Query 003481
Match_columns 816
No_of_seqs 578 out of 3397
Neff 8.0
Searched_HMMs 29240
Date Tue Mar 26 18:02:25 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003481.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1530-1533//hhsearch_pdb/003481hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 1.0 1 1 408.7 22.1 255 470-740 41-319 (329)
2 4asz_A BDNF/NT-3 growth factor 1.0 1 1 408.2 17.2 255 470-740 13-289 (299)
3 4gt4_A Tyrosine-protein kinase 1.0 1 1 404.4 20.1 252 471-738 27-304 (308)
4 3omv_A RAF proto-oncogene seri 1.0 1 1 403.7 24.6 256 470-740 36-300 (307)
5 4b9d_A Serine/threonine-protei 1.0 1 1 400.1 12.1 249 470-736 24-280 (350)
6 4fie_A Serine/threonine-protei 1.0 1 1 396.0 20.9 245 470-733 151-401 (423)
7 4fih_A Serine/threonine-protei 1.0 1 1 395.4 18.8 245 470-733 74-324 (346)
8 4ase_A Vascular endothelial gr 1.0 1 1 393.6 16.6 261 463-739 57-346 (353)
9 4g3f_A NF-kappa-beta-inducing 1.0 1 1 387.6 19.4 251 469-738 57-314 (336)
10 3hmm_A TGF-beta receptor type- 1.0 1 1 387.4 17.8 259 471-741 4-298 (303)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=408.68 Aligned_cols=255 Identities=26% Similarity=0.432 Sum_probs=213.7
Q ss_pred CCCCCCCEEEEECCEEEEEEEEC-------CEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCC--CCCC
Q ss_conf 39775642442065699999885-------90999999404883137999999999743899840037210047--7411
Q 003481 470 CNFSESFKVGQGGFGCVYKGEML-------GRTVAIKMLYSHNMQGQLEFQQEVRVLSKLQHPHLVTLLGACPE--AWSL 540 (816)
Q Consensus 470 ~~f~~~~~LG~G~~g~Vy~g~~~-------g~~vAiK~l~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~--~~~l 540 (816)
.+|...++||+|+||.||+|.+. +..||||+++.........|.+|+.+|++++|||||+++|+|.+ ..+|
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 99288779714778489989987866577896999999775797999999999999985899899969899998998999
Q ss_pred EEECCCCCCHHHHHHHCCC------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCE
Q ss_conf 2421699961356410299------------9989999999999999999999851699944607788995675479990
Q 003481 541 VYEYLPNGSLQDRLFRKSN------------VSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSS 608 (816)
Q Consensus 541 V~E~~~~gsL~~~L~~~~~------------~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~iiHrDIkp~NILld~~~~~ 608 (816)
|||||++|+|.++|..... ..+++|.+++.|+.|+|.||.|||+.+ |+||||||+||||+.++.+
T Consensus 121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLKp~NILl~~~~~~ 197 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH---FVHRDLATRNCLVGQGLVV 197 (329)
T ss_dssp EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTTEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC---EECCCCCHHHEEECCCCCE
T ss_conf 9982799939999986075410012211245788999999999999999999984088---4226666764898899968
Q ss_pred EEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-CCCCCCCHHH--HHHHH
Q ss_conf 68202651101478876777555689998989889643335988961037679999999992-9999998278--99986
Q 003481 609 KICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLT-GRLPVGLAGE--VRRAV 685 (816)
Q Consensus 609 KL~DFGla~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~ksDVwSlGvil~ellt-G~~P~~~~~~--~~~~~ 685 (816)
||+|||+|+........ .......||+.|||||++.+..|+.++|||||||+||||+| |+.||..... +...+
T Consensus 198 Ki~DFGla~~~~~~~~~----~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i 273 (329)
T 4aoj_A 198 KIGDFGMSRDIYSTDYY----RVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCI 273 (329)
T ss_dssp EECCCC--------------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHHHHHH
T ss_pred EECCCCCCEECCCCCCC----EECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 97666033365678753----00476455656658265447999966300105789999982899999998999999999
Q ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 3096323357889999989999999999995310889999974899999998310
Q 003481 686 SCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHV 740 (816)
Q Consensus 686 ~~~~~~~~~d~~~~~~~~~~~~~l~~Li~~Cl~~dp~~RPs~~~~l~~~L~~l~~ 740 (816)
..+.. ...|...+..+.+|+.+||+.||.+||++. .+...|+.+..
T Consensus 274 ~~g~~--------~~~p~~~~~~~~~li~~cl~~dP~~RPs~~-ei~~~L~~l~~ 319 (329)
T 4aoj_A 274 TQGRE--------LERPRACPPEVYAIMRGCWQREPQQRHSIK-DVHARLQALAQ 319 (329)
T ss_dssp HHTCC--------CCCCTTCCHHHHHHHHHHCCSSTTTSCCHH-HHHHHHHHHHH
T ss_pred HCCCC--------CCCCCCCCHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHHHH
T ss_conf 80898--------998644639999999997475965792999-99999998745
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=408.20 Aligned_cols=255 Identities=28% Similarity=0.449 Sum_probs=213.8
Q ss_pred CCCCCCCEEEEECCEEEEEEEEC-------CEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCC--CCCC
Q ss_conf 39775642442065699999885-------90999999404883137999999999743899840037210047--7411
Q 003481 470 CNFSESFKVGQGGFGCVYKGEML-------GRTVAIKMLYSHNMQGQLEFQQEVRVLSKLQHPHLVTLLGACPE--AWSL 540 (816)
Q Consensus 470 ~~f~~~~~LG~G~~g~Vy~g~~~-------g~~vAiK~l~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~--~~~l 540 (816)
++|...++||+|+||.||+|.+. +..||||+++.........|.+|+.+|++++|||||+++|+|.+ ..+|
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 89298249820788299999987766677887999999677785899999999999985899888628799956998999
Q ss_pred EEECCCCCCHHHHHHHCC----------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEE
Q ss_conf 242169996135641029----------9998999999999999999999985169994460778899567547999068
Q 003481 541 VYEYLPNGSLQDRLFRKS----------NVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKI 610 (816)
Q Consensus 541 V~E~~~~gsL~~~L~~~~----------~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~iiHrDIkp~NILld~~~~~KL 610 (816)
|||||++|+|.++|.... ....++|..++.|+.|+|.||.|||+.+ |+||||||+||||+.++.+||
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDlKp~NILl~~~~~~Ki 169 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQH---FVHRDLATRNCLVGENLLVKI 169 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEE
T ss_conf 99858999689999860864211123577788999999999999999999997599---046765776389879986898
Q ss_pred EECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-CCCCCCCHH--HHHHHHHC
Q ss_conf 202651101478876777555689998989889643335988961037679999999992-999999827--89998630
Q 003481 611 CDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLT-GRLPVGLAG--EVRRAVSC 687 (816)
Q Consensus 611 ~DFGla~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~ksDVwSlGvil~ellt-G~~P~~~~~--~~~~~~~~ 687 (816)
+|||+|+........ .......||+.|||||++.+..|+.++|||||||+||||+| |+.||.... .+...+..
T Consensus 170 ~DFGla~~~~~~~~~----~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~ 245 (299)
T 4asz_A 170 GDFGMSRDVYSTDYY----RVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQ 245 (299)
T ss_dssp CCCSCHHHHTGGGCE----EETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHH
T ss_pred CCCCCCEECCCCCCE----EECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHC
T ss_conf 873001006788741----6647513470103889870799970366778899999998089999999899999999980
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 96323357889999989999999999995310889999974899999998310
Q 003481 688 GKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHV 740 (816)
Q Consensus 688 ~~~~~~~d~~~~~~~~~~~~~l~~Li~~Cl~~dp~~RPs~~~~l~~~L~~l~~ 740 (816)
+... ..|...+..+.+|+.+||+.||.+||++. .+...|+.+..
T Consensus 246 ~~~~--------~~p~~~~~~~~~li~~cl~~dP~~RPs~~-~i~~~L~~~~~ 289 (299)
T 4asz_A 246 GRVL--------QRPRTCPQEVYELMLGCWQREPHMRKNIK-GIHTLLQNLAK 289 (299)
T ss_dssp TCCC--------CCCTTCCHHHHHHHHHHTCSSGGGSCCHH-HHHHHHHHHHH
T ss_pred CCCC--------CCCCCCHHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHHHH
T ss_conf 8988--------99741439999999997687966892999-99999987776
No 3
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=404.40 Aligned_cols=252 Identities=27% Similarity=0.435 Sum_probs=207.6
Q ss_pred CCCCCCEEEEECCEEEEEEEEC-------CEEEEEEEECCCCC-CCHHHHHHHHHHHHCCCCCCEEEEECCCCC--CCCC
Q ss_conf 9775642442065699999885-------90999999404883-137999999999743899840037210047--7411
Q 003481 471 NFSESFKVGQGGFGCVYKGEML-------GRTVAIKMLYSHNM-QGQLEFQQEVRVLSKLQHPHLVTLLGACPE--AWSL 540 (816)
Q Consensus 471 ~f~~~~~LG~G~~g~Vy~g~~~-------g~~vAiK~l~~~~~-~~~~~~~~E~~il~~l~HpnIv~l~g~~~~--~~~l 540 (816)
++...++||+|+||.||+|.+. +..||||+++.... .....|.+|+.++++++|||||+++|+|.+ ..+|
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~l 106 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSM 106 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred HCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEE
T ss_conf 88586691358884899999857765888869999998801496899999999999985899898773649988998899
Q ss_pred EEECCCCCCHHHHHHHCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCC
Q ss_conf 2421699961356410299-------------998999999999999999999985169994460778899567547999
Q 003481 541 VYEYLPNGSLQDRLFRKSN-------------VSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELS 607 (816)
Q Consensus 541 V~E~~~~gsL~~~L~~~~~-------------~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~iiHrDIkp~NILld~~~~ 607 (816)
|||||++|+|.++|..... ...++|..+++|+.|||.||.|||+.+ ||||||||+||||+.++.
T Consensus 107 V~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLK~~NILl~~~~~ 183 (308)
T 4gt4_A 107 IFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH---VVHKDLATRNVLVYDKLN 183 (308)
T ss_dssp EEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGC
T ss_pred EEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCEEECCCCC
T ss_conf 99818999499999862765433332211112468999999999999999999998689---977873623068879997
Q ss_pred EEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-CCCCCCCHH--HHHHH
Q ss_conf 068202651101478876777555689998989889643335988961037679999999992-999999827--89998
Q 003481 608 SKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLT-GRLPVGLAG--EVRRA 684 (816)
Q Consensus 608 ~KL~DFGla~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~ksDVwSlGvil~ellt-G~~P~~~~~--~~~~~ 684 (816)
+||+|||+|+........ .......||+.|||||++.++.|+.++|||||||+||||+| |+.||.... .+...
T Consensus 184 ~Ki~DFGlar~~~~~~~~----~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~~~~~ 259 (308)
T 4gt4_A 184 VKISDLGLFREVYAADYY----KLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEM 259 (308)
T ss_dssp EEECCSCCBCGGGGGGCB----CSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHH
T ss_pred EEECCCCCCEECCCCCCE----EEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 898876020233677740----4734512577656989982799996300015799999999689999999899999999
Q ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 630963233578899999899999999999953108899999748999999983
Q 003481 685 VSCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQL 738 (816)
Q Consensus 685 ~~~~~~~~~~d~~~~~~~~~~~~~l~~Li~~Cl~~dp~~RPs~~~~l~~~L~~l 738 (816)
+..+... ..|...+..+.+|+.+||+.||.+||++. .++..|+.+
T Consensus 260 i~~~~~~--------~~p~~~~~~~~~li~~C~~~dP~~RPs~~-ei~~~L~a~ 304 (308)
T 4gt4_A 260 IRNRQVL--------PCPDDCPAWVYALMIECWNEFPSRRPRFK-DIHSRLRAW 304 (308)
T ss_dssp HHTTCCC--------CCCTTCCHHHHHHHHHHTCSSGGGSCCHH-HHHHHHHTS
T ss_pred HHCCCCC--------CCCCCCHHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHC
T ss_conf 9819989--------99620369999999997587965792999-999999853
No 4
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=403.67 Aligned_cols=256 Identities=28% Similarity=0.455 Sum_probs=209.1
Q ss_pred CCCCCCCEEEEECCEEEEEEEECCEEEEEEEECCCCC--CCHHHHHHHHHHHHCCCCCCEEEEECCCCC-CCCCEEECCC
Q ss_conf 3977564244206569999988590999999404883--137999999999743899840037210047-7411242169
Q 003481 470 CNFSESFKVGQGGFGCVYKGEMLGRTVAIKMLYSHNM--QGQLEFQQEVRVLSKLQHPHLVTLLGACPE-AWSLVYEYLP 546 (816)
Q Consensus 470 ~~f~~~~~LG~G~~g~Vy~g~~~g~~vAiK~l~~~~~--~~~~~~~~E~~il~~l~HpnIv~l~g~~~~-~~~lV~E~~~ 546 (816)
++|...++||+|+||.||+|++.+ .||||+++.... .....|.+|+.++++++|||||+++|+|.+ ..+||||||+
T Consensus 36 ~~l~l~~~iG~G~fG~Vy~~~~~~-~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~iVmEy~~ 114 (307)
T 3omv_A 36 SEVMLSTRIGSGSFGTVYKGKWHG-DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQWCE 114 (307)
T ss_dssp TSCCEEEECCCCSSSEEEEEESSS-EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEECCS
T ss_pred HHEEEEEEEEECCCCEEEEEEECC-CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEEEEEECCC
T ss_conf 994984498208886899999899-6899999726899999999999999998589988746999997895899997489
Q ss_pred CCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEECCCCEECCCCCCCC
Q ss_conf 99613564102999989999999999999999999851699944607788995675479990682026511014788767
Q 003481 547 NGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYL 626 (816)
Q Consensus 547 ~gsL~~~L~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~iiHrDIkp~NILld~~~~~KL~DFGla~~~~~~~~~~ 626 (816)
+|+|.++|.... .+++|..++.|+.|+|.||.|||+.+ ||||||||+||||+.++.+||+|||+|+........
T Consensus 115 gGsL~~~l~~~~--~~l~~~~~~~i~~qia~gL~yLH~~~---IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~- 188 (307)
T 3omv_A 115 GSSLYKHLHVQE--TKFQMFQLIDIARQTAQGMDYLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGS- 188 (307)
T ss_dssp SCBHHHHHHTSC--CCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCCSSSEEEETTEEEEECCCSSCBC--------
T ss_pred CCCHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEEECCCCEECCCCCCC-
T ss_conf 987889875248--99999999999999999999997799---527855789978889990899441575424667764-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC---CCCCCCHHHHHHHHHHHHHHHCCCCCCCHH---HHHHHHHCCCCCCCCCCCCCC
Q ss_conf 77555689998989889643335---988961037679999999992999999827---899986309632335788999
Q 003481 627 PSFHRSTAPKGSFPYADPEYHRT---GVLTPKSDSYSFGLIILQLLTGRLPVGLAG---EVRRAVSCGKLSSILDPLAGD 700 (816)
Q Consensus 627 ~~~~~~~~~~gt~~Y~aPE~~~~---~~~s~ksDVwSlGvil~elltG~~P~~~~~---~~~~~~~~~~~~~~~d~~~~~ 700 (816)
......+||+.|||||++.+ +.|+.++|||||||+||||+||+.||.... .+...+..+.. .|....
T Consensus 189 ---~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~~~~~~----~p~~~~ 261 (307)
T 3omv_A 189 ---QQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYA----SPDLSK 261 (307)
T ss_dssp --------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHTTCC----CCCSTT
T ss_pred ---EEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCC----CCCCCC
T ss_conf ---0315644687724987861468998786877572899999999788998999969999999965888----887200
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9989999999999995310889999974899999998310
Q 003481 701 WPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHV 740 (816)
Q Consensus 701 ~~~~~~~~l~~Li~~Cl~~dp~~RPs~~~~l~~~L~~l~~ 740 (816)
.+..++..+.+|+.+||+.+|.+||++. .++..|+.+..
T Consensus 262 ~~~~~~~~l~~li~~cl~~dP~~RPs~~-ei~~~Le~l~~ 300 (307)
T 3omv_A 262 LYKNCPKAMKRLVADCVKKVKEERPLFP-QILSSIELLQH 300 (307)
T ss_dssp SCTTSCHHHHHHHHHHTCSSSTTSCCHH-HHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHHHC
T ss_conf 3544569999999997577976890989-99999999745
No 5
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=400.09 Aligned_cols=249 Identities=24% Similarity=0.334 Sum_probs=207.6
Q ss_pred CCCCCCCEEEEECCEEEEEEEEC--CEEEEEEEECCCCCC--CHHHHHHHHHHHHCCCCCCEEEEECCCCC--CCCCEEE
Q ss_conf 39775642442065699999885--909999994048831--37999999999743899840037210047--7411242
Q 003481 470 CNFSESFKVGQGGFGCVYKGEML--GRTVAIKMLYSHNMQ--GQLEFQQEVRVLSKLQHPHLVTLLGACPE--AWSLVYE 543 (816)
Q Consensus 470 ~~f~~~~~LG~G~~g~Vy~g~~~--g~~vAiK~l~~~~~~--~~~~~~~E~~il~~l~HpnIv~l~g~~~~--~~~lV~E 543 (816)
++|...+.||+|+||.||+++.. |..||||++...... ....|.+|+.+|.+++|||||++++++.+ ..|||||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 25588479702779399999988999899999986587897999999999999987799898919999998999999994
Q ss_pred CCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEECCCCEECCCCC
Q ss_conf 16999613564102999989999999999999999999851699944607788995675479990682026511014788
Q 003481 544 YLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDT 623 (816)
Q Consensus 544 ~~~~gsL~~~L~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~iiHrDIkp~NILld~~~~~KL~DFGla~~~~~~~ 623 (816)
||++|+|.++|..... ..+++..++.|+.||+.||.|||+.+ |+||||||+||||+.++.+||+|||+|+.+....
T Consensus 104 y~~gg~L~~~i~~~~~-~~~~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~ 179 (350)
T 4b9d_A 104 YCEGGDLFKRINAQKG-VLFQEDQILDWFVQICLALKHVHDRK---ILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTV 179 (350)
T ss_dssp CCTTCBHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHHHHHTT---CEETTCCGGGEEECTTCCEEECSTTEESCCCHHH
T ss_pred CCCCCCHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHCC---EEECCCCHHHEEECCCCCEEECCCCCCEEECCCC
T ss_conf 8899839999997389-99978999999999999999999899---1513597899798789998976465214406885
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHH--HHHHHHCCCCCCCCCCCCCCC
Q ss_conf 767775556899989898896433359889610376799999999929999998278--999863096323357889999
Q 003481 624 LYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGE--VRRAVSCGKLSSILDPLAGDW 701 (816)
Q Consensus 624 ~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~ksDVwSlGvil~elltG~~P~~~~~~--~~~~~~~~~~~~~~d~~~~~~ 701 (816)
. .....+||+.|||||++.+..|+.++|||||||+||||+||+.||..... +...+..+.+. ..
T Consensus 180 ~------~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~--------~~ 245 (350)
T 4b9d_A 180 E------LARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIISGSFP--------PV 245 (350)
T ss_dssp H------HHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCC--------CC
T ss_pred C------CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCC--------CC
T ss_conf 4------101457883603999987999895999999999999999787998996999999999808999--------99
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 98999999999999531088999997489999999
Q 003481 702 PTFVARRLVDLGLQCCELYGRERPDITPSLVKELE 736 (816)
Q Consensus 702 ~~~~~~~l~~Li~~Cl~~dp~~RPs~~~~l~~~L~ 736 (816)
+...+..+.+|+.+||+.||.+||++.+.+.+.+-
T Consensus 246 ~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~hp~~ 280 (350)
T 4b9d_A 246 SLHYSYDLRSLVSQLFKRNPRDRPSVNSILEKGFI 280 (350)
T ss_dssp CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSHHH
T ss_pred CCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCHHH
T ss_conf 75579999999999855896679089999639976
No 6
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=395.98 Aligned_cols=245 Identities=21% Similarity=0.319 Sum_probs=205.7
Q ss_pred CCCCCCCEEEEECCEEEEEEEEC--CEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCC--CCCCCEEECC
Q ss_conf 39775642442065699999885--9099999940488313799999999974389984003721004--7741124216
Q 003481 470 CNFSESFKVGQGGFGCVYKGEML--GRTVAIKMLYSHNMQGQLEFQQEVRVLSKLQHPHLVTLLGACP--EAWSLVYEYL 545 (816)
Q Consensus 470 ~~f~~~~~LG~G~~g~Vy~g~~~--g~~vAiK~l~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~--~~~~lV~E~~ 545 (816)
..|...++||+|+||.||+|+.. |..||||++..........+.+|+.+|.+++|||||++++++. +..|||||||
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~ 230 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 230 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred HHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 84386169624818489999999999899999986255468999999999998579989871689999899999999698
Q ss_pred CCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEECCCCEECCCCCCC
Q ss_conf 99961356410299998999999999999999999985169994460778899567547999068202651101478876
Q 003481 546 PNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLY 625 (816)
Q Consensus 546 ~~gsL~~~L~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~iiHrDIkp~NILld~~~~~KL~DFGla~~~~~~~~~ 625 (816)
++|+|.+++... .+++..+..|+.||+.||.|||+.+ ||||||||+||||+.++.+||+|||+|+.+.....
T Consensus 231 ~gG~L~~~i~~~----~l~e~~~~~~~~qil~aL~ylH~~~---IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~- 302 (423)
T 4fie_A 231 EGGALTDIVTHT----RMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP- 302 (423)
T ss_dssp TTEEHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSTTTEEECTTCCEEECCCTTCEECCSSCC-
T ss_pred CCCCHHHHHHCC----CCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCCHHHEEECCCCCEEEECCCCCEECCCCCC-
T ss_conf 998289887616----9899999999999999999999889---04465787778985899989803726547778876-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHH--HHHHHCCCCCCCCCCCCCCCCH
Q ss_conf 77755568999898988964333598896103767999999999299999982789--9986309632335788999998
Q 003481 626 LPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEV--RRAVSCGKLSSILDPLAGDWPT 703 (816)
Q Consensus 626 ~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~ksDVwSlGvil~elltG~~P~~~~~~~--~~~~~~~~~~~~~d~~~~~~~~ 703 (816)
.....+||+.|||||++.+..|+.++|||||||++|||++|++||...... ...+..+. .+.... +.
T Consensus 303 -----~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~-----~~~~~~-~~ 371 (423)
T 4fie_A 303 -----RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNL-----PPRLKN-LH 371 (423)
T ss_dssp -----CBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSC-----CCCCSC-TT
T ss_pred -----CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCC-----CCCCCC-CC
T ss_conf -----4346664747279999779999968999999999999997879989869999999997279-----988765-01
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 999999999999531088999997489999
Q 003481 704 FVARRLVDLGLQCCELYGRERPDITPSLVK 733 (816)
Q Consensus 704 ~~~~~l~~Li~~Cl~~dp~~RPs~~~~l~~ 733 (816)
.++..+.+|+.+||..||.+||++.+.+.+
T Consensus 372 ~~s~~~~dli~~~L~~dP~~R~ta~ell~H 401 (423)
T 4fie_A 372 KVSPSLKGFLDRLLVRDPAQRATAAELLKH 401 (423)
T ss_dssp SSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred CCCHHHHHHHHHHCCCCHHHCCCHHHHHCC
T ss_conf 299999999999867895689099999609
No 7
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=395.35 Aligned_cols=245 Identities=21% Similarity=0.307 Sum_probs=205.5
Q ss_pred CCCCCCCEEEEECCEEEEEEEEC--CEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCC--CCCCEEECC
Q ss_conf 39775642442065699999885--90999999404883137999999999743899840037210047--741124216
Q 003481 470 CNFSESFKVGQGGFGCVYKGEML--GRTVAIKMLYSHNMQGQLEFQQEVRVLSKLQHPHLVTLLGACPE--AWSLVYEYL 545 (816)
Q Consensus 470 ~~f~~~~~LG~G~~g~Vy~g~~~--g~~vAiK~l~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~--~~~lV~E~~ 545 (816)
..|....+||+|+||.||+|+.. |..||||++..........+.+|+.+|.+++|||||++++++.+ ..|||||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 75387079602728299999998999899999985276568999999999998679989991999999899999999698
Q ss_pred CCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEECCCCEECCCCCCC
Q ss_conf 99961356410299998999999999999999999985169994460778899567547999068202651101478876
Q 003481 546 PNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLY 625 (816)
Q Consensus 546 ~~gsL~~~L~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~iiHrDIkp~NILld~~~~~KL~DFGla~~~~~~~~~ 625 (816)
++|+|.+++... .+++..+..|+.|++.||.|||+.+ |+||||||+||||+.++.+||+|||+|+.+.....
T Consensus 154 ~gg~L~~~l~~~----~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~- 225 (346)
T 4fih_A 154 EGGALTDIVTHT----RMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP- 225 (346)
T ss_dssp TTEEHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSSSC-
T ss_pred CCCCHHHHHHCC----CCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEECCCCCEECCCCCC-
T ss_conf 998089998718----9899999999999999999999888---35562788997887999889902757536678877-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHH--HHHHHCCCCCCCCCCCCCCCCH
Q ss_conf 77755568999898988964333598896103767999999999299999982789--9986309632335788999998
Q 003481 626 LPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEV--RRAVSCGKLSSILDPLAGDWPT 703 (816)
Q Consensus 626 ~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~ksDVwSlGvil~elltG~~P~~~~~~~--~~~~~~~~~~~~~d~~~~~~~~ 703 (816)
.....+||+.|||||++.+..|+.++|||||||+||||+||++||...... ...+..+. .+.. ..+.
T Consensus 226 -----~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~-----~~~~-~~~~ 294 (346)
T 4fih_A 226 -----RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNL-----PPRL-KNLH 294 (346)
T ss_dssp -----CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSS-----CCCC-SCGG
T ss_pred -----CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCC-----CCCC-CCCC
T ss_conf -----5346562758279999779999968999999999999997879989859999999997179-----9988-7502
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 999999999999531088999997489999
Q 003481 704 FVARRLVDLGLQCCELYGRERPDITPSLVK 733 (816)
Q Consensus 704 ~~~~~l~~Li~~Cl~~dp~~RPs~~~~l~~ 733 (816)
.++..+.+|+.+||..||.+||++.+.+.+
T Consensus 295 ~~s~~~~dli~~~L~~dP~~R~ta~e~l~H 324 (346)
T 4fih_A 295 KVSPSLKGFLDRLLVRDPAQRATAAELLKH 324 (346)
T ss_dssp GSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred CCCHHHHHHHHHHCCCCHHHCCCHHHHHCC
T ss_conf 299999999999867995689099999609
No 8
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=393.55 Aligned_cols=261 Identities=29% Similarity=0.450 Sum_probs=212.0
Q ss_pred HHHHHHHCCCCCCCEEEEECCEEEEEEEECC-------EEEEEEEECCCCCC-CHHHHHHHHHHHHCCCC-CCEEEEECC
Q ss_conf 8899872397756424420656999998859-------09999994048831-37999999999743899-840037210
Q 003481 463 ADLQTATCNFSESFKVGQGGFGCVYKGEMLG-------RTVAIKMLYSHNMQ-GQLEFQQEVRVLSKLQH-PHLVTLLGA 533 (816)
Q Consensus 463 ~~l~~at~~f~~~~~LG~G~~g~Vy~g~~~g-------~~vAiK~l~~~~~~-~~~~~~~E~~il~~l~H-pnIv~l~g~ 533 (816)
.+-+...++|...+.||+|+||.||+|.+.+ +.||||++...... ....|.+|+.+|.+++| ||||+++|+
T Consensus 57 ~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~ 136 (353)
T 4ase_A 57 SKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGA 136 (353)
T ss_dssp HHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred CCCEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf 55170579959820982178959999998688854477599999976235868999999999999975799848778899
Q ss_pred CCC---CCCCEEECCCCCCHHHHHHHCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCC
Q ss_conf 047---74112421699961356410299-------------99899999999999999999998516999446077889
Q 003481 534 CPE---AWSLVYEYLPNGSLQDRLFRKSN-------------VSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKP 597 (816)
Q Consensus 534 ~~~---~~~lV~E~~~~gsL~~~L~~~~~-------------~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~iiHrDIkp 597 (816)
|.+ ..+||||||++|+|.++|..... ...++|..++.|+.|||.||.|||+.+ ||||||||
T Consensus 137 ~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~---iiHRDLK~ 213 (353)
T 4ase_A 137 CTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRDLAA 213 (353)
T ss_dssp ECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSG
T ss_pred EEECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCCC
T ss_conf 994697799999838989799999743566654333410110356899999999999999987676278---43574672
Q ss_pred CCEEECCCCCEEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-CCCCCC
Q ss_conf 9567547999068202651101478876777555689998989889643335988961037679999999992-999999
Q 003481 598 QNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLT-GRLPVG 676 (816)
Q Consensus 598 ~NILld~~~~~KL~DFGla~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~ksDVwSlGvil~ellt-G~~P~~ 676 (816)
+|||++.++.+||+|||+|+.+..+... .......||+.|||||++.+..|+.++|||||||+||||+| |+.||.
T Consensus 214 ~NILl~~~~~vKi~DFGlar~~~~~~~~----~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~ 289 (353)
T 4ase_A 214 RNILLSEKNVVKICDFGLARDIYKDPDY----VRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYP 289 (353)
T ss_dssp GGEEECGGGCEEECCCGGGSCTTTCTTS----EEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSST
T ss_pred CCEEECCCCCEEECCCHHHHHCCCCCCC----EEECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCC
T ss_conf 1130579997897965432224568872----032540146665698999469999755374068999999818999999
Q ss_pred CH---HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 82---7899986309632335788999998999999999999531088999997489999999831
Q 003481 677 LA---GEVRRAVSCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLH 739 (816)
Q Consensus 677 ~~---~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~Li~~Cl~~dp~~RPs~~~~l~~~L~~l~ 739 (816)
.. ..+...+..+... ..|...+..+.+|+.+||+.||.+||++. .+++.|+.+.
T Consensus 290 ~~~~~~~~~~~i~~g~~~--------~~p~~~~~~~~~li~~c~~~dP~~RPt~~-eil~~L~~ll 346 (353)
T 4ase_A 290 GVKIDEEFCRRLKEGTRM--------RAPDYTTPEMYQTMLDCWHGEPSQRPTFS-ELVEHLGNLL 346 (353)
T ss_dssp TCCCSHHHHHHHHHTCCC--------CCCTTCCHHHHHHHHHHTCSSGGGSCCHH-HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCC--------CCCCCCCHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHHH
T ss_conf 989899999999738988--------88865789999999997686966793999-9999999999
No 9
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=387.56 Aligned_cols=251 Identities=23% Similarity=0.253 Sum_probs=202.6
Q ss_pred HCCCCCCCEEEEECCEEEEEEEEC--CEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCC--CCCCEEEC
Q ss_conf 239775642442065699999885--90999999404883137999999999743899840037210047--74112421
Q 003481 469 TCNFSESFKVGQGGFGCVYKGEML--GRTVAIKMLYSHNMQGQLEFQQEVRVLSKLQHPHLVTLLGACPE--AWSLVYEY 544 (816)
Q Consensus 469 t~~f~~~~~LG~G~~g~Vy~g~~~--g~~vAiK~l~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~--~~~lV~E~ 544 (816)
.+.|....+||+|+||.||+|++. |..||||+++..... .+|+.++.+++|||||++++++.+ ..||||||
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~~-----~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 131 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFR-----VEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL 131 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCC-----THHHHTTTTCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred HHHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHHHH-----HHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 33517686851387809999998899989999997888869-----9999999857998999399999989999999966
Q ss_pred CCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCC-CEEEEECCCCEECCCCC
Q ss_conf 69996135641029999899999999999999999998516999446077889956754799-90682026511014788
Q 003481 545 LPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSEL-SSKICDFGICRLVTEDT 623 (816)
Q Consensus 545 ~~~gsL~~~L~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~iiHrDIkp~NILld~~~-~~KL~DFGla~~~~~~~ 623 (816)
|++|+|.++|...+ .+++..+..|+.|++.||.|||+.+ |+||||||+||||+.++ .+||+|||+|+.+....
T Consensus 132 ~~gg~L~~~l~~~~---~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~ 205 (336)
T 4g3f_A 132 LEGGSLGQLIKQMG---CLPEDRALYYLGQALEGLEYLHTRR---ILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDG 205 (336)
T ss_dssp CTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCCGGGEEECTTSCCEEECCCTTCEEC----
T ss_pred CCCCCHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHCC---CEECCCCHHHEEEECCCCEEEEEECCCCEECCCCC
T ss_conf 59986999998769---9999999999999999999999889---04261677887995899979996278776856787
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHH--HHHHHHCCCCCCCCCCCCCCC
Q ss_conf 767775556899989898896433359889610376799999999929999998278--999863096323357889999
Q 003481 624 LYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGE--VRRAVSCGKLSSILDPLAGDW 701 (816)
Q Consensus 624 ~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~ksDVwSlGvil~elltG~~P~~~~~~--~~~~~~~~~~~~~~d~~~~~~ 701 (816)
... ........+||+.|||||++.+..|+.++|||||||+||||+||++||..... +...+..+.. .....
T Consensus 206 ~~~-~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~------~~~~~ 278 (336)
T 4g3f_A 206 LGK-SLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIASEPP------PIREI 278 (336)
T ss_dssp ---------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHHHSCC------GGGGS
T ss_pred CCC-CEECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCC------CCHHC
T ss_conf 654-02217854558020089998899989089999999999999978699899899999999980899------80025
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9899999999999953108899999748999999983
Q 003481 702 PTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQL 738 (816)
Q Consensus 702 ~~~~~~~l~~Li~~Cl~~dp~~RPs~~~~l~~~L~~l 738 (816)
+..++..+.+|+.+||+.||.+||++.+ +.+.|...
T Consensus 279 ~~~~s~~~~~li~~~L~~dP~~R~sa~e-l~~~l~~~ 314 (336)
T 4g3f_A 279 PPSCAPLTAQAIQEGLRKEPVHRASAME-LRRKVGKA 314 (336)
T ss_dssp CTTSCHHHHHHHHHHTCSSGGGSCCHHH-HHHHHHHH
T ss_pred CCCCCHHHHHHHHHHCCCCHHHCCCHHH-HHHHHHHH
T ss_conf 8667999999999976289768959999-99999999
No 10
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=1.00 E-value=1 Score=387.43 Aligned_cols=259 Identities=25% Similarity=0.318 Sum_probs=200.1
Q ss_pred CCCCCCEEEEECCEEEEEEEECCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCC------CCCCEEEC
Q ss_conf 977564244206569999988590999999404883137999999999743899840037210047------74112421
Q 003481 471 NFSESFKVGQGGFGCVYKGEMLGRTVAIKMLYSHNMQGQLEFQQEVRVLSKLQHPHLVTLLGACPE------AWSLVYEY 544 (816)
Q Consensus 471 ~f~~~~~LG~G~~g~Vy~g~~~g~~vAiK~l~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~------~~~lV~E~ 544 (816)
+|...++||+|+||.||+|+++|..||||++...... ...+..|+..+.+++|||||+++|+|.+ ..+|||||
T Consensus 4 ~i~L~~~iG~G~fG~Vy~~~~~g~~VAvK~l~~~~~~-~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~Ey 82 (303)
T 3hmm_A 4 TIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSREER-SWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDY 82 (303)
T ss_dssp GEEEEEEEEECSSSEEEEEEETTEEEEEEEECGGGHH-HHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEEC
T ss_pred EEEEEEEEEECCCEEEEEEEECCEEEEEEEECCCCHH-HHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEECC
T ss_conf 8999789840899399999999989999998831336-699999999986089998870999998468872378877517
Q ss_pred CCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-----CCCEEECCCCCCCEEECCCCCEEEEECCCCEEC
Q ss_conf 699961356410299998999999999999999999985169-----994460778899567547999068202651101
Q 003481 545 LPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSK-----PEKIVHGDLKPQNILLDSELSSKICDFGICRLV 619 (816)
Q Consensus 545 ~~~gsL~~~L~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~-----~~~iiHrDIkp~NILld~~~~~KL~DFGla~~~ 619 (816)
|++|+|.++|... +++|..+++|+.|++.||.|||+.+ .++|+||||||+||||+.++.+||+|||+|+..
T Consensus 83 ~~~gsL~~~l~~~----~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~ 158 (303)
T 3hmm_A 83 HEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRH 158 (303)
T ss_dssp CTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEE
T ss_pred CCCCCHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCC
T ss_conf 8999689999757----999899999999999999999985240047898762467842089988997899847987455
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCHHHHHHHHHHHHHHHCCCCCCCH---------------
Q ss_conf 4788767775556899989898896433359------8896103767999999999299999982---------------
Q 003481 620 TEDTLYLPSFHRSTAPKGSFPYADPEYHRTG------VLTPKSDSYSFGLIILQLLTGRLPVGLA--------------- 678 (816)
Q Consensus 620 ~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~------~~s~ksDVwSlGvil~elltG~~P~~~~--------------- 678 (816)
....... .......+||+.|||||++.+. .++.++|||||||+||||+||.+||...
T Consensus 159 ~~~~~~~--~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~ 236 (303)
T 3hmm_A 159 DSATDTI--DIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDP 236 (303)
T ss_dssp ETTTTEE--SCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSC
T ss_pred CCCCCCE--EEECCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCC
T ss_conf 6777732--21046424664626988845654556776570676664799999998789987766522353100254543
Q ss_pred --HHHHHHHHCCCCCCCCCCCCCC--CCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf --7899986309632335788999--99899999999999953108899999748999999983101
Q 003481 679 --GEVRRAVSCGKLSSILDPLAGD--WPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVA 741 (816)
Q Consensus 679 --~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~l~~Li~~Cl~~dp~~RPs~~~~l~~~L~~l~~~ 741 (816)
..+...+..+ .++|.... .+......+.+|+.+||+.||.+|||+. .+.+.|+.+...
T Consensus 237 ~~~~~~~~~~~~----~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~-ei~~~L~~l~~~ 298 (303)
T 3hmm_A 237 SVEEMRKVVCEQ----KLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTAL-RIKKTLSQLSQQ 298 (303)
T ss_dssp CHHHHHHHHTTS----CCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHH-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHCC----CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHHHHH
T ss_conf 099999987502----57998876556658999999999997605975795999-999999988987
Done!