BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003482
(816 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8R5L3|VPS39_MOUSE Vam6/Vps39-like protein OS=Mus musculus GN=Vps39 PE=2 SV=1
Length = 886
Score = 214 bits (546), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 213/798 (26%), Positives = 369/798 (46%), Gaps = 158/798 (19%)
Query: 27 ENIGVFVDQNGKLLQADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVL 86
+++ V +++ G Q + W++ P+A+ Q PY +A+LPR VE+R+L P L+Q+I L
Sbjct: 223 DDLTVVLNEEGICTQKCALNWTDIPVAMEHQPPYIVAVLPRYVEIRTLE-PRLLVQSIEL 281
Query: 87 QNVRHLIPS-SNAVVVALENSIFGLFPVPLGAQIVQLTASGDFEEALALCKLLPPEDASL 145
Q R + SN + VA + ++ L PVP+ QI QL FE AL L ++ +D S
Sbjct: 282 QRPRFITSGGSNIIYVASNHFVWRLIPVPMATQIQQLLQDKQFELALQLAEM---KDDSD 338
Query: 146 RAAKEGSIHIR--FAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSIVLPKTTVVPEPE 203
++ HI+ +A LF ++E+M+ F D T+ + LYP + LP +
Sbjct: 339 SEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAKLGTDPTHVMGLYPDL-LPT-----DYR 392
Query: 204 RLLDISSDAPSLSRGSSGMSDDMESSPPAQLSELDENATLKSKKMSHNTLMALIKFLQKK 263
+ L + P+LS +EL++ +H +ALI +L +K
Sbjct: 393 KQLQYPNPLPTLSG-----------------AELEK---------AH---LALIDYLTQK 423
Query: 264 RSSIIEKATAEGTEEVVLDAVGDNFTSHDSTRFKKSSKGRGTIPMYSGAREMAAILDTAL 323
RS +++K N + H S+ S GT P +++ I+DT L
Sbjct: 424 RSQLVKKL---------------NDSDHQSS---TSPLMEGT-PTIKSKKKLLQIIDTTL 464
Query: 324 LQALLLTGQSSAALELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHE 383
L+ L T + A L N+C ++ E +L+K + Y+ L+ LY+ H +AL++L
Sbjct: 465 LKCYLHTNVALVAPLLRLENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVL-- 522
Query: 384 LVEESK-SNQSQDEHTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLS 442
V++SK +N H E ++YL+ L + L+ +S+ VL P +++F
Sbjct: 523 -VDQSKKANSPLKGH------ERTVQYLQHLGTENLHLIFSYSVWVLRDFPEDGLKIFTE 575
Query: 443 G-----NIPADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWY 497
++P D V ++L + ++ YLE ++ + E + N ++Q+Y +V
Sbjct: 576 DLPEVESLPRDRVLNFLIENFKALAIPYLEHIIHVWEET-GSQFHNCLIQLYCEKVQSLM 634
Query: 498 SDL---------SAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPADALYEERAI 548
D + R+KLL LE S Y+P L+ P D L EERA+
Sbjct: 635 KDYLLSLPTGKSPVPAGEEGGELGEYRQKLLMFLEISSHYDPGRLICDFPFDGLLEERAL 694
Query: 549 LLGKMNQHELALSLYVHKLCVPELALAYCDRVYESIAHQPSGKSSGNIYLTLLQIYLNPR 608
LLG+M +HE AL +YVH L ++A YC + Y+ + + + ++YL+LL++YL+P
Sbjct: 695 LLGRMGKHEQALFIYVHVLKDTKMAKEYCHKHYDQ-----NKEGNKDVYLSLLRMYLSP- 748
Query: 609 RTTKNFEKQITNLVSSQNTTIPKAGSVTAVKVKGGRTTKKIASIEGA-EDMRMSPSSTDS 667
P + +K++ + A+++ A + + + S D+
Sbjct: 749 ---------------------PSIHCLGPIKLE---LLEPQANLQAALQVLELHYSKLDT 784
Query: 668 GRSDGDAEEFSEEGDSTIMIDQVLDLLSQRWDRINGAQALKLLPRETKLQNLLPFLEPLL 727
++ ++ D I +++VL+ +Q+ R N L+NLL
Sbjct: 785 TKAINLLPANTQINDIRIFLEKVLEENAQK-KRFNQV-----------LKNLL------- 825
Query: 728 RKSSEAHRNLSVIKSLRQSENLQVKDE--LYNQRKTVVKITSDSMCSLCSKKIGTSVFAV 785
+E L+V++E L+ Q K + IT + +C +C KKIG S FA
Sbjct: 826 -----------------HAEFLRVQEERILHQQVKCI--ITEEKVCMVCKKKIGNSAFAR 866
Query: 786 YPNGKTIVHFVCFRDSQS 803
YPNG +VH+ C ++ S
Sbjct: 867 YPNG-VVVHYFCSKEVNS 883
>sp|Q96JC1|VPS39_HUMAN Vam6/Vps39-like protein OS=Homo sapiens GN=VPS39 PE=1 SV=2
Length = 886
Score = 207 bits (528), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 213/795 (26%), Positives = 364/795 (45%), Gaps = 158/795 (19%)
Query: 27 ENIGVFVDQNGKLLQADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVL 86
+++ V +++ G Q + W++ P+A+ Q PY IA+LPR VE+R+ P L+Q+I L
Sbjct: 223 DDLTVVLNEEGICTQKCALNWTDIPVAMEHQPPYIIAVLPRYVEIRTFE-PRLLVQSIEL 281
Query: 87 QNVRHLIPS-SNAVVVALENSIFGLFPVPLGAQIVQLTASGDFEEALALCKLLPPEDASL 145
Q R + SN + VA + ++ L PVP+ QI QL FE AL L ++ +D S
Sbjct: 282 QRPRFITSGGSNIIYVASNHFVWRLIPVPMATQIQQLLQDKQFELALQLAEM---KDDSD 338
Query: 146 RAAKEGSIHIR--FAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSIVLPKTTVVPEPE 203
++ HI+ +A LF ++E+M+ F D T+ + LYP + LP +
Sbjct: 339 SEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAKLGTDPTHVMGLYPDL-LPT-----DYR 392
Query: 204 RLLDISSDAPSLSRGSSGMSDDMESSPPAQLSELDENATLKSKKMSHNTLMALIKFLQKK 263
+ L + P LS +EL++ +H +ALI +L +K
Sbjct: 393 KQLQYPNPLPVLSG-----------------AELEK---------AH---LALIDYLTQK 423
Query: 264 RSSIIEKATAEGTEEVVLDAVGDNFTSHDSTRFKKSSKGRGTIPMYSGAREMAAILDTAL 323
RS +++K N + H S+ S GT P +++ I+DT L
Sbjct: 424 RSQLVKKL---------------NDSDHQSS---TSPLMEGT-PTIKSKKKLLQIIDTTL 464
Query: 324 LQALLLTGQSSAALELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHE 383
L+ L T + A L N+C ++ E +L+K + Y+ L+ LY+ H +AL++L
Sbjct: 465 LKCYLHTNVALVAPLLRLENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVL-- 522
Query: 384 LVEESK-SNQSQDEHTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLS 442
V++SK +N H E ++YL+ L + L+ +S+ VL P +++F
Sbjct: 523 -VDQSKKANSPLKGH------ERTVQYLQHLGTENLHLIFSYSVWVLRDFPEDGLKIFTE 575
Query: 443 G-----NIPADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWY 497
++P D V +L + + YLE ++ + E + S N ++Q+Y +V
Sbjct: 576 DLPEVESLPRDRVLGFLIENFKGLAIPYLEHIIHVWEETGS-RFHNCLIQLYCEKVQGLM 634
Query: 498 SDL---------SAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPADALYEERAI 548
+ +E R+KLL LE S Y+P L+ P D L EERA+
Sbjct: 635 KEYLLSFPAGKTPVPAGEEEGELGEYRQKLLMFLEISSYYDPGRLICDFPFDGLLEERAL 694
Query: 549 LLGKMNQHELALSLYVHKLCVPELALAYCDRVYESIAHQPSGKSSGNIYLTLLQIYLNPR 608
LLG+M +HE AL +YVH L +A YC + Y+ + + ++YL+LL++YL+P
Sbjct: 695 LLGRMGKHEQALFIYVHILKDTRMAEEYCHKHYDR-----NKDGNKDVYLSLLRMYLSP- 748
Query: 609 RTTKNFEKQITNLVSSQNTTIPKAGSVTAVKVKGGRTTKKIASIEGA-EDMRMSPSSTDS 667
P + +K++ + A+++ A + + + S D+
Sbjct: 749 ---------------------PSIHCLGPIKLE---LLEPKANLQAALQVLELHHSKLDT 784
Query: 668 GRSDGDAEEFSEEGDSTIMIDQVLDLLSQRWDRINGAQALKLLPRETKLQNLLPFLEPLL 727
++ ++ D I +++VL+ +Q+ R N L+NLL
Sbjct: 785 TKALNLLPANTQINDIRIFLEKVLEENAQK-KRFNQV-----------LKNLL------- 825
Query: 728 RKSSEAHRNLSVIKSLRQSENLQVKDE--LYNQRKTVVKITSDSMCSLCSKKIGTSVFAV 785
+E L+V++E L+ Q K + IT + +C +C KKIG S FA
Sbjct: 826 -----------------HAEFLRVQEERILHQQVKCI--ITEEKVCMVCKKKIGNSAFAR 866
Query: 786 YPNGKTIVHFVCFRD 800
YPNG +VH+ C ++
Sbjct: 867 YPNG-VVVHYFCSKE 880
>sp|Q3UR70|TGFA1_MOUSE Transforming growth factor-beta receptor-associated protein 1
OS=Mus musculus GN=Tgfbrap1 PE=2 SV=1
Length = 860
Score = 103 bits (256), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 187/785 (23%), Positives = 298/785 (37%), Gaps = 184/785 (23%)
Query: 28 NIGVFVDQNGKLLQADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQ 87
+G+F G + Q + WSE I + PY IAL + V S+ + QT+ +
Sbjct: 228 GLGMFATVAG-ISQRAPVHWSENVIGAAVCFPYVIALDDEFITVHSM-LDQQQKQTLPFK 285
Query: 88 NVRHLIPSSNAVVVALENSIFGLFPVPLGAQIVQLTASGDFEEALALCKL----LPPEDA 143
L V+VA ++ L P+PL QI L A+ EEAL L K +P E
Sbjct: 286 EGHILQDFEGRVIVATSKGVYILVPLPLEKQIQDLLANRRVEEALVLAKGARRNIPKEKF 345
Query: 144 SL--RAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSIVLPKTTVVPE 201
+ R + + I+FA F EA E F +SQ+D+ +SLYP +LP ++
Sbjct: 346 QVMYRRILQQAGFIQFAQLQF-----LEAKELFRSSQLDVRELISLYP-FLLPTSS---- 395
Query: 202 PERLLDISSDAPSLSRGSSGMSDDMESSPPAQLSELDENATLKSKKMSHNTLMALIKFLQ 261
S +R + E + QL++ D+ K K+ L+ +L
Sbjct: 396 ------------SFTRSHPPLH---EYADLNQLTQGDQEKMAKCKRF-------LMSYLN 433
Query: 262 KKRSSIIEKATAEGTEEVVLDAVGDNFTSHDSTRFKKSSKGRGTIPMYSGAREMAAILDT 321
+ RS+ + A G +E + DT
Sbjct: 434 EIRSTEV----ANGYKEDI---------------------------------------DT 450
Query: 322 ALLQALLLTGQSSAALELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLL 381
ALL+ L + L+LL N+C + L+K Y AL LY N + A++L
Sbjct: 451 ALLK-LYAEADHDSLLDLLVTENFCLLTDSAAWLEKHKKYFALGLLYHYNKQDASAVQLW 509
Query: 382 HELVEESKSNQSQDEHTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFL 441
+V N + T+ E I+++L C D LV + +L+ +++F
Sbjct: 510 VNIV-----NGDIQDSTRSDLYEYIVDFLT-YC-LDQELVWTHADWLLQKSEEIGVQIFT 562
Query: 442 SGNI---------PADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSE 492
+ P ++++S LK+Y P +YLE L ++ + +YL E
Sbjct: 563 KRPLDEQQQTSFNPDNIISS-LKKY-PKALVKYLE-HLVIDRRLQKEEYHTHLAILYLEE 619
Query: 493 VLDWYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPADALYEERAILLGK 552
VL + D +A + T+ KL L+ Y +L +++ L E AIL GK
Sbjct: 620 VLRQRVSTGGK---DVEA-TETQAKLRRLLQKSDLYRVHLLKEKVQGAGLPMESAILHGK 675
Query: 553 MNQHELALSLYVHKLCVPELALAYCDRVYESIAHQPSGKSSGNIYLTLLQIYLNPRRTTK 612
+ +HE AL + VH++ A YC ++ S + + ++ TLL +YL + +
Sbjct: 676 LGEHEKALHILVHEMGDFSAAEDYC--LWSSEGQGAACRQ--RLFHTLLAMYLRAGPSAQ 731
Query: 613 NFEKQITNLVSSQNTTIPKAGSVTAVKVKGGRTTKKIASIEGAEDMRMSPSSTDSGRSDG 672
+ +L++
Sbjct: 732 DLTVAAVDLLNHH----------------------------------------------- 744
Query: 673 DAEEFSEEGDSTIMIDQVLDLLSQRWDRINGAQALKLLPRETKLQNLLPFLEPLLRKSSE 732
A EF + QVL LL W +Q L PFL +R S
Sbjct: 745 -AREFD--------VTQVLQLLPDTW----------------SVQLLCPFLMGAMRDSIH 779
Query: 733 AHRNLSVIKSLRQSENLQVKDELYNQRKTVVKITSDSMCSLCSKKIGTSVFAVYPNGKTI 792
A R V L +SENL + + V+++ +C LC G VF YPNG +
Sbjct: 780 ARRTTQVALGLAKSENLIYMYDKMKLKGNAVRLSERELCQLCQNPFGEPVFVRYPNGG-L 838
Query: 793 VHFVC 797
VH C
Sbjct: 839 VHTHC 843
>sp|Q8WUH2|TGFA1_HUMAN Transforming growth factor-beta receptor-associated protein 1
OS=Homo sapiens GN=TGFBRAP1 PE=1 SV=1
Length = 860
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 162/620 (26%), Positives = 250/620 (40%), Gaps = 111/620 (17%)
Query: 28 NIGVFVDQNGKLLQADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQ 87
+G+F G + Q + WSE I + PY IAL + V S+ + QT+ +
Sbjct: 228 GLGMFATVAG-ISQRAPVHWSENVIGAAVSFPYVIALDDEFITVHSM-LDQQQKQTLPFK 285
Query: 88 NVRHLIPSSNAVVVALENSIFGLFPVPLGAQIVQLTASGDFEEALALCKL----LPPEDA 143
L V+VA ++ L P+PL QI L AS EEAL L K +P E
Sbjct: 286 EGHILQDFEGRVIVATSKGVYILVPLPLEKQIQDLLASRRVEEALVLAKGARRNIPKEKF 345
Query: 144 SL--RAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSIVLPKTTVVPE 201
+ R + + I+FA F EA E F + Q+D+ +SLYP +LP ++
Sbjct: 346 QVMYRRILQQAGFIQFAQLQF-----LEAKELFRSGQLDVRELISLYP-FLLPTSS---- 395
Query: 202 PERLLDISSDAPSLSRGSSGMSDDMESSPPAQLSELDENATLKSKKMSHNTLMALIKFLQ 261
S +R + E + QL++ D+ K K+ L+ +L
Sbjct: 396 ------------SFTRSHPPLH---EYADLNQLTQGDQEKMAKCKRF-------LMSYLN 433
Query: 262 KKRSSIIEKATAEGTEEVVLDAVGDNFTSHDSTRFKKSSKGRGTIPMYSGAREMAAILDT 321
+ RS+ + A G +E + DT
Sbjct: 434 EVRSTEV----ANGYKEDI---------------------------------------DT 450
Query: 322 ALLQALLLTGQSSAALELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLL 381
ALL+ L + L+LL N+C + L+K Y AL LY N + A++L
Sbjct: 451 ALLK-LYAEADHDSLLDLLVTENFCLLTDSAAWLEKHKKYFALGLLYHYNNQDAAAVQLW 509
Query: 382 HELVEESKSNQSQDEHTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFL 441
+V N + T+ E I+++L C D LV ++ VL+ +++F
Sbjct: 510 VNIV-----NGDVQDSTRSDLYEYIVDFLT-YC-LDEELVWAYADWVLQKSEEVGVQVFT 562
Query: 442 SGNI---------PADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSE 492
+ P D++N LK+Y P +YLE L +++ + +YL E
Sbjct: 563 KRPLDEQQKNSFNPDDIINC-LKKY-PKALVKYLE-HLVIDKRLQKEEYHTHLAVLYLEE 619
Query: 493 VLDWYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPADALYEERAILLGK 552
VL SA K E + T+ KL L+ Y LL+RL L E AIL GK
Sbjct: 620 VL--LQRASASGKGAEA--TETQAKLRRLLQKSDLYRVHFLLERLQGAGLPMESAILHGK 675
Query: 553 MNQHELALSLYVHKLCVPELALAYCDRVYESIAHQPSGKSSGNIYLTLLQIYLNPRRTTK 612
+ +HE AL + VH+L A YC ++ S P + ++ TLL IYL+ T
Sbjct: 676 LGEHEKALHILVHELQDFAAAEDYC--LWCSEGRDPPHRQ--QLFHTLLAIYLHAGPTAH 731
Query: 613 NFEKQITNLVSSQNTTIPKA 632
+L++ T A
Sbjct: 732 ELAVAAVDLLNRHATEFDAA 751
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 691 LDLLSQRWDRINGAQALKLLPRETKLQNLLPFLEPLLRKSSEAHRNLSVIKSLRQSENLQ 750
+DLL++ + AQ L++LP +Q L PFL +R S A R + V L +SENL
Sbjct: 738 VDLLNRHATEFDAAQVLQMLPDTWSVQLLCPFLMGAMRDSIHARRTMQVALGLARSENLI 797
Query: 751 VKDELYNQRKTVVKITSDSMCSLCSKKIGTSVFAVYPNGKTIVHFVC 797
+ + + ++++ +C +C VF YPNG +VH C
Sbjct: 798 YTYDKMKLKGSSIQLSDKKLCQICQNPFCEPVFVRYPNG-GLVHTHC 843
>sp|A4IG72|TGFA1_DANRE Transforming growth factor-beta receptor-associated protein 1
homolog OS=Danio rerio GN=tgfbrap1 PE=2 SV=1
Length = 863
Score = 97.1 bits (240), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 155/596 (26%), Positives = 246/596 (41%), Gaps = 112/596 (18%)
Query: 28 NIGVFVDQNGKLLQADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQ 87
+G+F + G + Q + WSE IA + PY +AL V V S+ + L QT+ +
Sbjct: 228 GLGMFANAEG-ISQRAPVSWSENVIAAAVCFPYVVALDEGFVTVHSM-LDQQLKQTLSFR 285
Query: 88 NVRHLIPSSNAVVVALENSIFGLFPVPLGAQIVQLTASGDFEEALALCKL----LPPEDA 143
+ + L VVVA +++ L P+PL QI L AS EEAL L + +P E
Sbjct: 286 DGQLLQDFEGKVVVASSKAVYMLVPLPLERQIQDLLASHRVEEALTLTEAAQRNIPKEKY 345
Query: 144 SL--RAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSIVLPKTTVVPE 201
+ R + + I+F F EA EHF Q+D+ +SLYP ++LP ++
Sbjct: 346 QILHRRILQQAGFIQFGQLQF-----LEAKEHFRKGQLDVRELISLYP-LLLPASSSFTR 399
Query: 202 PERLLDISSDAPSLSRGSSGMSDDMESSPPAQLSELDENATLKSKKMSHNTLMALIKFLQ 261
L +D L++G D+ + K+ LI +L
Sbjct: 400 CHPPLHEFADLNHLTQG-------------------DQEKVQRFKRF-------LISYLH 433
Query: 262 KKRSSIIEKATAEGTEEVVLDAVGDNFTSHDSTRFKKSSKGRGTIPMYSGAREMAAILDT 321
+ RSS I A G E V DT
Sbjct: 434 EVRSSDI----ANGFHEDV---------------------------------------DT 450
Query: 322 ALLQALLLTGQSSAALELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLL 381
ALL+ T S L+LL N C + L+K + Y AL LY N + AL++
Sbjct: 451 ALLKLYAETSHESL-LDLLASENACLLADSAPWLEKHHKYYALGLLYHYNGQDAAALQMW 509
Query: 382 HELVEESKSNQSQDEHTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFL 441
++V N + T+ E ++++L D LV + L+ +++F
Sbjct: 510 VKIV-----NGDLQDSTRPDLFEYVVDFLSFCSNLD--LVWRHADWALQKDQKIGVQIFT 562
Query: 442 S--------GNIPADLVNSYLKQYSPSMQGRYLELMLAMNENSISG-NLQNEMVQIYLSE 492
G + AD V +YL+++S Q L L + E + + +Y +
Sbjct: 563 KRPTSEERRGQLNADDVITYLQKHS---QALLLYLEHLVLEKKLQKEKYHTHLAVLYAEK 619
Query: 493 VLDWYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRL-PADALYEERAILLG 551
VL S S E+ S R+KL L+ + Y ++LL ++ ++ L ERA L G
Sbjct: 620 VLGLISRPST----SEEQLSAARQKLQRLLKESNLYRVQLLLGKIQDSELLLLERATLHG 675
Query: 552 KMNQHELALSLYVHKLCVPELALAYCDRVYESIAHQPSGKSSGNIYLTLLQIYLNP 607
K+ +H+ AL + VH+L A YC + S + S + N++ LL +YL+P
Sbjct: 676 KLEEHDKALHVLVHQLKDSSAAEEYCS--WASASQDSSYRQ--NLFHQLLSVYLDP 727
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
Query: 691 LDLLSQRWDRINGAQALKLLPRETKLQNLLPFLEPLLRKSSEAHRNLSVIKSLRQSENLQ 750
+DLL++ + + + LKLLP + L L PFL +R + A V L +++NLQ
Sbjct: 739 VDLLNRHAEVFDAVRVLKLLPEDWSLPLLRPFLCGAMRATVHARCTSQVALGLARAQNLQ 798
Query: 751 VKDELYNQRKTVVKITSDSMCSLCSKKIGTSVFAVYPNGKTIVHFVC 797
+ + R V ++ C LC A P G T VH C
Sbjct: 799 LLHDRLKYRGGPVLVSEKKGCQLCHNTFSEPDCACLPGG-TPVHINC 844
>sp|A7MB11|TGFA1_BOVIN Transforming growth factor-beta receptor-associated protein 1
OS=Bos taurus GN=TGFBRAP1 PE=2 SV=1
Length = 859
Score = 93.6 bits (231), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 152/599 (25%), Positives = 238/599 (39%), Gaps = 120/599 (20%)
Query: 28 NIGVFVDQNGKLLQADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQ 87
+G+F G + Q + WSE I + PY +AL + V S+ + QT+ +
Sbjct: 228 GLGMFATVAG-ISQRAPVRWSENVIGAAVCFPYVVALDDEFITVHSM-LDQQQKQTLPFK 285
Query: 88 NVRHLIPSSNAVVVALENSIFGLFPVPLGAQIVQLTASGDFEEALALCKLLPPEDASLRA 147
L V+VA ++ L P+PL +I L AS EEAL L K + R
Sbjct: 286 EGHILQDFEGRVIVATSKGVYILVPLPLEKRIQDLLASHRVEEALVLAK------GARRN 339
Query: 148 AKEGSIHIRFAHYLFDTG-------SYEEAMEHFLASQVDITYALSLYPSIVLPKTTVVP 200
+ + + L G + +A E F + Q+D+ +SLYP ++LP ++
Sbjct: 340 IPKEKFQVMYRRILLQAGFIQFAQLQFLKAKELFRSGQLDVRELISLYP-LLLPTSS--- 395
Query: 201 EPERLLDISSDAPSLSRGSSGMSDDMESSPPAQLSELDENATLKSKKMSHNTLMALIKFL 260
S +R + E + QL++ D++ K K+ L+ +L
Sbjct: 396 -------------SFTRSHPPLH---EFADLNQLTQGDQDKVAKCKRF-------LMSYL 432
Query: 261 QKKRSSIIEKATAEGTEEVVLDAVGDNFTSHDSTRFKKSSKGRGTIPMYSGAREMAAILD 320
+ RS+ + A G +E + D
Sbjct: 433 NEVRSTEV----ANGYKEDI---------------------------------------D 449
Query: 321 TALLQALLLTGQSSAALELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKL 380
TALL+ L + L+LL N+C + L+K Y AL LY N + A++L
Sbjct: 450 TALLK-LYAEADHDSLLDLLVTENFCLLPDSAAWLEKHKKYFALGLLYHYNHQDAAAVQL 508
Query: 381 LHELVEESKSNQSQDEHTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELF 440
+V N + T+ E I+++L TDP LV + VL+ +++F
Sbjct: 509 WVSIV-----NGDIQDSTRSDLYEYIVDFLT--YSTDPDLVWRHADWVLQRSQEVGVQVF 561
Query: 441 L--------SGNIPADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSE 492
SG P D++ S LK+Y P +YLE L + +YL E
Sbjct: 562 TKRPLDEQQSGFNPDDII-SCLKKY-PQALVKYLE-HLVTERRLQKEEYHTHLAVLYLDE 618
Query: 493 VLDWYSDLSAQQKW---DEKA-YSPTRKKLLSALESISGYNPEVLLKRLPADALYEERAI 548
VL QQ+ D+ A + T+ KL L+ Y L+ R L E AI
Sbjct: 619 VL--------QQRPCTPDKDAEVTETQAKLRRLLQESDLYRVHFLMDRTRGAGLPLESAI 670
Query: 549 LLGKMNQHELALSLYVHKLCVPELALAYCDRVYESIAHQPSGKSSGNIYLTLLQIYLNP 607
L GK+ QHE AL + VH+L A YC ++ S P + ++ LL +YL P
Sbjct: 671 LHGKLEQHEEALHILVHELADFPAAEDYC--LWRSEGRDPPYRQ--RLFHLLLAVYLGP 725
Score = 63.5 bits (153), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Query: 691 LDLLSQRWDRINGAQALKLLPRETKLQNLLPFLEPLLRKSSEAHRNLSVIKSLRQSENLQ 750
+DLL++ + AQ L+LLP +Q L PFL +R S A R V L +SENL
Sbjct: 737 VDLLNRHAVEFDAAQVLQLLPGTWSVQLLRPFLMGAMRDSIHARRTTQVAVGLARSENLI 796
Query: 751 VKDELYNQRKTVVKITSDSMCSLCSKKIGTSVFAVYPNGKTIVHFVC 797
K + + + V+++ + +C +C VF YPNG +VH C
Sbjct: 797 YKYDKMKLKGSSVRLSDEKLCQMCQNPFLEPVFVRYPNGG-LVHTHC 842
>sp|O13955|VAM6_SCHPO Vacuolar morphogenesis protein 6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=vam6 PE=3 SV=1
Length = 905
Score = 91.3 bits (225), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 140/574 (24%), Positives = 234/574 (40%), Gaps = 73/574 (12%)
Query: 36 NGKLLQADR--ICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLI 93
N K LQ R + W P AVI PY I L + + + + + YA+IQ I + N+
Sbjct: 229 NLKSLQVSRNPLRWPTVPQAVIYNSPYIITLHNQYIYIWN-KETYAMIQQIGISNIYSTF 287
Query: 94 PSSNAVVVALENSIFGLFPVPLGAQIVQLTASGDFEEALAL-----CKLLPPEDASLRAA 148
+ ++ L P QI L + + EA+++ P D LR
Sbjct: 288 SCHKNTFFTSNSYVWILTPEDFSNQIEALLNTENLNEAISVLSQITVSQFPKRDYYLRIT 347
Query: 149 KEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSIVLPKTTVVPEPERLLDI 208
K A F +G Y+ AM F + L L+P ++ + + I
Sbjct: 348 KREK-----ALRSFSSGDYDLAMRLFSEISESPSTVLGLFPGLLDNNYS------DAISI 396
Query: 209 SSDAPSLSRG--SSGMSDDMESSPPAQLSELDENATLKSKKMSHNTLMALIKFLQKKRSS 266
S APS + S+ + S+ L D +T+ + K L +L +L R
Sbjct: 397 LSMAPSQNESIESNVLFPGNHSNSQTDLRNGDAVSTVANNK----RLRSLSTYLTDSRRK 452
Query: 267 IIEKATAEGTEEVVLDAVGDNFTSHDSTRFKKSSK-----GRGTIPMYSGAREMAAILDT 321
+ F S+D + K GT+ ++A +DT
Sbjct: 453 ------------------ANRFLSYDEEHYFLQKKNLFLNADGTLVAKEKLEKIAVQIDT 494
Query: 322 ALLQALLLTGQSSAAL--ELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALK 379
L ++ SS AL LL+ N C+ + E L Y L+E Y + H AL
Sbjct: 495 TLFLIYMI---SSPALVGSLLRLPNRCETSVVETNLLSAKMYRELVEYYYGKSLHEAALD 551
Query: 380 LLHELVEE---SKSNQSQDEHTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQT 436
LL +L +E + S + + T K+ P I+ YL+ L L+ ++S + L P +
Sbjct: 552 LLTKLCDEPTDTLSLKGKSNTTSKYEP--ILSYLEKLSPELDHLIFKYSRVPLSEDPQNS 609
Query: 437 IELFLSGN-----IPADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLS 491
I +F+ N I +V YL+ S + YLE +L N+ + + + +YL
Sbjct: 610 IVIFIDENSEASTISKGVVLKYLETISYKVSIIYLEKLLLDNKFNDTV-FPTRLALLYLK 668
Query: 492 EVLDW--YSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPA--DALYEERA 547
+L+ +D Q+ + T +KL L + Y+ V+L+ + + + L
Sbjct: 669 RILELEETTDFKNQE-----VFKQTIEKLEDYLTNSKQYDANVVLQEINSQDEFLSTVSI 723
Query: 548 ILLGKMNQHELALSLYVHKLCVPELALAYCDRVY 581
IL ++++H+ AL +Y+ L E AL+YC+ VY
Sbjct: 724 ILYRRLSRHQDALDVYLKILNDWEGALSYCNSVY 757
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 689 QVLDLLSQRWDRINGAQALKLLPRETKLQNLLPFLEPLLRKSSEAHRNLSVIKSLRQSEN 748
+LD +++ R++ + LLP+ +++ R+ E N L Q
Sbjct: 783 NILDFITKYSSRLDLNRVFPLLPKNISMKSYHSLFSSQFRQLFEELSNKETQSKLYQKRL 842
Query: 749 LQVKDELYNQRKTVVKITSDSMCSLCSKKIGTSVFAVYPNGKTIVHFVC 797
+ +EL R V IT + C C K++G SV +++P+G ++VH+ C
Sbjct: 843 EDLNEELTKVRSEKVVITREKTCLFCHKRLGKSVISIFPDG-SVVHYGC 890
>sp|Q07468|VAM6_YEAST Vacuolar morphogenesis protein 6 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=VAM6 PE=1 SV=1
Length = 1049
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 131/297 (44%), Gaps = 48/297 (16%)
Query: 315 MAAILDTALLQALLLTGQSSAALELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARH 374
M ++DT L + L ++ N+CD + L+ ++ + L++ Y H
Sbjct: 599 MLTLIDTVLFKCYLYYNPPMVG-PFIRVENHCDSHVIVTELKIRHMFKDLIDFYYKRGNH 657
Query: 375 REALKLLHELVEESKSNQSQDEHTQKFNPES---IIEYLKPLCGTDPMLVLEFSMLVLES 431
EALK L +LV+E +++ + + QK + +I YLK L ++ ++ +L
Sbjct: 658 EEALKFLTDLVDELENDNTDQKQRQKIDHGVKILVIYYLKKLSNPQLDVIFTYTDWLLNR 717
Query: 432 CPTQTIELFLSGNIPAD----------LVNSYLKQYSPSMQGRYLELMLAMNENSISGN- 480
+I+ LS D V Y+K++ + +YLE A++ + GN
Sbjct: 718 -HNDSIKEILSSIFFYDSQACSSRDHLKVYGYIKKFDKLLAIQYLE--FAISTFRLEGNK 774
Query: 481 LQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLK----- 535
L ++++YL + D+ + TR KL S LE+ S Y P +LK
Sbjct: 775 LHTVLIKLYLENL-----DIPS-----------TRIKLKSLLETTSVYEPRTILKLLNDA 818
Query: 536 ------RLPADALYEERAIL---LGKMNQHELALSLYVHKLCVPELALAYCDRVYES 583
+LP + L + + L K+ H+ A+ + + ++ + A +YC+ VY+S
Sbjct: 819 IESGSDQLPTNQLNFVKYLKIFPLSKLENHKEAVHILLDEIDDYKAATSYCNDVYQS 875
Score = 35.4 bits (80), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 7/114 (6%)
Query: 690 VLDLLSQRWDRINGAQALKLLPRETKLQNLLPFLEPLLRKSSEAHRNLSVIKSLRQSENL 749
+L+ L ++N A+ K LP++ L ++ + LL+K + + K+L Q E +
Sbjct: 904 ILNFLQDHGSKLNSAEIYKNLPQDISLYDIGRVVSQLLKKHTSKMDETRLEKALLQVELV 963
Query: 750 QVKDELYNQRKTVVKITSDSM-CSLCSKKI---GTSVFAVYPN-GKTIV-HFVC 797
+L N+R + + SDS C +C K I GT + + G+ I+ H+ C
Sbjct: 964 ATTYKL-NERMSSYGVLSDSHKCPICKKVISNFGTDSISWFTREGRNIITHYNC 1016
>sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965,
mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2
SV=1
Length = 650
Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 52/120 (43%), Gaps = 7/120 (5%)
Query: 403 PESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLSGNIPADLVNSYLKQYSPSMQ 462
P+ E LK L P+L +EF LV CP + FL I L S L P
Sbjct: 99 PDEASEILKSL--NSPLLAVEFFKLVPSLCPYSQNDPFLYNRIILILSRSNL----PDRF 152
Query: 463 GRYLELMLAMNENSISGNLQNEMVQI-YLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSA 521
R ++ +M ++++ GN+ + I + D L +KWD K S T K LL A
Sbjct: 153 DRVRSILDSMVKSNVHGNISTVNILIGFFGNTEDLQMCLRLVKKWDLKMNSFTYKCLLQA 212
>sp|Q9UTR5|RGF2_SCHPO Rho1 guanine nucleotide exchange factor 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rgf2 PE=1 SV=1
Length = 1158
Score = 37.4 bits (85), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 13/118 (11%)
Query: 28 NIGVFVDQNG-KLLQADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVL 86
+ FV+ NG K Q+ I W P + PY +A P +E+R+ L+Q I+
Sbjct: 1049 DFAFFVNTNGWKSRQSWMINWEGQPQGCALCYPYILAFEPDFIEIRNAETA-ELVQIIMG 1107
Query: 87 QNVRHLIPSSNAVVVALENSIFGLFPVPLGAQIVQLTASGDFEEALALCKLLPPEDAS 144
QN++ L+ ++ ++ P+P +SG E + +LPP +A+
Sbjct: 1108 QNIK-LLTDGRGLISEGGEILYSTEPIPF--------SSG--ENPIVHSLILPPANAA 1154
>sp|P49025|CTRO_MOUSE Citron Rho-interacting kinase OS=Mus musculus GN=Cit PE=1 SV=3
Length = 2055
Score = 37.0 bits (84), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 14 SPGKRESVFSDMMENIGVFVDQNGKLLQADRICWSEAPIAVIIQKPYAIALLPRRVEVRS 73
S G+RE E GVFVD G+ + D + WS P+A ++PY +EV
Sbjct: 1819 SAGQREEYLLCFHE-FGVFVDSYGRRSRTDDLKWSRLPLAFAYREPYLFVTHFNSLEVIE 1877
Query: 74 LRVPYALIQT----IVLQNVRHLIP--SSNAVVVA 102
++ +L + + N R+L P SS A+ +A
Sbjct: 1878 IQARSSLGSPARAYLEIPNPRYLGPAISSGAIYLA 1912
>sp|O14578|CTRO_HUMAN Citron Rho-interacting kinase OS=Homo sapiens GN=CIT PE=1 SV=2
Length = 2027
Score = 36.6 bits (83), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 14 SPGKRESVFSDMMENIGVFVDQNGKLLQADRICWSEAPIAVIIQKPY 60
S G+RE E GVFVD G+ + D + WS P+A ++PY
Sbjct: 1793 SAGQREEYLLCFHE-FGVFVDSYGRRSRTDDLKWSRLPLAFAYREPY 1838
>sp|Q6DT37|MRCKG_HUMAN Serine/threonine-protein kinase MRCK gamma OS=Homo sapiens
GN=CDC42BPG PE=1 SV=2
Length = 1551
Score = 35.4 bits (80), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 30 GVFVDQNGKLLQADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNV 89
G++VD G+ + + W AP+ PY ++V +R +QT+ L+ V
Sbjct: 1298 GIYVDGAGRKSRGHELLWPAAPMGWGYAAPYLTVFSENSIDVFDVRR-AEWVQTVPLKKV 1356
Query: 90 RHLIPSSNAVVVALEN 105
R L P + + E
Sbjct: 1357 RPLNPEGSLFLYGTEK 1372
>sp|Q5UQC0|YL226_MIMIV Uncharacterized protein L226 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L226 PE=4 SV=1
Length = 690
Score = 35.0 bits (79), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 92/206 (44%), Gaps = 32/206 (15%)
Query: 342 GLNYCDVKICEEILQK--------KNHYTALLELYKSNARHREALKLLHELVEESKSN-- 391
GLN +C+ ++QK N+ L+ LY N E L + +E K +
Sbjct: 140 GLNSGKFNLCDVLIQKGIEYKCTDHNYGRPLIVLYPDNGEIEEIYLYLLKNMEHFKDDFV 199
Query: 392 ---QSQDEHTQKFNP-ESIIEYLKPLCGTDPMLVLEFSMLVLE-SCPTQTIELFLSGNIP 446
Q+ E + +F+ +S IEY + C P+ LE S+ +++ T+ I+LF I
Sbjct: 200 KIIQAVTEDSYEFDVLKSYIEYAQ--CTNIPINYLEISINIIKIHHKTECIKLF----IE 253
Query: 447 ADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKW 506
LVN+ Q + E L ++ ++G L ++ V+ S+V L + +
Sbjct: 254 MGLVNA---------QDIFYESCLHFSD--LTGYLVDQGVEFNFSDVFSLDLPLDTLEYF 302
Query: 507 DEKAYSPTRKKLLSALESISGYNPEV 532
EK + PT + +++ L + P++
Sbjct: 303 TEKGFEPTDEMIVNKLNDSNKSTPKI 328
>sp|Q9EPX2|PPN_MOUSE Papilin OS=Mus musculus GN=Papln PE=2 SV=2
Length = 1280
Score = 35.0 bits (79), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 11/77 (14%)
Query: 413 LCGTDPMLVLEFSMLVLESCPTQTIELFLSGNIPADLVNSYLKQYSPSMQGRYLELMLAM 472
L G++P LV ++ P Q ++LF GNIP++ + K+ P RY L
Sbjct: 906 LAGSEPSLV--------QAAPGQAVQLFCPGNIPSEFQAGWQKEGRPISSNRY---QLQA 954
Query: 473 NENSISGNLQNEMVQIY 489
+ + I L+ E IY
Sbjct: 955 DGSLIISRLRPEDAGIY 971
>sp|Q54EH3|Y1510_DICDI GTPase-activating protein DDB_G0291510 OS=Dictyostelium discoideum
GN=DDB_G0291510 PE=4 SV=1
Length = 1031
Score = 34.3 bits (77), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 26 MENIGVFVDQNGKLLQADRICWSEAPIAVIIQKPYAIALLPRRVEVRSL 74
NIG+FVD++G + + W P ++ + Y + + +EVR+L
Sbjct: 809 FNNIGIFVDESGNKTRQFELKWGSTPSSLALVPSYVLGISGPLIEVRTL 857
>sp|Q66K99|GTDC1_XENTR Glycosyltransferase-like domain-containing protein 1 OS=Xenopus
tropicalis GN=gtdc1 PE=2 SV=1
Length = 437
Score = 34.3 bits (77), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 191 IVLPKTTVVPEPERLLDISSDAPSLSRGSSGMSDDMESSPPAQLSELDENATLKSKKMSH 250
I+ PK V+ P DIS P R S ++D+M S + + A S + SH
Sbjct: 155 IIRPKCCVLYFPMTFPDISQFLPEHKRVSHTLADNMSSMDISHCPKTSLQAENMSVEFSH 214
Query: 251 NTLMALI--KFLQKKRSSIIEKATAEGTEEVVLDA 283
+ + + I +++R++I EK + V+L+A
Sbjct: 215 DQIQSSIGESSAEQERATISEKNICASGDPVILNA 249
>sp|P38959|VPS41_YEAST Vacuolar protein sorting-associated protein 41 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS41 PE=1
SV=2
Length = 992
Score = 33.9 bits (76), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 515 RKKLLSALESISGYNPEVLLKRLPAD-ALYEERAILLGKMNQHELALSLYVHKLCVPELA 573
R+ LL L+ + YN E ++ + LY E L GK+ + + ALSL + +L P+LA
Sbjct: 813 RQSLLPFLQKHNNYNVESAIEVCSSKLGLYNELIYLWGKIGETKKALSLIIDELKNPQLA 872
Query: 574 LAYC 577
+ +
Sbjct: 873 IDFV 876
>sp|Q037U3|THIT_LACC3 Thiamine transporter ThiT OS=Lactobacillus casei (strain ATCC 334)
GN=thiT PE=1 SV=1
Length = 201
Score = 33.5 bits (75), Expect = 7.5, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 14/135 (10%)
Query: 53 AVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIPSSNAVVVALENSIFGLFP 112
A+I A+ +P V ++ + Y LI VL R L+P+ A ++G+
Sbjct: 14 AIIAAFAMALTYIPHTTGVSAIELNYGLIPIAVLAMRRGLVPA------AWAGFVWGILD 67
Query: 113 VPL-----GAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFD---T 164
+ L G+ + L ++ A L L+ AS + A GS ++ + Y F
Sbjct: 68 LILRGIGGGSVLNPLQGILEYPIAFTLVGLMGLTFASFQKAVRGSEKVKASGYAFAGIII 127
Query: 165 GSYEEAMEHFLASQV 179
G++ + HF+A V
Sbjct: 128 GTFAKYFIHFIAGVV 142
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 276,942,251
Number of Sequences: 539616
Number of extensions: 11177646
Number of successful extensions: 35094
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 35015
Number of HSP's gapped (non-prelim): 77
length of query: 816
length of database: 191,569,459
effective HSP length: 126
effective length of query: 690
effective length of database: 123,577,843
effective search space: 85268711670
effective search space used: 85268711670
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)