Query         003477
Match_columns 816
No_of_seqs    504 out of 3671
Neff          6.8 
Searched_HMMs 29240
Date          Tue Mar 26 18:34:35 2013
Command       hhsearch -i /local_scratch/syshi/lefta3m/003477.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1525-1529//hhsearch_pdb/003477hhsearch_pdb 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3ljn_A Hypothetical protein; a   1.0       1       1  194.2   8.2  238  296-576    22-279 (364)
  2 1n11_A Ankyrin; clathrin, BAND   1.0       1       1  189.8  15.1  138  428-573   238-376 (437)
  3 2dfs_A Myosin-5A; myosin-V, in   1.0       1       1  189.2  17.1  142  611-799   766-915 (1080)
  4 4b93_B Ankyrin repeat domain-c   1.0       1       1  189.0   8.5  143  427-577    78-221 (269)
  5 1oy3_D Transcription factor in   1.0       1       1  186.2  11.0  245  296-579    11-263 (282)
  6 4gpm_A Engineered protein OR26   1.0       1       1  185.0  17.5  143  419-569    21-164 (169)
  7 4g8k_A 2-5A-dependent ribonucl   1.0       1       1  184.8  11.9  130  429-569   196-329 (337)
  8 2pnn_A Transient receptor pote   1.0       1       1  181.3   7.0  136  433-570    99-263 (273)
  9 1n11_A Ankyrin; clathrin, BAND   1.0       1       1  179.5  14.5  243  297-564   149-400 (437)
 10 2fo1_E LIN-12 protein; beta-ba   1.0       1       1  177.6  12.3  132  428-567   228-372 (373)

No 1  
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=1.00  E-value=1  Score=194.24  Aligned_cols=238  Identities=14%  Similarity=0.107  Sum_probs=170.6

Q ss_pred             CCCCEEEECCCCCHHHHHHHCCCCEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             77718998598311588531384100189999974113440379975432001467898767777766655550099999
Q 003477          296 SKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQLHAPVASSEDKSKWEEFQVQ  375 (816)
Q Consensus       296 ~~~~~ac~FG~~~V~a~liq~GvlrC~~Pph~~G~V~l~v~~~~~~~~s~~~~Fey~~~~l~~~~~~~~d~~~~~~~~l~  375 (816)
                      +..+++|..|+.+++..+++.|+-....  ...|..||++++..+..  +++.+      +.....+..+..+++++++.
T Consensus        22 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~--d~~g~t~L~~A~~~g~~--~~v~~------Ll~~g~~~~~~~g~t~L~~A   91 (364)
T 3ljn_A           22 EKIHVAARKGQTDEVRRLIETGVSPTIQ--NRFGCTALHLACKFGCV--DTAKY------LASVGEVHSLWHGQKPIHLA   91 (364)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHHCCH--HHHHH------HHHHCCCCCCBTTBCHHHHH
T ss_pred             CHHHHHHHCCCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHCCCH--HHHHH------HHHCCCCCCCCCCCCHHHHH
T ss_conf             7999999809999999999869894224--89999699999985989--99999------99779975456899889999


Q ss_pred             H-----HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHC-------CCCCCCCCCCCHHHHHH
Q ss_conf             9-----99998712766643223689999278877774312136886899998628-------99999875573879999
Q 003477          376 M-----RLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVG-------DKRTSLPEAKDSFFELT  443 (816)
Q Consensus       376 ~-----rl~~lL~~~~~~l~il~~~~~~~~~~e~~~~~~~i~~~~~~~~~l~~~l~-------~~~~~~~~g~t~L~~aa  443 (816)
                      .     .++++|......                         .......+.....       +.+.....+.++|+.|+
T Consensus        92 ~~~g~~~~v~~Ll~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~  146 (364)
T 3ljn_A           92 VMANKTDLVVALVEGAKE-------------------------RGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCV  146 (364)
T ss_dssp             HHTTCHHHHHHHHHHHHH-------------------------HTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHH
T ss_pred             HHCCCHHHHHHHHHHCCC-------------------------CCCCHHHHHHHCCHHHHHHHCCCCCCCCCCCHHHHHH
T ss_conf             886998899999971333-------------------------5877788986302676654035667988987899999


Q ss_pred             HCC--CCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC-----CCCCCCCCCCHHHHHHHCCCH
Q ss_conf             829--907999999982-999875476898168899870992558997868999-----752358998687899982998
Q 003477          444 LKS--KLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLS-----LDFRDKYGWTALHWAAYYGRE  515 (816)
Q Consensus       444 ~~~--~l~~~Lv~~Ll~-ga~~n~~d~~G~T~LHlAa~~G~~~~v~~LL~~Ga~-----in~rD~~G~TpLh~Aa~~G~~  515 (816)
                      ..+  +..  +++.|++ |++++..|..|.||||+|+..|+.+++++|+..|++     +|.+|..|+||||+|+..|+.
T Consensus       147 ~~g~~~~~--~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~  224 (364)
T 3ljn_A          147 GLGPEYLE--MIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWE  224 (364)
T ss_dssp             HSCGGGHH--HHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCH
T ss_pred             HCCCCHHH--HHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCH
T ss_conf             74996699--9999997699973628899989999998298999999986055412355523288998099999975988


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             8899999549999988899988999997999999829999999998610000236764221
Q 003477          516 KMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAG  576 (816)
Q Consensus       516 eiV~lLL~~GA~~~~~td~~~~d~~G~TpL~lA~~~G~~~iv~~Lle~ga~~~l~~l~l~~  576 (816)
                      ++|++|+++|++++.      +|..|.|||++|+..|+.+++++|+++|++....+.....
T Consensus       225 ~~v~~Ll~~gad~~~------~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~  279 (364)
T 3ljn_A          225 DVAMRFVEMGIDVNM------EDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHN  279 (364)
T ss_dssp             HHHHHHHTTTCCTTC------CCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBS
T ss_pred             HHHHHHHHCCCCCCC------CCCCCCCHHHHHHHHCHHHHHHHHHHCCCCHHHHCCCCCC
T ss_conf             999999986999888------7999998899999838299999999748805541575667


No 2  
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=1.00  E-value=1  Score=189.76  Aligned_cols=138  Identities=17%  Similarity=0.198  Sum_probs=83.4

Q ss_pred             CCCCCCCCCCHHHHHHHCCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf             9999875573879999829907999999982-999875476898168899870992558997868999752358998687
Q 003477          428 KRTSLPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTAL  506 (816)
Q Consensus       428 ~~~~~~~g~t~L~~aa~~~~l~~~Lv~~Ll~-ga~~n~~d~~G~T~LHlAa~~G~~~~v~~LL~~Ga~in~rD~~G~TpL  506 (816)
                      .+.....+.++|+.|+..++..  +++.|++ |++++..+..|.||||+|+..|+.+++++|+..|+++|.+|..|+|||
T Consensus       238 ~~~~~~~g~t~L~~A~~~g~~~--~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L  315 (437)
T 1n11_A          238 ANAESVQGVTPLHLAAQEGHAE--MVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPL  315 (437)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHH--HHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHH
T ss_pred             CCCCCCCCCCHHHHHHHCCCHH--HHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHH
T ss_conf             8887989997999999778899--99999966999998799999799999984999999999848756788799998899


Q ss_pred             HHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf             8999829988899999549999988899988999997999999829999999998610000236764
Q 003477          507 HWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMT  573 (816)
Q Consensus       507 h~Aa~~G~~eiV~lLL~~GA~~~~~td~~~~d~~G~TpL~lA~~~G~~~iv~~Lle~ga~~~l~~l~  573 (816)
                      |+|+.+|+.++|++|+++|++++.      ++..|.||||+|+..|+.+++++|+++|++++..+..
T Consensus       316 ~~A~~~g~~~~v~~Ll~~gad~n~------~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~  376 (437)
T 1n11_A          316 HVASHYGNIKLVKFLLQHQADVNA------KTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSD  376 (437)
T ss_dssp             HHHHHSSCSHHHHHHHHTTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSS
T ss_pred             HHHHHCCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCC
T ss_conf             999986949999999966999998------8999988999999878199999999776899887899


No 3  
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=1.00  E-value=1  Score=189.22  Aligned_cols=142  Identities=28%  Similarity=0.405  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Q ss_conf             65788999999983456899999974078189999999999988743217899999------999999999999999999
Q 003477          611 TAAEAAARIQAAFREHSLKVQTKAIRFSSPEEEAQNIIAALKIQHAFRNFEVRKKM------AAAARIQHRFRSWKVRKE  684 (816)
Q Consensus       611 ~~~~aa~~IQ~~~R~~~~R~r~~~~r~~~~~~~~~~~~Aa~~IQ~~~R~~~~rk~~------~Aav~IQa~~Rg~~~Rk~  684 (816)
                      ....+|+.||++||+|+.|+++++++           .+++.||+.||++.+|+.+      .||+.||+.||||++|+.
T Consensus       766 ~l~~aa~~IQa~~Rg~l~Rk~~~~~r-----------~aai~IQ~~~Rg~~aR~~~~~lr~~~AAi~IQs~~Rg~~~Rk~  834 (1080)
T 2dfs_A          766 KLRAACIRIQKTIRGWLMRKKYMRMR-----------RAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKR  834 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             88877778888877889999850127-----------7899999999998876202212200467778788754999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf             99989999999999965999999999999--9999999999999999744442333544301489998742468999999
Q 003477          685 FLNMRRQAIKIQAAFRGFQVRKQYGKILW--SVGVLEKAILRWRLKRKGFRGLQVDRVEVEAVSDPNHEGDAEEDFYRAS  762 (816)
Q Consensus       685 f~~~r~aai~IQa~~RG~~~Rk~y~~~~~--sv~~IQ~~iR~~r~~rr~lr~lr~~~~~~~~~~~q~~~~~~~~~~~k~~  762 (816)
                      |..++.+++.||++|||+++|+.|+.++.  ++..||+.||+|+.++.+.                              
T Consensus       835 y~~lr~aai~IQs~~Rg~laRr~~~~lr~~~aav~IQ~~~Rg~l~R~~y~------------------------------  884 (1080)
T 2dfs_A          835 YQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYH------------------------------  884 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHTT------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------
T ss_conf             99998888999999988999999999998778889999999999999988------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999978559999999999999999
Q 003477          763 RKQAEERVERSVVRVQSMFRSKKAQEEYRRMKLAHDQ  799 (816)
Q Consensus       763 Rkq~e~r~~~AvirIQs~~R~~~AR~qyrrl~~~~~~  799 (816)
                            +..++++.||++||++.||++|++|+.+++.
T Consensus       885 ------~~~~aai~iQs~~R~~laRr~~~~Lk~ear~  915 (1080)
T 2dfs_A          885 ------RTLKAIVYLQCCYRRMMAKRELKKLKIEARS  915 (1080)
T ss_dssp             ------TTHHHHHHHHHHHHHHHHHHHTTTC------
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             ------8776699999999999999999999999987


No 4  
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=1.00  E-value=1  Score=189.02  Aligned_cols=143  Identities=17%  Similarity=0.138  Sum_probs=130.7

Q ss_pred             CCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf             99999875573879999829907999999982-99987547689816889987099255899786899975235899868
Q 003477          427 DKRTSLPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTA  505 (816)
Q Consensus       427 ~~~~~~~~g~t~L~~aa~~~~l~~~Lv~~Ll~-ga~~n~~d~~G~T~LHlAa~~G~~~~v~~LL~~Ga~in~rD~~G~Tp  505 (816)
                      +.+....+|.||||.|+..++..  +++.|++ |++++..+..|.||+|+|+..++.+++++|+..|+++|.+|..|+||
T Consensus        78 dvn~~d~~G~TpLh~A~~~g~~~--~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~Tp  155 (269)
T 4b93_B           78 GVNVTSQDGSSPLHVAALHGRAD--LIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTP  155 (269)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCTT--HHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCH
T ss_pred             CCCCCCCCCCCHHHHHHHCCCHH--HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCH
T ss_conf             98876999999999999849699--9999986599867557899983300001272999999998799988778999999


Q ss_pred             HHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             789998299888999995499999888999889999979999998299999999986100002367642211
Q 003477          506 LHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGN  577 (816)
Q Consensus       506 Lh~Aa~~G~~eiV~lLL~~GA~~~~~td~~~~d~~G~TpL~lA~~~G~~~iv~~Lle~ga~~~l~~l~l~~~  577 (816)
                      ||+||..|+.++|++|+++|++++.      ++..|.||||+|+..|+.+++++|+++|++.+..+.....+
T Consensus       156 L~~A~~~g~~~~v~~Ll~~gadvn~------~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~Tp  221 (269)
T 4b93_B          156 LIYACSGGHHELVALLLQHGASINA------SNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTA  221 (269)
T ss_dssp             HHHHHHTTCGGGHHHHHHTTCCTTC------BCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCS
T ss_pred             HHHHHHCCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCH
T ss_conf             9999987899999999978799783------21478838999998688999999998788998869999999


No 5  
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=1.00  E-value=1  Score=186.17  Aligned_cols=245  Identities=13%  Similarity=0.053  Sum_probs=155.1

Q ss_pred             CCCCEEEECCCCCHHHHHHHCCCCEECCC-CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             77718998598311588531384100189-99997411344037997543200146789876777776665555009999
Q 003477          296 SKSNMFCVCGEVRVPAEFVQAGVYRCFLP-PHSPGLFLLYMSLDGHKPISQVLNFEYRSPQLHAPVASSEDKSKWEEFQV  374 (816)
Q Consensus       296 ~~~~~ac~FG~~~V~a~liq~GvlrC~~P-ph~~G~V~l~v~~~~~~~~s~~~~Fey~~~~l~~~~~~~~d~~~~~~~~l  374 (816)
                      ++.+++|..|+.+++..++..|.-..... ....|..||+.++..+..  +++.+-...    .......+..+++++++
T Consensus        11 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~--~~v~~Ll~~----ga~~~~~~~~g~tpL~~   84 (282)
T 1oy3_D           11 TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEA--STVEKLYAA----GAGVLVAERGGHTALHL   84 (282)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCH--HHHHHHHHT----TCCSSCCCTTSCCHHHH
T ss_pred             CHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCH--HHHHHHHHC----CCCCCCCCCCCCCHHHH
T ss_conf             099999976878899999854777431006478898799999986999--999999986----99988779899999999


Q ss_pred             H-----HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCH
Q ss_conf             9-----99999871276664322368999927887777431213688689999862899999875573879999829907
Q 003477          375 Q-----MRLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDKRTSLPEAKDSFFELTLKSKLK  449 (816)
Q Consensus       375 ~-----~rl~~lL~~~~~~l~il~~~~~~~~~~e~~~~~~~i~~~~~~~~~l~~~l~~~~~~~~~g~t~L~~aa~~~~l~  449 (816)
                      .     ..++++|.........       ..                 ......  .........+..+++.++......
T Consensus        85 A~~~~~~~~v~~Ll~~~~~~~~-------~~-----------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  138 (282)
T 1oy3_D           85 ACRVRAHTCACVLLQPRPSHPR-------DA-----------------SDTYLT--QSQDCTPDTSHAPAAVDSQPNPEN  138 (282)
T ss_dssp             HTTTTCHHHHHHHSSSCCSSCC-------CC-------------------------------------------------
T ss_pred             HHHCCCCCHHHHHHCCCCCCCH-------HH-----------------HHHHHH--CCCCCCCCHHCCHHHHCCCCCCCH
T ss_conf             9873884055764234777722-------46-----------------777752--343458501100222013565300


Q ss_pred             HHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHCCCHHHHHHHHHCCCC
Q ss_conf             999999982-9998754768981688998709925589978689997523589-98687899982998889999954999
Q 003477          450 EWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKY-GWTALHWAAYYGREKMVVDLLSAGAK  527 (816)
Q Consensus       450 ~~Lv~~Ll~-ga~~n~~d~~G~T~LHlAa~~G~~~~v~~LL~~Ga~in~rD~~-G~TpLh~Aa~~G~~eiV~lLL~~GA~  527 (816)
                      . ....+.. +.+++..|..|.||||+|+..|+.+++++|+..|++++.++.. |+||||+|+..|+.+++++|+++|++
T Consensus       139 ~-~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad  217 (282)
T 1oy3_D          139 E-EEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD  217 (282)
T ss_dssp             ------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             H-HHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC
T ss_conf             0-002335554057776789968999999749999999999838987888877896899999883989999999975999


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             9988899988999997999999829999999998610000236764221122
Q 003477          528 PNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNIS  579 (816)
Q Consensus       528 ~~~~td~~~~d~~G~TpL~lA~~~G~~~iv~~Lle~ga~~~l~~l~l~~~is  579 (816)
                      ++.      ++..|.||||+|+..|+.+++++|+++|++.+..+.....++.
T Consensus       218 ~~~------~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~  263 (282)
T 1oy3_D          218 PTA------RMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCS  263 (282)
T ss_dssp             TTC------CCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC--------
T ss_pred             CCC------CCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             866------4469997899999849917999999849985767874556543


No 6  
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=1.00  E-value=1  Score=185.03  Aligned_cols=143  Identities=22%  Similarity=0.299  Sum_probs=129.7

Q ss_pred             HHHHHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC
Q ss_conf             9999862899999875573879999829907999999982-999875476898168899870992558997868999752
Q 003477          419 AYLFKSVGDKRTSLPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDF  497 (816)
Q Consensus       419 ~~l~~~l~~~~~~~~~g~t~L~~aa~~~~l~~~Lv~~Ll~-ga~~n~~d~~G~T~LHlAa~~G~~~~v~~LL~~Ga~in~  497 (816)
                      ..++....+.+.....|.||++.++..++..  ++..+++ |++++.+|..|.||||+|+..|+.+++++|+++|+++|.
T Consensus        21 ~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~--~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~   98 (169)
T 4gpm_A           21 KDLIENGADVNASDSDGRTPLHHAAENGHKE--VVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNA   98 (169)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH--HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHCCCCCCCCCCCCCCHHHHHHHCCCHH--HHHHHHHCCCCHHHHCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC
T ss_conf             9999878998884999898999999849999--99999831531133035799999999993979999999987699998


Q ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf             358998687899982998889999954999998889998899999799999982999999999861000023
Q 003477          498 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQF  569 (816)
Q Consensus       498 rD~~G~TpLh~Aa~~G~~eiV~lLL~~GA~~~~~td~~~~d~~G~TpL~lA~~~G~~~iv~~Lle~ga~~~l  569 (816)
                      +|..|+||||+|+..|+.++|++|+++|++++.      +|..|.|||++|+..|+.+++++|+++||+..-
T Consensus        99 ~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~------~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A           99 KDSDGRTPLHHAAENGHKEVVKLLISKGADVNT------SDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC
T ss_conf             799999899999985989999999986997415------699999999999986899999999987999077


No 7  
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=1.00  E-value=1  Score=184.81  Aligned_cols=130  Identities=15%  Similarity=0.081  Sum_probs=71.4

Q ss_pred             CCCCCCCCCHHHHHHHCCCC--HHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCC
Q ss_conf             99987557387999982990--7999999982-99987547689816889987099255899786-89997523589986
Q 003477          429 RTSLPEAKDSFFELTLKSKL--KEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSW-SGLSLDFRDKYGWT  504 (816)
Q Consensus       429 ~~~~~~g~t~L~~aa~~~~l--~~~Lv~~Ll~-ga~~n~~d~~G~T~LHlAa~~G~~~~v~~LL~-~Ga~in~rD~~G~T  504 (816)
                      +.....+.++++.++.....  .+.++++|++ |++++.+|..|.||||+|+..|+.++++.|+. .|+++|.+|..|+|
T Consensus       196 n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~T  275 (337)
T 4g8k_A          196 NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKT  275 (337)
T ss_dssp             TCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCB
T ss_pred             CCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             76578897278999997375668999999997799988768999987899998512589999987348756676899999


Q ss_pred             HHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf             87899982998889999954999998889998899999799999982999999999861000023
Q 003477          505 ALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQF  569 (816)
Q Consensus       505 pLh~Aa~~G~~eiV~lLL~~GA~~~~~td~~~~d~~G~TpL~lA~~~G~~~iv~~Lle~ga~~~l  569 (816)
                      |||+|+..|+.++|++||++||+++.           .+||++|+.+|+.+++++|+++||++++
T Consensus       276 pL~~A~~~g~~~iv~~Ll~~GAd~n~-----------~~~L~~A~~~~~~~iv~~Ll~~GA~~d~  329 (337)
T 4g8k_A          276 ALLLAVELKLKKIAELLCKRGASTDC-----------GDLVMTARRNYDHSLVKVLLSHGAKEDF  329 (337)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTSCSSTT-----------CCHHHHHHHTTCHHHHHHHHHTTCCC--
T ss_pred             HHHHHHHCCCHHHHHHHHHCCCCCCC-----------CCHHHHHHHCCCHHHHHHHHHCCCCCCC
T ss_conf             99999986879999999987899998-----------7899999986999999999987699898


No 8  
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=1.00  E-value=1  Score=181.30  Aligned_cols=136  Identities=18%  Similarity=0.214  Sum_probs=121.0

Q ss_pred             CCCCCHHHHHHHCCCCHHHHHHHHHC-CCCCCCCCC--------------CCCCHHHHHHHCCCHHHHHHHHH---CCCC
Q ss_conf             75573879999829907999999982-999875476--------------89816889987099255899786---8999
Q 003477          433 PEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDV--------------HGQGVIHLCAMLGYTWAILLFSW---SGLS  494 (816)
Q Consensus       433 ~~g~t~L~~aa~~~~l~~~Lv~~Ll~-ga~~n~~d~--------------~G~T~LHlAa~~G~~~~v~~LL~---~Ga~  494 (816)
                      ..+.+|||.|+..++..  +++.|++ |++++..+.              .|.||||+|+..|+.+++++|+.   .|++
T Consensus        99 ~~g~tpL~~A~~~g~~~--~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad  176 (273)
T 2pnn_A           99 YKGQTALHIAIERRNMT--LVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD  176 (273)
T ss_dssp             TTTCCHHHHHHHTTCHH--HHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC
T ss_pred             CCCCCHHHHHHHCCCHH--HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC
T ss_conf             78988899999819899--9999997799967664543223212233345788899999983997999999836667898


Q ss_pred             CCCCCCCCCCHHHHHHHCCC---------HHHHHHHHHCCCCCCCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             75235899868789998299---------8889999954999998889-9988999997999999829999999998610
Q 003477          495 LDFRDKYGWTALHWAAYYGR---------EKMVVDLLSAGAKPNLVTD-PTSQNPGGLNAADIASKKGFDGLAAFLSEQA  564 (816)
Q Consensus       495 in~rD~~G~TpLh~Aa~~G~---------~eiV~lLL~~GA~~~~~td-~~~~d~~G~TpL~lA~~~G~~~iv~~Lle~g  564 (816)
                      +|.+|..|+||||+|+..|+         .+++++|+.+|++++...+ .+.+|..|.||||+|+..|+.+++++|+++|
T Consensus       177 ~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  256 (273)
T 2pnn_A          177 ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQRE  256 (273)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHCC
T ss_conf             43007899849999987457630379999999999998641014422311255899998999999949499999999779


Q ss_pred             H-HCCCC
Q ss_conf             0-00236
Q 003477          565 L-VAQFN  570 (816)
Q Consensus       565 a-~~~l~  570 (816)
                      + ++...
T Consensus       257 a~dp~~~  263 (273)
T 2pnn_A          257 IHEPECR  263 (273)
T ss_dssp             TC-----
T ss_pred             CCCCHHH
T ss_conf             9980223


No 9  
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=1.00  E-value=1  Score=179.53  Aligned_cols=243  Identities=16%  Similarity=0.183  Sum_probs=164.7

Q ss_pred             CCCEEEECCCCCHHHHHHHCCCCEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             77189985983115885313841001899999741134403799754320014678987677777666555500999999
Q 003477          297 KSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQLHAPVASSEDKSKWEEFQVQM  376 (816)
Q Consensus       297 ~~~~ac~FG~~~V~a~liq~GvlrC~~Pph~~G~V~l~v~~~~~~~~s~~~~Fey~~~~l~~~~~~~~d~~~~~~~~l~~  376 (816)
                      +.+++|..|+.++...+++.|......  ...|..|++.++..+..  +++.+-...    .......+..++++++...
T Consensus       149 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~--~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~  220 (437)
T 1n11_A          149 PLHVAAKYGKVRVAELLLERDAHPNAA--GKNGLTPLHVAVHHNNL--DIVKLLLPR----GGSPHSPAWNGYTPLHIAA  220 (437)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCC--CSSCCCHHHHHHHTTCH--HHHHHHGGG----TCCSCCCCTTCCCHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHCCCH--HHHHHHHHC----CCCCCCCCCCCCCHHHHHH
T ss_conf             999999769899999999679998777--89998889999981999--999999847----9998876778998899999


Q ss_pred             -----HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC---CCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCC
Q ss_conf             -----999987127666432236899992788777743121368---868999986289999987557387999982990
Q 003477          377 -----RLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCIS---NSWAYLFKSVGDKRTSLPEAKDSFFELTLKSKL  448 (816)
Q Consensus       377 -----rl~~lL~~~~~~l~il~~~~~~~~~~e~~~~~~~i~~~~---~~~~~l~~~l~~~~~~~~~g~t~L~~aa~~~~l  448 (816)
                           .++++|...+.......  ..+.       .........   +....++....+.+.....+.++|+.++..++.
T Consensus       221 ~~~~~~~~~~Ll~~g~~~~~~~--~~g~-------t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~  291 (437)
T 1n11_A          221 KQNQVEVARSLLQYGGSANAES--VQGV-------TPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHV  291 (437)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCC--TTCC-------CHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             HCCCHHHHHHHHHCCCCCCCCC--CCCC-------CHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCH
T ss_conf             8698999999997699988879--8999-------799999977889999999966999998799999799999984999


Q ss_pred             HHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC
Q ss_conf             7999999982-999875476898168899870992558997868999752358998687899982998889999954999
Q 003477          449 KEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAK  527 (816)
Q Consensus       449 ~~~Lv~~Ll~-ga~~n~~d~~G~T~LHlAa~~G~~~~v~~LL~~Ga~in~rD~~G~TpLh~Aa~~G~~eiV~lLL~~GA~  527 (816)
                      .  +++.|++ |++++..|..|.||||+|+..|+.+++++|+..|+++|.+|..|+||||+|+..|+.++|++|+++|++
T Consensus       292 ~--~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~  369 (437)
T 1n11_A          292 P--VADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS  369 (437)
T ss_dssp             H--HHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             H--HHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCC
T ss_conf             9--99999848756788799998899999986949999999966999998899998899999987819999999977689


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             9988899988999997999999829999999998610
Q 003477          528 PNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQA  564 (816)
Q Consensus       528 ~~~~td~~~~d~~G~TpL~lA~~~G~~~iv~~Lle~g  564 (816)
                      ++.      +|..|.||+++|...|+..++++|....
T Consensus       370 ~~~------~~~~g~t~l~~A~~~g~~~~~~~l~~~~  400 (437)
T 1n11_A          370 PNE------VSSDGTTPLAIAKRLGYISVTDVLKVVT  400 (437)
T ss_dssp             SCC------CCSSSCCHHHHHHHTTCHHHHHHHHHHC
T ss_pred             CCC------CCCCCCCHHHHHHHCCCHHHHHHHHHCC
T ss_conf             988------7899898999998849589999998602


No 10 
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=1.00  E-value=1  Score=177.61  Aligned_cols=132  Identities=16%  Similarity=0.156  Sum_probs=114.9

Q ss_pred             CCCCCCCCCCHHHHHHHCC---CCHHHHHHHHHC-CCCCCC--------CCCCCCCHHHHHHHCCCHHHHHHHHHCC-CC
Q ss_conf             9999875573879999829---907999999982-999875--------4768981688998709925589978689-99
Q 003477          428 KRTSLPEAKDSFFELTLKS---KLKEWLLERVVE-GSKTTE--------YDVHGQGVIHLCAMLGYTWAILLFSWSG-LS  494 (816)
Q Consensus       428 ~~~~~~~g~t~L~~aa~~~---~l~~~Lv~~Ll~-ga~~n~--------~d~~G~T~LHlAa~~G~~~~v~~LL~~G-a~  494 (816)
                      .+.....|.++|+.++..+   +..  +++.|++ |++++.        .|..|.||||+|+..|+.+++++|+..| ++
T Consensus       228 ~~~~d~~g~t~L~~A~~~~~~~~~~--~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~  305 (373)
T 2fo1_E          228 IEELDRNGMTALMIVAHNEGRDQVA--SAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN  305 (373)
T ss_dssp             TSCCCTTSCCHHHHHHHSCSTTHHH--HHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC
T ss_pred             HHHCCCCCCCHHHHHHHHCCCCHHH--HHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCC
T ss_conf             3223778997999999837834499--99999977997655554445755545888999999809999999999736898


Q ss_pred             CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf             7523589986878999829988899999549999988899988999997999999829999999998610000
Q 003477          495 LDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVA  567 (816)
Q Consensus       495 in~rD~~G~TpLh~Aa~~G~~eiV~lLL~~GA~~~~~td~~~~d~~G~TpL~lA~~~G~~~iv~~Lle~ga~~  567 (816)
                      +|.+|..|+||||+|+..|+.++|++|+++|++++.      +|..|.||+++|+.+|+.+++++|++++++.
T Consensus       306 ~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~------~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          306 KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA------VDATDHTARQLAQANNHHNIVDIFDRCRPER  372 (373)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC------CCSSSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred             CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC
T ss_conf             667698999899999986899999999976998547------7989999999999859888999987337345


Done!