.+..|+ .||-.|+ +..|++
T Consensus 82 -------v~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD---------------~lLp~vE----~G~iil 135 (436)
T COG2256 82 -------VTSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQD---------------ALLPHVE----NGTIIL 135 (436)
T ss_pred -------ccccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhh---------------hhhhhhc----CCeEEE
Confidence 4456788999999996532 469999999999876553 4566665 567888
Q ss_pred EEEc--CCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCc------cccCHHHHHhhCCCCCHHHHHH
Q 003476 475 LGAT--NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLA------KDIDLGDIASMTTGFTGADLAN 546 (816)
Q Consensus 475 IaAT--N~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~------~dvdl~~LA~~t~G~SgaDL~~ 546 (816)
|+|| |....|.+||++ | .+++.+.+.+.++..++++..+......+. ++-.++.++..+.| |.+.
T Consensus 136 IGATTENPsF~ln~ALlS--R-~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G----D~R~ 208 (436)
T COG2256 136 IGATTENPSFELNPALLS--R-ARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG----DARR 208 (436)
T ss_pred EeccCCCCCeeecHHHhh--h-hheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc----hHHH
Confidence 8888 777899999998 4 348899999999999999985544332232 12235566776665 5555
Q ss_pred HHHH---HHHHHHHhCCccccHHHHHHHHHHHH
Q 003476 547 LVNE---AALLAGRLNKVVVEKIDFIHAVERSI 576 (816)
Q Consensus 547 Lvne---Aa~~A~r~~~~~It~~d~~~Al~r~i 576 (816)
++|. +...+ +.+. .++.+++.+.+.+..
T Consensus 209 aLN~LE~~~~~~-~~~~-~~~~~~l~~~l~~~~ 239 (436)
T COG2256 209 ALNLLELAALSA-EPDE-VLILELLEEILQRRS 239 (436)
T ss_pred HHHHHHHHHHhc-CCCc-ccCHHHHHHHHhhhh
Confidence 5443 43333 3333 333677777766543
No 53
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.76 E-value=8.9e-18 Score=195.56 Aligned_cols=219 Identities=24% Similarity=0.300 Sum_probs=154.8
Q ss_pred CccccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------
Q 003476 320 AKVSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---------- 389 (816)
Q Consensus 320 ~~~~~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el---------- 389 (816)
..+.+..++.+|+|++|++++.+.|+..+ . ...+.++||+||||||||++|++++.++
T Consensus 53 ~~~~~~~rp~~f~~iiGqs~~i~~l~~al---~---------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~ 120 (531)
T TIGR02902 53 EPLSEKTRPKSFDEIIGQEEGIKALKAAL---C---------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKE 120 (531)
T ss_pred chHHHhhCcCCHHHeeCcHHHHHHHHHHH---h---------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCC
Confidence 34567778899999999999988877532 1 2345689999999999999999998642
Q ss_pred CCcEEEeechhh-------HHHHhhcch----------------HHHHHHHHHHHhcCCEEEEEcCccchhhccCCcccc
Q 003476 390 EVPFISCSASEF-------VELYVGMGA----------------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRI 446 (816)
Q Consensus 390 gvpfi~is~s~~-------~~~~vG~~~----------------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~ 446 (816)
+.+|+.++|... .+...+... ..-..++.+| ...+|||||||.+....+
T Consensus 121 ~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a---~gG~L~IdEI~~L~~~~q----- 192 (531)
T TIGR02902 121 GAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRA---HGGVLFIDEIGELHPVQM----- 192 (531)
T ss_pred CCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhcc---CCcEEEEechhhCCHHHH-----
Confidence 468999998631 111111000 0001122222 345999999999864432
Q ss_pred ccchHHHHHHHHHHhhccC------------C--------------CCCCc-EEEEEEcCCCCCCCcccCCCCcccceEE
Q 003476 447 VSNDEREQTLNQLLTEMDG------------F--------------DSNSA-VIVLGATNRSDVLDPALRRPGRFDRVVM 499 (816)
Q Consensus 447 ~~~~e~~~~Ln~LL~emDg------------~--------------~~~~~-ViVIaATN~pd~LDpALlRpGRFdr~I~ 499 (816)
+.|+..|+. . .-... .+|++|||.|+.|+|++++ |+. .+.
T Consensus 193 ----------~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~ 259 (531)
T TIGR02902 193 ----------NKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIF 259 (531)
T ss_pred ----------HHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eee
Confidence 333332211 0 00112 3455666789999999998 764 788
Q ss_pred ecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHH
Q 003476 500 VETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (816)
Q Consensus 500 v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~~~~It~~d~~~Al~r 574 (816)
+++++.+++.+|++..+++.++.+++++ ++.++..+. +++++.++++.|+..|..+++..|+.+|+.+++..
T Consensus 260 f~pL~~eei~~Il~~~a~k~~i~is~~a-l~~I~~y~~--n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 260 FRPLLDEEIKEIAKNAAEKIGINLEKHA-LELIVKYAS--NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAEN 331 (531)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCcCHHH-HHHHHHhhh--hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCC
Confidence 9999999999999999998777666554 667777664 78999999999999998888889999999999854
No 54
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=2.5e-17 Score=190.42 Aligned_cols=222 Identities=26% Similarity=0.396 Sum_probs=177.6
Q ss_pred HHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHHhhcchHHHHHHHHHHHhcCC
Q 003476 346 EIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAP 425 (816)
Q Consensus 346 eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~aP 425 (816)
++++.+.-+..-...+...-..+||+|+||||||++++++|.++|.+++.++|.++...-.+..+.++...|.+|+...|
T Consensus 412 ~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~p 491 (953)
T KOG0736|consen 412 ELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSP 491 (953)
T ss_pred HHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCc
Confidence 44444443322222333445569999999999999999999999999999999999998888888999999999999999
Q ss_pred EEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCC-CCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCC
Q 003476 426 SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-SNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPD 504 (816)
Q Consensus 426 ~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~-~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd 504 (816)
+|||+-++|.++.++.+ +.+-...+.++.++. +|-+. ...+++||++|+..+.+++.+++ -|-..|.++.|+
T Consensus 492 avifl~~~dvl~id~dg----ged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~ls 564 (953)
T KOG0736|consen 492 AVLFLRNLDVLGIDQDG----GEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALS 564 (953)
T ss_pred eEEEEeccceeeecCCC----chhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCC
Confidence 99999999999865543 333444566666666 33333 45789999999999999999988 566789999999
Q ss_pred HHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHH---h-----------------CCcccc
Q 003476 505 KIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGR---L-----------------NKVVVE 564 (816)
Q Consensus 505 ~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r---~-----------------~~~~It 564 (816)
.++|.+||+.++... ++..++.+..++.+|.|||.+|+..++..+-+.+.. + ....++
T Consensus 565 e~qRl~iLq~y~~~~--~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~ 642 (953)
T KOG0736|consen 565 EEQRLEILQWYLNHL--PLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLT 642 (953)
T ss_pred HHHHHHHHHHHHhcc--ccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceec
Confidence 999999999999764 678899999999999999999999998776333221 1 125789
Q ss_pred HHHHHHHHHHHH
Q 003476 565 KIDFIHAVERSI 576 (816)
Q Consensus 565 ~~d~~~Al~r~i 576 (816)
++||..|+.+..
T Consensus 643 ~edf~kals~~~ 654 (953)
T KOG0736|consen 643 EEDFDKALSRLQ 654 (953)
T ss_pred HHHHHHHHHHHH
Confidence 999999998753
No 55
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.74 E-value=2.2e-17 Score=199.15 Aligned_cols=224 Identities=22% Similarity=0.280 Sum_probs=164.9
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------CCcEEEe
Q 003476 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISC 396 (816)
Q Consensus 327 ~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el----------gvpfi~i 396 (816)
.+-++++++|.++..+.+.+++ .. +...++||+||||||||++|+++|.++ +..++.+
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L---~~---------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVL---CR---------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHH---hc---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 4557899999998766544433 22 334679999999999999999999987 7789999
Q ss_pred echhhHH--HHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEE
Q 003476 397 SASEFVE--LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (816)
Q Consensus 397 s~s~~~~--~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViV 474 (816)
+++.+.. .|.|+.+.+++.+|+.+....|+||||||||.+.+..... ++... .-+.|+..+. +..+.+
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~---~~~~~---~~~~L~~~l~----~g~i~~ 314 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATS---GGSMD---ASNLLKPALS----SGKLRC 314 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCC---CccHH---HHHHHHHHHh----CCCeEE
Confidence 9988874 6889999999999999988889999999999998654211 11111 2233444443 467999
Q ss_pred EEEcCCC-----CCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcC----CCCCccccCHHHHHhhCCCCC-----
Q 003476 475 LGATNRS-----DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK----ELPLAKDIDLGDIASMTTGFT----- 540 (816)
Q Consensus 475 IaATN~p-----d~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~----~l~l~~dvdl~~LA~~t~G~S----- 540 (816)
|++||.. ..+|++|.| ||+ .|.|+.|+.+++.+||+.+.... ++.+.++ .+..++..+..|-
T Consensus 315 IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~-al~~~~~ls~ryi~~r~~ 390 (731)
T TIGR02639 315 IGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDE-ALEAAVELSARYINDRFL 390 (731)
T ss_pred EEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHH-HHHHHHHhhhcccccccC
Confidence 9999963 357999999 997 79999999999999999776542 2333333 3566666555543
Q ss_pred HHHHHHHHHHHHHHHHHh----CCccccHHHHHHHHHHHH
Q 003476 541 GADLANLVNEAALLAGRL----NKVVVEKIDFIHAVERSI 576 (816)
Q Consensus 541 gaDL~~LvneAa~~A~r~----~~~~It~~d~~~Al~r~i 576 (816)
+.-.-.++++|+.....+ ....|+.+|+..++.+..
T Consensus 391 P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 391 PDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMA 430 (731)
T ss_pred CHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHh
Confidence 445567888877544332 235699999999998753
No 56
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=3.8e-17 Score=187.35 Aligned_cols=232 Identities=24% Similarity=0.231 Sum_probs=177.2
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----CCcEEEeechhhHHHHhh
Q 003476 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVELYVG 407 (816)
Q Consensus 332 ~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el----gvpfi~is~s~~~~~~vG 407 (816)
.|++-...+|++..+ ..-.| .-.+.++||+||+|||||.|+++++.++ .+.+..++|+.+...-+.
T Consensus 408 ~d~i~~~s~kke~~n---~~~sp-------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e 477 (952)
T KOG0735|consen 408 HDFIQVPSYKKENAN---QELSP-------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE 477 (952)
T ss_pred Cceeecchhhhhhhh---hhccc-------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence 566666777765544 21222 3345679999999999999999999987 466778899988766666
Q ss_pred cchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhc-cCC-CCCCcEEEEEEcCCCCCCC
Q 003476 408 MGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM-DGF-DSNSAVIVLGATNRSDVLD 485 (816)
Q Consensus 408 ~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~em-Dg~-~~~~~ViVIaATN~pd~LD 485 (816)
...+.++.+|..|.+++|+||++|++|.|....+. ..+..+...+.++.+++++ +.| ..+..+.|||+.+....|+
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~--e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~ 555 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSN--ENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLN 555 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcc--cCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcC
Confidence 66778899999999999999999999999873221 1233344444455555332 222 2345579999999999999
Q ss_pred cccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh----CCc
Q 003476 486 PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL----NKV 561 (816)
Q Consensus 486 pALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~----~~~ 561 (816)
|-|.+|++|+.++.++.|+..+|.+||+..+++... ....-|++-++..|+||...|+.-++.+|...|..+ +.+
T Consensus 556 ~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~-~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~k 634 (952)
T KOG0735|consen 556 PLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLS-DITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPK 634 (952)
T ss_pred hhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhh-hhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcc
Confidence 999999999999999999999999999999987532 112225666999999999999999999998888732 334
Q ss_pred cccHHHHHHHHHHHH
Q 003476 562 VVEKIDFIHAVERSI 576 (816)
Q Consensus 562 ~It~~d~~~Al~r~i 576 (816)
.++.++|.++++...
T Consensus 635 lltke~f~ksL~~F~ 649 (952)
T KOG0735|consen 635 LLTKELFEKSLKDFV 649 (952)
T ss_pred cchHHHHHHHHHhcC
Confidence 889999999998754
No 57
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.74 E-value=4.8e-17 Score=171.42 Aligned_cols=216 Identities=23% Similarity=0.284 Sum_probs=169.8
Q ss_pred CCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHH
Q 003476 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (816)
Q Consensus 326 ~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~~ 405 (816)
-++-+|+|.+|++++|+.|+-++..-+. .....-++||+||||.|||+||+.+|+|+|+.+-..++..+..
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~-------r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK-- 90 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKK-------RGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK-- 90 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHh-------cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC--
Confidence 4567899999999999999988876443 2345678999999999999999999999999999988875532
Q ss_pred hhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCC--------C--------C
Q 003476 406 VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------S--------N 469 (816)
Q Consensus 406 vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~--------~--------~ 469 (816)
+..+-.++.... ..+|+||||||.+.+.- + .-|+-.|+.|. + -
T Consensus 91 ----~gDlaaiLt~Le--~~DVLFIDEIHrl~~~v------------E---E~LYpaMEDf~lDI~IG~gp~Arsv~ldL 149 (332)
T COG2255 91 ----PGDLAAILTNLE--EGDVLFIDEIHRLSPAV------------E---EVLYPAMEDFRLDIIIGKGPAARSIRLDL 149 (332)
T ss_pred ----hhhHHHHHhcCC--cCCeEEEehhhhcChhH------------H---HHhhhhhhheeEEEEEccCCccceEeccC
Confidence 233344444433 23699999999997532 1 22333444331 1 1
Q ss_pred CcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHH
Q 003476 470 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVN 549 (816)
Q Consensus 470 ~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lvn 549 (816)
.++-+|+||.+...|...|+. ||.....+..++.++..+|++......++.+.++ ...++|+++.| +++=..++++
T Consensus 150 ppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~-~a~eIA~rSRG-TPRIAnRLLr 225 (332)
T COG2255 150 PPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEE-AALEIARRSRG-TPRIANRLLR 225 (332)
T ss_pred CCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChH-HHHHHHHhccC-CcHHHHHHHH
Confidence 467899999999999999988 9999999999999999999999987766666544 36778999988 8888889999
Q ss_pred HHHHHHHHhCCccccHHHHHHHHHHH
Q 003476 550 EAALLAGRLNKVVVEKIDFIHAVERS 575 (816)
Q Consensus 550 eAa~~A~r~~~~~It~~d~~~Al~r~ 575 (816)
+-.-.|.-.+...|+.+-..+|++..
T Consensus 226 RVRDfa~V~~~~~I~~~ia~~aL~~L 251 (332)
T COG2255 226 RVRDFAQVKGDGDIDRDIADKALKML 251 (332)
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHh
Confidence 99999988899999998888888764
No 58
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2e-17 Score=189.90 Aligned_cols=176 Identities=23% Similarity=0.328 Sum_probs=134.1
Q ss_pred cccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH-------
Q 003476 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE------- 403 (816)
Q Consensus 331 f~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~------- 403 (816)
=+|..|++++|+++.|++.--+- .|-...+-++|+||||+|||+++|+||..+|..||.+|...+.+
T Consensus 410 deDHYgm~dVKeRILEfiAV~kL------rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKL------RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhh------cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 36899999999999887765221 12234566999999999999999999999999999999775543
Q ss_pred --HHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCcc----ccccchHHHHHHHHHHhhccCCCCCCcEEEEEE
Q 003476 404 --LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRF----RIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 477 (816)
Q Consensus 404 --~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~----~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaA 477 (816)
.|+|.+..++-+.++..+..+| +++|||||.+++.-+++. .+..+.|++..++.- .||=--.-+.|++|||
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDH--YLdVp~DLSkVLFicT 560 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDH--YLDVPVDLSKVLFICT 560 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhh--ccccccchhheEEEEe
Confidence 6999999999999999999999 999999999995444321 122222222221111 1110111367999999
Q ss_pred cCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhc
Q 003476 478 TNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK 518 (816)
Q Consensus 478 TN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~ 518 (816)
+|..+.|+++|+. |+. .|.+.-+..+|...|.+.|+-.
T Consensus 561 AN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLip 598 (906)
T KOG2004|consen 561 ANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLIP 598 (906)
T ss_pred ccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhhh
Confidence 9999999999998 775 8888889999999999998754
No 59
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=2e-16 Score=179.94 Aligned_cols=214 Identities=17% Similarity=0.230 Sum_probs=156.4
Q ss_pred cccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-------EE
Q 003476 322 VSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FI 394 (816)
Q Consensus 322 ~~~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvp-------fi 394 (816)
++.+.++.+|+||+|++.+...|+..+.. .+.+..+||+||||||||++|+++|+.+++. +.
T Consensus 8 L~~KyRP~~f~dvVGQe~iv~~L~~~i~~-----------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg 76 (484)
T PRK14956 8 LSRKYRPQFFRDVIHQDLAIGALQNALKS-----------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCN 76 (484)
T ss_pred hHHHhCCCCHHHHhChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccC
Confidence 34566788999999999999988877652 2355679999999999999999999998763 11
Q ss_pred Ee-echhhHH----------HHhhcchHHHHHHHHHHHh----cCCEEEEEcCccchhhccCCccccccchHHHHHHHHH
Q 003476 395 SC-SASEFVE----------LYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQL 459 (816)
Q Consensus 395 ~i-s~s~~~~----------~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~L 459 (816)
.+ +|..+.. .....+...+|++.+.+.. ....|+||||+|.+.. ...|.|
T Consensus 77 ~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~---------------~A~NAL 141 (484)
T PRK14956 77 ECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD---------------QSFNAL 141 (484)
T ss_pred CCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH---------------HHHHHH
Confidence 11 1111111 0011234556776665542 2346999999999852 356888
Q ss_pred HhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCC
Q 003476 460 LTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGF 539 (816)
Q Consensus 460 L~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~ 539 (816)
|..|+. +...+++|.+|+.++.|.+++++ |+ .++.|..++.++..+.++..+...++.+.++ .+..|++.+.|
T Consensus 142 LKtLEE--Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~e-AL~~Ia~~S~G- 214 (484)
T PRK14956 142 LKTLEE--PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQE-GLFWIAKKGDG- 214 (484)
T ss_pred HHHhhc--CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-
Confidence 988873 44678999999999999999998 65 3788999999999999999988877766554 48889998887
Q ss_pred CHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003476 540 TGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (816)
Q Consensus 540 SgaDL~~LvneAa~~A~r~~~~~It~~d~~~Al 572 (816)
+.++..+++..+...+ ...|+.+++.+.+
T Consensus 215 d~RdAL~lLeq~i~~~----~~~it~~~V~~~l 243 (484)
T PRK14956 215 SVRDMLSFMEQAIVFT----DSKLTGVKIRKMI 243 (484)
T ss_pred hHHHHHHHHHHHHHhC----CCCcCHHHHHHHh
Confidence 7889888888766432 2347777765544
No 60
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=2.6e-16 Score=180.53 Aligned_cols=208 Identities=19% Similarity=0.233 Sum_probs=151.0
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC-----------
Q 003476 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV----------- 391 (816)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgv----------- 391 (816)
++..++.+|+||+|++++++.|+..+.. .+.|.++||+||||||||++|+++|+.+++
T Consensus 5 ~~kyRP~~~~divGq~~i~~~L~~~i~~-----------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~ 73 (472)
T PRK14962 5 YRKYRPKTFSEVVGQDHVKKLIINALKK-----------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNE 73 (472)
T ss_pred HHHHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcc
Confidence 3456778999999999998888776542 245677999999999999999999998865
Q ss_pred -------------cEEEeechhhHHHHhhcchHHHHHHHHHHHh----cCCEEEEEcCccchhhccCCccccccchHHHH
Q 003476 392 -------------PFISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQ 454 (816)
Q Consensus 392 -------------pfi~is~s~~~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~ 454 (816)
.++.++++. ..+...+|.+.+.+.. ....||||||+|.+.. .
T Consensus 74 c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~---------------~ 132 (472)
T PRK14962 74 CRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK---------------E 132 (472)
T ss_pred cHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH---------------H
Confidence 233333321 1233456666665542 2346999999999852 2
Q ss_pred HHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHh
Q 003476 455 TLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIAS 534 (816)
Q Consensus 455 ~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~ 534 (816)
.++.|+..|+.. ...+++|++|+.+..+++++++ |+. .+.+.+++.++...+++..+...++.+.++ .++.|+.
T Consensus 133 a~~~LLk~LE~p--~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~e-al~~Ia~ 206 (472)
T PRK14962 133 AFNALLKTLEEP--PSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDRE-ALSFIAK 206 (472)
T ss_pred HHHHHHHHHHhC--CCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHH-HHHHHHH
Confidence 346778877743 3467777777778899999998 664 899999999999999999988777776655 4778888
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHH
Q 003476 535 MTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (816)
Q Consensus 535 ~t~G~SgaDL~~LvneAa~~A~r~~~~~It~~d~~~Al~ 573 (816)
.+.| +.+++.+.+..+...+ + ..|+.+++.+++.
T Consensus 207 ~s~G-dlR~aln~Le~l~~~~---~-~~It~e~V~~~l~ 240 (472)
T PRK14962 207 RASG-GLRDALTMLEQVWKFS---E-GKITLETVHEALG 240 (472)
T ss_pred HhCC-CHHHHHHHHHHHHHhc---C-CCCCHHHHHHHHc
Confidence 7765 5666666666544332 2 2499999888774
No 61
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.69 E-value=3.4e-16 Score=188.02 Aligned_cols=222 Identities=22% Similarity=0.270 Sum_probs=156.9
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------CCcEEEeec
Q 003476 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCSA 398 (816)
Q Consensus 329 vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el----------gvpfi~is~ 398 (816)
-.++.++|.++..+.+.+++.. +.+.++||+||||||||++|+++|... ++.++.++.
T Consensus 183 g~~~~liGR~~ei~~~i~iL~r------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 183 GGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCCcCcCCCHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 3577899999866655554332 234678999999999999999999864 556667666
Q ss_pred hhhH--HHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEE
Q 003476 399 SEFV--ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLG 476 (816)
Q Consensus 399 s~~~--~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIa 476 (816)
+.++ ..|.|..+.+++.+|+.+....++||||||||.+...+... .+... ..|.|...+ .+..+.||+
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~---~g~~d---~~nlLkp~L----~~g~i~vIg 320 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS---GGQVD---AANLIKPLL----SSGKIRVIG 320 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCC---CcHHH---HHHHHHHHH----hCCCeEEEe
Confidence 6665 36788889999999999988889999999999997654311 11112 223232222 246799999
Q ss_pred EcCCCC-----CCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCC----CCCccccCHHHHHh-----hCCCCCHH
Q 003476 477 ATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKE----LPLAKDIDLGDIAS-----MTTGFTGA 542 (816)
Q Consensus 477 ATN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~----l~l~~dvdl~~LA~-----~t~G~Sga 542 (816)
|||.++ ..|++|.| ||+ .|.|+.|+.+++.+||+.+..+.. +.+.++. +...+. .+..+-|.
T Consensus 321 ATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~a-l~~a~~ls~ryi~~r~lPd 396 (758)
T PRK11034 321 STTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKA-VRAAVELAVKYINDRHLPD 396 (758)
T ss_pred cCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHH-HHHHHHHhhccccCccChH
Confidence 999864 57999999 996 799999999999999998765532 2222221 222222 23344567
Q ss_pred HHHHHHHHHHHHHHH----hCCccccHHHHHHHHHHHH
Q 003476 543 DLANLVNEAALLAGR----LNKVVVEKIDFIHAVERSI 576 (816)
Q Consensus 543 DL~~LvneAa~~A~r----~~~~~It~~d~~~Al~r~i 576 (816)
....++++|+..... ..+..|+.+|+.+.+.+..
T Consensus 397 Kaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~t 434 (758)
T PRK11034 397 KAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_pred HHHHHHHHHHHhhccCcccccccccChhhHHHHHHHHh
Confidence 888999999865432 2345688899988887754
No 62
>PRK04195 replication factor C large subunit; Provisional
Probab=99.69 E-value=6e-16 Score=178.56 Aligned_cols=210 Identities=23% Similarity=0.279 Sum_probs=151.8
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 003476 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (816)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~ 403 (816)
++.++.+|+||+|++++++.|++.+....+ ..+++++||+||||||||++|+++|++++.+++.+++++...
T Consensus 6 eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~ 77 (482)
T PRK04195 6 EKYRPKTLSDVVGNEKAKEQLREWIESWLK--------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT 77 (482)
T ss_pred hhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc
Confidence 456778899999999999999988765432 245788999999999999999999999999999999887542
Q ss_pred HHhhcchHHHHHHHHHHHh------cCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEE
Q 003476 404 LYVGMGASRVRDLFARAKK------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 477 (816)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaA 477 (816)
. ..++.+...+.. ..+.||+|||+|.+....+ ...++.|+..++. .+..+|++
T Consensus 78 ~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d-----------~~~~~aL~~~l~~----~~~~iIli 136 (482)
T PRK04195 78 A------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED-----------RGGARAILELIKK----AKQPIILT 136 (482)
T ss_pred H------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc-----------hhHHHHHHHHHHc----CCCCEEEe
Confidence 1 223333333221 2467999999999864211 1234555555552 23456667
Q ss_pred cCCCCCCCc-ccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 003476 478 TNRSDVLDP-ALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAG 556 (816)
Q Consensus 478 TN~pd~LDp-ALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~ 556 (816)
+|.+..+++ .|++ | ...|.|+.|+..++..+++..+...++.++++ .++.|+..+.| |++.+++.....+
T Consensus 137 ~n~~~~~~~k~Lrs--r-~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~e-aL~~Ia~~s~G----DlR~ain~Lq~~a- 207 (482)
T PRK04195 137 ANDPYDPSLRELRN--A-CLMIEFKRLSTRSIVPVLKRICRKEGIECDDE-ALKEIAERSGG----DLRSAINDLQAIA- 207 (482)
T ss_pred ccCccccchhhHhc--c-ceEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC----CHHHHHHHHHHHh-
Confidence 888887777 5544 3 45899999999999999999998888776654 47788887654 8888888766544
Q ss_pred HhCCccccHHHHHHHH
Q 003476 557 RLNKVVVEKIDFIHAV 572 (816)
Q Consensus 557 r~~~~~It~~d~~~Al 572 (816)
.+...|+.+++....
T Consensus 208 -~~~~~it~~~v~~~~ 222 (482)
T PRK04195 208 -EGYGKLTLEDVKTLG 222 (482)
T ss_pred -cCCCCCcHHHHHHhh
Confidence 344567777776544
No 63
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=5e-16 Score=182.81 Aligned_cols=199 Identities=18% Similarity=0.238 Sum_probs=147.9
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-------EEE
Q 003476 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FIS 395 (816)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvp-------fi~ 395 (816)
.++.+..+|+||+|++++++.|+..++. .+.++.+||+||+|||||++|+++|+.+++. +-.
T Consensus 7 arKYRPqtFdEVIGQe~Vv~~L~~aL~~-----------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~ 75 (830)
T PRK07003 7 ARKWRPKDFASLVGQEHVVRALTHALDG-----------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGV 75 (830)
T ss_pred HHHhCCCcHHHHcCcHHHHHHHHHHHhc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcc
Confidence 3556788999999999999988887642 3456778999999999999999999998763 111
Q ss_pred e-echhhHH--------H--HhhcchHHHHHHHHHHHh----cCCEEEEEcCccchhhccCCccccccchHHHHHHHHHH
Q 003476 396 C-SASEFVE--------L--YVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (816)
Q Consensus 396 i-s~s~~~~--------~--~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL 460 (816)
| +|..+.+ . ....+...++++++.+.. ....|+||||+|.|.. ...|.||
T Consensus 76 C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~---------------~A~NALL 140 (830)
T PRK07003 76 CRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN---------------HAFNAML 140 (830)
T ss_pred cHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH---------------HHHHHHH
Confidence 0 1111110 0 011234567777776643 2346999999999852 3468888
Q ss_pred hhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCC
Q 003476 461 TEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 540 (816)
Q Consensus 461 ~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~S 540 (816)
..|+. ...+++||.+||.++.|.+.+++ |+ .++.|..++.++..++|+..+.+.++.+.++ .+..|++.+.| +
T Consensus 141 KtLEE--PP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~e-AL~lIA~~A~G-s 213 (830)
T PRK07003 141 KTLEE--PPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQ-ALRLLARAAQG-S 213 (830)
T ss_pred HHHHh--cCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-C
Confidence 88873 34578899999999999999988 65 5899999999999999999998877766444 47888898887 7
Q ss_pred HHHHHHHHHHHHHH
Q 003476 541 GADLANLVNEAALL 554 (816)
Q Consensus 541 gaDL~~LvneAa~~ 554 (816)
.++..+++.++...
T Consensus 214 mRdALsLLdQAia~ 227 (830)
T PRK07003 214 MRDALSLTDQAIAY 227 (830)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888877644
No 64
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=7e-16 Score=179.98 Aligned_cols=207 Identities=19% Similarity=0.241 Sum_probs=153.6
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc----------
Q 003476 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP---------- 392 (816)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvp---------- 392 (816)
+.+.++.+|+||+|++.+++.|...+.. .+.+..+||+||||||||++|+++|+.+++.
T Consensus 6 arKyRPktFddVIGQe~vv~~L~~aI~~-----------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~ 74 (702)
T PRK14960 6 ARKYRPRNFNELVGQNHVSRALSSALER-----------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEV 74 (702)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCcc
Confidence 3456778999999999999988887652 3456789999999999999999999998762
Q ss_pred --------------EEEeechhhHHHHhhcchHHHHHHHHHHHh----cCCEEEEEcCccchhhccCCccccccchHHHH
Q 003476 393 --------------FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQ 454 (816)
Q Consensus 393 --------------fi~is~s~~~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~ 454 (816)
++.+++++ ..+...+|++...+.. ....|+||||+|.|.. .
T Consensus 75 C~sC~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~---------------~ 133 (702)
T PRK14960 75 CATCKAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST---------------H 133 (702)
T ss_pred CHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH---------------H
Confidence 22222211 1234567777765532 2346999999998853 2
Q ss_pred HHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHh
Q 003476 455 TLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIAS 534 (816)
Q Consensus 455 ~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~ 534 (816)
..|.|+..|+. +...+.+|.+|+.+..+.+.+++ |+ .++.|.+++.++..+.++..+.+.++.+.++ .+..|++
T Consensus 134 A~NALLKtLEE--PP~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~e-AL~~IA~ 207 (702)
T PRK14960 134 SFNALLKTLEE--PPEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQD-AIWQIAE 207 (702)
T ss_pred HHHHHHHHHhc--CCCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHH
Confidence 45788888874 33567777788888888888886 65 4899999999999999999998877766544 4778888
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003476 535 MTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (816)
Q Consensus 535 ~t~G~SgaDL~~LvneAa~~A~r~~~~~It~~d~~~Al 572 (816)
.+.| +.+++.+++..+... +...|+.+++...+
T Consensus 208 ~S~G-dLRdALnLLDQaIay----g~g~IT~edV~~lL 240 (702)
T PRK14960 208 SAQG-SLRDALSLTDQAIAY----GQGAVHHQDVKEML 240 (702)
T ss_pred HcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 8876 888888888876543 34568887776654
No 65
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=2.6e-16 Score=183.24 Aligned_cols=210 Identities=17% Similarity=0.240 Sum_probs=152.6
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC------------
Q 003476 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV------------ 391 (816)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgv------------ 391 (816)
.+.++.+|+||+|++++++.|++.+.. .+.++.+||+||+|||||++|+.+|+.+++
T Consensus 8 rKYRPqtFddVIGQe~vv~~L~~al~~-----------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 8 RKWRPRDFTTLVGQEHVVRALTHALEQ-----------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 456778999999999999998887753 245667899999999999999999999887
Q ss_pred cEEEe-ech--------hhHHH--HhhcchHHHHHHHHHHHh----cCCEEEEEcCccchhhccCCccccccchHHHHHH
Q 003476 392 PFISC-SAS--------EFVEL--YVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (816)
Q Consensus 392 pfi~i-s~s--------~~~~~--~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L 456 (816)
|+-.| +|. ++++. -...+...+|++.+.+.. ....|+||||+|.|.. ...
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~---------------~Aa 141 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN---------------HAF 141 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH---------------HHH
Confidence 22111 111 11110 001234567777776543 2346999999999853 356
Q ss_pred HHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhC
Q 003476 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 536 (816)
Q Consensus 457 n~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t 536 (816)
|.||..|+. ...++++|.+||.++.|.+.+++ |+ +++.|..++.++..+.|+..+.+.++.+.++ .++.|++.+
T Consensus 142 NALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~e-AL~~IA~~A 215 (700)
T PRK12323 142 NAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVN-ALRLLAQAA 215 (700)
T ss_pred HHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc
Confidence 889999883 44678899999999999999998 64 5899999999999999998887766654433 367788888
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHH
Q 003476 537 TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIH 570 (816)
Q Consensus 537 ~G~SgaDL~~LvneAa~~A~r~~~~~It~~d~~~ 570 (816)
.| +.++..++++++.... ...|+.+++.+
T Consensus 216 ~G-s~RdALsLLdQaia~~----~~~It~~~V~~ 244 (700)
T PRK12323 216 QG-SMRDALSLTDQAIAYS----AGNVSEEAVRG 244 (700)
T ss_pred CC-CHHHHHHHHHHHHHhc----cCCcCHHHHHH
Confidence 77 8899999988766432 23455554443
No 66
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.68 E-value=5.6e-16 Score=177.33 Aligned_cols=222 Identities=20% Similarity=0.283 Sum_probs=151.9
Q ss_pred CCcccccccc-CChH--HHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEee
Q 003476 326 GDTITFADVA-GVDE--AKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCS 397 (816)
Q Consensus 326 ~~~vtf~DV~-G~ee--~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el-----gvpfi~is 397 (816)
.+..||++.+ |... +...++++. .++ .....+++||||||||||+|++++++++ +..+++++
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~---~~~-------~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVA---ENP-------GKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHH---hCc-------CccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 3567899954 4332 333333332 222 1233569999999999999999999987 56789999
Q ss_pred chhhHHHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEE
Q 003476 398 ASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 477 (816)
Q Consensus 398 ~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaA 477 (816)
+.+|...+.........+-|..... .+++|+|||+|.+..... ..+.+..+++.+- .+...+||++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~~----------~~~~l~~~~n~l~---~~~~~iiits 251 (450)
T PRK00149 186 SEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKER----------TQEEFFHTFNALH---EAGKQIVLTS 251 (450)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCHH----------HHHHHHHHHHHHH---HCCCcEEEEC
Confidence 9988776544322211222332222 467999999999853321 1122223332221 1233466666
Q ss_pred cCCCCC---CCcccCCCCccc--ceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHH
Q 003476 478 TNRSDV---LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAA 552 (816)
Q Consensus 478 TN~pd~---LDpALlRpGRFd--r~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa 552 (816)
+..|.. +++.|.+ ||. ..+.+..|+.++|.+||+..+...++.+++++ ++.||....| +.++|..+++...
T Consensus 252 ~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~-l~~ia~~~~~-~~R~l~~~l~~l~ 327 (450)
T PRK00149 252 DRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEV-LEFIAKNITS-NVRELEGALNRLI 327 (450)
T ss_pred CCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHcCcCC-CHHHHHHHHHHHH
Confidence 666654 6788887 885 58999999999999999999988777777765 8888988876 8999999999988
Q ss_pred HHHHHhCCccccHHHHHHHHHHHH
Q 003476 553 LLAGRLNKVVVEKIDFIHAVERSI 576 (816)
Q Consensus 553 ~~A~r~~~~~It~~d~~~Al~r~i 576 (816)
..|...+ ..|+.+.+.+++...+
T Consensus 328 ~~~~~~~-~~it~~~~~~~l~~~~ 350 (450)
T PRK00149 328 AYASLTG-KPITLELAKEALKDLL 350 (450)
T ss_pred HHHHhhC-CCCCHHHHHHHHHHhh
Confidence 7776554 5589999999988754
No 67
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=1.2e-15 Score=170.16 Aligned_cols=213 Identities=18% Similarity=0.197 Sum_probs=151.1
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEE-------
Q 003476 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS------- 395 (816)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~------- 395 (816)
.++.++.+|+||+|++++++.|+..+.. .+.|+.+||+||||||||++|+++|.++++..-.
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~~l~~~~~~-----------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~ 75 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVTAISNGLSL-----------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRK 75 (363)
T ss_pred HHHhCCCchhhccChHHHHHHHHHHHHc-----------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 4556778999999999999988876642 2456778999999999999999999998653110
Q ss_pred -eechhhHH-----HH-----hhcchHHHHHHHHHHHh----cCCEEEEEcCccchhhccCCccccccchHHHHHHHHHH
Q 003476 396 -CSASEFVE-----LY-----VGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (816)
Q Consensus 396 -is~s~~~~-----~~-----vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL 460 (816)
.+|.++.. .+ .......++++.+.+.. ....|++|||+|.+.. ...|.||
T Consensus 76 c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~---------------~a~naLL 140 (363)
T PRK14961 76 CIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR---------------HSFNALL 140 (363)
T ss_pred CHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH---------------HHHHHHH
Confidence 01111111 00 01233456666665542 1235999999998842 2456788
Q ss_pred hhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCC
Q 003476 461 TEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 540 (816)
Q Consensus 461 ~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~S 540 (816)
..++. +...+.+|.+|+.++.+.+++.+ |+ ..+.+.+|+.++..++++..++..+..++++ .+..++..+.| +
T Consensus 141 k~lEe--~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~-al~~ia~~s~G-~ 213 (363)
T PRK14961 141 KTLEE--PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEY-ALKLIAYHAHG-S 213 (363)
T ss_pred HHHhc--CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-C
Confidence 88774 33466777778888889999887 65 4789999999999999999888776655444 46778888876 7
Q ss_pred HHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003476 541 GADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (816)
Q Consensus 541 gaDL~~LvneAa~~A~r~~~~~It~~d~~~Al 572 (816)
.+++.++++.+... +...|+.+++.+++
T Consensus 214 ~R~al~~l~~~~~~----~~~~It~~~v~~~l 241 (363)
T PRK14961 214 MRDALNLLEHAINL----GKGNINIKNVTDML 241 (363)
T ss_pred HHHHHHHHHHHHHh----cCCCCCHHHHHHHH
Confidence 88888888776543 35678888877766
No 68
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=1.5e-15 Score=175.19 Aligned_cols=216 Identities=19% Similarity=0.255 Sum_probs=159.7
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE---------
Q 003476 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF--------- 393 (816)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpf--------- 393 (816)
..+.++-+|+|++|++.+++.|+..+.. .+.+.++||+||||||||++|+++|+.+++.-
T Consensus 12 a~kyRP~~f~dliGq~~vv~~L~~ai~~-----------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~ 80 (507)
T PRK06645 12 ARKYRPSNFAELQGQEVLVKVLSYTILN-----------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIK 80 (507)
T ss_pred hhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcC
Confidence 4556788999999999999988776532 35577899999999999999999999987631
Q ss_pred --EEe-echhhHHH----------HhhcchHHHHHHHHHHHhc----CCEEEEEcCccchhhccCCccccccchHHHHHH
Q 003476 394 --ISC-SASEFVEL----------YVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (816)
Q Consensus 394 --i~i-s~s~~~~~----------~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L 456 (816)
..+ +|..+.+. -...+...++++++.+... ...|++|||+|.+.. ..+
T Consensus 81 ~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~---------------~a~ 145 (507)
T PRK06645 81 TCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK---------------GAF 145 (507)
T ss_pred CCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH---------------HHH
Confidence 111 12122110 0112456788888877533 245999999998842 346
Q ss_pred HHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhC
Q 003476 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 536 (816)
Q Consensus 457 n~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t 536 (816)
|.|+..|+. +...+++|.+|+.++.+.+++++ |+ ..+.+..++.++...+++..+.+.++.+.++ .+..|+..+
T Consensus 146 naLLk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~e-AL~~Ia~~s 219 (507)
T PRK06645 146 NALLKTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIE-ALRIIAYKS 219 (507)
T ss_pred HHHHHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc
Confidence 788888873 44577888888888899999987 55 4788999999999999999998877666544 477888888
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003476 537 TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (816)
Q Consensus 537 ~G~SgaDL~~LvneAa~~A~r~~~~~It~~d~~~Al 572 (816)
.| +.+++.++++.++..+... ...|+.+++...+
T Consensus 220 ~G-slR~al~~Ldkai~~~~~~-~~~It~~~V~~ll 253 (507)
T PRK06645 220 EG-SARDAVSILDQAASMSAKS-DNIISPQVINQML 253 (507)
T ss_pred CC-CHHHHHHHHHHHHHhhccC-CCCcCHHHHHHHH
Confidence 77 8999999999987665422 2358887777665
No 69
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.67 E-value=1.6e-15 Score=171.21 Aligned_cols=221 Identities=22% Similarity=0.309 Sum_probs=149.4
Q ss_pred CCcccccc-ccCChH--HHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEee
Q 003476 326 GDTITFAD-VAGVDE--AKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCS 397 (816)
Q Consensus 326 ~~~vtf~D-V~G~ee--~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el-----gvpfi~is 397 (816)
.+..+|++ ++|.+. +...+.++ ..++ .....+++||||||||||+|++++++++ +..+++++
T Consensus 104 ~~~~tfd~fi~g~~n~~a~~~~~~~---~~~~-------~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 104 NPKYTFDNFVVGKSNRLAHAAALAV---AENP-------GKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CCCCcccccccCCcHHHHHHHHHHH---HhCc-------CccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 35678999 556443 22222222 2222 1234569999999999999999999886 67899999
Q ss_pred chhhHHHHhhcch-HHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEE
Q 003476 398 ASEFVELYVGMGA-SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLG 476 (816)
Q Consensus 398 ~s~~~~~~vG~~~-~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIa 476 (816)
+.+|...+..... ..+..+.+..+ .+.+|+|||+|.+.... .....+..++..+. .+...+||+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~----------~~~~~l~~~~n~~~---~~~~~iiit 238 (405)
T TIGR00362 174 SEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGKE----------RTQEEFFHTFNALH---ENGKQIVLT 238 (405)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCCH----------HHHHHHHHHHHHHH---HCCCCEEEe
Confidence 9988765543221 11222222222 35699999999985321 11122333333321 123346666
Q ss_pred EcCCCCC---CCcccCCCCccc--ceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHH
Q 003476 477 ATNRSDV---LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEA 551 (816)
Q Consensus 477 ATN~pd~---LDpALlRpGRFd--r~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneA 551 (816)
++..|.. +++.+.+ ||. ..+.++.|+.++|.+|++..+...++.+++++ ++.||....+ +.++|+.+++..
T Consensus 239 s~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~-l~~ia~~~~~-~~r~l~~~l~~l 314 (405)
T TIGR00362 239 SDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEV-LEFIAKNIRS-NVRELEGALNRL 314 (405)
T ss_pred cCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC-CHHHHHHHHHHH
Confidence 6655643 5678877 885 47999999999999999999998877776654 7888988776 899999999998
Q ss_pred HHHHHHhCCccccHHHHHHHHHHHH
Q 003476 552 ALLAGRLNKVVVEKIDFIHAVERSI 576 (816)
Q Consensus 552 a~~A~r~~~~~It~~d~~~Al~r~i 576 (816)
...|...+ ..||.+.+.+++....
T Consensus 315 ~~~a~~~~-~~it~~~~~~~L~~~~ 338 (405)
T TIGR00362 315 LAYASLTG-KPITLELAKEALKDLL 338 (405)
T ss_pred HHHHHHhC-CCCCHHHHHHHHHHhc
Confidence 87776544 5689988888886643
No 70
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=1.1e-15 Score=177.08 Aligned_cols=207 Identities=16% Similarity=0.192 Sum_probs=153.9
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc----------
Q 003476 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP---------- 392 (816)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvp---------- 392 (816)
.++.++-+|+||+|++.+++.|+..+.. .+.|..+||+||||||||++|+++|+.+++.
T Consensus 7 ~~kyRP~~f~divGq~~v~~~L~~~~~~-----------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~ 75 (509)
T PRK14958 7 ARKWRPRCFQEVIGQAPVVRALSNALDQ-----------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCND 75 (509)
T ss_pred HHHHCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCC
Confidence 3456778999999999999998887753 2456678999999999999999999998763
Q ss_pred --------------EEEeechhhHHHHhhcchHHHHHHHHHHHh----cCCEEEEEcCccchhhccCCccccccchHHHH
Q 003476 393 --------------FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQ 454 (816)
Q Consensus 393 --------------fi~is~s~~~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~ 454 (816)
++.++++ ...+...+|++.+.+.. ....|+||||+|.+.. .
T Consensus 76 C~~C~~i~~g~~~d~~eidaa------s~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~---------------~ 134 (509)
T PRK14958 76 CENCREIDEGRFPDLFEVDAA------SRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG---------------H 134 (509)
T ss_pred CHHHHHHhcCCCceEEEEccc------ccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH---------------H
Confidence 2333221 12344557777766542 2235999999999853 2
Q ss_pred HHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHh
Q 003476 455 TLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIAS 534 (816)
Q Consensus 455 ~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~ 534 (816)
..|.||..|+.. ...+++|.+|+.+..+.+.+++ |. ..+.|..++.++....++..+.+.++.+.++ .+..+++
T Consensus 135 a~naLLk~LEep--p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~-al~~ia~ 208 (509)
T PRK14958 135 SFNALLKTLEEP--PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENA-ALDLLAR 208 (509)
T ss_pred HHHHHHHHHhcc--CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHH
Confidence 458888888843 3567778888888888888887 54 4788999999999999998988877766544 4778888
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003476 535 MTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (816)
Q Consensus 535 ~t~G~SgaDL~~LvneAa~~A~r~~~~~It~~d~~~Al 572 (816)
.+.| +.+++.+++..+... +...|+.+++...+
T Consensus 209 ~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~l 241 (509)
T PRK14958 209 AANG-SVRDALSLLDQSIAY----GNGKVLIADVKTML 241 (509)
T ss_pred HcCC-cHHHHHHHHHHHHhc----CCCCcCHHHHHHHH
Confidence 8866 889999999877543 24567777776654
No 71
>PRK06893 DNA replication initiation factor; Validated
Probab=99.66 E-value=1.8e-15 Score=158.44 Aligned_cols=212 Identities=12% Similarity=0.140 Sum_probs=138.5
Q ss_pred CCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhH
Q 003476 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 402 (816)
Q Consensus 326 ~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~ 402 (816)
.+..+|++.+|.+... .+..+... +. ......++||||||||||+|++|+|+++ +....+++.....
T Consensus 10 ~~~~~fd~f~~~~~~~-~~~~~~~~------~~---~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~ 79 (229)
T PRK06893 10 IDDETLDNFYADNNLL-LLDSLRKN------FI---DLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ 79 (229)
T ss_pred CCcccccccccCChHH-HHHHHHHH------hh---ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh
Confidence 3567899999876532 11111111 11 1122358999999999999999999885 3444555543221
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCC
Q 003476 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (816)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd 482 (816)
.. ..++++..+ ...+|+|||++.+... ...+..+..+++.+. .....++|++++..|.
T Consensus 80 ~~--------~~~~~~~~~--~~dlLilDDi~~~~~~----------~~~~~~l~~l~n~~~--~~~~~illits~~~p~ 137 (229)
T PRK06893 80 YF--------SPAVLENLE--QQDLVCLDDLQAVIGN----------EEWELAIFDLFNRIK--EQGKTLLLISADCSPH 137 (229)
T ss_pred hh--------hHHHHhhcc--cCCEEEEeChhhhcCC----------hHHHHHHHHHHHHHH--HcCCcEEEEeCCCChH
Confidence 11 112233322 3469999999988532 223344555555543 1122345566666676
Q ss_pred CCC---cccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Q 003476 483 VLD---PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN 559 (816)
Q Consensus 483 ~LD---pALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~ 559 (816)
.++ +.|.++.+++..+.++.|+.++|.+|++.++...++.+++++ ++.|+++..| +.+.+.++++.....+. ..
T Consensus 138 ~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v-~~~L~~~~~~-d~r~l~~~l~~l~~~~~-~~ 214 (229)
T PRK06893 138 ALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEV-ANFLLKRLDR-DMHTLFDALDLLDKASL-QA 214 (229)
T ss_pred HccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhccC-CHHHHHHHHHHHHHHHH-hc
Confidence 554 888886666789999999999999999999988788777665 7888888876 78899999887654343 33
Q ss_pred CccccHHHHHHHH
Q 003476 560 KVVVEKIDFIHAV 572 (816)
Q Consensus 560 ~~~It~~d~~~Al 572 (816)
+..||...+.+++
T Consensus 215 ~~~it~~~v~~~L 227 (229)
T PRK06893 215 QRKLTIPFVKEIL 227 (229)
T ss_pred CCCCCHHHHHHHh
Confidence 3468888777665
No 72
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.66 E-value=1.6e-15 Score=171.85 Aligned_cols=205 Identities=29% Similarity=0.417 Sum_probs=148.1
Q ss_pred cCCCccccccccCChHHHHH---HHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechh
Q 003476 324 EQGDTITFADVAGVDEAKEE---LEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (816)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~---L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~ 400 (816)
+..++-+|+|++|++++... |..++.. ..+.++||+||||||||++|+++|+..+.+|+.+++..
T Consensus 4 ~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~ 71 (413)
T PRK13342 4 ERMRPKTLDEVVGQEHLLGPGKPLRRMIEA------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT 71 (413)
T ss_pred hhhCCCCHHHhcCcHHHhCcchHHHHHHHc------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence 34466789999999998666 6665531 22347999999999999999999999999999998753
Q ss_pred hHHHHhhcchHHHHHHHHHHHh----cCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEE
Q 003476 401 FVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLG 476 (816)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIa 476 (816)
. +...++.+++.+.. ....||||||+|.+... ..+.|+..++ +..+++|+
T Consensus 72 ~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~---------------~q~~LL~~le----~~~iilI~ 125 (413)
T PRK13342 72 S-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA---------------QQDALLPHVE----DGTITLIG 125 (413)
T ss_pred c-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH---------------HHHHHHHHhh----cCcEEEEE
Confidence 2 33456677776642 25679999999988532 1245555555 24567776
Q ss_pred Ec--CCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcC--CC-CCccccCHHHHHhhCCCCCHHHHHHHHHHH
Q 003476 477 AT--NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK--EL-PLAKDIDLGDIASMTTGFTGADLANLVNEA 551 (816)
Q Consensus 477 AT--N~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~--~l-~l~~dvdl~~LA~~t~G~SgaDL~~LvneA 551 (816)
+| |....+++++++ |+ ..+.+.+++.++...+++..+... ++ .+.++ .++.+++.+.| ..+.+.+++..+
T Consensus 126 att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~-al~~l~~~s~G-d~R~aln~Le~~ 200 (413)
T PRK13342 126 ATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDE-ALDALARLANG-DARRALNLLELA 200 (413)
T ss_pred eCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHH-HHHHHHHhCCC-CHHHHHHHHHHH
Confidence 65 334688999998 76 589999999999999999887652 22 33333 36677887755 677777777776
Q ss_pred HHHHHHhCCccccHHHHHHHHHHHH
Q 003476 552 ALLAGRLNKVVVEKIDFIHAVERSI 576 (816)
Q Consensus 552 a~~A~r~~~~~It~~d~~~Al~r~i 576 (816)
... ...|+.+++..++....
T Consensus 201 ~~~-----~~~It~~~v~~~~~~~~ 220 (413)
T PRK13342 201 ALG-----VDSITLELLEEALQKRA 220 (413)
T ss_pred HHc-----cCCCCHHHHHHHHhhhh
Confidence 543 45689999888887643
No 73
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.65 E-value=9.4e-15 Score=161.78 Aligned_cols=224 Identities=23% Similarity=0.255 Sum_probs=151.9
Q ss_pred ccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC---------CcEEEeec
Q 003476 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---------VPFISCSA 398 (816)
Q Consensus 328 ~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elg---------vpfi~is~ 398 (816)
....++++|.++..++|...+..... ...+.+++|+||||||||+++++++.++. +++++++|
T Consensus 11 ~~~p~~l~gRe~e~~~l~~~l~~~~~--------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 11 DYVPDRIVHRDEQIEELAKALRPILR--------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 34456899999988877776654221 23456799999999999999999987652 57888887
Q ss_pred hhhHH----------HHh--hc-------c-hHHHHHHHHHHH-hcCCEEEEEcCccchhhccCCccccccchHHHHHHH
Q 003476 399 SEFVE----------LYV--GM-------G-ASRVRDLFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLN 457 (816)
Q Consensus 399 s~~~~----------~~v--G~-------~-~~~vr~lF~~A~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln 457 (816)
..... ... +. . ...+..+++... ...+.||+|||+|.+.... ...+.
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~------------~~~L~ 150 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD------------DDLLY 150 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC------------cHHHH
Confidence 54321 111 11 0 122344454443 3457899999999996221 12455
Q ss_pred HHHhhccC-CCCCCcEEEEEEcCCCC---CCCcccCCCCccc-ceEEecCCCHHHHHHHHHHHHhcC--CCCCccccCHH
Q 003476 458 QLLTEMDG-FDSNSAVIVLGATNRSD---VLDPALRRPGRFD-RVVMVETPDKIGREAILKVHVSKK--ELPLAKDIDLG 530 (816)
Q Consensus 458 ~LL~emDg-~~~~~~ViVIaATN~pd---~LDpALlRpGRFd-r~I~v~~Pd~~eR~~ILk~~l~~~--~l~l~~dvdl~ 530 (816)
+|+...+. ...+.++.+|+++|.++ .+++.+.+ ||. ..+.+++++.++..+|++.++... ...+.+++ ++
T Consensus 151 ~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~-l~ 227 (365)
T TIGR02928 151 QLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGV-IP 227 (365)
T ss_pred hHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhH-HH
Confidence 66554221 12236789999999885 57888876 664 679999999999999999988621 11122222 23
Q ss_pred H---HHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHH
Q 003476 531 D---IASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERS 575 (816)
Q Consensus 531 ~---LA~~t~G~SgaDL~~LvneAa~~A~r~~~~~It~~d~~~Al~r~ 575 (816)
. ++..+.| ..+.+.++|+.|+..|..++...|+.+|+..|++..
T Consensus 228 ~i~~~~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 228 LCAALAAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3 3444455 467777899999999988888899999999998775
No 74
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=2.7e-15 Score=172.18 Aligned_cols=205 Identities=18% Similarity=0.223 Sum_probs=155.8
Q ss_pred CCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc------------
Q 003476 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------ 392 (816)
Q Consensus 325 ~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvp------------ 392 (816)
+.++.+|+||+|++.+++.|+..+.. .+.|+++||+||||+|||++|+.+|..+++.
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~~-----------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~ 74 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFTL-----------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCH 74 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccH
Confidence 45678999999999999988876542 3567789999999999999999999976542
Q ss_pred ------------EEEeechhhHHHHhhcchHHHHHHHHHHHhc----CCEEEEEcCccchhhccCCccccccchHHHHHH
Q 003476 393 ------------FISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (816)
Q Consensus 393 ------------fi~is~s~~~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L 456 (816)
++.+++++ ..+...+|++.+.+... ...|++|||+|.+.. ..+
T Consensus 75 ~C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~---------------~A~ 133 (491)
T PRK14964 75 NCISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN---------------SAF 133 (491)
T ss_pred HHHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH---------------HHH
Confidence 23333321 12446688888776532 346999999998842 356
Q ss_pred HHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhC
Q 003476 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 536 (816)
Q Consensus 457 n~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t 536 (816)
|.|+..|+. +...+++|.+|+.++.+.+.+++ |+ ..+.+..++.++..+.++..+.+.++.+.++ .+..|++.+
T Consensus 134 NaLLK~LEe--Pp~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~e-AL~lIa~~s 207 (491)
T PRK14964 134 NALLKTLEE--PAPHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEE-SLKLIAENS 207 (491)
T ss_pred HHHHHHHhC--CCCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc
Confidence 889999884 34567888888888889999987 54 4789999999999999999998877766555 477888888
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003476 537 TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (816)
Q Consensus 537 ~G~SgaDL~~LvneAa~~A~r~~~~~It~~d~~~Al 572 (816)
.| +.+++.++++.+...+. ..|+.+++.+.+
T Consensus 208 ~G-slR~alslLdqli~y~~----~~It~e~V~~ll 238 (491)
T PRK14964 208 SG-SMRNALFLLEQAAIYSN----NKISEKSVRDLL 238 (491)
T ss_pred CC-CHHHHHHHHHHHHHhcC----CCCCHHHHHHHH
Confidence 76 88999999988876542 368888777653
No 75
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.65 E-value=2.3e-15 Score=171.89 Aligned_cols=224 Identities=16% Similarity=0.229 Sum_probs=150.5
Q ss_pred CCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEeechh
Q 003476 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASE 400 (816)
Q Consensus 326 ~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el-----gvpfi~is~s~ 400 (816)
.+..||++.+--+.-......+.....++. ...+++||||||+|||+|++++|+++ +..++++++.+
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~~~--------~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~ 170 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKNPG--------RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhCcC--------CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 467899998833333323333333333321 13469999999999999999999975 46788999998
Q ss_pred hHHHHhhcc-hHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcC
Q 003476 401 FVELYVGMG-ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (816)
Q Consensus 401 ~~~~~vG~~-~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN 479 (816)
|...+.... ...+.+ |.......+.+|+|||+|.+..... ....+..++..+. .....+||++.+
T Consensus 171 f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~~----------~q~elf~~~n~l~---~~~k~iIitsd~ 236 (440)
T PRK14088 171 FLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKTG----------VQTELFHTFNELH---DSGKQIVICSDR 236 (440)
T ss_pred HHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcHH----------HHHHHHHHHHHHH---HcCCeEEEECCC
Confidence 877654321 112223 3332233578999999998753211 1111222233221 123456665656
Q ss_pred CCCC---CCcccCCCCcc--cceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 003476 480 RSDV---LDPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL 554 (816)
Q Consensus 480 ~pd~---LDpALlRpGRF--dr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~ 554 (816)
.|.. +++.+.+ || ...+.+.+||.+.|.+|++..+...++.+++++ ++.||....| +.++|+.+++.....
T Consensus 237 ~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev-~~~Ia~~~~~-~~R~L~g~l~~l~~~ 312 (440)
T PRK14088 237 EPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEV-LNFVAENVDD-NLRRLRGAIIKLLVY 312 (440)
T ss_pred CHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHhcccc-CHHHHHHHHHHHHHH
Confidence 6654 4567776 66 467889999999999999999988778777765 8888988876 889999999987766
Q ss_pred HHHhCCccccHHHHHHHHHHHH
Q 003476 555 AGRLNKVVVEKIDFIHAVERSI 576 (816)
Q Consensus 555 A~r~~~~~It~~d~~~Al~r~i 576 (816)
+...+ ..||.+...+++...+
T Consensus 313 ~~~~~-~~it~~~a~~~L~~~~ 333 (440)
T PRK14088 313 KETTG-EEVDLKEAILLLKDFI 333 (440)
T ss_pred HHHhC-CCCCHHHHHHHHHHHh
Confidence 75554 5699998888887654
No 76
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=2.7e-15 Score=176.72 Aligned_cols=212 Identities=20% Similarity=0.268 Sum_probs=152.3
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE-------EEe
Q 003476 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------ISC 396 (816)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpf-------i~i 396 (816)
.+.++.+|+||+|++.+++.|...+.. .+.+..+||+||+|||||++|+++|+.+++.. -.|
T Consensus 8 ~KyRP~~f~divGQe~vv~~L~~~l~~-----------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (647)
T PRK07994 8 RKWRPQTFAEVVGQEHVLTALANALDL-----------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC 76 (647)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence 445678999999999999988877653 24566789999999999999999999987631 111
Q ss_pred -echhh--------HHHH--hhcchHHHHHHHHHHHh----cCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHh
Q 003476 397 -SASEF--------VELY--VGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (816)
Q Consensus 397 -s~s~~--------~~~~--vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~ 461 (816)
+|..+ .+.. ...+...+|++.+.+.. ....|+||||+|.|.. ...|.||.
T Consensus 77 ~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~---------------~a~NALLK 141 (647)
T PRK07994 77 DNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR---------------HSFNALLK 141 (647)
T ss_pred HHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH---------------HHHHHHHH
Confidence 01111 1000 01233556777666542 2345999999999853 35688999
Q ss_pred hccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCH
Q 003476 462 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541 (816)
Q Consensus 462 emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sg 541 (816)
.|+. +...+++|.+|+.+..|.+.+++ |+ .++.|..++.++..+.|+..+...++.+.+ ..+..|+..+.| +.
T Consensus 142 tLEE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~-~aL~~Ia~~s~G-s~ 214 (647)
T PRK07994 142 TLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEP-RALQLLARAADG-SM 214 (647)
T ss_pred HHHc--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHcCC-CH
Confidence 9883 44677888888889999999988 63 689999999999999999988776665543 357778888877 78
Q ss_pred HHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003476 542 ADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (816)
Q Consensus 542 aDL~~LvneAa~~A~r~~~~~It~~d~~~Al 572 (816)
++..+++..|... +...|+.+++...+
T Consensus 215 R~Al~lldqaia~----~~~~it~~~v~~~l 241 (647)
T PRK07994 215 RDALSLTDQAIAS----GNGQVTTDDVSAML 241 (647)
T ss_pred HHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 8998998876533 23346666665544
No 77
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=2.3e-15 Score=176.96 Aligned_cols=212 Identities=19% Similarity=0.263 Sum_probs=154.6
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE-------EEe
Q 003476 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------ISC 396 (816)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpf-------i~i 396 (816)
.+.++.+|+||+|++.+++.|+..+.. .+.++++||+||+|||||++|+++|++++++- -.+
T Consensus 8 rKYRP~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C 76 (709)
T PRK08691 8 RKWRPKTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVC 76 (709)
T ss_pred HHhCCCCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCccc
Confidence 456778999999999999988887653 35677899999999999999999999987631 111
Q ss_pred e-chhhHH-----H-----HhhcchHHHHHHHHHHHh----cCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHh
Q 003476 397 S-ASEFVE-----L-----YVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (816)
Q Consensus 397 s-~s~~~~-----~-----~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~ 461 (816)
. |..+.. . ....+...++++++.+.. ....||||||+|.+.. ..+|.||.
T Consensus 77 ~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~---------------~A~NALLK 141 (709)
T PRK08691 77 QSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK---------------SAFNAMLK 141 (709)
T ss_pred HHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH---------------HHHHHHHH
Confidence 1 111100 0 112334567888776542 2346999999998742 34578888
Q ss_pred hccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCH
Q 003476 462 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541 (816)
Q Consensus 462 emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sg 541 (816)
.|+. ....+.+|.+|+.+..+.+.+++ |+ ..+.|..++.++....|+..+.+.++.+.++ .+..|++.+.| +.
T Consensus 142 tLEE--Pp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~e-AL~~Ia~~A~G-sl 214 (709)
T PRK08691 142 TLEE--PPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPP-ALQLLGRAAAG-SM 214 (709)
T ss_pred HHHh--CCCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHH-HHHHHHHHhCC-CH
Confidence 8874 33567788888888888888876 65 4778889999999999999998887766544 47888888866 88
Q ss_pred HHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003476 542 ADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (816)
Q Consensus 542 aDL~~LvneAa~~A~r~~~~~It~~d~~~Al 572 (816)
+++.+++..+.... ...|+.+++...+
T Consensus 215 RdAlnLLDqaia~g----~g~It~e~V~~lL 241 (709)
T PRK08691 215 RDALSLLDQAIALG----SGKVAENDVRQMI 241 (709)
T ss_pred HHHHHHHHHHHHhc----CCCcCHHHHHHHH
Confidence 99999998876542 3457777766654
No 78
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=5.7e-15 Score=170.83 Aligned_cols=206 Identities=20% Similarity=0.258 Sum_probs=150.8
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc----------
Q 003476 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP---------- 392 (816)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvp---------- 392 (816)
+.+.++.+|+||+|++++++.|+..+.. .+.|..+||+||||||||++|+++|+.+.+.
T Consensus 5 ~~KyRP~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C 73 (504)
T PRK14963 5 YQRARPITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGEC 73 (504)
T ss_pred HHhhCCCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcC
Confidence 3556788999999999999999887763 2456668999999999999999999988641
Q ss_pred -------------EEEeechhhHHHHhhcchHHHHHHHHHHHh----cCCEEEEEcCccchhhccCCccccccchHHHHH
Q 003476 393 -------------FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (816)
Q Consensus 393 -------------fi~is~s~~~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 455 (816)
++.++++ ...+...++++.+.+.. ..+.||+|||+|.+. ...
T Consensus 74 ~sc~~i~~~~h~dv~el~~~------~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls---------------~~a 132 (504)
T PRK14963 74 ESCLAVRRGAHPDVLEIDAA------SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS---------------KSA 132 (504)
T ss_pred hhhHHHhcCCCCceEEeccc------ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccC---------------HHH
Confidence 2222221 11234556776555443 345699999998763 235
Q ss_pred HHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhh
Q 003476 456 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 535 (816)
Q Consensus 456 Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~ 535 (816)
++.|+..|+.. ...+++|.+||.+..+.+++.+ |+ ..+.|..|+.++..+.++..+.+.++.+.++ .+..++..
T Consensus 133 ~naLLk~LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~-Al~~ia~~ 206 (504)
T PRK14963 133 FNALLKTLEEP--PEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPE-ALQLVARL 206 (504)
T ss_pred HHHHHHHHHhC--CCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 67888888743 3457777788888999999987 54 3799999999999999999998877766444 47778888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003476 536 TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (816)
Q Consensus 536 t~G~SgaDL~~LvneAa~~A~r~~~~~It~~d~~~Al 572 (816)
+.| +.+++.++++.+... ...|+.+++...+
T Consensus 207 s~G-dlR~aln~Lekl~~~-----~~~It~~~V~~~l 237 (504)
T PRK14963 207 ADG-AMRDAESLLERLLAL-----GTPVTRKQVEEAL 237 (504)
T ss_pred cCC-CHHHHHHHHHHHHhc-----CCCCCHHHHHHHH
Confidence 876 667777777765432 2368887777664
No 79
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=3.9e-15 Score=178.15 Aligned_cols=197 Identities=21% Similarity=0.282 Sum_probs=144.3
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-------EEE
Q 003476 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FIS 395 (816)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvp-------fi~ 395 (816)
.++.++.+|+||+|++.+++.|+.++.. .+.+..+||+||||||||++|+++|+.+++. +..
T Consensus 7 aeKyRP~tFddIIGQe~Iv~~LknaI~~-----------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~ 75 (944)
T PRK14949 7 ARKWRPATFEQMVGQSHVLHALTNALTQ-----------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGV 75 (944)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCC
Confidence 4556788999999999999988877642 2456678999999999999999999998764 111
Q ss_pred e-echhhHHH-H-----h----hcchHHHHHHHHHHHh----cCCEEEEEcCccchhhccCCccccccchHHHHHHHHHH
Q 003476 396 C-SASEFVEL-Y-----V----GMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (816)
Q Consensus 396 i-s~s~~~~~-~-----v----G~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL 460 (816)
| +|-.+.+. + + ..+...+|++.+.+.. ....|+||||+|.|.. ..+|.||
T Consensus 76 C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~---------------eAqNALL 140 (944)
T PRK14949 76 CSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR---------------SSFNALL 140 (944)
T ss_pred chHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCH---------------HHHHHHH
Confidence 1 11111110 0 0 1223456776665542 2335999999999852 4668999
Q ss_pred hhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCC
Q 003476 461 TEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 540 (816)
Q Consensus 461 ~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~S 540 (816)
..|+. +...+++|.+|+.+..|.+.+++ |. .++.|..++.++..+.|+..+...++.+.++ .+..|+..+.| +
T Consensus 141 KtLEE--PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~ede-AL~lIA~~S~G-d 213 (944)
T PRK14949 141 KTLEE--PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAE-ALTLLAKAANG-S 213 (944)
T ss_pred HHHhc--cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-C
Confidence 99984 34567788888888889889887 54 5889999999999999999887766554433 47778888877 7
Q ss_pred HHHHHHHHHHHH
Q 003476 541 GADLANLVNEAA 552 (816)
Q Consensus 541 gaDL~~LvneAa 552 (816)
.+++.+++..+.
T Consensus 214 ~R~ALnLLdQal 225 (944)
T PRK14949 214 MRDALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHHHH
Confidence 889999988776
No 80
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.63 E-value=2.4e-15 Score=183.42 Aligned_cols=218 Identities=21% Similarity=0.279 Sum_probs=153.5
Q ss_pred CCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------CCcEEE
Q 003476 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFIS 395 (816)
Q Consensus 326 ~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el----------gvpfi~ 395 (816)
-.+-++++++|.++. ++.++..|.. +...+++|+||||||||++|+.+|..+ +..++.
T Consensus 181 ~r~~~ld~~iGr~~e---i~~~i~~l~r---------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 181 AREGKIDPVLGRDDE---IRQMIDILLR---------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred hcCCCCCcccCCHHH---HHHHHHHHhc---------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 345679999999985 5555554433 233578999999999999999999875 345788
Q ss_pred eechhhHH--HHhhcchHHHHHHHHHHHh-cCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcE
Q 003476 396 CSASEFVE--LYVGMGASRVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAV 472 (816)
Q Consensus 396 is~s~~~~--~~vG~~~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~V 472 (816)
++.+.+.. .|.|+.+.+++.+|+.++. ..++||||||||.+.+.++.. +..+ .-|.|+..+. ++.+
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~---~~~d----~~n~Lkp~l~----~G~l 317 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA---GQGD----AANLLKPALA----RGEL 317 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc---cccc----HHHHhhHHhh----CCCe
Confidence 88877663 5788889999999999875 468899999999998654321 1111 2233444443 5679
Q ss_pred EEEEEcCCC-----CCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcC----CCCCccccCHHHHHhhCCCCC---
Q 003476 473 IVLGATNRS-----DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK----ELPLAKDIDLGDIASMTTGFT--- 540 (816)
Q Consensus 473 iVIaATN~p-----d~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~----~l~l~~dvdl~~LA~~t~G~S--- 540 (816)
.+|+||+.. -.+|+||.| ||. .|.|+.|+.+++.+||+.+.... ++.+.++ .+..++..+.+|-
T Consensus 318 ~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~-al~~~~~ls~ryi~~r 393 (852)
T TIGR03345 318 RTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDE-AVVAAVELSHRYIPGR 393 (852)
T ss_pred EEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHH-HHHHHHHHcccccccc
Confidence 999999864 358999999 996 89999999999999986665432 2333333 4666777776653
Q ss_pred --HHHHHHHHHHHHHHHHHh-CCccccHHHHHH
Q 003476 541 --GADLANLVNEAALLAGRL-NKVVVEKIDFIH 570 (816)
Q Consensus 541 --gaDL~~LvneAa~~A~r~-~~~~It~~d~~~ 570 (816)
+...-.++++|+...... ....+..+++.+
T Consensus 394 ~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~ 426 (852)
T TIGR03345 394 QLPDKAVSLLDTACARVALSQNATPAALEDLRR 426 (852)
T ss_pred cCccHHHHHHHHHHHHHHHhccCCchhHHHHHH
Confidence 456678889987665443 333344444443
No 81
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=6.6e-15 Score=172.52 Aligned_cols=213 Identities=20% Similarity=0.249 Sum_probs=154.5
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-------EEE
Q 003476 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FIS 395 (816)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvp-------fi~ 395 (816)
+...++.+|+||+|++++++.|+..+.. .+.++.+||+||+|||||++|+.+|+.++++ +-.
T Consensus 7 ~~k~rP~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~ 75 (559)
T PRK05563 7 YRKWRPQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNE 75 (559)
T ss_pred HHHhCCCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 3455778999999999999988887653 2456779999999999999999999987642 111
Q ss_pred e-echhhHH----------HHhhcchHHHHHHHHHHHhc----CCEEEEEcCccchhhccCCccccccchHHHHHHHHHH
Q 003476 396 C-SASEFVE----------LYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (816)
Q Consensus 396 i-s~s~~~~----------~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL 460 (816)
| +|..+.+ .-.+.+...+|++.+.+... ...|++|||+|.+.. ..+|.||
T Consensus 76 C~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~---------------~a~naLL 140 (559)
T PRK05563 76 CEICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST---------------GAFNALL 140 (559)
T ss_pred cHHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH---------------HHHHHHH
Confidence 1 1111100 00123456688888776632 245999999998842 3568889
Q ss_pred hhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCC
Q 003476 461 TEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 540 (816)
Q Consensus 461 ~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~S 540 (816)
..++. +...+++|.+|+.++.+.+++++ |+. .+.|..|+.++....++..+.+.++.++++ .+..++..+.| +
T Consensus 141 KtLEe--pp~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~-al~~ia~~s~G-~ 213 (559)
T PRK05563 141 KTLEE--PPAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDE-ALRLIARAAEG-G 213 (559)
T ss_pred HHhcC--CCCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-C
Confidence 88874 34567778788889999999987 653 688999999999999999998877766544 47778888876 7
Q ss_pred HHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003476 541 GADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (816)
Q Consensus 541 gaDL~~LvneAa~~A~r~~~~~It~~d~~~Al 572 (816)
.+++.+++..+...+ ...|+.+++...+
T Consensus 214 ~R~al~~Ldq~~~~~----~~~It~~~V~~vl 241 (559)
T PRK05563 214 MRDALSILDQAISFG----DGKVTYEDALEVT 241 (559)
T ss_pred HHHHHHHHHHHHHhc----cCCCCHHHHHHHh
Confidence 888888888776543 3457777665543
No 82
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.63 E-value=3.6e-14 Score=158.85 Aligned_cols=226 Identities=22% Similarity=0.236 Sum_probs=152.3
Q ss_pred ccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEeechhhH
Q 003476 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASEFV 402 (816)
Q Consensus 328 ~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el-----gvpfi~is~s~~~ 402 (816)
....+.++|.++..++|...+..... ...|.+++|+||||||||++++.+++++ ++.+++++|....
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~--------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~ 97 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALR--------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR 97 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhC--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence 34567899999877777666543211 2345679999999999999999999876 5788999886432
Q ss_pred H----------HHhh-------cchH-HHHHHHHHHHh-cCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhc
Q 003476 403 E----------LYVG-------MGAS-RVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM 463 (816)
Q Consensus 403 ~----------~~vG-------~~~~-~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~em 463 (816)
. ...+ .... .+..+.+.... ..+.||+|||+|.+....+ ...+..|+..+
T Consensus 98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~-----------~~~l~~l~~~~ 166 (394)
T PRK00411 98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG-----------NDVLYSLLRAH 166 (394)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC-----------chHHHHHHHhh
Confidence 1 1111 0111 22223333332 3568999999999972211 13566666665
Q ss_pred cCCCCCCcEEEEEEcCCCC---CCCcccCCCCcc-cceEEecCCCHHHHHHHHHHHHhcC--CCCCccccCHHHHHhhCC
Q 003476 464 DGFDSNSAVIVLGATNRSD---VLDPALRRPGRF-DRVVMVETPDKIGREAILKVHVSKK--ELPLAKDIDLGDIASMTT 537 (816)
Q Consensus 464 Dg~~~~~~ViVIaATN~pd---~LDpALlRpGRF-dr~I~v~~Pd~~eR~~ILk~~l~~~--~l~l~~dvdl~~LA~~t~ 537 (816)
+... ..++.+|+++|..+ .+++.+.+ || ...|.+++++.++..+|++.++... ...+.++ .++.+++.+.
T Consensus 167 ~~~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~-~l~~i~~~~~ 242 (394)
T PRK00411 167 EEYP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDE-VLDLIADLTA 242 (394)
T ss_pred hccC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHh-HHHHHHHHHH
Confidence 5443 24788888888763 56777665 45 3578999999999999999988642 1112222 3566666663
Q ss_pred CC--CHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHH
Q 003476 538 GF--TGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSI 576 (816)
Q Consensus 538 G~--SgaDL~~LvneAa~~A~r~~~~~It~~d~~~Al~r~i 576 (816)
+. ..+.+.+++..|+..|..++...|+.+|+..|+++..
T Consensus 243 ~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~ 283 (394)
T PRK00411 243 REHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSE 283 (394)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH
Confidence 32 3456668889999999888889999999999998763
No 83
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=5.9e-15 Score=173.48 Aligned_cols=212 Identities=16% Similarity=0.234 Sum_probs=152.7
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-----------
Q 003476 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP----------- 392 (816)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvp----------- 392 (816)
.+.++.+|+||+|++.+++.|+..+.. .+.+..+||+||+|||||++|+++|+.+++.
T Consensus 8 ~KyRP~~f~dviGQe~vv~~L~~~l~~-----------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~ 76 (618)
T PRK14951 8 RKYRPRSFSEMVGQEHVVQALTNALTQ-----------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT 76 (618)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC
Confidence 445678999999999999988887653 2456678999999999999999999998752
Q ss_pred -EEEe-echhh--------HHH--HhhcchHHHHHHHHHHHhc----CCEEEEEcCccchhhccCCccccccchHHHHHH
Q 003476 393 -FISC-SASEF--------VEL--YVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (816)
Q Consensus 393 -fi~i-s~s~~--------~~~--~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L 456 (816)
+-.| +|..+ .+. ....+...+|++.+.+... .-.|++|||+|.+.. ...
T Consensus 77 pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~---------------~a~ 141 (618)
T PRK14951 77 PCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN---------------TAF 141 (618)
T ss_pred CCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH---------------HHH
Confidence 1111 11111 110 0112335678887765432 135999999999853 246
Q ss_pred HHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhC
Q 003476 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 536 (816)
Q Consensus 457 n~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t 536 (816)
|.||..|+. ....+++|.+|+.+..+.+.+++ |. .++.|..++.++..+.|+..+.+.++.+.++ .+..|++.+
T Consensus 142 NaLLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~-AL~~La~~s 215 (618)
T PRK14951 142 NAMLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQ-ALRLLARAA 215 (618)
T ss_pred HHHHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc
Confidence 888888874 34567777788888888888887 54 5889999999999999999988877766543 478888888
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003476 537 TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (816)
Q Consensus 537 ~G~SgaDL~~LvneAa~~A~r~~~~~It~~d~~~Al 572 (816)
.| +.+++.+++..+.... ...|+.+++...+
T Consensus 216 ~G-slR~al~lLdq~ia~~----~~~It~~~V~~~L 246 (618)
T PRK14951 216 RG-SMRDALSLTDQAIAFG----SGQLQEAAVRQML 246 (618)
T ss_pred CC-CHHHHHHHHHHHHHhc----CCCcCHHHHHHHH
Confidence 77 8888888887766542 3457776666544
No 84
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.63 E-value=1.4e-14 Score=158.17 Aligned_cols=211 Identities=20% Similarity=0.241 Sum_probs=138.5
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC-----CcEEEeec
Q 003476 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSA 398 (816)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elg-----vpfi~is~ 398 (816)
++..+.+|+|++|.+++++.|..++.. ....++||+||||||||++|+++++++. .+++.+++
T Consensus 7 ~ky~P~~~~~~~g~~~~~~~L~~~~~~------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~ 74 (337)
T PRK12402 7 EKYRPALLEDILGQDEVVERLSRAVDS------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV 74 (337)
T ss_pred HhhCCCcHHHhcCCHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence 445677899999999999988886642 1123699999999999999999999874 45788888
Q ss_pred hhhHHHH-------------hhc-------chHHHHHHHHHHHh-----cCCEEEEEcCccchhhccCCccccccchHHH
Q 003476 399 SEFVELY-------------VGM-------GASRVRDLFARAKK-----EAPSIIFIDEIDAVAKSRDGRFRIVSNDERE 453 (816)
Q Consensus 399 s~~~~~~-------------vG~-------~~~~vr~lF~~A~~-----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~ 453 (816)
+++.... .+. ....++.+.+.... ..+.+|+|||+|.+...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~-------------- 140 (337)
T PRK12402 75 ADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED-------------- 140 (337)
T ss_pred hhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH--------------
Confidence 7764311 011 11233333333322 22459999999987421
Q ss_pred HHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHH
Q 003476 454 QTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIA 533 (816)
Q Consensus 454 ~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA 533 (816)
..+.|+..++.... ...+|.+++.+..+.+.|.+ |+ ..+.+.+|+.++...+++..+.+.++.+.++ .++.++
T Consensus 141 -~~~~L~~~le~~~~--~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-al~~l~ 213 (337)
T PRK12402 141 -AQQALRRIMEQYSR--TCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDD-GLELIA 213 (337)
T ss_pred -HHHHHHHHHHhccC--CCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHH
Confidence 12334444443332 23444555556677777876 54 4789999999999999999998877766544 477788
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHH
Q 003476 534 SMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (816)
Q Consensus 534 ~~t~G~SgaDL~~LvneAa~~A~r~~~~~It~~d~~~Al~ 573 (816)
..+.| + ++.+++.....+. +...|+.+++.+++.
T Consensus 214 ~~~~g-d---lr~l~~~l~~~~~--~~~~It~~~v~~~~~ 247 (337)
T PRK12402 214 YYAGG-D---LRKAILTLQTAAL--AAGEITMEAAYEALG 247 (337)
T ss_pred HHcCC-C---HHHHHHHHHHHHH--cCCCCCHHHHHHHhC
Confidence 87743 4 4444444443332 223689888877653
No 85
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.62 E-value=8e-15 Score=175.57 Aligned_cols=215 Identities=21% Similarity=0.285 Sum_probs=146.7
Q ss_pred ccccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechh
Q 003476 321 KVSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (816)
Q Consensus 321 ~~~~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~ 400 (816)
...+..++-+|+|++|++++......+...+.. ....++||+||||||||++|+++|+..+.+|+.+++..
T Consensus 17 PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~---------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~ 87 (725)
T PRK13341 17 PLADRLRPRTLEEFVGQDHILGEGRLLRRAIKA---------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVL 87 (725)
T ss_pred ChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhc---------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhh
Confidence 345566778999999999987542222222222 12346999999999999999999999999999888752
Q ss_pred hHHHHhhcchHHHHHHHHHHH-----hcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEE
Q 003476 401 FVELYVGMGASRVRDLFARAK-----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVL 475 (816)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~-----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVI 475 (816)
. +...+++.++.+. .....||||||+|.+.... .+.|+..++ +..+++|
T Consensus 88 ~-------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~q---------------QdaLL~~lE----~g~IiLI 141 (725)
T PRK13341 88 A-------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQ---------------QDALLPWVE----NGTITLI 141 (725)
T ss_pred h-------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHH---------------HHHHHHHhc----CceEEEE
Confidence 1 1233444444442 1245699999999985321 234555554 3457777
Q ss_pred EEcC--CCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHh-------cCCCCCccccCHHHHHhhCCCCCHHHHHH
Q 003476 476 GATN--RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS-------KKELPLAKDIDLGDIASMTTGFTGADLAN 546 (816)
Q Consensus 476 aATN--~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~-------~~~l~l~~dvdl~~LA~~t~G~SgaDL~~ 546 (816)
++|+ ....+++++++ |. ..+.+++++.+++..+++..+. ..++.++++ .++.|+..+.| ..+++.+
T Consensus 142 ~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~de-aL~~La~~s~G-D~R~lln 216 (725)
T PRK13341 142 GATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPE-AEKHLVDVANG-DARSLLN 216 (725)
T ss_pred EecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHH-HHHHHHHhCCC-CHHHHHH
Confidence 7763 33578899988 43 4789999999999999999887 233444444 36778888765 7788888
Q ss_pred HHHHHHHHHHHhC--CccccHHHHHHHHHHH
Q 003476 547 LVNEAALLAGRLN--KVVVEKIDFIHAVERS 575 (816)
Q Consensus 547 LvneAa~~A~r~~--~~~It~~d~~~Al~r~ 575 (816)
+++.+...+.... ...|+.+++.+++.+.
T Consensus 217 ~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~ 247 (725)
T PRK13341 217 ALELAVESTPPDEDGLIDITLAIAEESIQQR 247 (725)
T ss_pred HHHHHHHhcccCCCCceeccHHHHHHHHHHh
Confidence 8888775442222 2347778887777653
No 86
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.62 E-value=6.9e-15 Score=151.89 Aligned_cols=206 Identities=17% Similarity=0.224 Sum_probs=137.2
Q ss_pred CccccccccC--ChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhh
Q 003476 327 DTITFADVAG--VDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (816)
Q Consensus 327 ~~vtf~DV~G--~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~ 401 (816)
...+|++.+. .+.+.+.+++++. ...+.+++|+||||||||++|++++.++ +.+++.++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 3467888873 4445555555432 2346789999999999999999999876 578999999887
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCC
Q 003476 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (816)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~p 481 (816)
.... .+++.... .+.+|+|||+|.+.... +....+..++..+. .....+|+.++..+
T Consensus 78 ~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~----------~~~~~L~~~l~~~~---~~~~~iIits~~~~ 134 (226)
T TIGR03420 78 AQAD--------PEVLEGLE--QADLVCLDDVEAIAGQP----------EWQEALFHLYNRVR---EAGGRLLIAGRAAP 134 (226)
T ss_pred HHhH--------HHHHhhcc--cCCEEEEeChhhhcCCh----------HHHHHHHHHHHHHH---HcCCeEEEECCCCh
Confidence 6432 23333222 23599999999885321 11223334444332 12233444444344
Q ss_pred CCCC---cccCCCCcc--cceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 003476 482 DVLD---PALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAG 556 (816)
Q Consensus 482 d~LD---pALlRpGRF--dr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~ 556 (816)
..++ +.|.+ || ..++.+++|+.+++..+++.++.+.++++.+++ +..|+... +-+.+++.++++++...+.
T Consensus 135 ~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~-l~~L~~~~-~gn~r~L~~~l~~~~~~~~ 210 (226)
T TIGR03420 135 AQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEV-ADYLLRHG-SRDMGSLMALLDALDRASL 210 (226)
T ss_pred HHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhc-cCCHHHHHHHHHHHHHHHH
Confidence 4332 66665 54 578999999999999999998877666666553 67788864 4589999999999887665
Q ss_pred HhCCccccHHHHHHHH
Q 003476 557 RLNKVVVEKIDFIHAV 572 (816)
Q Consensus 557 r~~~~~It~~d~~~Al 572 (816)
..+ ..|+.+.+.+.+
T Consensus 211 ~~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 211 AAK-RKITIPFVKEVL 225 (226)
T ss_pred HhC-CCCCHHHHHHHh
Confidence 544 568887766654
No 87
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.62 E-value=1.6e-14 Score=168.61 Aligned_cols=221 Identities=20% Similarity=0.248 Sum_probs=150.7
Q ss_pred CCccccccccCChHH---HHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEee
Q 003476 326 GDTITFADVAGVDEA---KEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCS 397 (816)
Q Consensus 326 ~~~vtf~DV~G~ee~---K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el-----gvpfi~is 397 (816)
.+..+|++.+.-+.- ...+..+++ ++. ...+.++|||++|||||+|++|+++++ +..+++++
T Consensus 282 ~~~~TFDnFvvG~sN~~A~aaa~avae---~~~-------~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit 351 (617)
T PRK14086 282 NPKYTFDTFVIGASNRFAHAAAVAVAE---APA-------KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS 351 (617)
T ss_pred CCCCCHhhhcCCCccHHHHHHHHHHHh---Ccc-------ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 356899998744432 223333332 211 123349999999999999999999976 57889999
Q ss_pred chhhHHHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEE
Q 003476 398 ASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 477 (816)
Q Consensus 398 ~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaA 477 (816)
+.+|.+.+.........+.|.... ..+++|+||||+.+..+. .....+..+++.+. .+.+-+|| |
T Consensus 352 aeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke----------~tqeeLF~l~N~l~---e~gk~III-T 416 (617)
T PRK14086 352 SEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKE----------STQEEFFHTFNTLH---NANKQIVL-S 416 (617)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCH----------HHHHHHHHHHHHHH---hcCCCEEE-e
Confidence 999987765443222233344322 346799999999886332 11223334444432 12233444 5
Q ss_pred cCC-C---CCCCcccCCCCcc--cceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHH
Q 003476 478 TNR-S---DVLDPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEA 551 (816)
Q Consensus 478 TN~-p---d~LDpALlRpGRF--dr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneA 551 (816)
+|. | ..+++.|.+ || ...+.+..||.+.|.+||+.++...++.+.+++ ++.|+.+..+ +.++|+.+++..
T Consensus 417 Sd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eV-i~yLa~r~~r-nvR~LegaL~rL 492 (617)
T PRK14086 417 SDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEV-LEFIASRISR-NIRELEGALIRV 492 (617)
T ss_pred cCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHhccC-CHHHHHHHHHHH
Confidence 554 3 357888888 77 567799999999999999999999888887765 7778887765 789999999987
Q ss_pred HHHHHHhCCccccHHHHHHHHHHHH
Q 003476 552 ALLAGRLNKVVVEKIDFIHAVERSI 576 (816)
Q Consensus 552 a~~A~r~~~~~It~~d~~~Al~r~i 576 (816)
...|...+ ..|+.+.+.++++..+
T Consensus 493 ~a~a~~~~-~~itl~la~~vL~~~~ 516 (617)
T PRK14086 493 TAFASLNR-QPVDLGLTEIVLRDLI 516 (617)
T ss_pred HHHHHhhC-CCCCHHHHHHHHHHhh
Confidence 76665544 5689888888886544
No 88
>PLN03025 replication factor C subunit; Provisional
Probab=99.62 E-value=7.7e-15 Score=160.76 Aligned_cols=203 Identities=21% Similarity=0.231 Sum_probs=138.1
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC-----cEEEeec
Q 003476 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-----PFISCSA 398 (816)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgv-----pfi~is~ 398 (816)
++.++.+|+|++|++++++.|+.++.. .+.| ++||+||||||||++|+++|+++.. .++.++.
T Consensus 5 ~kyrP~~l~~~~g~~~~~~~L~~~~~~-----------~~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 5 EKYRPTKLDDIVGNEDAVSRLQVIARD-----------GNMP-NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred hhcCCCCHHHhcCcHHHHHHHHHHHhc-----------CCCc-eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 456788999999999999988876542 1223 5999999999999999999999732 3566666
Q ss_pred hhhHHHHhhcchHHHHHHHHHHHh-------cCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCc
Q 003476 399 SEFVELYVGMGASRVRDLFARAKK-------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSA 471 (816)
Q Consensus 399 s~~~~~~vG~~~~~vr~lF~~A~~-------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ 471 (816)
++... ...+++..+.... ..+.||+|||+|.+.... -+.|+..|+.+.. .
T Consensus 73 sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~a---------------q~aL~~~lE~~~~--~ 129 (319)
T PLN03025 73 SDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGA---------------QQALRRTMEIYSN--T 129 (319)
T ss_pred ccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHH---------------HHHHHHHHhcccC--C
Confidence 54321 1234443332111 235799999999985322 2445555553332 3
Q ss_pred EEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHH
Q 003476 472 VIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEA 551 (816)
Q Consensus 472 ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneA 551 (816)
..+|.+||.+..+.++|++ |. ..+.|+.|+.++....++..+++.++.+.++ .++.++..+.| |++.+++..
T Consensus 130 t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~-~l~~i~~~~~g----DlR~aln~L 201 (319)
T PLN03025 130 TRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPE-GLEAIIFTADG----DMRQALNNL 201 (319)
T ss_pred ceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC----CHHHHHHHH
Confidence 4566678888888899987 54 4789999999999999999998888877655 47777777654 455444443
Q ss_pred HHHHHHhCCccccHHHHHHH
Q 003476 552 ALLAGRLNKVVVEKIDFIHA 571 (816)
Q Consensus 552 a~~A~r~~~~~It~~d~~~A 571 (816)
-..+ .+...|+.+++...
T Consensus 202 q~~~--~~~~~i~~~~v~~~ 219 (319)
T PLN03025 202 QATH--SGFGFVNQENVFKV 219 (319)
T ss_pred HHHH--hcCCCCCHHHHHHH
Confidence 3222 13346777766543
No 89
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.61 E-value=5.4e-15 Score=178.77 Aligned_cols=218 Identities=19% Similarity=0.279 Sum_probs=148.8
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH--------
Q 003476 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-------- 403 (816)
Q Consensus 332 ~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~-------- 403 (816)
+|+.|++++|+.+.+.+...+.. +......++|+||||||||++++++|+.++.+|+.++.+...+
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRV------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhc------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 46999999999998877654321 1123346999999999999999999999999999988765432
Q ss_pred -HHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccC-----CC--------CC
Q 003476 404 -LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG-----FD--------SN 469 (816)
Q Consensus 404 -~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg-----~~--------~~ 469 (816)
.|.|....++...+..+....| ||+|||||.+....++. ..+.|+..+|. |. .-
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g~-----------~~~aLlevld~~~~~~~~d~~~~~~~dl 463 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRGD-----------PASALLEVLDPEQNVAFSDHYLEVDYDL 463 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCCC-----------HHHHHHHHhccccEEEEecccccccccC
Confidence 4677777778888877776667 89999999998653321 23455555552 11 12
Q ss_pred CcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcC-----C-----CCCccccCHHHHHh-hCCC
Q 003476 470 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK-----E-----LPLAKDIDLGDIAS-MTTG 538 (816)
Q Consensus 470 ~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~-----~-----l~l~~dvdl~~LA~-~t~G 538 (816)
++|++|||+|.. .|+++|++ ||+ .|.+..++.++..+|.+.|+..+ + +.+.+++ +..+++ .+..
T Consensus 464 s~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~a-i~~ii~~yt~e 538 (784)
T PRK10787 464 SDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSA-IIGIIRYYTRE 538 (784)
T ss_pred CceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHH-HHHHHHhCCcc
Confidence 689999999987 59999998 996 89999999999999999998421 1 1122221 333443 2333
Q ss_pred CCHHHHHHHHHHHHHHHHHh----C---CccccHHHHHHHH
Q 003476 539 FTGADLANLVNEAALLAGRL----N---KVVVEKIDFIHAV 572 (816)
Q Consensus 539 ~SgaDL~~LvneAa~~A~r~----~---~~~It~~d~~~Al 572 (816)
+-.+.|++++...+..+..+ + ...|+.+++.+.+
T Consensus 539 ~GaR~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~l 579 (784)
T PRK10787 539 AGVRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYL 579 (784)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHh
Confidence 33466666666544333321 1 1346666655554
No 90
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.61 E-value=1.2e-14 Score=160.22 Aligned_cols=208 Identities=20% Similarity=0.263 Sum_probs=151.3
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc----------
Q 003476 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP---------- 392 (816)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvp---------- 392 (816)
.++.++.+|+|++|++++++.|.+.+.. .+.|+.+||+||||+|||++|+++|..+.++
T Consensus 5 ~~~~rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~ 73 (355)
T TIGR02397 5 ARKYRPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNE 73 (355)
T ss_pred HHHhCCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 3456778999999999999988886642 2456779999999999999999999987543
Q ss_pred --------------EEEeechhhHHHHhhcchHHHHHHHHHHHhc----CCEEEEEcCccchhhccCCccccccchHHHH
Q 003476 393 --------------FISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQ 454 (816)
Q Consensus 393 --------------fi~is~s~~~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~ 454 (816)
++.+++.+ ..+...++++++.+... ...||+|||+|.+.. .
T Consensus 74 c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~---------------~ 132 (355)
T TIGR02397 74 CESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK---------------S 132 (355)
T ss_pred CHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH---------------H
Confidence 22222210 12334577777776532 235999999998742 2
Q ss_pred HHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHh
Q 003476 455 TLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIAS 534 (816)
Q Consensus 455 ~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~ 534 (816)
..+.|+..++.. ...+++|.+||.++.+.+++.+ |+ ..+.+.+|+.++..++++.++++.++.++++ .+..++.
T Consensus 133 ~~~~Ll~~le~~--~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~-a~~~l~~ 206 (355)
T TIGR02397 133 AFNALLKTLEEP--PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDE-ALELIAR 206 (355)
T ss_pred HHHHHHHHHhCC--ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHH
Confidence 457788888743 3467777788888888888887 66 4789999999999999999998877666543 4666777
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHH
Q 003476 535 MTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (816)
Q Consensus 535 ~t~G~SgaDL~~LvneAa~~A~r~~~~~It~~d~~~Al~ 573 (816)
.+.| +.+.+.+.++.+...+ ...|+.+++.+++.
T Consensus 207 ~~~g-~~~~a~~~lekl~~~~----~~~it~~~v~~~~~ 240 (355)
T TIGR02397 207 AADG-SLRDALSLLDQLISFG----NGNITYEDVNELLG 240 (355)
T ss_pred HcCC-ChHHHHHHHHHHHhhc----CCCCCHHHHHHHhC
Confidence 7765 6777777777766543 23489888887663
No 91
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.61 E-value=2.2e-14 Score=156.11 Aligned_cols=207 Identities=19% Similarity=0.263 Sum_probs=135.0
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 003476 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (816)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~ 402 (816)
.++.++.+|+|++|++++++.+...+.. .+.|..+||+||||+|||++|++++++.+.+++.+++++ .
T Consensus 12 ~~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~ 79 (316)
T PHA02544 12 EQKYRPSTIDECILPAADKETFKSIVKK-----------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-C 79 (316)
T ss_pred eeccCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-c
Confidence 4567788999999999999988887651 245666777999999999999999999999999998876 1
Q ss_pred HHHhhcchHHHHHHHHHHH-hcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCC
Q 003476 403 ELYVGMGASRVRDLFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (816)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~p 481 (816)
. .......+.+...... ...++||+|||+|.+... .....+..+ |+... .++.+|++||.+
T Consensus 80 ~--~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~-----------~~~~~L~~~---le~~~--~~~~~Ilt~n~~ 141 (316)
T PHA02544 80 R--IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA-----------DAQRHLRSF---MEAYS--KNCSFIITANNK 141 (316)
T ss_pred c--HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH-----------HHHHHHHHH---HHhcC--CCceEEEEcCCh
Confidence 1 1111111222111111 135689999999987311 112233333 44322 456788899999
Q ss_pred CCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHh-------cCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 003476 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS-------KKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL 554 (816)
Q Consensus 482 d~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~-------~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~ 554 (816)
+.+++++++ ||. .+.++.|+.+++.++++.++. +.+.++.++ .+..++....| |++.+++.....
T Consensus 142 ~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~-al~~l~~~~~~----d~r~~l~~l~~~ 213 (316)
T PHA02544 142 NGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMK-VLAALVKKNFP----DFRRTINELQRY 213 (316)
T ss_pred hhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHhcCC----CHHHHHHHHHHH
Confidence 999999998 775 789999999999877665433 234444333 24556655443 556666555444
Q ss_pred HHHhCCccccHHHHHH
Q 003476 555 AGRLNKVVVEKIDFIH 570 (816)
Q Consensus 555 A~r~~~~~It~~d~~~ 570 (816)
+. ...++..++..
T Consensus 214 ~~---~~~i~~~~l~~ 226 (316)
T PHA02544 214 AS---TGKIDAGILSE 226 (316)
T ss_pred Hc---cCCCCHHHHHH
Confidence 32 23466555443
No 92
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.61 E-value=1.3e-14 Score=156.73 Aligned_cols=213 Identities=30% Similarity=0.428 Sum_probs=146.5
Q ss_pred cccCCCccccccccCChHHHHH---HHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc---EEE
Q 003476 322 VSEQGDTITFADVAGVDEAKEE---LEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP---FIS 395 (816)
Q Consensus 322 ~~~~~~~vtf~DV~G~ee~K~~---L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvp---fi~ 395 (816)
+++..++-+++|.+|++++..+ |+.+++.- +.| .++|+||||||||+|||.|+....-+ |+.
T Consensus 128 LaermRPktL~dyvGQ~hlv~q~gllrs~ieq~-----------~ip-SmIlWGppG~GKTtlArlia~tsk~~Syrfve 195 (554)
T KOG2028|consen 128 LAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQN-----------RIP-SMILWGPPGTGKTTLARLIASTSKKHSYRFVE 195 (554)
T ss_pred hhhhcCcchHHHhcchhhhcCcchHHHHHHHcC-----------CCC-ceEEecCCCCchHHHHHHHHhhcCCCceEEEE
Confidence 4555667789999999987654 23333221 222 58999999999999999999988766 888
Q ss_pred eechhhHHHHhhcchHHHHHHHHHHHhc-----CCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCC
Q 003476 396 CSASEFVELYVGMGASRVRDLFARAKKE-----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNS 470 (816)
Q Consensus 396 is~s~~~~~~vG~~~~~vr~lF~~A~~~-----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~ 470 (816)
+++. ..+...+|++|++++.. ...|||||||+.+.+..++. ||-.++ ++
T Consensus 196 lSAt-------~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~---------------fLP~VE----~G 249 (554)
T KOG2028|consen 196 LSAT-------NAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDT---------------FLPHVE----NG 249 (554)
T ss_pred Eecc-------ccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhc---------------ccceec----cC
Confidence 7763 34557799999999753 45799999999998766532 333333 56
Q ss_pred cEEEEEEc--CCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHh---cC---CCCCcc------ccCHHHHHhhC
Q 003476 471 AVIVLGAT--NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS---KK---ELPLAK------DIDLGDIASMT 536 (816)
Q Consensus 471 ~ViVIaAT--N~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~---~~---~l~l~~------dvdl~~LA~~t 536 (816)
.|++|+|| |....|..+|++++| ++.+.....+....||.+.+. +. ..++.. +--++.++..+
T Consensus 250 ~I~lIGATTENPSFqln~aLlSRC~---VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~ls 326 (554)
T KOG2028|consen 250 DITLIGATTENPSFQLNAALLSRCR---VFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLS 326 (554)
T ss_pred ceEEEecccCCCccchhHHHHhccc---eeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhc
Confidence 78899888 666789999998544 788899999999999988554 11 112222 11266788888
Q ss_pred CCCCHHHHHHHHHHH-HHHHHHhC---CccccHHHHHHHHHHHH
Q 003476 537 TGFTGADLANLVNEA-ALLAGRLN---KVVVEKIDFIHAVERSI 576 (816)
Q Consensus 537 ~G~SgaDL~~LvneA-a~~A~r~~---~~~It~~d~~~Al~r~i 576 (816)
.|-..+.|..| ..+ .+.+.|.+ +..++.+|+.+++.+..
T Consensus 327 dGDaR~aLN~L-ems~~m~~tr~g~~~~~~lSidDvke~lq~s~ 369 (554)
T KOG2028|consen 327 DGDARAALNAL-EMSLSMFCTRSGQSSRVLLSIDDVKEGLQRSH 369 (554)
T ss_pred CchHHHHHHHH-HHHHHHHHhhcCCcccceecHHHHHHHHhhcc
Confidence 88554444332 222 23333433 45788889888886643
No 93
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.60 E-value=2e-14 Score=149.50 Aligned_cols=202 Identities=17% Similarity=0.170 Sum_probs=136.5
Q ss_pred CccccccccC--ChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhh
Q 003476 327 DTITFADVAG--VDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (816)
Q Consensus 327 ~~vtf~DV~G--~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~ 401 (816)
++.+|+++++ .+.+...++++.. +...+.+++|+||||||||+||+++++++ +.+++.+++.++
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 4578999773 3455555544432 22345679999999999999999999875 678888888776
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCC-
Q 003476 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR- 480 (816)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~- 480 (816)
.+.. . ......+|+|||+|.+... ....+..++..+. .+...++|.+++.
T Consensus 82 ~~~~------------~--~~~~~~~liiDdi~~l~~~------------~~~~L~~~~~~~~---~~~~~~vl~~~~~~ 132 (227)
T PRK08903 82 LLAF------------D--FDPEAELYAVDDVERLDDA------------QQIALFNLFNRVR---AHGQGALLVAGPAA 132 (227)
T ss_pred HHHH------------h--hcccCCEEEEeChhhcCch------------HHHHHHHHHHHHH---HcCCcEEEEeCCCC
Confidence 4321 1 1223569999999987421 1223333444332 2334334444443
Q ss_pred C--CCCCcccCCCCcc--cceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 003476 481 S--DVLDPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAG 556 (816)
Q Consensus 481 p--d~LDpALlRpGRF--dr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~ 556 (816)
| ..+.+.|.+ || ...+.+++|+.+++..+++.++.+.++.++++ .++.|+...+| +.+++.++++.-...|.
T Consensus 133 ~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~-al~~L~~~~~g-n~~~l~~~l~~l~~~~~ 208 (227)
T PRK08903 133 PLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADE-VPDYLLTHFRR-DMPSLMALLDALDRYSL 208 (227)
T ss_pred HHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhccC-CHHHHHHHHHHHHHHHH
Confidence 3 134566665 65 56899999999999999998888777777665 47778886555 89999999998665554
Q ss_pred HhCCccccHHHHHHHHH
Q 003476 557 RLNKVVVEKIDFIHAVE 573 (816)
Q Consensus 557 r~~~~~It~~d~~~Al~ 573 (816)
.. +..|+...+.+++.
T Consensus 209 ~~-~~~i~~~~~~~~l~ 224 (227)
T PRK08903 209 EQ-KRPVTLPLLREMLA 224 (227)
T ss_pred Hh-CCCCCHHHHHHHHh
Confidence 44 46888888777763
No 94
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=1.2e-14 Score=169.11 Aligned_cols=212 Identities=19% Similarity=0.249 Sum_probs=151.4
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-------EEEe
Q 003476 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC 396 (816)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvp-------fi~i 396 (816)
.+.++.+|+||+|++.+++.|...+.. .+.++.+||+||||+|||++|+++|+.+++. +-.+
T Consensus 8 ~k~rP~~f~divGq~~v~~~L~~~i~~-----------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C 76 (527)
T PRK14969 8 RKWRPKSFSELVGQEHVVRALTNALEQ-----------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVC 76 (527)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 345667999999999999988887653 2456678999999999999999999998763 1111
Q ss_pred e-chhhH-----HH-----HhhcchHHHHHHHHHHHhc----CCEEEEEcCccchhhccCCccccccchHHHHHHHHHHh
Q 003476 397 S-ASEFV-----EL-----YVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (816)
Q Consensus 397 s-~s~~~-----~~-----~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~ 461 (816)
+ |..+. +. -...+...+|++.+.+... ...|++|||+|.+.. ...|.||.
T Consensus 77 ~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~---------------~a~naLLK 141 (527)
T PRK14969 77 SACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK---------------SAFNAMLK 141 (527)
T ss_pred HHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH---------------HHHHHHHH
Confidence 0 10000 00 0012345677777766432 235999999998852 34688899
Q ss_pred hccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCH
Q 003476 462 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541 (816)
Q Consensus 462 emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sg 541 (816)
.|+. +...+++|.+|+.+..+.+.+++ |. ..+.|..++.++..+.++..+.+.++.+.++ .+..++..+.| +.
T Consensus 142 ~LEe--pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~-al~~la~~s~G-sl 214 (527)
T PRK14969 142 TLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDAT-ALQLLARAAAG-SM 214 (527)
T ss_pred HHhC--CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CH
Confidence 8884 34567777788888888888876 54 5899999999999999988887776654433 46778888766 78
Q ss_pred HHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003476 542 ADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (816)
Q Consensus 542 aDL~~LvneAa~~A~r~~~~~It~~d~~~Al 572 (816)
+++.++++.+... +...|+.+++...+
T Consensus 215 r~al~lldqai~~----~~~~I~~~~v~~~~ 241 (527)
T PRK14969 215 RDALSLLDQAIAY----GGGTVNESEVRAML 241 (527)
T ss_pred HHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 8888998887654 34567777766654
No 95
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=1.6e-14 Score=169.12 Aligned_cols=208 Identities=19% Similarity=0.238 Sum_probs=149.6
Q ss_pred cccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc---------
Q 003476 322 VSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP--------- 392 (816)
Q Consensus 322 ~~~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvp--------- 392 (816)
+.++.++.+|+||+|++.+++.|...+.. .+.+..+||+||||||||++|+++|+.+.+.
T Consensus 6 la~KyRP~sf~dIiGQe~v~~~L~~ai~~-----------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg 74 (624)
T PRK14959 6 LTARYRPQTFAEVAGQETVKAILSRAAQE-----------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCN 74 (624)
T ss_pred HHHHhCCCCHHHhcCCHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCc
Confidence 34566788999999999999998887753 2345679999999999999999999998763
Q ss_pred ---------------EEEeechhhHHHHhhcchHHHHHHHHHHH----hcCCEEEEEcCccchhhccCCccccccchHHH
Q 003476 393 ---------------FISCSASEFVELYVGMGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDERE 453 (816)
Q Consensus 393 ---------------fi~is~s~~~~~~vG~~~~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~ 453 (816)
++.+++.. ..+...++.+.+.+. .....||||||+|.+..
T Consensus 75 ~C~sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~--------------- 133 (624)
T PRK14959 75 TCEQCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR--------------- 133 (624)
T ss_pred ccHHHHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH---------------
Confidence 22222210 112234455433332 22346999999999852
Q ss_pred HHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHH
Q 003476 454 QTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIA 533 (816)
Q Consensus 454 ~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA 533 (816)
...|.|+..|+. ....+++|++||.++.+.+.+++ |+ .++.|..++.++...+|+..+.+.++.+.++ .++.++
T Consensus 134 ~a~naLLk~LEE--P~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~e-al~lIA 207 (624)
T PRK14959 134 EAFNALLKTLEE--PPARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPA-AVRLIA 207 (624)
T ss_pred HHHHHHHHHhhc--cCCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHH
Confidence 245788888874 33568888888888888888887 65 4789999999999999998888776655544 477788
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003476 534 SMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (816)
Q Consensus 534 ~~t~G~SgaDL~~LvneAa~~A~r~~~~~It~~d~~~Al 572 (816)
..+.| +.+++.+++.+++ + .+...|+.+++..++
T Consensus 208 ~~s~G-dlR~Al~lLeqll--~--~g~~~It~d~V~~~l 241 (624)
T PRK14959 208 RRAAG-SVRDSMSLLGQVL--A--LGESRLTIDGARGVL 241 (624)
T ss_pred HHcCC-CHHHHHHHHHHHH--H--hcCCCcCHHHHHHHh
Confidence 87765 6677777777553 2 244578888887776
No 96
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.59 E-value=1.6e-14 Score=176.65 Aligned_cols=167 Identities=26% Similarity=0.389 Sum_probs=127.9
Q ss_pred CCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------CCcEEE
Q 003476 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFIS 395 (816)
Q Consensus 326 ~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el----------gvpfi~ 395 (816)
-.+-++++|+|.++. ++.+++-|.. +...+++|+||||||||++|+++|..+ +.+++.
T Consensus 172 ~r~~~l~~vigr~~e---i~~~i~iL~r---------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~ 239 (857)
T PRK10865 172 AEQGKLDPVIGRDEE---IRRTIQVLQR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 239 (857)
T ss_pred HhcCCCCcCCCCHHH---HHHHHHHHhc---------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEE
Confidence 345678999999985 5555544433 233568999999999999999999987 789999
Q ss_pred eechhhHH--HHhhcchHHHHHHHHHHHh-cCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcE
Q 003476 396 CSASEFVE--LYVGMGASRVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAV 472 (816)
Q Consensus 396 is~s~~~~--~~vG~~~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~V 472 (816)
++.+.+.. .|.|..+.+++.+|+.+.. ..|+||||||+|.+.+...+. +..+ .-|.|...+ .++.+
T Consensus 240 l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~---~~~d----~~~~lkp~l----~~g~l 308 (857)
T PRK10865 240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD---GAMD----AGNMLKPAL----ARGEL 308 (857)
T ss_pred EehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc---cchh----HHHHhcchh----hcCCC
Confidence 98888763 5888899999999998644 568999999999998654321 1211 122333333 35789
Q ss_pred EEEEEcCCCC-----CCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhc
Q 003476 473 IVLGATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK 518 (816)
Q Consensus 473 iVIaATN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~ 518 (816)
.+|+||+..+ .+|+++.| ||+ .|.+..|+.+++..||+.+..+
T Consensus 309 ~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~ 356 (857)
T PRK10865 309 HCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKER 356 (857)
T ss_pred eEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhh
Confidence 9999999876 48999999 998 6889999999999999877654
No 97
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.59 E-value=6.4e-14 Score=147.34 Aligned_cols=206 Identities=14% Similarity=0.140 Sum_probs=135.8
Q ss_pred Ccccccccc-C-ChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhh
Q 003476 327 DTITFADVA-G-VDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (816)
Q Consensus 327 ~~vtf~DV~-G-~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~ 401 (816)
+..+|++.+ | ...+...++.+.. . ..+..++|+||||||||+|++++++++ +..+.+++..+.
T Consensus 17 ~~~~fd~f~~~~n~~a~~~l~~~~~---~---------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~ 84 (235)
T PRK08084 17 DDETFASFYPGDNDSLLAALQNALR---Q---------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR 84 (235)
T ss_pred CcCCccccccCccHHHHHHHHHHHh---C---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH
Confidence 456788887 4 3444444444321 1 123479999999999999999999875 344555655543
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCc-EEEEEEcCC
Q 003476 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSA-VIVLGATNR 480 (816)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~-ViVIaATN~ 480 (816)
... ..++++.... ..+|+|||+|.+..+ ...+..+..+++.+- .+.+ .+++++++.
T Consensus 85 ~~~--------~~~~~~~~~~--~dlliiDdi~~~~~~----------~~~~~~lf~l~n~~~---e~g~~~li~ts~~~ 141 (235)
T PRK08084 85 AWF--------VPEVLEGMEQ--LSLVCIDNIECIAGD----------ELWEMAIFDLYNRIL---ESGRTRLLITGDRP 141 (235)
T ss_pred hhh--------hHHHHHHhhh--CCEEEEeChhhhcCC----------HHHHHHHHHHHHHHH---HcCCCeEEEeCCCC
Confidence 221 1122222222 248999999988532 223344545554432 1233 355555566
Q ss_pred CCC---CCcccCCCCccc--ceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 003476 481 SDV---LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLA 555 (816)
Q Consensus 481 pd~---LDpALlRpGRFd--r~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A 555 (816)
|.. +.|.|++ |+. ..+.+.+|+.+++.++++.++...++.+++++ ++.|+++..| +.+.+.++++.....+
T Consensus 142 p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v-~~~L~~~~~~-d~r~l~~~l~~l~~~~ 217 (235)
T PRK08084 142 PRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDV-GRFLLKRLDR-EMRTLFMTLDQLDRAS 217 (235)
T ss_pred hHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhhcC-CHHHHHHHHHHHHHHH
Confidence 655 5788988 764 78999999999999999998887778777665 7888988887 8899999998865344
Q ss_pred HHhCCccccHHHHHHHH
Q 003476 556 GRLNKVVVEKIDFIHAV 572 (816)
Q Consensus 556 ~r~~~~~It~~d~~~Al 572 (816)
.. .+..||...+.+++
T Consensus 218 l~-~~~~it~~~~k~~l 233 (235)
T PRK08084 218 IT-AQRKLTIPFVKEIL 233 (235)
T ss_pred Hh-cCCCCCHHHHHHHH
Confidence 33 34558887777665
No 98
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.59 E-value=3.4e-14 Score=162.33 Aligned_cols=226 Identities=18% Similarity=0.213 Sum_probs=146.9
Q ss_pred CCcccccccc-CChH--HHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeech
Q 003476 326 GDTITFADVA-GVDE--AKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (816)
Q Consensus 326 ~~~vtf~DV~-G~ee--~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s 399 (816)
.+..||++.+ |... +...++++.+ ++. .......++++||||||+|||+|++++++++ +..++++++.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~---~~~---~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTK---VSE---QGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHh---ccc---cccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 4667899987 4332 2233333322 110 0111233679999999999999999999875 6889999998
Q ss_pred hhHHHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcC
Q 003476 400 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (816)
Q Consensus 400 ~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN 479 (816)
+|...+...-...-.+.|.... ..+++|+|||++.+..... ..++.-.++|.+.. ....+|+++++
T Consensus 179 ~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~------~qeelf~l~N~l~~-------~~k~IIlts~~ 244 (445)
T PRK12422 179 LFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA------TQEEFFHTFNSLHT-------EGKLIVISSTC 244 (445)
T ss_pred HHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh------hHHHHHHHHHHHHH-------CCCcEEEecCC
Confidence 8776543322111122344333 2456999999999853221 12233334444432 12345555555
Q ss_pred CCC---CCCcccCCCCccc--ceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHH-
Q 003476 480 RSD---VLDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAAL- 553 (816)
Q Consensus 480 ~pd---~LDpALlRpGRFd--r~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~- 553 (816)
.|. .+++.|.+ ||. ..+.+.+|+.++|.+||+..+...++.+++++ ++.|+....+ +.++|.+.++..+.
T Consensus 245 ~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~ev-l~~la~~~~~-dir~L~g~l~~l~~~ 320 (445)
T PRK12422 245 APQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETA-LDFLIEALSS-NVKSLLHALTLLAKR 320 (445)
T ss_pred CHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 553 56788888 885 78899999999999999999988877776654 6667776665 67889888888753
Q ss_pred --HHHHhCCccccHHHHHHHHHHHH
Q 003476 554 --LAGRLNKVVVEKIDFIHAVERSI 576 (816)
Q Consensus 554 --~A~r~~~~~It~~d~~~Al~r~i 576 (816)
.+.. ....|+.+++.+++...+
T Consensus 321 ~a~~~~-~~~~i~~~~~~~~l~~~~ 344 (445)
T PRK12422 321 VAYKKL-SHQLLYVDDIKALLHDVL 344 (445)
T ss_pred HHHHHh-hCCCCCHHHHHHHHHHhh
Confidence 2222 235689999999987654
No 99
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=2.3e-14 Score=173.53 Aligned_cols=211 Identities=21% Similarity=0.181 Sum_probs=148.6
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEE-----Eeec
Q 003476 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI-----SCSA 398 (816)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi-----~is~ 398 (816)
.+++..+|+||+|++.+++.|+..+.. .+.++.+||+||+|||||++|+.||+.++|.-- .-.|
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C 75 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALDS-----------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC 75 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc
Confidence 456788999999999999988887653 245667899999999999999999999876210 0012
Q ss_pred hhhHHHHhh---------------cchHHHHHHHHHHH----hcCCEEEEEcCccchhhccCCccccccchHHHHHHHHH
Q 003476 399 SEFVELYVG---------------MGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQL 459 (816)
Q Consensus 399 s~~~~~~vG---------------~~~~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~L 459 (816)
..+..+..| .+...+|++.+.+. .....|+||||+|.|.. ...|.|
T Consensus 76 ~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~---------------~a~NaL 140 (824)
T PRK07764 76 DSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP---------------QGFNAL 140 (824)
T ss_pred HHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH---------------HHHHHH
Confidence 122211111 12345566544433 23446999999999853 356888
Q ss_pred HhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCC
Q 003476 460 LTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGF 539 (816)
Q Consensus 460 L~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~ 539 (816)
|+.|+.. ...+++|++|+.++.|-++|++ |. .++.|..++.++..++|+..+.+.++.+.++ .+..|++.+.|
T Consensus 141 LK~LEEp--P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~e-al~lLa~~sgG- 213 (824)
T PRK07764 141 LKIVEEP--PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPG-VLPLVIRAGGG- 213 (824)
T ss_pred HHHHhCC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-
Confidence 9888843 3567888888888889888887 53 4899999999999999999998877665443 46677777766
Q ss_pred CHHHHHHHHHHHHHHHHHhCCccccHHHHHH
Q 003476 540 TGADLANLVNEAALLAGRLNKVVVEKIDFIH 570 (816)
Q Consensus 540 SgaDL~~LvneAa~~A~r~~~~~It~~d~~~ 570 (816)
+.+++.+++++.+..+ +...|+.+++..
T Consensus 214 dlR~Al~eLEKLia~~---~~~~IT~e~V~a 241 (824)
T PRK07764 214 SVRDSLSVLDQLLAGA---GPEGVTYERAVA 241 (824)
T ss_pred CHHHHHHHHHHHHhhc---CCCCCCHHHHHH
Confidence 7888888888755332 234466665543
No 100
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=3.5e-14 Score=158.20 Aligned_cols=213 Identities=18% Similarity=0.252 Sum_probs=147.2
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhh-
Q 003476 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF- 401 (816)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~- 401 (816)
.++.++.+|+||+|++.+++.+...+.. .+.|+++|||||||+|||++|+++|+.+.++.....+..+
T Consensus 8 ~~k~rP~~~~~iig~~~~~~~l~~~i~~-----------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~ 76 (367)
T PRK14970 8 ARKYRPQTFDDVVGQSHITNTLLNAIEN-----------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFS 76 (367)
T ss_pred HHHHCCCcHHhcCCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 3556788999999999998887776642 2456789999999999999999999987653211111100
Q ss_pred -----HHHHhhcchHHHHHHHHHHHh----cCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcE
Q 003476 402 -----VELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAV 472 (816)
Q Consensus 402 -----~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~V 472 (816)
.+.....+...++++++.+.. ..+.||+|||+|.+.. ..++.|+..++.. ....
T Consensus 77 ~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~---------------~~~~~ll~~le~~--~~~~ 139 (367)
T PRK14970 77 FNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS---------------AAFNAFLKTLEEP--PAHA 139 (367)
T ss_pred cceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH---------------HHHHHHHHHHhCC--CCce
Confidence 000111223567777776653 2346999999997742 2356777777642 3345
Q ss_pred EEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHH
Q 003476 473 IVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAA 552 (816)
Q Consensus 473 iVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa 552 (816)
++|.+|+.+..+.+++.+ |+ ..+.++.|+.++...++...+.+.++.++++ .++.++..+.| +.+.+.+.++...
T Consensus 140 ~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~-al~~l~~~~~g-dlr~~~~~lekl~ 214 (367)
T PRK14970 140 IFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDD-ALHIIAQKADG-ALRDALSIFDRVV 214 (367)
T ss_pred EEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 666667777888899887 54 3789999999999999999888877766554 47778877755 6677777776665
Q ss_pred HHHHHhCCccccHHHHHHHH
Q 003476 553 LLAGRLNKVVVEKIDFIHAV 572 (816)
Q Consensus 553 ~~A~r~~~~~It~~d~~~Al 572 (816)
..+ +.. |+.+++...+
T Consensus 215 ~y~---~~~-it~~~v~~~~ 230 (367)
T PRK14970 215 TFC---GKN-ITRQAVTENL 230 (367)
T ss_pred Hhc---CCC-CCHHHHHHHh
Confidence 544 223 7877766655
No 101
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=3.1e-14 Score=166.85 Aligned_cols=214 Identities=20% Similarity=0.214 Sum_probs=151.8
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-------EEE
Q 003476 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FIS 395 (816)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvp-------fi~ 395 (816)
+.+.++.+|+||+|++.+++.|+..+.. .+.|+.+||+||+|||||++|+++|+.+++. +-.
T Consensus 4 ~~kyRP~~f~eivGq~~i~~~L~~~i~~-----------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~ 72 (584)
T PRK14952 4 YRKYRPATFAEVVGQEHVTEPLSSALDA-----------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGV 72 (584)
T ss_pred HHHhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccc
Confidence 3456778999999999999998887642 3466678999999999999999999988752 111
Q ss_pred e-echhhH----------HH--HhhcchHHHHHHHHHHHh----cCCEEEEEcCccchhhccCCccccccchHHHHHHHH
Q 003476 396 C-SASEFV----------EL--YVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQ 458 (816)
Q Consensus 396 i-s~s~~~----------~~--~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~ 458 (816)
| +|-.+. +. -...+...+|++.+.+.. ....|++|||+|.+.. ...|.
T Consensus 73 C~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~---------------~A~NA 137 (584)
T PRK14952 73 CESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT---------------AGFNA 137 (584)
T ss_pred cHHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH---------------HHHHH
Confidence 1 111111 00 001134556666555532 2235999999999852 35688
Q ss_pred HHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCC
Q 003476 459 LLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG 538 (816)
Q Consensus 459 LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G 538 (816)
||..|+. ....+++|.+|+.++.|.+++++ | ..++.|..++.++..+.++..+.+.++.+.++ .+..++..+.|
T Consensus 138 LLK~LEE--pp~~~~fIL~tte~~kll~TI~S--R-c~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~-al~~Ia~~s~G 211 (584)
T PRK14952 138 LLKIVEE--PPEHLIFIFATTEPEKVLPTIRS--R-THHYPFRLLPPRTMRALIARICEQEGVVVDDA-VYPLVIRAGGG 211 (584)
T ss_pred HHHHHhc--CCCCeEEEEEeCChHhhHHHHHH--h-ceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC
Confidence 9999883 44578888888888999999987 5 35899999999999999999998877665443 46667777655
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003476 539 FTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (816)
Q Consensus 539 ~SgaDL~~LvneAa~~A~r~~~~~It~~d~~~Al 572 (816)
+.+++.++++..+..+ +...|+.+++...+
T Consensus 212 -dlR~aln~Ldql~~~~---~~~~It~~~v~~ll 241 (584)
T PRK14952 212 -SPRDTLSVLDQLLAGA---ADTHVTYQRALGLL 241 (584)
T ss_pred -CHHHHHHHHHHHHhcc---CCCCcCHHHHHHHH
Confidence 7888888888875443 23457776665543
No 102
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.57 E-value=3.2e-14 Score=160.04 Aligned_cols=190 Identities=20% Similarity=0.296 Sum_probs=130.3
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEE------Ee-echhhH
Q 003476 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI------SC-SASEFV 402 (816)
Q Consensus 330 tf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi------~i-s~s~~~ 402 (816)
.|++|+|++.+++.|++.+..-+.. +...+.+.|+++||+||||+|||++|+++|..+.+.-- .+ +|..+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~--~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARAD--VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccc--ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 5999999999999999998864432 33455668899999999999999999999998755310 00 011110
Q ss_pred H------HH-----hhcchHHHHHHHHHHHhc----CCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCC
Q 003476 403 E------LY-----VGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD 467 (816)
Q Consensus 403 ~------~~-----vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~ 467 (816)
. .+ ...+...+|++++.+... ...|+||||+|.+... ..|.||..|+..
T Consensus 81 ~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~---------------aanaLLk~LEep- 144 (394)
T PRK07940 81 AGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER---------------AANALLKAVEEP- 144 (394)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH---------------HHHHHHHHhhcC-
Confidence 0 00 112335688888877642 3469999999998532 347888888743
Q ss_pred CCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHH
Q 003476 468 SNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANL 547 (816)
Q Consensus 468 ~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~L 547 (816)
..++++|.+|+.++.|.|++++ |+ ..+.|++|+.++..++|.... ++ . +.....++..+.|..+..+.-+
T Consensus 145 -~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~--~-~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 145 -PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GV--D-PETARRAARASQGHIGRARRLA 214 (394)
T ss_pred -CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CC--C-HHHHHHHHHHcCCCHHHHHHHh
Confidence 3345555555558999999998 64 589999999999887776322 22 2 2235678888888666555443
No 103
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=2.5e-14 Score=168.21 Aligned_cols=211 Identities=19% Similarity=0.243 Sum_probs=152.2
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE-------EEe
Q 003476 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------ISC 396 (816)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpf-------i~i 396 (816)
.+.++.+|+||+|++++++.|...+.. .+.++.+||+||+|+|||++|+++|+.++++- -.+
T Consensus 8 ~k~RP~~f~~iiGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c 76 (576)
T PRK14965 8 RKYRPQTFSDLTGQEHVSRTLQNAIDT-----------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC 76 (576)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence 455678999999999999998887653 24677789999999999999999999986531 111
Q ss_pred -echhh--------HH--HHhhcchHHHHHHHHHHHhc----CCEEEEEcCccchhhccCCccccccchHHHHHHHHHHh
Q 003476 397 -SASEF--------VE--LYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (816)
Q Consensus 397 -s~s~~--------~~--~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~ 461 (816)
+|.++ .+ .....+...++++.+.+... ...|++|||+|.+.. ...|.|+.
T Consensus 77 ~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~---------------~a~naLLk 141 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST---------------NAFNALLK 141 (576)
T ss_pred HHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH---------------HHHHHHHH
Confidence 11111 00 00112345677777766532 225999999998852 34588999
Q ss_pred hccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCH
Q 003476 462 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541 (816)
Q Consensus 462 emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sg 541 (816)
.|+. +...+++|.+|+.++.|.+.+++ |. ..+.|..++.++....++..+.+.++.++++ .+..+++.+.| +.
T Consensus 142 ~LEe--pp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~-al~~la~~a~G-~l 214 (576)
T PRK14965 142 TLEE--PPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDA-ALALVARKGDG-SM 214 (576)
T ss_pred HHHc--CCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHcCC-CH
Confidence 8884 44578888888889999999987 54 4788999999999999998888877766554 47778888876 77
Q ss_pred HHHHHHHHHHHHHHHHhCCccccHHHHHHH
Q 003476 542 ADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (816)
Q Consensus 542 aDL~~LvneAa~~A~r~~~~~It~~d~~~A 571 (816)
+++.++++.+..... ..|+.+++...
T Consensus 215 r~al~~Ldqliay~g----~~It~edV~~l 240 (576)
T PRK14965 215 RDSLSTLDQVLAFCG----DAVGDDDVAEL 240 (576)
T ss_pred HHHHHHHHHHHHhcc----CCCCHHHHHHH
Confidence 888888877665542 24777776554
No 104
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=3.6e-14 Score=165.00 Aligned_cols=213 Identities=20% Similarity=0.306 Sum_probs=148.8
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC-------cEEE
Q 003476 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFIS 395 (816)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgv-------pfi~ 395 (816)
.+..++.+|+||+|++.+++.|...+.. .+.+..+||+||||||||++|+++|+.+++ |+-.
T Consensus 7 a~KyRP~~f~diiGq~~~v~~L~~~i~~-----------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~ 75 (546)
T PRK14957 7 ARKYRPQSFAEVAGQQHALNSLVHALET-----------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNK 75 (546)
T ss_pred HHHHCcCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcc
Confidence 3455778999999999999988876642 245667999999999999999999998765 2111
Q ss_pred e-ech--------hhHHH--HhhcchHHHHHHHHHHHh----cCCEEEEEcCccchhhccCCccccccchHHHHHHHHHH
Q 003476 396 C-SAS--------EFVEL--YVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (816)
Q Consensus 396 i-s~s--------~~~~~--~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL 460 (816)
+ +|. ++.+. ....+...++++.+.+.. ....|+||||+|.+.. ...|.||
T Consensus 76 C~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~---------------~a~naLL 140 (546)
T PRK14957 76 CENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK---------------QSFNALL 140 (546)
T ss_pred cHHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH---------------HHHHHHH
Confidence 1 010 00000 011223455666665542 2346999999998852 3457888
Q ss_pred hhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCC
Q 003476 461 TEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 540 (816)
Q Consensus 461 ~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~S 540 (816)
..|+. +...+++|++|+.+..+.+++++ |. ..+.|..++.++....++..+.+.++.+.++ .+..++..+.| +
T Consensus 141 K~LEe--pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~-Al~~Ia~~s~G-d 213 (546)
T PRK14957 141 KTLEE--PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQ-SLEYIAYHAKG-S 213 (546)
T ss_pred HHHhc--CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-C
Confidence 88884 33566777777778888888877 54 5899999999999999998888776655433 46778888865 7
Q ss_pred HHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003476 541 GADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (816)
Q Consensus 541 gaDL~~LvneAa~~A~r~~~~~It~~d~~~Al 572 (816)
.+++.+++..+...+. ..|+.+++.+++
T Consensus 214 lR~alnlLek~i~~~~----~~It~~~V~~~l 241 (546)
T PRK14957 214 LRDALSLLDQAISFCG----GELKQAQIKQML 241 (546)
T ss_pred HHHHHHHHHHHHHhcc----CCCCHHHHHHHH
Confidence 8888888887765432 457777777654
No 105
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=3.8e-14 Score=165.29 Aligned_cols=212 Identities=17% Similarity=0.218 Sum_probs=150.2
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE-----EEee
Q 003476 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-----ISCS 397 (816)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpf-----i~is 397 (816)
+...++.+|+|++|++.+++.|...+.. .+.|+++||+||||+|||++|+++|..+.+.- ..-.
T Consensus 7 ~~KyRP~~F~dIIGQe~iv~~L~~aI~~-----------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~ 75 (605)
T PRK05896 7 YRKYRPHNFKQIIGQELIKKILVNAILN-----------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNS 75 (605)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 4556788999999999999888876532 35567899999999999999999999875410 0011
Q ss_pred chhhHH-----------H--HhhcchHHHHHHHHHHHhc----CCEEEEEcCccchhhccCCccccccchHHHHHHHHHH
Q 003476 398 ASEFVE-----------L--YVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (816)
Q Consensus 398 ~s~~~~-----------~--~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL 460 (816)
|..+.. . -...+...+|++.+.+... ...|++|||+|.+.. ...|.|+
T Consensus 76 C~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~---------------~A~NaLL 140 (605)
T PRK05896 76 CSVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST---------------SAWNALL 140 (605)
T ss_pred cHHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH---------------HHHHHHH
Confidence 111111 0 0012334577777665532 235999999998842 2357888
Q ss_pred hhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCC
Q 003476 461 TEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 540 (816)
Q Consensus 461 ~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~S 540 (816)
..|+. +...+++|.+|+.++.|.+++++ |+. .+.+..|+..+....++..+.+.+..++++ .+..++..+.| +
T Consensus 141 KtLEE--Pp~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~e-al~~La~lS~G-d 213 (605)
T PRK05896 141 KTLEE--PPKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDN-AIDKIADLADG-S 213 (605)
T ss_pred HHHHh--CCCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-c
Confidence 88873 34567888888889999999987 653 789999999999999999888777666554 36778888876 7
Q ss_pred HHHHHHHHHHHHHHHHHhCCccccHHHHHHH
Q 003476 541 GADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (816)
Q Consensus 541 gaDL~~LvneAa~~A~r~~~~~It~~d~~~A 571 (816)
.+++.++++.+...+ +. .|+.+++.+.
T Consensus 214 lR~AlnlLekL~~y~---~~-~It~e~V~el 240 (605)
T PRK05896 214 LRDGLSILDQLSTFK---NS-EIDIEDINKT 240 (605)
T ss_pred HHHHHHHHHHHHhhc---CC-CCCHHHHHHH
Confidence 788888888755443 22 2777776664
No 106
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.57 E-value=4.8e-14 Score=172.78 Aligned_cols=206 Identities=23% Similarity=0.350 Sum_probs=146.5
Q ss_pred CCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------CCcEEE
Q 003476 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFIS 395 (816)
Q Consensus 326 ~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el----------gvpfi~ 395 (816)
-..-.++.++|.++. ++.++.-|.. +...+++|+||||||||++|+++|..+ +.+++.
T Consensus 167 ~~~~~~~~~igr~~e---i~~~~~~l~r---------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 167 AREGKLDPVIGRDEE---IRRTIQVLSR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred hhCCCCCcCCCcHHH---HHHHHHHHhc---------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence 345578999999985 4444443322 234568999999999999999999975 678899
Q ss_pred eechhhH--HHHhhcchHHHHHHHHHHHh-cCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcE
Q 003476 396 CSASEFV--ELYVGMGASRVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAV 472 (816)
Q Consensus 396 is~s~~~--~~~vG~~~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~V 472 (816)
++.+.+. ..|.|..+.+++.+|+.+.. ..|+||||||||.+.+..... +. ....|.|...+ .+..+
T Consensus 235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~---~~----~d~~~~Lk~~l----~~g~i 303 (852)
T TIGR03346 235 LDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE---GA----MDAGNMLKPAL----ARGEL 303 (852)
T ss_pred eeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc---ch----hHHHHHhchhh----hcCce
Confidence 9888776 36888889999999999865 458999999999997543211 11 12233333332 35679
Q ss_pred EEEEEcCCCC-----CCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCc---cccCHHHHHhhCCCC-----
Q 003476 473 IVLGATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLA---KDIDLGDIASMTTGF----- 539 (816)
Q Consensus 473 iVIaATN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~---~dvdl~~LA~~t~G~----- 539 (816)
.+|++|+..+ .+|+++.| ||. .|.++.|+.+++..||+.+..+...... .+..+...+..+.+|
T Consensus 304 ~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~ 380 (852)
T TIGR03346 304 HCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRF 380 (852)
T ss_pred EEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccC
Confidence 9999998763 57999999 997 6899999999999999987665322111 122344555555554
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 003476 540 TGADLANLVNEAALLAGR 557 (816)
Q Consensus 540 SgaDL~~LvneAa~~A~r 557 (816)
-|.-.-.++++|+..+..
T Consensus 381 lPdkAidlld~a~a~~~~ 398 (852)
T TIGR03346 381 LPDKAIDLIDEAAARIRM 398 (852)
T ss_pred CchHHHHHHHHHHHHHHh
Confidence 345666888888765543
No 107
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.57 E-value=4.9e-14 Score=172.14 Aligned_cols=203 Identities=23% Similarity=0.334 Sum_probs=148.6
Q ss_pred ccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------CCcEEEee
Q 003476 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCS 397 (816)
Q Consensus 328 ~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el----------gvpfi~is 397 (816)
.-.+++|+|.++..+.+.+++. .+.+++++|+||||||||++|+++|.++ +.+++.++
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L~------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQILG------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHHc------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 4468899999997776666532 3455689999999999999999999976 47899999
Q ss_pred chhhHH--HHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEE
Q 003476 398 ASEFVE--LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVL 475 (816)
Q Consensus 398 ~s~~~~--~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVI 475 (816)
.+.+.. .|.|+.+.+++.+|+.++...++||||||||.+.+..+.. +.. ..-|-|...+. +..+.+|
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~---g~~----~~a~lLkp~l~----rg~l~~I 311 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE---GAI----DAANILKPALA----RGELQCI 311 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC---Ccc----cHHHHhHHHHh----CCCcEEE
Confidence 988873 6788889999999999988889999999999998654321 111 12233333332 5678999
Q ss_pred EEcCCCC-----CCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhc----CCCCCccccCHHHHHhhCCCCC-----H
Q 003476 476 GATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK----KELPLAKDIDLGDIASMTTGFT-----G 541 (816)
Q Consensus 476 aATN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~----~~l~l~~dvdl~~LA~~t~G~S-----g 541 (816)
++|+..+ ..|++|.+ ||. .|.++.|+.++...|++..... .++.+.++ .+..++..+.+|. |
T Consensus 312 gaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~de-al~~i~~ls~~yi~~r~lP 387 (821)
T CHL00095 312 GATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDK-ALEAAAKLSDQYIADRFLP 387 (821)
T ss_pred EeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhccCccccCc
Confidence 9998763 57999998 997 6899999999999998765432 23334333 3566666666553 4
Q ss_pred HHHHHHHHHHHHHHHH
Q 003476 542 ADLANLVNEAALLAGR 557 (816)
Q Consensus 542 aDL~~LvneAa~~A~r 557 (816)
...-.++++|+.....
T Consensus 388 dkaidlld~a~a~~~~ 403 (821)
T CHL00095 388 DKAIDLLDEAGSRVRL 403 (821)
T ss_pred hHHHHHHHHHHHHHHh
Confidence 5566888888765544
No 108
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=5.4e-14 Score=166.85 Aligned_cols=213 Identities=21% Similarity=0.273 Sum_probs=155.1
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEE---Eeech
Q 003476 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI---SCSAS 399 (816)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi---~is~s 399 (816)
+.+.++.+|+||+|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|..+.++-- .-.|.
T Consensus 9 ~~KyRP~~f~dIiGQe~~v~~L~~aI~~-----------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~ 77 (725)
T PRK07133 9 YRKYRPKTFDDIVGQDHIVQTLKNIIKS-----------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQ 77 (725)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchh
Confidence 4556788999999999999988887753 245677999999999999999999998876421 01222
Q ss_pred hhHHH-------Hh-----hcchHHHHHHHHHHHhc----CCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhc
Q 003476 400 EFVEL-------YV-----GMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM 463 (816)
Q Consensus 400 ~~~~~-------~v-----G~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~em 463 (816)
.+... +. ..+...+|++.+.+... ...|++|||+|.+.. ...|.||..|
T Consensus 78 ~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~---------------~A~NALLKtL 142 (725)
T PRK07133 78 ECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK---------------SAFNALLKTL 142 (725)
T ss_pred HHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH---------------HHHHHHHHHh
Confidence 22110 00 12345578888776642 346999999998852 3568899988
Q ss_pred cCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHH
Q 003476 464 DGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGAD 543 (816)
Q Consensus 464 Dg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaD 543 (816)
+. +...+++|.+|+.++.|.+++++ |+. .+.|.+++.++...+|+..+.+.++.+.++ .+..++..+.| +.++
T Consensus 143 EE--PP~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~e-Al~~LA~lS~G-slR~ 215 (725)
T PRK07133 143 EE--PPKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKN-ALKLIAKLSSG-SLRD 215 (725)
T ss_pred hc--CCCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHH
Confidence 84 44577888888889999999987 653 899999999999999998887776655433 36778888876 7788
Q ss_pred HHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003476 544 LANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (816)
Q Consensus 544 L~~LvneAa~~A~r~~~~~It~~d~~~Al 572 (816)
+.++++.++..+ ...|+.+++.+.+
T Consensus 216 AlslLekl~~y~----~~~It~e~V~ell 240 (725)
T PRK07133 216 ALSIAEQVSIFG----NNKITLKNVEELF 240 (725)
T ss_pred HHHHHHHHHHhc----cCCCCHHHHHHHH
Confidence 888888765443 2337877776654
No 109
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=1e-13 Score=159.93 Aligned_cols=212 Identities=21% Similarity=0.279 Sum_probs=148.8
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC-------cEEEe
Q 003476 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISC 396 (816)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgv-------pfi~i 396 (816)
...++.+|+|++|++.+++.|+..+.. .+.++.+|||||||+|||++|+.+|..+++ |+-.+
T Consensus 8 ~kyRP~~f~diiGq~~i~~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c 76 (486)
T PRK14953 8 RKYRPKFFKEVIGQEIVVRILKNAVKL-----------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC 76 (486)
T ss_pred HhhCCCcHHHccChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc
Confidence 445678999999999999988877643 245567899999999999999999998864 22111
Q ss_pred -echhhHH-----HH-----hhcchHHHHHHHHHHHh----cCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHh
Q 003476 397 -SASEFVE-----LY-----VGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (816)
Q Consensus 397 -s~s~~~~-----~~-----vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~ 461 (816)
+|..+.. .+ ...+...+|.+.+.+.. ....|++|||+|.+.. ...|.|+.
T Consensus 77 ~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~---------------~a~naLLk 141 (486)
T PRK14953 77 ENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK---------------EAFNALLK 141 (486)
T ss_pred HHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH---------------HHHHHHHH
Confidence 1111111 00 11233446666655543 2346999999998742 24577888
Q ss_pred hccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCH
Q 003476 462 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541 (816)
Q Consensus 462 emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sg 541 (816)
.++.. ...+++|.+|+.++.+.+++.+ |+. .+.+.+|+.++...+++.+++..++.++++ .+..++..+.| +.
T Consensus 142 ~LEep--p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~-al~~La~~s~G-~l 214 (486)
T PRK14953 142 TLEEP--PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEK-ALDLLAQASEG-GM 214 (486)
T ss_pred HHhcC--CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CH
Confidence 88743 3456666667778888888887 553 789999999999999999998877765444 46778888776 67
Q ss_pred HHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003476 542 ADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (816)
Q Consensus 542 aDL~~LvneAa~~A~r~~~~~It~~d~~~Al 572 (816)
+++.++++.+...+ ...|+.+++..++
T Consensus 215 r~al~~Ldkl~~~~----~~~It~~~V~~~l 241 (486)
T PRK14953 215 RDAASLLDQASTYG----EGKVTIKVVEEFL 241 (486)
T ss_pred HHHHHHHHHHHHhc----CCCcCHHHHHHHh
Confidence 88888888776442 3467887777755
No 110
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.1e-13 Score=160.28 Aligned_cols=212 Identities=21% Similarity=0.260 Sum_probs=150.8
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC-------cEEE
Q 003476 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFIS 395 (816)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgv-------pfi~ 395 (816)
.++.++.+|+||+|++.+++.|+..++. .+.|+.+|||||+|+|||++|+++|+.+.+ |+..
T Consensus 5 ~~KyRP~~fdeiiGqe~v~~~L~~~I~~-----------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~ 73 (535)
T PRK08451 5 ALKYRPKHFDELIGQESVSKTLSLALDN-----------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDT 73 (535)
T ss_pred HHHHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 3456788999999999999998887642 346677899999999999999999998743 1111
Q ss_pred e-echhhHHH-----Hh-----hcchHHHHHHHHHHHhc----CCEEEEEcCccchhhccCCccccccchHHHHHHHHHH
Q 003476 396 C-SASEFVEL-----YV-----GMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (816)
Q Consensus 396 i-s~s~~~~~-----~v-----G~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL 460 (816)
+ +|..+.+. +. ..+...+|++.+.+... ...|++|||+|.+.. ...|.||
T Consensus 74 C~~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~---------------~A~NALL 138 (535)
T PRK08451 74 CIQCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK---------------EAFNALL 138 (535)
T ss_pred cHHHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH---------------HHHHHHH
Confidence 1 11111000 00 11235677776654321 124999999998852 3568889
Q ss_pred hhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCC
Q 003476 461 TEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 540 (816)
Q Consensus 461 ~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~S 540 (816)
..|+.. ...+.+|.+|+.+..|.+++++ |. .++.|.+++.++..+.++..+.+.++.+.++ .+..++..+.| +
T Consensus 139 K~LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~-Al~~Ia~~s~G-d 211 (535)
T PRK08451 139 KTLEEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPE-ALEILARSGNG-S 211 (535)
T ss_pred HHHhhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-c
Confidence 988854 3456677777888999999988 63 5899999999999999999898877766544 57788888876 8
Q ss_pred HHHHHHHHHHHHHHHHHhCCccccHHHHHHH
Q 003476 541 GADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (816)
Q Consensus 541 gaDL~~LvneAa~~A~r~~~~~It~~d~~~A 571 (816)
.+++.+++..+...+ ...|+.+++.+.
T Consensus 212 lR~alnlLdqai~~~----~~~It~~~V~~~ 238 (535)
T PRK08451 212 LRDTLTLLDQAIIYC----KNAITESKVADM 238 (535)
T ss_pred HHHHHHHHHHHHHhc----CCCCCHHHHHHH
Confidence 889989888877655 234666665544
No 111
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.1e-13 Score=163.00 Aligned_cols=213 Identities=18% Similarity=0.211 Sum_probs=155.7
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEe------
Q 003476 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC------ 396 (816)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~i------ 396 (816)
..+.++.+|+||+|++.+++.|...+.. .+.|..+||+||+|+|||++|+++|+.+++..-..
T Consensus 15 a~KyRP~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~ 83 (598)
T PRK09111 15 ARKYRPQTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI 83 (598)
T ss_pred HhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc
Confidence 4566788999999999999998887652 35677899999999999999999999987642111
Q ss_pred -------echhhHH--------HH--hhcchHHHHHHHHHHHhc----CCEEEEEcCccchhhccCCccccccchHHHHH
Q 003476 397 -------SASEFVE--------LY--VGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (816)
Q Consensus 397 -------s~s~~~~--------~~--vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 455 (816)
+|..+.+ .. ...+...+|++++.+... ...|++|||+|.+.. ..
T Consensus 84 ~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~---------------~a 148 (598)
T PRK09111 84 DLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST---------------AA 148 (598)
T ss_pred ccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH---------------HH
Confidence 1111111 00 012345688888777532 246999999998842 34
Q ss_pred HHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhh
Q 003476 456 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 535 (816)
Q Consensus 456 Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~ 535 (816)
.|.||..|+. +...+++|.+|+.++.+.+.+++ |+ ..+.|..|+.++....++..+.+.++.+.++ .++.|+..
T Consensus 149 ~naLLKtLEe--Pp~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~e-Al~lIa~~ 222 (598)
T PRK09111 149 FNALLKTLEE--PPPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDE-ALALIARA 222 (598)
T ss_pred HHHHHHHHHh--CCCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 6888888874 33457777777888888888877 54 4789999999999999999998877766544 46777888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003476 536 TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (816)
Q Consensus 536 t~G~SgaDL~~LvneAa~~A~r~~~~~It~~d~~~Al 572 (816)
+.| +.+++.++++.+.... ...|+.+++...+
T Consensus 223 a~G-dlr~al~~Ldkli~~g----~g~It~e~V~~ll 254 (598)
T PRK09111 223 AEG-SVRDGLSLLDQAIAHG----AGEVTAEAVRDML 254 (598)
T ss_pred cCC-CHHHHHHHHHHHHhhc----CCCcCHHHHHHHh
Confidence 876 7888988888776442 3458888877665
No 112
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.55 E-value=8.3e-14 Score=157.51 Aligned_cols=182 Identities=29% Similarity=0.356 Sum_probs=117.4
Q ss_pred cccc-ccCChHHHHHHHHHHHH-hcChhHHhh---hCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH-
Q 003476 330 TFAD-VAGVDEAKEELEEIVEF-LRSPDKYIR---LGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE- 403 (816)
Q Consensus 330 tf~D-V~G~ee~K~~L~eiV~~-Lk~p~~~~~---lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~- 403 (816)
.+++ |+|++++|+.|...+.. ++.-..... -......++||+||||||||++|+++|..+++||+.++++.+.+
T Consensus 68 ~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~ 147 (412)
T PRK05342 68 HLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEA 147 (412)
T ss_pred HHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccC
Confidence 3443 89999999999766532 111100000 00123467999999999999999999999999999999988764
Q ss_pred HHhhcchHH-HHHHHHHH----HhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCC-----------
Q 003476 404 LYVGMGASR-VRDLFARA----KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD----------- 467 (816)
Q Consensus 404 ~~vG~~~~~-vr~lF~~A----~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~----------- 467 (816)
.|+|..... +..++..+ ....++||||||||.+...+.+. ....+-..+.+.+.||..|++-.
T Consensus 148 gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~-~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~ 226 (412)
T PRK05342 148 GYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENP-SITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 226 (412)
T ss_pred CcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCC-CcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCc
Confidence 577765443 34444332 23467899999999998763221 00111111345567777776421
Q ss_pred CCCcEEEEEEcCCCC----------------------------------------------------CCCcccCCCCccc
Q 003476 468 SNSAVIVLGATNRSD----------------------------------------------------VLDPALRRPGRFD 495 (816)
Q Consensus 468 ~~~~ViVIaATN~pd----------------------------------------------------~LDpALlRpGRFd 495 (816)
+....++|.|+|-.. -+.|+|+ ||+|
T Consensus 227 ~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld 304 (412)
T PRK05342 227 PQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLP 304 (412)
T ss_pred CCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCC
Confidence 112345666655410 0234444 5999
Q ss_pred ceEEecCCCHHHHHHHHHH
Q 003476 496 RVVMVETPDKIGREAILKV 514 (816)
Q Consensus 496 r~I~v~~Pd~~eR~~ILk~ 514 (816)
..+.+.+.+.++..+|+..
T Consensus 305 ~iv~f~~L~~~~L~~Il~~ 323 (412)
T PRK05342 305 VVATLEELDEEALVRILTE 323 (412)
T ss_pred eeeecCCCCHHHHHHHHHH
Confidence 9999999999999999873
No 113
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.55 E-value=3.1e-14 Score=151.68 Aligned_cols=195 Identities=23% Similarity=0.237 Sum_probs=138.6
Q ss_pred cccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc------EEE
Q 003476 322 VSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------FIS 395 (816)
Q Consensus 322 ~~~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvp------fi~ 395 (816)
..+++++-+|+|++|++.+++.|...+.. + .-.++|||||||||||+.|+++|.+++.| +..
T Consensus 26 wteKYrPkt~de~~gQe~vV~~L~~a~~~-~-----------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ 93 (346)
T KOG0989|consen 26 WTEKYRPKTFDELAGQEHVVQVLKNALLR-R-----------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLE 93 (346)
T ss_pred hHHHhCCCcHHhhcchHHHHHHHHHHHhh-c-----------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhh
Confidence 45778899999999999999999887654 2 23359999999999999999999998762 222
Q ss_pred eechhhHHHHhhcchHHHHHHHHHHHh------cCC----EEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccC
Q 003476 396 CSASEFVELYVGMGASRVRDLFARAKK------EAP----SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG 465 (816)
Q Consensus 396 is~s~~~~~~vG~~~~~vr~lF~~A~~------~aP----~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg 465 (816)
.+.|+....-+ ...++. -|.+... ..| .||+|||.|.+... +-+.|..-|+.
T Consensus 94 lnaSderGisv--vr~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd---------------aq~aLrr~mE~ 155 (346)
T KOG0989|consen 94 LNASDERGISV--VREKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD---------------AQAALRRTMED 155 (346)
T ss_pred hcccccccccc--hhhhhc-CHHHHhhccccccCCCCCcceEEEEechhhhhHH---------------HHHHHHHHHhc
Confidence 33443322111 111111 1222221 112 59999999999743 34678888886
Q ss_pred CCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHH
Q 003476 466 FDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLA 545 (816)
Q Consensus 466 ~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~ 545 (816)
+. ..+.+|..||..+.|...+.+ |. ..+.|+....+.....|+..+.+.++++++++ ++.|+..+.| +-++..
T Consensus 156 ~s--~~trFiLIcnylsrii~pi~S--RC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~a-l~~I~~~S~G-dLR~Ai 228 (346)
T KOG0989|consen 156 FS--RTTRFILICNYLSRIIRPLVS--RC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDA-LKLIAKISDG-DLRRAI 228 (346)
T ss_pred cc--cceEEEEEcCChhhCChHHHh--hH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHcCC-cHHHHH
Confidence 54 356788889999999988887 64 37788888888888999999999988877663 7888888876 555555
Q ss_pred HHHHHHHH
Q 003476 546 NLVNEAAL 553 (816)
Q Consensus 546 ~LvneAa~ 553 (816)
..++.++.
T Consensus 229 t~Lqsls~ 236 (346)
T KOG0989|consen 229 TTLQSLSL 236 (346)
T ss_pred HHHHHhhc
Confidence 55555544
No 114
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.54 E-value=2.1e-13 Score=161.32 Aligned_cols=219 Identities=17% Similarity=0.172 Sum_probs=138.6
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-------C---CcEEEeechhh
Q 003476 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------E---VPFISCSASEF 401 (816)
Q Consensus 332 ~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el-------g---vpfi~is~s~~ 401 (816)
+.|.|.++..++|..++...-. +..+...++|+|+||||||++++.+..++ + +.+++++|..+
T Consensus 755 D~LPhREeEIeeLasfL~paIk-------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~L 827 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK-------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNV 827 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh-------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCcc
Confidence 4567777766665555443111 22233335699999999999999998765 2 56788998543
Q ss_pred HHH-------H--h-h-------cchHHHHHHHHHHH--hcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhh
Q 003476 402 VEL-------Y--V-G-------MGASRVRDLFARAK--KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (816)
Q Consensus 402 ~~~-------~--v-G-------~~~~~vr~lF~~A~--~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e 462 (816)
... + + + .....+..+|.... ....+||+|||||.|.... ..+|..|+..
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~------------QDVLYnLFR~ 895 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT------------QKVLFTLFDW 895 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH------------HHHHHHHHHH
Confidence 221 1 0 1 11234556666542 2335799999999997431 2445555554
Q ss_pred ccCCCCCCcEEEEEEcCC---CCCCCcccCCCCccc-ceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCC
Q 003476 463 MDGFDSNSAVIVLGATNR---SDVLDPALRRPGRFD-RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG 538 (816)
Q Consensus 463 mDg~~~~~~ViVIaATN~---pd~LDpALlRpGRFd-r~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G 538 (816)
.. .....++|||++|. ++.|+|.+.+ ||. ..|.|++++.+++.+||+..+......+.++ .++.+|+....
T Consensus 896 ~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDd-AIELIArkVAq 970 (1164)
T PTZ00112 896 PT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHT-AIQLCARKVAN 970 (1164)
T ss_pred hh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHH-HHHHHHHhhhh
Confidence 33 23467999999986 5677888877 543 2578899999999999999987532223333 36666664433
Q ss_pred C--CHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHHc
Q 003476 539 F--TGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIA 577 (816)
Q Consensus 539 ~--SgaDL~~LvneAa~~A~r~~~~~It~~d~~~Al~r~i~ 577 (816)
. ..+..-.+|+.|+.. .+...|+.+|+.+|+++...
T Consensus 971 ~SGDARKALDILRrAgEi---kegskVT~eHVrkAleeiE~ 1008 (1164)
T PTZ00112 971 VSGDIRKALQICRKAFEN---KRGQKIVPRDITEATNQLFD 1008 (1164)
T ss_pred cCCHHHHHHHHHHHHHhh---cCCCccCHHHHHHHHHHHHh
Confidence 2 233344555555543 34558999999999976643
No 115
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=1.1e-13 Score=162.19 Aligned_cols=212 Identities=18% Similarity=0.198 Sum_probs=152.0
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-------EEEe
Q 003476 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC 396 (816)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvp-------fi~i 396 (816)
.+.++.+|+||+|++.+++.|+..+.. .+.++.+|||||||+|||++|+++|+.++++ +-.|
T Consensus 8 ~kyRP~~f~diiGqe~iv~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C 76 (563)
T PRK06647 8 TKRRPRDFNSLEGQDFVVETLKHSIES-----------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC 76 (563)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc
Confidence 445778999999999999988887652 2456779999999999999999999998652 2221
Q ss_pred -echhhHHH-------Hhh---cchHHHHHHHHHHHh----cCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHh
Q 003476 397 -SASEFVEL-------YVG---MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (816)
Q Consensus 397 -s~s~~~~~-------~vG---~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~ 461 (816)
+|-.+... +-| .+...++++.+.+.. ....|++|||+|.+.. ...|.||.
T Consensus 77 ~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~---------------~a~naLLK 141 (563)
T PRK06647 77 SSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN---------------SAFNALLK 141 (563)
T ss_pred hHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH---------------HHHHHHHH
Confidence 11111110 011 223456666554432 2346999999998842 35688898
Q ss_pred hccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCH
Q 003476 462 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541 (816)
Q Consensus 462 emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sg 541 (816)
.++. +...+++|.+|+.++.|.+++++ |+. .+.|.+++.++..++++..+...++++.++ .+..|+..+.| +.
T Consensus 142 ~LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~e-Al~lLa~~s~G-dl 214 (563)
T PRK06647 142 TIEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDE-ALKWIAYKSTG-SV 214 (563)
T ss_pred hhcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CH
Confidence 8883 44577888888888889999987 654 789999999999999999988777766544 47778888776 78
Q ss_pred HHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003476 542 ADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (816)
Q Consensus 542 aDL~~LvneAa~~A~r~~~~~It~~d~~~Al 572 (816)
+++.++++.+...+ ...|+.+++..++
T Consensus 215 R~alslLdklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 215 RDAYTLFDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred HHHHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 88888888776543 2347777666654
No 116
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.54 E-value=8.4e-14 Score=159.81 Aligned_cols=198 Identities=22% Similarity=0.304 Sum_probs=156.2
Q ss_pred CCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-------EEEee
Q 003476 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISCS 397 (816)
Q Consensus 325 ~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvp-------fi~is 397 (816)
+.++.+|+||+|++.+...|...+..-+.. .+.||+||.|||||++||.+|+.++|. +..|.
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~~~ri~-----------hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~ 77 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALENGRIA-----------HAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCI 77 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHHhCcch-----------hhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhh
Confidence 456788999999999999999998765544 457999999999999999999988764 22221
Q ss_pred -c--------hhhHH--HHhhcchHHHHHHHHHHHh----cCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhh
Q 003476 398 -A--------SEFVE--LYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (816)
Q Consensus 398 -~--------s~~~~--~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e 462 (816)
| .++++ .-...+...+|++.+.+.- ....|++|||+|.+. .+.+|.||..
T Consensus 78 ~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS---------------~~afNALLKT 142 (515)
T COG2812 78 SCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS---------------KQAFNALLKT 142 (515)
T ss_pred hhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh---------------HHHHHHHhcc
Confidence 1 11111 1122355778888888753 234599999999985 3578999999
Q ss_pred ccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHH
Q 003476 463 MDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGA 542 (816)
Q Consensus 463 mDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sga 542 (816)
++ ++..+|++|.||..++.+++.+++ |. .++.+..-+.++....|+..+.++++...++ .+..+|+...| |.+
T Consensus 143 LE--EPP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~-aL~~ia~~a~G-s~R 215 (515)
T COG2812 143 LE--EPPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEED-ALSLIARAAEG-SLR 215 (515)
T ss_pred cc--cCccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHH-HHHHHHHHcCC-Chh
Confidence 98 667889999999999999999988 53 3677999999999999999999988876555 48888999988 899
Q ss_pred HHHHHHHHHHHHH
Q 003476 543 DLANLVNEAALLA 555 (816)
Q Consensus 543 DL~~LvneAa~~A 555 (816)
|..++++.|....
T Consensus 216 DalslLDq~i~~~ 228 (515)
T COG2812 216 DALSLLDQAIAFG 228 (515)
T ss_pred hHHHHHHHHHHcc
Confidence 9999999987664
No 117
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=8.8e-14 Score=156.96 Aligned_cols=217 Identities=15% Similarity=0.204 Sum_probs=149.8
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE-E-------
Q 003476 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-I------- 394 (816)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpf-i------- 394 (816)
++..++.+|+||+|++.+++.|+..+.. .+.|..+||+||||+|||++|+++|+++.+.- .
T Consensus 7 ~~k~RP~~~~eiiGq~~~~~~L~~~~~~-----------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~ 75 (397)
T PRK14955 7 ARKYRPKKFADITAQEHITRTIQNSLRM-----------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQ 75 (397)
T ss_pred HHhcCCCcHhhccChHHHHHHHHHHHHh-----------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccc
Confidence 4556788999999999999988776642 35677899999999999999999999987631 0
Q ss_pred --Eeechh---hHHH----------Hhh---cchHHHHHHHHHHHh----cCCEEEEEcCccchhhccCCccccccchHH
Q 003476 395 --SCSASE---FVEL----------YVG---MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDER 452 (816)
Q Consensus 395 --~is~s~---~~~~----------~vG---~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~ 452 (816)
.-.|.. +... +.+ .+...++++.+.+.. ....|+||||+|.+..
T Consensus 76 ~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~-------------- 141 (397)
T PRK14955 76 EVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI-------------- 141 (397)
T ss_pred cCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH--------------
Confidence 011111 1100 111 123566666655532 1235999999998852
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHH
Q 003476 453 EQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDI 532 (816)
Q Consensus 453 ~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~L 532 (816)
...+.|+..++. +....++|.+|+.+..+-+++.+ |. ..+.+..++.++..+.++..+...+..++++ .++.+
T Consensus 142 -~~~~~LLk~LEe--p~~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~-al~~l 214 (397)
T PRK14955 142 -AAFNAFLKTLEE--PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICEAEGISVDAD-ALQLI 214 (397)
T ss_pred -HHHHHHHHHHhc--CCCCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHH
Confidence 234677777773 33455666666777788888876 54 3788999999999989988887766655544 46778
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHH-hCCccccHHHHHHHH
Q 003476 533 ASMTTGFTGADLANLVNEAALLAGR-LNKVVVEKIDFIHAV 572 (816)
Q Consensus 533 A~~t~G~SgaDL~~LvneAa~~A~r-~~~~~It~~d~~~Al 572 (816)
+..+.| +.+.+.+.++.+...+.. .....|+.+++.+.+
T Consensus 215 ~~~s~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 215 GRKAQG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HHHcCC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 888865 777888888877666532 234578888877766
No 118
>PRK08727 hypothetical protein; Validated
Probab=99.53 E-value=3e-13 Score=142.13 Aligned_cols=209 Identities=20% Similarity=0.225 Sum_probs=135.5
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH
Q 003476 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (816)
Q Consensus 327 ~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~ 403 (816)
+..+|++.++.+.- .+..+..... + .....++|+||+|||||+|++|++.++ +...++++..++..
T Consensus 14 ~~~~f~~f~~~~~n--~~~~~~~~~~--------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~ 82 (233)
T PRK08727 14 SDQRFDSYIAAPDG--LLAQLQALAA--------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG 82 (233)
T ss_pred CcCChhhccCCcHH--HHHHHHHHHh--------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh
Confidence 45689988765542 1211111111 1 223459999999999999999997664 66777777665443
Q ss_pred HHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCC
Q 003476 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (816)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~ 483 (816)
. +.+.++... ...+|+|||+|.+.... .....+..+++.+. .+..-+|+.+.+.|..
T Consensus 83 ~--------~~~~~~~l~--~~dlLiIDDi~~l~~~~----------~~~~~lf~l~n~~~---~~~~~vI~ts~~~p~~ 139 (233)
T PRK08727 83 R--------LRDALEALE--GRSLVALDGLESIAGQR----------EDEVALFDFHNRAR---AAGITLLYTARQMPDG 139 (233)
T ss_pred h--------HHHHHHHHh--cCCEEEEeCcccccCCh----------HHHHHHHHHHHHHH---HcCCeEEEECCCChhh
Confidence 2 233444333 34599999999885321 12334445555542 1222244444445654
Q ss_pred C---CcccCCCCcc--cceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 003476 484 L---DPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (816)
Q Consensus 484 L---DpALlRpGRF--dr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~ 558 (816)
+ +++|.+ || ...+.++.|+.+++.+|++.++..+++.+++++ ++.|+..+.| +.+.+.++++.....+...
T Consensus 140 l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~-~~~La~~~~r-d~r~~l~~L~~l~~~~~~~ 215 (233)
T PRK08727 140 LALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAA-IDWLLTHGER-ELAGLVALLDRLDRESLAA 215 (233)
T ss_pred hhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhCCC-CHHHHHHHHHHHHHHHHHh
Confidence 4 788987 76 568899999999999999998877777766553 7788888875 6677777777665545444
Q ss_pred CCccccHHHHHHHHHH
Q 003476 559 NKVVVEKIDFIHAVER 574 (816)
Q Consensus 559 ~~~~It~~d~~~Al~r 574 (816)
+ ..||...+.+.+.+
T Consensus 216 ~-~~it~~~~~~~l~~ 230 (233)
T PRK08727 216 K-RRVTVPFLRRVLEE 230 (233)
T ss_pred C-CCCCHHHHHHHHhh
Confidence 4 46888887777643
No 119
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=1.9e-13 Score=156.65 Aligned_cols=213 Identities=21% Similarity=0.261 Sum_probs=145.9
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc--------EE
Q 003476 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP--------FI 394 (816)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvp--------fi 394 (816)
++..++.+|+||+|++.+++.|+..+.. .+.|+.+|||||||+|||++|+++|+.+.++ +.
T Consensus 8 ~~kyRP~~~~diiGq~~~v~~L~~~i~~-----------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~ 76 (451)
T PRK06305 8 SRKYRPQTFSEILGQDAVVAVLKNALRF-----------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCN 76 (451)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCc
Confidence 3456778999999999999988877643 2456779999999999999999999987543 11
Q ss_pred E-eechhhHHH-------Hhh---cchHHHHHHHHHHH----hcCCEEEEEcCccchhhccCCccccccchHHHHHHHHH
Q 003476 395 S-CSASEFVEL-------YVG---MGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQL 459 (816)
Q Consensus 395 ~-is~s~~~~~-------~vG---~~~~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~L 459 (816)
. .+|..+... +.| .+...++++.+... .....||+|||+|.+.. ...|.|
T Consensus 77 ~c~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~---------------~~~n~L 141 (451)
T PRK06305 77 QCASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK---------------EAFNSL 141 (451)
T ss_pred ccHHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH---------------HHHHHH
Confidence 0 011111100 011 12244554443332 23467999999998852 235788
Q ss_pred HhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCC
Q 003476 460 LTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGF 539 (816)
Q Consensus 460 L~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~ 539 (816)
+..|+. +...+++|++||.+..|.+++.+ |+ ..+.+..++.++....++..+.+.++.++++ .++.|+..+.|
T Consensus 142 Lk~lEe--p~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~-al~~L~~~s~g- 214 (451)
T PRK06305 142 LKTLEE--PPQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSRE-ALLPIARAAQG- 214 (451)
T ss_pred HHHhhc--CCCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-
Confidence 888885 33467777788888899999987 55 3789999999999999998887766665444 47778887765
Q ss_pred CHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003476 540 TGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (816)
Q Consensus 540 SgaDL~~LvneAa~~A~r~~~~~It~~d~~~Al 572 (816)
+.+++.++++..... .+ ..|+.+++..++
T Consensus 215 dlr~a~~~Lekl~~~---~~-~~It~~~V~~l~ 243 (451)
T PRK06305 215 SLRDAESLYDYVVGL---FP-KSLDPDSVAKAL 243 (451)
T ss_pred CHHHHHHHHHHHHHh---cc-CCcCHHHHHHHH
Confidence 566666666654433 22 348888776665
No 120
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=2.6e-13 Score=160.50 Aligned_cols=211 Identities=18% Similarity=0.192 Sum_probs=148.0
Q ss_pred cccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEE----e-
Q 003476 322 VSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS----C- 396 (816)
Q Consensus 322 ~~~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~----i- 396 (816)
+.++.++.+|+|++|++++++.|...+..- +.+.++||+||||+|||++|+++|+.+++.... -
T Consensus 6 l~~kyRP~~f~~liGq~~i~~~L~~~l~~~-----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~ 74 (620)
T PRK14948 6 LHHKYRPQRFDELVGQEAIATTLKNALISN-----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEP 74 (620)
T ss_pred HHHHhCCCcHhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCC
Confidence 345567789999999999999998877542 345679999999999999999999998763110 0
Q ss_pred --echhhHH-------------HHhhcchHHHHHHHHHHHhc----CCEEEEEcCccchhhccCCccccccchHHHHHHH
Q 003476 397 --SASEFVE-------------LYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLN 457 (816)
Q Consensus 397 --s~s~~~~-------------~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln 457 (816)
.|..+.. .....+...+|++++.+... ...|+||||+|.|.. ...|
T Consensus 75 Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~---------------~a~n 139 (620)
T PRK14948 75 CGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST---------------AAFN 139 (620)
T ss_pred CcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH---------------HHHH
Confidence 1111110 11123456788888777532 235999999998842 3568
Q ss_pred HHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCC
Q 003476 458 QLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 537 (816)
Q Consensus 458 ~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~ 537 (816)
.||..|+. +...+++|++|+.++.+.+++++ |+ ..+.|..++.++....++..+.+.++.+.++ .+..++..+.
T Consensus 140 aLLK~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~-al~~La~~s~ 213 (620)
T PRK14948 140 ALLKTLEE--PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPE-ALTLVAQRSQ 213 (620)
T ss_pred HHHHHHhc--CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHcC
Confidence 88998883 44567788888888889899887 54 4788999999888888888777766655544 3777888887
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCccccHHHHHH
Q 003476 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIH 570 (816)
Q Consensus 538 G~SgaDL~~LvneAa~~A~r~~~~~It~~d~~~ 570 (816)
| +.+++.++++...+.. ..|+.+++.+
T Consensus 214 G-~lr~A~~lLeklsL~~-----~~It~e~V~~ 240 (620)
T PRK14948 214 G-GLRDAESLLDQLSLLP-----GPITPEAVWD 240 (620)
T ss_pred C-CHHHHHHHHHHHHhcc-----CCCCHHHHHH
Confidence 6 5677777777644331 2355555443
No 121
>PRK05642 DNA replication initiation factor; Validated
Probab=99.52 E-value=4.6e-13 Score=140.86 Aligned_cols=180 Identities=16% Similarity=0.218 Sum_probs=126.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccC
Q 003476 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRD 441 (816)
Q Consensus 365 pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~ 441 (816)
..+++|+||+|||||+|++|+++++ +..+++++..++.... ..+.+..+.. .+|+|||++.+....
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~~--d~LiiDDi~~~~~~~- 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQY--ELVCLDDLDVIAGKA- 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhhC--CEEEEechhhhcCCh-
Confidence 4679999999999999999998754 6788888888876531 2233333322 489999999875321
Q ss_pred CccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCC---CCcccCCCCcc--cceEEecCCCHHHHHHHHHHHH
Q 003476 442 GRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV---LDPALRRPGRF--DRVVMVETPDKIGREAILKVHV 516 (816)
Q Consensus 442 ~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~---LDpALlRpGRF--dr~I~v~~Pd~~eR~~ILk~~l 516 (816)
..+..+..+++.+ ..+...++|+++..|.. ..|.|++ || ...+.+..|+.+++.++++..+
T Consensus 114 ---------~~~~~Lf~l~n~~---~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 114 ---------DWEEALFHLFNRL---RDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred ---------HHHHHHHHHHHHH---HhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 2223344444443 23345677777766643 3688887 77 4677889999999999999777
Q ss_pred hcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003476 517 SKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (816)
Q Consensus 517 ~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~~~~It~~d~~~Al 572 (816)
...++.+++++ ++.|+.+..+ +.+.+.++++.-...+.. .+..||..-+.+++
T Consensus 180 ~~~~~~l~~ev-~~~L~~~~~~-d~r~l~~~l~~l~~~~l~-~~~~it~~~~~~~L 232 (234)
T PRK05642 180 SRRGLHLTDEV-GHFILTRGTR-SMSALFDLLERLDQASLQ-AQRKLTIPFLKETL 232 (234)
T ss_pred HHcCCCCCHHH-HHHHHHhcCC-CHHHHHHHHHHHHHHHHH-cCCcCCHHHHHHHh
Confidence 77777776654 7778888876 889999999887654433 34568877766665
No 122
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.51 E-value=3.1e-13 Score=154.79 Aligned_cols=192 Identities=13% Similarity=0.214 Sum_probs=132.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEeechhhHHHHhhcchH---HHHHHHHHHHhcCCEEEEEcCccch
Q 003476 365 PRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASEFVELYVGMGAS---RVRDLFARAKKEAPSIIFIDEIDAV 436 (816)
Q Consensus 365 pkGVLL~GPPGTGKT~LAkALA~el-----gvpfi~is~s~~~~~~vG~~~~---~vr~lF~~A~~~aP~ILfIDEIDaL 436 (816)
.++++||||+|+|||+|++|+++++ +..++++++.+|...+...-.. .+.++.+.. ..+.+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccc
Confidence 3569999999999999999999854 5788999999988766543221 222222222 24569999999988
Q ss_pred hhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCC---CCCcccCCCCccc--ceEEecCCCHHHHHHH
Q 003476 437 AKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD---VLDPALRRPGRFD--RVVMVETPDKIGREAI 511 (816)
Q Consensus 437 ~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd---~LDpALlRpGRFd--r~I~v~~Pd~~eR~~I 511 (816)
..+ +.....+..+++.+. ...+.+||++...|. .+++.|.+ ||. ..+.+..|+.++|.+|
T Consensus 219 ~~k----------~~~~e~lf~l~N~~~---~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 219 SYK----------EKTNEIFFTIFNNFI---ENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred cCC----------HHHHHHHHHHHHHHH---HcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHH
Confidence 532 112233333444332 122334444444443 45778877 774 6778899999999999
Q ss_pred HHHHHhcCCC--CCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC-CccccHHHHHHHHHHH
Q 003476 512 LKVHVSKKEL--PLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN-KVVVEKIDFIHAVERS 575 (816)
Q Consensus 512 Lk~~l~~~~l--~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~-~~~It~~d~~~Al~r~ 575 (816)
|+.++...++ .++++ .++.|+....| +.+.|.++++.....+.... ...|+.+.+.+++...
T Consensus 284 L~~~~~~~gl~~~l~~e-vl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 284 IKKEIKNQNIKQEVTEE-AINFISNYYSD-DVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHHHhcCCCCCCCHH-HHHHHHHccCC-CHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 9999987654 34444 36778888877 89999999999886665542 3679999988888654
No 123
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=4.3e-13 Score=158.22 Aligned_cols=216 Identities=15% Similarity=0.214 Sum_probs=149.3
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEE--------
Q 003476 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS-------- 395 (816)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~-------- 395 (816)
...++.+|+||+|++.+++.|+..+.. .+.+..+||+||||||||++|+++|+.+.+.--.
T Consensus 8 ~kyRP~~f~eivGQe~i~~~L~~~i~~-----------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~ 76 (620)
T PRK14954 8 RKYRPSKFADITAQEHITHTIQNSLRM-----------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQE 76 (620)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccc
Confidence 456788999999999999988876542 3567789999999999999999999998773100
Q ss_pred --eech---hhHHH----------Hhh---cchHHHHHHHHHHHh----cCCEEEEEcCccchhhccCCccccccchHHH
Q 003476 396 --CSAS---EFVEL----------YVG---MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDERE 453 (816)
Q Consensus 396 --is~s---~~~~~----------~vG---~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~ 453 (816)
-.|. .+... +.+ .+...++++.+.+.. ....|++|||+|.+..
T Consensus 77 ~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~--------------- 141 (620)
T PRK14954 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST--------------- 141 (620)
T ss_pred cCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH---------------
Confidence 1111 11110 111 124567776665532 2345999999998852
Q ss_pred HHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHH
Q 003476 454 QTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIA 533 (816)
Q Consensus 454 ~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA 533 (816)
...|.||..|+... ..+++|.+|+.++.|-+++.+ |. ..+.|..++.++....++..+...++.+.++ .++.|+
T Consensus 142 ~a~naLLK~LEePp--~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~e-al~~La 215 (620)
T PRK14954 142 AAFNAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDAD-ALQLIA 215 (620)
T ss_pred HHHHHHHHHHhCCC--CCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHH
Confidence 23578888888433 345666666777888888887 43 4899999999999988888887766655544 477788
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHH-HhCCccccHHHHHHHH
Q 003476 534 SMTTGFTGADLANLVNEAALLAG-RLNKVVVEKIDFIHAV 572 (816)
Q Consensus 534 ~~t~G~SgaDL~~LvneAa~~A~-r~~~~~It~~d~~~Al 572 (816)
..+.| +.+++.+.++.....+. ......|+.+++.+.+
T Consensus 216 ~~s~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 216 RKAQG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred HHhCC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 88865 67777777776665552 1234568887776665
No 124
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.51 E-value=7.6e-13 Score=143.35 Aligned_cols=206 Identities=22% Similarity=0.251 Sum_probs=137.9
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC-----CcEEEee
Q 003476 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-----VPFISCS 397 (816)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elg-----vpfi~is 397 (816)
.+..++.+|+|++|.+++++.|...+.. ... .++||+||||||||++++++++++. .+++.++
T Consensus 8 ~~kyrP~~~~~~~g~~~~~~~l~~~i~~-----------~~~-~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~ 75 (319)
T PRK00440 8 VEKYRPRTLDEIVGQEEIVERLKSYVKE-----------KNM-PHLLFAGPPGTGKTTAALALARELYGEDWRENFLELN 75 (319)
T ss_pred chhhCCCcHHHhcCcHHHHHHHHHHHhC-----------CCC-CeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEec
Confidence 3456678999999999999988876632 112 2589999999999999999999873 3455555
Q ss_pred chhhHHHHhhcchHHHHHHHHHHHh------cCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCc
Q 003476 398 ASEFVELYVGMGASRVRDLFARAKK------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSA 471 (816)
Q Consensus 398 ~s~~~~~~vG~~~~~vr~lF~~A~~------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ 471 (816)
+++-. +...+++.+..... ..+.+|+|||+|.+... ..+.|+..++.... .
T Consensus 76 ~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~---------------~~~~L~~~le~~~~--~ 132 (319)
T PRK00440 76 ASDER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD---------------AQQALRRTMEMYSQ--N 132 (319)
T ss_pred ccccc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH---------------HHHHHHHHHhcCCC--C
Confidence 44321 11122222222211 23569999999988421 12345555554433 3
Q ss_pred EEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHH
Q 003476 472 VIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEA 551 (816)
Q Consensus 472 ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneA 551 (816)
..+|.++|.+..+.+++.+ |+. .+.+++++.++...+++.++.+.++.+.++ .++.++..+.| +.+.+.+.+..+
T Consensus 133 ~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~-al~~l~~~~~g-d~r~~~~~l~~~ 207 (319)
T PRK00440 133 TRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDD-ALEAIYYVSEG-DMRKAINALQAA 207 (319)
T ss_pred CeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHH
Confidence 4555567777777777776 654 689999999999999999998877766555 47788887755 555555555544
Q ss_pred HHHHHHhCCccccHHHHHHHHH
Q 003476 552 ALLAGRLNKVVVEKIDFIHAVE 573 (816)
Q Consensus 552 a~~A~r~~~~~It~~d~~~Al~ 573 (816)
+.. ...||.+++..++.
T Consensus 208 ~~~-----~~~it~~~v~~~~~ 224 (319)
T PRK00440 208 AAT-----GKEVTEEAVYKITG 224 (319)
T ss_pred HHc-----CCCCCHHHHHHHhC
Confidence 332 35789888877763
No 125
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.50 E-value=2.7e-13 Score=141.31 Aligned_cols=200 Identities=24% Similarity=0.361 Sum_probs=126.2
Q ss_pred Ccccccccc-CC--hHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEeec
Q 003476 327 DTITFADVA-GV--DEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSA 398 (816)
Q Consensus 327 ~~vtf~DV~-G~--ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el-----gvpfi~is~ 398 (816)
++.||++.+ |. ..+...++.+.+. +. .....++||||+|+|||+|.+|+++++ +..++++++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~---~~-------~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~ 72 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAEN---PG-------ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA 72 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHS---TT-------TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhc---CC-------CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH
Confidence 567899986 42 2333333333322 21 123458999999999999999999874 678999999
Q ss_pred hhhHHHHhhcchH-HHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEE
Q 003476 399 SEFVELYVGMGAS-RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 477 (816)
Q Consensus 399 s~~~~~~vG~~~~-~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaA 477 (816)
.+|...+...... .+.+ |..... ...+|+||++|.+..+ ......+..+++.+- .+.+.+||++
T Consensus 73 ~~f~~~~~~~~~~~~~~~-~~~~~~-~~DlL~iDDi~~l~~~----------~~~q~~lf~l~n~~~---~~~k~li~ts 137 (219)
T PF00308_consen 73 EEFIREFADALRDGEIEE-FKDRLR-SADLLIIDDIQFLAGK----------QRTQEELFHLFNRLI---ESGKQLILTS 137 (219)
T ss_dssp HHHHHHHHHHHHTTSHHH-HHHHHC-TSSEEEEETGGGGTTH----------HHHHHHHHHHHHHHH---HTTSEEEEEE
T ss_pred HHHHHHHHHHHHcccchh-hhhhhh-cCCEEEEecchhhcCc----------hHHHHHHHHHHHHHH---hhCCeEEEEe
Confidence 9998766543222 2222 322222 3459999999998632 223344444444432 2345677777
Q ss_pred cCCCCCC---CcccCCCCccc--ceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHH
Q 003476 478 TNRSDVL---DPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAA 552 (816)
Q Consensus 478 TN~pd~L---DpALlRpGRFd--r~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa 552 (816)
...|..+ ++.|.+ ||. ..+.+..|+.+.|.+|++..+..+++.+++++ .+.|+....+ +.++|..+++.-.
T Consensus 138 ~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v-~~~l~~~~~~-~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 138 DRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEV-IEYLARRFRR-DVRELEGALNRLD 213 (219)
T ss_dssp SS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHH-HHHHHHHTTS-SHHHHHHHHHHHH
T ss_pred CCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHH-HHHHHHhhcC-CHHHHHHHHHHHH
Confidence 6667654 566666 664 58899999999999999999999998887775 6778887765 8899999988766
Q ss_pred HHH
Q 003476 553 LLA 555 (816)
Q Consensus 553 ~~A 555 (816)
..+
T Consensus 214 ~~~ 216 (219)
T PF00308_consen 214 AYA 216 (219)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 126
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=4.6e-13 Score=158.05 Aligned_cols=213 Identities=18% Similarity=0.227 Sum_probs=147.2
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEE-----e-
Q 003476 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS-----C- 396 (816)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~-----i- 396 (816)
+++.++.+|+||+|++.+++.|+..+.. .+.+..+||+||||+|||++|+++|+.+++..-. |
T Consensus 7 ~~kyRP~~~~eiiGq~~~~~~L~~~i~~-----------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~ 75 (585)
T PRK14950 7 YRKWRSQTFAELVGQEHVVQTLRNAIAE-----------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCG 75 (585)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 4566788999999999999998877653 2345678999999999999999999988653210 0
Q ss_pred echhhHHHH-------------hhcchHHHHHHHHHHHh----cCCEEEEEcCccchhhccCCccccccchHHHHHHHHH
Q 003476 397 SASEFVELY-------------VGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQL 459 (816)
Q Consensus 397 s~s~~~~~~-------------vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~L 459 (816)
.|..+.... ...+...++++.+.+.. ....||||||+|.+.. ..+|.|
T Consensus 76 ~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~---------------~a~naL 140 (585)
T PRK14950 76 TCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST---------------AAFNAL 140 (585)
T ss_pred cCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH---------------HHHHHH
Confidence 011111100 01223445665554432 2245999999998752 346788
Q ss_pred HhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCC
Q 003476 460 LTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGF 539 (816)
Q Consensus 460 L~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~ 539 (816)
|..|+... ..+++|.+|+..+.+.+.+.+ |+ ..+.|..++..+...+++..+.+.++.++++ .+..|+..+.|
T Consensus 141 Lk~LEepp--~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~e-al~~La~~s~G- 213 (585)
T PRK14950 141 LKTLEEPP--PHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPG-ALEAIARAATG- 213 (585)
T ss_pred HHHHhcCC--CCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-
Confidence 88887433 456666677777778888876 54 3788999999999999998888777666544 36778888766
Q ss_pred CHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003476 540 TGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (816)
Q Consensus 540 SgaDL~~LvneAa~~A~r~~~~~It~~d~~~Al 572 (816)
+.+++.+.++..+.. ....|+.+++...+
T Consensus 214 dlr~al~~LekL~~y----~~~~It~e~V~~ll 242 (585)
T PRK14950 214 SMRDAENLLQQLATT----YGGEISLSQVQSLL 242 (585)
T ss_pred CHHHHHHHHHHHHHh----cCCCCCHHHHHHHh
Confidence 788888888765443 23458887776544
No 127
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.48 E-value=1e-12 Score=142.30 Aligned_cols=99 Identities=20% Similarity=0.236 Sum_probs=81.0
Q ss_pred EEEEEEcCC------------CCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCC
Q 003476 472 VIVLGATNR------------SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGF 539 (816)
Q Consensus 472 ViVIaATN~------------pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~ 539 (816)
-+||.|||+ |+-++..|+. |+ ..|...+++.++..+|++..+...++.++++ .++.|+.....-
T Consensus 321 PIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~-Ale~L~~ig~et 396 (450)
T COG1224 321 PIIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-LIISTRPYSREEIREIIRIRAKEEDIELSDD-ALEYLTDIGEET 396 (450)
T ss_pred cEEEEEcCCceeeecccCCcCCCCCCHhhhh--he-eEEecCCCCHHHHHHHHHHhhhhhccccCHH-HHHHHHhhchhh
Confidence 377788887 5667777775 43 3667778899999999999999888877666 478888877777
Q ss_pred CHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHH
Q 003476 540 TGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (816)
Q Consensus 540 SgaDL~~LvneAa~~A~r~~~~~It~~d~~~Al~r 574 (816)
|-+-.-+|+.-|...|.++++..|..+|+++|.+-
T Consensus 397 SLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~l 431 (450)
T COG1224 397 SLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKEL 431 (450)
T ss_pred hHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHH
Confidence 88888889999999999999999999999998754
No 128
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.48 E-value=1.2e-12 Score=137.46 Aligned_cols=195 Identities=23% Similarity=0.360 Sum_probs=136.5
Q ss_pred CCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhh
Q 003476 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (816)
Q Consensus 325 ~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~ 401 (816)
....+.+++++|++..|+.|.+-...+.. ..+..++||+|++|||||+++||+..+. |..++.+...++
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L 91 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQ--------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL 91 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHc--------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence 34579999999999999998776544332 4578899999999999999999999865 788899887766
Q ss_pred HHHHhhcchHHHHHHHHHHH-hcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCC--CCCCcEEEEEEc
Q 003476 402 VELYVGMGASRVRDLFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF--DSNSAVIVLGAT 478 (816)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~--~~~~~ViVIaAT 478 (816)
.. +.++++..+ ...+-|||+|++- + . .+ +.....|...|||- ....+|++.||+
T Consensus 92 ~~---------l~~l~~~l~~~~~kFIlf~DDLs-F--e--------~~---d~~yk~LKs~LeGgle~~P~NvliyATS 148 (249)
T PF05673_consen 92 GD---------LPELLDLLRDRPYKFILFCDDLS-F--E--------EG---DTEYKALKSVLEGGLEARPDNVLIYATS 148 (249)
T ss_pred cc---------HHHHHHHHhcCCCCEEEEecCCC-C--C--------CC---cHHHHHHHHHhcCccccCCCcEEEEEec
Confidence 43 445565555 3345799999863 1 1 11 12235556666654 235789999999
Q ss_pred CCCCCCCccc---------------------CCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccc-cCHH--HHHh
Q 003476 479 NRSDVLDPAL---------------------RRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKD-IDLG--DIAS 534 (816)
Q Consensus 479 N~pd~LDpAL---------------------lRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~d-vdl~--~LA~ 534 (816)
|+-+.+.... --.-||...|.|..|+.++-.+|++.++.+.+++++.+ ...+ ..|.
T Consensus 149 NRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~ 228 (249)
T PF05673_consen 149 NRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWAL 228 (249)
T ss_pred chhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9854332211 11248999999999999999999999998887766532 1111 2244
Q ss_pred hCCCCCHHHHHHHHHH
Q 003476 535 MTTGFTGADLANLVNE 550 (816)
Q Consensus 535 ~t~G~SgaDL~~Lvne 550 (816)
...|.||+-..+.++.
T Consensus 229 ~rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 229 RRGGRSGRTARQFIDD 244 (249)
T ss_pred HcCCCCHHHHHHHHHH
Confidence 5556777766666553
No 129
>PRK06620 hypothetical protein; Validated
Probab=99.48 E-value=4.9e-13 Score=138.96 Aligned_cols=196 Identities=15% Similarity=0.210 Sum_probs=129.9
Q ss_pred CCccccccccCChH---HHHHHHHHHHHhcChhHHhhhCCCC-CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhh
Q 003476 326 GDTITFADVAGVDE---AKEELEEIVEFLRSPDKYIRLGARP-PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (816)
Q Consensus 326 ~~~vtf~DV~G~ee---~K~~L~eiV~~Lk~p~~~~~lg~~~-pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~ 401 (816)
.+..+|++.+-.+. +...++++.+ .+ +..+ .+.++||||||||||+|++++++..+..++. ....
T Consensus 10 ~~~~tfd~Fvvg~~N~~a~~~~~~~~~---~~------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~ 78 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQAYNIIKNWQC---GF------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF 78 (214)
T ss_pred CCCCCchhhEecccHHHHHHHHHHHHH---cc------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh
Confidence 35668888776553 3333333322 11 2222 1679999999999999999999988864433 1111
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCC
Q 003476 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (816)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~p 481 (816)
. .+.+ . ...+|+|||||.+. ...+..+++.+. .++..++|+++..|
T Consensus 79 ~-----------~~~~----~-~~d~lliDdi~~~~---------------~~~lf~l~N~~~---e~g~~ilits~~~p 124 (214)
T PRK06620 79 N-----------EEIL----E-KYNAFIIEDIENWQ---------------EPALLHIFNIIN---EKQKYLLLTSSDKS 124 (214)
T ss_pred c-----------hhHH----h-cCCEEEEeccccch---------------HHHHHHHHHHHH---hcCCEEEEEcCCCc
Confidence 0 1111 1 23589999999431 113334444432 23457788887666
Q ss_pred CC--CCcccCCCCccc--ceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 003476 482 DV--LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGR 557 (816)
Q Consensus 482 d~--LDpALlRpGRFd--r~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r 557 (816)
.. + |+|++ |+. ..+.+..|+.+++.++++.++...++.+++++ ++.|+....+ +.+.+.++++.....+..
T Consensus 125 ~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev-~~~L~~~~~~-d~r~l~~~l~~l~~~~~~ 199 (214)
T PRK06620 125 RNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQI-IDFLLVNLPR-EYSKIIEILENINYFALI 199 (214)
T ss_pred cccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHccC-CHHHHHHHHHHHHHHHHH
Confidence 54 5 77877 764 47899999999999999999987777777664 7888888876 889999999886544443
Q ss_pred hCCccccHHHHHHHH
Q 003476 558 LNKVVVEKIDFIHAV 572 (816)
Q Consensus 558 ~~~~~It~~d~~~Al 572 (816)
.+..||...+.+++
T Consensus 200 -~~~~it~~~~~~~l 213 (214)
T PRK06620 200 -SKRKITISLVKEVL 213 (214)
T ss_pred -cCCCCCHHHHHHHh
Confidence 33568887777664
No 130
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.46 E-value=1.3e-12 Score=139.56 Aligned_cols=184 Identities=25% Similarity=0.261 Sum_probs=115.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechh------hHHHHhhcchHHHHH--------------------HHHH
Q 003476 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE------FVELYVGMGASRVRD--------------------LFAR 419 (816)
Q Consensus 366 kGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~------~~~~~vG~~~~~vr~--------------------lF~~ 419 (816)
..+||+||||||||++|+++|..+|.||+.++|.. ++..+.+.....+.+ .+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 46999999999999999999999999999997753 332222211111111 1122
Q ss_pred HHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCC--------------CCCCcEEEEEEcCCC----
Q 003476 420 AKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF--------------DSNSAVIVLGATNRS---- 481 (816)
Q Consensus 420 A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~--------------~~~~~ViVIaATN~p---- 481 (816)
|.. .+.+|+|||||.+... +.+.|+..|+.- ..+.++.||+|+|..
T Consensus 102 A~~-~g~~lllDEi~r~~~~---------------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g 165 (262)
T TIGR02640 102 AVR-EGFTLVYDEFTRSKPE---------------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAG 165 (262)
T ss_pred HHH-cCCEEEEcchhhCCHH---------------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccc
Confidence 222 2459999999986432 223333333221 022467899999976
Q ss_pred -CCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHH---H---h---hCCCCCHHHHHHHHHHH
Q 003476 482 -DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDI---A---S---MTTGFTGADLANLVNEA 551 (816)
Q Consensus 482 -d~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~L---A---~---~t~G~SgaDL~~LvneA 551 (816)
..++++|++ || ..+.++.|+.++..+|++.+.. ++++ ..+.+ + + .....+ ++.++.-|
T Consensus 166 ~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~-----~~~~-~~~~iv~~~~~~R~~~~~~~~~---~r~~i~~~ 233 (262)
T TIGR02640 166 VHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD-----VAED-SAATIVRLVREFRASGDEITSG---LRASLMIA 233 (262)
T ss_pred eecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC-----CCHH-HHHHHHHHHHHHHhhCCccCCc---HHHHHHHH
Confidence 356889998 88 5899999999999999998752 1222 11111 1 1 111223 44444444
Q ss_pred HHHHHHhCCccccHHHHHHHHHHHHc
Q 003476 552 ALLAGRLNKVVVEKIDFIHAVERSIA 577 (816)
Q Consensus 552 a~~A~r~~~~~It~~d~~~Al~r~i~ 577 (816)
...+....+..++.+||.+....++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (262)
T TIGR02640 234 EVATQQDIPVDVDDEDFVDLCIDILA 259 (262)
T ss_pred HHHHHcCCCCCCCcHHHHHHHHHHhc
Confidence 44444455777888888888776654
No 131
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.46 E-value=3.8e-13 Score=148.26 Aligned_cols=220 Identities=22% Similarity=0.320 Sum_probs=134.1
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-------CCcEEEe--e
Q 003476 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISC--S 397 (816)
Q Consensus 327 ~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el-------gvpfi~i--s 397 (816)
....|++|+|++++++.|.-..- ++ ...++||+||||||||++||++|+-+ ++|+-.. .
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~---~~---------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAI---DP---------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHh---cc---------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 45789999999999987764211 00 11469999999999999999999987 3332111 1
Q ss_pred c-hh---------------hHHHHhhcchHHHHH--HHHHH-------------HhcCCEEEEEcCccchhhccCCcccc
Q 003476 398 A-SE---------------FVELYVGMGASRVRD--LFARA-------------KKEAPSIIFIDEIDAVAKSRDGRFRI 446 (816)
Q Consensus 398 ~-s~---------------~~~~~vG~~~~~vr~--lF~~A-------------~~~aP~ILfIDEIDaL~~~r~~~~~~ 446 (816)
+ .+ |++...+.++.++-. .++.+ ......+||||||+.+...
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~------- 143 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDH------- 143 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHH-------
Confidence 0 00 011111111111110 00111 0011249999999987532
Q ss_pred ccchHHHHHHHHHHhhccCC-----------CCCCcEEEEEEcCCCC-CCCcccCCCCcccceEEecCCCH-HHHHHHHH
Q 003476 447 VSNDEREQTLNQLLTEMDGF-----------DSNSAVIVLGATNRSD-VLDPALRRPGRFDRVVMVETPDK-IGREAILK 513 (816)
Q Consensus 447 ~~~~e~~~~Ln~LL~emDg~-----------~~~~~ViVIaATN~pd-~LDpALlRpGRFdr~I~v~~Pd~-~eR~~ILk 513 (816)
+.+.|+..|+.- .....+++|+++|..+ .+.++++. ||...+.++.|.. ++|.+|++
T Consensus 144 --------~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~ 213 (334)
T PRK13407 144 --------IVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIR 213 (334)
T ss_pred --------HHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHH
Confidence 334455544321 1235689999999754 68899998 9999999998876 89999998
Q ss_pred HHHhcCC-----------------------------CCCcccc--CHHHHHhhCC-CCCHHHHHHHHHHHHHHHHHhCCc
Q 003476 514 VHVSKKE-----------------------------LPLAKDI--DLGDIASMTT-GFTGADLANLVNEAALLAGRLNKV 561 (816)
Q Consensus 514 ~~l~~~~-----------------------------l~l~~dv--dl~~LA~~t~-G~SgaDL~~LvneAa~~A~r~~~~ 561 (816)
....... +.+++++ .+-.++..+. .-..+++. +++.|...|..+++.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~Gr~ 292 (334)
T PRK13407 214 RRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFEGAE 292 (334)
T ss_pred HhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHcCCC
Confidence 7543210 0011110 0111222222 12345665 999999999999999
Q ss_pred cccHHHHHHHHHHHH
Q 003476 562 VVEKIDFIHAVERSI 576 (816)
Q Consensus 562 ~It~~d~~~Al~r~i 576 (816)
.|+.+|+..+..-++
T Consensus 293 ~V~~~Di~~~~~~vl 307 (334)
T PRK13407 293 AVGRSHLRSVATMAL 307 (334)
T ss_pred eeCHHHHHHHHHHhh
Confidence 999999988775544
No 132
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.45 E-value=2.4e-13 Score=152.24 Aligned_cols=175 Identities=33% Similarity=0.459 Sum_probs=125.4
Q ss_pred cccCChHHHHHHHHHHHH-hcChhHHhhh-CCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH-HHhh-c
Q 003476 333 DVAGVDEAKEELEEIVEF-LRSPDKYIRL-GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LYVG-M 408 (816)
Q Consensus 333 DV~G~ee~K~~L~eiV~~-Lk~p~~~~~l-g~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~-~~vG-~ 408 (816)
-|+|++++|+.+...+.. ++.......+ ..-.|+++||+||||||||++|+++|..+++||+.+++..+.+ .|+| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 489999999998766543 1211100011 1235799999999999999999999999999999999987775 5766 4
Q ss_pred chHHHHHHHHHHH-------------------------------------------------------------------
Q 003476 409 GASRVRDLFARAK------------------------------------------------------------------- 421 (816)
Q Consensus 409 ~~~~vr~lF~~A~------------------------------------------------------------------- 421 (816)
.+..++.+|..|.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 5566666665550
Q ss_pred ------------------------------------------------------------------------hcCCEEEE
Q 003476 422 ------------------------------------------------------------------------KEAPSIIF 429 (816)
Q Consensus 422 ------------------------------------------------------------------------~~aP~ILf 429 (816)
...-.|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01234999
Q ss_pred EcCccchhhccCCccccccchHHHHHHHHHHhhccCCC--------CCCcEEEEEEcC----CCCCCCcccCCCCcccce
Q 003476 430 IDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------SNSAVIVLGATN----RSDVLDPALRRPGRFDRV 497 (816)
Q Consensus 430 IDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~--------~~~~ViVIaATN----~pd~LDpALlRpGRFdr~ 497 (816)
|||||.|+.+.... +.+-..+.+-..||..|+|-. ...+|++||+-- .|+.|-|.|. |||...
T Consensus 253 iDEiDKIa~~~~~~---~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~ 327 (441)
T TIGR00390 253 IDEIDKIAKKGESS---GADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIR 327 (441)
T ss_pred EEchhhhcccCCCC---CCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceE
Confidence 99999999765221 222233456678888888732 246788888763 4666777887 699999
Q ss_pred EEecCCCHHHHHHHH
Q 003476 498 VMVETPDKIGREAIL 512 (816)
Q Consensus 498 I~v~~Pd~~eR~~IL 512 (816)
+.+..++.++...||
T Consensus 328 v~L~~L~~edL~rIL 342 (441)
T TIGR00390 328 VELQALTTDDFERIL 342 (441)
T ss_pred EECCCCCHHHHHHHh
Confidence 999999999998887
No 133
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.45 E-value=9.6e-13 Score=148.55 Aligned_cols=180 Identities=29% Similarity=0.359 Sum_probs=115.8
Q ss_pred cccCChHHHHHHHHHHHH-hcChhHHhh----hCC-CCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH-HH
Q 003476 333 DVAGVDEAKEELEEIVEF-LRSPDKYIR----LGA-RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LY 405 (816)
Q Consensus 333 DV~G~ee~K~~L~eiV~~-Lk~p~~~~~----lg~-~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~-~~ 405 (816)
-|+|++++|+.|...+.. .+.-..... -+. ..+.++||+||||||||++|+++|..+++||..++++.+.. .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 479999999999776622 111000000 001 12357999999999999999999999999999999887653 47
Q ss_pred hhcc-hHHHHHHHHHH----HhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCC-----------CC
Q 003476 406 VGMG-ASRVRDLFARA----KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------SN 469 (816)
Q Consensus 406 vG~~-~~~vr~lF~~A----~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~-----------~~ 469 (816)
+|.. ...+..++..+ ....++||||||||.+.+++.+.. ...+-..+.+.+.||..|+|.. +.
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s-~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~ 236 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPS-ITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPY 236 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhcccc-ccccccchhHHHHHHHHhhccceecccCCCccccC
Confidence 7764 33344444322 234678999999999987543210 0111111245566666666532 12
Q ss_pred CcEEEEEEcCCCC--------------------------------------------------CCCcccCCCCcccceEE
Q 003476 470 SAVIVLGATNRSD--------------------------------------------------VLDPALRRPGRFDRVVM 499 (816)
Q Consensus 470 ~~ViVIaATN~pd--------------------------------------------------~LDpALlRpGRFdr~I~ 499 (816)
.+.++|.|+|-.. -+.|+|+ ||+|..+.
T Consensus 237 ~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~ 314 (413)
T TIGR00382 237 QEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIAT 314 (413)
T ss_pred CCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEee
Confidence 3467777877510 0234554 59999999
Q ss_pred ecCCCHHHHHHHHHHH
Q 003476 500 VETPDKIGREAILKVH 515 (816)
Q Consensus 500 v~~Pd~~eR~~ILk~~ 515 (816)
+.+.+.++..+|+...
T Consensus 315 f~pL~~~~L~~Il~~~ 330 (413)
T TIGR00382 315 LEKLDEEALIAILTKP 330 (413)
T ss_pred cCCCCHHHHHHHHHHH
Confidence 9999999999988763
No 134
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.45 E-value=1.3e-12 Score=157.32 Aligned_cols=165 Identities=22% Similarity=0.325 Sum_probs=116.6
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCCCC-CeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH-----HHh
Q 003476 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPP-RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-----LYV 406 (816)
Q Consensus 333 DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~p-kGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~-----~~v 406 (816)
.|+|++++++.|.+.+...+..-. ....| ..+||+||||||||.+|+++|..++.+|+.++++++.+ .+.
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~----~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~Li 534 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLG----HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcccc----CCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHc
Confidence 489999999999888865432100 01234 35999999999999999999999999999999998754 233
Q ss_pred hcchHH-----HHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCC--C-------CCcE
Q 003476 407 GMGASR-----VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--S-------NSAV 472 (816)
Q Consensus 407 G~~~~~-----vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~--~-------~~~V 472 (816)
|..... -..+.+..+....|||||||||.+.+ .+.+.|++.||.-. . -.++
T Consensus 535 G~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~---------------~v~~~LLq~ld~G~ltd~~g~~vd~rn~ 599 (758)
T PRK11034 535 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP---------------DVFNLLLQVMDNGTLTDNNGRKADFRNV 599 (758)
T ss_pred CCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH---------------HHHHHHHHHHhcCeeecCCCceecCCCc
Confidence 322111 11223333445568999999999853 24566666665211 1 1468
Q ss_pred EEEEEcCCC-------------------------CCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhc
Q 003476 473 IVLGATNRS-------------------------DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK 518 (816)
Q Consensus 473 iVIaATN~p-------------------------d~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~ 518 (816)
+||+|||.- ..+.|+|+. |+|.+|.|.+.+.++..+|+..++.+
T Consensus 600 iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~ 668 (758)
T PRK11034 600 VLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVE 668 (758)
T ss_pred EEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence 899999932 125577776 99999999999999999999887754
No 135
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.42 E-value=6.4e-13 Score=148.92 Aligned_cols=176 Identities=30% Similarity=0.429 Sum_probs=127.5
Q ss_pred cccCChHHHHHHHHHHHH-hcChhHHhhhC-CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH-HHhh-c
Q 003476 333 DVAGVDEAKEELEEIVEF-LRSPDKYIRLG-ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LYVG-M 408 (816)
Q Consensus 333 DV~G~ee~K~~L~eiV~~-Lk~p~~~~~lg-~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~-~~vG-~ 408 (816)
.|+|++++|+.+...+.. ++.......+. ...|+++||+||||||||++|++||..+++||+.++++.|.+ .|+| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 399999999999776632 11110000000 113689999999999999999999999999999999998887 5888 4
Q ss_pred chHHHHHHHHHHH-------------------------------------------------------------------
Q 003476 409 GASRVRDLFARAK------------------------------------------------------------------- 421 (816)
Q Consensus 409 ~~~~vr~lF~~A~------------------------------------------------------------------- 421 (816)
.+..++++|+.|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 4566777776661
Q ss_pred ---h--------------------------------------------------------------------cCCEEEEE
Q 003476 422 ---K--------------------------------------------------------------------EAPSIIFI 430 (816)
Q Consensus 422 ---~--------------------------------------------------------------------~aP~ILfI 430 (816)
. ..-.||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0 12349999
Q ss_pred cCccchhhccCCccccccchHHHHHHHHHHhhccCCC--------CCCcEEEEEEc----CCCCCCCcccCCCCcccceE
Q 003476 431 DEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------SNSAVIVLGAT----NRSDVLDPALRRPGRFDRVV 498 (816)
Q Consensus 431 DEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~--------~~~~ViVIaAT----N~pd~LDpALlRpGRFdr~I 498 (816)
||||.|+...+.. +.+-..+.+-..||..|+|-. ...+|++||+- ..|+.|-|.|. |||...+
T Consensus 256 DEiDKIa~~~~~~---~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v 330 (443)
T PRK05201 256 DEIDKIAARGGSS---GPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRV 330 (443)
T ss_pred EcchhhcccCCCC---CCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEE
Confidence 9999999765321 222233456678888888732 24678888876 34666778887 5999999
Q ss_pred EecCCCHHHHHHHHH
Q 003476 499 MVETPDKIGREAILK 513 (816)
Q Consensus 499 ~v~~Pd~~eR~~ILk 513 (816)
.+..++.++..+||.
T Consensus 331 ~L~~L~~~dL~~ILt 345 (443)
T PRK05201 331 ELDALTEEDFVRILT 345 (443)
T ss_pred ECCCCCHHHHHHHhc
Confidence 999999999988873
No 136
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.42 E-value=6.2e-12 Score=149.15 Aligned_cols=221 Identities=23% Similarity=0.299 Sum_probs=137.4
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------CCcE
Q 003476 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPF 393 (816)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el----------gvpf 393 (816)
+..++.+|+|++|++.+.+.+...+. ...+..++|+||||||||++|+++++.. +.+|
T Consensus 146 ~~~rp~~~~~iiGqs~~~~~l~~~ia------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~f 213 (615)
T TIGR02903 146 SLLRPRAFSEIVGQERAIKALLAKVA------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPF 213 (615)
T ss_pred hhcCcCcHHhceeCcHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCe
Confidence 33456789999999998887654331 1235579999999999999999998754 4689
Q ss_pred EEeechhhH-------HHHhhcchHH----HHHHHHH----------HHhcCCEEEEEcCccchhhccCCccccccchHH
Q 003476 394 ISCSASEFV-------ELYVGMGASR----VRDLFAR----------AKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDER 452 (816)
Q Consensus 394 i~is~s~~~-------~~~vG~~~~~----vr~lF~~----------A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~ 452 (816)
+.++|..+. ....+..... .+..+.. .......+|||||++.+....+
T Consensus 214 v~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q----------- 282 (615)
T TIGR02903 214 VEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQ----------- 282 (615)
T ss_pred EEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHH-----------
Confidence 999987641 1112211110 1111110 0012345999999998754322
Q ss_pred HHHHHHHHhhc-----------------------cCCCCCCcEEEEEE-cCCCCCCCcccCCCCcccceEEecCCCHHHH
Q 003476 453 EQTLNQLLTEM-----------------------DGFDSNSAVIVLGA-TNRSDVLDPALRRPGRFDRVVMVETPDKIGR 508 (816)
Q Consensus 453 ~~~Ln~LL~em-----------------------Dg~~~~~~ViVIaA-TN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR 508 (816)
..+..++..- ..-.....+++|++ |+.++.++++|++ ||. .+.+++++.++.
T Consensus 283 -~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi 358 (615)
T TIGR02903 283 -NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDI 358 (615)
T ss_pred -HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHH
Confidence 1111222110 00011234566655 4668889999987 886 678899999999
Q ss_pred HHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh--------CCccccHHHHHHHHHH
Q 003476 509 EAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL--------NKVVVEKIDFIHAVER 574 (816)
Q Consensus 509 ~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~--------~~~~It~~d~~~Al~r 574 (816)
..|++.++.+.++.+.++ .++.|+..+. .++...+++..+...+..+ ....|+.+|+.+++..
T Consensus 359 ~~Il~~~a~~~~v~ls~e-al~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 359 ALIVLNAAEKINVHLAAG-VEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQI 429 (615)
T ss_pred HHHHHHHHHHcCCCCCHH-HHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCC
Confidence 999999998765555443 3566666654 4555556665554443211 2347899999988854
No 137
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.41 E-value=2.1e-12 Score=156.28 Aligned_cols=163 Identities=28% Similarity=0.383 Sum_probs=117.2
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCC---CCCCe-EEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH---
Q 003476 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGA---RPPRG-VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL--- 404 (816)
Q Consensus 332 ~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~---~~pkG-VLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~--- 404 (816)
+.|+|++++++.+.+.+...+. |. ..|.+ +||+||||||||+||+++|..++.+++.++++++.+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~-------g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~ 526 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRA-------GLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTV 526 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhc-------CCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccH
Confidence 3588999988888877665321 22 23444 8999999999999999999999999999999988652
Q ss_pred --Hhhcc-----hHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCC---------C
Q 003476 405 --YVGMG-----ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------S 468 (816)
Q Consensus 405 --~vG~~-----~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~---------~ 468 (816)
..|.. ......+.+..+....+||+|||||.+.+ .+.+.|++.||... .
T Consensus 527 ~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~---------------~~~~~Ll~~ld~g~~~d~~g~~vd 591 (731)
T TIGR02639 527 SRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHP---------------DIYNILLQVMDYATLTDNNGRKAD 591 (731)
T ss_pred HHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCH---------------HHHHHHHHhhccCeeecCCCcccC
Confidence 22221 11222344444556668999999998742 34566777666421 1
Q ss_pred CCcEEEEEEcCCCC-------------------------CCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhc
Q 003476 469 NSAVIVLGATNRSD-------------------------VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK 518 (816)
Q Consensus 469 ~~~ViVIaATN~pd-------------------------~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~ 518 (816)
-.+++||+|||... .+.|.|+. |||..|.|.+.+.++..+|++..+.+
T Consensus 592 ~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~ 664 (731)
T TIGR02639 592 FRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDE 664 (731)
T ss_pred CCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHH
Confidence 13578999998631 24566665 99999999999999999999988864
No 138
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.40 E-value=7.9e-12 Score=140.15 Aligned_cols=229 Identities=21% Similarity=0.259 Sum_probs=161.4
Q ss_pred CCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEeech
Q 003476 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSAS 399 (816)
Q Consensus 325 ~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el-----gvpfi~is~s 399 (816)
-.+..||++.+.-+.-.....-....-..| ...-..++||||.|.|||+|++|+++++ +..+++++..
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~va~~~-------g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se 152 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKAVAENP-------GGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE 152 (408)
T ss_pred CCCCCchhheeeCCchHHHHHHHHHHHhcc-------CCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH
Confidence 456789999887665443333333333332 1234559999999999999999999876 3468899999
Q ss_pred hhHHHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcC
Q 003476 400 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (816)
Q Consensus 400 ~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN 479 (816)
+|...++......-.+-|+.-. +-.+++||+|+.+..+.. ...+.-.++|.+.. .++-+|+.+..
T Consensus 153 ~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~~------~qeefFh~FN~l~~-------~~kqIvltsdr 217 (408)
T COG0593 153 DFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKER------TQEEFFHTFNALLE-------NGKQIVLTSDR 217 (408)
T ss_pred HHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCChh------HHHHHHHHHHHHHh-------cCCEEEEEcCC
Confidence 9988776654444444565555 345899999999875421 12222233333332 34456766666
Q ss_pred CCCCC---CcccCCCCccc--ceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 003476 480 RSDVL---DPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL 554 (816)
Q Consensus 480 ~pd~L---DpALlRpGRFd--r~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~ 554 (816)
.|..+ +|.|.+ ||. ..+.+.+|+.+.|.+||+..+...++.+++++ ...+|..... +.++|+.+++.....
T Consensus 218 ~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev-~~~la~~~~~-nvReLegaL~~l~~~ 293 (408)
T COG0593 218 PPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEV-LEFLAKRLDR-NVRELEGALNRLDAF 293 (408)
T ss_pred CchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHhhc-cHHHHHHHHHHHHHH
Confidence 67554 578877 775 57788899999999999999998888887775 6667776654 789999999998888
Q ss_pred HHHhCCccccHHHHHHHHHHHHcchh
Q 003476 555 AGRLNKVVVEKIDFIHAVERSIAGIE 580 (816)
Q Consensus 555 A~r~~~~~It~~d~~~Al~r~i~g~e 580 (816)
|...++ .||.+.+.+++.......+
T Consensus 294 a~~~~~-~iTi~~v~e~L~~~~~~~~ 318 (408)
T COG0593 294 ALFTKR-AITIDLVKEILKDLLRAGE 318 (408)
T ss_pred HHhcCc-cCcHHHHHHHHHHhhcccc
Confidence 876665 8999999999887765443
No 139
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=6.3e-12 Score=148.84 Aligned_cols=211 Identities=19% Similarity=0.257 Sum_probs=146.1
Q ss_pred CCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEE--------Ee
Q 003476 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI--------SC 396 (816)
Q Consensus 325 ~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi--------~i 396 (816)
..++.+|+||+|++.+++.|...+.. .+.|+.+|||||+|+|||++|+++|..+.|.-. .|
T Consensus 10 kyRP~~f~~viGq~~~~~~L~~~i~~-----------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C 78 (614)
T PRK14971 10 KYRPSTFESVVGQEALTTTLKNAIAT-----------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNEC 78 (614)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcc
Confidence 45678999999999999988877642 346777999999999999999999998764211 00
Q ss_pred -echhhHHH-------Hh---hcchHHHHHHHHHHHhc----CCEEEEEcCccchhhccCCccccccchHHHHHHHHHHh
Q 003476 397 -SASEFVEL-------YV---GMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (816)
Q Consensus 397 -s~s~~~~~-------~v---G~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~ 461 (816)
+|..+.+. +- ..+...++++.+.+... ...|++|||+|.+.. ...|.|+.
T Consensus 79 ~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~---------------~a~naLLK 143 (614)
T PRK14971 79 ESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ---------------AAFNAFLK 143 (614)
T ss_pred hHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH---------------HHHHHHHH
Confidence 11111110 00 11234577777666432 234999999998842 34578888
Q ss_pred hccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCH
Q 003476 462 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541 (816)
Q Consensus 462 emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sg 541 (816)
.|+.. ...+++|.+|+.+..|-++|++ |. ..+.|..++.++....++..+.+.++.+.++ .++.|+..+.| +.
T Consensus 144 ~LEep--p~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~-al~~La~~s~g-dl 216 (614)
T PRK14971 144 TLEEP--PSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPE-ALNVIAQKADG-GM 216 (614)
T ss_pred HHhCC--CCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CH
Confidence 88843 3456677777777888899987 54 4799999999999999999888877765544 47778888755 67
Q ss_pred HHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003476 542 ADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (816)
Q Consensus 542 aDL~~LvneAa~~A~r~~~~~It~~d~~~Al 572 (816)
+++.++++.....+ +.. |+.+++.+.+
T Consensus 217 r~al~~Lekl~~y~---~~~-It~~~V~~~l 243 (614)
T PRK14971 217 RDALSIFDQVVSFT---GGN-ITYKSVIENL 243 (614)
T ss_pred HHHHHHHHHHHHhc---cCC-ccHHHHHHHh
Confidence 77777776655444 222 6665555443
No 140
>PRK09087 hypothetical protein; Validated
Probab=99.39 E-value=3.5e-12 Score=133.66 Aligned_cols=172 Identities=18% Similarity=0.197 Sum_probs=118.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccc
Q 003476 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFR 445 (816)
Q Consensus 366 kGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~ 445 (816)
+.++|+||+|+|||+|+++++...++.++. ..++...+ +..... .+|+|||+|.+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~--~~~~~~~~-----------~~~~~~---~~l~iDDi~~~~~------- 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIH--PNEIGSDA-----------ANAAAE---GPVLIEDIDAGGF------- 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEec--HHHcchHH-----------HHhhhc---CeEEEECCCCCCC-------
Confidence 349999999999999999999987766543 33333222 111111 3799999997631
Q ss_pred cccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCC---CCCcccCCCCccc--ceEEecCCCHHHHHHHHHHHHhcCC
Q 003476 446 IVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD---VLDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKE 520 (816)
Q Consensus 446 ~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd---~LDpALlRpGRFd--r~I~v~~Pd~~eR~~ILk~~l~~~~ 520 (816)
... .+-++++.+. .....+||+++..|. ...+.|++ ||. ..+.+..|+.++|.+|++.++...+
T Consensus 102 --~~~----~lf~l~n~~~---~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~ 170 (226)
T PRK09087 102 --DET----GLFHLINSVR---QAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQ 170 (226)
T ss_pred --CHH----HHHHHHHHHH---hCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcC
Confidence 111 2333343332 234456666665554 23677877 774 7899999999999999999999888
Q ss_pred CCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHH
Q 003476 521 LPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (816)
Q Consensus 521 l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~~~~It~~d~~~Al~r 574 (816)
+.+++++ ++.|+++..+ +.+.+..+++.....+...+ ..||...+.+++..
T Consensus 171 ~~l~~ev-~~~La~~~~r-~~~~l~~~l~~L~~~~~~~~-~~it~~~~~~~l~~ 221 (226)
T PRK09087 171 LYVDPHV-VYYLVSRMER-SLFAAQTIVDRLDRLALERK-SRITRALAAEVLNE 221 (226)
T ss_pred CCCCHHH-HHHHHHHhhh-hHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHh
Confidence 8777664 7888888875 77888887777766665544 55888888888764
No 141
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.38 E-value=3.3e-12 Score=141.47 Aligned_cols=222 Identities=22% Similarity=0.278 Sum_probs=139.8
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-------CCcEEEee--
Q 003476 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISCS-- 397 (816)
Q Consensus 327 ~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el-------gvpfi~is-- 397 (816)
+...|++|+|++++|..|.-.+ .+| ...|+||.||+|||||++||+++..+ +.||....
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~---~~p---------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~ 79 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNV---IDP---------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSD 79 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhc---cCC---------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCC
Confidence 4568999999999998776533 222 23589999999999999999997755 23443100
Q ss_pred ----chhhHHH-------------------HhhcchHHH------HHHHHHHH---------hcCCEEEEEcCccchhhc
Q 003476 398 ----ASEFVEL-------------------YVGMGASRV------RDLFARAK---------KEAPSIIFIDEIDAVAKS 439 (816)
Q Consensus 398 ----~s~~~~~-------------------~vG~~~~~v------r~lF~~A~---------~~aP~ILfIDEIDaL~~~ 439 (816)
++++... -.+..+.++ ...|.... .....+||||||+.+...
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~ 159 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDH 159 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHH
Confidence 0111110 011222221 11122111 112349999999998643
Q ss_pred cCCccccccchHHHHHHHHHHhhcc---------CC--CCCCcEEEEEEcCCCC-CCCcccCCCCcccceEEecCCC-HH
Q 003476 440 RDGRFRIVSNDEREQTLNQLLTEMD---------GF--DSNSAVIVLGATNRSD-VLDPALRRPGRFDRVVMVETPD-KI 506 (816)
Q Consensus 440 r~~~~~~~~~~e~~~~Ln~LL~emD---------g~--~~~~~ViVIaATN~pd-~LDpALlRpGRFdr~I~v~~Pd-~~ 506 (816)
.+ +.|+..|+ |. ....++++|++.|..+ .+.++|+. ||..++.+..|+ .+
T Consensus 160 ~Q---------------~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~ 222 (350)
T CHL00081 160 LV---------------DILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPE 222 (350)
T ss_pred HH---------------HHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChH
Confidence 22 23444332 11 1235688888888765 68999998 999999999998 59
Q ss_pred HHHHHHHHHHhcCC-----------------------------CCCcccc--CHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 003476 507 GREAILKVHVSKKE-----------------------------LPLAKDI--DLGDIASMTTGFTGADLANLVNEAALLA 555 (816)
Q Consensus 507 eR~~ILk~~l~~~~-----------------------------l~l~~dv--dl~~LA~~t~G~SgaDL~~LvneAa~~A 555 (816)
.+.+|++....... +.+++++ -+..++..+.--|++--..+++.|...|
T Consensus 223 ~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~A 302 (350)
T CHL00081 223 LRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALA 302 (350)
T ss_pred HHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHH
Confidence 99999987543110 1111111 0122333443346676778888899999
Q ss_pred HHhCCccccHHHHHHHHHHHHc
Q 003476 556 GRLNKVVVEKIDFIHAVERSIA 577 (816)
Q Consensus 556 ~r~~~~~It~~d~~~Al~r~i~ 577 (816)
..+++..|+.+|+..+..-++.
T Consensus 303 al~GR~~V~pdDv~~~a~~vL~ 324 (350)
T CHL00081 303 AFEGRTEVTPKDIFKVITLCLR 324 (350)
T ss_pred HHcCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999877764
No 142
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.35 E-value=7.5e-12 Score=138.34 Aligned_cols=216 Identities=24% Similarity=0.297 Sum_probs=136.3
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-------CCcEE--------
Q 003476 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFI-------- 394 (816)
Q Consensus 330 tf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el-------gvpfi-------- 394 (816)
-|..|+|++++|..|.-.+ -+| ...++||.|+||+|||+|++++++-+ ++|+-
T Consensus 2 pf~~ivgq~~~~~al~~~~---~~~---------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNV---IDP---------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHh---cCC---------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 4889999999998764321 122 13469999999999999999999866 33332
Q ss_pred -Eeechh----------------hHHHHhhcchHHHHH------------------HHHHHHhcCCEEEEEcCccchhhc
Q 003476 395 -SCSASE----------------FVELYVGMGASRVRD------------------LFARAKKEAPSIIFIDEIDAVAKS 439 (816)
Q Consensus 395 -~is~s~----------------~~~~~vG~~~~~vr~------------------lF~~A~~~aP~ILfIDEIDaL~~~ 439 (816)
..+|.. |.+...+..+.++-. ++.+| ...+||||||+.+...
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A---~~GvL~lDEi~~L~~~ 146 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARA---NRGILYIDEVNLLEDH 146 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceec---cCCEEEecChHhCCHH
Confidence 011110 011111111111111 11122 2359999999987543
Q ss_pred cCCccccccchHHHHHHHHHHhhccC---------C--CCCCcEEEEEEcCCCC-CCCcccCCCCcccceEEecCCCH-H
Q 003476 440 RDGRFRIVSNDEREQTLNQLLTEMDG---------F--DSNSAVIVLGATNRSD-VLDPALRRPGRFDRVVMVETPDK-I 506 (816)
Q Consensus 440 r~~~~~~~~~~e~~~~Ln~LL~emDg---------~--~~~~~ViVIaATN~pd-~LDpALlRpGRFdr~I~v~~Pd~-~ 506 (816)
+.+.|+..|+. . ....++++|+++|..+ .+.++|+. ||..++.++.|+. +
T Consensus 147 ---------------~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~e 209 (337)
T TIGR02030 147 ---------------LVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVE 209 (337)
T ss_pred ---------------HHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHH
Confidence 22334444431 1 1234688899988655 68999998 9999999999975 8
Q ss_pred HHHHHHHHHHhcC-----------------------------CCCCcccc--CHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 003476 507 GREAILKVHVSKK-----------------------------ELPLAKDI--DLGDIASMTTGFTGADLANLVNEAALLA 555 (816)
Q Consensus 507 eR~~ILk~~l~~~-----------------------------~l~l~~dv--dl~~LA~~t~G~SgaDL~~LvneAa~~A 555 (816)
+|.+|++...... .+.+++++ .+..++..+..-|.+....+++.|...|
T Consensus 210 er~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~A 289 (337)
T TIGR02030 210 LRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALA 289 (337)
T ss_pred HHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHH
Confidence 8899998743220 01111111 0222333443336677778899999999
Q ss_pred HHhCCccccHHHHHHHHHHHHc
Q 003476 556 GRLNKVVVEKIDFIHAVERSIA 577 (816)
Q Consensus 556 ~r~~~~~It~~d~~~Al~r~i~ 577 (816)
..+++..|+.+|+..+..-++.
T Consensus 290 al~GR~~V~~dDv~~~a~~vL~ 311 (337)
T TIGR02030 290 AFEGRTEVTVDDIRRVAVLALR 311 (337)
T ss_pred HHcCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999877764
No 143
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=6.4e-11 Score=132.37 Aligned_cols=218 Identities=21% Similarity=0.288 Sum_probs=150.3
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-----EEEeechhhHHHH-
Q 003476 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-----FISCSASEFVELY- 405 (816)
Q Consensus 332 ~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvp-----fi~is~s~~~~~~- 405 (816)
+.+.+.++..+.|..++...- ....|.++++|||||||||.+++.++.++.-+ +++++|-...+.|
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~--------~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 17 EELPHREEEINQLASFLAPAL--------RGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred ccccccHHHHHHHHHHHHHHh--------cCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence 348889988887777654322 23456679999999999999999999987433 8999987554321
Q ss_pred --------------hhcchHH-HHHHHHHHH-hcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCC
Q 003476 406 --------------VGMGASR-VRDLFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN 469 (816)
Q Consensus 406 --------------vG~~~~~-vr~lF~~A~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~ 469 (816)
.|..... ...+++... ....-||++||+|.|....+ .++..|+...+.. .
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~------------~~LY~L~r~~~~~--~ 154 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG------------EVLYSLLRAPGEN--K 154 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc------------hHHHHHHhhcccc--c
Confidence 1111111 222222222 23456999999999975432 4667777766544 5
Q ss_pred CcEEEEEEcCCC---CCCCcccCCCCcc-cceEEecCCCHHHHHHHHHHHHhcC--CCCCccccCHHHHH---hhCCCCC
Q 003476 470 SAVIVLGATNRS---DVLDPALRRPGRF-DRVVMVETPDKIGREAILKVHVSKK--ELPLAKDIDLGDIA---SMTTGFT 540 (816)
Q Consensus 470 ~~ViVIaATN~p---d~LDpALlRpGRF-dr~I~v~~Pd~~eR~~ILk~~l~~~--~l~l~~dvdl~~LA---~~t~G~S 540 (816)
.+|.+|+.+|.. +.+||.+.+ +| ...|.|++++.+|...|++..+... .-.+++++ ++.+| ....| +
T Consensus 155 ~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~v-l~lia~~~a~~~G-D 230 (366)
T COG1474 155 VKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDV-LKLIAALVAAESG-D 230 (366)
T ss_pred eeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccH-HHHHHHHHHHcCc-c
Confidence 678999999876 578888876 43 3468999999999999999887642 11122222 33333 34444 5
Q ss_pred HHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHH
Q 003476 541 GADLANLVNEAALLAGRLNKVVVEKIDFIHAVERS 575 (816)
Q Consensus 541 gaDL~~LvneAa~~A~r~~~~~It~~d~~~Al~r~ 575 (816)
.+-.-.+++.|+..|.+++...++.+++..|.+..
T Consensus 231 AR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~ 265 (366)
T COG1474 231 ARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEI 265 (366)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHh
Confidence 56666889999999999999999999999995443
No 144
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.33 E-value=1.3e-11 Score=135.00 Aligned_cols=138 Identities=19% Similarity=0.232 Sum_probs=99.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH--HhhcchHH----------HHHHHHHHHhcCCEEEEEcC
Q 003476 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL--YVGMGASR----------VRDLFARAKKEAPSIIFIDE 432 (816)
Q Consensus 365 pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~--~vG~~~~~----------vr~lF~~A~~~aP~ILfIDE 432 (816)
.++|||.||||||||++|+.+|.+++.|++.++++..... .+|...-. ....+..|.. .+++|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 4569999999999999999999999999999998866553 34432110 1123444543 468999999
Q ss_pred ccchhhccCCccccccchHHHHHHHHHHhh-----cc----CCCCCCcEEEEEEcCCCC------------CCCcccCCC
Q 003476 433 IDAVAKSRDGRFRIVSNDEREQTLNQLLTE-----MD----GFDSNSAVIVLGATNRSD------------VLDPALRRP 491 (816)
Q Consensus 433 IDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e-----mD----g~~~~~~ViVIaATN~pd------------~LDpALlRp 491 (816)
||...++ ....|+.+|.. +. .+.....+.||||.|..+ .|++|++.
T Consensus 143 in~a~p~------------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD- 209 (327)
T TIGR01650 143 YDAGRPD------------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD- 209 (327)
T ss_pred hhccCHH------------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh-
Confidence 9987432 22445556552 11 123456789999999854 46788888
Q ss_pred CcccceEEecCCCHHHHHHHHHHHHh
Q 003476 492 GRFDRVVMVETPDKIGREAILKVHVS 517 (816)
Q Consensus 492 GRFdr~I~v~~Pd~~eR~~ILk~~l~ 517 (816)
||-..+.++.|+.++-.+|+.....
T Consensus 210 -RF~i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 210 -RWSIVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred -heeeEeeCCCCCHHHHHHHHHhhcc
Confidence 9987889999999999999987653
No 145
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.31 E-value=2.4e-11 Score=113.57 Aligned_cols=124 Identities=40% Similarity=0.610 Sum_probs=81.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHHhhcchHH---HHHHHHHHHhcCCEEEEEcCccchh
Q 003476 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMGASR---VRDLFARAKKEAPSIIFIDEIDAVA 437 (816)
Q Consensus 364 ~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~~~vG~~~~~---vr~lF~~A~~~aP~ILfIDEIDaL~ 437 (816)
..++++++||||||||++++.++..+ +.+++.+++.++........... ....+..+....+++|+|||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 45679999999999999999999998 89999999887765433222111 1222334445668899999999873
Q ss_pred hccCCccccccchHHHHHHHHHHhhccCC-CCCCcEEEEEEcCCCC--CCCcccCCCCcccceEEec
Q 003476 438 KSRDGRFRIVSNDEREQTLNQLLTEMDGF-DSNSAVIVLGATNRSD--VLDPALRRPGRFDRVVMVE 501 (816)
Q Consensus 438 ~~r~~~~~~~~~~e~~~~Ln~LL~emDg~-~~~~~ViVIaATN~pd--~LDpALlRpGRFdr~I~v~ 501 (816)
.. ....+..++..+... ....++.+|+++|... .+++.+.. ||+.++.++
T Consensus 98 ~~------------~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 98 RG------------AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred HH------------HHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 21 111222222222111 1236788899998876 67777776 888676664
No 146
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.31 E-value=3e-11 Score=130.33 Aligned_cols=221 Identities=19% Similarity=0.242 Sum_probs=144.4
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---------CCcEEEeech-
Q 003476 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSAS- 399 (816)
Q Consensus 330 tf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el---------gvpfi~is~s- 399 (816)
.=+.-+|+..+++.|..+.+.+..|.. ..+.++||+|++|.|||++++.++... .+|++.+.+.
T Consensus 32 ~~~rWIgY~~A~~~L~~L~~Ll~~P~~------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~ 105 (302)
T PF05621_consen 32 RADRWIGYPRAKEALDRLEELLEYPKR------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPP 105 (302)
T ss_pred hcCCeecCHHHHHHHHHHHHHHhCCcc------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCC
Confidence 334568999999999999998888865 345579999999999999999998754 3688877643
Q ss_pred -----hhHHHH---hh------c-chHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhcc
Q 003476 400 -----EFVELY---VG------M-GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD 464 (816)
Q Consensus 400 -----~~~~~~---vG------~-~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emD 464 (816)
.|.... .| . ..+.-.......+...+.+|+|||+|.+.. +....++.++|.|-...+
T Consensus 106 ~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLa--------Gs~~~qr~~Ln~LK~L~N 177 (302)
T PF05621_consen 106 EPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLA--------GSYRKQREFLNALKFLGN 177 (302)
T ss_pred CCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhc--------ccHHHHHHHHHHHHHHhh
Confidence 121110 01 1 112223334555667788999999999863 334456667776655433
Q ss_pred CCCCCCcEEEEEEcCCCC--CCCcccCCCCcccceEEecCCC-HHHHHHHHHHHHhcCCCCCccccCH----HHHHhhCC
Q 003476 465 GFDSNSAVIVLGATNRSD--VLDPALRRPGRFDRVVMVETPD-KIGREAILKVHVSKKELPLAKDIDL----GDIASMTT 537 (816)
Q Consensus 465 g~~~~~~ViVIaATN~pd--~LDpALlRpGRFdr~I~v~~Pd-~~eR~~ILk~~l~~~~l~l~~dvdl----~~LA~~t~ 537 (816)
+-+-.++.+|+..-.. .-|+.+-+ ||+ .+.++... .++...++..+-....+.-...... ..|-..+.
T Consensus 178 --eL~ipiV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~ 252 (302)
T PF05621_consen 178 --ELQIPIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSE 252 (302)
T ss_pred --ccCCCeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcC
Confidence 2223456666543322 23677766 997 45555433 3455666666654432222233333 34456777
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCccccHHHHHH
Q 003476 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIH 570 (816)
Q Consensus 538 G~SgaDL~~LvneAa~~A~r~~~~~It~~d~~~ 570 (816)
|. .+++.++++.|+..|.+.|.+.||.+.++.
T Consensus 253 G~-iG~l~~ll~~aA~~AI~sG~E~It~~~l~~ 284 (302)
T PF05621_consen 253 GL-IGELSRLLNAAAIAAIRSGEERITREILDK 284 (302)
T ss_pred Cc-hHHHHHHHHHHHHHHHhcCCceecHHHHhh
Confidence 75 568999999999999999999999987765
No 147
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.30 E-value=1.8e-11 Score=145.93 Aligned_cols=215 Identities=23% Similarity=0.283 Sum_probs=138.8
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc--------------------
Q 003476 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------------------- 389 (816)
Q Consensus 330 tf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el-------------------- 389 (816)
-|.+|+|++.+|..|.-.. -++ ...||||.||||||||++|++|+..+
T Consensus 2 pf~~ivGq~~~~~al~~~a---v~~---------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNA---VDP---------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHh---hCC---------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 4889999999997664332 121 11469999999999999999999877
Q ss_pred ---------------CCcEEEeechhhHHHHhhcc--hHHH--------HHHHHHHHhcCCEEEEEcCccchhhccCCcc
Q 003476 390 ---------------EVPFISCSASEFVELYVGMG--ASRV--------RDLFARAKKEAPSIIFIDEIDAVAKSRDGRF 444 (816)
Q Consensus 390 ---------------gvpfi~is~s~~~~~~vG~~--~~~v--------r~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~ 444 (816)
..||+.+.++...+..+|.- ...+ ..++..| ...|||||||+.+...
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l~~~----- 141 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLLDDH----- 141 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhCCHH-----
Confidence 35777766554333333321 0000 1112222 2249999999998643
Q ss_pred ccccchHHHHHHHHHHhhccCC-----------CCCCcEEEEEEcCCC-CCCCcccCCCCcccceEEecCCC-HHHHHHH
Q 003476 445 RIVSNDEREQTLNQLLTEMDGF-----------DSNSAVIVLGATNRS-DVLDPALRRPGRFDRVVMVETPD-KIGREAI 511 (816)
Q Consensus 445 ~~~~~~e~~~~Ln~LL~emDg~-----------~~~~~ViVIaATN~p-d~LDpALlRpGRFdr~I~v~~Pd-~~eR~~I 511 (816)
+.+.|+..|+.- .....+++|+++|.. ..+.++|+. ||+.+|.++.|. .+++.+|
T Consensus 142 ----------~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~i 209 (633)
T TIGR02442 142 ----------LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEI 209 (633)
T ss_pred ----------HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHH
Confidence 345555555421 112468999999964 368889998 999889888764 5777777
Q ss_pred HHHHHhcC-----------------------------CCCCccccCHHHHHhhC--CCC-CHHHHHHHHHHHHHHHHHhC
Q 003476 512 LKVHVSKK-----------------------------ELPLAKDIDLGDIASMT--TGF-TGADLANLVNEAALLAGRLN 559 (816)
Q Consensus 512 Lk~~l~~~-----------------------------~l~l~~dvdl~~LA~~t--~G~-SgaDL~~LvneAa~~A~r~~ 559 (816)
++..+... .+.+.++ .++.++..+ .|. +.+....+++-|...|..++
T Consensus 210 l~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~-~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~g 288 (633)
T TIGR02442 210 IRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDS-LIRFISELCIEFGVDGHRADIVMARAARALAALDG 288 (633)
T ss_pred HHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcC
Confidence 76533210 0111111 122333222 234 45666678888989999999
Q ss_pred CccccHHHHHHHHHHHHc
Q 003476 560 KVVVEKIDFIHAVERSIA 577 (816)
Q Consensus 560 ~~~It~~d~~~Al~r~i~ 577 (816)
+..|+.+|+..|++-++.
T Consensus 289 r~~V~~~Dv~~A~~lvL~ 306 (633)
T TIGR02442 289 RRRVTAEDVREAAELVLP 306 (633)
T ss_pred CCcCCHHHHHHHHHHHhh
Confidence 999999999999988774
No 148
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.29 E-value=4.1e-11 Score=146.75 Aligned_cols=163 Identities=29% Similarity=0.386 Sum_probs=113.0
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCe-EEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH---
Q 003476 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRG-VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL--- 404 (816)
Q Consensus 332 ~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkG-VLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~~--- 404 (816)
+.|+|++++.+.+.+.+...+..-. ....|.| +||+||||||||.+|+++|..+ ...++.++++++.+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~----~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~ 641 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLE----DPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTV 641 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCC----CCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhh
Confidence 4689999999888777755321100 0134665 7999999999999999999988 468899999988653
Q ss_pred ---------HhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCC--C-----
Q 003476 405 ---------YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--S----- 468 (816)
Q Consensus 405 ---------~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~--~----- 468 (816)
|+|.... ..+.+..+.+..|||+|||||...+ .+.+.|++.+|.-. .
T Consensus 642 ~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka~~---------------~v~~~Llq~ld~g~l~d~~Gr~ 704 (852)
T TIGR03345 642 SRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKAHP---------------DVLELFYQVFDKGVMEDGEGRE 704 (852)
T ss_pred ccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhcCH---------------HHHHHHHHHhhcceeecCCCcE
Confidence 3332221 1233444556679999999986532 34455666665321 0
Q ss_pred --CCcEEEEEEcCCCC-----------------------------CCCcccCCCCcccceEEecCCCHHHHHHHHHHHHh
Q 003476 469 --NSAVIVLGATNRSD-----------------------------VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS 517 (816)
Q Consensus 469 --~~~ViVIaATN~pd-----------------------------~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~ 517 (816)
-.+.+||+|||... .+.|+|+. |++ .|.|.+.+.++..+|+...+.
T Consensus 705 vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~ 781 (852)
T TIGR03345 705 IDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLD 781 (852)
T ss_pred EeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHH
Confidence 14689999998521 14466666 887 899999999999999988875
Q ss_pred c
Q 003476 518 K 518 (816)
Q Consensus 518 ~ 518 (816)
+
T Consensus 782 ~ 782 (852)
T TIGR03345 782 R 782 (852)
T ss_pred H
Confidence 4
No 149
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.24 E-value=1.7e-10 Score=128.38 Aligned_cols=190 Identities=16% Similarity=0.186 Sum_probs=126.0
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC-------cEEEe---
Q 003476 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISC--- 396 (816)
Q Consensus 327 ~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgv-------pfi~i--- 396 (816)
.+..|++|+|++++++.|...+.. .+.|..+||+||+|+|||++|+++|..+.+ |....
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~-----------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYRE-----------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHc-----------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 456899999999999998887643 356778999999999999999999998765 21110
Q ss_pred -echhhHHH--------H-h-------------hcchHHHHHHHHHHH----hcCCEEEEEcCccchhhccCCccccccc
Q 003476 397 -SASEFVEL--------Y-V-------------GMGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSN 449 (816)
Q Consensus 397 -s~s~~~~~--------~-v-------------G~~~~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~ 449 (816)
.|..+... + + .-+...+|++.+... .....|++|||+|.+..
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~----------- 155 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR----------- 155 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH-----------
Confidence 11111110 0 0 011234454443332 23446999999999853
Q ss_pred hHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCH
Q 003476 450 DEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDL 529 (816)
Q Consensus 450 ~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl 529 (816)
...|.||..|+. +..+.++|..|+.++.+.|.+++ |+ +.+.+++|+.++..++|+...... .++++ .+
T Consensus 156 ----~aanaLLk~LEE--pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~--~~~~~-~~ 223 (351)
T PRK09112 156 ----NAANAILKTLEE--PPARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQ--GSDGE-IT 223 (351)
T ss_pred ----HHHHHHHHHHhc--CCCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhccc--CCCHH-HH
Confidence 345788888885 33455666667888888899987 65 599999999999999998743221 12222 25
Q ss_pred HHHHhhCCCCCHHHHHHHHHHH
Q 003476 530 GDIASMTTGFTGADLANLVNEA 551 (816)
Q Consensus 530 ~~LA~~t~G~SgaDL~~LvneA 551 (816)
..++..+.| +++...++++..
T Consensus 224 ~~i~~~s~G-~pr~Al~ll~~~ 244 (351)
T PRK09112 224 EALLQRSKG-SVRKALLLLNYG 244 (351)
T ss_pred HHHHHHcCC-CHHHHHHHHhcC
Confidence 566666665 666665655443
No 150
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.24 E-value=1.9e-10 Score=126.83 Aligned_cols=129 Identities=31% Similarity=0.424 Sum_probs=88.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHHhhcchHHHHHH--------------HHHHHhcCCEEEEEc
Q 003476 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDL--------------FARAKKEAPSIIFID 431 (816)
Q Consensus 366 kGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~~vG~~~~~vr~l--------------F~~A~~~aP~ILfID 431 (816)
.++||.||||||||+||+++|..++.+|+.+.|......--..+...+... |...+ +|+|+|
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill~D 119 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILLLD 119 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEEEe
Confidence 459999999999999999999999999999999865442111111111111 11111 499999
Q ss_pred CccchhhccCCccccccchHHHHHHHHHHhhccC----------CCCCCcEEEEEEcC-----CCCCCCcccCCCCcccc
Q 003476 432 EIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG----------FDSNSAVIVLGATN-----RSDVLDPALRRPGRFDR 496 (816)
Q Consensus 432 EIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg----------~~~~~~ViVIaATN-----~pd~LDpALlRpGRFdr 496 (816)
||+...+ .+.+.||..|+. +.-..+++||+|.| ....|++|+++ ||..
T Consensus 120 EInra~p---------------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~ 182 (329)
T COG0714 120 EINRAPP---------------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLL 182 (329)
T ss_pred ccccCCH---------------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEE
Confidence 9987643 234555555543 34457789999999 45678999998 9988
Q ss_pred eEEecCCCHHHHHHHHHHH
Q 003476 497 VVMVETPDKIGREAILKVH 515 (816)
Q Consensus 497 ~I~v~~Pd~~eR~~ILk~~ 515 (816)
.+.++.|+.++-+.++..+
T Consensus 183 ~~~v~yp~~~~e~~~i~~~ 201 (329)
T COG0714 183 RIYVDYPDSEEEERIILAR 201 (329)
T ss_pred EEecCCCCchHHHHHHHHh
Confidence 9999999554444444433
No 151
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.23 E-value=1.2e-10 Score=134.76 Aligned_cols=211 Identities=22% Similarity=0.297 Sum_probs=132.9
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-------------------
Q 003476 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA------------------- 389 (816)
Q Consensus 329 vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el------------------- 389 (816)
..|+||.|++.+++.+.-.+ .....++|+||||||||++|+++++.+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa--------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA--------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc--------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 48999999999877654432 234579999999999999999998632
Q ss_pred ---------CCcEEEeechhhHHHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHH
Q 003476 390 ---------EVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (816)
Q Consensus 390 ---------gvpfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL 460 (816)
..||...+++......+|.+...-...+..|.. .+|||||++.+... +++.|+
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~---GvLfLDEi~e~~~~---------------~~~~L~ 316 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHN---GVLFLDELPEFKRS---------------VLDALR 316 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhccCC---CeEecCChhhCCHH---------------HHHHHH
Confidence 235554444433333334332222234444433 49999999987532 233444
Q ss_pred hhccCCC-----------CCCcEEEEEEcCCC------C-----------------CCCcccCCCCcccceEEecCCCHH
Q 003476 461 TEMDGFD-----------SNSAVIVLGATNRS------D-----------------VLDPALRRPGRFDRVVMVETPDKI 506 (816)
Q Consensus 461 ~emDg~~-----------~~~~ViVIaATN~p------d-----------------~LDpALlRpGRFdr~I~v~~Pd~~ 506 (816)
..|+... -..++.+|+++|.. + .|...|+. |||.++.++.++..
T Consensus 317 ~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~ 394 (499)
T TIGR00368 317 EPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPE 394 (499)
T ss_pred HHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHH
Confidence 4443211 12468999999863 1 47788888 99999999977554
Q ss_pred H-------------HHHHHHHHHhc----CCC---CCccccCHH----------------HHHhhCCCCCHHHHHHHHHH
Q 003476 507 G-------------REAILKVHVSK----KEL---PLAKDIDLG----------------DIASMTTGFTGADLANLVNE 550 (816)
Q Consensus 507 e-------------R~~ILk~~l~~----~~l---~l~~dvdl~----------------~LA~~t~G~SgaDL~~Lvne 550 (816)
+ |..+.+..-.. .+. .+..++.-. .-+....++|.+....+++-
T Consensus 395 ~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrv 474 (499)
T TIGR00368 395 KLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKV 474 (499)
T ss_pred HHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 3 22232211111 010 111111110 11223346899999999999
Q ss_pred HHHHHHHhCCccccHHHHHHHHH
Q 003476 551 AALLAGRLNKVVVEKIDFIHAVE 573 (816)
Q Consensus 551 Aa~~A~r~~~~~It~~d~~~Al~ 573 (816)
|..+|..++...|+.+|+.+|+.
T Consensus 475 ArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 475 ARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHHHHhhcCCCCCCHHHHHHHHh
Confidence 99999999999999999999974
No 152
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.23 E-value=1.4e-10 Score=127.69 Aligned_cols=68 Identities=38% Similarity=0.565 Sum_probs=54.3
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC--CcEEEeechhhHH
Q 003476 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVE 403 (816)
Q Consensus 329 vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elg--vpfi~is~s~~~~ 403 (816)
...+.++|+.++++.+--+++..+..+ -..+++||.||||||||.||-++|+++| +||+.++++++.+
T Consensus 21 ~~~~GlVGQ~~AReAagiiv~mIk~~K-------~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS 90 (398)
T PF06068_consen 21 YIADGLVGQEKAREAAGIIVDMIKEGK-------IAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYS 90 (398)
T ss_dssp SEETTEES-HHHHHHHHHHHHHHHTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-B
T ss_pred eccccccChHHHHHHHHHHHHHHhccc-------ccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeee
Confidence 345689999999999999999888743 3568999999999999999999999997 9999999988754
No 153
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.22 E-value=1.7e-10 Score=141.79 Aligned_cols=166 Identities=23% Similarity=0.346 Sum_probs=112.1
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH----
Q 003476 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL---- 404 (816)
Q Consensus 332 ~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~~---- 404 (816)
+.|+|++++.+.+.+.+...+..-. -..+|...+||+||||||||++|++||..+ +.+++.++++++.+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~---~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLS---DPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCC---CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHH
Confidence 5699999999988887765331100 011233458999999999999999999976 568999999887542
Q ss_pred -Hhhcch-----HHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCC--C-------C
Q 003476 405 -YVGMGA-----SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--S-------N 469 (816)
Q Consensus 405 -~vG~~~-----~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~--~-------~ 469 (816)
..|... .....+....+...-+||||||||.+.+ .+.+.|+..|+.-. . -
T Consensus 642 ~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~---------------~v~~~Ll~~l~~g~l~d~~g~~vd~ 706 (852)
T TIGR03346 642 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHP---------------DVFNVLLQVLDDGRLTDGQGRTVDF 706 (852)
T ss_pred HhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCH---------------HHHHHHHHHHhcCceecCCCeEEec
Confidence 122111 1112233334444457999999997742 24455666554211 0 1
Q ss_pred CcEEEEEEcCCCC-------------------------CCCcccCCCCcccceEEecCCCHHHHHHHHHHHHh
Q 003476 470 SAVIVLGATNRSD-------------------------VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS 517 (816)
Q Consensus 470 ~~ViVIaATN~pd-------------------------~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~ 517 (816)
.+.+||+|||... .+.|.|+. |+|..+.|.+++.++..+|+...+.
T Consensus 707 rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 707 RNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLG 777 (852)
T ss_pred CCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHH
Confidence 3578999999731 13356665 9999999999999999999888775
No 154
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.22 E-value=1.6e-10 Score=141.63 Aligned_cols=166 Identities=23% Similarity=0.314 Sum_probs=114.4
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCC-eEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH---
Q 003476 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPR-GVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL--- 404 (816)
Q Consensus 332 ~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pk-GVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~~--- 404 (816)
+.|+|++++++.+...+...+..-. ....|. .+||+||+|||||+||+++|..+ +.+++.+++++|.+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~----~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLK----NPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhccc----CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH
Confidence 5689999999988887754322100 012344 47999999999999999999987 468999999887542
Q ss_pred --Hhhcc-----hHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCC---------C
Q 003476 405 --YVGMG-----ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------S 468 (816)
Q Consensus 405 --~vG~~-----~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~---------~ 468 (816)
..|.. ......+.+..+....+||+|||+|.+.+ .+.|.|+..||... .
T Consensus 585 ~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~---------------~v~~~Llq~le~g~~~d~~g~~v~ 649 (821)
T CHL00095 585 SKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHP---------------DIFNLLLQILDDGRLTDSKGRTID 649 (821)
T ss_pred HHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCH---------------HHHHHHHHHhccCceecCCCcEEe
Confidence 22211 11122344555555558999999998742 35567777766321 1
Q ss_pred CCcEEEEEEcCCCCC-------------------------------------CCcccCCCCcccceEEecCCCHHHHHHH
Q 003476 469 NSAVIVLGATNRSDV-------------------------------------LDPALRRPGRFDRVVMVETPDKIGREAI 511 (816)
Q Consensus 469 ~~~ViVIaATN~pd~-------------------------------------LDpALlRpGRFdr~I~v~~Pd~~eR~~I 511 (816)
-.+.+||+|||.... +.|.|+. |+|.+|.|.+.+.++..+|
T Consensus 650 ~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~I 727 (821)
T CHL00095 650 FKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEI 727 (821)
T ss_pred cCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHH
Confidence 246899999985311 2245565 9999999999999999999
Q ss_pred HHHHHhc
Q 003476 512 LKVHVSK 518 (816)
Q Consensus 512 Lk~~l~~ 518 (816)
++..+.+
T Consensus 728 v~~~l~~ 734 (821)
T CHL00095 728 AEIMLKN 734 (821)
T ss_pred HHHHHHH
Confidence 9888764
No 155
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.20 E-value=3.5e-11 Score=111.10 Aligned_cols=129 Identities=33% Similarity=0.433 Sum_probs=84.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCc---EEEeechhhHHH--------------HhhcchHHHHHHHHHHHhcCCEE
Q 003476 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVP---FISCSASEFVEL--------------YVGMGASRVRDLFARAKKEAPSI 427 (816)
Q Consensus 365 pkGVLL~GPPGTGKT~LAkALA~elgvp---fi~is~s~~~~~--------------~vG~~~~~vr~lF~~A~~~aP~I 427 (816)
+..++|+||||||||++++.+|..+..+ ++.++++..... ........++.++..++...|++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4579999999999999999999999775 888887754331 12344567778888998887899
Q ss_pred EEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCC
Q 003476 428 IFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETP 503 (816)
Q Consensus 428 LfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~P 503 (816)
|||||++.+........ ............ .....+..+|+++|......+..+++ |++.++.+..+
T Consensus 82 iiiDei~~~~~~~~~~~------~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQEAL------LLLLEELRLLLL---LKSEKNLTVILTTNDEKDLGPALLRR-RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHHHH------HHhhhhhHHHHH---HHhcCCCEEEEEeCCCccCchhhhhh-ccceEEEecCC
Confidence 99999999864432100 000000000111 12235678888888633334444443 88888887655
No 156
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.20 E-value=2.9e-10 Score=139.62 Aligned_cols=167 Identities=24% Similarity=0.351 Sum_probs=111.2
Q ss_pred cccccCChHHHHHHHHHHHHhcChhHHhhhCCCCC-CeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHH-
Q 003476 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPP-RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY- 405 (816)
Q Consensus 331 f~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~p-kGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~~~- 405 (816)
++.|+|++.+.+.+.+.+...+..-. ....| ..+||+||||||||++|++||..+ +.+|+.++++++.+..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~----~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~ 642 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLS----DPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHS 642 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhccc----CCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhh
Confidence 45689999999988888765431100 01123 358999999999999999999876 4689999999886521
Q ss_pred ----hhcchH----HHHHHHHHH-HhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCC--CC------
Q 003476 406 ----VGMGAS----RVRDLFARA-KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF--DS------ 468 (816)
Q Consensus 406 ----vG~~~~----~vr~lF~~A-~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~--~~------ 468 (816)
.|.... .-...+..+ +....+||||||++.+.. .+.+.|+..++.- ..
T Consensus 643 ~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~---------------~v~~~Ll~ile~g~l~d~~gr~v 707 (857)
T PRK10865 643 VSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHP---------------DVFNILLQVLDDGRLTDGQGRTV 707 (857)
T ss_pred HHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCH---------------HHHHHHHHHHhhCceecCCceEE
Confidence 211100 001123333 333348999999987642 2345555555421 11
Q ss_pred -CCcEEEEEEcCCC-------------------------CCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhc
Q 003476 469 -NSAVIVLGATNRS-------------------------DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK 518 (816)
Q Consensus 469 -~~~ViVIaATN~p-------------------------d~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~ 518 (816)
-.+.+||+|||.. ..+.|+|+. |+|..+.+.+++.++..+|++.++.+
T Consensus 708 d~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 708 DFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred eecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 1346788999973 124467776 99999999999999999998888764
No 157
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.20 E-value=2e-10 Score=133.88 Aligned_cols=223 Identities=20% Similarity=0.189 Sum_probs=132.3
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-EEEe---echhhHHHHhh-
Q 003476 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-FISC---SASEFVELYVG- 407 (816)
Q Consensus 333 DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvp-fi~i---s~s~~~~~~vG- 407 (816)
+|.|++.+|..|.-.+---..+..-.....+...+|||+|+||||||.+||+++...... |... ++..+......
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~ 283 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRD 283 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEc
Confidence 588999987766433211110100001122334579999999999999999999977533 3321 22222110000
Q ss_pred --cchHHHH-HHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCC-----------CCCCcEE
Q 003476 408 --MGASRVR-DLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----------DSNSAVI 473 (816)
Q Consensus 408 --~~~~~vr-~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~-----------~~~~~Vi 473 (816)
.+...++ ..+..| ...+++|||+|.+.... ...|+..|+.- .-+..+.
T Consensus 284 ~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l~~~~---------------q~~L~e~me~~~i~i~k~G~~~~l~~~~~ 345 (509)
T smart00350 284 PETREFTLEGGALVLA---DNGVCCIDEFDKMDDSD---------------RTAIHEAMEQQTISIAKAGITTTLNARCS 345 (509)
T ss_pred cCcceEEecCccEEec---CCCEEEEechhhCCHHH---------------HHHHHHHHhcCEEEEEeCCEEEEecCCcE
Confidence 0000000 011122 23499999999985332 23333334321 1135688
Q ss_pred EEEEcCCCC-------------CCCcccCCCCcccceEEe-cCCCHHHHHHHHHHHHhcCC---------C--CC-----
Q 003476 474 VLGATNRSD-------------VLDPALRRPGRFDRVVMV-ETPDKIGREAILKVHVSKKE---------L--PL----- 523 (816)
Q Consensus 474 VIaATN~pd-------------~LDpALlRpGRFdr~I~v-~~Pd~~eR~~ILk~~l~~~~---------l--~l----- 523 (816)
||||+|..+ .|++++++ |||..+.+ +.|+.+...+|+++.+.... . .+
T Consensus 346 viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l 423 (509)
T smart00350 346 VLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFL 423 (509)
T ss_pred EEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHH
Confidence 999999752 68999999 99986554 68999999888887543210 0 00
Q ss_pred -----------ccccC---HHHHH-----hh----------CCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHH
Q 003476 524 -----------AKDID---LGDIA-----SM----------TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (816)
Q Consensus 524 -----------~~dvd---l~~LA-----~~----------t~G~SgaDL~~LvneAa~~A~r~~~~~It~~d~~~Al~r 574 (816)
.+.+. .+.+. .+ ..+.|++.+..+++-|...|..+.+..|+.+|+..|++-
T Consensus 424 ~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l 503 (509)
T smart00350 424 RKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRL 503 (509)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 00111 11111 11 235689999999999999999999999999999999865
Q ss_pred H
Q 003476 575 S 575 (816)
Q Consensus 575 ~ 575 (816)
+
T Consensus 504 ~ 504 (509)
T smart00350 504 L 504 (509)
T ss_pred H
Confidence 4
No 158
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.20 E-value=2.3e-10 Score=127.96 Aligned_cols=185 Identities=18% Similarity=0.159 Sum_probs=125.2
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE-------E-----
Q 003476 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------I----- 394 (816)
Q Consensus 327 ~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpf-------i----- 394 (816)
.+.+++||+|++++++.|.+.+.. .+.|..+||+||+|+||+++|.++|+.+-+.- .
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRS-----------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 467899999999999999877653 35677899999999999999999999763311 0
Q ss_pred ---EeechhhHH-----------HHh---hc--------chHHHHHHHHHHH----hcCCEEEEEcCccchhhccCCccc
Q 003476 395 ---SCSASEFVE-----------LYV---GM--------GASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFR 445 (816)
Q Consensus 395 ---~is~s~~~~-----------~~v---G~--------~~~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~ 445 (816)
.-.|..+.. ... +. ....+|++.+.+. ...|.|++|||+|.+..
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~------- 155 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA------- 155 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH-------
Confidence 001111110 000 11 1244666655443 34577999999998842
Q ss_pred cccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCcc
Q 003476 446 IVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAK 525 (816)
Q Consensus 446 ~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~ 525 (816)
...|.||..++. +..++++|.+|+.++.+.+.+++ |. +.+.+++|+.++..++|...... . .
T Consensus 156 --------~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~----~-~ 217 (365)
T PRK07471 156 --------NAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD----L-P 217 (365)
T ss_pred --------HHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc----C-C
Confidence 456888888873 44567778889999999998877 54 48999999999999888876421 1 1
Q ss_pred ccCHHHHHhhCCCCCHHHHHHHH
Q 003476 526 DIDLGDIASMTTGFTGADLANLV 548 (816)
Q Consensus 526 dvdl~~LA~~t~G~SgaDL~~Lv 548 (816)
+..+..++..+.| ++....+++
T Consensus 218 ~~~~~~l~~~s~G-sp~~Al~ll 239 (365)
T PRK07471 218 DDPRAALAALAEG-SVGRALRLA 239 (365)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHh
Confidence 1122456666666 555554444
No 159
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=3.1e-10 Score=135.35 Aligned_cols=209 Identities=24% Similarity=0.312 Sum_probs=147.1
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------CCcE
Q 003476 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPF 393 (816)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el----------gvpf 393 (816)
+....-.++-|+|.++..+.+.+++. .+..++-+|+|+||+|||.++..+|.+. +..+
T Consensus 162 ~~Ar~gklDPvIGRd~EI~r~iqIL~------------RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i 229 (786)
T COG0542 162 ELAREGKLDPVIGRDEEIRRTIQILS------------RRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRI 229 (786)
T ss_pred HHHhcCCCCCCcChHHHHHHHHHHHh------------ccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEE
Confidence 34456778999999986665555442 2334567999999999999999999864 5678
Q ss_pred EEeechhhHH--HHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCc
Q 003476 394 ISCSASEFVE--LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSA 471 (816)
Q Consensus 394 i~is~s~~~~--~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ 471 (816)
++++.+.++. .|-|+.+.+++.+.+...+..+.||||||||.+.+..... + + .-..-|-|.-.+. +..
T Consensus 230 ~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~---G--~-a~DAaNiLKPaLA----RGe 299 (786)
T COG0542 230 YSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATE---G--G-AMDAANLLKPALA----RGE 299 (786)
T ss_pred EEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccc---c--c-ccchhhhhHHHHh----cCC
Confidence 8888888875 6999999999999999998889999999999997553321 1 0 1122233333332 466
Q ss_pred EEEEEEcCCC-----CCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcC----CCCCccccCHHHHHh-----hCC
Q 003476 472 VIVLGATNRS-----DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK----ELPLAKDIDLGDIAS-----MTT 537 (816)
Q Consensus 472 ViVIaATN~p-----d~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~----~l~l~~dvdl~~LA~-----~t~ 537 (816)
+-+|+||... =.=|+||-| ||. .|.|..|+.++-..||+-.-.+. ++.+.+++ +..-+. .+.
T Consensus 300 L~~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~A-l~aAv~LS~RYI~d 375 (786)
T COG0542 300 LRCIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEA-LVAAVTLSDRYIPD 375 (786)
T ss_pred eEEEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHH-HHHHHHHHHhhccc
Confidence 8899999643 245899999 997 89999999999999998765543 22232221 222232 233
Q ss_pred CCCHHHHHHHHHHHHHHHHHh
Q 003476 538 GFTGADLANLVNEAALLAGRL 558 (816)
Q Consensus 538 G~SgaDL~~LvneAa~~A~r~ 558 (816)
.|=|.-.-.++.+|+......
T Consensus 376 R~LPDKAIDLiDeA~a~~~l~ 396 (786)
T COG0542 376 RFLPDKAIDLLDEAGARVRLE 396 (786)
T ss_pred CCCCchHHHHHHHHHHHHHhc
Confidence 444555668888887666543
No 160
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.19 E-value=1.4e-10 Score=137.34 Aligned_cols=104 Identities=24% Similarity=0.360 Sum_probs=68.4
Q ss_pred cEEEEEEcCCC--CCCCcccCCCCccc---ceEEec--CCC-HHHHHHHHHHH---HhcC-CCC-CccccCHHHHHh---
Q 003476 471 AVIVLGATNRS--DVLDPALRRPGRFD---RVVMVE--TPD-KIGREAILKVH---VSKK-ELP-LAKDIDLGDIAS--- 534 (816)
Q Consensus 471 ~ViVIaATN~p--d~LDpALlRpGRFd---r~I~v~--~Pd-~~eR~~ILk~~---l~~~-~l~-l~~dvdl~~LA~--- 534 (816)
.+.||+++|.. ..+||+|+. ||+ ..+.++ .|+ .+.+.++++.. +++. .++ ++++ .+..+.+
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~-Av~~Li~~~~ 344 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRD-AVEEIVREAQ 344 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHH-HHHHHHHHHH
Confidence 57899999975 578999998 998 556654 344 55555554433 3232 122 2222 1222221
Q ss_pred h------CCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHHc
Q 003476 535 M------TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIA 577 (816)
Q Consensus 535 ~------t~G~SgaDL~~LvneAa~~A~r~~~~~It~~d~~~Al~r~i~ 577 (816)
+ .-..+.++|.+++++|...|..+++..|+.+|+.+|++....
T Consensus 345 R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~~ 393 (608)
T TIGR00764 345 RRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAKT 393 (608)
T ss_pred HHHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHHH
Confidence 1 112357999999999988888888899999999999876543
No 161
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=9.5e-11 Score=139.59 Aligned_cols=164 Identities=27% Similarity=0.389 Sum_probs=117.7
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCC-eEEEEcCCCCcHHHHHHHHHHhcC---CcEEEeechhhHHH---
Q 003476 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPR-GVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEFVEL--- 404 (816)
Q Consensus 332 ~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pk-GVLL~GPPGTGKT~LAkALA~elg---vpfi~is~s~~~~~--- 404 (816)
..|+|++++.+.+.+.+..-+..-. .-+.|. ..||.||+|+|||.|||+||..+. ..++.+++|+|.+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~----dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsV 566 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLG----DPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSV 566 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCC----CCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHH
Confidence 4699999999988887765321100 012243 477899999999999999999996 89999999999883
Q ss_pred ---------HhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCC---C---
Q 003476 405 ---------YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS---N--- 469 (816)
Q Consensus 405 ---------~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~---~--- 469 (816)
|+|-.+. -.+-+..+....|||++|||+.-.+ .++|-||+.||.-.- .
T Consensus 567 SrLIGaPPGYVGyeeG--G~LTEaVRr~PySViLlDEIEKAHp---------------dV~nilLQVlDdGrLTD~~Gr~ 629 (786)
T COG0542 567 SRLIGAPPGYVGYEEG--GQLTEAVRRKPYSVILLDEIEKAHP---------------DVFNLLLQVLDDGRLTDGQGRT 629 (786)
T ss_pred HHHhCCCCCCceeccc--cchhHhhhcCCCeEEEechhhhcCH---------------HHHHHHHHHhcCCeeecCCCCE
Confidence 4443321 2333444555568999999987532 478888888874321 1
Q ss_pred ---CcEEEEEEcCCC----------------------------CCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhc
Q 003476 470 ---SAVIVLGATNRS----------------------------DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK 518 (816)
Q Consensus 470 ---~~ViVIaATN~p----------------------------d~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~ 518 (816)
.+.+||+|||-- ....|+++. |+|.+|.|.+.+.+...+|+..++.+
T Consensus 630 VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 630 VDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred EecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHHH
Confidence 357999999852 012455565 89999999999999999998887764
No 162
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.16 E-value=1.2e-09 Score=113.78 Aligned_cols=195 Identities=23% Similarity=0.326 Sum_probs=135.5
Q ss_pred CCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhh
Q 003476 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (816)
Q Consensus 325 ~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~ 401 (816)
..+.+.+.|++|++.+|+.|.+-...+-. ..+..+|||+|..|||||+|+||+-++. +..++.++-.++
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl 124 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFAE--------GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL 124 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHHc--------CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHH
Confidence 44679999999999999988765544332 4567889999999999999999998876 677899988777
Q ss_pred HHHHhhcchHHHHHHHHHHHhc-CCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCC--CCCcEEEEEEc
Q 003476 402 VELYVGMGASRVRDLFARAKKE-APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--SNSAVIVLGAT 478 (816)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~--~~~~ViVIaAT 478 (816)
.. +..+++..+.. ..-|||+|++-- .. + +.....|-..|||-- ...+|+|.||+
T Consensus 125 ~~---------Lp~l~~~Lr~~~~kFIlFcDDLSF---------e~--g---d~~yK~LKs~LeG~ve~rP~NVl~YATS 181 (287)
T COG2607 125 AT---------LPDLVELLRARPEKFILFCDDLSF---------EE--G---DDAYKALKSALEGGVEGRPANVLFYATS 181 (287)
T ss_pred hh---------HHHHHHHHhcCCceEEEEecCCCC---------CC--C---chHHHHHHHHhcCCcccCCCeEEEEEec
Confidence 54 44566666543 346999998621 01 1 123345555666542 24689999999
Q ss_pred CCCCCCCcc--------------------cCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccc-cCHHHH--Hhh
Q 003476 479 NRSDVLDPA--------------------LRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKD-IDLGDI--ASM 535 (816)
Q Consensus 479 N~pd~LDpA--------------------LlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~d-vdl~~L--A~~ 535 (816)
|+-..|... +--+-||...+.|.+++.++-..|+..++++.+++++++ .+.+.+ |..
T Consensus 182 NRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~ 261 (287)
T COG2607 182 NRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATT 261 (287)
T ss_pred CCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 986544321 112359999999999999999999999998877765432 222222 334
Q ss_pred CCCCCHHHHHHHHHH
Q 003476 536 TTGFTGADLANLVNE 550 (816)
Q Consensus 536 t~G~SgaDL~~Lvne 550 (816)
-.|-||+-..+.++.
T Consensus 262 rg~RSGR~A~QF~~~ 276 (287)
T COG2607 262 RGGRSGRVAWQFIRD 276 (287)
T ss_pred cCCCccHhHHHHHHH
Confidence 455666666555554
No 163
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.15 E-value=1.1e-09 Score=116.44 Aligned_cols=101 Identities=21% Similarity=0.222 Sum_probs=75.1
Q ss_pred EEEEEEcCC-------------CCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCC
Q 003476 472 VIVLGATNR-------------SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG 538 (816)
Q Consensus 472 ViVIaATN~-------------pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G 538 (816)
-+||.|||+ |.-+++.|+. |+ ..|..-+.+.++.++|++...+..++.+.++ .+..++.....
T Consensus 326 PivifAsNrG~~~irGt~d~~sPhGip~dllD--Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~-a~~~l~~~gt~ 401 (456)
T KOG1942|consen 326 PIVIFASNRGMCTIRGTEDILSPHGIPPDLLD--RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEE-ALDLLAEIGTS 401 (456)
T ss_pred ceEEEecCCcceeecCCcCCCCCCCCCHHHhh--he-eEEeeccCCHHHHHHHHHHHHhhhcceecHH-HHHHHHhhccc
Confidence 477778886 4556677765 43 2455557888999999999998888776554 46677776665
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHH
Q 003476 539 FTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSI 576 (816)
Q Consensus 539 ~SgaDL~~LvneAa~~A~r~~~~~It~~d~~~Al~r~i 576 (816)
-|-+-.-+++.-|.+.|...++..|..+|++++-+-.+
T Consensus 402 tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~Lf~ 439 (456)
T KOG1942|consen 402 TSLRYAVQLLTPASILAKTNGRKEISVEDVEEVTELFL 439 (456)
T ss_pred hhHHHHHHhcCHHHHHHHHcCCceeecccHHHHHHHHH
Confidence 66677777777888999999999999999988765443
No 164
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.15 E-value=9.7e-10 Score=125.68 Aligned_cols=214 Identities=17% Similarity=0.147 Sum_probs=124.9
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC--cEEEeechh-hHHHHhhcc
Q 003476 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASE-FVELYVGMG 409 (816)
Q Consensus 333 DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgv--pfi~is~s~-~~~~~vG~~ 409 (816)
.|+|.+++.+.+..++ ....+|||+||||||||++|++++..++. +|....+.- ......|..
T Consensus 21 ~i~gre~vI~lll~aa--------------lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l 86 (498)
T PRK13531 21 GLYERSHAIRLCLLAA--------------LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 86 (498)
T ss_pred hccCcHHHHHHHHHHH--------------ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH
Confidence 4777777666554432 22346999999999999999999997643 555444321 111222211
Q ss_pred -hHHH--HHHHHHHHhc---CCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCC--------CCCcEEEE
Q 003476 410 -ASRV--RDLFARAKKE---APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------SNSAVIVL 475 (816)
Q Consensus 410 -~~~v--r~lF~~A~~~---aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~--------~~~~ViVI 475 (816)
.... ..-|...... ...+||+|||..+.+ .+.+.||..|+.-. .-...+++
T Consensus 87 ~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp---------------~~QsaLLeam~Er~~t~g~~~~~lp~rfiv 151 (498)
T PRK13531 87 SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGP---------------AILNTLLTAINERRFRNGAHEEKIPMRLLV 151 (498)
T ss_pred HHhhhhhcCchhhhcCCccccccEEeecccccCCH---------------HHHHHHHHHHHhCeEecCCeEEeCCCcEEE
Confidence 0000 1122221111 223999999986543 34466666663111 01123555
Q ss_pred EEcCCCC---CCCcccCCCCcccceEEecCCC-HHHHHHHHHHHHhcCCCCCc--cccC--------------------H
Q 003476 476 GATNRSD---VLDPALRRPGRFDRVVMVETPD-KIGREAILKVHVSKKELPLA--KDID--------------------L 529 (816)
Q Consensus 476 aATN~pd---~LDpALlRpGRFdr~I~v~~Pd-~~eR~~ILk~~l~~~~l~l~--~dvd--------------------l 529 (816)
+|||... ...+++.. ||-..+.+++|+ .++..+||.........+.. .-+. .
T Consensus 152 ~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~ 229 (498)
T PRK13531 152 TASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVF 229 (498)
T ss_pred EECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHH
Confidence 5667432 23358887 998889999997 45557788764321111110 0011 1
Q ss_pred H---HHHhh---C---CCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHHcc
Q 003476 530 G---DIASM---T---TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAG 578 (816)
Q Consensus 530 ~---~LA~~---t---~G~SgaDL~~LvneAa~~A~r~~~~~It~~d~~~Al~r~i~g 578 (816)
+ .|... + ...|++-...+++-|...|...|+..|+.+|+. .+..+++.
T Consensus 230 eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~H 286 (498)
T PRK13531 230 ELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWH 286 (498)
T ss_pred HHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhcc
Confidence 1 12221 2 237889999999999999999999999999999 66666554
No 165
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.14 E-value=1.3e-10 Score=135.41 Aligned_cols=200 Identities=23% Similarity=0.340 Sum_probs=123.8
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHh-----------cCCcEEEee
Q 003476 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE-----------AEVPFISCS 397 (816)
Q Consensus 329 vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~e-----------lgvpfi~is 397 (816)
.+|+|++|.+.+.+.+.+.+..+.. .+..|||+|++||||+++|++|... .+.||+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~----------s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYAR----------SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 5699999999988888877654332 2446999999999999999999876 467999999
Q ss_pred chhhHHH-----Hhhcc------h--HHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhcc
Q 003476 398 ASEFVEL-----YVGMG------A--SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD 464 (816)
Q Consensus 398 ~s~~~~~-----~vG~~------~--~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emD 464 (816)
|+.+.+. ..|.. + ..-..+|+.|.. ..||||||+.+....+ ..|-.+|.+-.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~~~Q------------~kLl~~L~e~~ 350 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG---GTLFLDEIGEMPLPLQ------------TRLLRVLEEKE 350 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccCC---CEEEEcChHhCCHHHH------------HHHHhhhhcCe
Confidence 9876432 12211 0 011235555543 4899999999875432 11222332211
Q ss_pred --CCCC----CCcEEEEEEcCCCCCCCcccCCCCcccc-------eEEecCCCHHHHH----HHHHHHHhc----CCCCC
Q 003476 465 --GFDS----NSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGRE----AILKVHVSK----KELPL 523 (816)
Q Consensus 465 --g~~~----~~~ViVIaATN~pd~LDpALlRpGRFdr-------~I~v~~Pd~~eR~----~ILk~~l~~----~~l~l 523 (816)
.... ...+.+|++||.. |. .+...|+|.. .+.+..|...+|. .+++.++++ .+.++
T Consensus 351 ~~r~G~~~~~~~dvRiIaat~~~--L~-~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~ 427 (538)
T PRK15424 351 VTRVGGHQPVPVDVRVISATHCD--LE-EDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPF 427 (538)
T ss_pred EEecCCCceeccceEEEEecCCC--HH-HHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCC
Confidence 0111 2346899999864 21 2223344432 4677888888775 344555543 33344
Q ss_pred ccccC------HHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 003476 524 AKDID------LGDIASMTTGFTGADLANLVNEAALLAG 556 (816)
Q Consensus 524 ~~dvd------l~~LA~~t~G~SgaDL~~LvneAa~~A~ 556 (816)
.+++- +..|.....-.+.++|+|++.+++..+.
T Consensus 428 ~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~ 466 (538)
T PRK15424 428 SAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLS 466 (538)
T ss_pred CHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcC
Confidence 33321 1344555555578999999999887653
No 166
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.14 E-value=4.5e-10 Score=122.91 Aligned_cols=174 Identities=16% Similarity=0.283 Sum_probs=117.1
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHH--h
Q 003476 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY--V 406 (816)
Q Consensus 329 vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~~--v 406 (816)
.+|+||+|++.+++.|...+.. .+.|+.+||+||+|+|||++|+++|..+.+....-+..++.... .
T Consensus 1 m~~~~i~g~~~~~~~l~~~~~~-----------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 1 MSFHTIIGHENIKNRIKNSIIK-----------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred CChhhccCcHHHHHHHHHHHHc-----------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 3699999999999988877632 45677799999999999999999999764321110111111100 1
Q ss_pred h--cchHHHHHHHHHHHh----cCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCC
Q 003476 407 G--MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (816)
Q Consensus 407 G--~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~ 480 (816)
| -+...+|++.+.+.. ....|++|||+|.+.. ...|.||..++. +..++++|.+|+.
T Consensus 70 ~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~---------------~a~naLLK~LEe--pp~~t~~il~~~~ 132 (313)
T PRK05564 70 KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE---------------QAQNAFLKTIEE--PPKGVFIILLCEN 132 (313)
T ss_pred CCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCH---------------HHHHHHHHHhcC--CCCCeEEEEEeCC
Confidence 1 123457777665432 2345999999988742 345889999984 4456677777788
Q ss_pred CCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCC
Q 003476 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG 538 (816)
Q Consensus 481 pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G 538 (816)
++.|-|++++ |. ..+.+..|+.++....+...+.. +. +..+..++..+.|
T Consensus 133 ~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~----~~-~~~~~~l~~~~~g 182 (313)
T PRK05564 133 LEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND----IK-EEEKKSAIAFSDG 182 (313)
T ss_pred hHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC----CC-HHHHHHHHHHcCC
Confidence 8999999988 53 48999999999988777665421 11 1224455666655
No 167
>PHA02244 ATPase-like protein
Probab=99.13 E-value=1.5e-09 Score=120.57 Aligned_cols=150 Identities=23% Similarity=0.297 Sum_probs=93.4
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHH--h
Q 003476 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY--V 406 (816)
Q Consensus 329 vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~~--v 406 (816)
+.+.-+.+....+.....+..++.. ..+|||+||||||||+||+++|..+++||+.++.. .+.+ .
T Consensus 94 ~d~~~ig~sp~~~~~~~ri~r~l~~-----------~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l--~d~~~L~ 160 (383)
T PHA02244 94 IDTTKIASNPTFHYETADIAKIVNA-----------NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI--MDEFELK 160 (383)
T ss_pred CCCcccCCCHHHHHHHHHHHHHHhc-----------CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC--hHHHhhc
Confidence 3344444444444555555444433 34599999999999999999999999999998842 2211 1
Q ss_pred ---hcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhh-----ccC-CCCCCcEEEEEE
Q 003476 407 ---GMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE-----MDG-FDSNSAVIVLGA 477 (816)
Q Consensus 407 ---G~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e-----mDg-~~~~~~ViVIaA 477 (816)
.....-...-|-.|.. ..++|+|||++.+.+.. ...|+.++.. .++ +....++.+|+|
T Consensus 161 G~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a~p~v------------q~~L~~lLd~r~l~l~g~~i~~h~~FRlIAT 227 (383)
T PHA02244 161 GFIDANGKFHETPFYEAFK-KGGLFFIDEIDASIPEA------------LIIINSAIANKFFDFADERVTAHEDFRVISA 227 (383)
T ss_pred ccccccccccchHHHHHhh-cCCEEEEeCcCcCCHHH------------HHHHHHHhccCeEEecCcEEecCCCEEEEEe
Confidence 1111111112333332 35699999999875332 2234444431 111 123467899999
Q ss_pred cCCC-----------CCCCcccCCCCcccceEEecCCCHHH
Q 003476 478 TNRS-----------DVLDPALRRPGRFDRVVMVETPDKIG 507 (816)
Q Consensus 478 TN~p-----------d~LDpALlRpGRFdr~I~v~~Pd~~e 507 (816)
+|.+ ..|+++++. ||- .|.++.|+..|
T Consensus 228 sN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp~~~E 265 (383)
T PHA02244 228 GNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYDEKIE 265 (383)
T ss_pred eCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCCcHHH
Confidence 9973 578999998 995 79999998433
No 168
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.13 E-value=1.9e-10 Score=134.12 Aligned_cols=213 Identities=21% Similarity=0.290 Sum_probs=128.8
Q ss_pred ccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHh---cCCcEEEeechhhHHH
Q 003476 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASEFVEL 404 (816)
Q Consensus 328 ~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~e---lgvpfi~is~s~~~~~ 404 (816)
..+|+|++|...+.+.+.+.+..+.. .+..|||+|++||||+++|+++... .+.||+.++|..+.+.
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A~----------~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYAR----------SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 36799999999988888777655332 3456999999999999999999865 4679999999866432
Q ss_pred -----Hhhcch--------HHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhcc--CCCC-
Q 003476 405 -----YVGMGA--------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD--GFDS- 468 (816)
Q Consensus 405 -----~vG~~~--------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emD--g~~~- 468 (816)
..|... ..-..+|+.|.. ..|||||||.+....+ .-|-.+|.+-. ....
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~~~Q------------~~Ll~~L~~~~~~r~g~~ 342 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEMPLPLQ------------TRLLRVLEEREVVRVGGT 342 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcCC---ceEEecChHhCCHHHH------------HHHHHHHhcCcEEecCCC
Confidence 122110 012345555543 4899999999865432 12222333211 1111
Q ss_pred ---CCcEEEEEEcCCCCCCCcccCCCCcccc-------eEEecCCCHHHHHH----HHHHHHhc----CCCCCccccCHH
Q 003476 469 ---NSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGREA----ILKVHVSK----KELPLAKDIDLG 530 (816)
Q Consensus 469 ---~~~ViVIaATN~pd~LDpALlRpGRFdr-------~I~v~~Pd~~eR~~----ILk~~l~~----~~l~l~~dvdl~ 530 (816)
...+.+|++||..- . .+...|+|.. .+.+..|...+|.+ ++..++.+ .++++.++. +.
T Consensus 343 ~~~~~dvRiIaat~~~l--~-~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a-~~ 418 (526)
T TIGR02329 343 EPVPVDVRVVAATHCAL--T-TAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAA-AQ 418 (526)
T ss_pred ceeeecceEEeccCCCH--H-HHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHH-HH
Confidence 12467889987641 1 1122233332 46778888877753 34444443 223333221 22
Q ss_pred H-------HHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHH
Q 003476 531 D-------IASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI 569 (816)
Q Consensus 531 ~-------LA~~t~G~SgaDL~~LvneAa~~A~r~~~~~It~~d~~ 569 (816)
. |.....-.+-++|++++.+++..+.......|+.+++.
T Consensus 419 ~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~ 464 (526)
T TIGR02329 419 VLAGVADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLR 464 (526)
T ss_pred HhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhh
Confidence 2 55666666789999999998877642233466666644
No 169
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.12 E-value=6.2e-10 Score=131.79 Aligned_cols=257 Identities=12% Similarity=0.116 Sum_probs=143.0
Q ss_pred cccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEE-eech-
Q 003476 322 VSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS-CSAS- 399 (816)
Q Consensus 322 ~~~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~-is~s- 399 (816)
..+...+.+++||+|+++..++|+.++..... +..+.+.++|+||||||||++++.+|++++..++. .+..
T Consensus 74 W~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~-------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~ 146 (637)
T TIGR00602 74 WVEKYKPETQHELAVHKKKIEEVETWLKAQVL-------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTL 146 (637)
T ss_pred hHHHhCCCCHHHhcCcHHHHHHHHHHHHhccc-------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhh
Confidence 45667788999999999988887777654322 22344559999999999999999999998765433 1110
Q ss_pred --hh----------HHH--HhhcchHHHHHHHHHHHh----------cCCEEEEEcCccchhhccCCccccccchHHHHH
Q 003476 400 --EF----------VEL--YVGMGASRVRDLFARAKK----------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (816)
Q Consensus 400 --~~----------~~~--~vG~~~~~vr~lF~~A~~----------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 455 (816)
.. ... ........+++++..+.. ....||||||||.+... . ...
T Consensus 147 ~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-~-----------~~~ 214 (637)
T TIGR00602 147 PDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-D-----------TRA 214 (637)
T ss_pred hcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-h-----------HHH
Confidence 00 000 011223445555655542 24569999999987532 1 113
Q ss_pred HHHHHh-hccCCCCCCcEEEEEEcC-CCC--------------CCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcC
Q 003476 456 LNQLLT-EMDGFDSNSAVIVLGATN-RSD--------------VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK 519 (816)
Q Consensus 456 Ln~LL~-emDg~~~~~~ViVIaATN-~pd--------------~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~ 519 (816)
+..+|. ... ....+.+|++++ .+. .|.++++...|. .+|.|.+.......+.|+..+...
T Consensus 215 lq~lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E 290 (637)
T TIGR00602 215 LHEILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIE 290 (637)
T ss_pred HHHHHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhh
Confidence 344444 111 122333333333 111 134677743354 378999999999888888887754
Q ss_pred CCCCccc------cCHHHHHhhCCCCCHHHHHHHHHHHHHHHHH-------hCCccccHHHHHHHHHHHHc--chhhh-h
Q 003476 520 ELPLAKD------IDLGDIASMTTGFTGADLANLVNEAALLAGR-------LNKVVVEKIDFIHAVERSIA--GIEKK-T 583 (816)
Q Consensus 520 ~l~l~~d------vdl~~LA~~t~G~SgaDL~~LvneAa~~A~r-------~~~~~It~~d~~~Al~r~i~--g~e~k-~ 583 (816)
......+ -.+..|+.. +.+|++.+++.-...+.+ .+...++..+...+..+... ..++. .
T Consensus 291 ~~~~~~~~~~p~~~~l~~I~~~----s~GDiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~~k~~~~t~~e~~~l 366 (637)
T TIGR00602 291 AKKNGEKIKVPKKTSVELLCQG----CSGDIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSKIKGKHSSNNENQEI 366 (637)
T ss_pred hhccccccccCCHHHHHHHHHh----CCChHHHHHHHHHHHHhcCCccccccccccccHHHhhhccccCCCCCchhHHHH
Confidence 3222121 234555553 455888888876555432 22334554444444332210 00000 0
Q ss_pred hhhccchhhHHHhhhcccceee
Q 003476 584 AKLKGSEKAVVARHEAGHAVVG 605 (816)
Q Consensus 584 ~~l~~~ek~~iA~HEaGHAvv~ 605 (816)
..+...+.-+..+|-.|..+..
T Consensus 367 ~~~~~rd~sl~lfhalgkily~ 388 (637)
T TIGR00602 367 QALGGKDVSLFLFRALGKILYC 388 (637)
T ss_pred HhhccccchhHHHHHhChhhcc
Confidence 1122334455677777776643
No 170
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.11 E-value=1e-09 Score=120.51 Aligned_cols=183 Identities=15% Similarity=0.203 Sum_probs=123.9
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE----------EEeech
Q 003476 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF----------ISCSAS 399 (816)
Q Consensus 330 tf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpf----------i~is~s 399 (816)
.|+||+|++++++.|...+.. .+.|..+||+||+|+||+++|+++|..+-+.- ...+.+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 589999999999999988754 34567899999999999999999999763321 011111
Q ss_pred hhHH--------------HH---hh--------cchHHHHHHHHHHHh----cCCEEEEEcCccchhhccCCccccccch
Q 003476 400 EFVE--------------LY---VG--------MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSND 450 (816)
Q Consensus 400 ~~~~--------------~~---vG--------~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~ 450 (816)
++.- .+ .| -....+|++.+.+.. ....|++||++|.+..
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~------------ 138 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE------------ 138 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH------------
Confidence 1110 00 00 012356666555442 2346999999998852
Q ss_pred HHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHH
Q 003476 451 EREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLG 530 (816)
Q Consensus 451 e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~ 530 (816)
...|.||..|+... ..++|..|+.++.|-|++++ |. ..+.|++|+.++..++|+....... .+.++.
T Consensus 139 ---~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~----~~~~~~ 205 (314)
T PRK07399 139 ---AAANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEI----LNINFP 205 (314)
T ss_pred ---HHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhcccc----chhHHH
Confidence 34588999998543 34566777889999999988 63 5899999999999999987643211 122346
Q ss_pred HHHhhCCCCCHHHHHHHHH
Q 003476 531 DIASMTTGFTGADLANLVN 549 (816)
Q Consensus 531 ~LA~~t~G~SgaDL~~Lvn 549 (816)
.++....| +++...++++
T Consensus 206 ~l~~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 206 ELLALAQG-SPGAAIANIE 223 (314)
T ss_pred HHHHHcCC-CHHHHHHHHH
Confidence 67777766 6666655554
No 171
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.11 E-value=3.1e-09 Score=112.77 Aligned_cols=191 Identities=14% Similarity=0.201 Sum_probs=117.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCC-cEEE---e----echhhHHH---Hhhcc---h------HHHHHHH-HHHHhcC
Q 003476 366 RGVLLVGLPGTGKTLLAKAVAGEAEV-PFIS---C----SASEFVEL---YVGMG---A------SRVRDLF-ARAKKEA 424 (816)
Q Consensus 366 kGVLL~GPPGTGKT~LAkALA~elgv-pfi~---i----s~s~~~~~---~vG~~---~------~~vr~lF-~~A~~~a 424 (816)
..++|+||+|+|||++++.+++++.. .++. + +..++... ..|.. . ..+.+.+ .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 34889999999999999999998752 2221 1 11122211 11211 1 1122222 2233566
Q ss_pred CEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcC--CCCCCC-c---ccCCCCcccceE
Q 003476 425 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN--RSDVLD-P---ALRRPGRFDRVV 498 (816)
Q Consensus 425 P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN--~pd~LD-p---ALlRpGRFdr~I 498 (816)
+++|+|||+|.+... ....+..+..... .....+.|+.+.. ..+.+. + .+.+ |+...+
T Consensus 124 ~~vliiDe~~~l~~~------------~~~~l~~l~~~~~--~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~ 187 (269)
T TIGR03015 124 RALLVVDEAQNLTPE------------LLEELRMLSNFQT--DNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASC 187 (269)
T ss_pred CeEEEEECcccCCHH------------HHHHHHHHhCccc--CCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeee
Confidence 789999999987421 1122333322211 1122233333322 112221 1 2333 667788
Q ss_pred EecCCCHHHHHHHHHHHHhcCCC----CCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHH
Q 003476 499 MVETPDKIGREAILKVHVSKKEL----PLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (816)
Q Consensus 499 ~v~~Pd~~eR~~ILk~~l~~~~l----~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~~~~It~~d~~~Al~r 574 (816)
.+++.+.++..+++...+...+. .+.+ -.++.|.+.+.|. ++.|..+++.+...|..++...|+.+++..++..
T Consensus 188 ~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~-~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~ 265 (269)
T TIGR03015 188 HLGPLDREETREYIEHRLERAGNRDAPVFSE-GAFDAIHRFSRGI-PRLINILCDRLLLSAFLEEKREIGGEEVREVIAE 265 (269)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCCCCCCcCH-HHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 99999999999999988865332 2332 3577788999886 5679999999999999999999999999999865
No 172
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.11 E-value=1e-10 Score=120.39 Aligned_cols=143 Identities=27% Similarity=0.401 Sum_probs=69.8
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc--------------------
Q 003476 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------------------- 389 (816)
Q Consensus 330 tf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el-------------------- 389 (816)
.|+||+|++.+|..|.-... | ..++||+||||||||++|+++..-+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa-----------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA-----------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH-----------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred ChhhhcCcHHHHHHHHHHHc-----------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 38999999999998876542 2 3589999999999999999999743
Q ss_pred --------CCcEEEeechhhHHHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHh
Q 003476 390 --------EVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (816)
Q Consensus 390 --------gvpfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~ 461 (816)
..||.....+.-....+|.+....-..+..|.. .|||+||+-.+. ..+++.|+.
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~---GVLflDE~~ef~---------------~~vld~Lr~ 128 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHR---GVLFLDELNEFD---------------RSVLDALRQ 128 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTT---SEEEECETTTS----------------HHHHHHHHH
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcC---CEEEechhhhcC---------------HHHHHHHHH
Confidence 124444443332333344332212223333433 399999997653 356677777
Q ss_pred hccCCC-----------CCCcEEEEEEcCCC-----------------------CCCCcccCCCCcccceEEecCCCHH
Q 003476 462 EMDGFD-----------SNSAVIVLGATNRS-----------------------DVLDPALRRPGRFDRVVMVETPDKI 506 (816)
Q Consensus 462 emDg~~-----------~~~~ViVIaATN~p-----------------------d~LDpALlRpGRFdr~I~v~~Pd~~ 506 (816)
-|+.-. -..++++|+|+|.- ..|...|+. |||.++.++..+.+
T Consensus 129 ple~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 129 PLEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSYE 205 (206)
T ss_dssp HHHHSBEEEEETTEEEEEB--EEEEEEE-S-------------------------------------------------
T ss_pred HHHCCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--cccccccccccccC
Confidence 665211 12457999999862 234455555 67766666655443
No 173
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.09 E-value=2.1e-10 Score=134.38 Aligned_cols=209 Identities=23% Similarity=0.314 Sum_probs=127.5
Q ss_pred CCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhH
Q 003476 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 402 (816)
Q Consensus 326 ~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~ 402 (816)
.+..+|++++|.+.+.+++.+.+..+.. ....|||+|++|||||++|++|.... +.||+.++|..+.
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVAR----------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 4557899999999988887776665432 34469999999999999999998764 5799999998764
Q ss_pred HHH-----hhcchH-------HHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccC--CC-
Q 003476 403 ELY-----VGMGAS-------RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG--FD- 467 (816)
Q Consensus 403 ~~~-----vG~~~~-------~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg--~~- 467 (816)
+.. .|.... .....|+.| ...+|||||||.+....+ ..|+..++. +.
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~~~~Q---------------~~Ll~~l~~~~~~~ 321 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEISPAFQ---------------AKLLRVLQEGEFER 321 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCCHHHH---------------HHHHHHHhcCcEEE
Confidence 321 121100 001123333 345999999999864432 223333321 11
Q ss_pred --C----CCcEEEEEEcCCCCCCCcccCCCCcccc-------eEEecCCCHHHH----HHHHHHHHhcC----C--CCCc
Q 003476 468 --S----NSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGR----EAILKVHVSKK----E--LPLA 524 (816)
Q Consensus 468 --~----~~~ViVIaATN~pd~LDpALlRpGRFdr-------~I~v~~Pd~~eR----~~ILk~~l~~~----~--l~l~ 524 (816)
. ...+.+|++|+.. +.. +...|+|.. .+.+..|...+| ..+++.++.+. + ..+.
T Consensus 322 ~~~~~~~~~~~riI~~s~~~--l~~-~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s 398 (534)
T TIGR01817 322 VGGNRTLKVDVRLVAATNRD--LEE-AVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTIT 398 (534)
T ss_pred CCCCceEeecEEEEEeCCCC--HHH-HHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCC
Confidence 0 1247888988764 111 222334421 455666666555 34555555431 1 2222
Q ss_pred cccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHH
Q 003476 525 KDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI 569 (816)
Q Consensus 525 ~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~~~~It~~d~~ 569 (816)
++ .+..|......-+.++|+++++.|+..+ ....|+.+|+.
T Consensus 399 ~~-a~~~L~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~ 439 (534)
T TIGR01817 399 PS-AIRVLMSCKWPGNVRELENCLERTATLS---RSGTITRSDFS 439 (534)
T ss_pred HH-HHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 22 2556667766668899999999988665 34567777654
No 174
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.09 E-value=1.3e-10 Score=111.42 Aligned_cols=113 Identities=34% Similarity=0.398 Sum_probs=68.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH--HHhhcchH------HHHHHHHHHHhcCCEEEEEcCccchhh
Q 003476 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE--LYVGMGAS------RVRDLFARAKKEAPSIIFIDEIDAVAK 438 (816)
Q Consensus 367 GVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~--~~vG~~~~------~vr~lF~~A~~~aP~ILfIDEIDaL~~ 438 (816)
+|||+||||||||+||+.+|..++.+++.++++...+ ...|.-.- .....+..+.. .++|++||||+....
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a~~ 79 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRAPP 79 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG--H
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccCCH
Confidence 5899999999999999999999999999998876433 11111000 00000111111 578999999987642
Q ss_pred ccCCccccccchHHHHHHHHHHhhcc-----CC--C-CCC------cEEEEEEcCCCC----CCCcccCCCCcc
Q 003476 439 SRDGRFRIVSNDEREQTLNQLLTEMD-----GF--D-SNS------AVIVLGATNRSD----VLDPALRRPGRF 494 (816)
Q Consensus 439 ~r~~~~~~~~~~e~~~~Ln~LL~emD-----g~--~-~~~------~ViVIaATN~pd----~LDpALlRpGRF 494 (816)
+.-..++.++..-. +. . ... ++.+|+|+|..+ .++++|++ ||
T Consensus 80 ------------~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 80 ------------EVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp ------------HHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ------------HHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 22233344443311 00 0 011 489999999988 89999998 76
No 175
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.08 E-value=8.4e-10 Score=125.26 Aligned_cols=155 Identities=26% Similarity=0.427 Sum_probs=91.2
Q ss_pred cccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC-------cEEEee----ch
Q 003476 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISCS----AS 399 (816)
Q Consensus 331 f~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgv-------pfi~is----~s 399 (816)
++++.+.++..+.+.. .+.. .++++|+||||||||++|+++|..+.. .++.++ ..
T Consensus 174 l~d~~i~e~~le~l~~---~L~~-----------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILK---RLTI-----------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHH---HHhc-----------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 7788887776554433 3332 457999999999999999999987742 123332 23
Q ss_pred hhHHHHh--hcch----HHHHHHHHHHHhc--CCEEEEEcCccchhhccC-Ccc-ccccchHHHHHHHH--HHhh--ccC
Q 003476 400 EFVELYV--GMGA----SRVRDLFARAKKE--APSIIFIDEIDAVAKSRD-GRF-RIVSNDEREQTLNQ--LLTE--MDG 465 (816)
Q Consensus 400 ~~~~~~v--G~~~----~~vr~lF~~A~~~--aP~ILfIDEIDaL~~~r~-~~~-~~~~~~e~~~~Ln~--LL~e--mDg 465 (816)
+++..+. +.+. ..+.++...|+.. .|+|||||||+.....+- +.+ .....+.+.+.... ...+ .+.
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~ 319 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEER 319 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeecccccccc
Confidence 4443331 1121 1344555667653 589999999997543321 110 00011110000000 0011 123
Q ss_pred CCCCCcEEEEEEcCCCC----CCCcccCCCCcccceEEecC
Q 003476 466 FDSNSAVIVLGATNRSD----VLDPALRRPGRFDRVVMVET 502 (816)
Q Consensus 466 ~~~~~~ViVIaATN~pd----~LDpALlRpGRFdr~I~v~~ 502 (816)
+....++.||||+|..| .+|.||+| ||. .|.+.+
T Consensus 320 f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred ccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 55668899999999987 89999999 995 456654
No 176
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.07 E-value=1.4e-09 Score=125.77 Aligned_cols=210 Identities=24% Similarity=0.301 Sum_probs=130.1
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC------------------
Q 003476 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE------------------ 390 (816)
Q Consensus 329 vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elg------------------ 390 (816)
..|.++.|+..+++.+.- -......++|+||||+|||+|++.+++.+.
T Consensus 188 ~d~~~v~Gq~~~~~al~l--------------aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEI--------------TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhhe--------------eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 478999999887765422 123446799999999999999999987431
Q ss_pred ----------CcEEEeechhhHHHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHH
Q 003476 391 ----------VPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (816)
Q Consensus 391 ----------vpfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL 460 (816)
.||.....+--....+|.+...-...+..|... +|||||++.+.. .++..|+
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gG---vLfLDEi~e~~~---------------~~~~~L~ 315 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNG---VLFLDELPEFER---------------RTLDALR 315 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCC---EEecCCchhCCH---------------HHHHHHH
Confidence 122222111111123343322223456666554 999999987642 2334444
Q ss_pred hhccCCC-----------CCCcEEEEEEcCCCC---------------------CCCcccCCCCcccceEEecCCCHHH-
Q 003476 461 TEMDGFD-----------SNSAVIVLGATNRSD---------------------VLDPALRRPGRFDRVVMVETPDKIG- 507 (816)
Q Consensus 461 ~emDg~~-----------~~~~ViVIaATN~pd---------------------~LDpALlRpGRFdr~I~v~~Pd~~e- 507 (816)
+-|+.-. -..++.+|+|+|... .|..+++. |||.++.++.|+.++
T Consensus 316 ~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l 393 (506)
T PRK09862 316 EPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGIL 393 (506)
T ss_pred HHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHH
Confidence 4442111 135689999999752 46778888 999999999885321
Q ss_pred ---------HHHHHHHHH-------hcCCCCCccccC--------------HH--HHHhhCCCCCHHHHHHHHHHHHHHH
Q 003476 508 ---------REAILKVHV-------SKKELPLAKDID--------------LG--DIASMTTGFTGADLANLVNEAALLA 555 (816)
Q Consensus 508 ---------R~~ILk~~l-------~~~~l~l~~dvd--------------l~--~LA~~t~G~SgaDL~~LvneAa~~A 555 (816)
..+|-+... ...+ .+...+. .. .-+....|.|.+....+++-|...|
T Consensus 394 ~~~~~~~ess~~i~~rV~~ar~~q~~r~~-~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiA 472 (506)
T PRK09862 394 SKTVVPGESSATVKQRVMAARERQFKRQN-KLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIA 472 (506)
T ss_pred hcccCCCCChHHHHHHHhhHHHHHHHHHH-HHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 111211100 0000 0011111 00 1122445789999999999999999
Q ss_pred HHhCCccccHHHHHHHHH
Q 003476 556 GRLNKVVVEKIDFIHAVE 573 (816)
Q Consensus 556 ~r~~~~~It~~d~~~Al~ 573 (816)
..+++..|+.+|+.+|+.
T Consensus 473 DL~g~~~V~~~hv~eAl~ 490 (506)
T PRK09862 473 DIDQSDIITRQHLQEAVS 490 (506)
T ss_pred HHcCCCCCCHHHHHHHHH
Confidence 999999999999999985
No 177
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.07 E-value=1.4e-09 Score=110.10 Aligned_cols=144 Identities=18% Similarity=0.251 Sum_probs=98.3
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCCc------------------------EEEeechhhHHHHhhcchHHHHHHHH
Q 003476 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------------------FISCSASEFVELYVGMGASRVRDLFA 418 (816)
Q Consensus 363 ~~pkGVLL~GPPGTGKT~LAkALA~elgvp------------------------fi~is~s~~~~~~vG~~~~~vr~lF~ 418 (816)
+.|..+||+||+|+|||++|++++.++... +..+.... ...+...++++.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~-----~~~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG-----QSIKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc-----CcCCHHHHHHHHH
Confidence 567789999999999999999999987442 11111100 0112356666666
Q ss_pred HHHh----cCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcc
Q 003476 419 RAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRF 494 (816)
Q Consensus 419 ~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRF 494 (816)
.+.. ....||+|||+|.+.. ...+.||..|+.. ....++|.+||.++.+.+++.+ |+
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~~---------------~~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~i~s--r~ 147 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMNE---------------AAANALLKTLEEP--PPNTLFILITPSPEKLLPTIRS--RC 147 (188)
T ss_pred HHccCcccCCeEEEEEechhhhCH---------------HHHHHHHHHhcCC--CCCeEEEEEECChHhChHHHHh--hc
Confidence 6654 2346999999998853 2346788888753 3455666667777999999988 55
Q ss_pred cceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCC
Q 003476 495 DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG 538 (816)
Q Consensus 495 dr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G 538 (816)
..+.+.+|+.++..++++.+ + +.+ ..+..++..+.|
T Consensus 148 -~~~~~~~~~~~~~~~~l~~~----g--i~~-~~~~~i~~~~~g 183 (188)
T TIGR00678 148 -QVLPFPPLSEEALLQWLIRQ----G--ISE-EAAELLLALAGG 183 (188)
T ss_pred -EEeeCCCCCHHHHHHHHHHc----C--CCH-HHHHHHHHHcCC
Confidence 48999999999998888775 2 222 235566666654
No 178
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2.1e-10 Score=129.38 Aligned_cols=212 Identities=24% Similarity=0.299 Sum_probs=125.8
Q ss_pred ccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC-----------------
Q 003476 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE----------------- 390 (816)
Q Consensus 328 ~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elg----------------- 390 (816)
...|.||.|++.+|+.|.... ...+++||+||||||||+||+.+.+-+-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAA--------------AGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~ 240 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAA--------------AGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLA 240 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHH--------------hcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhc
Confidence 458999999999999987653 3456799999999999999999976321
Q ss_pred ------------CcEEEeechhhHHHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHH
Q 003476 391 ------------VPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQ 458 (816)
Q Consensus 391 ------------vpfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~ 458 (816)
.||..-..+.-....+|.+...--.-...|. -.|||+||+-.+- .++|+.
T Consensus 241 g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH---~GVLFLDElpef~---------------~~iLe~ 302 (490)
T COG0606 241 GDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAH---NGVLFLDELPEFK---------------RSILEA 302 (490)
T ss_pred ccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeec---CCEEEeeccchhh---------------HHHHHH
Confidence 1222211111111122222100001111222 2399999985542 367888
Q ss_pred HHhhccCCC-----------CCCcEEEEEEcCCC-----------------------CCCCcccCCCCcccceEEecCCC
Q 003476 459 LLTEMDGFD-----------SNSAVIVLGATNRS-----------------------DVLDPALRRPGRFDRVVMVETPD 504 (816)
Q Consensus 459 LL~emDg~~-----------~~~~ViVIaATN~p-----------------------d~LDpALlRpGRFdr~I~v~~Pd 504 (816)
|-+-|+.-. -..++.+|+|+|.. ..|...|++ |||..+.++.++
T Consensus 303 LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~ 380 (490)
T COG0606 303 LREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLS 380 (490)
T ss_pred HhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCC
Confidence 887776321 12357888888863 134445566 999999999877
Q ss_pred HHHH--------------HHHHHHH----HhcCCCCCccc----------------cCHHHHHhhCCCCCHHHHHHHHHH
Q 003476 505 KIGR--------------EAILKVH----VSKKELPLAKD----------------IDLGDIASMTTGFTGADLANLVNE 550 (816)
Q Consensus 505 ~~eR--------------~~ILk~~----l~~~~l~l~~d----------------vdl~~LA~~t~G~SgaDL~~Lvne 550 (816)
..++ ..+++.+ .+...+..... .++...+-..-++|.+....+++-
T Consensus 381 ~~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKv 460 (490)
T COG0606 381 AGELIRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKV 460 (490)
T ss_pred HHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 4433 1121111 01011000111 122223344556778888888888
Q ss_pred HHHHHHHhCCccccHHHHHHHHH
Q 003476 551 AALLAGRLNKVVVEKIDFIHAVE 573 (816)
Q Consensus 551 Aa~~A~r~~~~~It~~d~~~Al~ 573 (816)
|..+|-.++...|...|+.+|+.
T Consensus 461 arTiADL~g~~~i~~~hl~eAi~ 483 (490)
T COG0606 461 ARTIADLEGSEQIERSHLAEAIS 483 (490)
T ss_pred HhhhhcccCcchhhHHHHHHHHh
Confidence 88888888888888888888874
No 179
>PRK04132 replication factor C small subunit; Provisional
Probab=99.05 E-value=1.8e-09 Score=130.98 Aligned_cols=171 Identities=21% Similarity=0.227 Sum_probs=126.9
Q ss_pred EEEEc--CCCCcHHHHHHHHHHhc-----CCcEEEeechhhHHHHhhcchHHHHHHHHHHHhcC------CEEEEEcCcc
Q 003476 368 VLLVG--LPGTGKTLLAKAVAGEA-----EVPFISCSASEFVELYVGMGASRVRDLFARAKKEA------PSIIFIDEID 434 (816)
Q Consensus 368 VLL~G--PPGTGKT~LAkALA~el-----gvpfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~a------P~ILfIDEID 434 (816)
-+..| |++.|||++|+++|+++ +.+++.+++++.. +...+|++.+.+.... ..|+||||+|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r------gid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER------GINVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc------cHHHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 45668 99999999999999997 5689999998753 2345677666554322 2699999999
Q ss_pred chhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHH
Q 003476 435 AVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKV 514 (816)
Q Consensus 435 aL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~ 514 (816)
.+... ..|.|+..|+.+ ...+.+|++||.+..+.+++++ |. ..+.|++|+.++....|+.
T Consensus 641 ~Lt~~---------------AQnALLk~lEep--~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~ 700 (846)
T PRK04132 641 ALTQD---------------AQQALRRTMEMF--SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRY 700 (846)
T ss_pred cCCHH---------------HHHHHHHHhhCC--CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHH
Confidence 98632 347788888843 3568899999999999999988 64 5899999999999999998
Q ss_pred HHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHH
Q 003476 515 HVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (816)
Q Consensus 515 ~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~~~~It~~d~~~A 571 (816)
.+.+.++.++++ .+..++..+.| +.+...++++.++.. ...|+.+++...
T Consensus 701 I~~~Egi~i~~e-~L~~Ia~~s~G-DlR~AIn~Lq~~~~~-----~~~It~~~V~~~ 750 (846)
T PRK04132 701 IAENEGLELTEE-GLQAILYIAEG-DMRRAINILQAAAAL-----DDKITDENVFLV 750 (846)
T ss_pred HHHhcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHHHh-----cCCCCHHHHHHH
Confidence 888777665544 57888888887 556666666554422 134666655443
No 180
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.04 E-value=7.3e-09 Score=120.84 Aligned_cols=205 Identities=23% Similarity=0.348 Sum_probs=132.0
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChh------HHhhh-------------------CCCCCCeEEEEcCCCCc
Q 003476 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPD------KYIRL-------------------GARPPRGVLLVGLPGTG 377 (816)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~------~~~~l-------------------g~~~pkGVLL~GPPGTG 377 (816)
..+..+-.|.|+.|-+.+-..+.. |||.+. ++.++ +..+.+-+||+||||-|
T Consensus 262 Vdky~Pk~FtdLLsDe~tNR~~L~---WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlG 338 (877)
T KOG1969|consen 262 VDKYRPKKFTDLLSDEKTNRRMLG---WLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLG 338 (877)
T ss_pred ecccChhHHHHHhcchhHHHHHHH---HHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCC
Confidence 355677889999999887665443 333221 11111 11223558899999999
Q ss_pred HHHHHHHHHHhcCCcEEEeechhhHHHHhhcchHHHHHHHHHHH--------hcCCEEEEEcCccchhhccCCccccccc
Q 003476 378 KTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAK--------KEAPSIIFIDEIDAVAKSRDGRFRIVSN 449 (816)
Q Consensus 378 KT~LAkALA~elgvpfi~is~s~~~~~~vG~~~~~vr~lF~~A~--------~~aP~ILfIDEIDaL~~~r~~~~~~~~~ 449 (816)
||+||+.+|+.+|..++.|++|+-.. +..+++-+..|- ...|..|+|||||--.
T Consensus 339 KTTLAHViAkqaGYsVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~------------ 400 (877)
T KOG1969|consen 339 KTTLAHVIAKQAGYSVVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP------------ 400 (877)
T ss_pred hhHHHHHHHHhcCceEEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecccCCc------------
Confidence 99999999999999999999987543 223333333332 2468899999998532
Q ss_pred hHHHHHHHHHHhhcc-------CCCC---------CC---cEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHH
Q 003476 450 DEREQTLNQLLTEMD-------GFDS---------NS---AVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREA 510 (816)
Q Consensus 450 ~e~~~~Ln~LL~emD-------g~~~---------~~---~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ 510 (816)
...++.++..+. |-.. +. .--|||.||.. .-|||+----|...|.|.+|...-..+
T Consensus 401 ---~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ii~f~~p~~s~Lv~ 475 (877)
T KOG1969|consen 401 ---RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAEIIAFVPPSQSRLVE 475 (877)
T ss_pred ---HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceEEEEecCCChhHHHH
Confidence 123344444332 1110 00 13577778853 356663211377899999999988888
Q ss_pred HHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 003476 511 ILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (816)
Q Consensus 511 ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~ 558 (816)
-|+..+.+.++.. |...|...++ ++..||++.+|.-..+|.+.
T Consensus 476 RL~~IC~rE~mr~----d~~aL~~L~e-l~~~DIRsCINtLQfLa~~~ 518 (877)
T KOG1969|consen 476 RLNEICHRENMRA----DSKALNALCE-LTQNDIRSCINTLQFLASNV 518 (877)
T ss_pred HHHHHHhhhcCCC----CHHHHHHHHH-HhcchHHHHHHHHHHHHHhc
Confidence 8888888877643 4444444443 33459999999988877654
No 181
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.04 E-value=2e-09 Score=116.80 Aligned_cols=146 Identities=23% Similarity=0.331 Sum_probs=98.5
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC---------------------
Q 003476 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE--------------------- 390 (816)
Q Consensus 332 ~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elg--------------------- 390 (816)
++++|.+++...+...+..- .+.|..+||+||||||||++|.++|+++.
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~----------~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 1 DELVPWQEAVKRLLVQALES----------GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CCcccchhHHHHHHHHHHhc----------CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 36777777777666644321 14455799999999999999999999886
Q ss_pred ---CcEEEeechhhHHHHhhcchHHHHHHHHHHHhc----CCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhc
Q 003476 391 ---VPFISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM 463 (816)
Q Consensus 391 ---vpfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~em 463 (816)
-.++.++.++-...- .....++++-+..... ...||+|||+|.+.. ...|.++..|
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~---------------~A~nallk~l 133 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE---------------DAANALLKTL 133 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH---------------HHHHHHHHHh
Confidence 345555555432210 1234455554444322 346999999999864 3457888888
Q ss_pred cCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHH
Q 003476 464 DGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGRE 509 (816)
Q Consensus 464 Dg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~ 509 (816)
+ .+..+..+|.+||.+..+-+.+.+ |. ..+.|.+|+.....
T Consensus 134 E--ep~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i 174 (325)
T COG0470 134 E--EPPKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAI 174 (325)
T ss_pred c--cCCCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHH
Confidence 7 344567888899999999888887 42 36777775544444
No 182
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.04 E-value=2.3e-09 Score=126.90 Aligned_cols=189 Identities=20% Similarity=0.247 Sum_probs=125.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcC--CcEEEeechhhHHHHhhcchHHHHH------------HHHHHHhcCCEEEEEc
Q 003476 366 RGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVELYVGMGASRVRD------------LFARAKKEAPSIIFID 431 (816)
Q Consensus 366 kGVLL~GPPGTGKT~LAkALA~elg--vpfi~is~s~~~~~~vG~~~~~vr~------------lF~~A~~~aP~ILfID 431 (816)
.+|||.|+||||||++|++++..+. .||+.+......+..+|.- .+.. ++.+| ...+||||
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A---~~GvL~lD 91 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEA---PRGVLYVD 91 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeC---CCCcEecc
Confidence 3799999999999999999999775 4798887543333333321 1111 11111 22499999
Q ss_pred CccchhhccCCccccccchHHHHHHHHHHhhccCCC-----------CCCcEEEEEEcCCCC---CCCcccCCCCcccce
Q 003476 432 EIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------SNSAVIVLGATNRSD---VLDPALRRPGRFDRV 497 (816)
Q Consensus 432 EIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~-----------~~~~ViVIaATN~pd---~LDpALlRpGRFdr~ 497 (816)
||+.+... +.+.|+..|+.-. ....+.||+++|..+ .|.++|+. ||+.+
T Consensus 92 Ei~rl~~~---------------~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~ 154 (589)
T TIGR02031 92 MANLLDDG---------------LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALH 154 (589)
T ss_pred chhhCCHH---------------HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCe
Confidence 99998643 3345555554211 124688999999865 78899998 99988
Q ss_pred EEec-CCCHHHHHHHHHHHHhcC-----------------------CCCCccccCHHHHHhh--CCCCC-HHHHHHHHHH
Q 003476 498 VMVE-TPDKIGREAILKVHVSKK-----------------------ELPLAKDIDLGDIASM--TTGFT-GADLANLVNE 550 (816)
Q Consensus 498 I~v~-~Pd~~eR~~ILk~~l~~~-----------------------~l~l~~dvdl~~LA~~--t~G~S-gaDL~~Lvne 550 (816)
|.+. .|+.++|.+|++.++... .+.+.+++ ++.++.. ..|.+ .+....+++-
T Consensus 155 v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~-~~~l~~~~~~~gv~s~Ra~i~~~r~ 233 (589)
T TIGR02031 155 VSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQ-VKELVLTAASLGISGHRADLFAVRA 233 (589)
T ss_pred eecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHH-HHHHHHHHHHcCCCCccHHHHHHHH
Confidence 8776 467788999988765211 11222221 2223221 12333 4556677888
Q ss_pred HHHHHHHhCCccccHHHHHHHHHHHHc
Q 003476 551 AALLAGRLNKVVVEKIDFIHAVERSIA 577 (816)
Q Consensus 551 Aa~~A~r~~~~~It~~d~~~Al~r~i~ 577 (816)
|...|..+++..|+.+|+..|+.-++.
T Consensus 234 ArA~Aal~gr~~V~~~Dv~~a~~lvl~ 260 (589)
T TIGR02031 234 AKAHAALHGRTEVTEEDLKLAVELVLL 260 (589)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhh
Confidence 889999999999999999999988763
No 183
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.04 E-value=1.1e-09 Score=127.70 Aligned_cols=198 Identities=22% Similarity=0.297 Sum_probs=122.3
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH--
Q 003476 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-- 404 (816)
Q Consensus 330 tf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~~-- 404 (816)
++.+++|.....+.+.+.+..+.. .+..|||+|++||||+++|++|.... +.||+.++|..+.+.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~----------~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAA----------SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhC----------CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 688999999988888777765432 34579999999999999999998764 579999999876432
Q ss_pred ---Hhhcch-------HHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhcc--CCC----C
Q 003476 405 ---YVGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD--GFD----S 468 (816)
Q Consensus 405 ---~vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emD--g~~----~ 468 (816)
..|... ......|+.|. ...|||||||.+....+ .+ |-.++..-. ... .
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L~~~~Q-----------~~-Ll~~l~~~~~~~~g~~~~~ 319 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGELPLALQ-----------AK-LLRVLQYGEIQRVGSDRSL 319 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhCCHHHH-----------HH-HHHHHhcCCEeeCCCCcce
Confidence 122110 00112344443 34899999999864322 12 222232211 000 1
Q ss_pred CCcEEEEEEcCCCC-------CCCcccCCCCcccceEEecCCCHHHHHH----HHHHHHhc----CC---CCCccccCHH
Q 003476 469 NSAVIVLGATNRSD-------VLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVSK----KE---LPLAKDIDLG 530 (816)
Q Consensus 469 ~~~ViVIaATN~pd-------~LDpALlRpGRFdr~I~v~~Pd~~eR~~----ILk~~l~~----~~---l~l~~dvdl~ 530 (816)
...+.||++||..- .+.+.|.. |+. .+.|..|...+|.+ ++++++.+ .+ ..+.++ .+.
T Consensus 320 ~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~-a~~ 395 (509)
T PRK05022 320 RVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPA-AQA 395 (509)
T ss_pred ecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHH-HHH
Confidence 23578999998741 22223322 222 46678888877752 33333332 11 222222 256
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHHHH
Q 003476 531 DIASMTTGFTGADLANLVNEAALLAG 556 (816)
Q Consensus 531 ~LA~~t~G~SgaDL~~LvneAa~~A~ 556 (816)
.|.....-.+.++|+++++.|+..+.
T Consensus 396 ~L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 396 ALLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 66667766688999999999988774
No 184
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.03 E-value=5.7e-10 Score=125.08 Aligned_cols=198 Identities=26% Similarity=0.374 Sum_probs=127.1
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHh----cCCcEEEeechhhH
Q 003476 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE----AEVPFISCSASEFV 402 (816)
Q Consensus 327 ~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~e----lgvpfi~is~s~~~ 402 (816)
....+++++|.+..-+++++-+..+ ......||++|++||||+++|++|... .+-||+.++|+.+.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAY----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhh----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 4567999999998777777766552 223456999999999999999999643 46799999999876
Q ss_pred HH-------------HhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccC----
Q 003476 403 EL-------------YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG---- 465 (816)
Q Consensus 403 ~~-------------~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg---- 465 (816)
+. |.| ....-..+|++|... +||+|||+.+...-+ ..|+..||.
T Consensus 143 en~~~~eLFG~~kGaftG-a~~~k~Glfe~A~GG---tLfLDEI~~LP~~~Q---------------~kLl~~le~g~~~ 203 (403)
T COG1221 143 ENLQEAELFGHEKGAFTG-AQGGKAGLFEQANGG---TLFLDEIHRLPPEGQ---------------EKLLRVLEEGEYR 203 (403)
T ss_pred cCHHHHHHhccccceeec-ccCCcCchheecCCC---EEehhhhhhCCHhHH---------------HHHHHHHHcCceE
Confidence 52 222 223334567766554 999999999875422 233444432
Q ss_pred -C----CCCCcEEEEEEcCCC--CCCCc--ccCCCCcccceEEecCCCHHHHH----HH----HHHHHhcCCCCCcccc-
Q 003476 466 -F----DSNSAVIVLGATNRS--DVLDP--ALRRPGRFDRVVMVETPDKIGRE----AI----LKVHVSKKELPLAKDI- 527 (816)
Q Consensus 466 -~----~~~~~ViVIaATN~p--d~LDp--ALlRpGRFdr~I~v~~Pd~~eR~----~I----Lk~~l~~~~l~l~~dv- 527 (816)
. .....|.+|+|||.. +.+-. .|.+. |+ .+.|.+|+..+|. .+ ++.++++.+.++..+.
T Consensus 204 rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~--~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~ 280 (403)
T COG1221 204 RVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRR-LN--ILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSP 280 (403)
T ss_pred ecCCCCCcCCCceeeeccccCHHHHHHhhcchhhh-hc--CceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCH
Confidence 1 123568999999752 22222 44431 22 4567778887775 22 4444555555544433
Q ss_pred -CHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 003476 528 -DLGDIASMTTGFTGADLANLVNEAALLAG 556 (816)
Q Consensus 528 -dl~~LA~~t~G~SgaDL~~LvneAa~~A~ 556 (816)
.+..+-....--+.++|+|+|..++..+.
T Consensus 281 ~a~~~L~~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 281 EALRALLAYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHHhc
Confidence 23334444433378999999999988874
No 185
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.03 E-value=4.8e-10 Score=127.92 Aligned_cols=212 Identities=25% Similarity=0.361 Sum_probs=131.9
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH
Q 003476 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (816)
Q Consensus 327 ~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~ 403 (816)
...+|+||+|..++..++.+.+.. .++.+..|||.|.+||||.++|+++-+.. +-||+.++|..+-+
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKR----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHh----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 457899999999987777666543 24456679999999999999999998754 67999999986544
Q ss_pred H-------------HhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhh--ccCCCC
Q 003476 404 L-------------YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE--MDGFDS 468 (816)
Q Consensus 404 ~-------------~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e--mDg~~~ 468 (816)
. |.|....--..+|+.|... -||+|||..+...-|+ -|-..|++ +....+
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgempl~LQa------------KLLRVLQEkei~rvG~ 374 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEMPLPLQA------------KLLRVLQEKEIERVGG 374 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccCCHHHHH------------HHHHHHhhceEEecCC
Confidence 2 2222221134566666554 8999999888643321 22233333 111111
Q ss_pred ----CCcEEEEEEcCCCCCCCcccCCCCcccc-------eEEecCCCHHHHHH----HHHHHHhc----CC--CC-Cccc
Q 003476 469 ----NSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGREA----ILKVHVSK----KE--LP-LAKD 526 (816)
Q Consensus 469 ----~~~ViVIaATN~pd~LDpALlRpGRFdr-------~I~v~~Pd~~eR~~----ILk~~l~~----~~--l~-l~~d 526 (816)
.-.|-||||||+. |-. +..-|+|-. ++.+..|...+|.+ +...++.+ .+ ++ +.++
T Consensus 375 t~~~~vDVRIIAATN~n--L~~-~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~ 451 (560)
T COG3829 375 TKPIPVDVRIIAATNRN--LEK-MIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPD 451 (560)
T ss_pred CCceeeEEEEEeccCcC--HHH-HHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHH
Confidence 2458999999984 222 222344432 56677788877752 33333332 21 11 2222
Q ss_pred cCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHH
Q 003476 527 IDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI 569 (816)
Q Consensus 527 vdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~~~~It~~d~~ 569 (816)
.+..|.+...--+-++|+|++..+...+. ....|+..|+-
T Consensus 452 -a~~~L~~y~WPGNVRELeNviER~v~~~~--~~~~I~~~~lp 491 (560)
T COG3829 452 -ALALLLRYDWPGNVRELENVIERAVNLVE--SDGLIDADDLP 491 (560)
T ss_pred -HHHHHHhCCCCchHHHHHHHHHHHHhccC--Ccceeehhhcc
Confidence 24556666655578999999999887543 33345555544
No 186
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=6.1e-10 Score=119.58 Aligned_cols=126 Identities=36% Similarity=0.522 Sum_probs=86.8
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCC--------CCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH-
Q 003476 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGAR--------PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE- 403 (816)
Q Consensus 333 DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~--------~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~- 403 (816)
=|+|++.+|+.|.-.|-. .|+++... ...++||.||.|+|||+||+.+|+.+++||-..++..+.+
T Consensus 62 YVIGQe~AKKvLsVAVYN-----HYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEA 136 (408)
T COG1219 62 YVIGQEQAKKVLSVAVYN-----HYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEA 136 (408)
T ss_pred heecchhhhceeeeeehh-----HHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhc
Confidence 388999999877544321 23333221 1356999999999999999999999999999999998887
Q ss_pred HHhhcchHHH-HHHHHHHH----hcCCEEEEEcCccchhhccCCcc--ccccchHHHHHHHHHHhhccCC
Q 003476 404 LYVGMGASRV-RDLFARAK----KEAPSIIFIDEIDAVAKSRDGRF--RIVSNDEREQTLNQLLTEMDGF 466 (816)
Q Consensus 404 ~~vG~~~~~v-r~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~--~~~~~~e~~~~Ln~LL~emDg~ 466 (816)
.|+|+....+ ..++..|. +....||+|||||.+.++..+.. ...+. +.+-.+||..|+|-
T Consensus 137 GYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSG---EGVQQALLKiiEGT 203 (408)
T COG1219 137 GYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSG---EGVQQALLKIIEGT 203 (408)
T ss_pred cccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCc---hHHHHHHHHHHcCc
Confidence 5998876554 34443332 22345999999999998764431 11222 33445677777763
No 187
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.02 E-value=9.9e-10 Score=131.28 Aligned_cols=210 Identities=20% Similarity=0.281 Sum_probs=126.9
Q ss_pred ccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH-
Q 003476 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE- 403 (816)
Q Consensus 328 ~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~- 403 (816)
..+|++++|.+.+.+++.+.+..+. .....|||+|++||||+++|+++.... +.||+.++|..+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAA----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHh----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 4579999999987777666554432 223459999999999999999998764 57999999986532
Q ss_pred ----HHhhcc----hHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCC-----CC--
Q 003476 404 ----LYVGMG----ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----DS-- 468 (816)
Q Consensus 404 ----~~vG~~----~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~-----~~-- 468 (816)
...|.. .......|+.| ...+||||||+.+....+ ..|+..++.- ..
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~~~~Q---------------~~Ll~~l~~~~~~~~~~~~ 452 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLSPELQ---------------SALLQVLKTGVITRLDSRR 452 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCCHHHH---------------HHHHHHHhcCcEEeCCCCc
Confidence 222211 00011123333 345999999999864432 2233332211 11
Q ss_pred --CCcEEEEEEcCCCCCCCcccCCCCcccc-------eEEecCCCHHHHH----HHHHHHHhcC----C--CCCccccCH
Q 003476 469 --NSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGRE----AILKVHVSKK----E--LPLAKDIDL 529 (816)
Q Consensus 469 --~~~ViVIaATN~pd~LDpALlRpGRFdr-------~I~v~~Pd~~eR~----~ILk~~l~~~----~--l~l~~dvdl 529 (816)
.-.+.||+|||..- ..+...|+|.. .+.+..|...+|. .+++.++.+. + +.+.++ .+
T Consensus 453 ~~~~~~riI~~t~~~l---~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~-a~ 528 (638)
T PRK11388 453 LIPVDVRVIATTTADL---AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDD-AL 528 (638)
T ss_pred eEEeeEEEEEeccCCH---HHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHH-HH
Confidence 12578999998641 12222334421 5678888888884 2344444321 1 222322 35
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003476 530 GDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (816)
Q Consensus 530 ~~LA~~t~G~SgaDL~~LvneAa~~A~r~~~~~It~~d~~~Al 572 (816)
..|......-+.++|+++++.|...+ ....|+.+|+...+
T Consensus 529 ~~L~~y~WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~~ 568 (638)
T PRK11388 529 ARLVSYRWPGNDFELRSVIENLALSS---DNGRIRLSDLPEHL 568 (638)
T ss_pred HHHHcCCCCChHHHHHHHHHHHHHhC---CCCeecHHHCchhh
Confidence 66667775668899999999887654 34467766654443
No 188
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.02 E-value=1.8e-09 Score=119.07 Aligned_cols=195 Identities=22% Similarity=0.260 Sum_probs=118.8
Q ss_pred cccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH----
Q 003476 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE---- 403 (816)
Q Consensus 331 f~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~---- 403 (816)
+++++|.+...+.+.+.+..+. ..+..|||+|++||||+++|+++.... +.||+.++|..+.+
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~ 74 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLD 74 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHH
Confidence 6789999988887777665543 234569999999999999999997654 57999999987632
Q ss_pred -HHhhcch-------HHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCC-------C
Q 003476 404 -LYVGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-------S 468 (816)
Q Consensus 404 -~~vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~-------~ 468 (816)
...|... ......|..|. ...|||||||.+....+ ..+-.++..-. +. .
T Consensus 75 ~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~l~~i~~L~~~~Q------------~~L~~~l~~~~-~~~~g~~~~~ 138 (326)
T PRK11608 75 SELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATAPMLVQ------------EKLLRVIEYGE-LERVGGSQPL 138 (326)
T ss_pred HHHccccccccCCcccccCCchhccC---CCeEEeCChhhCCHHHH------------HHHHHHHhcCc-EEeCCCCcee
Confidence 1222110 01123344443 35899999999864322 12222332210 11 1
Q ss_pred CCcEEEEEEcCCC-------CCCCcccCCCCcccceEEecCCCHHHHH----HHHHHHHhc----CCCC----CccccCH
Q 003476 469 NSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGRE----AILKVHVSK----KELP----LAKDIDL 529 (816)
Q Consensus 469 ~~~ViVIaATN~p-------d~LDpALlRpGRFdr~I~v~~Pd~~eR~----~ILk~~l~~----~~l~----l~~dvdl 529 (816)
...+.||++|+.. ..+.+.|.. ||. .+.|..|...+|. .++.+++.. .+.+ +.++ .+
T Consensus 139 ~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~-al 214 (326)
T PRK11608 139 QVNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTER-AR 214 (326)
T ss_pred eccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHH-HH
Confidence 1357888888763 234455554 553 4567777777774 344444322 2222 2222 25
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHHH
Q 003476 530 GDIASMTTGFTGADLANLVNEAALLA 555 (816)
Q Consensus 530 ~~LA~~t~G~SgaDL~~LvneAa~~A 555 (816)
..|.....--+.++|+++++.|+..+
T Consensus 215 ~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 215 ETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 55666666667899999999887654
No 189
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.02 E-value=1.4e-09 Score=126.99 Aligned_cols=210 Identities=20% Similarity=0.250 Sum_probs=123.7
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH
Q 003476 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (816)
Q Consensus 327 ~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~ 403 (816)
...+|++++|.+...+.+.+.+..+. .....|||+|++||||+++|+++.... +.||+.++|+.+.+
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A----------~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLA----------MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 45789999999987666655544322 123459999999999999999986543 47999999987643
Q ss_pred H-----Hhhcch-------HHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhc--cCC---
Q 003476 404 L-----YVGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM--DGF--- 466 (816)
Q Consensus 404 ~-----~vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~em--Dg~--- 466 (816)
. ..|... .....+|+.|. ...|||||||.+....+ ..+-.++..- ...
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~~~~Q------------~~Ll~~l~~~~~~~~g~~ 333 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMSPRMQ------------AKLLRFLNDGTFRRVGED 333 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhCCHHHH------------HHHHHHHhcCCcccCCCC
Confidence 1 122111 11123455553 34899999999864432 2222333321 001
Q ss_pred -CCCCcEEEEEEcCCC-------CCCCcccCCCCcccceEEecCCCHHHHHH----HHHHH----HhcCCC---CCcccc
Q 003476 467 -DSNSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGREA----ILKVH----VSKKEL---PLAKDI 527 (816)
Q Consensus 467 -~~~~~ViVIaATN~p-------d~LDpALlRpGRFdr~I~v~~Pd~~eR~~----ILk~~----l~~~~l---~l~~dv 527 (816)
.....+.||++|+.+ ..+.+.|.. |+. .+.+..|...+|.+ ++..+ ..+.+. .+.++
T Consensus 334 ~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~- 409 (520)
T PRK10820 334 HEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAAD- 409 (520)
T ss_pred cceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHH-
Confidence 112357888888764 123333433 443 47788888877762 22333 333322 12222
Q ss_pred CHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHH
Q 003476 528 DLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDF 568 (816)
Q Consensus 528 dl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~~~~It~~d~ 568 (816)
.+..|......-+.++|++++..|...+ ....|+.+|+
T Consensus 410 a~~~L~~y~WPGNvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 410 LNTVLTRYGWPGNVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 2455555555557789999998887655 3345665554
No 190
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.01 E-value=1.2e-09 Score=120.83 Aligned_cols=193 Identities=22% Similarity=0.262 Sum_probs=113.4
Q ss_pred ccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH-----H
Q 003476 334 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-----Y 405 (816)
Q Consensus 334 V~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~~-----~ 405 (816)
++|...+.+.+.+.+..+. .....|||+|++||||+++|++|.... +.||+.++|..+.+. .
T Consensus 1 liG~S~~m~~~~~~~~~~a----------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA----------PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 4677776666666555432 234569999999999999999997644 579999999865321 1
Q ss_pred hhcch-------HHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhcc-----CC-CCCCcE
Q 003476 406 VGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD-----GF-DSNSAV 472 (816)
Q Consensus 406 vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emD-----g~-~~~~~V 472 (816)
.|... .....+|+.|. ..+|||||||.+....+ ..|-.++..-. +. .....+
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a~---gGtL~Ldei~~L~~~~Q------------~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERAD---GGTLFLDELATASLLVQ------------EKLLRVIEYGEFERVGGSQTLQVDV 135 (329)
T ss_pred hccccccccCcccccCCchhhCC---CCEEEeCChHhCCHHHH------------HHHHHHHHcCcEEecCCCceeccce
Confidence 12110 01122344443 45999999999864332 12222232210 00 112457
Q ss_pred EEEEEcCCC-------CCCCcccCCCCcccceEEecCCCHHHHH----HHHHHHHhc----CCCC----CccccCHHHHH
Q 003476 473 IVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGRE----AILKVHVSK----KELP----LAKDIDLGDIA 533 (816)
Q Consensus 473 iVIaATN~p-------d~LDpALlRpGRFdr~I~v~~Pd~~eR~----~ILk~~l~~----~~l~----l~~dvdl~~LA 533 (816)
.+|++||.. ..+.+.|.. ||. .+.|..|...+|. .+++.++.+ .+.+ +.++ .+..|.
T Consensus 136 RiI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~-a~~~L~ 211 (329)
T TIGR02974 136 RLVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQ-AREQLL 211 (329)
T ss_pred EEEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHH-HHHHHH
Confidence 899999763 123344443 443 4567778877765 333443332 2222 2222 355666
Q ss_pred hhCCCCCHHHHHHHHHHHHHHH
Q 003476 534 SMTTGFTGADLANLVNEAALLA 555 (816)
Q Consensus 534 ~~t~G~SgaDL~~LvneAa~~A 555 (816)
.....-+.++|++++..|+..+
T Consensus 212 ~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 212 EYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred hCCCCchHHHHHHHHHHHHHhC
Confidence 6665567899999999888765
No 191
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.99 E-value=3.5e-09 Score=127.62 Aligned_cols=199 Identities=22% Similarity=0.297 Sum_probs=122.5
Q ss_pred ccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH
Q 003476 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL 404 (816)
Q Consensus 328 ~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~~ 404 (816)
..+|++++|...+.+.+.+.+..+.. ....|||+|++|||||++|++|.... +.||+.++|..+...
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a~----------~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVAQ----------SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHhC----------CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 35789999999988888776665432 23469999999999999999998754 679999999865321
Q ss_pred -----Hhhcc-------hHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhc--cCC----
Q 003476 405 -----YVGMG-------ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM--DGF---- 466 (816)
Q Consensus 405 -----~vG~~-------~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~em--Dg~---- 466 (816)
..|.. .......|+.|. ..+|||||||.+....+ .+. -.++..- ...
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a~---~GtL~Ldei~~L~~~~Q-----------~~L-~~~l~~~~~~~~g~~~ 506 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELAD---KSSLFLDEVGDMPLELQ-----------PKL-LRVLQEQEFERLGSNK 506 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhcC---CCeEEEechhhCCHHHH-----------HHH-HHHHHhCCEEeCCCCC
Confidence 22210 011223444443 45999999999864322 122 2222221 000
Q ss_pred CCCCcEEEEEEcCCCCCCCcccCCCCcccc-------eEEecCCCHHHHHH----HHHHHHhc----CCCC---CccccC
Q 003476 467 DSNSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGREA----ILKVHVSK----KELP---LAKDID 528 (816)
Q Consensus 467 ~~~~~ViVIaATN~pd~LDpALlRpGRFdr-------~I~v~~Pd~~eR~~----ILk~~l~~----~~l~---l~~dvd 528 (816)
....++.+|++|+..- ..+...|+|.. .+.|..|...+|.+ +++.++.+ .+.+ +.++ .
T Consensus 507 ~~~~~~RiI~~t~~~l---~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~-a 582 (686)
T PRK15429 507 IIQTDVRLIAATNRDL---KKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAE-T 582 (686)
T ss_pred cccceEEEEEeCCCCH---HHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHH-H
Confidence 1124678999998641 11112233332 56788888888754 34444332 1222 2222 3
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 003476 529 LGDIASMTTGFTGADLANLVNEAALLA 555 (816)
Q Consensus 529 l~~LA~~t~G~SgaDL~~LvneAa~~A 555 (816)
+..|.....-.+.++|+++++.|+..+
T Consensus 583 l~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 583 LRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 566667776668899999999988765
No 192
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=6e-09 Score=115.15 Aligned_cols=160 Identities=19% Similarity=0.304 Sum_probs=107.6
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-------EEEe-ech--------hhHHHHh-----hcchHHHHHHHHHH
Q 003476 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC-SAS--------EFVELYV-----GMGASRVRDLFARA 420 (816)
Q Consensus 362 ~~~pkGVLL~GPPGTGKT~LAkALA~elgvp-------fi~i-s~s--------~~~~~~v-----G~~~~~vr~lF~~A 420 (816)
.+.|..+||+||+|+|||++|+++|..+.+. +-.+ +|. ++..... .-+...+|++.+.+
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~ 98 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFV 98 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHH
Confidence 5678899999999999999999999987542 1111 010 1100000 12345777777666
Q ss_pred Hh----cCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccc
Q 003476 421 KK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDR 496 (816)
Q Consensus 421 ~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr 496 (816)
.. ....|++|||+|.+.. ...|.||..|+. +..++++|.+|+.++.|.|++++ |..
T Consensus 99 ~~~~~~~~~kv~iI~~a~~m~~---------------~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc~- 158 (328)
T PRK05707 99 VQTAQLGGRKVVLIEPAEAMNR---------------NAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RCQ- 158 (328)
T ss_pred hhccccCCCeEEEECChhhCCH---------------HHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hce-
Confidence 53 3345999999999853 456899999984 44678888999999999999998 643
Q ss_pred eEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHH
Q 003476 497 VVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANL 547 (816)
Q Consensus 497 ~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~L 547 (816)
.+.|.+|+.++..+.|...... ..+.+...++..+.| ++.....+
T Consensus 159 ~~~~~~~~~~~~~~~L~~~~~~-----~~~~~~~~~l~la~G-sp~~A~~l 203 (328)
T PRK05707 159 QQACPLPSNEESLQWLQQALPE-----SDERERIELLTLAGG-SPLRALQL 203 (328)
T ss_pred eeeCCCcCHHHHHHHHHHhccc-----CChHHHHHHHHHcCC-CHHHHHHH
Confidence 6999999999988888765311 112223455666666 44443333
No 193
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=4.4e-09 Score=113.84 Aligned_cols=83 Identities=30% Similarity=0.436 Sum_probs=62.2
Q ss_pred EEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCC--------CCCcEEEEEEc----CCCCCCCcccCCCCc
Q 003476 426 SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------SNSAVIVLGAT----NRSDVLDPALRRPGR 493 (816)
Q Consensus 426 ~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~--------~~~~ViVIaAT----N~pd~LDpALlRpGR 493 (816)
.||||||||.++.+.+.+ +.+-.++.+-..||-.++|-. ..+++++||+- ..|..|-|.|. ||
T Consensus 252 GIvFIDEIDKIa~~~~~g---~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GR 326 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSG---GPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GR 326 (444)
T ss_pred CeEEEehhhHHHhcCCCC---CCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CC
Confidence 499999999999765421 223345556667777777642 24678999886 46788888886 69
Q ss_pred ccceEEecCCCHHHHHHHHH
Q 003476 494 FDRVVMVETPDKIGREAILK 513 (816)
Q Consensus 494 Fdr~I~v~~Pd~~eR~~ILk 513 (816)
|.-.+++...+.++...||.
T Consensus 327 fPIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 327 FPIRVELDALTKEDFERILT 346 (444)
T ss_pred CceEEEcccCCHHHHHHHHc
Confidence 99999999999999887764
No 194
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.93 E-value=1.3e-09 Score=109.78 Aligned_cols=111 Identities=32% Similarity=0.358 Sum_probs=74.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCC----cEEEeechhhHHHHhhcchHHHHHHHHHH----HhcCCEEEEEcCccchh
Q 003476 366 RGVLLVGLPGTGKTLLAKAVAGEAEV----PFISCSASEFVELYVGMGASRVRDLFARA----KKEAPSIIFIDEIDAVA 437 (816)
Q Consensus 366 kGVLL~GPPGTGKT~LAkALA~elgv----pfi~is~s~~~~~~vG~~~~~vr~lF~~A----~~~aP~ILfIDEIDaL~ 437 (816)
..+||+||+|||||.+|+++|..+.. +++.++++++.+. +.....+..++..+ ......||||||||.+.
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~ 81 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAH 81 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhhcc
Confidence 45899999999999999999999997 9999999998761 11112222222211 01111299999999998
Q ss_pred hccCCccccccchHHHHHHHHHHhhccCCC---------CCCcEEEEEEcCCCC
Q 003476 438 KSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------SNSAVIVLGATNRSD 482 (816)
Q Consensus 438 ~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~---------~~~~ViVIaATN~pd 482 (816)
...+ ...+-..+.+.+.||+.||+-. .-.++++|+|+|.-.
T Consensus 82 ~~~~----~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 82 PSNS----GGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp HTTT----TCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred cccc----ccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 7522 2334445567788888775321 125789999999753
No 195
>PRK08116 hypothetical protein; Validated
Probab=98.93 E-value=7.3e-09 Score=111.44 Aligned_cols=124 Identities=20% Similarity=0.265 Sum_probs=74.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHHhh----cchHHHHHHHHHHHhcCCEEEEEcCccch
Q 003476 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVG----MGASRVRDLFARAKKEAPSIIFIDEIDAV 436 (816)
Q Consensus 364 ~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~~~vG----~~~~~vr~lF~~A~~~aP~ILfIDEIDaL 436 (816)
.+.|++|+|+||||||+||.|+|+++ +.+++.++.+++...+.. .......++++... ...+|+|||++..
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e 190 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAE 190 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCC
Confidence 34689999999999999999999975 789999999887765422 11122223343332 2349999999642
Q ss_pred hhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCC-CC----CCcccCCCCcc---cceEEecCCCH
Q 003476 437 AKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS-DV----LDPALRRPGRF---DRVVMVETPDK 505 (816)
Q Consensus 437 ~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~p-d~----LDpALlRpGRF---dr~I~v~~Pd~ 505 (816)
. ..+.....+..++... .. .+..+|.|||.+ +. ++..+.+ |+ ...|.+.-||.
T Consensus 191 ~----------~t~~~~~~l~~iin~r---~~-~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 191 R----------DTEWAREKVYNIIDSR---YR-KGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred C----------CCHHHHHHHHHHHHHH---HH-CCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 1 1222233333444432 11 233566788865 22 4555554 43 23455666664
No 196
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=7.1e-09 Score=114.57 Aligned_cols=154 Identities=17% Similarity=0.157 Sum_probs=107.1
Q ss_pred ccccccC-ChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE--E---EeechhhHH
Q 003476 330 TFADVAG-VDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF--I---SCSASEFVE 403 (816)
Q Consensus 330 tf~DV~G-~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpf--i---~is~s~~~~ 403 (816)
.|++|+| ++.+++.|+..+.. .+.|..+||+||+|+|||++|+++|+.+.++- - .-.|.....
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-----------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-----------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 5889999 88898888877642 35677799999999999999999999864321 0 000111110
Q ss_pred H------------Hhh--cchHHHHHHHHHHHh----cCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccC
Q 003476 404 L------------YVG--MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG 465 (816)
Q Consensus 404 ~------------~vG--~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg 465 (816)
. ..| .+...+|++.+.+.. ....|++|||+|.+.. ...|.||..|+.
T Consensus 72 ~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~---------------~a~NaLLK~LEE 136 (329)
T PRK08058 72 IDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA---------------SAANSLLKFLEE 136 (329)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH---------------HHHHHHHHHhcC
Confidence 0 001 123456666655442 2345999999998853 355889999984
Q ss_pred CCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHH
Q 003476 466 FDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKV 514 (816)
Q Consensus 466 ~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~ 514 (816)
+...+++|.+|+.+..|-|++++ |. ..+.+.+|+.++..++|+.
T Consensus 137 --Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 137 --PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred --CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 44667777788888899999988 53 4899999999888776653
No 197
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.90 E-value=1.3e-08 Score=113.03 Aligned_cols=83 Identities=22% Similarity=0.286 Sum_probs=62.6
Q ss_pred cc-cccCChHHHHHHHHHHHHhcChhHHhhhCC-CCCCeEEEEcCCCCcHHHHHHHHHHhcCC-------cEEEeec---
Q 003476 331 FA-DVAGVDEAKEELEEIVEFLRSPDKYIRLGA-RPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISCSA--- 398 (816)
Q Consensus 331 f~-DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~-~~pkGVLL~GPPGTGKT~LAkALA~elgv-------pfi~is~--- 398 (816)
|+ |++|++++++++. ++++.... |. ...+.++|+||||||||+||++||+.++. |++.+..
T Consensus 49 F~~~~~G~~~~i~~lv---~~l~~~a~----g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~ 121 (361)
T smart00763 49 FDHDFFGMEEAIERFV---NYFKSAAQ----GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGE 121 (361)
T ss_pred cchhccCcHHHHHHHH---HHHHHHHh----cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCC
Confidence 66 8999999866554 55544321 32 23467899999999999999999999987 9999988
Q ss_pred -hhhHHHHhhcchHHHHHHHHHH
Q 003476 399 -SEFVELYVGMGASRVRDLFARA 420 (816)
Q Consensus 399 -s~~~~~~vG~~~~~vr~lF~~A 420 (816)
+.+.+..++.....+|+.|.+.
T Consensus 122 ~sp~~e~Pl~l~p~~~r~~~~~~ 144 (361)
T smart00763 122 ESPMHEDPLHLFPDELREDLEDE 144 (361)
T ss_pred CCCCccCCcccCCHHHHHHHHHH
Confidence 7777776666666666666443
No 198
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.90 E-value=4e-09 Score=109.29 Aligned_cols=204 Identities=22% Similarity=0.277 Sum_probs=125.0
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-C----CcEEEee
Q 003476 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-E----VPFISCS 397 (816)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el-g----vpfi~is 397 (816)
.++++++.+.||+|.++..+.|+-+...-. .| +++|.||||||||+-+.++|+++ | --+..++
T Consensus 18 VeKYrP~~l~dIVGNe~tv~rl~via~~gn-----------mP-~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELN 85 (333)
T KOG0991|consen 18 VEKYRPSVLQDIVGNEDTVERLSVIAKEGN-----------MP-NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELN 85 (333)
T ss_pred HHhhCchHHHHhhCCHHHHHHHHHHHHcCC-----------CC-ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhcc
Confidence 467788999999999999998887664322 23 58999999999999999999986 3 1345555
Q ss_pred chhhHHHHhhcchHHHH---HHHHHHHhcC-C---EEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCC
Q 003476 398 ASEFVELYVGMGASRVR---DLFARAKKEA-P---SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNS 470 (816)
Q Consensus 398 ~s~~~~~~vG~~~~~vr---~lF~~A~~~a-P---~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~ 470 (816)
+|+-. +-..+| ..|.+-+-.- | .||++||.|++.... .|.+ -.-|+-+.+.
T Consensus 86 ASdeR------GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gA------------QQAl---RRtMEiyS~t- 143 (333)
T KOG0991|consen 86 ASDER------GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGA------------QQAL---RRTMEIYSNT- 143 (333)
T ss_pred Ccccc------ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHH------------HHHH---HHHHHHHccc-
Confidence 55432 222233 3455444332 2 499999999986322 1222 2223323332
Q ss_pred cEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHHHH
Q 003476 471 AVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNE 550 (816)
Q Consensus 471 ~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lvne 550 (816)
..+..++|..+.+-+.+.+ |.. .+.+...+..+...-|....+..+++..++ -++.+.-...| |+++.+|.
T Consensus 144 -tRFalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~d-gLeaiifta~G----DMRQalNn 214 (333)
T KOG0991|consen 144 -TRFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDD-GLEAIIFTAQG----DMRQALNN 214 (333)
T ss_pred -chhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcc-hHHHhhhhccc----hHHHHHHH
Confidence 3566688888777666665 322 344555555555544455555555665544 36666655544 78887776
Q ss_pred HHHHHHHhCCccccHHHHHHH
Q 003476 551 AALLAGRLNKVVVEKIDFIHA 571 (816)
Q Consensus 551 Aa~~A~r~~~~~It~~d~~~A 571 (816)
-. |.-.+-..|+.+.+...
T Consensus 215 LQ--st~~g~g~Vn~enVfKv 233 (333)
T KOG0991|consen 215 LQ--STVNGFGLVNQENVFKV 233 (333)
T ss_pred HH--HHhccccccchhhhhhc
Confidence 43 43445556666554433
No 199
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.89 E-value=3.2e-08 Score=105.63 Aligned_cols=100 Identities=18% Similarity=0.211 Sum_probs=77.0
Q ss_pred EEEEEcCC------------CCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCC
Q 003476 473 IVLGATNR------------SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 540 (816)
Q Consensus 473 iVIaATN~------------pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~S 540 (816)
++|.|||+ |.-++-.|+. |. ..|...+++.++..+||+..+...++.+.++. ++.|......-|
T Consensus 319 iiimaTNrgit~iRGTn~~SphGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A-~d~Lt~i~~~ts 394 (454)
T KOG2680|consen 319 IIIMATNRGITRIRGTNYRSPHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDA-LDLLTKIGEATS 394 (454)
T ss_pred EEEEEcCCceEEeecCCCCCCCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHH-HHHHHHhhhhhh
Confidence 56667765 4566666665 43 35666788999999999999998877776653 566666666667
Q ss_pred HHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHH
Q 003476 541 GADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSI 576 (816)
Q Consensus 541 gaDL~~LvneAa~~A~r~~~~~It~~d~~~Al~r~i 576 (816)
-+-..+|+..|.+.|.+++...++.+|+..+..-.+
T Consensus 395 LRYai~Lit~a~~~~~krk~~~v~~~di~r~y~LFl 430 (454)
T KOG2680|consen 395 LRYAIHLITAASLVCLKRKGKVVEVDDIERVYRLFL 430 (454)
T ss_pred HHHHHHHHHHHHHHHHHhcCceeehhHHHHHHHHHh
Confidence 788889999999999999999999999999886544
No 200
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.8e-08 Score=113.95 Aligned_cols=156 Identities=24% Similarity=0.394 Sum_probs=107.8
Q ss_pred HHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEe-echhhHHHHhhcchHHHHHHHHHHHhcC
Q 003476 346 EIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC-SASEFVELYVGMGASRVRDLFARAKKEA 424 (816)
Q Consensus 346 eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~i-s~s~~~~~~vG~~~~~vr~lF~~A~~~a 424 (816)
-++...+++++ .+-..+||.||||+|||.||-.+|...+.||+.+ |..+++.+--...-..++..|+.|.+..
T Consensus 525 llv~qvk~s~~------s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~ 598 (744)
T KOG0741|consen 525 LLVQQVKNSER------SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSP 598 (744)
T ss_pred HHHHHhhcccc------CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCc
Confidence 34455555544 4556799999999999999999999999999985 4444443222223356899999999988
Q ss_pred CEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCC-cEEEEEEcCCCCCCCc-ccCCCCcccceEEecC
Q 003476 425 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNS-AVIVLGATNRSDVLDP-ALRRPGRFDRVVMVET 502 (816)
Q Consensus 425 P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~-~ViVIaATN~pd~LDp-ALlRpGRFdr~I~v~~ 502 (816)
-+||++|+|+.|..- ...+....+-++..|+..+....+.. +.+|++||.+.+.|.. .++. .|+-.+.|+.
T Consensus 599 lsiivvDdiErLiD~-----vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpn 671 (744)
T KOG0741|consen 599 LSIIVVDDIERLLDY-----VPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPN 671 (744)
T ss_pred ceEEEEcchhhhhcc-----cccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCc
Confidence 899999999988632 22344455667778888877665544 4677788876654432 2343 6888888876
Q ss_pred CCH-HHHHHHHHH
Q 003476 503 PDK-IGREAILKV 514 (816)
Q Consensus 503 Pd~-~eR~~ILk~ 514 (816)
-.. ++..+++..
T Consensus 672 l~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 672 LTTGEQLLEVLEE 684 (744)
T ss_pred cCchHHHHHHHHH
Confidence 554 555555443
No 201
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.83 E-value=2.6e-08 Score=120.70 Aligned_cols=160 Identities=19% Similarity=0.205 Sum_probs=90.3
Q ss_pred cccCChHHHHHHHHHHHHhcChhH-----------HhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-------CCcEE
Q 003476 333 DVAGVDEAKEELEEIVEFLRSPDK-----------YIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFI 394 (816)
Q Consensus 333 DV~G~ee~K~~L~eiV~~Lk~p~~-----------~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el-------gvpfi 394 (816)
.|.|++.+|+.|. +..+....+ |.....+...+|||+|+||||||.+|++++.-. |.++.
T Consensus 451 ~I~G~e~vK~ail--L~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s 528 (915)
T PTZ00111 451 SIKARNNVKIGLL--CQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSS 528 (915)
T ss_pred eEECCHHHHHHHH--HHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCc
Confidence 5788888887662 222222111 001123445579999999999999999998854 24555
Q ss_pred EeechhhHHHH-hhcchHHH-HHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCC------
Q 003476 395 SCSASEFVELY-VGMGASRV-RDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF------ 466 (816)
Q Consensus 395 ~is~s~~~~~~-vG~~~~~v-r~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~------ 466 (816)
.+.+..+.... ...+...+ ...+..|. ..+++|||+|.+....+ ..|+..|+.-
T Consensus 529 ~vgLTa~~~~~d~~tG~~~le~GaLvlAd---gGtL~IDEidkms~~~Q---------------~aLlEaMEqqtIsI~K 590 (915)
T PTZ00111 529 SVGLTASIKFNESDNGRAMIQPGAVVLAN---GGVCCIDELDKCHNESR---------------LSLYEVMEQQTVTIAK 590 (915)
T ss_pred cccccchhhhcccccCcccccCCcEEEcC---CCeEEecchhhCCHHHH---------------HHHHHHHhCCEEEEec
Confidence 54444332100 00010000 01112222 34999999999853321 2333333211
Q ss_pred -----CCCCcEEEEEEcCCC-------------CCCCcccCCCCcccceEE-ecCCCHHHHHHHHHH
Q 003476 467 -----DSNSAVIVLGATNRS-------------DVLDPALRRPGRFDRVVM-VETPDKIGREAILKV 514 (816)
Q Consensus 467 -----~~~~~ViVIaATN~p-------------d~LDpALlRpGRFdr~I~-v~~Pd~~eR~~ILk~ 514 (816)
.-+.++.||||+|.. -.|+++|++ |||..+. ++.|+.+.-..|.++
T Consensus 591 aGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~h 655 (915)
T PTZ00111 591 AGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLS 655 (915)
T ss_pred CCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHH
Confidence 123578999999974 146789998 9997654 456776655555443
No 202
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.79 E-value=1.3e-08 Score=115.25 Aligned_cols=203 Identities=26% Similarity=0.356 Sum_probs=126.9
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH
Q 003476 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (816)
Q Consensus 327 ~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~ 403 (816)
+...+.+|+|...+...+.+.|+..... ...|||.|.+||||-.+||+|-... +.||+.++|+.+.+
T Consensus 218 ~~~~~~~iIG~S~am~~ll~~i~~VA~S----------d~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 218 VVLEVGGIIGRSPAMRQLLKEIEVVAKS----------DSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hhcccccceecCHHHHHHHHHHHHHhcC----------CCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 3678899999999999998888775443 4479999999999999999997755 67999999987765
Q ss_pred HHhhc-chHHHHHHHHHHHhc--------CCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhh--ccCCCCC---
Q 003476 404 LYVGM-GASRVRDLFARAKKE--------APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE--MDGFDSN--- 469 (816)
Q Consensus 404 ~~vG~-~~~~vr~lF~~A~~~--------aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e--mDg~~~~--- 469 (816)
..... --...+..|.-|... ...-||+|||..|.-.-|. -+-..|++ ++....+
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQa------------KLLRvLQegEieRvG~~r~i 355 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQA------------KLLRVLQEGEIERVGGDRTI 355 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCCCeEechhhccCCHHHHH------------HHHHHHhhcceeecCCCcee
Confidence 32110 001122233333221 1238999999888644332 12222332 3322222
Q ss_pred -CcEEEEEEcCCCCCCCcccCCCCccc-------ceEEecCCCHHHHHH----HHHHHHhc----CC---CCCccccCHH
Q 003476 470 -SAVIVLGATNRSDVLDPALRRPGRFD-------RVVMVETPDKIGREA----ILKVHVSK----KE---LPLAKDIDLG 530 (816)
Q Consensus 470 -~~ViVIaATN~pd~LDpALlRpGRFd-------r~I~v~~Pd~~eR~~----ILk~~l~~----~~---l~l~~dvdl~ 530 (816)
-.|-||||||+- |..++ +-|+|- -++.+..|...+|.+ +.++++.+ .+ +.++.+ .++
T Consensus 356 kVDVRiIAATNRD--L~~~V-~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~-Al~ 431 (550)
T COG3604 356 KVDVRVIAATNRD--LEEMV-RDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAE-ALE 431 (550)
T ss_pred EEEEEEEeccchh--HHHHH-HcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHH-HHH
Confidence 248999999983 33332 335553 145566788877752 22333322 12 222222 255
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHHH
Q 003476 531 DIASMTTGFTGADLANLVNEAALLA 555 (816)
Q Consensus 531 ~LA~~t~G~SgaDL~~LvneAa~~A 555 (816)
.|.....--+.++|+|+|++|++.|
T Consensus 432 ~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 432 LLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 5666665557899999999999988
No 203
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=2.8e-08 Score=110.36 Aligned_cols=135 Identities=21% Similarity=0.240 Sum_probs=97.5
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEE---Eeechhh---HH-----------HHh-----------------
Q 003476 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI---SCSASEF---VE-----------LYV----------------- 406 (816)
Q Consensus 361 g~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi---~is~s~~---~~-----------~~v----------------- 406 (816)
..+.|.++||+||+|+||+++|+++|..+.+.-- .-.|... .. ...
T Consensus 17 ~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~ 96 (342)
T PRK06964 17 RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEA 96 (342)
T ss_pred cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccc
Confidence 3478999999999999999999999998755220 0011111 00 000
Q ss_pred --------------hcchHHHHHHHHHHHh----cCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCC
Q 003476 407 --------------GMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS 468 (816)
Q Consensus 407 --------------G~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~ 468 (816)
.-+...+|++.+.+.. ..-.|++||++|.+.. ..-|.||..++ ++
T Consensus 97 ~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~---------------~AaNaLLKtLE--EP 159 (342)
T PRK06964 97 DADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV---------------AAANALLKTLE--EP 159 (342)
T ss_pred hhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH---------------HHHHHHHHHhc--CC
Confidence 0123566776665432 2234999999999853 45699999999 56
Q ss_pred CCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHH
Q 003476 469 NSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVH 515 (816)
Q Consensus 469 ~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~ 515 (816)
..++++|.+|++++.|.|++++ |. ..+.|++|+.++..+.|...
T Consensus 160 p~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 160 PPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred CcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 7789999999999999999998 65 58999999999888887653
No 204
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.78 E-value=1.6e-08 Score=115.41 Aligned_cols=206 Identities=19% Similarity=0.260 Sum_probs=120.2
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHH-
Q 003476 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY- 405 (816)
Q Consensus 330 tf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~~~- 405 (816)
.+.+++|.....+.+.+.+..+. .....++|+|++||||+++|+++.... +.||+.++|..+.+..
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIA----------PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 45678888887776666554332 223569999999999999999998764 5799999998764321
Q ss_pred ----hhcch-------HHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhc-----cCCC-C
Q 003476 406 ----VGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM-----DGFD-S 468 (816)
Q Consensus 406 ----vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~em-----Dg~~-~ 468 (816)
.|... ......|..| ...+|||||||.+....+ ..+-.++..- .+.. .
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l~~~~q------------~~l~~~l~~~~~~~~~~~~~~ 271 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFLDEIGDLPLNLQ------------AKLLRFLQERVIERLGGREEI 271 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeEC---CCCEEEEechhhCCHHHH------------HHHHHHHhhCeEEeCCCCcee
Confidence 11100 0111122223 345999999999864322 1222223221 1100 1
Q ss_pred CCcEEEEEEcCCC-------CCCCcccCCCCcccceEEecCCCHHHHHH----HHHHHHhc----CCC---CCccccCHH
Q 003476 469 NSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVSK----KEL---PLAKDIDLG 530 (816)
Q Consensus 469 ~~~ViVIaATN~p-------d~LDpALlRpGRFdr~I~v~~Pd~~eR~~----ILk~~l~~----~~l---~l~~dvdl~ 530 (816)
...+.+|++|+.. ..+.+.|.. |+. .+.+..|...+|.+ +++.++.+ .+. .+.++ .+.
T Consensus 272 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~-a~~ 347 (445)
T TIGR02915 272 PVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDD-ALR 347 (445)
T ss_pred eeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHH-HHH
Confidence 1357888888764 223333322 332 46777888887764 34444332 121 12222 356
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHH
Q 003476 531 DIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKID 567 (816)
Q Consensus 531 ~LA~~t~G~SgaDL~~LvneAa~~A~r~~~~~It~~d 567 (816)
.|.......+.++|++++..|+..+. ...|+.++
T Consensus 348 ~L~~~~wpgNvreL~~~i~~a~~~~~---~~~i~~~~ 381 (445)
T TIGR02915 348 ALEAHAWPGNVRELENKVKRAVIMAE---GNQITAED 381 (445)
T ss_pred HHHhCCCCChHHHHHHHHHHHHHhCC---CCcccHHH
Confidence 66666666678999999999886552 34555444
No 205
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.77 E-value=2.4e-08 Score=113.91 Aligned_cols=209 Identities=23% Similarity=0.340 Sum_probs=128.6
Q ss_pred ccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH
Q 003476 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL 404 (816)
Q Consensus 328 ~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~~ 404 (816)
...+.+++|...+.+++.+.+..+... .-.|||+|++||||-++|++|-... +-||+.++|..+-+.
T Consensus 137 ~~~~~~liG~S~am~~l~~~i~kvA~s----------~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 137 KSLGGELVGESPAMQQLRRLIAKVAPS----------DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred ccccCCceecCHHHHHHHHHHHHHhCC----------CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 346789999999999999988776543 3469999999999999999997755 569999999865432
Q ss_pred -----Hhhcch-------HHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhh--ccCCCC--
Q 003476 405 -----YVGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE--MDGFDS-- 468 (816)
Q Consensus 405 -----~vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e--mDg~~~-- 468 (816)
..|... .+-...|+.|... .||||||..+...-|. .. -..|++ +....+
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~GG---TLfLDEI~~mpl~~Q~-----------kL-LRvLqe~~~~rvG~~~ 271 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANGG---TLFLDEIGEMPLELQV-----------KL-LRVLQEREFERVGGNK 271 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCCc---eEEeeccccCCHHHHH-----------HH-HHHHHcCeeEecCCCc
Confidence 223111 1223356666544 9999999988644321 11 222222 111111
Q ss_pred --CCcEEEEEEcCCCCCCCcccCCCCccc-------ceEEecCCCHHHHHH----HHHHHHh----cCCCCCccccCH--
Q 003476 469 --NSAVIVLGATNRSDVLDPALRRPGRFD-------RVVMVETPDKIGREA----ILKVHVS----KKELPLAKDIDL-- 529 (816)
Q Consensus 469 --~~~ViVIaATN~pd~LDpALlRpGRFd-------r~I~v~~Pd~~eR~~----ILk~~l~----~~~l~l~~dvdl-- 529 (816)
+-.|-||+|||+. |.. ....|+|- .++.+..|...+|.+ +++++++ ..+.+ ...++-
T Consensus 272 ~i~vdvRiIaaT~~d--L~~-~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~-~~~~s~~a 347 (464)
T COG2204 272 PIKVDVRIIAATNRD--LEE-EVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRP-PKGFSPEA 347 (464)
T ss_pred ccceeeEEEeecCcC--HHH-HHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCC-CCCCCHHH
Confidence 2358999999974 221 22234442 267888899888763 3333333 33222 223333
Q ss_pred -HHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHH
Q 003476 530 -GDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDF 568 (816)
Q Consensus 530 -~~LA~~t~G~SgaDL~~LvneAa~~A~r~~~~~It~~d~ 568 (816)
..|.....--+.++|+|++..++..+ ....|+.+++
T Consensus 348 ~~~L~~y~WPGNVREL~N~ver~~il~---~~~~i~~~~l 384 (464)
T COG2204 348 LAALLAYDWPGNVRELENVVERAVILS---EGPEIEVEDL 384 (464)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHhcC---Cccccchhhc
Confidence 33444444446688888888887766 3344554443
No 206
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.75 E-value=7.8e-08 Score=114.41 Aligned_cols=101 Identities=21% Similarity=0.292 Sum_probs=64.0
Q ss_pred cEEEEEEcCCC--CCCCcccCCCCccc---ceEEecC--CC-HHHHHHHHHHHHhcC----CC-CCccccCHHHHHh---
Q 003476 471 AVIVLGATNRS--DVLDPALRRPGRFD---RVVMVET--PD-KIGREAILKVHVSKK----EL-PLAKDIDLGDIAS--- 534 (816)
Q Consensus 471 ~ViVIaATN~p--d~LDpALlRpGRFd---r~I~v~~--Pd-~~eR~~ILk~~l~~~----~l-~l~~dvdl~~LA~--- 534 (816)
.+.||+++|+. ..+||+|.. ||. ..+.++. ++ .+.+..+++...+.. .+ +++.+. +..|.+
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eA-Va~LI~~~~ 353 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDA-VEEIIREAK 353 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHH-HHHHHHHHH
Confidence 57889999875 567899977 764 3444442 22 455555655443321 11 222221 222221
Q ss_pred hCCC------CCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHH
Q 003476 535 MTTG------FTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (816)
Q Consensus 535 ~t~G------~SgaDL~~LvneAa~~A~r~~~~~It~~d~~~Al~r 574 (816)
+..| ...++|.+++++|...|..++...|+.+|+.+|+.+
T Consensus 354 R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 354 RRAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HHhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 1111 346899999999999999999999999999999865
No 207
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.74 E-value=9.3e-08 Score=101.62 Aligned_cols=133 Identities=17% Similarity=0.242 Sum_probs=81.3
Q ss_pred CCccccccccC-ChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhh
Q 003476 326 GDTITFADVAG-VDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (816)
Q Consensus 326 ~~~vtf~DV~G-~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~ 401 (816)
....+|++..- .+..+..+..+..+.++.. ....+++|+||||||||+|+.++|.++ +..++.++.+++
T Consensus 66 ~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~-------~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l 138 (244)
T PRK07952 66 HQNCSFENYRVECEGQMNALSKARQYVEEFD-------GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADI 138 (244)
T ss_pred ccCCccccccCCCchHHHHHHHHHHHHHhhc-------cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHH
Confidence 34567877753 3333334444444433211 123589999999999999999999987 788999999888
Q ss_pred HHHHhhc---chHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEc
Q 003476 402 VELYVGM---GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (816)
Q Consensus 402 ~~~~vG~---~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaAT 478 (816)
...+... ......++++... ..++|+|||++... ..+....++.+++..-- . ..-.+|.+|
T Consensus 139 ~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~----------~s~~~~~~l~~Ii~~Ry--~--~~~~tiitS 202 (244)
T PRK07952 139 MSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT----------ESRYEKVIINQIVDRRS--S--SKRPTGMLT 202 (244)
T ss_pred HHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC----------CCHHHHHHHHHHHHHHH--h--CCCCEEEeC
Confidence 8644321 1112234444433 45699999998753 22334456666666521 1 223466688
Q ss_pred CCC
Q 003476 479 NRS 481 (816)
Q Consensus 479 N~p 481 (816)
|..
T Consensus 203 Nl~ 205 (244)
T PRK07952 203 NSN 205 (244)
T ss_pred CCC
Confidence 864
No 208
>PRK12377 putative replication protein; Provisional
Probab=98.74 E-value=7.8e-08 Score=102.43 Aligned_cols=101 Identities=20% Similarity=0.222 Sum_probs=64.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHHhhcc--hHHHHHHHHHHHhcCCEEEEEcCccchhhc
Q 003476 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMG--ASRVRDLFARAKKEAPSIIFIDEIDAVAKS 439 (816)
Q Consensus 365 pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~~~vG~~--~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~ 439 (816)
..+++|+||||||||+||.|+|+++ +..++.++..++.......- .....++++.. ....+|+|||++...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~-- 176 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQR-- 176 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCC--
Confidence 4689999999999999999999877 67888888888876432210 01122333333 345699999997643
Q ss_pred cCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCC
Q 003476 440 RDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (816)
Q Consensus 440 r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~p 481 (816)
.++....++.+++..-- ....-+|.|||..
T Consensus 177 --------~s~~~~~~l~~ii~~R~----~~~~ptiitSNl~ 206 (248)
T PRK12377 177 --------ETKNEQVVLNQIIDRRT----ASMRSVGMLTNLN 206 (248)
T ss_pred --------CCHHHHHHHHHHHHHHH----hcCCCEEEEcCCC
Confidence 12233455666665432 1223356678864
No 209
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.73 E-value=1.4e-08 Score=102.11 Aligned_cols=134 Identities=29% Similarity=0.437 Sum_probs=79.0
Q ss_pred ccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH-----H
Q 003476 334 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-----Y 405 (816)
Q Consensus 334 V~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~~-----~ 405 (816)
++|.+...+++.+.+..+. ..+..|||+|++||||+++|++|.... +.||+.++|+.+.+. .
T Consensus 1 liG~s~~m~~~~~~~~~~a----------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA----------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT----------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHh----------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 4677776666666554432 334679999999999999999998865 579999999876432 2
Q ss_pred hhcch-------HHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhc--cCCCC----CCcE
Q 003476 406 VGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM--DGFDS----NSAV 472 (816)
Q Consensus 406 vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~em--Dg~~~----~~~V 472 (816)
.|... .....+|++|... +||||||+.|...-+ .-|-++|..- ..... ...+
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L~~~~Q------------~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDLPPELQ------------AKLLRVLEEGKFTRLGSDKPVPVDV 135 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS-HHHH------------HHHHHHHHHSEEECCTSSSEEE--E
T ss_pred hccccccccccccccCCceeeccce---EEeecchhhhHHHHH------------HHHHHHHhhchhccccccccccccc
Confidence 33211 1123678877666 999999999975432 2223333321 11111 2368
Q ss_pred EEEEEcCCCCCCCcccCCCCccc
Q 003476 473 IVLGATNRSDVLDPALRRPGRFD 495 (816)
Q Consensus 473 iVIaATN~pd~LDpALlRpGRFd 495 (816)
.||++|+.+ |.. +...|+|.
T Consensus 136 RiI~st~~~--l~~-~v~~g~fr 155 (168)
T PF00158_consen 136 RIIASTSKD--LEE-LVEQGRFR 155 (168)
T ss_dssp EEEEEESS---HHH-HHHTTSS-
T ss_pred eEEeecCcC--HHH-HHHcCCCh
Confidence 999999864 222 33345664
No 210
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.70 E-value=5.6e-08 Score=111.79 Aligned_cols=206 Identities=21% Similarity=0.261 Sum_probs=124.4
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH--
Q 003476 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-- 404 (816)
Q Consensus 330 tf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~~-- 404 (816)
.+.+++|.......+.+.+..+. .....+||+|++|||||++|+++.... +.||+.++|+.+...
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLS----------RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHh----------ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 36689998887776666554322 234469999999999999999998875 579999999876331
Q ss_pred ---HhhcchH-------HHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCC-----C--
Q 003476 405 ---YVGMGAS-------RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----D-- 467 (816)
Q Consensus 405 ---~vG~~~~-------~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~-----~-- 467 (816)
..|.... .....|+.| ....|||||||.+....+ ..|+..++.- .
T Consensus 206 ~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l~~i~~l~~~~q---------------~~L~~~l~~~~~~~~~~~ 267 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDMPLDVQ---------------TRLLRVLADGQFYRVGGY 267 (469)
T ss_pred HHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEEeccccCCHHHH---------------HHHHHHHhcCcEEeCCCC
Confidence 1111100 001112222 245899999999864322 2333333211 0
Q ss_pred --CCCcEEEEEEcCCC-------CCCCcccCCCCcccceEEecCCCHHHHH----HHHHHHHhc----CCCC---Ccccc
Q 003476 468 --SNSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGRE----AILKVHVSK----KELP---LAKDI 527 (816)
Q Consensus 468 --~~~~ViVIaATN~p-------d~LDpALlRpGRFdr~I~v~~Pd~~eR~----~ILk~~l~~----~~l~---l~~dv 527 (816)
....+.+|+||+.. ..+.+.|.. ||. .+.+..|...+|. .++.+++.+ .+.+ +.++
T Consensus 268 ~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~- 343 (469)
T PRK10923 268 APVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPE- 343 (469)
T ss_pred CeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHH-
Confidence 12356888888763 133344443 443 4667777766664 355555432 1211 2222
Q ss_pred CHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHH
Q 003476 528 DLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIH 570 (816)
Q Consensus 528 dl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~~~~It~~d~~~ 570 (816)
.+..|.......+.++|+++++.|...+ ....|+.+|+..
T Consensus 344 a~~~L~~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~l~~ 383 (469)
T PRK10923 344 TEAALTRLAWPGNVRQLENTCRWLTVMA---AGQEVLIQDLPG 383 (469)
T ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCcH
Confidence 3666777776668899999999988766 345677777643
No 211
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.69 E-value=1.4e-07 Score=105.59 Aligned_cols=160 Identities=26% Similarity=0.392 Sum_probs=102.4
Q ss_pred ccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-------CCcEEEe----
Q 003476 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISC---- 396 (816)
Q Consensus 328 ~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el-------gvpfi~i---- 396 (816)
...|.-++|++..|..|--- --+|+ -.|+||-|+.|||||+++||||.-+ |+||-.=
T Consensus 13 ~~pf~aivGqd~lk~aL~l~---av~P~---------iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLN---AVDPQ---------IGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred ccchhhhcCchHHHHHHhhh---hcccc---------cceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 46788999999988866432 12222 2579999999999999999999965 3433110
Q ss_pred --echhhHH-------------------HHhhcchHHHH------HHHH----------HHHhcCCEEEEEcCccchhhc
Q 003476 397 --SASEFVE-------------------LYVGMGASRVR------DLFA----------RAKKEAPSIIFIDEIDAVAKS 439 (816)
Q Consensus 397 --s~s~~~~-------------------~~vG~~~~~vr------~lF~----------~A~~~aP~ILfIDEIDaL~~~ 439 (816)
.|..+.. .-.+.++.++- ...+ .|+. +-.|++|||+..|..
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~A-nRGIlYvDEvnlL~d- 158 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARA-NRGILYVDEVNLLDD- 158 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhc-cCCEEEEeccccccH-
Confidence 1121121 22233333221 1111 1111 224999999987742
Q ss_pred cCCccccccchHHHHHHHHHHhhcc---------CC--CCCCcEEEEEEcCCC-CCCCcccCCCCcccceEEecCC-CHH
Q 003476 440 RDGRFRIVSNDEREQTLNQLLTEMD---------GF--DSNSAVIVLGATNRS-DVLDPALRRPGRFDRVVMVETP-DKI 506 (816)
Q Consensus 440 r~~~~~~~~~~e~~~~Ln~LL~emD---------g~--~~~~~ViVIaATN~p-d~LDpALlRpGRFdr~I~v~~P-d~~ 506 (816)
++.+.||+.+. |+ .-..++++|+|+|.- ..|-|.|+. ||...|.+..| +.+
T Consensus 159 --------------~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~ 222 (423)
T COG1239 159 --------------HLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLE 222 (423)
T ss_pred --------------HHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHH
Confidence 34555555443 22 223578999999976 478888888 99999999876 578
Q ss_pred HHHHHHHHHHh
Q 003476 507 GREAILKVHVS 517 (816)
Q Consensus 507 eR~~ILk~~l~ 517 (816)
+|.+|++..+.
T Consensus 223 ~rv~Ii~r~~~ 233 (423)
T COG1239 223 ERVEIIRRRLA 233 (423)
T ss_pred HHHHHHHHHHH
Confidence 88888887654
No 212
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=5.2e-08 Score=108.42 Aligned_cols=97 Identities=37% Similarity=0.616 Sum_probs=69.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH-HHhhcch-HHHHHHHHHHH----hcCCEEEEEcCccchhhc
Q 003476 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LYVGMGA-SRVRDLFARAK----KEAPSIIFIDEIDAVAKS 439 (816)
Q Consensus 366 kGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~-~~vG~~~-~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~ 439 (816)
.+|||.||+|+|||+||+.||.-+++||..++|..+.. .|+|+.. ..+..++..|. +.+..|+||||+|.|...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 46999999999999999999999999999999998876 5888764 44556665553 234559999999999854
Q ss_pred cCCc--cccccchHHHHHHHHHHhhccC
Q 003476 440 RDGR--FRIVSNDEREQTLNQLLTEMDG 465 (816)
Q Consensus 440 r~~~--~~~~~~~e~~~~Ln~LL~emDg 465 (816)
..+- ....+. +.+-..||..++|
T Consensus 307 ~~~i~~~RDVsG---EGVQQaLLKllEG 331 (564)
T KOG0745|consen 307 AESIHTSRDVSG---EGVQQALLKLLEG 331 (564)
T ss_pred Cccccccccccc---hhHHHHHHHHhcc
Confidence 3221 011222 2344556666664
No 213
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.68 E-value=2e-07 Score=102.91 Aligned_cols=134 Identities=18% Similarity=0.303 Sum_probs=96.0
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-------EEEe-ech--------hhHHHH--hh--cchHHHHHHHHHHH
Q 003476 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC-SAS--------EFVELY--VG--MGASRVRDLFARAK 421 (816)
Q Consensus 362 ~~~pkGVLL~GPPGTGKT~LAkALA~elgvp-------fi~i-s~s--------~~~~~~--vG--~~~~~vr~lF~~A~ 421 (816)
.+.|.++||+||+|+||+++|+++|..+-+. +-.+ +|. ++.... .| -+...+|++.+.+.
T Consensus 21 ~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~ 100 (325)
T PRK06871 21 GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVS 100 (325)
T ss_pred CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHh
Confidence 4667889999999999999999999976441 1111 010 110000 01 23466777766554
Q ss_pred h----cCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccce
Q 003476 422 K----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRV 497 (816)
Q Consensus 422 ~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~ 497 (816)
. ..-.|++||++|.+.. ..-|.||..++ ++..++++|.+|+.++.|.|.+++ |. ..
T Consensus 101 ~~~~~g~~KV~iI~~a~~m~~---------------~AaNaLLKtLE--EPp~~~~fiL~t~~~~~llpTI~S--RC-~~ 160 (325)
T PRK06871 101 QHAQQGGNKVVYIQGAERLTE---------------AAANALLKTLE--EPRPNTYFLLQADLSAALLPTIYS--RC-QT 160 (325)
T ss_pred hccccCCceEEEEechhhhCH---------------HHHHHHHHHhc--CCCCCeEEEEEECChHhCchHHHh--hc-eE
Confidence 3 2335999999999853 35589999998 466788999999999999999988 53 48
Q ss_pred EEecCCCHHHHHHHHHHH
Q 003476 498 VMVETPDKIGREAILKVH 515 (816)
Q Consensus 498 I~v~~Pd~~eR~~ILk~~ 515 (816)
+.|.+|+.++..+.|...
T Consensus 161 ~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred EeCCCCCHHHHHHHHHHH
Confidence 899999999888777764
No 214
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.67 E-value=1.5e-07 Score=103.31 Aligned_cols=133 Identities=23% Similarity=0.324 Sum_probs=78.6
Q ss_pred ccccccccCCh-HHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH
Q 003476 328 TITFADVAGVD-EAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (816)
Q Consensus 328 ~vtf~DV~G~e-e~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~ 403 (816)
..+|+++...+ ..+..+..+.+|+.+ |.. ....+|++|+||+|||||+||.|+|+++ |.++..++.++|+.
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~---~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~ 197 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEA---YPP--GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR 197 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHH---hhc--cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH
Confidence 35666665443 222333334444433 211 2346899999999999999999999987 78888888888766
Q ss_pred HHhhc-chHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhh-ccCCCCCCcEEEEEEcCCC
Q 003476 404 LYVGM-GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE-MDGFDSNSAVIVLGATNRS 481 (816)
Q Consensus 404 ~~vG~-~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e-mDg~~~~~~ViVIaATN~p 481 (816)
..... ....+.+.++..+ ...+|+||||.+-.. ..-.+..++..++.. |. .+.-+|.|||.+
T Consensus 198 ~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~~---------s~~~~~~ll~~Il~~R~~-----~~~~ti~TSNl~ 261 (306)
T PRK08939 198 ELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQM---------SSWVRDEVLGVILQYRMQ-----EELPTFFTSNFD 261 (306)
T ss_pred HHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCccc---------cHHHHHHHHHHHHHHHHH-----CCCeEEEECCCC
Confidence 43221 1112334444433 345999999976421 112223455555543 22 234567789865
No 215
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.67 E-value=3.2e-08 Score=98.68 Aligned_cols=136 Identities=22% Similarity=0.334 Sum_probs=86.8
Q ss_pred CChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEE----eechhhHHH-------
Q 003476 336 GVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS----CSASEFVEL------- 404 (816)
Q Consensus 336 G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~----is~s~~~~~------- 404 (816)
|++++++.|...+.. .+.|..+||+||+|+||+++|+++|..+-+.-.. -.|......
T Consensus 1 gq~~~~~~L~~~~~~-----------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-----------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHC-----------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHc-----------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 778888888776643 3567789999999999999999999976331111 111111110
Q ss_pred --H---h----hcchHHHHHHHHHHHh----cCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCc
Q 003476 405 --Y---V----GMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSA 471 (816)
Q Consensus 405 --~---v----G~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ 471 (816)
+ . .-....++++.+.+.. ....|++|||+|.+.. ...|.||..|+ ++..+
T Consensus 70 ~~~~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~---------------~a~NaLLK~LE--epp~~ 132 (162)
T PF13177_consen 70 FIIIKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE---------------EAQNALLKTLE--EPPEN 132 (162)
T ss_dssp EEEEETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H---------------HHHHHHHHHHH--STTTT
T ss_pred eEEEecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH---------------HHHHHHHHHhc--CCCCC
Confidence 0 0 1134566766665532 2356999999999853 45689999998 44567
Q ss_pred EEEEEEcCCCCCCCcccCCCCcccceEEecC
Q 003476 472 VIVLGATNRSDVLDPALRRPGRFDRVVMVET 502 (816)
Q Consensus 472 ViVIaATN~pd~LDpALlRpGRFdr~I~v~~ 502 (816)
+++|.+|+.++.|-|.+++ |. ..+.+++
T Consensus 133 ~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~ 160 (162)
T PF13177_consen 133 TYFILITNNPSKILPTIRS--RC-QVIRFRP 160 (162)
T ss_dssp EEEEEEES-GGGS-HHHHT--TS-EEEEE--
T ss_pred EEEEEEECChHHChHHHHh--hc-eEEecCC
Confidence 8899999999999999998 53 3555544
No 216
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.66 E-value=1.6e-07 Score=107.51 Aligned_cols=205 Identities=20% Similarity=0.296 Sum_probs=119.9
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH--
Q 003476 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-- 404 (816)
Q Consensus 330 tf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~~-- 404 (816)
.+.+++|.......+.+.+..+.. ....+|++|++||||+++|+++.... +.||+.++|..+.+.
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIAL----------SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcC----------CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 455688877766555444433222 23469999999999999999997654 579999999876432
Q ss_pred ---HhhcchH-------HHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccC--C---CC-
Q 003476 405 ---YVGMGAS-------RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG--F---DS- 468 (816)
Q Consensus 405 ---~vG~~~~-------~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg--~---~~- 468 (816)
..|.... .....|..| ...+|||||||.+....+ ..|+..++. + ..
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ld~i~~l~~~~q---------------~~L~~~l~~~~~~~~~~~ 272 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLLDEIGEMPLVLQ---------------AKLLRILQEREFERIGGH 272 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEEechhhCCHHHH---------------HHHHHHHhcCcEEeCCCC
Confidence 1121100 001123222 235999999999864322 223333221 1 11
Q ss_pred ---CCcEEEEEEcCCCCCCCcccCCCCcccc-------eEEecCCCHHHHHH----HHHHHHhcC----CC---CCcccc
Q 003476 469 ---NSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGREA----ILKVHVSKK----EL---PLAKDI 527 (816)
Q Consensus 469 ---~~~ViVIaATN~pd~LDpALlRpGRFdr-------~I~v~~Pd~~eR~~----ILk~~l~~~----~l---~l~~dv 527 (816)
..++.+|++||..- ..+.+.|+|.. .+.+..|...+|.+ ++..++.+. +. .+.++
T Consensus 273 ~~~~~~~rii~~t~~~l---~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~- 348 (457)
T PRK11361 273 QTIKVDIRIIAATNRDL---QAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPM- 348 (457)
T ss_pred ceeeeceEEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHH-
Confidence 23578999998641 12333344433 56777888887753 333333321 11 12222
Q ss_pred CHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHH
Q 003476 528 DLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI 569 (816)
Q Consensus 528 dl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~~~~It~~d~~ 569 (816)
.++.|.......+.++|++++++|+..+ ....|+.+|+.
T Consensus 349 a~~~L~~~~wpgNv~eL~~~~~~~~~~~---~~~~i~~~~l~ 387 (457)
T PRK11361 349 AMSLLTAWSWPGNIRELSNVIERAVVMN---SGPIIFSEDLP 387 (457)
T ss_pred HHHHHHcCCCCCcHHHHHHHHHHHHHhC---CCCcccHHHCh
Confidence 3556666666668899999999987654 34467766654
No 217
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.66 E-value=6.8e-07 Score=100.75 Aligned_cols=204 Identities=21% Similarity=0.251 Sum_probs=128.0
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC-----CcEEEeechhhHH----
Q 003476 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSASEFVE---- 403 (816)
Q Consensus 333 DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elg-----vpfi~is~s~~~~---- 403 (816)
.+.|.+.....+++++..- +...-+..+.+.|-||||||.+...+-.... ...++++|..+.+
T Consensus 151 ~l~gRe~e~~~v~~F~~~h--------le~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ai 222 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLH--------LELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAI 222 (529)
T ss_pred CccchHHHHHHHHHHHHhh--------hhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHH
Confidence 4677787777766655432 2245567799999999999999987755432 2347777764322
Q ss_pred ------HH----hhcch-HHHHHHHHHH-Hhc-CCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCC
Q 003476 404 ------LY----VGMGA-SRVRDLFARA-KKE-APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNS 470 (816)
Q Consensus 404 ------~~----vG~~~-~~vr~lF~~A-~~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~ 470 (816)
.+ .+.+. ......|..- ... .+-|+++||+|.|....+. ++..|. ++.. .++.
T Consensus 223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~------------vLy~lF-ewp~-lp~s 288 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQT------------VLYTLF-EWPK-LPNS 288 (529)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccc------------eeeeeh-hccc-CCcc
Confidence 11 11111 2223334332 222 3679999999999855432 222222 2222 2357
Q ss_pred cEEEEEEcCCCCCCCcccCC----CCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHH-
Q 003476 471 AVIVLGATNRSDVLDPALRR----PGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLA- 545 (816)
Q Consensus 471 ~ViVIaATN~pd~LDpALlR----pGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~- 545 (816)
++++|+.+|..|.=|..|.| .+--...+.|++++.++..+||...+........-+..++..|+...|.|| |++
T Consensus 289 r~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlRk 367 (529)
T KOG2227|consen 289 RIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLRK 367 (529)
T ss_pred eeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHHH
Confidence 89999999988766655522 222346889999999999999999987653322223346677888888887 454
Q ss_pred --HHHHHHHHHHHHhC
Q 003476 546 --NLVNEAALLAGRLN 559 (816)
Q Consensus 546 --~LvneAa~~A~r~~ 559 (816)
.+|+.|..+|..+.
T Consensus 368 aLdv~R~aiEI~E~e~ 383 (529)
T KOG2227|consen 368 ALDVCRRAIEIAEIEK 383 (529)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 55666777776544
No 218
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.62 E-value=5.7e-07 Score=105.26 Aligned_cols=195 Identities=18% Similarity=0.294 Sum_probs=124.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc----------CCcEEEeechhhHH---HHh-------hcc------hHHHHHHHHHH
Q 003476 367 GVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCSASEFVE---LYV-------GMG------ASRVRDLFARA 420 (816)
Q Consensus 367 GVLL~GPPGTGKT~LAkALA~el----------gvpfi~is~s~~~~---~~v-------G~~------~~~vr~lF~~A 420 (816)
.+++.|-||||||.+++.+-.++ ..+|+.+++-.+.+ .|. |.. ...+..-|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 68899999999999999998755 35677887755543 221 211 12222333311
Q ss_pred -HhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccC--CCCccc-c
Q 003476 421 -KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALR--RPGRFD-R 496 (816)
Q Consensus 421 -~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALl--RpGRFd-r 496 (816)
-...+|||+|||+|.|....+ .++..++..-- .+++.++||+..|..|....-|. -..|++ +
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~Q------------dVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~t 569 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRSQ------------DVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSSRLGLT 569 (767)
T ss_pred CCCCCCEEEEeccHHHHhcccH------------HHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhhhccce
Confidence 134578999999999986543 35555555532 44678888888887653322221 011433 4
Q ss_pred eEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCH--HHHHHHHHHHHHHHHHhCC-------ccccHHH
Q 003476 497 VVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG--ADLANLVNEAALLAGRLNK-------VVVEKID 567 (816)
Q Consensus 497 ~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sg--aDL~~LvneAa~~A~r~~~-------~~It~~d 567 (816)
.|.|.+++..+.++|+...+.... .+..+ ..+.+|+.-...|| +-...+|++|+..|..+.. ..|+..|
T Consensus 570 Ri~F~pYth~qLq~Ii~~RL~~~~-~f~~~-aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~ 647 (767)
T KOG1514|consen 570 RICFQPYTHEQLQEIISARLKGLD-AFENK-AIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILH 647 (767)
T ss_pred eeecCCCCHHHHHHHHHHhhcchh-hcchh-HHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccccceeehHH
Confidence 789999999999999999886542 12222 23334444433343 4556788999988877655 5578888
Q ss_pred HHHHHHHHHc
Q 003476 568 FIHAVERSIA 577 (816)
Q Consensus 568 ~~~Al~r~i~ 577 (816)
+.+|+...+.
T Consensus 648 v~~Ai~em~~ 657 (767)
T KOG1514|consen 648 VMEAINEMLA 657 (767)
T ss_pred HHHHHHHHhh
Confidence 8888876554
No 219
>PRK06526 transposase; Provisional
Probab=98.60 E-value=1.2e-07 Score=101.43 Aligned_cols=101 Identities=21% Similarity=0.311 Sum_probs=64.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHHhhc-chHHHHHHHHHHHhcCCEEEEEcCccchhhc
Q 003476 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM-GASRVRDLFARAKKEAPSIIFIDEIDAVAKS 439 (816)
Q Consensus 364 ~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~~~vG~-~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~ 439 (816)
.+.+++|+||||||||+||.+++.++ |..+..++..++++..... ....+...+... ..+.+|+|||++.+..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~- 173 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPF- 173 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCC-
Confidence 35689999999999999999998875 7777777888777654211 111223333332 3456999999987642
Q ss_pred cCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCC
Q 003476 440 RDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (816)
Q Consensus 440 r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~p 481 (816)
+......+.+++..... +. .+|.+||.+
T Consensus 174 ---------~~~~~~~L~~li~~r~~---~~--s~IitSn~~ 201 (254)
T PRK06526 174 ---------EPEAANLFFQLVSSRYE---RA--SLIVTSNKP 201 (254)
T ss_pred ---------CHHHHHHHHHHHHHHHh---cC--CEEEEcCCC
Confidence 22233455566654321 12 366688875
No 220
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=3.2e-07 Score=101.81 Aligned_cols=133 Identities=17% Similarity=0.282 Sum_probs=94.8
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-------EEEe-ech--------hhHHHHh-----hcchHHHHHHHHHH
Q 003476 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC-SAS--------EFVELYV-----GMGASRVRDLFARA 420 (816)
Q Consensus 362 ~~~pkGVLL~GPPGTGKT~LAkALA~elgvp-------fi~i-s~s--------~~~~~~v-----G~~~~~vr~lF~~A 420 (816)
.+.|..+||+||+|+||+++|.++|..+-+. +=.+ +|. |+..... .-+...+|++.+.+
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~ 100 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKL 100 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHH
Confidence 5678899999999999999999999976431 1111 011 1100000 12345677766655
Q ss_pred Hh----cCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccc
Q 003476 421 KK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDR 496 (816)
Q Consensus 421 ~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr 496 (816)
.. ..-.|++||++|.+.. +.-|.||..|+ ++..++++|..|+.++.|.|.+++ |..
T Consensus 101 ~~~~~~g~~kV~iI~~ae~m~~---------------~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTIrS--RCq- 160 (334)
T PRK07993 101 YEHARLGGAKVVWLPDAALLTD---------------AAANALLKTLE--EPPENTWFFLACREPARLLATLRS--RCR- 160 (334)
T ss_pred hhccccCCceEEEEcchHhhCH---------------HHHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--ccc-
Confidence 43 2345999999999853 45699999998 566788999999999999999998 543
Q ss_pred eEEecCCCHHHHHHHHHH
Q 003476 497 VVMVETPDKIGREAILKV 514 (816)
Q Consensus 497 ~I~v~~Pd~~eR~~ILk~ 514 (816)
.+.+++|+.++..+.|..
T Consensus 161 ~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 161 LHYLAPPPEQYALTWLSR 178 (334)
T ss_pred cccCCCCCHHHHHHHHHH
Confidence 689999998887776654
No 221
>PRK08181 transposase; Validated
Probab=98.59 E-value=2.7e-07 Score=99.41 Aligned_cols=100 Identities=19% Similarity=0.280 Sum_probs=65.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHHhhc-chHHHHHHHHHHHhcCCEEEEEcCccchhhcc
Q 003476 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM-GASRVRDLFARAKKEAPSIIFIDEIDAVAKSR 440 (816)
Q Consensus 365 pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~~~vG~-~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r 440 (816)
..+++|+||||||||+||.|++.++ |..++.++..++++.+... ........++... .+.+|+|||++.+..
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~~-- 181 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVTK-- 181 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccccC--
Confidence 4579999999999999999998754 7888888988888754221 1122334444332 456999999987642
Q ss_pred CCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCC
Q 003476 441 DGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (816)
Q Consensus 441 ~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~p 481 (816)
++.....+.++++...+ +. -+|.|||.+
T Consensus 182 --------~~~~~~~Lf~lin~R~~---~~--s~IiTSN~~ 209 (269)
T PRK08181 182 --------DQAETSVLFELISARYE---RR--SILITANQP 209 (269)
T ss_pred --------CHHHHHHHHHHHHHHHh---CC--CEEEEcCCC
Confidence 23334455666664421 12 356678765
No 222
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.55 E-value=1.2e-07 Score=102.46 Aligned_cols=166 Identities=20% Similarity=0.217 Sum_probs=111.3
Q ss_pred cccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhh
Q 003476 322 VSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (816)
Q Consensus 322 ~~~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~ 401 (816)
..+.+++-++.||++++++...+.++.+.-+ .| ++|+|||||||||....+.|..+..|.=. .+-+
T Consensus 31 wvekyrP~~l~dv~~~~ei~st~~~~~~~~~-----------lP-h~L~YgPPGtGktsti~a~a~~ly~~~~~--~~m~ 96 (360)
T KOG0990|consen 31 WVEKYRPPFLGIVIKQEPIWSTENRYSGMPG-----------LP-HLLFYGPPGTGKTSTILANARDFYSPHPT--TSML 96 (360)
T ss_pred CccCCCCchhhhHhcCCchhhHHHHhccCCC-----------CC-cccccCCCCCCCCCchhhhhhhhcCCCCc--hhHH
Confidence 3567788899999999999888877643322 23 69999999999999999999998775111 1112
Q ss_pred HHHHh----hcch-HHHHHHHHHHHh-------cCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCC
Q 003476 402 VELYV----GMGA-SRVRDLFARAKK-------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN 469 (816)
Q Consensus 402 ~~~~v----G~~~-~~vr~lF~~A~~-------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~ 469 (816)
.+.-. |-.. ..-...|..++. ..+..+++||.|++....+ |+|-..++.+..+
T Consensus 97 lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQ---------------nALRRviek~t~n 161 (360)
T KOG0990|consen 97 LELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQ---------------NALRRVIEKYTAN 161 (360)
T ss_pred HHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHH---------------HHHHHHHHHhccc
Confidence 22111 1111 111234555542 2678999999999976543 4444556655554
Q ss_pred CcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCC
Q 003476 470 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKEL 521 (816)
Q Consensus 470 ~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l 521 (816)
. -++..+|.+..+.|++++ ||. .+.+.+-+.......+.+++.....
T Consensus 162 ~--rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~ 208 (360)
T KOG0990|consen 162 T--RFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQK 208 (360)
T ss_pred e--EEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchh
Confidence 4 444668999999999987 665 4567777777777788888766543
No 223
>PRK15115 response regulator GlrR; Provisional
Probab=98.55 E-value=5.4e-07 Score=102.87 Aligned_cols=179 Identities=24% Similarity=0.367 Sum_probs=106.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHHh-----hcch-------HHHHHHHHHHHhcCCEEEEE
Q 003476 366 RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV-----GMGA-------SRVRDLFARAKKEAPSIIFI 430 (816)
Q Consensus 366 kGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~~~v-----G~~~-------~~vr~lF~~A~~~aP~ILfI 430 (816)
..++|+|++|||||++|+++.... +.||+.++|..+.+... |... .....+|+.| ...+|||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l 234 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAA---EGGTLFL 234 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEEC---CCCEEEE
Confidence 459999999999999999998764 57999999986633211 1100 0001122222 2459999
Q ss_pred cCccchhhccCCccccccchHHHHHHHHHHhhccC-----CCC----CCcEEEEEEcCCCCCCCcccCCCCcccc-----
Q 003476 431 DEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG-----FDS----NSAVIVLGATNRSDVLDPALRRPGRFDR----- 496 (816)
Q Consensus 431 DEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg-----~~~----~~~ViVIaATN~pd~LDpALlRpGRFdr----- 496 (816)
||||.+....+ ..|+..++. ... ...+.+|++|+.. ++..+ ..|+|..
T Consensus 235 ~~i~~l~~~~q---------------~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~-~~~~f~~~l~~~ 296 (444)
T PRK15115 235 DEIGDMPAPLQ---------------VKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAM-ARGEFREDLYYR 296 (444)
T ss_pred EccccCCHHHH---------------HHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHH-HcCCccHHHHHh
Confidence 99999875432 223333221 111 1367889999863 33332 2345521
Q ss_pred --eEEecCCCHHHHHH----HHHHHHhc----CCCC---CccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccc
Q 003476 497 --VVMVETPDKIGREA----ILKVHVSK----KELP---LAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVV 563 (816)
Q Consensus 497 --~I~v~~Pd~~eR~~----ILk~~l~~----~~l~---l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~~~~I 563 (816)
.+.+..|...+|.+ +++.++.. .+.+ +.++ .+..|......-+.++|+++++.|+..+ ....|
T Consensus 297 l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~-a~~~L~~~~WpgNvreL~~~i~~~~~~~---~~~~i 372 (444)
T PRK15115 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTD-AMKRLMTASWPGNVRQLVNVIEQCVALT---SSPVI 372 (444)
T ss_pred hceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHH-HHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcc
Confidence 46777888888752 33444432 1111 2222 3666777776668899999999987654 34456
Q ss_pred cHHHHH
Q 003476 564 EKIDFI 569 (816)
Q Consensus 564 t~~d~~ 569 (816)
+.+++.
T Consensus 373 ~~~~l~ 378 (444)
T PRK15115 373 SDALVE 378 (444)
T ss_pred Chhhhh
Confidence 666554
No 224
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.55 E-value=1.3e-06 Score=101.94 Aligned_cols=209 Identities=18% Similarity=0.220 Sum_probs=117.8
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEee-chhh
Q 003476 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS-ASEF 401 (816)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is-~s~~ 401 (816)
.+...+.+.+||+-...-.++++..++... .+....+-+||+||||||||++++.||+++|..+..-. ...+
T Consensus 10 ~~ky~P~~~~eLavhkkKv~eV~~wl~~~~-------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~ 82 (519)
T PF03215_consen 10 VEKYAPKTLDELAVHKKKVEEVRSWLEEMF-------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSF 82 (519)
T ss_pred chhcCCCCHHHhhccHHHHHHHHHHHHHHh-------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCc
Confidence 355677889999998765555555444311 12334456889999999999999999999987766532 1111
Q ss_pred H------HHHhhc---------chHHHHHH-HHHHHh-----------cCCEEEEEcCccchhhccCCccccccchHHHH
Q 003476 402 V------ELYVGM---------GASRVRDL-FARAKK-----------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQ 454 (816)
Q Consensus 402 ~------~~~vG~---------~~~~vr~l-F~~A~~-----------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~ 454 (816)
. ..|.+. ......++ +..++. ..+.||+|||+-.+.... ......
T Consensus 83 ~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~--------~~~f~~ 154 (519)
T PF03215_consen 83 RESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD--------TSRFRE 154 (519)
T ss_pred cccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh--------HHHHHH
Confidence 0 011111 01112222 122221 246799999998664221 122333
Q ss_pred HHHHHHhhccCCCCCC-cEEEEEE-c------CCC--------CCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhc
Q 003476 455 TLNQLLTEMDGFDSNS-AVIVLGA-T------NRS--------DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK 518 (816)
Q Consensus 455 ~Ln~LL~emDg~~~~~-~ViVIaA-T------N~p--------d~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~ 518 (816)
.|.+++.. ... ++|+|.+ + |.. ..+++.++...+. .+|.|.+-...-..+.|+..+..
T Consensus 155 ~L~~~l~~-----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~ 228 (519)
T PF03215_consen 155 ALRQYLRS-----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKK 228 (519)
T ss_pred HHHHHHHc-----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHH
Confidence 33333332 122 6666666 1 111 1456666554344 37888887776666666665554
Q ss_pred C-----CC-CCccccC-HHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 003476 519 K-----EL-PLAKDID-LGDIASMTTGFTGADLANLVNEAALLAG 556 (816)
Q Consensus 519 ~-----~l-~l~~dvd-l~~LA~~t~G~SgaDL~~LvneAa~~A~ 556 (816)
. +. ....... ++.|+..+. +||+.+++.-...+.
T Consensus 229 E~~~~~~~~~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 229 EARSSSGKNKVPDKQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred HhhhhcCCccCCChHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 3 11 1121122 566666544 599999998877776
No 225
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.54 E-value=4.3e-07 Score=107.36 Aligned_cols=191 Identities=14% Similarity=0.111 Sum_probs=128.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcC--CcEEEeechhhHHHHhhcch--H--------HHHHHHHHHHhcCCEEEEEcCc
Q 003476 366 RGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVELYVGMGA--S--------RVRDLFARAKKEAPSIIFIDEI 433 (816)
Q Consensus 366 kGVLL~GPPGTGKT~LAkALA~elg--vpfi~is~s~~~~~~vG~~~--~--------~vr~lF~~A~~~aP~ILfIDEI 433 (816)
.||||.|++||+||+++++++.-+. .||+.+..+--.+..+|... . .-..++..|.. .||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~---GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADG---GVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccC---CEEEecCc
Confidence 5899999999999999999999874 58988776554555555431 0 01122333322 49999999
Q ss_pred cchhhccCCccccccchHHHHHHHHHHhhccCC-----------CCCCcEEEEEEcCCC---CCCCcccCCCCcccceEE
Q 003476 434 DAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----------DSNSAVIVLGATNRS---DVLDPALRRPGRFDRVVM 499 (816)
Q Consensus 434 DaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~-----------~~~~~ViVIaATN~p---d~LDpALlRpGRFdr~I~ 499 (816)
..+.. .+++.|+.-|+.- .-...+++|++-|.. ..|.++++. ||+.+|.
T Consensus 103 n~~~~---------------~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~ 165 (584)
T PRK13406 103 ERLEP---------------GTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLD 165 (584)
T ss_pred ccCCH---------------HHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEE
Confidence 87642 4677788877632 112467888874432 458899998 9999999
Q ss_pred ecCCCHHHH-------HHHHHHHHhcCCCCCccccCHHHHHh--hCCCC-CHHHHHHHHHHHHHHHHHhCCccccHHHHH
Q 003476 500 VETPDKIGR-------EAILKVHVSKKELPLAKDIDLGDIAS--MTTGF-TGADLANLVNEAALLAGRLNKVVVEKIDFI 569 (816)
Q Consensus 500 v~~Pd~~eR-------~~ILk~~l~~~~l~l~~dvdl~~LA~--~t~G~-SgaDL~~LvneAa~~A~r~~~~~It~~d~~ 569 (816)
+..|+..+. .+|.+..-.-.++.+.++ .+..++. ...|. |.+....+++-|..+|..+++..|+.+|+.
T Consensus 166 v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~-~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~ 244 (584)
T PRK13406 166 LDGLALRDAREIPIDADDIAAARARLPAVGPPPE-AIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLA 244 (584)
T ss_pred cCCCChHHhcccCCCHHHHHHHHHHHccCCCCHH-HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 998876542 123322221123334333 2333332 12355 777788899999999999999999999999
Q ss_pred HHHHHHHc
Q 003476 570 HAVERSIA 577 (816)
Q Consensus 570 ~Al~r~i~ 577 (816)
+|+.-++.
T Consensus 245 ~Aa~lvL~ 252 (584)
T PRK13406 245 LAARLVLA 252 (584)
T ss_pred HHHHHHHH
Confidence 99987764
No 226
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.54 E-value=5.1e-07 Score=92.28 Aligned_cols=166 Identities=27% Similarity=0.333 Sum_probs=86.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCC---cEEEeec-h-hh---HHHH-------------h-----------------
Q 003476 365 PRGVLLVGLPGTGKTLLAKAVAGEAEV---PFISCSA-S-EF---VELY-------------V----------------- 406 (816)
Q Consensus 365 pkGVLL~GPPGTGKT~LAkALA~elgv---pfi~is~-s-~~---~~~~-------------v----------------- 406 (816)
...++|+||.|+|||+|++.+.....- ..+.+.. . .. ...+ .
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 457999999999999999999998732 1111111 0 00 0000 0
Q ss_pred hcchHHHHHHHHHHHhc-CCEEEEEcCccchh-hccCCccccccchHHHHHHHHHHhhccCCCCCCcE-EEEEEcCCC--
Q 003476 407 GMGASRVRDLFARAKKE-APSIIFIDEIDAVA-KSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAV-IVLGATNRS-- 481 (816)
Q Consensus 407 G~~~~~vr~lF~~A~~~-aP~ILfIDEIDaL~-~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~V-iVIaATN~p-- 481 (816)
......+..+++..... ...||+|||+|.+. .... ....+..|...++......++ +|+++++..
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~ 169 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE----------DKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLM 169 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT----------THHHHHHHHHHHHH----TTEEEEEEESSHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc----------hHHHHHHHHHHHhhccccCCceEEEECCchHHH
Confidence 11234456666665543 34899999999997 2211 123334444444432233343 444444421
Q ss_pred -C--CCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCC-ccccCHHHHHhhCCCCCHHHHH
Q 003476 482 -D--VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPL-AKDIDLGDIASMTTGFTGADLA 545 (816)
Q Consensus 482 -d--~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l-~~dvdl~~LA~~t~G~SgaDL~ 545 (816)
+ .-...+. +|+.. +.+++.+.++..++++..+... ..+ .++.+++.+...+.| .|+-|.
T Consensus 170 ~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG-~P~~l~ 232 (234)
T PF01637_consen 170 EEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGG-NPRYLQ 232 (234)
T ss_dssp HHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT--HHHHH
T ss_pred HHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCC-CHHHHh
Confidence 1 1122233 37775 9999999999999999987664 333 234467778888877 455554
No 227
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.52 E-value=2.1e-08 Score=96.17 Aligned_cols=111 Identities=28% Similarity=0.378 Sum_probs=55.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeech-hhHH-HHhhcchHHHH-HHHHHHHh-cCCEEEEEcCccchhhccCC
Q 003476 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS-EFVE-LYVGMGASRVR-DLFARAKK-EAPSIIFIDEIDAVAKSRDG 442 (816)
Q Consensus 367 GVLL~GPPGTGKT~LAkALA~elgvpfi~is~s-~~~~-~~vG~~~~~vr-~lF~~A~~-~aP~ILfIDEIDaL~~~r~~ 442 (816)
+|||.|+||+|||++|+++|+.++..|..+.+. ++.- ...|...-... ..|.-.+. .-..|+++|||.....+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrappk--- 77 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAPPK--- 77 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-HH---
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCCHH---
Confidence 489999999999999999999999999988764 3321 22222100000 00000000 00139999999876543
Q ss_pred ccccccchHHHHHHHHHHhhccC---------CCCCCcEEEEEEcCCCC-----CCCcccCCCCcc
Q 003476 443 RFRIVSNDEREQTLNQLLTEMDG---------FDSNSAVIVLGATNRSD-----VLDPALRRPGRF 494 (816)
Q Consensus 443 ~~~~~~~~e~~~~Ln~LL~emDg---------~~~~~~ViVIaATN~pd-----~LDpALlRpGRF 494 (816)
+-+.||..|.. +.-...++||||-|+.+ .|+.+++. ||
T Consensus 78 ------------tQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 78 ------------TQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp ------------HHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred ------------HHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 33455555431 22345689999999865 66777776 65
No 228
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.50 E-value=5.5e-07 Score=99.22 Aligned_cols=133 Identities=20% Similarity=0.308 Sum_probs=92.8
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE----EEeechhhHH------H-Hh-------h------cchHHHHHHH
Q 003476 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF----ISCSASEFVE------L-YV-------G------MGASRVRDLF 417 (816)
Q Consensus 362 ~~~pkGVLL~GPPGTGKT~LAkALA~elgvpf----i~is~s~~~~------~-~v-------G------~~~~~vr~lF 417 (816)
.+.|..+||+||+|+||+++|.++|..+-+.- -.+.+-.++. . ++ | -+...||++.
T Consensus 23 ~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~ 102 (319)
T PRK08769 23 GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREIS 102 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHH
Confidence 46788899999999999999999998764321 0011111111 0 00 1 1245667776
Q ss_pred HHHHhc----CCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCc
Q 003476 418 ARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGR 493 (816)
Q Consensus 418 ~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGR 493 (816)
+.+... .-.|++||++|.+.. ..-|.||..|+ ++..++++|..|+.++.|-|.+++ |
T Consensus 103 ~~~~~~p~~g~~kV~iI~~ae~m~~---------------~AaNaLLKtLE--EPp~~~~fiL~~~~~~~lLpTIrS--R 163 (319)
T PRK08769 103 QKLALTPQYGIAQVVIVDPADAINR---------------AACNALLKTLE--EPSPGRYLWLISAQPARLPATIRS--R 163 (319)
T ss_pred HHHhhCcccCCcEEEEeccHhhhCH---------------HHHHHHHHHhh--CCCCCCeEEEEECChhhCchHHHh--h
Confidence 655432 235999999999853 45689999998 455677888889999999999998 6
Q ss_pred ccceEEecCCCHHHHHHHHHH
Q 003476 494 FDRVVMVETPDKIGREAILKV 514 (816)
Q Consensus 494 Fdr~I~v~~Pd~~eR~~ILk~ 514 (816)
. ..+.|..|+.++..+.|..
T Consensus 164 C-q~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 164 C-QRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred h-eEeeCCCcCHHHHHHHHHH
Confidence 4 4889999999887776653
No 229
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.50 E-value=8.8e-07 Score=94.75 Aligned_cols=73 Identities=23% Similarity=0.376 Sum_probs=50.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHHhhcch-HHHHHHHHHHHhcCCEEEEEcCccchh
Q 003476 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMGA-SRVRDLFARAKKEAPSIIFIDEIDAVA 437 (816)
Q Consensus 364 ~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~~~vG~~~-~~vr~lF~~A~~~aP~ILfIDEIDaL~ 437 (816)
.+.+++|+||||||||+||-|++.++ |+.+..++.++++...-..-. .....-+.... ....+|+|||+-...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l-~~~dlLIiDDlG~~~ 180 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL-KKVDLLIIDDIGYEP 180 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh-hcCCEEEEecccCcc
Confidence 45789999999999999999999876 789999999988764322111 11111122211 233599999997753
No 230
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.49 E-value=3.7e-07 Score=104.73 Aligned_cols=210 Identities=20% Similarity=0.262 Sum_probs=119.0
Q ss_pred cccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHH--
Q 003476 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY-- 405 (816)
Q Consensus 331 f~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~~~-- 405 (816)
+.+++|...+..++.+.+..+. .....+++.|.+||||+++|+++.... +.||+.++|..+.+..
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a----------~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLS----------RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHh----------CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 3468888877666655544332 223469999999999999999998764 5799999998663321
Q ss_pred ---hhcchHH-------HHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhcc--CCC----CC
Q 003476 406 ---VGMGASR-------VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD--GFD----SN 469 (816)
Q Consensus 406 ---vG~~~~~-------vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emD--g~~----~~ 469 (816)
.|..... ....|. ....+.|||||||.+....+ ..+..++..-. ... ..
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~ei~~l~~~~q------------~~ll~~l~~~~~~~~~~~~~~~ 267 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFE---QADGGTLFLDEIGDMPLDAQ------------TRLLRVLADGEFYRVGGRTPIK 267 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEE---ECCCCeEEEEchhhCCHHHH------------HHHHHHHhcCcEEECCCCceee
Confidence 1211000 001122 22356899999999864322 22233333211 001 12
Q ss_pred CcEEEEEEcCCCC-------CCCcccCCCCcccceEEecCCCHHHH----HHHHHHHHhcC----CC---CCccccCHHH
Q 003476 470 SAVIVLGATNRSD-------VLDPALRRPGRFDRVVMVETPDKIGR----EAILKVHVSKK----EL---PLAKDIDLGD 531 (816)
Q Consensus 470 ~~ViVIaATN~pd-------~LDpALlRpGRFdr~I~v~~Pd~~eR----~~ILk~~l~~~----~l---~l~~dvdl~~ 531 (816)
.++.||++|+..- .+.+.|.. |+. .+.+..|...+| ..++..++... +. .+.++ .+..
T Consensus 268 ~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~-a~~~ 343 (463)
T TIGR01818 268 VDVRIVAATHQNLEALVRQGKFREDLFH--RLN-VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPE-ALER 343 (463)
T ss_pred eeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhC-cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHH-HHHH
Confidence 3567888887641 22223322 332 345666665544 34455444332 11 12222 3555
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003476 532 IASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (816)
Q Consensus 532 LA~~t~G~SgaDL~~LvneAa~~A~r~~~~~It~~d~~~Al 572 (816)
|.....--+.++|++++..|+..+. ...|+.+|+...+
T Consensus 344 L~~~~wpgNvreL~~~~~~~~~~~~---~~~i~~~~l~~~~ 381 (463)
T TIGR01818 344 LKQLRWPGNVRQLENLCRWLTVMAS---GDEVLVSDLPAEL 381 (463)
T ss_pred HHhCCCCChHHHHHHHHHHHHHhCC---CCcccHHhchHHH
Confidence 5666555567999999999987663 3567777765444
No 231
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.48 E-value=8.1e-07 Score=98.36 Aligned_cols=100 Identities=21% Similarity=0.309 Sum_probs=63.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHHhhc---chHHHHHHHHHHHhcCCEEEEEcCccchhhc
Q 003476 366 RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM---GASRVRDLFARAKKEAPSIIFIDEIDAVAKS 439 (816)
Q Consensus 366 kGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~~~vG~---~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~ 439 (816)
.+++|+||||||||+||.|+|.++ |..++.++..++...+... ........++... ...+|+|||+....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~-- 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEK-- 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCC--
Confidence 789999999999999999999986 7888999998887754221 1111122233332 34599999997653
Q ss_pred cCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCC
Q 003476 440 RDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (816)
Q Consensus 440 r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~p 481 (816)
.++.....+..+++..- .+ +--+|.|||.+
T Consensus 260 --------~t~~~~~~Lf~iin~R~---~~-~k~tIiTSNl~ 289 (329)
T PRK06835 260 --------ITEFSKSELFNLINKRL---LR-QKKMIISTNLS 289 (329)
T ss_pred --------CCHHHHHHHHHHHHHHH---HC-CCCEEEECCCC
Confidence 22333344445555432 11 12356677764
No 232
>PRK06921 hypothetical protein; Provisional
Probab=98.47 E-value=1.3e-06 Score=94.00 Aligned_cols=69 Identities=26% Similarity=0.330 Sum_probs=47.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc----CCcEEEeechhhHHHHhhcchHHHHHHHHHHHhcCCEEEEEcCccc
Q 003476 364 PPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDA 435 (816)
Q Consensus 364 ~pkGVLL~GPPGTGKT~LAkALA~el----gvpfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDa 435 (816)
...+++|+||||||||+|+.|+|+++ +..+++++..+++...... .....+.++.. ....+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEecccc
Confidence 45789999999999999999999975 6778888877765543221 11122222322 2346999999954
No 233
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=1.2e-06 Score=96.62 Aligned_cols=133 Identities=20% Similarity=0.266 Sum_probs=93.4
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc------EEEe-ec--------hhhHHHHh---h--cchHHHHHHHHHHH
Q 003476 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------FISC-SA--------SEFVELYV---G--MGASRVRDLFARAK 421 (816)
Q Consensus 362 ~~~pkGVLL~GPPGTGKT~LAkALA~elgvp------fi~i-s~--------s~~~~~~v---G--~~~~~vr~lF~~A~ 421 (816)
.+.|..+||+||.|+||+.+|+++|..+-+. +=.+ +| .++..... | -+...+|++.+.+.
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~ 101 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQ 101 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHh
Confidence 5678889999999999999999999976431 1000 00 01100000 1 12356677655543
Q ss_pred hc----CCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccce
Q 003476 422 KE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRV 497 (816)
Q Consensus 422 ~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~ 497 (816)
.. .-.|++||++|.+.. ..-|.||..++ ++..++++|..|+.++.|-|.+++ |. ..
T Consensus 102 ~~~~~~~~kV~iI~~ae~m~~---------------~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTI~S--RC-q~ 161 (319)
T PRK06090 102 ESSQLNGYRLFVIEPADAMNE---------------SASNALLKTLE--EPAPNCLFLLVTHNQKRLLPTIVS--RC-QQ 161 (319)
T ss_pred hCcccCCceEEEecchhhhCH---------------HHHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--cc-ee
Confidence 32 235999999999853 45589999998 466778999999999999999988 53 48
Q ss_pred EEecCCCHHHHHHHHHH
Q 003476 498 VMVETPDKIGREAILKV 514 (816)
Q Consensus 498 I~v~~Pd~~eR~~ILk~ 514 (816)
+.|+.|+.++..+.|..
T Consensus 162 ~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 162 WVVTPPSTAQAMQWLKG 178 (319)
T ss_pred EeCCCCCHHHHHHHHHH
Confidence 89999998888776653
No 234
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.44 E-value=5e-07 Score=102.80 Aligned_cols=202 Identities=21% Similarity=0.291 Sum_probs=116.1
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHHh---
Q 003476 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV--- 406 (816)
Q Consensus 333 DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~~~v--- 406 (816)
.++|.......+.+-+..+. .....++++|.+||||+++|+++.... +.||+.++|+.+.+...
T Consensus 140 ~lig~s~~~~~~~~~i~~~~----------~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~ 209 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVA----------PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESE 209 (441)
T ss_pred ceEecCHHHHHHHHHHhhcc----------CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHH
Confidence 46666665555544333322 234569999999999999999997654 57999999986543211
Q ss_pred --hcchHH-------HHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCC---------C
Q 003476 407 --GMGASR-------VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------S 468 (816)
Q Consensus 407 --G~~~~~-------vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~---------~ 468 (816)
|..... ...+|.. ...++|||||||.+....+ ..|+..++.-. .
T Consensus 210 lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ldei~~l~~~~q---------------~~l~~~l~~~~~~~~~~~~~~ 271 (441)
T PRK10365 210 LFGHEKGAFTGADKRREGRFVE---ADGGTLFLDEIGDISPMMQ---------------VRLLRAIQEREVQRVGSNQTI 271 (441)
T ss_pred hcCCCCCCcCCCCcCCCCceeE---CCCCEEEEeccccCCHHHH---------------HHHHHHHccCcEEeCCCCcee
Confidence 111000 0111222 2456999999999875432 23333332110 0
Q ss_pred CCcEEEEEEcCCCCCCCcccCCCCcccc-------eEEecCCCHHHHH----HHHHHHHhcC----CC---CCccccCHH
Q 003476 469 NSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGRE----AILKVHVSKK----EL---PLAKDIDLG 530 (816)
Q Consensus 469 ~~~ViVIaATN~pd~LDpALlRpGRFdr-------~I~v~~Pd~~eR~----~ILk~~l~~~----~l---~l~~dvdl~ 530 (816)
...+.+|++|+.+- ..+..+|+|.. .+.+..|...+|. .+++.++.+. +. .+.++ .+.
T Consensus 272 ~~~~rii~~t~~~~---~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~-a~~ 347 (441)
T PRK10365 272 SVDVRLIAATHRDL---AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQ-AMD 347 (441)
T ss_pred eeceEEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHH-HHH
Confidence 12467888887642 22334456543 5677788887764 3444444431 11 12222 355
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHH
Q 003476 531 DIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI 569 (816)
Q Consensus 531 ~LA~~t~G~SgaDL~~LvneAa~~A~r~~~~~It~~d~~ 569 (816)
.|......-+.++|.++++.|+..+ ....|+.+++.
T Consensus 348 ~L~~~~wpgN~reL~~~~~~~~~~~---~~~~i~~~~l~ 383 (441)
T PRK10365 348 LLIHYDWPGNIRELENAVERAVVLL---TGEYISERELP 383 (441)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHhC---CCCccchHhCc
Confidence 5666665557789999998887654 33456666553
No 235
>PRK09183 transposase/IS protein; Provisional
Probab=98.44 E-value=8.2e-07 Score=95.22 Aligned_cols=73 Identities=27% Similarity=0.379 Sum_probs=51.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHHhh-cchHHHHHHHHHHHhcCCEEEEEcCccchh
Q 003476 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVG-MGASRVRDLFARAKKEAPSIIFIDEIDAVA 437 (816)
Q Consensus 364 ~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~~~vG-~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~ 437 (816)
...+++|+||||||||+||.+++.++ |..+..+++.++...+.. .....+...+... ...+++++|||++.+.
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 35679999999999999999997654 777888888877754321 1112344455543 2456799999998753
No 236
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.42 E-value=1.1e-07 Score=91.76 Aligned_cols=81 Identities=30% Similarity=0.485 Sum_probs=55.2
Q ss_pred cCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC---CcEEEeechhhHHHHhhcchH
Q 003476 335 AGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEFVELYVGMGAS 411 (816)
Q Consensus 335 ~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elg---vpfi~is~s~~~~~~vG~~~~ 411 (816)
+|...+.+++++-++.+.. ....|||+|+|||||+++|+++....+ -||+.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~----------~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----------SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----------SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCCHHHHHHHHHHHHHhC----------CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 3566666666666655432 234699999999999999999988764 477777776532
Q ss_pred HHHHHHHHHHhcCCEEEEEcCccchhhc
Q 003476 412 RVRDLFARAKKEAPSIIFIDEIDAVAKS 439 (816)
Q Consensus 412 ~vr~lF~~A~~~aP~ILfIDEIDaL~~~ 439 (816)
.++++.+ ....|||+|||.+...
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L~~~ 84 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRLSPE 84 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS-HH
T ss_pred --HHHHHHc---CCCEEEECChHHCCHH
Confidence 3455555 4559999999998643
No 237
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.1e-06 Score=106.64 Aligned_cols=126 Identities=32% Similarity=0.356 Sum_probs=90.5
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCC-CCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH-----
Q 003476 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGA-RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE----- 403 (816)
Q Consensus 333 DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~-~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~----- 403 (816)
.|+|++++...+.+.|..-+..- +. .++-.+||.||.|+|||-||+|+|..+ .-.|+.+++++|.+
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl-----~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskli 637 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGL-----KDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLI 637 (898)
T ss_pred hccchHHHHHHHHHHHHhhhccc-----CCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhcc
Confidence 58999999988888876644311 11 355669999999999999999999976 46789999998766
Q ss_pred ----HHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCC---------CC
Q 003476 404 ----LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS---------NS 470 (816)
Q Consensus 404 ----~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~---------~~ 470 (816)
.|+|.. ..-.+.+..+...-|||+|||||.-- ..++|.|++.+|...- -.
T Consensus 638 gsp~gyvG~e--~gg~LteavrrrP~sVVLfdeIEkAh---------------~~v~n~llq~lD~GrltDs~Gr~Vd~k 700 (898)
T KOG1051|consen 638 GSPPGYVGKE--EGGQLTEAVKRRPYSVVLFEEIEKAH---------------PDVLNILLQLLDRGRLTDSHGREVDFK 700 (898)
T ss_pred CCCcccccch--hHHHHHHHHhcCCceEEEEechhhcC---------------HHHHHHHHHHHhcCccccCCCcEeecc
Confidence 233332 23455666666666899999999743 2356767777664421 14
Q ss_pred cEEEEEEcCC
Q 003476 471 AVIVLGATNR 480 (816)
Q Consensus 471 ~ViVIaATN~ 480 (816)
++|||+|+|.
T Consensus 701 N~I~IMTsn~ 710 (898)
T KOG1051|consen 701 NAIFIMTSNV 710 (898)
T ss_pred ceEEEEeccc
Confidence 6899999986
No 238
>PF13173 AAA_14: AAA domain
Probab=98.41 E-value=1.6e-06 Score=82.76 Aligned_cols=118 Identities=21% Similarity=0.251 Sum_probs=69.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcC--CcEEEeechhhHHHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCc
Q 003476 366 RGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGR 443 (816)
Q Consensus 366 kGVLL~GPPGTGKT~LAkALA~elg--vpfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~ 443 (816)
+.++|+||.|||||++++.++.... -.++.+++.+......... . +.+.+.......+++|||||++.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~i~iDEiq~~~------ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADP-D-LLEYFLELIKPGKKYIFIDEIQYLP------ 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhh-h-hHHHHHHhhccCCcEEEEehhhhhc------
Confidence 4589999999999999999999876 7778888776554221111 0 2233333222256799999998873
Q ss_pred cccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCC----CcccCCCCcccceEEecCCCHHH
Q 003476 444 FRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL----DPALRRPGRFDRVVMVETPDKIG 507 (816)
Q Consensus 444 ~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~L----DpALlRpGRFdr~I~v~~Pd~~e 507 (816)
.....+..+...- .++-||.|+.....+ ...+ +||.. .+.+.+.+..|
T Consensus 75 -------~~~~~lk~l~d~~------~~~~ii~tgS~~~~l~~~~~~~l--~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 75 -------DWEDALKFLVDNG------PNIKIILTGSSSSLLSKDIAESL--AGRVI-EIELYPLSFRE 126 (128)
T ss_pred -------cHHHHHHHHHHhc------cCceEEEEccchHHHhhcccccC--CCeEE-EEEECCCCHHH
Confidence 1234445544421 223333333322222 2223 46765 67777777665
No 239
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.40 E-value=5.4e-07 Score=91.38 Aligned_cols=72 Identities=28% Similarity=0.421 Sum_probs=49.3
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHHhhc-chHHHHHHHHHHHhcCCEEEEEcCccch
Q 003476 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM-GASRVRDLFARAKKEAPSIIFIDEIDAV 436 (816)
Q Consensus 363 ~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~~~vG~-~~~~vr~lF~~A~~~aP~ILfIDEIDaL 436 (816)
..+.|++|+||||||||+||.|++.++ |.++..++.+++++..-.. ......+.++... .+.+|+|||+...
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~ 120 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYE 120 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEeccccccee
Confidence 346789999999999999999999865 8899999999988754322 1122334454443 2359999998543
No 240
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=1.1e-06 Score=97.21 Aligned_cols=132 Identities=23% Similarity=0.317 Sum_probs=90.1
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCC--------c-----------------EEEeechhhHHHHhh-----cchH
Q 003476 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--------P-----------------FISCSASEFVELYVG-----MGAS 411 (816)
Q Consensus 362 ~~~pkGVLL~GPPGTGKT~LAkALA~elgv--------p-----------------fi~is~s~~~~~~vG-----~~~~ 411 (816)
.+.|..+||+||+|+|||++|+++|+.+.+ | |+.++...-. ...| -+..
T Consensus 18 ~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id 96 (325)
T PRK08699 18 ERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKID 96 (325)
T ss_pred CCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHH
Confidence 478889999999999999999999998643 1 1122110000 0001 1346
Q ss_pred HHHHHHHHHHh----cCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcc
Q 003476 412 RVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPA 487 (816)
Q Consensus 412 ~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpA 487 (816)
.+|++.+.+.. ....|++||++|.+.. +..|.|+..|+... .++.+|.+|+.++.+.+.
T Consensus 97 ~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~---------------~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~t 159 (325)
T PRK08699 97 AVREIIDNVYLTSVRGGLRVILIHPAESMNL---------------QAANSLLKVLEEPP--PQVVFLLVSHAADKVLPT 159 (325)
T ss_pred HHHHHHHHHhhCcccCCceEEEEechhhCCH---------------HHHHHHHHHHHhCc--CCCEEEEEeCChHhChHH
Confidence 67887777654 2235999999998853 23466777776543 346677788888899999
Q ss_pred cCCCCcccceEEecCCCHHHHHHHHHH
Q 003476 488 LRRPGRFDRVVMVETPDKIGREAILKV 514 (816)
Q Consensus 488 LlRpGRFdr~I~v~~Pd~~eR~~ILk~ 514 (816)
+.+ |. +.+.|++|+.++..+.|..
T Consensus 160 i~S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 160 IKS--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HHH--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 887 43 5888999999887776653
No 241
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.39 E-value=1.2e-06 Score=82.60 Aligned_cols=98 Identities=27% Similarity=0.401 Sum_probs=58.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc--------CCcEEEeechhhHH------H---Hhh------cchHHHHHHHHHH-
Q 003476 365 PRGVLLVGLPGTGKTLLAKAVAGEA--------EVPFISCSASEFVE------L---YVG------MGASRVRDLFARA- 420 (816)
Q Consensus 365 pkGVLL~GPPGTGKT~LAkALA~el--------gvpfi~is~s~~~~------~---~vG------~~~~~vr~lF~~A- 420 (816)
.+.++++||||+|||++++.++... ..+++.+++..... . ..+ .....+.+.+...
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 3568999999999999999999987 78888887664331 1 001 1223333334333
Q ss_pred HhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEc
Q 003476 421 KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (816)
Q Consensus 421 ~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaAT 478 (816)
......+|+|||+|.+. + ...++.|...++ ..+-.++++++.
T Consensus 84 ~~~~~~~lviDe~~~l~-~-------------~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-S-------------DEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHH-T-------------HHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcC-C-------------HHHHHHHHHHHh--CCCCeEEEEECh
Confidence 33334599999999974 1 345666666555 222334444443
No 242
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.29 E-value=4.2e-06 Score=97.72 Aligned_cols=133 Identities=30% Similarity=0.351 Sum_probs=72.2
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHHhhcchHH-----HHHHHHHHH---hcCCEEEEEcCcc
Q 003476 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASR-----VRDLFARAK---KEAPSIIFIDEID 434 (816)
Q Consensus 363 ~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~~vG~~~~~-----vr~lF~~A~---~~aP~ILfIDEID 434 (816)
+..-+|||+|.||||||-+.+.+++-+..-.+ .|+.. +.-+|.++.. -+++.-+.- ...-.|.+|||+|
T Consensus 460 R~~INILL~GDPGtsKSqlLqyv~~l~pRg~y-TSGkG--sSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFD 536 (804)
T KOG0478|consen 460 RGDINILLVGDPGTSKSQLLQYCHRLLPRGVY-TSGKG--SSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFD 536 (804)
T ss_pred cccceEEEecCCCcCHHHHHHHHHHhCCccee-ecCCc--cchhcceeeEEecCccceeeeecCcEEEcCCceEEchhhh
Confidence 34467999999999999999999987644332 22110 0011111110 111111111 1123489999999
Q ss_pred chhhccCCccccccchHHH-HHHHHHHhh-ccCCCCCCcEEEEEEcCCCC-------------CCCcccCCCCcccceE-
Q 003476 435 AVAKSRDGRFRIVSNDERE-QTLNQLLTE-MDGFDSNSAVIVLGATNRSD-------------VLDPALRRPGRFDRVV- 498 (816)
Q Consensus 435 aL~~~r~~~~~~~~~~e~~-~~Ln~LL~e-mDg~~~~~~ViVIaATN~pd-------------~LDpALlRpGRFdr~I- 498 (816)
.+..+... +.++-.+ |+++--..- +. .-+.+.-|||++|..+ .|+|.|++ |||.++
T Consensus 537 KM~dStrS----vLhEvMEQQTvSIAKAGII~--sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIyl 608 (804)
T KOG0478|consen 537 KMSDSTRS----VLHEVMEQQTLSIAKAGIIA--SLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFL 608 (804)
T ss_pred hhhHHHHH----HHHHHHHHhhhhHhhcceee--eccccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEE
Confidence 99543321 2222222 222211111 11 1234567899998532 57899999 999655
Q ss_pred EecCCCHH
Q 003476 499 MVETPDKI 506 (816)
Q Consensus 499 ~v~~Pd~~ 506 (816)
.++.||..
T Consensus 609 llD~~DE~ 616 (804)
T KOG0478|consen 609 LLDKPDER 616 (804)
T ss_pred EecCcchh
Confidence 45677765
No 243
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.29 E-value=1.9e-07 Score=103.51 Aligned_cols=219 Identities=24% Similarity=0.217 Sum_probs=112.3
Q ss_pred cccCChHHHHHHHHHHHHhcChhHH---hhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH--HHH--
Q 003476 333 DVAGVDEAKEELEEIVEFLRSPDKY---IRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV--ELY-- 405 (816)
Q Consensus 333 DV~G~ee~K~~L~eiV~~Lk~p~~~---~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~--~~~-- 405 (816)
.|.|.+.+|..+.= .|-..... .....+..-++||+|.||||||.|.+.++.-+...+ ++++.... ...
T Consensus 25 ~i~g~~~iK~aill---~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~ 100 (331)
T PF00493_consen 25 SIYGHEDIKKAILL---QLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTAS 100 (331)
T ss_dssp TTTT-HHHHHHHCC---CCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEE
T ss_pred cCcCcHHHHHHHHH---HHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCccce
Confidence 57888888775421 11111000 000123455799999999999999998876543333 22222110 000
Q ss_pred ----hhcchHHHH-HHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCC-----------CC
Q 003476 406 ----VGMGASRVR-DLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------SN 469 (816)
Q Consensus 406 ----vG~~~~~vr-~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~-----------~~ 469 (816)
...+...+. ..+-.|.. .|++|||+|.+... ....|+..|+.-. -+
T Consensus 101 ~~~d~~~~~~~leaGalvlad~---GiccIDe~dk~~~~---------------~~~~l~eaMEqq~isi~kagi~~~l~ 162 (331)
T PF00493_consen 101 VSRDPVTGEWVLEAGALVLADG---GICCIDEFDKMKED---------------DRDALHEAMEQQTISIAKAGIVTTLN 162 (331)
T ss_dssp ECCCGGTSSECEEE-HHHHCTT---SEEEECTTTT--CH---------------HHHHHHHHHHCSCEEECTSSSEEEEE
T ss_pred eccccccceeEEeCCchhcccC---ceeeecccccccch---------------HHHHHHHHHHcCeeccchhhhccccc
Confidence 000000000 12333433 49999999998532 1245555555311 13
Q ss_pred CcEEEEEEcCCCC-------------CCCcccCCCCcccceEEe-cCCCHHHHHHHHHHHHhcCCC--------------
Q 003476 470 SAVIVLGATNRSD-------------VLDPALRRPGRFDRVVMV-ETPDKIGREAILKVHVSKKEL-------------- 521 (816)
Q Consensus 470 ~~ViVIaATN~pd-------------~LDpALlRpGRFdr~I~v-~~Pd~~eR~~ILk~~l~~~~l-------------- 521 (816)
.+.-|+||+|... .+++.|++ |||..+.+ +.|+.+.-..|.++.+.....
T Consensus 163 ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF00493_consen 163 ARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDK 240 (331)
T ss_dssp ---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-
T ss_pred chhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEeccccccccccccccccCC
Confidence 4578999998754 47889998 99987654 677766665555544433210
Q ss_pred CCccccC-------------------HHHHHh-------------hCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHH
Q 003476 522 PLAKDID-------------------LGDIAS-------------MTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI 569 (816)
Q Consensus 522 ~l~~dvd-------------------l~~LA~-------------~t~G~SgaDL~~LvneAa~~A~r~~~~~It~~d~~ 569 (816)
.++.+.- .+.|.. .....|.+.|+.+++-|...|..+-+..|+.+|+.
T Consensus 241 ~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~ 320 (331)
T PF00493_consen 241 PISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVE 320 (331)
T ss_dssp TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHH
T ss_pred ccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHH
Confidence 1111110 011110 11245678889999999999999999999999999
Q ss_pred HHHHHH
Q 003476 570 HAVERS 575 (816)
Q Consensus 570 ~Al~r~ 575 (816)
.|++-.
T Consensus 321 ~Ai~L~ 326 (331)
T PF00493_consen 321 EAIRLF 326 (331)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998643
No 244
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.28 E-value=2.2e-06 Score=101.99 Aligned_cols=223 Identities=25% Similarity=0.266 Sum_probs=127.3
Q ss_pred cccccCChHHHHHHHHHHHHhcChhHHhhh--CCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEe-echhhHHHHhh
Q 003476 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRL--GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC-SASEFVELYVG 407 (816)
Q Consensus 331 f~DV~G~ee~K~~L~eiV~~Lk~p~~~~~l--g~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~i-s~s~~~~~~vG 407 (816)
.-.|.|++.+|+.+.=. .+.-..+...- ..+..-+|||+|.||||||.|.|.+++-+-.-++.- .++. -+|
T Consensus 285 aPsIyG~e~VKkAilLq--LfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss----~~G 358 (682)
T COG1241 285 APSIYGHEDVKKAILLQ--LFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSS----AAG 358 (682)
T ss_pred cccccCcHHHHHHHHHH--hcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEcccccc----ccC
Confidence 34588999998876422 22222111110 123446799999999999999999998875544332 2221 123
Q ss_pred cchHHHHHHH--H---HHH---hcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCC-----------CC
Q 003476 408 MGASRVRDLF--A---RAK---KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----------DS 468 (816)
Q Consensus 408 ~~~~~vr~lF--~---~A~---~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~-----------~~ 468 (816)
.++..+++-+ + .|- ...+.|.+|||+|.+.... -+.+...|+.. .-
T Consensus 359 LTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~d---------------r~aihEaMEQQtIsIaKAGI~atL 423 (682)
T COG1241 359 LTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEED---------------RVAIHEAMEQQTISIAKAGITATL 423 (682)
T ss_pred ceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChHH---------------HHHHHHHHHhcEeeecccceeeec
Confidence 3333333322 0 111 1235699999999875321 12333333321 11
Q ss_pred CCcEEEEEEcCCCC-------------CCCcccCCCCcccceEEec-CCCHHHHHH----HHHHHHhcC-----------
Q 003476 469 NSAVIVLGATNRSD-------------VLDPALRRPGRFDRVVMVE-TPDKIGREA----ILKVHVSKK----------- 519 (816)
Q Consensus 469 ~~~ViVIaATN~pd-------------~LDpALlRpGRFdr~I~v~-~Pd~~eR~~----ILk~~l~~~----------- 519 (816)
+.+.-|+||+|... .|+++|++ |||..+.+. .|+.+.-+. |+..|....
T Consensus 424 nARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~ 501 (682)
T COG1241 424 NARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVD 501 (682)
T ss_pred chhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHHHHHhcccccccccccccc
Confidence 34567888998753 57888998 999776554 566654333 344442100
Q ss_pred -------------------CC-CCccccCHHHHH------h---------hCCCCCHHHHHHHHHHHHHHHHHhCCcccc
Q 003476 520 -------------------EL-PLAKDIDLGDIA------S---------MTTGFTGADLANLVNEAALLAGRLNKVVVE 564 (816)
Q Consensus 520 -------------------~l-~l~~dvdl~~LA------~---------~t~G~SgaDL~~LvneAa~~A~r~~~~~It 564 (816)
.+ |.-.+...+.|. + .+...|.++|+.+++-|-..|..+-+..|+
T Consensus 502 ~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~ 581 (682)
T COG1241 502 EVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVE 581 (682)
T ss_pred ccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCC
Confidence 01 111111111111 0 122357888888888888888888888888
Q ss_pred HHHHHHHHHHHH
Q 003476 565 KIDFIHAVERSI 576 (816)
Q Consensus 565 ~~d~~~Al~r~i 576 (816)
.+|+.+|+.-+.
T Consensus 582 ~eD~~eAi~lv~ 593 (682)
T COG1241 582 EEDVDEAIRLVD 593 (682)
T ss_pred HHHHHHHHHHHH
Confidence 888888886544
No 245
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.28 E-value=2.6e-05 Score=89.61 Aligned_cols=210 Identities=16% Similarity=0.202 Sum_probs=109.2
Q ss_pred cCCCccccccccCCh----HHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeech
Q 003476 324 EQGDTITFADVAGVD----EAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS 399 (816)
Q Consensus 324 ~~~~~vtf~DV~G~e----e~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s 399 (816)
++..+-+.+||+=.. +++++|+ .+++++. .-..+-+||+||+|||||+.++.++.++|+.++.-+..
T Consensus 74 eKy~P~t~eeLAVHkkKI~eVk~WL~-~~~~~~~--------~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Np 144 (634)
T KOG1970|consen 74 EKYKPRTLEELAVHKKKISEVKQWLK-QVAEFTP--------KLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNP 144 (634)
T ss_pred HhcCcccHHHHhhhHHhHHHHHHHHH-HHHHhcc--------CCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCC
Confidence 344455666666543 4444444 2222221 11234588999999999999999999999877765411
Q ss_pred -------------hhHHHHhhcchHHHHHHHHHHH------------hcCCEEEEEcCccchhhccCCccccccchHHHH
Q 003476 400 -------------EFVELYVGMGASRVRDLFARAK------------KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQ 454 (816)
Q Consensus 400 -------------~~~~~~vG~~~~~vr~lF~~A~------------~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~ 454 (816)
.+...+....-..+......+. ...|.+|+|||+-...... ...
T Consensus 145 i~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d-----------~~~ 213 (634)
T KOG1970|consen 145 INLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD-----------DSE 213 (634)
T ss_pred ccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh-----------hHH
Confidence 1111111111122222333331 1346799999997765321 112
Q ss_pred HHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCC------CcccceEEecCCCHHHHHHHHHHHHhcCCCCCcc-cc
Q 003476 455 TLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRP------GRFDRVVMVETPDKIGREAILKVHVSKKELPLAK-DI 527 (816)
Q Consensus 455 ~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRp------GRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~-dv 527 (816)
.+..+|.+.-....-.-|++|.-++.++..++..+.+ .|.+ +|.|.+-...-..+.|+..++....+... .+
T Consensus 214 ~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~-~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~ 292 (634)
T KOG1970|consen 214 TFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRIS-NISFNPIAPTIMKKFLKRICRIEANKKSGIKV 292 (634)
T ss_pred HHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcc-eEeecCCcHHHHHHHHHHHHHHhcccccCCcC
Confidence 2223333222111222233333333334333333221 2444 67777777777777777777765444432 01
Q ss_pred -CHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 003476 528 -DLGDIASMTTGFTGADLANLVNEAALLA 555 (816)
Q Consensus 528 -dl~~LA~~t~G~SgaDL~~LvneAa~~A 555 (816)
+...+-..+.| +++||+.+++.-.+.+
T Consensus 293 ~~~~~v~~i~~~-s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 293 PDTAEVELICQG-SGGDIRSAINSLQLSS 320 (634)
T ss_pred chhHHHHHHHHh-cCccHHHHHhHhhhhc
Confidence 12333334444 4569999999887775
No 246
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.27 E-value=6.8e-06 Score=87.65 Aligned_cols=180 Identities=18% Similarity=0.252 Sum_probs=119.6
Q ss_pred CCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEe------
Q 003476 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISC------ 396 (816)
Q Consensus 326 ~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~i------ 396 (816)
..+-+++.+.+.++....|+.+... ...| ++|+|||+|+||-+.+.++-+++ |++=..+
T Consensus 7 yrpksl~~l~~~~e~~~~Lksl~~~-----------~d~P-Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~ 74 (351)
T KOG2035|consen 7 YRPKSLDELIYHEELANLLKSLSST-----------GDFP-HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFT 74 (351)
T ss_pred cCcchhhhcccHHHHHHHHHHhccc-----------CCCC-eEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEe
Confidence 3455678888888888877775531 1122 59999999999999999998876 2211111
Q ss_pred ------------echhhHHH---Hhhc-chHHHHHHHHHHHhcCC---------EEEEEcCccchhhccCCccccccchH
Q 003476 397 ------------SASEFVEL---YVGM-GASRVRDLFARAKKEAP---------SIIFIDEIDAVAKSRDGRFRIVSNDE 451 (816)
Q Consensus 397 ------------s~s~~~~~---~vG~-~~~~vr~lF~~A~~~aP---------~ILfIDEIDaL~~~r~~~~~~~~~~e 451 (816)
+....++. -.|. ..--+.++++...+..| .+++|.|.|.+.++.+.
T Consensus 75 tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~--------- 145 (351)
T KOG2035|consen 75 TPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQH--------- 145 (351)
T ss_pred cCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHH---------
Confidence 11111110 0111 12345666666554433 49999999999765442
Q ss_pred HHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHH
Q 003476 452 REQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGD 531 (816)
Q Consensus 452 ~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~ 531 (816)
.|-.-|+.+.. .+-+|..+|....+-+++++ | ...|.++.|+.++...++...+.+.++.++.+ -+..
T Consensus 146 ------aLRRTMEkYs~--~~RlIl~cns~SriIepIrS--R-Cl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~-~l~r 213 (351)
T KOG2035|consen 146 ------ALRRTMEKYSS--NCRLILVCNSTSRIIEPIRS--R-CLFIRVPAPSDEEITSVLSKVLKKEGLQLPKE-LLKR 213 (351)
T ss_pred ------HHHHHHHHHhc--CceEEEEecCcccchhHHhh--h-eeEEeCCCCCHHHHHHHHHHHHHHhcccCcHH-HHHH
Confidence 33444555544 45666778888888888887 4 34688999999999999999999988877654 3667
Q ss_pred HHhhCCC
Q 003476 532 IASMTTG 538 (816)
Q Consensus 532 LA~~t~G 538 (816)
+|+.+.|
T Consensus 214 Ia~kS~~ 220 (351)
T KOG2035|consen 214 IAEKSNR 220 (351)
T ss_pred HHHHhcc
Confidence 7776654
No 247
>PF05729 NACHT: NACHT domain
Probab=98.21 E-value=1.4e-05 Score=77.64 Aligned_cols=142 Identities=16% Similarity=0.249 Sum_probs=74.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC--------Cc-EEEeechhhHHH------------HhhcchHHHHH-HHHHHHhcC
Q 003476 367 GVLLVGLPGTGKTLLAKAVAGEAE--------VP-FISCSASEFVEL------------YVGMGASRVRD-LFARAKKEA 424 (816)
Q Consensus 367 GVLL~GPPGTGKT~LAkALA~elg--------vp-fi~is~s~~~~~------------~vG~~~~~vr~-lF~~A~~~a 424 (816)
-++|+|+||+|||++++.++..+. .+ ++.+.+.+.... ........+.. +...+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 489999999999999999987541 12 223333332221 11111112222 122333456
Q ss_pred CEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCC
Q 003476 425 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPD 504 (816)
Q Consensus 425 P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd 504 (816)
+.+|+||.+|.+....+. .........+.+++.. ...++..++|.+.+.....+...+.. ...+.+...+
T Consensus 82 ~~llilDglDE~~~~~~~----~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~~~~~~~~~~~~----~~~~~l~~~~ 151 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS----QERQRLLDLLSQLLPQ--ALPPGVKLIITSRPRAFPDLRRRLKQ----AQILELEPFS 151 (166)
T ss_pred ceEEEEechHhcccchhh----hHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCChHHHHHHhcCC----CcEEEECCCC
Confidence 779999999999753221 0011122233344432 01222333333222222122222222 1478899999
Q ss_pred HHHHHHHHHHHHhc
Q 003476 505 KIGREAILKVHVSK 518 (816)
Q Consensus 505 ~~eR~~ILk~~l~~ 518 (816)
.+++.++++.+++.
T Consensus 152 ~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 152 EEDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999988753
No 248
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.20 E-value=7.3e-06 Score=91.96 Aligned_cols=103 Identities=20% Similarity=0.293 Sum_probs=60.9
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCC-cEEEeechhhHHHHh------hcchHHHHHHHHHHHhcCCEEEEEcCcc
Q 003476 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-PFISCSASEFVELYV------GMGASRVRDLFARAKKEAPSIIFIDEID 434 (816)
Q Consensus 362 ~~~pkGVLL~GPPGTGKT~LAkALA~elgv-pfi~is~s~~~~~~v------G~~~~~vr~lF~~A~~~aP~ILfIDEID 434 (816)
...|+|++||||+|+|||+|+-.+...+.. .=..+.-.+|+.... ......+..+-+..... -.||+|||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~-~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKE-SRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhc-CCEEEEeeee
Confidence 457999999999999999999999887754 111222223322100 01112233333333333 2399999986
Q ss_pred chhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCC
Q 003476 435 AVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (816)
Q Consensus 435 aL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~p 481 (816)
--- -.-...+..|+..+- ..+|++|+|+|++
T Consensus 138 V~D------------iaDAmil~rLf~~l~----~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 138 VTD------------IADAMILKRLFEALF----KRGVVLVATSNRP 168 (362)
T ss_pred ccc------------hhHHHHHHHHHHHHH----HCCCEEEecCCCC
Confidence 421 111235555666553 3689999999985
No 249
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.19 E-value=8.6e-06 Score=78.34 Aligned_cols=110 Identities=20% Similarity=0.219 Sum_probs=64.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHHh----------------------hc--chHHHHHHHHHH
Q 003476 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV----------------------GM--GASRVRDLFARA 420 (816)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~~~v----------------------G~--~~~~vr~lF~~A 420 (816)
++|+||||+|||++++.++..+ +.+++.++......... .. .....+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 56666666543322100 00 001112234455
Q ss_pred HhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCC
Q 003476 421 KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (816)
Q Consensus 421 ~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd 482 (816)
....|.+|+|||+..+....... .........+.+..++..+. +.++.+|++++.+.
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~~ 138 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREI-REGYPGELDEELRELLERAR----KGGVTVIFTLQVPS 138 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHh----cCCceEEEEEecCC
Confidence 66778899999999886442110 01122333455555555543 24566666665543
No 250
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.17 E-value=1e-05 Score=87.41 Aligned_cols=139 Identities=21% Similarity=0.333 Sum_probs=75.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCC-c--EEEeechhhHHHHhhcchHHHHHHHHHH-----------HhcCCEEEEE
Q 003476 365 PRGVLLVGLPGTGKTLLAKAVAGEAEV-P--FISCSASEFVELYVGMGASRVRDLFARA-----------KKEAPSIIFI 430 (816)
Q Consensus 365 pkGVLL~GPPGTGKT~LAkALA~elgv-p--fi~is~s~~~~~~vG~~~~~vr~lF~~A-----------~~~aP~ILfI 430 (816)
.+.+||+||+|||||++++.+-.++.- . ...++++.... +..++.+++.. .....+|+||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt------s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fi 106 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT------SNQLQKIIESKLEKRRGRVYGPPGGKKLVLFI 106 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH------HHHHHHCCCTTECECTTEEEEEESSSEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC------HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEe
Confidence 356999999999999999988776542 2 22334432211 12222222111 1123469999
Q ss_pred cCccchhhccCCccccccchHHHHHHHHHHhhccCCCC-------CCcEEEEEEcCCCC---CCCcccCCCCcccceEEe
Q 003476 431 DEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS-------NSAVIVLGATNRSD---VLDPALRRPGRFDRVVMV 500 (816)
Q Consensus 431 DEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~-------~~~ViVIaATN~pd---~LDpALlRpGRFdr~I~v 500 (816)
||+..-..+.-+ ....-+.|.|++..=.-++. -.++.+|||+|.+. .+++.++| .|- .+.+
T Consensus 107 DDlN~p~~d~yg------tq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f~-i~~~ 177 (272)
T PF12775_consen 107 DDLNMPQPDKYG------TQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HFN-ILNI 177 (272)
T ss_dssp ETTT-S---TTS--------HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TEE-EEE-
T ss_pred cccCCCCCCCCC------CcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--heE-EEEe
Confidence 999875543321 11123455555543211111 13588889988642 46777776 553 7889
Q ss_pred cCCCHHHHHHHHHHHHhc
Q 003476 501 ETPDKIGREAILKVHVSK 518 (816)
Q Consensus 501 ~~Pd~~eR~~ILk~~l~~ 518 (816)
+.|+.+....|+...+..
T Consensus 178 ~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 178 PYPSDESLNTIFSSILQS 195 (272)
T ss_dssp ---TCCHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHhh
Confidence 999999988887777653
No 251
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.16 E-value=7e-06 Score=95.29 Aligned_cols=222 Identities=21% Similarity=0.220 Sum_probs=126.8
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHh--hhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHHhh
Q 003476 330 TFADVAGVDEAKEELEEIVEFLRSPDKYI--RLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVG 407 (816)
Q Consensus 330 tf~DV~G~ee~K~~L~eiV~~Lk~p~~~~--~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~~vG 407 (816)
-|-.|.|.+.+|.-+.-. .+-.-.++. ....+..-+|+++|.||||||-+.+++++-+-.-++.. +.. +.-.|
T Consensus 343 l~PsIyGhe~VK~GilL~--LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYts-Gka--SSaAG 417 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGILLS--LFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTS-GKA--SSAAG 417 (764)
T ss_pred hCccccchHHHHhhHHHH--HhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEec-Ccc--ccccc
Confidence 366799999999865322 222222222 22345566799999999999999999998775554332 110 00011
Q ss_pred cchHHHHH-----HHHHHHh---cCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCC-----------CC
Q 003476 408 MGASRVRD-----LFARAKK---EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----------DS 468 (816)
Q Consensus 408 ~~~~~vr~-----lF~~A~~---~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~-----------~~ 468 (816)
.++.-+++ .--.|-. ..-.|-.|||+|.+..+.+ .+++..|+.- .-
T Consensus 418 LTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dq---------------vAihEAMEQQtISIaKAGv~aTL 482 (764)
T KOG0480|consen 418 LTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQ---------------VAIHEAMEQQTISIAKAGVVATL 482 (764)
T ss_pred ceEEEEecCCCCceeeecCcEEEccCceEEechhcccChHhH---------------HHHHHHHHhheehheecceEEee
Confidence 11111111 0001110 1234999999999864332 1233333311 11
Q ss_pred CCcEEEEEEcCCCC-------------CCCcccCCCCcccceE-EecCCCHHHHHHHHHHHHhcCCCCCcccc------C
Q 003476 469 NSAVIVLGATNRSD-------------VLDPALRRPGRFDRVV-MVETPDKIGREAILKVHVSKKELPLAKDI------D 528 (816)
Q Consensus 469 ~~~ViVIaATN~pd-------------~LDpALlRpGRFdr~I-~v~~Pd~~eR~~ILk~~l~~~~l~l~~dv------d 528 (816)
+.+.-||||+|+.. .+++++++ |||..+ -++.|+...-..|-++.+..+. .+++.+ .
T Consensus 483 nARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~-~i~~~~~~~~~~~ 559 (764)
T KOG0480|consen 483 NARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHR-GIDDATERVCVYT 559 (764)
T ss_pred cchhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhc-ccccccccccccc
Confidence 23456888998742 56889998 999644 5567777665555444443211 000000 0
Q ss_pred HH----------------------HH---------------HhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHH
Q 003476 529 LG----------------------DI---------------ASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (816)
Q Consensus 529 l~----------------------~L---------------A~~t~G~SgaDL~~LvneAa~~A~r~~~~~It~~d~~~A 571 (816)
.+ .| .+-+.+.|.++|+.+++-+-.+|..+-+..||.+|+.+|
T Consensus 560 ~e~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea 639 (764)
T KOG0480|consen 560 LEQVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEA 639 (764)
T ss_pred HHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHH
Confidence 00 00 011346678899999888888887777888888888888
Q ss_pred HHH
Q 003476 572 VER 574 (816)
Q Consensus 572 l~r 574 (816)
++-
T Consensus 640 ~eL 642 (764)
T KOG0480|consen 640 VEL 642 (764)
T ss_pred HHH
Confidence 754
No 252
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.00 E-value=2.3e-05 Score=80.44 Aligned_cols=114 Identities=15% Similarity=0.186 Sum_probs=63.5
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhH-HHHhh----------------------cchHHHHH
Q 003476 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV-ELYVG----------------------MGASRVRD 415 (816)
Q Consensus 362 ~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~-~~~vG----------------------~~~~~vr~ 415 (816)
.....-++++||||+|||+++..++.+. +.+.++++..++. +.+.. .....+..
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 88 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQK 88 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHH
Confidence 3444558999999999999999988643 6677777775421 11000 00111333
Q ss_pred HHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcC
Q 003476 416 LFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (816)
Q Consensus 416 lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN 479 (816)
+.+.+....|++|+||-|.++....... ....+.+.+..++..|..+....++.+|.+..
T Consensus 89 l~~~~~~~~~~lvVIDSis~l~~~~~~~----~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 89 TSKFIDRDSASLVVVDSFTALYRLELSD----DRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHHHHhhcCccEEEEeCcHHHhHHHhCC----ccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 4444555578999999999986432110 11122223333333333333345666766654
No 253
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.99 E-value=1.1e-05 Score=91.48 Aligned_cols=172 Identities=23% Similarity=0.232 Sum_probs=95.7
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEee-chhhHHHHhhcch
Q 003476 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS-ASEFVELYVGMGA 410 (816)
Q Consensus 332 ~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is-~s~~~~~~vG~~~ 410 (816)
-+|.|.+++|+.|.-++----+...-.-+.++..-+|+|.|.||+-||-|.+.+.+-+-.-.+..- +| .-+|.++
T Consensus 342 PEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGS----SGVGLTA 417 (721)
T KOG0482|consen 342 PEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGS----SGVGLTA 417 (721)
T ss_pred hhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCC----Cccccch
Confidence 369999999998866543311111111223455567999999999999999999987655544431 11 1133333
Q ss_pred HHHHHHHHH-------HH-hcCCEEEEEcCccchhhccCCccccccchHHHH-HHHHHHhhccCCCCCCcEEEEEEcCCC
Q 003476 411 SRVRDLFAR-------AK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQ-TLNQLLTEMDGFDSNSAVIVLGATNRS 481 (816)
Q Consensus 411 ~~vr~lF~~-------A~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~-~Ln~LL~emDg~~~~~~ViVIaATN~p 481 (816)
.-+++-..- |. .....|.+|||+|.+...... .-++..+| ++.---.-+. -.-+.+.-|+||.|..
T Consensus 418 AVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRt----AIHEVMEQQTISIaKAGI~-TtLNAR~sILaAANPa 492 (721)
T KOG0482|consen 418 AVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRT----AIHEVMEQQTISIAKAGIN-TTLNARTSILAAANPA 492 (721)
T ss_pred hhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhH----HHHHHHHhhhhhhhhhccc-cchhhhHHhhhhcCcc
Confidence 333321110 00 011248999999998643221 12222222 1111111110 1123556788888863
Q ss_pred C-------------CCCcccCCCCcccceEE-ecCCCHHHHHHHHHH
Q 003476 482 D-------------VLDPALRRPGRFDRVVM-VETPDKIGREAILKV 514 (816)
Q Consensus 482 d-------------~LDpALlRpGRFdr~I~-v~~Pd~~eR~~ILk~ 514 (816)
. .|++||++ |||...- .+.||.+.-+.+.++
T Consensus 493 yGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~H 537 (721)
T KOG0482|consen 493 YGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQH 537 (721)
T ss_pred ccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHH
Confidence 1 57899999 9996553 457877665544443
No 254
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.96 E-value=5e-05 Score=97.06 Aligned_cols=179 Identities=19% Similarity=0.292 Sum_probs=100.6
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE---EEeech---h
Q 003476 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF---ISCSAS---E 400 (816)
Q Consensus 327 ~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpf---i~is~s---~ 400 (816)
+...+++++|.+...+++.+++.. .....+-+-|+||+|+|||+||+++++....+| +.++.. .
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~ 248 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHL----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHcc----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc
Confidence 345689999999888877766532 223356688999999999999999988764433 111110 0
Q ss_pred hHHHHh-----------hcchHHHH-------------HHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHH
Q 003476 401 FVELYV-----------GMGASRVR-------------DLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (816)
Q Consensus 401 ~~~~~v-----------G~~~~~vr-------------~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L 456 (816)
..+.+. ......+. ..++..-...+.+|++|++|.. ..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~-----------------~~l 311 (1153)
T PLN03210 249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ-----------------DVL 311 (1153)
T ss_pred chhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH-----------------HHH
Confidence 000000 00000001 1122222355779999998643 123
Q ss_pred HHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCcccc-C-HHHHHh
Q 003476 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDI-D-LGDIAS 534 (816)
Q Consensus 457 n~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dv-d-l~~LA~ 534 (816)
..+....+.+. .+-.||.||.... +++....++.+.++.|+.++..+++..++-+...+ .++. + ...+++
T Consensus 312 ~~L~~~~~~~~--~GsrIIiTTrd~~-----vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~-~~~~~~l~~~iv~ 383 (1153)
T PLN03210 312 DALAGQTQWFG--SGSRIIVITKDKH-----FLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP-PDGFMELASEVAL 383 (1153)
T ss_pred HHHHhhCccCC--CCcEEEEEeCcHH-----HHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHH
Confidence 33433333332 2334445666433 33323457789999999999999999887554322 1110 1 234566
Q ss_pred hCCCCC
Q 003476 535 MTTGFT 540 (816)
Q Consensus 535 ~t~G~S 540 (816)
.+.|..
T Consensus 384 ~c~GLP 389 (1153)
T PLN03210 384 RAGNLP 389 (1153)
T ss_pred HhCCCc
Confidence 777754
No 255
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.94 E-value=1.3e-05 Score=93.77 Aligned_cols=184 Identities=24% Similarity=0.356 Sum_probs=109.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh--cCCcEEEeechhhHHH-----Hhhcc--------hHHHHHHHHHHHhcCCEEEEEc
Q 003476 367 GVLLVGLPGTGKTLLAKAVAGE--AEVPFISCSASEFVEL-----YVGMG--------ASRVRDLFARAKKEAPSIIFID 431 (816)
Q Consensus 367 GVLL~GPPGTGKT~LAkALA~e--lgvpfi~is~s~~~~~-----~vG~~--------~~~vr~lF~~A~~~aP~ILfID 431 (816)
.+||.|.|||||-.|||++-.. ..-||+.++|.-+-+. ++|-. .+-.+..+++|... .+|+|
T Consensus 338 pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gG---tlFld 414 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGG---TLFLD 414 (606)
T ss_pred CeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCC---ccHHH
Confidence 4999999999999999999664 4579999999765442 22221 12233344444433 89999
Q ss_pred CccchhhccCCccccccchHHHHHHHHHHhh-----ccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccc-------eEE
Q 003476 432 EIDAVAKSRDGRFRIVSNDEREQTLNQLLTE-----MDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDR-------VVM 499 (816)
Q Consensus 432 EIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e-----mDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr-------~I~ 499 (816)
||..+.-.-+ ..|-+.|.+ +.+-...-.|-||+||+++ -..|.+-|||-+ ...
T Consensus 415 eIgd~p~~~Q------------s~LLrVl~e~~v~p~g~~~~~vdirvi~ath~d---l~~lv~~g~fredLyyrL~~~~ 479 (606)
T COG3284 415 EIGDMPLALQ------------SRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRD---LAQLVEQGRFREDLYYRLNAFV 479 (606)
T ss_pred HhhhchHHHH------------HHHHHHHhhCceeccCCcceeEEEEEEeccCcC---HHHHHHcCCchHHHHHHhcCee
Confidence 9988763322 122233333 2333323358899999885 245667788754 345
Q ss_pred ecCCCHHHHH---HHHHHHHhcCC---CCCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003476 500 VETPDKIGRE---AILKVHVSKKE---LPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (816)
Q Consensus 500 v~~Pd~~eR~---~ILk~~l~~~~---l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~~~~It~~d~~~Al 572 (816)
|.+|...+|. ..|..++.+++ +.++++. +..|...-.--+.++|.|++..++..+ ....|...|+...+
T Consensus 480 i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~-~~~l~~~~WPGNirel~~v~~~~~~l~---~~g~~~~~dlp~~l 554 (606)
T COG3284 480 ITLPPLRERSDRIPLLDRILKRENDWRLQLDDDA-LARLLAYRWPGNIRELDNVIERLAALS---DGGRIRVSDLPPEL 554 (606)
T ss_pred eccCchhcccccHHHHHHHHHHccCCCccCCHHH-HHHHHhCCCCCcHHHHHHHHHHHHHcC---CCCeeEcccCCHHH
Confidence 6678877765 34444444332 2333332 233333333337899999999887766 33344444444444
No 256
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.92 E-value=0.00013 Score=77.98 Aligned_cols=174 Identities=22% Similarity=0.310 Sum_probs=90.7
Q ss_pred HHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHh--cCCc-----EEEeech----hhHHH---Hhhc
Q 003476 343 ELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE--AEVP-----FISCSAS----EFVEL---YVGM 408 (816)
Q Consensus 343 ~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~e--lgvp-----fi~is~s----~~~~~---~vG~ 408 (816)
+++++.+.|.... ...+-|.|+|++|+|||+||+.++.. ..-. ++.++.. ++... ..+.
T Consensus 4 ~~~~l~~~L~~~~-------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 4 EIEKLKDWLLDNS-------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp HHHHHHHHHHTTT-------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhCCC-------CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 4556666655421 34556899999999999999999987 3222 2233211 11111 1111
Q ss_pred ---------chHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcC
Q 003476 409 ---------GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (816)
Q Consensus 409 ---------~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN 479 (816)
......+.+...-...+++|+||+++... .+..+...+... ..+..||.||.
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~-----------------~~~~l~~~~~~~--~~~~kilvTTR 137 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE-----------------DLEELREPLPSF--SSGSKILVTTR 137 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH-----------------HH-------HCH--HSS-EEEEEES
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccc-----------------cccccccccccc--ccccccccccc
Confidence 12223344444444559999999987642 112222222111 12345556775
Q ss_pred CCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCC-CC-ccccCHHHHHhhCCCCCHHHHHHH
Q 003476 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKEL-PL-AKDIDLGDIASMTTGFTGADLANL 547 (816)
Q Consensus 480 ~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l-~l-~~dvdl~~LA~~t~G~SgaDL~~L 547 (816)
...... ..- .-+..+.++..+.++-.++|...+..... .. ..+-....|++.+.| .|-.|.-+
T Consensus 138 ~~~v~~-~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~ 202 (287)
T PF00931_consen 138 DRSVAG-SLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLI 202 (287)
T ss_dssp CGGGGT-THH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred cccccc-ccc---cccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 533221 111 11468899999999999999998765431 00 111235678888877 46555444
No 257
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.89 E-value=0.00022 Score=76.53 Aligned_cols=121 Identities=13% Similarity=0.171 Sum_probs=82.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-----EEEe-echhhHH--------HHh---hcchHHHHHHHHHHHh---
Q 003476 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-----FISC-SASEFVE--------LYV---GMGASRVRDLFARAKK--- 422 (816)
Q Consensus 363 ~~pkGVLL~GPPGTGKT~LAkALA~elgvp-----fi~i-s~s~~~~--------~~v---G~~~~~vr~lF~~A~~--- 422 (816)
.+|..+||+||+|+||..+|.++|..+-+. +-.+ +|..+.. .+. .-+...+|++.+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 567889999999999999999999876432 1111 1111111 010 1234556666554432
Q ss_pred --cCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEe
Q 003476 423 --EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMV 500 (816)
Q Consensus 423 --~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v 500 (816)
..-.|++||++|.+.. ...|.||..++ ++..++++|..|+.++.+.|.+++ |. ..+.+
T Consensus 85 e~~~~KV~II~~ae~m~~---------------~AaNaLLK~LE--EPp~~t~fiLit~~~~~lLpTI~S--RC-q~~~~ 144 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNK---------------QSANSLLKLIE--EPPKNTYGIFTTRNENNILNTILS--RC-VQYVV 144 (261)
T ss_pred hcCCCEEEEeccHhhhCH---------------HHHHHHHHhhc--CCCCCeEEEEEECChHhCchHhhh--he-eeeec
Confidence 1246999999999853 45699999998 466788999999999999999998 53 24555
Q ss_pred cCC
Q 003476 501 ETP 503 (816)
Q Consensus 501 ~~P 503 (816)
+.+
T Consensus 145 ~~~ 147 (261)
T PRK05818 145 LSK 147 (261)
T ss_pred CCh
Confidence 555
No 258
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=4.5e-05 Score=83.07 Aligned_cols=122 Identities=16% Similarity=0.190 Sum_probs=82.4
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeech--------hhHHHH-hh----cchHHHHHHHHHHHhc----C
Q 003476 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS--------EFVELY-VG----MGASRVRDLFARAKKE----A 424 (816)
Q Consensus 362 ~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s--------~~~~~~-vG----~~~~~vr~lF~~A~~~----a 424 (816)
.+.|..+||+||+|+||+.+|.++|..+-+.--.-+|. ++...+ .+ -+...+|++.+.+... .
T Consensus 16 ~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~ 95 (290)
T PRK05917 16 QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESP 95 (290)
T ss_pred CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCC
Confidence 46678899999999999999999999875421001111 110000 11 1345566666655432 2
Q ss_pred CEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCC
Q 003476 425 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETP 503 (816)
Q Consensus 425 P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~P 503 (816)
-.|++||++|.+.. +.-|.||..++ ++..++++|..|+.++.|.|.+++ |. ..+.|+++
T Consensus 96 ~kv~ii~~ad~mt~---------------~AaNaLLK~LE--EPp~~~~fiL~~~~~~~ll~TI~S--Rc-q~~~~~~~ 154 (290)
T PRK05917 96 YKIYIIHEADRMTL---------------DAISAFLKVLE--DPPQHGVIILTSAKPQRLPPTIRS--RS-LSIHIPME 154 (290)
T ss_pred ceEEEEechhhcCH---------------HHHHHHHHHhh--cCCCCeEEEEEeCChhhCcHHHHh--cc-eEEEccch
Confidence 35999999999863 34589999998 456778888899999999999987 53 35556543
No 259
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.86 E-value=3e-05 Score=85.49 Aligned_cols=131 Identities=20% Similarity=0.235 Sum_probs=73.7
Q ss_pred ChHHHHHHHHHHHHhcChhHH----hhhC---CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE-EEeechhhHH-----
Q 003476 337 VDEAKEELEEIVEFLRSPDKY----IRLG---ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-ISCSASEFVE----- 403 (816)
Q Consensus 337 ~ee~K~~L~eiV~~Lk~p~~~----~~lg---~~~pkGVLL~GPPGTGKT~LAkALA~elgvpf-i~is~s~~~~----- 403 (816)
+..+.+.|..+.+.+..+..- ..+. ..+|+|+.|+||-|.|||+|.-..-..+-.+- ..+.-..|+-
T Consensus 30 Q~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~ 109 (367)
T COG1485 30 QPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQR 109 (367)
T ss_pred HHHHHHHHHHHHHHhhcccccccccccccccCCCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHH
Confidence 455666666666644332211 1122 34789999999999999999999988775433 2222223322
Q ss_pred --HHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCC
Q 003476 404 --LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (816)
Q Consensus 404 --~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~p 481 (816)
...|.. .-+..+-+...+ .-.||+|||+.- .+-.-.-++..|+.+|= ..||++++|+|.+
T Consensus 110 l~~l~g~~-dpl~~iA~~~~~-~~~vLCfDEF~V------------tDI~DAMiL~rL~~~Lf----~~GV~lvaTSN~~ 171 (367)
T COG1485 110 LHTLQGQT-DPLPPIADELAA-ETRVLCFDEFEV------------TDIADAMILGRLLEALF----ARGVVLVATSNTA 171 (367)
T ss_pred HHHHcCCC-CccHHHHHHHHh-cCCEEEeeeeee------------cChHHHHHHHHHHHHHH----HCCcEEEEeCCCC
Confidence 112222 111111111111 224999999753 11112345667777664 3589999999974
Q ss_pred -CCCC
Q 003476 482 -DVLD 485 (816)
Q Consensus 482 -d~LD 485 (816)
+.|-
T Consensus 172 P~~LY 176 (367)
T COG1485 172 PDNLY 176 (367)
T ss_pred hHHhc
Confidence 4443
No 260
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.82 E-value=8.1e-05 Score=84.81 Aligned_cols=206 Identities=25% Similarity=0.344 Sum_probs=103.3
Q ss_pred cccCChHHHHHHHHHHHHh---cChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHHhhcc
Q 003476 333 DVAGVDEAKEELEEIVEFL---RSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMG 409 (816)
Q Consensus 333 DV~G~ee~K~~L~eiV~~L---k~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~~vG~~ 409 (816)
.|.|.+++|+.+.=++--- .-|+ .+..+..-+|||-|.|||-|+-|.|-+-.-+-+-++. |+.. +.-.|.+
T Consensus 332 SIfG~~DiKkAiaClLFgGsrK~LpD---g~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYT-SGKG--SSAAGLT 405 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGSRKRLPD---GVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYT-SGKG--SSAAGLT 405 (729)
T ss_pred hhcCchhHHHHHHHHhhcCccccCCC---cceeccceeEEEecCCchhHHHHHHHHHhcCceEEEe-cCCC--cccccce
Confidence 4678888777654432110 0111 1112334569999999999999999987654433332 2110 0001111
Q ss_pred hHHHHHHHH-----H--HH-hcCCEEEEEcCccchhhccCCccccccchHHH-HHHHHHHhhccCCCCCCcEEEEEEcCC
Q 003476 410 ASRVRDLFA-----R--AK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDERE-QTLNQLLTEMDGFDSNSAVIVLGATNR 480 (816)
Q Consensus 410 ~~~vr~lF~-----~--A~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~-~~Ln~LL~emDg~~~~~~ViVIaATN~ 480 (816)
++-+|+--. + |. .....|++|||+|.+-.... ..-++..+ |++.---.-+- -.-+++.-|+||.|.
T Consensus 406 ASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~DR----VAIHEAMEQQTISIAKAGIT-T~LNSRtSVLAAANp 480 (729)
T KOG0481|consen 406 ASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDDR----VAIHEAMEQQTISIAKAGIT-TTLNSRTSVLAAANP 480 (729)
T ss_pred eeEEecCCcceEEEecceEEEecCCEEEeehhhccCchhh----hHHHHHHHhhhHHHhhhcce-eeecchhhhhhhcCC
Confidence 111111100 0 00 11234999999999853321 11222222 22222111111 112466788899986
Q ss_pred C-----------CCCC--cccCCCCcccceEEecCCCHHHHHH-----HHHHHHhcCCCCC------ccccCHHHHH---
Q 003476 481 S-----------DVLD--PALRRPGRFDRVVMVETPDKIGREA-----ILKVHVSKKELPL------AKDIDLGDIA--- 533 (816)
Q Consensus 481 p-----------d~LD--pALlRpGRFdr~I~v~~Pd~~eR~~-----ILk~~l~~~~l~l------~~dvdl~~LA--- 533 (816)
+ +.+| +.+++ |||..+.+..-..+++-. ++..|..+.+..- ...+.++.+-
T Consensus 481 vfGRyDd~Kt~~dNIDf~~TILS--RFDmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~~~~~KryI 558 (729)
T KOG0481|consen 481 VFGRYDDTKTGEDNIDFMPTILS--RFDMIFIVKDEHDEERDITLAKHVINVHVSKANAQTDSQEENEGEIPIEKLKRYI 558 (729)
T ss_pred ccccccccCCcccccchhhhHhh--hccEEEEEeccCcchhhhHHHHHhhhhhccccccccCccccCCCcccHHHHHHHH
Confidence 4 2333 77888 999888887655544433 4444554222111 1123343332
Q ss_pred -----hhCCCCCHHHHHHHHHHH
Q 003476 534 -----SMTTGFTGADLANLVNEA 551 (816)
Q Consensus 534 -----~~t~G~SgaDL~~LvneA 551 (816)
+-.+.+|...-++|.+..
T Consensus 559 ~YcR~kc~PrLs~~AaekL~~~y 581 (729)
T KOG0481|consen 559 QYCRLKCGPRLSAEAAEKLSSRY 581 (729)
T ss_pred HHHHhccCCCCCHHHHHHHHHHH
Confidence 234567777777776654
No 261
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.82 E-value=0.00052 Score=72.97 Aligned_cols=185 Identities=23% Similarity=0.265 Sum_probs=113.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcC---CcEEEeec-----hhhHHHHhhcc------------hHHHHHHHHHHHh-cCCE
Q 003476 368 VLLVGLPGTGKTLLAKAVAGEAE---VPFISCSA-----SEFVELYVGMG------------ASRVRDLFARAKK-EAPS 426 (816)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elg---vpfi~is~-----s~~~~~~vG~~------------~~~vr~lF~~A~~-~aP~ 426 (816)
+.++|+-|+|||.+.||+...++ +-.+.++. +.+.+.++.+. +..-+.+....++ ..|.
T Consensus 54 ~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v 133 (269)
T COG3267 54 LAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPV 133 (269)
T ss_pred EEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCCe
Confidence 67899999999999998877663 22234432 23333222211 1222333333333 4568
Q ss_pred EEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCC------CcccceEEe
Q 003476 427 IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRP------GRFDRVVMV 500 (816)
Q Consensus 427 ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRp------GRFdr~I~v 500 (816)
++++||.+.+..+. -..+.-|.+.-+.+...-.|+.|+=.. |.+.+++| -|++-.|.+
T Consensus 134 ~l~vdEah~L~~~~------------le~Lrll~nl~~~~~~~l~ivL~Gqp~----L~~~lr~~~l~e~~~R~~ir~~l 197 (269)
T COG3267 134 VLMVDEAHDLNDSA------------LEALRLLTNLEEDSSKLLSIVLIGQPK----LRPRLRLPVLRELEQRIDIRIEL 197 (269)
T ss_pred EEeehhHhhhChhH------------HHHHHHHHhhcccccCceeeeecCCcc----cchhhchHHHHhhhheEEEEEec
Confidence 99999999885321 122222222222233334466665432 23322111 267766888
Q ss_pred cCCCHHHHHHHHHHHHhcCCC--CCccccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHH
Q 003476 501 ETPDKIGREAILKVHVSKKEL--PLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI 569 (816)
Q Consensus 501 ~~Pd~~eR~~ILk~~l~~~~l--~l~~dvdl~~LA~~t~G~SgaDL~~LvneAa~~A~r~~~~~It~~d~~ 569 (816)
++.+.++-...++.++..-+. ++-.+-.+..+...+.| .|+-+.+++..|...|...++..|+...+.
T Consensus 198 ~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 198 PPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred CCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 888888888999999876432 33334456777888888 588999999999999998898888776543
No 262
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.81 E-value=9e-05 Score=86.02 Aligned_cols=169 Identities=21% Similarity=0.294 Sum_probs=88.0
Q ss_pred cccCChHHHHHHHHHHHH--hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHHhhcch
Q 003476 333 DVAGVDEAKEELEEIVEF--LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGA 410 (816)
Q Consensus 333 DV~G~ee~K~~L~eiV~~--Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~~vG~~~ 410 (816)
.|.|.+.+|..+.-.+-- -+++.. ....+..-+|||+|.|||||+-+.|.+++-...-++..--.. .-+|.++
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~--khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGA---SavGLTa 524 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGG--KHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGA---SAVGLTA 524 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCC--CceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCc---cccceeE
Confidence 467888877766433211 122211 111234456999999999999999999998877666532110 0112211
Q ss_pred HHH-----HHHHHHHHh---cCCEEEEEcCccchhhccCCccccccchHHHHH---HH--HHHhhccCCCCCCcEEEEEE
Q 003476 411 SRV-----RDLFARAKK---EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT---LN--QLLTEMDGFDSNSAVIVLGA 477 (816)
Q Consensus 411 ~~v-----r~lF~~A~~---~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~---Ln--~LL~emDg~~~~~~ViVIaA 477 (816)
... +++--.|.. ....|.+|||+|.+....... -++..+|. +. .+.+-+ +....||||
T Consensus 525 ~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqDRtS----IHEAMEQQSISISKAGIVtsL-----qArctvIAA 595 (854)
T KOG0477|consen 525 YVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQDRTS----IHEAMEQQSISISKAGIVTSL-----QARCTVIAA 595 (854)
T ss_pred EEeeCCccceeeeccCeEEEccCceEEeehhhhhcccccch----HHHHHHhcchhhhhhhHHHHH-----Hhhhhhhee
Confidence 111 111111111 123489999999997543221 12222211 00 022222 245689999
Q ss_pred cCCC-----------C--CCCcccCCCCcccceEEecC---CCHHHHH--HHHHHHHh
Q 003476 478 TNRS-----------D--VLDPALRRPGRFDRVVMVET---PDKIGRE--AILKVHVS 517 (816)
Q Consensus 478 TN~p-----------d--~LDpALlRpGRFdr~I~v~~---Pd~~eR~--~ILk~~l~ 517 (816)
+|.. . .|-..+++ |||-...|.. |-.+++. -++..|.+
T Consensus 596 anPigGRY~~s~tFaqNV~ltePIlS--RFDiLcVvkD~vd~~~De~lA~fVV~Sh~r 651 (854)
T KOG0477|consen 596 ANPIGGRYNPSLTFAQNVDLTEPILS--RFDILCVVKDTVDPVQDEKLAKFVVGSHVR 651 (854)
T ss_pred cCCCCCccCCccchhhccccccchhh--hcceeeeeecccCchhHHHHHHHHHHhHhh
Confidence 9872 1 34455666 9997666653 4444443 34445544
No 263
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.81 E-value=0.00015 Score=72.63 Aligned_cols=102 Identities=23% Similarity=0.245 Sum_probs=58.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHH------hhcc-----------------------hH----
Q 003476 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY------VGMG-----------------------AS---- 411 (816)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~~~------vG~~-----------------------~~---- 411 (816)
+|++||||||||+|+..++.+. |.++++++..+-.+.+ .|.. ..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7899999999999999886643 6677777653222110 0100 00
Q ss_pred -HHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCC
Q 003476 412 -RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (816)
Q Consensus 412 -~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~p 481 (816)
.+..+...+....|.+|+|||+..+... ........+..++..+.. .++.+|.+++..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~~--------~~~~~~~~i~~l~~~l~~----~g~tvi~v~~~~ 140 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLLM--------EQSTARLEIRRLLFALKR----FGVTTLLTSEQS 140 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhhc--------ChHHHHHHHHHHHHHHHH----CCCEEEEEeccc
Confidence 0233344445667999999999887532 112223344555555542 244555556543
No 264
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.00013 Score=89.31 Aligned_cols=201 Identities=25% Similarity=0.341 Sum_probs=129.0
Q ss_pred cccccCC-hHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------CCcEEEeech
Q 003476 331 FADVAGV-DEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCSAS 399 (816)
Q Consensus 331 f~DV~G~-ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el----------gvpfi~is~s 399 (816)
++-++|. ++ +++.+++-|.. +..++-+|+|.||+|||.++.-+|+.. +..++.++..
T Consensus 185 ldPvigr~de---eirRvi~iL~R---------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g 252 (898)
T KOG1051|consen 185 LDPVIGRHDE---EIRRVIEILSR---------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFG 252 (898)
T ss_pred CCCccCCchH---HHHHHHHHHhc---------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhh
Confidence 5667776 44 44455554433 223567999999999999999999864 3456666665
Q ss_pred hhHH--HHhhcchHHHHHHHHHHHh-cCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEE
Q 003476 400 EFVE--LYVGMGASRVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLG 476 (816)
Q Consensus 400 ~~~~--~~vG~~~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIa 476 (816)
.+.. ++-|+.+.+++++.+.+.. ...-||||||++-+...... .......|-|--.+. +.++-+|+
T Consensus 253 ~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~-------~~~~d~~nlLkp~L~----rg~l~~IG 321 (898)
T KOG1051|consen 253 SLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN-------YGAIDAANLLKPLLA----RGGLWCIG 321 (898)
T ss_pred hcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc-------chHHHHHHhhHHHHh----cCCeEEEe
Confidence 4443 5677888999999999884 45569999999998754332 112333443333332 34588998
Q ss_pred EcCCC-----CCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccC------HHHHH--hhCCCCCHHH
Q 003476 477 ATNRS-----DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDID------LGDIA--SMTTGFTGAD 543 (816)
Q Consensus 477 ATN~p-----d~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvd------l~~LA--~~t~G~SgaD 543 (816)
||..- -.=||++-| ||+ .+.++.|+.+.-..||.....+..++....+. ...++ ..+..+-+.-
T Consensus 322 atT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~ 398 (898)
T KOG1051|consen 322 ATTLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDC 398 (898)
T ss_pred cccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchh
Confidence 88532 244899998 998 77899999888777777665542222211111 11122 2344556667
Q ss_pred HHHHHHHHHHHHHH
Q 003476 544 LANLVNEAALLAGR 557 (816)
Q Consensus 544 L~~LvneAa~~A~r 557 (816)
...++++|+.....
T Consensus 399 aidl~dEa~a~~~~ 412 (898)
T KOG1051|consen 399 AIDLEDEAAALVKS 412 (898)
T ss_pred cccHHHHHHHHHhh
Confidence 77888888765543
No 265
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.79 E-value=6.3e-05 Score=82.73 Aligned_cols=201 Identities=21% Similarity=0.288 Sum_probs=117.1
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHh---cCCcEEEeechhhHH
Q 003476 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASEFVE 403 (816)
Q Consensus 327 ~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~e---lgvpfi~is~s~~~~ 403 (816)
+...|+.+++.....+.+.+-.. ++.- ....+||.|..||||-++||+.-.. ...||+.++|..+-+
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA~------k~Am----lDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe 268 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQAQ------KLAM----LDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPE 268 (511)
T ss_pred cccchHHHhhccHHHHHHHHHHH------Hhhc----cCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCch
Confidence 44567778877765544433221 1111 1223899999999999999998654 368999999987654
Q ss_pred H-----Hhhcc--hHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCC-------CC
Q 003476 404 L-----YVGMG--ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-------SN 469 (816)
Q Consensus 404 ~-----~vG~~--~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~-------~~ 469 (816)
. ..|.. .+.-..+|++|... .+|+|||..+...-+ .-+-.+|+.- .|. -.
T Consensus 269 ~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEmSp~lQ------------aKLLRFL~DG-tFRRVGee~Ev~ 332 (511)
T COG3283 269 DAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEMSPRLQ------------AKLLRFLNDG-TFRRVGEDHEVH 332 (511)
T ss_pred hHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhcCHHHH------------HHHHHHhcCC-ceeecCCcceEE
Confidence 2 22222 23446788888665 899999987764432 2233333321 011 12
Q ss_pred CcEEEEEEcCCC--CCCCcccCCCC---cccceEEecCCCHHHHHH--------HHHHHHhcCCCCCccccC---HHHHH
Q 003476 470 SAVIVLGATNRS--DVLDPALRRPG---RFDRVVMVETPDKIGREA--------ILKVHVSKKELPLAKDID---LGDIA 533 (816)
Q Consensus 470 ~~ViVIaATN~p--d~LDpALlRpG---RFdr~I~v~~Pd~~eR~~--------ILk~~l~~~~l~l~~dvd---l~~LA 533 (816)
-.|-|||||..+ +..+.--.|.. |+ ..+.+..|...+|.. .+..+..+.+.+.. ..+ +..+.
T Consensus 333 vdVRVIcatq~nL~~lv~~g~fReDLfyRL-NVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~p-kl~~~~~~~L~ 410 (511)
T COG3283 333 VDVRVICATQVNLVELVQKGKFREDLFYRL-NVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRP-KLAADLLTVLT 410 (511)
T ss_pred EEEEEEecccccHHHHHhcCchHHHHHHHh-heeeecCCccccCcccchHHHHHHHHHHHHHhCCCCC-ccCHHHHHHHH
Confidence 358999999764 22222111111 22 256677787777642 23334444444322 122 44455
Q ss_pred hhCCCCCHHHHHHHHHHHHHHH
Q 003476 534 SMTTGFTGADLANLVNEAALLA 555 (816)
Q Consensus 534 ~~t~G~SgaDL~~LvneAa~~A 555 (816)
+....-+.++|.|++-+|+...
T Consensus 411 ~y~WpGNVRqL~N~iyRA~s~~ 432 (511)
T COG3283 411 RYAWPGNVRQLKNAIYRALTLL 432 (511)
T ss_pred HcCCCccHHHHHHHHHHHHHHh
Confidence 5555557789999988887655
No 266
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.75 E-value=0.00031 Score=77.07 Aligned_cols=127 Identities=17% Similarity=0.153 Sum_probs=87.8
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCC-----------c--EEEeechhhHHHHhhcchHHHHHHHHHHHh-----cC
Q 003476 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEV-----------P--FISCSASEFVELYVGMGASRVRDLFARAKK-----EA 424 (816)
Q Consensus 363 ~~pkGVLL~GPPGTGKT~LAkALA~elgv-----------p--fi~is~s~~~~~~vG~~~~~vr~lF~~A~~-----~a 424 (816)
+.++..||+|+.|.||+.+|+++|..+-| | ++.++... ..-....++++.+.+.. ..
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g-----~~i~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD-----KDLSKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC-----CcCCHHHHHHHHHHhccCCcccCC
Confidence 45667899999999999999999998733 2 22222000 01123456666665532 24
Q ss_pred CEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCC
Q 003476 425 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPD 504 (816)
Q Consensus 425 P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd 504 (816)
..|++||++|.+.. +..|.||..|+. +...+++|..|+.++.|-|++++ | ...+.+.+|+
T Consensus 91 ~KvvII~~~e~m~~---------------~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--R-c~~~~f~~l~ 150 (299)
T PRK07132 91 KKILIIKNIEKTSN---------------SLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--R-CQVFNVKEPD 150 (299)
T ss_pred ceEEEEecccccCH---------------HHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--C-eEEEECCCCC
Confidence 56999999988742 355889999984 44567777777788899999887 4 3478999999
Q ss_pred HHHHHHHHHH
Q 003476 505 KIGREAILKV 514 (816)
Q Consensus 505 ~~eR~~ILk~ 514 (816)
.++..+.|..
T Consensus 151 ~~~l~~~l~~ 160 (299)
T PRK07132 151 QQKILAKLLS 160 (299)
T ss_pred HHHHHHHHHH
Confidence 8887766653
No 267
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.75 E-value=0.00022 Score=75.42 Aligned_cols=134 Identities=20% Similarity=0.201 Sum_probs=73.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCcc
Q 003476 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRF 444 (816)
Q Consensus 365 pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~ 444 (816)
..|..++||+|||||..+|++|..+|.+++.++|++-.+ ...+..+|.-+... -+-+++||++.+...-
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl~~~v---- 100 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRLSEEV---- 100 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCSSHHH----
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-CchhhhhhhhhhhHHH----
Confidence 356789999999999999999999999999999987544 34566677655543 4689999999885321
Q ss_pred ccccchHHHHHHHHHHhhcc-----C--CCCCCcEEEEEEcCC----CCCCCcccCCCCcccceEEecCCCHHHHHHHH
Q 003476 445 RIVSNDEREQTLNQLLTEMD-----G--FDSNSAVIVLGATNR----SDVLDPALRRPGRFDRVVMVETPDKIGREAIL 512 (816)
Q Consensus 445 ~~~~~~e~~~~Ln~LL~emD-----g--~~~~~~ViVIaATN~----pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~IL 512 (816)
.....+....+.+.+...-. + +.-+..+-++.|.|. ...|++.|+. +=|.|.+..||.....+++
T Consensus 101 LS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~---lFRpvam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 101 LSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA---LFRPVAMMVPDLSLIAEIL 176 (231)
T ss_dssp HHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT---TEEEEE--S--HHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH---HhheeEEeCCCHHHHHHHH
Confidence 01111111111111111110 0 001123334445553 2467777764 3468999999987655443
No 268
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.74 E-value=6.7e-05 Score=69.67 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcC
Q 003476 368 VLLVGLPGTGKTLLAKAVAGEAE 390 (816)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elg 390 (816)
|.|+||||+|||++|+.||..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999988664
No 269
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.74 E-value=7.6e-05 Score=78.38 Aligned_cols=73 Identities=26% Similarity=0.246 Sum_probs=41.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH-H---------HHhhcchHHHHHHHHHHHh--cCCEEEEEc
Q 003476 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV-E---------LYVGMGASRVRDLFARAKK--EAPSIIFID 431 (816)
Q Consensus 364 ~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~-~---------~~vG~~~~~vr~lF~~A~~--~aP~ILfID 431 (816)
.|..+||||+||+|||++|+.+++. ..++..+++.-. . .-.......+.+.+..+.. ....+|+||
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVID 88 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVID 88 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEe
Confidence 3667999999999999999999742 223333321100 0 0001111233333433332 335699999
Q ss_pred Cccchhh
Q 003476 432 EIDAVAK 438 (816)
Q Consensus 432 EIDaL~~ 438 (816)
.|+.+..
T Consensus 89 sI~~l~~ 95 (220)
T TIGR01618 89 NISALQN 95 (220)
T ss_pred cHHHHHH
Confidence 9998755
No 270
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.73 E-value=0.00041 Score=75.78 Aligned_cols=129 Identities=16% Similarity=0.236 Sum_probs=84.9
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-------EEEe-echhhHH--------HHh-h--cchHHHHHHHHHHHh
Q 003476 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC-SASEFVE--------LYV-G--MGASRVRDLFARAKK 422 (816)
Q Consensus 362 ~~~pkGVLL~GPPGTGKT~LAkALA~elgvp-------fi~i-s~s~~~~--------~~v-G--~~~~~vr~lF~~A~~ 422 (816)
.+.+..+||+|| +||+.+|+++|..+-+. +-.+ +|..+.. ... | -....+|++.+.+..
T Consensus 21 ~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~ 98 (290)
T PRK07276 21 DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQ 98 (290)
T ss_pred CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhh
Confidence 467788999996 68999999999876432 1111 1111110 000 1 123567777666543
Q ss_pred ----cCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceE
Q 003476 423 ----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVV 498 (816)
Q Consensus 423 ----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I 498 (816)
....|++||++|.+.. ..-|.||..++ ++..++++|..|+.++.|-|.+++ |. .++
T Consensus 99 ~p~~~~~kV~II~~ad~m~~---------------~AaNaLLKtLE--EPp~~t~~iL~t~~~~~lLpTI~S--Rc-q~i 158 (290)
T PRK07276 99 SGYEGKQQVFIIKDADKMHV---------------NAANSLLKVIE--EPQSEIYIFLLTNDENKVLPTIKS--RT-QIF 158 (290)
T ss_pred CcccCCcEEEEeehhhhcCH---------------HHHHHHHHHhc--CCCCCeEEEEEECChhhCchHHHH--cc-eee
Confidence 2236999999999853 35589999998 455668888889889999999988 53 477
Q ss_pred EecCCCHHHHHHHHH
Q 003476 499 MVETPDKIGREAILK 513 (816)
Q Consensus 499 ~v~~Pd~~eR~~ILk 513 (816)
.|+. +.++..+++.
T Consensus 159 ~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 159 HFPK-NEAYLIQLLE 172 (290)
T ss_pred eCCC-cHHHHHHHHH
Confidence 7755 4555444443
No 271
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.64 E-value=0.00018 Score=70.90 Aligned_cols=35 Identities=23% Similarity=0.444 Sum_probs=30.9
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEee
Q 003476 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (816)
Q Consensus 363 ~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is 397 (816)
.++..++|+||||||||++|++||..++.+++..+
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 35678999999999999999999999999998643
No 272
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.63 E-value=0.00022 Score=74.18 Aligned_cols=39 Identities=28% Similarity=0.293 Sum_probs=31.0
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeech
Q 003476 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (816)
Q Consensus 361 g~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s 399 (816)
|.....-++++||||+|||+++..+|.+. +.+++++++.
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 44455568999999999999999998743 6777777776
No 273
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.62 E-value=0.00091 Score=72.57 Aligned_cols=96 Identities=25% Similarity=0.366 Sum_probs=60.3
Q ss_pred cccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC-----CcEEE-------eech
Q 003476 333 DVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-----VPFIS-------CSAS 399 (816)
Q Consensus 333 DV~G~ee~K~~L~eiV~~-Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elg-----vpfi~-------is~s 399 (816)
-+.|+.-+++.+-..+.. +.++. -+.|--+=|+|++||||.++++.||+.+. -|++. +.-.
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 488999999887766554 44432 24466566899999999999999999752 12211 1111
Q ss_pred hhHHHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchh
Q 003476 400 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVA 437 (816)
Q Consensus 400 ~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~ 437 (816)
.-++.|-.+-...+++ .+...+.+|+++||.|.+.
T Consensus 157 ~~ie~Yk~eL~~~v~~---~v~~C~rslFIFDE~DKmp 191 (344)
T KOG2170|consen 157 SKIEDYKEELKNRVRG---TVQACQRSLFIFDEVDKLP 191 (344)
T ss_pred HHHHHHHHHHHHHHHH---HHHhcCCceEEechhhhcC
Confidence 1222232222233333 3445566799999999986
No 274
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.61 E-value=0.00028 Score=81.56 Aligned_cols=79 Identities=27% Similarity=0.417 Sum_probs=56.6
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHH------hhc--------chHHHHHHHHHHHhc
Q 003476 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY------VGM--------GASRVRDLFARAKKE 423 (816)
Q Consensus 361 g~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~~~------vG~--------~~~~vr~lF~~A~~~ 423 (816)
|..+..-+||+||||+|||+|+..+|... +.++++++..+-.+.. .|. ....+..+++..+..
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 34455568999999999999999998765 6788888876544321 111 113356677777777
Q ss_pred CCEEEEEcCccchhhc
Q 003476 424 APSIIFIDEIDAVAKS 439 (816)
Q Consensus 424 aP~ILfIDEIDaL~~~ 439 (816)
.|.+|+||+|..+...
T Consensus 156 ~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 156 KPDLVVIDSIQTMYSP 171 (446)
T ss_pred CCCEEEEechhhhccc
Confidence 8999999999988643
No 275
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.60 E-value=0.00023 Score=78.71 Aligned_cols=119 Identities=21% Similarity=0.224 Sum_probs=67.0
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH-H---hh------------cchHHHHHHHHHHH
Q 003476 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-Y---VG------------MGASRVRDLFARAK 421 (816)
Q Consensus 361 g~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~~-~---vG------------~~~~~vr~lF~~A~ 421 (816)
|....+-++|+||||||||+||-.++.++ |.+++.++..+..+. + .| ..+..+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 34445568899999999999988876543 667777765443221 0 01 11222223333345
Q ss_pred hcCCEEEEEcCccchhhccC--CccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcC
Q 003476 422 KEAPSIIFIDEIDAVAKSRD--GRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (816)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~--~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN 479 (816)
...+++|+||-+.++.+... +.+.........+.+++++..+.+.-...++.+|.+..
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 56789999999999875321 11000001123344555555555444456677776643
No 276
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.57 E-value=0.00017 Score=78.11 Aligned_cols=113 Identities=23% Similarity=0.374 Sum_probs=67.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcC----------CcEEEee-chhhHHHHhh-------------cchHHHHHHHHHHH
Q 003476 366 RGVLLVGLPGTGKTLLAKAVAGEAE----------VPFISCS-ASEFVELYVG-------------MGASRVRDLFARAK 421 (816)
Q Consensus 366 kGVLL~GPPGTGKT~LAkALA~elg----------vpfi~is-~s~~~~~~vG-------------~~~~~vr~lF~~A~ 421 (816)
++++|.||||+|||+|.+++++... .++..++ ..++...+.+ ....+...++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 6799999999999999999999763 2332222 1222221111 11122345666777
Q ss_pred hcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcc--------cCCCCc
Q 003476 422 KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPA--------LRRPGR 493 (816)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpA--------LlRpGR 493 (816)
.+.|.||++||+.. ...+..++..+. .++.+|++|+.++. ... |+..+-
T Consensus 192 ~~~P~villDE~~~-----------------~e~~~~l~~~~~-----~G~~vI~ttH~~~~-~~~~~r~~~~~l~~~~~ 248 (270)
T TIGR02858 192 SMSPDVIVVDEIGR-----------------EEDVEALLEALH-----AGVSIIATAHGRDV-EDLYKRPVFKELIENEA 248 (270)
T ss_pred hCCCCEEEEeCCCc-----------------HHHHHHHHHHHh-----CCCEEEEEechhHH-HHHHhChHHHHHHhcCc
Confidence 78999999999521 122444555543 35678888875432 222 233455
Q ss_pred ccceEEec
Q 003476 494 FDRVVMVE 501 (816)
Q Consensus 494 Fdr~I~v~ 501 (816)
|++.+.+.
T Consensus 249 ~~r~i~L~ 256 (270)
T TIGR02858 249 FERYVVLS 256 (270)
T ss_pred eEEEEEEe
Confidence 77776664
No 277
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.55 E-value=0.0012 Score=75.17 Aligned_cols=93 Identities=13% Similarity=0.186 Sum_probs=54.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHh----cCCcEEEeechhhHHHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhcc
Q 003476 365 PRGVLLVGLPGTGKTLLAKAVAGE----AEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSR 440 (816)
Q Consensus 365 pkGVLL~GPPGTGKT~LAkALA~e----lgvpfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r 440 (816)
..++++.||+|||||+++.+++.. .| -.++.+.++.... . ..+.. -....+|+|||+..+.-.+
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~----~---~~lg~--v~~~DlLI~DEvgylp~~~ 276 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIS----T---RQIGL--VGRWDVVAFDEVATLKFAK 276 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHH----H---HHHhh--hccCCEEEEEcCCCCcCCc
Confidence 356999999999999999998776 24 2233333332211 1 11111 2345699999998865322
Q ss_pred CCccccccchHHHHHHHHHHhhccCC---------CCCCcEEEEEEcCC
Q 003476 441 DGRFRIVSNDEREQTLNQLLTEMDGF---------DSNSAVIVLGATNR 480 (816)
Q Consensus 441 ~~~~~~~~~~e~~~~Ln~LL~emDg~---------~~~~~ViVIaATN~ 480 (816)
. ...+..|...|..- ..+..+++++.+|.
T Consensus 277 ~-----------~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~~ 314 (449)
T TIGR02688 277 P-----------KELIGILKNYMESGSFTRGDETKSSDASFVFLGNVPL 314 (449)
T ss_pred h-----------HHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccCC
Confidence 1 23445555555421 22345677777764
No 278
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.54 E-value=6.9e-05 Score=69.85 Aligned_cols=30 Identities=40% Similarity=0.697 Sum_probs=27.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEee
Q 003476 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (816)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgvpfi~is 397 (816)
|+|+||||+|||++|+.||..+|++++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 789999999999999999999998877654
No 279
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.54 E-value=6.2e-05 Score=92.38 Aligned_cols=208 Identities=15% Similarity=0.209 Sum_probs=123.2
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChh--HHhhhCCCC-CC-eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeech
Q 003476 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPD--KYIRLGARP-PR-GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS 399 (816)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~--~~~~lg~~~-pk-GVLL~GPPGTGKT~LAkALA~elgvpfi~is~s 399 (816)
+........++.|.......+.+-.+..++++ .|..-+-.. .+ .+|++||||+|||+.|.++|.+.|..++..+.+
T Consensus 312 ~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas 391 (871)
T KOG1968|consen 312 EKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNAS 391 (871)
T ss_pred cccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCcc
Confidence 34455556777776655444444333332221 121111111 12 369999999999999999999999999999988
Q ss_pred hhHHHHhh-----c--chHHHHHHHH---HHHh-cCC-EEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCC
Q 003476 400 EFVELYVG-----M--GASRVRDLFA---RAKK-EAP-SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD 467 (816)
Q Consensus 400 ~~~~~~vG-----~--~~~~vr~lF~---~A~~-~aP-~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~ 467 (816)
+....+.. . +...+...|. .... ... -||++||+|.+.....+ .-..+.++..
T Consensus 392 ~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg---------~v~~l~~l~~------ 456 (871)
T KOG1968|consen 392 DVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRG---------GVSKLSSLCK------ 456 (871)
T ss_pred ccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccchhhh---------hHHHHHHHHH------
Confidence 66543211 1 1122333331 0000 112 29999999998751110 0122333333
Q ss_pred CCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHH
Q 003476 468 SNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANL 547 (816)
Q Consensus 468 ~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~L 547 (816)
...+-+|+++|..+......+. |-+..++|..|+...+..-+...+....+.+.++ .++.+...+ ++||++.
T Consensus 457 -ks~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~-~l~~~s~~~----~~DiR~~ 528 (871)
T KOG1968|consen 457 -KSSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDD-VLEEISKLS----GGDIRQI 528 (871)
T ss_pred -hccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcH-HHHHHHHhc----ccCHHHH
Confidence 2334577788776555442222 4345789999999999888888877776665544 466666655 6788888
Q ss_pred HHHHHHH
Q 003476 548 VNEAALL 554 (816)
Q Consensus 548 vneAa~~ 554 (816)
++.-...
T Consensus 529 i~~lq~~ 535 (871)
T KOG1968|consen 529 IMQLQFW 535 (871)
T ss_pred HHHHhhh
Confidence 8775544
No 280
>PHA00729 NTP-binding motif containing protein
Probab=97.54 E-value=0.00014 Score=76.65 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=23.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcC
Q 003476 366 RGVLLVGLPGTGKTLLAKAVAGEAE 390 (816)
Q Consensus 366 kGVLL~GPPGTGKT~LAkALA~elg 390 (816)
.+++|+|+||||||+||.+||.+++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999999875
No 281
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.52 E-value=0.0008 Score=71.03 Aligned_cols=76 Identities=17% Similarity=0.221 Sum_probs=46.5
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhh----HHHH--hhc------------------------
Q 003476 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF----VELY--VGM------------------------ 408 (816)
Q Consensus 362 ~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~----~~~~--vG~------------------------ 408 (816)
.....-++++||||||||+|+..++... |.+.++++..+- .... .|.
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~ 100 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNS 100 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChH
Confidence 4445569999999999999986554432 566666664321 1110 000
Q ss_pred -chHHHHHHHHHHHhcCCEEEEEcCccchh
Q 003476 409 -GASRVRDLFARAKKEAPSIIFIDEIDAVA 437 (816)
Q Consensus 409 -~~~~vr~lF~~A~~~aP~ILfIDEIDaL~ 437 (816)
....+..+...+....|.+++|||+-.+.
T Consensus 101 ~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 101 EKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 01233344555555578899999998764
No 282
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.52 E-value=0.00043 Score=78.19 Aligned_cols=79 Identities=29% Similarity=0.434 Sum_probs=54.9
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHH------hhc--------chHHHHHHHHHHHhc
Q 003476 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY------VGM--------GASRVRDLFARAKKE 423 (816)
Q Consensus 361 g~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~~~------vG~--------~~~~vr~lF~~A~~~ 423 (816)
|..+..-+||+|+||+|||+|+..+|... +.+++++++.+-.+.. .+. ....+..+++.+...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 34455568999999999999999998754 4577777765432211 111 122355667777778
Q ss_pred CCEEEEEcCccchhhc
Q 003476 424 APSIIFIDEIDAVAKS 439 (816)
Q Consensus 424 aP~ILfIDEIDaL~~~ 439 (816)
.|.+|+||+|..+...
T Consensus 158 ~~~lVVIDSIq~l~~~ 173 (372)
T cd01121 158 KPDLVIIDSIQTVYSS 173 (372)
T ss_pred CCcEEEEcchHHhhcc
Confidence 8999999999998643
No 283
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=97.51 E-value=2.9e-05 Score=70.84 Aligned_cols=31 Identities=26% Similarity=0.451 Sum_probs=24.0
Q ss_pred CccceechHHHHHHHHcCCccEEEEeCcEEE
Q 003476 178 TTFVSVPYSDFLSKINSNQVAKVEVDGVHIM 208 (816)
Q Consensus 178 ~~~~~~~ys~f~~~~~~~~v~~v~~~~~~~~ 208 (816)
+...+++||+|+++|++|+|++|++.++.+.
T Consensus 25 ~~~~~i~YS~F~~~l~~g~V~~V~i~~~~~~ 55 (110)
T PF06480_consen 25 SQTKEISYSEFLQMLEKGNVKKVVIQNDKIT 55 (110)
T ss_dssp -SSEE--HHHHHHTGGGT-EEEEEEETTTEE
T ss_pred CCCcEECHHHHHHHHHcCCEEEEEEECCEEE
Confidence 3466899999999999999999999987666
No 284
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.50 E-value=0.00051 Score=71.07 Aligned_cols=38 Identities=26% Similarity=0.233 Sum_probs=29.4
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeech
Q 003476 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (816)
Q Consensus 362 ~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s 399 (816)
.....-++++||||+|||+|+..+|.+. +.++++++..
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 16 VERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 3444559999999999999999998764 5677777653
No 285
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.50 E-value=0.00011 Score=85.96 Aligned_cols=63 Identities=29% Similarity=0.387 Sum_probs=44.5
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC-CcEEEeec
Q 003476 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-VPFISCSA 398 (816)
Q Consensus 330 tf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elg-vpfi~is~ 398 (816)
-|+|+.|++++++.+.+.+ +.. ...++ ...+-++|+||||+|||+||++||..+. .|++.+.+
T Consensus 74 fF~d~yGlee~ieriv~~l---~~A--a~gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYF---RHA--AQGLE-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHH---HHH--HHhcC-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 4889999999988665544 221 11122 2335689999999999999999998663 46666544
No 286
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.50 E-value=0.00048 Score=71.13 Aligned_cols=104 Identities=21% Similarity=0.359 Sum_probs=59.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh-----cCCcE-------------EEeechhhHH----HHhhcchHHHHHHHHHHHhc
Q 003476 366 RGVLLVGLPGTGKTLLAKAVAGE-----AEVPF-------------ISCSASEFVE----LYVGMGASRVRDLFARAKKE 423 (816)
Q Consensus 366 kGVLL~GPPGTGKT~LAkALA~e-----lgvpf-------------i~is~s~~~~----~~vG~~~~~vr~lF~~A~~~ 423 (816)
+-++|+||+|+|||+|.|.++.. .|.++ ..++..+-+. .+. ....++.++++.+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~-~e~~~~~~iL~~~~~~ 104 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFY-AELRRLKEIVEKAKKG 104 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHH-HHHHHHHHHHHhccCC
Confidence 56899999999999999999863 34432 1111111111 111 1125567777777656
Q ss_pred CCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCC
Q 003476 424 APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL 484 (816)
Q Consensus 424 aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~L 484 (816)
.|.+|++||.-.- ............++..+.. .+..+|.+|+.++.+
T Consensus 105 ~p~llllDEp~~g----------lD~~~~~~l~~~ll~~l~~----~~~tiiivTH~~~~~ 151 (199)
T cd03283 105 EPVLFLLDEIFKG----------TNSRERQAASAAVLKFLKN----KNTIGIISTHDLELA 151 (199)
T ss_pred CCeEEEEecccCC----------CCHHHHHHHHHHHHHHHHH----CCCEEEEEcCcHHHH
Confidence 8999999996321 1112222334455555531 245677777766543
No 287
>PRK08118 topology modulation protein; Reviewed
Probab=97.49 E-value=0.00018 Score=72.25 Aligned_cols=32 Identities=28% Similarity=0.563 Sum_probs=29.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeec
Q 003476 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 398 (816)
Q Consensus 367 GVLL~GPPGTGKT~LAkALA~elgvpfi~is~ 398 (816)
.|+++||||+|||+||+.|+..+++|++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 48999999999999999999999999988764
No 288
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.47 E-value=0.00062 Score=71.47 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=30.5
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHh---cCCcEEEeech
Q 003476 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSAS 399 (816)
Q Consensus 361 g~~~pkGVLL~GPPGTGKT~LAkALA~e---lgvpfi~is~s 399 (816)
|...+..++++||||+|||+|+..++.+ .|.++++++..
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 4556667999999999999999999754 36677777654
No 289
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.47 E-value=0.00084 Score=67.07 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc
Q 003476 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (816)
Q Consensus 364 ~pkGVLL~GPPGTGKT~LAkALA~el 389 (816)
.+.-++++|+||+|||++++-+|..+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 34569999999999999999999765
No 290
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.46 E-value=0.0011 Score=76.29 Aligned_cols=37 Identities=32% Similarity=0.401 Sum_probs=29.5
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeech
Q 003476 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (816)
Q Consensus 363 ~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s 399 (816)
..|..++|+|++|+|||+++..+|..+ |..+..+++.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 467889999999999999999998765 5555555554
No 291
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.43 E-value=0.0018 Score=73.82 Aligned_cols=135 Identities=18% Similarity=0.178 Sum_probs=79.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCcccc
Q 003476 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRI 446 (816)
Q Consensus 367 GVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~ 446 (816)
-++|+||.+||||++++.+.....-.++.++..+........ ......+..+.....+.||||||+.+.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~--------- 107 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVP--------- 107 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCch---------
Confidence 799999999999999988888775545555554443322111 112222222322244699999998863
Q ss_pred ccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHHHH-------------HHH
Q 003476 447 VSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREA-------------ILK 513 (816)
Q Consensus 447 ~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~~-------------ILk 513 (816)
.+...+..+..... . .|++.+++...-....+-.-+||. ..+.+.+.+..|... .++
T Consensus 108 ----~W~~~lk~l~d~~~---~--~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~~~~~~~~~~~~~~~f~ 177 (398)
T COG1373 108 ----DWERALKYLYDRGN---L--DVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLKLKGEEIEPSKLELLFE 177 (398)
T ss_pred ----hHHHHHHHHHcccc---c--eEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHhhcccccchhHHHHHHH
Confidence 24556666555432 1 344444433222223333346884 578888888888864 466
Q ss_pred HHHhcCCCC
Q 003476 514 VHVSKKELP 522 (816)
Q Consensus 514 ~~l~~~~l~ 522 (816)
.++...++|
T Consensus 178 ~Yl~~GGfP 186 (398)
T COG1373 178 KYLETGGFP 186 (398)
T ss_pred HHHHhCCCc
Confidence 666655554
No 292
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.41 E-value=0.00048 Score=76.35 Aligned_cols=118 Identities=19% Similarity=0.213 Sum_probs=64.6
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH-H---hh------------cchHHHHHHHHHHHh
Q 003476 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-Y---VG------------MGASRVRDLFARAKK 422 (816)
Q Consensus 362 ~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~~-~---vG------------~~~~~vr~lF~~A~~ 422 (816)
....+-++++||||||||+||-.++.++ |.+++.++...-.+. + .| ..+..+..+-..++.
T Consensus 52 lp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s 131 (325)
T cd00983 52 YPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRS 131 (325)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhc
Confidence 3444458899999999999999887543 667777776432220 0 01 111222222233455
Q ss_pred cCCEEEEEcCccchhhccC--CccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcC
Q 003476 423 EAPSIIFIDEIDAVAKSRD--GRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (816)
Q Consensus 423 ~aP~ILfIDEIDaL~~~r~--~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN 479 (816)
..+++|+||-+-++.+... +.........+.+.+.+.+..|.+.-...++.+|.+..
T Consensus 132 ~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQ 190 (325)
T cd00983 132 GAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQ 190 (325)
T ss_pred cCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 6789999999998875321 11100001122334445555444443345666666543
No 293
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.41 E-value=0.00049 Score=65.82 Aligned_cols=36 Identities=33% Similarity=0.486 Sum_probs=29.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHH
Q 003476 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (816)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~~ 405 (816)
++++||||+|||++|+.++..++ ...++...+....
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~ 37 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRL 37 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHH
Confidence 78999999999999999999999 4456666665543
No 294
>PRK07261 topology modulation protein; Provisional
Probab=97.37 E-value=0.00028 Score=70.98 Aligned_cols=32 Identities=22% Similarity=0.526 Sum_probs=29.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEeech
Q 003476 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS 399 (816)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgvpfi~is~s 399 (816)
++++|+||+|||+||+.|+...+.|++..+.-
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~ 34 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDTL 34 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCCE
Confidence 89999999999999999999999998887643
No 295
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.36 E-value=0.00019 Score=73.49 Aligned_cols=124 Identities=19% Similarity=0.186 Sum_probs=60.4
Q ss_pred EEEEcCCCCcHHHHHHHH-HH---hcCCcEEEeechhhH-HHHhh---cchH-------------HHHHHHHHHHhcCCE
Q 003476 368 VLLVGLPGTGKTLLAKAV-AG---EAEVPFISCSASEFV-ELYVG---MGAS-------------RVRDLFARAKKEAPS 426 (816)
Q Consensus 368 VLL~GPPGTGKT~LAkAL-A~---elgvpfi~is~s~~~-~~~vG---~~~~-------------~vr~lF~~A~~~aP~ 426 (816)
.+++|.||+|||+.|-.. .. ..|.+++. +...+. +.... .... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 588999999999988665 43 33777666 443222 11000 0000 001111111112467
Q ss_pred EEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCC
Q 003476 427 IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPD 504 (816)
Q Consensus 427 ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd 504 (816)
+|+|||++.+.+.+... .......+ +++.+.. ..++-||.+|..+..||+.+++ ..+.++.+..++
T Consensus 82 liviDEa~~~~~~r~~~-----~~~~~~~~-~~l~~hR----h~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~~ 147 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWK-----GKKVPEII-EFLAQHR----HYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKLD 147 (193)
T ss_dssp EEEETTGGGTSB---T------T----HHH-HGGGGCC----CTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE--
T ss_pred EEEEECChhhcCCCccc-----cccchHHH-HHHHHhC----cCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEeec
Confidence 99999999998776531 01112333 4444433 4567888999999999998876 777777776553
No 296
>PF14516 AAA_35: AAA-like domain
Probab=97.35 E-value=0.01 Score=66.08 Aligned_cols=172 Identities=12% Similarity=0.099 Sum_probs=91.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH-------HHh---------------------h---cch
Q 003476 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE-------LYV---------------------G---MGA 410 (816)
Q Consensus 365 pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~-------~~v---------------------G---~~~ 410 (816)
+.-+.+.||..+|||+|...+...+ |...+.+++..+-. .+. . ...
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~ 110 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSK 110 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCCh
Confidence 4458999999999999999887654 77777777654311 000 0 011
Q ss_pred HHHHHHHHHH---HhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEE-EEEcCCCCCCCc
Q 003476 411 SRVRDLFARA---KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV-LGATNRSDVLDP 486 (816)
Q Consensus 411 ~~vr~lF~~A---~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViV-IaATN~pd~LDp 486 (816)
......|+.. ....|-||+|||||.+..... ..+..-..+..+...-........+.+ ++-+..+.....
T Consensus 111 ~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~------~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~ 184 (331)
T PF14516_consen 111 ISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ------IADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILD 184 (331)
T ss_pred hhHHHHHHHHHHhcCCCCEEEEEechhhhccCcc------hHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccC
Confidence 2233344432 224688999999999974211 111111222222221111111122333 322222222211
Q ss_pred ccCCCCcccceEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHHHHH
Q 003476 487 ALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLV 548 (816)
Q Consensus 487 ALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv 548 (816)
.-.+|-.+...|.++..+.++...+++.|- ....... ++.|-..|.|. |.=+..+|
T Consensus 185 ~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~----~~~~~~~-~~~l~~~tgGh-P~Lv~~~~ 240 (331)
T PF14516_consen 185 INQSPFNIGQPIELPDFTPEEVQELAQRYG----LEFSQEQ-LEQLMDWTGGH-PYLVQKAC 240 (331)
T ss_pred CCCCCcccccceeCCCCCHHHHHHHHHhhh----ccCCHHH-HHHHHHHHCCC-HHHHHHHH
Confidence 123443445577788888899888877763 2333333 78888888885 44333333
No 297
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.34 E-value=0.00047 Score=77.79 Aligned_cols=110 Identities=18% Similarity=0.324 Sum_probs=60.9
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc----C-CcEEEeechhhH-------HH---Hhhc------chHHHHHHHHHHH
Q 003476 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA----E-VPFISCSASEFV-------EL---YVGM------GASRVRDLFARAK 421 (816)
Q Consensus 363 ~~pkGVLL~GPPGTGKT~LAkALA~el----g-vpfi~is~s~~~-------~~---~vG~------~~~~vr~lF~~A~ 421 (816)
.....++|+||+|+|||+++..||..+ | ..+..+....+. .. ..|. ....+...+...
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l- 213 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL- 213 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh-
Confidence 445679999999999999999999763 3 234444433321 11 1111 111223333322
Q ss_pred hcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCC-CCcEEEEEEcCCCCCCCccc
Q 003476 422 KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS-NSAVIVLGATNRSDVLDPAL 488 (816)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~-~~~ViVIaATN~pd~LDpAL 488 (816)
...++|+||...... .+ ..+...+..+..... ...++|+.+|+..+.++..+
T Consensus 214 -~~~DlVLIDTaG~~~----------~d----~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 214 -RNKHMVLIDTIGMSQ----------RD----RTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred -cCCCEEEEcCCCCCc----------cc----HHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHH
Confidence 345799999975322 11 223444444443332 34578888888776665443
No 298
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.34 E-value=0.0021 Score=68.91 Aligned_cols=27 Identities=30% Similarity=0.382 Sum_probs=23.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCC
Q 003476 365 PRGVLLVGLPGTGKTLLAKAVAGEAEV 391 (816)
Q Consensus 365 pkGVLL~GPPGTGKT~LAkALA~elgv 391 (816)
..-++|.||+|+|||+|++.+++....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 445999999999999999999987754
No 299
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.33 E-value=0.0011 Score=75.15 Aligned_cols=131 Identities=14% Similarity=0.211 Sum_probs=70.0
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc-------CCc--EEEeechhh-----HHHH---------hhcchHHHHHHHHH
Q 003476 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVP--FISCSASEF-----VELY---------VGMGASRVRDLFAR 419 (816)
Q Consensus 363 ~~pkGVLL~GPPGTGKT~LAkALA~el-------gvp--fi~is~s~~-----~~~~---------vG~~~~~vr~lF~~ 419 (816)
..|+.++|+||+|+|||+.+..+|..+ +.. ++.+++-.. ...| .......+...+..
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 346789999999999999999998754 233 444443111 1111 11122334444443
Q ss_pred HHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCC-CcEEEEEEcCCCCCCCcccCCC--Ccccc
Q 003476 420 AKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN-SAVIVLGATNRSDVLDPALRRP--GRFDR 496 (816)
Q Consensus 420 A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~-~~ViVIaATN~pd~LDpALlRp--GRFdr 496 (816)
. ....+|+||++..... +.. .+..+...++..... ..++|+.+|.....+...+.+- -.++
T Consensus 252 ~--~~~DlVLIDTaGr~~~----------~~~---~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~- 315 (388)
T PRK12723 252 S--KDFDLVLVDTIGKSPK----------DFM---KLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYK- 315 (388)
T ss_pred h--CCCCEEEEcCCCCCcc----------CHH---HHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCC-
Confidence 3 3346999999876531 111 133444444433322 4678888887766665444321 1123
Q ss_pred eEEecCCCHHHHH
Q 003476 497 VVMVETPDKIGRE 509 (816)
Q Consensus 497 ~I~v~~Pd~~eR~ 509 (816)
.+.+...|...+.
T Consensus 316 ~~I~TKlDet~~~ 328 (388)
T PRK12723 316 TVIFTKLDETTCV 328 (388)
T ss_pred EEEEEeccCCCcc
Confidence 4445555544443
No 300
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.31 E-value=0.00075 Score=76.26 Aligned_cols=73 Identities=25% Similarity=0.345 Sum_probs=44.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcC-----CcEEEeechhh-------HHH---------HhhcchHHHH---HHHHHHHh-
Q 003476 368 VLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSASEF-------VEL---------YVGMGASRVR---DLFARAKK- 422 (816)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elg-----vpfi~is~s~~-------~~~---------~vG~~~~~vr---~lF~~A~~- 422 (816)
.||+||||+|||+|++.|++... +.++.+-..+. ... +......+++ .+++.|+.
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~ 251 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRL 251 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999998663 33333222222 111 1111222333 33444432
Q ss_pred ---cCCEEEEEcCccchhhcc
Q 003476 423 ---EAPSIIFIDEIDAVAKSR 440 (816)
Q Consensus 423 ---~aP~ILfIDEIDaL~~~r 440 (816)
....+||||||+.+.+..
T Consensus 252 ~e~G~dVlL~iDsItR~arAq 272 (416)
T PRK09376 252 VEHGKDVVILLDSITRLARAY 272 (416)
T ss_pred HHcCCCEEEEEEChHHHHHHH
Confidence 356799999999987644
No 301
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.27 E-value=0.0009 Score=68.88 Aligned_cols=66 Identities=24% Similarity=0.432 Sum_probs=42.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCC----cEEEeech-hhHH---------HHhhcchHHHHHHHHHHHhcCCEEEEEcCc
Q 003476 368 VLLVGLPGTGKTLLAKAVAGEAEV----PFISCSAS-EFVE---------LYVGMGASRVRDLFARAKKEAPSIIFIDEI 433 (816)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgv----pfi~is~s-~~~~---------~~vG~~~~~vr~lF~~A~~~aP~ILfIDEI 433 (816)
++++||+|+|||++++++++.... .++.+... ++.. .-++.....+.+.+..+....|.+|++||+
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gEi 83 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGEM 83 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcCC
Confidence 789999999999999999887642 22222111 1110 011222234556667777778999999997
No 302
>PRK10536 hypothetical protein; Provisional
Probab=97.25 E-value=0.00099 Score=71.51 Aligned_cols=46 Identities=24% Similarity=0.310 Sum_probs=31.6
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHh
Q 003476 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (816)
Q Consensus 329 vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~e 388 (816)
..+.-+.+.......+...+ .+. .-+++.||+|||||+||.++|.+
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al---~~~-----------~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAI---ESK-----------QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred cCCccccCCCHHHHHHHHHH---hcC-----------CeEEEECCCCCCHHHHHHHHHHH
Confidence 34445666666555544433 221 25899999999999999999885
No 303
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.24 E-value=0.0016 Score=59.96 Aligned_cols=24 Identities=46% Similarity=0.450 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 003476 366 RGVLLVGLPGTGKTLLAKAVAGEA 389 (816)
Q Consensus 366 kGVLL~GPPGTGKT~LAkALA~el 389 (816)
++++++||+|+|||+++-.++.++
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999998887765
No 304
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.23 E-value=0.00026 Score=75.82 Aligned_cols=100 Identities=23% Similarity=0.327 Sum_probs=62.3
Q ss_pred CCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc---EEEeec-hhh
Q 003476 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP---FISCSA-SEF 401 (816)
Q Consensus 326 ~~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvp---fi~is~-s~~ 401 (816)
....+++++.-.....+.+.+++...- +...++++.||+|+|||++++++..+..-. ++.+.- .++
T Consensus 98 ~~~~sle~l~~~~~~~~~~~~~l~~~v----------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 98 SKPFSLEDLGESGSIPEEIAEFLRSAV----------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp SS--CHCCCCHTHHCHHHHHHHHHHCH----------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred cccccHhhccCchhhHHHHHHHHhhcc----------ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 355688888877766666666554421 123569999999999999999999877433 333321 111
Q ss_pred HHH------Hh-hcchHHHHHHHHHHHhcCCEEEEEcCccc
Q 003476 402 VEL------YV-GMGASRVRDLFARAKKEAPSIIFIDEIDA 435 (816)
Q Consensus 402 ~~~------~v-G~~~~~vr~lF~~A~~~aP~ILfIDEIDa 435 (816)
.-. +. ........+++..+....|++|+|+||..
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 110 00 12344677888888899999999999853
No 305
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.22 E-value=0.0013 Score=68.52 Aligned_cols=108 Identities=23% Similarity=0.242 Sum_probs=62.3
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc----CCcEEEeechhhHH--------------HHhh---------------
Q 003476 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVE--------------LYVG--------------- 407 (816)
Q Consensus 361 g~~~pkGVLL~GPPGTGKT~LAkALA~el----gvpfi~is~s~~~~--------------~~vG--------------- 407 (816)
|...+..+|++||||||||+|+..++.+. |-++++++..+-.+ .+..
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 45566679999999999999999876433 77877776532221 0100
Q ss_pred ----cchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcC
Q 003476 408 ----MGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (816)
Q Consensus 408 ----~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN 479 (816)
....-+..+.+..+...+++++||-+..+. ... ........+..+...+. ..++.+|.+..
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~-~~~------~~~~~r~~l~~l~~~l~----~~~~t~llt~~ 159 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSALL-LYD------DPEELRRFLRALIKFLK----SRGVTTLLTSE 159 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHT-TSS------SGGGHHHHHHHHHHHHH----HTTEEEEEEEE
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHh-hcC------CHHHHHHHHHHHHHHHH----HCCCEEEEEEc
Confidence 011122333344455677899999999982 211 22334455666666664 23455555554
No 306
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.22 E-value=0.001 Score=69.38 Aligned_cols=117 Identities=20% Similarity=0.214 Sum_probs=64.5
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---------CCcEEEeechhh------HHHH--hh---------------c
Q 003476 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASEF------VELY--VG---------------M 408 (816)
Q Consensus 361 g~~~pkGVLL~GPPGTGKT~LAkALA~el---------gvpfi~is~s~~------~~~~--vG---------------~ 408 (816)
|.+...-+.|+||||||||+|+..++... +...++++..+- .+.. .+ .
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 44555568999999999999999998543 256667765431 1100 00 0
Q ss_pred chHHH----HHHHHHHHhc-CCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcC
Q 003476 409 GASRV----RDLFARAKKE-APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (816)
Q Consensus 409 ~~~~v----r~lF~~A~~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN 479 (816)
....+ ..+-...... .+++|+||-+.++....... .....++.+.+.+++..|..+....++.||.+..
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~--~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~ 168 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDG--RGELAERQQHLAKLLRTLKRLADEFNVAVVITNQ 168 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 00111 2222223344 78999999999875421100 0011344455666666665444445666665543
No 307
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.21 E-value=0.00083 Score=69.66 Aligned_cols=116 Identities=21% Similarity=0.192 Sum_probs=65.2
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---C------CcEEEeechhh------HHHHh--h---------------c
Q 003476 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---E------VPFISCSASEF------VELYV--G---------------M 408 (816)
Q Consensus 361 g~~~pkGVLL~GPPGTGKT~LAkALA~el---g------vpfi~is~s~~------~~~~v--G---------------~ 408 (816)
|.....-+.|+||||+|||+|+..+|... + ..+++++..+- ..... + .
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 44555568999999999999999998753 2 55666665431 11000 0 0
Q ss_pred chHHHHHHHHHH----HhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEc
Q 003476 409 GASRVRDLFARA----KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (816)
Q Consensus 409 ~~~~vr~lF~~A----~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaAT 478 (816)
....+...+... ....+++|+||-|..+....... .....++.+.+.+++..|..+....++.||.++
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~--~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tn 166 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIG--RGMLAERARLLSQALRKLLRLADKFNVAVVFTN 166 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcC--CchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEE
Confidence 111222222222 24567899999999886432110 001234445566666666555444566666555
No 308
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.21 E-value=0.0027 Score=67.08 Aligned_cols=40 Identities=33% Similarity=0.409 Sum_probs=30.6
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHh---cCCcEEEeechh
Q 003476 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASE 400 (816)
Q Consensus 361 g~~~pkGVLL~GPPGTGKT~LAkALA~e---lgvpfi~is~s~ 400 (816)
|..+...+|++||||||||+||..++.+ .|-+.++++..+
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 5566677999999999999999877554 367777776543
No 309
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.21 E-value=0.001 Score=64.11 Aligned_cols=52 Identities=25% Similarity=0.383 Sum_probs=39.9
Q ss_pred ccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 003476 332 ADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (816)
Q Consensus 332 ~DV~G~ee~K~~L~eiV~~-Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el 389 (816)
+.|.|++-|++.+...+.. +.++ .-+.|.-+-|+||||||||.+++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANP------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCC------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4699999999988776655 4443 12345556699999999999999999975
No 310
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.20 E-value=0.0021 Score=72.09 Aligned_cols=158 Identities=20% Similarity=0.278 Sum_probs=84.6
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE--EEeechhhHHHHhhcchHHHHHHH----------------------
Q 003476 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF--ISCSASEFVELYVGMGASRVRDLF---------------------- 417 (816)
Q Consensus 362 ~~~pkGVLL~GPPGTGKT~LAkALA~elgvpf--i~is~s~~~~~~vG~~~~~vr~lF---------------------- 417 (816)
-.+|+|++|||.-|||||+|.-.+-..+-... -.+...+|+... -+++.++-
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~V----H~r~H~~k~~~~~~~~~~a~~~~~Dpl~~v 186 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSV----HKRMHELKQEQGAEKPGYAKSWEIDPLPVV 186 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHHH----HHHHHHHHHhccccCccccccccCCccHHH
Confidence 35699999999999999999998876542100 011112222110 01111110
Q ss_pred HHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCC-CCCCcccCCCCcccc
Q 003476 418 ARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS-DVLDPALRRPGRFDR 496 (816)
Q Consensus 418 ~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~p-d~LDpALlRpGRFdr 496 (816)
..-.....++|++||+..-- -.-.-+|+.|...+- +.||+++||+||. +.|-..=+ .|
T Consensus 187 A~eIa~ea~lLCFDEfQVTD------------VADAmiL~rLf~~Lf----~~GvVlvATSNR~P~dLYknGl-----QR 245 (467)
T KOG2383|consen 187 ADEIAEEAILLCFDEFQVTD------------VADAMILKRLFEHLF----KNGVVLVATSNRAPEDLYKNGL-----QR 245 (467)
T ss_pred HHHHhhhceeeeechhhhhh------------HHHHHHHHHHHHHHH----hCCeEEEEeCCCChHHHhhcch-----hh
Confidence 01111224699999985421 111234555555543 3589999999984 44433222 22
Q ss_pred eEEecCCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhC-C--CCCH-HHHHHHHHHHH
Q 003476 497 VVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT-T--GFTG-ADLANLVNEAA 552 (816)
Q Consensus 497 ~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t-~--G~Sg-aDL~~LvneAa 552 (816)
...++ -..+|+.++.- +.++..+|....+.-. . -|.+ .|...++++--
T Consensus 246 ~~F~P------fI~~L~~rc~v--i~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~f 297 (467)
T KOG2383|consen 246 ENFIP------FIALLEERCKV--IQLDSGVDYRRKAKSAGENYYFISETDVETVLKEWF 297 (467)
T ss_pred hhhhh------HHHHHHHhheE--EecCCccchhhccCCCCceeEecChhhHHHHHHHHH
Confidence 33332 34567777654 3567778887333211 1 1233 37777777765
No 311
>PRK06762 hypothetical protein; Provisional
Probab=97.18 E-value=0.0014 Score=64.92 Aligned_cols=40 Identities=20% Similarity=0.191 Sum_probs=33.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 003476 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (816)
Q Consensus 365 pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~ 404 (816)
|.-++|+|+||+|||++|+.++..++..++.++...+...
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~ 41 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRD 41 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHH
Confidence 5668999999999999999999998766777777666553
No 312
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.18 E-value=0.0063 Score=66.47 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=24.5
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcC
Q 003476 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (816)
Q Consensus 363 ~~pkGVLL~GPPGTGKT~LAkALA~elg 390 (816)
..|..+.|+|+=|+|||++.+.+-+++.
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~ 45 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELK 45 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5677899999999999999999987663
No 313
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.16 E-value=0.0011 Score=70.44 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 003476 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (816)
Q Consensus 366 kGVLL~GPPGTGKT~LAkALA~e 388 (816)
--+-|.||+|||||+|.+.+|+-
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 34899999999999999999984
No 314
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.16 E-value=0.00069 Score=68.28 Aligned_cols=27 Identities=41% Similarity=0.673 Sum_probs=22.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCcE
Q 003476 367 GVLLVGLPGTGKTLLAKAVAGEA---EVPF 393 (816)
Q Consensus 367 GVLL~GPPGTGKT~LAkALA~el---gvpf 393 (816)
.++|+|+||+|||++++.++..+ ++++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 48999999999999999999887 5553
No 315
>PRK13948 shikimate kinase; Provisional
Probab=97.16 E-value=0.0014 Score=67.00 Aligned_cols=43 Identities=30% Similarity=0.491 Sum_probs=35.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHHhh
Q 003476 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVG 407 (816)
Q Consensus 363 ~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~~vG 407 (816)
++|..|+|+|.+|+|||++++.+|..++.+|+..+ .+++...|
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D--~~ie~~~g 50 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD--RYIERVTG 50 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC--HHHHHHHh
Confidence 46688999999999999999999999999998655 34443333
No 316
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.14 E-value=0.001 Score=66.17 Aligned_cols=106 Identities=22% Similarity=0.221 Sum_probs=62.8
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCC--cEEEeechhh--------HHHHhh-----cchHHHHHHHHHHHhcCCE
Q 003476 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASEF--------VELYVG-----MGASRVRDLFARAKKEAPS 426 (816)
Q Consensus 362 ~~~pkGVLL~GPPGTGKT~LAkALA~elgv--pfi~is~s~~--------~~~~vG-----~~~~~vr~lF~~A~~~aP~ 426 (816)
..+...+.|.||+|+|||+|.+.+++.... --+.+++.+. ....++ .+..+.+-.+..|....|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 345556899999999999999999987521 0122222111 111111 1223455567777778899
Q ss_pred EEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCC
Q 003476 427 IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (816)
Q Consensus 427 ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd 482 (816)
|+++||--. +.+....+.+..++.++. .+ +..+|.+|+..+
T Consensus 103 illlDEP~~-----------~LD~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~ 143 (163)
T cd03216 103 LLILDEPTA-----------ALTPAEVERLFKVIRRLR---AQ-GVAVIFISHRLD 143 (163)
T ss_pred EEEEECCCc-----------CCCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHH
Confidence 999999633 234455566666666653 12 345555666544
No 317
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.14 E-value=0.00075 Score=65.37 Aligned_cols=39 Identities=31% Similarity=0.659 Sum_probs=31.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHHhh
Q 003476 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVG 407 (816)
Q Consensus 367 GVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~~vG 407 (816)
+++|+|+||+|||++|+.+|..++.+++..+ .+.....+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d--~~~~~~~~ 39 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD--ELIEQRAG 39 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch--HHHHHHcC
Confidence 3899999999999999999999999988554 44444333
No 318
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.14 E-value=0.016 Score=63.90 Aligned_cols=122 Identities=16% Similarity=0.140 Sum_probs=63.3
Q ss_pred CCEEEEEcCccchhhccCCc--cccccchHHHHHHHHHHhhccCCCC-CCcEEE--EEEcCC---CC--CCCcccCCCCc
Q 003476 424 APSIIFIDEIDAVAKSRDGR--FRIVSNDEREQTLNQLLTEMDGFDS-NSAVIV--LGATNR---SD--VLDPALRRPGR 493 (816)
Q Consensus 424 aP~ILfIDEIDaL~~~r~~~--~~~~~~~e~~~~Ln~LL~emDg~~~-~~~ViV--IaATN~---pd--~LDpALlRpGR 493 (816)
-|.++-||++.++.....=. ....-+...-.....|+..+.+-.. ..+.+| +++|.. +. .++.+|....-
T Consensus 156 ~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~~~~~l~~~L~~~~~ 235 (309)
T PF10236_consen 156 PPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAPKSPTLPVALGGKEG 235 (309)
T ss_pred CceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccccCCccchhhhccccC
Confidence 47788899999998652100 0011122333445555555333222 334444 555532 22 45555543211
Q ss_pred ------cc-------------ceEEecCCCHHHHHHHHHHHHhcCCCCC--ccccCHHHHHhhCCCCCHHHHHH
Q 003476 494 ------FD-------------RVVMVETPDKIGREAILKVHVSKKELPL--AKDIDLGDIASMTTGFTGADLAN 546 (816)
Q Consensus 494 ------Fd-------------r~I~v~~Pd~~eR~~ILk~~l~~~~l~l--~~dvdl~~LA~~t~G~SgaDL~~ 546 (816)
|. ..|.++..+.+|-..+++.+....-+.- .++.-.+.+...+ |.+++++..
T Consensus 236 ~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s-~GNp~el~k 308 (309)
T PF10236_consen 236 FPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSS-NGNPRELEK 308 (309)
T ss_pred CCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhc-CCCHHHhcc
Confidence 11 1678888999999999999887643321 1111223333333 447777653
No 319
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.13 E-value=0.0011 Score=67.13 Aligned_cols=32 Identities=31% Similarity=0.690 Sum_probs=29.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEEee
Q 003476 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (816)
Q Consensus 366 kGVLL~GPPGTGKT~LAkALA~elgvpfi~is 397 (816)
+.+.|+|++|+|||++.|++|+.++.+|+..+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46999999999999999999999999998764
No 320
>PRK14974 cell division protein FtsY; Provisional
Probab=97.13 E-value=0.0021 Score=71.68 Aligned_cols=73 Identities=25% Similarity=0.321 Sum_probs=44.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhH-------HHH---hh----------cchHHHHHHHHHH
Q 003476 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV-------ELY---VG----------MGASRVRDLFARA 420 (816)
Q Consensus 364 ~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~-------~~~---vG----------~~~~~vr~lF~~A 420 (816)
.|.-++|+||||+|||+++..+|..+ +..+..+++..+. ..+ .| .....+.+..+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 46789999999999999888887654 5555445543221 111 11 0112234445555
Q ss_pred HhcCCEEEEEcCccch
Q 003476 421 KKEAPSIIFIDEIDAV 436 (816)
Q Consensus 421 ~~~aP~ILfIDEIDaL 436 (816)
+.....+|+||....+
T Consensus 219 ~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 219 KARGIDVVLIDTAGRM 234 (336)
T ss_pred HhCCCCEEEEECCCcc
Confidence 5555569999997554
No 321
>PRK13947 shikimate kinase; Provisional
Probab=97.12 E-value=0.00044 Score=68.61 Aligned_cols=31 Identities=39% Similarity=0.615 Sum_probs=28.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEee
Q 003476 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (816)
Q Consensus 367 GVLL~GPPGTGKT~LAkALA~elgvpfi~is 397 (816)
+|+|.|+||||||++++.+|..++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5999999999999999999999999997654
No 322
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.09 E-value=0.00035 Score=69.38 Aligned_cols=59 Identities=29% Similarity=0.459 Sum_probs=35.7
Q ss_pred ccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc---EEEeechhh
Q 003476 334 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP---FISCSASEF 401 (816)
Q Consensus 334 V~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvp---fi~is~s~~ 401 (816)
++|.++..++|...++. . ....++.++|+|++|+|||+|++++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~~-~--------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-A--------QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-T--------SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-H--------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 56778766666665541 1 23446789999999999999999997765333 777777655
No 323
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.09 E-value=0.001 Score=78.63 Aligned_cols=105 Identities=31% Similarity=0.463 Sum_probs=64.1
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc-------CCc----EEEee------chhhHH--HHhh--------------
Q 003476 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVP----FISCS------ASEFVE--LYVG-------------- 407 (816)
Q Consensus 361 g~~~pkGVLL~GPPGTGKT~LAkALA~el-------gvp----fi~is------~s~~~~--~~vG-------------- 407 (816)
..++...+|+.||+|||||+|.||+|+-. +.| .+.+. ...+.+ .|+.
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL 494 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVL 494 (604)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHH
Confidence 45566779999999999999999999832 223 11111 001111 0000
Q ss_pred ----------------------cchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccC
Q 003476 408 ----------------------MGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG 465 (816)
Q Consensus 408 ----------------------~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg 465 (816)
.+..+-|-.|..+--++|.++||||.-. ..+++.+..+.+++.+.-
T Consensus 495 ~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATs-----------ALDe~~e~~l~q~l~~~l- 562 (604)
T COG4178 495 HKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATS-----------ALDEETEDRLYQLLKEEL- 562 (604)
T ss_pred HHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchh-----------ccChHHHHHHHHHHHhhC-
Confidence 0112335567777778999999999743 345555666666666421
Q ss_pred CCCCCcEEEEEEcCCC
Q 003476 466 FDSNSAVIVLGATNRS 481 (816)
Q Consensus 466 ~~~~~~ViVIaATN~p 481 (816)
.++.||..+.++
T Consensus 563 ----p~~tvISV~Hr~ 574 (604)
T COG4178 563 ----PDATVISVGHRP 574 (604)
T ss_pred ----CCCEEEEeccch
Confidence 456788777765
No 324
>PRK04040 adenylate kinase; Provisional
Probab=97.08 E-value=0.0052 Score=63.00 Aligned_cols=31 Identities=23% Similarity=0.460 Sum_probs=26.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc--CCcEEE
Q 003476 365 PRGVLLVGLPGTGKTLLAKAVAGEA--EVPFIS 395 (816)
Q Consensus 365 pkGVLL~GPPGTGKT~LAkALA~el--gvpfi~ 395 (816)
|+-++++|+||||||++++.++.++ +.+++.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~ 34 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVN 34 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEe
Confidence 5678999999999999999999999 666644
No 325
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.07 E-value=0.0024 Score=74.01 Aligned_cols=78 Identities=26% Similarity=0.400 Sum_probs=53.5
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHH------hhc--------chHHHHHHHHHHHhc
Q 003476 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY------VGM--------GASRVRDLFARAKKE 423 (816)
Q Consensus 361 g~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~~~------vG~--------~~~~vr~lF~~A~~~ 423 (816)
|..+..-+||+|+||+|||+|+..+|... +.++++++..+-.+.. .|. .+..+..+...+...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 34455558999999999999999997754 4577777765433211 111 112345566666777
Q ss_pred CCEEEEEcCccchhh
Q 003476 424 APSIIFIDEIDAVAK 438 (816)
Q Consensus 424 aP~ILfIDEIDaL~~ 438 (816)
.|.+|+||.|..+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 899999999998754
No 326
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.06 E-value=0.0014 Score=67.51 Aligned_cols=98 Identities=27% Similarity=0.367 Sum_probs=52.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH----HHhhcchHHHHHHHHHHH---------hcCCEEEE
Q 003476 366 RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE----LYVGMGASRVRDLFARAK---------KEAPSIIF 429 (816)
Q Consensus 366 kGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~----~~vG~~~~~vr~lF~~A~---------~~aP~ILf 429 (816)
+-+++.||||||||++++.++..+ +..++.+..+.-.. ...+.....+..++.... .....+|+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 357889999999999999986543 66776665432211 111222223333322221 12236999
Q ss_pred EcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCC
Q 003476 430 IDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (816)
Q Consensus 430 IDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~ 480 (816)
|||+-.+.. ..+..++..+.. ...++++++-.+.
T Consensus 99 VDEasmv~~---------------~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 99 VDEASMVDS---------------RQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp ESSGGG-BH---------------HHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred EecccccCH---------------HHHHHHHHHHHh--cCCEEEEECCcch
Confidence 999877642 345566666652 2346777776653
No 327
>PRK13946 shikimate kinase; Provisional
Probab=97.05 E-value=0.0017 Score=65.85 Aligned_cols=34 Identities=35% Similarity=0.624 Sum_probs=31.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEee
Q 003476 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (816)
Q Consensus 364 ~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is 397 (816)
.++.|+|+|+||+|||++++.||..+|++|+..+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 4577999999999999999999999999998765
No 328
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.04 E-value=0.0014 Score=73.24 Aligned_cols=69 Identities=23% Similarity=0.372 Sum_probs=45.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCC----cEEEeec-hhhHH---------HHhhcchHHHHHHHHHHHhcCCEEEEEc
Q 003476 366 RGVLLVGLPGTGKTLLAKAVAGEAEV----PFISCSA-SEFVE---------LYVGMGASRVRDLFARAKKEAPSIIFID 431 (816)
Q Consensus 366 kGVLL~GPPGTGKT~LAkALA~elgv----pfi~is~-s~~~~---------~~vG~~~~~vr~lF~~A~~~aP~ILfID 431 (816)
..+|++||+|+|||++++++.+...- .++.+.- .++.. .-+|.......+.++.+....|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 45899999999999999999986642 2333321 11110 0122222345667777788899999999
Q ss_pred Ccc
Q 003476 432 EID 434 (816)
Q Consensus 432 EID 434 (816)
|+.
T Consensus 203 Eir 205 (343)
T TIGR01420 203 EMR 205 (343)
T ss_pred CCC
Confidence 983
No 329
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.04 E-value=0.0032 Score=69.34 Aligned_cols=160 Identities=20% Similarity=0.336 Sum_probs=91.9
Q ss_pred ccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHH-HH--hcCCcEEEeechhhHHH------
Q 003476 334 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAV-AG--EAEVPFISCSASEFVEL------ 404 (816)
Q Consensus 334 V~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkAL-A~--elgvpfi~is~s~~~~~------ 404 (816)
+.|..+..+.+.+++..--- ..-...|+++||.|+|||.|.... +. +.|-.|+.+....+...
T Consensus 26 l~g~~~~~~~l~~~lkqt~~--------~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~ 97 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTIL--------HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALK 97 (408)
T ss_pred eeehHHHHHHHHHHHHHHHH--------hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHH
Confidence 56777767777777654110 122456999999999999876544 33 67777776654433211
Q ss_pred ---------------HhhcchHHHHHHHHHHHh-----cCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhcc
Q 003476 405 ---------------YVGMGASRVRDLFARAKK-----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD 464 (816)
Q Consensus 405 ---------------~vG~~~~~vr~lF~~A~~-----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emD 464 (816)
-.|.....+..++...+. ..+.|.++||||.+.+.. +.-.+..|+..-.
T Consensus 98 ~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~-----------rQtllYnlfDisq 166 (408)
T KOG2228|consen 98 GITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS-----------RQTLLYNLFDISQ 166 (408)
T ss_pred HHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch-----------hhHHHHHHHHHHh
Confidence 112222333333333322 224355567999876421 1122333333322
Q ss_pred CCCCCCcEEEEEEcCCCCCCC---cccCCCCcccce-EEecCC-CHHHHHHHHHHHH
Q 003476 465 GFDSNSAVIVLGATNRSDVLD---PALRRPGRFDRV-VMVETP-DKIGREAILKVHV 516 (816)
Q Consensus 465 g~~~~~~ViVIaATN~pd~LD---pALlRpGRFdr~-I~v~~P-d~~eR~~ILk~~l 516 (816)
..+.+|.||+-|.+.+.++ ....+ ||... |++.++ ...+-.++++..+
T Consensus 167 --s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 167 --SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred --hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 2356789999998876554 55555 88644 655543 4677888888776
No 330
>PRK05973 replicative DNA helicase; Provisional
Probab=97.03 E-value=0.0085 Score=63.79 Aligned_cols=39 Identities=36% Similarity=0.342 Sum_probs=29.3
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeech
Q 003476 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (816)
Q Consensus 361 g~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s 399 (816)
|..+..-++|.|+||+|||+|+-.+|.+. |.+.++++..
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 34445568999999999999998887644 7777666644
No 331
>PRK03839 putative kinase; Provisional
Probab=97.03 E-value=0.00053 Score=68.95 Aligned_cols=30 Identities=27% Similarity=0.554 Sum_probs=27.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEee
Q 003476 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (816)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgvpfi~is 397 (816)
|+|.|+||+|||++++.||..++.+|+.++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 899999999999999999999999997753
No 332
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.01 E-value=0.0026 Score=68.04 Aligned_cols=38 Identities=26% Similarity=0.249 Sum_probs=29.5
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc----CCcEEEeec
Q 003476 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSA 398 (816)
Q Consensus 361 g~~~pkGVLL~GPPGTGKT~LAkALA~el----gvpfi~is~ 398 (816)
|..+..-++|.||||+|||+++..+|..+ |.+++.++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 44556668999999999999999887653 667766665
No 333
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.01 E-value=0.00075 Score=68.61 Aligned_cols=71 Identities=27% Similarity=0.407 Sum_probs=46.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcC--CcEEEeech-hhH-------HH------HhhcchHHHHHHHHHHHhcCCEE
Q 003476 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSAS-EFV-------EL------YVGMGASRVRDLFARAKKEAPSI 427 (816)
Q Consensus 364 ~pkGVLL~GPPGTGKT~LAkALA~elg--vpfi~is~s-~~~-------~~------~vG~~~~~vr~lF~~A~~~aP~I 427 (816)
....++|.||+|+|||++++++++... ...+.+... ++. .. ..+.....+.+++..+....|.+
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~ 103 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDR 103 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCE
Confidence 456799999999999999999998753 122222111 110 00 00112234667777788888999
Q ss_pred EEEcCcc
Q 003476 428 IFIDEID 434 (816)
Q Consensus 428 LfIDEID 434 (816)
++++|+-
T Consensus 104 i~igEir 110 (186)
T cd01130 104 IIVGEVR 110 (186)
T ss_pred EEEEccC
Confidence 9999983
No 334
>PRK00625 shikimate kinase; Provisional
Probab=97.00 E-value=0.00064 Score=68.84 Aligned_cols=31 Identities=39% Similarity=0.641 Sum_probs=28.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEee
Q 003476 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (816)
Q Consensus 367 GVLL~GPPGTGKT~LAkALA~elgvpfi~is 397 (816)
.|+|+|.||+|||++++.+|..++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998765
No 335
>PRK13949 shikimate kinase; Provisional
Probab=96.99 E-value=0.0012 Score=66.36 Aligned_cols=32 Identities=44% Similarity=0.635 Sum_probs=29.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEEee
Q 003476 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (816)
Q Consensus 366 kGVLL~GPPGTGKT~LAkALA~elgvpfi~is 397 (816)
+.|+|+||||+|||++++.+|+.++++|+..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 35999999999999999999999999998865
No 336
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.99 E-value=0.00062 Score=74.73 Aligned_cols=70 Identities=26% Similarity=0.369 Sum_probs=48.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEeech-hhH-------HHHhhcchHHHHHHHHHHHhcCCEEEEEc
Q 003476 365 PRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSAS-EFV-------ELYVGMGASRVRDLFARAKKEAPSIIFID 431 (816)
Q Consensus 365 pkGVLL~GPPGTGKT~LAkALA~el-----gvpfi~is~s-~~~-------~~~vG~~~~~vr~lF~~A~~~aP~ILfID 431 (816)
.+++|++||+|+|||++++++++.. +..++.+.-. ++. ..........+.++++.+....|..|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 3579999999999999999999876 2333333211 111 01112222267788889999999999999
Q ss_pred Ccc
Q 003476 432 EID 434 (816)
Q Consensus 432 EID 434 (816)
|+-
T Consensus 212 EiR 214 (299)
T TIGR02782 212 EVR 214 (299)
T ss_pred ccC
Confidence 984
No 337
>PRK09354 recA recombinase A; Provisional
Probab=96.98 E-value=0.0025 Score=71.38 Aligned_cols=77 Identities=23% Similarity=0.235 Sum_probs=48.2
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHh---cCCcEEEeechhhHHH-H---hh------------cchHHHHHHHHHHHh
Q 003476 362 ARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASEFVEL-Y---VG------------MGASRVRDLFARAKK 422 (816)
Q Consensus 362 ~~~pkGVLL~GPPGTGKT~LAkALA~e---lgvpfi~is~s~~~~~-~---vG------------~~~~~vr~lF~~A~~ 422 (816)
....+-++++||||||||+|+-.++.+ .|-.+++++...-.+. + .| ..+..+..+-...+.
T Consensus 57 ip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s 136 (349)
T PRK09354 57 LPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRS 136 (349)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhc
Confidence 344455889999999999999987654 3667777765542221 0 01 111222222233455
Q ss_pred cCCEEEEEcCccchhh
Q 003476 423 EAPSIIFIDEIDAVAK 438 (816)
Q Consensus 423 ~aP~ILfIDEIDaL~~ 438 (816)
..+.+|+||-+-++.+
T Consensus 137 ~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 137 GAVDLIVVDSVAALVP 152 (349)
T ss_pred CCCCEEEEeChhhhcc
Confidence 6788999999998874
No 338
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.98 E-value=0.003 Score=79.90 Aligned_cols=137 Identities=28% Similarity=0.358 Sum_probs=91.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH---HH----hhc--chHHHH-HHHHHHHhcCCEEEEEcCcc
Q 003476 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE---LY----VGM--GASRVR-DLFARAKKEAPSIIFIDEID 434 (816)
Q Consensus 365 pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~---~~----vG~--~~~~vr-~lF~~A~~~aP~ILfIDEID 434 (816)
.+++||.|.||+|||+|+.|+|++.|-.++.|+.++-.+ .| +++ |+-+.+ .-|-.|.+.. .-|++||+.
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G-~WVlLDEiN 1621 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDG-GWVLLDEIN 1621 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcC-CEEEeehhh
Confidence 456999999999999999999999999999999875332 22 111 221222 2244444433 378899986
Q ss_pred chhhccCCccccccchHHHHHHHHHHh--------hcc-CCCCCCcEEEEEEcCCC------CCCCcccCCCCcccceEE
Q 003476 435 AVAKSRDGRFRIVSNDEREQTLNQLLT--------EMD-GFDSNSAVIVLGATNRS------DVLDPALRRPGRFDRVVM 499 (816)
Q Consensus 435 aL~~~r~~~~~~~~~~e~~~~Ln~LL~--------emD-g~~~~~~ViVIaATN~p------d~LDpALlRpGRFdr~I~ 499 (816)
....+ .-.-+|..|. ++| .|.-..+..|+||-|+. ..|+..++. ||. .|.
T Consensus 1622 LaSQS------------VlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-vV~ 1686 (4600)
T COG5271 1622 LASQS------------VLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-VVK 1686 (4600)
T ss_pred hhHHH------------HHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-eEE
Confidence 53211 1123344443 233 24456778999998875 368888887 896 788
Q ss_pred ecCCCHHHHHHHHHHHHh
Q 003476 500 VETPDKIGREAILKVHVS 517 (816)
Q Consensus 500 v~~Pd~~eR~~ILk~~l~ 517 (816)
++....++...|......
T Consensus 1687 ~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1687 MDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred ecccccchHHHHHHhhCC
Confidence 888888887777776553
No 339
>PRK10867 signal recognition particle protein; Provisional
Probab=96.96 E-value=0.0078 Score=69.36 Aligned_cols=74 Identities=23% Similarity=0.388 Sum_probs=46.1
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc----CCcEEEeechhhHHH----------------Hh---h-cchHHHHHHH
Q 003476 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVEL----------------YV---G-MGASRVRDLF 417 (816)
Q Consensus 362 ~~~pkGVLL~GPPGTGKT~LAkALA~el----gvpfi~is~s~~~~~----------------~v---G-~~~~~vr~lF 417 (816)
..+|.-++++||+|+|||+++..+|..+ |..+..+++..+... |. + ......++..
T Consensus 97 ~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~ 176 (433)
T PRK10867 97 AKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAAL 176 (433)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHH
Confidence 3457889999999999999777776643 666666666533210 10 0 1122334555
Q ss_pred HHHHhcCCEEEEEcCccc
Q 003476 418 ARAKKEAPSIIFIDEIDA 435 (816)
Q Consensus 418 ~~A~~~aP~ILfIDEIDa 435 (816)
+.++.....+|+||=.-.
T Consensus 177 ~~a~~~~~DvVIIDTaGr 194 (433)
T PRK10867 177 EEAKENGYDVVIVDTAGR 194 (433)
T ss_pred HHHHhcCCCEEEEeCCCC
Confidence 566666667899887544
No 340
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.93 E-value=0.0021 Score=67.59 Aligned_cols=70 Identities=21% Similarity=0.349 Sum_probs=45.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc--------CCcEEEeech-hhHHHHhhc-------------chHHHHHHHHHHHhc
Q 003476 366 RGVLLVGLPGTGKTLLAKAVAGEA--------EVPFISCSAS-EFVELYVGM-------------GASRVRDLFARAKKE 423 (816)
Q Consensus 366 kGVLL~GPPGTGKT~LAkALA~el--------gvpfi~is~s-~~~~~~vG~-------------~~~~vr~lF~~A~~~ 423 (816)
.+.||.||||||||++.|-+|.-+ ...+..++-+ +......|. ..-+-..++...+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 468999999999999999998854 2333444422 222211111 112223456667889
Q ss_pred CCEEEEEcCccc
Q 003476 424 APSIIFIDEIDA 435 (816)
Q Consensus 424 aP~ILfIDEIDa 435 (816)
+|.|+++|||..
T Consensus 218 ~PEViIvDEIGt 229 (308)
T COG3854 218 SPEVIIVDEIGT 229 (308)
T ss_pred CCcEEEEecccc
Confidence 999999999854
No 341
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.93 E-value=0.00087 Score=67.30 Aligned_cols=38 Identities=26% Similarity=0.491 Sum_probs=32.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 003476 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (816)
Q Consensus 366 kGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~ 403 (816)
+-++|.||||+|||++|++++.+++.+++.++...+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~ 40 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIE 40 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHH
Confidence 46899999999999999999999998888777665544
No 342
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.92 E-value=0.0078 Score=62.73 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=29.6
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeech
Q 003476 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (816)
Q Consensus 361 g~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s 399 (816)
|..+..-+++.|+||+|||.++..++.+. |-++++++..
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 44455668999999999999999887543 6677776654
No 343
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.92 E-value=0.0019 Score=78.42 Aligned_cols=69 Identities=26% Similarity=0.371 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCC
Q 003476 411 SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRR 490 (816)
Q Consensus 411 ~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlR 490 (816)
.+-|-++..|-...|.||++||.-+ ..+.+.++.+.+-|.++. .+..+|..|+|+..+ +
T Consensus 614 QrQrlalARaLl~~P~ILlLDEaTS-----------aLD~~sE~~I~~~L~~~~-----~~~T~I~IaHRl~ti-----~ 672 (709)
T COG2274 614 QRQRLALARALLSKPKILLLDEATS-----------ALDPETEAIILQNLLQIL-----QGRTVIIIAHRLSTI-----R 672 (709)
T ss_pred HHHHHHHHHHhccCCCEEEEeCccc-----------ccCHhHHHHHHHHHHHHh-----cCCeEEEEEccchHh-----h
Confidence 4555566667778899999999633 356667777777777775 234566667775433 3
Q ss_pred CCcccceEEecC
Q 003476 491 PGRFDRVVMVET 502 (816)
Q Consensus 491 pGRFdr~I~v~~ 502 (816)
+.|+.+.++-
T Consensus 673 --~adrIiVl~~ 682 (709)
T COG2274 673 --SADRIIVLDQ 682 (709)
T ss_pred --hccEEEEccC
Confidence 5677776654
No 344
>PRK04296 thymidine kinase; Provisional
Probab=96.92 E-value=0.0026 Score=65.16 Aligned_cols=70 Identities=17% Similarity=0.144 Sum_probs=41.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeech----hhHH---HHhhcc-----hHHHHHHHHHHH--hcCCEEEE
Q 003476 367 GVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS----EFVE---LYVGMG-----ASRVRDLFARAK--KEAPSIIF 429 (816)
Q Consensus 367 GVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s----~~~~---~~vG~~-----~~~vr~lF~~A~--~~aP~ILf 429 (816)
-.+++||||+|||+++..++.++ +..++.+..+ .... ...|.. .....+++..++ ...+.+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 47899999999999998887765 5555555321 1100 011110 112344444443 34567999
Q ss_pred EcCccch
Q 003476 430 IDEIDAV 436 (816)
Q Consensus 430 IDEIDaL 436 (816)
|||++.+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999654
No 345
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.90 E-value=0.00084 Score=67.32 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=28.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 003476 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (816)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~ 404 (816)
|+++||||+|||++|+.||...+++. ++.++++..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~--is~~d~lr~ 36 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH--LSAGDLLRA 36 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECChHHHH
Confidence 78999999999999999999998655 455555543
No 346
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.88 E-value=0.0034 Score=65.81 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=30.4
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc----CCcEEEeec
Q 003476 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSA 398 (816)
Q Consensus 361 g~~~pkGVLL~GPPGTGKT~LAkALA~el----gvpfi~is~ 398 (816)
|..+..-++|.|+||+|||+++..++..+ +.+++.++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 56666679999999999999999886643 778777764
No 347
>PRK14532 adenylate kinase; Provisional
Probab=96.88 E-value=0.00091 Score=67.64 Aligned_cols=36 Identities=25% Similarity=0.415 Sum_probs=29.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 003476 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (816)
Q Consensus 367 GVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~ 404 (816)
.++|.||||+|||++|+.||...|++++ +..+++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHHH
Confidence 4899999999999999999999987665 45555544
No 348
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.87 E-value=0.0095 Score=62.13 Aligned_cols=38 Identities=32% Similarity=0.359 Sum_probs=28.5
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHh---cCCcEEEeec
Q 003476 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSA 398 (816)
Q Consensus 361 g~~~pkGVLL~GPPGTGKT~LAkALA~e---lgvpfi~is~ 398 (816)
|......++++||||+|||+|+..++.+ .+-+.+.++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 4556667999999999999999987643 2556666654
No 349
>PTZ00202 tuzin; Provisional
Probab=96.86 E-value=0.068 Score=61.56 Aligned_cols=63 Identities=16% Similarity=0.322 Sum_probs=49.8
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechh
Q 003476 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (816)
Q Consensus 329 vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~ 400 (816)
-...+.+|.+....+|.+++... ....|+-+.|+||+|||||+|++.++..++.+.+.++...
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~---------d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg 321 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRL---------DTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRG 321 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhcc---------CCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCC
Confidence 34668999999888888877532 2234567899999999999999999999998877766543
No 350
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.86 E-value=0.0059 Score=63.78 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH
Q 003476 365 PRGVLLVGLPGTGKTLLAKAVAG 387 (816)
Q Consensus 365 pkGVLL~GPPGTGKT~LAkALA~ 387 (816)
++.++|+||.|+|||+|.|.++.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 46799999999999999999983
No 351
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.86 E-value=0.0051 Score=62.12 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=22.5
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHh
Q 003476 363 RPPRGVLLVGLPGTGKTLLAKAVAGE 388 (816)
Q Consensus 363 ~~pkGVLL~GPPGTGKT~LAkALA~e 388 (816)
++.--++|+||+|||||+|.|++|.-
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhc
Confidence 44455999999999999999999984
No 352
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.86 E-value=0.0042 Score=65.95 Aligned_cols=36 Identities=31% Similarity=0.552 Sum_probs=29.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH
Q 003476 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (816)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~ 403 (816)
|+|+|+||+|||++|++++..+ +.+++.++...+.+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~ 40 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRE 40 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHH
Confidence 7899999999999999999876 56777777654543
No 353
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.85 E-value=0.0042 Score=62.47 Aligned_cols=107 Identities=20% Similarity=0.240 Sum_probs=61.2
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCC--cEEEeechhhH------HH---Hhh------------------cchHH
Q 003476 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASEFV------EL---YVG------------------MGASR 412 (816)
Q Consensus 362 ~~~pkGVLL~GPPGTGKT~LAkALA~elgv--pfi~is~s~~~------~~---~vG------------------~~~~~ 412 (816)
..+...+.|.||+|+|||+|++.+++.... --+.+++.+.. .. |+. .+..+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~ 104 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGER 104 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHH
Confidence 344556899999999999999999996521 11222221110 00 000 01233
Q ss_pred HHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCC
Q 003476 413 VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL 484 (816)
Q Consensus 413 vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~L 484 (816)
.+-.+..|-...|.++++||--. +.+....+.+.+++.++. + +..+|.+|+.++.+
T Consensus 105 qrv~laral~~~p~~lllDEP~~-----------~LD~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~ 160 (178)
T cd03247 105 QRLALARILLQDAPIVLLDEPTV-----------GLDPITERQLLSLIFEVL----K-DKTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHHHHhcCCCEEEEECCcc-----------cCCHHHHHHHHHHHHHHc----C-CCEEEEEecCHHHH
Confidence 44456666678899999999643 233444556666666653 1 23455566655433
No 354
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.85 E-value=0.012 Score=72.98 Aligned_cols=155 Identities=20% Similarity=0.287 Sum_probs=83.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeech--h-----hHH----HH----hhc---c------------hHHHHH
Q 003476 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS--E-----FVE----LY----VGM---G------------ASRVRD 415 (816)
Q Consensus 366 kGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s--~-----~~~----~~----vG~---~------------~~~vr~ 415 (816)
+-++++||+|.|||+++...+...+ ++.-++.. + |.. .. .+. . ...+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 4589999999999999999987766 65444432 1 111 00 000 0 011222
Q ss_pred HHHHHHh-cCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCC-cccCCCCc
Q 003476 416 LFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD-PALRRPGR 493 (816)
Q Consensus 416 lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LD-pALlRpGR 493 (816)
++..... ..|.+|+|||+|.+. +......+..|+..+. ....+|| ++...-.+. ..+...
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~-----------~~~~~~~l~~l~~~~~----~~~~lv~-~sR~~~~~~~~~l~~~-- 173 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLIT-----------NPEIHEAMRFFLRHQP----ENLTLVV-LSRNLPPLGIANLRVR-- 173 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCC-----------ChHHHHHHHHHHHhCC----CCeEEEE-EeCCCCCCchHhHHhc--
Confidence 3333322 578999999999873 1223345555565432 2333444 443311121 111111
Q ss_pred ccceEEec----CCCHHHHHHHHHHHHhcCCCCCccccCHHHHHhhCCCCCHHHHH
Q 003476 494 FDRVVMVE----TPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLA 545 (816)
Q Consensus 494 Fdr~I~v~----~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~ 545 (816)
+..+.+. ..+.+|-.+++...+. .++.. .+...+...|.|+ +.-+.
T Consensus 174 -~~~~~l~~~~l~f~~~e~~~ll~~~~~---~~~~~-~~~~~l~~~t~Gw-p~~l~ 223 (903)
T PRK04841 174 -DQLLEIGSQQLAFDHQEAQQFFDQRLS---SPIEA-AESSRLCDDVEGW-ATALQ 223 (903)
T ss_pred -CcceecCHHhCCCCHHHHHHHHHhccC---CCCCH-HHHHHHHHHhCCh-HHHHH
Confidence 2244555 5688888888776543 23332 3467788888885 44443
No 355
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.84 E-value=0.0084 Score=68.14 Aligned_cols=72 Identities=17% Similarity=0.139 Sum_probs=45.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhH----H---HH---------hhcchHHHHHHHHHHHh-c
Q 003476 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV----E---LY---------VGMGASRVRDLFARAKK-E 423 (816)
Q Consensus 364 ~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~----~---~~---------vG~~~~~vr~lF~~A~~-~ 423 (816)
.|+-++|+||+|+|||+++..||..+ +..+..+++..+. + .| +......+.+.+..++. .
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 46779999999999999999999765 3444444443221 1 11 12344556666666654 2
Q ss_pred CCEEEEEcCccc
Q 003476 424 APSIIFIDEIDA 435 (816)
Q Consensus 424 aP~ILfIDEIDa 435 (816)
.-.+||||-.-.
T Consensus 320 ~~DvVLIDTaGR 331 (436)
T PRK11889 320 RVDYILIDTAGK 331 (436)
T ss_pred CCCEEEEeCccc
Confidence 346999987643
No 356
>PLN02200 adenylate kinase family protein
Probab=96.84 E-value=0.0013 Score=69.77 Aligned_cols=42 Identities=19% Similarity=0.310 Sum_probs=33.8
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 003476 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (816)
Q Consensus 361 g~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~ 404 (816)
+...|.-+++.||||+|||++|+.+|..+|++ .++.++++..
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR~ 80 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLRR 80 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHHH
Confidence 34566779999999999999999999999876 4666666543
No 357
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.84 E-value=0.00097 Score=63.85 Aligned_cols=30 Identities=27% Similarity=0.564 Sum_probs=28.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEee
Q 003476 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (816)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgvpfi~is 397 (816)
+.++|+||+|||++|+.||..++.|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998776
No 358
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.83 E-value=0.0052 Score=60.02 Aligned_cols=101 Identities=26% Similarity=0.374 Sum_probs=56.9
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc--EEEeech---hhHHHHhhcchHHHHHHHHHHHhcCCEEEEEcCccch
Q 003476 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP--FISCSAS---EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAV 436 (816)
Q Consensus 362 ~~~pkGVLL~GPPGTGKT~LAkALA~elgvp--fi~is~s---~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL 436 (816)
..+...+.|.||+|+|||+|++++++..... -+.++.. .++..+ . +..+-+-.+..|....|.++++||-..
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~l-S-~G~~~rv~laral~~~p~illlDEP~~- 99 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQL-S-GGEKMRLALAKLLLENPNLLLLDEPTN- 99 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccC-C-HHHHHHHHHHHHHhcCCCEEEEeCCcc-
Confidence 3445568999999999999999999975210 0111110 000001 1 122334445666677899999999643
Q ss_pred hhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCC
Q 003476 437 AKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (816)
Q Consensus 437 ~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd 482 (816)
+.+......+..++.++. ..+|.+|+.++
T Consensus 100 ----------~LD~~~~~~l~~~l~~~~-------~til~~th~~~ 128 (144)
T cd03221 100 ----------HLDLESIEALEEALKEYP-------GTVILVSHDRY 128 (144)
T ss_pred ----------CCCHHHHHHHHHHHHHcC-------CEEEEEECCHH
Confidence 223333444555555541 24555666554
No 359
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.83 E-value=0.0053 Score=62.45 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 003476 368 VLLVGLPGTGKTLLAKAVA 386 (816)
Q Consensus 368 VLL~GPPGTGKT~LAkALA 386 (816)
++|+||.|.|||++.|.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999998
No 360
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.82 E-value=0.003 Score=63.21 Aligned_cols=107 Identities=24% Similarity=0.330 Sum_probs=60.5
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc--EEEeechhhH--------H----------HHh-------hcchHHHH
Q 003476 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP--FISCSASEFV--------E----------LYV-------GMGASRVR 414 (816)
Q Consensus 362 ~~~pkGVLL~GPPGTGKT~LAkALA~elgvp--fi~is~s~~~--------~----------~~v-------G~~~~~vr 414 (816)
..+..-+.|.||+|+|||+|.+.+++..... -+.+++.... . .+. -.+..+-+
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~r 104 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQR 104 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHH
Confidence 3455569999999999999999999975210 0112211110 0 000 00112233
Q ss_pred HHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCC
Q 003476 415 DLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL 484 (816)
Q Consensus 415 ~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~L 484 (816)
-.+..|-...|.++++||--+ +.+......+..++.++. . +..+|.+|+.++.+
T Consensus 105 l~la~al~~~p~llllDEP~~-----------gLD~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~ 158 (171)
T cd03228 105 IAIARALLRDPPILILDEATS-----------ALDPETEALILEALRALA---K--GKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHHhcCCCEEEEECCCc-----------CCCHHHHHHHHHHHHHhc---C--CCEEEEEecCHHHH
Confidence 445566667899999999533 233344455566666553 1 24566677766544
No 361
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.82 E-value=0.0059 Score=61.71 Aligned_cols=90 Identities=12% Similarity=0.197 Sum_probs=54.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHHhhcchH--------------------HHHHHHHHHHhcCCE
Q 003476 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGAS--------------------RVRDLFARAKKEAPS 426 (816)
Q Consensus 367 GVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~~vG~~~~--------------------~vr~lF~~A~~~aP~ 426 (816)
-+|+.||||+|||++|..++.+.+.+++++......+ .+... .+..++... ...+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~---~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~ 78 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFD---DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGR 78 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCCh---HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCC
Confidence 4899999999999999999999888877776543211 11111 223333221 12356
Q ss_pred EEEEcCccchhhccCCccccccc-hHHHHHHHHHHhhcc
Q 003476 427 IIFIDEIDAVAKSRDGRFRIVSN-DEREQTLNQLLTEMD 464 (816)
Q Consensus 427 ILfIDEIDaL~~~r~~~~~~~~~-~e~~~~Ln~LL~emD 464 (816)
+|+||-+..+....-. ..+ +.....+..++..+.
T Consensus 79 ~VlID~Lt~~~~n~l~----~~~~~~~~~~l~~li~~L~ 113 (170)
T PRK05800 79 CVLVDCLTTWVTNLLF----EEGEEAIAAEIDALLAALQ 113 (170)
T ss_pred EEEehhHHHHHHHHhc----ccchHHHHHHHHHHHHHHH
Confidence 8999998887643211 011 223445666766665
No 362
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.82 E-value=0.004 Score=68.62 Aligned_cols=35 Identities=37% Similarity=0.657 Sum_probs=31.5
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEe
Q 003476 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (816)
Q Consensus 362 ~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~i 396 (816)
..++..|+|+|+||||||++++.+|..+|++|+.+
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~ 164 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVEL 164 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeH
Confidence 45677899999999999999999999999999954
No 363
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.81 E-value=0.0071 Score=61.47 Aligned_cols=118 Identities=17% Similarity=0.150 Sum_probs=65.6
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCC-------------cEEEeechhhHHHHh------h------cchHHHHHHH
Q 003476 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------------PFISCSASEFVELYV------G------MGASRVRDLF 417 (816)
Q Consensus 363 ~~pkGVLL~GPPGTGKT~LAkALA~elgv-------------pfi~is~s~~~~~~v------G------~~~~~vr~lF 417 (816)
.+..-+.|.||+|+|||+|.++++...|- ++..+.-.++.+.+- . .+..+.+-.+
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~l 98 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKL 98 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHHH
Confidence 34455889999999999999999743321 122221111222110 0 0123445556
Q ss_pred HHHHhcC--CEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccc
Q 003476 418 ARAKKEA--PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFD 495 (816)
Q Consensus 418 ~~A~~~a--P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFd 495 (816)
..|.... |.++++||--. +.+....+.+.+++..+. . .+..||.+|+.++.+ + ..|
T Consensus 99 aral~~~~~p~llLlDEPt~-----------~LD~~~~~~l~~~l~~~~---~-~g~tvIivSH~~~~~-----~--~~d 156 (176)
T cd03238 99 ASELFSEPPGTLFILDEPST-----------GLHQQDINQLLEVIKGLI---D-LGNTVILIEHNLDVL-----S--SAD 156 (176)
T ss_pred HHHHhhCCCCCEEEEeCCcc-----------cCCHHHHHHHHHHHHHHH---h-CCCEEEEEeCCHHHH-----H--hCC
Confidence 6666778 89999999643 233444445555555542 1 234566677665432 2 346
Q ss_pred ceEEecC
Q 003476 496 RVVMVET 502 (816)
Q Consensus 496 r~I~v~~ 502 (816)
+.+.+..
T Consensus 157 ~i~~l~~ 163 (176)
T cd03238 157 WIIDFGP 163 (176)
T ss_pred EEEEECC
Confidence 6666643
No 364
>PRK13695 putative NTPase; Provisional
Probab=96.81 E-value=0.0081 Score=60.17 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 003476 368 VLLVGLPGTGKTLLAKAVAGEA 389 (816)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~el 389 (816)
++|+|+||+|||+|++.+++++
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999988764
No 365
>PRK14531 adenylate kinase; Provisional
Probab=96.79 E-value=0.0013 Score=66.68 Aligned_cols=36 Identities=22% Similarity=0.476 Sum_probs=29.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 003476 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (816)
Q Consensus 366 kGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~ 403 (816)
+.++++||||+|||++++.+|...|+++++ +++++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is--~gd~lr 38 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS--TGDLLR 38 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe--cccHHH
Confidence 359999999999999999999999988765 444443
No 366
>PRK13764 ATPase; Provisional
Probab=96.79 E-value=0.0018 Score=77.21 Aligned_cols=70 Identities=20% Similarity=0.336 Sum_probs=42.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcC---CcEEEee-chhh-----HHHHhhcchHHHHHHHHHHHhcCCEEEEEcCccc
Q 003476 365 PRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCS-ASEF-----VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDA 435 (816)
Q Consensus 365 pkGVLL~GPPGTGKT~LAkALA~elg---vpfi~is-~s~~-----~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDa 435 (816)
..++|++||||+|||+++++++..+. ..+..+. ..++ +..|... ..........+....|.+|++||+-.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~-~~~~~~~~~~lLR~rPD~IivGEiRd 335 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKL-EGSMEETADILLLVRPDYTIYDEMRK 335 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeec-cccHHHHHHHHHhhCCCEEEECCCCC
Confidence 46899999999999999999998764 2232321 1111 1111100 01122333344567899999999753
No 367
>PRK06217 hypothetical protein; Validated
Probab=96.77 E-value=0.0012 Score=66.71 Aligned_cols=31 Identities=26% Similarity=0.544 Sum_probs=28.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEee
Q 003476 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (816)
Q Consensus 367 GVLL~GPPGTGKT~LAkALA~elgvpfi~is 397 (816)
.|+|.|+||+|||++|++|+..+++|++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999987654
No 368
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.77 E-value=0.0034 Score=61.71 Aligned_cols=107 Identities=26% Similarity=0.355 Sum_probs=60.0
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE--EEeechhhH-------HHHhh-----cchHHHHHHHHHHHhcCCEEE
Q 003476 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF--ISCSASEFV-------ELYVG-----MGASRVRDLFARAKKEAPSII 428 (816)
Q Consensus 363 ~~pkGVLL~GPPGTGKT~LAkALA~elgvpf--i~is~s~~~-------~~~vG-----~~~~~vr~lF~~A~~~aP~IL 428 (816)
.+..-+.|.||+|+|||+|++++++.....- +.+++.... ...++ .+..+.+-.+..+-...|.++
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLL 102 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEE
Confidence 3445689999999999999999999764221 222222110 00011 112333444556666678899
Q ss_pred EEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCC
Q 003476 429 FIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL 484 (816)
Q Consensus 429 fIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~L 484 (816)
++||...= .+......+..++.++.. . +..+|.+|+..+.+
T Consensus 103 ilDEp~~~-----------lD~~~~~~l~~~l~~~~~---~-~~tii~~sh~~~~~ 143 (157)
T cd00267 103 LLDEPTSG-----------LDPASRERLLELLRELAE---E-GRTVIIVTHDPELA 143 (157)
T ss_pred EEeCCCcC-----------CCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHHH
Confidence 99997542 233334445555555431 1 23455666665433
No 369
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.77 E-value=0.01 Score=68.04 Aligned_cols=69 Identities=20% Similarity=0.357 Sum_probs=40.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc----CCcEEEeechhhHH-------HH---hhc---chHHHHHHHHHHHhcCCE
Q 003476 364 PPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVE-------LY---VGM---GASRVRDLFARAKKEAPS 426 (816)
Q Consensus 364 ~pkGVLL~GPPGTGKT~LAkALA~el----gvpfi~is~s~~~~-------~~---vG~---~~~~vr~lF~~A~~~aP~ 426 (816)
.+.-++|+||+|+|||+++..+|... |..+..+++..+.. .| .+. ....+.++.+.+......
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D 301 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSE 301 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCC
Confidence 35568899999999999999999754 43444444433221 11 111 112234444444444556
Q ss_pred EEEEcC
Q 003476 427 IIFIDE 432 (816)
Q Consensus 427 ILfIDE 432 (816)
+|+||=
T Consensus 302 ~VLIDT 307 (432)
T PRK12724 302 LILIDT 307 (432)
T ss_pred EEEEeC
Confidence 888875
No 370
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.77 E-value=0.0016 Score=72.65 Aligned_cols=71 Identities=25% Similarity=0.385 Sum_probs=48.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcCC--cEEEee-chhhHH--------HH-----hhcchHHHHHHHHHHHhcCCEE
Q 003476 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCS-ASEFVE--------LY-----VGMGASRVRDLFARAKKEAPSI 427 (816)
Q Consensus 364 ~pkGVLL~GPPGTGKT~LAkALA~elgv--pfi~is-~s~~~~--------~~-----vG~~~~~vr~lF~~A~~~aP~I 427 (816)
..+++|++||+|+|||+++++++....- .++.+. ..++.- .+ .+...-.+.++++.+....|++
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~ 238 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDR 238 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCe
Confidence 4567999999999999999999987642 233221 111110 00 1122234678889999999999
Q ss_pred EEEcCcc
Q 003476 428 IFIDEID 434 (816)
Q Consensus 428 LfIDEID 434 (816)
|++.|+.
T Consensus 239 IivGEiR 245 (332)
T PRK13900 239 IIVGELR 245 (332)
T ss_pred EEEEecC
Confidence 9999984
No 371
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.77 E-value=0.018 Score=64.57 Aligned_cols=160 Identities=17% Similarity=0.230 Sum_probs=89.3
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH------H
Q 003476 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL------Y 405 (816)
Q Consensus 332 ~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~------~ 405 (816)
..|.+.+.+.+.|..++-.. ....|..+.|+|-.|||||.+.+.+-+.++.|.+.++|-+.... .
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~---------~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNN---------SCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred cCccchHHHHHHHHHHhCCC---------CcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHH
Confidence 34566666666665543211 12568889999999999999999999999999999988665431 0
Q ss_pred ---h------h----cchHHHH---HHHHH--HHhc--CCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccC
Q 003476 406 ---V------G----MGASRVR---DLFAR--AKKE--APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG 465 (816)
Q Consensus 406 ---v------G----~~~~~vr---~lF~~--A~~~--aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg 465 (816)
+ | .....+. .+|.+ +... .--.|++|.+|.+-.. + ...++.++..-.-
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~-~-----------a~ll~~l~~L~el 144 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDM-D-----------AILLQCLFRLYEL 144 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhcc-c-----------hHHHHHHHHHHHH
Confidence 1 0 0111222 23333 2222 2347889999998521 1 1233333332221
Q ss_pred CCCCCcEEEEEEcCCCCCCCcccCCCCccc-ceEEecCCCHHHHHHHHHHH
Q 003476 466 FDSNSAVIVLGATNRSDVLDPALRRPGRFD-RVVMVETPDKIGREAILKVH 515 (816)
Q Consensus 466 ~~~~~~ViVIaATN~pd~LDpALlRpGRFd-r~I~v~~Pd~~eR~~ILk~~ 515 (816)
.. ...+.+|...-.+. +.-+.+-|-++ -.++|+.|+.++...|+..-
T Consensus 145 ~~-~~~i~iils~~~~e--~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 145 LN-EPTIVIILSAPSCE--KQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred hC-CCceEEEEeccccH--HHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 11 22333332222111 11122223333 35688899999999888654
No 372
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.77 E-value=0.0044 Score=60.90 Aligned_cols=36 Identities=25% Similarity=0.458 Sum_probs=30.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH
Q 003476 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (816)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~ 403 (816)
++|+|+||+|||++|+.++..+ +.+.+.++...+..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~ 40 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 6899999999999999999988 77777777665543
No 373
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.76 E-value=0.0013 Score=63.99 Aligned_cols=28 Identities=36% Similarity=0.763 Sum_probs=25.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEE
Q 003476 368 VLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (816)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgvpfi~ 395 (816)
++|+|+||+|||++|+.++...+.+++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998887664
No 374
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.76 E-value=0.0089 Score=64.22 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=28.7
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHh---cCCcEEEeech
Q 003476 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSAS 399 (816)
Q Consensus 361 g~~~pkGVLL~GPPGTGKT~LAkALA~e---lgvpfi~is~s 399 (816)
|.....-++++||||||||+|+-.+|.+ .|-++++++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 4445566999999999999999988664 25566666543
No 375
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.76 E-value=0.0058 Score=60.99 Aligned_cols=103 Identities=29% Similarity=0.424 Sum_probs=58.6
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCC-----------cEEEeech------hhHHHH----h--hcchHHHHHHHH
Q 003476 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-----------PFISCSAS------EFVELY----V--GMGASRVRDLFA 418 (816)
Q Consensus 362 ~~~pkGVLL~GPPGTGKT~LAkALA~elgv-----------pfi~is~s------~~~~~~----v--G~~~~~vr~lF~ 418 (816)
..+..-+.|.||+|+|||+|++.+++.... .+.++.-. ...+.. . =.+..+.|-.+.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~la 103 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFA 103 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHH
Confidence 344556899999999999999999997521 01111100 011110 0 012234455566
Q ss_pred HHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCC
Q 003476 419 RAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (816)
Q Consensus 419 ~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd 482 (816)
.|-...|.++++||-.+ +.+....+.+.+++.++ +..+|.+|++++
T Consensus 104 ral~~~p~~lllDEPt~-----------~LD~~~~~~l~~~l~~~-------~~tiiivsh~~~ 149 (166)
T cd03223 104 RLLLHKPKFVFLDEATS-----------ALDEESEDRLYQLLKEL-------GITVISVGHRPS 149 (166)
T ss_pred HHHHcCCCEEEEECCcc-----------ccCHHHHHHHHHHHHHh-------CCEEEEEeCChh
Confidence 66678899999999643 23334445555566554 134555666653
No 376
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.75 E-value=0.0013 Score=66.37 Aligned_cols=34 Identities=35% Similarity=0.651 Sum_probs=28.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 003476 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (816)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~ 403 (816)
|+|+||||+|||++|+.||...|++++. .++++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~--~~~l~~ 35 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS--TGDLLR 35 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE--CcHHHH
Confidence 7999999999999999999999877655 445544
No 377
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.75 E-value=0.0012 Score=65.12 Aligned_cols=32 Identities=38% Similarity=0.662 Sum_probs=29.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEEee
Q 003476 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (816)
Q Consensus 366 kGVLL~GPPGTGKT~LAkALA~elgvpfi~is 397 (816)
.++|++|-||||||+|+..||...+.+++.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 46999999999999999999999999988764
No 378
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.73 E-value=0.017 Score=59.86 Aligned_cols=30 Identities=23% Similarity=0.450 Sum_probs=26.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEE
Q 003476 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFI 394 (816)
Q Consensus 365 pkGVLL~GPPGTGKT~LAkALA~elgvpfi 394 (816)
+.-+++.|+||+|||++|+.+|.+++.+++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~~ 32 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDIV 32 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 456899999999999999999999988663
No 379
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.73 E-value=0.0058 Score=61.75 Aligned_cols=93 Identities=15% Similarity=0.153 Sum_probs=54.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH-----HH---H---------hhcchHHHHHHHHHHHhcCCEEEEE
Q 003476 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV-----EL---Y---------VGMGASRVRDLFARAKKEAPSIIFI 430 (816)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~-----~~---~---------vG~~~~~vr~lF~~A~~~aP~ILfI 430 (816)
+|++|+||+|||++|..++.+.+-+.+++....-. .. + ..+....+.+.+.... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 68999999999999999998877777777544221 11 0 0112223334332221 4669999
Q ss_pred cCccchhhccCCcccccc--chHHHHHHHHHHhhcc
Q 003476 431 DEIDAVAKSRDGRFRIVS--NDEREQTLNQLLTEMD 464 (816)
Q Consensus 431 DEIDaL~~~r~~~~~~~~--~~e~~~~Ln~LL~emD 464 (816)
|-+..+....-.. ... .+...+.+..|+..+.
T Consensus 80 Dclt~~~~n~l~~--~~~~~~~~~~~~i~~l~~~l~ 113 (169)
T cd00544 80 DCLTLWVTNLLFA--DLEEWEAAIADEIDALLAAVR 113 (169)
T ss_pred EcHhHHHHHhCCC--ccccchhHHHHHHHHHHHHHH
Confidence 9988876543210 000 0222345566777665
No 380
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.72 E-value=0.0021 Score=70.77 Aligned_cols=72 Identities=21% Similarity=0.415 Sum_probs=48.7
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC--cEEEeechhhHHHH---------------hhcchHHHHHHHHHHHhc
Q 003476 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASEFVELY---------------VGMGASRVRDLFARAKKE 423 (816)
Q Consensus 361 g~~~pkGVLL~GPPGTGKT~LAkALA~elgv--pfi~is~s~~~~~~---------------vG~~~~~vr~lF~~A~~~ 423 (816)
-.+...+++++||+|+|||+|++++++...- ..+.+. +..+.. .+...-.+.+++..+...
T Consensus 140 ~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~ 217 (308)
T TIGR02788 140 AIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRM 217 (308)
T ss_pred HhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcC
Confidence 3455678999999999999999999987632 222221 111100 011123466788888889
Q ss_pred CCEEEEEcCcc
Q 003476 424 APSIIFIDEID 434 (816)
Q Consensus 424 aP~ILfIDEID 434 (816)
.|.+|++||+-
T Consensus 218 ~pd~ii~gE~r 228 (308)
T TIGR02788 218 RPDRIILGELR 228 (308)
T ss_pred CCCeEEEeccC
Confidence 99999999985
No 381
>PRK06696 uridine kinase; Validated
Probab=96.72 E-value=0.0021 Score=67.22 Aligned_cols=40 Identities=33% Similarity=0.483 Sum_probs=34.2
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhH
Q 003476 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 402 (816)
Q Consensus 363 ~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~ 402 (816)
..|.-|.+.|++|+|||+||+.|+..+ |++++.++..+|.
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 346678899999999999999999988 7888888877765
No 382
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.72 E-value=0.0091 Score=69.81 Aligned_cols=78 Identities=26% Similarity=0.253 Sum_probs=53.3
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHH------hhc----------------------c
Q 003476 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY------VGM----------------------G 409 (816)
Q Consensus 361 g~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~~~------vG~----------------------~ 409 (816)
|..+...+|+.||||+|||+|+-.++.+. |-+.++++..+-.+.+ .|. .
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 34455559999999999999999987754 6677777655432211 110 0
Q ss_pred hHHHHHHHHHHHhcCCEEEEEcCccchhh
Q 003476 410 ASRVRDLFARAKKEAPSIIFIDEIDAVAK 438 (816)
Q Consensus 410 ~~~vr~lF~~A~~~aP~ILfIDEIDaL~~ 438 (816)
...+..+.+......|.+|+||-+..+..
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 33455566666777899999999988753
No 383
>PHA02774 E1; Provisional
Probab=96.71 E-value=0.008 Score=70.91 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=25.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEE
Q 003476 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (816)
Q Consensus 366 kGVLL~GPPGTGKT~LAkALA~elgvpfi~ 395 (816)
++++|+||||||||+||-+|++.++-..+.
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~ 464 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVIS 464 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 479999999999999999999998644443
No 384
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=96.71 E-value=0.0078 Score=70.09 Aligned_cols=150 Identities=24% Similarity=0.297 Sum_probs=80.3
Q ss_pred cccCChHHHHHHHHHHHH-----hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEe-echhhH----
Q 003476 333 DVAGVDEAKEELEEIVEF-----LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC-SASEFV---- 402 (816)
Q Consensus 333 DV~G~ee~K~~L~eiV~~-----Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~i-s~s~~~---- 402 (816)
.|.|.+.+|+.+.-++-- |.|... .+..-+|||+|.|-|-|+-|.|.+.+-+..-+-.. .+|.=+
T Consensus 302 SI~GH~~vKkAillLLlGGvEk~L~NGsh-----lRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTA 376 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGVEKNLENGSH-----LRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTA 376 (818)
T ss_pred ccccHHHHHHHHHHHHhccceeccCCCce-----eccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCcccee
Confidence 578999999877554321 222211 34455799999999999999999987653222111 011000
Q ss_pred --HHHhhcchHHHHH-HHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhcc--CC--CCCCcEEEE
Q 003476 403 --ELYVGMGASRVRD-LFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD--GF--DSNSAVIVL 475 (816)
Q Consensus 403 --~~~vG~~~~~vr~-lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emD--g~--~~~~~ViVI 475 (816)
..-...++.++.. .+-.| ...|++|||+|.+..-.. ..-++ ++.|--.-+. |+ .-+.++-|+
T Consensus 377 AVTtD~eTGERRLEAGAMVLA---DRGVVCIDEFDKMsDiDR----vAIHE----VMEQqtVTIaKAGIHasLNARCSVl 445 (818)
T KOG0479|consen 377 AVTTDQETGERRLEAGAMVLA---DRGVVCIDEFDKMSDIDR----VAIHE----VMEQQTVTIAKAGIHASLNARCSVL 445 (818)
T ss_pred EEeeccccchhhhhcCceEEc---cCceEEehhcccccchhH----HHHHH----HHhcceEEeEeccchhhhccceeee
Confidence 0001122333221 11112 235999999999853210 01111 1111111111 11 235678999
Q ss_pred EEcCCCC-------------CCCcccCCCCcccceEEe
Q 003476 476 GATNRSD-------------VLDPALRRPGRFDRVVMV 500 (816)
Q Consensus 476 aATN~pd-------------~LDpALlRpGRFdr~I~v 500 (816)
||.|... .|+..|++ |||..+.+
T Consensus 446 AAANPvyG~Yd~~k~P~eNIgLpDSLLS--RFDLlFv~ 481 (818)
T KOG0479|consen 446 AAANPVYGQYDQSKTPMENIGLPDSLLS--RFDLLFVV 481 (818)
T ss_pred eecCccccccCCCCChhhccCCcHHHHh--hhcEEEEE
Confidence 9999742 45677888 99966544
No 385
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.70 E-value=0.0018 Score=71.74 Aligned_cols=70 Identities=24% Similarity=0.364 Sum_probs=47.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEee-chhhH---H---HHhhcchHHHHHHHHHHHhcCCEEEEEcC
Q 003476 365 PRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCS-ASEFV---E---LYVGMGASRVRDLFARAKKEAPSIIFIDE 432 (816)
Q Consensus 365 pkGVLL~GPPGTGKT~LAkALA~el-----gvpfi~is-~s~~~---~---~~vG~~~~~vr~lF~~A~~~aP~ILfIDE 432 (816)
.++++++||+|+|||+++++++.+. ...++.+. ..++. . .+.....-.+.++++.+....|+.|++.|
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGE 227 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGE 227 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 4679999999999999999999863 12233221 11111 0 01111223567889999999999999999
Q ss_pred cc
Q 003476 433 ID 434 (816)
Q Consensus 433 ID 434 (816)
+-
T Consensus 228 iR 229 (319)
T PRK13894 228 VR 229 (319)
T ss_pred cC
Confidence 84
No 386
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.70 E-value=0.008 Score=60.24 Aligned_cols=104 Identities=24% Similarity=0.380 Sum_probs=59.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcCC--cEEEeechh--------hHHH--Hh---------------hcchHHHHHH
Q 003476 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASE--------FVEL--YV---------------GMGASRVRDL 416 (816)
Q Consensus 364 ~pkGVLL~GPPGTGKT~LAkALA~elgv--pfi~is~s~--------~~~~--~v---------------G~~~~~vr~l 416 (816)
+..-+.|.||+|+|||+|.+.+++.... --+.+++.+ +... |+ =.+..+.|-.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~ 106 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLG 106 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHHH
Confidence 3445899999999999999999986421 011111111 0000 00 0122334555
Q ss_pred HHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCC
Q 003476 417 FARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (816)
Q Consensus 417 F~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd 482 (816)
+..|....|.++++||--. +.+....+.+.+++..+.. .+..+|.+|+..+
T Consensus 107 la~al~~~p~~lllDEPt~-----------~LD~~~~~~l~~~l~~~~~----~~~tii~~sh~~~ 157 (173)
T cd03246 107 LARALYGNPRILVLDEPNS-----------HLDVEGERALNQAIAALKA----AGATRIVIAHRPE 157 (173)
T ss_pred HHHHHhcCCCEEEEECCcc-----------ccCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHH
Confidence 6667778899999999643 2344445555666665531 2345556666554
No 387
>PRK04328 hypothetical protein; Provisional
Probab=96.69 E-value=0.013 Score=62.52 Aligned_cols=38 Identities=29% Similarity=0.389 Sum_probs=28.7
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHh---cCCcEEEeec
Q 003476 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSA 398 (816)
Q Consensus 361 g~~~pkGVLL~GPPGTGKT~LAkALA~e---lgvpfi~is~ 398 (816)
|..+...+|++||||||||.|+..++.+ .|-+.++++.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 4455666999999999999999877543 3667776665
No 388
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.69 E-value=0.0067 Score=62.40 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 003476 366 RGVLLVGLPGTGKTLLAKAVAG 387 (816)
Q Consensus 366 kGVLL~GPPGTGKT~LAkALA~ 387 (816)
.-++|+||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 4599999999999999999983
No 389
>PRK06547 hypothetical protein; Provisional
Probab=96.68 E-value=0.0018 Score=65.53 Aligned_cols=35 Identities=31% Similarity=0.374 Sum_probs=30.4
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEee
Q 003476 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (816)
Q Consensus 363 ~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is 397 (816)
..+.-|++.|++|+|||++|+.+++.++++++.++
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 45667899999999999999999999998887653
No 390
>PRK14530 adenylate kinase; Provisional
Probab=96.68 E-value=0.0016 Score=67.65 Aligned_cols=35 Identities=29% Similarity=0.502 Sum_probs=29.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 003476 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (816)
Q Consensus 367 GVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~ 403 (816)
.|+|.||||+|||++++.||..++++++.+ .+++.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~--g~~lr 39 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT--GDALR 39 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec--cHHHH
Confidence 589999999999999999999999887654 44443
No 391
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.68 E-value=0.0034 Score=64.83 Aligned_cols=108 Identities=25% Similarity=0.385 Sum_probs=56.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhH-------HHH---hh----------cchHHHHHHHHHHH
Q 003476 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV-------ELY---VG----------MGASRVRDLFARAK 421 (816)
Q Consensus 365 pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~-------~~~---vG----------~~~~~vr~lF~~A~ 421 (816)
|+-++|+||+|+|||+.+-.+|..+ +..+-.+++..+. ..| .+ ......++.++.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 5679999999999999888887754 3333333332221 111 11 11233455666665
Q ss_pred hcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCC
Q 003476 422 KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 485 (816)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LD 485 (816)
...-.+|+||-..... .+.+...-+..++..+ .+..-.+|+.++-..+.++
T Consensus 81 ~~~~D~vlIDT~Gr~~----------~d~~~~~el~~~~~~~---~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSP----------RDEELLEELKKLLEAL---NPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp HTTSSEEEEEE-SSSS----------THHHHHHHHHHHHHHH---SSSEEEEEEEGGGGGHHHH
T ss_pred hcCCCEEEEecCCcch----------hhHHHHHHHHHHhhhc---CCccceEEEecccChHHHH
Confidence 5545689988753221 1222333444555554 2333455555555444443
No 392
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.68 E-value=0.0014 Score=64.70 Aligned_cols=28 Identities=36% Similarity=0.642 Sum_probs=25.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEE
Q 003476 368 VLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (816)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgvpfi~ 395 (816)
++|+||||+|||++|+.+++.++.+++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 4789999999999999999999977754
No 393
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.67 E-value=0.0022 Score=71.18 Aligned_cols=70 Identities=23% Similarity=0.302 Sum_probs=47.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEee-chhhHH------HHhhcchHHHHHHHHHHHhcCCEEEEEcC
Q 003476 365 PRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCS-ASEFVE------LYVGMGASRVRDLFARAKKEAPSIIFIDE 432 (816)
Q Consensus 365 pkGVLL~GPPGTGKT~LAkALA~el-----gvpfi~is-~s~~~~------~~vG~~~~~vr~lF~~A~~~aP~ILfIDE 432 (816)
.+++|++|++|+|||+++++++.+. +..++.+. ..++.- .+.....-...++++.+....|..|++.|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 4579999999999999999999875 23333332 111110 00111223467788888899999999999
Q ss_pred cc
Q 003476 433 ID 434 (816)
Q Consensus 433 ID 434 (816)
+-
T Consensus 224 iR 225 (323)
T PRK13833 224 VR 225 (323)
T ss_pred cC
Confidence 83
No 394
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.67 E-value=0.0019 Score=68.39 Aligned_cols=38 Identities=24% Similarity=0.501 Sum_probs=31.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 003476 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (816)
Q Consensus 364 ~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~ 403 (816)
.|..++|.||||+|||++|+.||..+|++++++ .+++.
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~--gdllr 42 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINM--GNILR 42 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEEC--ChHHH
Confidence 345599999999999999999999999887765 44443
No 395
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.67 E-value=0.0019 Score=72.27 Aligned_cols=73 Identities=27% Similarity=0.438 Sum_probs=48.7
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCC--cEEEeec-hhhHH-------H-H----hhcchHHHHHHHHHHHhcCCE
Q 003476 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSA-SEFVE-------L-Y----VGMGASRVRDLFARAKKEAPS 426 (816)
Q Consensus 362 ~~~pkGVLL~GPPGTGKT~LAkALA~elgv--pfi~is~-s~~~~-------~-~----vG~~~~~vr~lF~~A~~~aP~ 426 (816)
.+..+++|++||+|+|||++++++++.... .++.+.- .++.- . + .+...-...++++.+....|.
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD 238 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPD 238 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCC
Confidence 345668999999999999999999987642 2222211 11100 0 0 112223466888888899999
Q ss_pred EEEEcCcc
Q 003476 427 IIFIDEID 434 (816)
Q Consensus 427 ILfIDEID 434 (816)
.|++.|+-
T Consensus 239 ~IivGEiR 246 (344)
T PRK13851 239 RILLGEMR 246 (344)
T ss_pred eEEEEeeC
Confidence 99999974
No 396
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.67 E-value=0.0061 Score=74.50 Aligned_cols=118 Identities=19% Similarity=0.179 Sum_probs=65.6
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHh---cCCcEEEeechhhHH-H---Hhh------------cchHHHHHHHHHHH
Q 003476 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASEFVE-L---YVG------------MGASRVRDLFARAK 421 (816)
Q Consensus 361 g~~~pkGVLL~GPPGTGKT~LAkALA~e---lgvpfi~is~s~~~~-~---~vG------------~~~~~vr~lF~~A~ 421 (816)
|.....-++++||||||||+|+..++.+ .|-.+++++..+-.. . -.| ..+..+..+-...+
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 3444556889999999999999765443 366666666543222 0 001 11111222222234
Q ss_pred hcCCEEEEEcCccchhhccC--CccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEc
Q 003476 422 KEAPSIIFIDEIDAVAKSRD--GRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (816)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~--~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaAT 478 (816)
...+.+|+||-|.++..... +......-..+.+.++++|..|..+-...++.+|.+-
T Consensus 136 ~~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TN 194 (790)
T PRK09519 136 SGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFIN 194 (790)
T ss_pred cCCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 55789999999999885211 1100011123344556666666555455677777664
No 397
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.66 E-value=0.0025 Score=64.95 Aligned_cols=35 Identities=29% Similarity=0.559 Sum_probs=28.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 003476 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (816)
Q Consensus 367 GVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~ 403 (816)
.|+|.||||+||||+|+.||+. .++.+++..++..
T Consensus 2 riiilG~pGaGK~T~A~~La~~--~~i~hlstgd~~r 36 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDILR 36 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHHhH
Confidence 4899999999999999999999 5555666555443
No 398
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.65 E-value=0.0019 Score=64.27 Aligned_cols=32 Identities=31% Similarity=0.478 Sum_probs=28.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEEee
Q 003476 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (816)
Q Consensus 366 kGVLL~GPPGTGKT~LAkALA~elgvpfi~is 397 (816)
+.++|+|+||+|||++++.+|..+|.||+..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 45899999999999999999999999998653
No 399
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.64 E-value=0.0094 Score=61.27 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 003476 366 RGVLLVGLPGTGKTLLAKAVA 386 (816)
Q Consensus 366 kGVLL~GPPGTGKT~LAkALA 386 (816)
+.++|+||.|+|||+|.|.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 359999999999999999998
No 400
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.63 E-value=0.002 Score=64.89 Aligned_cols=34 Identities=26% Similarity=0.538 Sum_probs=30.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeec
Q 003476 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 398 (816)
Q Consensus 365 pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~ 398 (816)
++.|+|+||+|+|||++++.+|+.++++++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4569999999999999999999999999987654
No 401
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.62 E-value=0.0046 Score=66.72 Aligned_cols=94 Identities=20% Similarity=0.287 Sum_probs=56.6
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC---CcEEEeec-hhhHH-
Q 003476 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSA-SEFVE- 403 (816)
Q Consensus 329 vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elg---vpfi~is~-s~~~~- 403 (816)
.+++++.-.++..+.|++++. . ....+++.||+|+|||++++++..+.. ..++.+.- .++.-
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~---~----------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~ 123 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLE---K----------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIP 123 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHh---c----------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCC
Confidence 457777555554444444331 1 112489999999999999999987663 23444421 11110
Q ss_pred ----HHhh-cchHHHHHHHHHHHhcCCEEEEEcCccc
Q 003476 404 ----LYVG-MGASRVRDLFARAKKEAPSIIFIDEIDA 435 (816)
Q Consensus 404 ----~~vG-~~~~~vr~lF~~A~~~aP~ILfIDEIDa 435 (816)
..+. .......+++..+....|++|+|+|+..
T Consensus 124 ~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 124 GINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 0011 1112356777778888999999999843
No 402
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.60 E-value=0.0041 Score=70.31 Aligned_cols=68 Identities=24% Similarity=0.352 Sum_probs=45.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC-----CcEEEeech-hhH-----------HHHhhcchHHHHHHHHHHHhcCCEEEE
Q 003476 367 GVLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSAS-EFV-----------ELYVGMGASRVRDLFARAKKEAPSIIF 429 (816)
Q Consensus 367 GVLL~GPPGTGKT~LAkALA~elg-----vpfi~is~s-~~~-----------~~~vG~~~~~vr~lF~~A~~~aP~ILf 429 (816)
.+|++||+|+|||+++++++.... ..++.+.-. ++. ..-+|.......+++..+....|++|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 488999999999999999988762 334444211 111 111222223456677778888999999
Q ss_pred EcCcc
Q 003476 430 IDEID 434 (816)
Q Consensus 430 IDEID 434 (816)
++|+.
T Consensus 231 vGEiR 235 (372)
T TIGR02525 231 VGEIR 235 (372)
T ss_pred eCCCC
Confidence 99984
No 403
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.59 E-value=0.0079 Score=64.49 Aligned_cols=57 Identities=25% Similarity=0.319 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCC
Q 003476 411 SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (816)
Q Consensus 411 ~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd 482 (816)
..-|-++.+|-...|.++++||-- .+-+...+..+..||.++. . .+..|+..|...+
T Consensus 144 Q~QRV~lARAL~~~p~lllLDEP~-----------~gvD~~~~~~i~~lL~~l~---~-eg~tIl~vtHDL~ 200 (254)
T COG1121 144 QKQRVLLARALAQNPDLLLLDEPF-----------TGVDVAGQKEIYDLLKELR---Q-EGKTVLMVTHDLG 200 (254)
T ss_pred HHHHHHHHHHhccCCCEEEecCCc-----------ccCCHHHHHHHHHHHHHHH---H-CCCEEEEEeCCcH
Confidence 334566777778889999999942 2334455667778888775 2 2667777777654
No 404
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.59 E-value=0.0029 Score=66.05 Aligned_cols=95 Identities=26% Similarity=0.392 Sum_probs=50.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH-HhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCcccc
Q 003476 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL-YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRI 446 (816)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~-~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~ 446 (816)
++|+||+|||||.+|-++|+..|.|++..+.-++... -+|.+ +....-++ .-+ =+++||-..--
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sg-rp~~~el~----~~~-RiyL~~r~l~~--------- 68 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSG-RPTPSELK----GTR-RIYLDDRPLSD--------- 68 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT----SGGGT----T-E-EEES----GGG---------
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccC-CCCHHHHc----ccc-eeeeccccccC---------
Confidence 6899999999999999999999999999987655432 23322 11111111 112 37888643211
Q ss_pred ccchHHHHHHHHHHhhccCCCCCCcEEEEEEc
Q 003476 447 VSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (816)
Q Consensus 447 ~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaAT 478 (816)
+.-..++....|+..++......++|+=+-+
T Consensus 69 -G~i~a~ea~~~Li~~v~~~~~~~~~IlEGGS 99 (233)
T PF01745_consen 69 -GIINAEEAHERLISEVNSYSAHGGLILEGGS 99 (233)
T ss_dssp --S--HHHHHHHHHHHHHTTTTSSEEEEEE--
T ss_pred -CCcCHHHHHHHHHHHHHhccccCceEEeCch
Confidence 1122344566777777777775666665555
No 405
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.58 E-value=0.026 Score=60.30 Aligned_cols=133 Identities=16% Similarity=0.251 Sum_probs=73.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCC---cEEEeech--hhHHHHh-----hc--ch-------HHHHH----HHHH
Q 003476 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEV---PFISCSAS--EFVELYV-----GM--GA-------SRVRD----LFAR 419 (816)
Q Consensus 363 ~~pkGVLL~GPPGTGKT~LAkALA~elgv---pfi~is~s--~~~~~~v-----G~--~~-------~~vr~----lF~~ 419 (816)
..|-.+++.|++|||||+|++.+.....- +++.+... .....|+ .. .. .+... ....
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k 90 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKK 90 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhh
Confidence 34556999999999999999999876532 22222211 1111111 00 00 01111 1111
Q ss_pred HHh---cCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccc
Q 003476 420 AKK---EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDR 496 (816)
Q Consensus 420 A~~---~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr 496 (816)
... ..+++|++|++-. . ..+.+.+.+++..-. .-++-+|..+.....|++.++. -.+.
T Consensus 91 ~~~~k~~~~~LiIlDD~~~---~----------~~k~~~l~~~~~~gR----H~~is~i~l~Q~~~~lp~~iR~--n~~y 151 (241)
T PF04665_consen 91 SPQKKNNPRFLIILDDLGD---K----------KLKSKILRQFFNNGR----HYNISIIFLSQSYFHLPPNIRS--NIDY 151 (241)
T ss_pred hcccCCCCCeEEEEeCCCC---c----------hhhhHHHHHHHhccc----ccceEEEEEeeecccCCHHHhh--cceE
Confidence 111 2367999999632 0 112345666665322 3457888888888899998855 5565
Q ss_pred eEEecCCCHHHHHHHHHHH
Q 003476 497 VVMVETPDKIGREAILKVH 515 (816)
Q Consensus 497 ~I~v~~Pd~~eR~~ILk~~ 515 (816)
.+.+. -+..+..-|++.+
T Consensus 152 ~i~~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 152 FIIFN-NSKRDLENIYRNM 169 (241)
T ss_pred EEEec-CcHHHHHHHHHhc
Confidence 55554 4566655555544
No 406
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.58 E-value=0.0057 Score=66.60 Aligned_cols=37 Identities=22% Similarity=0.184 Sum_probs=28.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc----C-CcEEEeechh
Q 003476 364 PPRGVLLVGLPGTGKTLLAKAVAGEA----E-VPFISCSASE 400 (816)
Q Consensus 364 ~pkGVLL~GPPGTGKT~LAkALA~el----g-vpfi~is~s~ 400 (816)
.++.++|+||+|+|||+++..+|..+ | ..+..+++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 46679999999999999999998754 3 5555565544
No 407
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.57 E-value=0.008 Score=66.34 Aligned_cols=117 Identities=17% Similarity=0.158 Sum_probs=63.9
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---------CCcEEEeechhh------HHHH--hhcch-------------
Q 003476 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASEF------VELY--VGMGA------------- 410 (816)
Q Consensus 361 g~~~pkGVLL~GPPGTGKT~LAkALA~el---------gvpfi~is~s~~------~~~~--vG~~~------------- 410 (816)
|.....-++|+||||+|||.|+-.+|..+ +..+++++..+- .+.. .|...
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i~~~~~~ 177 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAY 177 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccEEEEeCC
Confidence 34555668899999999999999998653 236667765441 1100 01100
Q ss_pred ------HHHHHHHHHHHh-cCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcC
Q 003476 411 ------SRVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (816)
Q Consensus 411 ------~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN 479 (816)
..+..+...... ..+++|+||=|-++....-.. .....++.+.+++++..+..+....++.||.++.
T Consensus 178 ~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~--~~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnq 251 (317)
T PRK04301 178 NSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVG--RGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 251 (317)
T ss_pred CHHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccC--CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEece
Confidence 011122222223 456799999999876532110 0112234454666555554443445666666654
No 408
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.54 E-value=0.016 Score=64.37 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=27.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeec
Q 003476 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSA 398 (816)
Q Consensus 363 ~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~ 398 (816)
..|.-++|+||+|+|||+++..+|..+ +..+..+++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 456779999999999999999999865 444444444
No 409
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.54 E-value=0.0065 Score=66.67 Aligned_cols=117 Identities=16% Similarity=0.175 Sum_probs=63.3
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---------CCcEEEeechh-h-----HHH--HhhcchH------------
Q 003476 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASE-F-----VEL--YVGMGAS------------ 411 (816)
Q Consensus 361 g~~~pkGVLL~GPPGTGKT~LAkALA~el---------gvpfi~is~s~-~-----~~~--~vG~~~~------------ 411 (816)
|.....-++++||||+|||+|+-.+|..+ +-..++++..+ | .+. ..+....
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl~~~~~~~~i~i~~~~ 170 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPDEVLKNIYVARAY 170 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhceEEEecC
Confidence 34555568899999999999999998663 23677776554 1 110 0011100
Q ss_pred -------HHHHHHHHHHhc--CCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcC
Q 003476 412 -------RVRDLFARAKKE--APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (816)
Q Consensus 412 -------~vr~lF~~A~~~--aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN 479 (816)
.+.++.+..... .+++|+||-|-++....-.+ .....++.+.+++++..+..+....++.||.+..
T Consensus 171 ~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r~e~~~--~~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tnq 245 (310)
T TIGR02236 171 NSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFRAEYVG--RGALAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 245 (310)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhhHhhcC--chhHHHHHHHHHHHHHHHHHHHHHhCcEEEEece
Confidence 112222333333 36799999988875432110 0112234455666555554444445666665543
No 410
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.51 E-value=0.0045 Score=61.20 Aligned_cols=35 Identities=37% Similarity=0.583 Sum_probs=24.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 003476 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (816)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~ 403 (816)
|.|+|+||||||+|+++|+.. |.+++.-.+..+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar~~~~ 36 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYAREIIE 36 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecHHHHHH
Confidence 789999999999999999998 99887544444443
No 411
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.51 E-value=0.0072 Score=60.58 Aligned_cols=105 Identities=23% Similarity=0.279 Sum_probs=58.6
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCC--cEEEeechh-------hH----------HHHhh---------cchHHHH
Q 003476 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASE-------FV----------ELYVG---------MGASRVR 414 (816)
Q Consensus 363 ~~pkGVLL~GPPGTGKT~LAkALA~elgv--pfi~is~s~-------~~----------~~~vG---------~~~~~vr 414 (816)
.+...+.|.||+|+|||+|++.+++.... --+.+++.. +. ..+.+ .+..+.|
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qr 103 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQR 103 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHH
Confidence 34445899999999999999999996421 001111100 00 00111 1123344
Q ss_pred HHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCC
Q 003476 415 DLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (816)
Q Consensus 415 ~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd 482 (816)
-.+..|-...|.|+++||-.+- .+......+.+++..+. .+ +..+|.+|+.++
T Consensus 104 v~laral~~~p~illlDEPt~~-----------LD~~~~~~l~~~l~~~~---~~-g~tiii~th~~~ 156 (173)
T cd03230 104 LALAQALLHDPELLILDEPTSG-----------LDPESRREFWELLRELK---KE-GKTILLSSHILE 156 (173)
T ss_pred HHHHHHHHcCCCEEEEeCCccC-----------CCHHHHHHHHHHHHHHH---HC-CCEEEEECCCHH
Confidence 4566677788999999996432 33344455555565543 12 335556666554
No 412
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.49 E-value=0.0082 Score=62.21 Aligned_cols=124 Identities=27% Similarity=0.428 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHHhhcchHHHHHHHHHH
Q 003476 341 KEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARA 420 (816)
Q Consensus 341 K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~~vG~~~~~vr~lF~~A 420 (816)
+..|..+|....+| |.....-++|+|+-|+|||++.+.|+.+ ++.-+.... ....... ..
T Consensus 34 ~~wl~~~Var~~~p------g~k~d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~------~~kd~~~----~l 93 (198)
T PF05272_consen 34 RKWLVGAVARAYEP------GCKNDTVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDF------DDKDFLE----QL 93 (198)
T ss_pred HHHHHHHHHHHhCC------CCcCceeeeEecCCcccHHHHHHHHhHH----hccCccccC------CCcHHHH----HH
Confidence 45555555554444 4455666889999999999999999766 221111100 0011111 11
Q ss_pred HhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhh-ccCCCC---------CCcEEEEEEcCCCCCC-CcccC
Q 003476 421 KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE-MDGFDS---------NSAVIVLGATNRSDVL-DPALR 489 (816)
Q Consensus 421 ~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e-mDg~~~---------~~~ViVIaATN~pd~L-DpALl 489 (816)
... -|+.|||++.+.+.. ...+..+++. .+.+.. ....++|||||..+-| |+.=-
T Consensus 94 ~~~--~iveldEl~~~~k~~------------~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGn 159 (198)
T PF05272_consen 94 QGK--WIVELDELDGLSKKD------------VEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGN 159 (198)
T ss_pred HHh--HheeHHHHhhcchhh------------HHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCC
Confidence 111 289999999876321 1233444443 222221 2346889999998755 45555
Q ss_pred CCCcccceEEec
Q 003476 490 RPGRFDRVVMVE 501 (816)
Q Consensus 490 RpGRFdr~I~v~ 501 (816)
| ||= .|.+.
T Consensus 160 R--Rf~-~v~v~ 168 (198)
T PF05272_consen 160 R--RFW-PVEVS 168 (198)
T ss_pred e--EEE-EEEEc
Confidence 5 663 44443
No 413
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.48 E-value=0.011 Score=64.60 Aligned_cols=115 Identities=22% Similarity=0.412 Sum_probs=71.0
Q ss_pred CCCe-EEEEcCCCCcHHHHHHHHHHhcCC----cEEEee---------chhhHH-HHhhcchHHHHHHHHHHHhcCCEEE
Q 003476 364 PPRG-VLLVGLPGTGKTLLAKAVAGEAEV----PFISCS---------ASEFVE-LYVGMGASRVRDLFARAKKEAPSII 428 (816)
Q Consensus 364 ~pkG-VLL~GPPGTGKT~LAkALA~elgv----pfi~is---------~s~~~~-~~vG~~~~~vr~lF~~A~~~aP~IL 428 (816)
.|+| ||.+||.|+|||+..-++-...|. +.+.+. -..++. .-+|..-..+...++.|....|+||
T Consensus 123 ~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVI 202 (353)
T COG2805 123 SPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVI 202 (353)
T ss_pred CCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEE
Confidence 3556 667799999999888888877653 333332 112221 3455555556677777888899999
Q ss_pred EEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHH
Q 003476 429 FIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIG 507 (816)
Q Consensus 429 fIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~e 507 (816)
++-|+-.. ++++.-|+.-+ .|-+|++|-...+ |.. -.||.|.+-++..++
T Consensus 203 lvGEmRD~-----------------ETi~~ALtAAE-----TGHLV~~TLHT~s----A~~---ti~RiidvFp~~ek~ 252 (353)
T COG2805 203 LVGEMRDL-----------------ETIRLALTAAE-----TGHLVFGTLHTNS----AAK---TIDRIIDVFPAEEKD 252 (353)
T ss_pred EEeccccH-----------------HHHHHHHHHHh-----cCCEEEEeccccc----HHH---HHHHHHHhCChhhhH
Confidence 99997432 45555566544 5667887754322 221 235566666665443
No 414
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.48 E-value=0.0088 Score=60.86 Aligned_cols=71 Identities=24% Similarity=0.171 Sum_probs=42.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcCCc--EEEeechhh--HHHHh-hcchHHHHHHHHHHHhcCCEEEEEcCcc
Q 003476 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVP--FISCSASEF--VELYV-GMGASRVRDLFARAKKEAPSIIFIDEID 434 (816)
Q Consensus 364 ~pkGVLL~GPPGTGKT~LAkALA~elgvp--fi~is~s~~--~~~~v-G~~~~~vr~lF~~A~~~aP~ILfIDEID 434 (816)
+..-+.|.||.|+|||+|++.+++..... -+.+++..+ ..... -.+..+.+-.+..|....|.++++||--
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPt 99 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 44458899999999999999999865210 111111100 00000 1122344555666667789999999964
No 415
>PRK14528 adenylate kinase; Provisional
Probab=96.46 E-value=0.0027 Score=64.76 Aligned_cols=31 Identities=32% Similarity=0.613 Sum_probs=27.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEEe
Q 003476 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (816)
Q Consensus 366 kGVLL~GPPGTGKT~LAkALA~elgvpfi~i 396 (816)
+.+++.||||+|||++|+.+|...|++.+++
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 3589999999999999999999999887664
No 416
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.46 E-value=0.0026 Score=63.65 Aligned_cols=34 Identities=21% Similarity=0.442 Sum_probs=27.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 003476 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (816)
Q Consensus 367 GVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~ 402 (816)
-+++.||||+|||++++.++.++|.+.+ +.+++.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~--~~g~~~ 38 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHL--STGDLL 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE--eHHHHH
Confidence 4889999999999999999999987654 444443
No 417
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.46 E-value=0.01 Score=59.07 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 003476 365 PRGVLLVGLPGTGKTLLAKAVA 386 (816)
Q Consensus 365 pkGVLL~GPPGTGKT~LAkALA 386 (816)
++..+++||.|+|||.+.++++
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~ 42 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIG 42 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999984
No 418
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.45 E-value=0.0068 Score=67.39 Aligned_cols=71 Identities=27% Similarity=0.272 Sum_probs=47.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHHhhcch--------HHHHH---HHHHHHhcCCEEEEEcCc
Q 003476 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGA--------SRVRD---LFARAKKEAPSIIFIDEI 433 (816)
Q Consensus 365 pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~~vG~~~--------~~vr~---lF~~A~~~aP~ILfIDEI 433 (816)
.+.++|.|+||+|||+|+++++...+.+++.-.+.++.....+... ..+.. ....+...++.|||+|-
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~~~~~~~~l~~~d~~~i~~g~~~~~~~~~~~a~~iif~D~- 240 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEEKLGGDEALQYSDYAQIALGQQRYIDYAVRHAHKIAFIDT- 240 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCeEEEcC-
Confidence 3469999999999999999999999999987766666554321100 11111 12233344566999995
Q ss_pred cch
Q 003476 434 DAV 436 (816)
Q Consensus 434 DaL 436 (816)
+.+
T Consensus 241 ~~~ 243 (325)
T TIGR01526 241 DFI 243 (325)
T ss_pred ChH
Confidence 444
No 419
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.45 E-value=0.0085 Score=59.99 Aligned_cols=41 Identities=29% Similarity=0.361 Sum_probs=31.4
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcC---CcEEEeechhhHH
Q 003476 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEFVE 403 (816)
Q Consensus 363 ~~pkGVLL~GPPGTGKT~LAkALA~elg---vpfi~is~s~~~~ 403 (816)
..|.-++|+|+||+|||++|++++..+. ...+.++...+..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~ 48 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELRE 48 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHh
Confidence 4566799999999999999999999875 2345556555544
No 420
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.45 E-value=0.01 Score=65.77 Aligned_cols=116 Identities=20% Similarity=0.203 Sum_probs=62.7
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---------CCcEEEeechh-h-----HHH--Hhhcc--------------
Q 003476 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASE-F-----VEL--YVGMG-------------- 409 (816)
Q Consensus 361 g~~~pkGVLL~GPPGTGKT~LAkALA~el---------gvpfi~is~s~-~-----~~~--~vG~~-------------- 409 (816)
|.....-+.|+||||+|||.|+..+|-.. +...++++... | .+. -.+..
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~ 171 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAY 171 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCC
Confidence 34445558899999999999999887422 34566666443 1 110 00110
Q ss_pred -h----HHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEc
Q 003476 410 -A----SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (816)
Q Consensus 410 -~----~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaAT 478 (816)
. ..+..+-.......+.+|+||-|-++.+..-.+ .+.-.++.+.+++++..|..+....++.||.+.
T Consensus 172 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~--~g~~~~r~~~l~~~~~~L~~la~~~~vavvitN 243 (313)
T TIGR02238 172 TSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSG--RGELSERQQKLAQMLSRLNKISEEFNVAVFVTN 243 (313)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccC--ccchHHHHHHHHHHHHHHHHHHHHcCcEEEEEC
Confidence 0 111222222334568899999999886532111 111223344466666655544444566666553
No 421
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.44 E-value=0.0082 Score=65.12 Aligned_cols=39 Identities=23% Similarity=0.438 Sum_probs=29.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 003476 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (816)
Q Consensus 365 pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~ 404 (816)
++-++|.||||||||++|+.++..+. .++.++...+...
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r~~ 40 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLRQS 40 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHHHH
Confidence 34588999999999999999999983 3444555555544
No 422
>PRK14527 adenylate kinase; Provisional
Probab=96.43 E-value=0.0026 Score=64.81 Aligned_cols=38 Identities=26% Similarity=0.438 Sum_probs=30.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 003476 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (816)
Q Consensus 363 ~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~ 402 (816)
+.|.-++++||||+|||++|+.+|.+.+.+.++ ..+++
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is--~gd~~ 41 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLS--TGDIL 41 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC--ccHHH
Confidence 456679999999999999999999999876654 34444
No 423
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.42 E-value=0.0061 Score=68.04 Aligned_cols=83 Identities=24% Similarity=0.360 Sum_probs=55.4
Q ss_pred cc-cccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC-CcEEEeechhhHHHHhhc
Q 003476 331 FA-DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-VPFISCSASEFVELYVGM 408 (816)
Q Consensus 331 f~-DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elg-vpfi~is~s~~~~~~vG~ 408 (816)
|+ ++.|++++.+ ++|++++.... . ....-+-++|.||+|+|||+|++.|-.-+. .+++.+..+-+.+.-...
T Consensus 59 f~~~~~G~~~~i~---~lV~~fk~AA~--g-~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL~L 132 (358)
T PF08298_consen 59 FEDEFYGMEETIE---RLVNYFKSAAQ--G-LEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPLHL 132 (358)
T ss_pred ccccccCcHHHHH---HHHHHHHHHHh--c-cCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChhhh
Confidence 55 8999998655 56666665432 1 122345688999999999999999987552 377776655555544444
Q ss_pred chHHHHHHHHH
Q 003476 409 GASRVRDLFAR 419 (816)
Q Consensus 409 ~~~~vr~lF~~ 419 (816)
-...+|+.|..
T Consensus 133 ~P~~~r~~~~~ 143 (358)
T PF08298_consen 133 FPKELRREFED 143 (358)
T ss_pred CCHhHHHHHHH
Confidence 45666766654
No 424
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.42 E-value=0.021 Score=66.83 Aligned_cols=39 Identities=28% Similarity=0.330 Sum_probs=30.4
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHh----cCCcEEEeech
Q 003476 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE----AEVPFISCSAS 399 (816)
Q Consensus 361 g~~~pkGVLL~GPPGTGKT~LAkALA~e----lgvpfi~is~s 399 (816)
|..+.+.+|++||||||||+||..++.+ .|-+.++++..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 4556677999999999999999988543 36787777754
No 425
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.41 E-value=0.01 Score=59.88 Aligned_cols=27 Identities=41% Similarity=0.465 Sum_probs=23.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 003476 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (816)
Q Consensus 363 ~~pkGVLL~GPPGTGKT~LAkALA~el 389 (816)
.+...+.|.||+|+|||+|++.+++..
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344558999999999999999999864
No 426
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.40 E-value=0.034 Score=64.16 Aligned_cols=73 Identities=22% Similarity=0.361 Sum_probs=46.0
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc----CCcEEEeechhhHH-------HH---------h-h--cch-HHHHHHHH
Q 003476 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVE-------LY---------V-G--MGA-SRVRDLFA 418 (816)
Q Consensus 363 ~~pkGVLL~GPPGTGKT~LAkALA~el----gvpfi~is~s~~~~-------~~---------v-G--~~~-~~vr~lF~ 418 (816)
..|.-++++||+|+|||+++..+|..+ |..+..+++..+.. .+ . + ... ....+.++
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 457789999999999999988887653 55666666653321 00 0 0 111 22345566
Q ss_pred HHHhcCCEEEEEcCccc
Q 003476 419 RAKKEAPSIIFIDEIDA 435 (816)
Q Consensus 419 ~A~~~aP~ILfIDEIDa 435 (816)
.+......+|+||=.-.
T Consensus 177 ~~~~~~~DvVIIDTaGr 193 (428)
T TIGR00959 177 YAKENGFDVVIVDTAGR 193 (428)
T ss_pred HHHhcCCCEEEEeCCCc
Confidence 66566667888887543
No 427
>PRK02496 adk adenylate kinase; Provisional
Probab=96.40 E-value=0.0027 Score=64.03 Aligned_cols=30 Identities=33% Similarity=0.583 Sum_probs=26.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEe
Q 003476 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (816)
Q Consensus 367 GVLL~GPPGTGKT~LAkALA~elgvpfi~i 396 (816)
-+++.||||+|||++|+.||..++++.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 389999999999999999999999877654
No 428
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.40 E-value=0.015 Score=59.42 Aligned_cols=28 Identities=36% Similarity=0.582 Sum_probs=24.1
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 003476 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (816)
Q Consensus 362 ~~~pkGVLL~GPPGTGKT~LAkALA~el 389 (816)
..+...+.|.||+|+|||+|.+.+++..
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445569999999999999999999976
No 429
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.40 E-value=0.018 Score=57.49 Aligned_cols=32 Identities=38% Similarity=0.422 Sum_probs=26.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCcEEEeech
Q 003476 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (816)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~el---gvpfi~is~s 399 (816)
++++||||+|||+++..+|..+ +..+..+++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 6899999999999999998764 6666666665
No 430
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.39 E-value=0.024 Score=57.84 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=23.3
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 003476 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (816)
Q Consensus 363 ~~pkGVLL~GPPGTGKT~LAkALA~el 389 (816)
.+..-+.|.||+|+|||+|++++++..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 445568999999999999999999964
No 431
>PLN02199 shikimate kinase
Probab=96.39 E-value=0.017 Score=63.26 Aligned_cols=33 Identities=33% Similarity=0.607 Sum_probs=30.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEee
Q 003476 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (816)
Q Consensus 365 pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is 397 (816)
.++|+|+|.+|+|||++++.+|..+|++|+..+
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 357999999999999999999999999998754
No 432
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.38 E-value=0.0027 Score=63.49 Aligned_cols=28 Identities=36% Similarity=0.692 Sum_probs=26.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEE
Q 003476 368 VLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (816)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgvpfi~ 395 (816)
+-+.||||||||++|+-||..+|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5688999999999999999999999986
No 433
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.38 E-value=0.0055 Score=61.96 Aligned_cols=34 Identities=29% Similarity=0.460 Sum_probs=28.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 003476 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (816)
Q Consensus 367 GVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~ 403 (816)
.++++|.||||||++++.|+ ++|.++++++ +|..
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~--el~~ 35 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN--ELAK 35 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH--HHHH
Confidence 37899999999999999999 9999988764 5543
No 434
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.37 E-value=0.015 Score=66.97 Aligned_cols=36 Identities=25% Similarity=0.196 Sum_probs=26.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEeechh
Q 003476 365 PRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASE 400 (816)
Q Consensus 365 pkGVLL~GPPGTGKT~LAkALA~el-----gvpfi~is~s~ 400 (816)
++.++|+||+|+|||+++..||..+ +..+..+++..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 5679999999999999988887643 34555555544
No 435
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.37 E-value=0.0082 Score=67.23 Aligned_cols=116 Identities=21% Similarity=0.185 Sum_probs=62.7
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---------CCcEEEeechh------hHHHH--hhcch-------------
Q 003476 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASE------FVELY--VGMGA------------- 410 (816)
Q Consensus 361 g~~~pkGVLL~GPPGTGKT~LAkALA~el---------gvpfi~is~s~------~~~~~--vG~~~------------- 410 (816)
|.....-..|+||||||||.|+..+|-.. +..+++++... +.... .|...
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~ 201 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAY 201 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCC
Confidence 34444557899999999999999887432 24556666533 11110 01100
Q ss_pred ------HHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEc
Q 003476 411 ------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (816)
Q Consensus 411 ------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaAT 478 (816)
..+..+-.......+++|+||-|-++.+..-.+ .+.-.++.+.+++++..|..+....++.||.+.
T Consensus 202 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~--rg~l~~rq~~L~~~~~~L~~lA~~~~vavvvTN 273 (344)
T PLN03187 202 TYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTG--RGELAERQQKLAQMLSRLTKIAEEFNVAVYMTN 273 (344)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccC--ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 111222222334568899999999886542111 111234455566666655444334556665553
No 436
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.37 E-value=0.0089 Score=71.18 Aligned_cols=28 Identities=36% Similarity=0.437 Sum_probs=24.1
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 003476 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (816)
Q Consensus 362 ~~~pkGVLL~GPPGTGKT~LAkALA~el 389 (816)
.++..-+.|+||+|+|||+|++.+++..
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4455669999999999999999999865
No 437
>PRK13808 adenylate kinase; Provisional
Probab=96.37 E-value=0.011 Score=65.95 Aligned_cols=34 Identities=24% Similarity=0.485 Sum_probs=28.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 003476 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (816)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~ 403 (816)
|+|+||||+|||++++.||..+|++.++ ..+++.
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is--~gdlLR 36 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLS--TGDMLR 36 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceec--ccHHHH
Confidence 8999999999999999999999876654 455543
No 438
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.37 E-value=0.017 Score=65.84 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcC
Q 003476 366 RGVLLVGLPGTGKTLLAKAVAGEAE 390 (816)
Q Consensus 366 kGVLL~GPPGTGKT~LAkALA~elg 390 (816)
.-++|+||||+|||+|++.+++...
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhc
Confidence 3499999999999999999999753
No 439
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.36 E-value=0.0031 Score=65.30 Aligned_cols=34 Identities=35% Similarity=0.652 Sum_probs=28.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 003476 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (816)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~ 403 (816)
|++.||||+|||++|+.||...|++.++ .++++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is--~gdllr 35 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS--TGDLLR 35 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee--hhHHHH
Confidence 7899999999999999999999987765 344443
No 440
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.34 E-value=0.012 Score=74.18 Aligned_cols=179 Identities=21% Similarity=0.234 Sum_probs=99.0
Q ss_pred CCCCCeEEEEcCCCCcHHHHH-HHHHHhcCCcEEEeechhhHHHHhhcchHHHHHHHHHHHhc---------CC------
Q 003476 362 ARPPRGVLLVGLPGTGKTLLA-KAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKE---------AP------ 425 (816)
Q Consensus 362 ~~~pkGVLL~GPPGTGKT~LA-kALA~elgvpfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~---------aP------ 425 (816)
...-++++++||||+|||+|. -++-.+.-+.++.++-+.... ++..++- +++-... -|
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-----T~s~ls~-Ler~t~yy~~tg~~~l~PK~~vK~ 1564 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-----TPSKLSV-LERETEYYPNTGVVRLYPKPVVKD 1564 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-----CHHHHHH-HHhhceeeccCCeEEEccCcchhh
Confidence 345678999999999999864 577778878887776553211 1122222 2221111 11
Q ss_pred EEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCC--------CCcEEEEEEcCCCCCCCcccCCCCcc---
Q 003476 426 SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS--------NSAVIVLGATNRSDVLDPALRRPGRF--- 494 (816)
Q Consensus 426 ~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~--------~~~ViVIaATN~pd~LDpALlRpGRF--- 494 (816)
-|||.|||. +...+.-. ..+ .--.+.+| .+-.||-. -.++++.+|+|.+..... .--+.||
T Consensus 1565 lVLFcDeIn-Lp~~~~y~----~~~-vI~FlR~l-~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gR-v~~~eRf~r~ 1636 (3164)
T COG5245 1565 LVLFCDEIN-LPYGFEYY----PPT-VIVFLRPL-VERQGFWSSIAVSWVTICGIILYGACNPGTDEGR-VKYYERFIRK 1636 (3164)
T ss_pred eEEEeeccC-CccccccC----CCc-eEEeeHHH-HHhcccccchhhhHhhhcceEEEccCCCCCCccc-CccHHHHhcC
Confidence 299999998 54332110 000 00001111 12233322 257999999998854431 1112233
Q ss_pred cceEEecCCCHHHHHHHHHHHHhcCCCCCcccc------------CH--------HHHHhhCCCCCHHHHHHHHHHHHHH
Q 003476 495 DRVVMVETPDKIGREAILKVHVSKKELPLAKDI------------DL--------GDIASMTTGFTGADLANLVNEAALL 554 (816)
Q Consensus 495 dr~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dv------------dl--------~~LA~~t~G~SgaDL~~LvneAa~~ 554 (816)
...+++..|.......|...++.+.-+ +-++. .+ ..-.....||+|+||-..++...-.
T Consensus 1637 ~v~vf~~ype~~SL~~Iyea~l~~s~l-~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i~~y 1715 (3164)
T COG5245 1637 PVFVFCCYPELASLRNIYEAVLMGSYL-CFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAIFGY 1715 (3164)
T ss_pred ceEEEecCcchhhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHHHhH
Confidence 346788899999999888877755321 11111 00 0011234689999999888765544
Q ss_pred H
Q 003476 555 A 555 (816)
Q Consensus 555 A 555 (816)
|
T Consensus 1716 a 1716 (3164)
T COG5245 1716 A 1716 (3164)
T ss_pred H
Confidence 4
No 441
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.34 E-value=0.019 Score=58.62 Aligned_cols=26 Identities=38% Similarity=0.584 Sum_probs=22.3
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHh
Q 003476 363 RPPRGVLLVGLPGTGKTLLAKAVAGE 388 (816)
Q Consensus 363 ~~pkGVLL~GPPGTGKT~LAkALA~e 388 (816)
.+..-+.|.||+|+|||+|++.+++.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34456899999999999999999974
No 442
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.31 E-value=0.011 Score=66.31 Aligned_cols=23 Identities=48% Similarity=0.606 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003476 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (816)
Q Consensus 367 GVLL~GPPGTGKT~LAkALA~el 389 (816)
-+++.|.||||||.||-.+|.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 37889999999999999999987
No 443
>PTZ00035 Rad51 protein; Provisional
Probab=96.30 E-value=0.012 Score=65.67 Aligned_cols=115 Identities=18% Similarity=0.206 Sum_probs=62.6
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhcC---------CcEEEeechh------hHHHH--hhcc--------------
Q 003476 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAE---------VPFISCSASE------FVELY--VGMG-------------- 409 (816)
Q Consensus 361 g~~~pkGVLL~GPPGTGKT~LAkALA~elg---------vpfi~is~s~------~~~~~--vG~~-------------- 409 (816)
|.....-+.|+||||+|||.|+..++.... -..++++... +.... .+..
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccC
Confidence 444555588999999999999999985433 3445555432 11110 0000
Q ss_pred -----hHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEE
Q 003476 410 -----ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 477 (816)
Q Consensus 410 -----~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaA 477 (816)
...+..+........+.+|+||-|-++.+..-.+ .+...++.+.+.+++..|..+....++.||.+
T Consensus 194 ~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~--~~~~~~r~~~l~~~~~~L~~la~~~~vavvvt 264 (337)
T PTZ00035 194 NHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSG--RGELAERQQHLGKFLRALQKLADEFNVAVVIT 264 (337)
T ss_pred CHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccC--cccHHHHHHHHHHHHHHHHHHHHHcCcEEEEe
Confidence 0111122222234567899999999876542110 11223445556666666554444456666644
No 444
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=0.013 Score=70.30 Aligned_cols=28 Identities=36% Similarity=0.455 Sum_probs=23.9
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHh
Q 003476 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (816)
Q Consensus 361 g~~~pkGVLL~GPPGTGKT~LAkALA~e 388 (816)
..+|.+.+-|+||+|.|||++|.-+-+-
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasLL~rf 517 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASLLLRF 517 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3566777999999999999999999773
No 445
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.29 E-value=0.0098 Score=67.95 Aligned_cols=41 Identities=22% Similarity=0.140 Sum_probs=33.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 003476 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (816)
Q Consensus 363 ~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~ 403 (816)
...+.|.|+|++|||||+|+++||..+|.+++.--+.++..
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~~ 257 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVF 257 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHHH
Confidence 34567999999999999999999999998876654444443
No 446
>PHA02624 large T antigen; Provisional
Probab=96.28 E-value=0.0072 Score=71.56 Aligned_cols=120 Identities=16% Similarity=0.124 Sum_probs=65.4
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHHhhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCC
Q 003476 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDG 442 (816)
Q Consensus 363 ~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~ 442 (816)
+..+.+||+||||||||+|+.+|++.++-..+.++++.-... |...-.....+++||++-.-.-....
T Consensus 429 PKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~~~ 496 (647)
T PHA02624 429 PKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADNKD 496 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeecccccccccc
Confidence 334489999999999999999999999555666765432211 22111112237888887533221100
Q ss_pred c-cccccchHHHHHHHHHHhhccCC-CC------CCc-----EEEEEEcCCCCCCCcccCCCCcccceEEecC
Q 003476 443 R-FRIVSNDEREQTLNQLLTEMDGF-DS------NSA-----VIVLGATNRSDVLDPALRRPGRFDRVVMVET 502 (816)
Q Consensus 443 ~-~~~~~~~e~~~~Ln~LL~emDg~-~~------~~~-----ViVIaATN~pd~LDpALlRpGRFdr~I~v~~ 502 (816)
- ...+.+ -+.-|-+.+||. .- ... --.|.|||. ..|+..+.- ||.+++.|..
T Consensus 497 Lp~G~~~d-----Nl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 497 LPSGQGMN-----NLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred CCcccccc-----hhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhccccc
Confidence 0 000011 012334445554 10 000 124557775 467777765 8888887754
No 447
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.27 E-value=0.031 Score=65.73 Aligned_cols=112 Identities=21% Similarity=0.209 Sum_probs=63.6
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc----CCcEEEeechhhHHH--------------Hhhc--------------
Q 003476 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVEL--------------YVGM-------------- 408 (816)
Q Consensus 361 g~~~pkGVLL~GPPGTGKT~LAkALA~el----gvpfi~is~s~~~~~--------------~vG~-------------- 408 (816)
|..+..-+||+|+||+|||+|+..++.+. |-++++++..+-.+. +...
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~ 106 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSE 106 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCccccc
Confidence 34556669999999999999999876532 667777765432221 1000
Q ss_pred --------chHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCC
Q 003476 409 --------GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (816)
Q Consensus 409 --------~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~ 480 (816)
-...+..+.+.+....|..|+||-+..+...-. ........+..++..+. ..++.+|.+++.
T Consensus 107 ~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~d------~~~~~r~~l~~L~~~Lk----~~g~TvLlt~~~ 176 (509)
T PRK09302 107 QEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGFS------NEAVVRRELRRLFAWLK----QKGVTAVITGER 176 (509)
T ss_pred ccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhhcc------CHHHHHHHHHHHHHHHH----hCCCEEEEEECC
Confidence 001122233334456788999999987642211 11122445566666554 234556666655
Q ss_pred CC
Q 003476 481 SD 482 (816)
Q Consensus 481 pd 482 (816)
..
T Consensus 177 ~~ 178 (509)
T PRK09302 177 GD 178 (509)
T ss_pred cc
Confidence 43
No 448
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.25 E-value=0.0039 Score=64.72 Aligned_cols=29 Identities=41% Similarity=0.665 Sum_probs=26.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEe
Q 003476 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (816)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgvpfi~i 396 (816)
|+++||||+|||++|+.||..++++.+++
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 89999999999999999999999777663
No 449
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.23 E-value=0.0076 Score=62.60 Aligned_cols=22 Identities=50% Similarity=0.853 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 003476 368 VLLVGLPGTGKTLLAKAVAGEA 389 (816)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~el 389 (816)
++|+|+||+|||++|+-+|+++
T Consensus 4 iIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHH
Confidence 7899999999999999999987
No 450
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.23 E-value=0.011 Score=65.47 Aligned_cols=116 Identities=15% Similarity=0.152 Sum_probs=62.4
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhcC---------CcEEEeechhh------HHHH--hhcch-------------
Q 003476 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAE---------VPFISCSASEF------VELY--VGMGA------------- 410 (816)
Q Consensus 361 g~~~pkGVLL~GPPGTGKT~LAkALA~elg---------vpfi~is~s~~------~~~~--vG~~~------------- 410 (816)
|..+..-+.++||||+|||+|+..+|..+. -..++++..+- .... .+...
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~ 171 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAY 171 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEecC
Confidence 445556688999999999999999886321 24566665441 1100 01100
Q ss_pred --H----HHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEc
Q 003476 411 --S----RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (816)
Q Consensus 411 --~----~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaAT 478 (816)
. .+..+........+++|+||-|-++.+..-.+ .+.-..+...+.+++..|..+....++.||.+.
T Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~--~~~~~~rq~~l~~~~~~L~~la~~~~vavv~tN 243 (316)
T TIGR02239 172 NTDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSG--RGELSARQMHLARFLRSLQRLADEFGVAVVITN 243 (316)
T ss_pred ChHHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCC--cchHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 1 11222222234568899999999886432110 011113334456666665544444556666554
No 451
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.22 E-value=0.017 Score=61.04 Aligned_cols=21 Identities=38% Similarity=0.330 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHh
Q 003476 368 VLLVGLPGTGKTLLAKAVAGE 388 (816)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~e 388 (816)
-+|+||||+|||+|+..+|-.
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999999853
No 452
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.22 E-value=0.033 Score=64.13 Aligned_cols=72 Identities=24% Similarity=0.228 Sum_probs=45.2
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH-------HH--------hh----cc-hHHHHHHHHH
Q 003476 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE-------LY--------VG----MG-ASRVRDLFAR 419 (816)
Q Consensus 363 ~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~-------~~--------vG----~~-~~~vr~lF~~ 419 (816)
.+|.-++|+||+|+|||+++..+|..+ |..+..+++..+.. .+ .. .. ....++.++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 456779999999999999999998765 66666666543321 00 10 01 1223445666
Q ss_pred HHhcCCEEEEEcCcc
Q 003476 420 AKKEAPSIIFIDEID 434 (816)
Q Consensus 420 A~~~aP~ILfIDEID 434 (816)
++...-.+||||=..
T Consensus 178 ~~~~~~DvViIDTaG 192 (429)
T TIGR01425 178 FKKENFDIIIVDTSG 192 (429)
T ss_pred HHhCCCCEEEEECCC
Confidence 665555688887653
No 453
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.22 E-value=0.013 Score=59.05 Aligned_cols=107 Identities=25% Similarity=0.342 Sum_probs=60.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCC--cEEEeechh--------hHH--HH-------hh------------cchH
Q 003476 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASE--------FVE--LY-------VG------------MGAS 411 (816)
Q Consensus 363 ~~pkGVLL~GPPGTGKT~LAkALA~elgv--pfi~is~s~--------~~~--~~-------vG------------~~~~ 411 (816)
.+..-+.|.||+|+|||+|++.+++.... --+.+++.+ +.. .| ++ .+..
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~ 102 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGE 102 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence 44556899999999999999999996521 012222111 000 00 01 0112
Q ss_pred HHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCC
Q 003476 412 RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (816)
Q Consensus 412 ~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~ 483 (816)
+.+-.+..|-...|.++++||--. +.+....+.+.+++.++.. +.+..+|.+|+.++.
T Consensus 103 ~qrl~laral~~~p~llllDEP~~-----------~LD~~~~~~~~~~l~~~~~---~~~~tiii~sh~~~~ 160 (180)
T cd03214 103 RQRVLLARALAQEPPILLLDEPTS-----------HLDIAHQIELLELLRRLAR---ERGKTVVMVLHDLNL 160 (180)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcc-----------CCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHH
Confidence 334445556667899999999643 2344445566666666531 113455666766543
No 454
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.22 E-value=0.0029 Score=68.28 Aligned_cols=80 Identities=21% Similarity=0.366 Sum_probs=50.7
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHH------hcCCcEEEeechhhHHH-HhhcchHHHHHHHHHHH--------hcCC
Q 003476 361 GARPPRGVLLVGLPGTGKTLLAKAVAG------EAEVPFISCSASEFVEL-YVGMGASRVRDLFARAK--------KEAP 425 (816)
Q Consensus 361 g~~~pkGVLL~GPPGTGKT~LAkALA~------elgvpfi~is~s~~~~~-~vG~~~~~vr~lF~~A~--------~~aP 425 (816)
..+.-..+||.||.|.||+.||+.+-. .+.-+|+.++|..+... -+..--..++..|.-|+ ....
T Consensus 204 a~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadg 283 (531)
T COG4650 204 AIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADG 283 (531)
T ss_pred HhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCC
Confidence 344455699999999999999999854 35679999999876431 00000011222332222 1234
Q ss_pred EEEEEcCccchhhcc
Q 003476 426 SIIFIDEIDAVAKSR 440 (816)
Q Consensus 426 ~ILfIDEIDaL~~~r 440 (816)
.++|+|||..++...
T Consensus 284 gmlfldeigelgade 298 (531)
T COG4650 284 GMLFLDEIGELGADE 298 (531)
T ss_pred ceEehHhhhhcCccH
Confidence 599999998887543
No 455
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.21 E-value=0.03 Score=58.18 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH
Q 003476 365 PRGVLLVGLPGTGKTLLAKAVAG 387 (816)
Q Consensus 365 pkGVLL~GPPGTGKT~LAkALA~ 387 (816)
.+-++|+||.|+|||++.+.++.
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35589999999999999999974
No 456
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.19 E-value=0.013 Score=65.56 Aligned_cols=117 Identities=15% Similarity=0.196 Sum_probs=65.5
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---------CCcEEEeechh------hHHHH--hhcc--------------
Q 003476 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASE------FVELY--VGMG-------------- 409 (816)
Q Consensus 361 g~~~pkGVLL~GPPGTGKT~LAkALA~el---------gvpfi~is~s~------~~~~~--vG~~-------------- 409 (816)
|.....-++++|+||+|||.|+..+|-.+ +-++++++... +.+.. .+..
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~ 198 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAY 198 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecC
Confidence 34445558899999999999999887432 12566776554 11110 0100
Q ss_pred -hHHHHHHH----HHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcC
Q 003476 410 -ASRVRDLF----ARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (816)
Q Consensus 410 -~~~vr~lF----~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN 479 (816)
...+..++ .......+.+|+||-|-++.+..-.+ .+.-..+.+.+.+++..|..+....++.||.+..
T Consensus 199 ~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~--~g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTNq 271 (342)
T PLN03186 199 NTDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSG--RGELSARQMHLGKFLRSLQRLADEFGVAVVITNQ 271 (342)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 01111122 22344568899999999887532110 1112344455777777666555455666665543
No 457
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.18 E-value=0.026 Score=55.24 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=18.4
Q ss_pred CeEEEEcCCCCcHHH-HHHHHHHhc
Q 003476 366 RGVLLVGLPGTGKTL-LAKAVAGEA 389 (816)
Q Consensus 366 kGVLL~GPPGTGKT~-LAkALA~el 389 (816)
+.+++.||+|+|||. ++..+....
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 569999999999999 555554443
No 458
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.18 E-value=0.031 Score=63.18 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003476 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (816)
Q Consensus 367 GVLL~GPPGTGKT~LAkALA~el 389 (816)
-+||+||||||||+|++.+|+.+
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 37999999999999999998866
No 459
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.18 E-value=0.011 Score=59.64 Aligned_cols=27 Identities=33% Similarity=0.508 Sum_probs=22.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 003476 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (816)
Q Consensus 363 ~~pkGVLL~GPPGTGKT~LAkALA~el 389 (816)
.+..-+.|.||+|+|||+|++++++..
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344458899999999999999999864
No 460
>PRK01184 hypothetical protein; Provisional
Probab=96.17 E-value=0.0044 Score=62.42 Aligned_cols=29 Identities=34% Similarity=0.636 Sum_probs=25.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEe
Q 003476 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (816)
Q Consensus 367 GVLL~GPPGTGKT~LAkALA~elgvpfi~i 396 (816)
-|+|+||||+|||++++ ++.+.|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 48899999999999998 789999888665
No 461
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.16 E-value=0.009 Score=60.22 Aligned_cols=73 Identities=25% Similarity=0.363 Sum_probs=41.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc-------------CCcEEEeechhh----HHH---------------Hhh-------
Q 003476 367 GVLLVGLPGTGKTLLAKAVAGEA-------------EVPFISCSASEF----VEL---------------YVG------- 407 (816)
Q Consensus 367 GVLL~GPPGTGKT~LAkALA~el-------------gvpfi~is~s~~----~~~---------------~vG------- 407 (816)
-++|+||||+|||+++-.+|..+ +.++++++...- ... +..
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 113 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGCI 113 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-EE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccccccc
Confidence 38899999999999999987643 235666654321 111 100
Q ss_pred ----------cchHHHHHHHHHHHh-cCCEEEEEcCccchhhc
Q 003476 408 ----------MGASRVRDLFARAKK-EAPSIIFIDEIDAVAKS 439 (816)
Q Consensus 408 ----------~~~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~ 439 (816)
.....+..+.+.+.. ..|.+|+||-+..+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 114 RLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp ---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred eeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 001223445555666 56889999999998754
No 462
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.14 E-value=0.019 Score=57.95 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=27.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 003476 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (816)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~ 404 (816)
|.|+|+||+|||++++.++. +|++++.+ .++...
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~--D~~~~~ 35 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDA--DKIAHE 35 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEec--CHHHHh
Confidence 68999999999999999999 78877654 455443
No 463
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.13 E-value=0.011 Score=68.42 Aligned_cols=95 Identities=20% Similarity=0.257 Sum_probs=60.1
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCe-EEEEcCCCCcHHHHHHHHHHhcCCcEE-EeechhhHHH
Q 003476 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRG-VLLVGLPGTGKTLLAKAVAGEAEVPFI-SCSASEFVEL 404 (816)
Q Consensus 327 ~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkG-VLL~GPPGTGKT~LAkALA~elgvpfi-~is~s~~~~~ 404 (816)
...+|+++.......+.+.+++ ..|.| +|++||.|+|||+...++.++++-+.. .++..+=++.
T Consensus 233 ~~l~l~~Lg~~~~~~~~~~~~~--------------~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~ 298 (500)
T COG2804 233 VILDLEKLGMSPFQLARLLRLL--------------NRPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEY 298 (500)
T ss_pred ccCCHHHhCCCHHHHHHHHHHH--------------hCCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeee
Confidence 3567888887777766666654 34666 556799999999999999998865544 2222222221
Q ss_pred H--------hhc-chHHHHHHHHHHHhcCCEEEEEcCccc
Q 003476 405 Y--------VGM-GASRVRDLFARAKKEAPSIIFIDEIDA 435 (816)
Q Consensus 405 ~--------vG~-~~~~vr~lF~~A~~~aP~ILfIDEIDa 435 (816)
. +.. ..-.....++....+.|+||+|.||-.
T Consensus 299 ~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD 338 (500)
T COG2804 299 QLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRD 338 (500)
T ss_pred ecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccCC
Confidence 0 000 001123445555667899999999954
No 464
>PRK04182 cytidylate kinase; Provisional
Probab=96.13 E-value=0.0051 Score=61.05 Aligned_cols=29 Identities=31% Similarity=0.516 Sum_probs=26.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEE
Q 003476 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (816)
Q Consensus 367 GVLL~GPPGTGKT~LAkALA~elgvpfi~ 395 (816)
-|+|.|+||+|||++++.||..+|.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 37899999999999999999999999875
No 465
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.10 E-value=0.0041 Score=57.80 Aligned_cols=22 Identities=41% Similarity=0.721 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 003476 368 VLLVGLPGTGKTLLAKAVAGEA 389 (816)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~el 389 (816)
|+|.|+||+|||++|+.|+.++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999997
No 466
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.10 E-value=0.0097 Score=63.97 Aligned_cols=116 Identities=20% Similarity=0.212 Sum_probs=64.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCC---------cEEEeechh-h--------HHHHhhcc--------------h----H
Q 003476 368 VLLVGLPGTGKTLLAKAVAGEAEV---------PFISCSASE-F--------VELYVGMG--------------A----S 411 (816)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgv---------pfi~is~s~-~--------~~~~vG~~--------------~----~ 411 (816)
.=|+||||+|||.|+-.+|-.+.+ ..++++... | .+.|--.. . .
T Consensus 41 tEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~~~l~~ 120 (256)
T PF08423_consen 41 TEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFDLEELLE 120 (256)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSHHHHHH
T ss_pred EEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCCHHHHHH
Confidence 449999999999999988865432 366665432 1 11110000 0 1
Q ss_pred HHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCC
Q 003476 412 RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 485 (816)
Q Consensus 412 ~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LD 485 (816)
.+..+..........+|+||-|-++.+..-.+ .....++.+.+..++..|..+....++-||.|..-....+
T Consensus 121 ~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~--~~~~~~R~~~L~~~~~~L~~lA~~~~iaVvvTNqv~~~~~ 192 (256)
T PF08423_consen 121 LLEQLPKLLSESKIKLIVIDSIAALFRSEFSG--RGDLAERQRMLARLARILKRLARKYNIAVVVTNQVTTKID 192 (256)
T ss_dssp HHHHHHHHHHHSCEEEEEEETSSHHHHHHSGS--TTTHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEECSSTT
T ss_pred HHHHHHhhccccceEEEEecchHHHHHHHHcc--chhhHHHHHHHHHHHHHHHHHHHhCCceEEeeceeeecCC
Confidence 11112222233456799999999988643211 1123456677777776666555556667765544333343
No 467
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.09 E-value=0.014 Score=60.01 Aligned_cols=42 Identities=29% Similarity=0.511 Sum_probs=32.9
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc-CCcEEEeechhhHHH
Q 003476 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA-EVPFISCSASEFVEL 404 (816)
Q Consensus 363 ~~pkGVLL~GPPGTGKT~LAkALA~el-gvpfi~is~s~~~~~ 404 (816)
..|.-+++.|+||+|||+++..+..++ +-.++.++..++...
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 568889999999999999999999988 778888888877653
No 468
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.09 E-value=0.022 Score=64.19 Aligned_cols=69 Identities=23% Similarity=0.285 Sum_probs=42.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcC------CcEEEeec-hhhHH------------HHhhcchHHHHHHHHHHHhcCCE
Q 003476 366 RGVLLVGLPGTGKTLLAKAVAGEAE------VPFISCSA-SEFVE------------LYVGMGASRVRDLFARAKKEAPS 426 (816)
Q Consensus 366 kGVLL~GPPGTGKT~LAkALA~elg------vpfi~is~-s~~~~------------~~vG~~~~~vr~lF~~A~~~aP~ 426 (816)
..++++||+|+|||+++++++++.. ..++.+.- .++.- .-++.........++.+....|.
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~Pd 214 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRKPH 214 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccCCC
Confidence 3489999999999999999998752 22333211 01100 00111112345566667778999
Q ss_pred EEEEcCcc
Q 003476 427 IIFIDEID 434 (816)
Q Consensus 427 ILfIDEID 434 (816)
++++.|+.
T Consensus 215 ~i~vGEiR 222 (358)
T TIGR02524 215 AILVGEAR 222 (358)
T ss_pred EEeeeeeC
Confidence 99999974
No 469
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.08 E-value=0.0041 Score=60.78 Aligned_cols=35 Identities=26% Similarity=0.399 Sum_probs=28.2
Q ss_pred EEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHHh
Q 003476 370 LVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (816)
Q Consensus 370 L~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~~v 406 (816)
|.||||+|||++|+.||.+.|++ .++..+++....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~--~is~~~llr~~~ 35 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLV--HISVGDLLREEI 35 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSE--EEEHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcc--eechHHHHHHHH
Confidence 68999999999999999999765 556666665443
No 470
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.08 E-value=0.038 Score=56.99 Aligned_cols=27 Identities=33% Similarity=0.513 Sum_probs=23.0
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 003476 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (816)
Q Consensus 363 ~~pkGVLL~GPPGTGKT~LAkALA~el 389 (816)
.+..-+.|.||+|+|||+|++.+++..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345568999999999999999999864
No 471
>PLN02674 adenylate kinase
Probab=96.07 E-value=0.0076 Score=64.45 Aligned_cols=40 Identities=20% Similarity=0.488 Sum_probs=31.9
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 003476 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (816)
Q Consensus 363 ~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~ 404 (816)
.++..++|.||||+|||++|+.||...+++.+ +..+++..
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~hi--s~GdllR~ 68 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHL--ATGDMLRA 68 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEE--chhHHHHH
Confidence 44567999999999999999999999987655 45555543
No 472
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.07 E-value=0.12 Score=56.24 Aligned_cols=38 Identities=24% Similarity=0.395 Sum_probs=28.5
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeech
Q 003476 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (816)
Q Consensus 362 ~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s 399 (816)
...|+-++|+||+|+|||+++..+|..+ |..+..+++.
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3457789999999999999999998755 5455445443
No 473
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.06 E-value=0.037 Score=57.01 Aligned_cols=36 Identities=19% Similarity=0.334 Sum_probs=29.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 003476 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (816)
Q Consensus 367 GVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~ 404 (816)
-+.|+|++|+|||++++.++..+|++++. +.++...
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~--~D~~~~~ 38 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILD--ADIYARE 38 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEee--CcHHHHH
Confidence 37899999999999999999988988874 5555543
No 474
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.06 E-value=0.02 Score=67.32 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=23.9
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 003476 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (816)
Q Consensus 362 ~~~pkGVLL~GPPGTGKT~LAkALA~el 389 (816)
.++..-+.|+||+|+|||+|++.+++..
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455569999999999999999999865
No 475
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.06 E-value=0.013 Score=68.59 Aligned_cols=95 Identities=19% Similarity=0.275 Sum_probs=59.0
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCe-EEEEcCCCCcHHHHHHHHHHhcC---CcEEEeech-hh
Q 003476 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRG-VLLVGLPGTGKTLLAKAVAGEAE---VPFISCSAS-EF 401 (816)
Q Consensus 327 ~~vtf~DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkG-VLL~GPPGTGKT~LAkALA~elg---vpfi~is~s-~~ 401 (816)
...+++++.-.++..+.+++++. .+.| +|++||+|+|||++.+++..++. ..++++.-. ++
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~--------------~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIR--------------RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHh--------------cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 34578887666666666655442 2445 68999999999999998877764 334444221 11
Q ss_pred HHH-----Hhhc-chHHHHHHHHHHHhcCCEEEEEcCccc
Q 003476 402 VEL-----YVGM-GASRVRDLFARAKKEAPSIIFIDEIDA 435 (816)
Q Consensus 402 ~~~-----~vG~-~~~~vr~lF~~A~~~aP~ILfIDEIDa 435 (816)
.-. .+.. ......+++..+....|+||+|.||..
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 100 0111 012344566667778999999999843
No 476
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=96.04 E-value=0.016 Score=70.55 Aligned_cols=28 Identities=32% Similarity=0.472 Sum_probs=24.1
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 003476 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (816)
Q Consensus 362 ~~~pkGVLL~GPPGTGKT~LAkALA~el 389 (816)
.++...+.|+||+|+|||+|++.+++..
T Consensus 476 i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 503 (686)
T TIGR03797 476 IEPGEFVAIVGPSGSGKSTLLRLLLGFE 503 (686)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455669999999999999999999854
No 477
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.02 E-value=0.025 Score=56.61 Aligned_cols=40 Identities=28% Similarity=0.352 Sum_probs=30.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH
Q 003476 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (816)
Q Consensus 364 ~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s~~~~ 403 (816)
.+.-+.|.|+||+|||++|++++..+ +..+..++...+..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~ 45 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRT 45 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHH
Confidence 34568999999999999999999886 44556666654433
No 478
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.02 E-value=0.033 Score=58.29 Aligned_cols=125 Identities=25% Similarity=0.310 Sum_probs=72.8
Q ss_pred ChhHHhhhCCCCCCe--EEEEcCCCCcHHHHHHHHHHhc---CCcEEEeech----hhHH-----------H--------
Q 003476 353 SPDKYIRLGARPPRG--VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS----EFVE-----------L-------- 404 (816)
Q Consensus 353 ~p~~~~~lg~~~pkG--VLL~GPPGTGKT~LAkALA~el---gvpfi~is~s----~~~~-----------~-------- 404 (816)
+.+.-+++|.-.|-| +|+.|+.|||||.|.+.++--+ +....+++.. +|.. .
T Consensus 14 ndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~ 93 (235)
T COG2874 14 NDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLF 93 (235)
T ss_pred cHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEE
Confidence 344455777766666 7888999999999999997522 3333333211 1111 0
Q ss_pred ------H----hhcchHHHHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEE
Q 003476 405 ------Y----VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (816)
Q Consensus 405 ------~----vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViV 474 (816)
. .....+.+..+.+..+.....||+||-+..+.... .++.++++++.+..+....++|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~-----------~~~~vl~fm~~~r~l~d~gKvIi 162 (235)
T COG2874 94 FPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD-----------SEDAVLNFMTFLRKLSDLGKVII 162 (235)
T ss_pred EEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc-----------cHHHHHHHHHHHHHHHhCCCEEE
Confidence 0 01122334444454555556799999998876321 12345556666655655566555
Q ss_pred EEEcCCCCCCCcccCC
Q 003476 475 LGATNRSDVLDPALRR 490 (816)
Q Consensus 475 IaATN~pd~LDpALlR 490 (816)
+ |-+|+.++.+++-
T Consensus 163 l--Tvhp~~l~e~~~~ 176 (235)
T COG2874 163 L--TVHPSALDEDVLT 176 (235)
T ss_pred E--EeChhhcCHHHHH
Confidence 4 4457788877754
No 479
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.02 E-value=0.037 Score=57.07 Aligned_cols=57 Identities=23% Similarity=0.276 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCC
Q 003476 413 VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL 484 (816)
Q Consensus 413 vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~L 484 (816)
-|-.+..|--+.|.+|+-||=- +..++....-+..|+.++. .-+.-|+.||...+.+
T Consensus 144 QRvaIARAiV~~P~vLlADEPT-----------GNLDp~~s~~im~lfeein----r~GtTVl~ATHd~~lv 200 (223)
T COG2884 144 QRVAIARAIVNQPAVLLADEPT-----------GNLDPDLSWEIMRLFEEIN----RLGTTVLMATHDLELV 200 (223)
T ss_pred HHHHHHHHHccCCCeEeecCCC-----------CCCChHHHHHHHHHHHHHh----hcCcEEEEEeccHHHH
Confidence 3445566667889999999931 1234455555667777776 3455677777654433
No 480
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.01 E-value=0.018 Score=68.41 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=23.8
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 003476 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (816)
Q Consensus 362 ~~~pkGVLL~GPPGTGKT~LAkALA~el 389 (816)
.++..-+.|+||+|+|||+|++.+++..
T Consensus 366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3445559999999999999999999964
No 481
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.00 E-value=0.028 Score=59.45 Aligned_cols=68 Identities=25% Similarity=0.325 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCEEEEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCC
Q 003476 413 VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPG 492 (816)
Q Consensus 413 vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpG 492 (816)
-|-.+..|-.+.|.||+-||=- +..+.+....+-.++.++. ...+..||..|..+ .+..
T Consensus 149 QRVAIARAL~~~P~iilADEPT-----------gnLD~~t~~~V~~ll~~~~---~~~g~tii~VTHd~-----~lA~-- 207 (226)
T COG1136 149 QRVAIARALINNPKIILADEPT-----------GNLDSKTAKEVLELLRELN---KERGKTIIMVTHDP-----ELAK-- 207 (226)
T ss_pred HHHHHHHHHhcCCCeEEeeCcc-----------ccCChHHHHHHHHHHHHHH---HhcCCEEEEEcCCH-----HHHH--
Confidence 3445556666789999999931 1234444555566666653 22345666677744 3443
Q ss_pred cccceEEec
Q 003476 493 RFDRVVMVE 501 (816)
Q Consensus 493 RFdr~I~v~ 501 (816)
+.||.|.+.
T Consensus 208 ~~dr~i~l~ 216 (226)
T COG1136 208 YADRVIELK 216 (226)
T ss_pred hCCEEEEEe
Confidence 667777664
No 482
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=96.00 E-value=0.016 Score=70.48 Aligned_cols=28 Identities=36% Similarity=0.527 Sum_probs=23.7
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 003476 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (816)
Q Consensus 362 ~~~pkGVLL~GPPGTGKT~LAkALA~el 389 (816)
.++...+.|+||+|+|||+|++.+++..
T Consensus 488 i~~G~~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 488 IRPGEKVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445569999999999999999999854
No 483
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.00 E-value=0.0063 Score=59.96 Aligned_cols=29 Identities=38% Similarity=0.629 Sum_probs=26.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEe
Q 003476 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (816)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgvpfi~i 396 (816)
|.|+|++|+|||++|+.+|..++.+++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 78999999999999999999999997653
No 484
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=95.99 E-value=0.014 Score=71.29 Aligned_cols=28 Identities=46% Similarity=0.616 Sum_probs=23.7
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 003476 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (816)
Q Consensus 362 ~~~pkGVLL~GPPGTGKT~LAkALA~el 389 (816)
.++...+.++||+|+|||+|++.+++..
T Consensus 502 i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 502 LQPGQRVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445569999999999999999999854
No 485
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=95.98 E-value=0.033 Score=56.53 Aligned_cols=36 Identities=28% Similarity=0.391 Sum_probs=28.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHH
Q 003476 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (816)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~~ 405 (816)
|.|+|.+|+|||++++.++...+++++. +.++....
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i~--~D~~~~~~ 37 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVID--ADKIAHQV 37 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEEe--CCHHHHHH
Confidence 6899999999999999999987777754 45555433
No 486
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.96 E-value=0.025 Score=69.30 Aligned_cols=97 Identities=22% Similarity=0.334 Sum_probs=56.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh---cC--CcEEEeechh----hHHHHhhcchHHHHHHHHHHH----------hcCCEE
Q 003476 367 GVLLVGLPGTGKTLLAKAVAGE---AE--VPFISCSASE----FVELYVGMGASRVRDLFARAK----------KEAPSI 427 (816)
Q Consensus 367 GVLL~GPPGTGKT~LAkALA~e---lg--vpfi~is~s~----~~~~~vG~~~~~vr~lF~~A~----------~~aP~I 427 (816)
-++|.|+||||||++++++... .+ .+++.+..+. -+....|..+..+..++.... .....+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 5899999999999999998654 34 4555443221 111122333344444443211 123469
Q ss_pred EEEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCC
Q 003476 428 IFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (816)
Q Consensus 428 LfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~p 481 (816)
|+|||+..+.. ..+..|+..+ .....+++++=.+..
T Consensus 420 lIvDEaSMvd~---------------~~~~~Ll~~~---~~~~rlilvGD~~QL 455 (720)
T TIGR01448 420 LIVDESSMMDT---------------WLALSLLAAL---PDHARLLLVGDTDQL 455 (720)
T ss_pred EEEeccccCCH---------------HHHHHHHHhC---CCCCEEEEECccccc
Confidence 99999877631 2445666544 344567877766543
No 487
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.95 E-value=0.011 Score=57.64 Aligned_cols=29 Identities=31% Similarity=0.290 Sum_probs=25.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcCCc
Q 003476 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVP 392 (816)
Q Consensus 364 ~pkGVLL~GPPGTGKT~LAkALA~elgvp 392 (816)
+..-++|.|+.|+|||+|+|.+++.++++
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 34468999999999999999999999864
No 488
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=95.95 E-value=0.18 Score=54.05 Aligned_cols=147 Identities=13% Similarity=0.072 Sum_probs=96.8
Q ss_pred CCCeEEEEcCCC-CcHHHHHHHHHHhcCC---------cEEEeechhhHHH-HhhcchHHHHHHHHHHHh----cCCEEE
Q 003476 364 PPRGVLLVGLPG-TGKTLLAKAVAGEAEV---------PFISCSASEFVEL-YVGMGASRVRDLFARAKK----EAPSII 428 (816)
Q Consensus 364 ~pkGVLL~GPPG-TGKT~LAkALA~elgv---------pfi~is~s~~~~~-~vG~~~~~vr~lF~~A~~----~aP~IL 428 (816)
.....||.|..+ ++|..++.-++..+.+ .+..+....-... --.-+...+|++.+.+.. ....|+
T Consensus 14 LshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KVi 93 (263)
T PRK06581 14 LYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVA 93 (263)
T ss_pred chheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEE
Confidence 445689999998 9999998888776532 1222221100000 001234567776665542 234599
Q ss_pred EEcCccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcccceEEecCCCHHHH
Q 003476 429 FIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGR 508 (816)
Q Consensus 429 fIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emDg~~~~~~ViVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR 508 (816)
+||++|.+.. +..|.||..++ ++..++++|..|+.++.|.|.+++ |. ..+.++.|+...-
T Consensus 94 II~~ae~mt~---------------~AANALLKtLE--EPP~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p~~~~~ 153 (263)
T PRK06581 94 IIYSAELMNL---------------NAANSCLKILE--DAPKNSYIFLITSRAASIISTIRS--RC-FKINVRSSILHAY 153 (263)
T ss_pred EEechHHhCH---------------HHHHHHHHhhc--CCCCCeEEEEEeCChhhCchhHhh--ce-EEEeCCCCCHHHH
Confidence 9999999853 45689999998 456778888888889999999988 53 4889999998777
Q ss_pred HHHHHHHHhcCCCCCccccCHHHHHh
Q 003476 509 EAILKVHVSKKELPLAKDIDLGDIAS 534 (816)
Q Consensus 509 ~~ILk~~l~~~~l~l~~dvdl~~LA~ 534 (816)
.++....+. |..++..++-|.+
T Consensus 154 ~e~~~~~~~----p~~~~~~l~~i~~ 175 (263)
T PRK06581 154 NELYSQFIQ----PIADNKTLDFINR 175 (263)
T ss_pred HHHHHHhcc----cccccHHHHHHHH
Confidence 777666653 3333433444444
No 489
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.94 E-value=0.034 Score=58.40 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH
Q 003476 365 PRGVLLVGLPGTGKTLLAKAVAG 387 (816)
Q Consensus 365 pkGVLL~GPPGTGKT~LAkALA~ 387 (816)
..-+.++||+|+|||+|.|++..
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 34489999999999999999976
No 490
>PF13245 AAA_19: Part of AAA domain
Probab=95.94 E-value=0.01 Score=52.17 Aligned_cols=31 Identities=32% Similarity=0.417 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHH-HHHHHHHHhc------CCcEEEeec
Q 003476 368 VLLVGLPGTGKT-LLAKAVAGEA------EVPFISCSA 398 (816)
Q Consensus 368 VLL~GPPGTGKT-~LAkALA~el------gvpfi~is~ 398 (816)
+++.|||||||| ++++.++... +-.++.++.
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 556999999999 6666666554 445555544
No 491
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.93 E-value=0.037 Score=58.41 Aligned_cols=24 Identities=21% Similarity=0.116 Sum_probs=21.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHH
Q 003476 364 PPRGVLLVGLPGTGKTLLAKAVAG 387 (816)
Q Consensus 364 ~pkGVLL~GPPGTGKT~LAkALA~ 387 (816)
...-++|.||.|+|||++.+.++.
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 344589999999999999999987
No 492
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.91 E-value=0.0063 Score=63.44 Aligned_cols=23 Identities=52% Similarity=0.531 Sum_probs=18.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003476 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (816)
Q Consensus 367 GVLL~GPPGTGKT~LAkALA~el 389 (816)
-+.+.||+|||||+||-+.|-++
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 48999999999999999998754
No 493
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.91 E-value=0.035 Score=62.59 Aligned_cols=53 Identities=19% Similarity=0.375 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeech
Q 003476 338 DEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (816)
Q Consensus 338 ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~el---gvpfi~is~s 399 (816)
++.++.+..+++.+.. ..|..+++.||.|||||++.+++...+ +..++.+...
T Consensus 4 ~eQ~~~~~~v~~~~~~---------~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~t 59 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIEN---------EEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPT 59 (364)
T ss_pred HHHHHHHHHHHHHHHc---------cCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecch
Confidence 3444555555444332 456789999999999999999998766 3345444433
No 494
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=95.91 E-value=0.0088 Score=66.95 Aligned_cols=70 Identities=27% Similarity=0.368 Sum_probs=47.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCC--cEEEeec-hhhH-------HHH------hhcchHHHHHHHHHHHhcCCEEE
Q 003476 365 PRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSA-SEFV-------ELY------VGMGASRVRDLFARAKKEAPSII 428 (816)
Q Consensus 365 pkGVLL~GPPGTGKT~LAkALA~elgv--pfi~is~-s~~~-------~~~------vG~~~~~vr~lF~~A~~~aP~IL 428 (816)
..++++.|++|+|||++++++.+...- ..+.+.. .++. ... .|.+.-.+.++++.+..+.|+.|
T Consensus 178 ~~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~~El~~~~~~~~~l~~r~~~~~g~~~~t~~~ll~~aLR~~PD~I 257 (340)
T TIGR03819 178 RLAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDAAELRPDHPHVVRLEARPANVEGAGAVTLTDLVRQALRMRPDRI 257 (340)
T ss_pred CCeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCcceecCCCCCeeeEEeccccccCcCccCHHHHHHHHhccCCCeE
Confidence 467999999999999999999987531 1222211 1111 000 12223456788899999999999
Q ss_pred EEcCcc
Q 003476 429 FIDEID 434 (816)
Q Consensus 429 fIDEID 434 (816)
++.|+-
T Consensus 258 ivGEiR 263 (340)
T TIGR03819 258 VVGEVR 263 (340)
T ss_pred EEeCcC
Confidence 999984
No 495
>PRK08233 hypothetical protein; Provisional
Probab=95.91 E-value=0.0082 Score=59.75 Aligned_cols=33 Identities=15% Similarity=0.260 Sum_probs=26.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcC-CcEEEeec
Q 003476 366 RGVLLVGLPGTGKTLLAKAVAGEAE-VPFISCSA 398 (816)
Q Consensus 366 kGVLL~GPPGTGKT~LAkALA~elg-vpfi~is~ 398 (816)
.-|.+.|+||+|||++|+.|+..++ .+++..+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 3477889999999999999999985 45554443
No 496
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.88 E-value=0.0088 Score=51.22 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 003476 368 VLLVGLPGTGKTLLAKAVAGEA 389 (816)
Q Consensus 368 VLL~GPPGTGKT~LAkALA~el 389 (816)
+.+.|+||+|||+++++++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999985
No 497
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.88 E-value=0.0082 Score=67.28 Aligned_cols=25 Identities=44% Similarity=0.699 Sum_probs=21.4
Q ss_pred CCCCe--EEEEcCCCCcHHHHHHHHHH
Q 003476 363 RPPRG--VLLVGLPGTGKTLLAKAVAG 387 (816)
Q Consensus 363 ~~pkG--VLL~GPPGTGKT~LAkALA~ 387 (816)
...+| +-|.||+||||||+.|.||+
T Consensus 27 ~i~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 27 DIKKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred eecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 34444 77999999999999999998
No 498
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.87 E-value=0.026 Score=61.21 Aligned_cols=170 Identities=17% Similarity=0.215 Sum_probs=92.7
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHHhhcchHH
Q 003476 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASR 412 (816)
Q Consensus 333 DV~G~ee~K~~L~eiV~~Lk~p~~~~~lg~~~pkGVLL~GPPGTGKT~LAkALA~elgvpfi~is~s~~~~~~vG~~~~~ 412 (816)
|++-.+++.+.+..+..-|..|. .++||+|.+|+||++++|-.|.-++..++.+..+.-.+ ..+-...
T Consensus 9 ~lVlf~~ai~hi~ri~RvL~~~~----------Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~--~~~f~~d 76 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVLSQPR----------GHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS--IKDFKED 76 (268)
T ss_dssp -----HHHHHHHHHHHHHHCSTT----------EEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH--HHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHHHcCCC----------CCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC--HHHHHHH
Confidence 56677888888888877776642 35999999999999999999999999999887543211 1112345
Q ss_pred HHHHHHHHH-hcCCEEEEEcCccch-----------hhccCCccccccchHHHHHHHHHHhhcc--CCCC----------
Q 003476 413 VRDLFARAK-KEAPSIIFIDEIDAV-----------AKSRDGRFRIVSNDEREQTLNQLLTEMD--GFDS---------- 468 (816)
Q Consensus 413 vr~lF~~A~-~~aP~ILfIDEIDaL-----------~~~r~~~~~~~~~~e~~~~Ln~LL~emD--g~~~---------- 468 (816)
++.++.+|. +..|.+++|+|-+-. ... +.-..--..+|.+.++..+-..+. +...
T Consensus 77 Lk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~s-Geip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F~ 155 (268)
T PF12780_consen 77 LKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSS-GEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFFI 155 (268)
T ss_dssp HHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHC-SS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHHH
T ss_pred HHHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhC-CCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHHH
Confidence 666666665 456888888874321 111 000011234555666555544332 1110
Q ss_pred ---CCcEEEEEEcC-CCCCC------CcccCCCCcccceEEecCCCHHHHHHHHHHHHhc
Q 003476 469 ---NSAVIVLGATN-RSDVL------DPALRRPGRFDRVVMVETPDKIGREAILKVHVSK 518 (816)
Q Consensus 469 ---~~~ViVIaATN-~pd~L------DpALlRpGRFdr~I~v~~Pd~~eR~~ILk~~l~~ 518 (816)
+.+.-||.+.+ ..+.+ -|+|.. ......+...+.+....+-..++.+
T Consensus 156 ~rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~---~ctIdW~~~W~~eaL~~Va~~~l~~ 212 (268)
T PF12780_consen 156 ERVRKNLHIVLCMSPVGPNFRDRCRSFPALVN---CCTIDWFDPWPEEALLSVANKFLSD 212 (268)
T ss_dssp HHHCCCEEEEEEESTTTTCCCHHHHHHCCHHH---HSEEEEEES--HHHHHHHHHHHCCH
T ss_pred HHHHhheeEEEEECCCCchHHHHHHhCcchhc---ccEEEeCCcCCHHHHHHHHHHHHHh
Confidence 12332222222 22222 255553 2335567777778888888777754
No 499
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.86 E-value=0.088 Score=65.04 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 003476 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (816)
Q Consensus 366 kGVLL~GPPGTGKT~LAkALA~e 388 (816)
..++|+||.|+|||++.|.++..
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 56999999999999999999875
No 500
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.85 E-value=0.03 Score=57.49 Aligned_cols=27 Identities=33% Similarity=0.498 Sum_probs=23.6
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHh
Q 003476 362 ARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (816)
Q Consensus 362 ~~~pkGVLL~GPPGTGKT~LAkALA~e 388 (816)
..+...+.|.||+|+|||+|.+.+++.
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 23 IKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 345566999999999999999999997
Done!