Query 003476
Match_columns 816
No_of_seqs 526 out of 4076
Neff 6.0
Searched_HMMs 29240
Date Tue Mar 26 18:12:30 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003476.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1525-1529//hhsearch_pdb/003476hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ce7_A Cell division protein F 1.0 1 1 688.4 41.0 447 326-783 10-458 (476)
2 2dhr_A FTSH; AAA+ protein, hex 1.0 1 1 669.9 39.1 468 314-798 14-482 (499)
3 4b4t_J 26S protease regulatory 1.0 1 1 436.7 28.6 256 321-579 137-393 (405)
4 4b4t_H 26S protease regulatory 1.0 1 1 431.2 26.2 258 323-583 200-458 (467)
5 4b4t_I 26S protease regulatory 1.0 1 1 429.0 26.5 255 322-579 172-427 (437)
6 4b4t_M 26S protease regulatory 1.0 1 1 423.8 26.0 253 322-577 171-424 (434)
7 4b4t_L 26S protease subunit RP 1.0 1 1 422.3 27.3 253 322-577 171-424 (437)
8 3cf2_A TER ATPase, transitiona 1.0 1 1 419.9 11.0 246 325-576 197-460 (806)
9 4b4t_K 26S protease regulatory 1.0 1 1 416.0 26.1 252 323-577 163-416 (428)
10 3cf2_A TER ATPase, transitiona 1.0 1 1 380.2 21.0 315 242-559 342-702 (806)
No 1
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=1.00 E-value=1 Score=688.38 Aligned_cols=447 Identities=49% Similarity=0.789 Sum_probs=409.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECHHHHHHH
Q ss_conf 88633344458758799999999982292588661899998189993899908999999998339968995211368887
Q 003476 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (816)
Q Consensus 326 ~~~vtf~DI~G~eevK~~L~eiV~~lk~p~~~~~lg~~~pkgvLL~GPPGTGKT~LAkAIA~elg~pfi~is~sel~~~~ 405 (816)
.+.++|+||+|++++|+++++++.+++++..|..+|.++|+|+||+||||||||++|+++|+++++||+.++++++.+.+
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCCHHHHCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHH
T ss_conf 89999888188499999999999984072877643788897389988999888999999999819986607899999997
Q ss_pred HHCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 30215789999999973299799983764022104875443460689999999985005999999589999849999999
Q 003476 406 VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 485 (816)
Q Consensus 406 vG~~~~~ir~lF~~Ar~~aP~IIfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~eldg~~~~~~VIVIaATN~pd~LD 485 (816)
+|.+..+++.+|..|+..+||||||||||.++.+++... .+.+++..+++++|+.+|+++..+.+++||++||+++.+|
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~-~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL-GGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC----------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHCCCCC-CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHC
T ss_conf 341088999999999845997899856665421004666-7676889999999999975337888889999568756636
Q ss_pred CCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 22379996440578117999999999999871389898533677788862789999999999999999998707930139
Q 003476 486 PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEK 565 (816)
Q Consensus 486 pALlRpGRFdr~I~i~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAal~A~r~~~~~It~ 565 (816)
++++|||||++.|.+++|+.++|.+|++.++++. ++.+++++..++..+.||+|+||.++|++|++.|.+++...|+.
T Consensus 169 ~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~--~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~ 246 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNK--PLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITM 246 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS--CBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCH
T ss_pred HHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEECH
T ss_conf 3312267530686158999899999999999727--88605549999875579839999999999999999748982339
Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHCCCCEEEHHHHHHCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCHH
Q ss_conf 88999999987040223332026302578763101000002354208999853112111578754203970588664215
Q 003476 566 IDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLL 645 (816)
Q Consensus 566 ~di~~Al~r~i~g~~~k~~~ls~~ek~~iA~hEaGHAvv~~~l~~~l~~~~~v~kvsi~pr~g~~lG~~~~~~~e~~~~~ 645 (816)
+||..|+++++.+.+++...+++.+++.++|||+|||++++ .+|+.+++++++|+||+.+++||+++.|.+|++++
T Consensus 247 ~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~a~~~~----~l~~~~~~~~~~i~prg~~alg~~~~~p~~~~~~~ 322 (476)
T 2ce7_A 247 KDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVST----VVPNGEPVHRISIIPRGYKALGYTLHLPEEDKYLV 322 (476)
T ss_dssp HHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHH----HSTTCCCCCEEECC-----------------CCSC
T ss_pred HHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHH----CCCCCCCCCEEEEECCCCCCCCEEEECCCCCCCCC
T ss_conf 99999999985574434303210010463799862478763----14776543504660574200412787673112326
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCC-CCCCC-CCCCCCC
Q ss_conf 799999789985457999998709976787003899999999999998236678885100145789-98899-9997789
Q 003476 646 FIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSG-GIDES-GGGVPWG 723 (816)
Q Consensus 646 t~~~l~~~I~vlLgGRaAEeivfg~~~stGA~~DL~~AT~lA~~MV~~~GMs~~lG~i~~~~~~~~-~~~~~-~~~~~~~ 723 (816)
++.+|+++|+++|||||||+++| |++||||+|||++||++|+.||++||||+++||+++...... .+... ....++
T Consensus 323 ~~~~l~~~i~~~l~Gr~ae~~~~-g~~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~- 400 (476)
T 2ce7_A 323 SRNELLDKLTALLGGRAAEEVVF-GDVTSGAANDIERATEIARNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLRNY- 400 (476)
T ss_dssp BHHHHHHHHHHHTHHHHHHHHHH-SSCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC-------------CCCS-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCC-
T ss_conf 79999999999875899996023-7977450789999999999999984888768851314777654456543345665-
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 652689999999999999999999999999669999999999998426699999998717
Q 003476 724 RDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGLGACLEEKEKVEGEELQEWLGM 783 (816)
Q Consensus 724 ~~~~~~~~~id~Ev~~il~~a~~~A~~iL~~nr~~Le~lA~~LlekEtL~geei~~il~~ 783 (816)
+..++..||+||++++++||++|++||++|++.|++||++|+|+|||+++||.+|++.
T Consensus 401 --s~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~ 458 (476)
T 2ce7_A 401 --SEEVASKIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRILSE 458 (476)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHHTC-
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHCC
T ss_conf --6778999999999999999999999999969999999999997490589999999645
No 2
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=1.00 E-value=1 Score=669.89 Aligned_cols=468 Identities=44% Similarity=0.686 Sum_probs=413.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCE
Q ss_conf 78999984345788633344458758799999999982292588661899998189993899908999999998339968
Q 003476 314 TRGPGGAKVSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF 393 (816)
Q Consensus 314 ~~~~~~~~~~~~~~~vtf~DI~G~eevK~~L~eiV~~lk~p~~~~~lg~~~pkgvLL~GPPGTGKT~LAkAIA~elg~pf 393 (816)
++++.. ++....+.++|+||+|++++|+++++++.+++++..|..++.++|+|+||+||||||||+||+++|++++.+|
T Consensus 14 ~~~~~~-~~~~~~~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~ 92 (499)
T 2dhr_A 14 FTKSRA-RVLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPF 92 (499)
T ss_dssp ----CC-EEECSCCCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCE
T ss_pred CCCCCC-EEECCCCCCCHHHCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf 566764-3632699999998188399999999999983060655414687886389989999889999999988748987
Q ss_pred EEEECHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf 99521136888730215789999999973299799983764022104875443460689999999985005999999589
Q 003476 394 ISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 473 (816)
Q Consensus 394 i~is~sel~~~~vG~~~~~ir~lF~~Ar~~aP~IIfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~eldg~~~~~~VI 473 (816)
+.++++++.+.++|.+..+++.+|+.++...|||+||||||.++..++... ...+++..+++++++.+|+++.....++
T Consensus 93 i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~-~~~~~e~~~~l~~LL~~Ldg~~~~~~vi 171 (499)
T 2dhr_A 93 ITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGV-GGGNDEREQTLNQLLVEMDGFEKDTAIV 171 (499)
T ss_dssp EEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSST-TTSSHHHHHHHHHHHHHGGGCCSSCCCE
T ss_pred EEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 998336877764215899999999998715998899742988987424676-7874899999999998741466676189
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 99984999999922379996440578117999999999999871389898533677788862789999999999999999
Q 003476 474 VLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAAL 553 (816)
Q Consensus 474 VIaATN~pd~LDpALlRpGRFdr~I~i~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAal 553 (816)
+|++||+|+.||++++|||||++.|.|++|+.++|.+||+.|+++ .++.+++++..++..+.|++|+||+++|++|++
T Consensus 172 viAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~--~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~ 249 (499)
T 2dhr_A 172 VMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG--KPLAEDVDLALLAKRTPGFVGADLENLLNEAAL 249 (499)
T ss_dssp EEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSS--SCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHH
T ss_pred EEEECCCHHHCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 999568845438312556614569852899999999999999826--999768889999986389979999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHCCCCEEEHHHHHHCCCCCCCCEEEECCCCCCCCEE
Q ss_conf 99870793013988999999987040223332026302578763101000002354208999853112111578754203
Q 003476 554 LAGRLNKVVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGF 633 (816)
Q Consensus 554 ~A~r~~~~~It~~di~~Al~r~i~g~~~k~~~ls~~ek~~iA~hEaGHAvv~~~l~~~l~~~~~v~kvsi~pr~g~~lG~ 633 (816)
.|.+++...|+.+||..|+++++.+.++++..+++.+++.++|||+|||+++ +++++.++|++++|+|| ++++||
T Consensus 250 ~A~~~~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~----~~l~~~~~v~~~~i~pr-~~~~g~ 324 (499)
T 2dhr_A 250 LAAREGRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAA----HFLEHADGVHKVTIVPR-GRALGF 324 (499)
T ss_dssp HHTTTCCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHH----CCSSSCCCCCCEESCCS-SCTTCS
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH----HHCCCCCEEEEEEEECC-CCCCCC
T ss_conf 9998289865799999999987236443321124777762189999899998----66578870667874047-776760
Q ss_pred EEECCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCC
Q ss_conf 970588-6642157999997899854579999987099767870038999999999999982366788851001457899
Q 003476 634 TYTPAN-EDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGG 712 (816)
Q Consensus 634 ~~~~~~-e~~~~~t~~~l~~~I~vlLgGRaAEeivfg~~~stGA~~DL~~AT~lA~~MV~~~GMs~~lG~i~~~~~~~~~ 712 (816)
++ |. ++.|++|+.+++++|+++||||+||+++| |++||||+|||++||+||+.||++||||+++||+++....+..
T Consensus 325 ~~--p~q~~~~~~t~~~l~~~i~~~lgGr~ae~~~~-g~~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~ 401 (499)
T 2dhr_A 325 MM--PRREDMLHWSRKRLLDQIAVALAGRAAEEIVF-DDVTTGAENDFRQATELARRMITEWGMHPEFGPVAYAVREDTY 401 (499)
T ss_dssp SH--HHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHS-CSCCBCCCHHHHHHHHHHHHHHTTSCCCSSSCSCCCCCCCCCS
T ss_pred CC--CCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCC
T ss_conf 03--41465430489999999999964376778630-3567660879999999999999983888878843535777643
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCC
Q ss_conf 88999997789652689999999999999999999999999669999999999998426699999998717689843221
Q 003476 713 IDESGGGVPWGRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGLGACLEEKEKVEGEELQEWLGMVVAPIELSN 792 (816)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~id~Ev~~il~~a~~~A~~iL~~nr~~Le~lA~~LlekEtL~geei~~il~~~~~p~~~~~ 792 (816)
+.... ..++ +..++..||+||++++++||++|++||++|++.|++||++|+|+|||+++||.+|++.. .+.....
T Consensus 402 ~~~~~-~~~~---s~~~~~~i~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~~-~~~~~~~ 476 (499)
T 2dhr_A 402 LGGYD-VRQY---SEETAKRIDEAVRRLIEEQYQRVKALLLEKREVLERVAETLLERETLTAEEFQRVVEGL-PLEAPEE 476 (499)
T ss_dssp SCCCC-CCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHTTC-CCCCCC-
T ss_pred CCCCC-CCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHCCC-CCCCCCH
T ss_conf 34434-3445---89999999999999999999999999999799999999999974856799999996638-8998302
Q ss_pred CCCCCC
Q ss_conf 223877
Q 003476 793 FVAGRQ 798 (816)
Q Consensus 793 ~~~~~~ 798 (816)
+....+
T Consensus 477 ~~~~~~ 482 (499)
T 2dhr_A 477 AREERE 482 (499)
T ss_dssp ------
T ss_pred HHHCCC
T ss_conf 343137
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=436.73 Aligned_cols=256 Identities=38% Similarity=0.634 Sum_probs=240.0
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECH
Q ss_conf 434578863334445875879999999998-2292588661899998189993899908999999998339968995211
Q 003476 321 KVSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS 399 (816)
Q Consensus 321 ~~~~~~~~vtf~DI~G~eevK~~L~eiV~~-lk~p~~~~~lg~~~pkgvLL~GPPGTGKT~LAkAIA~elg~pfi~is~s 399 (816)
...++.|.++|+||+|++++|++|++.|.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++++|+.++++
T Consensus 137 ~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s 216 (405)
T 4b4t_J 137 MMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGA 216 (405)
T ss_dssp CEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEHH
T ss_conf 35557999988882888999999999999987499999867999888258858999987899999998518885288868
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECC
Q ss_conf 36888730215789999999973299799983764022104875443460689999999985005999999589999849
Q 003476 400 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (816)
Q Consensus 400 el~~~~vG~~~~~ir~lF~~Ar~~aP~IIfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~eldg~~~~~~VIVIaATN 479 (816)
++.++|+|++++.++.+|..|+..+||||||||||+++.+|.... .+++.+..+++++||.+|||+....+|+||+|||
T Consensus 217 ~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~-~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATN 295 (405)
T 4b4t_J 217 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGS-GGGDSEVQRTMLELLNQLDGFETSKNIKIIMATN 295 (405)
T ss_dssp GGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSS-SGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEES
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCC-CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 951133546899999999999870994676533411115778889-9976899999999999604338888757881269
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999922379996440578117999999999999871389898533677788862789999999999999999998707
Q 003476 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN 559 (816)
Q Consensus 480 ~pd~LDpALlRpGRFdr~I~i~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAal~A~r~~ 559 (816)
+|+.||||++||||||+.|+|++|+.++|.+||+.|+++. ++..+++++.+|..|.||||+||.++|++|++.|.+++
T Consensus 296 rpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~--~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~ 373 (405)
T 4b4t_J 296 RLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKM--NLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRER 373 (405)
T ss_dssp CSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS--BCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 8144899672877676699769969999999999985599--99965799999987799999999999999999999869
Q ss_pred CCCCCHHHHHHHHHHHHCCH
Q ss_conf 93013988999999987040
Q 003476 560 KVVVEKIDFIHAVERSIAGI 579 (816)
Q Consensus 560 ~~~It~~di~~Al~r~i~g~ 579 (816)
+..|+++||..|+++++...
T Consensus 374 ~~~vt~~Df~~Al~~v~~~~ 393 (405)
T 4b4t_J 374 RIHVTQEDFELAVGKVMNKN 393 (405)
T ss_dssp CSBCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCC
T ss_conf 98759999999999985726
No 4
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=431.17 Aligned_cols=258 Identities=41% Similarity=0.665 Sum_probs=242.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECHHH
Q ss_conf 4578863334445875879999999998-229258866189999818999389990899999999833996899521136
Q 003476 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (816)
Q Consensus 323 ~~~~~~vtf~DI~G~eevK~~L~eiV~~-lk~p~~~~~lg~~~pkgvLL~GPPGTGKT~LAkAIA~elg~pfi~is~sel 401 (816)
.++.|.++|+||+|++++|++|++.|.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++++|+.++++++
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ECCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEHHHH
T ss_conf 15799998788545999999999999988429999987799999814764899980999999998446898699886995
Q ss_pred HHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCC
Q ss_conf 88873021578999999997329979998376402210487544346068999999998500599999958999984999
Q 003476 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (816)
Q Consensus 402 ~~~~vG~~~~~ir~lF~~Ar~~aP~IIfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~eldg~~~~~~VIVIaATN~p 481 (816)
.++|+|++++.++.+|..|+..+||||||||+|+++..|.... .+.......+++++|.+||++....+|+||+|||+|
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~-~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrp 358 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDG-AGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRP 358 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSS-CGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCT
T ss_pred HCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC
T ss_conf 0266778999999999998761784675223211013556767-786278999999999986555788837988287893
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99992237999644057811799999999999987138989853367778886278999999999999999999870793
Q 003476 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 561 (816)
Q Consensus 482 d~LDpALlRpGRFdr~I~i~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAal~A~r~~~~ 561 (816)
+.||+||+||||||++|+|++|+.++|.+||+.|+++. ++..+++++.||..|.||||+||.++|++|++.|.++++.
T Consensus 359 d~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~--~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~ 436 (467)
T 4b4t_H 359 NTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSM--SVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRK 436 (467)
T ss_dssp TSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTS--CBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCS
T ss_pred CCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 11795463666550799838969999999999985489--9987779999997779999999999999999999983887
Q ss_pred CCCHHHHHHHHHHHHCCHHHHH
Q ss_conf 0139889999999870402233
Q 003476 562 VVEKIDFIHAVERSIAGIEKKT 583 (816)
Q Consensus 562 ~It~~di~~Al~r~i~g~~~k~ 583 (816)
.|+++||..|+++++.|.++++
T Consensus 437 ~it~~Df~~Al~kV~~g~~k~s 458 (467)
T 4b4t_H 437 VATEKDFLKAVDKVISGYKKFS 458 (467)
T ss_dssp SBCHHHHHHHHHHHHHHHCC--
T ss_pred CCCHHHHHHHHHHHHCCCCCCH
T ss_conf 6699999999999964745612
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=429.05 Aligned_cols=255 Identities=40% Similarity=0.661 Sum_probs=239.5
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECHH
Q ss_conf 34578863334445875879999999998-22925886618999981899938999089999999983399689952113
Q 003476 322 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (816)
Q Consensus 322 ~~~~~~~vtf~DI~G~eevK~~L~eiV~~-lk~p~~~~~lg~~~pkgvLL~GPPGTGKT~LAkAIA~elg~pfi~is~se 400 (816)
..++.|.++|+||+|++++|++|++.|.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++++|+.+++++
T Consensus 172 ~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~ 251 (437)
T 4b4t_I 172 KMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSE 251 (437)
T ss_dssp EEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGG
T ss_pred EECCCCCCCCEECCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCEEEEEHHH
T ss_conf 43368998600557699999999999999876999998679997778844889996399999999998599879988799
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf 68887302157899999999732997999837640221048754434606899999999850059999995899998499
Q 003476 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (816)
Q Consensus 401 l~~~~vG~~~~~ir~lF~~Ar~~aP~IIfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~eldg~~~~~~VIVIaATN~ 480 (816)
+.++|+|++++.++.+|..|+..+||||||||||+++..|.... ...+.+..+++++||.+||++....+|+||+|||+
T Consensus 252 l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~-~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNr 330 (437)
T 4b4t_I 252 LIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSN-SGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNK 330 (437)
T ss_dssp GCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSS-CSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESC
T ss_pred HHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCC-CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 53144766999999999999865991898761222036677888-77658999999999997247678899799995798
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999223799964405781179999999999998713898985336777888627899999999999999999987079
Q 003476 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (816)
Q Consensus 481 pd~LDpALlRpGRFdr~I~i~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAal~A~r~~~ 560 (816)
|+.|||||+||||||++|+|++||.++|.+||+.|+++. ++.++++++.+|..|.||||+||.++|++|++.|.++++
T Consensus 331 pd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~--~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~ 408 (437)
T 4b4t_I 331 IETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKM--NLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERR 408 (437)
T ss_dssp STTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTS--CBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 055599886488602799808969999999999996489--999767999999767999899999999999999998489
Q ss_pred CCCCHHHHHHHHHHHHCCH
Q ss_conf 3013988999999987040
Q 003476 561 VVVEKIDFIHAVERSIAGI 579 (816)
Q Consensus 561 ~~It~~di~~Al~r~i~g~ 579 (816)
..|+++||..|++++..+.
T Consensus 409 ~~It~eDf~~Al~rv~~~~ 427 (437)
T 4b4t_I 409 MQVTAEDFKQAKERVMKNK 427 (437)
T ss_dssp SCBCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCC
T ss_conf 9669999999999870798
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=423.78 Aligned_cols=253 Identities=41% Similarity=0.649 Sum_probs=236.9
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECHH
Q ss_conf 34578863334445875879999999998-22925886618999981899938999089999999983399689952113
Q 003476 322 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (816)
Q Consensus 322 ~~~~~~~vtf~DI~G~eevK~~L~eiV~~-lk~p~~~~~lg~~~pkgvLL~GPPGTGKT~LAkAIA~elg~pfi~is~se 400 (816)
..++.|+++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++++|+.+++++
T Consensus 171 ~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~ 250 (434)
T 4b4t_M 171 EVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQ 250 (434)
T ss_dssp EEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred CCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHH
T ss_conf 66889799867609579999999999999974999998679998872687794999889999999999599889986446
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf 68887302157899999999732997999837640221048754434606899999999850059999995899998499
Q 003476 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (816)
Q Consensus 401 l~~~~vG~~~~~ir~lF~~Ar~~aP~IIfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~eldg~~~~~~VIVIaATN~ 480 (816)
+.++|+|.+++.++.+|..|+..+||||||||+|+++.+|.... ..++.+...++++||.+||++....+|+||+|||+
T Consensus 251 l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~-~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNr 329 (434)
T 4b4t_M 251 LVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSE-KSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNR 329 (434)
T ss_dssp GCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGG-GGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSS
T ss_pred HHHCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCC-CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 43134563899999999999861990896033256652257788-88746999999999997136688899899994899
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999223799964405781179999999999998713898985336777888627899999999999999999987079
Q 003476 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (816)
Q Consensus 481 pd~LDpALlRpGRFdr~I~i~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAal~A~r~~~ 560 (816)
|+.||||++||||||+.|+|++|+.++|.+||+.|+++. ++..+++++.+|..|.||||+||.++|++|++.|.++++
T Consensus 330 p~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~--~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~ 407 (434)
T 4b4t_M 330 VDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKM--TTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQ 407 (434)
T ss_dssp CCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHS--CBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHCCHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 223399671577403899808959999999999985689--998767999999868998999999999999999998699
Q ss_pred CCCCHHHHHHHHHHHHC
Q ss_conf 30139889999999870
Q 003476 561 VVVEKIDFIHAVERSIA 577 (816)
Q Consensus 561 ~~It~~di~~Al~r~i~ 577 (816)
..|+++||..|++++..
T Consensus 408 ~~i~~~Df~~Al~~v~~ 424 (434)
T 4b4t_M 408 SSVKHEDFVEGISEVQA 424 (434)
T ss_dssp SSBCHHHHHHHHHSCSS
T ss_pred CCCCHHHHHHHHHHHHC
T ss_conf 87699999999999737
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=422.32 Aligned_cols=253 Identities=42% Similarity=0.670 Sum_probs=237.7
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECHH
Q ss_conf 34578863334445875879999999998-22925886618999981899938999089999999983399689952113
Q 003476 322 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (816)
Q Consensus 322 ~~~~~~~vtf~DI~G~eevK~~L~eiV~~-lk~p~~~~~lg~~~pkgvLL~GPPGTGKT~LAkAIA~elg~pfi~is~se 400 (816)
..++.|.++|+||+|++++|++|++.|.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++++|+.+++++
T Consensus 171 ~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~ 250 (437)
T 4b4t_L 171 TSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASG 250 (437)
T ss_dssp EEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred EECCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHH
T ss_conf 33159998966717859999999999999874999998679897876999899998499999999998599989984146
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf 68887302157899999999732997999837640221048754434606899999999850059999995899998499
Q 003476 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (816)
Q Consensus 401 l~~~~vG~~~~~ir~lF~~Ar~~aP~IIfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~eldg~~~~~~VIVIaATN~ 480 (816)
+.++|+|.++..++.+|..|+..+||||||||||+++.+|.... ...+.+...++++||.+|||+....+|+||+|||+
T Consensus 251 l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~-~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNr 329 (437)
T 4b4t_L 251 IVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEG-TSADREIQRTLMELLTQMDGFDNLGQTKIIMATNR 329 (437)
T ss_dssp TCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSC-CSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESS
T ss_pred HCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 20552017899999999999863896464204433333334478-87536899999999998346667798699993399
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999223799964405781179999999999998713898985336777888627899999999999999999987079
Q 003476 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (816)
Q Consensus 481 pd~LDpALlRpGRFdr~I~i~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAal~A~r~~~ 560 (816)
|+.|||||+||||||+.|+|++|+.++|.+||+.|+++. ++..+++++.+|..|.||||+||.++|++|++.|.++++
T Consensus 330 p~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~--~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~ 407 (437)
T 4b4t_L 330 PDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKV--KKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDR 407 (437)
T ss_dssp TTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTS--CBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 033189782777102001359969999999999986589--998645899999768999999999999999999998699
Q ss_pred CCCCHHHHHHHHHHHHC
Q ss_conf 30139889999999870
Q 003476 561 VVVEKIDFIHAVERSIA 577 (816)
Q Consensus 561 ~~It~~di~~Al~r~i~ 577 (816)
..|+.+||..|++++..
T Consensus 408 ~~i~~~d~~~Al~~v~~ 424 (437)
T 4b4t_L 408 DHINPDDLMKAVRKVAE 424 (437)
T ss_dssp SSBCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
T ss_conf 87799999999999875
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=419.91 Aligned_cols=246 Identities=43% Similarity=0.675 Sum_probs=174.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECHHHHH
Q ss_conf 78863334445875879999999998-22925886618999981899938999089999999983399689952113688
Q 003476 325 QGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (816)
Q Consensus 325 ~~~~vtf~DI~G~eevK~~L~eiV~~-lk~p~~~~~lg~~~pkgvLL~GPPGTGKT~LAkAIA~elg~pfi~is~sel~~ 403 (816)
..+.++|+||+|++++|++|++++.+ +++|+.|..+|..+|+|+|||||||||||++|+++|++++++|+.++++++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEHHHHHC
T ss_conf 58999903514999999999999998751989886358999975897798999889999999997198399997379543
Q ss_pred HHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCC
Q ss_conf 87302157899999999732997999837640221048754434606899999999850059999995899998499999
Q 003476 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (816)
Q Consensus 404 ~~vG~~~~~ir~lF~~Ar~~aP~IIfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~eldg~~~~~~VIVIaATN~pd~ 483 (816)
+|+|+++..++.+|+.|+.++||||||||||+++.+|+.. .++...+++++|+.+||++..+.+|+||++||+++.
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~----~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~ 352 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT----HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTC----CCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCCC----CCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHH
T ss_conf 3316789999999999997299299985100233445778----873999999999999746666698799996698032
Q ss_pred CCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC---
Q ss_conf 99223799964405781179999999999998713898985336777888627899999999999999999987079---
Q 003476 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK--- 560 (816)
Q Consensus 484 LDpALlRpGRFdr~I~i~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAal~A~r~~~--- 560 (816)
||++|+|||||++.|+++.|+.++|.+||+.|+++. ++..++++..+|..|.||+|+||.++|++|++.|.++..
T Consensus 353 LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~--~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i 430 (806)
T 3cf2_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM--KLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLI 430 (806)
T ss_dssp SCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSS--EECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 698885786361688668979899999999985689--988643899999756899899999999999999998414512
Q ss_pred --------------CCCCHHHHHHHHHHHH
Q ss_conf --------------3013988999999987
Q 003476 561 --------------VVVEKIDFIHAVERSI 576 (816)
Q Consensus 561 --------------~~It~~di~~Al~r~i 576 (816)
..++.+||..|+....
T Consensus 431 ~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ 460 (806)
T 3cf2_A 431 DLEDETIDAEVMNSLAVTMDDFRWALSQSN 460 (806)
T ss_dssp GGTCCCCSHHHHHHCEECTTHHHHHHSSSS
T ss_pred CCCCCCCCHHHHCCCEEEHHHHHHHHHHCC
T ss_conf 000133204552255651999999997287
No 9
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=415.97 Aligned_cols=252 Identities=44% Similarity=0.654 Sum_probs=236.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECHHH
Q ss_conf 4578863334445875879999999998-229258866189999818999389990899999999833996899521136
Q 003476 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (816)
Q Consensus 323 ~~~~~~vtf~DI~G~eevK~~L~eiV~~-lk~p~~~~~lg~~~pkgvLL~GPPGTGKT~LAkAIA~elg~pfi~is~sel 401 (816)
.++.|.++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++++|+.++++++
T Consensus 163 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l 242 (428)
T 4b4t_K 163 ENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF 242 (428)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred CCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCHH
T ss_conf 77899998888516999999999999998739999986799988658888989988899999999986799699933044
Q ss_pred HHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCC
Q ss_conf 88873021578999999997329979998376402210487544346068999999998500599999958999984999
Q 003476 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (816)
Q Consensus 402 ~~~~vG~~~~~ir~lF~~Ar~~aP~IIfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~eldg~~~~~~VIVIaATN~p 481 (816)
.++|+|.++..++++|..|+..+||||||||+|+++..|.... ...+.+..+++++||.+|||+....+|+||+|||+|
T Consensus 243 ~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~-~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~ 321 (428)
T 4b4t_K 243 VHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQ-TGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRA 321 (428)
T ss_dssp CCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSC-SCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCS
T ss_pred HCCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHCCCCCCC-CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCH
T ss_conf 3145460599999999999973997463002243303556787-888718999999999984387877997999961981
Q ss_pred CCCCCCCCCCCCCCCEEEEC-CCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99992237999644057811-79999999999998713898985336777888627899999999999999999987079
Q 003476 482 DVLDPALRRPGRFDRVVMVE-TPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (816)
Q Consensus 482 d~LDpALlRpGRFdr~I~i~-~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAal~A~r~~~ 560 (816)
+.|||||+||||||+.|+|+ +|+.++|..||+.|+++. ++.++++++.+|..|.||||+||.++|++|++.|.++++
T Consensus 322 ~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~--~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~ 399 (428)
T 4b4t_K 322 DTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKM--SLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR 399 (428)
T ss_dssp SSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSS--CBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHCCHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 556966636875159998199999999999999985579--999635899999777998899999999999999998799
Q ss_pred CCCCHHHHHHHHHHHHC
Q ss_conf 30139889999999870
Q 003476 561 VVVEKIDFIHAVERSIA 577 (816)
Q Consensus 561 ~~It~~di~~Al~r~i~ 577 (816)
..|+++||..|+.+++.
T Consensus 400 ~~i~~~d~~~A~~~~~~ 416 (428)
T 4b4t_K 400 YVILQSDLEEAYATQVK 416 (428)
T ss_dssp SSBCHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHC
T ss_conf 87799999999997617
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=380.24 Aligned_cols=315 Identities=36% Similarity=0.674 Sum_probs=257.1
Q ss_pred CEEEEECCCCCCCCHHHH--HHHCCCEECCCCC---------------------------CCCCHHHHHHHHHHHHHHHH
Q ss_conf 049995499998506899--8848936515888---------------------------88660899999999999999
Q 003476 242 RIVYTTTRPSDIKTPYEK--MLENQVEFGSPDK---------------------------RSGGFLNSALIALFYVAVLA 292 (816)
Q Consensus 242 ~~~~~t~~~~~~~~~~~~--~~~~~v~~~~~~~---------------------------~~~~~~~~~l~~l~~~~~~~ 292 (816)
.++.+|++|.+++..+.+ +++..+++..|+. .+.+|.+++|..++-.+.+.
T Consensus 342 ~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~ 421 (806)
T 3cf2_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQ 421 (806)
T ss_dssp EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCHHHCCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 99996698032698885786361688668979899999999985689988643899999756899899999999999999
Q ss_pred HHHHHCCC-CCCC-------------CCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHH
Q ss_conf 99831121-1122-------------236555--5567899998434578863334445875879999999998-22925
Q 003476 293 GLLHRFPV-SFSQ-------------TAGQVG--HRKTRGPGGAKVSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPD 355 (816)
Q Consensus 293 ~~~~~~~~-~~~~-------------~~~~~~--~~~~~~~~~~~~~~~~~~vtf~DI~G~eevK~~L~eiV~~-lk~p~ 355 (816)
.+.+.... .... ....+. ......+.......+.|.++|+|++|++++|++|++.+.+ +++|+
T Consensus 422 A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~ 501 (806)
T 3cf2_A 422 AIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPD 501 (806)
T ss_dssp HHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSG
T ss_pred HHHHCCCCCCCCCCCCCHHHHCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHH
T ss_conf 99841451200013320455225565199999999728783112344457887888817889999999999975666899
Q ss_pred HHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 88661899998189993899908999999998339968995211368887302157899999999732997999837640
Q 003476 356 KYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDA 435 (816)
Q Consensus 356 ~~~~lg~~~pkgvLL~GPPGTGKT~LAkAIA~elg~pfi~is~sel~~~~vG~~~~~ir~lF~~Ar~~aP~IIfIDEIDa 435 (816)
.|..+|.++|+|+|||||||||||++|+|+|++++.+|+.++++++.++|+|++++.++.+|+.|+..+||||||||||+
T Consensus 502 ~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 502 KFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp GGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred HHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCHHHCCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHH
T ss_conf 99714888886079866877896399999999838966874241121033436899999999999972996352042567
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 22104875443460689999999985005999999589999849999999223799964405781179999999999998
Q 003476 436 VAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVH 515 (816)
Q Consensus 436 L~~~r~~~~~~~~~~e~~~~Ln~LL~eldg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~i~~Pd~~eR~~ILk~~ 515 (816)
+...|+... ...+....+++++||.+|||+....+|+||+|||+|+.||+|++||||||++|+|++|+.++|.+||+.+
T Consensus 582 l~~~R~~~~-~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~ 660 (806)
T 3cf2_A 582 IAKARGGNI-GDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN 660 (806)
T ss_dssp CC---------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTT
T ss_pred HHHCCCCCC-CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHCCHHHCCCCCCEEEEEECCCCHHHHHHHHHHH
T ss_conf 763158888-8986699999999999974878779989999379804389847177855079997996999999999998
Q ss_pred HHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 71389898533677788862789999999999999999998707
Q 003476 516 VSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN 559 (816)
Q Consensus 516 l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~LvneAal~A~r~~ 559 (816)
+++. ++..+++++.||+.|.||||+||.++|++|++.|.++.
T Consensus 661 l~~~--~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~ 702 (806)
T 3cf2_A 661 LRKS--PVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp SSCC----CCC----------------CHHHHHHHHHHHHHHHH
T ss_pred HCCC--CCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 5679--99877899999976899999999999999999999999
Done!