Query 003480
Match_columns 816
No_of_seqs 400 out of 1631
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 00:14:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003480.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003480hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0246 Kinesin-like protein [ 100.0 8E-106 2E-110 886.5 34.3 506 1-543 4-546 (676)
2 KOG0243 Kinesin-like protein [ 100.0 7.9E-78 1.7E-82 706.9 35.7 330 199-546 44-398 (1041)
3 KOG4280 Kinesin-like protein [ 100.0 4.9E-79 1.1E-83 692.1 24.1 333 202-549 3-347 (574)
4 cd01370 KISc_KIP3_like Kinesin 100.0 1.9E-76 4E-81 648.8 34.4 323 205-538 1-338 (338)
5 KOG0245 Kinesin-like protein [ 100.0 2.1E-78 4.6E-83 699.2 18.5 334 203-551 3-361 (1221)
6 cd01367 KISc_KIF2_like Kinesin 100.0 7.8E-76 1.7E-80 639.9 33.7 315 204-536 1-322 (322)
7 cd01373 KISc_KLP2_like Kinesin 100.0 8E-75 1.7E-79 635.7 34.0 314 204-538 1-337 (337)
8 cd01368 KISc_KIF23_like Kinesi 100.0 1.4E-74 3E-79 635.6 34.5 320 205-536 2-345 (345)
9 PLN03188 kinesin-12 family pro 100.0 1.7E-74 3.7E-79 684.0 36.6 321 202-546 96-442 (1320)
10 cd01365 KISc_KIF1A_KIF1B Kines 100.0 1.6E-73 3.4E-78 629.7 35.8 330 204-544 1-355 (356)
11 KOG0240 Kinesin (SMY1 subfamil 100.0 2.2E-74 4.8E-79 639.4 22.0 322 202-546 5-339 (607)
12 KOG0242 Kinesin-like protein [ 100.0 1.1E-73 2.4E-78 669.1 24.1 329 203-550 5-343 (675)
13 cd01371 KISc_KIF3 Kinesin moto 100.0 1.7E-71 3.7E-76 608.4 34.9 319 204-538 1-333 (333)
14 cd01374 KISc_CENP_E Kinesin mo 100.0 2.1E-71 4.5E-76 604.7 33.9 311 205-538 1-321 (321)
15 cd01364 KISc_BimC_Eg5 Kinesin 100.0 3.3E-71 7.1E-76 610.1 35.5 325 204-546 2-351 (352)
16 cd01369 KISc_KHC_KIF5 Kinesin 100.0 5.1E-71 1.1E-75 602.3 34.7 312 204-538 2-325 (325)
17 cd01376 KISc_KID_like Kinesin 100.0 8.4E-71 1.8E-75 599.7 34.4 306 205-536 1-319 (319)
18 cd01375 KISc_KIF9_like Kinesin 100.0 9.9E-71 2.1E-75 602.7 33.4 315 205-536 1-334 (334)
19 cd01372 KISc_KIF4 Kinesin moto 100.0 1.9E-70 4E-75 601.4 33.7 319 205-539 2-341 (341)
20 KOG0241 Kinesin-like protein [ 100.0 6.7E-71 1.4E-75 625.6 21.9 341 203-552 3-365 (1714)
21 cd01366 KISc_C_terminal Kinesi 100.0 4.6E-69 1E-73 587.7 35.6 316 203-541 1-329 (329)
22 KOG0239 Kinesin (KAR3 subfamil 100.0 3.6E-69 7.8E-74 629.3 22.1 334 194-546 304-648 (670)
23 cd00106 KISc Kinesin motor dom 100.0 3.1E-67 6.6E-72 572.1 35.5 316 205-536 1-328 (328)
24 PF00225 Kinesin: Kinesin moto 100.0 1E-67 2.2E-72 577.5 24.9 318 211-538 1-335 (335)
25 smart00129 KISc Kinesin motor, 100.0 3.3E-66 7.3E-71 566.1 35.8 322 205-544 1-334 (335)
26 KOG0247 Kinesin-like protein [ 100.0 7.6E-61 1.7E-65 542.4 34.0 328 201-541 28-439 (809)
27 KOG0244 Kinesin-like protein [ 100.0 3E-60 6.5E-65 551.2 4.2 309 212-547 1-326 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 2.2E-56 4.7E-61 518.2 24.9 317 199-545 17-343 (568)
29 cd01363 Motor_domain Myosin an 100.0 1.9E-45 4E-50 371.8 18.1 173 270-517 8-186 (186)
30 COG5059 KIP1 Kinesin-like prot 97.7 5.7E-07 1.2E-11 106.1 -10.0 248 201-482 302-566 (568)
31 PF07647 SAM_2: SAM domain (St 95.4 0.0087 1.9E-07 50.4 2.1 54 39-92 8-65 (66)
32 COG0556 UvrB Helicase subunit 94.3 0.048 1E-06 63.5 4.7 85 254-344 4-101 (663)
33 KOG0246 Kinesin-like protein [ 94.2 0.081 1.8E-06 61.8 6.3 84 727-810 590-673 (676)
34 PF00308 Bac_DnaA: Bacterial d 92.6 0.03 6.6E-07 58.7 -0.4 50 253-305 3-52 (219)
35 cd00166 SAM Sterile alpha moti 92.3 0.078 1.7E-06 43.5 1.8 54 39-92 6-62 (63)
36 smart00454 SAM Sterile alpha m 90.4 0.16 3.5E-06 42.1 1.8 56 38-93 7-66 (68)
37 PF00536 SAM_1: SAM domain (St 90.2 0.21 4.6E-06 41.8 2.4 55 38-92 6-63 (64)
38 PRK06893 DNA replication initi 88.8 0.2 4.4E-06 52.7 1.5 50 253-308 11-60 (229)
39 COG2805 PilT Tfp pilus assembl 87.7 0.27 5.9E-06 54.1 1.7 30 275-304 113-142 (353)
40 PRK06526 transposase; Provisio 87.4 0.28 6.1E-06 52.8 1.6 44 261-309 77-120 (254)
41 PRK06620 hypothetical protein; 87.3 0.28 6E-06 51.4 1.4 50 252-305 10-62 (214)
42 PRK12377 putative replication 86.2 0.37 8.1E-06 51.8 1.7 51 255-307 71-121 (248)
43 PRK14086 dnaA chromosomal repl 86.0 0.27 5.8E-06 59.1 0.5 53 252-307 282-334 (617)
44 PRK08116 hypothetical protein; 85.0 0.38 8.3E-06 52.1 1.1 52 253-306 80-133 (268)
45 PRK08084 DNA replication initi 84.0 0.58 1.3E-05 49.5 1.9 48 253-306 17-64 (235)
46 PRK14088 dnaA chromosomal repl 83.9 0.42 9.2E-06 55.4 0.9 51 252-306 99-149 (440)
47 PRK09087 hypothetical protein; 83.2 0.66 1.4E-05 49.0 2.0 47 253-305 16-62 (226)
48 PRK05642 DNA replication initi 82.7 0.69 1.5E-05 49.0 1.8 51 253-306 14-64 (234)
49 TIGR00362 DnaA chromosomal rep 82.3 0.57 1.2E-05 53.4 1.1 50 253-305 105-154 (405)
50 PRK07952 DNA replication prote 81.7 0.69 1.5E-05 49.6 1.4 51 254-306 68-118 (244)
51 PRK00149 dnaA chromosomal repl 81.7 0.59 1.3E-05 54.2 1.0 51 253-306 117-167 (450)
52 COG1474 CDC6 Cdc6-related prot 79.9 2.4 5.2E-05 48.2 5.0 26 279-304 33-59 (366)
53 TIGR02928 orc1/cdc6 family rep 79.7 1.1 2.3E-05 49.9 2.2 27 278-304 30-57 (365)
54 PRK08181 transposase; Validate 79.6 0.97 2.1E-05 49.2 1.7 24 284-309 105-128 (269)
55 cd00009 AAA The AAA+ (ATPases 79.4 1.1 2.4E-05 41.2 1.8 27 278-304 10-36 (151)
56 PRK14087 dnaA chromosomal repl 78.8 1.1 2.3E-05 52.3 1.8 49 254-305 111-159 (450)
57 COG2804 PulE Type II secretory 78.8 0.91 2E-05 53.2 1.2 30 276-305 247-276 (500)
58 TIGR03420 DnaA_homol_Hda DnaA 78.7 1.3 2.7E-05 45.7 2.1 47 253-305 10-56 (226)
59 PRK08903 DnaA regulatory inact 78.5 1.3 2.7E-05 46.2 2.1 49 252-305 12-60 (227)
60 COG1222 RPT1 ATP-dependent 26S 78.0 2.8 6.2E-05 47.4 4.7 115 206-321 95-242 (406)
61 PF04851 ResIII: Type III rest 77.9 1.1 2.3E-05 43.8 1.3 29 278-306 15-44 (184)
62 PRK00411 cdc6 cell division co 77.2 1.6 3.4E-05 49.2 2.5 26 279-304 46-72 (394)
63 PRK06835 DNA replication prote 76.5 1.3 2.7E-05 49.7 1.5 38 268-307 166-203 (329)
64 PRK08727 hypothetical protein; 76.2 1 2.2E-05 47.6 0.7 19 288-306 42-60 (233)
65 PRK08939 primosomal protein Dn 76.1 1.2 2.5E-05 49.5 1.0 52 256-308 125-177 (306)
66 COG0593 DnaA ATPase involved i 74.3 1.3 2.9E-05 50.9 0.9 51 252-305 81-131 (408)
67 cd00046 DEXDc DEAD-like helica 74.1 1.3 2.8E-05 40.2 0.7 16 290-305 3-18 (144)
68 TIGR00631 uvrb excinuclease AB 73.0 3.2 7E-05 50.7 3.9 83 255-343 2-97 (655)
69 PF13245 AAA_19: Part of AAA d 71.9 2 4.3E-05 37.9 1.3 25 279-304 3-27 (76)
70 smart00053 DYNc Dynamin, GTPas 70.8 11 0.00024 40.5 6.9 53 372-449 85-137 (240)
71 PF01935 DUF87: Domain of unkn 70.6 1.6 3.6E-05 45.3 0.6 17 289-305 25-41 (229)
72 PRK12422 chromosomal replicati 70.0 2.7 5.8E-05 49.0 2.2 52 252-306 105-160 (445)
73 PF01695 IstB_IS21: IstB-like 69.8 1.5 3.3E-05 44.6 0.1 21 287-307 47-67 (178)
74 PRK09183 transposase/IS protei 69.7 2.5 5.3E-05 45.6 1.7 19 289-307 104-122 (259)
75 TIGR02538 type_IV_pilB type IV 69.6 2.1 4.5E-05 51.3 1.2 28 278-305 307-334 (564)
76 KOG0727 26S proteasome regulat 69.4 5.4 0.00012 43.3 4.1 115 207-321 100-246 (408)
77 COG1484 DnaC DNA replication p 69.2 2.2 4.8E-05 46.0 1.2 42 264-308 85-126 (254)
78 TIGR02533 type_II_gspE general 69.1 2.4 5.2E-05 50.0 1.5 28 278-305 233-260 (486)
79 smart00382 AAA ATPases associa 68.9 2 4.3E-05 38.9 0.7 18 288-305 3-20 (148)
80 PF13401 AAA_22: AAA domain; P 68.9 1.5 3.4E-05 40.8 -0.1 27 287-317 4-30 (131)
81 PRK10436 hypothetical protein; 68.8 2.4 5.1E-05 49.7 1.4 27 279-305 210-236 (462)
82 PRK06921 hypothetical protein; 67.5 2.7 5.9E-05 45.5 1.5 37 269-306 97-136 (266)
83 PF12846 AAA_10: AAA-like doma 67.5 2.1 4.6E-05 45.3 0.6 19 287-305 1-19 (304)
84 TIGR01420 pilT_fam pilus retra 66.5 2.8 6E-05 47.0 1.3 27 279-305 114-140 (343)
85 PF00270 DEAD: DEAD/DEAH box h 66.4 2.7 5.8E-05 40.8 1.1 24 279-304 8-31 (169)
86 PF05673 DUF815: Protein of un 65.9 3.2 7E-05 44.7 1.6 127 256-407 25-154 (249)
87 PF13604 AAA_30: AAA domain; P 65.9 2.8 6E-05 43.2 1.1 26 279-304 10-35 (196)
88 PF00437 T2SE: Type II/IV secr 65.8 2.3 5E-05 45.5 0.5 18 287-304 127-144 (270)
89 cd01131 PilT Pilus retraction 65.6 2.5 5.5E-05 43.5 0.7 18 288-305 2-19 (198)
90 PF01637 Arch_ATPase: Archaeal 65.4 2.5 5.5E-05 42.8 0.7 29 276-304 9-37 (234)
91 PTZ00454 26S protease regulato 65.1 3.6 7.7E-05 47.3 1.9 52 253-304 140-196 (398)
92 KOG0989 Replication factor C, 64.5 5.2 0.00011 44.5 2.9 35 279-317 49-83 (346)
93 TIGR02525 plasmid_TraJ plasmid 64.4 3.3 7.1E-05 47.2 1.4 20 286-305 148-167 (372)
94 TIGR01242 26Sp45 26S proteasom 64.0 5.7 0.00012 44.7 3.2 51 254-304 118-173 (364)
95 TIGR02524 dot_icm_DotB Dot/Icm 64.0 3.4 7.4E-05 46.8 1.4 21 285-305 132-152 (358)
96 COG5008 PilU Tfp pilus assembl 63.7 4.4 9.5E-05 44.3 2.1 30 275-304 115-144 (375)
97 cd01129 PulE-GspE PulE/GspE Th 63.5 3.7 8E-05 44.5 1.5 27 279-305 72-98 (264)
98 cd01378 MYSc_type_I Myosin mot 62.9 22 0.00047 43.8 8.1 35 269-304 68-103 (674)
99 TIGR03015 pepcterm_ATPase puta 62.8 4.7 0.0001 42.6 2.2 22 283-304 39-60 (269)
100 PRK13894 conjugal transfer ATP 61.7 3.7 7.9E-05 45.9 1.1 28 277-305 139-166 (319)
101 KOG2543 Origin recognition com 61.1 4.2 9.1E-05 46.4 1.4 38 289-341 32-69 (438)
102 PF00910 RNA_helicase: RNA hel 60.9 4.9 0.00011 37.2 1.6 26 290-319 1-26 (107)
103 cd00124 MYSc Myosin motor doma 60.1 29 0.00062 42.8 8.4 36 268-304 67-103 (679)
104 PTZ00112 origin recognition co 59.8 6.2 0.00013 49.6 2.7 20 285-304 779-798 (1164)
105 PF00063 Myosin_head: Myosin h 59.8 9.4 0.0002 46.8 4.3 35 269-304 67-102 (689)
106 PLN00020 ribulose bisphosphate 59.8 9.9 0.00022 43.6 4.1 53 252-304 109-165 (413)
107 PF13479 AAA_24: AAA domain 59.4 4 8.7E-05 42.5 0.9 19 287-305 3-21 (213)
108 smart00242 MYSc Myosin. Large 59.1 27 0.00059 43.0 8.0 36 268-304 73-109 (677)
109 PF13191 AAA_16: AAA ATPase do 58.5 3.5 7.7E-05 40.6 0.3 28 277-304 14-41 (185)
110 cd01382 MYSc_type_VI Myosin mo 58.2 35 0.00076 42.4 8.7 34 270-304 74-108 (717)
111 TIGR02782 TrbB_P P-type conjug 58.1 4.6 0.0001 44.6 1.1 28 277-305 123-150 (299)
112 PF00004 AAA: ATPase family as 57.9 3.7 8.1E-05 37.9 0.3 15 290-304 1-15 (132)
113 cd01384 MYSc_type_XI Myosin mo 57.3 31 0.00068 42.5 8.1 21 284-304 85-105 (674)
114 PRK12402 replication factor C 57.1 6.1 0.00013 43.2 1.9 21 285-305 34-54 (337)
115 PF13207 AAA_17: AAA domain; P 56.9 3.9 8.4E-05 37.8 0.2 16 289-304 1-16 (121)
116 cd01377 MYSc_type_II Myosin mo 55.8 40 0.00086 41.8 8.6 36 268-304 72-108 (693)
117 PF13086 AAA_11: AAA domain; P 55.7 5 0.00011 40.6 0.9 17 289-305 19-35 (236)
118 PF00448 SRP54: SRP54-type pro 55.3 4.2 9.1E-05 42.1 0.2 17 289-305 3-19 (196)
119 PF05970 PIF1: PIF1-like helic 54.9 6.7 0.00015 44.3 1.8 36 265-304 4-39 (364)
120 PTZ00361 26 proteosome regulat 54.7 8.8 0.00019 44.8 2.7 16 289-304 219-234 (438)
121 PRK03992 proteasome-activating 54.0 8.5 0.00018 44.0 2.4 51 254-304 127-182 (389)
122 PF06309 Torsin: Torsin; Inte 53.0 8.4 0.00018 37.6 1.8 28 287-318 52-80 (127)
123 cd01380 MYSc_type_V Myosin mot 53.0 42 0.00091 41.5 8.2 21 284-304 83-103 (691)
124 TIGR00635 ruvB Holliday juncti 52.9 6.8 0.00015 42.5 1.4 43 262-305 4-48 (305)
125 smart00487 DEXDc DEAD-like hel 52.2 8.1 0.00018 37.4 1.7 18 288-305 25-42 (201)
126 COG1201 Lhr Lhr-like helicases 51.6 15 0.00033 45.9 4.2 25 279-305 31-55 (814)
127 cd01130 VirB11-like_ATPase Typ 50.7 7.8 0.00017 39.3 1.3 28 276-304 15-42 (186)
128 PRK13833 conjugal transfer pro 50.6 7.4 0.00016 43.6 1.2 28 277-305 135-162 (323)
129 TIGR01817 nifA Nif-specific re 50.2 7.9 0.00017 45.9 1.4 45 254-304 192-236 (534)
130 COG1223 Predicted ATPase (AAA+ 50.1 8.7 0.00019 42.1 1.6 18 287-304 151-168 (368)
131 PHA02544 44 clamp loader, smal 50.1 8.2 0.00018 42.1 1.4 22 284-305 39-61 (316)
132 PF00580 UvrD-helicase: UvrD/R 49.3 6.8 0.00015 41.8 0.7 19 286-304 12-30 (315)
133 PF01580 FtsK_SpoIIIE: FtsK/Sp 49.2 5.7 0.00012 40.6 0.1 17 289-305 40-56 (205)
134 PF02562 PhoH: PhoH-like prote 48.9 9.2 0.0002 40.2 1.5 19 286-304 18-36 (205)
135 TIGR03499 FlhF flagellar biosy 48.6 6.4 0.00014 43.0 0.3 20 289-308 196-215 (282)
136 PHA00729 NTP-binding motif con 47.9 10 0.00023 40.4 1.7 33 276-308 6-38 (226)
137 PRK13342 recombination factor 47.5 9.1 0.0002 44.0 1.4 40 265-305 15-54 (413)
138 PRK13900 type IV secretion sys 46.4 9.5 0.00021 42.8 1.3 28 276-304 150-177 (332)
139 PRK13851 type IV secretion sys 46.1 8.2 0.00018 43.6 0.7 28 277-305 153-180 (344)
140 PF13671 AAA_33: AAA domain; P 46.0 7.6 0.00016 36.8 0.3 15 290-304 2-16 (143)
141 PF07728 AAA_5: AAA domain (dy 45.5 7.1 0.00015 37.1 0.1 15 290-304 2-16 (139)
142 PRK11448 hsdR type I restricti 45.5 9.1 0.0002 49.7 1.0 29 278-307 425-453 (1123)
143 PF07724 AAA_2: AAA domain (Cd 44.9 8.4 0.00018 39.0 0.5 17 288-304 4-20 (171)
144 PTZ00424 helicase 45; Provisio 44.9 10 0.00022 42.8 1.1 24 279-304 59-82 (401)
145 PF11594 Med28: Mediator compl 44.9 2.3E+02 0.005 27.0 9.8 66 746-812 16-81 (106)
146 PRK11776 ATP-dependent RNA hel 44.8 11 0.00024 43.7 1.5 24 279-304 35-58 (460)
147 KOG0729 26S proteasome regulat 44.1 25 0.00055 38.6 3.9 34 288-321 212-268 (435)
148 PF05496 RuvB_N: Holliday junc 44.0 19 0.00042 38.6 3.0 43 261-304 23-67 (233)
149 PF13238 AAA_18: AAA domain; P 43.1 8.2 0.00018 35.5 0.1 16 290-305 1-16 (129)
150 cd00268 DEADc DEAD-box helicas 43.0 13 0.00028 37.5 1.5 23 280-304 31-53 (203)
151 PF07693 KAP_NTPase: KAP famil 42.9 13 0.00029 40.4 1.7 20 285-304 18-37 (325)
152 PRK06547 hypothetical protein; 42.9 14 0.0003 37.5 1.7 27 278-304 6-32 (172)
153 PRK12723 flagellar biosynthesi 42.9 9.5 0.00021 43.8 0.6 19 287-305 174-192 (388)
154 PF06414 Zeta_toxin: Zeta toxi 42.6 11 0.00023 38.7 0.8 19 286-304 14-32 (199)
155 KOG0651 26S proteasome regulat 42.4 11 0.00025 42.1 1.1 53 252-304 126-183 (388)
156 TIGR00618 sbcc exonuclease Sbc 41.6 18 0.00038 46.7 2.7 17 288-304 27-43 (1042)
157 PRK13764 ATPase; Provisional 41.5 12 0.00026 45.4 1.1 20 287-306 257-276 (602)
158 COG4962 CpaF Flp pilus assembl 41.1 12 0.00027 42.2 1.1 24 280-304 167-190 (355)
159 KOG1118 Lysophosphatidic acid 40.9 79 0.0017 35.3 7.0 54 736-798 175-237 (366)
160 TIGR02881 spore_V_K stage V sp 40.6 11 0.00024 40.4 0.6 18 288-305 43-60 (261)
161 TIGR02903 spore_lon_C ATP-depe 40.6 13 0.00029 45.1 1.4 42 255-304 151-192 (615)
162 PRK11192 ATP-dependent RNA hel 40.6 13 0.00029 42.5 1.3 24 279-304 32-55 (434)
163 PRK04837 ATP-dependent RNA hel 39.2 14 0.00031 42.3 1.2 24 279-304 39-62 (423)
164 PRK11331 5-methylcytosine-spec 39.2 15 0.00033 43.0 1.5 28 502-533 319-346 (459)
165 PLN03025 replication factor C 38.8 18 0.00039 40.0 1.9 18 288-305 35-52 (319)
166 TIGR00348 hsdR type I site-spe 38.6 18 0.00039 44.4 2.0 31 274-305 246-281 (667)
167 PRK00080 ruvB Holliday junctio 38.4 16 0.00034 40.6 1.4 40 265-305 28-69 (328)
168 PRK10590 ATP-dependent RNA hel 38.3 16 0.00035 42.4 1.6 24 279-304 32-55 (456)
169 PRK00440 rfc replication facto 38.2 18 0.00039 39.1 1.8 21 284-304 35-55 (319)
170 PRK14722 flhF flagellar biosyn 38.2 14 0.00029 42.4 0.9 20 287-306 137-156 (374)
171 PF05729 NACHT: NACHT domain 38.2 14 0.00031 35.3 0.9 16 289-304 2-17 (166)
172 PF03668 ATP_bind_2: P-loop AT 37.9 38 0.00083 37.4 4.2 33 289-321 3-46 (284)
173 PF10146 zf-C4H2: Zinc finger- 37.6 1.9E+02 0.0041 31.1 9.2 63 734-799 28-93 (230)
174 PF11932 DUF3450: Protein of u 37.3 2.2E+02 0.0049 30.5 9.9 77 727-804 21-101 (251)
175 TIGR01618 phage_P_loop phage n 37.3 14 0.0003 39.2 0.8 21 287-307 12-32 (220)
176 PF03215 Rad17: Rad17 cell cyc 37.2 18 0.00038 43.3 1.6 30 275-304 31-62 (519)
177 KOG2373 Predicted mitochondria 37.2 22 0.00048 40.3 2.3 27 277-304 261-290 (514)
178 PRK15429 formate hydrogenlyase 37.2 15 0.00033 45.0 1.2 116 254-387 372-498 (686)
179 PF06048 DUF927: Domain of unk 36.8 20 0.00044 39.2 1.9 32 272-304 179-210 (286)
180 CHL00081 chlI Mg-protoporyphyr 36.7 11 0.00023 42.8 -0.3 44 253-304 12-55 (350)
181 COG1419 FlhF Flagellar GTP-bin 36.3 22 0.00048 41.0 2.2 19 287-305 203-221 (407)
182 KOG0340 ATP-dependent RNA heli 36.3 30 0.00066 39.3 3.1 26 277-304 36-61 (442)
183 KOG1514 Origin recognition com 36.2 41 0.00089 41.4 4.4 42 276-321 409-452 (767)
184 PRK13341 recombination factor 35.7 19 0.0004 44.8 1.6 22 284-305 49-70 (725)
185 cd01120 RecA-like_NTPases RecA 35.6 15 0.00031 34.9 0.5 16 290-305 2-17 (165)
186 PRK10536 hypothetical protein; 34.8 21 0.00046 38.9 1.6 41 254-304 51-91 (262)
187 KOG3859 Septins (P-loop GTPase 34.6 19 0.00042 39.6 1.3 28 277-304 31-59 (406)
188 PF02456 Adeno_IVa2: Adenoviru 34.6 15 0.00033 41.0 0.5 15 290-304 90-104 (369)
189 TIGR02237 recomb_radB DNA repa 34.4 20 0.00044 36.6 1.3 25 280-304 2-29 (209)
190 PF10236 DAP3: Mitochondrial r 33.9 22 0.00047 39.5 1.6 24 282-305 18-41 (309)
191 PF00158 Sigma54_activat: Sigm 33.9 7.6 0.00017 39.2 -1.8 94 284-389 19-123 (168)
192 TIGR02996 rpt_mate_G_obs repea 33.3 53 0.0012 26.2 3.2 27 13-49 5-31 (42)
193 PRK05022 anaerobic nitric oxid 33.2 19 0.00041 42.6 1.1 114 256-387 185-309 (509)
194 PF12775 AAA_7: P-loop contain 33.1 20 0.00044 39.0 1.2 26 278-304 25-50 (272)
195 TIGR02788 VirB11 P-type DNA tr 33.0 25 0.00054 38.9 1.9 29 275-304 133-161 (308)
196 COG2256 MGS1 ATPase related to 32.8 23 0.00051 40.8 1.6 39 265-304 27-65 (436)
197 PRK10416 signal recognition pa 32.7 27 0.00058 39.1 2.1 18 288-305 115-132 (318)
198 KOG0739 AAA+-type ATPase [Post 32.6 30 0.00064 38.8 2.3 50 272-321 147-223 (439)
199 PRK04195 replication factor C 32.5 21 0.00045 42.0 1.2 30 275-304 26-56 (482)
200 cd01127 TrwB Bacterial conjuga 32.5 15 0.00032 42.3 -0.0 19 287-305 42-60 (410)
201 TIGR00614 recQ_fam ATP-depende 32.4 24 0.00052 41.2 1.7 25 278-304 19-43 (470)
202 cd00632 Prefoldin_beta Prefold 32.2 2.8E+02 0.006 25.7 8.4 36 770-805 67-102 (105)
203 cd01383 MYSc_type_VIII Myosin 32.1 32 0.00069 42.5 2.7 35 269-304 74-109 (677)
204 COG1219 ClpX ATP-dependent pro 32.0 20 0.00044 40.3 0.9 19 286-304 96-114 (408)
205 TIGR00376 DNA helicase, putati 31.8 19 0.00041 44.0 0.8 17 289-305 175-191 (637)
206 PF00735 Septin: Septin; Inte 31.5 14 0.0003 40.6 -0.5 21 284-304 1-21 (281)
207 PF13173 AAA_14: AAA domain 31.4 20 0.00043 34.0 0.7 16 289-304 4-19 (128)
208 PF03193 DUF258: Protein of un 31.4 14 0.0003 37.5 -0.4 64 279-345 29-93 (161)
209 PRK11634 ATP-dependent RNA hel 31.4 22 0.00048 43.3 1.3 25 278-304 36-60 (629)
210 PRK06067 flagellar accessory p 31.2 29 0.00063 36.3 1.9 31 274-304 9-42 (234)
211 cd01385 MYSc_type_IX Myosin mo 31.1 32 0.00069 42.6 2.5 35 269-304 76-111 (692)
212 cd01123 Rad51_DMC1_radA Rad51_ 30.9 25 0.00054 36.5 1.4 30 275-304 4-36 (235)
213 KOG4657 Uncharacterized conser 30.7 4.5E+02 0.0097 28.4 10.3 73 728-804 30-110 (246)
214 cd01381 MYSc_type_VII Myosin m 30.7 34 0.00073 42.2 2.6 35 269-304 68-103 (671)
215 cd02021 GntK Gluconate kinase 30.6 20 0.00043 34.6 0.5 15 290-304 2-16 (150)
216 TIGR02640 gas_vesic_GvpN gas v 30.3 30 0.00064 37.3 1.9 27 276-304 12-38 (262)
217 PRK04537 ATP-dependent RNA hel 30.3 25 0.00054 42.4 1.4 24 279-304 40-63 (572)
218 PRK00771 signal recognition pa 30.1 40 0.00087 39.4 3.0 19 287-305 95-113 (437)
219 PF13555 AAA_29: P-loop contai 30.1 21 0.00046 30.5 0.6 15 290-304 26-40 (62)
220 KOG1803 DNA helicase [Replicat 30.1 26 0.00056 42.3 1.4 18 288-305 202-219 (649)
221 cd01387 MYSc_type_XV Myosin mo 29.9 35 0.00076 42.1 2.6 35 269-304 69-104 (677)
222 PRK05703 flhF flagellar biosyn 29.9 21 0.00046 41.5 0.7 19 289-307 223-241 (424)
223 TIGR03689 pup_AAA proteasome A 29.9 15 0.00032 43.8 -0.6 16 289-304 218-233 (512)
224 PF05597 Phasin: Poly(hydroxya 29.8 4.8E+02 0.01 25.8 9.9 77 726-804 38-126 (132)
225 PRK09361 radB DNA repair and r 29.7 29 0.00063 36.0 1.6 31 274-304 7-40 (225)
226 TIGR01241 FtsH_fam ATP-depende 29.5 21 0.00045 42.1 0.5 18 288-305 89-106 (495)
227 KOG0735 AAA+-type ATPase [Post 29.4 33 0.00071 42.3 2.1 35 287-321 701-758 (952)
228 PRK00131 aroK shikimate kinase 29.4 24 0.00052 34.3 0.9 17 288-304 5-21 (175)
229 PRK01297 ATP-dependent RNA hel 29.3 25 0.00055 41.0 1.2 25 278-304 117-141 (475)
230 COG1125 OpuBA ABC-type proline 29.1 22 0.00048 39.0 0.6 56 476-541 145-212 (309)
231 KOG2669 Regulator of nuclear m 29.1 1.5E+02 0.0033 33.4 7.0 28 789-816 214-241 (325)
232 KOG0726 26S proteasome regulat 28.8 51 0.0011 36.9 3.2 55 289-347 221-298 (440)
233 PHA02244 ATPase-like protein 28.7 37 0.0008 39.0 2.3 19 284-304 118-136 (383)
234 PRK14974 cell division protein 28.7 45 0.00098 37.7 3.0 18 287-304 140-157 (336)
235 PRK11608 pspF phage shock prot 28.7 28 0.00061 38.8 1.4 20 285-304 27-46 (326)
236 TIGR03819 heli_sec_ATPase heli 28.3 29 0.00063 39.1 1.4 29 275-304 167-195 (340)
237 TIGR01359 UMP_CMP_kin_fam UMP- 28.2 25 0.00054 35.0 0.8 15 290-304 2-16 (183)
238 KOG2228 Origin recognition com 28.2 1.2E+02 0.0026 34.6 6.1 118 262-390 28-194 (408)
239 KOG4384 Uncharacterized SAM do 28.0 31 0.00068 38.9 1.5 60 36-95 214-277 (361)
240 cd01393 recA_like RecA is a b 27.9 35 0.00077 35.1 1.9 31 275-305 4-37 (226)
241 KOG0926 DEAH-box RNA helicase 27.8 32 0.0007 42.8 1.7 19 286-304 270-288 (1172)
242 TIGR02639 ClpA ATP-dependent C 27.8 25 0.00055 43.6 0.9 35 277-311 193-227 (731)
243 TIGR02688 conserved hypothetic 27.6 22 0.00047 41.5 0.3 32 277-310 201-232 (449)
244 cd01850 CDC_Septin CDC/Septin. 27.4 26 0.00057 38.2 0.8 21 284-304 1-21 (276)
245 PRK11388 DNA-binding transcrip 27.4 30 0.00064 42.1 1.4 45 254-304 321-365 (638)
246 PF06745 KaiC: KaiC; InterPro 27.3 34 0.00073 35.5 1.6 29 276-304 5-36 (226)
247 PRK05580 primosome assembly pr 27.1 30 0.00064 42.7 1.3 37 261-304 143-179 (679)
248 KOG0730 AAA+-type ATPase [Post 26.9 42 0.0009 41.0 2.4 34 288-321 469-525 (693)
249 PRK15424 propionate catabolism 26.9 29 0.00063 41.6 1.2 45 254-304 215-259 (538)
250 PF04102 SlyX: SlyX; InterPro 26.8 1.4E+02 0.0029 26.0 5.0 37 771-807 16-52 (69)
251 PHA01747 putative ATP-dependen 26.7 29 0.00063 39.9 1.0 94 270-389 173-272 (425)
252 KOG0953 Mitochondrial RNA heli 26.6 75 0.0016 38.3 4.3 32 290-321 194-237 (700)
253 PRK06995 flhF flagellar biosyn 26.5 26 0.00057 41.5 0.6 18 288-305 257-274 (484)
254 cd00464 SK Shikimate kinase (S 26.5 27 0.00059 33.4 0.7 16 289-304 1-16 (154)
255 PRK09270 nucleoside triphospha 26.5 44 0.00096 35.0 2.3 36 269-304 14-50 (229)
256 PF13476 AAA_23: AAA domain; P 26.5 24 0.00053 34.9 0.4 17 288-304 20-36 (202)
257 PRK02119 hypothetical protein; 26.4 1.8E+02 0.004 25.6 5.8 36 771-806 21-56 (73)
258 PHA02653 RNA helicase NPH-II; 26.3 37 0.0008 41.9 1.9 24 278-303 172-195 (675)
259 cd01394 radB RadB. The archaea 26.2 38 0.00081 34.9 1.7 28 277-304 6-36 (218)
260 TIGR02322 phosphon_PhnN phosph 26.2 27 0.00058 34.7 0.6 16 289-304 3-18 (179)
261 COG3829 RocR Transcriptional r 26.1 35 0.00077 40.8 1.6 43 252-300 239-281 (560)
262 PLN00206 DEAD-box ATP-dependen 26.1 39 0.00086 40.1 2.1 24 279-304 152-175 (518)
263 TIGR01243 CDC48 AAA family ATP 26.1 20 0.00044 44.3 -0.3 51 254-304 174-229 (733)
264 TIGR02173 cyt_kin_arch cytidyl 26.1 37 0.00081 33.1 1.6 16 289-304 2-17 (171)
265 PRK11889 flhF flagellar biosyn 26.0 45 0.00097 38.9 2.3 18 288-305 242-259 (436)
266 PRK07261 topology modulation p 26.0 28 0.00062 34.9 0.7 15 290-304 3-17 (171)
267 PRK00736 hypothetical protein; 25.8 2E+02 0.0043 25.0 5.8 37 771-807 17-53 (68)
268 PRK00295 hypothetical protein; 25.8 2E+02 0.0044 25.0 5.8 37 771-807 17-53 (68)
269 TIGR02746 TraC-F-type type-IV 25.8 27 0.00058 43.5 0.6 19 287-305 430-448 (797)
270 cd01126 TraG_VirD4 The TraG/Tr 25.6 34 0.00073 38.8 1.3 15 290-304 2-16 (384)
271 PRK04328 hypothetical protein; 25.6 40 0.00086 36.1 1.8 29 275-303 8-39 (249)
272 PF05130 FlgN: FlgN protein; 25.6 2.2E+02 0.0047 26.6 6.7 34 731-766 22-55 (143)
273 PRK05986 cob(I)alamin adenolsy 25.5 25 0.00055 36.6 0.3 27 287-313 22-48 (191)
274 PF02478 Pneumo_phosprot: Pneu 25.4 1.8E+02 0.0038 31.6 6.3 59 725-783 198-257 (279)
275 TIGR01360 aden_kin_iso1 adenyl 25.3 36 0.00079 33.7 1.4 16 289-304 5-20 (188)
276 CHL00181 cbbX CbbX; Provisiona 25.3 28 0.0006 38.3 0.5 15 290-304 62-76 (287)
277 TIGR02880 cbbX_cfxQ probable R 25.2 27 0.00059 38.1 0.5 16 289-304 60-75 (284)
278 PRK00846 hypothetical protein; 25.1 2E+02 0.0044 25.8 5.8 37 771-807 25-61 (77)
279 PRK11057 ATP-dependent DNA hel 25.1 35 0.00077 41.3 1.4 24 279-304 34-57 (607)
280 TIGR01313 therm_gnt_kin carboh 24.8 26 0.00057 34.3 0.2 15 290-304 1-15 (163)
281 PRK13700 conjugal transfer pro 24.7 24 0.00051 43.7 -0.1 16 290-305 188-203 (732)
282 cd01386 MYSc_type_XVIII Myosin 24.7 47 0.001 41.6 2.4 35 269-304 68-103 (767)
283 cd01428 ADK Adenylate kinase ( 24.7 31 0.00068 34.4 0.8 15 290-304 2-16 (194)
284 PRK02793 phi X174 lysis protei 24.6 2.1E+02 0.0046 25.2 5.8 37 771-807 20-56 (72)
285 TIGR03158 cas3_cyano CRISPR-as 24.5 40 0.00087 38.0 1.6 25 280-304 7-31 (357)
286 PRK08118 topology modulation p 24.4 32 0.00069 34.5 0.8 15 290-304 4-18 (167)
287 PF10046 BLOC1_2: Biogenesis o 24.2 5.7E+02 0.012 23.6 9.5 27 740-766 5-31 (99)
288 TIGR03881 KaiC_arch_4 KaiC dom 24.2 42 0.00091 34.8 1.6 28 277-304 7-37 (229)
289 PF10412 TrwB_AAD_bind: Type I 24.1 20 0.00043 41.0 -0.9 19 287-305 15-33 (386)
290 KOG0924 mRNA splicing factor A 24.0 1.8E+02 0.0039 36.1 6.8 20 285-304 369-388 (1042)
291 TIGR02329 propionate_PrpR prop 23.9 32 0.00069 41.2 0.7 45 254-304 208-252 (526)
292 TIGR01389 recQ ATP-dependent D 23.8 41 0.00089 40.5 1.7 25 278-304 21-45 (591)
293 COG0630 VirB11 Type IV secreto 23.8 29 0.00064 38.6 0.4 20 286-305 142-161 (312)
294 TIGR03744 traC_PFL_4706 conjug 23.7 32 0.00069 43.8 0.7 21 286-306 474-494 (893)
295 PRK13182 racA polar chromosome 23.7 5.3E+02 0.011 26.6 9.4 62 738-811 88-149 (175)
296 COG4096 HsdR Type I site-speci 23.6 41 0.0009 42.0 1.6 33 274-307 173-205 (875)
297 cd01379 MYSc_type_III Myosin m 23.5 53 0.0011 40.4 2.5 21 284-304 83-103 (653)
298 KOG0335 ATP-dependent RNA heli 23.3 36 0.00079 40.1 1.0 23 280-304 106-128 (482)
299 PF00931 NB-ARC: NB-ARC domain 23.2 43 0.00094 35.6 1.5 30 275-304 5-36 (287)
300 KOG0652 26S proteasome regulat 23.0 58 0.0013 35.9 2.4 99 205-304 114-222 (424)
301 cd00820 PEPCK_HprK Phosphoenol 22.9 36 0.00079 32.2 0.8 17 288-304 16-32 (107)
302 COG5019 CDC3 Septin family pro 22.8 41 0.0009 38.4 1.3 21 284-304 20-40 (373)
303 cd01983 Fer4_NifH The Fer4_Nif 22.8 36 0.00077 29.1 0.6 16 290-305 2-17 (99)
304 TIGR00064 ftsY signal recognit 22.7 37 0.00081 37.0 0.9 18 288-305 73-90 (272)
305 TIGR02236 recomb_radA DNA repa 22.7 45 0.00098 36.6 1.6 29 276-304 81-112 (310)
306 PRK11664 ATP-dependent RNA hel 22.6 46 0.001 41.9 1.8 32 270-304 6-37 (812)
307 PRK06696 uridine kinase; Valid 22.5 53 0.0012 34.3 2.0 29 276-304 8-39 (223)
308 cd02020 CMPK Cytidine monophos 22.5 37 0.0008 32.1 0.8 15 290-304 2-16 (147)
309 TIGR03877 thermo_KaiC_1 KaiC d 22.4 51 0.0011 34.8 1.9 28 276-303 7-37 (237)
310 PRK12726 flagellar biosynthesi 22.2 36 0.00079 39.3 0.7 20 288-307 207-226 (407)
311 cd02023 UMPK Uridine monophosp 22.2 34 0.00073 34.8 0.4 15 290-304 2-16 (198)
312 cd02025 PanK Pantothenate kina 22.2 28 0.00061 36.6 -0.2 12 293-304 5-16 (220)
313 TIGR02030 BchI-ChlI magnesium 22.1 35 0.00076 38.5 0.6 29 276-304 14-42 (337)
314 PF13118 DUF3972: Protein of u 22.1 3.6E+02 0.0077 26.6 7.2 59 726-798 66-124 (126)
315 TIGR00231 small_GTP small GTP- 22.0 34 0.00075 31.4 0.4 16 289-304 3-18 (161)
316 KOG3976 Mitochondrial F1F0-ATP 21.8 5.4E+02 0.012 28.0 9.1 71 726-797 124-197 (247)
317 PF10923 DUF2791: P-loop Domai 21.8 52 0.0011 38.3 1.9 29 276-304 38-66 (416)
318 PRK14127 cell division protein 21.8 2.8E+02 0.006 26.6 6.4 42 765-806 19-63 (109)
319 CHL00195 ycf46 Ycf46; Provisio 21.7 37 0.0008 40.3 0.7 17 288-304 260-276 (489)
320 cd00561 CobA_CobO_BtuR ATP:cor 21.6 33 0.00071 34.7 0.2 26 288-313 3-28 (159)
321 PRK14721 flhF flagellar biosyn 21.5 38 0.00082 39.5 0.7 19 287-305 191-209 (420)
322 TIGR01351 adk adenylate kinase 21.4 45 0.00097 34.4 1.2 15 290-304 2-16 (210)
323 PRK04406 hypothetical protein; 21.4 2.6E+02 0.0057 24.9 5.8 36 771-806 23-58 (75)
324 cd01124 KaiC KaiC is a circadi 21.4 40 0.00086 33.4 0.7 15 290-304 2-16 (187)
325 PRK14961 DNA polymerase III su 21.4 52 0.0011 37.2 1.8 41 256-304 14-55 (363)
326 PF08477 Miro: Miro-like prote 21.4 35 0.00075 31.1 0.3 15 290-304 2-16 (119)
327 PRK06217 hypothetical protein; 21.3 39 0.00084 34.1 0.7 15 290-304 4-18 (183)
328 PRK08233 hypothetical protein; 21.3 39 0.00085 33.3 0.7 15 290-304 6-20 (182)
329 PRK04296 thymidine kinase; Pro 21.2 29 0.00063 35.5 -0.2 21 289-309 4-24 (190)
330 PRK14723 flhF flagellar biosyn 21.2 39 0.00084 42.2 0.8 24 739-762 673-696 (767)
331 PF05130 FlgN: FlgN protein; 21.2 6.2E+02 0.014 23.5 8.9 51 741-800 11-61 (143)
332 TIGR02397 dnaX_nterm DNA polym 21.1 53 0.0011 36.3 1.7 35 266-304 18-53 (355)
333 PF10157 DUF2365: Uncharacteri 21.1 6.1E+02 0.013 25.6 9.0 72 737-808 69-147 (149)
334 PRK04325 hypothetical protein; 21.1 2.7E+02 0.0059 24.6 5.8 37 771-807 21-57 (74)
335 PRK11034 clpA ATP-dependent Cl 21.0 41 0.00088 42.1 0.9 46 256-309 184-229 (758)
336 PRK14531 adenylate kinase; Pro 20.9 41 0.0009 33.9 0.8 16 289-304 4-19 (183)
337 PRK14962 DNA polymerase III su 20.9 50 0.0011 39.0 1.5 41 256-304 12-53 (472)
338 TIGR00708 cobA cob(I)alamin ad 20.8 37 0.0008 34.9 0.4 26 287-312 5-30 (173)
339 PF00485 PRK: Phosphoribulokin 20.8 35 0.00076 34.7 0.2 15 290-304 2-16 (194)
340 PRK14970 DNA polymerase III su 20.7 57 0.0012 36.6 1.9 27 278-304 29-56 (367)
341 PRK10865 protein disaggregatio 20.5 58 0.0012 41.4 2.0 38 266-304 572-615 (857)
342 PF04548 AIG1: AIG1 family; I 20.3 39 0.00085 35.1 0.5 16 289-304 2-17 (212)
343 PF14532 Sigma54_activ_2: Sigm 20.3 45 0.00098 32.0 0.8 21 284-304 18-38 (138)
344 TIGR02902 spore_lonB ATP-depen 20.1 62 0.0013 38.7 2.1 42 255-304 62-103 (531)
No 1
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.8e-106 Score=886.48 Aligned_cols=506 Identities=47% Similarity=0.703 Sum_probs=434.9
Q ss_pred CCcccccccHHHHHHHhhcCCCCCCCCCCCCCCCchhHHHHHHHHHhCccccccccccCCCCcc--------cchhhhhc
Q 003480 1 MGGQMQQSNAAAAAAALYDHPGGSMHNNAGPTTDAGDAVMARWLQSAGLQHLASPLASNGIDHR--------LLPNLLMQ 72 (816)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 72 (816)
||++|++.++ ++...||+.+ -+..| |+.||+.|++.++.+|...+++..+.... -+|++.++
T Consensus 4 ~g~~~~i~rs-dgrih~a~v~--------~~~~d-~~~vtveW~E~~~~kgKe~~le~i~~lnp~l~~~~~~~~~~lp~~ 73 (676)
T KOG0246|consen 4 VGQHVKIKRS-DGRIHLAVVA--------EVNKD-GKCVTVEWVEKGETKGKELDLEEILLLNPELYSDLEHPIPNLPLK 73 (676)
T ss_pred ccceeEEecc-cCceeeeeEE--------EeccC-CcEEEEEhhhccccccccCCHHHHhhcChhhcccccCCCCCcccc
Confidence 6888888776 3446677663 47788 99999999999999999998888775543 35666666
Q ss_pred cccccchHHHHHHHHHHHhhccCCCC-CCCCCCCCccc-----ccccccCCCCC-CCcccCcCcc-cccccccCCccccc
Q 003480 73 GYGAQSAEEKQRLFKLMRNLNFNGES-GAEPHTPTAQT-----SGVVASDGLYS-PEFRGDFGAG-LLDLHAMDDTELLS 144 (816)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~ 144 (816)
|++++++.| +.+.+.++++...+. .+-..+|+... .-+++..+|.. |.++|.++++ ..+.|+|.+.|.+.
T Consensus 74 -~~~~~a~~~-~~~~~n~~i~~~~~~~~~rs~~~tg~~~~~~~~~~P~~~~~~~~p~~~~~~~a~~~rks~~v~e~e~l~ 151 (676)
T KOG0246|consen 74 -RPASTAINR-KGIEANRTIYESIEMIPQRSQRATGSSCKRLETALPSQRIFPPQPKSTGTAAAASARKSHAVKEVEKLQ 151 (676)
T ss_pred -ccccchhhh-hhhhhhhhcccccccchhhcccccccccccccccCCcccCCCCCCcccccchhhhhhhcccccchHHHH
Confidence 777777665 888888888844432 12212343333 12566666666 9999999998 89999999999998
Q ss_pred ccccCCCCCCCCCCCCcCCCCCcccccchhhhhh-------hccCCCCCCCCCCCccccccccCCCCCeEEEEEeCCCCc
Q 003480 145 EHMISEPFEPSPYIPSISKGFENDFNLTAGWQQK-------EQTDADASAPVPTNEKESNARENNVAKIRVVVRKRPLNK 217 (816)
Q Consensus 145 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~IrV~VRvRPl~~ 217 (816)
|..... ++++|.+++..+..-+-.+...+|... +..+. .+ .. .....+.++|+||||.||+++
T Consensus 152 e~re~~-r~~~~~~r~~r~~~~~~d~~npn~e~~~mi~~~r~~L~~---~p--ls----~~~~v~ehrI~VCVRKRPLnk 221 (676)
T KOG0246|consen 152 EQREKR-REPSPRMRSRRKSAQDVDPSNPNWEFAQMIREYREQLDS---SP--LS----MGDGVNEHRICVCVRKRPLNK 221 (676)
T ss_pred HHHHHh-hccCccccccchhhcccCCCCCchHHHHHHHHHhhhhcc---cc--cc----cCCCCccceEEEEeecCCCCc
Confidence 776654 888998887754443444444444211 11111 11 11 113456789999999999999
Q ss_pred hhhccCCCcEEEE-eCCeEEEeCCCcccccccccceeEEEeeeeeCCCCChHHHhhhhhhchHHHhhcCCcceEeeccCC
Q 003480 218 KELSRKEEDIVTV-SDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQT 296 (816)
Q Consensus 218 ~E~~~~~~~iv~v-~~~~v~v~~p~~~~~~~~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~NatIfAYGqT 296 (816)
+|....+.++|++ +++.+++|+|+.+||+++|++++.|+||++||+.++|++||+.+++|||+.+|+|..+||||||||
T Consensus 222 kE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~~IF~~G~ATCFAYGQT 301 (676)
T KOG0246|consen 222 KELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVKTIFEGGMATCFAYGQT 301 (676)
T ss_pred hhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHHHHHhCCceeeeeeccC
Confidence 9999999999999 567799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccC------------CCchhHHHHHHHHhccccccCceeEEEEEeEEeeCCeeeccccccccccccccCCCcEE
Q 003480 297 GSGKTFTMQ------------PLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGERKKLCMREDGRQQVC 364 (816)
Q Consensus 297 GSGKTyTM~------------Gl~~ra~~dLf~~l~~~~~~~~~f~V~vSf~EIYnEkV~DLL~~~~~L~ired~~~~v~ 364 (816)
||||||||. ||+..+.+|+|.++.++.|+...+.|++||||||+++|||||+++++|+++||++++|+
T Consensus 302 GSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~k~KLrvLEDg~QQVq 381 (676)
T KOG0246|consen 302 GSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLNDKKKLRVLEDGNQQVQ 381 (676)
T ss_pred CCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhccccceEEeecCCceEE
Confidence 999999993 68899999999999999999999999999999999999999999999999999999999
Q ss_pred EeccEEEEeccHHHHHHHHHHHHhccCcccCCCCCCCCCceEEEEEEEEeeeccccccccCCCCCCCCceEEEEEEEEeC
Q 003480 365 IVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNESRGKVIGKISFIDL 444 (816)
Q Consensus 365 V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~~~~~~~~~~~~~~~g~~~~~~~~skL~fVDL 444 (816)
|+||+|..|.+++|++++|+.|++.|+++.|.+|+.|||||+||+|.++... ..+++|||+||||
T Consensus 382 VVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~---------------~~k~hGKfSlIDL 446 (676)
T KOG0246|consen 382 VVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG---------------EFKLHGKFSLIDL 446 (676)
T ss_pred EeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCC---------------cceeEeEEEEEEc
Confidence 9999999999999999999999999999999999999999999999997652 1478999999999
Q ss_pred CCCCCCCCCCCCchhhhHHHHHhhHHHHHHHHHHHHHcCCCCCccCCCCccchhhhhccCC-CccEEEEEeeCCCCCCHH
Q 003480 445 AGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVG-NSKTVMISCISPNVGSCE 523 (816)
Q Consensus 445 AGSER~~~t~~~~~~~~~E~~~INkSL~ALg~vI~AL~~~~~hIPYRdSKLTrLLqDsLgG-nskT~mIa~VSPs~~~~e 523 (816)
||+||+++++..+++++.||++|||||+||++||+||.+++.|+|||.||||++|||||.| |++||||+||||...+|+
T Consensus 447 AGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~~ScE 526 (676)
T KOG0246|consen 447 AGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQVLRDSFIGENSRTCMIATISPGISSCE 526 (676)
T ss_pred cCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCcchhh
Confidence 9999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHhcccccCCC
Q 003480 524 HTLNTLRYADRVKSLSKSGN 543 (816)
Q Consensus 524 ETLsTLrfA~Rak~I~~~~~ 543 (816)
+||||||||+|+|++...+.
T Consensus 527 hTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 527 HTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred hhHHHHHHHHHHHhhcCCCC
Confidence 99999999999999976553
No 2
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.9e-78 Score=706.92 Aligned_cols=330 Identities=34% Similarity=0.544 Sum_probs=290.5
Q ss_pred ccCCCCCeEEEEEeCCCCchhhccCCCcEEEEeC-Ce-EEEeCCCcccccccccceeEEEeeeeeCCCCChHHHhhhhhh
Q 003480 199 RENNVAKIRVVVRKRPLNKKELSRKEEDIVTVSD-NA-LTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVE 276 (816)
Q Consensus 199 ~~~~~~~IrV~VRvRPl~~~E~~~~~~~iv~v~~-~~-v~v~~p~~~~~~~~~~~~~~F~FD~VFd~~asQeeVy~~~v~ 276 (816)
......+|+|+|||||++..|.......+|.+++ .+ |.|...- ..+.-.+.|+||+||+|.+.|.+||+.+|.
T Consensus 44 ~~e~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~-----~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~ 118 (1041)
T KOG0243|consen 44 HKEKEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTI-----ASKQIDKTFTFDKVFGPESQQEDLYDQAVS 118 (1041)
T ss_pred CCCCCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEeccc-----ccccccceeecceeeCcchhHHHHHHHHHH
Confidence 3455679999999999999999888888999888 33 6664431 111135789999999999999999999999
Q ss_pred chHHHhhcCCcceEeeccCCCCCCccccCC--------------CchhHHHHHHHHhccccccCceeEEEEEeEEeeCCe
Q 003480 277 PIIPTIFQRTKATCFAYGQTGSGKTFTMQP--------------LPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGK 342 (816)
Q Consensus 277 pLV~~vl~G~NatIfAYGqTGSGKTyTM~G--------------l~~ra~~dLf~~l~~~~~~~~~f~V~vSf~EIYnEk 342 (816)
|+|+.|+.|||||||||||||+||||||.| |+||++.+||..+... +..|.|.|||+|+|||.
T Consensus 119 p~i~eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~---~~EYsvKVSfLELYNEE 195 (1041)
T KOG0243|consen 119 PIIKEVLEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQ---GAEYSVKVSFLELYNEE 195 (1041)
T ss_pred HHHHHHhccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhc---CCeEEEEEEehhhhhHH
Confidence 999999999999999999999999999974 8899999999999863 46899999999999999
Q ss_pred eecccccc----ccccccc-----cCCCcEEEeccEEEEeccHHHHHHHHHHHHhccCcccCCCCCCCCCceEEEEEEEE
Q 003480 343 LFDLLGER----KKLCMRE-----DGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIK 413 (816)
Q Consensus 343 V~DLL~~~----~~L~ire-----d~~~~v~V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~ 413 (816)
|+|||++. +.+.+.. +++++|+|.||.|+.|+++.|++.+|++|.+.|++++|.||..|||||+||+|+|.
T Consensus 196 l~DLLa~~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvh 275 (1041)
T KOG0243|consen 196 LTDLLASEDTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVH 275 (1041)
T ss_pred HHHhcCCccccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEE
Confidence 99999763 2233332 56899999999999999999999999999999999999999999999999999996
Q ss_pred eeeccccccccCCCCCCCCceEEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHhhHHHHHHHHHHHHHcCCCCCccCCCC
Q 003480 414 KHIEVKESFRRNNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGS 493 (816)
Q Consensus 414 ~~~~~~~~~~~~~~g~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~ALg~vI~AL~~~~~hIPYRdS 493 (816)
...... .+..-...|||+||||||||...++++.++ +.+|+..||+||++||+||.||.++..|||||+|
T Consensus 276 ike~t~---------~geelvK~GKLNLVDLAGSENI~RSGA~~~-RArEAG~INqSLLTLGRVInALVe~s~HIPYRES 345 (1041)
T KOG0243|consen 276 IKENTP---------EGEELVKIGKLNLVDLAGSENISRSGARNG-RAREAGEINQSLLTLGRVINALVEHSGHIPYRES 345 (1041)
T ss_pred EecCCC---------cchhhHhhcccceeeccccccccccccccc-hhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHH
Confidence 543211 112245679999999999999999888777 5569999999999999999999999999999999
Q ss_pred ccchhhhhccCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhcccccCCCCCC
Q 003480 494 KLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSLSKSGNTKK 546 (816)
Q Consensus 494 KLTrLLqDsLgGnskT~mIa~VSPs~~~~eETLsTLrfA~Rak~I~~~~~~~~ 546 (816)
||||||||||||.++|+||+||||+..+.+|||+||.||.|||+|+|.|..+.
T Consensus 346 KLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQ 398 (1041)
T KOG0243|consen 346 KLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQ 398 (1041)
T ss_pred HHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccch
Confidence 99999999999999999999999999999999999999999999999997653
No 3
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.9e-79 Score=692.12 Aligned_cols=333 Identities=39% Similarity=0.558 Sum_probs=296.4
Q ss_pred CCCCeEEEEEeCCCCchhhccCCCcEEEEeCCe--EEEeCCCcccccccccceeEEEeeeeeCCCCChHHHhhhhhhchH
Q 003480 202 NVAKIRVVVRKRPLNKKELSRKEEDIVTVSDNA--LTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPII 279 (816)
Q Consensus 202 ~~~~IrV~VRvRPl~~~E~~~~~~~iv~v~~~~--v~v~~p~~~~~~~~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV 279 (816)
...+|+|+||+||++..+.......++.+.... +.++.|.....- ..+.|+||+||+++++|++||..++.|+|
T Consensus 3 ~~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~ftfD~vf~~~stQ~dvy~~~~~~lV 78 (574)
T KOG4280|consen 3 PACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEG----KPKSFTFDAVFDSDSTQDDVYQETVAPLV 78 (574)
T ss_pred cccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccC----CCCCceeeeeecCCCCHHHHHHHHhHHHH
Confidence 356899999999999999888887787777644 666666543322 24569999999999999999999999999
Q ss_pred HHhhcCCcceEeeccCCCCCCccccCC-------CchhHHHHHHHHhccccccCceeEEEEEeEEeeCCeeeccccccc-
Q 003480 280 PTIFQRTKATCFAYGQTGSGKTFTMQP-------LPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGERK- 351 (816)
Q Consensus 280 ~~vl~G~NatIfAYGqTGSGKTyTM~G-------l~~ra~~dLf~~l~~~~~~~~~f~V~vSf~EIYnEkV~DLL~~~~- 351 (816)
++|++|||+||||||||||||||||.| |+||++.+||..|..... ...|.|+|||+|||||.|+|||++..
T Consensus 79 ~svl~GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~-~~~f~vrvS~lEiYnE~i~DLL~~~~~ 157 (574)
T KOG4280|consen 79 ESVLEGYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKE-KTRFLVRVSYLEIYNESIRDLLSPVNP 157 (574)
T ss_pred HHHhcccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccc-cceEEEEeehHHHHhHHHHHHhCccCc
Confidence 999999999999999999999999974 899999999999987543 33799999999999999999999855
Q ss_pred -cccccccCCCcEEEeccEEEEeccHHHHHHHHHHHHhccCcccCCCCCCCCCceEEEEEEEEeeeccccccccCCCCCC
Q 003480 352 -KLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNE 430 (816)
Q Consensus 352 -~L~ired~~~~v~V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~~~~~~~~~~~~~~~g~~ 430 (816)
.+.++++++.||+|.||+++.|.++++++.+|..|.++|++++|.||..|||||+||+|+|+..... ...
T Consensus 158 ~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~---------~~~ 228 (574)
T KOG4280|consen 158 KGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKS---------DGG 228 (574)
T ss_pred CCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeeccc---------CCC
Confidence 8999999999999999999999999999999999999999999999999999999999999883211 112
Q ss_pred CCceEEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHhhHHHHHHHHHHHHHcCCCC-CccCCCCccchhhhhccCCCccE
Q 003480 431 SRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQI-HIPFRGSKLTEVLRDSFVGNSKT 509 (816)
Q Consensus 431 ~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~ALg~vI~AL~~~~~-hIPYRdSKLTrLLqDsLgGnskT 509 (816)
......|||+|||||||||..++++. +.+++|+.+||+||++||+||.||.+++. ||||||||||+||||||||||+|
T Consensus 229 ~~~~~~~rlnlvDLagsEr~~~tga~-G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT 307 (574)
T KOG4280|consen 229 LMSGRSSKLNLVDLAGSERQSKTGAE-GERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKT 307 (574)
T ss_pred ccccccceeeeeeccchhhhcccCcc-chhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceE
Confidence 23567899999999999998877655 46678999999999999999999998776 99999999999999999999999
Q ss_pred EEEEeeCCCCCCHHHHHHHHHHHHHhcccccCCCCCCcCC
Q 003480 510 VMISCISPNVGSCEHTLNTLRYADRVKSLSKSGNTKKDQG 549 (816)
Q Consensus 510 ~mIa~VSPs~~~~eETLsTLrfA~Rak~I~~~~~~~~~~~ 549 (816)
+||+||+|+..+++|||+|||||+|+|.|++.+.++.+..
T Consensus 308 ~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~ined~~ 347 (574)
T KOG4280|consen 308 TMIANVSPSSDNYEETLSTLRFAQRAKAIKNKPVINEDPK 347 (574)
T ss_pred EEEEecCchhhhhHHHHHHHHHHHHHHHhhccccccCCcc
Confidence 9999999999999999999999999999999988877654
No 4
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=1.9e-76 Score=648.82 Aligned_cols=323 Identities=41% Similarity=0.626 Sum_probs=291.7
Q ss_pred CeEEEEEeCCCCchhhccCCCcEEEEeCCeEEEeCCCccccc-----ccccceeEEEeeeeeCCCCChHHHhhhhhhchH
Q 003480 205 KIRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVDL-----TAYVEKHEFCFDAVLDERVTNDEVYRVTVEPII 279 (816)
Q Consensus 205 ~IrV~VRvRPl~~~E~~~~~~~iv~v~~~~v~v~~p~~~~~~-----~~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV 279 (816)
+|+|+|||||+++.|...+..+++.+.++.+++..|...... ....+.+.|.||+||+++++|++||+.++.|+|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv 80 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLV 80 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHH
Confidence 599999999999999888888999998888777777654222 234457899999999999999999999999999
Q ss_pred HHhhcCCcceEeeccCCCCCCccccCC------CchhHHHHHHHHhccccccCceeEEEEEeEEeeCCeeeccccc-ccc
Q 003480 280 PTIFQRTKATCFAYGQTGSGKTFTMQP------LPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGE-RKK 352 (816)
Q Consensus 280 ~~vl~G~NatIfAYGqTGSGKTyTM~G------l~~ra~~dLf~~l~~~~~~~~~f~V~vSf~EIYnEkV~DLL~~-~~~ 352 (816)
+.+++|+|+||||||||||||||||+| ++||++++||..+.... .+..|.|++||+|||||+|+|||++ ..+
T Consensus 81 ~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~-~~~~~~v~vS~~EIyne~v~DLL~~~~~~ 159 (338)
T cd01370 81 DGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERK-DDKEFEVSLSYLEIYNETIRDLLSPSSGP 159 (338)
T ss_pred HHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcc-cCceEEEEEEEEEEECCEEEECCCCCCCC
Confidence 999999999999999999999999975 89999999999998743 4568999999999999999999998 688
Q ss_pred ccccccCCCcEEEeccEEEEeccHHHHHHHHHHHHhccCcccCCCCCCCCCceEEEEEEEEeeeccccccccCCCCCCCC
Q 003480 353 LCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNESR 432 (816)
Q Consensus 353 L~ired~~~~v~V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~~~~~~~~~~~~~~~g~~~~ 432 (816)
+.+++|+.++++|.|++++.|.+++|++++|+.|.++|++++|.+|..|||||+||+|+|.+..... ....
T Consensus 160 l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~---------~~~~ 230 (338)
T cd01370 160 LELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTA---------SINQ 230 (338)
T ss_pred ceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCC---------CCCC
Confidence 9999999999999999999999999999999999999999999999999999999999998765321 1122
Q ss_pred ceEEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHhhHHHHHHHHHHHHHcCCC---CCccCCCCccchhhhhccCCCccE
Q 003480 433 GKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQ---IHIPFRGSKLTEVLRDSFVGNSKT 509 (816)
Q Consensus 433 ~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~ALg~vI~AL~~~~---~hIPYRdSKLTrLLqDsLgGnskT 509 (816)
....|+|+|||||||||..++.. .+.+.+|++.||+||++|++||.+|..+. .|||||+||||+||||+|||||+|
T Consensus 231 ~~~~s~l~~VDLAGsEr~~~~~~-~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t 309 (338)
T cd01370 231 QVRIGKLSLIDLAGSERASATNN-RGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKT 309 (338)
T ss_pred cEEEEEEEEEECCCCccccccCC-CCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeE
Confidence 56789999999999999777654 45566799999999999999999998876 899999999999999999999999
Q ss_pred EEEEeeCCCCCCHHHHHHHHHHHHHhccc
Q 003480 510 VMISCISPNVGSCEHTLNTLRYADRVKSL 538 (816)
Q Consensus 510 ~mIa~VSPs~~~~eETLsTLrfA~Rak~I 538 (816)
+||+||||+..+++||++||+||+|||+|
T Consensus 310 ~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 310 VMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999986
No 5
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.1e-78 Score=699.20 Aligned_cols=334 Identities=34% Similarity=0.500 Sum_probs=301.0
Q ss_pred CCCeEEEEEeCCCCchhhccCCCcEEEEeCCeEEEeCCCcccccccccceeEEEeeeeeCCC-------CChHHHhhhhh
Q 003480 203 VAKIRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDER-------VTNDEVYRVTV 275 (816)
Q Consensus 203 ~~~IrV~VRvRPl~~~E~~~~~~~iv~v~~~~v~v~~p~~~~~~~~~~~~~~F~FD~VFd~~-------asQeeVy~~~v 275 (816)
..+|+|+||||||+..|..+...++|.+.++++++..|+...+ ...|+||++|+.. ++|..||+.++
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k~------~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg 76 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSKD------APKFTFDYSYWSHDSEDPHFASQKQVYEDLG 76 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCccc------CCceecceeeecCCCCCCchhhHHHHHHHHh
Confidence 3578999999999999999999999999999988887764433 3459999999755 58999999999
Q ss_pred hchHHHhhcCCcceEeeccCCCCCCccccC--------CCchhHHHHHHHHhccccccCceeEEEEEeEEeeCCeeeccc
Q 003480 276 EPIIPTIFQRTKATCFAYGQTGSGKTFTMQ--------PLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLL 347 (816)
Q Consensus 276 ~pLV~~vl~G~NatIfAYGqTGSGKTyTM~--------Gl~~ra~~dLf~~l~~~~~~~~~f~V~vSf~EIYnEkV~DLL 347 (816)
.++++++|+|||+||||||||||||||||+ ||+||.|++||.++......+..|.|.|||+|||||+|+|||
T Consensus 77 ~~mL~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL 156 (1221)
T KOG0245|consen 77 REMLDHAFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLL 156 (1221)
T ss_pred HHHHHHHhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHh
Confidence 999999999999999999999999999996 488999999999999888788899999999999999999999
Q ss_pred c-c--cccccccccCCCcEEEeccEEEEeccHHHHHHHHHHHHhccCcccCCCCCCCCCceEEEEEEEEeeecccccccc
Q 003480 348 G-E--RKKLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRR 424 (816)
Q Consensus 348 ~-~--~~~L~ired~~~~v~V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~~~~~~~~~~~~ 424 (816)
+ + +..|++||.+.-|+||.+|+.+.|+|..|+..+|+.|++.|++++|+||..|||||+||+|.+.+..-....
T Consensus 157 ~~p~~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~--- 233 (1221)
T KOG0245|consen 157 NAPKSKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDT--- 233 (1221)
T ss_pred hCCCCCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccC---
Confidence 8 4 467999999999999999999999999999999999999999999999999999999999999886432211
Q ss_pred CCCCCCCCceEEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHhhHHHHHHHHHHHHHcCC-------CCCccCCCCccch
Q 003480 425 NNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDND-------QIHIPFRGSKLTE 497 (816)
Q Consensus 425 ~~~g~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~ALg~vI~AL~~~-------~~hIPYRdSKLTr 497 (816)
......+|||+|||||||||...++ ..+.+.+||++|||||++||+||+||++. ..+||||||.||+
T Consensus 234 -----~l~sek~SKIsLVDLAGSERasstG-a~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTW 307 (1221)
T KOG0245|consen 234 -----GLDSEKVSKISLVDLAGSERASSTG-ANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTW 307 (1221)
T ss_pred -----CCcceeeeeeeEEeccCcccccccC-CCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHH
Confidence 1235678999999999999965555 45577789999999999999999999642 3489999999999
Q ss_pred hhhhccCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhcccccCCCCCCcCCCC
Q 003480 498 VLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSLSKSGNTKKDQGQN 551 (816)
Q Consensus 498 LLqDsLgGnskT~mIa~VSPs~~~~eETLsTLrfA~Rak~I~~~~~~~~~~~~~ 551 (816)
|||++|||||||+|||++||...+|+|||+|||||+|+|+|++.+.++.++...
T Consensus 308 LLkEnLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaK 361 (1221)
T KOG0245|consen 308 LLKENLGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAK 361 (1221)
T ss_pred HHHHhcCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHH
Confidence 999999999999999999999999999999999999999999999888776553
No 6
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=7.8e-76 Score=639.95 Aligned_cols=315 Identities=67% Similarity=1.002 Sum_probs=296.9
Q ss_pred CCeEEEEEeCCCCchhhccCCCcEEEEeCC-eEEEeCCCcccccccccceeEEEeeeeeCCCCChHHHhhhhhhchHHHh
Q 003480 204 AKIRVVVRKRPLNKKELSRKEEDIVTVSDN-ALTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPTI 282 (816)
Q Consensus 204 ~~IrV~VRvRPl~~~E~~~~~~~iv~v~~~-~v~v~~p~~~~~~~~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV~~v 282 (816)
.+|+|+|||||+++.|...++.+++.+.++ .+++++|+..++.....+.+.|.||+||+++++|++||+.++.|+|+.+
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 479999999999999988888889999886 7999999888777776678899999999999999999999999999999
Q ss_pred hcCCcceEeeccCCCCCCccccC------CCchhHHHHHHHHhccccccCceeEEEEEeEEeeCCeeecccccccccccc
Q 003480 283 FQRTKATCFAYGQTGSGKTFTMQ------PLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGERKKLCMR 356 (816)
Q Consensus 283 l~G~NatIfAYGqTGSGKTyTM~------Gl~~ra~~dLf~~l~~~~~~~~~f~V~vSf~EIYnEkV~DLL~~~~~L~ir 356 (816)
++|+|+||||||||||||||||+ |++||++++||+.+.... ..|.|++||+|||+|+|+|||++.+.+.++
T Consensus 81 ~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~---~~~~v~~S~~EIy~e~v~DLL~~~~~l~i~ 157 (322)
T cd01367 81 FEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPN---DDLGVTVSFFEIYGGKLFDLLNDRKRLSVL 157 (322)
T ss_pred hCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccc---cccEEEEEEEeeecCchhhhccCccceeEE
Confidence 99999999999999999999998 799999999999988643 579999999999999999999999999999
Q ss_pred ccCCCcEEEeccEEEEeccHHHHHHHHHHHHhccCcccCCCCCCCCCceEEEEEEEEeeeccccccccCCCCCCCCceEE
Q 003480 357 EDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNESRGKVI 436 (816)
Q Consensus 357 ed~~~~v~V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~~~~~~~~~~~~~~~g~~~~~~~~ 436 (816)
+++.++++|.|++++.|.|++|++++|+.|.++|++++|.+|..|||||+||+|+|.+... ....
T Consensus 158 ~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~---------------~~~~ 222 (322)
T cd01367 158 EDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL---------------NKLL 222 (322)
T ss_pred EcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC---------------CeeE
Confidence 9999999999999999999999999999999999999999999999999999999987542 3568
Q ss_pred EEEEEEeCCCCCCCCCCCCCchhhhHHHHHhhHHHHHHHHHHHHHcCCCCCccCCCCccchhhhhccCCCccEEEEEeeC
Q 003480 437 GKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCIS 516 (816)
Q Consensus 437 skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~ALg~vI~AL~~~~~hIPYRdSKLTrLLqDsLgGnskT~mIa~VS 516 (816)
|+|+|||||||||..+.....+++.+|+..||+||++|++||.+|..++.|||||+||||+||||+|+|||+|+||+|||
T Consensus 223 s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vs 302 (322)
T cd01367 223 GKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATIS 302 (322)
T ss_pred EEEEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeC
Confidence 99999999999998887777778889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhc
Q 003480 517 PNVGSCEHTLNTLRYADRVK 536 (816)
Q Consensus 517 Ps~~~~eETLsTLrfA~Rak 536 (816)
|...+++||++||+||+|+|
T Consensus 303 p~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 303 PSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred CchhhHHHHHHHHHHHHhhC
Confidence 99999999999999999986
No 7
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=8e-75 Score=635.69 Aligned_cols=314 Identities=35% Similarity=0.485 Sum_probs=276.2
Q ss_pred CCeEEEEEeCCCCchhhccCCCcEEEEeCC-eEEEeCCCcccccccccceeEEEeeeeeCCCCChHHHhhhhhhchHHHh
Q 003480 204 AKIRVVVRKRPLNKKELSRKEEDIVTVSDN-ALTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPTI 282 (816)
Q Consensus 204 ~~IrV~VRvRPl~~~E~~~~~~~iv~v~~~-~v~v~~p~~~~~~~~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV~~v 282 (816)
.+|+|+|||||++..|...+...++.+.++ .+.++... .+.|.||+||+++++|++||+.++.|+|+.+
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~~----------~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~ 70 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSHP----------PRMFTFDHVADSNTNQEDVFQSVGKPLVEDC 70 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCCC----------CcEEeCCeEeCCCCCHHHHHHHHHHHHHHHH
Confidence 479999999999999876556566665543 34443221 3689999999999999999999999999999
Q ss_pred hcCCcceEeeccCCCCCCccccCC--------------CchhHHHHHHHHhcccc---ccCceeEEEEEeEEeeCCeeec
Q 003480 283 FQRTKATCFAYGQTGSGKTFTMQP--------------LPLRAAEDLVRLLHQPV---YRNQRFKLWLSYFEIYGGKLFD 345 (816)
Q Consensus 283 l~G~NatIfAYGqTGSGKTyTM~G--------------l~~ra~~dLf~~l~~~~---~~~~~f~V~vSf~EIYnEkV~D 345 (816)
|+|||+||||||||||||||||+| ++||++++||..+.... ..+..|.|++||+|||||+|||
T Consensus 71 ~~G~n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~D 150 (337)
T cd01373 71 LSGYNGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITD 150 (337)
T ss_pred hCCCceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeee
Confidence 999999999999999999999965 67999999999886532 2345789999999999999999
Q ss_pred ccccc-ccccccccCCCcEEEeccEEEEeccHHHHHHHHHHHHhccCcccCCCCCCCCCceEEEEEEEEeeecccccccc
Q 003480 346 LLGER-KKLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRR 424 (816)
Q Consensus 346 LL~~~-~~L~ired~~~~v~V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~~~~~~~~~~~~ 424 (816)
||++. ..+.+++++.++++|.|++++.|.|++|++++|..|.++|++++|.+|..|||||+||+|+|.+......
T Consensus 151 LL~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~---- 226 (337)
T cd01373 151 LLDPTSRNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKAS---- 226 (337)
T ss_pred CCCCCCCCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCC----
Confidence 99875 5799999999999999999999999999999999999999999999999999999999999987542211
Q ss_pred CCCCCCCCceEEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHhhHHHHHHHHHHHHHcC----CCCCccCCCCccchhhh
Q 003480 425 NNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDN----DQIHIPFRGSKLTEVLR 500 (816)
Q Consensus 425 ~~~g~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~ALg~vI~AL~~----~~~hIPYRdSKLTrLLq 500 (816)
......|+|+|||||||||..+++. .+.+.+|+..||+||++|++||.+|.+ +..|||||+||||+|||
T Consensus 227 ------~~~~~~s~l~~VDLAGSEr~~~~~~-~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~ 299 (337)
T cd01373 227 ------STNIRTSRLNLVDLAGSERQKDDGA-EGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLR 299 (337)
T ss_pred ------CCcEEEEEEEEEECCCCCcccccCC-ccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHH
Confidence 1245679999999999999877654 456678999999999999999999964 46899999999999999
Q ss_pred hccCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhccc
Q 003480 501 DSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSL 538 (816)
Q Consensus 501 DsLgGnskT~mIa~VSPs~~~~eETLsTLrfA~Rak~I 538 (816)
|+|||||+|+||+||||+..+++||++||+||+|+|.|
T Consensus 300 dsLggns~t~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 300 DSLGGNAKTTIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred HhcCCCceEEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999986
No 8
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=1.4e-74 Score=635.60 Aligned_cols=320 Identities=29% Similarity=0.522 Sum_probs=282.7
Q ss_pred CeEEEEEeCCCCchhhccCCCcEEEEeCC-eEEEeCCCccccc----ccccceeEEEeeeeeCCCCChHHHhhhhhhchH
Q 003480 205 KIRVVVRKRPLNKKELSRKEEDIVTVSDN-ALTVHEPKLKVDL----TAYVEKHEFCFDAVLDERVTNDEVYRVTVEPII 279 (816)
Q Consensus 205 ~IrV~VRvRPl~~~E~~~~~~~iv~v~~~-~v~v~~p~~~~~~----~~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV 279 (816)
+|+|+|||||+++.|...+..+++.+.++ .|.++.|...... ....+.+.|.||+||+++++|++||+.++.|+|
T Consensus 2 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~v 81 (345)
T cd01368 2 PVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPLV 81 (345)
T ss_pred CEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHHH
Confidence 79999999999999987777777776654 5888888654322 223457899999999999999999999999999
Q ss_pred HHhhcCCcceEeeccCCCCCCccccCC------CchhHHHHHHHHhccccccCceeEEEEEeEEeeCCeeecccccc---
Q 003480 280 PTIFQRTKATCFAYGQTGSGKTFTMQP------LPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGER--- 350 (816)
Q Consensus 280 ~~vl~G~NatIfAYGqTGSGKTyTM~G------l~~ra~~dLf~~l~~~~~~~~~f~V~vSf~EIYnEkV~DLL~~~--- 350 (816)
+.+++|+|+||||||||||||||||+| |++|++++||+.+.. |.|+|||+|||||+|+|||++.
T Consensus 82 ~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~-------~~v~~S~~EIyne~v~DLL~~~~~~ 154 (345)
T cd01368 82 QDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG-------YSVFVSYVEIYNNYIYDLLEDSPSS 154 (345)
T ss_pred HHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh-------eeEEEEEEEEeCCEeEeCCCCcccc
Confidence 999999999999999999999999975 899999999999865 8999999999999999999864
Q ss_pred ----ccccccccCCCcEEEeccEEEEeccHHHHHHHHHHHHhccCcccCCCCCCCCCceEEEEEEEEeeeccccccccCC
Q 003480 351 ----KKLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNN 426 (816)
Q Consensus 351 ----~~L~ired~~~~v~V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~~~~~~~~~~~~~~ 426 (816)
.++.+++|.+++++|.|++++.|.|++|++++|..|.++|.+++|.+|..|||||+||+|+|.+........
T Consensus 155 ~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~---- 230 (345)
T cd01368 155 TKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGD---- 230 (345)
T ss_pred ccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccc----
Confidence 368999999999999999999999999999999999999999999999999999999999998764321110
Q ss_pred CCCCCCceEEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHhhHHHHHHHHHHHHHcC------CCCCccCCCCccchhhh
Q 003480 427 DGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDN------DQIHIPFRGSKLTEVLR 500 (816)
Q Consensus 427 ~g~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~ALg~vI~AL~~------~~~hIPYRdSKLTrLLq 500 (816)
..........|+|+|||||||||..++.. .+.+++|+..||+||++|++||.+|.+ +..|||||+||||+|||
T Consensus 231 ~~~~~~~~~~s~l~~VDLAGsEr~~~~~~-~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~ 309 (345)
T cd01368 231 VDQDKDQITVSQLSLVDLAGSERTSRTQN-TGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQ 309 (345)
T ss_pred cccCCCceEEEEEEEEecccccccccccc-cchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHH
Confidence 01112356789999999999999887744 456677999999999999999999976 56899999999999999
Q ss_pred hccCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhc
Q 003480 501 DSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVK 536 (816)
Q Consensus 501 DsLgGnskT~mIa~VSPs~~~~eETLsTLrfA~Rak 536 (816)
|+|+|||+|+||+||||+..+++||++||+||.+++
T Consensus 310 ~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 310 NYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred HhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999985
No 9
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=1.7e-74 Score=684.01 Aligned_cols=321 Identities=33% Similarity=0.513 Sum_probs=280.8
Q ss_pred CCCCeEEEEEeCCCCchhhccCCCcEEEEeCCeEEEeCCCcccccccccceeEEEeeeeeCCCCChHHHhhhhhhchHHH
Q 003480 202 NVAKIRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPT 281 (816)
Q Consensus 202 ~~~~IrV~VRvRPl~~~E~~~~~~~iv~v~~~~v~v~~p~~~~~~~~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV~~ 281 (816)
...+|+|||||||++..|. +...++.+.++.+.+. .+.|.||+||+++++|++||+.++.|+|+.
T Consensus 96 ~ds~VkV~VRVRPl~~~E~--g~~iV~~~s~dsl~I~-------------~qtFtFD~VFdp~aTQedVFe~vv~PLV~s 160 (1320)
T PLN03188 96 SDSGVKVIVRMKPLNKGEE--GEMIVQKMSNDSLTIN-------------GQTFTFDSIADPESTQEDIFQLVGAPLVEN 160 (1320)
T ss_pred CCCCeEEEEEcCCCCCccC--CCeeEEEcCCCeEEEe-------------CcEEeCCeeeCCCCCHHHHHHHHHHHHHHH
Confidence 3579999999999998863 3334555555555553 358999999999999999999999999999
Q ss_pred hhcCCcceEeeccCCCCCCccccCC----------------CchhHHHHHHHHhccc----cccCceeEEEEEeEEeeCC
Q 003480 282 IFQRTKATCFAYGQTGSGKTFTMQP----------------LPLRAAEDLVRLLHQP----VYRNQRFKLWLSYFEIYGG 341 (816)
Q Consensus 282 vl~G~NatIfAYGqTGSGKTyTM~G----------------l~~ra~~dLf~~l~~~----~~~~~~f~V~vSf~EIYnE 341 (816)
+|+|||+||||||||||||||||+| |+||++.+||..+... ......|.|+|||+|||||
T Consensus 161 vLdGyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNE 240 (1320)
T PLN03188 161 CLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNE 240 (1320)
T ss_pred HhcCCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecC
Confidence 9999999999999999999999964 7899999999998642 1234579999999999999
Q ss_pred eeecccccc-ccccccccCCCcEEEeccEEEEeccHHHHHHHHHHHHhccCcccCCCCCCCCCceEEEEEEEEeeecccc
Q 003480 342 KLFDLLGER-KKLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKE 420 (816)
Q Consensus 342 kV~DLL~~~-~~L~ired~~~~v~V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~~~~~~~~ 420 (816)
+|||||++. +.+.|++|.+++++|.||+++.|.+++|++++|..|..+|++++|.+|..|||||+||+|+|.+.....
T Consensus 241 kI~DLLsp~~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~- 319 (1320)
T PLN03188 241 QITDLLDPSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSV- 319 (1320)
T ss_pred cceeccccccCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeeccc-
Confidence 999999875 578999999999999999999999999999999999999999999999999999999999998653211
Q ss_pred ccccCCCCCCCCceEEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHhhHHHHHHHHHHHHHcC-----CCCCccCCCCcc
Q 003480 421 SFRRNNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDN-----DQIHIPFRGSKL 495 (816)
Q Consensus 421 ~~~~~~~g~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~ALg~vI~AL~~-----~~~hIPYRdSKL 495 (816)
.........|+|+|||||||||...++. .+.+++|+++||+||++|++||.+|.. +..|||||+|||
T Consensus 320 -------~dg~ss~r~SkLnLVDLAGSER~kkTga-~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKL 391 (1320)
T PLN03188 320 -------ADGLSSFKTSRINLVDLAGSERQKLTGA-AGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRL 391 (1320)
T ss_pred -------CCCCcceEEEEEEEEECCCchhccccCc-ccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchH
Confidence 1111235689999999999999877654 455667999999999999999999964 457999999999
Q ss_pred chhhhhccCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhcccccCCCCCC
Q 003480 496 TEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSLSKSGNTKK 546 (816)
Q Consensus 496 TrLLqDsLgGnskT~mIa~VSPs~~~~eETLsTLrfA~Rak~I~~~~~~~~ 546 (816)
|+||||+|||||+|+||+||||+..+++||++||+||+|+|+|++.+..+.
T Consensus 392 TrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe 442 (1320)
T PLN03188 392 TFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNE 442 (1320)
T ss_pred HHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceecc
Confidence 999999999999999999999999999999999999999999999886654
No 10
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=1.6e-73 Score=629.65 Aligned_cols=330 Identities=35% Similarity=0.514 Sum_probs=296.8
Q ss_pred CCeEEEEEeCCCCchhhccCCCcEEEEeCCeEEEeCCCcccccccccceeEEEeeeeeCCC-------CChHHHhhhhhh
Q 003480 204 AKIRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDER-------VTNDEVYRVTVE 276 (816)
Q Consensus 204 ~~IrV~VRvRPl~~~E~~~~~~~iv~v~~~~v~v~~p~~~~~~~~~~~~~~F~FD~VFd~~-------asQeeVy~~~v~ 276 (816)
++|+|+||+||++..|...++..++.+.++.+++..|.... ......+.|.||+||+++ ++|++||+.++.
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~v~v~~~~~~~--~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~ 78 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAAD--ATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGR 78 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCCEEEEEcCCccc--ccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHH
Confidence 47999999999999999889999999999899999886421 223356889999999999 999999999999
Q ss_pred chHHHhhcCCcceEeeccCCCCCCccccC------CCchhHHHHHHHHhccccccCceeEEEEEeEEeeCCeeecccccc
Q 003480 277 PIIPTIFQRTKATCFAYGQTGSGKTFTMQ------PLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGER 350 (816)
Q Consensus 277 pLV~~vl~G~NatIfAYGqTGSGKTyTM~------Gl~~ra~~dLf~~l~~~~~~~~~f~V~vSf~EIYnEkV~DLL~~~ 350 (816)
|+|+.+++|+|+||||||||||||||||+ ||++|++++||+.+.........|.|+|||+|||||+|+|||++.
T Consensus 79 p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~ 158 (356)
T cd01365 79 ELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPK 158 (356)
T ss_pred HHHHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCC
Confidence 99999999999999999999999999997 578999999999998765556789999999999999999999877
Q ss_pred ----ccccccccCCCcEEEeccEEEEeccHHHHHHHHHHHHhccCcccCCCCCCCCCceEEEEEEEEeeeccccccccCC
Q 003480 351 ----KKLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNN 426 (816)
Q Consensus 351 ----~~L~ired~~~~v~V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~~~~~~~~~~~~~~ 426 (816)
..+.++++..++++|.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+......
T Consensus 159 ~~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~------ 232 (356)
T cd01365 159 KKNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKE------ 232 (356)
T ss_pred ccCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccC------
Confidence 4789999999999999999999999999999999999999999999999999999999999987643211
Q ss_pred CCCCCCceEEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHhhHHHHHHHHHHHHHcCC--------CCCccCCCCccchh
Q 003480 427 DGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDND--------QIHIPFRGSKLTEV 498 (816)
Q Consensus 427 ~g~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~ALg~vI~AL~~~--------~~hIPYRdSKLTrL 498 (816)
........|+|+|||||||||..+++.. +.+++|+..||+||++|++||.+|... ..|||||+||||+|
T Consensus 233 --~~~~~~~~s~l~~VDLAGsEr~~~~~~~-~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~l 309 (356)
T cd01365 233 --TDLTTEKVSKISLVDLAGSERASSTGAE-GDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWL 309 (356)
T ss_pred --CCCCceEEEEEEeeeccccccccccccc-chhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHH
Confidence 1123567899999999999998776544 566679999999999999999999653 58999999999999
Q ss_pred hhhccCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhcccccCCCC
Q 003480 499 LRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSLSKSGNT 544 (816)
Q Consensus 499 LqDsLgGnskT~mIa~VSPs~~~~eETLsTLrfA~Rak~I~~~~~~ 544 (816)
|||+|||||+|+||+||||...+++||++||+||+|+++|++.|..
T Consensus 310 L~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~ 355 (356)
T cd01365 310 LKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVV 355 (356)
T ss_pred HHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCcccc
Confidence 9999999999999999999999999999999999999999988743
No 11
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=2.2e-74 Score=639.43 Aligned_cols=322 Identities=36% Similarity=0.525 Sum_probs=289.9
Q ss_pred CCCCeEEEEEeCCCCchhhccCCCcEEEEeC--CeEEEeCCCcccccccccceeEEEeeeeeCCCCChHHHhhhhhhchH
Q 003480 202 NVAKIRVVVRKRPLNKKELSRKEEDIVTVSD--NALTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPII 279 (816)
Q Consensus 202 ~~~~IrV~VRvRPl~~~E~~~~~~~iv~v~~--~~v~v~~p~~~~~~~~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV 279 (816)
..++|+|+||+||++..|...+...+....+ ++|.+...+ +...|.||+||.|+++|++||+.++.|+|
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~---------~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv 75 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTK---------ETKTYVFDRVFSPNATQEDVYEFAAKPIV 75 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEeccc---------ccccceeeeecCCCccHHHHHHHHHHHHH
Confidence 5689999999999999998777776665554 234443221 23789999999999999999999999999
Q ss_pred HHhhcCCcceEeeccCCCCCCccccC---------CCchhHHHHHHHHhccccccCceeEEEEEeEEeeCCeeecccccc
Q 003480 280 PTIFQRTKATCFAYGQTGSGKTFTMQ---------PLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGER 350 (816)
Q Consensus 280 ~~vl~G~NatIfAYGqTGSGKTyTM~---------Gl~~ra~~dLf~~l~~~~~~~~~f~V~vSf~EIYnEkV~DLL~~~ 350 (816)
+.||.|||+||||||||||||||||. |++||++++||..|.. ...+..|.|.|||||||+|+++|||++.
T Consensus 76 ~dVL~GYNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys-~~~n~efhVkVsy~EIYmEKi~DLL~~~ 154 (607)
T KOG0240|consen 76 DDVLLGYNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYS-MEENLEFHVKVSYFEIYMEKIRDLLDPE 154 (607)
T ss_pred HHHhcccceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhc-CcccceEEEEEEeehhhhhHHHHHhCcc
Confidence 99999999999999999999999995 5889999999999987 4456789999999999999999999975
Q ss_pred -ccccccccCCCcEEEeccEEEEeccHHHHHHHHHHHHhccCcccCCCCCCCCCceEEEEEEEEeeeccccccccCCCCC
Q 003480 351 -KKLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGN 429 (816)
Q Consensus 351 -~~L~ired~~~~v~V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~~~~~~~~~~~~~~~g~ 429 (816)
..+.+++|.+..++|.|+++..|.++++++++|+.|..+|.++.|+||.+|||||+||+|+|++.+...
T Consensus 155 k~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~---------- 224 (607)
T KOG0240|consen 155 KTNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVED---------- 224 (607)
T ss_pred cCCceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccc----------
Confidence 579999999999999999999999999999999999999999999999999999999999999875322
Q ss_pred CCCceEEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHhhHHHHHHHHHHHHHcCC-CCCccCCCCccchhhhhccCCCcc
Q 003480 430 ESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDND-QIHIPFRGSKLTEVLRDSFVGNSK 508 (816)
Q Consensus 430 ~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~ALg~vI~AL~~~-~~hIPYRdSKLTrLLqDsLgGnsk 508 (816)
.....|||.||||||||+..++++. +....|+++||+||.|||+||+||+++ ..|||||||||||+|||+||||||
T Consensus 225 --~~~~~gkLyLVDLaGSEkvsKtga~-g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsR 301 (607)
T KOG0240|consen 225 --KRKLSGKLYLVDLAGSEKVSKTGAE-GAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSR 301 (607)
T ss_pred --hhhccccEEEEEcccccccCCCCcc-chhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcc
Confidence 2567899999999999998777654 466679999999999999999999998 899999999999999999999999
Q ss_pred EEEEEeeCCCCCCHHHHHHHHHHHHHhcccccCCCCCC
Q 003480 509 TVMISCISPNVGSCEHTLNTLRYADRVKSLSKSGNTKK 546 (816)
Q Consensus 509 T~mIa~VSPs~~~~eETLsTLrfA~Rak~I~~~~~~~~ 546 (816)
|.+|+|++|+..+..||.+||+|+.|+|.|++....+.
T Consensus 302 TtlIi~csPss~n~~ET~STl~fg~rak~ikN~v~~n~ 339 (607)
T KOG0240|consen 302 TTLIICCSPSSLNEAETKSTLRFGNRAKTIKNTVWVNL 339 (607)
T ss_pred eEEEEecCCccccccccccchhhccccccccchhhhhh
Confidence 99999999999999999999999999999998876543
No 12
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-73 Score=669.14 Aligned_cols=329 Identities=37% Similarity=0.556 Sum_probs=286.8
Q ss_pred CCCeEEEEEeCCCCchhhccCCCcEEEEeCCeEEE-eCCCcccccccccceeEEEeeeeeCCCCChHHHhhhhhhchHHH
Q 003480 203 VAKIRVVVRKRPLNKKELSRKEEDIVTVSDNALTV-HEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPT 281 (816)
Q Consensus 203 ~~~IrV~VRvRPl~~~E~~~~~~~iv~v~~~~v~v-~~p~~~~~~~~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV~~ 281 (816)
..+|.|+|||||++++|..++..+.+.+.++...+ .......+.. ....|.||+||+++++|++||+.+++|+|.+
T Consensus 5 ~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~ 81 (675)
T KOG0242|consen 5 EEKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKS---KPEKYEFDRVFGEESTQEDVYERTTKPLLLS 81 (675)
T ss_pred cceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccc---cccceeeeeecCCCCCHHHHHHhccHHHHHH
Confidence 35899999999999987666666666666555333 2222111111 1478999999999999999999999999999
Q ss_pred hhcCCcceEeeccCCCCCCccccCC------CchhHHHHHHHHhccccccCceeEEEEEeEEeeCCeeecccccccc-cc
Q 003480 282 IFQRTKATCFAYGQTGSGKTFTMQP------LPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGERKK-LC 354 (816)
Q Consensus 282 vl~G~NatIfAYGqTGSGKTyTM~G------l~~ra~~dLf~~l~~~~~~~~~f~V~vSf~EIYnEkV~DLL~~~~~-L~ 354 (816)
++.|+|+||||||||||||||||.| +++.++.+||..|.... ...|.|.|||+|||||.|+|||++... +.
T Consensus 82 ~l~G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~--~r~f~v~vSYlEIYNE~I~DLL~~~~~~L~ 159 (675)
T KOG0242|consen 82 VLEGFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSG--EREFSVRVSYLEIYNERIRDLLNPDGGDLR 159 (675)
T ss_pred HhcCcccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcC--CceeEEEEEEEEEeccccccccCCCCCCce
Confidence 9999999999999999999999975 67899999999998755 678999999999999999999998755 99
Q ss_pred ccccCCCcEEEeccEEEEeccHHHHHHHHHHHHhccCcccCCCCCCCCCceEEEEEEEEeeeccccccccCCCCCCCCce
Q 003480 355 MREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNESRGK 434 (816)
Q Consensus 355 ired~~~~v~V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~~~~~~~~~~~~~~~g~~~~~~ 434 (816)
+++|+.++++|.||++..|.|+++++.+|..|.++|+++.|.+|..|||||+||+|.|.+...... .
T Consensus 160 irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~------------~- 226 (675)
T KOG0242|consen 160 LREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS------------S- 226 (675)
T ss_pred EeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc------------c-
Confidence 999999999999999999999999999999999999999999999999999999999987642110 1
Q ss_pred EEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHhhHHHHHHHHHHHHHcCC--CCCccCCCCccchhhhhccCCCccEEEE
Q 003480 435 VIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDND--QIHIPFRGSKLTEVLRDSFVGNSKTVMI 512 (816)
Q Consensus 435 ~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~ALg~vI~AL~~~--~~hIPYRdSKLTrLLqDsLgGnskT~mI 512 (816)
..++|+|||||||||...++. .+.+++||++||+||++||+||++|.++ ..||||||||||||||++|||||+|+||
T Consensus 227 ~~s~L~lIDLAGSERas~T~~-~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I 305 (675)
T KOG0242|consen 227 RVSKLNLIDLAGSERASRTGN-EGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAII 305 (675)
T ss_pred hhheehhhhhhhhhhhhhhhc-cceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEE
Confidence 678999999999999766654 4566689999999999999999999876 5689999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHHHHHHhcccccCCCCCCcCCC
Q 003480 513 SCISPNVGSCEHTLNTLRYADRVKSLSKSGNTKKDQGQ 550 (816)
Q Consensus 513 a~VSPs~~~~eETLsTLrfA~Rak~I~~~~~~~~~~~~ 550 (816)
|||+|+..+++||++||+||+|+|+|++....+.....
T Consensus 306 ~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~ 343 (675)
T KOG0242|consen 306 ATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSD 343 (675)
T ss_pred EEeCchhhHHHHHHHHHHHHHHhhhcccccccceecch
Confidence 99999999999999999999999999988766544433
No 13
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=1.7e-71 Score=608.38 Aligned_cols=319 Identities=40% Similarity=0.599 Sum_probs=285.8
Q ss_pred CCeEEEEEeCCCCchhhccCCCcEEEEeC--CeEEEeCCCcccccccccceeEEEeeeeeCCCCChHHHhhhhhhchHHH
Q 003480 204 AKIRVVVRKRPLNKKELSRKEEDIVTVSD--NALTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPT 281 (816)
Q Consensus 204 ~~IrV~VRvRPl~~~E~~~~~~~iv~v~~--~~v~v~~p~~~~~~~~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV~~ 281 (816)
.+|+|+|||||+++.|...+...++.+++ ..|.++.|... .....+.|.||+||+++++|++||+.++.|+|+.
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~ 76 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKAD----AKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDS 76 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCccc----ccCCCceeeeccccCCCccHHHHHHHHHHHHHHH
Confidence 37999999999999998888888888764 34888877643 1234678999999999999999999999999999
Q ss_pred hhcCCcceEeeccCCCCCCccccCC---------CchhHHHHHHHHhccccccCceeEEEEEeEEeeCCeeeccccccc-
Q 003480 282 IFQRTKATCFAYGQTGSGKTFTMQP---------LPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGERK- 351 (816)
Q Consensus 282 vl~G~NatIfAYGqTGSGKTyTM~G---------l~~ra~~dLf~~l~~~~~~~~~f~V~vSf~EIYnEkV~DLL~~~~- 351 (816)
+++|+|+||||||||||||||||+| ++||++++||..+.... ...|.|+|||+|||+|+|+|||++..
T Consensus 77 ~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~--~~~~~v~~S~~Eiy~e~v~DLL~~~~~ 154 (333)
T cd01371 77 VLEGYNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAE--NVQFLVRVSYLEIYNEEVRDLLGKDQK 154 (333)
T ss_pred HhCCCceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhcc--CccEEEEEEEEEeeCCeeeeCCCCCCC
Confidence 9999999999999999999999975 78999999999987643 36799999999999999999998764
Q ss_pred -cccccccCCCcEEEeccEEEEeccHHHHHHHHHHHHhccCcccCCCCCCCCCceEEEEEEEEeeeccccccccCCCCCC
Q 003480 352 -KLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNE 430 (816)
Q Consensus 352 -~L~ired~~~~v~V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~~~~~~~~~~~~~~~g~~ 430 (816)
.+.+++++.++++|.|++++.|.+++|+..+|..|.++|.+++|.+|..|||||+||+|+|.+..... +.
T Consensus 155 ~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~---------~~ 225 (333)
T cd01371 155 KKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGE---------DG 225 (333)
T ss_pred CceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccC---------CC
Confidence 78999999999999999999999999999999999999999999999999999999999998765321 11
Q ss_pred CCceEEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHhhHHHHHHHHHHHHHcCCCC-CccCCCCccchhhhhccCCCccE
Q 003480 431 SRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQI-HIPFRGSKLTEVLRDSFVGNSKT 509 (816)
Q Consensus 431 ~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~ALg~vI~AL~~~~~-hIPYRdSKLTrLLqDsLgGnskT 509 (816)
......|+|+|||||||||..+++. .+.+.+|+..||+||.+|++||.+|.+++. |||||+||||+||+|+|+|||+|
T Consensus 226 ~~~~~~s~L~~VDLAGsEr~~~~~~-~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t 304 (333)
T cd01371 226 ENHIRVGKLNLVDLAGSERQSKTGA-TGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKT 304 (333)
T ss_pred CCcEEEEEEEEEECCCCCcccccCC-chhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceE
Confidence 1245689999999999999776654 455667999999999999999999998775 99999999999999999999999
Q ss_pred EEEEeeCCCCCCHHHHHHHHHHHHHhccc
Q 003480 510 VMISCISPNVGSCEHTLNTLRYADRVKSL 538 (816)
Q Consensus 510 ~mIa~VSPs~~~~eETLsTLrfA~Rak~I 538 (816)
+||+||+|...+++||++||+||+|+|+|
T Consensus 305 ~~I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 305 VMCANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred EEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999986
No 14
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=2.1e-71 Score=604.65 Aligned_cols=311 Identities=40% Similarity=0.599 Sum_probs=282.9
Q ss_pred CeEEEEEeCCCCchhhccCCCcEEEEeCC-eEEEeCCCcccccccccceeEEEeeeeeCCCCChHHHhhhhhhchHHHhh
Q 003480 205 KIRVVVRKRPLNKKELSRKEEDIVTVSDN-ALTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPTIF 283 (816)
Q Consensus 205 ~IrV~VRvRPl~~~E~~~~~~~iv~v~~~-~v~v~~p~~~~~~~~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl 283 (816)
+|+|+||+||++..|. .++.+++.+.++ .|.+.++ ...+.|.||+||+++++|++||+.++.|+|+.++
T Consensus 1 ~V~V~vRvRP~~~~e~-~~~~~~~~~~~~~~v~~~~~---------~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l 70 (321)
T cd01374 1 KIKVSVRVRPLNPRES-DNEQVAWSIDNDNTISLEES---------TPGQSFTFDRVFGGESTNREVYERIAKPVVRSAL 70 (321)
T ss_pred CeEEEEEcCcCCcccc-cCCcceEEECCCCEEEEcCC---------CCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHH
Confidence 6999999999999987 356678888877 5666554 2357999999999999999999999999999999
Q ss_pred cCCcceEeeccCCCCCCccccC------CCchhHHHHHHHHhccccccCceeEEEEEeEEeeCCeeecccccc-cccccc
Q 003480 284 QRTKATCFAYGQTGSGKTFTMQ------PLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGER-KKLCMR 356 (816)
Q Consensus 284 ~G~NatIfAYGqTGSGKTyTM~------Gl~~ra~~dLf~~l~~~~~~~~~f~V~vSf~EIYnEkV~DLL~~~-~~L~ir 356 (816)
+|+|+||||||||||||||||+ |+++|++++||..+.... +..|.|++||+|||||+|+|||++. ..+.++
T Consensus 71 ~G~n~~i~ayG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~--~~~~~v~~S~~Eiy~e~v~DLL~~~~~~l~i~ 148 (321)
T cd01374 71 EGYNGTIFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTP--DREFLLRVSYLEIYNEKIKDLLSPSPQELRIR 148 (321)
T ss_pred CCCceeEEeecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhccc--CceEEEEEEEEEEEcCEeEEccCCCCCCceEE
Confidence 9999999999999999999998 689999999999987643 5689999999999999999999987 789999
Q ss_pred ccCCCcEEEeccEEEEeccHHHHHHHHHHHHhccCcccCCCCCCCCCceEEEEEEEEeeeccccccccCCCCCCCCceEE
Q 003480 357 EDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNESRGKVI 436 (816)
Q Consensus 357 ed~~~~v~V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~~~~~~~~~~~~~~~g~~~~~~~~ 436 (816)
+++.++++|.|++++.|.|++|+..+|..|.++|++++|.+|..|||||+||+|+|.+...... .......
T Consensus 149 ~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~---------~~~~~~~ 219 (321)
T cd01374 149 EDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDS---------ESGTVRV 219 (321)
T ss_pred ECCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCC---------CCCcEEE
Confidence 9999999999999999999999999999999999999999999999999999999988653211 1225678
Q ss_pred EEEEEEeCCCCCCCCCCCCCchhhhHHHHHhhHHHHHHHHHHHHHcCCC--CCccCCCCccchhhhhccCCCccEEEEEe
Q 003480 437 GKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQ--IHIPFRGSKLTEVLRDSFVGNSKTVMISC 514 (816)
Q Consensus 437 skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~ALg~vI~AL~~~~--~hIPYRdSKLTrLLqDsLgGnskT~mIa~ 514 (816)
|+|+|||||||||..+.+ .+.+++|+..||+||++|++||.+|.+++ .|||||+||||+||+|+|+|||+|+||+|
T Consensus 220 s~l~~vDLAGsE~~~~~~--~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~ 297 (321)
T cd01374 220 STLNLIDLAGSERASQTG--AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICT 297 (321)
T ss_pred EEEEEEECCCCCccccCC--CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEE
Confidence 999999999999987776 55667799999999999999999999885 99999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHHhccc
Q 003480 515 ISPNVGSCEHTLNTLRYADRVKSL 538 (816)
Q Consensus 515 VSPs~~~~eETLsTLrfA~Rak~I 538 (816)
|||...+++||++||+||+|+|+|
T Consensus 298 vsp~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 298 ISPASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred eCCccccHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999986
No 15
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=3.3e-71 Score=610.13 Aligned_cols=325 Identities=37% Similarity=0.536 Sum_probs=288.3
Q ss_pred CCeEEEEEeCCCCchhhccCCCcEEEEeCC--eEEEeCCCcccccccccceeEEEeeeeeCCCCChHHHhhhhhhchHHH
Q 003480 204 AKIRVVVRKRPLNKKELSRKEEDIVTVSDN--ALTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPT 281 (816)
Q Consensus 204 ~~IrV~VRvRPl~~~E~~~~~~~iv~v~~~--~v~v~~p~~~~~~~~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV~~ 281 (816)
.+|+|+||+||+...|...+...++.+.+. .|.+..+.. .....+.|.||+||+++++|++||+.++.|+|+.
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~-----~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~ 76 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGA-----DKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDE 76 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCc-----ccccceeEeccccCCCCCCHHHHHHHHHHHHHHH
Confidence 589999999999999987778888888764 355544321 1224578999999999999999999999999999
Q ss_pred hhcCCcceEeeccCCCCCCccccC-----------------CCchhHHHHHHHHhccccccCceeEEEEEeEEeeCCeee
Q 003480 282 IFQRTKATCFAYGQTGSGKTFTMQ-----------------PLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLF 344 (816)
Q Consensus 282 vl~G~NatIfAYGqTGSGKTyTM~-----------------Gl~~ra~~dLf~~l~~~~~~~~~f~V~vSf~EIYnEkV~ 344 (816)
+++|+|+||||||||||||||||+ |++||++.+||..+... +..|.|++||+|||+|+|+
T Consensus 77 ~~~G~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~---~~~~~v~~S~~EIy~e~v~ 153 (352)
T cd01364 77 VLMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ---NTEYSVKVSYLELYNEELF 153 (352)
T ss_pred HhCCCeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc---cceeEEEEEEEEeeCCeee
Confidence 999999999999999999999995 46799999999998764 5679999999999999999
Q ss_pred cccccc----cccccccc--CCCcEEEeccEEEEeccHHHHHHHHHHHHhccCcccCCCCCCCCCceEEEEEEEEeeecc
Q 003480 345 DLLGER----KKLCMRED--GRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEV 418 (816)
Q Consensus 345 DLL~~~----~~L~ired--~~~~v~V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~~~~~~ 418 (816)
|||++. +++.++++ ..++++|.|++++.|.+++|++++|+.|.++|++++|.+|..|||||+||+|+|.+....
T Consensus 154 DLL~~~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~ 233 (352)
T cd01364 154 DLLSSESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETT 233 (352)
T ss_pred eCCCCccccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccC
Confidence 999874 57889999 689999999999999999999999999999999999999999999999999999875421
Q ss_pred ccccccCCCCCCCCceEEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHhhHHHHHHHHHHHHHcCCCCCccCCCCccchh
Q 003480 419 KESFRRNNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEV 498 (816)
Q Consensus 419 ~~~~~~~~~g~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~ALg~vI~AL~~~~~hIPYRdSKLTrL 498 (816)
. ........|+|+|||||||||..+.+.. +.+..|+..||+||++|++||.+|..+..|||||+||||+|
T Consensus 234 ~---------~~~~~~~~s~l~~VDLAGsE~~~~~~~~-~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~l 303 (352)
T cd01364 234 I---------SGEELVKIGKLNLVDLAGSENIGRSGAE-NKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRL 303 (352)
T ss_pred C---------CCCccEEEEEEEEEECCCccccccccCc-chhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHHH
Confidence 1 1112346799999999999997766554 45667999999999999999999999999999999999999
Q ss_pred hhhccCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhcccccCCCCCC
Q 003480 499 LRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSLSKSGNTKK 546 (816)
Q Consensus 499 LqDsLgGnskT~mIa~VSPs~~~~eETLsTLrfA~Rak~I~~~~~~~~ 546 (816)
|+|+|||||+|+||+||||...+++||++||+||+|+++|++.|.++.
T Consensus 304 L~~~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 304 LQDSLGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred HHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 999999999999999999999999999999999999999999987653
No 16
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=5.1e-71 Score=602.35 Aligned_cols=312 Identities=40% Similarity=0.583 Sum_probs=283.6
Q ss_pred CCeEEEEEeCCCCchhhccCCCcEEEEeCC-eEEEeCCCcccccccccceeEEEeeeeeCCCCChHHHhhhhhhchHHHh
Q 003480 204 AKIRVVVRKRPLNKKELSRKEEDIVTVSDN-ALTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPTI 282 (816)
Q Consensus 204 ~~IrV~VRvRPl~~~E~~~~~~~iv~v~~~-~v~v~~p~~~~~~~~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV~~v 282 (816)
.+|+|+|||||+++.|...+...++.+.++ .|++..+. +.+.|.||+||+++++|++||+.++.|+|+.+
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~~---------~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~ 72 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGSD---------DGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDV 72 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCCCEEEecCCC---------CceEEEcCeEECCCCCHHHHHHHHHHHHHHHH
Confidence 589999999999999977788888888876 47776652 35789999999999999999999999999999
Q ss_pred hcCCcceEeeccCCCCCCccccC---------CCchhHHHHHHHHhccccccCceeEEEEEeEEeeCCeeecccccc-cc
Q 003480 283 FQRTKATCFAYGQTGSGKTFTMQ---------PLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGER-KK 352 (816)
Q Consensus 283 l~G~NatIfAYGqTGSGKTyTM~---------Gl~~ra~~dLf~~l~~~~~~~~~f~V~vSf~EIYnEkV~DLL~~~-~~ 352 (816)
++|+|+||||||||||||||||+ |++||++++||..+... ..+..|.|++||+|||+|+++|||++. ..
T Consensus 73 ~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~-~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~ 151 (325)
T cd01369 73 LNGYNGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSM-DENLEFHVKVSYLEIYMEKIRDLLDVSKDN 151 (325)
T ss_pred HcCccceEEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhc-cCCceEEEEEEEEEEECCChhhcccCccCC
Confidence 99999999999999999999995 47899999999998764 345679999999999999999999874 57
Q ss_pred ccccccCCCcEEEeccEEEEeccHHHHHHHHHHHHhccCcccCCCCCCCCCceEEEEEEEEeeeccccccccCCCCCCCC
Q 003480 353 LCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNESR 432 (816)
Q Consensus 353 L~ired~~~~v~V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~~~~~~~~~~~~~~~g~~~~ 432 (816)
+.++++..++++|.|++++.|.|++|++.+|..|.++|++++|.+|..|||||+||+|+|.+..... .
T Consensus 152 l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~------------~ 219 (325)
T cd01369 152 LQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVET------------G 219 (325)
T ss_pred ceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCC------------C
Confidence 8999999999999999999999999999999999999999999999999999999999998764221 1
Q ss_pred ceEEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHhhHHHHHHHHHHHHHcCCC-CCccCCCCccchhhhhccCCCccEEE
Q 003480 433 GKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQ-IHIPFRGSKLTEVLRDSFVGNSKTVM 511 (816)
Q Consensus 433 ~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~ALg~vI~AL~~~~-~hIPYRdSKLTrLLqDsLgGnskT~m 511 (816)
....|+|+|||||||||..+.+ ..+.+.+|+..||+||++|++||.+|.+++ .|||||+||||+||+|+|+|+|+|+|
T Consensus 220 ~~~~s~l~~VDLAGsE~~~~~~-~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~ 298 (325)
T cd01369 220 SKKRGKLFLVDLAGSEKVSKTG-AEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTL 298 (325)
T ss_pred CEEEEEEEEEECCCCCcccccC-CcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEE
Confidence 4578999999999999976654 445566799999999999999999999887 99999999999999999999999999
Q ss_pred EEeeCCCCCCHHHHHHHHHHHHHhccc
Q 003480 512 ISCISPNVGSCEHTLNTLRYADRVKSL 538 (816)
Q Consensus 512 Ia~VSPs~~~~eETLsTLrfA~Rak~I 538 (816)
|+||||...+++||++||+||+|+|+|
T Consensus 299 I~~vsp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 299 IICCSPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred EEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999986
No 17
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=8.4e-71 Score=599.67 Aligned_cols=306 Identities=36% Similarity=0.554 Sum_probs=274.7
Q ss_pred CeEEEEEeCCCCchhhccCCCcEEEEeCC------eEEEeCCCcccccccccceeEEEeeeeeCCCCChHHHhhhhhhch
Q 003480 205 KIRVVVRKRPLNKKELSRKEEDIVTVSDN------ALTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPI 278 (816)
Q Consensus 205 ~IrV~VRvRPl~~~E~~~~~~~iv~v~~~------~v~v~~p~~~~~~~~~~~~~~F~FD~VFd~~asQeeVy~~~v~pL 278 (816)
+|+|+|||||+.+.|. +...++.+.+. .+.+..|... .+.+.|.||+||+++++|++||+.++.|+
T Consensus 1 ~i~V~vRvRP~~~~e~--~~~~~v~~~~~~~~~~~~v~~~~~~~~------~~~~~f~FD~vf~~~~~q~~vy~~~~~pl 72 (319)
T cd01376 1 NVRVVVRVRPFLDCEE--DSSSCVRGIDSDQGQAKSVEIENPRNR------GETKKYQFDAFYGTECTQEDIFSREVKPI 72 (319)
T ss_pred CcEEEEEeCcCCcccc--CCCceEEEeCCCCCcceEEEEeCCCCC------CCccEEecCeEECCCCCHHHHHHHHHHHH
Confidence 5899999999998883 33445544333 5777776422 24578999999999999999999999999
Q ss_pred HHHhhcCCcceEeeccCCCCCCccccC------CCchhHHHHHHHHhccccccCceeEEEEEeEEeeCCeeeccccc-cc
Q 003480 279 IPTIFQRTKATCFAYGQTGSGKTFTMQ------PLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGE-RK 351 (816)
Q Consensus 279 V~~vl~G~NatIfAYGqTGSGKTyTM~------Gl~~ra~~dLf~~l~~~~~~~~~f~V~vSf~EIYnEkV~DLL~~-~~ 351 (816)
|+.+++|+|+||||||||||||||||+ |++|+++++||+.+... ...|.|++||+|||+|+|+|||++ ..
T Consensus 73 v~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~---~~~~~v~~S~~EIy~e~v~DLL~~~~~ 149 (319)
T cd01376 73 VPHLLSGQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQ---AWTGAFSMSYYEIYNEKVYDLLEPAKK 149 (319)
T ss_pred HHHHhCCCceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhc---cccceEEEEEEEEECCEeeEccCCCCC
Confidence 999999999999999999999999996 68999999999988653 357999999999999999999987 56
Q ss_pred cccccccCCCcEEEeccEEEEeccHHHHHHHHHHHHhccCcccCCCCCCCCCceEEEEEEEEeeeccccccccCCCCCCC
Q 003480 352 KLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNES 431 (816)
Q Consensus 352 ~L~ired~~~~v~V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~~~~~~~~~~~~~~~g~~~ 431 (816)
.+.+++++.++++|.|++++.|.+++|+..+|..|.++|.+++|.+|..|||||+||+|+|.+...
T Consensus 150 ~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~-------------- 215 (319)
T cd01376 150 ELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPAS-------------- 215 (319)
T ss_pred CceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECC--------------
Confidence 899999999999999999999999999999999999999999999999999999999999987632
Q ss_pred CceEEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHhhHHHHHHHHHHHHHcCCCCCccCCCCccchhhhhccCCCccEEE
Q 003480 432 RGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSKTVM 511 (816)
Q Consensus 432 ~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~ALg~vI~AL~~~~~hIPYRdSKLTrLLqDsLgGnskT~m 511 (816)
.....|+|+|||||||||..+++ ..+.+.+|+..||+||++|++||.+|..+..|||||+||||+||||+|+|||+|+|
T Consensus 216 ~~~~~s~l~~VDLAGsE~~~~~~-~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~ 294 (319)
T cd01376 216 NIQLEGKLNLIDLAGSEDNRRTG-NEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIM 294 (319)
T ss_pred CceEEEEEEEEECCCCCcccccC-CccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEE
Confidence 13578999999999999976654 44566679999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCHHHHHHHHHHHHHhc
Q 003480 512 ISCISPNVGSCEHTLNTLRYADRVK 536 (816)
Q Consensus 512 Ia~VSPs~~~~eETLsTLrfA~Rak 536 (816)
|+||||...+++|||+||+||+|+|
T Consensus 295 i~~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 295 VANIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred EEEeCCchhhHHHHHHHHHHHHhhC
Confidence 9999999999999999999999986
No 18
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=9.9e-71 Score=602.65 Aligned_cols=315 Identities=36% Similarity=0.514 Sum_probs=277.6
Q ss_pred CeEEEEEeCCCCchhhccCCCcEEEEeCCeEEEeCCCccccc--ccccceeEEEeeeeeCCCCChHHHhhhhhhchHHHh
Q 003480 205 KIRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVDL--TAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPTI 282 (816)
Q Consensus 205 ~IrV~VRvRPl~~~E~~~~~~~iv~v~~~~v~v~~p~~~~~~--~~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV~~v 282 (816)
+|+|+||+||+...+.. ...+..++..++++.|+..... ....+.+.|.||+||++ ++|++||+.++.|+|+.+
T Consensus 1 ~i~V~vRvRP~~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~ 76 (334)
T cd01375 1 TIQVFVRVRPTPTKQGS---SIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSA 76 (334)
T ss_pred CeEEEEECCCCCCCCCc---cEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHH
Confidence 58999999999874421 1223233345888888865442 33456788999999999 999999999999999999
Q ss_pred hcCCcceEeeccCCCCCCccccC---------CCchhHHHHHHHHhccccccCceeEEEEEeEEeeCCeeecccccc---
Q 003480 283 FQRTKATCFAYGQTGSGKTFTMQ---------PLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGER--- 350 (816)
Q Consensus 283 l~G~NatIfAYGqTGSGKTyTM~---------Gl~~ra~~dLf~~l~~~~~~~~~f~V~vSf~EIYnEkV~DLL~~~--- 350 (816)
++|+|+||||||||||||||||+ ||+||++++||..+... .+..|.|++||+|||||+|+|||++.
T Consensus 77 ~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~--~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~ 154 (334)
T cd01375 77 LDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMR--ATKTYTVHVSYLEIYNEQLYDLLGDTPEA 154 (334)
T ss_pred hCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhc--cCcceEEEEEEEEEECCEeecCCCCCccc
Confidence 99999999999999999999996 48899999999998763 35679999999999999999999876
Q ss_pred ----ccccccccCCCcEEEeccEEEEeccHHHHHHHHHHHHhccCcccCCCCCCCCCceEEEEEEEEeeeccccccccCC
Q 003480 351 ----KKLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNN 426 (816)
Q Consensus 351 ----~~L~ired~~~~v~V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~~~~~~~~~~~~~~ 426 (816)
+.+.+++++.++++|.|++++.|.+++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+.....
T Consensus 155 ~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~------- 227 (334)
T cd01375 155 LESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREA------- 227 (334)
T ss_pred cccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCC-------
Confidence 468899999999999999999999999999999999999999999999999999999999998864221
Q ss_pred CCCCCCceEEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHhhHHHHHHHHHHHHHcCCC-CCccCCCCccchhhhhccCC
Q 003480 427 DGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQ-IHIPFRGSKLTEVLRDSFVG 505 (816)
Q Consensus 427 ~g~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~ALg~vI~AL~~~~-~hIPYRdSKLTrLLqDsLgG 505 (816)
.......|+|+|||||||||..+++. .+....|++.||+||++|++||.+|.+++ .|||||+||||+||||+|||
T Consensus 228 ---~~~~~~~s~l~~VDLAGsEr~~~~~~-~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg 303 (334)
T cd01375 228 ---GSEVVRLSKLNLVDLAGSERVSKTGV-SGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGG 303 (334)
T ss_pred ---CCCceEEEEEEEEECCCCCccccccC-chhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCC
Confidence 12256789999999999999777654 44566799999999999999999999988 99999999999999999999
Q ss_pred CccEEEEEeeCCCCCCHHHHHHHHHHHHHhc
Q 003480 506 NSKTVMISCISPNVGSCEHTLNTLRYADRVK 536 (816)
Q Consensus 506 nskT~mIa~VSPs~~~~eETLsTLrfA~Rak 536 (816)
||+|+||+||||+..+++|||+||+||+|++
T Consensus 304 ~~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 304 NCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred CceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999985
No 19
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=1.9e-70 Score=601.42 Aligned_cols=319 Identities=39% Similarity=0.611 Sum_probs=281.2
Q ss_pred CeEEEEEeCCCCchhhccCCCcEEEEeCC--eEEEeCCCcccccccccceeEEEeeeeeCCCCChHHHhhhhhhchHHHh
Q 003480 205 KIRVVVRKRPLNKKELSRKEEDIVTVSDN--ALTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPTI 282 (816)
Q Consensus 205 ~IrV~VRvRPl~~~E~~~~~~~iv~v~~~--~v~v~~p~~~~~~~~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV~~v 282 (816)
+|+|+||+||+++.|...+...++.+.+. .+++.. .+.|.||+||+++++|++||+.++.|+|+.+
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~------------~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~ 69 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGT------------DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGL 69 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecC------------CcEEeccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 69999999999999987777777766554 344432 4689999999999999999999999999999
Q ss_pred hcCCcceEeeccCCCCCCccccCC------------CchhHHHHHHHHhccccccCceeEEEEEeEEeeCCeeecccccc
Q 003480 283 FQRTKATCFAYGQTGSGKTFTMQP------------LPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGER 350 (816)
Q Consensus 283 l~G~NatIfAYGqTGSGKTyTM~G------------l~~ra~~dLf~~l~~~~~~~~~f~V~vSf~EIYnEkV~DLL~~~ 350 (816)
++|+|+||||||||||||||||+| ++||++++||..+.... ....|.|.|||+|||||+|+|||.+.
T Consensus 70 ~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~-~~~~~~v~vS~~EIy~e~v~DLL~~~ 148 (341)
T cd01372 70 FEGYNATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKK-DEPDFQLKVSFLELYNEEVRDLLSPS 148 (341)
T ss_pred hCCCccceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhcc-ccceEEEEEEEEEeECCeeecCCCCc
Confidence 999999999999999999999964 78999999999998743 24679999999999999999999875
Q ss_pred ----ccccccccCCCcEEEeccEEEEeccHHHHHHHHHHHHhccCcccCCCCCCCCCceEEEEEEEEeeeccccccccCC
Q 003480 351 ----KKLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNN 426 (816)
Q Consensus 351 ----~~L~ired~~~~v~V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~~~~~~~~~~~~~~ 426 (816)
..+.+++++.++++|.|++++.|.+++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+......... .
T Consensus 149 ~~~~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~--~ 226 (341)
T cd01372 149 TSEKSPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAP--M 226 (341)
T ss_pred ccCCCCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCcccc--c
Confidence 5789999999999999999999999999999999999999999999999999999999999988764211100 0
Q ss_pred CCCCCCceEEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHhhHHHHHHHHHHHHHcCCC---CCccCCCCccchhhhhcc
Q 003480 427 DGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQ---IHIPFRGSKLTEVLRDSF 503 (816)
Q Consensus 427 ~g~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~ALg~vI~AL~~~~---~hIPYRdSKLTrLLqDsL 503 (816)
..+.......|+|+|||||||||..++.. .+.+.+|+..||+||++|++||++|..++ .|||||+||||+||+|+|
T Consensus 227 ~~~~~~~~~~s~l~~VDLAGsE~~~~~~~-~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~L 305 (341)
T cd01372 227 SGDDKNSTLTSKFHFVDLAGSERLKKTGA-TGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSL 305 (341)
T ss_pred cccCCCceeeEEEEEEECCCCcccccccC-chhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhc
Confidence 11122356789999999999999776554 45566799999999999999999998876 799999999999999999
Q ss_pred CCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhcccc
Q 003480 504 VGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSLS 539 (816)
Q Consensus 504 gGnskT~mIa~VSPs~~~~eETLsTLrfA~Rak~I~ 539 (816)
||+++|+||+||||...+++|||+||+||+|+|+|+
T Consensus 306 gg~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 306 GGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred CCCceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999999985
No 20
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6.7e-71 Score=625.60 Aligned_cols=341 Identities=35% Similarity=0.534 Sum_probs=307.0
Q ss_pred CCCeEEEEEeCCCCchhhccCCCcEEEEeCCeEEEeCCCcccccccccceeEEEeeeeeCCC-------CChHHHhhhhh
Q 003480 203 VAKIRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDER-------VTNDEVYRVTV 275 (816)
Q Consensus 203 ~~~IrV~VRvRPl~~~E~~~~~~~iv~v~~~~v~v~~p~~~~~~~~~~~~~~F~FD~VFd~~-------asQeeVy~~~v 275 (816)
..+|||+|||||++.+|+.....|++.++.+..+++.|.....+......++|.||++|.+- +.|+.||+.++
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG 82 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLG 82 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcc
Confidence 46899999999999999999999999999999888887666555554567899999999654 58999999999
Q ss_pred hchHHHhhcCCcceEeeccCCCCCCccccC------CCchhHHHHHHHHhccccccCceeEEEEEeEEeeCCeeeccccc
Q 003480 276 EPIIPTIFQRTKATCFAYGQTGSGKTFTMQ------PLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGE 349 (816)
Q Consensus 276 ~pLV~~vl~G~NatIfAYGqTGSGKTyTM~------Gl~~ra~~dLf~~l~~~~~~~~~f~V~vSf~EIYnEkV~DLL~~ 349 (816)
.-+|+++|+|||+||||||||||||||||. ||+||.+..||..|......+..|+|.|||+|||||+++|||+|
T Consensus 83 ~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdP 162 (1714)
T KOG0241|consen 83 EGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDP 162 (1714)
T ss_pred hHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCC
Confidence 999999999999999999999999999997 48999999999999987778889999999999999999999997
Q ss_pred c---ccccccccCCCcEEEeccEEEEeccHHHHHHHHHHHHhccCcccCCCCCCCCCceEEEEEEEEeeeccccccccCC
Q 003480 350 R---KKLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNN 426 (816)
Q Consensus 350 ~---~~L~ired~~~~v~V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~~~~~~~~~~~~~~ 426 (816)
+ ..++++++.--|.+|.||++..|+|++|+..++..|+++|++++|+||..|||||+||.|.|.+......
T Consensus 163 k~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~k------ 236 (1714)
T KOG0241|consen 163 KGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLK------ 236 (1714)
T ss_pred CCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccc------
Confidence 5 5689999999999999999999999999999999999999999999999999999999999988753211
Q ss_pred CCCCCCceEEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHhhHHHHHHHHHHHHHcC------CCCCccCCCCccchhhh
Q 003480 427 DGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDN------DQIHIPFRGSKLTEVLR 500 (816)
Q Consensus 427 ~g~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~ALg~vI~AL~~------~~~hIPYRdSKLTrLLq 500 (816)
........+||++||||||||+.+++..+ .+.+|+.+||+||.+||.||.||++ +.++||||||.||+|||
T Consensus 237 --tg~SgeKvsklslVDLAgserasktga~g-~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLk 313 (1714)
T KOG0241|consen 237 --TGHSGEKVSKLSLVDLAGSERASKTGAAG-SRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLK 313 (1714)
T ss_pred --cCcchhheeeeeEEEeccccccccccchh-hhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHH
Confidence 12235568999999999999988887665 4567999999999999999999964 24699999999999999
Q ss_pred hccCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhcccccCCCCCCcCCCCC
Q 003480 501 DSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSLSKSGNTKKDQGQNS 552 (816)
Q Consensus 501 DsLgGnskT~mIa~VSPs~~~~eETLsTLrfA~Rak~I~~~~~~~~~~~~~~ 552 (816)
|+|||||+|+||+||||++.+|+|||+|||||+|+|+|+|...++.+.....
T Consensus 314 D~LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnarv 365 (1714)
T KOG0241|consen 314 DNLGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARV 365 (1714)
T ss_pred hhcCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHHH
Confidence 9999999999999999999999999999999999999999998887665443
No 21
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=4.6e-69 Score=587.71 Aligned_cols=316 Identities=36% Similarity=0.527 Sum_probs=282.8
Q ss_pred CCCeEEEEEeCCCCchhhccCCCcEEEEeCC--e-EEEeCCCcccccccccceeEEEeeeeeCCCCChHHHhhhhhhchH
Q 003480 203 VAKIRVVVRKRPLNKKELSRKEEDIVTVSDN--A-LTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPII 279 (816)
Q Consensus 203 ~~~IrV~VRvRPl~~~E~~~~~~~iv~v~~~--~-v~v~~p~~~~~~~~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV 279 (816)
+++|+|+||+||+.+.|. .....++.+.+. . +.+..+ ..+.+.|.||+||+++++|++||+. +.|+|
T Consensus 1 ~~~i~V~vRirP~~~~e~-~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~f~fD~vf~~~~~q~~v~~~-v~p~v 70 (329)
T cd01366 1 KGNIRVFCRVRPLLPSES-TEYSSVISFPDEDGGTIELSKG--------TGKKKSFSFDRVFDPDASQEDVFEE-VSPLV 70 (329)
T ss_pred CCCEEEEEEcCcCCcccc-CCCccEEEEcCCCceEEEEeCC--------CCCceEEecCEEECCCCCHHHHHHH-HHHHH
Confidence 478999999999999886 344566777665 3 444332 1346789999999999999999997 69999
Q ss_pred HHhhcCCcceEeeccCCCCCCccccCC------CchhHHHHHHHHhccccccCceeEEEEEeEEeeCCeeeccccc----
Q 003480 280 PTIFQRTKATCFAYGQTGSGKTFTMQP------LPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGE---- 349 (816)
Q Consensus 280 ~~vl~G~NatIfAYGqTGSGKTyTM~G------l~~ra~~dLf~~l~~~~~~~~~f~V~vSf~EIYnEkV~DLL~~---- 349 (816)
+.+++|+|+||||||+|||||||||+| ++++++++||..+.....++..|.|++||+|||+|+++|||++
T Consensus 71 ~~~~~G~~~~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~ 150 (329)
T cd01366 71 QSALDGYNVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAP 150 (329)
T ss_pred HHHhCCCceEEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCC
Confidence 999999999999999999999999975 7999999999999876555678999999999999999999987
Q ss_pred cccccccccCCCcEEEeccEEEEeccHHHHHHHHHHHHhccCcccCCCCCCCCCceEEEEEEEEeeeccccccccCCCCC
Q 003480 350 RKKLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGN 429 (816)
Q Consensus 350 ~~~L~ired~~~~v~V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~~~~~~~~~~~~~~~g~ 429 (816)
+..+.+++++.++++|.|++++.|.|++|+..+|..|.++|.++.|.+|..|||||+||+|+|.+....
T Consensus 151 ~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~----------- 219 (329)
T cd01366 151 KKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQ----------- 219 (329)
T ss_pred CCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCC-----------
Confidence 467899999999999999999999999999999999999999999999999999999999999876432
Q ss_pred CCCceEEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHhhHHHHHHHHHHHHHcCCCCCccCCCCccchhhhhccCCCccE
Q 003480 430 ESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSKT 509 (816)
Q Consensus 430 ~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~ALg~vI~AL~~~~~hIPYRdSKLTrLLqDsLgGnskT 509 (816)
......|+|+||||||||+..+.... +.+.+|+..||+||++|++||.+|..+..|||||+||||+||+|+|+|+++|
T Consensus 220 -~~~~~~s~l~~VDLaGsE~~~~~~~~-~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t 297 (329)
T cd01366 220 -TGEQTRGKLNLVDLAGSERLKKSGAT-GDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKT 297 (329)
T ss_pred -CCcEEEEEEEEEECCCCccccccccc-chhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCceE
Confidence 12467899999999999998766544 4555799999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCCCCCHHHHHHHHHHHHHhcccccC
Q 003480 510 VMISCISPNVGSCEHTLNTLRYADRVKSLSKS 541 (816)
Q Consensus 510 ~mIa~VSPs~~~~eETLsTLrfA~Rak~I~~~ 541 (816)
+||+||||...+++||++||+||+|+++|+++
T Consensus 298 ~~i~~vsp~~~~~~etl~tL~~a~~~~~i~~~ 329 (329)
T cd01366 298 LMFVNISPLESNLSETLCSLRFASRVRSVELG 329 (329)
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHHhhcccCC
Confidence 99999999999999999999999999999763
No 22
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=3.6e-69 Score=629.30 Aligned_cols=334 Identities=35% Similarity=0.494 Sum_probs=295.9
Q ss_pred cccccccCCCCCeEEEEEeCCCCchhhccCCCcEEEEeCC-eEEEeCCCcccccccccceeEEEeeeeeCCCCChHHHhh
Q 003480 194 KESNARENNVAKIRVVVRKRPLNKKELSRKEEDIVTVSDN-ALTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYR 272 (816)
Q Consensus 194 ~~~~~~~~~~~~IrV~VRvRPl~~~E~~~~~~~iv~v~~~-~v~v~~p~~~~~~~~~~~~~~F~FD~VFd~~asQeeVy~ 272 (816)
+-+|.....+|+|||+|||||+.+.|.......++..++. .+.+..|..... .+.+.|.||+||+|.++|++||.
T Consensus 304 kL~N~i~eLkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~f~fdkVf~p~~sQ~~VF~ 379 (670)
T KOG0239|consen 304 KLHNEILELKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDK----LEPQSFKFDKVFGPLASQDDVFE 379 (670)
T ss_pred HHHHHHHHhhcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCC----CccccceeeeecCCcccHHHHHH
Confidence 3446677889999999999999999977654555555543 466766653322 12346999999999999999998
Q ss_pred hhhhchHHHhhcCCcceEeeccCCCCCCccccCC-------CchhHHHHHHHHhccccccCceeEEEEEeEEeeCCeeec
Q 003480 273 VTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQP-------LPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFD 345 (816)
Q Consensus 273 ~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM~G-------l~~ra~~dLf~~l~~~~~~~~~f~V~vSf~EIYnEkV~D 345 (816)
. +.|+|.++|+|||+||||||||||||||||.| ++||+++.||..+..... ++.|.+.+||+|||||.|+|
T Consensus 380 e-~~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~-g~~y~~~~s~~EIYNe~i~D 457 (670)
T KOG0239|consen 380 E-VSPLVQSALDGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKS-GWKYDKTVSMLEIYNEAIRD 457 (670)
T ss_pred H-HHHHHHHHhcCcceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhcc-CceEEeeeehhHHHHHHHHH
Confidence 5 89999999999999999999999999999976 789999999999988665 89999999999999999999
Q ss_pred ccccc---ccccccccCCCcEEEeccEEEEeccHHHHHHHHHHHHhccCcccCCCCCCCCCceEEEEEEEEeeecccccc
Q 003480 346 LLGER---KKLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESF 422 (816)
Q Consensus 346 LL~~~---~~L~ired~~~~v~V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~~~~~~~~~~ 422 (816)
||.+. .++.|+.++.+.++|.+++.+.|.+.+++..+++.|..+|++++|.+|.+|||||+||+|+|.......
T Consensus 458 lL~~~~~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t--- 534 (670)
T KOG0239|consen 458 LLSDESYVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINELT--- 534 (670)
T ss_pred hccccccccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccCc---
Confidence 99876 578899999999999999999999999999999999999999999999999999999999997754322
Q ss_pred ccCCCCCCCCceEEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHhhHHHHHHHHHHHHHcCCCCCccCCCCccchhhhhc
Q 003480 423 RRNNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDS 502 (816)
Q Consensus 423 ~~~~~g~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~ALg~vI~AL~~~~~hIPYRdSKLTrLLqDs 502 (816)
.....|+|+|||||||||+.++...+ .+.+|+..||+||++||+||.||..+..||||||||||+||+||
T Consensus 535 ---------~~~~~g~l~LVDLAGSER~~~s~~tG-~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq~s 604 (670)
T KOG0239|consen 535 ---------GIRVTGVLNLVDLAGSERVSKSGVTG-ERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKLTQLLQDS 604 (670)
T ss_pred ---------ccccccceeEeecccCcccCcCCCch-hhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccchHHHhHhh
Confidence 25678999999999999977765554 55679999999999999999999999999999999999999999
Q ss_pred cCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhcccccCCCCCC
Q 003480 503 FVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSLSKSGNTKK 546 (816)
Q Consensus 503 LgGnskT~mIa~VSPs~~~~eETLsTLrfA~Rak~I~~~~~~~~ 546 (816)
|||++||+|+++|||...++.||+++|+||.|++.+..++..+.
T Consensus 605 LGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~~ 648 (670)
T KOG0239|consen 605 LGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSARKQ 648 (670)
T ss_pred hCCccceeeEEEeCccHHHHhhhhhccchHHHhhceeccccccc
Confidence 99999999999999999999999999999999999998876543
No 23
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=3.1e-67 Score=572.11 Aligned_cols=316 Identities=44% Similarity=0.652 Sum_probs=286.5
Q ss_pred CeEEEEEeCCCCchhhccCCCcEEEEeC-CeEEEeCCCcccccccccceeEEEeeeeeCCCCChHHHhhhhhhchHHHhh
Q 003480 205 KIRVVVRKRPLNKKELSRKEEDIVTVSD-NALTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPTIF 283 (816)
Q Consensus 205 ~IrV~VRvRPl~~~E~~~~~~~iv~v~~-~~v~v~~p~~~~~~~~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl 283 (816)
+|+|+||+||+...| ......++.+++ +.|++.+|+.. ...+.+.|.||+||+++++|++||+.++.|+|+.++
T Consensus 1 ~i~V~vRvrP~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~ 75 (328)
T cd00106 1 NIRVVVRIRPLNGRE-SKSEESCITVDDNKTVTLTPPKDG----RKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVL 75 (328)
T ss_pred CeEEEEEcCCCCccc-ccCCCcEEEECCCCEEEEecCccc----cCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHh
Confidence 589999999999877 345667888888 77999887643 234568999999999999999999999999999999
Q ss_pred cCCcceEeeccCCCCCCccccCC------CchhHHHHHHHHhccccccCceeEEEEEeEEeeCCeeeccccc---ccccc
Q 003480 284 QRTKATCFAYGQTGSGKTFTMQP------LPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGE---RKKLC 354 (816)
Q Consensus 284 ~G~NatIfAYGqTGSGKTyTM~G------l~~ra~~dLf~~l~~~~~~~~~f~V~vSf~EIYnEkV~DLL~~---~~~L~ 354 (816)
+|+|+||||||+|||||||||+| ++++++++||..+.........|.|++||+|||+|+|+|||++ ...+.
T Consensus 76 ~G~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~ 155 (328)
T cd00106 76 EGYNGTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLS 155 (328)
T ss_pred CCCceeEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcE
Confidence 99999999999999999999987 9999999999999875444567999999999999999999998 67899
Q ss_pred ccccCCCcEEEeccEEEEeccHHHHHHHHHHHHhccCcccCCCCCCCCCceEEEEEEEEeeeccccccccCCCCCCCCce
Q 003480 355 MREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNESRGK 434 (816)
Q Consensus 355 ired~~~~v~V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~~~~~~~~~~~~~~~g~~~~~~ 434 (816)
+++++.+++++.|++++.|.|++|++.+|..|.++|.++.|..|..|||||+||+|+|.+...... ....
T Consensus 156 i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~----------~~~~ 225 (328)
T cd00106 156 LREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTND----------GRSI 225 (328)
T ss_pred EEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCC----------CccE
Confidence 999999999999999999999999999999999999999999999999999999999988753221 0136
Q ss_pred EEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHhhHHHHHHHHHHHHHcCCC--CCccCCCCccchhhhhccCCCccEEEE
Q 003480 435 VIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQ--IHIPFRGSKLTEVLRDSFVGNSKTVMI 512 (816)
Q Consensus 435 ~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~ALg~vI~AL~~~~--~hIPYRdSKLTrLLqDsLgGnskT~mI 512 (816)
..|+|+||||||+|+..+.+ ..+....|++.||+||.+|++||.+|..+. .|||||+||||+||||+|+|+++|+||
T Consensus 226 ~~s~l~~VDLaGse~~~~~~-~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I 304 (328)
T cd00106 226 KSSKLNLVDLAGSERAKKTG-AEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMI 304 (328)
T ss_pred EEEEEEEEECCCCCcccccC-CchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEE
Confidence 78999999999999987654 455667799999999999999999999888 999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHHHHHHhc
Q 003480 513 SCISPNVGSCEHTLNTLRYADRVK 536 (816)
Q Consensus 513 a~VSPs~~~~eETLsTLrfA~Rak 536 (816)
+||+|...+++||++||+||+|+|
T Consensus 305 ~~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 305 ANISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred EEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999986
No 24
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=1e-67 Score=577.45 Aligned_cols=318 Identities=41% Similarity=0.617 Sum_probs=277.1
Q ss_pred EeCCCCchhhccCCCcEEEEeCCeEEEeCCCcccccccccceeEEEeeeeeCCCCChHHHhhhhhhchHHHhhcCCcceE
Q 003480 211 RKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATC 290 (816)
Q Consensus 211 RvRPl~~~E~~~~~~~iv~v~~~~v~v~~p~~~~~~~~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~NatI 290 (816)
||||++..|...+...++.+.+.. ..................|.||+||+++++|++||+.++.|+|+.+|+|+|+||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i 78 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQD--SNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATI 78 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTE--TEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCc--cccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEE
Confidence 999999999988888877765421 011111122334456789999999999999999999999999999999999999
Q ss_pred eeccCCCCCCccccCC--------CchhHHHHHHHHhcccccc-CceeEEEEEeEEeeCCeeecccccc-----cccccc
Q 003480 291 FAYGQTGSGKTFTMQP--------LPLRAAEDLVRLLHQPVYR-NQRFKLWLSYFEIYGGKLFDLLGER-----KKLCMR 356 (816)
Q Consensus 291 fAYGqTGSGKTyTM~G--------l~~ra~~dLf~~l~~~~~~-~~~f~V~vSf~EIYnEkV~DLL~~~-----~~L~ir 356 (816)
||||+|||||||||+| ++++++++||..+...... ...|.|+|||+|||+|+|+|||++. +.+.++
T Consensus 79 ~ayG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~ 158 (335)
T PF00225_consen 79 FAYGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIR 158 (335)
T ss_dssp EEEESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEE
T ss_pred EeeccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCcccccccccccee
Confidence 9999999999999987 6899999999999875433 4579999999999999999999987 469999
Q ss_pred ccCCCc-EEEeccEEEEeccHHHHHHHHHHHHhccCcccCCCCCCCCCceEEEEEEEEeeeccccccccCCCCCCCCceE
Q 003480 357 EDGRQQ-VCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNESRGKV 435 (816)
Q Consensus 357 ed~~~~-v~V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~~~~~~~~~~~~~~~g~~~~~~~ 435 (816)
+++..+ ++|.|++++.|.+++|++.+|..|.++|.+..|.+|..|||||+||+|+|.+....... ......
T Consensus 159 ~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~--------~~~~~~ 230 (335)
T PF00225_consen 159 EDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSD--------DEESVK 230 (335)
T ss_dssp EETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTT--------EEEEEE
T ss_pred eccccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccc--------ccccee
Confidence 999876 99999999999999999999999999999999999999999999999999987643221 001257
Q ss_pred EEEEEEEeCCCCCCCCCCCCCchhhhHHHHHhhHHHHHHHHHHHHHcCC--CCCccCCCCccchhhhhccCCCccEEEEE
Q 003480 436 IGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDND--QIHIPFRGSKLTEVLRDSFVGNSKTVMIS 513 (816)
Q Consensus 436 ~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~ALg~vI~AL~~~--~~hIPYRdSKLTrLLqDsLgGnskT~mIa 513 (816)
.|+|+||||||+||..+....++++.+|+..||+||.+|++||.+|..+ ..|||||+||||+||||+|+|||+|+||+
T Consensus 231 ~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~ 310 (335)
T PF00225_consen 231 HSRLTFVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIV 310 (335)
T ss_dssp EEEEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEE
T ss_pred ecceeeeecccccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEE
Confidence 8999999999999987776656777789999999999999999999998 99999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHHHHHHhccc
Q 003480 514 CISPNVGSCEHTLNTLRYADRVKSL 538 (816)
Q Consensus 514 ~VSPs~~~~eETLsTLrfA~Rak~I 538 (816)
||||...+++||++||+||+|+|+|
T Consensus 311 ~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 311 CVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp EE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred EcCCccccHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999987
No 25
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=3.3e-66 Score=566.05 Aligned_cols=322 Identities=43% Similarity=0.647 Sum_probs=289.1
Q ss_pred CeEEEEEeCCCCchhhccCCCcEEEEeCC---eEEEeCCCcccccccccceeEEEeeeeeCCCCChHHHhhhhhhchHHH
Q 003480 205 KIRVVVRKRPLNKKELSRKEEDIVTVSDN---ALTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPT 281 (816)
Q Consensus 205 ~IrV~VRvRPl~~~E~~~~~~~iv~v~~~---~v~v~~p~~~~~~~~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV~~ 281 (816)
+|+|+|||||+...|...+...++.+.++ .|++..+... .+.+.|.||+||+++++|++||+.++.|+|+.
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~ 74 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKNR------KEEKKFTFDKVFGATASQEDVFEETAAPLVDS 74 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCCC------CCCeEEecCEEECCCCChHHHHHHHHHHHHHH
Confidence 58999999999999988888888888766 5777665322 34578999999999999999999999999999
Q ss_pred hhcCCcceEeeccCCCCCCccccC------CCchhHHHHHHHHhccccccCceeEEEEEeEEeeCCeeeccccc-ccccc
Q 003480 282 IFQRTKATCFAYGQTGSGKTFTMQ------PLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGE-RKKLC 354 (816)
Q Consensus 282 vl~G~NatIfAYGqTGSGKTyTM~------Gl~~ra~~dLf~~l~~~~~~~~~f~V~vSf~EIYnEkV~DLL~~-~~~L~ 354 (816)
+++|+|+|||+||+|||||||||+ |++++++++||..+.... ....|.|++||+|||+|+|+|||++ +..+.
T Consensus 75 ~~~G~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~-~~~~~~v~~S~~ei~~e~v~DLL~~~~~~l~ 153 (335)
T smart00129 75 VLEGYNATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLE-EGWQFQVKVSYLEIYNEKIRDLLNPSPKKLE 153 (335)
T ss_pred HhcCCceeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcc-cCceEEEEEEEEEEECCEEEECcCCCCCCcE
Confidence 999999999999999999999998 799999999999986532 2567999999999999999999985 45789
Q ss_pred ccccCCCcEEEeccEEEEeccHHHHHHHHHHHHhccCcccCCCCCCCCCceEEEEEEEEeeeccccccccCCCCCCCCce
Q 003480 355 MREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNESRGK 434 (816)
Q Consensus 355 ired~~~~v~V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~~~~~~~~~~~~~~~g~~~~~~ 434 (816)
+++++.+++++.|++++.|.|++|+.++|..|.++|.+++|.+|..|||||+||+|+|.+.... ......
T Consensus 154 i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~----------~~~~~~ 223 (335)
T smart00129 154 IREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKN----------SSSGSG 223 (335)
T ss_pred EEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecC----------CCCCCE
Confidence 9999999999999999999999999999999999999999999999999999999999865211 112357
Q ss_pred EEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHhhHHHHHHHHHHHHHcC--CCCCccCCCCccchhhhhccCCCccEEEE
Q 003480 435 VIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDN--DQIHIPFRGSKLTEVLRDSFVGNSKTVMI 512 (816)
Q Consensus 435 ~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~ALg~vI~AL~~--~~~hIPYRdSKLTrLLqDsLgGnskT~mI 512 (816)
..|+|+||||||+||....+ ..+.+.+|+..||+||.+|++||.+|.+ +..|||||+||||+||+++|+|+++|+||
T Consensus 224 ~~s~l~~VDLaGse~~~~~~-~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i 302 (335)
T smart00129 224 KASKLNLVDLAGSERASKTG-AEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMI 302 (335)
T ss_pred EEEEEEEEECCCCCcccccc-ChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEE
Confidence 89999999999999976654 3445667999999999999999999998 57799999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHHHHHHhcccccCCCC
Q 003480 513 SCISPNVGSCEHTLNTLRYADRVKSLSKSGNT 544 (816)
Q Consensus 513 a~VSPs~~~~eETLsTLrfA~Rak~I~~~~~~ 544 (816)
+||||...+++||++||+||+|+++|++.|..
T Consensus 303 ~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~~ 334 (335)
T smart00129 303 ANISPSLSNLEETLSTLRFASRAKEIKNKAIV 334 (335)
T ss_pred EEcCCCccchHHHHHHHHHHHHHhhcccCCCc
Confidence 99999999999999999999999999998853
No 26
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.6e-61 Score=542.37 Aligned_cols=328 Identities=29% Similarity=0.516 Sum_probs=277.9
Q ss_pred CCCCCeEEEEEeCCCCchhhccCCCcEEEEeCCeEEEeCCCcccccc---cccceeEEEeeeeeCCCCChHHHhhhhhhc
Q 003480 201 NNVAKIRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVDLT---AYVEKHEFCFDAVLDERVTNDEVYRVTVEP 277 (816)
Q Consensus 201 ~~~~~IrV~VRvRPl~~~E~~~~~~~iv~v~~~~v~v~~p~~~~~~~---~~~~~~~F~FD~VFd~~asQeeVy~~~v~p 277 (816)
+....|.||||+||+... .....++..+++.++.+..|....... .....+.|.|-+||+|+++|.+||+.++.|
T Consensus 28 ~~~d~v~v~~rvrP~~~~--~~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~p 105 (809)
T KOG0247|consen 28 ESKDPVLVVCRVRPLSDA--SEDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAP 105 (809)
T ss_pred hhhcchheeEeecCCCCC--ccccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHH
Confidence 445678999999999852 223334444555667777776332211 223467899999999999999999999999
Q ss_pred hHHHhhcCCcceEeeccCCCCCCccccCC------CchhHHHHHHHHhccccc---------------------------
Q 003480 278 IIPTIFQRTKATCFAYGQTGSGKTFTMQP------LPLRAAEDLVRLLHQPVY--------------------------- 324 (816)
Q Consensus 278 LV~~vl~G~NatIfAYGqTGSGKTyTM~G------l~~ra~~dLf~~l~~~~~--------------------------- 324 (816)
+|..++.|.|..+|+||.|||||||||+| |.||++.-||..+....+
T Consensus 106 lV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lkr 185 (809)
T KOG0247|consen 106 LVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLKR 185 (809)
T ss_pred HHHHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999974 889999999987765211
Q ss_pred ------------------------------------cCceeEEEEEeEEeeCCeeecccccc------cc-ccccccCCC
Q 003480 325 ------------------------------------RNQRFKLWLSYFEIYGGKLFDLLGER------KK-LCMREDGRQ 361 (816)
Q Consensus 325 ------------------------------------~~~~f~V~vSf~EIYnEkV~DLL~~~------~~-L~ired~~~ 361 (816)
.+..|.|||||+|||||-|||||.+. .. ..+++|.++
T Consensus 186 ~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~~~ 265 (809)
T KOG0247|consen 186 EAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLREDTNG 265 (809)
T ss_pred hhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhccCC
Confidence 12248999999999999999999753 23 568899999
Q ss_pred cEEEeccEEEEeccHHHHHHHHHHHHhccCcccCCCCCCCCCceEEEEEEEEeeeccccccccCCCCCCCCceEEEEEEE
Q 003480 362 QVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNESRGKVIGKISF 441 (816)
Q Consensus 362 ~v~V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~~~~~~~~~~~~~~~g~~~~~~~~skL~f 441 (816)
.++|.|+++|.|++.+|++++|..|.++|+.++|..|..|||||+||+|.+-+.... ..+.....+.|+|
T Consensus 266 ~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~----------~~s~~i~vSqlsL 335 (809)
T KOG0247|consen 266 NMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRS----------QDSNQITVSQLSL 335 (809)
T ss_pred CeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccc----------cccCceeEEeeee
Confidence 999999999999999999999999999999999999999999999999999765321 1234677899999
Q ss_pred EeCCCCCCCCCCCCCchhhhHHHHHhhHHHHHHHHHHHHHcCC-----CCCccCCCCccchhhhhccCCCccEEEEEeeC
Q 003480 442 IDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDND-----QIHIPFRGSKLTEVLRDSFVGNSKTVMISCIS 516 (816)
Q Consensus 442 VDLAGSER~~~t~~~~~~~~~E~~~INkSL~ALg~vI~AL~~~-----~~hIPYRdSKLTrLLqDsLgGnskT~mIa~VS 516 (816)
||||||||..++.. .+.+++|+.+||.||++||.||.+|+.+ +.+||||+||||++++..|.|..+.+||+||+
T Consensus 336 vDLAGSERt~rtq~-sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vn 414 (809)
T KOG0247|consen 336 VDLAGSERTNRTQN-SGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVN 414 (809)
T ss_pred eecccchhcccccc-hhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecC
Confidence 99999999666654 4566679999999999999999999653 47899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcccccC
Q 003480 517 PNVGSCEHTLNTLRYADRVKSLSKS 541 (816)
Q Consensus 517 Ps~~~~eETLsTLrfA~Rak~I~~~ 541 (816)
|...+|+|+|+.|+||.-+..|...
T Consensus 415 p~~e~YdEnl~vlkFaeiaq~v~v~ 439 (809)
T KOG0247|consen 415 PKAEDYDENLNVLKFAEIAQEVEVA 439 (809)
T ss_pred CchhhHHHHHHHHHHHHhccccccc
Confidence 9999999999999999999988643
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3e-60 Score=551.17 Aligned_cols=309 Identities=37% Similarity=0.553 Sum_probs=273.9
Q ss_pred eCCCCchhhccCCCcEEEEeCCe--EEEeCCCcccccccccceeEEEeeeeeCCCCChHHHhhhhhhchHHHhhcCCcce
Q 003480 212 KRPLNKKELSRKEEDIVTVSDNA--LTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKAT 289 (816)
Q Consensus 212 vRPl~~~E~~~~~~~iv~v~~~~--v~v~~p~~~~~~~~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~Nat 289 (816)
|||+...|...+...|+.+..+. |++. .+..|+||+||+....|.++|+.+|.|+++.+|.|||+|
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig------------~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynat 68 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIG------------KDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNAT 68 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeec------------CCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcce
Confidence 69999999888888777755443 4443 246899999999999999999999999999999999999
Q ss_pred EeeccCCCCCCccccC----------CCchhHHHHHHHHhccccccCceeEEEEEeEEeeCCeeeccccccc---ccccc
Q 003480 290 CFAYGQTGSGKTFTMQ----------PLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGERK---KLCMR 356 (816)
Q Consensus 290 IfAYGqTGSGKTyTM~----------Gl~~ra~~dLf~~l~~~~~~~~~f~V~vSf~EIYnEkV~DLL~~~~---~L~ir 356 (816)
++|||||||||||||. |++|+++..+|..+..... ..|.|.|||+|||++.|+|||.+.+ .+.++
T Consensus 69 vlaygQtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~--~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~ 146 (913)
T KOG0244|consen 69 VLAYGQTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES--FVFRITVSFVELYNEEVLDLLKPSRLKANIKLR 146 (913)
T ss_pred eeeecccCCCceeecccccccccccCCcCcchHHHHHHHHHhhhc--cceeeeeeeeeccchhhhhhcChhhhhhceecc
Confidence 9999999999999993 8999999999999886432 5699999999999999999998542 46677
Q ss_pred ccCCCcEEEeccEEEEeccHHHHHHHHHHHHhccCcccCCCCCCCCCceEEEEEEEEeeeccccccccCCCCCCCCceEE
Q 003480 357 EDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNESRGKVI 436 (816)
Q Consensus 357 ed~~~~v~V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~~~~~~~~~~~~~~~g~~~~~~~~ 436 (816)
+ +++++.+.|++++.|.+..++...|..|...|++++|.||..|||||+||++.+++...... ....+
T Consensus 147 e-~~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~-----------~s~~~ 214 (913)
T KOG0244|consen 147 E-PKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSK-----------RSSFC 214 (913)
T ss_pred c-cCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhc-----------cchhh
Confidence 7 88899999999999999999999999999999999999999999999999999977432111 12457
Q ss_pred EEEEEEeCCCCCCCCCCCCCchhhhHHHHHhhHHHHHHHHHHHHHcCCCC--CccCCCCccchhhhhccCCCccEEEEEe
Q 003480 437 GKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQI--HIPFRGSKLTEVLRDSFVGNSKTVMISC 514 (816)
Q Consensus 437 skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~ALg~vI~AL~~~~~--hIPYRdSKLTrLLqDsLgGnskT~mIa~ 514 (816)
+||+|||||||||.+++.+.+ .+.+||++||.+|++||+||+||...+. |||||+||||+||||+||||+.|+||+|
T Consensus 215 sKlhlVDLAGSER~kkT~a~g-drlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaC 293 (913)
T KOG0244|consen 215 SKLHLVDLAGSERVKKTKAEG-DRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIAC 293 (913)
T ss_pred hhhheeeccccccccccccch-hhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeee
Confidence 999999999999987776554 5567999999999999999999987665 9999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHHhcccccCCCCCCc
Q 003480 515 ISPNVGSCEHTLNTLRYADRVKSLSKSGNTKKD 547 (816)
Q Consensus 515 VSPs~~~~eETLsTLrfA~Rak~I~~~~~~~~~ 547 (816)
|||+..+.+|||+||+||.|+++|++.|..+.+
T Consensus 294 iSpadsn~~EtlnTl~ya~Rak~iknk~vvN~d 326 (913)
T KOG0244|consen 294 ISPADSNAQETLNTLRYADRAKQIKNKPVVNQD 326 (913)
T ss_pred cChhhhhhhhHHHHHHHhhHHHHhccccccccc
Confidence 999999999999999999999999999877653
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.2e-56 Score=518.21 Aligned_cols=317 Identities=38% Similarity=0.585 Sum_probs=275.7
Q ss_pred ccCCCCCeEEEEEeCCCCchhhccCCCcEEEEeCCe-EEEeCCCcccccccccceeEEEeeeeeCCCCChHHHhhhhhhc
Q 003480 199 RENNVAKIRVVVRKRPLNKKELSRKEEDIVTVSDNA-LTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEP 277 (816)
Q Consensus 199 ~~~~~~~IrV~VRvRPl~~~E~~~~~~~iv~v~~~~-v~v~~p~~~~~~~~~~~~~~F~FD~VFd~~asQeeVy~~~v~p 277 (816)
.+....+++++++..|-...+ ..+...+.. +.+... ....|.||+||++.++|++||+.++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~----------~~~~~~fdkvf~~~~~q~~v~e~~~~~ 80 (568)
T COG5059 17 NEKSVSDIKSTIRIIPGELGE------RLINTSKKSHVSLEKS----------KEGTYAFDKVFGPSATQEDVYEETIKP 80 (568)
T ss_pred ceeeecCceEEEeecCCCcch------heeecccccccccccc----------cceEEEEeeccCCCCcHHHHHHHhhhh
Confidence 344567789999999954332 222222221 222211 146899999999999999999999999
Q ss_pred hHHHhhcCCcceEeeccCCCCCCccccC------CCchhHHHHHHHHhccccccCceeEEEEEeEEeeCCeeeccccccc
Q 003480 278 IIPTIFQRTKATCFAYGQTGSGKTFTMQ------PLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGERK 351 (816)
Q Consensus 278 LV~~vl~G~NatIfAYGqTGSGKTyTM~------Gl~~ra~~dLf~~l~~~~~~~~~f~V~vSf~EIYnEkV~DLL~~~~ 351 (816)
+++.++.|||+||||||||||||||||. |++|+++..||+.+..... +..|.|.+||+|||||+++|||.+..
T Consensus 81 l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~-~~~~~v~is~lEiYnEk~~DLl~~~~ 159 (568)
T COG5059 81 LIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSM-TKDFAVSISYLEIYNEKIYDLLSPNE 159 (568)
T ss_pred HHHHHHhcccceEEEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhccc-CcceeeEeehhHHHhhHHHhhccCcc
Confidence 9999999999999999999999999996 4889999999999987543 67899999999999999999998765
Q ss_pred c-ccccccCCCcEEEeccEEEEeccHHHHHHHHHHHHhccCcccCCCCCCCCCceEEEEEEEEeeeccccccccCCCCCC
Q 003480 352 K-LCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNE 430 (816)
Q Consensus 352 ~-L~ired~~~~v~V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~~~~~~~~~~~~~~~g~~ 430 (816)
. +.++++...+|.|.|++++.|.+.+|++.+|++|..+|+++.|.+|..|||||+||++++.+......
T Consensus 160 ~~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~---------- 229 (568)
T COG5059 160 ESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSG---------- 229 (568)
T ss_pred ccccccccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCcc----------
Confidence 5 78999999999999999999999999999999999999999999999999999999999988754332
Q ss_pred CCceEEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHhhHHHHHHHHHHHHHcC--CCCCccCCCCccchhhhhccCCCcc
Q 003480 431 SRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDN--DQIHIPFRGSKLTEVLRDSFVGNSK 508 (816)
Q Consensus 431 ~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~ALg~vI~AL~~--~~~hIPYRdSKLTrLLqDsLgGnsk 508 (816)
....++|+|||||||||...+ .....+.+|+..||+||++||+||.+|.. +..|||||+|||||+|+++|||+|+
T Consensus 230 --~~~~~~l~lvDLagSE~~~~~-~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~ 306 (568)
T COG5059 230 --TSETSKLSLVDLAGSERAART-GNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCN 306 (568)
T ss_pred --ceecceEEEEeeccccccchh-hcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCcc
Confidence 122379999999999998777 45556778999999999999999999987 8899999999999999999999999
Q ss_pred EEEEEeeCCCCCCHHHHHHHHHHHHHhcccccCCCCC
Q 003480 509 TVMISCISPNVGSCEHTLNTLRYADRVKSLSKSGNTK 545 (816)
Q Consensus 509 T~mIa~VSPs~~~~eETLsTLrfA~Rak~I~~~~~~~ 545 (816)
|+|||||+|...++++|.+||+||.|+++|++.+..+
T Consensus 307 ~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~ 343 (568)
T COG5059 307 TRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVN 343 (568)
T ss_pred EEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCccccc
Confidence 9999999999999999999999999999999877543
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=1.9e-45 Score=371.76 Aligned_cols=173 Identities=42% Similarity=0.650 Sum_probs=155.2
Q ss_pred HhhhhhhchHHHhhcCCcceEeeccCCCCCCccccC------CCchhHHHHHHHHhccccccCceeEEEEEeEEeeCCee
Q 003480 270 VYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQ------PLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKL 343 (816)
Q Consensus 270 Vy~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM~------Gl~~ra~~dLf~~l~~~~~~~~~f~V~vSf~EIYnEkV 343 (816)
||+.++ |+|+.+++|+|+||||||||||||||||+ |++|+++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~----------------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD----------------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH-----------------------------
Confidence 999988 99999999999999999999999999998 566766655
Q ss_pred eccccccccccccccCCCcEEEeccEEEEeccHHHHHHHHHHHHhccCcccCCCCCCCCCceEEEEEEEEeeeccccccc
Q 003480 344 FDLLGERKKLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFR 423 (816)
Q Consensus 344 ~DLL~~~~~L~ired~~~~v~V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~~~~~~~~~~~ 423 (816)
++++++.|.++|+++.|.+|..|||||+||+|+|.+......
T Consensus 58 -----------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~--- 99 (186)
T cd01363 58 -----------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALAS--- 99 (186)
T ss_pred -----------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCC---
Confidence 889999999999999999999999999999999987653221
Q ss_pred cCCCCCCCCceEEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHhhHHHHHHHHHHHHHcCCCCCccCCCCccchhhhhcc
Q 003480 424 RNNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSF 503 (816)
Q Consensus 424 ~~~~g~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~ALg~vI~AL~~~~~hIPYRdSKLTrLLqDsL 503 (816)
.......++|+|||||||||....... +.+.+|++.||+||.+|++||.+|.+++.|||||+||||+||||+|
T Consensus 100 ------~~~~~~~s~l~lVDLAGsE~~~~~~~~-~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~~~L 172 (186)
T cd01363 100 ------ATEQPKVGKINLVDLAGSERIDFSGAE-GSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTRLLQDSL 172 (186)
T ss_pred ------CccceeeeeEEEEEccccccccccCCc-hhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHhc
Confidence 122567899999999999997666544 4566799999999999999999999999999999999999999999
Q ss_pred CCCccEEEEEeeCC
Q 003480 504 VGNSKTVMISCISP 517 (816)
Q Consensus 504 gGnskT~mIa~VSP 517 (816)
+|||+|+||+||||
T Consensus 173 ~g~~~t~~i~~vsP 186 (186)
T cd01363 173 GGNSRTLMVACISP 186 (186)
T ss_pred CCCCeEEEEEEeCc
Confidence 99999999999998
No 30
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=97.68 E-value=5.7e-07 Score=106.13 Aligned_cols=248 Identities=23% Similarity=0.191 Sum_probs=146.6
Q ss_pred CCCCCeEEEEEeCCCCchhhccCCC----cEEEEeCCeEEEeCCCcccccccccceeEEEeeeeeCCCCChHHHhhhhhh
Q 003480 201 NNVAKIRVVVRKRPLNKKELSRKEE----DIVTVSDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVE 276 (816)
Q Consensus 201 ~~~~~IrV~VRvRPl~~~E~~~~~~----~iv~v~~~~v~v~~p~~~~~~~~~~~~~~F~FD~VFd~~asQeeVy~~~v~ 276 (816)
++..+++|+|+|+|.......-... ....--.+.+....+ ...+.....|.||.+|.....+..++.. ..
T Consensus 302 gG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~-----~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~ 375 (568)
T COG5059 302 GGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSS-----SDSSREIEEIKFDLSEDRSEIEILVFRE-QS 375 (568)
T ss_pred CCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCc-----CcchHHHHHHHhhhhhhhhhhhhHHHHH-HH
Confidence 4445999999999987442110000 000000011111111 1112234679999999999998888874 56
Q ss_pred chHHHhhcCCcceEeeccCCCCCCccccCC----CchhHHHHHHHHhccccccCceeEEEEEeEEeeCCeeecccccc--
Q 003480 277 PIIPTIFQRTKATCFAYGQTGSGKTFTMQP----LPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGER-- 350 (816)
Q Consensus 277 pLV~~vl~G~NatIfAYGqTGSGKTyTM~G----l~~ra~~dLf~~l~~~~~~~~~f~V~vSf~EIYnEkV~DLL~~~-- 350 (816)
.+++..++| +++|+++++++++||.- +..-.+..++........+.+.+...+-+.++|-..+.++....
T Consensus 376 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 451 (568)
T COG5059 376 QLSQSSLSG----IFAYMQSLKKETETLKSRIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLREEELS 451 (568)
T ss_pred hhhhhhhhh----HHHHHhhhhhhhhcccchhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 777777777 99999999999999953 33333355566555544455556566666666622222222110
Q ss_pred -cc------ccccccCCCcEEEeccEEEEeccHHHHHHHHHHHHhccCcccCCCCCCCCCceEEEEEEEEeeeccccccc
Q 003480 351 -KK------LCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFR 423 (816)
Q Consensus 351 -~~------L~ired~~~~v~V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~~~~~~~~~~~ 423 (816)
.. ..++.+. ..+.........+..... .+...+....+..|..++|+|.+|+.+.........
T Consensus 452 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~--- 521 (568)
T COG5059 452 KKKTKIHKLNKLRHDL------SSLLSSIPEETSDRVESE-KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSSTK--- 521 (568)
T ss_pred ChHHHHHHHHHHHHHH------HHhhhhcchhhhhhhhhh-hhccchhhcccchhhhhcccchhhhhcccchhhhhH---
Confidence 00 0111110 000001111111111111 556788889999999999999999887644322111
Q ss_pred cCCCCCCCCceEEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHhhHHHHHHHHHHHHHc
Q 003480 424 RNNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALD 482 (816)
Q Consensus 424 ~~~~g~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~ALg~vI~AL~ 482 (816)
... +..|||||+||. .. ...+.+..+...+|++|..++.+|.++.
T Consensus 522 ----------~~~--~n~~~~~~~e~~-~s-~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 522 ----------ELS--LNQVDLAGSERK-VS-QSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred ----------HHH--hhhhhccccccc-hh-hhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 111 799999999996 43 3444566799999999999999998764
No 31
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=95.45 E-value=0.0087 Score=50.44 Aligned_cols=54 Identities=30% Similarity=0.513 Sum_probs=48.7
Q ss_pred HHHHHHHHhCccccccccccCCCCc-ccchhhhh---ccccccchHHHHHHHHHHHhh
Q 003480 39 VMARWLQSAGLQHLASPLASNGIDH-RLLPNLLM---QGYGAQSAEEKQRLFKLMRNL 92 (816)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 92 (816)
=++.||.+.|+.|+++.|...||+. ..|+.+.. ...|+.+...++||.+.|+.|
T Consensus 8 ~v~~WL~~~gl~~y~~~f~~~~i~g~~~L~~l~~~~L~~lGI~~~~~r~kll~~i~~L 65 (66)
T PF07647_consen 8 DVAEWLKSLGLEQYADNFRENGIDGLEDLLQLTEEDLKELGITNLGHRRKLLSAIQEL 65 (66)
T ss_dssp HHHHHHHHTTCGGGHHHHHHTTCSHHHHHTTSCHHHHHHTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCcHHHHHHHHHcCCcHHHHHhhCCHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 4789999999999999999999999 88887766 568999999999999999876
No 32
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=94.30 E-value=0.048 Score=63.46 Aligned_cols=85 Identities=22% Similarity=0.385 Sum_probs=59.2
Q ss_pred EEEeeeeeCCCCChHHHhhhhhhchHHHhhcCCcceEeeccCCCCCCccccCCCc-------------hhHHHHHHHHhc
Q 003480 254 EFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPLP-------------LRAAEDLVRLLH 320 (816)
Q Consensus 254 ~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM~Gl~-------------~ra~~dLf~~l~ 320 (816)
.|..-.-|.|.-+|-+ ++..||+.+-.|...-+ -.|.|||||||||--++ --.+..||..+.
T Consensus 4 ~F~l~s~f~PaGDQP~----AI~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk 78 (663)
T COG0556 4 PFKLHSPFKPAGDQPE----AIAELVEGIENGLKHQT-LLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEFK 78 (663)
T ss_pred ceEeccCCCCCCCcHH----HHHHHHHHHhcCceeeE-EeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHHH
Confidence 5677777888888863 56677777776655433 46999999999994321 234556777776
Q ss_pred cccccCceeEEEEEeEEeeCCeee
Q 003480 321 QPVYRNQRFKLWLSYFEIYGGKLF 344 (816)
Q Consensus 321 ~~~~~~~~f~V~vSf~EIYnEkV~ 344 (816)
. .+.+..+..+||||.-|.-.-|
T Consensus 79 ~-fFP~NaVEYFVSYYDYYQPEAY 101 (663)
T COG0556 79 E-FFPENAVEYFVSYYDYYQPEAY 101 (663)
T ss_pred H-hCcCcceEEEeeeccccCcccc
Confidence 5 3445567889999999986543
No 33
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=94.21 E-value=0.081 Score=61.76 Aligned_cols=84 Identities=13% Similarity=0.143 Sum_probs=77.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003480 727 GNINALLEEEEALIAAHRKEIEDTMEIVREEMKLLAEVEQPGSLIDNYVTQLSFVLSRKAASLVSLQARLARFQHRLKEQ 806 (816)
Q Consensus 727 e~i~~ileeEE~lI~~HR~~ie~~~elv~eEm~LL~~vd~pg~diD~Yv~~L~~iL~~K~~~i~~Lq~~l~~F~~~L~eE 806 (816)
..+..+.+.++.++..++..+...+.|++-+..+..+.+.|.+|++-|+.+.+.+|+|+++++..+|..+..+...+.+|
T Consensus 590 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~k~~s~l~q~~~~~~~~~~~~~~~~~~~~~e 669 (676)
T KOG0246|consen 590 SEREEASEHREVLVKEVRNSLNRSEKWIRLDRPIQSKTESVSSDMPIVAHKAESDLEQEEDLLAALRKEVKDTLNTVLAE 669 (676)
T ss_pred cchhhhhhhHHHHHhhhccccccccccccccchhhhcccccccCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556777789999999999999999999888877888999999999999999999999999999999999999999999
Q ss_pred HHHh
Q 003480 807 EILS 810 (816)
Q Consensus 807 E~ls 810 (816)
+.++
T Consensus 670 ~~~~ 673 (676)
T KOG0246|consen 670 EKVL 673 (676)
T ss_pred hhhh
Confidence 9887
No 34
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=92.61 E-value=0.03 Score=58.67 Aligned_cols=50 Identities=28% Similarity=0.460 Sum_probs=31.2
Q ss_pred eEEEeeeeeCCCCChHHHhhhhhhchHHHhhcCCcceEeeccCCCCCCccccC
Q 003480 253 HEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 253 ~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM~ 305 (816)
..|+||.-+.. ..|+.+|. .+..+.+.--..+| .+|-||++|+||||-|.
T Consensus 3 ~~~tFdnfv~g-~~N~~a~~-~~~~ia~~~~~~~~-~l~l~G~~G~GKTHLL~ 52 (219)
T PF00308_consen 3 PKYTFDNFVVG-ESNELAYA-AAKAIAENPGERYN-PLFLYGPSGLGKTHLLQ 52 (219)
T ss_dssp TT-SCCCS--T-TTTHHHHH-HHHHHHHSTTTSSS-EEEEEESTTSSHHHHHH
T ss_pred CCCccccCCcC-CcHHHHHH-HHHHHHhcCCCCCC-ceEEECCCCCCHHHHHH
Confidence 36899987654 45777776 34444444111233 47899999999999874
No 35
>cd00166 SAM Sterile alpha motif.; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.
Probab=92.27 E-value=0.078 Score=43.52 Aligned_cols=54 Identities=31% Similarity=0.522 Sum_probs=46.7
Q ss_pred HHHHHHHHhCccccccccccCCCCcccchhhhh---ccccccchHHHHHHHHHHHhh
Q 003480 39 VMARWLQSAGLQHLASPLASNGIDHRLLPNLLM---QGYGAQSAEEKQRLFKLMRNL 92 (816)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 92 (816)
-++.||.+.|+.|++..|...+++...|+.+.. ...|+.....++||.+.|+.|
T Consensus 6 ~V~~wL~~~~~~~y~~~f~~~~i~g~~L~~l~~~dL~~lgi~~~g~r~~i~~~i~~l 62 (63)
T cd00166 6 DVAEWLESLGLGQYADNFRENGIDGDLLLLLTEEDLKELGITLPGHRKKILKAIQKL 62 (63)
T ss_pred HHHHHHHHcChHHHHHHHHHcCCCHHHHhHCCHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 478899999999999999999998888877755 356999999999999988765
No 36
>smart00454 SAM Sterile alpha motif. Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation.
Probab=90.39 E-value=0.16 Score=42.06 Aligned_cols=56 Identities=30% Similarity=0.564 Sum_probs=47.6
Q ss_pred HHHHHHHHHhCccccccccccCCCCcccchhhh----hccccccchHHHHHHHHHHHhhc
Q 003480 38 AVMARWLQSAGLQHLASPLASNGIDHRLLPNLL----MQGYGAQSAEEKQRLFKLMRNLN 93 (816)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 93 (816)
.-+..||+..|+.|+...|...+|+...|..+. ....|+.+...|+||.+-|+.|.
T Consensus 7 ~~v~~wL~~~g~~~y~~~f~~~~i~g~~ll~~~~~~~l~~lgi~~~~~r~~ll~~i~~l~ 66 (68)
T smart00454 7 ESVADWLESIGLEQYADNFRKNGIDGALLLLLTSEEDLKELGITKLGHRKKILKAIQKLK 66 (68)
T ss_pred HHHHHHHHHCChHHHHHHHHHCCCCHHHHHhcChHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 347789999999999999999999987776666 25689999999999999887763
No 37
>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....
Probab=90.19 E-value=0.21 Score=41.80 Aligned_cols=55 Identities=24% Similarity=0.439 Sum_probs=46.2
Q ss_pred HHHHHHHHHhCccccccccccCCCCcccchhhhh---ccccccchHHHHHHHHHHHhh
Q 003480 38 AVMARWLQSAGLQHLASPLASNGIDHRLLPNLLM---QGYGAQSAEEKQRLFKLMRNL 92 (816)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 92 (816)
.-++.||++.|+++++..|...-||.+.|..|.. ...|+..+..+.||++.|+.|
T Consensus 6 ~~V~~WL~~~~l~~y~~~F~~~~i~g~~L~~lt~~dL~~lgi~~~ghr~ki~~~i~~L 63 (64)
T PF00536_consen 6 EDVSEWLKSLGLEQYAENFEKNYIDGEDLLSLTEEDLEELGITKLGHRKKILRAIQKL 63 (64)
T ss_dssp HHHHHHHHHTTGGGGHHHHHHTTSSHHHHTTSCHHHHHHTT-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCchHHHHHhcCHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 3478999999999999999777788888877776 347999999999999999876
No 38
>PRK06893 DNA replication initiation factor; Validated
Probab=88.80 E-value=0.2 Score=52.70 Aligned_cols=50 Identities=10% Similarity=0.210 Sum_probs=33.1
Q ss_pred eEEEeeeeeCCCCChHHHhhhhhhchHHHhhcCCcceEeeccCCCCCCccccCCCc
Q 003480 253 HEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPLP 308 (816)
Q Consensus 253 ~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM~Gl~ 308 (816)
..++||..+... ++.-+. .+...+-.+++..++-||++|+||||.+..+.
T Consensus 11 ~~~~fd~f~~~~-~~~~~~-----~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~ 60 (229)
T PRK06893 11 DDETLDNFYADN-NLLLLD-----SLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVS 60 (229)
T ss_pred CcccccccccCC-hHHHHH-----HHHHHhhccCCCeEEEECCCCCCHHHHHHHHH
Confidence 468899988654 332222 12233334677789999999999999985433
No 39
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.74 E-value=0.27 Score=54.13 Aligned_cols=30 Identities=30% Similarity=0.558 Sum_probs=27.0
Q ss_pred hhchHHHhhcCCcceEeeccCCCCCCcccc
Q 003480 275 VEPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 275 v~pLV~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
+.+++..+++--++.|+.-|+||||||.||
T Consensus 113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTl 142 (353)
T COG2805 113 LPPIVRELAESPRGLILVTGPTGSGKSTTL 142 (353)
T ss_pred CCHHHHHHHhCCCceEEEeCCCCCcHHHHH
Confidence 466777888889999999999999999999
No 40
>PRK06526 transposase; Provisional
Probab=87.35 E-value=0.28 Score=52.80 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=27.5
Q ss_pred eCCCCChHHHhhhhhhchHHHhhcCCcceEeeccCCCCCCccccCCCch
Q 003480 261 LDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPLPL 309 (816)
Q Consensus 261 Fd~~asQeeVy~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM~Gl~~ 309 (816)
+.+......+........++ .+.| |+.||++|+||||.+.++..
T Consensus 77 ~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~al~~ 120 (254)
T PRK06526 77 HQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIGLGI 120 (254)
T ss_pred cCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHHHHH
Confidence 44444555454433334443 3444 79999999999999966543
No 41
>PRK06620 hypothetical protein; Validated
Probab=87.29 E-value=0.28 Score=51.40 Aligned_cols=50 Identities=22% Similarity=0.372 Sum_probs=33.9
Q ss_pred eeEEEeeeeeCCCCChHHHhhhhhhchHHHhhcCCc---ceEeeccCCCCCCccccC
Q 003480 252 KHEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTK---ATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 252 ~~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N---atIfAYGqTGSGKTyTM~ 305 (816)
...|+||..+.. .+|...|.. +..+.+. . |+| -.++-||++||||||.+.
T Consensus 10 ~~~~tfd~Fvvg-~~N~~a~~~-~~~~~~~-~-~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 10 SSKYHPDEFIVS-SSNDQAYNI-IKNWQCG-F-GVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCCchhhEec-ccHHHHHHH-HHHHHHc-c-ccCCCcceEEEECCCCCCHHHHHH
Confidence 456889887765 346667764 3333331 1 343 359999999999999985
No 42
>PRK12377 putative replication protein; Provisional
Probab=86.24 E-value=0.37 Score=51.79 Aligned_cols=51 Identities=12% Similarity=0.174 Sum_probs=35.4
Q ss_pred EEeeeeeCCCCChHHHhhhhhhchHHHhhcCCcceEeeccCCCCCCccccCCC
Q 003480 255 FCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPL 307 (816)
Q Consensus 255 F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM~Gl 307 (816)
.+||........|..++. .+..++..+..+. ..++-||++|+||||.+..+
T Consensus 71 ~tFdnf~~~~~~~~~a~~-~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~AI 121 (248)
T PRK12377 71 CSFANYQVQNDGQRYALS-QAKSIADELMTGC-TNFVFSGKPGTGKNHLAAAI 121 (248)
T ss_pred CCcCCcccCChhHHHHHH-HHHHHHHHHHhcC-CeEEEECCCCCCHHHHHHHH
Confidence 356665444456666776 4666777665543 56889999999999998543
No 43
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=85.98 E-value=0.27 Score=59.08 Aligned_cols=53 Identities=19% Similarity=0.343 Sum_probs=35.5
Q ss_pred eeEEEeeeeeCCCCChHHHhhhhhhchHHHhhcCCcceEeeccCCCCCCccccCCC
Q 003480 252 KHEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPL 307 (816)
Q Consensus 252 ~~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM~Gl 307 (816)
...|+||..+-.. .+..+|. .+..+++..-..+|. ||-||.+|+||||.+..+
T Consensus 282 ~~~~TFDnFvvG~-sN~~A~a-aa~avae~~~~~~Np-L~LyG~sGsGKTHLL~AI 334 (617)
T PRK14086 282 NPKYTFDTFVIGA-SNRFAHA-AAVAVAEAPAKAYNP-LFIYGESGLGKTHLLHAI 334 (617)
T ss_pred CCCCCHhhhcCCC-ccHHHHH-HHHHHHhCccccCCc-EEEECCCCCCHHHHHHHH
Confidence 3568998766433 4555664 344555543345675 899999999999999543
No 44
>PRK08116 hypothetical protein; Validated
Probab=84.98 E-value=0.38 Score=52.12 Aligned_cols=52 Identities=15% Similarity=0.340 Sum_probs=36.0
Q ss_pred eEEEeeeeeCCCCChHHHhhhhhhchHHHhhc--CCcceEeeccCCCCCCccccCC
Q 003480 253 HEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQ--RTKATCFAYGQTGSGKTFTMQP 306 (816)
Q Consensus 253 ~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~--G~NatIfAYGqTGSGKTyTM~G 306 (816)
..++||.-. .+..+...|. .+...++.+.+ ..+..++-||.+|+||||.+..
T Consensus 80 ~~~tFdnf~-~~~~~~~a~~-~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~a 133 (268)
T PRK08116 80 RNSTFENFL-FDKGSEKAYK-IARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAAC 133 (268)
T ss_pred Hhcchhccc-CChHHHHHHH-HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHH
Confidence 356777644 3455666776 46667776543 3455699999999999999843
No 45
>PRK08084 DNA replication initiation factor; Provisional
Probab=83.98 E-value=0.58 Score=49.51 Aligned_cols=48 Identities=13% Similarity=0.351 Sum_probs=31.7
Q ss_pred eEEEeeeeeCCCCChHHHhhhhhhchHHHhhcCCcceEeeccCCCCCCccccCC
Q 003480 253 HEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQP 306 (816)
Q Consensus 253 ~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM~G 306 (816)
..|+||.-+.. .|..++.. +..+.. ......++-||++|+||||.+..
T Consensus 17 ~~~~fd~f~~~--~n~~a~~~-l~~~~~---~~~~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 17 DDETFASFYPG--DNDSLLAA-LQNALR---QEHSGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred CcCCccccccC--ccHHHHHH-HHHHHh---CCCCCeEEEECCCCCCHHHHHHH
Confidence 45788865544 56666653 333332 22335799999999999999954
No 46
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=83.90 E-value=0.42 Score=55.41 Aligned_cols=51 Identities=24% Similarity=0.382 Sum_probs=34.2
Q ss_pred eeEEEeeeeeCCCCChHHHhhhhhhchHHHhhcCCcceEeeccCCCCCCccccCC
Q 003480 252 KHEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQP 306 (816)
Q Consensus 252 ~~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM~G 306 (816)
...|+||.-+-. ..+...|.. +..+.+. -..+|. +|-||++|+||||.|..
T Consensus 99 ~~~~tFdnFv~g-~~n~~a~~~-~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~a 149 (440)
T PRK14088 99 NPDYTFENFVVG-PGNSFAYHA-ALEVAKN-PGRYNP-LFIYGGVGLGKTHLLQS 149 (440)
T ss_pred CCCCcccccccC-CchHHHHHH-HHHHHhC-cCCCCe-EEEEcCCCCcHHHHHHH
Confidence 356899887743 456667764 3333332 112564 99999999999999943
No 47
>PRK09087 hypothetical protein; Validated
Probab=83.23 E-value=0.66 Score=49.00 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=31.7
Q ss_pred eEEEeeeeeCCCCChHHHhhhhhhchHHHhhcCCcceEeeccCCCCCCccccC
Q 003480 253 HEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 253 ~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM~ 305 (816)
..|+||.-+... .|..+|.. +.....-.+-.++-||++||||||.+.
T Consensus 16 ~~~~~~~Fi~~~-~N~~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 16 PAYGRDDLLVTE-SNRAAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCChhceeecC-chHHHHHH-----HHhcccCCCCeEEEECCCCCCHHHHHH
Confidence 467888877543 35557763 222222235568999999999999985
No 48
>PRK05642 DNA replication initiation factor; Validated
Probab=82.66 E-value=0.69 Score=48.96 Aligned_cols=51 Identities=18% Similarity=0.294 Sum_probs=29.8
Q ss_pred eEEEeeeeeCCCCChHHHhhhhhhchHHHhhcCCcceEeeccCCCCCCccccCC
Q 003480 253 HEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQP 306 (816)
Q Consensus 253 ~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM~G 306 (816)
..|+||.-+.. .+..++.. +..+.+..-..-.-.++-||.+|+||||-+..
T Consensus 14 ~~~tfdnF~~~--~~~~a~~~-~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a 64 (234)
T PRK05642 14 DDATFANYYPG--ANAAALGY-VERLCEADAGWTESLIYLWGKDGVGRSHLLQA 64 (234)
T ss_pred CcccccccCcC--ChHHHHHH-HHHHhhccccCCCCeEEEECCCCCCHHHHHHH
Confidence 46899987743 23434432 22222211111134688999999999999843
No 49
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=82.32 E-value=0.57 Score=53.41 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=31.7
Q ss_pred eEEEeeeeeCCCCChHHHhhhhhhchHHHhhcCCcceEeeccCCCCCCccccC
Q 003480 253 HEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 253 ~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM~ 305 (816)
..|+||...- ...+...|. .+..+...--..+| .++-||++|+||||.+.
T Consensus 105 ~~~tfd~fi~-g~~n~~a~~-~~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~ 154 (405)
T TIGR00362 105 PKYTFDNFVV-GKSNRLAHA-AALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 154 (405)
T ss_pred CCCccccccc-CCcHHHHHH-HHHHHHhCcCccCC-eEEEECCCCCcHHHHHH
Confidence 4688988442 245666665 34444443111233 47889999999999984
No 50
>PRK07952 DNA replication protein DnaC; Validated
Probab=81.68 E-value=0.69 Score=49.62 Aligned_cols=51 Identities=14% Similarity=0.135 Sum_probs=32.6
Q ss_pred EEEeeeeeCCCCChHHHhhhhhhchHHHhhcCCcceEeeccCCCCCCccccCC
Q 003480 254 EFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQP 306 (816)
Q Consensus 254 ~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM~G 306 (816)
..+||...-....|..++.. +...++.+..+. ..++-||.+|+||||.+..
T Consensus 68 ~~tFdnf~~~~~~q~~al~~-a~~~~~~~~~~~-~~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 68 NCSFENYRVECEGQMNALSK-ARQYVEEFDGNI-ASFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred CCccccccCCCchHHHHHHH-HHHHHHhhccCC-ceEEEECCCCCCHHHHHHH
Confidence 34666544334456666653 445555543332 4789999999999999854
No 51
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=81.68 E-value=0.59 Score=54.17 Aligned_cols=51 Identities=20% Similarity=0.276 Sum_probs=32.6
Q ss_pred eEEEeeeeeCCCCChHHHhhhhhhchHHHhhcCCcceEeeccCCCCCCccccCC
Q 003480 253 HEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQP 306 (816)
Q Consensus 253 ~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM~G 306 (816)
..|+||.-.-. ..+...|.. +..+.+.--..+| .+|-||++|+||||.+..
T Consensus 117 ~~~tfd~fv~g-~~n~~a~~~-~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~a 167 (450)
T PRK00149 117 PKYTFDNFVVG-KSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 167 (450)
T ss_pred CCCcccccccC-CCcHHHHHH-HHHHHhCcCccCC-eEEEECCCCCCHHHHHHH
Confidence 56888874432 356666663 4444443212234 588899999999999953
No 52
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=79.89 E-value=2.4 Score=48.21 Aligned_cols=26 Identities=31% Similarity=0.562 Sum_probs=19.4
Q ss_pred HHHhhcCC-cceEeeccCCCCCCcccc
Q 003480 279 IPTIFQRT-KATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 279 V~~vl~G~-NatIfAYGqTGSGKTyTM 304 (816)
+..++.|. ...++.||.||||||.|+
T Consensus 33 l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 33 LAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 44444443 334999999999999998
No 53
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=79.73 E-value=1.1 Score=49.91 Aligned_cols=27 Identities=33% Similarity=0.635 Sum_probs=20.3
Q ss_pred hHHHhhc-CCcceEeeccCCCCCCcccc
Q 003480 278 IIPTIFQ-RTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 278 LV~~vl~-G~NatIfAYGqTGSGKTyTM 304 (816)
.+..++. +...+++-||++|+|||+++
T Consensus 30 ~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 30 ALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 3344444 45568999999999999987
No 54
>PRK08181 transposase; Validated
Probab=79.59 E-value=0.97 Score=49.21 Aligned_cols=24 Identities=21% Similarity=0.477 Sum_probs=18.8
Q ss_pred cCCcceEeeccCCCCCCccccCCCch
Q 003480 284 QRTKATCFAYGQTGSGKTFTMQPLPL 309 (816)
Q Consensus 284 ~G~NatIfAYGqTGSGKTyTM~Gl~~ 309 (816)
.|.| |+-||++|+||||-+.++..
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~Aia~ 128 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAAIGL 128 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHHHHH
Confidence 4444 89999999999999865443
No 55
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=79.35 E-value=1.1 Score=41.16 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=19.1
Q ss_pred hHHHhhcCCcceEeeccCCCCCCcccc
Q 003480 278 IIPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 278 LV~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
+...+.......++-+|++|+|||+++
T Consensus 10 i~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 10 LREALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 333333334557889999999999877
No 56
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=78.80 E-value=1.1 Score=52.33 Aligned_cols=49 Identities=22% Similarity=0.389 Sum_probs=32.0
Q ss_pred EEEeeeeeCCCCChHHHhhhhhhchHHHhhcCCcceEeeccCCCCCCccccC
Q 003480 254 EFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 254 ~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM~ 305 (816)
.|+||.-... .+++..|. .+..++..-=..+| .+|-||.+|+||||.|.
T Consensus 111 ~~tFdnFv~g-~~n~~A~~-aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~ 159 (450)
T PRK14087 111 ENTFENFVIG-SSNEQAFI-AVQTVSKNPGISYN-PLFIYGESGMGKTHLLK 159 (450)
T ss_pred ccchhcccCC-CcHHHHHH-HHHHHHhCcCcccC-ceEEECCCCCcHHHHHH
Confidence 5899986644 35666775 34444432111234 58999999999999994
No 57
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=78.78 E-value=0.91 Score=53.16 Aligned_cols=30 Identities=30% Similarity=0.411 Sum_probs=25.3
Q ss_pred hchHHHhhcCCcceEeeccCCCCCCccccC
Q 003480 276 EPIIPTIFQRTKATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 276 ~pLV~~vl~G~NatIfAYGqTGSGKTyTM~ 305 (816)
...+..++..-++-|+.-|+||||||.||+
T Consensus 247 ~~~~~~~~~~p~GliLvTGPTGSGKTTTLY 276 (500)
T COG2804 247 LARLLRLLNRPQGLILVTGPTGSGKTTTLY 276 (500)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCCCHHHHHH
Confidence 334567778889999999999999999994
No 58
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=78.69 E-value=1.3 Score=45.75 Aligned_cols=47 Identities=21% Similarity=0.405 Sum_probs=31.4
Q ss_pred eEEEeeeeeCCCCChHHHhhhhhhchHHHhhcCCcceEeeccCCCCCCccccC
Q 003480 253 HEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 253 ~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM~ 305 (816)
..++||..... .+..+++. ++.++ .......|+-||++|+||||.+.
T Consensus 10 ~~~~~~~~~~~--~~~~~~~~-l~~~~---~~~~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 10 DDPTFDNFYAG--GNAELLAA-LRQLA---AGKGDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CchhhcCcCcC--CcHHHHHH-HHHHH---hcCCCCeEEEECCCCCCHHHHHH
Confidence 45788776632 44555553 23322 24567789999999999999984
No 59
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=78.54 E-value=1.3 Score=46.18 Aligned_cols=49 Identities=18% Similarity=0.351 Sum_probs=31.6
Q ss_pred eeEEEeeeeeCCCCChHHHhhhhhhchHHHhhcCCcceEeeccCCCCCCccccC
Q 003480 252 KHEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 252 ~~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM~ 305 (816)
...|+||..+.. .+..++. .++.++.. ......++-||.+|+||||.+.
T Consensus 12 ~~~~~~d~f~~~--~~~~~~~-~l~~~~~~--~~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 12 PPPPTFDNFVAG--ENAELVA-RLRELAAG--PVADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred CChhhhcccccC--CcHHHHH-HHHHHHhc--cCCCCeEEEECCCCCCHHHHHH
Confidence 346889988732 2334443 34444431 2345679999999999999884
No 60
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=78.01 E-value=2.8 Score=47.37 Aligned_cols=115 Identities=17% Similarity=0.293 Sum_probs=65.5
Q ss_pred eEEEEEeCCCCchhhccCCCcEEEEeCCeEEE---eCCCcccccc--cccceeEEEeeeeeCCCCChHHHhhhhhhchHH
Q 003480 206 IRVVVRKRPLNKKELSRKEEDIVTVSDNALTV---HEPKLKVDLT--AYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIP 280 (816)
Q Consensus 206 IrV~VRvRPl~~~E~~~~~~~iv~v~~~~v~v---~~p~~~~~~~--~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV~ 280 (816)
-+.+|++.+....+.- ...+.|.++.++.+| ..+....-.+ ...+...-+|+-|=+-+..-++|.+.+.-||.+
T Consensus 95 ~~~vV~i~~~vd~~~L-~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~ 173 (406)
T COG1222 95 PKFVVNILSFVDRDLL-EPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKN 173 (406)
T ss_pred CeEEEeccCCcCHHHc-CCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhccCHHHHHHHHHHHhcccccC
Confidence 3667777777666543 223445555444222 2221110000 011122334455544444457778777778875
Q ss_pred -Hhhc--CCc--ceEeeccCCCCCCccccC-----------------------CCchhHHHHHHHHhcc
Q 003480 281 -TIFQ--RTK--ATCFAYGQTGSGKTFTMQ-----------------------PLPLRAAEDLVRLLHQ 321 (816)
Q Consensus 281 -~vl~--G~N--atIfAYGqTGSGKTyTM~-----------------------Gl~~ra~~dLf~~l~~ 321 (816)
.+|+ |.. -.|+-||+.|+|||-... |-.+|.++++|.+..+
T Consensus 174 PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lAre 242 (406)
T COG1222 174 PELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELARE 242 (406)
T ss_pred HHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhh
Confidence 5554 443 458999999999986541 5568999999998765
No 61
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=77.94 E-value=1.1 Score=43.83 Aligned_cols=29 Identities=28% Similarity=0.379 Sum_probs=19.8
Q ss_pred hHHHhhcC-CcceEeeccCCCCCCccccCC
Q 003480 278 IIPTIFQR-TKATCFAYGQTGSGKTFTMQP 306 (816)
Q Consensus 278 LV~~vl~G-~NatIfAYGqTGSGKTyTM~G 306 (816)
+++.+-.. ....++..++||||||++|..
T Consensus 15 i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 15 IINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 33433333 355667778999999999963
No 62
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=77.20 E-value=1.6 Score=49.22 Aligned_cols=26 Identities=27% Similarity=0.524 Sum_probs=19.5
Q ss_pred HHHhhc-CCcceEeeccCCCCCCcccc
Q 003480 279 IPTIFQ-RTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 279 V~~vl~-G~NatIfAYGqTGSGKTyTM 304 (816)
+...+. +....++-||++|+|||+++
T Consensus 46 l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 46 LRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred HHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 333343 45567899999999999988
No 63
>PRK06835 DNA replication protein DnaC; Validated
Probab=76.50 E-value=1.3 Score=49.68 Aligned_cols=38 Identities=24% Similarity=0.466 Sum_probs=26.9
Q ss_pred HHHhhhhhhchHHHhhcCCcceEeeccCCCCCCccccCCC
Q 003480 268 DEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPL 307 (816)
Q Consensus 268 eeVy~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM~Gl 307 (816)
..+++ .+...|+.+-... -.++-||++|+||||.+..+
T Consensus 166 ~~~~~-~~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~aI 203 (329)
T PRK06835 166 EKILE-KCKNFIENFDKNN-ENLLFYGNTGTGKTFLSNCI 203 (329)
T ss_pred HHHHH-HHHHHHHHHhccC-CcEEEECCCCCcHHHHHHHH
Confidence 34554 3455777665544 66999999999999988543
No 64
>PRK08727 hypothetical protein; Validated
Probab=76.25 E-value=1 Score=47.59 Aligned_cols=19 Identities=26% Similarity=0.365 Sum_probs=16.5
Q ss_pred ceEeeccCCCCCCccccCC
Q 003480 288 ATCFAYGQTGSGKTFTMQP 306 (816)
Q Consensus 288 atIfAYGqTGSGKTyTM~G 306 (816)
-.|+-||++|+||||.+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALA 60 (233)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4599999999999999854
No 65
>PRK08939 primosomal protein DnaI; Reviewed
Probab=76.05 E-value=1.2 Score=49.45 Aligned_cols=52 Identities=10% Similarity=0.184 Sum_probs=32.4
Q ss_pred EeeeeeCCCCChHHHhhhhhhchHHHhhcC-CcceEeeccCCCCCCccccCCCc
Q 003480 256 CFDAVLDERVTNDEVYRVTVEPIIPTIFQR-TKATCFAYGQTGSGKTFTMQPLP 308 (816)
Q Consensus 256 ~FD~VFd~~asQeeVy~~~v~pLV~~vl~G-~NatIfAYGqTGSGKTyTM~Gl~ 308 (816)
+||.+-.....+..++.. +...++....| ..-.++-||++|+||||.+.++.
T Consensus 125 tf~~~~~~~~~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia 177 (306)
T PRK08939 125 SLADIDLDDRDRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIA 177 (306)
T ss_pred cHHHhcCCChHHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHH
Confidence 444432222355666663 45566655443 23469999999999999995443
No 66
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=74.32 E-value=1.3 Score=50.89 Aligned_cols=51 Identities=24% Similarity=0.352 Sum_probs=32.1
Q ss_pred eeEEEeeeeeCCCCChHHHhhhhhhchHHHhhcCCcceEeeccCCCCCCccccC
Q 003480 252 KHEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 252 ~~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM~ 305 (816)
...|+||.-... .++.-.|.. + ..|...-.+.---||-||.+|+||||-|.
T Consensus 81 ~~~ytFdnFv~g-~~N~~A~aa-~-~~va~~~g~~~nplfi~G~~GlGKTHLl~ 131 (408)
T COG0593 81 NPKYTFDNFVVG-PSNRLAYAA-A-KAVAENPGGAYNPLFIYGGVGLGKTHLLQ 131 (408)
T ss_pred CCCCchhheeeC-CchHHHHHH-H-HHHHhccCCcCCcEEEECCCCCCHHHHHH
Confidence 356899875544 456656652 2 22222222234468999999999999994
No 67
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=74.14 E-value=1.3 Score=40.24 Aligned_cols=16 Identities=38% Similarity=0.476 Sum_probs=14.2
Q ss_pred EeeccCCCCCCccccC
Q 003480 290 CFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 290 IfAYGqTGSGKTyTM~ 305 (816)
++.+|.||+|||+++.
T Consensus 3 ~~i~~~~G~GKT~~~~ 18 (144)
T cd00046 3 VLLAAPTGSGKTLAAL 18 (144)
T ss_pred EEEECCCCCchhHHHH
Confidence 5788999999999994
No 68
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=73.03 E-value=3.2 Score=50.68 Aligned_cols=83 Identities=20% Similarity=0.317 Sum_probs=53.9
Q ss_pred EEeeeeeCCCCChHHHhhhhhhchHHHhhcCCcceEeeccCCCCCCccccCCCc-------------hhHHHHHHHHhcc
Q 003480 255 FCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPLP-------------LRAAEDLVRLLHQ 321 (816)
Q Consensus 255 F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM~Gl~-------------~ra~~dLf~~l~~ 321 (816)
|....-|.|.-.|..-++. +++.+-+|....+ .+|.||||||+||-.++ ...+..|+..+..
T Consensus 2 f~~~~~~~~~~~Q~~ai~~----l~~~~~~~~~~~~-l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~ 76 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK----LVEGLTDGEKHQT-LLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKE 76 (655)
T ss_pred ceeccCCCCChHHHHHHHH----HHHhhhcCCCcEE-EECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHH
Confidence 4445557787888877764 5555556643333 78999999999994321 2344556666554
Q ss_pred ccccCceeEEEEEeEEeeCCee
Q 003480 322 PVYRNQRFKLWLSYFEIYGGKL 343 (816)
Q Consensus 322 ~~~~~~~f~V~vSf~EIYnEkV 343 (816)
.. .+..+..+||||.-|.-..
T Consensus 77 f~-p~~~V~~f~sy~d~y~pe~ 97 (655)
T TIGR00631 77 FF-PENAVEYFVSYYDYYQPEA 97 (655)
T ss_pred hC-CCCeEEEEeeecccCCccc
Confidence 22 2334778999999998653
No 69
>PF13245 AAA_19: Part of AAA domain
Probab=71.86 E-value=2 Score=37.86 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=17.6
Q ss_pred HHHhhcCCcceEeeccCCCCCCcccc
Q 003480 279 IPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 279 V~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
|...+. .+..++.-|+.|||||+|+
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~ 27 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTL 27 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHH
Confidence 344445 3444555899999999998
No 70
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=70.76 E-value=11 Score=40.45 Aligned_cols=53 Identities=25% Similarity=0.361 Sum_probs=33.7
Q ss_pred EeccHHHHHHHHHHHHhccCcccCCCCCCCCCceEEEEEEEEeeeccccccccCCCCCCCCceEEEEEEEEeCCCCCC
Q 003480 372 EVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNESRGKVIGKISFIDLAGSER 449 (816)
Q Consensus 372 ~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~~~~~~~~~~~~~~~g~~~~~~~~skL~fVDLAGSER 449 (816)
.+.+++++...|..+... ..+. + ..-|.-++.|.|.... .-.|+||||+|-.+
T Consensus 85 ~~~~~~~v~~~i~~~~~~-~~~~---~--~~~s~~~i~l~i~~p~-------------------~~~ltLIDlPGl~~ 137 (240)
T smart00053 85 KFTDFDEVRNEIEAETDR-VTGT---N--KGISPVPINLRVYSPH-------------------VLNLTLIDLPGITK 137 (240)
T ss_pred ccCCHHHHHHHHHHHHHH-hcCC---C--CcccCcceEEEEeCCC-------------------CCceEEEeCCCccc
Confidence 446788888888876542 1111 1 2335567778775432 23599999999965
No 71
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=70.62 E-value=1.6 Score=45.34 Aligned_cols=17 Identities=41% Similarity=0.634 Sum_probs=14.0
Q ss_pred eEeeccCCCCCCccccC
Q 003480 289 TCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 289 tIfAYGqTGSGKTyTM~ 305 (816)
-+.-+|.||||||+|+.
T Consensus 25 H~~I~G~TGsGKS~~~~ 41 (229)
T PF01935_consen 25 HIAIFGTTGSGKSNTVK 41 (229)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 34567999999999993
No 72
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=70.04 E-value=2.7 Score=49.02 Aligned_cols=52 Identities=25% Similarity=0.292 Sum_probs=34.1
Q ss_pred eeEEEeeeeeCCCCChHHHhhhhhhchHHHh--hcC--CcceEeeccCCCCCCccccCC
Q 003480 252 KHEFCFDAVLDERVTNDEVYRVTVEPIIPTI--FQR--TKATCFAYGQTGSGKTFTMQP 306 (816)
Q Consensus 252 ~~~F~FD~VFd~~asQeeVy~~~v~pLV~~v--l~G--~NatIfAYGqTGSGKTyTM~G 306 (816)
...|+||.-.-. .++...|. .+..+.+.. ..| +| .+|-||++|+||||.+..
T Consensus 105 ~~~~tFdnFv~g-~~N~~a~~-~a~~~a~~~~~~~~~~~n-pl~L~G~~G~GKTHLl~A 160 (445)
T PRK12422 105 DPLMTFANFLVT-PENDLPHR-ILQEFTKVSEQGKGFPFN-PIYLFGPEGSGKTHLMQA 160 (445)
T ss_pred CccccccceeeC-CcHHHHHH-HHHHHHhccccccCCCCc-eEEEEcCCCCCHHHHHHH
Confidence 357899987653 46666665 344444332 223 34 478899999999999853
No 73
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=69.85 E-value=1.5 Score=44.57 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=16.4
Q ss_pred cceEeeccCCCCCCccccCCC
Q 003480 287 KATCFAYGQTGSGKTFTMQPL 307 (816)
Q Consensus 287 NatIfAYGqTGSGKTyTM~Gl 307 (816)
.-.++-+|++|+||||...++
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai 67 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAI 67 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHH
Confidence 445899999999999998543
No 74
>PRK09183 transposase/IS protein; Provisional
Probab=69.74 E-value=2.5 Score=45.65 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=15.7
Q ss_pred eEeeccCCCCCCccccCCC
Q 003480 289 TCFAYGQTGSGKTFTMQPL 307 (816)
Q Consensus 289 tIfAYGqTGSGKTyTM~Gl 307 (816)
.|+-+|++|+||||.+..+
T Consensus 104 ~v~l~Gp~GtGKThLa~al 122 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIAL 122 (259)
T ss_pred eEEEEeCCCCCHHHHHHHH
Confidence 3667999999999998544
No 75
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=69.60 E-value=2.1 Score=51.34 Aligned_cols=28 Identities=25% Similarity=0.476 Sum_probs=23.4
Q ss_pred hHHHhhcCCcceEeeccCCCCCCccccC
Q 003480 278 IIPTIFQRTKATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 278 LV~~vl~G~NatIfAYGqTGSGKTyTM~ 305 (816)
.+..++..-++.|+..|+||||||.||.
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~ 334 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLY 334 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 3556667778899999999999999984
No 76
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=69.45 E-value=5.4 Score=43.28 Aligned_cols=115 Identities=20% Similarity=0.267 Sum_probs=64.3
Q ss_pred EEEEEeCCCCchhhccCCCcE-EEEeCCe-EEEeCCCcccccc--cccceeEEEeeeeeCCCCChHHHhhhhhhchHHHh
Q 003480 207 RVVVRKRPLNKKELSRKEEDI-VTVSDNA-LTVHEPKLKVDLT--AYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPTI 282 (816)
Q Consensus 207 rV~VRvRPl~~~E~~~~~~~i-v~v~~~~-v~v~~p~~~~~~~--~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV~~v 282 (816)
.-+||+--...+|+-.....+ +.-..+. |-+..|.....+. ...++..-++..|=+-+..-++|-+.+--||...-
T Consensus 100 ny~vrilstidrellkps~svalhrhsnalvdvlppeadssi~ml~~~ekpdvsy~diggld~qkqeireavelplt~~~ 179 (408)
T KOG0727|consen 100 NYYVRILSTIDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYADIGGLDVQKQEIREAVELPLTHAD 179 (408)
T ss_pred ceEEeehhhhhHHHcCCccchhhhhcccceeeccCCcccccccccCCCCCCCccccccccchhhHHHHHHHHhccchHHH
Confidence 567888777777764433221 1111122 3333333221111 11122233444555555566677766666776543
Q ss_pred hc---CCc--ceEeeccCCCCCCcccc-----------------------CCCchhHHHHHHHHhcc
Q 003480 283 FQ---RTK--ATCFAYGQTGSGKTFTM-----------------------QPLPLRAAEDLVRLLHQ 321 (816)
Q Consensus 283 l~---G~N--atIfAYGqTGSGKTyTM-----------------------~Gl~~ra~~dLf~~l~~ 321 (816)
+- |.+ -.|+.||+.|+|||-.. .|-.||.++++|++..+
T Consensus 180 ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlake 246 (408)
T KOG0727|consen 180 LYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE 246 (408)
T ss_pred HHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhc
Confidence 31 333 45899999999998543 15679999999998776
No 77
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=69.15 E-value=2.2 Score=45.96 Aligned_cols=42 Identities=12% Similarity=0.165 Sum_probs=28.8
Q ss_pred CCChHHHhhhhhhchHHHhhcCCcceEeeccCCCCCCccccCCCc
Q 003480 264 RVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPLP 308 (816)
Q Consensus 264 ~asQeeVy~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM~Gl~ 308 (816)
...+..+|. .+..+++.+- ....++-||++|+||||-+.++.
T Consensus 85 ~~~~~~~l~-~~~~~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~ 126 (254)
T COG1484 85 PGIDKKALE-DLASLVEFFE--RGENLVLLGPPGVGKTHLAIAIG 126 (254)
T ss_pred cchhHHHHH-HHHHHHHHhc--cCCcEEEECCCCCcHHHHHHHHH
Confidence 345677776 3566666555 33446789999999999985443
No 78
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=69.13 E-value=2.4 Score=49.97 Aligned_cols=28 Identities=32% Similarity=0.465 Sum_probs=22.7
Q ss_pred hHHHhhcCCcceEeeccCCCCCCccccC
Q 003480 278 IIPTIFQRTKATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 278 LV~~vl~G~NatIfAYGqTGSGKTyTM~ 305 (816)
.+..++..-++.|+-.|+||||||.||.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 3445666677889999999999999994
No 79
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=68.93 E-value=2 Score=38.89 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=15.5
Q ss_pred ceEeeccCCCCCCccccC
Q 003480 288 ATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 288 atIfAYGqTGSGKTyTM~ 305 (816)
..++-+|++|||||+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 3 EVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 467889999999999983
No 80
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=68.92 E-value=1.5 Score=40.81 Aligned_cols=27 Identities=33% Similarity=0.361 Sum_probs=17.5
Q ss_pred cceEeeccCCCCCCccccCCCchhHHHHHHH
Q 003480 287 KATCFAYGQTGSGKTFTMQPLPLRAAEDLVR 317 (816)
Q Consensus 287 NatIfAYGqTGSGKTyTM~Gl~~ra~~dLf~ 317 (816)
..+++.+|.+|+|||.++ .+.++++..
T Consensus 4 ~~~~~i~G~~G~GKT~~~----~~~~~~~~~ 30 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI----KRLARQLNA 30 (131)
T ss_dssp ---EEEEE-TTSSHHHHH----HHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHH----HHHHHHhHH
Confidence 457899999999999988 444444443
No 81
>PRK10436 hypothetical protein; Provisional
Probab=68.81 E-value=2.4 Score=49.72 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=22.3
Q ss_pred HHHhhcCCcceEeeccCCCCCCccccC
Q 003480 279 IPTIFQRTKATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 279 V~~vl~G~NatIfAYGqTGSGKTyTM~ 305 (816)
+..++..-++.|+..|+||||||.||.
T Consensus 210 l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 210 FRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 345556678899999999999999994
No 82
>PRK06921 hypothetical protein; Provisional
Probab=67.51 E-value=2.7 Score=45.53 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=24.3
Q ss_pred HHhhhhhhchHHHhhc---CCcceEeeccCCCCCCccccCC
Q 003480 269 EVYRVTVEPIIPTIFQ---RTKATCFAYGQTGSGKTFTMQP 306 (816)
Q Consensus 269 eVy~~~v~pLV~~vl~---G~NatIfAYGqTGSGKTyTM~G 306 (816)
.++. .+...++.+-. +..-.++-||++|+||||.+..
T Consensus 97 ~~~~-~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 97 DAYE-CAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred HHHH-HHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence 3444 34455554432 2345689999999999999843
No 83
>PF12846 AAA_10: AAA-like domain
Probab=67.46 E-value=2.1 Score=45.34 Aligned_cols=19 Identities=37% Similarity=0.597 Sum_probs=16.3
Q ss_pred cceEeeccCCCCCCccccC
Q 003480 287 KATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 287 NatIfAYGqTGSGKTyTM~ 305 (816)
|..++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4567889999999999984
No 84
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=66.50 E-value=2.8 Score=47.04 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=20.3
Q ss_pred HHHhhcCCcceEeeccCCCCCCccccC
Q 003480 279 IPTIFQRTKATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 279 V~~vl~G~NatIfAYGqTGSGKTyTM~ 305 (816)
+..++.--.+.|+-.|+||||||.||.
T Consensus 114 l~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 114 LRELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred HHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 334444345778999999999999994
No 85
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=66.41 E-value=2.7 Score=40.77 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=18.5
Q ss_pred HHHhhcCCcceEeeccCCCCCCcccc
Q 003480 279 IPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 279 V~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
++.+.+|.+ ++..|+||+|||...
T Consensus 8 ~~~i~~~~~--~li~aptGsGKT~~~ 31 (169)
T PF00270_consen 8 IEAIISGKN--VLISAPTGSGKTLAY 31 (169)
T ss_dssp HHHHHTTSE--EEEECSTTSSHHHHH
T ss_pred HHHHHcCCC--EEEECCCCCccHHHH
Confidence 344556666 788999999999887
No 86
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=65.90 E-value=3.2 Score=44.73 Aligned_cols=127 Identities=19% Similarity=0.212 Sum_probs=67.0
Q ss_pred EeeeeeCCCCChHHHhhhhhhchHHHhhcCCcce-EeeccCCCCCCccccCCCchhHHHHHHHHhccccccCceeEEEEE
Q 003480 256 CFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKAT-CFAYGQTGSGKTFTMQPLPLRAAEDLVRLLHQPVYRNQRFKLWLS 334 (816)
Q Consensus 256 ~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~Nat-IfAYGqTGSGKTyTM~Gl~~ra~~dLf~~l~~~~~~~~~f~V~vS 334 (816)
.+|...+-+...+.+.+. ...++.|..+- ++-||..|||||.++.. ++..... . .+.
T Consensus 25 ~l~~L~Gie~Qk~~l~~N-----t~~Fl~G~pannvLL~G~rGtGKSSlVka--------ll~~y~~---~------GLR 82 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIEN-----TEQFLQGLPANNVLLWGARGTGKSSLVKA--------LLNEYAD---Q------GLR 82 (249)
T ss_pred CHHHhcCHHHHHHHHHHH-----HHHHHcCCCCcceEEecCCCCCHHHHHHH--------HHHHHhh---c------Cce
Confidence 344444444444444443 35677776543 67799999999988743 2222221 1 266
Q ss_pred eEEeeCCeeeccccccccccccccC-CCcEEEeccEE-EEeccHHHHHHHHHHHHhccCcccCCCCCCCCCceEE
Q 003480 335 YFEIYGGKLFDLLGERKKLCMREDG-RQQVCIVGLQE-FEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAI 407 (816)
Q Consensus 335 f~EIYnEkV~DLL~~~~~L~ired~-~~~v~V~gLte-v~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaI 407 (816)
.+||..+.+.||-.=-..+ +.-+ +--+++..|+- ..=.+...+..+|+-|...| ....-..++|.|-|.|
T Consensus 83 lIev~k~~L~~l~~l~~~l--~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~-P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 83 LIEVSKEDLGDLPELLDLL--RDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEAR-PDNVLIYATSNRRHLV 154 (249)
T ss_pred EEEECHHHhccHHHHHHHH--hcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccC-CCcEEEEEecchhhcc
Confidence 7888888776664211101 1111 11123334431 11123566777777666554 3344455677777765
No 87
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=65.87 E-value=2.8 Score=43.21 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=19.6
Q ss_pred HHHhhcCCcceEeeccCCCCCCcccc
Q 003480 279 IPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 279 V~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
|..++...+-.++..|..||||||+|
T Consensus 10 ~~~~l~~~~~~~~l~G~aGtGKT~~l 35 (196)
T PF13604_consen 10 VRAILTSGDRVSVLQGPAGTGKTTLL 35 (196)
T ss_dssp HHHHHHCTCSEEEEEESTTSTHHHHH
T ss_pred HHHHHhcCCeEEEEEECCCCCHHHHH
Confidence 44555555556667899999999998
No 88
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=65.76 E-value=2.3 Score=45.48 Aligned_cols=18 Identities=39% Similarity=0.578 Sum_probs=15.7
Q ss_pred cceEeeccCCCCCCcccc
Q 003480 287 KATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 287 NatIfAYGqTGSGKTyTM 304 (816)
.+.|+-.|.||||||.+|
T Consensus 127 ~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLL 144 (270)
T ss_dssp TEEEEEEESTTSSHHHHH
T ss_pred ceEEEEECCCccccchHH
Confidence 566777899999999999
No 89
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=65.65 E-value=2.5 Score=43.49 Aligned_cols=18 Identities=39% Similarity=0.580 Sum_probs=15.8
Q ss_pred ceEeeccCCCCCCccccC
Q 003480 288 ATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 288 atIfAYGqTGSGKTyTM~ 305 (816)
+.|+-.|+||||||.++.
T Consensus 2 GlilI~GptGSGKTTll~ 19 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 568889999999999983
No 90
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=65.44 E-value=2.5 Score=42.82 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=21.0
Q ss_pred hchHHHhhcCCcceEeeccCCCCCCcccc
Q 003480 276 EPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 276 ~pLV~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
+.|.+.+-.|.+.+++-||+.|+|||+.|
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 34444444566889999999999999987
No 91
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=65.13 E-value=3.6 Score=47.33 Aligned_cols=52 Identities=15% Similarity=0.359 Sum_probs=34.7
Q ss_pred eEEEeeeeeCCCCChHHHhhhhhhchHH-Hhhc--C--CcceEeeccCCCCCCcccc
Q 003480 253 HEFCFDAVLDERVTNDEVYRVTVEPIIP-TIFQ--R--TKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 253 ~~F~FD~VFd~~asQeeVy~~~v~pLV~-~vl~--G--~NatIfAYGqTGSGKTyTM 304 (816)
..++|+.|-+.+..-+++-+.+..|+.. .++. | ..-.|+-||++|+|||+..
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 4567777777655555565555455553 3443 2 2456888999999999987
No 92
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=64.47 E-value=5.2 Score=44.49 Aligned_cols=35 Identities=31% Similarity=0.401 Sum_probs=23.1
Q ss_pred HHHhhcCCcceEeeccCCCCCCccccCCCchhHHHHHHH
Q 003480 279 IPTIFQRTKATCFAYGQTGSGKTFTMQPLPLRAAEDLVR 317 (816)
Q Consensus 279 V~~vl~G~NatIfAYGqTGSGKTyTM~Gl~~ra~~dLf~ 317 (816)
...+..+.---.+-||+.|+|||.|. .-+++.||.
T Consensus 49 ~~a~~~~~lp~~LFyGPpGTGKTSta----lafar~L~~ 83 (346)
T KOG0989|consen 49 KNALLRRILPHYLFYGPPGTGKTSTA----LAFARALNC 83 (346)
T ss_pred HHHHhhcCCceEEeeCCCCCcHhHHH----HHHHHHhcC
Confidence 33443434455788999999999998 344455554
No 93
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=64.40 E-value=3.3 Score=47.23 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=16.9
Q ss_pred CcceEeeccCCCCCCccccC
Q 003480 286 TKATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 286 ~NatIfAYGqTGSGKTyTM~ 305 (816)
.++.|+..|+||||||.||.
T Consensus 148 ~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 45568889999999999993
No 94
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=64.05 E-value=5.7 Score=44.70 Aligned_cols=51 Identities=18% Similarity=0.340 Sum_probs=28.5
Q ss_pred EEEeeeeeCCCCChHHHhhhhhhchHH-Hhhc--C--CcceEeeccCCCCCCcccc
Q 003480 254 EFCFDAVLDERVTNDEVYRVTVEPIIP-TIFQ--R--TKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 254 ~F~FD~VFd~~asQeeVy~~~v~pLV~-~vl~--G--~NatIfAYGqTGSGKTyTM 304 (816)
.+.||.+.+-+..-+++.+.+..|+.. ..+. | ....|+-||++|+|||+++
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 455555555443334444433333332 1222 1 1345889999999999887
No 95
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=64.01 E-value=3.4 Score=46.84 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=18.2
Q ss_pred CCcceEeeccCCCCCCccccC
Q 003480 285 RTKATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 285 G~NatIfAYGqTGSGKTyTM~ 305 (816)
-....|+-.|+||||||.||.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~ 152 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLA 152 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHH
Confidence 356889999999999999993
No 96
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=63.72 E-value=4.4 Score=44.34 Aligned_cols=30 Identities=27% Similarity=0.435 Sum_probs=24.9
Q ss_pred hhchHHHhhcCCcceEeeccCCCCCCcccc
Q 003480 275 VEPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 275 v~pLV~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
+.++++.+.--..+.|+-.|.|||||+.||
T Consensus 115 LPevlk~la~~kRGLviiVGaTGSGKSTtm 144 (375)
T COG5008 115 LPEVLKDLALAKRGLVIIVGATGSGKSTTM 144 (375)
T ss_pred CcHHHHHhhcccCceEEEECCCCCCchhhH
Confidence 455666666677888999999999999999
No 97
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=63.48 E-value=3.7 Score=44.47 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=21.0
Q ss_pred HHHhhcCCcceEeeccCCCCCCccccC
Q 003480 279 IPTIFQRTKATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 279 V~~vl~G~NatIfAYGqTGSGKTyTM~ 305 (816)
+..++..-.+.|+-.|.||||||.||.
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 345555556678889999999999993
No 98
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=62.94 E-value=22 Score=43.81 Aligned_cols=35 Identities=17% Similarity=0.371 Sum_probs=25.3
Q ss_pred HHhhhhhhchHHHhh-cCCcceEeeccCCCCCCcccc
Q 003480 269 EVYRVTVEPIIPTIF-QRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 269 eVy~~~v~pLV~~vl-~G~NatIfAYGqTGSGKTyTM 304 (816)
.||.. +......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 Hifai-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 68 HIYAL-ADNAYRSMKSENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred CHHHH-HHHHHHHHHHcCCCceEEEEcCCCCCcchHH
Confidence 35652 233333333 589999999999999999998
No 99
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=62.84 E-value=4.7 Score=42.64 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=17.5
Q ss_pred hcCCcceEeeccCCCCCCcccc
Q 003480 283 FQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 283 l~G~NatIfAYGqTGSGKTyTM 304 (816)
+......++-+|++|+|||+++
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHH
Confidence 4444557888999999999887
No 100
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=61.72 E-value=3.7 Score=45.85 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=19.5
Q ss_pred chHHHhhcCCcceEeeccCCCCCCccccC
Q 003480 277 PIIPTIFQRTKATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 277 pLV~~vl~G~NatIfAYGqTGSGKTyTM~ 305 (816)
.++..++.+. ..|+-.|.||||||++|.
T Consensus 139 ~~L~~~v~~~-~~ilI~G~tGSGKTTll~ 166 (319)
T PRK13894 139 EAIIAAVRAH-RNILVIGGTGSGKTTLVN 166 (319)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 3455555543 456666999999998874
No 101
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=61.12 E-value=4.2 Score=46.41 Aligned_cols=38 Identities=32% Similarity=0.655 Sum_probs=27.8
Q ss_pred eEeeccCCCCCCccccCCCchhHHHHHHHHhccccccCceeEEEEEeEEeeCC
Q 003480 289 TCFAYGQTGSGKTFTMQPLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGG 341 (816)
Q Consensus 289 tIfAYGqTGSGKTyTM~Gl~~ra~~dLf~~l~~~~~~~~~f~V~vSf~EIYnE 341 (816)
-|+-||.+||||||++ +.+|+..+. -.||+.++|-|.=
T Consensus 32 ~~~iyG~sgTGKT~~~--------r~~l~~~n~-------~~vw~n~~ecft~ 69 (438)
T KOG2543|consen 32 IVHIYGHSGTGKTYLV--------RQLLRKLNL-------ENVWLNCVECFTY 69 (438)
T ss_pred eEEEeccCCCchhHHH--------HHHHhhcCC-------cceeeehHHhccH
Confidence 3688999999999987 445555432 2378888888763
No 102
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=60.92 E-value=4.9 Score=37.20 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=20.1
Q ss_pred EeeccCCCCCCccccCCCchhHHHHHHHHh
Q 003480 290 CFAYGQTGSGKTFTMQPLPLRAAEDLVRLL 319 (816)
Q Consensus 290 IfAYGqTGSGKTyTM~Gl~~ra~~dLf~~l 319 (816)
|+-||++|.|||+.+ ...+.++.+.+
T Consensus 1 I~i~G~~G~GKS~l~----~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA----KELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHH----HHHHHHHHHHh
Confidence 578999999999998 45566666655
No 103
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=60.05 E-value=29 Score=42.79 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=26.4
Q ss_pred HHHhhhhhhchHHHhh-cCCcceEeeccCCCCCCcccc
Q 003480 268 DEVYRVTVEPIIPTIF-QRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 268 eeVy~~~v~pLV~~vl-~G~NatIfAYGqTGSGKTyTM 304 (816)
-.||. ++......++ .|.|-||+.-|.+|||||.+.
T Consensus 67 PHifa-vA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 67 PHVFA-IADRAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred CCHHH-HHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 34665 3333344444 589999999999999999998
No 104
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=59.83 E-value=6.2 Score=49.63 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=17.2
Q ss_pred CCcceEeeccCCCCCCcccc
Q 003480 285 RTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 285 G~NatIfAYGqTGSGKTyTM 304 (816)
|-+.++|-||++|+|||.|+
T Consensus 779 gpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 779 GSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 44567889999999999998
No 105
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=59.83 E-value=9.4 Score=46.82 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=25.5
Q ss_pred HHhhhhhhchHHHh-hcCCcceEeeccCCCCCCcccc
Q 003480 269 EVYRVTVEPIIPTI-FQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 269 eVy~~~v~pLV~~v-l~G~NatIfAYGqTGSGKTyTM 304 (816)
-||.. +......+ -.+.|-||+-.|.+|||||.|+
T Consensus 67 Hif~~-a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 67 HIFAV-AQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SHHHH-HHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred ccchh-hhcccccccccccccceeeccccccccccch
Confidence 36653 33333333 3589999999999999999998
No 106
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=59.76 E-value=9.9 Score=43.61 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=38.2
Q ss_pred eeEEEeeeeeCCCCChHHHhhhhhhchHHHhhc----CCcceEeeccCCCCCCcccc
Q 003480 252 KHEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQ----RTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 252 ~~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~----G~NatIfAYGqTGSGKTyTM 304 (816)
...+.||.+.+.-.--..+.+..+..++...+. ..---|.-||+.|+|||+..
T Consensus 109 ~~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllA 165 (413)
T PLN00020 109 QRTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQC 165 (413)
T ss_pred hhhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHH
Confidence 456788888776666666777777777777663 23345777999999999875
No 107
>PF13479 AAA_24: AAA domain
Probab=59.40 E-value=4 Score=42.49 Aligned_cols=19 Identities=37% Similarity=0.524 Sum_probs=16.3
Q ss_pred cceEeeccCCCCCCccccC
Q 003480 287 KATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 287 NatIfAYGqTGSGKTyTM~ 305 (816)
+..++.||++|+|||++..
T Consensus 3 ~~~~lIyG~~G~GKTt~a~ 21 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAA 21 (213)
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4578999999999998874
No 108
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=59.05 E-value=27 Score=42.99 Aligned_cols=36 Identities=17% Similarity=0.364 Sum_probs=25.7
Q ss_pred HHHhhhhhhchHHHh-hcCCcceEeeccCCCCCCcccc
Q 003480 268 DEVYRVTVEPIIPTI-FQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 268 eeVy~~~v~pLV~~v-l~G~NatIfAYGqTGSGKTyTM 304 (816)
-.||..+ ......+ -.|.|-||+.-|.+|||||.|.
T Consensus 73 PHifavA-~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 73 PHVFAIA-DNAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CCHHHHH-HHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 3456532 2223333 3689999999999999999998
No 109
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=58.55 E-value=3.5 Score=40.55 Aligned_cols=28 Identities=21% Similarity=0.339 Sum_probs=15.7
Q ss_pred chHHHhhcCCcceEeeccCCCCCCcccc
Q 003480 277 PIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 277 pLV~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
.+++....+...+++-+|.+|+|||+.+
T Consensus 14 ~~l~~~~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 14 DLLDAAQSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp HTTGGTSS-----EEE-B-TTSSHHHHH
T ss_pred HHHHHHHcCCCcEEEEECCCCCCHHHHH
Confidence 3344334566788999999999999987
No 110
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=58.17 E-value=35 Score=42.36 Aligned_cols=34 Identities=18% Similarity=0.352 Sum_probs=24.9
Q ss_pred HhhhhhhchHHHhh-cCCcceEeeccCCCCCCcccc
Q 003480 270 VYRVTVEPIIPTIF-QRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 270 Vy~~~v~pLV~~vl-~G~NatIfAYGqTGSGKTyTM 304 (816)
||.. +......++ .|.|-||+.-|.+|||||.|.
T Consensus 74 ifai-A~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 74 VFAI-ADKAYRDMKVLKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred HHHH-HHHHHHHHHhcCCCCeEEEecCCCCChhHHH
Confidence 5552 333333333 689999999999999999998
No 111
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=58.14 E-value=4.6 Score=44.56 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=20.3
Q ss_pred chHHHhhcCCcceEeeccCCCCCCccccC
Q 003480 277 PIIPTIFQRTKATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 277 pLV~~vl~G~NatIfAYGqTGSGKTyTM~ 305 (816)
.++..++.+ ...|+-.|.||||||.+|.
T Consensus 123 ~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 123 DVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 344445553 4567889999999999983
No 112
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=57.90 E-value=3.7 Score=37.94 Aligned_cols=15 Identities=33% Similarity=0.450 Sum_probs=13.4
Q ss_pred EeeccCCCCCCcccc
Q 003480 290 CFAYGQTGSGKTFTM 304 (816)
Q Consensus 290 IfAYGqTGSGKTyTM 304 (816)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 577999999999887
No 113
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=57.29 E-value=31 Score=42.47 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=19.9
Q ss_pred cCCcceEeeccCCCCCCcccc
Q 003480 284 QRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 284 ~G~NatIfAYGqTGSGKTyTM 304 (816)
.|.|.||+.-|.+|||||.|.
T Consensus 85 ~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 85 EGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred cCCCceEEEECCCCCCchhHH
Confidence 589999999999999999998
No 114
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=57.09 E-value=6.1 Score=43.21 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=16.7
Q ss_pred CCcceEeeccCCCCCCccccC
Q 003480 285 RTKATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 285 G~NatIfAYGqTGSGKTyTM~ 305 (816)
|....++-||++|+|||+++.
T Consensus 34 ~~~~~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 34 PNLPHLLVQGPPGSGKTAAVR 54 (337)
T ss_pred CCCceEEEECCCCCCHHHHHH
Confidence 443458889999999999983
No 115
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=56.86 E-value=3.9 Score=37.77 Aligned_cols=16 Identities=31% Similarity=0.409 Sum_probs=14.2
Q ss_pred eEeeccCCCCCCcccc
Q 003480 289 TCFAYGQTGSGKTFTM 304 (816)
Q Consensus 289 tIfAYGqTGSGKTyTM 304 (816)
+|+-.|.+|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4788999999999887
No 116
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=55.76 E-value=40 Score=41.75 Aligned_cols=36 Identities=17% Similarity=0.441 Sum_probs=25.9
Q ss_pred HHHhhhhhhchHHHhh-cCCcceEeeccCCCCCCcccc
Q 003480 268 DEVYRVTVEPIIPTIF-QRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 268 eeVy~~~v~pLV~~vl-~G~NatIfAYGqTGSGKTyTM 304 (816)
-.||.. +......++ .+.|-||+.-|.+|||||.+.
T Consensus 72 PHiyai-A~~Ay~~m~~~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 72 PHIFAI-ADNAYRSMLQDRENQSILITGESGAGKTENT 108 (693)
T ss_pred CCHHHH-HHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 346652 333333333 589999999999999999988
No 117
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=55.73 E-value=5 Score=40.62 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=12.8
Q ss_pred eEeeccCCCCCCccccC
Q 003480 289 TCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 289 tIfAYGqTGSGKTyTM~ 305 (816)
..+..|+.|||||+|+.
T Consensus 19 ~~~i~GpPGTGKT~~l~ 35 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLA 35 (236)
T ss_dssp -EEEE-STTSSHHHHHH
T ss_pred CEEEECCCCCChHHHHH
Confidence 45668999999999984
No 118
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=55.35 E-value=4.2 Score=42.10 Aligned_cols=17 Identities=41% Similarity=0.466 Sum_probs=14.7
Q ss_pred eEeeccCCCCCCccccC
Q 003480 289 TCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 289 tIfAYGqTGSGKTyTM~ 305 (816)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 46778999999999983
No 119
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=54.90 E-value=6.7 Score=44.35 Aligned_cols=36 Identities=25% Similarity=0.496 Sum_probs=27.1
Q ss_pred CChHHHhhhhhhchHHHhhcCCcceEeeccCCCCCCcccc
Q 003480 265 VTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 265 asQeeVy~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
..|..+|+.++..+. ......+|.-|..|+||||.+
T Consensus 4 ~eQ~~~~~~v~~~~~----~~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIE----NEEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred HHHHHHHHHHHHHHH----ccCCcEEEEEcCCCCChhHHH
Confidence 468889987654433 344567788999999999988
No 120
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=54.69 E-value=8.8 Score=44.79 Aligned_cols=16 Identities=38% Similarity=0.696 Sum_probs=14.2
Q ss_pred eEeeccCCCCCCcccc
Q 003480 289 TCFAYGQTGSGKTFTM 304 (816)
Q Consensus 289 tIfAYGqTGSGKTyTM 304 (816)
.|+-||++|+|||+++
T Consensus 219 gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 219 GVILYGPPGTGKTLLA 234 (438)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999887
No 121
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=53.95 E-value=8.5 Score=43.98 Aligned_cols=51 Identities=20% Similarity=0.350 Sum_probs=28.9
Q ss_pred EEEeeeeeCCCCChHHHhhhhhhchHH-HhhcC----CcceEeeccCCCCCCcccc
Q 003480 254 EFCFDAVLDERVTNDEVYRVTVEPIIP-TIFQR----TKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 254 ~F~FD~VFd~~asQeeVy~~~v~pLV~-~vl~G----~NatIfAYGqTGSGKTyTM 304 (816)
.+.||.|-+-+..-+++.+....|+.. ..+.. ....|+-||++|+|||+..
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHH
Confidence 345555554433334444443344443 22321 2346889999999999877
No 122
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=53.03 E-value=8.4 Score=37.60 Aligned_cols=28 Identities=36% Similarity=0.456 Sum_probs=20.4
Q ss_pred cceEee-ccCCCCCCccccCCCchhHHHHHHHH
Q 003480 287 KATCFA-YGQTGSGKTFTMQPLPLRAAEDLVRL 318 (816)
Q Consensus 287 NatIfA-YGqTGSGKTyTM~Gl~~ra~~dLf~~ 318 (816)
...|++ .|.||+||||+- ...++.||..
T Consensus 52 KpLVlSfHG~tGtGKn~v~----~liA~~ly~~ 80 (127)
T PF06309_consen 52 KPLVLSFHGWTGTGKNFVS----RLIAEHLYKS 80 (127)
T ss_pred CCEEEEeecCCCCcHHHHH----HHHHHHHHhc
Confidence 345555 499999999987 5566777764
No 123
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=53.01 E-value=42 Score=41.53 Aligned_cols=21 Identities=24% Similarity=0.514 Sum_probs=20.1
Q ss_pred cCCcceEeeccCCCCCCcccc
Q 003480 284 QRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 284 ~G~NatIfAYGqTGSGKTyTM 304 (816)
.|.|-||+.-|.+|||||.+.
T Consensus 83 ~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 83 DEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred cCCCceEEEEcCCCCCchHHH
Confidence 689999999999999999998
No 124
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=52.94 E-value=6.8 Score=42.54 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=26.3
Q ss_pred CCCCChHHHhhhhhhchHHHhhc--CCcceEeeccCCCCCCccccC
Q 003480 262 DERVTNDEVYRVTVEPIIPTIFQ--RTKATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 262 d~~asQeeVy~~~v~pLV~~vl~--G~NatIfAYGqTGSGKTyTM~ 305 (816)
++-..|+++.+. +..++..... +....++-||++|+|||+.+.
T Consensus 4 ~~~iG~~~~~~~-l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 4 AEFIGQEKVKEQ-LQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred HHHcCHHHHHHH-HHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 344566776664 3444443322 222347779999999998873
No 125
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=52.18 E-value=8.1 Score=37.39 Aligned_cols=18 Identities=33% Similarity=0.394 Sum_probs=14.6
Q ss_pred ceEeeccCCCCCCccccC
Q 003480 288 ATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 288 atIfAYGqTGSGKTyTM~ 305 (816)
..++..|.+|||||.++.
T Consensus 25 ~~~~i~~~~GsGKT~~~~ 42 (201)
T smart00487 25 RDVILAAPTGSGKTLAAL 42 (201)
T ss_pred CcEEEECCCCCchhHHHH
Confidence 456777899999999873
No 126
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=51.60 E-value=15 Score=45.90 Aligned_cols=25 Identities=40% Similarity=0.444 Sum_probs=21.1
Q ss_pred HHHhhcCCcceEeeccCCCCCCccccC
Q 003480 279 IPTIFQRTKATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 279 V~~vl~G~NatIfAYGqTGSGKTyTM~ 305 (816)
+..+.+|.|+.|+| +||||||-+.+
T Consensus 31 ~~~i~~G~nvLiiA--PTGsGKTeAAf 55 (814)
T COG1201 31 IPEIHSGENVLIIA--PTGSGKTEAAF 55 (814)
T ss_pred HHHHhCCCceEEEc--CCCCChHHHHH
Confidence 45678999999988 99999998863
No 127
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=50.67 E-value=7.8 Score=39.34 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=19.7
Q ss_pred hchHHHhhcCCcceEeeccCCCCCCcccc
Q 003480 276 EPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 276 ~pLV~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
.+++..++.. ...+.-.|+||||||.+|
T Consensus 15 ~~~l~~~v~~-g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 15 AAYLWLAVEA-RKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHHHHHHhC-CCEEEEECCCCCCHHHHH
Confidence 3445555543 345677899999999988
No 128
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=50.59 E-value=7.4 Score=43.60 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=19.4
Q ss_pred chHHHhhcCCcceEeeccCCCCCCccccC
Q 003480 277 PIIPTIFQRTKATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 277 pLV~~vl~G~NatIfAYGqTGSGKTyTM~ 305 (816)
.++..++.+. ..|+-.|.||||||.+|.
T Consensus 135 ~~L~~~v~~~-~nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 135 SVIRSAIDSR-LNIVISGGTGSGKTTLAN 162 (323)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 3344444432 357888999999999993
No 129
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=50.17 E-value=7.9 Score=45.93 Aligned_cols=45 Identities=18% Similarity=0.284 Sum_probs=31.1
Q ss_pred EEEeeeeeCCCCChHHHhhhhhhchHHHhhcCCcceEeeccCCCCCCcccc
Q 003480 254 EFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 254 ~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
.+.||.+++.+..-.++.+. +..+ ...+..|+-+|.+||||++..
T Consensus 192 ~~~~~~liG~s~~~~~~~~~-----~~~~-a~~~~pvli~Ge~GtGK~~lA 236 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQ-----ARVV-ARSNSTVLLRGESGTGKELIA 236 (534)
T ss_pred cCccCceEECCHHHHHHHHH-----HHHH-hCcCCCEEEECCCCccHHHHH
Confidence 47888888875444444432 2222 357888999999999998765
No 130
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=50.09 E-value=8.7 Score=42.05 Aligned_cols=18 Identities=33% Similarity=0.634 Sum_probs=15.5
Q ss_pred cceEeeccCCCCCCcccc
Q 003480 287 KATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 287 NatIfAYGqTGSGKTyTM 304 (816)
--.|+-||++|+|||++.
T Consensus 151 PknVLFyGppGTGKTm~A 168 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMA 168 (368)
T ss_pred cceeEEECCCCccHHHHH
Confidence 356889999999999886
No 131
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=50.07 E-value=8.2 Score=42.13 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=16.7
Q ss_pred cCC-cceEeeccCCCCCCccccC
Q 003480 284 QRT-KATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 284 ~G~-NatIfAYGqTGSGKTyTM~ 305 (816)
.|. ...++-||++|+|||+.+.
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHH
Confidence 443 3466669999999999874
No 132
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=49.29 E-value=6.8 Score=41.80 Aligned_cols=19 Identities=37% Similarity=0.489 Sum_probs=15.1
Q ss_pred CcceEeeccCCCCCCcccc
Q 003480 286 TKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 286 ~NatIfAYGqTGSGKTyTM 304 (816)
.+..++..|..|||||+||
T Consensus 12 ~~~~~lV~a~AGSGKT~~l 30 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTL 30 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHH
T ss_pred CCCCEEEEeCCCCCchHHH
Confidence 6677788889999999999
No 133
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=49.22 E-value=5.7 Score=40.61 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=13.3
Q ss_pred eEeeccCCCCCCccccC
Q 003480 289 TCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 289 tIfAYGqTGSGKTyTM~ 305 (816)
-++.+|.||||||.++.
T Consensus 40 h~li~G~tgsGKS~~l~ 56 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLR 56 (205)
T ss_dssp SEEEE--TTSSHHHHHH
T ss_pred eEEEEcCCCCCccHHHH
Confidence 67899999999999984
No 134
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=48.90 E-value=9.2 Score=40.17 Aligned_cols=19 Identities=32% Similarity=0.559 Sum_probs=13.9
Q ss_pred CcceEeeccCCCCCCcccc
Q 003480 286 TKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 286 ~NatIfAYGqTGSGKTyTM 304 (816)
.+-.+++.|+.|||||+..
T Consensus 18 ~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp H-SEEEEE--TTSSTTHHH
T ss_pred hCCeEEEECCCCCcHHHHH
Confidence 5558999999999999876
No 135
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=48.58 E-value=6.4 Score=42.97 Aligned_cols=20 Identities=40% Similarity=0.463 Sum_probs=15.4
Q ss_pred eEeeccCCCCCCccccCCCc
Q 003480 289 TCFAYGQTGSGKTFTMQPLP 308 (816)
Q Consensus 289 tIfAYGqTGSGKTyTM~Gl~ 308 (816)
.|.-.|+||+|||+|+..+.
T Consensus 196 vi~~vGptGvGKTTt~~kLa 215 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLA 215 (282)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 45566999999999995443
No 136
>PHA00729 NTP-binding motif containing protein
Probab=47.90 E-value=10 Score=40.41 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=23.6
Q ss_pred hchHHHhhcCCcceEeeccCCCCCCccccCCCc
Q 003480 276 EPIIPTIFQRTKATCFAYGQTGSGKTFTMQPLP 308 (816)
Q Consensus 276 ~pLV~~vl~G~NatIfAYGqTGSGKTyTM~Gl~ 308 (816)
+.+++.+..|.-..|+.+|.+|+||||....+.
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa 38 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVA 38 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHH
Confidence 445555555444579999999999999885433
No 137
>PRK13342 recombination factor protein RarA; Reviewed
Probab=47.48 E-value=9.1 Score=43.96 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=24.6
Q ss_pred CChHHHhhhhhhchHHHhhcCCcceEeeccCCCCCCccccC
Q 003480 265 VTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 265 asQeeVy~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM~ 305 (816)
..|+.+... ...+...+-.+.-..++-||++|+|||+++.
T Consensus 15 vGq~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 15 VGQEHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred cCcHHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHH
Confidence 345555442 2233333344555567779999999998873
No 138
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=46.42 E-value=9.5 Score=42.82 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=19.8
Q ss_pred hchHHHhhcCCcceEeeccCCCCCCcccc
Q 003480 276 EPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 276 ~pLV~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
..++..++.+. ..|+..|.||||||.+|
T Consensus 150 ~~~L~~~v~~~-~nili~G~tgSGKTTll 177 (332)
T PRK13900 150 KEFLEHAVISK-KNIIISGGTSTGKTTFT 177 (332)
T ss_pred HHHHHHHHHcC-CcEEEECCCCCCHHHHH
Confidence 34455444433 45778899999999998
No 139
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=46.10 E-value=8.2 Score=43.60 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=19.6
Q ss_pred chHHHhhcCCcceEeeccCCCCCCccccC
Q 003480 277 PIIPTIFQRTKATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 277 pLV~~vl~G~NatIfAYGqTGSGKTyTM~ 305 (816)
.++..++. ....|+-.|.||||||.+|.
T Consensus 153 ~~l~~~v~-~~~nilI~G~tGSGKTTll~ 180 (344)
T PRK13851 153 AFLHACVV-GRLTMLLCGPTGSGKTTMSK 180 (344)
T ss_pred HHHHHHHH-cCCeEEEECCCCccHHHHHH
Confidence 34444443 34457888999999999984
No 140
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=46.04 E-value=7.6 Score=36.80 Aligned_cols=15 Identities=33% Similarity=0.459 Sum_probs=13.6
Q ss_pred EeeccCCCCCCcccc
Q 003480 290 CFAYGQTGSGKTFTM 304 (816)
Q Consensus 290 IfAYGqTGSGKTyTM 304 (816)
|+..|.+|||||+..
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999876
No 141
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=45.52 E-value=7.1 Score=37.15 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=13.6
Q ss_pred EeeccCCCCCCcccc
Q 003480 290 CFAYGQTGSGKTFTM 304 (816)
Q Consensus 290 IfAYGqTGSGKTyTM 304 (816)
|+-+|++|+|||..+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999877
No 142
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=45.49 E-value=9.1 Score=49.67 Aligned_cols=29 Identities=28% Similarity=0.298 Sum_probs=19.2
Q ss_pred hHHHhhcCCcceEeeccCCCCCCccccCCC
Q 003480 278 IIPTIFQRTKATCFAYGQTGSGKTFTMQPL 307 (816)
Q Consensus 278 LV~~vl~G~NatIfAYGqTGSGKTyTM~Gl 307 (816)
+++.+-+|...+++ .-+||||||+||..+
T Consensus 425 i~~a~~~g~r~~Ll-~maTGSGKT~tai~l 453 (1123)
T PRK11448 425 VEKAIVEGQREILL-AMATGTGKTRTAIAL 453 (1123)
T ss_pred HHHHHHhccCCeEE-EeCCCCCHHHHHHHH
Confidence 34444456554444 489999999998543
No 143
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=44.95 E-value=8.4 Score=39.04 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=15.0
Q ss_pred ceEeeccCCCCCCcccc
Q 003480 288 ATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 288 atIfAYGqTGSGKTyTM 304 (816)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 56888999999999976
No 144
>PTZ00424 helicase 45; Provisional
Probab=44.93 E-value=10 Score=42.76 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=18.1
Q ss_pred HHHhhcCCcceEeeccCCCCCCcccc
Q 003480 279 IPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 279 V~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
+..+++|.|. +..++||||||.+.
T Consensus 59 i~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 59 IKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHhCCCCE--EEECCCCChHHHHH
Confidence 4456788875 46789999999764
No 145
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=44.93 E-value=2.3e+02 Score=27.04 Aligned_cols=66 Identities=12% Similarity=0.141 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 003480 746 EIEDTMEIVREEMKLLAEVEQPGSLIDNYVTQLSFVLSRKAASLVSLQARLARFQHRLKEQEILSRK 812 (816)
Q Consensus 746 ~ie~~~elv~eEm~LL~~vd~pg~diD~Yv~~L~~iL~~K~~~i~~Lq~~l~~F~~~L~eEE~ls~~ 812 (816)
.+..+-.|+=+...+| ++.+|..-|..=+..|..=|.||-++|..+.+++...+..|.+-+.-.+.
T Consensus 16 ~aRq~e~~FlqKr~~L-S~~kpe~~lkEEi~eLK~ElqRKe~Ll~Kh~~kI~~w~~lL~d~~~~~k~ 81 (106)
T PF11594_consen 16 VARQMEAFFLQKRFEL-SAYKPEQVLKEEINELKEELQRKEQLLQKHYEKIDYWEKLLSDAQNQHKV 81 (106)
T ss_pred HHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3345566776766677 99999999999999999999999999999999999999998876655443
No 146
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=44.83 E-value=11 Score=43.71 Aligned_cols=24 Identities=38% Similarity=0.606 Sum_probs=18.3
Q ss_pred HHHhhcCCcceEeeccCCCCCCcccc
Q 003480 279 IPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 279 V~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
+..+++|.| ++..++||||||.+.
T Consensus 35 i~~~l~g~d--vi~~a~TGsGKT~a~ 58 (460)
T PRK11776 35 LPAILAGKD--VIAQAKTGSGKTAAF 58 (460)
T ss_pred HHHHhcCCC--EEEECCCCCcHHHHH
Confidence 345667887 677889999999663
No 147
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=44.08 E-value=25 Score=38.62 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=26.1
Q ss_pred ceEeeccCCCCCCccccC-----------------------CCchhHHHHHHHHhcc
Q 003480 288 ATCFAYGQTGSGKTFTMQ-----------------------PLPLRAAEDLVRLLHQ 321 (816)
Q Consensus 288 atIfAYGqTGSGKTyTM~-----------------------Gl~~ra~~dLf~~l~~ 321 (816)
-.|+.||+.|+|||.... |-..|.+++||.....
T Consensus 212 kgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~mart 268 (435)
T KOG0729|consen 212 KGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMART 268 (435)
T ss_pred CceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcc
Confidence 358999999999997752 3446888889987654
No 148
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=43.96 E-value=19 Score=38.55 Aligned_cols=43 Identities=26% Similarity=0.342 Sum_probs=28.7
Q ss_pred eCCCCChHHHhhhhhhchHHHhhcC--CcceEeeccCCCCCCcccc
Q 003480 261 LDERVTNDEVYRVTVEPIIPTIFQR--TKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 261 Fd~~asQeeVy~~~v~pLV~~vl~G--~NatIfAYGqTGSGKTyTM 304 (816)
|++-..|++|-.. .+.+++.+... .-..++-||+.|.|||...
T Consensus 23 L~efiGQ~~l~~~-l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 23 LDEFIGQEHLKGN-LKILIRAAKKRGEALDHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp CCCS-S-HHHHHH-HHHHHHHHHCTTS---EEEEESSTTSSHHHHH
T ss_pred HHHccCcHHHHhh-hHHHHHHHHhcCCCcceEEEECCCccchhHHH
Confidence 4555778988874 67777776543 2346899999999998654
No 149
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=43.11 E-value=8.2 Score=35.48 Aligned_cols=16 Identities=38% Similarity=0.312 Sum_probs=13.7
Q ss_pred EeeccCCCCCCccccC
Q 003480 290 CFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 290 IfAYGqTGSGKTyTM~ 305 (816)
|+-.|.+|||||+...
T Consensus 1 I~i~G~~GsGKtTia~ 16 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAK 16 (129)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred CEEECCCCCCHHHHHH
Confidence 5678999999999874
No 150
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=42.96 E-value=13 Score=37.48 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=17.2
Q ss_pred HHhhcCCcceEeeccCCCCCCcccc
Q 003480 280 PTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 280 ~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
+.++.|.| ++..++||+|||.+.
T Consensus 31 ~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 31 PPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHhcCCc--EEEECCCCCcHHHHH
Confidence 34455776 577889999999874
No 151
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=42.94 E-value=13 Score=40.37 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=17.9
Q ss_pred CCcceEeeccCCCCCCcccc
Q 003480 285 RTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 285 G~NatIfAYGqTGSGKTyTM 304 (816)
.-+.+|.-||.-|||||+.|
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFL 37 (325)
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 56788999999999999988
No 152
>PRK06547 hypothetical protein; Provisional
Probab=42.90 E-value=14 Score=37.49 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=18.3
Q ss_pred hHHHhhcCCcceEeeccCCCCCCcccc
Q 003480 278 IIPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 278 LV~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
++..+..+.---|.-+|.+|||||+..
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 344444444445666699999999876
No 153
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=42.89 E-value=9.5 Score=43.82 Aligned_cols=19 Identities=42% Similarity=0.525 Sum_probs=16.6
Q ss_pred cceEeeccCCCCCCccccC
Q 003480 287 KATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 287 NatIfAYGqTGSGKTyTM~ 305 (816)
...|+.+|+||+|||.|+.
T Consensus 174 ~~vi~lvGptGvGKTTT~a 192 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIA 192 (388)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578889999999999993
No 154
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=42.57 E-value=11 Score=38.73 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=14.6
Q ss_pred CcceEeeccCCCCCCcccc
Q 003480 286 TKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 286 ~NatIfAYGqTGSGKTyTM 304 (816)
....+|..|+.|||||+.+
T Consensus 14 ~P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp S-EEEEEES-TTSTTHHHH
T ss_pred CCEEEEEeCCCCCCHHHHH
Confidence 4467889999999999887
No 155
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=42.40 E-value=11 Score=42.05 Aligned_cols=53 Identities=25% Similarity=0.305 Sum_probs=36.6
Q ss_pred eeEEEeeeeeCCCCChHHHhhhhhhchHHHh-hc--CCc--ceEeeccCCCCCCcccc
Q 003480 252 KHEFCFDAVLDERVTNDEVYRVTVEPIIPTI-FQ--RTK--ATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 252 ~~~F~FD~VFd~~asQeeVy~~~v~pLV~~v-l~--G~N--atIfAYGqTGSGKTyTM 304 (816)
...++||+|-+-...-.++-+.+.-||++.. |. |.. --|.-||+.|+|||+-.
T Consensus 126 ~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla 183 (388)
T KOG0651|consen 126 PRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLA 183 (388)
T ss_pred ccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHH
Confidence 3568899888765444556666677888643 33 332 34788999999999864
No 156
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.59 E-value=18 Score=46.70 Aligned_cols=17 Identities=35% Similarity=0.579 Sum_probs=13.8
Q ss_pred ceEeeccCCCCCCcccc
Q 003480 288 ATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 288 atIfAYGqTGSGKTyTM 304 (816)
..+.-+|+||||||..+
T Consensus 27 gl~~I~G~nGaGKSTil 43 (1042)
T TIGR00618 27 PIFLICGKTGAGKTTLL 43 (1042)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45567899999999776
No 157
>PRK13764 ATPase; Provisional
Probab=41.53 E-value=12 Score=45.38 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=16.9
Q ss_pred cceEeeccCCCCCCccccCC
Q 003480 287 KATCFAYGQTGSGKTFTMQP 306 (816)
Q Consensus 287 NatIfAYGqTGSGKTyTM~G 306 (816)
...|+..|+||||||+++..
T Consensus 257 ~~~ILIsG~TGSGKTTll~A 276 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQA 276 (602)
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 44589999999999999954
No 158
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=41.13 E-value=12 Score=42.22 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=18.4
Q ss_pred HHhhcCCcceEeeccCCCCCCcccc
Q 003480 280 PTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 280 ~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
..+..+. +.|+-.|-||||||.++
T Consensus 167 ~~av~~r-~NILisGGTGSGKTTlL 190 (355)
T COG4962 167 RRAVGIR-CNILISGGTGSGKTTLL 190 (355)
T ss_pred HHHHhhc-eeEEEeCCCCCCHHHHH
Confidence 3333433 77899999999999987
No 159
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=40.87 E-value=79 Score=35.31 Aligned_cols=54 Identities=37% Similarity=0.487 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH-HHH-hhhcCCCchHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 003480 736 EEALIAAHRKEIEDTMEIVREEM-KLL-AEVEQPGSLIDNYVTQLSFVLS-------RKAASLVSLQARLAR 798 (816)
Q Consensus 736 EE~lI~~HR~~ie~~~elv~eEm-~LL-~~vd~pg~diD~Yv~~L~~iL~-------~K~~~i~~Lq~~l~~ 798 (816)
||+|+.|--+. |++-|+.+.-| +|| .+||| |++|..++. +-.+++..|+.+|..
T Consensus 175 dEelrqA~eKf-EESkE~aE~sM~nlle~d~eq--------vsqL~~Li~aqLdfhrqs~~iL~~l~~~l~~ 237 (366)
T KOG1118|consen 175 DEELRQALEKF-EESKELAEDSMFNLLENDVEQ--------VSQLSALIQAQLDFHRQSTQILQELQMKLFS 237 (366)
T ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56677766555 89999999888 666 44554 466666665 445666777766653
No 160
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=40.64 E-value=11 Score=40.39 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=15.4
Q ss_pred ceEeeccCCCCCCccccC
Q 003480 288 ATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 288 atIfAYGqTGSGKTyTM~ 305 (816)
..++-||++|+|||++..
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 457889999999999883
No 161
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=40.63 E-value=13 Score=45.08 Aligned_cols=42 Identities=17% Similarity=0.384 Sum_probs=28.4
Q ss_pred EEeeeeeCCCCChHHHhhhhhhchHHHhhcCCcceEeeccCCCCCCcccc
Q 003480 255 FCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 255 F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
-+||.+++. ...... ++..+..++...++-||++|+|||+.+
T Consensus 151 ~~~~~iiGq----s~~~~~----l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 151 RAFSEIVGQ----ERAIKA----LLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred CcHHhceeC----cHHHHH----HHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 356666653 333332 344555677778889999999999887
No 162
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=40.57 E-value=13 Score=42.52 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=18.9
Q ss_pred HHHhhcCCcceEeeccCCCCCCcccc
Q 003480 279 IPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 279 V~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
|..+++|.+ +++.++||||||.+.
T Consensus 32 i~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 32 IPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 445667876 788899999999763
No 163
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=39.24 E-value=14 Score=42.29 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=17.9
Q ss_pred HHHhhcCCcceEeeccCCCCCCcccc
Q 003480 279 IPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 279 V~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
+..++.|.| |++-++||||||.+.
T Consensus 39 ip~il~g~d--vi~~ApTGsGKTla~ 62 (423)
T PRK04837 39 LPLTLAGRD--VAGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHhCCCc--EEEECCCCchHHHHH
Confidence 445678887 455669999999753
No 164
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=39.15 E-value=15 Score=43.01 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=19.4
Q ss_pred ccCCCccEEEEEeeCCCCCCHHHHHHHHHHHH
Q 003480 502 SFVGNSKTVMISCISPNVGSCEHTLNTLRYAD 533 (816)
Q Consensus 502 sLgGnskT~mIa~VSPs~~~~eETLsTLrfA~ 533 (816)
.|.-..+..+|||++....+ +..|.+|-
T Consensus 319 ~f~iP~Nl~IIgTMNt~Drs----~~~lD~Al 346 (459)
T PRK11331 319 RFYVPENVYIIGLMNTADRS----LAVVDYAL 346 (459)
T ss_pred cccCCCCeEEEEecCccccc----hhhccHHH
Confidence 35557889999999887654 44555554
No 165
>PLN03025 replication factor C subunit; Provisional
Probab=38.77 E-value=18 Score=40.01 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=15.0
Q ss_pred ceEeeccCCCCCCccccC
Q 003480 288 ATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 288 atIfAYGqTGSGKTyTM~ 305 (816)
..++-||+.|+|||+++.
T Consensus 35 ~~lll~Gp~G~GKTtla~ 52 (319)
T PLN03025 35 PNLILSGPPGTGKTTSIL 52 (319)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 346679999999999984
No 166
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=38.58 E-value=18 Score=44.43 Aligned_cols=31 Identities=32% Similarity=0.428 Sum_probs=21.6
Q ss_pred hhhchHHHhhc-----CCcceEeeccCCCCCCccccC
Q 003480 274 TVEPIIPTIFQ-----RTKATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 274 ~v~pLV~~vl~-----G~NatIfAYGqTGSGKTyTM~ 305 (816)
++..+++.+.. |.+..|+.. .||||||+||.
T Consensus 246 av~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~ 281 (667)
T TIGR00348 246 AVKKIVESITRKTWGKDERGGLIWH-TQGSGKTLTML 281 (667)
T ss_pred HHHHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHH
Confidence 46666777665 344455444 89999999994
No 167
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=38.40 E-value=16 Score=40.59 Aligned_cols=40 Identities=20% Similarity=0.299 Sum_probs=23.8
Q ss_pred CChHHHhhhhhhchHHHhhc--CCcceEeeccCCCCCCccccC
Q 003480 265 VTNDEVYRVTVEPIIPTIFQ--RTKATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 265 asQeeVy~~~v~pLV~~vl~--G~NatIfAYGqTGSGKTyTM~ 305 (816)
..|+++-+. +..++..... +....++-||++|+|||+.+.
T Consensus 28 vG~~~~~~~-l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 28 IGQEKVKEN-LKIFIEAAKKRGEALDHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred cCcHHHHHH-HHHHHHHHHhcCCCCCcEEEECCCCccHHHHHH
Confidence 445555442 3333433322 222457789999999999884
No 168
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=38.26 E-value=16 Score=42.37 Aligned_cols=24 Identities=38% Similarity=0.600 Sum_probs=18.7
Q ss_pred HHHhhcCCcceEeeccCCCCCCcccc
Q 003480 279 IPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 279 V~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
|..+++|.| |++-.+||||||.+.
T Consensus 32 i~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 32 IPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHH
Confidence 445677887 677789999999763
No 169
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=38.24 E-value=18 Score=39.13 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=16.7
Q ss_pred cCCcceEeeccCCCCCCcccc
Q 003480 284 QRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 284 ~G~NatIfAYGqTGSGKTyTM 304 (816)
.|....++-||+.|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 344445788999999999888
No 170
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=38.20 E-value=14 Score=42.40 Aligned_cols=20 Identities=35% Similarity=0.345 Sum_probs=16.4
Q ss_pred cceEeeccCCCCCCccccCC
Q 003480 287 KATCFAYGQTGSGKTFTMQP 306 (816)
Q Consensus 287 NatIfAYGqTGSGKTyTM~G 306 (816)
...++-+|+||+|||+|+.-
T Consensus 137 g~ii~lvGptGvGKTTtiak 156 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAK 156 (374)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 35677899999999999943
No 171
>PF05729 NACHT: NACHT domain
Probab=38.16 E-value=14 Score=35.34 Aligned_cols=16 Identities=31% Similarity=0.567 Sum_probs=14.3
Q ss_pred eEeeccCCCCCCcccc
Q 003480 289 TCFAYGQTGSGKTFTM 304 (816)
Q Consensus 289 tIfAYGqTGSGKTyTM 304 (816)
.|+-+|..|+|||..|
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 4678999999999988
No 172
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=37.86 E-value=38 Score=37.43 Aligned_cols=33 Identities=30% Similarity=0.494 Sum_probs=26.3
Q ss_pred eEeeccCCCCCCccccC-----------CCchhHHHHHHHHhcc
Q 003480 289 TCFAYGQTGSGKTFTMQ-----------PLPLRAAEDLVRLLHQ 321 (816)
Q Consensus 289 tIfAYGqTGSGKTyTM~-----------Gl~~ra~~dLf~~l~~ 321 (816)
.|+.-|.+|||||..|. .+|+..+..+.+.+.+
T Consensus 3 ~vIiTGlSGaGKs~Al~~lED~Gy~cvDNlP~~Ll~~l~~~~~~ 46 (284)
T PF03668_consen 3 LVIITGLSGAGKSTALRALEDLGYYCVDNLPPSLLPQLIELLAQ 46 (284)
T ss_pred EEEEeCCCcCCHHHHHHHHHhcCeeEEcCCcHHHHHHHHHHHHh
Confidence 46778999999999983 3788888888877764
No 173
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=37.62 E-value=1.9e+02 Score=31.12 Aligned_cols=63 Identities=21% Similarity=0.283 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcCCCchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003480 734 EEEEALIAAHRKEIEDTMEIVREEMKLLAEVEQPGSLIDN---YVTQLSFVLSRKAASLVSLQARLARF 799 (816)
Q Consensus 734 eeEE~lI~~HR~~ie~~~elv~eEm~LL~~vd~pg~diD~---Yv~~L~~iL~~K~~~i~~Lq~~l~~F 799 (816)
+.|+.+|..-++ ++..|+.|-|.++++..+...||.. =+.++..=..+..+.|..+.+.+..+
T Consensus 28 e~ee~~L~e~~k---E~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~L 93 (230)
T PF10146_consen 28 ENEEKCLEEYRK---EMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPL 93 (230)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455544443 3455666666888877776667544 34444433344444444444443333
No 174
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=37.31 E-value=2.2e+02 Score=30.45 Aligned_cols=77 Identities=17% Similarity=0.280 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHhhhcCCCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003480 727 GNINALLEEEEALIAAHRKEIEDTMEIVREEM-KLLAEVEQPGS---LIDNYVTQLSFVLSRKAASLVSLQARLARFQHR 802 (816)
Q Consensus 727 e~i~~ileeEE~lI~~HR~~ie~~~elv~eEm-~LL~~vd~pg~---diD~Yv~~L~~iL~~K~~~i~~Lq~~l~~F~~~ 802 (816)
..++.+.+.....+..... .+..++=+.+|+ .|+.++++-.. .++.|..+++..+....+-|.+|+.++......
T Consensus 21 ~~~~~~~~~~~~~~~~~~~-sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~ 99 (251)
T PF11932_consen 21 ATLDQAQQVQQQWVQAAQQ-SQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEET 99 (251)
T ss_pred ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666677666666544 355555455544 55555544332 377889999998888888888888887776544
Q ss_pred HH
Q 003480 803 LK 804 (816)
Q Consensus 803 L~ 804 (816)
.+
T Consensus 100 ~~ 101 (251)
T PF11932_consen 100 RQ 101 (251)
T ss_pred HH
Confidence 33
No 175
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=37.30 E-value=14 Score=39.21 Aligned_cols=21 Identities=38% Similarity=0.638 Sum_probs=17.5
Q ss_pred cceEeeccCCCCCCccccCCC
Q 003480 287 KATCFAYGQTGSGKTFTMQPL 307 (816)
Q Consensus 287 NatIfAYGqTGSGKTyTM~Gl 307 (816)
...++-||..|+|||+++..+
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~ 32 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYL 32 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhc
Confidence 456999999999999987544
No 176
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=37.25 E-value=18 Score=43.26 Aligned_cols=30 Identities=27% Similarity=0.444 Sum_probs=22.6
Q ss_pred hhchHHHhhcCCc--ceEeeccCCCCCCcccc
Q 003480 275 VEPIIPTIFQRTK--ATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 275 v~pLV~~vl~G~N--atIfAYGqTGSGKTyTM 304 (816)
|+..++..+.|.. .-++-+|++|+|||.|+
T Consensus 31 V~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 31 VRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 5556666665543 46788999999999998
No 177
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=37.21 E-value=22 Score=40.33 Aligned_cols=27 Identities=33% Similarity=0.608 Sum_probs=20.8
Q ss_pred chHHHhhcCCc---ceEeeccCCCCCCcccc
Q 003480 277 PIIPTIFQRTK---ATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 277 pLV~~vl~G~N---atIfAYGqTGSGKTyTM 304 (816)
|.++..+.|.. -|||+ |+||||||.-|
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFl 290 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFL 290 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEe
Confidence 66777787753 56665 99999999888
No 178
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=37.20 E-value=15 Score=45.01 Aligned_cols=116 Identities=14% Similarity=0.233 Sum_probs=58.0
Q ss_pred EEEeeeeeCCCCChHHHhhhhhhchHHHhhcCCcceEeeccCCCCCCccccCCCchhHHHHHHHHhccccccCceeEEEE
Q 003480 254 EFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPLPLRAAEDLVRLLHQPVYRNQRFKLWL 333 (816)
Q Consensus 254 ~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM~Gl~~ra~~dLf~~l~~~~~~~~~f~V~v 333 (816)
.+.|+.+++....-..+.+. +.. +...+..|+-+|.+|||||+.. +.|...... .+. --+.+
T Consensus 372 n~~~~~liG~S~~~~~~~~~-----~~~-~a~~~~pVLI~GE~GTGK~~lA--------~~ih~~s~r---~~~-~~v~i 433 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQ-----VEM-VAQSDSTVLILGETGTGKELIA--------RAIHNLSGR---NNR-RMVKM 433 (686)
T ss_pred cccccceeecCHHHHHHHHH-----HHH-HhCCCCCEEEECCCCcCHHHHH--------HHHHHhcCC---CCC-CeEEE
Confidence 35677777654433333332 222 3456788999999999998854 222222111 111 12344
Q ss_pred EeEEeeCCeee-cccccc---------cccccccc-CCCcEEEeccEEEEeccHHHHHHHHHHHH
Q 003480 334 SYFEIYGGKLF-DLLGER---------KKLCMRED-GRQQVCIVGLQEFEVSDVQIVKEYIEKGN 387 (816)
Q Consensus 334 Sf~EIYnEkV~-DLL~~~---------~~L~ired-~~~~v~V~gLtev~V~S~eE~~~lL~~G~ 387 (816)
.|-.+..+.+. +|+... ..+...+. .++-+++.++......-...+..+|+.+.
T Consensus 434 ~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~ 498 (686)
T PRK15429 434 NCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQE 498 (686)
T ss_pred ecccCChhHhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCC
Confidence 44333221111 222211 01111122 23446777777777666677777776653
No 179
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=36.84 E-value=20 Score=39.15 Aligned_cols=32 Identities=25% Similarity=0.437 Sum_probs=24.3
Q ss_pred hhhhhchHHHhhcCCcceEeeccCCCCCCcccc
Q 003480 272 RVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 272 ~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
...+.||+ ..+.--+..+--||+|++|||.++
T Consensus 179 ~afa~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 179 AAFAAPLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHHHHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 33455666 455666778899999999999887
No 180
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=36.70 E-value=11 Score=42.84 Aligned_cols=44 Identities=23% Similarity=0.435 Sum_probs=29.2
Q ss_pred eEEEeeeeeCCCCChHHHhhhhhhchHHHhhcCCcceEeeccCCCCCCcccc
Q 003480 253 HEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 253 ~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
..|.|+.|-+. +++=.. |+..+.+-.-+.|+-+|.+|||||+++
T Consensus 12 ~~~pf~~ivGq----~~~k~a----l~~~~~~p~~~~vli~G~~GtGKs~~a 55 (350)
T CHL00081 12 PVFPFTAIVGQ----EEMKLA----LILNVIDPKIGGVMIMGDRGTGKSTTI 55 (350)
T ss_pred CCCCHHHHhCh----HHHHHH----HHHhccCCCCCeEEEEcCCCCCHHHHH
Confidence 36888877664 444333 333333333356889999999999988
No 181
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=36.35 E-value=22 Score=41.04 Aligned_cols=19 Identities=42% Similarity=0.468 Sum_probs=15.9
Q ss_pred cceEeeccCCCCCCccccC
Q 003480 287 KATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 287 NatIfAYGqTGSGKTyTM~ 305 (816)
...|.-.|+||-|||.|+-
T Consensus 203 ~~vi~LVGPTGVGKTTTlA 221 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLA 221 (407)
T ss_pred CcEEEEECCCCCcHHHHHH
Confidence 5566777999999999994
No 182
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=36.27 E-value=30 Score=39.34 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=20.9
Q ss_pred chHHHhhcCCcceEeeccCCCCCCcccc
Q 003480 277 PIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 277 pLV~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
.+|..+++|.+| +-...||||||...
T Consensus 36 ~cIpkILeGrdc--ig~AkTGsGKT~AF 61 (442)
T KOG0340|consen 36 ACIPKILEGRDC--IGCAKTGSGKTAAF 61 (442)
T ss_pred hhhHHHhccccc--ccccccCCCcchhh
Confidence 457788999986 56679999999776
No 183
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=36.19 E-value=41 Score=41.38 Aligned_cols=42 Identities=26% Similarity=0.365 Sum_probs=28.2
Q ss_pred hchHHHhh--cCCcceEeeccCCCCCCccccCCCchhHHHHHHHHhcc
Q 003480 276 EPIIPTIF--QRTKATCFAYGQTGSGKTFTMQPLPLRAAEDLVRLLHQ 321 (816)
Q Consensus 276 ~pLV~~vl--~G~NatIfAYGqTGSGKTyTM~Gl~~ra~~dLf~~l~~ 321 (816)
...+..++ +|..+|+.--|..|||||+|+ ...++.|.....+
T Consensus 409 ~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV----~~Vm~~Lq~~s~~ 452 (767)
T KOG1514|consen 409 EDFLRSFISDQGLGSCMYISGVPGTGKTATV----LEVMKELQTSSAQ 452 (767)
T ss_pred HHHHHhhcCCCCCceeEEEecCCCCCceehH----HHHHHHHHHHHhh
Confidence 33444444 366679999999999999998 4455555544443
No 184
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=35.71 E-value=19 Score=44.77 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=17.7
Q ss_pred cCCcceEeeccCCCCCCccccC
Q 003480 284 QRTKATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 284 ~G~NatIfAYGqTGSGKTyTM~ 305 (816)
.+.-..++-||++|+|||+++.
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLAR 70 (725)
T ss_pred cCCCceEEEECCCCCCHHHHHH
Confidence 3445578889999999999874
No 185
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=35.62 E-value=15 Score=34.88 Aligned_cols=16 Identities=44% Similarity=0.632 Sum_probs=13.6
Q ss_pred EeeccCCCCCCccccC
Q 003480 290 CFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 290 IfAYGqTGSGKTyTM~ 305 (816)
++-+|.+|+|||+.+.
T Consensus 2 ~~i~G~~G~GKT~l~~ 17 (165)
T cd01120 2 ILVFGPTGSGKTTLAL 17 (165)
T ss_pred eeEeCCCCCCHHHHHH
Confidence 4568999999999874
No 186
>PRK10536 hypothetical protein; Provisional
Probab=34.81 E-value=21 Score=38.93 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=26.7
Q ss_pred EEEeeeeeCCCCChHHHhhhhhhchHHHhhcCCcceEeeccCCCCCCcccc
Q 003480 254 EFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 254 ~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
.|.|-.|-+-+..|..... .+.+ +.-++..|.+||||||..
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~--------al~~--~~lV~i~G~aGTGKT~La 91 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLK--------AIES--KQLIFATGEAGCGKTWIS 91 (262)
T ss_pred hcCCccccCCCHHHHHHHH--------HHhc--CCeEEEECCCCCCHHHHH
Confidence 3555555565555554333 2223 348899999999999987
No 187
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=34.61 E-value=19 Score=39.64 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=23.4
Q ss_pred chHH-HhhcCCcceEeeccCCCCCCcccc
Q 003480 277 PIIP-TIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 277 pLV~-~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
.||. ++-+|+.-.|+|.|.||.|||..|
T Consensus 31 QLV~ksv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 31 QLVNKSVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHHHHHHhcCceEEEEEeccCCccHHHHH
Confidence 3444 566899999999999999999877
No 188
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=34.58 E-value=15 Score=41.04 Aligned_cols=15 Identities=47% Similarity=0.753 Sum_probs=13.2
Q ss_pred EeeccCCCCCCcccc
Q 003480 290 CFAYGQTGSGKTFTM 304 (816)
Q Consensus 290 IfAYGqTGSGKTyTM 304 (816)
...||+|||||++.+
T Consensus 90 ~~VYGPTG~GKSqLl 104 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLL 104 (369)
T ss_pred EEEECCCCCCHHHHH
Confidence 456999999999987
No 189
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=34.35 E-value=20 Score=36.59 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=19.3
Q ss_pred HHhhcCC---cceEeeccCCCCCCcccc
Q 003480 280 PTIFQRT---KATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 280 ~~vl~G~---NatIfAYGqTGSGKTyTM 304 (816)
+.++.|. ...+.-||.+|||||..+
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4455554 677889999999999766
No 190
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=33.89 E-value=22 Score=39.53 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=19.9
Q ss_pred hhcCCcceEeeccCCCCCCccccC
Q 003480 282 IFQRTKATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 282 vl~G~NatIfAYGqTGSGKTyTM~ 305 (816)
-....+..++-||..|||||.+|.
T Consensus 18 ~~~~~~~r~vL~G~~GsGKS~~L~ 41 (309)
T PF10236_consen 18 DKSSKNNRYVLTGERGSGKSVLLA 41 (309)
T ss_pred cccCCceEEEEECCCCCCHHHHHH
Confidence 345677889999999999999983
No 191
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=33.87 E-value=7.6 Score=39.22 Aligned_cols=94 Identities=14% Similarity=0.177 Sum_probs=50.7
Q ss_pred cCCcceEeeccCCCCCCccccCCCchhHHHHHHHHhccccccCceeEEEEEeEEeeCCeee-cccccc----------cc
Q 003480 284 QRTKATCFAYGQTGSGKTFTMQPLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLF-DLLGER----------KK 352 (816)
Q Consensus 284 ~G~NatIfAYGqTGSGKTyTM~Gl~~ra~~dLf~~l~~~~~~~~~f~V~vSf~EIYnEkV~-DLL~~~----------~~ 352 (816)
..++..|+-+|.+||||+... +.|.. ...+...--|.|.|-.+..+.+. .|+... +.
T Consensus 19 a~~~~pVlI~GE~GtGK~~lA--------~~IH~----~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~ 86 (168)
T PF00158_consen 19 ASSDLPVLITGETGTGKELLA--------RAIHN----NSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKK 86 (168)
T ss_dssp TTSTS-EEEECSTTSSHHHHH--------HHHHH----CSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBE
T ss_pred hCCCCCEEEEcCCCCcHHHHH--------HHHHH----hhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccC
Confidence 367899999999999997654 33333 22222222244444444333221 122211 11
Q ss_pred ccccccCCCcEEEeccEEEEeccHHHHHHHHHHHHhc
Q 003480 353 LCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAA 389 (816)
Q Consensus 353 L~ired~~~~v~V~gLtev~V~S~eE~~~lL~~G~~~ 389 (816)
-.+..-.++-+++.++.......-..++++|+.+.-.
T Consensus 87 G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~ 123 (168)
T PF00158_consen 87 GLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFT 123 (168)
T ss_dssp HHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEE
T ss_pred CceeeccceEEeecchhhhHHHHHHHHHHHHhhchhc
Confidence 1222334555778888888887778888888876433
No 192
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=33.30 E-value=53 Score=26.20 Aligned_cols=27 Identities=33% Similarity=0.545 Sum_probs=21.9
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCchhHHHHHHHHHhCc
Q 003480 13 AAAALYDHPGGSMHNNAGPTTDAGDAVMARWLQSAGL 49 (816)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (816)
--.|+..| |..|..-.|.|-||++.|=
T Consensus 5 ll~AI~~~----------P~ddt~RLvYADWL~e~gd 31 (42)
T TIGR02996 5 LLRAILAH----------PDDDTPRLVYADWLDEHGD 31 (42)
T ss_pred HHHHHHhC----------CCCcchHHHHHHHHHHcCC
Confidence 34667777 6689999999999999883
No 193
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=33.18 E-value=19 Score=42.60 Aligned_cols=114 Identities=11% Similarity=0.149 Sum_probs=57.8
Q ss_pred EeeeeeCCCCChHHHhhhhhhchHHHhhcCCcceEeeccCCCCCCccccCCCchhHHHHHHHHhccccccCceeEEEEEe
Q 003480 256 CFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPLPLRAAEDLVRLLHQPVYRNQRFKLWLSY 335 (816)
Q Consensus 256 ~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM~Gl~~ra~~dLf~~l~~~~~~~~~f~V~vSf 335 (816)
.|+.+.+....-..+++. |.. +...+..|+-+|.+||||++.. +.|..... +...--|.|.|
T Consensus 185 ~~~~iig~s~~~~~~~~~-----i~~-~a~~~~pVlI~Ge~GtGK~~~A--------~~ih~~s~----r~~~p~v~v~c 246 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKE-----IEV-VAASDLNVLILGETGVGKELVA--------RAIHAASP----RADKPLVYLNC 246 (509)
T ss_pred cCCceeecCHHHHHHHHH-----HHH-HhCCCCcEEEECCCCccHHHHH--------HHHHHhCC----cCCCCeEEEEc
Confidence 666676654433444432 233 3467889999999999998765 22222211 11112244444
Q ss_pred EEeeCCeee-ccccccc---------c-ccccccCCCcEEEeccEEEEeccHHHHHHHHHHHH
Q 003480 336 FEIYGGKLF-DLLGERK---------K-LCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGN 387 (816)
Q Consensus 336 ~EIYnEkV~-DLL~~~~---------~-L~ired~~~~v~V~gLtev~V~S~eE~~~lL~~G~ 387 (816)
-.+..+.+- .|+...+ . -.+.....+-+++.++.+....-...++++|+.+.
T Consensus 247 ~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~ 309 (509)
T PRK05022 247 AALPESLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGE 309 (509)
T ss_pred ccCChHHHHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCC
Confidence 444322111 1222111 0 11222334456777777777665666666666543
No 194
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=33.10 E-value=20 Score=39.02 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=19.1
Q ss_pred hHHHhhcCCcceEeeccCCCCCCcccc
Q 003480 278 IIPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 278 LV~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
+++..+.. +--|+-.|++|+|||-++
T Consensus 25 ll~~l~~~-~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 25 LLDLLLSN-GRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHHHHHHC-TEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHc-CCcEEEECCCCCchhHHH
Confidence 44444443 557799999999999877
No 195
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=33.00 E-value=25 Score=38.86 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=21.5
Q ss_pred hhchHHHhhcCCcceEeeccCCCCCCcccc
Q 003480 275 VEPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 275 v~pLV~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
+.+++..++.+. ..|+-.|.||||||..|
T Consensus 133 ~~~~l~~~v~~~-~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 133 IKEFLRLAIASR-KNIIISGGTGSGKTTFL 161 (308)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCHHHHH
Confidence 455666666544 46677799999999987
No 196
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=32.82 E-value=23 Score=40.84 Aligned_cols=39 Identities=18% Similarity=0.280 Sum_probs=28.9
Q ss_pred CChHHHhhhhhhchHHHhhcCCcceEeeccCCCCCCcccc
Q 003480 265 VTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 265 asQeeVy~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
..|+.+... ..+|-.-+-.|.-.+.+-||+.|+|||...
T Consensus 27 vGQ~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA 65 (436)
T COG2256 27 VGQEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTLA 65 (436)
T ss_pred cChHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHHH
Confidence 456777754 455555555678888999999999999764
No 197
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=32.72 E-value=27 Score=39.05 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=14.8
Q ss_pred ceEeeccCCCCCCccccC
Q 003480 288 ATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 288 atIfAYGqTGSGKTyTM~ 305 (816)
..|.-.|++|+|||.|+.
T Consensus 115 ~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIG 132 (318)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 456667999999999983
No 198
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=32.55 E-value=30 Score=38.75 Aligned_cols=50 Identities=20% Similarity=0.504 Sum_probs=33.3
Q ss_pred hhhhhch-HHHhhcCCc---ceEeeccCCCCCCccccC-----------------------CCchhHHHHHHHHhcc
Q 003480 272 RVTVEPI-IPTIFQRTK---ATCFAYGQTGSGKTFTMQ-----------------------PLPLRAAEDLVRLLHQ 321 (816)
Q Consensus 272 ~~~v~pL-V~~vl~G~N---atIfAYGqTGSGKTyTM~-----------------------Gl~~ra~~dLf~~l~~ 321 (816)
+.++-|+ ..++|.|.. ..|+-||+.|+||+|... |-..+.+..||.+..+
T Consensus 147 EAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe 223 (439)
T KOG0739|consen 147 EAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARE 223 (439)
T ss_pred hheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3334444 245666654 569999999999999762 3445667777776654
No 199
>PRK04195 replication factor C large subunit; Provisional
Probab=32.53 E-value=21 Score=41.99 Aligned_cols=30 Identities=27% Similarity=0.399 Sum_probs=21.9
Q ss_pred hhchHHHhhcCC-cceEeeccCCCCCCcccc
Q 003480 275 VEPIIPTIFQRT-KATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 275 v~pLV~~vl~G~-NatIfAYGqTGSGKTyTM 304 (816)
+...+.....|. .-.++-||++|+|||++.
T Consensus 26 l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 26 LREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 444455554554 567888999999999987
No 200
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=32.47 E-value=15 Score=42.30 Aligned_cols=19 Identities=37% Similarity=0.601 Sum_probs=15.6
Q ss_pred cceEeeccCCCCCCccccC
Q 003480 287 KATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 287 NatIfAYGqTGSGKTyTM~ 305 (816)
+--++.+|.||||||..|.
T Consensus 42 ~~h~~i~g~tGsGKt~~i~ 60 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQIR 60 (410)
T ss_pred hccEEEEcCCCCCHHHHHH
Confidence 4467899999999998763
No 201
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.43 E-value=24 Score=41.19 Aligned_cols=25 Identities=28% Similarity=0.607 Sum_probs=18.4
Q ss_pred hHHHhhcCCcceEeeccCCCCCCcccc
Q 003480 278 IIPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 278 LV~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
.|..++.|.+ +++..+||||||.+.
T Consensus 19 ai~~~l~g~d--vlv~apTGsGKTl~y 43 (470)
T TIGR00614 19 VINAVLLGRD--CFVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHhHHH
Confidence 3456678886 456679999999764
No 202
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=32.21 E-value=2.8e+02 Score=25.73 Aligned_cols=36 Identities=14% Similarity=0.302 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003480 770 LIDNYVTQLSFVLSRKAASLVSLQARLARFQHRLKE 805 (816)
Q Consensus 770 diD~Yv~~L~~iL~~K~~~i~~Lq~~l~~F~~~L~e 805 (816)
.++..+..++.-+.+--.-+..++.+|..++.+|++
T Consensus 67 ~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 67 ELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777788888888888888765
No 203
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=32.12 E-value=32 Score=42.47 Aligned_cols=35 Identities=23% Similarity=0.448 Sum_probs=25.8
Q ss_pred HHhhhhhhchHHHhh-cCCcceEeeccCCCCCCcccc
Q 003480 269 EVYRVTVEPIIPTIF-QRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 269 eVy~~~v~pLV~~vl-~G~NatIfAYGqTGSGKTyTM 304 (816)
.||.. +......++ .+.|-||+.-|.+|||||.|.
T Consensus 74 Hifai-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 74 HVYAI-ADTAYNEMMRDEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred CHHHH-HHHHHHHHHHcCCCceEEEecCCCCCcchHH
Confidence 46653 333334444 589999999999999999987
No 204
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=31.99 E-value=20 Score=40.32 Aligned_cols=19 Identities=42% Similarity=0.620 Sum_probs=15.8
Q ss_pred CcceEeeccCCCCCCcccc
Q 003480 286 TKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 286 ~NatIfAYGqTGSGKTyTM 304 (816)
..+-|+..|+||||||+..
T Consensus 96 ~KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLA 114 (408)
T ss_pred eeccEEEECCCCCcHHHHH
Confidence 4567899999999999754
No 205
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=31.84 E-value=19 Score=43.99 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=14.9
Q ss_pred eEeeccCCCCCCccccC
Q 003480 289 TCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 289 tIfAYGqTGSGKTyTM~ 305 (816)
.++-.|++|||||||+.
T Consensus 175 ~~lI~GpPGTGKT~t~~ 191 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTLV 191 (637)
T ss_pred eEEEEcCCCCCHHHHHH
Confidence 46689999999999984
No 206
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=31.47 E-value=14 Score=40.58 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=18.6
Q ss_pred cCCcceEeeccCCCCCCcccc
Q 003480 284 QRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 284 ~G~NatIfAYGqTGSGKTyTM 304 (816)
.|++-+|+..|++|+|||.-+
T Consensus 1 kg~~fnImVvG~sG~GKTTFI 21 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTFI 21 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHH
Confidence 478899999999999999765
No 207
>PF13173 AAA_14: AAA domain
Probab=31.43 E-value=20 Score=34.00 Aligned_cols=16 Identities=31% Similarity=0.410 Sum_probs=14.5
Q ss_pred eEeeccCCCCCCcccc
Q 003480 289 TCFAYGQTGSGKTFTM 304 (816)
Q Consensus 289 tIfAYGqTGSGKTyTM 304 (816)
.++-+|+.|+|||+.|
T Consensus 4 ~~~l~G~R~vGKTtll 19 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLL 19 (128)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5788999999999998
No 208
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=31.43 E-value=14 Score=37.49 Aligned_cols=64 Identities=20% Similarity=0.321 Sum_probs=28.7
Q ss_pred HHHhhcCCcceEeeccCCCCCCccccCCCchhHHHHHHHHhccccccCceeEEEEEeEEe-eCCeeec
Q 003480 279 IPTIFQRTKATCFAYGQTGSGKTFTMQPLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEI-YGGKLFD 345 (816)
Q Consensus 279 V~~vl~G~NatIfAYGqTGSGKTyTM~Gl~~ra~~dLf~~l~~~~~~~~~f~V~vSf~EI-YnEkV~D 345 (816)
+...+.| -+++-.|++|.|||..+-.+.+...... ..+.....++.+.+.....+++ .+.-|.|
T Consensus 29 l~~~l~~--k~~vl~G~SGvGKSSLiN~L~~~~~~~t-~~is~~~~rGkHTTt~~~l~~l~~g~~iID 93 (161)
T PF03193_consen 29 LKELLKG--KTSVLLGQSGVGKSSLINALLPEAKQKT-GEISEKTGRGKHTTTHRELFPLPDGGYIID 93 (161)
T ss_dssp HHHHHTT--SEEEEECSTTSSHHHHHHHHHTSS-----S--------------SEEEEEETTSEEEEC
T ss_pred HHHHhcC--CEEEEECCCCCCHHHHHHHHHhhcchhh-hhhhcccCCCcccCCCeeEEecCCCcEEEE
Confidence 3455566 4666779999999988743333221111 1122223345555566666776 4444555
No 209
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=31.39 E-value=22 Score=43.34 Aligned_cols=25 Identities=36% Similarity=0.587 Sum_probs=19.1
Q ss_pred hHHHhhcCCcceEeeccCCCCCCcccc
Q 003480 278 IIPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 278 LV~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
.|..++.|.+ |+..++||||||.+.
T Consensus 36 ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 36 CIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 3455677876 678889999999764
No 210
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=31.20 E-value=29 Score=36.34 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=23.8
Q ss_pred hhhchHHHhhcCC---cceEeeccCCCCCCcccc
Q 003480 274 TVEPIIPTIFQRT---KATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 274 ~v~pLV~~vl~G~---NatIfAYGqTGSGKTyTM 304 (816)
+.-+-++.++.|. ..+++-+|.+|||||+-.
T Consensus 9 tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 9 TGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred cCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 3455667777653 678888899999999766
No 211
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=31.11 E-value=32 Score=42.57 Aligned_cols=35 Identities=17% Similarity=0.357 Sum_probs=25.0
Q ss_pred HHhhhhhhchHHHhh-cCCcceEeeccCCCCCCcccc
Q 003480 269 EVYRVTVEPIIPTIF-QRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 269 eVy~~~v~pLV~~vl-~G~NatIfAYGqTGSGKTyTM 304 (816)
.||. ++......++ .|.|-||+.-|.+|||||.|.
T Consensus 76 Hiy~-iA~~Ay~~m~~~~~~QsIiisGESGAGKTet~ 111 (692)
T cd01385 76 HIFA-IADVAYYNMLRKKVNQCIVISGESGSGKTEST 111 (692)
T ss_pred CHHH-HHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 3554 2333333333 588999999999999999997
No 212
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=30.95 E-value=25 Score=36.48 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=23.3
Q ss_pred hhchHHHhhcC---CcceEeeccCCCCCCcccc
Q 003480 275 VEPIIPTIFQR---TKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 275 v~pLV~~vl~G---~NatIfAYGqTGSGKTyTM 304 (816)
.-+-++.++.| ...++.-+|++|||||..+
T Consensus 4 G~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 4 GSKALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred CchhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 34556778876 4567888999999999876
No 213
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.74 E-value=4.5e+02 Score=28.36 Aligned_cols=73 Identities=12% Similarity=0.164 Sum_probs=42.7
Q ss_pred hHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 003480 728 NINALLEEE-EALIAAHRKEIEDTMEIVREEMKLLAEVEQPGSLIDNYVTQLSFVLSRKA-------ASLVSLQARLARF 799 (816)
Q Consensus 728 ~i~~ileeE-E~lI~~HR~~ie~~~elv~eEm~LL~~vd~pg~diD~Yv~~L~~iL~~K~-------~~i~~Lq~~l~~F 799 (816)
.+|++++++ ....+.|-...+...+...|+|+|++++.+ -.+.-+. ...++.+|- +-|..+|++|...
T Consensus 30 ~~D~f~q~~r~~~~nS~~efar~lS~~~~e~e~l~~~l~e---tene~~~-~neL~~ek~~~q~~ieqeik~~q~elEvl 105 (246)
T KOG4657|consen 30 KIDSFIQSPRRRSMNSLVEFARALSQSQVELENLKADLRE---TENELVK-VNELKTEKEARQMGIEQEIKATQSELEVL 105 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666555 356677777777888888888888877766 2222222 233555443 3444555555555
Q ss_pred HHHHH
Q 003480 800 QHRLK 804 (816)
Q Consensus 800 ~~~L~ 804 (816)
+..++
T Consensus 106 ~~n~Q 110 (246)
T KOG4657|consen 106 RRNLQ 110 (246)
T ss_pred HHHHH
Confidence 54444
No 214
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=30.69 E-value=34 Score=42.20 Aligned_cols=35 Identities=14% Similarity=0.377 Sum_probs=25.3
Q ss_pred HHhhhhhhchHHHhh-cCCcceEeeccCCCCCCcccc
Q 003480 269 EVYRVTVEPIIPTIF-QRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 269 eVy~~~v~pLV~~vl-~G~NatIfAYGqTGSGKTyTM 304 (816)
.||.. +......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 Hifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 68 HIFAI-SDNAYTNMQREKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred CHHHH-HHHHHHHHHHcCCCceEEEEcCCCCCeehHH
Confidence 35552 333333333 589999999999999999997
No 215
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=30.58 E-value=20 Score=34.55 Aligned_cols=15 Identities=33% Similarity=0.443 Sum_probs=12.9
Q ss_pred EeeccCCCCCCcccc
Q 003480 290 CFAYGQTGSGKTFTM 304 (816)
Q Consensus 290 IfAYGqTGSGKTyTM 304 (816)
|+-.|..|||||+..
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 567899999999876
No 216
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=30.32 E-value=30 Score=37.27 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=18.4
Q ss_pred hchHHHhhcCCcceEeeccCCCCCCcccc
Q 003480 276 EPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 276 ~pLV~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
+.++..+..|.+ |+-+|.+|+|||...
T Consensus 12 ~~~l~~l~~g~~--vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 12 SRALRYLKSGYP--VHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHhcCCe--EEEEcCCCCCHHHHH
Confidence 334444445554 456899999999876
No 217
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=30.28 E-value=25 Score=42.39 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=18.8
Q ss_pred HHHhhcCCcceEeeccCCCCCCcccc
Q 003480 279 IPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 279 V~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
|..+++|.| |++..+||||||.+.
T Consensus 40 ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 40 LPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHhCCCC--EEEEcCCCCcHHHHH
Confidence 456788988 566789999999764
No 218
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=30.12 E-value=40 Score=39.42 Aligned_cols=19 Identities=42% Similarity=0.447 Sum_probs=16.2
Q ss_pred cceEeeccCCCCCCccccC
Q 003480 287 KATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 287 NatIfAYGqTGSGKTyTM~ 305 (816)
...|+-+|.+|+|||+|..
T Consensus 95 p~vI~lvG~~GsGKTTtaa 113 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAA 113 (437)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4578888999999999983
No 219
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=30.06 E-value=21 Score=30.54 Aligned_cols=15 Identities=33% Similarity=0.558 Sum_probs=12.7
Q ss_pred EeeccCCCCCCcccc
Q 003480 290 CFAYGQTGSGKTFTM 304 (816)
Q Consensus 290 IfAYGqTGSGKTyTM 304 (816)
.+-.|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999877
No 220
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=30.05 E-value=26 Score=42.26 Aligned_cols=18 Identities=33% Similarity=0.416 Sum_probs=14.9
Q ss_pred ceEeeccCCCCCCccccC
Q 003480 288 ATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 288 atIfAYGqTGSGKTyTM~ 305 (816)
-..+-.|+.|+|||||+.
T Consensus 202 ~l~~I~GPPGTGKT~Tlv 219 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTLV 219 (649)
T ss_pred CceEeeCCCCCCceeeHH
Confidence 445668999999999984
No 221
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=29.95 E-value=35 Score=42.08 Aligned_cols=35 Identities=17% Similarity=0.396 Sum_probs=25.6
Q ss_pred HHhhhhhhchHHHhh-cCCcceEeeccCCCCCCcccc
Q 003480 269 EVYRVTVEPIIPTIF-QRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 269 eVy~~~v~pLV~~vl-~G~NatIfAYGqTGSGKTyTM 304 (816)
.||.. +......++ .|.|-||+.-|.+|||||.|.
T Consensus 69 Hifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 69 HLFAI-ANLAFAKMLDAKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred CHHHH-HHHHHHHHHhcCCCceEEEEcCCCCCeehHH
Confidence 36653 333333333 589999999999999999997
No 222
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=29.95 E-value=21 Score=41.46 Aligned_cols=19 Identities=42% Similarity=0.501 Sum_probs=15.2
Q ss_pred eEeeccCCCCCCccccCCC
Q 003480 289 TCFAYGQTGSGKTFTMQPL 307 (816)
Q Consensus 289 tIfAYGqTGSGKTyTM~Gl 307 (816)
+++-.|+||+|||+|+..+
T Consensus 223 ~i~~vGptGvGKTTt~~kL 241 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKL 241 (424)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5666699999999998533
No 223
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=29.95 E-value=15 Score=43.84 Aligned_cols=16 Identities=38% Similarity=0.702 Sum_probs=14.1
Q ss_pred eEeeccCCCCCCcccc
Q 003480 289 TCFAYGQTGSGKTFTM 304 (816)
Q Consensus 289 tIfAYGqTGSGKTyTM 304 (816)
.|+-||++|+|||++.
T Consensus 218 GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIA 233 (512)
T ss_pred ceEEECCCCCcHHHHH
Confidence 4888999999999876
No 224
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=29.84 E-value=4.8e+02 Score=25.76 Aligned_cols=77 Identities=22% Similarity=0.341 Sum_probs=57.8
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHH------------HHHHHH
Q 003480 726 DGNINALLEEEEALIAAHRKEIEDTMEIVREEMKLLAEVEQPGSLIDNYVTQLSFVLSRKAA------------SLVSLQ 793 (816)
Q Consensus 726 de~i~~ileeEE~lI~~HR~~ie~~~elv~eEm~LL~~vd~pg~diD~Yv~~L~~iL~~K~~------------~i~~Lq 793 (816)
...+++|+++=|.+=...+..+++.++-++++|. ..++.....+..=.++|+.+++.... -|..|.
T Consensus 38 ~k~F~~LVk~Ge~~e~~~~~~~~e~~~~~~~~~~--~~~~~~~~~~~~~~dklE~~fd~rV~~aL~rLgvPs~~dv~~L~ 115 (132)
T PF05597_consen 38 SKVFEALVKEGEKLEKKTRKKAEEQVEEARDQVK--SRVDDVKERATGQWDKLEQAFDERVARALNRLGVPSRKDVEALS 115 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4689999999999999999999999999998774 33444444666666777777776543 456677
Q ss_pred HHHHHHHHHHH
Q 003480 794 ARLARFQHRLK 804 (816)
Q Consensus 794 ~~l~~F~~~L~ 804 (816)
.|+.++...|.
T Consensus 116 ~rId~L~~~v~ 126 (132)
T PF05597_consen 116 ARIDQLTAQVE 126 (132)
T ss_pred HHHHHHHHHHH
Confidence 88887776665
No 225
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=29.71 E-value=29 Score=36.00 Aligned_cols=31 Identities=26% Similarity=0.298 Sum_probs=23.7
Q ss_pred hhhchHHHhhcCC---cceEeeccCCCCCCcccc
Q 003480 274 TVEPIIPTIFQRT---KATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 274 ~v~pLV~~vl~G~---NatIfAYGqTGSGKTyTM 304 (816)
+.-+-++.++.|. ...+.-+|.+|||||..+
T Consensus 7 tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 40 (225)
T PRK09361 7 TGCKMLDELLGGGFERGTITQIYGPPGSGKTNIC 40 (225)
T ss_pred CCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 3445578888654 567889999999999877
No 226
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=29.50 E-value=21 Score=42.12 Aligned_cols=18 Identities=28% Similarity=0.493 Sum_probs=15.5
Q ss_pred ceEeeccCCCCCCccccC
Q 003480 288 ATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 288 atIfAYGqTGSGKTyTM~ 305 (816)
-.|+-||++|+|||+.+.
T Consensus 89 ~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 358889999999999973
No 227
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=29.43 E-value=33 Score=42.34 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=27.0
Q ss_pred cceEeeccCCCCCCccccC-----------------------CCchhHHHHHHHHhcc
Q 003480 287 KATCFAYGQTGSGKTFTMQ-----------------------PLPLRAAEDLVRLLHQ 321 (816)
Q Consensus 287 NatIfAYGqTGSGKTyTM~-----------------------Gl~~ra~~dLf~~l~~ 321 (816)
...|+-||+.|+||||... |-....+++||.....
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~ 758 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQS 758 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhc
Confidence 4668999999999999862 3345678888887654
No 228
>PRK00131 aroK shikimate kinase; Reviewed
Probab=29.36 E-value=24 Score=34.35 Aligned_cols=17 Identities=24% Similarity=0.276 Sum_probs=15.0
Q ss_pred ceEeeccCCCCCCcccc
Q 003480 288 ATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 288 atIfAYGqTGSGKTyTM 304 (816)
.+|+-+|.+|||||+..
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 47899999999999876
No 229
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=29.32 E-value=25 Score=40.99 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=18.6
Q ss_pred hHHHhhcCCcceEeeccCCCCCCcccc
Q 003480 278 IIPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 278 LV~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
.+..+++|.|+.+ ..+||||||.+.
T Consensus 117 ai~~~~~G~dvi~--~apTGSGKTlay 141 (475)
T PRK01297 117 VLGYTLAGHDAIG--RAQTGTGKTAAF 141 (475)
T ss_pred HHHHHhCCCCEEE--ECCCCChHHHHH
Confidence 3456788988654 559999999664
No 230
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=29.12 E-value=22 Score=38.95 Aligned_cols=56 Identities=25% Similarity=0.397 Sum_probs=32.3
Q ss_pred HHHHHHcCCCCC----ccCCCCccchh----hhhcc----CCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhcccccC
Q 003480 476 ECIRALDNDQIH----IPFRGSKLTEV----LRDSF----VGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSLSKS 541 (816)
Q Consensus 476 ~vI~AL~~~~~h----IPYRdSKLTrL----LqDsL----gGnskT~mIa~VSPs~~~~eETLsTLrfA~Rak~I~~~ 541 (816)
.|++||+..... =|| |.|--+ ||+-| ..-++|+++++ .+.+| .|++|+|+.-+..+
T Consensus 145 Gv~RALAadP~ilLMDEPF--gALDpI~R~~lQ~e~~~lq~~l~kTivfVT-----HDidE---A~kLadri~vm~~G 212 (309)
T COG1125 145 GVARALAADPPILLMDEPF--GALDPITRKQLQEEIKELQKELGKTIVFVT-----HDIDE---ALKLADRIAVMDAG 212 (309)
T ss_pred HHHHHHhcCCCeEeecCCc--cccChhhHHHHHHHHHHHHHHhCCEEEEEe-----cCHHH---HHhhhceEEEecCC
Confidence 578888654432 255 333322 22222 22367888776 45555 47899999887644
No 231
>KOG2669 consensus Regulator of nuclear mRNA [RNA processing and modification]
Probab=29.09 E-value=1.5e+02 Score=33.45 Aligned_cols=28 Identities=29% Similarity=0.527 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 003480 789 LVSLQARLARFQHRLKEQEILSRKRVPR 816 (816)
Q Consensus 789 i~~Lq~~l~~F~~~L~eEE~ls~~~~~~ 816 (816)
++.|+.+...|..||.||+.+.+...||
T Consensus 214 k~~~~~~~e~~~k~lee~~~lL~e~~~~ 241 (325)
T KOG2669|consen 214 KITLNSLIESLAKHLEEEEMLLREVNPR 241 (325)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446777777777888777777766553
No 232
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=28.76 E-value=51 Score=36.86 Aligned_cols=55 Identities=20% Similarity=0.309 Sum_probs=35.7
Q ss_pred eEeeccCCCCCCcccc-----------------------CCCchhHHHHHHHHhccccccCceeEEEEEeEEeeCCeeec
Q 003480 289 TCFAYGQTGSGKTFTM-----------------------QPLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFD 345 (816)
Q Consensus 289 tIfAYGqTGSGKTyTM-----------------------~Gl~~ra~~dLf~~l~~~~~~~~~f~V~vSf~EIYnEkV~D 345 (816)
.|+-||..|+|||... .|-.|+.++.||+....... -.|++-=+.-.+.+-||
T Consensus 221 GVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~ap----SIvFiDEIdAiGtKRyd 296 (440)
T KOG0726|consen 221 GVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAP----SIVFIDEIDAIGTKRYD 296 (440)
T ss_pred eeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCC----ceEEeehhhhhcccccc
Confidence 4889999999998654 15668999999998776321 12333323334555666
Q ss_pred cc
Q 003480 346 LL 347 (816)
Q Consensus 346 LL 347 (816)
--
T Consensus 297 s~ 298 (440)
T KOG0726|consen 297 SN 298 (440)
T ss_pred CC
Confidence 43
No 233
>PHA02244 ATPase-like protein
Probab=28.75 E-value=37 Score=39.02 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=14.8
Q ss_pred cCCcceEeeccCCCCCCcccc
Q 003480 284 QRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 284 ~G~NatIfAYGqTGSGKTyTM 304 (816)
.|.+ |+-+|++|+|||+..
T Consensus 118 ~~~P--VLL~GppGtGKTtLA 136 (383)
T PHA02244 118 ANIP--VFLKGGAGSGKNHIA 136 (383)
T ss_pred cCCC--EEEECCCCCCHHHHH
Confidence 4444 555899999999877
No 234
>PRK14974 cell division protein FtsY; Provisional
Probab=28.73 E-value=45 Score=37.65 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=16.0
Q ss_pred cceEeeccCCCCCCcccc
Q 003480 287 KATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 287 NatIfAYGqTGSGKTyTM 304 (816)
...|.-.|.+|+|||.|+
T Consensus 140 ~~vi~~~G~~GvGKTTti 157 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTI 157 (336)
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 457888899999999998
No 235
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=28.66 E-value=28 Score=38.80 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=17.0
Q ss_pred CCcceEeeccCCCCCCcccc
Q 003480 285 RTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 285 G~NatIfAYGqTGSGKTyTM 304 (816)
..+.-|+-+|.+||||++..
T Consensus 27 ~~~~pVlI~GE~GtGK~~lA 46 (326)
T PRK11608 27 PLDKPVLIIGERGTGKELIA 46 (326)
T ss_pred CCCCCEEEECCCCCcHHHHH
Confidence 56778999999999998765
No 236
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=28.33 E-value=29 Score=39.14 Aligned_cols=29 Identities=31% Similarity=0.430 Sum_probs=21.7
Q ss_pred hhchHHHhhcCCcceEeeccCCCCCCcccc
Q 003480 275 VEPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 275 v~pLV~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
...++..++.+. ..|+-.|.||||||.+|
T Consensus 167 ~~~~L~~~v~~~-~~ili~G~tGsGKTTll 195 (340)
T TIGR03819 167 VARLLRAIVAAR-LAFLISGGTGSGKTTLL 195 (340)
T ss_pred HHHHHHHHHhCC-CeEEEECCCCCCHHHHH
Confidence 344555666543 68888999999999887
No 237
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=28.24 E-value=25 Score=35.01 Aligned_cols=15 Identities=40% Similarity=0.605 Sum_probs=13.3
Q ss_pred EeeccCCCCCCcccc
Q 003480 290 CFAYGQTGSGKTFTM 304 (816)
Q Consensus 290 IfAYGqTGSGKTyTM 304 (816)
|+.+|..|||||+..
T Consensus 2 i~i~G~pGsGKst~a 16 (183)
T TIGR01359 2 VFVLGGPGSGKGTQC 16 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999875
No 238
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=28.17 E-value=1.2e+02 Score=34.65 Aligned_cols=118 Identities=22% Similarity=0.320 Sum_probs=71.8
Q ss_pred CCCCChHHHhhhhhhchHHHhhcCCcceEeeccCCCCCCccccC-------------------CCchh---HHHHHHHHh
Q 003480 262 DERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQ-------------------PLPLR---AAEDLVRLL 319 (816)
Q Consensus 262 d~~asQeeVy~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM~-------------------Gl~~r---a~~dLf~~l 319 (816)
+-...|..+++- +-..++.|-.-.|+-.|+.|||||+-+- |...- |+..|-..+
T Consensus 28 g~~~~~~~l~~~----lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql 103 (408)
T KOG2228|consen 28 GVQDEQKHLSEL----LKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQL 103 (408)
T ss_pred ehHHHHHHHHHH----HHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHH
Confidence 333456666652 2246678888889999999999998862 33333 667777666
Q ss_pred ccccccCceeEEEEEeEEe--------------------eCCeeecccccccc-------ccccccCCCcEEEeccEEEE
Q 003480 320 HQPVYRNQRFKLWLSYFEI--------------------YGGKLFDLLGERKK-------LCMREDGRQQVCIVGLQEFE 372 (816)
Q Consensus 320 ~~~~~~~~~f~V~vSf~EI--------------------YnEkV~DLL~~~~~-------L~ired~~~~v~V~gLtev~ 372 (816)
.....+ ...+..||-|. +--.=+||..+... ..+.+..+.-++|.|+|
T Consensus 104 ~~e~~~--~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T--- 178 (408)
T KOG2228|consen 104 ALELNR--IVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT--- 178 (408)
T ss_pred HHHHhh--hheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee---
Confidence 654332 24456666662 11122566654321 24556667778887765
Q ss_pred eccHHHHHHHHHHHHhcc
Q 003480 373 VSDVQIVKEYIEKGNAAR 390 (816)
Q Consensus 373 V~S~eE~~~lL~~G~~~R 390 (816)
+--++++++++--+.|
T Consensus 179 --trld~lE~LEKRVKSR 194 (408)
T KOG2228|consen 179 --TRLDILELLEKRVKSR 194 (408)
T ss_pred --ccccHHHHHHHHHHhh
Confidence 4456778887755544
No 239
>KOG4384 consensus Uncharacterized SAM domain protein [General function prediction only]
Probab=27.98 E-value=31 Score=38.91 Aligned_cols=60 Identities=20% Similarity=0.390 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHhCccccccccccCCCCc-ccchhhhh---ccccccchHHHHHHHHHHHhhccC
Q 003480 36 GDAVMARWLQSAGLQHLASPLASNGIDH-RLLPNLLM---QGYGAQSAEEKQRLFKLMRNLNFN 95 (816)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 95 (816)
+-.+|..||+.-||+|+...|-..|-|. +.+-.+.- ...|+++...|.||..-++.+.--
T Consensus 214 ~~~~~~ewL~~i~le~y~~~~L~nGYd~le~~k~i~e~dL~~lgI~nP~Hr~kLL~av~~~~e~ 277 (361)
T KOG4384|consen 214 HPKSLEEWLRRIGLEEYIETLLENGYDTLEDLKDITEEDLEELGIDNPDHRKKLLSAVELLKEI 277 (361)
T ss_pred CchHHHHHHHHhhHHHHHHHHHHcchHHHHHHHhccHHHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 4578999999999999999998888885 44433333 346999999999999988766543
No 240
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=27.87 E-value=35 Score=35.12 Aligned_cols=31 Identities=19% Similarity=0.191 Sum_probs=23.2
Q ss_pred hhchHHHhhcCC---cceEeeccCCCCCCccccC
Q 003480 275 VEPIIPTIFQRT---KATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 275 v~pLV~~vl~G~---NatIfAYGqTGSGKTyTM~ 305 (816)
.-+-++.++.|. ...+.-+|.+|+|||..+.
T Consensus 4 G~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~ 37 (226)
T cd01393 4 GSKALDELLGGGIPTGRITEIFGEFGSGKTQLCL 37 (226)
T ss_pred CcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHH
Confidence 445677888643 5567889999999998773
No 241
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=27.77 E-value=32 Score=42.81 Aligned_cols=19 Identities=37% Similarity=0.562 Sum_probs=16.2
Q ss_pred CcceEeeccCCCCCCcccc
Q 003480 286 TKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 286 ~NatIfAYGqTGSGKTyTM 304 (816)
-|-.|+.+|+||||||.-+
T Consensus 270 ~n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 270 ENPVVIICGETGSGKTTQV 288 (1172)
T ss_pred cCCeEEEecCCCCCccccc
Confidence 4667888999999999876
No 242
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=27.76 E-value=25 Score=43.57 Aligned_cols=35 Identities=31% Similarity=0.435 Sum_probs=25.4
Q ss_pred chHHHhhcCCcceEeeccCCCCCCccccCCCchhH
Q 003480 277 PIIPTIFQRTKATCFAYGQTGSGKTFTMQPLPLRA 311 (816)
Q Consensus 277 pLV~~vl~G~NatIfAYGqTGSGKTyTM~Gl~~ra 311 (816)
.++.-+..+....++-||++|+|||+...++..+.
T Consensus 193 ~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 193 RTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45555555566678899999999999986655443
No 243
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=27.61 E-value=22 Score=41.54 Aligned_cols=32 Identities=19% Similarity=0.407 Sum_probs=21.6
Q ss_pred chHHHhhcCCcceEeeccCCCCCCccccCCCchh
Q 003480 277 PIIPTIFQRTKATCFAYGQTGSGKTFTMQPLPLR 310 (816)
Q Consensus 277 pLV~~vl~G~NatIfAYGqTGSGKTyTM~Gl~~r 310 (816)
.++.-+=.++| ++-.|++|+||||...++.+.
T Consensus 201 rl~~fve~~~N--li~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 201 RLLPLVEPNYN--LIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred hhHHHHhcCCc--EEEECCCCCCHHHHHHHHhHH
Confidence 33344445566 466799999999998765544
No 244
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=27.43 E-value=26 Score=38.17 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=18.9
Q ss_pred cCCcceEeeccCCCCCCcccc
Q 003480 284 QRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 284 ~G~NatIfAYGqTGSGKTyTM 304 (816)
.|+..+|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 488899999999999999876
No 245
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=27.40 E-value=30 Score=42.09 Aligned_cols=45 Identities=16% Similarity=0.267 Sum_probs=28.0
Q ss_pred EEEeeeeeCCCCChHHHhhhhhhchHHHhhcCCcceEeeccCCCCCCcccc
Q 003480 254 EFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 254 ~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
.++|+.+.+.+. .+..+.. .+..+ ...+..|+-+|.+||||++..
T Consensus 321 ~~~~~~l~g~s~----~~~~~~~-~~~~~-a~~~~pvli~Ge~GtGK~~~A 365 (638)
T PRK11388 321 SHTFDHMPQDSP----QMRRLIH-FGRQA-AKSSFPVLLCGEEGVGKALLA 365 (638)
T ss_pred cccccceEECCH----HHHHHHH-HHHHH-hCcCCCEEEECCCCcCHHHHH
Confidence 467777765533 3332222 22333 246778999999999998765
No 246
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=27.32 E-value=34 Score=35.52 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=22.4
Q ss_pred hchHHHhhcC---CcceEeeccCCCCCCcccc
Q 003480 276 EPIIPTIFQR---TKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 276 ~pLV~~vl~G---~NatIfAYGqTGSGKTyTM 304 (816)
-+-++.++.| .+.+++.+|.+|||||...
T Consensus 5 I~~LD~~l~GGip~gs~~li~G~~GsGKT~l~ 36 (226)
T PF06745_consen 5 IPGLDELLGGGIPKGSVVLISGPPGSGKTTLA 36 (226)
T ss_dssp STTHHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred chhHHHhhcCCCCCCcEEEEEeCCCCCcHHHH
Confidence 3456777755 5788999999999998544
No 247
>PRK05580 primosome assembly protein PriA; Validated
Probab=27.07 E-value=30 Score=42.66 Aligned_cols=37 Identities=19% Similarity=0.081 Sum_probs=23.8
Q ss_pred eCCCCChHHHhhhhhhchHHHhhcCCcceEeeccCCCCCCcccc
Q 003480 261 LDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 261 Fd~~asQeeVy~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
+.....|.++++..... . ....++.+|.||||||.+.
T Consensus 143 ~~Lt~~Q~~ai~~i~~~----~---~~~~~Ll~~~TGSGKT~v~ 179 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAA----A---GFSPFLLDGVTGSGKTEVY 179 (679)
T ss_pred CCCCHHHHHHHHHHHhc----c---CCCcEEEECCCCChHHHHH
Confidence 34445576666543322 1 3345899999999999765
No 248
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=26.85 E-value=42 Score=41.01 Aligned_cols=34 Identities=29% Similarity=0.426 Sum_probs=26.6
Q ss_pred ceEeeccCCCCCCccccC-----------------------CCchhHHHHHHHHhcc
Q 003480 288 ATCFAYGQTGSGKTFTMQ-----------------------PLPLRAAEDLVRLLHQ 321 (816)
Q Consensus 288 atIfAYGqTGSGKTyTM~-----------------------Gl~~ra~~dLf~~l~~ 321 (816)
-.|+.||+.|+|||.+.. |-..++++++|+...+
T Consensus 469 kGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~ 525 (693)
T KOG0730|consen 469 KGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQ 525 (693)
T ss_pred ceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhh
Confidence 459999999999998752 3446788888887665
No 249
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=26.85 E-value=29 Score=41.61 Aligned_cols=45 Identities=22% Similarity=0.462 Sum_probs=29.3
Q ss_pred EEEeeeeeCCCCChHHHhhhhhhchHHHhhcCCcceEeeccCCCCCCcccc
Q 003480 254 EFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 254 ~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
.|.|+.+++....-..+.+ .+.. +...+..|+-+|.+||||++..
T Consensus 215 ~~~f~~iiG~S~~m~~~~~-----~i~~-~A~s~~pVLI~GE~GTGKe~~A 259 (538)
T PRK15424 215 RYVLGDLLGQSPQMEQVRQ-----TILL-YARSSAAVLIQGETGTGKELAA 259 (538)
T ss_pred ccchhheeeCCHHHHHHHH-----HHHH-HhCCCCcEEEECCCCCCHHHHH
Confidence 3677777776432222222 2222 3457889999999999998765
No 250
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=26.79 E-value=1.4e+02 Score=25.99 Aligned_cols=37 Identities=24% Similarity=0.394 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003480 771 IDNYVTQLSFVLSRKAASLVSLQARLARFQHRLKEQE 807 (816)
Q Consensus 771 iD~Yv~~L~~iL~~K~~~i~~Lq~~l~~F~~~L~eEE 807 (816)
.|+-|..|+.++.+....|..|+.+|..+..+|++=+
T Consensus 16 qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 16 QEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4667889999999999999999999999999998644
No 251
>PHA01747 putative ATP-dependent protease
Probab=26.71 E-value=29 Score=39.85 Aligned_cols=94 Identities=16% Similarity=0.269 Sum_probs=55.4
Q ss_pred HhhhhhhchHHHhhcCCcceEeeccCCCCCCccccCCCchhHHHHHHHHhccccccCceeEEEEEeEEeeCCe------e
Q 003480 270 VYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGK------L 343 (816)
Q Consensus 270 Vy~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM~Gl~~ra~~dLf~~l~~~~~~~~~f~V~vSf~EIYnEk------V 343 (816)
++=.-+-|+|+.-..+.|.-++=.|+.||||||+..-+ .. +|-+-|++++ +
T Consensus 173 l~L~RLiPlVE~~~~~~NyNliELgPRGTGKS~~f~ei------------s~-----------fsp~~iSGG~~TvA~LF 229 (425)
T PHA01747 173 LTLPRLLPLFTSPVSKRPVHIIELSNRGTGKTTTFVIL------------QE-----------LFNFRYYTEPPTYANLV 229 (425)
T ss_pred HHHHhhhhheeccCCCCCeeEEEecCCCCChhhHHHHh------------hh-----------cCCceeeCCCCchHHhe
Confidence 33334668888666788889999999999999986321 00 0001112222 3
Q ss_pred eccccccccccccccCCCcEEEeccEEEEeccHHHHHHHHHHHHhc
Q 003480 344 FDLLGERKKLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAA 389 (816)
Q Consensus 344 ~DLL~~~~~L~ired~~~~v~V~gLtev~V~S~eE~~~lL~~G~~~ 389 (816)
||.-.....+.-+.| .|.+..+..+.-++..++..++..+..+
T Consensus 230 yN~~t~~~GLVg~~D---~VaFDEVa~i~f~~~kdiv~IMKdYMes 272 (425)
T PHA01747 230 YDAKTNALGLVFLSN---GLIFDEIQTWKDSNMRAINSTLSTGMEN 272 (425)
T ss_pred EecCCCceeEEeecc---EEEEEccccccCCCHHHHHHHHHHHhhc
Confidence 444433333433433 3455555555567778888888877655
No 252
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=26.64 E-value=75 Score=38.30 Aligned_cols=32 Identities=25% Similarity=0.272 Sum_probs=23.9
Q ss_pred EeeccCCCCCCccccC--------CC----chhHHHHHHHHhcc
Q 003480 290 CFAYGQTGSGKTFTMQ--------PL----PLRAAEDLVRLLHQ 321 (816)
Q Consensus 290 IfAYGqTGSGKTyTM~--------Gl----~~ra~~dLf~~l~~ 321 (816)
||..|+|.|||||-.. |+ .-..+.++|+.++.
T Consensus 194 i~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na 237 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNA 237 (700)
T ss_pred EEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhh
Confidence 8999999999999862 32 33456678887765
No 253
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=26.49 E-value=26 Score=41.48 Aligned_cols=18 Identities=39% Similarity=0.414 Sum_probs=15.4
Q ss_pred ceEeeccCCCCCCccccC
Q 003480 288 ATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 288 atIfAYGqTGSGKTyTM~ 305 (816)
..+.-.|++|+|||.|+.
T Consensus 257 ~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTA 274 (484)
T ss_pred cEEEEECCCCccHHHHHH
Confidence 467778999999999994
No 254
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=26.48 E-value=27 Score=33.39 Aligned_cols=16 Identities=31% Similarity=0.353 Sum_probs=13.9
Q ss_pred eEeeccCCCCCCcccc
Q 003480 289 TCFAYGQTGSGKTFTM 304 (816)
Q Consensus 289 tIfAYGqTGSGKTyTM 304 (816)
+|+.+|..|||||+..
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4788999999999876
No 255
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=26.48 E-value=44 Score=35.01 Aligned_cols=36 Identities=14% Similarity=0.166 Sum_probs=20.9
Q ss_pred HHhhhhhhchHHHhhc-CCcceEeeccCCCCCCcccc
Q 003480 269 EVYRVTVEPIIPTIFQ-RTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 269 eVy~~~v~pLV~~vl~-G~NatIfAYGqTGSGKTyTM 304 (816)
.+|...+.-+...+-. +....|.-.|.+|||||+.+
T Consensus 14 ~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 14 AVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHH
Confidence 3444444443333322 33445555699999999877
No 256
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=26.47 E-value=24 Score=34.87 Aligned_cols=17 Identities=35% Similarity=0.618 Sum_probs=14.4
Q ss_pred ceEeeccCCCCCCcccc
Q 003480 288 ATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 288 atIfAYGqTGSGKTyTM 304 (816)
...+-||.+|+|||..|
T Consensus 20 g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 45567899999999988
No 257
>PRK02119 hypothetical protein; Provisional
Probab=26.43 E-value=1.8e+02 Score=25.62 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003480 771 IDNYVTQLSFVLSRKAASLVSLQARLARFQHRLKEQ 806 (816)
Q Consensus 771 iD~Yv~~L~~iL~~K~~~i~~Lq~~l~~F~~~L~eE 806 (816)
.|+=|..|+.++.+....|..|+.+|..+..+|++-
T Consensus 21 QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 21 QENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456688899999999999999999999999999863
No 258
>PHA02653 RNA helicase NPH-II; Provisional
Probab=26.31 E-value=37 Score=41.87 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=17.9
Q ss_pred hHHHhhcCCcceEeeccCCCCCCccc
Q 003480 278 IIPTIFQRTKATCFAYGQTGSGKTFT 303 (816)
Q Consensus 278 LV~~vl~G~NatIfAYGqTGSGKTyT 303 (816)
++..+++|. .|+..|+||||||..
T Consensus 172 il~~i~~gk--dvIv~A~TGSGKTtq 195 (675)
T PHA02653 172 IFEAWISRK--PVVLTGGTGVGKTSQ 195 (675)
T ss_pred HHHHHHhCC--CEEEECCCCCCchhH
Confidence 445555665 458899999999975
No 259
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=26.16 E-value=38 Score=34.91 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=21.2
Q ss_pred chHHHhhcC-C--cceEeeccCCCCCCcccc
Q 003480 277 PIIPTIFQR-T--KATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 277 pLV~~vl~G-~--NatIfAYGqTGSGKTyTM 304 (816)
+-++.++.| . ...+..+|.+|||||..+
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIA 36 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHH
Confidence 446777764 3 455789999999999876
No 260
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=26.15 E-value=27 Score=34.74 Aligned_cols=16 Identities=25% Similarity=0.551 Sum_probs=14.1
Q ss_pred eEeeccCCCCCCcccc
Q 003480 289 TCFAYGQTGSGKTFTM 304 (816)
Q Consensus 289 tIfAYGqTGSGKTyTM 304 (816)
.|+-.|++|||||.++
T Consensus 3 ~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLL 18 (179)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999988
No 261
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=26.14 E-value=35 Score=40.77 Aligned_cols=43 Identities=26% Similarity=0.501 Sum_probs=30.8
Q ss_pred eeEEEeeeeeCCCCChHHHhhhhhhchHHHhhcCCcceEeeccCCCCCC
Q 003480 252 KHEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGK 300 (816)
Q Consensus 252 ~~~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~NatIfAYGqTGSGK 300 (816)
...|+||.+.+....-.++-+ ++ ..+.+.+++|+-+|.||+||
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~-----~a-kr~A~tdstVLi~GESGTGK 281 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLE-----LA-KRIAKTDSTVLILGESGTGK 281 (560)
T ss_pred ccccchhhhccCCHHHHHHHH-----HH-HhhcCCCCcEEEecCCCccH
Confidence 456999999987543322222 22 34578999999999999999
No 262
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=26.13 E-value=39 Score=40.06 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=18.1
Q ss_pred HHHhhcCCcceEeeccCCCCCCcccc
Q 003480 279 IPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 279 V~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
+..++.|.| +++..+||||||.+.
T Consensus 152 ip~il~g~d--viv~ApTGSGKTlay 175 (518)
T PLN00206 152 IPAALSGRS--LLVSADTGSGKTASF 175 (518)
T ss_pred HHHHhcCCC--EEEEecCCCCccHHH
Confidence 455678876 577779999999653
No 263
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=26.13 E-value=20 Score=44.32 Aligned_cols=51 Identities=16% Similarity=0.393 Sum_probs=28.6
Q ss_pred EEEeeeeeCCCCChHHHhhhhhhchHH-HhhcCC----cceEeeccCCCCCCcccc
Q 003480 254 EFCFDAVLDERVTNDEVYRVTVEPIIP-TIFQRT----KATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 254 ~F~FD~VFd~~asQeeVy~~~v~pLV~-~vl~G~----NatIfAYGqTGSGKTyTM 304 (816)
.++||.|-+-+..-+.+.+.+..|+-. .+++.+ .-.|+-||++|+|||+.+
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHH
Confidence 467777665433333343333223221 222221 245889999999999877
No 264
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=26.10 E-value=37 Score=33.07 Aligned_cols=16 Identities=38% Similarity=0.378 Sum_probs=13.7
Q ss_pred eEeeccCCCCCCcccc
Q 003480 289 TCFAYGQTGSGKTFTM 304 (816)
Q Consensus 289 tIfAYGqTGSGKTyTM 304 (816)
.|.-+|+.|||||+..
T Consensus 2 iI~i~G~~GSGKstia 17 (171)
T TIGR02173 2 IITISGPPGSGKTTVA 17 (171)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999776
No 265
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=26.01 E-value=45 Score=38.88 Aligned_cols=18 Identities=44% Similarity=0.495 Sum_probs=15.8
Q ss_pred ceEeeccCCCCCCccccC
Q 003480 288 ATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 288 atIfAYGqTGSGKTyTM~ 305 (816)
..|+-.|++|+|||+|+.
T Consensus 242 ~vI~LVGptGvGKTTTia 259 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLA 259 (436)
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 567888999999999994
No 266
>PRK07261 topology modulation protein; Provisional
Probab=25.95 E-value=28 Score=34.93 Aligned_cols=15 Identities=33% Similarity=0.388 Sum_probs=13.0
Q ss_pred EeeccCCCCCCcccc
Q 003480 290 CFAYGQTGSGKTFTM 304 (816)
Q Consensus 290 IfAYGqTGSGKTyTM 304 (816)
|+-.|.+|||||+.+
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999999876
No 267
>PRK00736 hypothetical protein; Provisional
Probab=25.83 E-value=2e+02 Score=25.03 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003480 771 IDNYVTQLSFVLSRKAASLVSLQARLARFQHRLKEQE 807 (816)
Q Consensus 771 iD~Yv~~L~~iL~~K~~~i~~Lq~~l~~F~~~L~eEE 807 (816)
.|+=|..|+.++.+...-|..|+.+|..+..+|++-+
T Consensus 17 qe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 17 QEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566888999999999999999999999999998643
No 268
>PRK00295 hypothetical protein; Provisional
Probab=25.76 E-value=2e+02 Score=25.02 Aligned_cols=37 Identities=24% Similarity=0.280 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003480 771 IDNYVTQLSFVLSRKAASLVSLQARLARFQHRLKEQE 807 (816)
Q Consensus 771 iD~Yv~~L~~iL~~K~~~i~~Lq~~l~~F~~~L~eEE 807 (816)
.|+=|..|+.++.+...-|..|+.+|..+..+|++-+
T Consensus 17 qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 17 QDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566888999999999999999999999999998744
No 269
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=25.76 E-value=27 Score=43.50 Aligned_cols=19 Identities=37% Similarity=0.573 Sum_probs=16.7
Q ss_pred cceEeeccCCCCCCccccC
Q 003480 287 KATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 287 NatIfAYGqTGSGKTyTM~ 305 (816)
|..++..|.||||||++|.
T Consensus 430 n~n~~I~G~tGsGKS~~~~ 448 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFMQ 448 (797)
T ss_pred ccceEEEcCCCCCHHHHHH
Confidence 5668889999999999995
No 270
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=25.63 E-value=34 Score=38.79 Aligned_cols=15 Identities=27% Similarity=0.457 Sum_probs=13.4
Q ss_pred EeeccCCCCCCcccc
Q 003480 290 CFAYGQTGSGKTFTM 304 (816)
Q Consensus 290 IfAYGqTGSGKTyTM 304 (816)
++.+|.||||||+++
T Consensus 2 ~lv~g~tGsGKt~~~ 16 (384)
T cd01126 2 VLVFAPTRSGKGVGF 16 (384)
T ss_pred eeEecCCCCCCccEE
Confidence 578899999999887
No 271
>PRK04328 hypothetical protein; Provisional
Probab=25.62 E-value=40 Score=36.05 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=22.7
Q ss_pred hhchHHHhhcC---CcceEeeccCCCCCCccc
Q 003480 275 VEPIIPTIFQR---TKATCFAYGQTGSGKTFT 303 (816)
Q Consensus 275 v~pLV~~vl~G---~NatIfAYGqTGSGKTyT 303 (816)
.-+-++.++.| ...+++-+|.+|||||..
T Consensus 8 Gi~~LD~lL~GGip~gs~ili~G~pGsGKT~l 39 (249)
T PRK04328 8 GIPGMDEILYGGIPERNVVLLSGGPGTGKSIF 39 (249)
T ss_pred CchhHHHHhcCCCcCCcEEEEEcCCCCCHHHH
Confidence 34556788876 578899999999999854
No 272
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=25.61 E-value=2.2e+02 Score=26.64 Aligned_cols=34 Identities=35% Similarity=0.581 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcC
Q 003480 731 ALLEEEEALIAAHRKEIEDTMEIVREEMKLLAEVEQ 766 (816)
Q Consensus 731 ~ileeEE~lI~~HR~~ie~~~elv~eEm~LL~~vd~ 766 (816)
.|+++|.++|... .++..++++.++-.++..+..
T Consensus 22 ~ll~~e~~~l~~~--d~~~l~~~~~~k~~l~~~l~~ 55 (143)
T PF05130_consen 22 ELLEEEREALISG--DIDELEELVEEKQELLEELRE 55 (143)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433 455666666665555544443
No 273
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=25.50 E-value=25 Score=36.61 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.4
Q ss_pred cceEeeccCCCCCCccccCCCchhHHH
Q 003480 287 KATCFAYGQTGSGKTFTMQPLPLRAAE 313 (816)
Q Consensus 287 NatIfAYGqTGSGKTyTM~Gl~~ra~~ 313 (816)
.+.|..||.+|.|||+...|+..|++.
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g 48 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVG 48 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHH
Confidence 478999999999999999988877773
No 274
>PF02478 Pneumo_phosprot: Pneumovirus phosphoprotein; InterPro: IPR003487 This family represents a phosphoprotein from Paramyxoviridae, which could be a putative RNA polymerase alpha subunit that may function in template binding [].; GO: 0003968 RNA-directed RNA polymerase activity
Probab=25.40 E-value=1.8e+02 Score=31.56 Aligned_cols=59 Identities=22% Similarity=0.288 Sum_probs=46.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHH
Q 003480 725 SDGNINALLEEEEALIAAHRKEIE-DTMEIVREEMKLLAEVEQPGSLIDNYVTQLSFVLS 783 (816)
Q Consensus 725 ~de~i~~ileeEE~lI~~HR~~ie-~~~elv~eEm~LL~~vd~pg~diD~Yv~~L~~iL~ 783 (816)
-|..-|+++-.=|+||+.-|+.+. ..|+++++||..=..++.-..-+-.-+..|+.||+
T Consensus 198 RDgIRDAMiG~REElI~~I~~Eak~kaae~m~eE~~qr~kig~gsvkLTekakeLnkive 257 (279)
T PF02478_consen 198 RDGIRDAMIGLREELIEDIISEAKGKAAEMMREEESQRAKIGDGSVKLTEKAKELNKIVE 257 (279)
T ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCceeecHhHHHHHHHhh
Confidence 377889999999999999999987 89999999999877776644444555556666654
No 275
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=25.30 E-value=36 Score=33.71 Aligned_cols=16 Identities=38% Similarity=0.490 Sum_probs=13.6
Q ss_pred eEeeccCCCCCCcccc
Q 003480 289 TCFAYGQTGSGKTFTM 304 (816)
Q Consensus 289 tIfAYGqTGSGKTyTM 304 (816)
.|+..|..|||||+..
T Consensus 5 ii~i~G~~GsGKsTl~ 20 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQC 20 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999876
No 276
>CHL00181 cbbX CbbX; Provisional
Probab=25.27 E-value=28 Score=38.25 Aligned_cols=15 Identities=33% Similarity=0.368 Sum_probs=13.7
Q ss_pred EeeccCCCCCCcccc
Q 003480 290 CFAYGQTGSGKTFTM 304 (816)
Q Consensus 290 IfAYGqTGSGKTyTM 304 (816)
++-||++|+|||+..
T Consensus 62 ill~G~pGtGKT~lA 76 (287)
T CHL00181 62 MSFTGSPGTGKTTVA 76 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 677999999999987
No 277
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=25.22 E-value=27 Score=38.14 Aligned_cols=16 Identities=31% Similarity=0.349 Sum_probs=14.3
Q ss_pred eEeeccCCCCCCcccc
Q 003480 289 TCFAYGQTGSGKTFTM 304 (816)
Q Consensus 289 tIfAYGqTGSGKTyTM 304 (816)
-|+-+|++|||||+..
T Consensus 60 ~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVA 75 (284)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 5888999999999876
No 278
>PRK00846 hypothetical protein; Provisional
Probab=25.14 E-value=2e+02 Score=25.83 Aligned_cols=37 Identities=14% Similarity=0.076 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003480 771 IDNYVTQLSFVLSRKAASLVSLQARLARFQHRLKEQE 807 (816)
Q Consensus 771 iD~Yv~~L~~iL~~K~~~i~~Lq~~l~~F~~~L~eEE 807 (816)
.|+=|..|+.++.+....|..|+.+|..+..+|++=+
T Consensus 25 Qe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 25 QEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566888999999999999999999999999998743
No 279
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=25.05 E-value=35 Score=41.33 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=17.3
Q ss_pred HHHhhcCCcceEeeccCCCCCCcccc
Q 003480 279 IPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 279 V~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
|..++.|.++.| ..+||+|||.+.
T Consensus 34 i~~il~g~dvlv--~apTGsGKTl~y 57 (607)
T PRK11057 34 IDAVLSGRDCLV--VMPTGGGKSLCY 57 (607)
T ss_pred HHHHHcCCCEEE--EcCCCchHHHHH
Confidence 345667887654 479999999753
No 280
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=24.80 E-value=26 Score=34.26 Aligned_cols=15 Identities=33% Similarity=0.450 Sum_probs=11.6
Q ss_pred EeeccCCCCCCcccc
Q 003480 290 CFAYGQTGSGKTFTM 304 (816)
Q Consensus 290 IfAYGqTGSGKTyTM 304 (816)
|+-.|.+|||||+..
T Consensus 1 i~l~G~~GsGKSTla 15 (163)
T TIGR01313 1 FVLMGVAGSGKSTIA 15 (163)
T ss_pred CEEECCCCCCHHHHH
Confidence 355799999998654
No 281
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=24.73 E-value=24 Score=43.67 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=13.7
Q ss_pred EeeccCCCCCCccccC
Q 003480 290 CFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 290 IfAYGqTGSGKTyTM~ 305 (816)
++..|.||||||.+|.
T Consensus 188 ~li~GttGSGKS~~i~ 203 (732)
T PRK13700 188 FCLHGTVGAGKSEVIR 203 (732)
T ss_pred eEEeCCCCCCHHHHHH
Confidence 5678999999999874
No 282
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=24.71 E-value=47 Score=41.64 Aligned_cols=35 Identities=20% Similarity=0.474 Sum_probs=25.2
Q ss_pred HHhhhhhhchHHHhh-cCCcceEeeccCCCCCCcccc
Q 003480 269 EVYRVTVEPIIPTIF-QRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 269 eVy~~~v~pLV~~vl-~G~NatIfAYGqTGSGKTyTM 304 (816)
.||.. +......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 Hifai-A~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 68 HIYSL-AQTAYRALLETRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred CHHHH-HHHHHHHHHHcCCCceEEEecCCCCCcHHHH
Confidence 35652 233333333 589999999999999999987
No 283
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=24.70 E-value=31 Score=34.43 Aligned_cols=15 Identities=33% Similarity=0.463 Sum_probs=13.1
Q ss_pred EeeccCCCCCCcccc
Q 003480 290 CFAYGQTGSGKTFTM 304 (816)
Q Consensus 290 IfAYGqTGSGKTyTM 304 (816)
|+.+|..|||||+..
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999765
No 284
>PRK02793 phi X174 lysis protein; Provisional
Probab=24.58 E-value=2.1e+02 Score=25.17 Aligned_cols=37 Identities=14% Similarity=0.297 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003480 771 IDNYVTQLSFVLSRKAASLVSLQARLARFQHRLKEQE 807 (816)
Q Consensus 771 iD~Yv~~L~~iL~~K~~~i~~Lq~~l~~F~~~L~eEE 807 (816)
.|+=|..|+.++.+...-|..|+.+|..+..+|++=+
T Consensus 20 Qe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 20 QEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566888999999999999999999999999998643
No 285
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=24.46 E-value=40 Score=38.02 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=20.1
Q ss_pred HHhhcCCcceEeeccCCCCCCcccc
Q 003480 280 PTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 280 ~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
+.+.+|.+..+|...+||||||...
T Consensus 7 ~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 7 EALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHcCCCCEEEEECCCCCCHHHHH
Confidence 3556777777888899999999864
No 286
>PRK08118 topology modulation protein; Reviewed
Probab=24.41 E-value=32 Score=34.52 Aligned_cols=15 Identities=33% Similarity=0.437 Sum_probs=12.6
Q ss_pred EeeccCCCCCCcccc
Q 003480 290 CFAYGQTGSGKTFTM 304 (816)
Q Consensus 290 IfAYGqTGSGKTyTM 304 (816)
|+-.|+.|||||+..
T Consensus 4 I~I~G~~GsGKSTla 18 (167)
T PRK08118 4 IILIGSGGSGKSTLA 18 (167)
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999999644
No 287
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=24.20 E-value=5.7e+02 Score=23.61 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=15.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhhcC
Q 003480 740 IAAHRKEIEDTMEIVREEMKLLAEVEQ 766 (816)
Q Consensus 740 I~~HR~~ie~~~elv~eEm~LL~~vd~ 766 (816)
+..=.++|+..++....+++||+....
T Consensus 5 f~~~~~~v~~el~~t~~d~~LLe~mN~ 31 (99)
T PF10046_consen 5 FSKVSKYVESELEATNEDYNLLENMNK 31 (99)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 444455666666666666666655443
No 288
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=24.19 E-value=42 Score=34.83 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=20.8
Q ss_pred chHHHhhc-CC--cceEeeccCCCCCCcccc
Q 003480 277 PIIPTIFQ-RT--KATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 277 pLV~~vl~-G~--NatIfAYGqTGSGKTyTM 304 (816)
+-++.++. |. ..++.-+|.+|+|||+..
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~ 37 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFC 37 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHH
Confidence 34566664 43 567888999999999876
No 289
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=24.11 E-value=20 Score=40.98 Aligned_cols=19 Identities=37% Similarity=0.550 Sum_probs=13.6
Q ss_pred cceEeeccCCCCCCccccC
Q 003480 287 KATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 287 NatIfAYGqTGSGKTyTM~ 305 (816)
+--++..|.||||||.+|.
T Consensus 15 ~~~~li~G~~GsGKT~~i~ 33 (386)
T PF10412_consen 15 NRHILIIGATGSGKTQAIR 33 (386)
T ss_dssp GG-EEEEE-TTSSHHHHHH
T ss_pred hCcEEEECCCCCCHHHHHH
Confidence 3456788999999998773
No 290
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=24.01 E-value=1.8e+02 Score=36.08 Aligned_cols=20 Identities=40% Similarity=0.599 Sum_probs=17.8
Q ss_pred CCcceEeeccCCCCCCcccc
Q 003480 285 RTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 285 G~NatIfAYGqTGSGKTyTM 304 (816)
+-|-+|+..|.||||||.-+
T Consensus 369 r~n~vvvivgETGSGKTTQl 388 (1042)
T KOG0924|consen 369 RENQVVVIVGETGSGKTTQL 388 (1042)
T ss_pred hhCcEEEEEecCCCCchhhh
Confidence 67888999999999999776
No 291
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=23.87 E-value=32 Score=41.16 Aligned_cols=45 Identities=22% Similarity=0.513 Sum_probs=29.7
Q ss_pred EEEeeeeeCCCCChHHHhhhhhhchHHHhhcCCcceEeeccCCCCCCcccc
Q 003480 254 EFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 254 ~F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
.|.||.+++....-..+.+ .+.. +...+..|+-+|.+||||++..
T Consensus 208 ~~~f~~iiG~S~~m~~~~~-----~i~~-~A~~~~pVLI~GE~GTGKe~lA 252 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRA-----LVRL-YARSDATVLILGESGTGKELVA 252 (526)
T ss_pred ccchhheeeCCHHHHHHHH-----HHHH-HhCCCCcEEEECCCCcCHHHHH
Confidence 4788888776432222222 2222 3457889999999999997655
No 292
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=23.81 E-value=41 Score=40.46 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=18.5
Q ss_pred hHHHhhcCCcceEeeccCCCCCCcccc
Q 003480 278 IIPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 278 LV~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
+|..+++|.|+ ++.-+||+|||.+.
T Consensus 21 ~i~~il~g~dv--lv~~PTG~GKTl~y 45 (591)
T TIGR01389 21 IISHVLDGRDV--LVVMPTGGGKSLCY 45 (591)
T ss_pred HHHHHHcCCCE--EEEcCCCccHhHHH
Confidence 34466788874 55569999999874
No 293
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.78 E-value=29 Score=38.60 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=16.7
Q ss_pred CcceEeeccCCCCCCccccC
Q 003480 286 TKATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 286 ~NatIfAYGqTGSGKTyTM~ 305 (816)
..-+|+-.|.||||||++|.
T Consensus 142 ~~~siii~G~t~sGKTt~ln 161 (312)
T COG0630 142 ARKSIIICGGTASGKTTLLN 161 (312)
T ss_pred cCCcEEEECCCCCCHHHHHH
Confidence 44567889999999999994
No 294
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=23.71 E-value=32 Score=43.78 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=18.2
Q ss_pred CcceEeeccCCCCCCccccCC
Q 003480 286 TKATCFAYGQTGSGKTFTMQP 306 (816)
Q Consensus 286 ~NatIfAYGqTGSGKTyTM~G 306 (816)
.|.-.+.+|.||||||++|..
T Consensus 474 ~n~n~~I~G~TGSGKS~l~~~ 494 (893)
T TIGR03744 474 KNAHLLILGPTGAGKSATLTN 494 (893)
T ss_pred CcccEEEECCCCCCHHHHHHH
Confidence 478889999999999999943
No 295
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=23.66 E-value=5.3e+02 Score=26.59 Aligned_cols=62 Identities=18% Similarity=0.302 Sum_probs=37.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003480 738 ALIAAHRKEIEDTMEIVREEMKLLAEVEQPGSLIDNYVTQLSFVLSRKAASLVSLQARLARFQHRLKEQEILSR 811 (816)
Q Consensus 738 ~lI~~HR~~ie~~~elv~eEm~LL~~vd~pg~diD~Yv~~L~~iL~~K~~~i~~Lq~~l~~F~~~L~eEE~ls~ 811 (816)
+++..|+..|++-++=|.+-.+.++ .+|..| ++|... .-|.++.++|..+..+++++|....
T Consensus 88 ~lLe~~~~~l~~ri~eLe~~l~~ka------d~vvsY-----qll~hr-~e~ee~~~~l~~le~~~~~~e~~~~ 149 (175)
T PRK13182 88 EQLEAQLNTITRRLDELERQLQQKA------DDVVSY-----QLLQHR-REMEEMLERLQKLEARLKKLEPIYI 149 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------hhhhhH-----HHHHhH-HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4555666665555544444333332 278888 444443 4467777888888888887776543
No 296
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=23.57 E-value=41 Score=42.00 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=26.0
Q ss_pred hhhchHHHhhcCCcceEeeccCCCCCCccccCCC
Q 003480 274 TVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPL 307 (816)
Q Consensus 274 ~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM~Gl 307 (816)
++..+++++-+|.+-.+++. .||||||+|.+-+
T Consensus 173 AI~rv~Eaf~~g~~raLlvM-ATGTGKTrTAiai 205 (875)
T COG4096 173 AIRRVIEAFSKGQNRALLVM-ATGTGKTRTAIAI 205 (875)
T ss_pred HHHHHHHHHhcCCceEEEEE-ecCCCcceeHHHH
Confidence 46778888889999865555 7999999998543
No 297
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=23.53 E-value=53 Score=40.43 Aligned_cols=21 Identities=29% Similarity=0.358 Sum_probs=19.7
Q ss_pred cCCcceEeeccCCCCCCcccc
Q 003480 284 QRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 284 ~G~NatIfAYGqTGSGKTyTM 304 (816)
.+.|-||+.-|.+|||||.|+
T Consensus 83 ~~~~QsIiisGESGsGKTet~ 103 (653)
T cd01379 83 YNQDQCIVISGESGSGKTESA 103 (653)
T ss_pred cCCCceEEEecCCCCCchHHH
Confidence 478999999999999999998
No 298
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=23.30 E-value=36 Score=40.10 Aligned_cols=23 Identities=43% Similarity=0.511 Sum_probs=17.1
Q ss_pred HHhhcCCcceEeeccCCCCCCcccc
Q 003480 280 PTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 280 ~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
..+.+|.+ ++|++|||||||+..
T Consensus 106 p~i~~Grd--l~acAqTGsGKT~aF 128 (482)
T KOG0335|consen 106 PIISGGRD--LMACAQTGSGKTAAF 128 (482)
T ss_pred ceeecCCc--eEEEccCCCcchHHH
Confidence 33445555 489999999999875
No 299
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=23.20 E-value=43 Score=35.60 Aligned_cols=30 Identities=20% Similarity=0.217 Sum_probs=23.2
Q ss_pred hhchHHHhhc--CCcceEeeccCCCCCCcccc
Q 003480 275 VEPIIPTIFQ--RTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 275 v~pLV~~vl~--G~NatIfAYGqTGSGKTyTM 304 (816)
+..+++.+.+ .....|.-+|..|+|||...
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA 36 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLA 36 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceee
Confidence 4455666665 56778899999999999876
No 300
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=23.00 E-value=58 Score=35.85 Aligned_cols=99 Identities=20% Similarity=0.236 Sum_probs=45.0
Q ss_pred CeEEEEEeCCCCchhhccCCCcEEEEeCCeEEEeCC-Ccccccc--c--ccceeEEEeeeeeCCCCChHHHhhhhhhchH
Q 003480 205 KIRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEP-KLKVDLT--A--YVEKHEFCFDAVLDERVTNDEVYRVTVEPII 279 (816)
Q Consensus 205 ~IrV~VRvRPl~~~E~~~~~~~iv~v~~~~v~v~~p-~~~~~~~--~--~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV 279 (816)
+-.+|+-+--+.+.+.- ...+.|.++.++-.+.+. ....+.+ . ..+...=++..|=+-+-.-+++-+.+|-|+-
T Consensus 114 Rqt~fLPvvGLvd~~~L-kPgDLVgvnKDsyliletLP~eyDsrVkaMevDekPtE~YsDiGGldkQIqELvEAiVLpmt 192 (424)
T KOG0652|consen 114 RQTYFLPVVGLVDPDKL-KPGDLVGVNKDSYLILETLPSEYDSRVKAMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMT 192 (424)
T ss_pred ceeeeeeeecccChhhC-CCcceeeecCCceeehhcCChhhhhhcceeeeccCCcccccccccHHHHHHHHHHHhccccc
Confidence 34566655555555532 345777777766333221 1111100 0 0001111122222222223445555555553
Q ss_pred H-Hhhc--CCc--ceEeeccCCCCCCcccc
Q 003480 280 P-TIFQ--RTK--ATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 280 ~-~vl~--G~N--atIfAYGqTGSGKTyTM 304 (816)
. .-|. |.. -.++.||+.|+|||...
T Consensus 193 h~ekF~~lgi~pPKGvLmYGPPGTGKTlmA 222 (424)
T KOG0652|consen 193 HKEKFENLGIRPPKGVLMYGPPGTGKTLMA 222 (424)
T ss_pred cHHHHHhcCCCCCCceEeeCCCCCcHHHHH
Confidence 2 1222 322 35899999999998643
No 301
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=22.94 E-value=36 Score=32.20 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=13.8
Q ss_pred ceEeeccCCCCCCcccc
Q 003480 288 ATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 288 atIfAYGqTGSGKTyTM 304 (816)
-.+.-.|++|||||.++
T Consensus 16 e~v~I~GpSGsGKSTLl 32 (107)
T cd00820 16 VGVLITGDSGIGKTELA 32 (107)
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 34566799999999887
No 302
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=22.81 E-value=41 Score=38.37 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=19.3
Q ss_pred cCCcceEeeccCCCCCCcccc
Q 003480 284 QRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 284 ~G~NatIfAYGqTGSGKTyTM 304 (816)
.|..-+|+..|+.|+|||..+
T Consensus 20 ~Gi~f~im~~G~sG~GKttfi 40 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFI 40 (373)
T ss_pred cCCceEEEEecCCCCchhHHH
Confidence 599999999999999999765
No 303
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=22.77 E-value=36 Score=29.10 Aligned_cols=16 Identities=31% Similarity=0.370 Sum_probs=12.7
Q ss_pred EeeccCCCCCCccccC
Q 003480 290 CFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 290 IfAYGqTGSGKTyTM~ 305 (816)
++.+|..|+|||.+..
T Consensus 2 ~~~~g~~G~Gktt~~~ 17 (99)
T cd01983 2 IVVTGKGGVGKTTLAA 17 (99)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4566888999998873
No 304
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=22.71 E-value=37 Score=37.00 Aligned_cols=18 Identities=33% Similarity=0.433 Sum_probs=14.2
Q ss_pred ceEeeccCCCCCCccccC
Q 003480 288 ATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 288 atIfAYGqTGSGKTyTM~ 305 (816)
.+|...|++|+|||.|..
T Consensus 73 ~vi~l~G~~G~GKTTt~a 90 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIA 90 (272)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 455555999999999983
No 305
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=22.71 E-value=45 Score=36.60 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=21.5
Q ss_pred hchHHHhhcCC---cceEeeccCCCCCCcccc
Q 003480 276 EPIIPTIFQRT---KATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 276 ~pLV~~vl~G~---NatIfAYGqTGSGKTyTM 304 (816)
.+-++.++.|. ...+.-||.+|||||..+
T Consensus 81 ~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~ 112 (310)
T TIGR02236 81 SKELDELLGGGIETQAITEVFGEFGSGKTQIC 112 (310)
T ss_pred CHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 34456677653 566789999999999776
No 306
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=22.57 E-value=46 Score=41.93 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=21.3
Q ss_pred HhhhhhhchHHHhhcCCcceEeeccCCCCCCcccc
Q 003480 270 VYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 270 Vy~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
||. ....+++.+-++ ..|+..|+||||||..+
T Consensus 6 i~~-~~~~i~~~l~~~--~~vvv~A~TGSGKTt~~ 37 (812)
T PRK11664 6 VAA-VLPELLTALKTA--PQVLLKAPTGAGKSTWL 37 (812)
T ss_pred HHH-HHHHHHHHHHhC--CCEEEEcCCCCCHHHHH
Confidence 443 344555555443 34778999999999776
No 307
>PRK06696 uridine kinase; Validated
Probab=22.50 E-value=53 Score=34.27 Aligned_cols=29 Identities=24% Similarity=0.175 Sum_probs=19.3
Q ss_pred hchHHHhh---cCCcceEeeccCCCCCCcccc
Q 003480 276 EPIIPTIF---QRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 276 ~pLV~~vl---~G~NatIfAYGqTGSGKTyTM 304 (816)
..|.+.++ .+....|.--|.+|||||+..
T Consensus 8 ~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 8 KELAEHILTLNLTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred HHHHHHHHHhCCCCceEEEEECCCCCCHHHHH
Confidence 34444443 344555667799999999876
No 308
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=22.46 E-value=37 Score=32.05 Aligned_cols=15 Identities=33% Similarity=0.384 Sum_probs=12.7
Q ss_pred EeeccCCCCCCcccc
Q 003480 290 CFAYGQTGSGKTFTM 304 (816)
Q Consensus 290 IfAYGqTGSGKTyTM 304 (816)
|+-.|++|||||...
T Consensus 2 I~i~G~~GsGKst~a 16 (147)
T cd02020 2 IAIDGPAGSGKSTVA 16 (147)
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999765
No 309
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=22.45 E-value=51 Score=34.78 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=20.7
Q ss_pred hchHHHhhcC---CcceEeeccCCCCCCccc
Q 003480 276 EPIIPTIFQR---TKATCFAYGQTGSGKTFT 303 (816)
Q Consensus 276 ~pLV~~vl~G---~NatIfAYGqTGSGKTyT 303 (816)
-+-++.++.| ...+++-+|.+|||||..
T Consensus 7 i~~LD~~l~GG~~~gs~~lI~G~pGsGKT~l 37 (237)
T TIGR03877 7 IPGMDEILHGGIPERNVVLLSGGPGTGKSIF 37 (237)
T ss_pred cHhHHHHhcCCCcCCeEEEEEcCCCCCHHHH
Confidence 3445676654 357788999999999853
No 310
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=22.20 E-value=36 Score=39.32 Aligned_cols=20 Identities=45% Similarity=0.463 Sum_probs=16.0
Q ss_pred ceEeeccCCCCCCccccCCC
Q 003480 288 ATCFAYGQTGSGKTFTMQPL 307 (816)
Q Consensus 288 atIfAYGqTGSGKTyTM~Gl 307 (816)
-.+.-.|++|+|||+|+..+
T Consensus 207 ~ii~lvGptGvGKTTt~akL 226 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKL 226 (407)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 45677899999999999533
No 311
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=22.18 E-value=34 Score=34.76 Aligned_cols=15 Identities=40% Similarity=0.357 Sum_probs=12.5
Q ss_pred EeeccCCCCCCcccc
Q 003480 290 CFAYGQTGSGKTFTM 304 (816)
Q Consensus 290 IfAYGqTGSGKTyTM 304 (816)
|.--|.+|||||+++
T Consensus 2 igi~G~~GsGKSTl~ 16 (198)
T cd02023 2 IGIAGGSGSGKTTVA 16 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 345699999999988
No 312
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=22.16 E-value=28 Score=36.61 Aligned_cols=12 Identities=33% Similarity=0.418 Sum_probs=10.9
Q ss_pred ccCCCCCCcccc
Q 003480 293 YGQTGSGKTFTM 304 (816)
Q Consensus 293 YGqTGSGKTyTM 304 (816)
-|.+|||||+++
T Consensus 5 ~G~sGSGKTTla 16 (220)
T cd02025 5 AGSVAVGKSTTA 16 (220)
T ss_pred eCCCCCCHHHHH
Confidence 499999999998
No 313
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=22.07 E-value=35 Score=38.49 Aligned_cols=29 Identities=14% Similarity=0.358 Sum_probs=22.4
Q ss_pred hchHHHhhcCCcceEeeccCCCCCCcccc
Q 003480 276 EPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 276 ~pLV~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
.-++-.+++..-+-|+-.|.+|+|||..+
T Consensus 14 ~al~~~~~~~~~g~vli~G~~G~gKttl~ 42 (337)
T TIGR02030 14 LALLLNVIDPKIGGVMVMGDRGTGKSTAV 42 (337)
T ss_pred HHHHHHhcCCCCCeEEEEcCCCCCHHHHH
Confidence 34555666666667889999999999887
No 314
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=22.06 E-value=3.6e+02 Score=26.55 Aligned_cols=59 Identities=19% Similarity=0.340 Sum_probs=47.3
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003480 726 DGNINALLEEEEALIAAHRKEIEDTMEIVREEMKLLAEVEQPGSLIDNYVTQLSFVLSRKAASLVSLQARLAR 798 (816)
Q Consensus 726 de~i~~ileeEE~lI~~HR~~ie~~~elv~eEm~LL~~vd~pg~diD~Yv~~L~~iL~~K~~~i~~Lq~~l~~ 798 (816)
+..|++||..=|.||.+- |++++.|++|-.+|-+.- .++..+.+.....|.-||.+|..
T Consensus 66 EKTi~til~LheKvl~aK----dETI~~lk~EN~fLKeAl----------~s~QE~y~ed~kTI~~L~~qL~~ 124 (126)
T PF13118_consen 66 EKTIGTILNLHEKVLDAK----DETIEALKNENRFLKEAL----------YSMQELYEEDRKTIELLREQLKI 124 (126)
T ss_pred hhHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHH----------HHHHHHHHhhHHHHHHHHHHHHh
Confidence 779999998888888764 789999999998887653 35666678888888888888764
No 315
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=22.01 E-value=34 Score=31.43 Aligned_cols=16 Identities=19% Similarity=0.310 Sum_probs=13.5
Q ss_pred eEeeccCCCCCCcccc
Q 003480 289 TCFAYGQTGSGKTFTM 304 (816)
Q Consensus 289 tIfAYGqTGSGKTyTM 304 (816)
-|.-+|.+|||||..+
T Consensus 3 ki~~~G~~~~GKstl~ 18 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLL 18 (161)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3677899999999876
No 316
>KOG3976 consensus Mitochondrial F1F0-ATP synthase, subunit b/ATP4 [Energy production and conversion]
Probab=21.85 E-value=5.4e+02 Score=28.02 Aligned_cols=71 Identities=23% Similarity=0.215 Sum_probs=45.9
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcC--CCchHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 003480 726 DGNINALLEEEEALIAAHRKEIEDTMEIVREEMKLLAEVEQ--PGSLIDNYVTQLSF-VLSRKAASLVSLQARLA 797 (816)
Q Consensus 726 de~i~~ileeEE~lI~~HR~~ie~~~elv~eEm~LL~~vd~--pg~diD~Yv~~L~~-iL~~K~~~i~~Lq~~l~ 797 (816)
|..+..++.+=++.+++|-++|.+..+..+..-+ |.++-+ ++..=++-.=+|+. -++++...-.++..+|+
T Consensus 124 dk~~~k~~~~~~~arq~~ik~i~d~id~~~sqq~-~~~~~~~lfd~~keni~l~lE~~yre~~~~v~~E~K~~lD 197 (247)
T KOG3976|consen 124 DKLIEKILSQLEEARQAHIKAISDAIDTEKSQQA-LASKTEYLFDVSKENIALQLEATYREQLVRVAKEVKRRLD 197 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHH-HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999998888765 332211 22222333233332 24555666666666665
No 317
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=21.84 E-value=52 Score=38.28 Aligned_cols=29 Identities=28% Similarity=0.406 Sum_probs=25.0
Q ss_pred hchHHHhhcCCcceEeeccCCCCCCcccc
Q 003480 276 EPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 276 ~pLV~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
..-++.+-+|....-|..|.-||||||.+
T Consensus 38 ~~~l~~v~~G~s~~kfi~G~YGsGKTf~l 66 (416)
T PF10923_consen 38 DRDLDRVADGGSSFKFIRGEYGSGKTFFL 66 (416)
T ss_pred HHHHHHHhCCCCeEEEEEeCCCCcHHHHH
Confidence 33457788999999999999999999988
No 318
>PRK14127 cell division protein GpsB; Provisional
Probab=21.78 E-value=2.8e+02 Score=26.58 Aligned_cols=42 Identities=17% Similarity=0.206 Sum_probs=30.2
Q ss_pred cCCCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003480 765 EQPGSL---IDNYVTQLSFVLSRKAASLVSLQARLARFQHRLKEQ 806 (816)
Q Consensus 765 d~pg~d---iD~Yv~~L~~iL~~K~~~i~~Lq~~l~~F~~~L~eE 806 (816)
..=||| ||+|...+-.=++.=.+-+..|++++.+.+..|.+-
T Consensus 19 ~~RGYd~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~ 63 (109)
T PRK14127 19 SMRGYDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDEL 63 (109)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777 888877777777777777777777777777777643
No 319
>CHL00195 ycf46 Ycf46; Provisional
Probab=21.66 E-value=37 Score=40.30 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=15.2
Q ss_pred ceEeeccCCCCCCcccc
Q 003480 288 ATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 288 atIfAYGqTGSGKTyTM 304 (816)
-.|+-||+.|+|||++.
T Consensus 260 kGILL~GPpGTGKTllA 276 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTA 276 (489)
T ss_pred ceEEEECCCCCcHHHHH
Confidence 46999999999999877
No 320
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=21.60 E-value=33 Score=34.71 Aligned_cols=26 Identities=35% Similarity=0.369 Sum_probs=22.1
Q ss_pred ceEeeccCCCCCCccccCCCchhHHH
Q 003480 288 ATCFAYGQTGSGKTFTMQPLPLRAAE 313 (816)
Q Consensus 288 atIfAYGqTGSGKTyTM~Gl~~ra~~ 313 (816)
+.|..|+.+|.|||+...|+..|++.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~ 28 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALG 28 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 56888999999999999888777763
No 321
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=21.47 E-value=38 Score=39.46 Aligned_cols=19 Identities=37% Similarity=0.370 Sum_probs=16.0
Q ss_pred cceEeeccCCCCCCccccC
Q 003480 287 KATCFAYGQTGSGKTFTMQ 305 (816)
Q Consensus 287 NatIfAYGqTGSGKTyTM~ 305 (816)
...|...|++|+|||.|+.
T Consensus 191 g~vi~lvGpnG~GKTTtla 209 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTA 209 (420)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3567788999999999994
No 322
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=21.45 E-value=45 Score=34.38 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=12.8
Q ss_pred EeeccCCCCCCcccc
Q 003480 290 CFAYGQTGSGKTFTM 304 (816)
Q Consensus 290 IfAYGqTGSGKTyTM 304 (816)
|+.+|..|||||+..
T Consensus 2 I~i~G~pGsGKsT~a 16 (210)
T TIGR01351 2 LVLLGPPGSGKGTQA 16 (210)
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999998754
No 323
>PRK04406 hypothetical protein; Provisional
Probab=21.44 E-value=2.6e+02 Score=24.86 Aligned_cols=36 Identities=14% Similarity=0.238 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003480 771 IDNYVTQLSFVLSRKAASLVSLQARLARFQHRLKEQ 806 (816)
Q Consensus 771 iD~Yv~~L~~iL~~K~~~i~~Lq~~l~~F~~~L~eE 806 (816)
.|+=|..|+.++.+...-|..|+.+|..+..+|++=
T Consensus 23 QE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 23 QEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456688899999999999999999999999998753
No 324
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=21.39 E-value=40 Score=33.40 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=13.0
Q ss_pred EeeccCCCCCCcccc
Q 003480 290 CFAYGQTGSGKTFTM 304 (816)
Q Consensus 290 IfAYGqTGSGKTyTM 304 (816)
++-+|.+|+|||..+
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677999999999766
No 325
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.38 E-value=52 Score=37.19 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=25.2
Q ss_pred EeeeeeCCCCChHHHhhhhhhchHHHhhcC-CcceEeeccCCCCCCcccc
Q 003480 256 CFDAVLDERVTNDEVYRVTVEPIIPTIFQR-TKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 256 ~FD~VFd~~asQeeVy~~~v~pLV~~vl~G-~NatIfAYGqTGSGKTyTM 304 (816)
+||.|. .|+.+-+ .+...+-.| ..-.++-||+.|+|||+++
T Consensus 14 ~~~~ii----Gq~~~~~----~l~~~~~~~~~~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 14 YFRDII----GQKHIVT----AISNGLSLGRIHHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred chhhcc----ChHHHHH----HHHHHHHcCCCCeEEEEecCCCCCHHHHH
Confidence 455554 3454443 233333344 3346789999999999887
No 326
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=21.38 E-value=35 Score=31.05 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=13.2
Q ss_pred EeeccCCCCCCcccc
Q 003480 290 CFAYGQTGSGKTFTM 304 (816)
Q Consensus 290 IfAYGqTGSGKTyTM 304 (816)
|+..|..|+|||..+
T Consensus 2 I~V~G~~g~GKTsLi 16 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLI 16 (119)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 677899999999876
No 327
>PRK06217 hypothetical protein; Validated
Probab=21.30 E-value=39 Score=34.05 Aligned_cols=15 Identities=33% Similarity=0.335 Sum_probs=13.0
Q ss_pred EeeccCCCCCCcccc
Q 003480 290 CFAYGQTGSGKTFTM 304 (816)
Q Consensus 290 IfAYGqTGSGKTyTM 304 (816)
|+-.|.+|||||+..
T Consensus 4 I~i~G~~GsGKSTla 18 (183)
T PRK06217 4 IHITGASGSGTTTLG 18 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 778899999999765
No 328
>PRK08233 hypothetical protein; Provisional
Probab=21.28 E-value=39 Score=33.29 Aligned_cols=15 Identities=27% Similarity=0.211 Sum_probs=12.3
Q ss_pred EeeccCCCCCCcccc
Q 003480 290 CFAYGQTGSGKTFTM 304 (816)
Q Consensus 290 IfAYGqTGSGKTyTM 304 (816)
|+--|.+|||||+..
T Consensus 6 I~I~G~~GsGKtTla 20 (182)
T PRK08233 6 ITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEECCCCCCHHHHH
Confidence 455699999999876
No 329
>PRK04296 thymidine kinase; Provisional
Probab=21.25 E-value=29 Score=35.47 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=15.7
Q ss_pred eEeeccCCCCCCccccCCCch
Q 003480 289 TCFAYGQTGSGKTFTMQPLPL 309 (816)
Q Consensus 289 tIfAYGqTGSGKTyTM~Gl~~ 309 (816)
.++-+|..|+|||..+.++..
T Consensus 4 i~litG~~GsGKTT~~l~~~~ 24 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAY 24 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHH
Confidence 467799999999977754433
No 330
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=21.24 E-value=39 Score=42.22 Aligned_cols=24 Identities=8% Similarity=0.098 Sum_probs=19.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHh
Q 003480 739 LIAAHRKEIEDTMEIVREEMKLLA 762 (816)
Q Consensus 739 lI~~HR~~ie~~~elv~eEm~LL~ 762 (816)
=--.||..||.--.+++.--..|.
T Consensus 673 ~W~~~~~~~~~~frll~~a~~~l~ 696 (767)
T PRK14723 673 RWLLWAEAADGAFRTLRHAWDALP 696 (767)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346899999999999998766665
No 331
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=21.20 E-value=6.2e+02 Score=23.50 Aligned_cols=51 Identities=18% Similarity=0.207 Sum_probs=29.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003480 741 AAHRKEIEDTMEIVREEMKLLAEVEQPGSLIDNYVTQLSFVLSRKAASLVSLQARLARFQ 800 (816)
Q Consensus 741 ~~HR~~ie~~~elv~eEm~LL~~vd~pg~diD~Yv~~L~~iL~~K~~~i~~Lq~~l~~F~ 800 (816)
..=...+++..+++.+|...|..-|. ..|+.++.+|...+.+++.--..++
T Consensus 11 ~~~~~~~~~L~~ll~~e~~~l~~~d~---------~~l~~~~~~k~~l~~~l~~le~~r~ 61 (143)
T PF05130_consen 11 EEQIELLQELLELLEEEREALISGDI---------DELEELVEEKQELLEELRELEKQRQ 61 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344557788999999888866533 2345555555555555544433333
No 332
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=21.14 E-value=53 Score=36.31 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=22.4
Q ss_pred ChHHHhhhhhhchHHHhhcCC-cceEeeccCCCCCCcccc
Q 003480 266 TNDEVYRVTVEPIIPTIFQRT-KATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 266 sQeeVy~~~v~pLV~~vl~G~-NatIfAYGqTGSGKTyTM 304 (816)
.|+.+.+ .+...+-.|. .-+++-||+.|+|||.+.
T Consensus 18 g~~~~~~----~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 18 GQEHIVQ----TLKNAIKNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred CcHHHHH----HHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 4555444 2333333454 346789999999999877
No 333
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=21.10 E-value=6.1e+02 Score=25.56 Aligned_cols=72 Identities=15% Similarity=0.246 Sum_probs=54.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH-hhhcCCCchHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003480 737 EALIAAHRKEIEDTMEIVREEMKLL-AEVEQPGSLIDNYVTQLSFV------LSRKAASLVSLQARLARFQHRLKEQEI 808 (816)
Q Consensus 737 E~lI~~HR~~ie~~~elv~eEm~LL-~~vd~pg~diD~Yv~~L~~i------L~~K~~~i~~Lq~~l~~F~~~L~eEE~ 808 (816)
+.|+..=+..++.+-.+--+-|..+ ..|+.-+-.+|..|.....+ |++.+..+..|..|++..|+.|..=|.
T Consensus 69 d~ll~~L~~~L~~mS~~Tv~~~~~y~~sv~~~cdsvD~sik~~y~liakceELn~~M~~v~~La~qIK~Ik~~lD~lE~ 147 (149)
T PF10157_consen 69 DSLLRSLRSSLHSMSAITVEHMETYKDSVDKLCDSVDASIKSMYTLIAKCEELNESMKPVYKLAQQIKDIKKLLDLLES 147 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555666666666666666666 56777777899998888866 568999999999999999999875443
No 334
>PRK04325 hypothetical protein; Provisional
Probab=21.07 E-value=2.7e+02 Score=24.62 Aligned_cols=37 Identities=19% Similarity=0.367 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003480 771 IDNYVTQLSFVLSRKAASLVSLQARLARFQHRLKEQE 807 (816)
Q Consensus 771 iD~Yv~~L~~iL~~K~~~i~~Lq~~l~~F~~~L~eEE 807 (816)
.|+=|..|+.++.+...-|..|+.+|.....+|++-+
T Consensus 21 QE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 21 QEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3556888999999999999999999999999997643
No 335
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=20.99 E-value=41 Score=42.10 Aligned_cols=46 Identities=24% Similarity=0.371 Sum_probs=27.3
Q ss_pred EeeeeeCCCCChHHHhhhhhhchHHHhhcCCcceEeeccCCCCCCccccCCCch
Q 003480 256 CFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPLPL 309 (816)
Q Consensus 256 ~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM~Gl~~ 309 (816)
.+|.+++.+.. +..+++-+.......++-||++|+|||+...++..
T Consensus 184 ~~~~liGR~~e--------i~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 184 GIDPLIGREKE--------LERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred CCCcCcCCCHH--------HHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHH
Confidence 45666665432 23333333333334445699999999999866543
No 336
>PRK14531 adenylate kinase; Provisional
Probab=20.94 E-value=41 Score=33.91 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=13.8
Q ss_pred eEeeccCCCCCCcccc
Q 003480 289 TCFAYGQTGSGKTFTM 304 (816)
Q Consensus 289 tIfAYGqTGSGKTyTM 304 (816)
-|+.+|..|||||+..
T Consensus 4 ~i~i~G~pGsGKsT~~ 19 (183)
T PRK14531 4 RLLFLGPPGAGKGTQA 19 (183)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999875
No 337
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.89 E-value=50 Score=38.98 Aligned_cols=41 Identities=27% Similarity=0.388 Sum_probs=24.9
Q ss_pred EeeeeeCCCCChHHHhhhhhhchHHHhhcCCc-ceEeeccCCCCCCcccc
Q 003480 256 CFDAVLDERVTNDEVYRVTVEPIIPTIFQRTK-ATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 256 ~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~N-atIfAYGqTGSGKTyTM 304 (816)
+||.|.++ +.+ +..|...+-.|.- ..++-||+.|+|||.+.
T Consensus 12 ~~~divGq----~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 12 TFSEVVGQ----DHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVA 53 (472)
T ss_pred CHHHccCc----HHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 45655553 444 2223333334433 35789999999999887
No 338
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=20.80 E-value=37 Score=34.86 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.5
Q ss_pred cceEeeccCCCCCCccccCCCchhHH
Q 003480 287 KATCFAYGQTGSGKTFTMQPLPLRAA 312 (816)
Q Consensus 287 NatIfAYGqTGSGKTyTM~Gl~~ra~ 312 (816)
.+.|..|+.+|.|||+...|+..|++
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~ 30 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRAL 30 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHH
Confidence 46788899999999999998887776
No 339
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=20.79 E-value=35 Score=34.71 Aligned_cols=15 Identities=40% Similarity=0.346 Sum_probs=12.6
Q ss_pred EeeccCCCCCCcccc
Q 003480 290 CFAYGQTGSGKTFTM 304 (816)
Q Consensus 290 IfAYGqTGSGKTyTM 304 (816)
|.-.|.+|||||++.
T Consensus 2 IgI~G~sgSGKTTla 16 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLA 16 (194)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999876
No 340
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.71 E-value=57 Score=36.60 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=19.2
Q ss_pred hHHHhhcCC-cceEeeccCCCCCCcccc
Q 003480 278 IIPTIFQRT-KATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 278 LV~~vl~G~-NatIfAYGqTGSGKTyTM 304 (816)
+...+-.|. .-.++-||+.|+|||++.
T Consensus 29 l~~~i~~~~~~~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 29 LLNAIENNHLAQALLFCGPRGVGKTTCA 56 (367)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 334444454 346788999999999887
No 341
>PRK10865 protein disaggregation chaperone; Provisional
Probab=20.49 E-value=58 Score=41.35 Aligned_cols=38 Identities=24% Similarity=0.216 Sum_probs=0.0
Q ss_pred ChHHHhhhhhhchHHHhhcCCc------ceEeeccCCCCCCcccc
Q 003480 266 TNDEVYRVTVEPIIPTIFQRTK------ATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 266 sQeeVy~~~v~pLV~~vl~G~N------atIfAYGqTGSGKTyTM 304 (816)
.|..+-. .+...|..+..|.. ++++-+|++|+|||++.
T Consensus 572 GQ~~ai~-~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 572 GQNEAVE-AVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615 (857)
T ss_pred CCHHHHH-HHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHH
No 342
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=20.28 E-value=39 Score=35.06 Aligned_cols=16 Identities=38% Similarity=0.472 Sum_probs=14.1
Q ss_pred eEeeccCCCCCCcccc
Q 003480 289 TCFAYGQTGSGKTFTM 304 (816)
Q Consensus 289 tIfAYGqTGSGKTyTM 304 (816)
.|+-.|.||||||.+.
T Consensus 2 ~IlllG~tGsGKSs~~ 17 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLG 17 (212)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5888999999999775
No 343
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=20.27 E-value=45 Score=31.96 Aligned_cols=21 Identities=19% Similarity=0.515 Sum_probs=17.0
Q ss_pred cCCcceEeeccCCCCCCcccc
Q 003480 284 QRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 284 ~G~NatIfAYGqTGSGKTyTM 304 (816)
...+..|+-+|..||||++..
T Consensus 18 a~~~~pvli~GE~GtGK~~~A 38 (138)
T PF14532_consen 18 AKSSSPVLITGEPGTGKSLLA 38 (138)
T ss_dssp HCSSS-EEEECCTTSSHHHHH
T ss_pred hCCCCcEEEEcCCCCCHHHHH
Confidence 367778899999999998876
No 344
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=20.08 E-value=62 Score=38.73 Aligned_cols=42 Identities=19% Similarity=0.375 Sum_probs=27.3
Q ss_pred EEeeeeeCCCCChHHHhhhhhhchHHHhhcCCcceEeeccCCCCCCcccc
Q 003480 255 FCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (816)
Q Consensus 255 F~FD~VFd~~asQeeVy~~~v~pLV~~vl~G~NatIfAYGqTGSGKTyTM 304 (816)
-+|+.+++.+. . ++.+...++......|+-||++|+|||+..
T Consensus 62 ~~f~~iiGqs~----~----i~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 62 KSFDEIIGQEE----G----IKALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred CCHHHeeCcHH----H----HHHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 35677766542 2 223333345556677888999999999865
Done!