BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003485
(816 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BT14|CNOT4_MOUSE CCR4-NOT transcription complex subunit 4 OS=Mus musculus GN=Cnot4
PE=1 SV=2
Length = 575
Score = 216 bits (549), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 107/255 (41%), Positives = 159/255 (62%), Gaps = 14/255 (5%)
Query: 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CWH I + + G CPACR PY ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AAKCERLVAEISMERKMKSQKSKTKSSEGKKQQLSSVRVIQRNLVYIVGLPLNLGDEDLL 128
E L I E+K K + K K SE +K L+SVRV+Q+NLV++VGL L D ++L
Sbjct: 69 PLSQEEL-QRIKNEKKQKQNERKQKISENRKH-LASVRVVQKNLVFVVGLSQRLADPEVL 126
Query: 129 QRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188
+R EYFG++GK+ KV ++ + + Q P + S Y+TY + E+A+R IQ V+ V++G+
Sbjct: 127 KRPEYFGKFGKIHKVVINNSTSYAGSQGP--SASAYVTYIRSEDALRAIQCVNNVVVDGR 184
Query: 189 SLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISA----YTRSRVQQI 244
+LKA GTTKYC +L+N+ C PDC+YLHE+G + SFTK+E+ + Y + +Q++
Sbjct: 185 TLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLLQEL 244
Query: 245 TGTTNN-LQRRSGNV 258
N LQ +G+V
Sbjct: 245 YKLNPNFLQLSTGSV 259
>sp|O95628|CNOT4_HUMAN CCR4-NOT transcription complex subunit 4 OS=Homo sapiens GN=CNOT4
PE=1 SV=3
Length = 575
Score = 216 bits (549), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 107/255 (41%), Positives = 159/255 (62%), Gaps = 14/255 (5%)
Query: 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CWH I + + G CPACR PY ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AAKCERLVAEISMERKMKSQKSKTKSSEGKKQQLSSVRVIQRNLVYIVGLPLNLGDEDLL 128
E L I E+K K + K K SE +K L+SVRV+Q+NLV++VGL L D ++L
Sbjct: 69 PLSQEEL-QRIKNEKKQKQNERKQKISENRKH-LASVRVVQKNLVFVVGLSQRLADPEVL 126
Query: 129 QRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188
+R EYFG++GK+ KV ++ + + Q P + S Y+TY + E+A+R IQ V+ V++G+
Sbjct: 127 KRPEYFGKFGKIHKVVINNSTSYAGSQGP--SASAYVTYIRSEDALRAIQCVNNVVVDGR 184
Query: 189 SLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISA----YTRSRVQQI 244
+LKA GTTKYC +L+N+ C PDC+YLHE+G + SFTK+E+ + Y + +Q++
Sbjct: 185 TLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLLQEL 244
Query: 245 TGTTNN-LQRRSGNV 258
N LQ +G+V
Sbjct: 245 YKLNPNFLQLSTGSV 259
>sp|P34909|NOT4_YEAST General negative regulator of transcription subunit 4
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=MOT2 PE=1 SV=1
Length = 587
Score = 202 bits (513), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 105/267 (39%), Positives = 157/267 (58%), Gaps = 30/267 (11%)
Query: 1 MSDEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPY 60
+S++ E CPLC E MD+TD+ PC CGY+IC +C+++I + E GRCPACR Y
Sbjct: 25 LSEDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIR---QNPELNGRCPACRRKY 81
Query: 61 DKEKIVGMAAKCERLVAE-ISMERKMKSQKSKTKSSE----GKKQQLSSVRVIQRNLVYI 115
D E + + E L E + RK K +K + K + ++ LS RVIQ+NLVY+
Sbjct: 82 DDENVRYVTLSPEELKMERAKLARKEKERKHREKERKENEYTNRKHLSGTRVIQKNLVYV 141
Query: 116 VGLPLNLGDEDL---LQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCS---------- 162
VG+ + E++ L+ +YFGQYGK+ K+ ++R NNT S
Sbjct: 142 VGINPPVPYEEVAPTLKSEKYFGQYGKINKIVVNRKTP-----HSNNTTSEHYHHHSPGY 196
Query: 163 -VYITYSKEEEAVRCIQSVHGFVLEGKSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVG 221
VYIT+ +++A RCI V G ++G+ +KA +GTTKYC ++LR +PC NP+C++LHE G
Sbjct: 197 GVYITFGSKDDAARCIAQVDGTYMDGRLIKAAYGTTKYCSSYLRGLPCPNPNCMFLHEPG 256
Query: 222 SQEDSFTKDEIISAYTRSRVQQITGTT 248
+ DSF K E+ + + + QQ +G T
Sbjct: 257 EEADSFNKREL---HNKQQAQQQSGGT 280
>sp|Q09818|YAC4_SCHPO Putative general negative regulator of transcription C16C9.04c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC16C9.04c PE=3 SV=1
Length = 489
Score = 179 bits (453), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 152/236 (64%), Gaps = 12/236 (5%)
Query: 3 DEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62
DE + CPLC EE+D++D+ KPC+CGY +C +CWHHI KE+ GRCPACR Y +
Sbjct: 12 DEDDMCCPLCMEEIDISDKNFKPCQCGYRVCRFCWHHI-----KEDLNGRCPACRRLYTE 66
Query: 63 EKIVGMAAKCERLVAEISMERKMKSQKSKTKSSE-GKKQQLSSVRVIQRNLVYIVGLPLN 121
E + E ++ + + K ++ + K E ++ L+++RV+Q+NL Y+ GL
Sbjct: 67 ENVQWRPVTAEEWKMDLHRKNERKKREKERKEVELSNRKHLANIRVVQKNLAYVNGLSPK 126
Query: 122 LGDED---LLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQ 178
+ +E+ +L+ EYFGQYGK++K+++++ AA N VYITY ++E+A R I
Sbjct: 127 VANEENINVLKGPEYFGQYGKIIKIAINKKAA---ANSANGHVGVYITYQRKEDAARAIA 183
Query: 179 SVHGFVLEGKSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIIS 234
++ G V +G+ L+A +GTTKYC ++LRN C NP C+YLHE G + DS+TK+++ S
Sbjct: 184 AIDGSVSDGRHLRASYGTTKYCTSYLRNQQCPNPSCMYLHEPGDEVDSYTKEDLAS 239
>sp|Q8BP71|RFOX2_MOUSE RNA binding protein fox-1 homolog 2 OS=Mus musculus GN=Rbfox2 PE=1
SV=2
Length = 449
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 26/127 (20%)
Query: 87 SQKSKTKSSEGKKQQLSSVRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMS 146
Q+S+T+SSE + + + R+ ++ +P D DL R+ FGQ+GK+L V +
Sbjct: 162 GQQSQTQSSENSESKSTPKRL------HVSNIPFRFRDPDL---RQMFGQFGKILDVEII 212
Query: 147 RTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKACFGT---------- 196
G + ++T+ +A R + +HG V+EG+ ++ T
Sbjct: 213 FNERG-------SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMV 265
Query: 197 TKYCHAW 203
T Y + W
Sbjct: 266 TPYANGW 272
>sp|A1A5R1|RFOX2_RAT RNA binding protein fox-1 homolog 2 OS=Rattus norvegicus GN=Rbfox2
PE=2 SV=1
Length = 432
Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 26/127 (20%)
Query: 87 SQKSKTKSSEGKKQQLSSVRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMS 146
Q+S+T+SSE + + + R+ ++ +P D DL R+ FGQ+GK+L V +
Sbjct: 145 GQQSQTQSSENSESKSTPKRL------HVSNIPFRFRDPDL---RQMFGQFGKILDVEII 195
Query: 147 RTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKACFGT---------- 196
G + ++T+ +A R + +HG V+EG+ ++ T
Sbjct: 196 FNERG-------SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMV 248
Query: 197 TKYCHAW 203
T Y + W
Sbjct: 249 TPYANGW 255
>sp|O43251|RFOX2_HUMAN RNA binding protein fox-1 homolog 2 OS=Homo sapiens GN=RBFOX2 PE=1
SV=3
Length = 390
Score = 43.1 bits (100), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 26/127 (20%)
Query: 87 SQKSKTKSSEGKKQQLSSVRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMS 146
Q+S+T+SSE + + + R+ ++ +P D DL R+ FGQ+GK+L V +
Sbjct: 103 GQQSQTQSSENSESKSTPKRL------HVSNIPFRFRDPDL---RQMFGQFGKILDVEII 153
Query: 147 RTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKACFGT---------- 196
G + ++T+ +A R + +HG V+EG+ ++ T
Sbjct: 154 FNERG-------SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMV 206
Query: 197 TKYCHAW 203
T Y + W
Sbjct: 207 TPYANGW 213
>sp|A6QPR6|RFOX2_BOVIN RNA binding protein fox-1 homolog 2 OS=Bos taurus GN=RBFOX2 PE=2
SV=2
Length = 394
Score = 42.7 bits (99), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 26/127 (20%)
Query: 87 SQKSKTKSSEGKKQQLSSVRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMS 146
Q+S+T+SSE + + + R+ ++ +P D DL R+ FGQ+GK+L V +
Sbjct: 111 GQQSQTQSSENSESKSTPKRL------HVSNIPFRFRDPDL---RQMFGQFGKILDVEII 161
Query: 147 RTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKACFGT---------- 196
G + ++T+ +A R + +HG V+EG+ ++ T
Sbjct: 162 FNERG-------SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMV 214
Query: 197 TKYCHAW 203
T Y + W
Sbjct: 215 TPYANGW 221
>sp|Q498L2|SLTM_XENLA SAFB-like transcription modulator OS=Xenopus laevis GN=sltm PE=2
SV=1
Length = 998
Score = 42.0 bits (97), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 9/104 (8%)
Query: 87 SQKSKTKSSEGKKQQLSSVRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMS 146
+++SK+ S E K S+ RNL ++ GL N DL + FG+YGKVL +
Sbjct: 322 AKESKSASKEDKGSTSSTSGSSTRNL-WVSGLSSNTKAADL---KNLFGKYGKVLSAKVV 377
Query: 147 RTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 190
A + P C +T S + RCI +H L G+ +
Sbjct: 378 TNA-----RSPGAKCYGIVTMSSSADVARCISHLHRTELHGQQI 416
>sp|Q3UIW5|RNF10_MOUSE RING finger protein 10 OS=Mus musculus GN=Rnf10 PE=2 SV=2
Length = 804
Score = 41.6 bits (96), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 59/146 (40%), Gaps = 24/146 (16%)
Query: 8 TCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVG 67
+CP+C K +CG+ C C H + ++EK T +CP C S K+ +
Sbjct: 224 SCPICL----YPPTAAKITRCGHIFCWACILHYLSLSEK--TWSKCPICYSSVHKKDLKS 277
Query: 68 MAAKCERLVAEISMERKMKSQKSKTKSSEGKKQQLSSVRVIQRNLVYIVGLPLNLGDEDL 127
+ A R A T + + K++ + + ++ V P+NLGDE L
Sbjct: 278 VVATESRQYA-----------VGDTITMQLMKREKGVLVALPKSKWVNVDHPINLGDEQL 326
Query: 128 LQRREYFGQYGKVLKVSMSRTAAGVI 153
QY K+L S + V+
Sbjct: 327 -------SQYSKLLLASKEQVLHRVV 345
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 41.2 bits (95), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 55/100 (55%), Gaps = 10/100 (10%)
Query: 93 KSSEGKKQQLSSVRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGV 152
KS ++ +L + R ++ +Y+ LP+++ DE LQ + F Q+GK+L V + R +G
Sbjct: 174 KSRREREAELGA-RALEFTNIYVKNLPVDV-DEQGLQ--DLFSQFGKMLSVKVMRDNSG- 228
Query: 153 IQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKA 192
++ C ++ + K EEA + + ++G + G+ L A
Sbjct: 229 -----HSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
>sp|Q95KI0|RFOX1_MACFA RNA binding protein fox-1 homolog 1 OS=Macaca fascicularis
GN=RBFOX1 PE=2 SV=1
Length = 376
Score = 40.8 bits (94), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 20/108 (18%)
Query: 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYS 168
Q +++ +P D DL R+ FGQ+GK+L V + G + ++T+
Sbjct: 117 QPKRLHVSNIPFRFRDPDL---RQMFGQFGKILDVEIIFNERG-------SKGFGFVTFE 166
Query: 169 KEEEAVRCIQSVHGFVLEGKSLKACFGTTK----------YCHAWLRN 206
+A R + +HG V+EG+ ++ T + Y + W N
Sbjct: 167 NSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLN 214
>sp|Q4PGG5|RAD5_USTMA DNA repair protein RAD5 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=RAD5 PE=3 SV=1
Length = 1387
Score = 40.8 bits (94), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 4 EGEKTCPLCAEEMDLTDQQLKPC---KCGYEICVWCWHHIMDMAEKEETEGRCPACR 57
+GE CP+C EE Q+ PC +C + C C + +++ +G CP CR
Sbjct: 1103 DGENECPICLEE-----SQISPCYLPRCMHSACKACLVDYLGQCKQKGDQGACPTCR 1154
>sp|Q1JQ73|ELV1A_XENLA ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-a PE=1 SV=1
Length = 337
Score = 40.4 bits (93), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 14/83 (16%)
Query: 121 NLG---DEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVY--ITYSKEEEAVR 175
NLG DE +L + FG +G V V VI+ F N C + +T + EEA
Sbjct: 261 NLGQDADEGILW--QMFGPFGAVTNVK-------VIRDFNTNKCKGFGFVTMTNYEEAAM 311
Query: 176 CIQSVHGFVLEGKSLKACFGTTK 198
I S++G+ L K+L+ F T+K
Sbjct: 312 AIASLNGYRLGDKTLQVSFKTSK 334
>sp|Q5NVN8|RFOX1_PONAB RNA binding protein fox-1 homolog 1 OS=Pongo abelii GN=RBFOX1 PE=2
SV=1
Length = 382
Score = 40.4 bits (93), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 20/108 (18%)
Query: 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYS 168
Q +++ +P D DL R+ FGQ+GK+L V + G + ++T+
Sbjct: 115 QPKRLHVSNIPFRFRDPDL---RQMFGQFGKILDVEIIFNERG-------SKGFGFVTFE 164
Query: 169 KEEEAVRCIQSVHGFVLEGKSLKACFGTTK----------YCHAWLRN 206
+A R + +HG V+EG+ ++ T + Y + W N
Sbjct: 165 NSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLN 212
>sp|Q642J5|RFOX1_DANRE RNA binding protein fox-1 homolog 1 OS=Danio rerio GN=rbfox1 PE=2
SV=1
Length = 373
Score = 40.4 bits (93), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 20/108 (18%)
Query: 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYS 168
Q +++ +P D DL R+ FGQ+GK+L V + G + ++T+
Sbjct: 117 QPKRLHVSNIPFRFRDPDL---RQMFGQFGKILDVEIIFNERG-------SKGFGFVTFE 166
Query: 169 KEEEAVRCIQSVHGFVLEGKSLKACFGTTK----------YCHAWLRN 206
+A R + +HG V+EG+ ++ T + Y + W N
Sbjct: 167 SSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYANGWKLN 214
>sp|Q6GLB5|ELAV1_XENTR ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1
Length = 326
Score = 40.4 bits (93), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 14/83 (16%)
Query: 121 NLG---DEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVY--ITYSKEEEAVR 175
NLG DE +L + FG +G V V VI+ F N C + +T + EEA
Sbjct: 250 NLGQDADEGILW--QMFGPFGAVTNVK-------VIRDFNTNKCKGFGFVTMTNYEEAAM 300
Query: 176 CIQSVHGFVLEGKSLKACFGTTK 198
I S++G+ L K+L+ F T+K
Sbjct: 301 AIASLNGYRLGDKTLQVFFKTSK 323
>sp|Q6DJI9|ZCRB1_XENLA Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Xenopus laevis GN=zcrb1 PE=2 SV=1
Length = 218
Score = 40.4 bits (93), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 18/88 (20%)
Query: 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSM-----SRTAAGVIQQFPNNTCSVY 164
++ VY+ LP +L + DL F +YGKV+KV++ SR + GV +
Sbjct: 9 KSTVYVSNLPFSLTNNDL---HRIFSKYGKVVKVTILKDKDSRKSKGV----------SF 55
Query: 165 ITYSKEEEAVRCIQSVHGFVLEGKSLKA 192
+ + +E A C++ ++ L G+++KA
Sbjct: 56 VLFLDKESAQNCVRGLNNKQLFGRAIKA 83
>sp|Q08E13|RNF10_BOVIN RING finger protein 10 OS=Bos taurus GN=RNF10 PE=2 SV=1
Length = 810
Score = 40.0 bits (92), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 28/150 (18%)
Query: 8 TCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVG 67
+CP+C K +CG+ C C H + ++EK T +CP C S K+ +
Sbjct: 224 SCPICL----YPPTAAKITRCGHIFCWACILHYLSLSEK--TWSKCPICYSSVHKKDLKS 277
Query: 68 MAAKCER--LVAEISMERKMKSQKSKTKSSEGKKQQLSSVRVIQRNLVYIVGLPLNLGDE 125
+ A R +V + + MK +K + + ++ V P++LGDE
Sbjct: 278 VVATESRQYVVGDTITMQLMKREK-------------GVLVALPKSKWMNVDHPIHLGDE 324
Query: 126 DLLQRREYFGQYGKVLKVSMSRTAAGVIQQ 155
QY K+L S + V+Q+
Sbjct: 325 Q-------HSQYSKLLLASKEQVLRRVVQE 347
>sp|Q5U259|ELV1B_XENLA ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-b PE=1 SV=1
Length = 326
Score = 40.0 bits (92), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 14/83 (16%)
Query: 121 NLG---DEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVY--ITYSKEEEAVR 175
NLG DE +L + FG +G V V VI+ F N C + +T + EEA
Sbjct: 250 NLGQDADEGILW--QMFGPFGAVTNVK-------VIRDFNTNKCKGFGFVTMTNYEEAAM 300
Query: 176 CIQSVHGFVLEGKSLKACFGTTK 198
I S++G+ L K+L+ F T+K
Sbjct: 301 AIASLNGYRLGDKTLQVSFKTSK 323
>sp|Q9CZ96|ZCRB1_MOUSE Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Mus musculus GN=Zcrb1 PE=1 SV=1
Length = 217
Score = 40.0 bits (92), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 18/88 (20%)
Query: 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSM-----SRTAAGVIQQFPNNTCSVY 164
++ VY+ LP +L + DL + F +YGKV+KV++ +R + GV +
Sbjct: 9 KSTVYVSNLPFSLTNNDLYR---IFSKYGKVVKVTIMKDKDTRKSKGV----------AF 55
Query: 165 ITYSKEEEAVRCIQSVHGFVLEGKSLKA 192
I + ++ A+ C ++++ L G+ +KA
Sbjct: 56 ILFLDKDSALNCTRAINNKQLFGRVIKA 83
>sp|Q499V6|ZCRB1_RAT Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Rattus norvegicus GN=Zcrb1 PE=2 SV=1
Length = 217
Score = 40.0 bits (92), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 18/88 (20%)
Query: 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSM-----SRTAAGVIQQFPNNTCSVY 164
++ VY+ LP +L + DL + F +YGKV+KV++ +R + GV +
Sbjct: 9 KSTVYVSNLPFSLTNNDLYR---IFSKYGKVVKVTIMKDKDTRKSKGV----------AF 55
Query: 165 ITYSKEEEAVRCIQSVHGFVLEGKSLKA 192
I + ++ A+ C ++++ L G+ +KA
Sbjct: 56 ILFLDKDSALNCTRAINNKQLFGRVIKA 83
>sp|Q9JJ43|RFOX1_MOUSE RNA binding protein fox-1 homolog 1 OS=Mus musculus GN=Rbfox1 PE=1
SV=3
Length = 396
Score = 40.0 bits (92), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYS 168
Q +++ +P D DL R+ FGQ+GK+L V + G + ++T+
Sbjct: 114 QPKRLHVSNIPFRFRDPDL---RQMFGQFGKILDVEIIFNERG-------SKGFGFVTFE 163
Query: 169 KEEEAVRCIQSVHGFVLEGKSLK 191
+A R + +HG V+EG+ ++
Sbjct: 164 NSADADRAREKLHGTVVEGRKIE 186
>sp|Q9NWB1|RFOX1_HUMAN RNA binding protein fox-1 homolog 1 OS=Homo sapiens GN=RBFOX1 PE=1
SV=2
Length = 397
Score = 39.7 bits (91), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYS 168
Q +++ +P D DL R+ FGQ+GK+L V + G + ++T+
Sbjct: 115 QPKRLHVSNIPFRFRDPDL---RQMFGQFGKILDVEIIFNERG-------SKGFGFVTFE 164
Query: 169 KEEEAVRCIQSVHGFVLEGKSLK 191
+A R + +HG V+EG+ ++
Sbjct: 165 NSADADRAREKLHGTVVEGRKIE 187
>sp|Q8TEC5|SH3R2_HUMAN Putative E3 ubiquitin-protein ligase SH3RF2 OS=Homo sapiens
GN=SH3RF2 PE=1 SV=3
Length = 729
Score = 39.7 bits (91), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSP 59
CP+C E++D+T + L PC+ + C C + K E RCP CR+P
Sbjct: 12 CPVCFEKLDVTAKVL-PCQ--HTFCKPCLQRVF----KAHKELRCPECRTP 55
>sp|Q6BIP2|RAD5_DEBHA DNA repair protein RAD5 OS=Debaryomyces hansenii (strain ATCC 36239
/ CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RAD5
PE=3 SV=2
Length = 1190
Score = 39.7 bits (91), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 3 DEGEKTCPLCAEE-MDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61
D E C +C + + L + L PC G+ C+ C D EK + CP CR P
Sbjct: 910 DLKESECSICTQSPIPLGEMALTPC--GHAYCLNCVLEHFDFQEKNSQKPLCPNCREPIS 967
Query: 62 KEKIVGM 68
K KI +
Sbjct: 968 KYKIFKL 974
>sp|A2YU42|CSLD2_ORYSI Cellulose synthase-like protein D2 OS=Oryza sativa subsp. indica
GN=CSLD2 PE=3 SV=1
Length = 1170
Score = 39.3 bits (90), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 17/86 (19%)
Query: 23 LKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPY---DKEKIVGMAAKCERLVAEI 79
+ PC+C ++IC C A+ + G CP C+ PY + + +VG
Sbjct: 164 ILPCECDFKICADC------FADAVKNGGACPGCKDPYKATELDDVVGARPTLSLPPPPG 217
Query: 80 S-----MERK---MKSQKSKTKSSEG 97
MER+ M+SQK+ T+S G
Sbjct: 218 GLPASRMERRLSIMRSQKAMTRSQTG 243
>sp|Q9LHZ7|CSLD2_ORYSJ Cellulose synthase-like protein D2 OS=Oryza sativa subsp. japonica
GN=CSLD2 PE=2 SV=1
Length = 1170
Score = 39.3 bits (90), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 17/86 (19%)
Query: 23 LKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPY---DKEKIVGMAAKCERLVAEI 79
+ PC+C ++IC C A+ + G CP C+ PY + + +VG
Sbjct: 164 ILPCECDFKICADC------FADAVKNGGACPGCKDPYKATELDDVVGARPTLSLPPPPG 217
Query: 80 S-----MERK---MKSQKSKTKSSEG 97
MER+ M+SQK+ T+S G
Sbjct: 218 GLPASRMERRLSIMRSQKAMTRSQTG 243
>sp|Q9NWH9|SLTM_HUMAN SAFB-like transcription modulator OS=Homo sapiens GN=SLTM PE=1 SV=2
Length = 1034
Score = 38.9 bits (89), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 113 VYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEE 172
+++ GL N DL + FG+YGKVL + A + P C +T S E
Sbjct: 386 IWVSGLSSNTKAADL---KNLFGKYGKVLSAKVVTNA-----RSPGAKCYGIVTMSSSTE 437
Query: 173 AVRCIQSVHGFVLEGK 188
RCI +H L G+
Sbjct: 438 VSRCIAHLHRTELHGQ 453
>sp|D3YXK2|SAFB1_MOUSE Scaffold attachment factor B1 OS=Mus musculus GN=Safb PE=1 SV=2
Length = 937
Score = 38.5 bits (88), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 25/113 (22%)
Query: 94 SSEGKKQQLSSV-------RVIQ---------RNLVYIVGLPLNLGDEDLLQRREYFGQY 137
+SEG Q++SSV R+ + RN ++ GL DL + F +Y
Sbjct: 396 ASEGADQKMSSVEEDSDTKRLSREEKGRSSCGRNF-WVSGLSSTTRATDL---KNLFSRY 451
Query: 138 GKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 190
GKV+ + A + P C ++T S EEA +CI +H L GK +
Sbjct: 452 GKVVGAKVVTNA-----RSPGARCYGFVTMSTAEEATKCISHLHKTELHGKMI 499
>sp|Q8TBF4|ZCRB1_HUMAN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Homo sapiens GN=ZCRB1 PE=1 SV=2
Length = 217
Score = 38.5 bits (88), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 18/88 (20%)
Query: 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSM-----SRTAAGVIQQFPNNTCSVY 164
++ VY+ LP +L + DL + F +YGKV+KV++ +R + GV +
Sbjct: 9 KSTVYVSNLPFSLTNNDLYR---IFSKYGKVVKVTIMKDKDTRKSKGV----------AF 55
Query: 165 ITYSKEEEAVRCIQSVHGFVLEGKSLKA 192
I + ++ A C ++++ L G+ +KA
Sbjct: 56 ILFLDKDSAQNCTRAINNKQLFGRVIKA 83
>sp|Q15424|SAFB1_HUMAN Scaffold attachment factor B1 OS=Homo sapiens GN=SAFB PE=1 SV=4
Length = 915
Score = 38.5 bits (88), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSK 169
RN ++ GL DL + F +YGKV+ + A + P C ++T S
Sbjct: 406 RNF-WVSGLSSTTRATDL---KNLFSKYGKVVGAKVVTNA-----RSPGARCYGFVTMST 456
Query: 170 EEEAVRCIQSVHGFVLEGKSL 190
EEA +CI +H L GK +
Sbjct: 457 AEEATKCINHLHKTELHGKMI 477
>sp|Q5R452|SAFB1_PONAB Scaffold attachment factor B1 OS=Pongo abelii GN=SAFB PE=2 SV=1
Length = 914
Score = 38.5 bits (88), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSK 169
RN ++ GL DL + F +YGKV+ + A + P C ++T S
Sbjct: 406 RNF-WVSGLSSTTRATDL---KNLFSKYGKVVGAKVVTNA-----RSPGARCYGFVTMST 456
Query: 170 EEEAVRCIQSVHGFVLEGKSL 190
EEA +CI +H L GK +
Sbjct: 457 AEEATKCINHLHKTELHGKMI 477
>sp|O88453|SAFB1_RAT Scaffold attachment factor B1 OS=Rattus norvegicus GN=Safb PE=1
SV=2
Length = 931
Score = 38.5 bits (88), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 25/113 (22%)
Query: 94 SSEGKKQQLSSV-------RVIQ---------RNLVYIVGLPLNLGDEDLLQRREYFGQY 137
+SEG Q++SSV R+ + RN ++ GL DL + F +Y
Sbjct: 396 ASEGADQKMSSVEDDSDTKRLSREEKGRSSCGRNF-WVSGLSSTTRATDL---KNLFSRY 451
Query: 138 GKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 190
GKV+ + A + P C ++T S EEA +CI +H L GK +
Sbjct: 452 GKVVGAKVVTNA-----RSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMI 499
>sp|P70372|ELAV1_MOUSE ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=2
Length = 326
Score = 38.1 bits (87), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 14/83 (16%)
Query: 121 NLG---DEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVY--ITYSKEEEAVR 175
NLG DE +L + FG +G V V VI+ F N C + +T + EEA
Sbjct: 250 NLGQDADEGILW--QMFGPFGAVTNVK-------VIRDFNTNKCKGFGFVTMTNYEEAAM 300
Query: 176 CIQSVHGFVLEGKSLKACFGTTK 198
I S++G+ L K L+ F T K
Sbjct: 301 AIASLNGYRLGDKILQVSFKTNK 323
>sp|Q15717|ELAV1_HUMAN ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2
Length = 326
Score = 38.1 bits (87), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 14/83 (16%)
Query: 121 NLG---DEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVY--ITYSKEEEAVR 175
NLG DE +L + FG +G V V VI+ F N C + +T + EEA
Sbjct: 250 NLGQDADEGILW--QMFGPFGAVTNVK-------VIRDFNTNKCKGFGFVTMTNYEEAAM 300
Query: 176 CIQSVHGFVLEGKSLKACFGTTK 198
I S++G+ L K L+ F T K
Sbjct: 301 AIASLNGYRLGDKILQVSFKTNK 323
>sp|Q8CH25|SLTM_MOUSE SAFB-like transcription modulator OS=Mus musculus GN=Sltm PE=1 SV=1
Length = 1031
Score = 38.1 bits (87), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 113 VYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEE 172
+++ GL N DL + FG+YGKVL + A + P C +T S E
Sbjct: 386 IWVSGLSSNTKAADL---KNLFGKYGKVLSAKVVTNA-----RSPGAKCYGIVTMSSSTE 437
Query: 173 AVRCIQSVHGFVLEGK 188
RC+ +H L G+
Sbjct: 438 VSRCVAHLHRTELHGQ 453
>sp|Q66JB7|RFOX2_XENTR RNA binding protein fox-1 homolog 2 OS=Xenopus tropicalis GN=rbfox2
PE=2 SV=1
Length = 380
Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 54/108 (50%), Gaps = 16/108 (14%)
Query: 84 KMKSQKSKTKSSEGKKQQLSSVRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKV 143
+ + Q+S+T++SE + + + R+ ++ +P D DL R+ FGQ+GK+L V
Sbjct: 89 QTEGQQSQTQNSENSESKPTPKRL------HVSNIPFRFRDPDL---RQMFGQFGKILDV 139
Query: 144 SMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLK 191
+ G + ++T+ +A R + +H V+EG+ ++
Sbjct: 140 EIIFNERG-------SKGFGFVTFETSADADRAREKLHSTVVEGRKIE 180
>sp|Q4IJ84|RAD5_GIBZE DNA repair protein RAD5 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=RAD5 PE=3 SV=1
Length = 1154
Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 28/118 (23%)
Query: 1 MSDEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWC-WHHIMDMAEKEETEGRCPACRSP 59
+ DE E CPLC EE + DQ + C + C C +I +K E RC +CR P
Sbjct: 892 IRDEAENECPLCFEE-PMNDQTV--TGCWHSACKKCLLDYIKHQTDKAEVP-RCFSCREP 947
Query: 60 YDKEKI-----------------------VGMAAKCERLVAEISMERKMKSQKSKTKS 94
+K + VG+ A ++VA +S R ++ + K KS
Sbjct: 948 INKRDLFEVVRHDDDSDMMSKKPRISLQRVGVNASSAKVVALMSELRALRREHPKMKS 1005
>sp|Q56JZ7|ZCRB1_BOVIN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Bos taurus GN=ZCRB1 PE=2 SV=1
Length = 217
Score = 38.1 bits (87), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 18/88 (20%)
Query: 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSM-----SRTAAGVIQQFPNNTCSVY 164
++ VY+ LP +L + DL + F +YGKV+KV++ +R + GV +
Sbjct: 9 KSTVYVSNLPFSLTNNDLYR---IFSKYGKVVKVTIMKDKDTRRSKGV----------AF 55
Query: 165 ITYSKEEEAVRCIQSVHGFVLEGKSLKA 192
I + ++ A C ++++ L G+ +KA
Sbjct: 56 ILFLDKDSAQNCTRAINNKQLFGRVIKA 83
>sp|Q80YR5|SAFB2_MOUSE Scaffold attachment factor B2 OS=Mus musculus GN=Safb2 PE=1 SV=2
Length = 991
Score = 37.4 bits (85), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 27/118 (22%)
Query: 91 KTKSSEGKKQQLSSVR-------VIQ-----------RNLVYIVGLPLNLGDEDLLQRRE 132
++ +SEG Q++SSV+ VI+ RNL ++ GL + DL +
Sbjct: 414 ESSASEGADQKMSSVKEEQDIKPVIKDEKGRASCSSGRNL-WVSGLSSSTRAADL---KS 469
Query: 133 YFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 190
F ++GKV+ + A + P C ++T S +EA +CI +H L G+ +
Sbjct: 470 LFSKHGKVIGAKVVTNA-----RSPGARCYGFVTMSTSDEATKCISHLHRTELHGRMI 522
>sp|Q9M9M4|CSLD3_ARATH Cellulose synthase-like protein D3 OS=Arabidopsis thaliana GN=CSLD3
PE=1 SV=1
Length = 1145
Score = 37.4 bits (85), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 21 QQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGMA 69
Q L PC+C ++IC C MD +T G CP C+ PY + A
Sbjct: 146 QDLLPCECDFKICRDC---FMDAV---KTGGMCPGCKEPYRNTDLADFA 188
>sp|A4F5G6|RFOX2_XENLA RNA binding protein fox-1 homolog 2 OS=Xenopus laevis GN=rbfox2
PE=1 SV=1
Length = 411
Score = 37.4 bits (85), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 54/108 (50%), Gaps = 16/108 (14%)
Query: 84 KMKSQKSKTKSSEGKKQQLSSVRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKV 143
+ + Q+S+++++E + + S R+ ++ +P D DL R+ FGQ+GK+L V
Sbjct: 152 QTEGQQSQSQNNENSETKASPKRL------HVSNIPFRFRDPDL---RQMFGQFGKILDV 202
Query: 144 SMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLK 191
+ G + ++T+ +A R + +H V+EG+ ++
Sbjct: 203 EIIFNERG-------SKGFGFVTFETSADADRAREKLHSTVVEGRKIE 243
>sp|A6NFN3|RFOX3_HUMAN RNA binding protein fox-1 homolog 3 OS=Homo sapiens GN=RBFOX3 PE=2
SV=4
Length = 312
Score = 36.6 bits (83), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 47/108 (43%), Gaps = 20/108 (18%)
Query: 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYS 168
Q +++ +P D DL R+ FGQ+GK+L V + G + ++T+
Sbjct: 97 QPKRLHVSNIPFRFRDPDL---RQMFGQFGKILDVEIIFNERG-------SKGFGFVTFE 146
Query: 169 KEEEAVRCIQSVHGFVLEGKSLKACFGTTK----------YCHAWLRN 206
+A R + ++G ++EG+ ++ T + Y + W N
Sbjct: 147 TSSDADRAREKLNGTIVEGRKIEVNNATARVMTNKKTGNPYTNGWKLN 194
>sp|Q14151|SAFB2_HUMAN Scaffold attachment factor B2 OS=Homo sapiens GN=SAFB2 PE=1 SV=1
Length = 953
Score = 36.2 bits (82), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSK 169
RNL ++ GL DL + F +YGKV+ + A + P C ++T S
Sbjct: 407 RNL-WVSGLSSTTRATDL---KNLFSKYGKVVGAKVVTNA-----RSPGARCYGFVTMST 457
Query: 170 EEEAVRCIQSVHGFVLEGKSL 190
+EA +CI +H L G+ +
Sbjct: 458 SDEATKCISHLHRTELHGRMI 478
>sp|Q9FNI6|SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A member 3-like 2
OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1
Length = 1029
Score = 36.2 bits (82), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 69/164 (42%), Gaps = 24/164 (14%)
Query: 3 DEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62
++GE CP+C E ++ D L PC + +C C + + + T G CP CR+ K
Sbjct: 790 EQGE--CPICLEALE--DAVLTPC--AHRLCREC----LLASWRNSTSGLCPVCRNTVSK 839
Query: 63 EKIVGM-------------AAKCERLVAEISMERKMKSQKSKTKSSEGKKQQLSSVRV-I 108
++++ + ++ A + ++S SK+ L +++ +
Sbjct: 840 QELITAPTESRFQVDVEKNWVESSKITALLEELEGLRSSGSKSILFSQWTAFLDLLQIPL 899
Query: 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGV 152
RN V L L + + + F + G +L + MS A GV
Sbjct: 900 SRNNFSFVRLDGTLSQQQREKVLKEFSEDGSILVLLMSLKAGGV 943
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 113 VYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEE 172
VYI + DE L +E F Q+GK L V + R G + F +++Y K E+
Sbjct: 193 VYIKNFGEEVDDESL---KELFSQFGKTLSVKVMRDPNGKSKGFG------FVSYEKHED 243
Query: 173 AVRCIQSVHGFVLEGKSL 190
A + ++ ++G + GK +
Sbjct: 244 ANKAVEEMNGKEISGKII 261
>sp|Q8BIF2|RFOX3_MOUSE RNA binding protein fox-1 homolog 3 OS=Mus musculus GN=Rbfox3 PE=1
SV=2
Length = 374
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYS 168
Q +++ +P D DL R+ FGQ+GK+L V + G + ++T+
Sbjct: 97 QPKRLHVSNIPFRFRDPDL---RQMFGQFGKILDVEIIFNERG-------SKGFGFVTFE 146
Query: 169 KEEEAVRCIQSVHGFVLEGKSLK 191
+A R + ++G ++EG+ ++
Sbjct: 147 TSSDADRAREKLNGTIVEGRKIE 169
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 113 VYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEE 172
VYI ++ DE L +E+FGQYG L V + G + F ++++ + E+
Sbjct: 193 VYIKNFGEDMDDERL---KEWFGQYGAALSVKVMTDDHGKSRGFG------FVSFERHED 243
Query: 173 AVRCIQSVHGFVLEGKSL 190
A + + ++G L GK++
Sbjct: 244 AQKAVDDMNGKDLNGKAI 261
>sp|Q5C8U4|TRIM5_CERPY Tripartite motif-containing protein 5 OS=Cercopithecus
pygerythrus GN=TRIM5 PE=2 SV=1
Length = 515
Score = 35.4 bits (80), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 6 EKTCPLCAEEMDLTDQQLKPCKCGYEICVWCW--HHIMDMAEKEETEGRCPACRSPYDKE 63
E TCP+C E LT+ PC G+ +C C +H M KEE E CP CR Y E
Sbjct: 12 EVTCPICLEL--LTEPLSLPC--GHSLCQACITANHKESMLYKEE-ERSCPVCRISYQPE 66
Query: 64 KI 65
I
Sbjct: 67 NI 68
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.126 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 308,644,059
Number of Sequences: 539616
Number of extensions: 13162733
Number of successful extensions: 30342
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 359
Number of HSP's that attempted gapping in prelim test: 29839
Number of HSP's gapped (non-prelim): 759
length of query: 816
length of database: 191,569,459
effective HSP length: 126
effective length of query: 690
effective length of database: 123,577,843
effective search space: 85268711670
effective search space used: 85268711670
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 66 (30.0 bits)