Query 003482
Match_columns 816
No_of_seqs 183 out of 776
Neff 8.2
Searched_HMMs 29240
Date Tue Mar 26 18:20:48 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003482.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1530-1533//hhsearch_pdb/003482hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xi4_A Clathrin heavy chain; a 1.0 1 1 90.3 30.0 82 516-608 1038-1119(1630)
2 1xi4_A Clathrin heavy chain; a 1.0 1 1 89.1 27.3 45 445-491 840-885 (1630)
3 3lvg_A Clathrin heavy chain 1; 1.0 1 1 84.7 -11.0 292 318-737 264-562 (624)
4 3lvg_A Clathrin heavy chain 1; 1.0 1 1 81.3 0.6 205 318-565 117-329 (624)
5 1b89_A Protein (clathrin heavy 1.0 1 1 76.2 19.7 365 119-739 9-395 (449)
6 1b89_A Protein (clathrin heavy 1.0 1 1 63.2 21.7 200 318-556 242-448 (449)
7 1v87_A Deltex protein 2; ring- 1.0 1 1 29.7 -0.1 35 766-801 23-73 (114)
8 1x4j_A Ring finger protein 38; 1.0 1 1 29.3 1.9 35 766-801 21-56 (75)
9 2l0b_A E3 ubiquitin-protein li 1.0 1 1 28.8 1.6 34 766-800 38-72 (91)
10 2ep4_A Ring finger protein 24; 1.0 1 1 28.7 2.4 37 764-801 11-48 (74)
No 1
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=1.00 E-value=1 Score=90.33 Aligned_cols=82 Identities=12% Similarity=0.283 Sum_probs=62.8
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99999975308999578960089985038999997200209999999999509978999999986010358999999764
Q 003482 516 KKLLSALESISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKLCVPELALAYCDRVYESIAHQPSGKSSGN 595 (816)
Q Consensus 516 ~kL~~fL~~s~~Yd~~~~L~~i~~~~l~~E~aiL~~rlg~h~~AL~ilv~~L~D~~~Ae~YC~~~~~~~~~~~~~~~~~~ 595 (816)
.+.+.++.....|+...+-..+...++++|-+.+|.|.+.+.+|+.+++..+++++.|.+|+.++. .+.
T Consensus 1038 ~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn-----------~p~ 1106 (1630)
T 1xi4_A 1038 TRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCN-----------EPA 1106 (1630)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CHH
T ss_conf 559999987412369999999985898999999999808879999999999863999999998548-----------887
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 7999999854999
Q 003482 596 IYLTLLQIYLNPR 608 (816)
Q Consensus 596 l~~~Ll~~yl~~~ 608 (816)
+|..+-+.++...
T Consensus 1107 vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1107 VWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999998479
No 2
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=1.00 E-value=1 Score=89.07 Aligned_cols=45 Identities=13% Similarity=0.204 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHCC-HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 89678999984109-201888999988610277780149999999999
Q 003482 445 IPADLVNSYLKQYS-PSMQGRYLELMLAMNENSISGNLQNEMVQIYLS 491 (816)
Q Consensus 445 l~~~~Vl~~L~~~~-~~l~~~YLE~li~~~~~~~~~~~h~~L~~lYl~ 491 (816)
+|.+.+++..++.+ -.+...+||.-+.. +..++.+||-|+..||+
T Consensus 840 ~~~~~lv~~~ekrnrLkll~p~LE~~~~~--g~~~~~~hnalakiyid 885 (1630)
T 1xi4_A 840 FSTDELVAEVEKRNRLKLLLPWLEARIHE--GCEEPATHNALAKIYID 885 (1630)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHC
T ss_conf 99799999999887798889999999867--89888999999999853
No 3
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=1.00 E-value=1 Score=84.75 Aligned_cols=292 Identities=14% Similarity=0.168 Sum_probs=209.9
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHCC-CCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9999999999943990268865137-995158999999986398799999999800599999999998740017877321
Q 003482 318 ILDTALLQALLLTGQSSAALELLKG-LNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDE 396 (816)
Q Consensus 318 ~vDT~Llk~yl~~~~~~~l~~ll~~-~n~c~~~~~~~~L~~~~~~~~L~~Ly~~~g~~~~AL~ll~~l~~~~~~d~~~~~ 396 (816)
.+=|-|--+|.+.++ +++.+-++. -..+++.-+...+++.+.|.+|+.||..-..++.|......-....
T Consensus 264 GmFTELaILYsKY~P-eKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~A-------- 334 (624)
T 3lvg_A 264 GMFTELAILYSKFKP-QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDA-------- 334 (624)
T ss_dssp HHHHHHHHHHHSSCT-THHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHH--------
T ss_pred HHHHHHHHHHHHCCH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHH--------
T ss_conf 899999999982588-99999999999750478999999997628999999961013789999998088532--------
Q ss_pred CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCHHHHHHHHHHCC-HHHHHHHHHHHHHHH
Q ss_conf 0036893789997201699985889995786542086231012344--7889678999984109-201888999988610
Q 003482 397 HTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLS--GNIPADLVNSYLKQYS-PSMQGRYLELMLAMN 473 (816)
Q Consensus 397 ~~~~~~~~~~i~yL~~L~~~~~~li~~~~~wll~~~p~~~i~if~~--~~l~~~~Vl~~L~~~~-~~l~~~YLE~li~~~ 473 (816)
+.++...+.+.+. .+.++.++-..+-++..|..-..+++. ..++..+|+.++...+ -.+...||+.+-..
T Consensus 335 ----w~h~~Fkdii~KV--aN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~- 407 (624)
T 3lvg_A 335 ----WKEGQFKDIITKV--ANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNH- 407 (624)
T ss_dssp ----CCGGGGTTTGGGC--SCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCS-
T ss_pred ----CCHHHHHHHHHHC--CHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH-
T ss_conf ----0578999999971--038999999999998484889999986021378099999999648836649999999986-
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHH---HHHHHH
Q ss_conf 27778014999999999999977433222101372101187999999975308999578960089985038---999997
Q 003482 474 ENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPADALYE---ERAILL 550 (816)
Q Consensus 474 ~~~~~~~~h~~L~~lYl~~i~~~~~~~~~~~~~~~~~~~~~r~kL~~fL~~s~~Yd~~~~L~~i~~~~l~~---E~aiL~ 550 (816)
....+-.-|-.+|++. + ....|..-++.-..||.-.+-.+++.+.+.+ --|+||
T Consensus 408 ---N~~aVNeAln~L~IEE----------------E----Dy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LY 464 (624)
T 3lvg_A 408 ---NNKSVNESLNNLFITE----------------E----DYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLF 464 (624)
T ss_dssp ---CCHHHHHHHHHHHHHT----------------T----CCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHH----------------H----HHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf ---3799999999998605----------------1----5899999998733646899999885180589999999999
Q ss_pred HHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 20020999999999950997899999998601035899999976479999998549997750234433200367788888
Q 003482 551 GKMNQHELALSLYVHKLCVPELALAYCDRVYESIAHQPSGKSSGNIYLTLLQIYLNPRRTTKNFEKQITNLVSSQNTTIP 630 (816)
Q Consensus 551 ~rlg~h~~AL~ilv~~L~D~~~Ae~YC~~~~~~~~~~~~~~~~~~l~~~Ll~~yl~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (816)
.|-+++.+++.+.- +-+-++-|++++... .+.++-..||+.+++..
T Consensus 465 kkn~rw~qsi~l~K-kDklykDAietAa~S-----------~~~elaeeLL~yFv~~g---------------------- 510 (624)
T 3lvg_A 465 KGNNRWKQSVELCK-KDSLYKDAMQYASES-----------KDTELAEELLQWFLQEE---------------------- 510 (624)
T ss_dssp HTTCHHHHHSSCSS-TTCCTTGGGTTTTTC-----------CCTTHHHHHHHHHHHHC----------------------
T ss_pred HHCCCHHHHHHHHH-HCCCHHHHHHHHHHC-----------CCHHHHHHHHHHHHHCC----------------------
T ss_conf 85240899999997-115489999999973-----------99789999999999738----------------------
Q ss_pred CCCCCCCEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCHHHHHHHHHHCCCCCCHHHHHHCC
Q ss_conf 88875410004886520012100011135799988899999985433335871230999999981015999987884019
Q 003482 631 KAGSVTAVKVKGGRTTKKIASIEGAEDMRMSPSSTDSGRSDGDAEEFSEEGDSTIMIDQVLDLLSQRWDRINGAQALKLL 710 (816)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~~ld~~~vL~lL 710 (816)
. .+.....|-...+.+.|-.||++-
T Consensus 511 ---------------------------------------------------~----~EcF~a~LytCYdLlrpDvVlEla 535 (624)
T 3lvg_A 511 ---------------------------------------------------K----RECFGACLFTCYDLLRPDVVLETA 535 (624)
T ss_dssp ---------------------------------------------------S----THHHHHHHHHTSSSSSCHHHHHHH
T ss_pred ---------------------------------------------------C----HHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf ---------------------------------------------------6----589999999986225807999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 986454306999999999579999899
Q 003482 711 PRETKLQNLLPFLEPLLRKSSEAHRNL 737 (816)
Q Consensus 711 P~~~~l~~l~~fL~~~lr~~~~~~r~~ 737 (816)
=-+--+.-..||+.+.+|+.+.+....
T Consensus 536 W~~~l~D~~mPY~Iq~~re~~~kv~~L 562 (624)
T 3lvg_A 536 WRHNIMDFAMPYFIQVMKEYLTKVDKL 562 (624)
T ss_dssp HHSCSSSCCCCSSTTTTTTHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 985153302325899999999999999
No 4
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=1.00 E-value=1 Score=81.27 Aligned_cols=205 Identities=16% Similarity=0.170 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999999999439902688651379951589999999863987999999998005999999999987400178773210
Q 003482 318 ILDTALLQALLLTGQSSAALELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDEH 397 (816)
Q Consensus 318 ~vDT~Llk~yl~~~~~~~l~~ll~~~n~c~~~~~~~~L~~~~~~~~L~~Ly~~~g~~~~AL~ll~~l~~~~~~d~~~~~~ 397 (816)
.|||.|+-||.++++-..+.+|++++|.-++..+-+.|-+.+.|.+.-.||..-.++.+--.++..|.+-.
T Consensus 117 ~IDteLi~ayAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq--------- 187 (624)
T 3lvg_A 117 YVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQ--------- 187 (624)
T ss_dssp TTTHHHHHHHHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGG---------
T ss_pred CCHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------
T ss_conf 01899999998617578999997599824388899999883688999999996763899999999998889---------
Q ss_pred CCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHH-----CCCCCCCCCCC-CCCCHHHHHHHHHHC-CHHHHHHHHHHHH
Q ss_conf 0368937899972016999858899957865420-----86231012344-788967899998410-9201888999988
Q 003482 398 TQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLES-----CPTQTIELFLS-GNIPADLVNSYLKQY-SPSMQGRYLELML 470 (816)
Q Consensus 398 ~~~~~~~~~i~yL~~L~~~~~~li~~~~~wll~~-----~p~~~i~if~~-~~l~~~~Vl~~L~~~-~~~l~~~YLE~li 470 (816)
.+++--++- .....+.+-..--++. ....|+.|.+. |.++ .++.+-+.. .-+-++.-||.-+
T Consensus 188 -------~AVdaArKA--ns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~--elv~~YE~~G~f~ELIsLlEagl 256 (624)
T 3lvg_A 188 -------AAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELE--ELINYYQDRGYFEELITMLEAAL 256 (624)
T ss_dssp -------SSTTTTTTC--CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCS--GGGSSSSTTCCCTTSTTTHHHHT
T ss_pred -------HHHHHHHHC--CCHHHHHHHHHHHHCCHHHHHHHHHCCHHCCCHHHHH--HHHHHHHHCCCHHHHHHHHHHHH
T ss_conf -------999999864--8902799999998473188999982632023588899--99999996798899999999774
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH-HCCCCHHHHHCCCCCCCHHHHHHHH
Q ss_conf 610277780149999999999999774332221013721011879999999753-0899957896008998503899999
Q 003482 471 AMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALES-ISGYNPEVLLKRLPADALYEERAIL 549 (816)
Q Consensus 471 ~~~~~~~~~~~h~~L~~lYl~~i~~~~~~~~~~~~~~~~~~~~~r~kL~~fL~~-s~~Yd~~~~L~~i~~~~l~~E~aiL 549 (816)
... ...-.+.|+|+.+|-.. ..+||+..|+. ++..+..++++.|+...+|.|.++|
T Consensus 257 glE--rAHmGmFTELaILYsKY---------------------~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfL 313 (624)
T 3lvg_A 257 GLE--RAHMGMFTELAILYSKF---------------------KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFL 313 (624)
T ss_dssp TST--TCCHHHHHHHHHHHHSS---------------------CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHH
T ss_pred CCC--CHHHHHHHHHHHHHHHC---------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 787--30678999999999825---------------------8899999999999750478999999997628999999
Q ss_pred HHHCCCHHHHHHHHHH
Q ss_conf 7200209999999999
Q 003482 550 LGKMNQHELALSLYVH 565 (816)
Q Consensus 550 ~~rlg~h~~AL~ilv~ 565 (816)
|.+-.+++.|....+.
T Consensus 314 Y~~ydE~DnA~ltMi~ 329 (624)
T 3lvg_A 314 YDKYEEYDNAIITMMN 329 (624)
T ss_dssp HHHHTCHHHHHHTTTS
T ss_pred HHCCHHHHHHHHHHHH
T ss_conf 9610137899999980
No 5
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=1.00 E-value=1 Score=76.18 Aligned_cols=365 Identities=16% Similarity=0.226 Sum_probs=223.7
Q ss_pred HHHHHHC-CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 9999954-998999999633899415777752989999999997607898999999997299988998738998789888
Q 003482 119 IVQLTAS-GDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSIVLPKTT 197 (816)
Q Consensus 119 I~~Ll~~-~~~eeAl~L~~~~~~e~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~~~dPr~vi~LfP~l~~~~~~ 197 (816)
|+.|+++ |.+++|...++.+++. .+...-|-.+...++|++|.+.|.++. +|..+.
T Consensus 9 ~~~ll~~~~~ld~A~~fae~~~~~----------~vWs~La~A~l~~g~~~eAIdsfika~---------D~~~y~---- 65 (449)
T 1b89_A 9 VQVLIEHIGNLDRAYEFAERCNEP----------AVWSQLAKAQLQKGMVKEAIDSYIKAD---------DPSSYM---- 65 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCH----------HHHHHHHHHHHHCCCHHHHHHHHHCCC---------CHHHHH----
T ss_conf 999999744799999999859986----------799999999987699899999998089---------879999----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 88897211135899988788999998889999977887411355543224359999999999999968899862016833
Q 003482 198 VVPEPERLLDISSDAPSLSRGSSGMSDDMESSPPAQLSELDENATLKSKKMSHNTLMALIKFLQKKRSSIIEKATAEGTE 277 (816)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~le~~~~~~~a~~~L~~yL~~~R~~~~~~~~~~~~~ 277 (816)
. +.... . . ......++.||...|+..
T Consensus 66 ---------~--------------V~~~a-----e--------------~--~g~~EeAi~yl~~ark~~---------- 91 (449)
T 1b89_A 66 ---------E--------------VVQAA-----N--------------T--SGNWEELVKYLQMARKKA---------- 91 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------H--------------HHHHH-----H--------------H--CCCHHHHHHHHHHHHHHC----------
T ss_conf ---------9--------------99999-----8--------------6--798999999999998748----------
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCH---------
Q ss_conf 57641026887778742001268998987773107899999999999999943990268865137995158---------
Q 003482 278 EVVLDAVGDNFTSHDSTRFKKSSKGRGTIPMYSGAREMAAILDTALLQALLLTGQSSAALELLKGLNYCDV--------- 348 (816)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDT~Llk~yl~~~~~~~l~~ll~~~n~c~~--------- 348 (816)
+. ..|||.|..||.++++-..+..|++.+|....
T Consensus 92 -----------------------------------~~--~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~ 134 (449)
T 1b89_A 92 -----------------------------------RE--SYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYD 134 (449)
T ss_dssp ------------------------------------------------------CHHHHTTTTTCC--------------
T ss_pred -----------------------------------CC--CHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf -----------------------------------41--02579999999981999999998849968999999999987
Q ss_pred ----HHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf ----9999999863987999999998005999999999987400178773210036893789997201699985889995
Q 003482 349 ----KICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKFNPESIIEYLKPLCGTDPMLVLEF 424 (816)
Q Consensus 349 ----~~~~~~L~~~~~~~~L~~Ly~~~g~~~~AL~ll~~l~~~~~~d~~~~~~~~~~~~~~~i~yL~~L~~~~~~li~~~ 424 (816)
+++.....+...|..|+..+...|++.+|++...+..+ +..| ..+..-... ..+.++-..
T Consensus 135 ~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~~--------~~~W-----k~v~~aCv~--~~ef~lA~~- 198 (449)
T 1b89_A 135 EKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS--------TRTW-----KEVCFACVD--GKEFRLAQM- 198 (449)
T ss_dssp --CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTC--------HHHH-----HHHHHHHHH--TTCHHHHHH-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC--------CHHH-----HHHHHHHHH--CCCHHHHHH-
T ss_conf 188999999999765699999999986459999999998189--------5659-----999999998--084899999-
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCHH---HHHHHHHHC-CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 786542086231012344788967---899998410-9201888999988610277780149999999999999774332
Q 003482 425 SMLVLESCPTQTIELFLSGNIPAD---LVNSYLKQY-SPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDL 500 (816)
Q Consensus 425 ~~wll~~~p~~~i~if~~~~l~~~---~Vl~~L~~~-~~~l~~~YLE~li~~~~~~~~~~~h~~L~~lYl~~i~~~~~~~ 500 (816)
.++.|. +.|+ .++.+.... .-.-++.|||..+... .....+-++|+.+|...
T Consensus 199 ----------~~l~L~----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le--~ah~~~ftel~il~~ky-------- 254 (449)
T 1b89_A 199 ----------CGLHIV----VHADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKF-------- 254 (449)
T ss_dssp ----------TTTTTT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST--TCCHHHHHHHHHHHHTT--------
T ss_pred ----------HHHHHH----HCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHC--------
T ss_conf ----------899998----487669999999998889999999999986775--87999998899999705--------
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHH-HCCCCHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCC---HHHHHHH
Q ss_conf 221013721011879999999753-089995789600899850389999972002099999999995099---7899999
Q 003482 501 SAQQKWDEKAYSPTRKKLLSALES-ISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKLCV---PELALAY 576 (816)
Q Consensus 501 ~~~~~~~~~~~~~~r~kL~~fL~~-s~~Yd~~~~L~~i~~~~l~~E~aiL~~rlg~h~~AL~ilv~~L~D---~~~Ae~Y 576 (816)
..+|++..|+. ++..+..++++.|..-.++.|.++||-.-++++.|+.+++....+ .+.=.+-
T Consensus 255 -------------~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~ 321 (449)
T 1b89_A 255 -------------KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDI 321 (449)
T ss_dssp -------------CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHH
T ss_pred -------------CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf -------------9899999999999986675787888779899999999981123999999998587643226889999
Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHCCCC
Q ss_conf 99860103589999997647999999854999775023443320036778888888875410004886520012100011
Q 003482 577 CDRVYESIAHQPSGKSSGNIYLTLLQIYLNPRRTTKNFEKQITNLVSSQNTTIPKAGSVTAVKVKGGRTTKKIASIEGAE 656 (816)
Q Consensus 577 C~~~~~~~~~~~~~~~~~~l~~~Ll~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 656 (816)
+.++. ..++|-..+..|+...
T Consensus 322 ~~kv~-----------n~elyYkai~fyl~~~------------------------------------------------ 342 (449)
T 1b89_A 322 ITKVA-----------NVELYYRAIQFYLEFK------------------------------------------------ 342 (449)
T ss_dssp HHHCS-----------STHHHHHHHHHHHHHC------------------------------------------------
T ss_pred HHCHH-----------HHHHHHHHHHHHHHCC------------------------------------------------
T ss_conf 82626-----------7899999999998418------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHCHHHHHHHHHHCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13579998889999998543333587123099999998101599998788401998645430699999999957999989
Q 003482 657 DMRMSPSSTDSGRSDGDAEEFSEEGDSTIMIDQVLDLLSQRWDRINGAQALKLLPRETKLQNLLPFLEPLLRKSSEAHRN 736 (816)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~~ld~~~vL~lLP~~~~l~~l~~fL~~~lr~~~~~~r~ 736 (816)
+..+...+..| .+++|+..|+.++-..-.|+.+++||..+...+.....+
T Consensus 343 ---------------------------p~~l~~ll~~l---~~~ld~~r~v~~~~~~~~l~l~~~yl~~v~~~n~~~vne 392 (449)
T 1b89_A 343 ---------------------------PLLLNDLLMVL---SPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNE 392 (449)
T ss_dssp ---------------------------GGGHHHHHHHH---GGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTCCHHHHH
T ss_pred ---------------------------HHHHHHHHHHH---HHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf ---------------------------79899999987---752690999999997389287899999999863799999
Q ss_pred HHH
Q ss_conf 999
Q 003482 737 LSV 739 (816)
Q Consensus 737 ~~i 739 (816)
+-.
T Consensus 393 aln 395 (449)
T 1b89_A 393 SLN 395 (449)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 6
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=1.00 E-value=1 Score=63.21 Aligned_cols=200 Identities=14% Similarity=0.168 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHCC-CCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9999999999943990268865137-995158999999986398799999999800599999999998740017877321
Q 003482 318 ILDTALLQALLLTGQSSAALELLKG-LNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDE 396 (816)
Q Consensus 318 ~vDT~Llk~yl~~~~~~~l~~ll~~-~n~c~~~~~~~~L~~~~~~~~L~~Ly~~~g~~~~AL~ll~~l~~~~~~d~~~~~ 396 (816)
.+=|-|-.+|.+.++ ..+.+-++. -..+++.-+...+.+...|.+++.||...+.++.|...+.+-.. +
T Consensus 242 ~~ftel~il~~ky~p-~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~---------~ 311 (449)
T 1b89_A 242 GMFTELAILYSKFKP-QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPT---------D 311 (449)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTT---------T
T ss_pred HHHHHHHHHHHHCCH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCH---------H
T ss_conf 999889999970598-999999999999866757878887798999999999811239999999985876---------4
Q ss_pred CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCHHHHHHHHHHCC-HHHHHHHHHHHHHHH
Q ss_conf 0036893789997201699985889995786542086231012344--7889678999984109-201888999988610
Q 003482 397 HTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLS--GNIPADLVNSYLKQYS-PSMQGRYLELMLAMN 473 (816)
Q Consensus 397 ~~~~~~~~~~i~yL~~L~~~~~~li~~~~~wll~~~p~~~i~if~~--~~l~~~~Vl~~L~~~~-~~l~~~YLE~li~~~ 473 (816)
.+.++...+.+.+. .+.++.++-..+-++..|..--.+++. +.+++++|+.++...+ -.+...||+.+-..+
T Consensus 312 ---a~~~~~f~~~~~kv--~n~elyYkai~fyl~~~p~~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~yl~~v~~~n 386 (449)
T 1b89_A 312 ---AWKEGQFKDIITKV--ANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN 386 (449)
T ss_dssp ---TCCHHHHHHHHHHC--SSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC
T ss_pred ---HHHHHHHHHHHHCH--HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf ---32268899998262--6789999999999841879899999987752690999999997389287899999999863
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHH---HHHHHH
Q ss_conf 27778014999999999999977433222101372101187999999975308999578960089985038---999997
Q 003482 474 ENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPADALYE---ERAILL 550 (816)
Q Consensus 474 ~~~~~~~~h~~L~~lYl~~i~~~~~~~~~~~~~~~~~~~~~r~kL~~fL~~s~~Yd~~~~L~~i~~~~l~~---E~aiL~ 550 (816)
...+-.-|-.+||+. ...+.|..-+..-..||.-.+-.+++.+.+.+ --|+||
T Consensus 387 ----~~~vnealn~l~iee--------------------ed~~~lr~si~~~~nfd~~~l~~~le~h~l~~~r~iaa~~~ 442 (449)
T 1b89_A 387 ----NKSVNESLNNLFITE--------------------EDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLF 442 (449)
T ss_dssp ----CHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHCCCSCHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf ----799999999998714--------------------25999999998743757999998874382489999999998
Q ss_pred HHCCCH
Q ss_conf 200209
Q 003482 551 GKMNQH 556 (816)
Q Consensus 551 ~rlg~h 556 (816)
.|-+++
T Consensus 443 ~~~~~~ 448 (449)
T 1b89_A 443 KGNNRW 448 (449)
T ss_dssp C-----
T ss_pred HHCCCC
T ss_conf 755578
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=1.00 E-value=1 Score=29.70 Aligned_cols=35 Identities=17% Similarity=0.441 Sum_probs=26.7
Q ss_pred CCCCCCCCCCCCCCCC----------------EEEECCCCCEEEEECCCCCC
Q ss_conf 9987478577854784----------------48991699869986567784
Q 003482 766 TSDSMCSLCSKKIGTS----------------VFAVYPNGKTIVHFVCFRDS 801 (816)
Q Consensus 766 ~~~~~C~vC~k~lg~~----------------~f~v~p~g~~v~H~~C~~~~ 801 (816)
..+..|++|...+... +....||| |+||..|+..-
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-H~Fh~~Ci~~w 73 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCS-HAFHLLCLLAM 73 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSC-CEECHHHHHHH
T ss_pred CCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCEECCCCC-CCCCHHHHHHH
T ss_conf 9999684078100374443332223455752135229979-96049999999
No 8
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=29.31 Aligned_cols=35 Identities=17% Similarity=0.467 Sum_probs=28.3
Q ss_pred CCCCCCCCCCCCCCCC-EEEECCCCCEEEEECCCCCC
Q ss_conf 9987478577854784-48991699869986567784
Q 003482 766 TSDSMCSLCSKKIGTS-VFAVYPNGKTIVHFVCFRDS 801 (816)
Q Consensus 766 ~~~~~C~vC~k~lg~~-~f~v~p~g~~v~H~~C~~~~ 801 (816)
.++..|++|...+... .+.+.||| |+||..|+..-
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~-H~fh~~Ci~~w 56 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCN-HEFHAKCVDKW 56 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTT-EEEETTHHHHH
T ss_pred CCCCCCEECCCCCCCCCEEEEECCC-CHHHHHHHHHH
T ss_conf 7999893889352799869987899-87579999999
No 9
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=28.82 Aligned_cols=34 Identities=18% Similarity=0.348 Sum_probs=27.5
Q ss_pred CCCCCCCCCCCCCCCC-EEEECCCCCEEEEECCCCC
Q ss_conf 9987478577854784-4899169986998656778
Q 003482 766 TSDSMCSLCSKKIGTS-VFAVYPNGKTIVHFVCFRD 800 (816)
Q Consensus 766 ~~~~~C~vC~k~lg~~-~f~v~p~g~~v~H~~C~~~ 800 (816)
.++..|++|...+... ...+.||| |+||..|+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~-H~Fh~~Ci~~ 72 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCH-HYFHKPCVSI 72 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTT-EEEEHHHHHH
T ss_pred CCCCCCCCCCHHHCCCCCEEECCCC-CHHHHHHHHH
T ss_conf 8999884369021589827962799-9489999999
No 10
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=28.65 Aligned_cols=37 Identities=14% Similarity=0.428 Sum_probs=29.6
Q ss_pred EECCCCCCCCCCCCCCCC-EEEECCCCCEEEEECCCCCC
Q ss_conf 979987478577854784-48991699869986567784
Q 003482 764 KITSDSMCSLCSKKIGTS-VFAVYPNGKTIVHFVCFRDS 801 (816)
Q Consensus 764 ~I~~~~~C~vC~k~lg~~-~f~v~p~g~~v~H~~C~~~~ 801 (816)
.+.++..|++|...+... .+.+.||| |+||..|+..-
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~-H~f~~~Ci~~~ 48 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCK-HAFHRKCLIKW 48 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTT-EEEEHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCC-CEECHHHHHHH
T ss_conf 689999895779201799727870899-98549999999
Done!