Query 003485
Match_columns 816
No_of_seqs 253 out of 913
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 00:19:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003485.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003485hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5175 MOT2 Transcriptional r 100.0 7.6E-79 1.7E-83 637.5 19.0 229 2-238 10-243 (480)
2 KOG2068 MOT2 transcription fac 100.0 2.5E-59 5.4E-64 491.5 12.5 304 29-349 1-309 (327)
3 PF14570 zf-RING_4: RING/Ubox 99.8 4.6E-22 1E-26 160.4 2.8 48 9-61 1-48 (48)
4 PLN03134 glycine-rich RNA-bind 99.5 4.2E-14 9E-19 135.1 11.0 89 101-198 26-114 (144)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 3.2E-14 6.9E-19 148.0 10.8 79 112-198 271-349 (352)
6 PF00076 RRM_1: RNA recognitio 99.5 4.6E-14 1E-18 113.3 8.5 70 113-191 1-70 (70)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 1.8E-13 4E-18 142.4 10.7 109 110-237 3-111 (352)
8 PF14259 RRM_6: RNA recognitio 99.4 3.3E-12 7.2E-17 104.7 9.0 70 113-191 1-70 (70)
9 KOG0125 Ataxin 2-binding prote 99.3 1.3E-12 2.9E-17 139.3 7.7 80 109-198 95-174 (376)
10 TIGR01659 sex-lethal sex-letha 99.3 6.2E-12 1.3E-16 135.6 10.0 83 107-197 104-186 (346)
11 smart00362 RRM_2 RNA recogniti 99.3 1.5E-11 3.2E-16 96.2 8.7 72 112-193 1-72 (72)
12 KOG0114 Predicted RNA-binding 99.3 9.6E-12 2.1E-16 115.8 8.7 83 103-196 9-93 (124)
13 PLN03120 nucleic acid binding 99.3 1.2E-11 2.5E-16 129.5 10.0 76 109-196 3-78 (260)
14 KOG0111 Cyclophilin-type pepti 99.3 3E-12 6.6E-17 131.2 4.6 84 107-198 7-90 (298)
15 COG0724 RNA-binding proteins ( 99.3 2.1E-11 4.6E-16 114.8 9.4 80 110-197 115-194 (306)
16 TIGR01659 sex-lethal sex-letha 99.2 2.8E-11 6.1E-16 130.5 10.7 83 108-198 191-275 (346)
17 TIGR01645 half-pint poly-U bin 99.2 2.3E-11 4.9E-16 139.6 10.5 81 110-198 204-284 (612)
18 cd00590 RRM RRM (RNA recogniti 99.2 5.3E-11 1.1E-15 93.5 9.4 74 112-194 1-74 (74)
19 TIGR01628 PABP-1234 polyadenyl 99.2 2.3E-11 5.1E-16 135.9 10.3 83 107-198 282-364 (562)
20 KOG0122 Translation initiation 99.2 3.1E-11 6.6E-16 125.2 9.2 82 109-198 188-269 (270)
21 KOG0107 Alternative splicing f 99.2 2.1E-11 4.6E-16 121.6 7.4 78 110-200 10-87 (195)
22 TIGR01622 SF-CC1 splicing fact 99.2 4.4E-11 9.4E-16 129.6 10.2 79 110-196 186-264 (457)
23 smart00360 RRM RNA recognition 99.2 5E-11 1.1E-15 92.6 7.7 71 115-193 1-71 (71)
24 TIGR01645 half-pint poly-U bin 99.2 4.6E-11 9.9E-16 137.1 10.6 79 110-196 107-185 (612)
25 KOG4206 Spliceosomal protein s 99.2 2.9E-11 6.2E-16 123.8 7.8 87 107-201 5-93 (221)
26 TIGR01642 U2AF_lg U2 snRNP aux 99.2 7.6E-11 1.6E-15 129.2 11.3 81 109-197 294-374 (509)
27 PLN03213 repressor of silencin 99.2 4E-11 8.7E-16 133.0 8.4 79 111-201 11-91 (759)
28 KOG0148 Apoptosis-promoting RN 99.2 5.9E-11 1.3E-15 124.6 8.6 76 109-198 163-238 (321)
29 TIGR01628 PABP-1234 polyadenyl 99.2 7.7E-11 1.7E-15 131.9 10.0 109 112-237 2-110 (562)
30 PF13893 RRM_5: RNA recognitio 99.2 1E-10 2.2E-15 93.5 7.7 55 131-195 2-56 (56)
31 KOG0149 Predicted RNA-binding 99.2 3.6E-11 7.8E-16 124.0 6.1 78 109-195 11-88 (247)
32 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 2E-10 4.4E-15 127.5 10.3 77 109-198 274-351 (481)
33 KOG0145 RNA-binding protein EL 99.1 2.2E-10 4.7E-15 120.0 9.8 81 110-198 278-358 (360)
34 KOG0148 Apoptosis-promoting RN 99.1 1E-10 2.2E-15 122.8 7.0 81 111-199 63-143 (321)
35 KOG0126 Predicted RNA-binding 99.1 2.4E-11 5.2E-16 122.0 1.5 77 110-194 35-111 (219)
36 KOG4207 Predicted splicing fac 99.1 1E-10 2.2E-15 119.4 5.6 82 107-196 10-91 (256)
37 TIGR01622 SF-CC1 splicing fact 99.1 3.7E-10 8E-15 122.5 10.2 116 110-237 89-208 (457)
38 smart00361 RRM_1 RNA recogniti 99.1 5.1E-10 1.1E-14 94.1 7.7 64 124-193 2-70 (70)
39 TIGR01648 hnRNP-R-Q heterogene 99.0 4.3E-10 9.2E-15 128.7 9.2 90 109-208 57-147 (578)
40 KOG0121 Nuclear cap-binding pr 99.0 3.1E-10 6.6E-15 109.1 6.6 78 109-194 35-112 (153)
41 PLN03121 nucleic acid binding 99.0 8.8E-10 1.9E-14 114.5 9.2 75 110-196 5-79 (243)
42 TIGR01648 hnRNP-R-Q heterogene 99.0 1.2E-09 2.6E-14 125.1 9.7 72 111-198 234-307 (578)
43 KOG0131 Splicing factor 3b, su 99.0 5.6E-10 1.2E-14 112.1 5.7 81 108-196 7-87 (203)
44 KOG0105 Alternative splicing f 99.0 9.6E-10 2.1E-14 110.9 6.5 84 111-205 7-90 (241)
45 KOG0117 Heterogeneous nuclear 98.9 2.2E-09 4.7E-14 118.5 9.0 104 107-235 80-184 (506)
46 KOG0108 mRNA cleavage and poly 98.9 1.6E-09 3.6E-14 120.4 7.9 80 111-198 19-98 (435)
47 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.9 2.8E-09 6.1E-14 118.6 9.7 79 110-198 394-480 (481)
48 KOG0113 U1 small nuclear ribon 98.8 1.9E-08 4.2E-13 107.0 8.9 88 110-205 101-188 (335)
49 KOG0130 RNA-binding protein RB 98.7 1.6E-08 3.5E-13 98.2 6.1 83 105-195 67-149 (170)
50 KOG0127 Nucleolar protein fibr 98.7 3.6E-08 7.7E-13 111.2 8.5 115 111-234 293-424 (678)
51 TIGR01642 U2AF_lg U2 snRNP aux 98.7 4.4E-08 9.5E-13 107.7 9.0 82 110-196 409-500 (509)
52 KOG0127 Nucleolar protein fibr 98.7 5.4E-08 1.2E-12 109.8 8.4 80 110-198 117-196 (678)
53 KOG0117 Heterogeneous nuclear 98.6 4E-08 8.7E-13 108.8 7.0 70 112-197 261-330 (506)
54 KOG0144 RNA-binding protein CU 98.6 2.2E-08 4.7E-13 110.5 4.8 84 106-198 120-206 (510)
55 KOG0147 Transcriptional coacti 98.6 4.6E-08 1E-12 110.2 6.1 78 113-198 281-358 (549)
56 KOG0145 RNA-binding protein EL 98.6 9.1E-08 2E-12 100.7 7.9 88 109-206 40-127 (360)
57 KOG0132 RNA polymerase II C-te 98.6 8.2E-08 1.8E-12 111.5 8.2 89 96-198 403-495 (894)
58 KOG0146 RNA-binding protein ET 98.5 7.4E-08 1.6E-12 101.7 5.0 81 110-198 285-365 (371)
59 KOG2068 MOT2 transcription fac 98.5 4.4E-08 9.6E-13 105.4 3.3 54 7-66 250-303 (327)
60 KOG0124 Polypyrimidine tract-b 98.5 1.2E-07 2.7E-12 103.1 4.9 75 111-193 114-188 (544)
61 KOG4208 Nucleolar RNA-binding 98.4 4.9E-07 1.1E-11 92.5 7.6 80 110-197 49-129 (214)
62 KOG0533 RRM motif-containing p 98.4 8E-07 1.7E-11 93.0 7.9 78 111-197 84-161 (243)
63 KOG0144 RNA-binding protein CU 98.3 7.4E-07 1.6E-11 98.8 7.0 78 113-198 37-117 (510)
64 KOG0131 Splicing factor 3b, su 98.3 5.9E-07 1.3E-11 90.8 5.6 88 101-198 89-177 (203)
65 KOG0123 Polyadenylate-binding 98.3 1.2E-06 2.6E-11 96.1 8.5 75 113-198 79-153 (369)
66 KOG4661 Hsp27-ERE-TATA-binding 98.3 8.2E-07 1.8E-11 100.7 7.0 77 111-195 406-482 (940)
67 KOG0151 Predicted splicing reg 98.3 1.3E-06 2.8E-11 101.2 7.3 112 107-223 171-289 (877)
68 KOG0109 RNA-binding protein LA 98.3 7.4E-07 1.6E-11 95.1 5.1 71 112-198 4-74 (346)
69 KOG0153 Predicted RNA-binding 98.2 1.9E-06 4E-11 93.6 7.0 74 111-198 229-303 (377)
70 KOG0415 Predicted peptidyl pro 98.2 3.2E-06 7E-11 92.2 8.5 89 101-197 229-318 (479)
71 KOG0109 RNA-binding protein LA 98.2 1.2E-06 2.6E-11 93.5 5.1 77 110-202 78-154 (346)
72 KOG0123 Polyadenylate-binding 98.2 1.4E-06 3E-11 95.6 5.3 84 106-198 266-349 (369)
73 KOG0110 RNA-binding protein (R 98.2 4E-06 8.7E-11 97.2 8.8 124 107-238 512-636 (725)
74 KOG1548 Transcription elongati 98.1 1.4E-05 3E-10 87.1 9.5 87 103-198 127-221 (382)
75 KOG0124 Polypyrimidine tract-b 98.0 1.2E-05 2.6E-10 88.1 6.7 79 110-196 210-288 (544)
76 KOG4660 Protein Mei2, essentia 97.9 7.4E-06 1.6E-10 93.1 3.6 88 97-198 63-150 (549)
77 KOG4205 RNA-binding protein mu 97.9 1.1E-05 2.4E-10 87.2 4.0 75 110-193 6-80 (311)
78 KOG1548 Transcription elongati 97.8 4.3E-05 9.3E-10 83.4 7.2 61 132-201 295-357 (382)
79 KOG4205 RNA-binding protein mu 97.8 2.7E-05 5.8E-10 84.3 5.2 84 111-203 98-181 (311)
80 KOG1995 Conserved Zn-finger pr 97.7 2.7E-05 5.8E-10 85.0 4.9 98 106-211 62-167 (351)
81 KOG0106 Alternative splicing f 97.7 2.1E-05 4.5E-10 81.4 3.6 71 112-198 3-73 (216)
82 KOG0110 RNA-binding protein (R 97.7 2.8E-05 6E-10 90.5 4.1 80 110-197 613-692 (725)
83 KOG2202 U2 snRNP splicing fact 97.7 1.6E-05 3.6E-10 83.7 2.0 79 135-220 91-175 (260)
84 KOG4454 RNA binding protein (R 97.6 1.9E-05 4.2E-10 82.0 1.5 73 112-194 11-83 (267)
85 KOG0147 Transcriptional coacti 97.6 0.00011 2.4E-09 83.8 6.7 75 132-220 472-547 (549)
86 PF11608 Limkain-b1: Limkain b 97.5 0.00029 6.3E-09 64.3 7.6 71 111-196 3-75 (90)
87 KOG0116 RasGAP SH3 binding pro 97.5 0.00015 3.3E-09 81.2 6.8 80 113-201 291-370 (419)
88 KOG4209 Splicing factor RNPS1, 97.5 0.00017 3.8E-09 75.1 6.6 83 107-198 98-180 (231)
89 KOG0146 RNA-binding protein ET 97.5 0.0002 4.4E-09 76.4 6.3 78 112-198 21-101 (371)
90 KOG4212 RNA-binding protein hn 97.4 0.00026 5.6E-09 79.4 6.6 72 110-194 536-607 (608)
91 KOG4212 RNA-binding protein hn 97.4 0.00052 1.1E-08 77.0 8.3 78 107-193 40-119 (608)
92 KOG1190 Polypyrimidine tract-b 97.4 0.00049 1.1E-08 76.7 8.0 102 110-238 297-398 (492)
93 KOG1457 RNA binding protein (c 97.3 0.0008 1.7E-08 70.6 8.4 81 111-198 35-118 (284)
94 PF13920 zf-C3HC4_3: Zinc fing 97.1 0.00019 4E-09 57.5 1.2 47 5-61 1-48 (50)
95 KOG0120 Splicing factor U2AF, 97.0 0.0014 3.1E-08 75.0 7.8 62 131-194 427-488 (500)
96 PLN02189 cellulose synthase 97.0 0.00038 8.2E-09 84.7 2.4 50 7-61 35-87 (1040)
97 KOG1996 mRNA splicing factor [ 96.9 0.00089 1.9E-08 72.3 4.8 60 131-194 304-363 (378)
98 PF05172 Nup35_RRM: Nup53/35/4 96.9 0.00083 1.8E-08 62.3 3.7 76 110-190 6-83 (100)
99 PF14605 Nup35_RRM_2: Nup53/35 96.9 0.0018 4E-08 53.3 5.0 52 111-177 2-53 (53)
100 PF13639 zf-RING_2: Ring finge 96.8 0.00033 7.2E-09 54.6 0.3 44 7-57 1-44 (44)
101 TIGR00570 cdk7 CDK-activating 96.8 0.0022 4.7E-08 69.8 6.3 55 6-66 3-59 (309)
102 PF08777 RRM_3: RNA binding mo 96.7 0.0037 7.9E-08 58.1 6.0 58 112-183 3-60 (105)
103 KOG2314 Translation initiation 96.6 0.0032 6.8E-08 72.7 6.2 78 110-193 58-139 (698)
104 cd00162 RING RING-finger (Real 96.6 0.0024 5.2E-08 47.3 3.3 44 8-59 1-44 (45)
105 KOG4211 Splicing factor hnRNP- 96.5 0.015 3.2E-07 66.5 10.6 82 112-205 12-93 (510)
106 PLN02436 cellulose synthase A 96.5 0.0012 2.7E-08 80.6 2.4 50 7-61 37-89 (1094)
107 PF04059 RRM_2: RNA recognitio 96.5 0.021 4.5E-07 53.0 9.8 82 110-198 1-87 (97)
108 KOG0120 Splicing factor U2AF, 96.4 0.0022 4.8E-08 73.4 3.7 84 106-197 285-368 (500)
109 PLN03208 E3 ubiquitin-protein 96.4 0.0034 7.3E-08 64.5 4.1 59 4-66 16-84 (193)
110 KOG4210 Nuclear localization s 96.2 0.0026 5.7E-08 68.2 2.6 85 111-204 185-273 (285)
111 PHA02929 N1R/p28-like protein; 96.1 0.0054 1.2E-07 64.7 4.0 51 5-61 173-227 (238)
112 KOG0226 RNA-binding proteins [ 95.9 0.0062 1.3E-07 65.0 3.7 74 112-193 192-265 (290)
113 KOG3152 TBP-binding protein, a 95.9 0.003 6.5E-08 67.2 1.3 77 110-189 74-157 (278)
114 KOG0106 Alternative splicing f 95.7 0.0061 1.3E-07 63.5 2.4 75 102-192 89-165 (216)
115 KOG1456 Heterogeneous nuclear 95.7 0.04 8.7E-07 61.6 8.6 76 109-196 286-361 (494)
116 KOG1365 RNA-binding protein Fu 95.5 0.013 2.8E-07 65.5 4.3 81 101-192 273-356 (508)
117 PLN02248 cellulose synthase-li 95.4 0.014 2.9E-07 72.1 4.3 50 7-62 125-178 (1135)
118 smart00504 Ubox Modified RING 95.4 0.017 3.7E-07 47.2 3.5 50 6-65 1-50 (63)
119 KOG1190 Polypyrimidine tract-b 95.2 0.027 5.9E-07 63.4 5.5 71 114-196 154-226 (492)
120 PLN02195 cellulose synthase A 95.0 0.015 3.3E-07 70.9 3.2 57 1-62 1-60 (977)
121 PF08952 DUF1866: Domain of un 94.9 0.056 1.2E-06 53.7 6.2 56 126-198 52-107 (146)
122 TIGR00599 rad18 DNA repair pro 94.8 0.042 9.2E-07 61.8 5.8 52 4-65 24-75 (397)
123 KOG2177 Predicted E3 ubiquitin 94.8 0.016 3.4E-07 56.4 1.9 48 4-61 11-58 (386)
124 PF13923 zf-C3HC4_2: Zinc fing 94.6 0.019 4E-07 44.0 1.6 39 9-56 1-39 (39)
125 KOG4206 Spliceosomal protein s 94.5 0.091 2E-06 55.2 7.0 77 107-196 143-220 (221)
126 PF14634 zf-RING_5: zinc-RING 94.4 0.043 9.4E-07 43.2 3.3 44 8-58 1-44 (44)
127 KOG4307 RNA binding protein RB 94.3 0.093 2E-06 62.3 7.0 74 112-194 869-943 (944)
128 smart00184 RING Ring finger. E 94.3 0.052 1.1E-06 38.7 3.3 39 9-56 1-39 (39)
129 PF05290 Baculo_IE-1: Baculovi 94.2 0.042 9.1E-07 54.0 3.4 57 3-64 77-135 (140)
130 PF14569 zf-UDP: Zinc-binding 93.8 0.054 1.2E-06 49.0 3.1 53 5-62 8-63 (80)
131 KOG0320 Predicted E3 ubiquitin 93.8 0.053 1.1E-06 55.5 3.3 52 6-65 131-182 (187)
132 KOG1456 Heterogeneous nuclear 93.7 0.25 5.3E-06 55.6 8.5 72 115-199 127-200 (494)
133 PF00097 zf-C3HC4: Zinc finger 93.3 0.05 1.1E-06 41.5 1.7 41 9-56 1-41 (41)
134 KOG4285 Mitotic phosphoprotein 93.2 0.14 3.1E-06 56.0 5.6 65 111-191 198-262 (350)
135 KOG2416 Acinus (induces apopto 93.2 0.063 1.4E-06 62.8 3.0 74 110-197 444-521 (718)
136 KOG0112 Large RNA-binding prot 93.1 0.1 2.2E-06 63.3 4.8 82 102-197 447-530 (975)
137 KOG0129 Predicted RNA-binding 93.1 0.16 3.4E-06 58.7 6.0 69 103-179 363-432 (520)
138 PLN02915 cellulose synthase A 92.9 0.062 1.3E-06 66.3 2.7 51 6-61 15-68 (1044)
139 KOG4211 Splicing factor hnRNP- 92.9 0.23 5.1E-06 57.1 7.0 73 111-193 104-177 (510)
140 KOG1457 RNA binding protein (c 92.9 0.093 2E-06 55.7 3.5 64 110-185 210-273 (284)
141 PLN02638 cellulose synthase A 92.7 0.058 1.3E-06 66.7 2.1 50 7-61 18-70 (1079)
142 PHA02926 zinc finger-like prot 92.4 0.14 3.1E-06 54.1 4.2 57 5-61 169-230 (242)
143 KOG0129 Predicted RNA-binding 92.1 0.46 9.9E-06 55.1 8.1 80 111-197 260-342 (520)
144 KOG0115 RNA-binding protein p5 91.9 0.21 4.5E-06 53.7 4.8 107 105-221 26-136 (275)
145 PLN02400 cellulose synthase 91.3 0.096 2.1E-06 64.9 1.7 50 7-61 37-89 (1085)
146 PF15227 zf-C3HC4_4: zinc fing 91.1 0.15 3.2E-06 40.5 2.0 42 9-56 1-42 (42)
147 PF10309 DUF2414: Protein of u 91.0 0.65 1.4E-05 40.4 6.0 56 108-180 3-62 (62)
148 KOG3002 Zn finger protein [Gen 90.8 0.16 3.6E-06 55.3 2.8 46 4-61 46-91 (299)
149 KOG0317 Predicted E3 ubiquitin 90.8 0.2 4.4E-06 54.5 3.4 53 4-66 237-289 (293)
150 PF13445 zf-RING_UBOX: RING-ty 90.7 0.15 3.3E-06 41.0 1.8 43 9-54 1-43 (43)
151 KOG1855 Predicted RNA-binding 90.7 0.24 5.2E-06 56.4 4.0 90 100-193 219-319 (484)
152 COG5236 Uncharacterized conser 90.5 0.16 3.6E-06 56.5 2.5 53 3-63 58-110 (493)
153 PF04641 Rtf2: Rtf2 RING-finge 90.2 0.34 7.4E-06 51.3 4.4 64 4-74 111-174 (260)
154 PF04847 Calcipressin: Calcipr 89.8 0.47 1E-05 48.5 4.9 57 131-198 13-71 (184)
155 PF08675 RNA_bind: RNA binding 89.7 0.96 2.1E-05 41.8 6.2 56 110-181 8-63 (87)
156 PF12861 zf-Apc11: Anaphase-pr 89.0 0.44 9.4E-06 43.8 3.5 54 5-61 20-82 (85)
157 KOG1365 RNA-binding protein Fu 88.7 1 2.2E-05 51.1 6.8 58 113-179 164-225 (508)
158 KOG2193 IGF-II mRNA-binding pr 86.1 0.8 1.7E-05 52.4 4.2 75 111-199 2-77 (584)
159 KOG4307 RNA binding protein RB 85.3 0.54 1.2E-05 56.3 2.5 75 110-193 434-509 (944)
160 PF03467 Smg4_UPF3: Smg-4/UPF3 84.9 1.3 2.9E-05 44.7 4.7 70 110-185 7-80 (176)
161 KOG2135 Proteins containing th 84.6 0.45 9.7E-06 54.8 1.5 71 111-196 373-444 (526)
162 COG5432 RAD18 RING-finger-cont 84.4 0.45 9.9E-06 52.1 1.3 47 7-65 26-74 (391)
163 KOG3800 Predicted E3 ubiquitin 84.0 1.3 2.8E-05 48.6 4.5 54 8-66 2-56 (300)
164 PF10650 zf-C3H1: Putative zin 83.6 0.58 1.3E-05 33.8 1.2 20 199-218 2-21 (23)
165 KOG0128 RNA-binding protein SA 83.2 0.49 1.1E-05 57.5 1.0 79 108-195 734-812 (881)
166 KOG2857 Predicted MYND Zn-fing 82.9 0.54 1.2E-05 47.0 1.0 28 26-62 2-29 (157)
167 COG5574 PEX10 RING-finger-cont 82.6 0.88 1.9E-05 49.2 2.6 47 4-58 213-259 (271)
168 KOG0287 Postreplication repair 82.4 0.55 1.2E-05 52.4 1.0 50 6-65 23-72 (442)
169 PF11767 SET_assoc: Histone ly 82.3 1.9 4.1E-05 37.8 4.1 29 163-191 36-64 (66)
170 KOG4676 Splicing factor, argin 81.7 1.4 3.1E-05 50.0 3.9 75 112-192 9-83 (479)
171 PF04564 U-box: U-box domain; 81.6 0.73 1.6E-05 40.0 1.3 52 6-66 4-55 (73)
172 COG5243 HRD1 HRD ubiquitin lig 81.6 1 2.2E-05 50.8 2.7 50 5-60 286-344 (491)
173 KOG2164 Predicted E3 ubiquitin 80.1 1.3 2.8E-05 51.6 2.9 52 6-62 186-237 (513)
174 KOG4172 Predicted E3 ubiquitin 79.4 0.65 1.4E-05 40.1 0.2 47 6-61 7-54 (62)
175 KOG0311 Predicted E3 ubiquitin 79.2 0.5 1.1E-05 52.8 -0.6 51 5-63 42-92 (381)
176 KOG0802 E3 ubiquitin ligase [P 78.0 1.2 2.5E-05 51.9 1.8 52 5-63 290-343 (543)
177 PF12678 zf-rbx1: RING-H2 zinc 77.8 1.9 4E-05 37.8 2.6 47 5-57 18-73 (73)
178 KOG4265 Predicted E3 ubiquitin 77.7 1.1 2.4E-05 50.0 1.5 48 4-62 288-337 (349)
179 PF08274 PhnA_Zn_Ribbon: PhnA 74.2 1.1 2.4E-05 34.0 0.2 26 7-32 3-29 (30)
180 COG5222 Uncharacterized conser 74.0 4.1 8.9E-05 45.2 4.4 43 7-58 275-318 (427)
181 PF15023 DUF4523: Protein of u 73.8 15 0.00033 37.4 7.9 75 107-194 83-158 (166)
182 KOG2923 Uncharacterized conser 73.2 1.5 3.3E-05 38.7 0.8 33 21-58 20-52 (67)
183 KOG0128 RNA-binding protein SA 73.1 0.5 1.1E-05 57.4 -2.8 69 110-186 667-735 (881)
184 PF07191 zinc-ribbons_6: zinc- 71.4 0.57 1.2E-05 41.7 -2.2 42 6-62 1-42 (70)
185 KOG2591 c-Mpl binding protein, 70.9 6.2 0.00013 46.8 5.2 84 104-205 168-256 (684)
186 KOG0112 Large RNA-binding prot 70.6 1.1 2.3E-05 55.1 -0.9 79 110-197 372-450 (975)
187 KOG1941 Acetylcholine receptor 69.7 1.8 3.9E-05 49.2 0.7 50 5-58 364-413 (518)
188 KOG0823 Predicted E3 ubiquitin 68.1 3.6 7.8E-05 43.9 2.4 57 3-66 44-100 (230)
189 KOG0297 TNF receptor-associate 64.2 4.8 0.0001 45.4 2.6 52 4-64 19-70 (391)
190 PF14608 zf-CCCH_2: Zinc finge 63.7 4.2 9.1E-05 27.7 1.3 11 208-218 7-18 (19)
191 KOG4574 RNA-binding protein (c 62.7 4.4 9.6E-05 49.8 2.1 83 101-198 290-374 (1007)
192 PHA02825 LAP/PHD finger-like p 62.4 6.6 0.00014 40.1 2.9 50 4-63 6-61 (162)
193 smart00356 ZnF_C3H1 zinc finge 62.1 6.6 0.00014 27.3 2.1 23 197-220 4-27 (27)
194 COG5216 Uncharacterized conser 60.1 2.8 6.1E-05 36.7 -0.1 34 20-58 18-52 (67)
195 KOG4849 mRNA cleavage factor I 60.0 7.8 0.00017 43.9 3.2 74 110-189 80-153 (498)
196 KOG1812 Predicted E3 ubiquitin 59.6 6 0.00013 44.7 2.3 49 6-55 146-195 (384)
197 KOG0804 Cytoplasmic Zn-finger 57.6 22 0.00048 41.5 6.2 67 110-186 74-141 (493)
198 PF11793 FANCL_C: FANCL C-term 56.4 5.6 0.00012 34.8 1.1 53 6-61 2-66 (70)
199 COG5220 TFB3 Cdk activating ki 55.9 5.2 0.00011 43.3 1.0 50 6-60 10-63 (314)
200 KOG2193 IGF-II mRNA-binding pr 53.8 0.74 1.6E-05 52.6 -5.9 70 113-194 83-153 (584)
201 KOG4210 Nuclear localization s 52.2 8.3 0.00018 42.0 1.8 109 111-233 89-203 (285)
202 KOG2879 Predicted E3 ubiquitin 50.6 13 0.00028 41.0 2.9 50 5-61 238-287 (298)
203 PF07576 BRAP2: BRCA1-associat 48.6 1E+02 0.0022 29.6 8.2 66 111-186 13-80 (110)
204 COG0068 HypF Hydrogenase matur 47.6 3.6 7.7E-05 49.9 -1.9 26 6-31 101-132 (750)
205 PF03880 DbpA: DbpA RNA bindin 47.3 37 0.00081 29.6 4.8 59 120-195 11-74 (74)
206 PF02318 FYVE_2: FYVE-type zin 46.7 10 0.00022 36.0 1.2 49 5-58 53-102 (118)
207 PF00642 zf-CCCH: Zinc finger 46.5 7.6 0.00017 28.2 0.3 24 196-219 2-26 (27)
208 PF01485 IBR: IBR domain; Int 43.5 12 0.00026 30.4 1.1 34 5-38 17-56 (64)
209 KOG0804 Cytoplasmic Zn-finger 42.9 14 0.0003 43.1 1.8 24 5-28 174-197 (493)
210 KOG4185 Predicted E3 ubiquitin 42.8 18 0.00039 38.5 2.6 49 7-60 4-54 (296)
211 KOG0826 Predicted E3 ubiquitin 40.9 14 0.0003 41.6 1.4 41 6-58 300-343 (357)
212 PF06827 zf-FPG_IleRS: Zinc fi 40.6 3.9 8.5E-05 30.1 -1.9 28 31-58 2-29 (30)
213 COG5183 SSM4 Protein involved 39.8 20 0.00044 44.4 2.6 55 4-65 10-70 (1175)
214 KOG1493 Anaphase-promoting com 39.7 27 0.00058 32.3 2.7 54 6-60 20-80 (84)
215 PF12773 DZR: Double zinc ribb 37.9 28 0.0006 27.9 2.3 42 9-63 1-42 (50)
216 KOG0105 Alternative splicing f 37.5 80 0.0017 33.7 6.1 71 110-201 115-185 (241)
217 KOG4628 Predicted E3 ubiquitin 34.9 27 0.00058 39.6 2.5 48 8-62 231-279 (348)
218 COG5219 Uncharacterized conser 34.5 18 0.00038 45.6 1.0 49 4-60 1467-1522(1525)
219 smart00744 RINGv The RING-vari 33.7 48 0.001 27.3 3.1 46 8-57 1-49 (49)
220 KOG0824 Predicted E3 ubiquitin 33.3 37 0.00081 38.0 3.2 53 6-68 7-59 (324)
221 PRK11595 DNA utilization prote 33.0 34 0.00074 35.6 2.7 40 7-61 6-45 (227)
222 PF12773 DZR: Double zinc ribb 32.9 36 0.00078 27.2 2.3 29 3-31 9-38 (50)
223 TIGR00416 sms DNA repair prote 31.6 21 0.00046 41.1 1.1 24 21-58 5-29 (454)
224 PF10571 UPF0547: Uncharacteri 31.6 31 0.00066 25.5 1.5 21 8-31 2-23 (26)
225 KOG1729 FYVE finger containing 30.8 11 0.00024 41.5 -1.3 60 2-62 164-226 (288)
226 KOG4019 Calcineurin-mediated s 30.0 68 0.0015 33.8 4.2 95 113-218 13-110 (193)
227 KOG1492 C3H1-type Zn-finger pr 29.9 20 0.00044 38.5 0.5 26 199-225 263-288 (377)
228 PF11781 RRN7: RNA polymerase 29.8 26 0.00057 27.5 0.9 26 7-32 9-35 (36)
229 KOG3161 Predicted E3 ubiquitin 29.6 22 0.00047 43.2 0.7 48 7-65 12-59 (861)
230 PHA02862 5L protein; Provision 29.0 44 0.00095 34.1 2.6 45 7-61 3-53 (156)
231 KOG4213 RNA-binding protein La 28.7 45 0.00098 35.1 2.7 64 107-181 108-171 (205)
232 KOG1785 Tyrosine kinase negati 28.0 30 0.00066 40.0 1.4 46 7-60 370-415 (563)
233 PRK04023 DNA polymerase II lar 27.7 60 0.0013 41.5 3.9 46 5-63 625-676 (1121)
234 KOG1815 Predicted E3 ubiquitin 27.6 92 0.002 35.8 5.2 65 4-71 68-136 (444)
235 PF05605 zf-Di19: Drought indu 27.4 32 0.00069 28.4 1.1 38 6-58 2-39 (54)
236 PRK11823 DNA repair protein Ra 27.3 31 0.00067 39.6 1.4 24 21-58 5-29 (446)
237 TIGR00143 hypF [NiFe] hydrogen 27.2 22 0.00048 43.3 0.3 54 6-63 68-131 (711)
238 KOG0978 E3 ubiquitin ligase in 26.7 40 0.00087 41.3 2.2 50 7-65 644-693 (698)
239 COG0724 RNA-binding proteins ( 26.7 67 0.0015 30.8 3.3 80 101-188 216-295 (306)
240 PF12677 DUF3797: Domain of un 26.2 28 0.00062 29.5 0.6 26 7-32 14-48 (49)
241 KOG4159 Predicted E3 ubiquitin 26.1 41 0.0009 38.7 2.1 47 6-62 84-130 (398)
242 smart00064 FYVE Protein presen 24.7 54 0.0012 27.7 2.1 41 1-41 5-45 (68)
243 KOG1040 Polyadenylation factor 24.7 28 0.00062 39.0 0.5 24 196-219 76-99 (325)
244 KOG1039 Predicted E3 ubiquitin 24.4 58 0.0013 36.9 2.8 54 5-60 160-220 (344)
245 smart00647 IBR In Between Ring 24.4 40 0.00086 27.4 1.2 33 6-38 18-56 (64)
246 KOG3039 Uncharacterized conser 24.4 50 0.0011 36.3 2.2 55 7-67 222-276 (303)
247 PF04423 Rad50_zn_hook: Rad50 24.1 68 0.0015 26.5 2.5 17 49-65 19-35 (54)
248 TIGR00595 priA primosomal prot 23.4 73 0.0016 37.3 3.4 38 7-58 223-261 (505)
249 PRK03681 hypA hydrogenase nick 23.4 38 0.00082 32.3 1.0 20 8-27 72-91 (114)
250 PF02714 DUF221: Domain of unk 23.1 77 0.0017 34.0 3.3 31 163-195 1-31 (325)
251 KOG1812 Predicted E3 ubiquitin 22.8 43 0.00092 38.1 1.4 35 7-41 307-342 (384)
252 TIGR00686 phnA alkylphosphonat 22.6 40 0.00086 32.7 0.9 25 7-31 3-28 (109)
253 KOG0825 PHD Zn-finger protein 22.2 24 0.00052 43.7 -0.7 55 1-62 118-172 (1134)
254 KOG1842 FYVE finger-containing 21.7 36 0.00078 39.9 0.5 38 3-41 177-215 (505)
255 PRK05580 primosome assembly pr 21.6 94 0.002 37.7 3.9 40 7-59 391-430 (679)
256 KOG2318 Uncharacterized conser 21.3 2.8E+02 0.0061 33.9 7.5 79 110-188 174-296 (650)
257 cd01121 Sms Sms (bacterial rad 20.8 45 0.00098 37.6 1.1 10 49-58 13-22 (372)
258 KOG3113 Uncharacterized conser 20.6 92 0.002 34.4 3.2 59 7-75 112-172 (293)
259 PF01363 FYVE: FYVE zinc finge 20.6 40 0.00086 28.5 0.4 39 2-41 5-44 (69)
260 PF13240 zinc_ribbon_2: zinc-r 20.4 59 0.0013 23.3 1.2 9 9-17 2-10 (23)
No 1
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=100.00 E-value=7.6e-79 Score=637.48 Aligned_cols=229 Identities=46% Similarity=0.955 Sum_probs=204.4
Q ss_pred CccCCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcccchhcccchhHHHHHHHHH
Q 003485 2 SDEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGMAAKCERLVAEISM 81 (816)
Q Consensus 2 sde~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Ydee~i~~~~~~~eel~~~~~~ 81 (816)
|+|+|+.||||||+||+||++|+||+||||||+||||+|+ ++++||||||||-||++.+.|.++++||+.-++..
T Consensus 10 sedeed~cplcie~mditdknf~pc~cgy~ic~fc~~~ir-----q~lngrcpacrr~y~denv~~~~~s~ee~kmel~r 84 (480)
T COG5175 10 SEDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIR-----QNLNGRCPACRRKYDDENVRYVTLSPEELKMELAR 84 (480)
T ss_pred cccccccCcccccccccccCCcccCCcccHHHHHHHHHHH-----hhccCCChHhhhhccccceeEEecCHHHHHHHHHh
Confidence 5667777999999999999999999999999999999995 57999999999999999999999999999777543
Q ss_pred --HHHHhhhhcccCcccchhccCccccccccCEEEEeCCCCCCChHH---HHHHHhhhcCCcceeEEEEeecCCcccccc
Q 003485 82 --ERKMKSQKSKTKSSEGKKQQLSSVRVIQRNLVYIVGLPLNLGDED---LLQRREYFGQYGKVLKVSMSRTAAGVIQQF 156 (816)
Q Consensus 82 --~kk~K~qk~k~k~se~RK~~LanVRVIQrNLVYVvGLP~~IaeED---LLKk~EyFGQYGKI~KIvInrd~~g~~~q~ 156 (816)
+||+++...|+.+-.+|| ||+++||||+|||||+||++.+++|+ +|+++|||||||+|.||+|++..... ..
T Consensus 85 k~erk~rekerke~e~~nrk-hlsniRVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~--ns 161 (480)
T COG5175 85 KEERKMREKERKEAEGQNRK-HLSNIRVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSL--NS 161 (480)
T ss_pred hhhhhccHHHHhhhhccccc-ccccceeeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEeccccccc--cc
Confidence 444444444555567899 99999999999999999999999999 89999999999999999999876432 11
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEEEEeecCCCccccccCCCCCCCCCCcccccCCCCCCCccHHHHHhhh
Q 003485 157 PNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAY 236 (816)
Q Consensus 157 ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~LRASfGTTKYCs~FLRg~~C~NpdCmYLHE~g~~~DsfTKeem~~~~ 236 (816)
.....++||||.++|||++||+++||..+|||.|||+|||||||++||||++|+||+||||||.|++.|+|||+||....
T Consensus 162 t~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lkatYGTTKYCtsYLRn~~CpNp~CMyLHEpg~e~Ds~tK~el~n~q 241 (480)
T COG5175 162 TASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLKATYGTTKYCTSYLRNAVCPNPDCMYLHEPGPEKDSLTKDELCNSQ 241 (480)
T ss_pred ccccceEEEEecchHHHHHHHHHhccccccCceEeeecCchHHHHHHHcCCCCCCCCeeeecCCCcccccccHHHHhhhh
Confidence 12346789999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred cc
Q 003485 237 TR 238 (816)
Q Consensus 237 ~~ 238 (816)
+.
T Consensus 242 h~ 243 (480)
T COG5175 242 HK 243 (480)
T ss_pred hh
Confidence 43
No 2
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=100.00 E-value=2.5e-59 Score=491.48 Aligned_cols=304 Identities=43% Similarity=0.692 Sum_probs=256.0
Q ss_pred CchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcccchhcccchhHHHHHHHHHHHHHhhhhcccCcccchhccCcccccc
Q 003485 29 GYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGMAAKCERLVAEISMERKMKSQKSKTKSSEGKKQQLSSVRVI 108 (816)
Q Consensus 29 GYQIC~fC~h~I~~~~~K~~~~grCPACRr~Ydee~i~~~~~~~eel~~~~~~~kk~K~qk~k~k~se~RK~~LanVRVI 108 (816)
|||||+||||||++++++ +|||||||++|++++|+++++.+++++++.++++| |+|+.+.+...+|+ ||.++|||
T Consensus 1 ~yqIc~~cwh~i~~~~~~---~grcpncr~ky~e~ki~~r~~~~~~l~~~~n~~kk-~e~e~k~~~~s~r~-~ls~~rvV 75 (327)
T KOG2068|consen 1 GYQICDSCWHHIATSAEK---KGRCPNCRTKYKEEKIVLRRVQWESLVAEKNKEKK-KEQEIKRKLSSNRK-HLSGVRVV 75 (327)
T ss_pred CceeeHHHHhcccccccc---ccCCccccCccchhhhccccccHHHHHHhhhhhhh-hHHHHhhhhhhccc-ccccchhh
Confidence 899999999999988765 79999999999999999999999999987776666 88888999999999 89999999
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 003485 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (816)
Q Consensus 109 QrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR 188 (816)
|+|+|||+||+..+++|++|++.+||||||+|.+|+++++... ........++||||.++|||.+||+.++|+.++||
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~--~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~ 153 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSS--SSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGR 153 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCccc--ccCCCCCCcccccccchHhhhhHHHHhhhHHhhhh
Confidence 9999999999999999999999999999999999999987741 12334566899999999999999999999999999
Q ss_pred EEEEeecCCCccccccCCCCCCCCCCcccccCCCCCCCccHHHHHhhhcccccccccccccccccccCCCCCCCCCcccc
Q 003485 189 SLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTRSRVQQITGTTNNLQRRSGNVLPPPFDDYCH 268 (816)
Q Consensus 189 ~LRASfGTTKYCs~FLRg~~C~NpdCmYLHE~g~~~DsfTKeem~~~~~~~~~~~~~g~~~~~qrrsg~~lPpP~~~~~~ 268 (816)
.|+|+|||||||++|||+.+|.|++||||||+++++|+|||+||+.++++. ++..++.+.++|..+.++|+|++-+..
T Consensus 154 ~lka~~gttkycs~~l~~~~c~~~~cmylhe~~~~~Ds~~k~e~~~~~~~~--~~~~~~~n~~~~~~~~~~p~~l~~~~~ 231 (327)
T KOG2068|consen 154 ALKASLGTTKYCSFYLRNDICQNPDCMYLHEIGDQEDSFTKDEMKSAKHRE--SSRKQTSNIARRSDDKLRPQPLPNLEK 231 (327)
T ss_pred hhHHhhCCCcchhHHhhhhcccCccccccccccccccccchHHHHHHhhhh--hcccccccceeccCcccCCCccccccc
Confidence 999999999999999999999999999999999999999999999999884 677888889999999999999997775
Q ss_pred cCCcccCCCCcccCCCCcccccCCCCCCCC---CCCCCCCCccccccccccCCCC-cccc-cCCCCCCCCCCCCCCCccc
Q 003485 269 INSVSTAKPSVKNAANNTASISKDPIPNGS---SARSVALPAAASWGMRASNQQS-VATS-ACSNGPSKQRPDTVGGALA 343 (816)
Q Consensus 269 ~~~~~~~~p~~k~~~~n~~~~~r~s~p~~~---~~~~~aLP~~asW~~~~s~~~~-~a~~-~~~~~~~~~~~~~~~~~~~ 343 (816)
. ...|..+..-++.+......||-.. ..+..+||.+++|++ +.+ .+|. ...+...-.+-+...++.+
T Consensus 232 ~----~s~p~~~~~~~~~~~v~~s~p~~~~~~~~~d~~~lP~~~~~~~----~l~~~~t~~~~~~~~~~~rk~~~~~t~~ 303 (327)
T KOG2068|consen 232 Q----RSAPDAQLDFSSVTSVPPSCPICYEDLDLTDSNFLPCPCGFRL----CLFCHKTISDGDGRCPGCRKPYERNTKK 303 (327)
T ss_pred c----cCCcccccCCccccccCCCCCCCCCcccccccccccccccccc----hhhhhhcccccCCCCCccCCccccCccc
Confidence 4 2267776665544456666666654 568899999999996 443 3433 2233333344444555555
Q ss_pred cccccc
Q 003485 344 FSSAVA 349 (816)
Q Consensus 344 ~ss~~~ 349 (816)
+++.+.
T Consensus 304 s~~~~~ 309 (327)
T KOG2068|consen 304 SETSVQ 309 (327)
T ss_pred cccccc
Confidence 555554
No 3
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=99.84 E-value=4.6e-22 Score=160.37 Aligned_cols=48 Identities=56% Similarity=1.481 Sum_probs=30.3
Q ss_pred CCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCc
Q 003485 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (816)
Q Consensus 9 CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Yd 61 (816)
||||+|+||+||++|+||+||||||+||||+|+ ++++|+||+||++|+
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~-----~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDIL-----ENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHT-----TSS-SB-TTT--B--
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHH-----hccCCCCCCCCCCCC
Confidence 899999999999999999999999999999996 367999999999995
No 4
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.53 E-value=4.2e-14 Score=135.14 Aligned_cols=89 Identities=19% Similarity=0.368 Sum_probs=77.1
Q ss_pred cCccccccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHh
Q 003485 101 QLSSVRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSV 180 (816)
Q Consensus 101 ~LanVRVIQrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaL 180 (816)
.+..+|... +.|||+|||+.+++++|. ++|.+||+|.+|.|.++..+. .++++|||+|.+.|+|++||+.|
T Consensus 26 ~~~~~~~~~-~~lfVgnL~~~~te~~L~---~~F~~~G~I~~v~i~~d~~tg-----~~kGfaFV~F~~~e~A~~Al~~l 96 (144)
T PLN03134 26 MLGSLRLMS-TKLFIGGLSWGTDDASLR---DAFAHFGDVVDAKVIVDRETG-----RSRGFGFVNFNDEGAATAAISEM 96 (144)
T ss_pred ccccccCCC-CEEEEeCCCCCCCHHHHH---HHHhcCCCeEEEEEEecCCCC-----CcceEEEEEECCHHHHHHHHHHc
Confidence 344445444 469999999999999986 999999999999999887543 46789999999999999999999
Q ss_pred cCCccCCeEEEEeecCCC
Q 003485 181 HGFVLEGKSLKACFGTTK 198 (816)
Q Consensus 181 NG~~LdGR~LRASfGTTK 198 (816)
||..++||.|+|.+++.+
T Consensus 97 ng~~i~Gr~l~V~~a~~~ 114 (144)
T PLN03134 97 DGKELNGRHIRVNPANDR 114 (144)
T ss_pred CCCEECCEEEEEEeCCcC
Confidence 999999999999998765
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.53 E-value=3.2e-14 Score=148.01 Aligned_cols=79 Identities=23% Similarity=0.423 Sum_probs=72.9
Q ss_pred EEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEEE
Q 003485 112 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLK 191 (816)
Q Consensus 112 LVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~LR 191 (816)
.|||+|||+.+++++|. ++|++||.|..|.|.++..++ .++|+|||+|.+.++|.+||++|||..|+||.|+
T Consensus 271 ~lfV~NL~~~~~e~~L~---~~F~~fG~v~~v~i~~d~~t~-----~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~ 342 (352)
T TIGR01661 271 CIFVYNLSPDTDETVLW---QLFGPFGAVQNVKIIRDLTTN-----QCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQ 342 (352)
T ss_pred EEEEeCCCCCCCHHHHH---HHHHhCCCeEEEEEeEcCCCC-----CccceEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 59999999999888875 999999999999999987543 4688999999999999999999999999999999
Q ss_pred EeecCCC
Q 003485 192 ACFGTTK 198 (816)
Q Consensus 192 ASfGTTK 198 (816)
|+|.+.|
T Consensus 343 V~~~~~~ 349 (352)
T TIGR01661 343 VSFKTNK 349 (352)
T ss_pred EEEccCC
Confidence 9999987
No 6
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.52 E-value=4.6e-14 Score=113.34 Aligned_cols=70 Identities=23% Similarity=0.650 Sum_probs=63.7
Q ss_pred EEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEEE
Q 003485 113 VYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLK 191 (816)
Q Consensus 113 VYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~LR 191 (816)
|||+|||+.+++++|. ++|++||+|..+.|..+..+ ..++.|||+|.+.++|++|++.|||..++|+.||
T Consensus 1 l~v~nlp~~~t~~~l~---~~f~~~g~i~~~~~~~~~~~------~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELR---DFFSQFGKIESIKVMRNSSG------KSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHH---HHHHTTSTEEEEEEEEETTS------SEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHH---HHHHHhhhcccccccccccc------cccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999986 99999999999999886322 3567999999999999999999999999999997
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.47 E-value=1.8e-13 Score=142.36 Aligned_cols=109 Identities=17% Similarity=0.359 Sum_probs=86.9
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 003485 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (816)
Q Consensus 110 rNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~ 189 (816)
+++|||+|||+++++++|. ++|++||+|..|.|.+++.++ ..+|+|||+|.+.+||.+||+.|||..+.|+.
T Consensus 3 ~~~l~V~nLp~~~~e~~l~---~~F~~~G~i~~v~i~~d~~~g-----~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~ 74 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIR---SLFTSIGEIESCKLVRDKVTG-----QSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKT 74 (352)
T ss_pred CcEEEEeCCCCCCCHHHHH---HHHHccCCEEEEEEEEcCCCC-----ccceEEEEEECcHHHHHHHHhhcccEEECCee
Confidence 6899999999999999986 999999999999999987543 35789999999999999999999999999999
Q ss_pred EEEeecCCCccccccCCCCCCCCCCcccccCCCCCCCccHHHHHhhhc
Q 003485 190 LKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYT 237 (816)
Q Consensus 190 LRASfGTTKYCs~FLRg~~C~NpdCmYLHE~g~~~DsfTKeem~~~~~ 237 (816)
|+|.|+..+.= -+ ....+|+.-+. ..+|.++|.....
T Consensus 75 i~v~~a~~~~~--~~------~~~~l~v~~l~---~~~~~~~l~~~f~ 111 (352)
T TIGR01661 75 IKVSYARPSSD--SI------KGANLYVSGLP---KTMTQHELESIFS 111 (352)
T ss_pred EEEEeeccccc--cc------ccceEEECCcc---ccCCHHHHHHHHh
Confidence 99999865421 11 12235555443 2356777766443
No 8
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.36 E-value=3.3e-12 Score=104.68 Aligned_cols=70 Identities=31% Similarity=0.642 Sum_probs=62.1
Q ss_pred EEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEEE
Q 003485 113 VYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLK 191 (816)
Q Consensus 113 VYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~LR 191 (816)
|||+|||+.+++++|. ++|.+||.|.+|.+.+++.+ ..++.|||+|.++++|.+|++.++|..++||.|+
T Consensus 1 v~i~nlp~~~~~~~l~---~~f~~~g~v~~v~~~~~~~~------~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLR---NFFSRFGPVEKVRLIKNKDG------QSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHH---HHCTTSSBEEEEEEEESTTS------SEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHH---HHHHhcCCcceEEEEeeecc------ccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999986 89999999999999987542 3578999999999999999999999999999986
No 9
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.34 E-value=1.3e-12 Score=139.27 Aligned_cols=80 Identities=25% Similarity=0.446 Sum_probs=73.2
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 003485 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (816)
Q Consensus 109 QrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR 188 (816)
.-+.|||.|||+++.|.||. .+|++||+|++|.|+-+..| ++||+||||++.+||+||-++|||..+.||
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~---aMF~kfG~VldVEIIfNERG-------SKGFGFVTmen~~dadRARa~LHgt~VEGR 164 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLR---AMFEKFGKVLDVEIIFNERG-------SKGFGFVTMENPADADRARAELHGTVVEGR 164 (376)
T ss_pred CCceeEeecCCccccCccHH---HHHHhhCceeeEEEEeccCC-------CCccceEEecChhhHHHHHHHhhcceeece
Confidence 35679999999999999985 89999999999999865433 578999999999999999999999999999
Q ss_pred EEEEeecCCC
Q 003485 189 SLKACFGTTK 198 (816)
Q Consensus 189 ~LRASfGTTK 198 (816)
+|.|.-+|.+
T Consensus 165 kIEVn~ATar 174 (376)
T KOG0125|consen 165 KIEVNNATAR 174 (376)
T ss_pred EEEEeccchh
Confidence 9999999998
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.30 E-value=6.2e-12 Score=135.59 Aligned_cols=83 Identities=17% Similarity=0.320 Sum_probs=74.4
Q ss_pred ccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC
Q 003485 107 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (816)
Q Consensus 107 VIQrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~Ld 186 (816)
.....+|||++||+.+++++|. ++|.+||+|++|.|.++..+. ..+++|||+|.++++|++||+.|||..+.
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~---~lF~~~G~V~~v~i~~d~~tg-----~srGyaFVeF~~~e~A~~Ai~~LnG~~l~ 175 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELY---ALFRTIGPINTCRIMRDYKTG-----YSFGYAFVDFGSEADSQRAIKNLNGITVR 175 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEecCCCC-----ccCcEEEEEEccHHHHHHHHHHcCCCccC
Confidence 3346789999999999999985 999999999999999887553 35789999999999999999999999999
Q ss_pred CeEEEEeecCC
Q 003485 187 GKSLKACFGTT 197 (816)
Q Consensus 187 GR~LRASfGTT 197 (816)
|++|+|.|+..
T Consensus 176 gr~i~V~~a~p 186 (346)
T TIGR01659 176 NKRLKVSYARP 186 (346)
T ss_pred Cceeeeecccc
Confidence 99999999865
No 11
>smart00362 RRM_2 RNA recognition motif.
Probab=99.29 E-value=1.5e-11 Score=96.17 Aligned_cols=72 Identities=25% Similarity=0.577 Sum_probs=64.4
Q ss_pred EEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEEE
Q 003485 112 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLK 191 (816)
Q Consensus 112 LVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~LR 191 (816)
.|||.|||..++.++|. ++|.+||+|..|.+.++. + .+.+.|||+|.+.++|.+|++.++|..+.|+.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~---~~~~~~g~v~~~~~~~~~-~------~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~ 70 (72)
T smart00362 1 TLFVGNLPPDVTEEDLK---ELFSKFGPIESVKIPKDT-G------KSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLR 70 (72)
T ss_pred CEEEcCCCCcCCHHHHH---HHHHhcCCEEEEEEecCC-C------CCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEe
Confidence 48999999999999986 899999999999998765 2 2467899999999999999999999999999998
Q ss_pred Ee
Q 003485 192 AC 193 (816)
Q Consensus 192 AS 193 (816)
|.
T Consensus 71 v~ 72 (72)
T smart00362 71 VE 72 (72)
T ss_pred eC
Confidence 74
No 12
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.29 E-value=9.6e-12 Score=115.81 Aligned_cols=83 Identities=18% Similarity=0.504 Sum_probs=72.4
Q ss_pred ccccccc--cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHh
Q 003485 103 SSVRVIQ--RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSV 180 (816)
Q Consensus 103 anVRVIQ--rNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaL 180 (816)
.+.|+-| ..++||.|||.+|+.|++. ++||+||.|..|+|..++.+ +|.|||.|++..||.+|...|
T Consensus 9 ~~~rlppevnriLyirNLp~~ITseemy---dlFGkyg~IrQIRiG~~k~T--------rGTAFVVYedi~dAk~A~dhl 77 (124)
T KOG0114|consen 9 QNIRLPPEVNRILYIRNLPFKITSEEMY---DLFGKYGTIRQIRIGNTKET--------RGTAFVVYEDIFDAKKACDHL 77 (124)
T ss_pred CCCCCChhhheeEEEecCCccccHHHHH---HHhhcccceEEEEecCccCc--------CceEEEEehHhhhHHHHHHHh
Confidence 3444443 3679999999999999996 99999999999999876654 689999999999999999999
Q ss_pred cCCccCCeEEEEeecC
Q 003485 181 HGFVLEGKSLKACFGT 196 (816)
Q Consensus 181 NG~~LdGR~LRASfGT 196 (816)
.|+.+++|.|.|-|=+
T Consensus 78 sg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 78 SGYNVDNRYLVVLYYQ 93 (124)
T ss_pred cccccCCceEEEEecC
Confidence 9999999999998743
No 13
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.28 E-value=1.2e-11 Score=129.48 Aligned_cols=76 Identities=18% Similarity=0.300 Sum_probs=68.3
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 003485 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (816)
Q Consensus 109 QrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR 188 (816)
..+.|||+|||+.+++++|. +||++||+|.+|.|.++.. .+++|||||.++++|..||. |||..|+||
T Consensus 3 ~~rtVfVgNLs~~tTE~dLr---efFS~~G~I~~V~I~~d~~--------~~GfAFVtF~d~eaAe~All-LnG~~l~gr 70 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIK---EFFSFSGDIEYVEMQSENE--------RSQIAYVTFKDPQGAETALL-LSGATIVDQ 70 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEeecCC--------CCCEEEEEeCcHHHHHHHHH-hcCCeeCCc
Confidence 35689999999999999985 9999999999999988753 25799999999999999995 999999999
Q ss_pred EEEEeecC
Q 003485 189 SLKACFGT 196 (816)
Q Consensus 189 ~LRASfGT 196 (816)
.|+|..+.
T Consensus 71 ~V~Vt~a~ 78 (260)
T PLN03120 71 SVTITPAE 78 (260)
T ss_pred eEEEEecc
Confidence 99999854
No 14
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=3e-12 Score=131.22 Aligned_cols=84 Identities=14% Similarity=0.328 Sum_probs=75.4
Q ss_pred ccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC
Q 003485 107 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (816)
Q Consensus 107 VIQrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~Ld 186 (816)
-.|+++|||+||...+++ .+| ...|-.||.|++|.|+.|.... ..++|+||+|...|||..||..||+..|.
T Consensus 7 a~~KrtlYVGGladeVte-kvL--haAFIPFGDI~dIqiPlDyesq-----kHRgFgFVefe~aEDAaaAiDNMnesEL~ 78 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTE-KVL--HAAFIPFGDIKDIQIPLDYESQ-----KHRGFGFVEFEEAEDAAAAIDNMNESELF 78 (298)
T ss_pred cccceeEEeccchHHHHH-HHH--Hhccccccchhhcccccchhcc-----cccceeEEEeeccchhHHHhhcCchhhhc
Confidence 457899999999999954 566 5899999999999999988753 45789999999999999999999999999
Q ss_pred CeEEEEeecCCC
Q 003485 187 GKSLKACFGTTK 198 (816)
Q Consensus 187 GR~LRASfGTTK 198 (816)
||+|||.||..-
T Consensus 79 GrtirVN~AkP~ 90 (298)
T KOG0111|consen 79 GRTIRVNLAKPE 90 (298)
T ss_pred ceeEEEeecCCc
Confidence 999999999774
No 15
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.25 E-value=2.1e-11 Score=114.79 Aligned_cols=80 Identities=26% Similarity=0.495 Sum_probs=72.8
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 003485 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (816)
Q Consensus 110 rNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~ 189 (816)
...|||+|||+.+++++|. ++|.+||.|..|.|..++.++ ..+|+|||+|.+.++|..||..++|..+.||.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~---~~F~~~g~~~~~~~~~d~~~~-----~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~ 186 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLR---ELFKKFGPVKRVRLVRDRETG-----KSRGFAFVEFESEESAEKAIEELNGKELEGRP 186 (306)
T ss_pred CceEEEeCCCCCCCHHHHH---HHHHhcCceeEEEeeeccccC-----ccCceEEEEecCHHHHHHHHHHcCCCeECCce
Confidence 5999999999999999996 999999999999999886432 46789999999999999999999999999999
Q ss_pred EEEeecCC
Q 003485 190 LKACFGTT 197 (816)
Q Consensus 190 LRASfGTT 197 (816)
|+|.++.-
T Consensus 187 ~~v~~~~~ 194 (306)
T COG0724 187 LRVQKAQP 194 (306)
T ss_pred eEeecccc
Confidence 99999664
No 16
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.24 E-value=2.8e-11 Score=130.55 Aligned_cols=83 Identities=23% Similarity=0.484 Sum_probs=73.3
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 003485 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (816)
Q Consensus 108 IQrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdG 187 (816)
++...|||.|||+.+++|+|. ++|++||+|+.|.|.+++.+. .++++|||+|.+.++|++||+.|||..++|
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~---~~F~~fG~V~~v~i~~d~~tg-----~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g 262 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLD---TIFGKYGQIVQKNILRDKLTG-----TPRGVAFVRFNKREEAQEAISALNNVIPEG 262 (346)
T ss_pred cccceeEEeCCCCcccHHHHH---HHHHhcCCEEEEEEeecCCCC-----ccceEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 345679999999999999985 899999999999999887543 457899999999999999999999999977
Q ss_pred --eEEEEeecCCC
Q 003485 188 --KSLKACFGTTK 198 (816)
Q Consensus 188 --R~LRASfGTTK 198 (816)
+.|+|.|+..+
T Consensus 263 ~~~~l~V~~a~~~ 275 (346)
T TIGR01659 263 GSQPLTVRLAEEH 275 (346)
T ss_pred CceeEEEEECCcc
Confidence 78999998765
No 17
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.24 E-value=2.3e-11 Score=139.58 Aligned_cols=81 Identities=22% Similarity=0.404 Sum_probs=73.8
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 003485 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (816)
Q Consensus 110 rNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~ 189 (816)
.+.|||+||++.+++++|. ++|++||+|..+.|.++..++ ..+|+|||+|.+.++|.+||..|||+.++|+.
T Consensus 204 ~~rLfVgnLp~~vteedLk---~lFs~FG~I~svrl~~D~~tg-----ksKGfGFVeFe~~e~A~kAI~amNg~elgGr~ 275 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIK---SVFEAFGEIVKCQLARAPTGR-----GHKGYGFIEYNNLQSQSEAIASMNLFDLGGQY 275 (612)
T ss_pred cceEEeecCCCCCCHHHHH---HHHhhcCCeeEEEEEecCCCC-----CcCCeEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 3689999999999998885 899999999999999887543 35789999999999999999999999999999
Q ss_pred EEEeecCCC
Q 003485 190 LKACFGTTK 198 (816)
Q Consensus 190 LRASfGTTK 198 (816)
|||.++.++
T Consensus 276 LrV~kAi~p 284 (612)
T TIGR01645 276 LRVGKCVTP 284 (612)
T ss_pred EEEEecCCC
Confidence 999999876
No 18
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.24 E-value=5.3e-11 Score=93.48 Aligned_cols=74 Identities=27% Similarity=0.563 Sum_probs=66.4
Q ss_pred EEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEEE
Q 003485 112 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLK 191 (816)
Q Consensus 112 LVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~LR 191 (816)
.|||.|||+.++++++. ++|.+||.|.++.+.++..+ .+.+.|||+|.+.++|..|++.++|..++|+.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~---~~~~~~g~i~~~~~~~~~~~------~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~ 71 (74)
T cd00590 1 TLFVGNLPPDVTEEDLR---ELFSKFGKVESVRIVRDKDT------KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLR 71 (74)
T ss_pred CEEEeCCCCccCHHHHH---HHHHhcCCEEEEEEeeCCCC------CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 48999999999998886 89999999999999876543 2467899999999999999999999999999999
Q ss_pred Eee
Q 003485 192 ACF 194 (816)
Q Consensus 192 ASf 194 (816)
|.|
T Consensus 72 v~~ 74 (74)
T cd00590 72 VEF 74 (74)
T ss_pred EeC
Confidence 875
No 19
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.24 E-value=2.3e-11 Score=135.95 Aligned_cols=83 Identities=27% Similarity=0.396 Sum_probs=74.4
Q ss_pred ccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC
Q 003485 107 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (816)
Q Consensus 107 VIQrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~Ld 186 (816)
..+...|||+||++.+++++|. ++|++||.|..|.|.++..+ .++|+|||+|.+.++|.+||..|||..++
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~---~~F~~~G~i~~~~i~~d~~g------~~~g~gfV~f~~~~~A~~A~~~~~g~~~~ 352 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLR---ELFSECGEITSAKVMLDEKG------VSRGFGFVCFSNPEEANRAVTEMHGRMLG 352 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHH---HHHHhcCCeEEEEEEECCCC------CcCCeEEEEeCCHHHHHHHHHHhcCCeeC
Confidence 3455679999999999999985 99999999999999988533 35789999999999999999999999999
Q ss_pred CeEEEEeecCCC
Q 003485 187 GKSLKACFGTTK 198 (816)
Q Consensus 187 GR~LRASfGTTK 198 (816)
||.|+|.|+..|
T Consensus 353 gk~l~V~~a~~k 364 (562)
T TIGR01628 353 GKPLYVALAQRK 364 (562)
T ss_pred CceeEEEeccCc
Confidence 999999999876
No 20
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=3.1e-11 Score=125.16 Aligned_cols=82 Identities=18% Similarity=0.399 Sum_probs=75.7
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 003485 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (816)
Q Consensus 109 QrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR 188 (816)
-.++|-|.||+.+.+++||. |+|.+||.|.+|.|.+++.++ ..+|||||+|.+.+||++||..|||.-++.-
T Consensus 188 D~~tvRvtNLsed~~E~dL~---eLf~~fg~i~rvylardK~TG-----~~kGFAFVtF~sRddA~rAI~~LnG~gyd~L 259 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLE---ELFRPFGPITRVYLARDKETG-----LSKGFAFVTFESRDDAARAIADLNGYGYDNL 259 (270)
T ss_pred ccceeEEecCccccChhHHH---HHhhccCccceeEEEEccccC-----cccceEEEEEecHHHHHHHHHHccCcccceE
Confidence 35778899999999999985 999999999999999999875 4689999999999999999999999999999
Q ss_pred EEEEeecCCC
Q 003485 189 SLKACFGTTK 198 (816)
Q Consensus 189 ~LRASfGTTK 198 (816)
+|||.|++.+
T Consensus 260 ILrvEwskP~ 269 (270)
T KOG0122|consen 260 ILRVEWSKPS 269 (270)
T ss_pred EEEEEecCCC
Confidence 9999999875
No 21
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=2.1e-11 Score=121.57 Aligned_cols=78 Identities=17% Similarity=0.296 Sum_probs=70.9
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 003485 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (816)
Q Consensus 110 rNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~ 189 (816)
...|||+||+.++++.||- ..|+.||+|.+|+|.+. +.|||||+|+++.||++|+.+|||..|+|..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE---~~F~~yG~lrsvWvArn----------PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r 76 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELE---RAFSKYGPLRSVWVARN----------PPGFAFVEFEDPRDAEDAVRYLDGKDICGSR 76 (195)
T ss_pred CceEEeccCCCCcchHHHH---HHHHhcCcceeEEEeec----------CCCceEEeccCcccHHHHHhhcCCccccCce
Confidence 4679999999999999986 89999999999999874 3478999999999999999999999999999
Q ss_pred EEEeecCCCcc
Q 003485 190 LKACFGTTKYC 200 (816)
Q Consensus 190 LRASfGTTKYC 200 (816)
|+|.+-+-++-
T Consensus 77 ~rVE~S~G~~r 87 (195)
T KOG0107|consen 77 IRVELSTGRPR 87 (195)
T ss_pred EEEEeecCCcc
Confidence 99999877754
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.21 E-value=4.4e-11 Score=129.62 Aligned_cols=79 Identities=22% Similarity=0.446 Sum_probs=72.3
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 003485 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (816)
Q Consensus 110 rNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~ 189 (816)
...|||+|||..+++++|. ++|++||.|..|.|.++..++ ..+|+|||+|.+.++|.+||+.|||..+.|+.
T Consensus 186 ~~~l~v~nl~~~~te~~l~---~~f~~~G~i~~v~~~~d~~~g-----~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~ 257 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELR---QIFEPFGDIEDVQLHRDPETG-----RSKGFGFIQFHDAEEAKEALEVMNGFELAGRP 257 (457)
T ss_pred CCEEEEcCCCCCCCHHHHH---HHHHhcCCeEEEEEEEcCCCC-----ccceEEEEEECCHHHHHHHHHhcCCcEECCEE
Confidence 5789999999999999985 899999999999999887542 35789999999999999999999999999999
Q ss_pred EEEeecC
Q 003485 190 LKACFGT 196 (816)
Q Consensus 190 LRASfGT 196 (816)
|+|.|+.
T Consensus 258 i~v~~a~ 264 (457)
T TIGR01622 258 IKVGYAQ 264 (457)
T ss_pred EEEEEcc
Confidence 9999987
No 23
>smart00360 RRM RNA recognition motif.
Probab=99.21 E-value=5e-11 Score=92.63 Aligned_cols=71 Identities=25% Similarity=0.521 Sum_probs=62.7
Q ss_pred EeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEEEEe
Q 003485 115 IVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKAC 193 (816)
Q Consensus 115 VvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~LRAS 193 (816)
|.|||..+++++|. ++|.+||.|..|.|.+++.+. .++++|||+|.+.++|.+||..++|..++|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~---~~f~~~g~v~~~~i~~~~~~~-----~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELR---ELFSKFGKIESVRLVRDKDTG-----KSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHH---HHHHhhCCEeEEEEEeCCCCC-----CCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999986 899999999999998765422 356799999999999999999999999999999874
No 24
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.20 E-value=4.6e-11 Score=137.14 Aligned_cols=79 Identities=19% Similarity=0.367 Sum_probs=70.8
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 003485 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (816)
Q Consensus 110 rNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~ 189 (816)
...|||+||++.+++++|. ++|.+||.|.+|.|.+++.++ .++|+|||+|.+.++|.+||+.|||..++||.
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr---~lF~~fG~I~sV~I~~D~~Tg-----kskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~ 178 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIR---RAFDPFGPIKSINMSWDPATG-----KHKGFAFVEYEVPEAAQLALEQMNGQMLGGRN 178 (612)
T ss_pred CCEEEEcCCCCCCCHHHHH---HHHHccCCEEEEEEeecCCCC-----CcCCeEEEEeCcHHHHHHHHHhcCCeEEecce
Confidence 3579999999999998885 899999999999999887653 46789999999999999999999999999999
Q ss_pred EEEeecC
Q 003485 190 LKACFGT 196 (816)
Q Consensus 190 LRASfGT 196 (816)
|+|.+..
T Consensus 179 IkV~rp~ 185 (612)
T TIGR01645 179 IKVGRPS 185 (612)
T ss_pred eeecccc
Confidence 9998643
No 25
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.20 E-value=2.9e-11 Score=123.81 Aligned_cols=87 Identities=21% Similarity=0.430 Sum_probs=77.1
Q ss_pred ccccC-EEEEeCCCCCCChHHHHHH-HhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCc
Q 003485 107 VIQRN-LVYIVGLPLNLGDEDLLQR-REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFV 184 (816)
Q Consensus 107 VIQrN-LVYVvGLP~~IaeEDLLKk-~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~ 184 (816)
.+..| ++||.+|+.+|..++|+|. +.+|+|||+|++|++.+.. .-+|.|||.|.+.+.|..|+.+|+|+.
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~--------KmRGQA~VvFk~~~~As~A~r~l~gfp 76 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTP--------KMRGQAFVVFKETEAASAALRALQGFP 76 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCC--------CccCceEEEecChhHHHHHHHHhcCCc
Confidence 34444 9999999999999998765 8999999999999998754 347899999999999999999999999
Q ss_pred cCCeEEEEeecCCCccc
Q 003485 185 LEGKSLKACFGTTKYCH 201 (816)
Q Consensus 185 LdGR~LRASfGTTKYCs 201 (816)
+-|+++|+.||.++-|-
T Consensus 77 FygK~mriqyA~s~sdi 93 (221)
T KOG4206|consen 77 FYGKPMRIQYAKSDSDI 93 (221)
T ss_pred ccCchhheecccCccch
Confidence 99999999999988554
No 26
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.19 E-value=7.6e-11 Score=129.20 Aligned_cols=81 Identities=17% Similarity=0.297 Sum_probs=72.8
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 003485 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (816)
Q Consensus 109 QrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR 188 (816)
+.+.|||+|||+.+++++|. ++|.+||.|..+.|.++..++ ..+|+|||+|.+.++|..||+.|||..++|+
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~---~~f~~~G~i~~~~~~~~~~~g-----~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~ 365 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIK---ELLESFGDLKAFNLIKDIATG-----LSKGYAFCEYKDPSVTDVAIAALNGKDTGDN 365 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCeeEEEEEecCCCC-----CcCeEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 45789999999999998885 999999999999998876543 3578999999999999999999999999999
Q ss_pred EEEEeecCC
Q 003485 189 SLKACFGTT 197 (816)
Q Consensus 189 ~LRASfGTT 197 (816)
.|+|.++..
T Consensus 366 ~l~v~~a~~ 374 (509)
T TIGR01642 366 KLHVQRACV 374 (509)
T ss_pred EEEEEECcc
Confidence 999999854
No 27
>PLN03213 repressor of silencing 3; Provisional
Probab=99.18 E-value=4e-11 Score=133.02 Aligned_cols=79 Identities=25% Similarity=0.384 Sum_probs=71.0
Q ss_pred CEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCH--HHHHHHHHHhcCCccCCe
Q 003485 111 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKE--EEAVRCIQSVHGFVLEGK 188 (816)
Q Consensus 111 NLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~--EDA~rAIqaLNG~~LdGR 188 (816)
..||||||++.++++||. ..|++||.|.+|.|+|++ .+|||||+|... .++.+||..|||..+.||
T Consensus 11 MRIYVGNLSydVTEDDLr---avFSeFGsVkdVEIpRET---------GRGFAFVEMssdddaEeeKAISaLNGAEWKGR 78 (759)
T PLN03213 11 VRLHVGGLGESVGRDDLL---KIFSPMGTVDAVEFVRTK---------GRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGG 78 (759)
T ss_pred eEEEEeCCCCCCCHHHHH---HHHHhcCCeeEEEEeccc---------CCceEEEEecCCcHHHHHHHHHHhcCCeecCc
Confidence 568999999999999996 899999999999999543 168999999987 789999999999999999
Q ss_pred EEEEeecCCCccc
Q 003485 189 SLKACFGTTKYCH 201 (816)
Q Consensus 189 ~LRASfGTTKYCs 201 (816)
.|||.-|...|=.
T Consensus 79 ~LKVNKAKP~YLe 91 (759)
T PLN03213 79 RLRLEKAKEHYLA 91 (759)
T ss_pred eeEEeeccHHHHH
Confidence 9999999888643
No 28
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=5.9e-11 Score=124.56 Aligned_cols=76 Identities=16% Similarity=0.403 Sum_probs=68.2
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 003485 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (816)
Q Consensus 109 QrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR 188 (816)
-..+|||+|++.-+++++ | ++.|.+||.|..|+|-+++ |+|||.|+++|.|.+||..|||..+.|.
T Consensus 163 ~NtsVY~G~I~~~lte~~-m--r~~Fs~fG~I~EVRvFk~q-----------GYaFVrF~tkEaAahAIv~mNntei~G~ 228 (321)
T KOG0148|consen 163 DNTSVYVGNIASGLTEDL-M--RQTFSPFGPIQEVRVFKDQ-----------GYAFVRFETKEAAAHAIVQMNNTEIGGQ 228 (321)
T ss_pred CCceEEeCCcCccccHHH-H--HHhcccCCcceEEEEeccc-----------ceEEEEecchhhHHHHHHHhcCceeCce
Confidence 357899999999887654 5 3899999999999998763 5799999999999999999999999999
Q ss_pred EEEEeecCCC
Q 003485 189 SLKACFGTTK 198 (816)
Q Consensus 189 ~LRASfGTTK 198 (816)
.+||+||.+-
T Consensus 229 ~VkCsWGKe~ 238 (321)
T KOG0148|consen 229 LVRCSWGKEG 238 (321)
T ss_pred EEEEeccccC
Confidence 9999999876
No 29
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.17 E-value=7.7e-11 Score=131.88 Aligned_cols=109 Identities=15% Similarity=0.352 Sum_probs=84.3
Q ss_pred EEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEEE
Q 003485 112 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLK 191 (816)
Q Consensus 112 LVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~LR 191 (816)
.|||+|||+++++++|. ++|++||.|.+|.|.++..+. .+.|+|||+|.+.+||++||..+|+..+.|+.||
T Consensus 2 sl~VgnLp~~vte~~L~---~~F~~~G~v~~v~v~~d~~t~-----~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~ 73 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLY---DLFKPFGPVLSVRVCRDSVTR-----RSLGYGYVNFQNPADAERALETMNFKRLGGKPIR 73 (562)
T ss_pred eEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEecCCCC-----CcceEEEEEECCHHHHHHHHHHhCCCEECCeeEE
Confidence 59999999999999986 999999999999999987643 3578999999999999999999999999999999
Q ss_pred EeecCCCccccccCCCCCCCCCCcccccCCCCCCCccHHHHHhhhc
Q 003485 192 ACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYT 237 (816)
Q Consensus 192 ASfGTTKYCs~FLRg~~C~NpdCmYLHE~g~~~DsfTKeem~~~~~ 237 (816)
+.|....- ..........|+.-+. ...|.++|.....
T Consensus 74 i~~s~~~~------~~~~~~~~~vfV~nLp---~~~~~~~L~~~F~ 110 (562)
T TIGR01628 74 IMWSQRDP------SLRRSGVGNIFVKNLD---KSVDNKALFDTFS 110 (562)
T ss_pred eecccccc------cccccCCCceEEcCCC---ccCCHHHHHHHHH
Confidence 99875321 0111122345555443 3556677765443
No 30
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.16 E-value=1e-10 Score=93.51 Aligned_cols=55 Identities=20% Similarity=0.518 Sum_probs=49.2
Q ss_pred HhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEEEEeec
Q 003485 131 REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKACFG 195 (816)
Q Consensus 131 ~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~LRASfG 195 (816)
+++|++||+|.+|.+.++. ++.|||+|.+.++|.+|++.|||..++|++|+|.|+
T Consensus 2 ~~~f~~fG~V~~i~~~~~~----------~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 2 YKLFSKFGEVKKIKIFKKK----------RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHTTTS-EEEEEEETTS----------TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred hHHhCCcccEEEEEEEeCC----------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 3899999999999997643 368999999999999999999999999999999985
No 31
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=3.6e-11 Score=124.00 Aligned_cols=78 Identities=17% Similarity=0.360 Sum_probs=68.5
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 003485 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (816)
Q Consensus 109 QrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR 188 (816)
.-..|||+||+|+..+|+|. +||.|||+|+..+|+.|+.++ +++|++||||.+.|.|.||.+..| -+||||
T Consensus 11 ~~TKifVggL~w~T~~~~l~---~yFeqfGeI~eavvitd~~t~-----rskGyGfVTf~d~~aa~rAc~dp~-piIdGR 81 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLR---RYFEQFGEIVEAVVITDKNTG-----RSKGYGFVTFRDAEAATRACKDPN-PIIDGR 81 (247)
T ss_pred eEEEEEEcCcccccchHHHH---HHHHHhCceEEEEEEeccCCc-----cccceeeEEeecHHHHHHHhcCCC-Cccccc
Confidence 45679999999999998875 899999999999999998764 467889999999999999999776 578999
Q ss_pred EEEEeec
Q 003485 189 SLKACFG 195 (816)
Q Consensus 189 ~LRASfG 195 (816)
+-.|.+|
T Consensus 82 ~aNcnlA 88 (247)
T KOG0149|consen 82 KANCNLA 88 (247)
T ss_pred ccccchh
Confidence 9998764
No 32
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.12 E-value=2e-10 Score=127.54 Aligned_cols=77 Identities=21% Similarity=0.390 Sum_probs=68.0
Q ss_pred ccCEEEEeCCCC-CCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 003485 109 QRNLVYIVGLPL-NLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (816)
Q Consensus 109 QrNLVYVvGLP~-~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdG 187 (816)
+...|||+||++ .+++++|. ++|++||.|.+|.|.+++ +++|||+|.+.++|.+||+.|||..|+|
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~---~lF~~yG~V~~vki~~~~----------~g~afV~f~~~~~A~~Ai~~lng~~l~g 340 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLF---NLFCVYGNVERVKFMKNK----------KETALIEMADPYQAQLALTHLNGVKLFG 340 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHH---HHHHhcCCeEEEEEEeCC----------CCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 346899999998 68887774 999999999999998752 4689999999999999999999999999
Q ss_pred eEEEEeecCCC
Q 003485 188 KSLKACFGTTK 198 (816)
Q Consensus 188 R~LRASfGTTK 198 (816)
+.|+|+|+..+
T Consensus 341 ~~l~v~~s~~~ 351 (481)
T TIGR01649 341 KPLRVCPSKQQ 351 (481)
T ss_pred ceEEEEEcccc
Confidence 99999986443
No 33
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=2.2e-10 Score=119.99 Aligned_cols=81 Identities=26% Similarity=0.430 Sum_probs=72.0
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 003485 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (816)
Q Consensus 110 rNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~ 189 (816)
.-.|||.||.++. +|.+| +++||+||.|..|+|.||..+. .=+|++||++.+.+||..||..|||..+++|+
T Consensus 278 g~ciFvYNLspd~-de~~L--WQlFgpFGAv~nVKvirD~ttn-----kCKGfgFVtMtNYdEAamAi~sLNGy~lg~rv 349 (360)
T KOG0145|consen 278 GWCIFVYNLSPDA-DESIL--WQLFGPFGAVTNVKVIRDFTTN-----KCKGFGFVTMTNYDEAAMAIASLNGYRLGDRV 349 (360)
T ss_pred eeEEEEEecCCCc-hHhHH--HHHhCcccceeeEEEEecCCcc-----cccceeEEEecchHHHHHHHHHhcCccccceE
Confidence 3579999999996 56666 6999999999999999997652 23578999999999999999999999999999
Q ss_pred EEEeecCCC
Q 003485 190 LKACFGTTK 198 (816)
Q Consensus 190 LRASfGTTK 198 (816)
|.|+|-|.|
T Consensus 350 LQVsFKtnk 358 (360)
T KOG0145|consen 350 LQVSFKTNK 358 (360)
T ss_pred EEEEEecCC
Confidence 999999887
No 34
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=1e-10 Score=122.85 Aligned_cols=81 Identities=21% Similarity=0.363 Sum_probs=74.3
Q ss_pred CEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEE
Q 003485 111 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 190 (816)
Q Consensus 111 NLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~L 190 (816)
=-|||+-|.+.|..|+|. |.|.+||+|.+.+|+||..+. .++|++||.|-+++||++||+.|||..|++|.|
T Consensus 63 fhvfvgdls~eI~~e~lr---~aF~pFGevS~akvirD~~T~-----KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~I 134 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLR---EAFAPFGEVSDAKVIRDMNTG-----KSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTI 134 (321)
T ss_pred eeEEehhcchhcchHHHH---HHhccccccccceEeecccCC-----cccceeEEeccchHHHHHHHHHhCCeeecccee
Confidence 358999999999988874 999999999999999997653 567889999999999999999999999999999
Q ss_pred EEeecCCCc
Q 003485 191 KACFGTTKY 199 (816)
Q Consensus 191 RASfGTTKY 199 (816)
|-.|+|.|=
T Consensus 135 RTNWATRKp 143 (321)
T KOG0148|consen 135 RTNWATRKP 143 (321)
T ss_pred eccccccCc
Confidence 999999995
No 35
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=2.4e-11 Score=121.95 Aligned_cols=77 Identities=21% Similarity=0.530 Sum_probs=71.8
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 003485 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (816)
Q Consensus 110 rNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~ 189 (816)
.--|||+|||+.+++.||| -.|+|||+|++|.++||..++ .+.||||..|+++.....|+..|||..+.||+
T Consensus 35 sA~Iyiggl~~~LtEgDil---~VFSqyGe~vdinLiRDk~TG-----KSKGFaFLcYEDQRSTILAVDN~NGiki~gRt 106 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDIL---CVFSQYGEIVDINLIRDKKTG-----KSKGFAFLCYEDQRSTILAVDNLNGIKILGRT 106 (219)
T ss_pred ceEEEECCCcccccCCcEE---EEeeccCceEEEEEEecCCCC-----cccceEEEEecCccceEEEEeccCCceeccee
Confidence 3469999999999999999 899999999999999998775 57899999999999999999999999999999
Q ss_pred EEEee
Q 003485 190 LKACF 194 (816)
Q Consensus 190 LRASf 194 (816)
|||..
T Consensus 107 irVDH 111 (219)
T KOG0126|consen 107 IRVDH 111 (219)
T ss_pred EEeee
Confidence 99984
No 36
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.08 E-value=1e-10 Score=119.39 Aligned_cols=82 Identities=20% Similarity=0.357 Sum_probs=72.9
Q ss_pred ccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC
Q 003485 107 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (816)
Q Consensus 107 VIQrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~Ld 186 (816)
|--...|-|-||.+..+.++|. -.|.+||+|-+|.|.+|+.+. .++|||||.|..+.||++|+.+|||.+||
T Consensus 10 v~gm~SLkVdNLTyRTspd~Lr---rvFekYG~vgDVyIPrdr~Tr-----~sRgFaFVrf~~k~daedA~damDG~~ld 81 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLR---RVFEKYGRVGDVYIPRDRYTR-----QSRGFAFVRFHDKRDAEDALDAMDGAVLD 81 (256)
T ss_pred cccceeEEecceeccCCHHHHH---HHHHHhCcccceecccccccc-----cccceeEEEeeecchHHHHHHhhcceeec
Confidence 3345678899999999888875 799999999999999998764 46899999999999999999999999999
Q ss_pred CeEEEEeecC
Q 003485 187 GKSLKACFGT 196 (816)
Q Consensus 187 GR~LRASfGT 196 (816)
||.|+|++|.
T Consensus 82 gRelrVq~ar 91 (256)
T KOG4207|consen 82 GRELRVQMAR 91 (256)
T ss_pred cceeeehhhh
Confidence 9999999864
No 37
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.08 E-value=3.7e-10 Score=122.48 Aligned_cols=116 Identities=19% Similarity=0.300 Sum_probs=88.2
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 003485 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (816)
Q Consensus 110 rNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~ 189 (816)
..+|||+|||+.+++++|. ++|++||+|..|.|.+++.++ ..+|+|||+|.+.++|.+||. |+|..+.|+.
T Consensus 89 ~~~l~V~nlp~~~~~~~l~---~~F~~~G~v~~v~i~~d~~~~-----~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~ 159 (457)
T TIGR01622 89 DRTVFVLQLALKARERDLY---EFFSKVGKVRDVQCIKDRNSR-----RSKGVAYVEFYDVESVIKALA-LTGQMLLGRP 159 (457)
T ss_pred CcEEEEeCCCCCCCHHHHH---HHHHhcCCeeEEEEeecCCCC-----CcceEEEEEECCHHHHHHHHH-hCCCEECCee
Confidence 5689999999999999986 999999999999999886543 457899999999999999996 9999999999
Q ss_pred EEEeecCCCccccc--cC--CCCCCCCCCcccccCCCCCCCccHHHHHhhhc
Q 003485 190 LKACFGTTKYCHAW--LR--NVPCTNPDCLYLHEVGSQEDSFTKDEIISAYT 237 (816)
Q Consensus 190 LRASfGTTKYCs~F--LR--g~~C~NpdCmYLHE~g~~~DsfTKeem~~~~~ 237 (816)
|+|.+...+.-..- .. ...-.+..++|+.-+. ...|.++|.....
T Consensus 160 i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~---~~~te~~l~~~f~ 208 (457)
T TIGR01622 160 IIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLH---FNITEQELRQIFE 208 (457)
T ss_pred eEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCC---CCCCHHHHHHHHH
Confidence 99987644321110 00 1112234667776665 4578888876543
No 38
>smart00361 RRM_1 RNA recognition motif.
Probab=99.05 E-value=5.1e-10 Score=94.13 Aligned_cols=64 Identities=31% Similarity=0.533 Sum_probs=50.5
Q ss_pred hHHHHHHHhhhc----CCcceeEEE-EeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEEEEe
Q 003485 124 DEDLLQRREYFG----QYGKVLKVS-MSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKAC 193 (816)
Q Consensus 124 eEDLLKk~EyFG----QYGKI~KIv-Inrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~LRAS 193 (816)
+++|. ++|. +||+|.+|. |..++.+. .+.++|+|||+|.+.+||.+||+.|||..++||.|+|+
T Consensus 2 ~~~l~---~~~~~~~~~fG~v~~v~~v~~~~~~~---~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFE---REFSEEEEYFGEVGKINKIYIDNVGY---ENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHH---HHHHHHHHhcCCeeEEEEEEeCCCCC---CCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 34554 7888 999999985 54444321 12467899999999999999999999999999999974
No 39
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.04 E-value=4.3e-10 Score=128.70 Aligned_cols=90 Identities=19% Similarity=0.501 Sum_probs=76.1
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC-C
Q 003485 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE-G 187 (816)
Q Consensus 109 QrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~Ld-G 187 (816)
+...|||+|||+.+++++|. ++|.+||.|.+|+|++|..+ .++++|||+|.+.|+|++||+.|||..+. |
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~---~~F~~~G~I~~vrl~~D~sG------~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~G 127 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELV---PLFEKAGPIYELRLMMDFSG------QNRGYAFVTFCGKEEAKEAVKLLNNYEIRPG 127 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHH---HHHHhhCCEEEEEEEECCCC------CccceEEEEeCCHHHHHHHHHHcCCCeecCC
Confidence 35789999999999999885 99999999999999998433 35789999999999999999999999984 8
Q ss_pred eEEEEeecCCCccccccCCCC
Q 003485 188 KSLKACFGTTKYCHAWLRNVP 208 (816)
Q Consensus 188 R~LRASfGTTKYCs~FLRg~~ 208 (816)
|.|.|..... -|.-|++|.+
T Consensus 128 r~l~V~~S~~-~~rLFVgNLP 147 (578)
T TIGR01648 128 RLLGVCISVD-NCRLFVGGIP 147 (578)
T ss_pred cccccccccc-CceeEeecCC
Confidence 9998887654 3566666643
No 40
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.04 E-value=3.1e-10 Score=109.10 Aligned_cols=78 Identities=15% Similarity=0.346 Sum_probs=71.6
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 003485 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (816)
Q Consensus 109 QrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR 188 (816)
+.++|||+||+.-+++|.|. |+|++.|.|.+|+|..|+-+. .+.||.||.|-..+||+.|++.++|+.||.|
T Consensus 35 ~S~tvyVgNlSfyttEEqiy---ELFs~cG~irriiMGLdr~kk-----tpCGFCFVeyy~~~dA~~AlryisgtrLddr 106 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIY---ELFSKCGDIRRIIMGLDRFKK-----TPCGFCFVEYYSRDDAEDALRYISGTRLDDR 106 (153)
T ss_pred hcceEEEeeeeeeecHHHHH---HHHHhccchheeEeccccCCc-----CccceEEEEEecchhHHHHHHHhccCccccc
Confidence 37999999999999999996 999999999999998776543 4678999999999999999999999999999
Q ss_pred EEEEee
Q 003485 189 SLKACF 194 (816)
Q Consensus 189 ~LRASf 194 (816)
+|++.|
T Consensus 107 ~ir~D~ 112 (153)
T KOG0121|consen 107 PIRIDW 112 (153)
T ss_pred ceeeec
Confidence 999986
No 41
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.01 E-value=8.8e-10 Score=114.54 Aligned_cols=75 Identities=13% Similarity=0.286 Sum_probs=66.7
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 003485 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (816)
Q Consensus 110 rNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~ 189 (816)
..+|||+||++.+++++|. +||++||+|.+|.|.++... +++|||+|.++++|..|| .|+|..|.|+.
T Consensus 5 g~TV~V~NLS~~tTE~dLr---efFS~~G~I~~V~I~~D~et--------~gfAfVtF~d~~aaetAl-lLnGa~l~d~~ 72 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVY---DFFSHCGAIEHVEIIRSGEY--------ACTAYVTFKDAYALETAV-LLSGATIVDQR 72 (243)
T ss_pred ceEEEEecCCCCCCHHHHH---HHHHhcCCeEEEEEecCCCc--------ceEEEEEECCHHHHHHHH-hcCCCeeCCce
Confidence 3579999999999999985 99999999999999988532 468999999999999999 69999999999
Q ss_pred EEEeecC
Q 003485 190 LKACFGT 196 (816)
Q Consensus 190 LRASfGT 196 (816)
|.|.-..
T Consensus 73 I~It~~~ 79 (243)
T PLN03121 73 VCITRWG 79 (243)
T ss_pred EEEEeCc
Confidence 9988544
No 42
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.98 E-value=1.2e-09 Score=125.07 Aligned_cols=72 Identities=22% Similarity=0.458 Sum_probs=66.1
Q ss_pred CEEEEeCCCCCCChHHHHHHHhhhcCC--cceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 003485 111 NLVYIVGLPLNLGDEDLLQRREYFGQY--GKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (816)
Q Consensus 111 NLVYVvGLP~~IaeEDLLKk~EyFGQY--GKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR 188 (816)
..|||+||++.+++|+|. ++|++| |+|.+|.+.+ ++|||+|.+.++|++||+.|||..|+|+
T Consensus 234 k~LfVgNL~~~~tee~L~---~~F~~f~~G~I~rV~~~r-------------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr 297 (578)
T TIGR01648 234 KILYVRNLMTTTTEEIIE---KSFSEFKPGKVERVKKIR-------------DYAFVHFEDREDAVKAMDELNGKELEGS 297 (578)
T ss_pred cEEEEeCCCCCCCHHHHH---HHHHhcCCCceEEEEeec-------------CeEEEEeCCHHHHHHHHHHhCCCEECCE
Confidence 579999999999988875 899999 9999997653 4799999999999999999999999999
Q ss_pred EEEEeecCCC
Q 003485 189 SLKACFGTTK 198 (816)
Q Consensus 189 ~LRASfGTTK 198 (816)
.|+|+|++.+
T Consensus 298 ~I~V~~Akp~ 307 (578)
T TIGR01648 298 EIEVTLAKPV 307 (578)
T ss_pred EEEEEEccCC
Confidence 9999999765
No 43
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.97 E-value=5.6e-10 Score=112.10 Aligned_cols=81 Identities=20% Similarity=0.272 Sum_probs=72.9
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 003485 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (816)
Q Consensus 108 IQrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdG 187 (816)
-|.++|||+||+++++++- | +|+|.|-|+|++|.|.+++.+. ...|++||+|.++|||.-||+-||+..|-|
T Consensus 7 nqd~tiyvgnld~kvs~~~-l--~EL~iqagpVv~i~iPkDrv~~-----~~qGygF~Ef~~eedadYAikiln~VkLYg 78 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEEL-L--YELFIQAGPVVNLHIPKDRVTQ-----KHQGYGFAEFRTEEDADYAIKILNMVKLYG 78 (203)
T ss_pred CCCceEEEecCCHHHHHHH-H--HHHHHhcCceeeeecchhhhcc-----cccceeEEEEechhhhHHHHHHHHHHHhcC
Confidence 4778999999999997754 4 5999999999999999998763 346899999999999999999999999999
Q ss_pred eEEEEeecC
Q 003485 188 KSLKACFGT 196 (816)
Q Consensus 188 R~LRASfGT 196 (816)
|+|||.-++
T Consensus 79 rpIrv~kas 87 (203)
T KOG0131|consen 79 RPIRVNKAS 87 (203)
T ss_pred ceeEEEecc
Confidence 999999887
No 44
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=9.6e-10 Score=110.95 Aligned_cols=84 Identities=15% Similarity=0.361 Sum_probs=72.0
Q ss_pred CEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEE
Q 003485 111 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 190 (816)
Q Consensus 111 NLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~L 190 (816)
..|||+|||..|.+.||- ++|-+||+|..|.+...+. +-.+|||+|++..||+.||..-||..+||..|
T Consensus 7 ~~iyvGNLP~diRekeie---DlFyKyg~i~~ieLK~r~g--------~ppfafVeFEd~RDAeDAiygRdGYdydg~rL 75 (241)
T KOG0105|consen 7 RRIYVGNLPGDIREKEIE---DLFYKYGRIREIELKNRPG--------PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRL 75 (241)
T ss_pred ceEEecCCCcchhhccHH---HHHhhhcceEEEEeccCCC--------CCCeeEEEecCccchhhhhhcccccccCcceE
Confidence 468999999999999996 9999999999999864332 34689999999999999999999999999999
Q ss_pred EEeecCCCccccccC
Q 003485 191 KACFGTTKYCHAWLR 205 (816)
Q Consensus 191 RASfGTTKYCs~FLR 205 (816)
||.|..+-.-+..-+
T Consensus 76 RVEfprggr~s~~~~ 90 (241)
T KOG0105|consen 76 RVEFPRGGRSSSDRR 90 (241)
T ss_pred EEEeccCCCcccccc
Confidence 999988765443333
No 45
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.94 E-value=2.2e-09 Score=118.55 Aligned_cols=104 Identities=21% Similarity=0.470 Sum_probs=89.7
Q ss_pred ccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCcc-
Q 003485 107 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL- 185 (816)
Q Consensus 107 VIQrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~L- 185 (816)
--+..-|||++||.++-++||. -+|++-|+|-.+++++|+..+ .++|+|||||.++++|++||+.||+..|
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLv---plfEkiG~I~elRLMmD~~sG-----~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir 151 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELV---PLFEKIGKIYELRLMMDPFSG-----DNRGYAFVTFCTKEEAQEAIKELNNYEIR 151 (506)
T ss_pred CCCCceEEecCCCccccchhhH---HHHHhccceeeEEEeecccCC-----CCcceEEEEeecHHHHHHHHHHhhCcccc
Confidence 3667889999999999999986 899999999999999996543 4688999999999999999999999987
Q ss_pred CCeEEEEeecCCCccccccCCCCCCCCCCcccccCCCCCCCccHHHHHhh
Q 003485 186 EGKSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISA 235 (816)
Q Consensus 186 dGR~LRASfGTTKYCs~FLRg~~C~NpdCmYLHE~g~~~DsfTKeem~~~ 235 (816)
-||.|+|+...++ |--|+-+.+= .-+||||...
T Consensus 152 ~GK~igvc~Svan-~RLFiG~IPK----------------~k~keeIlee 184 (506)
T KOG0117|consen 152 PGKLLGVCVSVAN-CRLFIGNIPK----------------TKKKEEILEE 184 (506)
T ss_pred CCCEeEEEEeeec-ceeEeccCCc----------------cccHHHHHHH
Confidence 6999999987776 7778888773 3577888754
No 46
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.93 E-value=1.6e-09 Score=120.45 Aligned_cols=80 Identities=21% Similarity=0.411 Sum_probs=74.9
Q ss_pred CEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEE
Q 003485 111 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 190 (816)
Q Consensus 111 NLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~L 190 (816)
..|||+|||+.+++|+|+ ++|+.+|.|..+.++.|+.++ .++|+||++|.+.|+|.+||+.|||..+.||+|
T Consensus 19 ~~v~vgnip~~~se~~l~---~~~~~~g~v~s~~~v~D~~tG-----~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l 90 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLL---SIFSGVGPVLSFRLVYDRETG-----KPKGFGFCEFTDEETAERAIRNLNGAEFNGRKL 90 (435)
T ss_pred cceEecCCCCcccHHHHH---HHHhccCccceeeecccccCC-----CcCceeeEecCchhhHHHHHHhcCCcccCCceE
Confidence 789999999999999997 999999999999999998875 568899999999999999999999999999999
Q ss_pred EEeecCCC
Q 003485 191 KACFGTTK 198 (816)
Q Consensus 191 RASfGTTK 198 (816)
||.|+...
T Consensus 91 ~v~~~~~~ 98 (435)
T KOG0108|consen 91 RVNYASNR 98 (435)
T ss_pred Eeeccccc
Confidence 99998654
No 47
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.93 E-value=2.8e-09 Score=118.56 Aligned_cols=79 Identities=23% Similarity=0.374 Sum_probs=68.7
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcc--eeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 003485 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGK--VLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (816)
Q Consensus 110 rNLVYVvGLP~~IaeEDLLKk~EyFGQYGK--I~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdG 187 (816)
..+|||.|||..+++|+|. ++|.+||. |.+|+|.....+ ++++|||+|.+.++|.+||..|||..|+|
T Consensus 394 s~~L~v~NLp~~~tee~L~---~lF~~~G~~~i~~ik~~~~~~~-------~~~~gfVeF~~~e~A~~Al~~ln~~~l~~ 463 (481)
T TIGR01649 394 SATLHLSNIPLSVSEEDLK---ELFAENGVHKVKKFKFFPKDNE-------RSKMGLLEWESVEDAVEALIALNHHQLNE 463 (481)
T ss_pred CcEEEEecCCCCCCHHHHH---HHHHhcCCccceEEEEecCCCC-------cceeEEEEcCCHHHHHHHHHHhcCCccCC
Confidence 4579999999999998875 99999998 888888643321 35789999999999999999999999999
Q ss_pred eE------EEEeecCCC
Q 003485 188 KS------LKACFGTTK 198 (816)
Q Consensus 188 R~------LRASfGTTK 198 (816)
+. ||++|++++
T Consensus 464 ~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 464 PNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCCCccceEEEEeccCC
Confidence 85 999999886
No 48
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.77 E-value=1.9e-08 Score=107.00 Aligned_cols=88 Identities=15% Similarity=0.383 Sum_probs=76.0
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 003485 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (816)
Q Consensus 110 rNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~ 189 (816)
--+|||+-|++..++..|- ++|..||+|.+|.|+++..++ .++|+|||.|.++.|-..|-+..+|..||||.
T Consensus 101 y~TLFv~RLnydT~EskLr---reF~~YG~IkrirlV~d~vTg-----kskGYAFIeye~erdm~~AYK~adG~~Idgrr 172 (335)
T KOG0113|consen 101 YKTLFVARLNYDTSESKLR---REFEKYGPIKRIRLVRDKVTG-----KSKGYAFIEYEHERDMKAAYKDADGIKIDGRR 172 (335)
T ss_pred cceeeeeeccccccHHHHH---HHHHhcCcceeEEEeeecccC-----CccceEEEEeccHHHHHHHHHhccCceecCcE
Confidence 4689999999998776664 899999999999999998764 57899999999999999999999999999999
Q ss_pred EEEeecCCCccccccC
Q 003485 190 LKACFGTTKYCHAWLR 205 (816)
Q Consensus 190 LRASfGTTKYCs~FLR 205 (816)
|-|.|-.-+--..||-
T Consensus 173 i~VDvERgRTvkgW~P 188 (335)
T KOG0113|consen 173 ILVDVERGRTVKGWLP 188 (335)
T ss_pred EEEEeccccccccccc
Confidence 9998765554455553
No 49
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.72 E-value=1.6e-08 Score=98.25 Aligned_cols=83 Identities=17% Similarity=0.344 Sum_probs=74.9
Q ss_pred ccccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCc
Q 003485 105 VRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFV 184 (816)
Q Consensus 105 VRVIQrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~ 184 (816)
.|-|....|||.|+-+..++|++- +.|+.||+|++|-++.|+.++ --+|+|.|.|++.++|+.||.++||..
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~---d~F~dyGeiKNihLNLDRRtG-----y~KGYaLvEYet~keAq~A~~~~Ng~~ 138 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIH---DKFADYGEIKNIHLNLDRRTG-----YVKGYALVEYETLKEAQAAIDALNGAE 138 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHH---HHHhhcccccceeeccccccc-----cccceeeeehHhHHHHHHHHHhccchh
Confidence 356777889999999999999995 999999999999999887654 246789999999999999999999999
Q ss_pred cCCeEEEEeec
Q 003485 185 LEGKSLKACFG 195 (816)
Q Consensus 185 LdGR~LRASfG 195 (816)
|-|+.|.|.|+
T Consensus 139 ll~q~v~VDw~ 149 (170)
T KOG0130|consen 139 LLGQNVSVDWC 149 (170)
T ss_pred hhCCceeEEEE
Confidence 99999999985
No 50
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.69 E-value=3.6e-08 Score=111.22 Aligned_cols=115 Identities=22% Similarity=0.438 Sum_probs=90.3
Q ss_pred CEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHh-----cC-Cc
Q 003485 111 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSV-----HG-FV 184 (816)
Q Consensus 111 NLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaL-----NG-~~ 184 (816)
-+|||.|||+..++|+|. +.|.+||+|.-+.|..++.++ .+.|.|||-|.++.+|..||.+. +| ..
T Consensus 293 ~tVFvRNL~fD~tEEel~---~~fskFG~v~ya~iV~~k~T~-----~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~l 364 (678)
T KOG0127|consen 293 KTVFVRNLPFDTTEEELK---EHFSKFGEVKYAIIVKDKDTG-----HSKGTAFVKFKTQIAAQNCIEAASPASEDGSVL 364 (678)
T ss_pred ceEEEecCCccccHHHHH---HHHHhhccceeEEEEeccCCC-----CcccceEEEeccHHHHHHHHHhcCccCCCceEE
Confidence 489999999999988874 999999999999998887764 46789999999999999999998 55 67
Q ss_pred cCCeEEEEeecCCCcccccc-----CCCCCCCCCCcccccCCCC------CCCccHHHHHh
Q 003485 185 LEGKSLKACFGTTKYCHAWL-----RNVPCTNPDCLYLHEVGSQ------EDSFTKDEIIS 234 (816)
Q Consensus 185 LdGR~LRASfGTTKYCs~FL-----Rg~~C~NpdCmYLHE~g~~------~DsfTKeem~~ 234 (816)
|+||.|+|..+.||--+.=| +-++-. +-=+||--.|-- .+.++.+||.-
T Consensus 365 l~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~g-krNLyLa~EG~I~~gt~aAeglS~~Dm~k 424 (678)
T KOG0127|consen 365 LDGRLLKVTLAVTRKEAADMEQKKKRKKPKG-KRNLYLAREGLIRDGTPAAEGLSATDMAK 424 (678)
T ss_pred EeccEEeeeeccchHHHHHHHHHhhhhccCC-ccceeeeccCccccCChhhcccchhhHHH
Confidence 99999999999998655533 222222 235677665532 34678888864
No 51
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.69 E-value=4.4e-08 Score=107.70 Aligned_cols=82 Identities=18% Similarity=0.352 Sum_probs=62.0
Q ss_pred cCEEEEeCCCCC--CC--------hHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHH
Q 003485 110 RNLVYIVGLPLN--LG--------DEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQS 179 (816)
Q Consensus 110 rNLVYVvGLP~~--Ia--------eEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqa 179 (816)
...|+|.||... +. .|+| .+.|++||.|++|+|.++..... .....|+|||+|.+.++|++||++
T Consensus 409 s~v~~l~N~~~~~~l~~d~~~~~~~edl---~~~f~~~G~v~~v~i~~~~~~~~--~~~~~G~~fV~F~~~e~A~~A~~~ 483 (509)
T TIGR01642 409 TKVVQLTNLVTGDDLMDDEEYEEIYEDV---KTEFSKYGPLINIVIPRPNGDRN--STPGVGKVFLEYADVRSAEKAMEG 483 (509)
T ss_pred ceEEEeccCCchhHhcCcchHHHHHHHH---HHHHHhcCCeeEEEeeccCcCCC--cCCCcceEEEEECCHHHHHHHHHH
Confidence 356788888532 11 1233 48999999999999987532210 012357899999999999999999
Q ss_pred hcCCccCCeEEEEeecC
Q 003485 180 VHGFVLEGKSLKACFGT 196 (816)
Q Consensus 180 LNG~~LdGR~LRASfGT 196 (816)
|||..|+||.|.|.|-.
T Consensus 484 lnGr~~~gr~v~~~~~~ 500 (509)
T TIGR01642 484 MNGRKFNDRVVVAAFYG 500 (509)
T ss_pred cCCCEECCeEEEEEEeC
Confidence 99999999999999844
No 52
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.65 E-value=5.4e-08 Score=109.82 Aligned_cols=80 Identities=19% Similarity=0.429 Sum_probs=72.3
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 003485 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (816)
Q Consensus 110 rNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~ 189 (816)
+..|.|.|||+.+.+++|- -+|++||+|..|+|++...+. -.|||||+|....+|..||+.+||..++||+
T Consensus 117 k~rLIIRNLPf~~k~~dLk---~vFs~~G~V~Ei~IP~k~dgk------lcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~ 187 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLK---NVFSNFGKVVEIVIPRKKDGK------LCGFAFVQFKEKKDAEKALEFFNGNKIDGRP 187 (678)
T ss_pred cceEEeecCCcccCcHHHH---HHHhhcceEEEEEcccCCCCC------ccceEEEEEeeHHHHHHHHHhccCceecCce
Confidence 5667788899999999874 899999999999999876653 2489999999999999999999999999999
Q ss_pred EEEeecCCC
Q 003485 190 LKACFGTTK 198 (816)
Q Consensus 190 LRASfGTTK 198 (816)
|-|.||..|
T Consensus 188 VAVDWAV~K 196 (678)
T KOG0127|consen 188 VAVDWAVDK 196 (678)
T ss_pred eEEeeeccc
Confidence 999999887
No 53
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.64 E-value=4e-08 Score=108.79 Aligned_cols=70 Identities=23% Similarity=0.525 Sum_probs=63.9
Q ss_pred EEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEEE
Q 003485 112 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLK 191 (816)
Q Consensus 112 LVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~LR 191 (816)
.|||.||+..+++|.|. +.|.+||+|.+|+..+| +|||-|...++|.+|++.+||..|+|..|.
T Consensus 261 vLYVRNL~~~tTeE~lk---~~F~~~G~veRVkk~rD-------------YaFVHf~eR~davkAm~~~ngkeldG~~iE 324 (506)
T KOG0117|consen 261 VLYVRNLMESTTEETLK---KLFNEFGKVERVKKPRD-------------YAFVHFAEREDAVKAMKETNGKELDGSPIE 324 (506)
T ss_pred eeeeeccchhhhHHHHH---HHHHhccceEEeecccc-------------eeEEeecchHHHHHHHHHhcCceecCceEE
Confidence 48999999999876653 89999999999998754 689999999999999999999999999999
Q ss_pred EeecCC
Q 003485 192 ACFGTT 197 (816)
Q Consensus 192 ASfGTT 197 (816)
|.+|..
T Consensus 325 vtLAKP 330 (506)
T KOG0117|consen 325 VTLAKP 330 (506)
T ss_pred EEecCC
Confidence 999975
No 54
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.64 E-value=2.2e-08 Score=110.54 Aligned_cols=84 Identities=21% Similarity=0.453 Sum_probs=75.6
Q ss_pred cccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCc-
Q 003485 106 RVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFV- 184 (816)
Q Consensus 106 RVIQrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~- 184 (816)
|++-...+||+-|+.+.+|+|+. |+|.+||.|.++.|.|+..+ ..+|.|||+|..+|-|..||++|||..
T Consensus 120 r~~~e~KLFvg~lsK~~te~evr---~iFs~fG~Ied~~ilrd~~~------~sRGcaFV~fstke~A~~Aika~ng~~t 190 (510)
T KOG0144|consen 120 RIVEERKLFVGMLSKQCTENEVR---EIFSRFGHIEDCYILRDPDG------LSRGCAFVKFSTKEMAVAAIKALNGTQT 190 (510)
T ss_pred ccccchhhhhhhccccccHHHHH---HHHHhhCccchhhheecccc------cccceeEEEEehHHHHHHHHHhhcccee
Confidence 56778889999999999999995 99999999999999998765 357889999999999999999999976
Q ss_pred cCC--eEEEEeecCCC
Q 003485 185 LEG--KSLKACFGTTK 198 (816)
Q Consensus 185 LdG--R~LRASfGTTK 198 (816)
+.| .+|-|-||-||
T Consensus 191 meGcs~PLVVkFADtq 206 (510)
T KOG0144|consen 191 MEGCSQPLVVKFADTQ 206 (510)
T ss_pred eccCCCceEEEecccC
Confidence 666 58999999998
No 55
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.60 E-value=4.6e-08 Score=110.24 Aligned_cols=78 Identities=23% Similarity=0.478 Sum_probs=70.8
Q ss_pred EEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEEEE
Q 003485 113 VYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKA 192 (816)
Q Consensus 113 VYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~LRA 192 (816)
|||++|-++++++.++ ..|..||+|..|.+.++..++ ..+||+||||.+.++|.+|...|||+.|-||.|||
T Consensus 281 l~vgnLHfNite~~lr---~ifepfg~Ie~v~l~~d~~tG-----~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV 352 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLR---GIFEPFGKIENVQLTKDSETG-----RSKGFGFITFVNKEDARKALEQLNGFELAGRLIKV 352 (549)
T ss_pred hhhcccccCchHHHHh---hhccCcccceeeeeccccccc-----cccCcceEEEecHHHHHHHHHHhccceecCceEEE
Confidence 9999999999887775 899999999999999986553 35678999999999999999999999999999999
Q ss_pred eecCCC
Q 003485 193 CFGTTK 198 (816)
Q Consensus 193 SfGTTK 198 (816)
+..|-+
T Consensus 353 ~~v~~r 358 (549)
T KOG0147|consen 353 SVVTER 358 (549)
T ss_pred EEeeee
Confidence 998876
No 56
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.60 E-value=9.1e-08 Score=100.74 Aligned_cols=88 Identities=17% Similarity=0.400 Sum_probs=76.1
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 003485 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (816)
Q Consensus 109 QrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR 188 (816)
-|..+.|--||.+.++||+. .+|+..|+|..+++.||+.++ .+-|++||.|.+++||++||..|||-.|..+
T Consensus 40 skTNLIvNYLPQ~MTqdE~r---SLF~SiGeiEScKLvRDKitG-----qSLGYGFVNYv~p~DAe~AintlNGLrLQ~K 111 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELR---SLFGSIGEIESCKLVRDKITG-----QSLGYGFVNYVRPKDAEKAINTLNGLRLQNK 111 (360)
T ss_pred ccceeeeeecccccCHHHHH---HHhhcccceeeeeeeeccccc-----cccccceeeecChHHHHHHHhhhcceeeccc
Confidence 35567788999999999985 899999999999999999775 2456789999999999999999999999999
Q ss_pred EEEEeecCCCccccccCC
Q 003485 189 SLKACFGTTKYCHAWLRN 206 (816)
Q Consensus 189 ~LRASfGTTKYCs~FLRg 206 (816)
+|||+||..- +.-+|+
T Consensus 112 TIKVSyARPS--s~~Ik~ 127 (360)
T KOG0145|consen 112 TIKVSYARPS--SDSIKD 127 (360)
T ss_pred eEEEEeccCC--hhhhcc
Confidence 9999999876 334443
No 57
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.60 E-value=8.2e-08 Score=111.48 Aligned_cols=89 Identities=18% Similarity=0.443 Sum_probs=78.6
Q ss_pred cchhccCcccc----ccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHH
Q 003485 96 EGKKQQLSSVR----VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEE 171 (816)
Q Consensus 96 e~RK~~LanVR----VIQrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~E 171 (816)
+-|++-|..|| .|...+|||+||+.++.+.||- .+|+.||.|..|.++- +++.|||++.+..
T Consensus 403 eRr~kglP~I~pd~isV~SrTLwvG~i~k~v~e~dL~---~~feefGeiqSi~li~-----------~R~cAfI~M~~Rq 468 (894)
T KOG0132|consen 403 ERRKKGLPTIPPDHISVCSRTLWVGGIPKNVTEQDLA---NLFEEFGEIQSIILIP-----------PRGCAFIKMVRRQ 468 (894)
T ss_pred ccccccCCCCCCcceeEeeeeeeeccccchhhHHHHH---HHHHhcccceeEeecc-----------CCceeEEEEeehh
Confidence 34555788887 5677889999999999999985 8999999999999874 3567999999999
Q ss_pred HHHHHHHHhcCCccCCeEEEEeecCCC
Q 003485 172 EAVRCIQSVHGFVLEGKSLKACFGTTK 198 (816)
Q Consensus 172 DA~rAIqaLNG~~LdGR~LRASfGTTK 198 (816)
||.+|+++|....+.++.||+.||.-|
T Consensus 469 dA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 469 DAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred HHHHHHHHHhcccccceeeEEeeeccC
Confidence 999999999999999999999999776
No 58
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.53 E-value=7.4e-08 Score=101.69 Aligned_cols=81 Identities=23% Similarity=0.453 Sum_probs=73.9
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 003485 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (816)
Q Consensus 110 rNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~ 189 (816)
...+||.-||.++.+.||+ ++|-.||.|+..+|-.|+.+. .+++|+||.|+++..|..||++|||++++=++
T Consensus 285 GCNlFIYHLPQEFgDaEli---QmF~PFGhivSaKVFvDRATN-----QSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKR 356 (371)
T KOG0146|consen 285 GCNLFIYHLPQEFGDAELI---QMFLPFGHIVSAKVFVDRATN-----QSKCFGFVSFDNPASAQAAIQAMNGFQIGMKR 356 (371)
T ss_pred cceEEEEeCchhhccHHHH---HHhccccceeeeeeeehhccc-----cccceeeEecCCchhHHHHHHHhcchhhhhhh
Confidence 4568999999999999998 899999999998888887763 36889999999999999999999999999999
Q ss_pred EEEeecCCC
Q 003485 190 LKACFGTTK 198 (816)
Q Consensus 190 LRASfGTTK 198 (816)
|||.+-+.|
T Consensus 357 LKVQLKRPk 365 (371)
T KOG0146|consen 357 LKVQLKRPK 365 (371)
T ss_pred hhhhhcCcc
Confidence 999988777
No 59
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=98.53 E-value=4.4e-08 Score=105.42 Aligned_cols=54 Identities=44% Similarity=1.262 Sum_probs=49.3
Q ss_pred CCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcccchh
Q 003485 7 KTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIV 66 (816)
Q Consensus 7 ~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Ydee~i~ 66 (816)
..||+|.|++|.+|.+|.||+||+++|+||+.-|.+ .+|+||+||++|......
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~------~~~~~~~~rk~~~~~t~~ 303 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISD------GDGRCPGCRKPYERNTKK 303 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccc------cCCCCCccCCccccCccc
Confidence 689999999999999999999999999999999964 689999999999766553
No 60
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.47 E-value=1.2e-07 Score=103.15 Aligned_cols=75 Identities=21% Similarity=0.428 Sum_probs=67.1
Q ss_pred CEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEE
Q 003485 111 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 190 (816)
Q Consensus 111 NLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~L 190 (816)
..|||+.|.+++.+ |.+| ..|..||.|+.|.|+.|..+. ..++||||+|+-+|.|+.|++.|||..++||.|
T Consensus 114 cRvYVGSIsfEl~E-DtiR--~AF~PFGPIKSInMSWDp~T~-----kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNi 185 (544)
T KOG0124|consen 114 CRVYVGSISFELRE-DTIR--RAFDPFGPIKSINMSWDPATG-----KHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNI 185 (544)
T ss_pred HheeeeeeEEEech-HHHH--hhccCCCCcceeecccccccc-----cccceEEEEEeCcHHHHHHHHHhccccccCccc
Confidence 56899999999976 4553 799999999999999988763 457899999999999999999999999999999
Q ss_pred EEe
Q 003485 191 KAC 193 (816)
Q Consensus 191 RAS 193 (816)
||.
T Consensus 186 KVg 188 (544)
T KOG0124|consen 186 KVG 188 (544)
T ss_pred ccc
Confidence 986
No 61
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.42 E-value=4.9e-07 Score=92.54 Aligned_cols=80 Identities=21% Similarity=0.422 Sum_probs=71.0
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCC-cceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 003485 110 RNLVYIVGLPLNLGDEDLLQRREYFGQY-GKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (816)
Q Consensus 110 rNLVYVvGLP~~IaeEDLLKk~EyFGQY-GKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR 188 (816)
...|||.-+|.-+-+-++| .||+|| |.|..+++.|++.++ +++|+|||.|+++|.|.-|-+.||++.|.|+
T Consensus 49 ~g~~~~~~~p~g~~e~~~~---~~~~q~~g~v~r~rlsRnkrTG-----NSKgYAFVEFEs~eVA~IaAETMNNYLl~e~ 120 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEIL---NYFRQFGGTVTRFRLSRNKRTG-----NSKGYAFVEFESEEVAKIAAETMNNYLLMEH 120 (214)
T ss_pred ccceeecccccchhHHHHh---hhhhhcCCeeEEEEeecccccC-----CcCceEEEEeccHHHHHHHHHHhhhhhhhhh
Confidence 5789999999999888888 899999 888888888888765 5789999999999999999999999999999
Q ss_pred EEEEeecCC
Q 003485 189 SLKACFGTT 197 (816)
Q Consensus 189 ~LRASfGTT 197 (816)
.|.|.|=-.
T Consensus 121 lL~c~vmpp 129 (214)
T KOG4208|consen 121 LLECHVMPP 129 (214)
T ss_pred eeeeEEeCc
Confidence 999887433
No 62
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.38 E-value=8e-07 Score=93.01 Aligned_cols=78 Identities=23% Similarity=0.494 Sum_probs=70.6
Q ss_pred CEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEE
Q 003485 111 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 190 (816)
Q Consensus 111 NLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~L 190 (816)
..|||.|||+.|.++||. |+|.+||.+.++.|..++.+ .+.|.|=|+|.+.+||++||+.++|..+||+.|
T Consensus 84 ~~v~v~NL~~~V~~~Dl~---eLF~~~~~~~r~~vhy~~~G------~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~m 154 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLK---ELFAEFGELKRVAVHYDRAG------RSLGTADVSFNRRDDAERAVKKYNGVALDGRPM 154 (243)
T ss_pred ceeeeecCCcCcchHHHH---HHHHHhccceEEeeccCCCC------CCCccceeeecchHhHHHHHHHhcCcccCCcee
Confidence 779999999999999997 99999999999999988766 245789999999999999999999999999999
Q ss_pred EEeecCC
Q 003485 191 KACFGTT 197 (816)
Q Consensus 191 RASfGTT 197 (816)
++....+
T Consensus 155 k~~~i~~ 161 (243)
T KOG0533|consen 155 KIEIISS 161 (243)
T ss_pred eeEEecC
Confidence 9876544
No 63
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.34 E-value=7.4e-07 Score=98.77 Aligned_cols=78 Identities=19% Similarity=0.454 Sum_probs=67.7
Q ss_pred EEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCc-cCC--eE
Q 003485 113 VYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFV-LEG--KS 189 (816)
Q Consensus 113 VYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~-LdG--R~ 189 (816)
+||+-||...+|+||+ ++|.+||.|..|.|.||+.+. .++|..||+|.+.+||.+||.+|++.. |-| .+
T Consensus 37 lfVgqIprt~sE~dlr---~lFe~yg~V~einl~kDk~t~-----~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 37 LFVGQIPRTASEKDLR---ELFEKYGNVYEINLIKDKSTG-----QSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred heeccCCccccHHHHH---HHHHHhCceeEEEeecccccC-----cccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 7999999999999996 999999999999999999764 356778999999999999999999864 655 47
Q ss_pred EEEeecCCC
Q 003485 190 LKACFGTTK 198 (816)
Q Consensus 190 LRASfGTTK 198 (816)
|+|-||-+.
T Consensus 109 vqvk~Ad~E 117 (510)
T KOG0144|consen 109 VQVKYADGE 117 (510)
T ss_pred eeecccchh
Confidence 777777554
No 64
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.34 E-value=5.9e-07 Score=90.82 Aligned_cols=88 Identities=20% Similarity=0.314 Sum_probs=73.0
Q ss_pred cCccccccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEE-EEeecCCccccccCCCceEEEEEeCCHHHHHHHHHH
Q 003485 101 QLSSVRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKV-SMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQS 179 (816)
Q Consensus 101 ~LanVRVIQrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KI-vInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqa 179 (816)
+-.+++|- -.+||+||.+.+ +|.+| ++.|+.||.|++. .|.++..++ ++++++||.|++.|.|.+||.+
T Consensus 89 ~~~nl~vg--anlfvgNLd~~v-De~~L--~dtFsafG~l~~~P~i~rd~~tg-----~~~~~g~i~~~sfeasd~ai~s 158 (203)
T KOG0131|consen 89 HQKNLDVG--ANLFVGNLDPEV-DEKLL--YDTFSAFGVLISPPKIMRDPDTG-----NPKGFGFINYASFEASDAAIGS 158 (203)
T ss_pred cccccccc--ccccccccCcch-hHHHH--HHHHHhccccccCCcccccccCC-----CCCCCeEEechhHHHHHHHHHH
Confidence 44566664 668999999987 55666 7999999999874 456665543 5678999999999999999999
Q ss_pred hcCCccCCeEEEEeecCCC
Q 003485 180 VHGFVLEGKSLKACFGTTK 198 (816)
Q Consensus 180 LNG~~LdGR~LRASfGTTK 198 (816)
|||+.+..|+|+|+|+--|
T Consensus 159 ~ngq~l~nr~itv~ya~k~ 177 (203)
T KOG0131|consen 159 MNGQYLCNRPITVSYAFKK 177 (203)
T ss_pred hccchhcCCceEEEEEEec
Confidence 9999999999999998655
No 65
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=1.2e-06 Score=96.09 Aligned_cols=75 Identities=23% Similarity=0.516 Sum_probs=67.7
Q ss_pred EEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEEEE
Q 003485 113 VYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKA 192 (816)
Q Consensus 113 VYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~LRA 192 (816)
|||-+|++.++.++|. ++|+.||+|+.+.|.++..+ .+|+ ||.|+++++|.+||..+||..+.|+.|-|
T Consensus 79 ~~i~nl~~~~~~~~~~---d~f~~~g~ilS~kv~~~~~g-------~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~v 147 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLY---DTFSEFGNILSCKVATDENG-------SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYV 147 (369)
T ss_pred eeecCCCcccCcHHHH---HHHHhhcCeeEEEEEEcCCC-------ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEE
Confidence 9999999999999985 99999999999999998765 3677 99999999999999999999999999988
Q ss_pred eecCCC
Q 003485 193 CFGTTK 198 (816)
Q Consensus 193 SfGTTK 198 (816)
.....|
T Consensus 148 g~~~~~ 153 (369)
T KOG0123|consen 148 GLFERK 153 (369)
T ss_pred eeccch
Confidence 755443
No 66
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.32 E-value=8.2e-07 Score=100.72 Aligned_cols=77 Identities=27% Similarity=0.512 Sum_probs=66.0
Q ss_pred CEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEE
Q 003485 111 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 190 (816)
Q Consensus 111 NLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~L 190 (816)
-.++|.||.....--||. .+|++||||+-..|+.+..+ |..++++||||.+.+||.+||..|+-..|+||.|
T Consensus 406 RNlWVSGLSstTRAtDLK---nlFSKyGKVvGAKVVTNaRs-----PGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmI 477 (940)
T KOG4661|consen 406 RNLWVSGLSSTTRATDLK---NLFSKYGKVVGAKVVTNARS-----PGARCYGFVTMSTSAEATKCIEHLHRTELHGRMI 477 (940)
T ss_pred cceeeeccccchhhhHHH---HHHHHhcceeceeeeecCCC-----CCcceeEEEEecchHHHHHHHHHhhhhhhcceee
Confidence 348999999988777774 89999999998877765533 3457899999999999999999999999999999
Q ss_pred EEeec
Q 003485 191 KACFG 195 (816)
Q Consensus 191 RASfG 195 (816)
-|.-+
T Consensus 478 SVEka 482 (940)
T KOG4661|consen 478 SVEKA 482 (940)
T ss_pred eeeec
Confidence 99854
No 67
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.28 E-value=1.3e-06 Score=101.17 Aligned_cols=112 Identities=15% Similarity=0.262 Sum_probs=88.3
Q ss_pred ccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC
Q 003485 107 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (816)
Q Consensus 107 VIQrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~Ld 186 (816)
--|...|||+||++.+.++.|| ..||.||.|..|.|+..+.-- ...+.+-.+||-|....||++|++.|+|..+.
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll---~tfGrfgPlasvKimwpRtEe--Ek~r~r~cgfvafmnR~D~era~k~lqg~iv~ 245 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLL---RTFGRFGPLASVKIMWPRTEE--EKRRERNCGFVAFMNRADAERALKELQGIIVM 245 (877)
T ss_pred CCcccceeeecCCccccHHHHH---HHhcccCcccceeeecccchh--hhccccccceeeehhhhhHHHHHHHhcceeee
Confidence 3567789999999999999998 799999999999997433211 01134556899999999999999999999999
Q ss_pred CeEEEEeec-------CCCccccccCCCCCCCCCCcccccCCCC
Q 003485 187 GKSLKACFG-------TTKYCHAWLRNVPCTNPDCLYLHEVGSQ 223 (816)
Q Consensus 187 GR~LRASfG-------TTKYCs~FLRg~~C~NpdCmYLHE~g~~ 223 (816)
++.||.-|| +++|-.--+-+..=+.+.|..-|+-...
T Consensus 246 ~~e~K~gWgk~V~ip~~p~~ipp~~h~~~lp~p~s~Lpfnaqp~ 289 (877)
T KOG0151|consen 246 EYEMKLGWGKAVPIPNIPIYIPPPLHEATLPPPPSNLPFNAQPG 289 (877)
T ss_pred eeeeeeccccccccCCccccCCChhhhccCCCCccCCcccCCCC
Confidence 999999999 5666666666666666777776665433
No 68
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.28 E-value=7.4e-07 Score=95.09 Aligned_cols=71 Identities=25% Similarity=0.505 Sum_probs=65.2
Q ss_pred EEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEEE
Q 003485 112 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLK 191 (816)
Q Consensus 112 LVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~LR 191 (816)
.+||+|||.+..+.+|. .+|.|||||+...|+++ .+||-.+++..|..||+.|+|..|+|..|+
T Consensus 4 KLFIGNLp~~~~~~elr---~lFe~ygkVlECDIvKN-------------YgFVHiEdktaaedairNLhgYtLhg~nIn 67 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELR---SLFEQYGKVLECDIVKN-------------YGFVHIEDKTAAEDAIRNLHGYTLHGVNIN 67 (346)
T ss_pred chhccCCCcccchHHHH---HHHHhhCceEeeeeecc-------------cceEEeecccccHHHHhhcccceecceEEE
Confidence 58999999999888874 89999999999999874 469999999999999999999999999999
Q ss_pred EeecCCC
Q 003485 192 ACFGTTK 198 (816)
Q Consensus 192 ASfGTTK 198 (816)
|.=.+.|
T Consensus 68 VeaSksK 74 (346)
T KOG0109|consen 68 VEASKSK 74 (346)
T ss_pred EEecccc
Confidence 9988877
No 69
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.23 E-value=1.9e-06 Score=93.64 Aligned_cols=74 Identities=24% Similarity=0.461 Sum_probs=63.5
Q ss_pred CEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHH-hcCCccCCeE
Q 003485 111 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQS-VHGFVLEGKS 189 (816)
Q Consensus 111 NLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqa-LNG~~LdGR~ 189 (816)
.+|||+||-..+++.+|. +.|-|||.|..|+|... .+.|||+|.+.+.|+.|... .|-..++|+.
T Consensus 229 ~tLyIg~l~d~v~e~dIr---dhFyqyGeirsi~~~~~-----------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~R 294 (377)
T KOG0153|consen 229 KTLYIGGLNDEVLEQDIR---DHFYQYGEIRSIRILPR-----------KGCAFVTFTTREAAEKAAEKSFNKLVINGFR 294 (377)
T ss_pred eEEEecccccchhHHHHH---HHHhhcCCeeeEEeecc-----------cccceeeehhhHHHHHHHHhhcceeeecceE
Confidence 479999999999998885 99999999999999743 24699999999999998855 4545689999
Q ss_pred EEEeecCCC
Q 003485 190 LKACFGTTK 198 (816)
Q Consensus 190 LRASfGTTK 198 (816)
|++-||.++
T Consensus 295 l~i~Wg~~~ 303 (377)
T KOG0153|consen 295 LKIKWGRPK 303 (377)
T ss_pred EEEEeCCCc
Confidence 999999994
No 70
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=3.2e-06 Score=92.17 Aligned_cols=89 Identities=17% Similarity=0.349 Sum_probs=76.9
Q ss_pred cCccccc-cccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHH
Q 003485 101 QLSSVRV-IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQS 179 (816)
Q Consensus 101 ~LanVRV-IQrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqa 179 (816)
.|...-| ...|.|||.-|.|-.++|||- -+|+.||+|....|.++..++ ..-.+|||.|+++++.+.|.-.
T Consensus 229 DlpdAd~~PPeNVLFVCKLNPVTtDeDLe---iIFSrFG~i~sceVIRD~ktg-----dsLqyaFiEFen~escE~AyFK 300 (479)
T KOG0415|consen 229 DLPDADVKPPENVLFVCKLNPVTTDEDLE---IIFSRFGKIVSCEVIRDRKTG-----DSLQYAFIEFENKESCEQAYFK 300 (479)
T ss_pred CCcccccCCCcceEEEEecCCcccccchh---hHHhhcccceeeeEEeccccc-----chhheeeeeecchhhHHHHHhh
Confidence 4444443 457999999999999999985 699999999999999998775 2345799999999999999999
Q ss_pred hcCCccCCeEEEEeecCC
Q 003485 180 VHGFVLEGKSLKACFGTT 197 (816)
Q Consensus 180 LNG~~LdGR~LRASfGTT 197 (816)
||+..+|.|.|.|.|...
T Consensus 301 MdNvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 301 MDNVLIDDRRIHVDFSQS 318 (479)
T ss_pred hcceeeccceEEeehhhh
Confidence 999999999999999754
No 71
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.22 E-value=1.2e-06 Score=93.52 Aligned_cols=77 Identities=17% Similarity=0.399 Sum_probs=69.8
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 003485 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (816)
Q Consensus 110 rNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~ 189 (816)
...++|+||.+..+..||. +.|.+||.|+...|.++ .+||-|...|||..||+.|||.+++|+.
T Consensus 78 stkl~vgNis~tctn~ElR---a~fe~ygpviecdivkd-------------y~fvh~d~~eda~~air~l~~~~~~gk~ 141 (346)
T KOG0109|consen 78 STKLHVGNISPTCTNQELR---AKFEKYGPVIECDIVKD-------------YAFVHFDRAEDAVEAIRGLDNTEFQGKR 141 (346)
T ss_pred ccccccCCCCccccCHHHh---hhhcccCCceeeeeecc-------------eeEEEEeeccchHHHHhcccccccccce
Confidence 5679999999999999984 99999999999999864 5899999999999999999999999999
Q ss_pred EEEeecCCCcccc
Q 003485 190 LKACFGTTKYCHA 202 (816)
Q Consensus 190 LRASfGTTKYCs~ 202 (816)
|+|...|.+--..
T Consensus 142 m~vq~stsrlrta 154 (346)
T KOG0109|consen 142 MHVQLSTSRLRTA 154 (346)
T ss_pred eeeeeeccccccC
Confidence 9999999885443
No 72
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=1.4e-06 Score=95.59 Aligned_cols=84 Identities=23% Similarity=0.406 Sum_probs=74.6
Q ss_pred cccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCcc
Q 003485 106 RVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (816)
Q Consensus 106 RVIQrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~L 185 (816)
+..+.-.|||-||+..+.++.|. ++|+.||.|..+.|..+..+ ..+|++||.|+..++|.+|+..+||..+
T Consensus 266 ~~~~~~nl~vknld~~~~~e~L~---~~f~~~GeI~s~kv~~~~~g------~skG~gfV~fs~~eeA~~A~~~~n~~~i 336 (369)
T KOG0123|consen 266 VSLQGANLYVKNLDETLSDEKLR---KIFSSFGEITSAKVMVDENG------KSKGFGFVEFSSPEEAKKAMTEMNGRLI 336 (369)
T ss_pred ccccccccccccCccccchhHHH---HHHhcccceeeEEEEeccCC------CccceEEEEcCCHHHHHHHHHhhChhhh
Confidence 45666779999999999998875 89999999999999987655 3578899999999999999999999999
Q ss_pred CCeEEEEeecCCC
Q 003485 186 EGKSLKACFGTTK 198 (816)
Q Consensus 186 dGR~LRASfGTTK 198 (816)
.|+.|.+..+..+
T Consensus 337 ~~k~l~vav~qr~ 349 (369)
T KOG0123|consen 337 GGKPLYVAVAQRK 349 (369)
T ss_pred cCCchhhhHHhhh
Confidence 9999999988744
No 73
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.19 E-value=4e-06 Score=97.16 Aligned_cols=124 Identities=18% Similarity=0.192 Sum_probs=86.7
Q ss_pred ccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC
Q 003485 107 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (816)
Q Consensus 107 VIQrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~Ld 186 (816)
.++.+.+||.||++..+.+++. ..|..+|.|+.|.|.+.+.... ..-+.|+|||.|.++|+|.+|+++|+|..|+
T Consensus 512 ~~~~t~lfvkNlnf~Tt~e~l~---~~F~k~G~VlS~~I~kkkd~~~--k~lSmGfgFVEF~~~e~A~~a~k~lqgtvld 586 (725)
T KOG0110|consen 512 EETETKLFVKNLNFDTTLEDLE---DLFSKQGTVLSIEISKKKDPAN--KYLSMGFGFVEFAKPESAQAALKALQGTVLD 586 (725)
T ss_pred cccchhhhhhcCCcccchhHHH---HHHHhcCeEEEEEEeccccccc--cccccceeEEEecCHHHHHHHHHHhcCceec
Confidence 3445559999999999999987 8999999999999976543211 1124689999999999999999999999999
Q ss_pred CeEEEEeecCCCccccccCCCCCCC-CCCcccccCCCCCCCccHHHHHhhhcc
Q 003485 187 GKSLKACFGTTKYCHAWLRNVPCTN-PDCLYLHEVGSQEDSFTKDEIISAYTR 238 (816)
Q Consensus 187 GR~LRASfGTTKYCs~FLRg~~C~N-pdCmYLHE~g~~~DsfTKeem~~~~~~ 238 (816)
|+.|.+.|.-.|--..-- .+|.. +-|.-||=-.-+ =..|+.|+....+.
T Consensus 587 GH~l~lk~S~~k~~~~~g--K~~~~kk~~tKIlVRNip-FeAt~rEVr~LF~a 636 (725)
T KOG0110|consen 587 GHKLELKISENKPASTVG--KKKSKKKKGTKILVRNIP-FEATKREVRKLFTA 636 (725)
T ss_pred CceEEEEeccCccccccc--cccccccccceeeeeccc-hHHHHHHHHHHHhc
Confidence 999999987744222211 33333 235544422111 11366676665443
No 74
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.07 E-value=1.4e-05 Score=87.05 Aligned_cols=87 Identities=23% Similarity=0.319 Sum_probs=74.3
Q ss_pred ccccccccCEEEEeCCCCCCChHHHHHHHhhhcCCccee--------EEEEeecCCccccccCCCceEEEEEeCCHHHHH
Q 003485 103 SSVRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVL--------KVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAV 174 (816)
Q Consensus 103 anVRVIQrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~--------KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~ 174 (816)
.++--.+...|||.|||..|+.++++ ++|+++|-|. +|.+.++..|. .+|-|-|+|-+.|...
T Consensus 127 ~~~~~~~Nt~VYVsgLP~DiT~dE~~---~~~sKcGiI~~d~~t~epk~KlYrd~~G~------lKGDaLc~y~K~ESVe 197 (382)
T KOG1548|consen 127 FNPEPKVNTSVYVSGLPLDITVDEFA---EVMSKCGIIMRDPQTGEPKVKLYRDNQGK------LKGDALCCYIKRESVE 197 (382)
T ss_pred cCcccccCceEEecCCCCcccHHHHH---HHHHhcceEeccCCCCCeeEEEEecCCCC------ccCceEEEeecccHHH
Confidence 34445566679999999999999998 9999999997 67788876652 4678999999999999
Q ss_pred HHHHHhcCCccCCeEEEEeecCCC
Q 003485 175 RCIQSVHGFVLEGKSLKACFGTTK 198 (816)
Q Consensus 175 rAIqaLNG~~LdGR~LRASfGTTK 198 (816)
.||+.|||..|.|+.|||.-|.-.
T Consensus 198 LA~~ilDe~~~rg~~~rVerAkfq 221 (382)
T KOG1548|consen 198 LAIKILDEDELRGKKLRVERAKFQ 221 (382)
T ss_pred HHHHHhCcccccCcEEEEehhhhh
Confidence 999999999999999999966443
No 75
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=97.96 E-value=1.2e-05 Score=88.06 Aligned_cols=79 Identities=22% Similarity=0.407 Sum_probs=70.4
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 003485 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (816)
Q Consensus 110 rNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~ 189 (816)
-|.|||..+-+++.++||. ..|.-||+|++..+.+...+. ..+|++||+|.+...-..||..||=|.|+|+.
T Consensus 210 fnRiYVaSvHpDLSe~DiK---SVFEAFG~I~~C~LAr~pt~~-----~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQy 281 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIK---SVFEAFGEIVKCQLARAPTGR-----GHKGYGFIEYNNLQSQSEAIASMNLFDLGGQY 281 (544)
T ss_pred hheEEeeecCCCccHHHHH---HHHHhhcceeeEEeeccCCCC-----CccceeeEEeccccchHHHhhhcchhhcccce
Confidence 5899999999999999985 899999999999999876542 45788999999999999999999999999999
Q ss_pred EEEeecC
Q 003485 190 LKACFGT 196 (816)
Q Consensus 190 LRASfGT 196 (816)
|||--..
T Consensus 282 LRVGk~v 288 (544)
T KOG0124|consen 282 LRVGKCV 288 (544)
T ss_pred Eeccccc
Confidence 9986433
No 76
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.89 E-value=7.4e-06 Score=93.06 Aligned_cols=88 Identities=19% Similarity=0.403 Sum_probs=74.5
Q ss_pred chhccCccccccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHH
Q 003485 97 GKKQQLSSVRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRC 176 (816)
Q Consensus 97 ~RK~~LanVRVIQrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rA 176 (816)
.|+ ++....+.-...|+|.+||..|.+++|+ ++||.||+|..|..-+ ...+-+||.|-+..+|++|
T Consensus 63 ~~~-~np~~~~~~~~~L~v~nl~~~Vsn~~L~---~~f~~yGeir~ir~t~----------~~~~~~~v~FyDvR~A~~A 128 (549)
T KOG4660|consen 63 LRP-DNPSEKDMNQGTLVVFNLPRSVSNDTLL---RIFGAYGEIREIRETP----------NKRGIVFVEFYDVRDAERA 128 (549)
T ss_pred CCc-CCCCcccCccceEEEEecCCcCCHHHHH---HHHHhhcchhhhhccc----------ccCceEEEEEeehHhHHHH
Confidence 455 6666667777789999999999999998 8999999999966533 3456789999999999999
Q ss_pred HHHhcCCccCCeEEEEeecCCC
Q 003485 177 IQSVHGFVLEGKSLKACFGTTK 198 (816)
Q Consensus 177 IqaLNG~~LdGR~LRASfGTTK 198 (816)
+++|++..+.|+.|+...|+++
T Consensus 129 lk~l~~~~~~~~~~k~~~~~~~ 150 (549)
T KOG4660|consen 129 LKALNRREIAGKRIKRPGGARR 150 (549)
T ss_pred HHHHHHHHhhhhhhcCCCcccc
Confidence 9999999999999997766655
No 77
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.85 E-value=1.1e-05 Score=87.19 Aligned_cols=75 Identities=23% Similarity=0.405 Sum_probs=59.7
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 003485 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (816)
Q Consensus 110 rNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~ 189 (816)
...+||+||+|.+++|.|- +||++||+|.+.+|+++..+. ++++++||+|++++.-.+++.. .-..||||.
T Consensus 6 ~~KlfiGgisw~ttee~Lr---~yf~~~Gev~d~~vm~d~~t~-----rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ 76 (311)
T KOG4205|consen 6 SGKLFIGGLSWETTEESLR---EYFSQFGEVTDCVVMRDPSTG-----RSRGFGFVTFATPEGVDAVLNA-RTHKLDGRS 76 (311)
T ss_pred CcceeecCcCccccHHHHH---HHhcccCceeeEEEeccCCCC-----CcccccceecCCCcchheeecc-cccccCCcc
Confidence 4568999999999888764 999999999999999998653 5788999999998877666653 224567777
Q ss_pred EEEe
Q 003485 190 LKAC 193 (816)
Q Consensus 190 LRAS 193 (816)
|-+-
T Consensus 77 ve~k 80 (311)
T KOG4205|consen 77 VEPK 80 (311)
T ss_pred ccce
Confidence 6544
No 78
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.79 E-value=4.3e-05 Score=83.37 Aligned_cols=61 Identities=31% Similarity=0.522 Sum_probs=52.4
Q ss_pred hhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEEEEee--cCCCccc
Q 003485 132 EYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKACF--GTTKYCH 201 (816)
Q Consensus 132 EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~LRASf--GTTKYCs 201 (816)
+--.+||.|.+|+|.-.+ +.|.|-|+|.+.++|..||+.|+|.+++||.|.|+. |+|+|-.
T Consensus 295 eec~K~G~v~~vvv~d~h---------PdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~~~~ 357 (382)
T KOG1548|consen 295 EECEKFGQVRKVVVYDRH---------PDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTKFQT 357 (382)
T ss_pred HHHHHhCCcceEEEeccC---------CCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcceeee
Confidence 667899999999997432 457789999999999999999999999999999885 6788754
No 79
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.77 E-value=2.7e-05 Score=84.25 Aligned_cols=84 Identities=20% Similarity=0.313 Sum_probs=68.6
Q ss_pred CEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEE
Q 003485 111 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 190 (816)
Q Consensus 111 NLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~L 190 (816)
..|||+|||+.+.++++. +||.|||+|..++++.|+... .+++|+||+|..++...++ ....-..|.|+.+
T Consensus 98 kkiFvGG~~~~~~e~~~r---~yfe~~g~v~~~~~~~d~~~~-----~~rgFgfv~~~~e~sVdkv-~~~~f~~~~gk~v 168 (311)
T KOG4205|consen 98 KKIFVGGLPPDTTEEDFK---DYFEQFGKVADVVIMYDKTTS-----RPRGFGFVTFDSEDSVDKV-TLQKFHDFNGKKV 168 (311)
T ss_pred eEEEecCcCCCCchHHHh---hhhhccceeEeeEEeeccccc-----ccccceeeEecccccccee-cccceeeecCcee
Confidence 469999999999888874 999999999999999988663 4678999999997655554 4466778999999
Q ss_pred EEeecCCCccccc
Q 003485 191 KACFGTTKYCHAW 203 (816)
Q Consensus 191 RASfGTTKYCs~F 203 (816)
.|--|+.|--...
T Consensus 169 evkrA~pk~~~~~ 181 (311)
T KOG4205|consen 169 EVKRAIPKEVMQS 181 (311)
T ss_pred eEeeccchhhccc
Confidence 9998888854443
No 80
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.75 E-value=2.7e-05 Score=85.01 Aligned_cols=98 Identities=14% Similarity=0.205 Sum_probs=86.0
Q ss_pred cccccCEEEEeCCCCCCChHHHHHHHhhhcCCccee--------EEEEeecCCccccccCCCceEEEEEeCCHHHHHHHH
Q 003485 106 RVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVL--------KVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCI 177 (816)
Q Consensus 106 RVIQrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~--------KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAI 177 (816)
.+.+..+|||-+||..++..++. ++|.|.|.|. +|.|.+++++. .+++-|-|+|.+.-.|+.||
T Consensus 62 ~~s~~~ti~v~g~~d~~~~~~~~---~~f~qcg~ikrnK~t~kPki~~y~dkeT~-----~~KGeatvS~~D~~~akaai 133 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPDSVCENDNA---DFFLQCGVIKRNKRTGKPKIKIYTDKETG-----APKGEATVSYEDPPAAKAAI 133 (351)
T ss_pred cccccccceeeccCccchHHHHH---HHHhhcceeccCCCCCCcchhcccccccc-----CcCCceeeeecChhhhhhhh
Confidence 38889999999999999988886 9999999996 57777777653 46788999999999999999
Q ss_pred HHhcCCccCCeEEEEeecCCCccccccCCCCCCC
Q 003485 178 QSVHGFVLEGKSLKACFGTTKYCHAWLRNVPCTN 211 (816)
Q Consensus 178 qaLNG~~LdGR~LRASfGTTKYCs~FLRg~~C~N 211 (816)
...+|..+.|.+|+|+++.-+-=-.|.|+..|.+
T Consensus 134 ~~~agkdf~gn~ikvs~a~~r~~ve~~rg~~~~~ 167 (351)
T KOG1995|consen 134 EWFAGKDFCGNTIKVSLAERRTGVESVRGGYPND 167 (351)
T ss_pred hhhccccccCCCchhhhhhhccCcccccccccCc
Confidence 9999999999999999998775568999988765
No 81
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.74 E-value=2.1e-05 Score=81.43 Aligned_cols=71 Identities=24% Similarity=0.409 Sum_probs=64.5
Q ss_pred EEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEEE
Q 003485 112 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLK 191 (816)
Q Consensus 112 LVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~LR 191 (816)
.|||+.||+...++|+- ++|-.||+|..|.|. .+++||.|.+.-||..||..+||..|.|-.+.
T Consensus 3 rv~vg~~~~~~~~~d~E---~~f~~yg~~~d~~mk-------------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~v 66 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVE---RFFKGYGKIPDADMK-------------NGFGFVEFEDPRDADDAVHDLDGKELCGERLV 66 (216)
T ss_pred ceeecccCCccchhHHH---HHHhhccccccceee-------------cccceeccCchhhhhcccchhcCceecceeee
Confidence 48999999999999996 899999999999874 24679999999999999999999999998899
Q ss_pred EeecCCC
Q 003485 192 ACFGTTK 198 (816)
Q Consensus 192 ASfGTTK 198 (816)
+.|++.+
T Consensus 67 ve~~r~~ 73 (216)
T KOG0106|consen 67 VEHARGK 73 (216)
T ss_pred eeccccc
Confidence 9998864
No 82
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.69 E-value=2.8e-05 Score=90.48 Aligned_cols=80 Identities=11% Similarity=0.272 Sum_probs=69.2
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 003485 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (816)
Q Consensus 110 rNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~ 189 (816)
-+.|.|.|||+..+..++. ++|+.||.|..|.|.+.... ...+||+||+|-.+.||.+|+.+|.+..|-||.
T Consensus 613 ~tKIlVRNipFeAt~rEVr---~LF~aFGqlksvRlPKK~~k-----~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRr 684 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVR---KLFTAFGQLKSVRLPKKIGK-----GAHRGFGFVDFLTPREAKNAFDALGSTHLYGRR 684 (725)
T ss_pred cceeeeeccchHHHHHHHH---HHHhcccceeeeccchhhcc-----hhhccceeeeccCcHHHHHHHHhhcccceechh
Confidence 3679999999999988885 89999999999999876221 124789999999999999999999999999999
Q ss_pred EEEeecCC
Q 003485 190 LKACFGTT 197 (816)
Q Consensus 190 LRASfGTT 197 (816)
|...|+..
T Consensus 685 LVLEwA~~ 692 (725)
T KOG0110|consen 685 LVLEWAKS 692 (725)
T ss_pred hheehhcc
Confidence 99998753
No 83
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.69 E-value=1.6e-05 Score=83.66 Aligned_cols=79 Identities=18% Similarity=0.476 Sum_probs=66.7
Q ss_pred cCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEEEEeecCC-----CccccccCCCCC
Q 003485 135 GQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKACFGTT-----KYCHAWLRNVPC 209 (816)
Q Consensus 135 GQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~LRASfGTT-----KYCs~FLRg~~C 209 (816)
-+||+|.+++|-.+..- .-.|-|||.|..+|+|++|++.|||-.+.|++|.+.|..- .-|-.|-++ .|
T Consensus 91 ~kygEiee~~Vc~Nl~~------hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~rea~C~~~e~~-~C 163 (260)
T KOG2202|consen 91 DKYGEIEELNVCDNLGD------HLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFREAICGQFERT-EC 163 (260)
T ss_pred HHhhhhhhhhhhcccch------hhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchhhhhhcccccc-cC
Confidence 39999999988654322 1356799999999999999999999999999999998732 359999999 88
Q ss_pred CC-CCCcccccC
Q 003485 210 TN-PDCLYLHEV 220 (816)
Q Consensus 210 ~N-pdCmYLHE~ 220 (816)
.- ..|-|+|=.
T Consensus 164 ~rG~~CnFmH~k 175 (260)
T KOG2202|consen 164 SRGGACNFMHVK 175 (260)
T ss_pred CCCCcCcchhhh
Confidence 87 799999977
No 84
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.62 E-value=1.9e-05 Score=82.03 Aligned_cols=73 Identities=21% Similarity=0.259 Sum_probs=63.8
Q ss_pred EEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEEE
Q 003485 112 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLK 191 (816)
Q Consensus 112 LVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~LR 191 (816)
+|||.+|-..+++ +|| .|+|-|-|.|+||.|...+.+ ..+ ||||.|.++-...-||+.+||..+.|+.|+
T Consensus 11 tl~v~n~~~~v~e-elL--~ElfiqaGPV~kv~ip~~~d~------~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q 80 (267)
T KOG4454|consen 11 TLLVQNMYSGVSE-ELL--SELFIQAGPVYKVGIPSGQDQ------EQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQ 80 (267)
T ss_pred HHHHHhhhhhhhH-HHH--HHHhhccCceEEEeCCCCccC------CCc-eeeeecccccchhhhhhhcccchhccchhh
Confidence 5899999999865 556 599999999999999877654 234 899999999999999999999999999999
Q ss_pred Eee
Q 003485 192 ACF 194 (816)
Q Consensus 192 ASf 194 (816)
+.+
T Consensus 81 ~~~ 83 (267)
T KOG4454|consen 81 RTL 83 (267)
T ss_pred ccc
Confidence 775
No 85
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.58 E-value=0.00011 Score=83.80 Aligned_cols=75 Identities=21% Similarity=0.367 Sum_probs=62.6
Q ss_pred hhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEEEEeecCC-CccccccCCCCCC
Q 003485 132 EYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKACFGTT-KYCHAWLRNVPCT 210 (816)
Q Consensus 132 EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~LRASfGTT-KYCs~FLRg~~C~ 210 (816)
|--++||+|..|.|.+. +-|++||.|.+.+.|..|+.+|||-+++||.|.|.|=.. .|=+-|..-.
T Consensus 472 Eec~k~g~v~hi~vd~n----------s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~~Y~~~FP~~~--- 538 (549)
T KOG0147|consen 472 EECGKHGKVCHIFVDKN----------SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLERYHSKFPDSK--- 538 (549)
T ss_pred HHHHhcCCeeEEEEccC----------CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeehhhhhhhCCCcc---
Confidence 66699999999999653 237899999999999999999999999999999999755 5777776544
Q ss_pred CCCCcccccC
Q 003485 211 NPDCLYLHEV 220 (816)
Q Consensus 211 NpdCmYLHE~ 220 (816)
..|+|+|-.
T Consensus 539 -~~~~~~~~~ 547 (549)
T KOG0147|consen 539 -AAPLLFHTN 547 (549)
T ss_pred -cceeeeecc
Confidence 378888754
No 86
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.55 E-value=0.00029 Score=64.33 Aligned_cols=71 Identities=27% Similarity=0.438 Sum_probs=49.2
Q ss_pred CEEEEeCCCCCCChHHHHHH-HhhhcCCc-ceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 003485 111 NLVYIVGLPLNLGDEDLLQR-REYFGQYG-KVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (816)
Q Consensus 111 NLVYVvGLP~~IaeEDLLKk-~EyFGQYG-KI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR 188 (816)
.+|||.|||.+.....+-.+ +.++..+| +|+.|. ++.|+|.|.+++.|.+|.+-|+|..+.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~---------------~~tAilrF~~~~~A~RA~KRmegEdVfG~ 67 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS---------------GGTAILRFPNQEFAERAQKRMEGEDVFGN 67 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------------TT-EEEEESSHHHHHHHHHHHTT--SSSS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe---------------CCEEEEEeCCHHHHHHHHHhhcccccccc
Confidence 68999999999865555322 67888875 666652 34799999999999999999999999999
Q ss_pred EEEEeecC
Q 003485 189 SLKACFGT 196 (816)
Q Consensus 189 ~LRASfGT 196 (816)
.|.|+|..
T Consensus 68 kI~v~~~~ 75 (90)
T PF11608_consen 68 KISVSFSP 75 (90)
T ss_dssp --EEESS-
T ss_pred eEEEEEcC
Confidence 99999864
No 87
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.52 E-value=0.00015 Score=81.25 Aligned_cols=80 Identities=16% Similarity=0.362 Sum_probs=65.7
Q ss_pred EEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEEEE
Q 003485 113 VYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKA 192 (816)
Q Consensus 113 VYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~LRA 192 (816)
|||.+||.+++.++| .+.|-+||.|++..|.....+. ..+ ++|||+|.+.+++..||++= =..++||.|.|
T Consensus 291 i~V~nlP~da~~~~l---~~~Fk~FG~Ik~~~I~vr~~~~----~~~-~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~V 361 (419)
T KOG0116|consen 291 IFVKNLPPDATPAEL---EEVFKQFGPIKEGGIQVRSPGG----KNP-CFGFVEFENAAAVQNAIEAS-PLEIGGRKLNV 361 (419)
T ss_pred eEeecCCCCCCHHHH---HHHHhhcccccccceEEeccCC----CcC-ceEEEEEeecchhhhhhhcC-ccccCCeeEEE
Confidence 999999999988775 4999999999999996543211 123 89999999999999999987 56789999999
Q ss_pred eecCCCccc
Q 003485 193 CFGTTKYCH 201 (816)
Q Consensus 193 SfGTTKYCs 201 (816)
.--.+.|--
T Consensus 362 eek~~~~~g 370 (419)
T KOG0116|consen 362 EEKRPGFRG 370 (419)
T ss_pred Eeccccccc
Confidence 987766544
No 88
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.51 E-value=0.00017 Score=75.08 Aligned_cols=83 Identities=12% Similarity=0.195 Sum_probs=73.1
Q ss_pred ccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC
Q 003485 107 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (816)
Q Consensus 107 VIQrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~Ld 186 (816)
-+.--.|||+++.+.++.+++- +.|.-+|.|..|.|..++-.+ .++++|||.|.+.+.++.|++ |||..+.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e---~hf~~Cg~i~~~ti~~d~~~~-----~~k~~~yvef~~~~~~~~ay~-l~gs~i~ 168 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIE---LHFESCGGINRVTVPKDKFRG-----HPKGFAYVEFSSYELVEEAYK-LDGSEIP 168 (231)
T ss_pred ccCCceEEEeccccccccchhh---heeeccCCccceeeeccccCC-----CcceeEEEecccHhhhHHHhh-cCCcccc
Confidence 3445679999999999988853 899999999999998887553 368899999999999999999 9999999
Q ss_pred CeEEEEeecCCC
Q 003485 187 GKSLKACFGTTK 198 (816)
Q Consensus 187 GR~LRASfGTTK 198 (816)
|+.|.|++-.|+
T Consensus 169 ~~~i~vt~~r~~ 180 (231)
T KOG4209|consen 169 GPAIEVTLKRTN 180 (231)
T ss_pred cccceeeeeeee
Confidence 999999998887
No 89
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=97.45 E-value=0.0002 Score=76.38 Aligned_cols=78 Identities=23% Similarity=0.443 Sum_probs=67.3
Q ss_pred EEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCc-cCC--e
Q 003485 112 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFV-LEG--K 188 (816)
Q Consensus 112 LVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~-LdG--R 188 (816)
.+||+=|...-.|||++ .+|..||.|..+.|.+...+ ..+|.|||.|.+.-||..||.+|+|+. +-| .
T Consensus 21 klfvgml~kqq~e~dvr---rlf~pfG~~~e~tvlrg~dg------~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASS 91 (371)
T KOG0146|consen 21 KLFVGMLNKQQSEDDVR---RLFQPFGNIEECTVLRGPDG------NSKGCAFVKFSSHAEAQAAINALHGSQTMPGASS 91 (371)
T ss_pred hhhhhhhcccccHHHHH---HHhcccCCcceeEEecCCCC------CCCCceEEEeccchHHHHHHHHhcccccCCCCcc
Confidence 47888888888899997 69999999999999987665 357789999999999999999999986 555 5
Q ss_pred EEEEeecCCC
Q 003485 189 SLKACFGTTK 198 (816)
Q Consensus 189 ~LRASfGTTK 198 (816)
.|.|-|+-|.
T Consensus 92 SLVVK~ADTd 101 (371)
T KOG0146|consen 92 SLVVKFADTD 101 (371)
T ss_pred ceEEEeccch
Confidence 7888898775
No 90
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.40 E-value=0.00026 Score=79.38 Aligned_cols=72 Identities=22% Similarity=0.432 Sum_probs=60.9
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 003485 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (816)
Q Consensus 110 rNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~ 189 (816)
-..|+|.|||..++=. +| ++-|-.||.|+-+.|+..- ..++ -|.|.++|+|++|+..|||..|+||.
T Consensus 536 a~qIiirNlP~dfTWq-ml--rDKfre~G~v~yadime~G--------kskG--VVrF~s~edAEra~a~Mngs~l~Gr~ 602 (608)
T KOG4212|consen 536 ACQIIIRNLPFDFTWQ-ML--RDKFREIGHVLYADIMENG--------KSKG--VVRFFSPEDAERACALMNGSRLDGRN 602 (608)
T ss_pred ccEEEEecCCccccHH-HH--HHHHHhccceehhhhhccC--------Cccc--eEEecCHHHHHHHHHHhccCcccCce
Confidence 5669999999999875 45 3899999999998884321 1233 89999999999999999999999999
Q ss_pred EEEee
Q 003485 190 LKACF 194 (816)
Q Consensus 190 LRASf 194 (816)
|+|.|
T Consensus 603 I~V~y 607 (608)
T KOG4212|consen 603 IKVTY 607 (608)
T ss_pred eeeee
Confidence 99987
No 91
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.36 E-value=0.00052 Score=77.02 Aligned_cols=78 Identities=18% Similarity=0.357 Sum_probs=67.0
Q ss_pred ccccCE-EEEeCCCCCCChHHHHHHHhhh-cCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCc
Q 003485 107 VIQRNL-VYIVGLPLNLGDEDLLQRREYF-GQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFV 184 (816)
Q Consensus 107 VIQrNL-VYVvGLP~~IaeEDLLKk~EyF-GQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~ 184 (816)
|..++. |||.|||+++.=.+|. ++| .+-|+|.-|.+..|..++ +++.|-|+|.++|.+++|++.||-+.
T Consensus 40 ~~~r~R~vfItNIpyd~rWqdLK---dLvrekvGev~yveLl~D~~GK------~rGcavVEFk~~E~~qKa~E~lnk~~ 110 (608)
T KOG4212|consen 40 VAARDRSVFITNIPYDYRWQDLK---DLVREKVGEVEYVELLFDESGK------ARGCAVVEFKDPENVQKALEKLNKYE 110 (608)
T ss_pred cccccceEEEecCcchhhhHhHH---HHHHHhcCceEeeeeecccCCC------cCCceEEEeeCHHHHHHHHHHhhhcc
Confidence 334444 9999999999888874 555 478999999999888774 57889999999999999999999999
Q ss_pred cCCeEEEEe
Q 003485 185 LEGKSLKAC 193 (816)
Q Consensus 185 LdGR~LRAS 193 (816)
+.||.|+|-
T Consensus 111 ~~GR~l~vK 119 (608)
T KOG4212|consen 111 VNGRELVVK 119 (608)
T ss_pred ccCceEEEe
Confidence 999999975
No 92
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.36 E-value=0.00049 Score=76.75 Aligned_cols=102 Identities=24% Similarity=0.329 Sum_probs=79.2
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 003485 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (816)
Q Consensus 110 rNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~ 189 (816)
..+|-|.+|.+..-.+|.| .-+||-||.|.+|.|..++. -.|-|.|++...|+.|+..|+|..+.|++
T Consensus 297 n~vllvsnln~~~VT~d~L--ftlFgvYGdVqRVkil~nkk----------d~ALIQmsd~~qAqLA~~hL~g~~l~gk~ 364 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVL--FTLFGVYGDVQRVKILYNKK----------DNALIQMSDGQQAQLAMEHLEGHKLYGKK 364 (492)
T ss_pred ceEEEEecCchhccchhHH--HHHHhhhcceEEEEeeecCC----------cceeeeecchhHHHHHHHHhhcceecCce
Confidence 5788999998775555655 58999999999999987643 36999999999999999999999999999
Q ss_pred EEEeecCCCccccccCCCCCCCCCCcccccCCCCCCCccHHHHHhhhcc
Q 003485 190 LKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTR 238 (816)
Q Consensus 190 LRASfGTTKYCs~FLRg~~C~NpdCmYLHE~g~~~DsfTKeem~~~~~~ 238 (816)
|||.|.... . .-|--.|.+..-+||+...+-.+|
T Consensus 365 lrvt~SKH~---------~------vqlp~egq~d~glT~dy~~spLhr 398 (492)
T KOG1190|consen 365 LRVTLSKHT---------N------VQLPREGQEDQGLTKDYGNSPLHR 398 (492)
T ss_pred EEEeeccCc---------c------ccCCCCCCccccccccCCCCchhh
Confidence 999986432 1 112334555556788777665555
No 93
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.30 E-value=0.0008 Score=70.60 Aligned_cols=81 Identities=14% Similarity=0.324 Sum_probs=59.4
Q ss_pred CEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC---C
Q 003485 111 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE---G 187 (816)
Q Consensus 111 NLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~Ld---G 187 (816)
+++||.|||.++...||. -+|-.|---.-.-+..+..+. .+. +.+|||||.+..+|..|+.+|||..+| |
T Consensus 35 RTLFVSGLP~DvKpREiy---nLFR~f~GYEgslLK~Tsk~~---~~~-~pvaFatF~s~q~A~aamnaLNGvrFDpE~~ 107 (284)
T KOG1457|consen 35 RTLFVSGLPNDVKPREIY---NLFRRFHGYEGSLLKYTSKGD---QVC-KPVAFATFTSHQFALAAMNALNGVRFDPETG 107 (284)
T ss_pred ceeeeccCCcccCHHHHH---HHhccCCCccceeeeeccCCC---ccc-cceEEEEecchHHHHHHHHHhcCeeeccccC
Confidence 578999999999999984 677766333332232221111 111 357999999999999999999999986 7
Q ss_pred eEEEEeecCCC
Q 003485 188 KSLKACFGTTK 198 (816)
Q Consensus 188 R~LRASfGTTK 198 (816)
.+|++.+|...
T Consensus 108 stLhiElAKSN 118 (284)
T KOG1457|consen 108 STLHIELAKSN 118 (284)
T ss_pred ceeEeeehhcC
Confidence 89999998654
No 94
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=97.11 E-value=0.00019 Score=57.51 Aligned_cols=47 Identities=34% Similarity=0.911 Sum_probs=36.6
Q ss_pred CCCCCCCcccCCCccCCCccccCCCch-hhhhhHhHhHHhhhhcccCCCCCCCCCCCc
Q 003485 5 GEKTCPLCAEEMDLTDQQLKPCKCGYE-ICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (816)
Q Consensus 5 ~d~~CPLC~EelD~tD~~f~PC~CGYQ-IC~fC~h~I~~~~~K~~~~grCPACRr~Yd 61 (816)
++..|++|.+.. .|..|.| ||.. +|..|+.+++. ...+||-||+++.
T Consensus 1 ~~~~C~iC~~~~--~~~~~~p--CgH~~~C~~C~~~~~~------~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENP--RDVVLLP--CGHLCFCEECAERLLK------RKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSB--SSEEEET--TCEEEEEHHHHHHHHH------TTSBBTTTTBB-S
T ss_pred CcCCCccCCccC--CceEEeC--CCChHHHHHHhHHhcc------cCCCCCcCChhhc
Confidence 357899999985 4556665 6899 99999999974 5789999999875
No 95
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.04 E-value=0.0014 Score=75.01 Aligned_cols=62 Identities=18% Similarity=0.386 Sum_probs=51.3
Q ss_pred HhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEEEEee
Q 003485 131 REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKACF 194 (816)
Q Consensus 131 ~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~LRASf 194 (816)
+.-+++||.|.+|.|.+...... .. ...|-+||.|++.+++++|.++|.|..+.||++.++|
T Consensus 427 r~ec~k~g~v~~v~ipr~~~~~~-~~-~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsY 488 (500)
T KOG0120|consen 427 RTECAKFGAVRSVEIPRPYPDEN-PV-PGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASY 488 (500)
T ss_pred HHHhcccCceeEEecCCCCCCCC-cC-CCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEe
Confidence 46689999999999998732211 11 2356799999999999999999999999999999886
No 96
>PLN02189 cellulose synthase
Probab=96.96 E-value=0.00038 Score=84.68 Aligned_cols=50 Identities=26% Similarity=0.893 Sum_probs=43.9
Q ss_pred CCCCCcccCCC--ccCCCccccC-CCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCc
Q 003485 7 KTCPLCAEEMD--LTDQQLKPCK-CGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (816)
Q Consensus 7 ~~CPLC~EelD--~tD~~f~PC~-CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Yd 61 (816)
..|.+|-++++ .+...|..|. |||.+|+.||...+ .+.+..||.|+..|.
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer-----~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYER-----REGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhh-----hcCCccCcccCCchh
Confidence 48999999986 5556899999 99999999998775 468899999999997
No 97
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.95 E-value=0.00089 Score=72.31 Aligned_cols=60 Identities=22% Similarity=0.499 Sum_probs=49.8
Q ss_pred HhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEEEEee
Q 003485 131 REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKACF 194 (816)
Q Consensus 131 ~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~LRASf 194 (816)
.+-.++||+|.+|+|-...... - ......||.|.+.++|.+|+-.|||.+++||+++|+|
T Consensus 304 keEceKyg~V~~viifeip~~p---~-deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 304 KEECEKYGKVGNVIIFEIPSQP---E-DEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHhhcceeeEEEEecCCCc---c-chhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 4788999999999997553211 1 2245689999999999999999999999999999987
No 98
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.91 E-value=0.00083 Score=62.31 Aligned_cols=76 Identities=24% Similarity=0.465 Sum_probs=49.7
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEE-EeecCCccc-cccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 003485 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVS-MSRTAAGVI-QQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (816)
Q Consensus 110 rNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIv-Inrd~~g~~-~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdG 187 (816)
..-|.|-|.|+..+ ..+| ++|++||.|++.. +.++..+.. ...+..+.-.+|+|+++.+|++|++ -||..+.|
T Consensus 6 ~~wVtVFGfp~~~~-~~Vl---~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g 80 (100)
T PF05172_consen 6 ETWVTVFGFPPSAS-NQVL---RHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSG 80 (100)
T ss_dssp CCEEEEE---GGGH-HHHH---HHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETT
T ss_pred CeEEEEEccCHHHH-HHHH---HHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcC
Confidence 45689999999964 4677 8999999999876 222111000 0112334578999999999999998 79999998
Q ss_pred eEE
Q 003485 188 KSL 190 (816)
Q Consensus 188 R~L 190 (816)
..|
T Consensus 81 ~~m 83 (100)
T PF05172_consen 81 SLM 83 (100)
T ss_dssp CEE
T ss_pred cEE
Confidence 766
No 99
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.86 E-value=0.0018 Score=53.33 Aligned_cols=52 Identities=23% Similarity=0.621 Sum_probs=42.1
Q ss_pred CEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHH
Q 003485 111 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCI 177 (816)
Q Consensus 111 NLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAI 177 (816)
+-|=|.|.++... +++| ++|.+||+|.++.+... +-.+||+|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl---~~F~~fGeI~~~~~~~~-----------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVL---EHFASFGEIVDIYVPES-----------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHH---HHHHhcCCEEEEEcCCC-----------CcEEEEEECCHHHHHhhC
Confidence 4577999999875 4566 79999999999988621 236899999999999984
No 100
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=96.82 E-value=0.00033 Score=54.59 Aligned_cols=44 Identities=27% Similarity=0.740 Sum_probs=34.2
Q ss_pred CCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCC
Q 003485 7 KTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACR 57 (816)
Q Consensus 7 ~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACR 57 (816)
++||+|+++|+. +..+...+||..+|.-|+...+. .++.||-||
T Consensus 1 d~C~IC~~~~~~-~~~~~~l~C~H~fh~~Ci~~~~~------~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFED-GEKVVKLPCGHVFHRSCIKEWLK------RNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHT-TSCEEEETTSEEEEHHHHHHHHH------HSSB-TTTH
T ss_pred CCCcCCChhhcC-CCeEEEccCCCeeCHHHHHHHHH------hCCcCCccC
Confidence 479999999965 55666777999999999888764 256999998
No 101
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.80 E-value=0.0022 Score=69.78 Aligned_cols=55 Identities=24% Similarity=0.654 Sum_probs=41.2
Q ss_pred CCCCCCcccCC-CccCCC-ccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcccchh
Q 003485 6 EKTCPLCAEEM-DLTDQQ-LKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIV 66 (816)
Q Consensus 6 d~~CPLC~Eel-D~tD~~-f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Ydee~i~ 66 (816)
+..||+|...- --.+.. +.- +||..+|.-|..+|.. ...+.||.|+++.....+.
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~-~CGH~~C~sCv~~l~~-----~~~~~CP~C~~~lrk~~fr 59 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFV-----RGSGSCPECDTPLRKNNFR 59 (309)
T ss_pred CCCCCcCCCCCccCcccccccC-CCCCcccHHHHHHHhc-----CCCCCCCCCCCccchhhcc
Confidence 46899999853 223333 444 9999999999999963 2457999999999887653
No 102
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.67 E-value=0.0037 Score=58.05 Aligned_cols=58 Identities=26% Similarity=0.430 Sum_probs=37.8
Q ss_pred EEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCC
Q 003485 112 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGF 183 (816)
Q Consensus 112 LVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~ 183 (816)
+|+|.|+...+.-++|- +.|.+||.|.-|.+.+.. -.|||.|.+++.|++|+..+.-.
T Consensus 3 il~~~g~~~~~~re~iK---~~f~~~g~V~yVD~~~G~-----------~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIK---EAFSQFGEVAYVDFSRGD-----------TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp EEEEEE--SS--HHHHH---HHT-SS--EEEEE--TT------------SEEEEEESS---HHHHHHHHHHT
T ss_pred EEEEecCCCCcCHHHHH---HHHHhcCCcceEEecCCC-----------CEEEEEECCcchHHHHHHHHHhc
Confidence 68999999999988874 999999999988876421 26899999999999999887655
No 103
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.61 E-value=0.0032 Score=72.69 Aligned_cols=78 Identities=17% Similarity=0.327 Sum_probs=60.3
Q ss_pred cCEEEEeCCCCCCC-hHHHHHH--HhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC
Q 003485 110 RNLVYIVGLPLNLG-DEDLLQR--REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (816)
Q Consensus 110 rNLVYVvGLP~~Ia-eEDLLKk--~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~Ld 186 (816)
.+.|+|-|+|---. .-+.||. ..+|++||+|+++.+..+..++ ..|++|+.|.+..+|..||+.+||..||
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg------tkG~lf~E~~~~~~A~~aVK~l~G~~ld 131 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG------TKGYLFVEYASMRDAKKAVKSLNGKRLD 131 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC------eeeEEEEEecChhhHHHHHHhcccceec
Confidence 46688888876321 1233443 7899999999999999777664 3688999999999999999999999987
Q ss_pred C-eEEEEe
Q 003485 187 G-KSLKAC 193 (816)
Q Consensus 187 G-R~LRAS 193 (816)
- .++.|.
T Consensus 132 knHtf~v~ 139 (698)
T KOG2314|consen 132 KNHTFFVR 139 (698)
T ss_pred ccceEEee
Confidence 4 455554
No 104
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=96.56 E-value=0.0024 Score=47.34 Aligned_cols=44 Identities=32% Similarity=0.858 Sum_probs=33.3
Q ss_pred CCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCC
Q 003485 8 TCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSP 59 (816)
Q Consensus 8 ~CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~ 59 (816)
.|++|.+.+. ..+..-+||..+|.-|+...... ...+||.||++
T Consensus 1 ~C~iC~~~~~---~~~~~~~C~H~~c~~C~~~~~~~-----~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFR---EPVVLLPCGHVFCRSCIDKWLKS-----GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhh---CceEecCCCChhcHHHHHHHHHh-----CcCCCCCCCCc
Confidence 5999999982 23333349999999999988641 46789999985
No 105
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.52 E-value=0.015 Score=66.48 Aligned_cols=82 Identities=13% Similarity=0.323 Sum_probs=65.4
Q ss_pred EEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEEE
Q 003485 112 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLK 191 (816)
Q Consensus 112 LVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~LR 191 (816)
.|-+.||||..+++||| +||+-. .|..+++.++.. +++|-|||+|..+||+++|++ .|-..+.-|.|.
T Consensus 12 ~vr~rGLPwsat~~ei~---~Ff~~~-~I~~~~~~r~~G-------r~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIE 79 (510)
T KOG4211|consen 12 EVRLRGLPWSATEKEIL---DFFSNC-GIENLEIPRRNG-------RPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIE 79 (510)
T ss_pred EEEecCCCccccHHHHH---HHHhcC-ceeEEEEeccCC-------CcCcceEEEeechHHHHHHHH-hhHHHhCCceEE
Confidence 46678999999999998 999998 578888887642 357889999999999999998 677788889998
Q ss_pred EeecCCCccccccC
Q 003485 192 ACFGTTKYCHAWLR 205 (816)
Q Consensus 192 ASfGTTKYCs~FLR 205 (816)
|-=++.+--...+|
T Consensus 80 Vf~~~~~e~d~~~~ 93 (510)
T KOG4211|consen 80 VFTAGGAEADWVMR 93 (510)
T ss_pred EEccCCcccccccc
Confidence 87665554433333
No 106
>PLN02436 cellulose synthase A
Probab=96.52 E-value=0.0012 Score=80.55 Aligned_cols=50 Identities=26% Similarity=0.886 Sum_probs=43.5
Q ss_pred CCCCCcccCC--CccCCCccccC-CCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCc
Q 003485 7 KTCPLCAEEM--DLTDQQLKPCK-CGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (816)
Q Consensus 7 ~~CPLC~Eel--D~tD~~f~PC~-CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Yd 61 (816)
.+|.+|-+++ +.+-..|.-|. |||.+|+.||...+ .+.+..||.|+..|+
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer-----~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYER-----REGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhh-----hcCCccCcccCCchh
Confidence 3899999998 45556899999 99999999998775 468899999999998
No 107
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.51 E-value=0.021 Score=53.01 Aligned_cols=82 Identities=20% Similarity=0.248 Sum_probs=64.0
Q ss_pred cCEEEEeCCCCCCChHHHHHH-HhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC--
Q 003485 110 RNLVYIVGLPLNLGDEDLLQR-REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE-- 186 (816)
Q Consensus 110 rNLVYVvGLP~~IaeEDLLKk-~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~Ld-- 186 (816)
|++|-|.|||.+++.++|+.- .+.| .|+.-=+.++.|..+. ...|+|||.|.+.+.|.+-.+.++|..+.
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~--~g~yDF~YLPiDf~~~-----~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~ 73 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHF--KGKYDFFYLPIDFKNK-----CNLGYAFVNFTSPQAAIRFYKAFNGKKWPNF 73 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhc--cCcceEEEeeeeccCC-----CceEEEEEEcCCHHHHHHHHHHHcCCccccC
Confidence 578999999999999988642 2333 3666667777775442 46789999999999999999999999875
Q ss_pred --CeEEEEeecCCC
Q 003485 187 --GKSLKACFGTTK 198 (816)
Q Consensus 187 --GR~LRASfGTTK 198 (816)
.++..++||+..
T Consensus 74 ~s~Kvc~i~yAriQ 87 (97)
T PF04059_consen 74 NSKKVCEISYARIQ 87 (97)
T ss_pred CCCcEEEEehhHhh
Confidence 567778887654
No 108
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.44 E-value=0.0022 Score=73.43 Aligned_cols=84 Identities=19% Similarity=0.311 Sum_probs=72.5
Q ss_pred cccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCcc
Q 003485 106 RVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (816)
Q Consensus 106 RVIQrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~L 185 (816)
-..+.+.+||+|||..+.+..++ |+.+-||.+....+.++..++ .++++||-.|.+.-.+..||..|||..+
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~---Ell~~fg~lk~f~lv~d~~~g-----~skg~af~ey~dpsvtd~A~agLnGm~l 356 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVK---ELLDSFGPLKAFRLVKDSATG-----NSKGFAFCEYCDPSVTDQAIAGLNGMQL 356 (500)
T ss_pred cccccchhhhccCcCccCHHHHH---HHHHhcccchhheeecccccc-----cccceeeeeeeCCcchhhhhcccchhhh
Confidence 46678999999999999888876 899999999888887776543 4678999999999999999999999999
Q ss_pred CCeEEEEeecCC
Q 003485 186 EGKSLKACFGTT 197 (816)
Q Consensus 186 dGR~LRASfGTT 197 (816)
.|+.|.|..+-.
T Consensus 357 gd~~lvvq~A~~ 368 (500)
T KOG0120|consen 357 GDKKLVVQRAIV 368 (500)
T ss_pred cCceeEeehhhc
Confidence 999999886643
No 109
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=96.36 E-value=0.0034 Score=64.47 Aligned_cols=59 Identities=24% Similarity=0.632 Sum_probs=41.6
Q ss_pred cCCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhh----------hcccCCCCCCCCCCCcccchh
Q 003485 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAE----------KEETEGRCPACRSPYDKEKIV 66 (816)
Q Consensus 4 e~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~----------K~~~~grCPACRr~Ydee~i~ 66 (816)
+++.+||+|.+.+ +|... -.||..+|+-|..+...... ......+||-||.++....+.
T Consensus 16 ~~~~~CpICld~~--~dPVv--T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~Lv 84 (193)
T PLN03208 16 GGDFDCNICLDQV--RDPVV--TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLV 84 (193)
T ss_pred CCccCCccCCCcC--CCcEE--cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEE
Confidence 3467999999987 45554 36999988888877643110 012356899999999877664
No 110
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.22 E-value=0.0026 Score=68.19 Aligned_cols=85 Identities=14% Similarity=0.238 Sum_probs=71.6
Q ss_pred CEEE-EeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 003485 111 NLVY-IVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (816)
Q Consensus 111 NLVY-VvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~ 189 (816)
-++| |++|+..+++++|. ++|+.+|.|+.|.+..+..+. ...++|||.|....++..|+.. .+..++|++
T Consensus 185 ~~~~~~~~~~f~~~~d~~~---~~~~~~~~i~~~r~~~~~~s~-----~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~ 255 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLK---EHFVSSGEITSVRLPTDEESG-----DSKGFAYVDFSAGNSKKLALND-QTRSIGGRP 255 (285)
T ss_pred ccceeecccccccchHHHh---hhccCcCcceeeccCCCCCcc-----chhhhhhhhhhhchhHHHHhhc-ccCcccCcc
Confidence 4566 99999999888874 899999999999998766553 3578999999999999999998 889999999
Q ss_pred EEEeecCCC---cccccc
Q 003485 190 LKACFGTTK---YCHAWL 204 (816)
Q Consensus 190 LRASfGTTK---YCs~FL 204 (816)
+++.++... ||.-|.
T Consensus 256 ~~~~~~~~~~~~~~~~~~ 273 (285)
T KOG4210|consen 256 LRLEEDEPRPKSDGGLFG 273 (285)
T ss_pred cccccCCCCccccccccc
Confidence 999999765 444443
No 111
>PHA02929 N1R/p28-like protein; Provisional
Probab=96.09 E-value=0.0054 Score=64.69 Aligned_cols=51 Identities=24% Similarity=0.599 Sum_probs=38.2
Q ss_pred CCCCCCCcccCCCccCC----CccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCc
Q 003485 5 GEKTCPLCAEEMDLTDQ----QLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (816)
Q Consensus 5 ~d~~CPLC~EelD~tD~----~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Yd 61 (816)
++.+||+|+|++..... --...+||...|+-|...-+. ....||-||+++.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~------~~~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK------EKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh------cCCCCCCCCCEee
Confidence 46899999999753321 124568999999999877653 4679999999765
No 112
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=95.95 E-value=0.0062 Score=64.99 Aligned_cols=74 Identities=15% Similarity=0.288 Sum_probs=62.4
Q ss_pred EEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEEE
Q 003485 112 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLK 191 (816)
Q Consensus 112 LVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~LR 191 (816)
.||-+-|..++.+ |+| ...|.+|=.-.+..|+|+..++ ...|++||.|.+.+|+.+|+..|||..++.|+|+
T Consensus 192 RIfcgdlgNevnd-~vl--~raf~Kfpsf~~akviRdkRTg-----KSkgygfVSf~~pad~~rAmrem~gkyVgsrpik 263 (290)
T KOG0226|consen 192 RIFCGDLGNEVND-DVL--ARAFKKFPSFQKAKVIRDKRTG-----KSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIK 263 (290)
T ss_pred eeecccccccccH-HHH--HHHHHhccchhhcccccccccc-----ccccceeeeecCHHHHHHHHHhhcccccccchhH
Confidence 4677778888865 556 3699999999999999887654 4577899999999999999999999999999998
Q ss_pred Ee
Q 003485 192 AC 193 (816)
Q Consensus 192 AS 193 (816)
+-
T Consensus 264 lR 265 (290)
T KOG0226|consen 264 LR 265 (290)
T ss_pred hh
Confidence 65
No 113
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.93 E-value=0.003 Score=67.22 Aligned_cols=77 Identities=19% Similarity=0.305 Sum_probs=58.3
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccc------cCCCce-EEEEEeCCHHHHHHHHHHhcC
Q 003485 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQ------FPNNTC-SVYITYSKEEEAVRCIQSVHG 182 (816)
Q Consensus 110 rNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q------~ps~rg-sAYVTFs~~EDA~rAIqaLNG 182 (816)
...||+.+||+.+...-| +++|++||+|=.|.+-.......-+ .....+ -++|.|.++..|.++...|||
T Consensus 74 ~GVvylS~IPp~m~~~rl---Reil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn 150 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRL---REILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNN 150 (278)
T ss_pred ceEEEeccCCCccCHHHH---HHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCC
Confidence 488999999999976554 4999999999999996543320000 000111 358999999999999999999
Q ss_pred CccCCeE
Q 003485 183 FVLEGKS 189 (816)
Q Consensus 183 ~~LdGR~ 189 (816)
.+++|+.
T Consensus 151 ~~Iggkk 157 (278)
T KOG3152|consen 151 TPIGGKK 157 (278)
T ss_pred CccCCCC
Confidence 9999974
No 114
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=95.68 E-value=0.0061 Score=63.55 Aligned_cols=75 Identities=21% Similarity=0.334 Sum_probs=58.7
Q ss_pred Cccccccc--cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHH
Q 003485 102 LSSVRVIQ--RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQS 179 (816)
Q Consensus 102 LanVRVIQ--rNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqa 179 (816)
+...++.- .-.+.|-+|+.++...+|- ++|++||++...+++ ..++||.|+.++||.+||..
T Consensus 89 ~~~~~~p~~s~~r~~~~~~~~r~~~qdl~---d~~~~~g~~~~~~~~-------------~~~~~v~Fs~~~da~ra~~~ 152 (216)
T KOG0106|consen 89 SRRYRPPSRTHFRLIVRNLSLRVSWQDLK---DHFRPAGEVTYVDAR-------------RNFAFVEFSEQEDAKRALEK 152 (216)
T ss_pred hhccCCcccccceeeeccchhhhhHHHHh---hhhcccCCCchhhhh-------------ccccceeehhhhhhhhcchh
Confidence 44444422 2345667778787777774 999999999555542 24689999999999999999
Q ss_pred hcCCccCCeEEEE
Q 003485 180 VHGFVLEGKSLKA 192 (816)
Q Consensus 180 LNG~~LdGR~LRA 192 (816)
|+|..+.|+.|++
T Consensus 153 l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 153 LDGKKLNGRRISV 165 (216)
T ss_pred ccchhhcCceeee
Confidence 9999999999999
No 115
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.65 E-value=0.04 Score=61.57 Aligned_cols=76 Identities=20% Similarity=0.313 Sum_probs=64.1
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 003485 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (816)
Q Consensus 109 QrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR 188 (816)
+.-.+-|.||...--+-|.| ..+|-+||.|.+|..++++. +.|-|++.+.++-++||..||+..+.|.
T Consensus 286 ~g~VmMVyGLdh~k~N~drl--FNl~ClYGNV~rvkFmkTk~----------gtamVemgd~~aver~v~hLnn~~lfG~ 353 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRL--FNLFCLYGNVERVKFMKTKP----------GTAMVEMGDAYAVERAVTHLNNIPLFGG 353 (494)
T ss_pred CCcEEEEEeccccccchhhh--hhhhhhcCceeeEEEeeccc----------ceeEEEcCcHHHHHHHHHHhccCccccc
Confidence 34568899998865555555 58999999999999998753 4689999999999999999999999999
Q ss_pred EEEEeecC
Q 003485 189 SLKACFGT 196 (816)
Q Consensus 189 ~LRASfGT 196 (816)
+|.+.+..
T Consensus 354 kl~v~~Sk 361 (494)
T KOG1456|consen 354 KLNVCVSK 361 (494)
T ss_pred eEEEeecc
Confidence 99998743
No 116
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.52 E-value=0.013 Score=65.49 Aligned_cols=81 Identities=21% Similarity=0.431 Sum_probs=62.8
Q ss_pred cCccccccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeE---EEEeecCCccccccCCCceEEEEEeCCHHHHHHHH
Q 003485 101 QLSSVRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLK---VSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCI 177 (816)
Q Consensus 101 ~LanVRVIQrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~K---IvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAI 177 (816)
+....|+ ++.|-+.|||+..+.|||| +|||.|-.-++ |-|..+..+ +++|-|||.|.+.|+|..|.
T Consensus 273 ~~p~~~~--kdcvRLRGLPy~AtvEdIL---~FlgdFa~~i~f~gVHmv~N~qG------rPSGeAFIqm~nae~a~aaa 341 (508)
T KOG1365|consen 273 LVPPTRS--KDCVRLRGLPYEATVEDIL---DFLGDFATDIRFQGVHMVLNGQG------RPSGEAFIQMRNAERARAAA 341 (508)
T ss_pred cCCCCCC--CCeeEecCCChhhhHHHHH---HHHHHHhhhcccceeEEEEcCCC------CcChhhhhhhhhhHHHHHHH
Confidence 4444444 8999999999999999999 99999987654 334444333 46889999999999999999
Q ss_pred HHhcCCccCCeEEEE
Q 003485 178 QSVHGFVLEGKSLKA 192 (816)
Q Consensus 178 qaLNG~~LdGR~LRA 192 (816)
+..+.....+|.|.|
T Consensus 342 qk~hk~~mk~RYiEv 356 (508)
T KOG1365|consen 342 QKCHKKLMKSRYIEV 356 (508)
T ss_pred HHHHHhhcccceEEE
Confidence 999887665555554
No 117
>PLN02248 cellulose synthase-like protein
Probab=95.41 E-value=0.014 Score=72.14 Aligned_cols=50 Identities=36% Similarity=1.046 Sum_probs=37.8
Q ss_pred CCC--CCcccCC--CccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcc
Q 003485 7 KTC--PLCAEEM--DLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (816)
Q Consensus 7 ~~C--PLC~Eel--D~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Yde 62 (816)
..| |-|-... |..-....||.|+|.||+-||-.-+. ..|.||+|+.+|..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 178 (1135)
T PLN02248 125 SSCAMPGCDGKVMRDERGEDLLPCECGFKICRDCYIDAVK------SGGICPGCKEPYKV 178 (1135)
T ss_pred CcccccCcccccccccccccCCcccccchhHHhHhhhhhh------cCCCCCCCcccccc
Confidence 455 4566554 33335689999999999999987652 38999999999943
No 118
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=95.35 E-value=0.017 Score=47.21 Aligned_cols=50 Identities=22% Similarity=0.327 Sum_probs=37.8
Q ss_pred CCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcccch
Q 003485 6 EKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (816)
Q Consensus 6 d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Ydee~i 65 (816)
+..||+|.+.|+ |.... +||+-+|+-|...... + ++.||-|++++..+.+
T Consensus 1 ~~~Cpi~~~~~~--~Pv~~--~~G~v~~~~~i~~~~~---~---~~~cP~~~~~~~~~~l 50 (63)
T smart00504 1 EFLCPISLEVMK--DPVIL--PSGQTYERRAIEKWLL---S---HGTDPVTGQPLTHEDL 50 (63)
T ss_pred CcCCcCCCCcCC--CCEEC--CCCCEEeHHHHHHHHH---H---CCCCCCCcCCCChhhc
Confidence 357999999985 44444 5799988888887763 2 6899999999866544
No 119
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=95.21 E-value=0.027 Score=63.38 Aligned_cols=71 Identities=23% Similarity=0.336 Sum_probs=55.3
Q ss_pred EEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCc-cCC-eEEE
Q 003485 114 YIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFV-LEG-KSLK 191 (816)
Q Consensus 114 YVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~-LdG-R~LR 191 (816)
.|.++-+.++- |+| +.+|.+||.|.||+--.. +.++.|-|.|.+.+.|..|-.+|||.. ++| .+||
T Consensus 154 iie~m~ypVsl-DVL--HqvFS~fG~VlKIiTF~K---------nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLr 221 (492)
T KOG1190|consen 154 IIENMFYPVSL-DVL--HQVFSKFGFVLKIITFTK---------NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLR 221 (492)
T ss_pred EeccceeeeEH-HHH--HHHHhhcceeEEEEEEec---------ccchhhhhhccchhhHHHHHHhccCCcccCceeEEE
Confidence 34455555544 677 799999999999986532 246889999999999999999999976 456 4899
Q ss_pred EeecC
Q 003485 192 ACFGT 196 (816)
Q Consensus 192 ASfGT 196 (816)
+.|..
T Consensus 222 Id~Sk 226 (492)
T KOG1190|consen 222 IDFSK 226 (492)
T ss_pred eehhh
Confidence 88853
No 120
>PLN02195 cellulose synthase A
Probab=95.03 E-value=0.015 Score=70.93 Aligned_cols=57 Identities=30% Similarity=0.770 Sum_probs=46.9
Q ss_pred CCccCCCCCCCcccCCCccC--CCccccC-CCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcc
Q 003485 1 MSDEGEKTCPLCAEEMDLTD--QQLKPCK-CGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (816)
Q Consensus 1 msde~d~~CPLC~EelD~tD--~~f~PC~-CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Yde 62 (816)
|-+-....|.+|-++++++. ..|.-|. |||.+|+-||..= +.+.+-.||-|...|.|
T Consensus 1 ~~~~~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeye-----r~eg~q~CpqCkt~Yk~ 60 (977)
T PLN02195 1 MMESGAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYE-----IKEGRKVCLRCGGPYDA 60 (977)
T ss_pred CCcCCCccceecccccCcCCCCCeEEEeccCCCccccchhhhh-----hhcCCccCCccCCcccc
Confidence 44555679999999887765 4688998 9999999999653 45788999999999984
No 121
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.95 E-value=0.056 Score=53.71 Aligned_cols=56 Identities=27% Similarity=0.586 Sum_probs=43.3
Q ss_pred HHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEEEEeecCCC
Q 003485 126 DLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKACFGTTK 198 (816)
Q Consensus 126 DLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~LRASfGTTK 198 (816)
+|| +.|.+||+|+=|++.-+ .-+|||.+-+.|.+|+. +||..+.|+.|++..-|+-
T Consensus 52 ~ll---~~~~~~GevvLvRfv~~-------------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELL---QKFAQYGEVVLVRFVGD-------------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHH---HHHHCCS-ECEEEEETT-------------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHH---HHHHhCCceEEEEEeCC-------------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 456 89999999887766532 36999999999998876 9999999999999986643
No 122
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.84 E-value=0.042 Score=61.82 Aligned_cols=52 Identities=23% Similarity=0.673 Sum_probs=39.7
Q ss_pred cCCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcccch
Q 003485 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (816)
Q Consensus 4 e~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Ydee~i 65 (816)
+.+..||+|.+.|. +... =+||..+|.-|....+. ..+.||.||.++....+
T Consensus 24 e~~l~C~IC~d~~~--~Pvi--tpCgH~FCs~CI~~~l~------~~~~CP~Cr~~~~~~~L 75 (397)
T TIGR00599 24 DTSLRCHICKDFFD--VPVL--TSCSHTFCSLCIRRCLS------NQPKCPLCRAEDQESKL 75 (397)
T ss_pred ccccCCCcCchhhh--CccC--CCCCCchhHHHHHHHHh------CCCCCCCCCCccccccC
Confidence 34679999999884 2332 37999999999988763 24689999999887644
No 123
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.016 Score=56.38 Aligned_cols=48 Identities=31% Similarity=0.696 Sum_probs=39.4
Q ss_pred cCCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCc
Q 003485 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (816)
Q Consensus 4 e~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Yd 61 (816)
+++..||+|++.|... .--+||.-+|..|...+.. ..-+||.||.+|.
T Consensus 11 ~~~~~C~iC~~~~~~p----~~l~C~H~~c~~C~~~~~~------~~~~Cp~cr~~~~ 58 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP----VLLPCGHNFCRACLTRSWE------GPLSCPVCRPPSR 58 (386)
T ss_pred cccccChhhHHHhhcC----ccccccchHhHHHHHHhcC------CCcCCcccCCchh
Confidence 4678999999999765 6667999999999999964 4579999995444
No 124
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=94.58 E-value=0.019 Score=44.03 Aligned_cols=39 Identities=28% Similarity=0.905 Sum_probs=29.7
Q ss_pred CCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCC
Q 003485 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPAC 56 (816)
Q Consensus 9 CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPAC 56 (816)
||+|++.+.. .+.--+||.-+|.-||.+.++ . +.+||.|
T Consensus 1 C~iC~~~~~~---~~~~~~CGH~fC~~C~~~~~~-----~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD---PVVVTPCGHSFCKECIEKYLE-----K-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS---EEEECTTSEEEEHHHHHHHHH-----C-TSB-TTT
T ss_pred CCCCCCcccC---cCEECCCCCchhHHHHHHHHH-----C-cCCCcCC
Confidence 8999998743 445578999999999999874 2 5899988
No 125
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=94.55 E-value=0.091 Score=55.23 Aligned_cols=77 Identities=14% Similarity=0.409 Sum_probs=64.0
Q ss_pred ccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC
Q 003485 107 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (816)
Q Consensus 107 VIQrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~Ld 186 (816)
--+.+.+|+.+||.....| +| ..+|.||.--..|++... .++.|||+|.+...|..|.+++.|+.+-
T Consensus 143 ~ppn~ilf~~niP~es~~e-~l--~~lf~qf~g~keir~i~~----------~~~iAfve~~~d~~a~~a~~~lq~~~it 209 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESE-ML--SDLFEQFPGFKEIRLIPP----------RSGIAFVEFLSDRQASAAQQALQGFKIT 209 (221)
T ss_pred CCCceEEEEecCCcchhHH-HH--HHHHhhCcccceeEeccC----------CCceeEEecchhhhhHHHhhhhccceec
Confidence 3456889999999997554 44 389999999999998753 2468999999999999999999999876
Q ss_pred -CeEEEEeecC
Q 003485 187 -GKSLKACFGT 196 (816)
Q Consensus 187 -GR~LRASfGT 196 (816)
..+|++.|+.
T Consensus 210 ~~~~m~i~~a~ 220 (221)
T KOG4206|consen 210 KKNTMQITFAK 220 (221)
T ss_pred cCceEEecccC
Confidence 8888888863
No 126
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=94.41 E-value=0.043 Score=43.22 Aligned_cols=44 Identities=25% Similarity=0.722 Sum_probs=36.7
Q ss_pred CCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCC
Q 003485 8 TCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRS 58 (816)
Q Consensus 8 ~CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr 58 (816)
.|++|.+++ ..+..++-=.||..+|.-|...+. .....||.||+
T Consensus 1 ~C~~C~~~~-~~~~~~~l~~CgH~~C~~C~~~~~------~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKY-SEERRPRLTSCGHIFCEKCLKKLK------GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccc-cCCCCeEEcccCCHHHHHHHHhhc------CCCCCCcCCCC
Confidence 499999999 344568888999999999999884 34789999996
No 127
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=94.29 E-value=0.093 Score=62.34 Aligned_cols=74 Identities=19% Similarity=0.387 Sum_probs=62.3
Q ss_pred EEEEeCCCCCCChHHHHHHHhhhcCCcceeE-EEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEE
Q 003485 112 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLK-VSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 190 (816)
Q Consensus 112 LVYVvGLP~~IaeEDLLKk~EyFGQYGKI~K-IvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~L 190 (816)
.|-+.|+|.+++-|||+ +||.-|-.+-. |.+-++..+ -++|-+-|-|++++||.+|...+||..|..|+|
T Consensus 869 V~~~~n~Pf~v~l~dI~---~FF~dY~~~p~sI~~r~nd~G------~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V 939 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIV---EFFNDYEPDPNSIRIRRNDDG------VPTGECMVAFESQEEARRASMDLDGQKIRNRVV 939 (944)
T ss_pred EEEecCCCccccHHHHH---HHhcccccCCCceeEeecCCC------CcccceeEeecCHHHHHhhhhccccCcccceeE
Confidence 45677999999999999 99999988865 444444444 357889999999999999999999999999999
Q ss_pred EEee
Q 003485 191 KACF 194 (816)
Q Consensus 191 RASf 194 (816)
++.+
T Consensus 940 ~l~i 943 (944)
T KOG4307|consen 940 SLRI 943 (944)
T ss_pred EEEe
Confidence 8765
No 128
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=94.29 E-value=0.052 Score=38.70 Aligned_cols=39 Identities=31% Similarity=0.860 Sum_probs=29.6
Q ss_pred CCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCC
Q 003485 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPAC 56 (816)
Q Consensus 9 CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPAC 56 (816)
|++|.+.. + ....-+||..+|..|+..+.. .....||.|
T Consensus 1 C~iC~~~~--~--~~~~~~C~H~~c~~C~~~~~~-----~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL--K--DPVVLPCGHTFCRSCIRKWLK-----SGNNTCPIC 39 (39)
T ss_pred CCcCccCC--C--CcEEecCCChHHHHHHHHHHH-----hCcCCCCCC
Confidence 89998883 3 444446999999999998864 356789987
No 129
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=94.17 E-value=0.042 Score=54.01 Aligned_cols=57 Identities=26% Similarity=0.785 Sum_probs=44.2
Q ss_pred ccCCCCCCCcccCCCccCCCc-cccC-CCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcccc
Q 003485 3 DEGEKTCPLCAEEMDLTDQQL-KPCK-CGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEK 64 (816)
Q Consensus 3 de~d~~CPLC~EelD~tD~~f-~PC~-CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Ydee~ 64 (816)
|..--+|.+|-|-- +|..| +|=. |||.||--||-.+-..+ +....||+|+.-|-.+.
T Consensus 77 d~~lYeCnIC~etS--~ee~FLKPneCCgY~iCn~Cya~LWK~~---~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 77 DPKLYECNICKETS--AEERFLKPNECCGYSICNACYANLWKFC---NLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CCCceeccCccccc--chhhcCCcccccchHHHHHHHHHHHHHc---ccCCCCCcccccccccc
Confidence 33446899999876 55555 8877 59999999999988644 47899999999775543
No 130
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=93.83 E-value=0.054 Score=49.02 Aligned_cols=53 Identities=23% Similarity=0.824 Sum_probs=24.9
Q ss_pred CCCCCCCcccCCCc--cCCCccccC-CCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcc
Q 003485 5 GEKTCPLCAEEMDL--TDQQLKPCK-CGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (816)
Q Consensus 5 ~d~~CPLC~EelD~--tD~~f~PC~-CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Yde 62 (816)
....|.+|-+.+-+ +-..|.-|. |+|-||+-||..=+ .+.+-.||-|+.+|..
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYEr-----keg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYER-----KEGNQVCPQCKTRYKR 63 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHH-----HTS-SB-TTT--B---
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHh-----hcCcccccccCCCccc
Confidence 45789999998744 445799998 99999999999654 3477889999999974
No 131
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.78 E-value=0.053 Score=55.51 Aligned_cols=52 Identities=23% Similarity=0.746 Sum_probs=40.8
Q ss_pred CCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcccch
Q 003485 6 EKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (816)
Q Consensus 6 d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Ydee~i 65 (816)
-..||+||+.+ +.+...-=+||.-+|.-|....+. ....||-||+..++..+
T Consensus 131 ~~~CPiCl~~~--sek~~vsTkCGHvFC~~Cik~alk------~~~~CP~C~kkIt~k~~ 182 (187)
T KOG0320|consen 131 TYKCPICLDSV--SEKVPVSTKCGHVFCSQCIKDALK------NTNKCPTCRKKITHKQF 182 (187)
T ss_pred ccCCCceecch--hhccccccccchhHHHHHHHHHHH------hCCCCCCcccccchhhh
Confidence 46799999987 445556678999999999988875 46789999996665543
No 132
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=93.68 E-value=0.25 Score=55.61 Aligned_cols=72 Identities=19% Similarity=0.298 Sum_probs=58.1
Q ss_pred EeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCcc-CC-eEEEE
Q 003485 115 IVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL-EG-KSLKA 192 (816)
Q Consensus 115 VvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~L-dG-R~LRA 192 (816)
|.|--+.|+. |+| +.+--.-|+|+.|+|.+.. +..|-|+|++.+.|++|-.+|||..+ -| .+||+
T Consensus 127 IlNp~YpItv-DVl--y~Icnp~GkVlRIvIfkkn----------gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKI 193 (494)
T KOG1456|consen 127 ILNPQYPITV-DVL--YTICNPQGKVLRIVIFKKN----------GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKI 193 (494)
T ss_pred eecCccccch-hhh--hhhcCCCCceEEEEEEecc----------ceeeEEeechhHHHHHHHhhcccccccccceeEEE
Confidence 3444445654 666 6899999999999998752 45799999999999999999999875 45 69999
Q ss_pred eecCCCc
Q 003485 193 CFGTTKY 199 (816)
Q Consensus 193 SfGTTKY 199 (816)
.||..-.
T Consensus 194 eyAkP~r 200 (494)
T KOG1456|consen 194 EYAKPTR 200 (494)
T ss_pred EecCcce
Confidence 9997653
No 133
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=93.25 E-value=0.05 Score=41.47 Aligned_cols=41 Identities=27% Similarity=0.726 Sum_probs=33.0
Q ss_pred CCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCC
Q 003485 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPAC 56 (816)
Q Consensus 9 CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPAC 56 (816)
||+|.+.+.... ..=+||..+|..|+.++++. .....||-|
T Consensus 1 C~iC~~~~~~~~---~~~~C~H~fC~~C~~~~~~~----~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV---ILLPCGHSFCRDCLRKWLEN----SGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE---EETTTSEEEEHHHHHHHHHH----TSSSBTTTT
T ss_pred CCcCCccccCCC---EEecCCCcchHHHHHHHHHh----cCCccCCcC
Confidence 899999986533 56678999999999999752 467789987
No 134
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.18 E-value=0.14 Score=56.03 Aligned_cols=65 Identities=23% Similarity=0.393 Sum_probs=51.9
Q ss_pred CEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEE
Q 003485 111 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 190 (816)
Q Consensus 111 NLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~L 190 (816)
.-|-|-|.|+.-.. =+| ..|.+||.|+|.+... .+...||.|..+-+|.+||. -||..|+|-++
T Consensus 198 ~WVTVfGFppg~~s-~vL---~~F~~cG~Vvkhv~~~-----------ngNwMhirYssr~~A~KALs-kng~ii~g~vm 261 (350)
T KOG4285|consen 198 TWVTVFGFPPGQVS-IVL---NLFSRCGEVVKHVTPS-----------NGNWMHIRYSSRTHAQKALS-KNGTIIDGDVM 261 (350)
T ss_pred ceEEEeccCccchh-HHH---HHHHhhCeeeeeecCC-----------CCceEEEEecchhHHHHhhh-hcCeeeccceE
Confidence 44778898887433 456 6999999999998762 24478999999999999997 68999988765
Q ss_pred E
Q 003485 191 K 191 (816)
Q Consensus 191 R 191 (816)
-
T Consensus 262 i 262 (350)
T KOG4285|consen 262 I 262 (350)
T ss_pred E
Confidence 4
No 135
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=93.16 E-value=0.063 Score=62.79 Aligned_cols=74 Identities=27% Similarity=0.311 Sum_probs=56.5
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCc-ceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCcc---
Q 003485 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYG-KVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL--- 185 (816)
Q Consensus 110 rNLVYVvGLP~~IaeEDLLKk~EyFGQYG-KI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~L--- 185 (816)
-|.|||.||-.-++.-.|. +++|+-| .|...+|- +.. . -.||+|.+.+||..-+.+|||..+
T Consensus 444 SnvlhI~nLvRPFTlgQLk---elL~rtgg~Vee~WmD--kIK-------S--hCyV~yss~eEA~atr~AlhnV~WP~s 509 (718)
T KOG2416|consen 444 SNVLHIDNLVRPFTLGQLK---ELLGRTGGNVEEFWMD--KIK-------S--HCYVSYSSVEEAAATREALHNVQWPPS 509 (718)
T ss_pred cceEeeecccccchHHHHH---HHHhhccCchHHHHHH--Hhh-------c--ceeEecccHHHHHHHHHHHhccccCCC
Confidence 5999999999999877764 8999555 44555442 211 1 259999999999999999999875
Q ss_pred CCeEEEEeecCC
Q 003485 186 EGKSLKACFGTT 197 (816)
Q Consensus 186 dGR~LRASfGTT 197 (816)
+++-|-|.|++.
T Consensus 510 NPK~L~adf~~~ 521 (718)
T KOG2416|consen 510 NPKHLIADFVRA 521 (718)
T ss_pred CCceeEeeecch
Confidence 667888888753
No 136
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.08 E-value=0.1 Score=63.28 Aligned_cols=82 Identities=17% Similarity=0.220 Sum_probs=66.4
Q ss_pred CccccccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhc
Q 003485 102 LSSVRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVH 181 (816)
Q Consensus 102 LanVRVIQrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLN 181 (816)
|.+..+.--.-++|+||.+.....-|+ ..|+.||.|..|.+-.. ...|||.|+...-|..|...|-
T Consensus 447 lG~~kst~ttr~~sgglg~w~p~~~l~---r~fd~fGpir~Idy~hg-----------q~yayi~yes~~~aq~a~~~~r 512 (975)
T KOG0112|consen 447 LGQPKSTPTTRLQSGGLGPWSPVSRLN---REFDRFGPIRIIDYRHG-----------QPYAYIQYESPPAAQAATHDMR 512 (975)
T ss_pred ccccccccceeeccCCCCCCChHHHHH---HHhhccCcceeeecccC-----------CcceeeecccCccchhhHHHHh
Confidence 333345666779999999998776665 79999999999876321 2368999999999999999999
Q ss_pred CCccCC--eEEEEeecCC
Q 003485 182 GFVLEG--KSLKACFGTT 197 (816)
Q Consensus 182 G~~LdG--R~LRASfGTT 197 (816)
|+.|+| +.|+|.|+-+
T Consensus 513 gap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 513 GAPLGGPPRRLRVDLASP 530 (975)
T ss_pred cCcCCCCCcccccccccC
Confidence 999987 7899998754
No 137
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=93.08 E-value=0.16 Score=58.66 Aligned_cols=69 Identities=22% Similarity=0.327 Sum_probs=58.5
Q ss_pred ccccccccCEEEEeCCCCCCChHHHHHHHhhhc-CCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHH
Q 003485 103 SSVRVIQRNLVYIVGLPLNLGDEDLLQRREYFG-QYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQS 179 (816)
Q Consensus 103 anVRVIQrNLVYVvGLP~~IaeEDLLKk~EyFG-QYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqa 179 (816)
.+..+-.+-+|||||||.-++-+||- .+|. -||.|.-|-|-.|.+-+ -++|.|=|||.+...=.+||.+
T Consensus 363 ~sq~lDprrTVFVGgvprpl~A~eLA---~imd~lyGgV~yaGIDtD~k~K-----YPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 363 HNQPIDPRRTVFVGGLPRPLTAEELA---MIMEDLFGGVLYVGIDTDPKLK-----YPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCcccCccceEEecCCCCcchHHHHH---HHHHHhcCceEEEEeccCcccC-----CCCCcceeeecccHHHHHHHhh
Confidence 45567788999999999999999985 7888 89999999998875543 3678899999999999999985
No 138
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=92.89 E-value=0.062 Score=66.30 Aligned_cols=51 Identities=29% Similarity=0.918 Sum_probs=42.7
Q ss_pred CCCCCCcccCCCccCC--CccccC-CCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCc
Q 003485 6 EKTCPLCAEEMDLTDQ--QLKPCK-CGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (816)
Q Consensus 6 d~~CPLC~EelD~tD~--~f~PC~-CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Yd 61 (816)
..+|.+|-+++.++.. .|.-|- |+|.+|+-||..= +.+.+-.||.|+.+|.
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye-----~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYE-----RSEGNQCCPQCNTRYK 68 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchhhhh-----hhcCCccCCccCCchh
Confidence 3689999999866543 688998 9999999999643 4568889999999997
No 139
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=92.88 E-value=0.23 Score=57.11 Aligned_cols=73 Identities=18% Similarity=0.348 Sum_probs=56.1
Q ss_pred CEEEEeCCCCCCChHHHHHHHhhhcCCcceeE-EEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 003485 111 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLK-VSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (816)
Q Consensus 111 NLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~K-IvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~ 189 (816)
-.|=+.|||+.++++||. +||.--=.|.+ |-+..++.+ .+++-|||.|+.+|.|+.|++.- -..+.-|.
T Consensus 104 ~vVRLRGLPfscte~dI~---~FFaGL~Iv~~gi~l~~d~rg------R~tGEAfVqF~sqe~ae~Al~rh-re~iGhRY 173 (510)
T KOG4211|consen 104 GVVRLRGLPFSCTEEDIV---EFFAGLEIVPDGILLPMDQRG------RPTGEAFVQFESQESAEIALGRH-RENIGHRY 173 (510)
T ss_pred ceEEecCCCccCcHHHHH---HHhcCCcccccceeeeccCCC------CcccceEEEecCHHHHHHHHHHH-HHhhccce
Confidence 457789999999999997 99998866665 334455433 36889999999999999999854 35666677
Q ss_pred EEEe
Q 003485 190 LKAC 193 (816)
Q Consensus 190 LRAS 193 (816)
|.|-
T Consensus 174 IEvF 177 (510)
T KOG4211|consen 174 IEVF 177 (510)
T ss_pred EEee
Confidence 7654
No 140
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=92.85 E-value=0.093 Score=55.67 Aligned_cols=64 Identities=14% Similarity=0.307 Sum_probs=51.1
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCcc
Q 003485 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (816)
Q Consensus 110 rNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~L 185 (816)
-.++||.||.+++++++|. .+|..|--...++|- .+. ....|||.|++.|.|..|+..|.|+.|
T Consensus 210 cstlfianl~~~~~ed~l~---~~~~~~~gf~~l~~~-~~~--------g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELK---QLLSRYPGFHILKIR-ARG--------GMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhHhhhccCCCCCHHHHH---HHHHhCCCceEEEEe-cCC--------CcceEeecHHHHHHHHHHHHHhhccee
Confidence 4679999999999877663 799999766655553 222 246899999999999999999999886
No 141
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=92.72 E-value=0.058 Score=66.73 Aligned_cols=50 Identities=24% Similarity=0.885 Sum_probs=42.7
Q ss_pred CCCCCcccCCCccCC--CccccC-CCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCc
Q 003485 7 KTCPLCAEEMDLTDQ--QLKPCK-CGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (816)
Q Consensus 7 ~~CPLC~EelD~tD~--~f~PC~-CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Yd 61 (816)
.+|.+|-+++.+|.. .|.-|- |||-+|+-||.. |+.+.+-.||-|+..|.
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEY-----Er~eG~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEY-----ERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhh-----hhhcCCccCCccCCchh
Confidence 489999999877654 688998 999999999965 34578899999999997
No 142
>PHA02926 zinc finger-like protein; Provisional
Probab=92.38 E-value=0.14 Score=54.12 Aligned_cols=57 Identities=23% Similarity=0.532 Sum_probs=36.7
Q ss_pred CCCCCCCcccCCC----ccCCCcc-ccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCc
Q 003485 5 GEKTCPLCAEEMD----LTDQQLK-PCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (816)
Q Consensus 5 ~d~~CPLC~EelD----~tD~~f~-PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Yd 61 (816)
.|.+|++|+|.+- ..|+.|- .=.|+.-.|+-|...-+...........||-||..+.
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 3689999999862 3455553 3379999777776665532111122356999999664
No 143
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=92.14 E-value=0.46 Score=55.07 Aligned_cols=80 Identities=20% Similarity=0.319 Sum_probs=50.9
Q ss_pred CEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCce---EEEEEeCCHHHHHHHHHHhcCCccCC
Q 003485 111 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTC---SVYITYSKEEEAVRCIQSVHGFVLEG 187 (816)
Q Consensus 111 NLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rg---sAYVTFs~~EDA~rAIqaLNG~~LdG 187 (816)
..|||+|||+.++|+.|. ..|++||.+. |.=...... ....+ +.| ++|+-|+++..-..-|.+..- .-++
T Consensus 260 ~KVFvGGlp~dise~~i~---~~F~~FGs~~-VdWP~k~~~-~~~~p-pkGs~~YvflvFe~E~sV~~Ll~aC~~-~~~~ 332 (520)
T KOG0129|consen 260 RKVFVGGLPWDITEAQIN---ASFGQFGSVK-VDWPGKANS-RGRAP-PKGSYGYVFLVFEDERSVQSLLSACSE-GEGN 332 (520)
T ss_pred cceeecCCCccccHHHHH---hhcccccceE-eecCCCccc-cccCC-CCCcccEEEEEecchHHHHHHHHHHhh-cccc
Confidence 459999999999998886 7999999874 222221111 11122 344 899999998877665555442 2333
Q ss_pred eEEEEeecCC
Q 003485 188 KSLKACFGTT 197 (816)
Q Consensus 188 R~LRASfGTT 197 (816)
-.|+|+-=|-
T Consensus 333 ~yf~vss~~~ 342 (520)
T KOG0129|consen 333 YYFKVSSPTI 342 (520)
T ss_pred eEEEEecCcc
Confidence 4566664433
No 144
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=91.93 E-value=0.21 Score=53.74 Aligned_cols=107 Identities=15% Similarity=0.116 Sum_probs=70.1
Q ss_pred ccccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHh--cC
Q 003485 105 VRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSV--HG 182 (816)
Q Consensus 105 VRVIQrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaL--NG 182 (816)
||--.+--|||++|...+..|.++ +-|.+||.|...||..|..+ ..++-..|.|..+-.|.+|.... .|
T Consensus 26 ~rfa~~a~l~V~nl~~~~sndll~---~~f~~fg~~e~av~~vD~r~------k~t~eg~v~~~~k~~a~~a~rr~~~~g 96 (275)
T KOG0115|consen 26 VRFAMHAELYVVNLMQGASNDLLE---QAFRRFGPIERAVAKVDDRG------KPTREGIVEFAKKPNARKAARRCREGG 96 (275)
T ss_pred EEeeccceEEEEecchhhhhHHHH---HhhhhcCccchheeeecccc------cccccchhhhhcchhHHHHHHHhccCc
Confidence 444455889999999999887665 89999999999888776544 24566799999999999999888 33
Q ss_pred Cc--cCCeEEEEeecCCCccccccCCCCCCCCCCcccccCC
Q 003485 183 FV--LEGKSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVG 221 (816)
Q Consensus 183 ~~--LdGR~LRASfGTTKYCs~FLRg~~C~NpdCmYLHE~g 221 (816)
+- ..|+..-|.=...-||..=+--. |..+.-.|+||.+
T Consensus 97 ~~~~~~~~p~~VeP~eq~~d~~G~~~k-~~~~~~~~~~e~~ 136 (275)
T KOG0115|consen 97 FGGTTGGRPVGVEPMEQPDDNDGGPEK-GGGGGPSGPKERE 136 (275)
T ss_pred cccCCCCCccCCChhhccCCCCcchhh-cCCCCCCCCcccc
Confidence 32 23333333222222333222222 5555555655554
No 145
>PLN02400 cellulose synthase
Probab=91.26 E-value=0.096 Score=64.91 Aligned_cols=50 Identities=24% Similarity=0.916 Sum_probs=42.4
Q ss_pred CCCCCcccCCCccCC--CccccC-CCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCc
Q 003485 7 KTCPLCAEEMDLTDQ--QLKPCK-CGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (816)
Q Consensus 7 ~~CPLC~EelD~tD~--~f~PC~-CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Yd 61 (816)
..|.+|-+++.+|.. .|.-|- |+|-+|+-||.. |+.+.+-.||-|+..|.
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEY-----ERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEY-----ERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhhe-----ecccCCccCcccCCccc
Confidence 389999999866654 688998 999999999965 34568899999999997
No 146
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=91.13 E-value=0.15 Score=40.47 Aligned_cols=42 Identities=24% Similarity=0.710 Sum_probs=27.0
Q ss_pred CCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCC
Q 003485 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPAC 56 (816)
Q Consensus 9 CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPAC 56 (816)
||+|.+.|. .=..-+||+.+|+.|..++.+. .......||-|
T Consensus 1 CpiC~~~~~----~Pv~l~CGH~FC~~Cl~~~~~~--~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK----DPVSLPCGHSFCRSCLERLWKE--PSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S----SEEE-SSSSEEEHHHHHHHHCC--SSSST---SSS
T ss_pred CCccchhhC----CccccCCcCHHHHHHHHHHHHc--cCCcCCCCcCC
Confidence 899999984 3345688999999999998742 11222689987
No 147
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=91.00 E-value=0.65 Score=40.39 Aligned_cols=56 Identities=27% Similarity=0.550 Sum_probs=43.4
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCC----cceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHh
Q 003485 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQY----GKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSV 180 (816)
Q Consensus 108 IQrNLVYVvGLP~~IaeEDLLKk~EyFGQY----GKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaL 180 (816)
++.+.|+|.|+. ++..+|++ .||..| | ..+|.-.-|. ++=|.|.+.+.|.+|+.+|
T Consensus 3 ~rpeavhirGvd-~lsT~dI~---~y~~~y~~~~~-~~~IEWIdDt------------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 3 IRPEAVHIRGVD-ELSTDDIK---AYFSEYFDEEG-PFRIEWIDDT------------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceeceEEEEcCC-CCCHHHHH---HHHHHhcccCC-CceEEEecCC------------cEEEEECCHHHHHHHHHcC
Confidence 567889999985 47788997 899999 4 3356554432 4689999999999999875
No 148
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=90.83 E-value=0.16 Score=55.32 Aligned_cols=46 Identities=26% Similarity=0.715 Sum_probs=40.7
Q ss_pred cCCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCc
Q 003485 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (816)
Q Consensus 4 e~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Yd 61 (816)
.+-.+||.|.+.|.+ ..+-|.=|.-.|-.|--+. ..+||.||.++.
T Consensus 46 ~~lleCPvC~~~l~~---Pi~QC~nGHlaCssC~~~~---------~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSP---PIFQCDNGHLACSSCRTKV---------SNKCPTCRLPIG 91 (299)
T ss_pred hhhccCchhhccCcc---cceecCCCcEehhhhhhhh---------cccCCccccccc
Confidence 345799999999987 8899999999999998765 479999999998
No 149
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.78 E-value=0.2 Score=54.45 Aligned_cols=53 Identities=28% Similarity=0.874 Sum_probs=35.3
Q ss_pred cCCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcccchh
Q 003485 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIV 66 (816)
Q Consensus 4 e~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Ydee~i~ 66 (816)
+....|-||+|.+. |...- +||.- |||--|++-..+ ..-||-||......++.
T Consensus 237 ~a~~kC~LCLe~~~--~pSaT--pCGHi---FCWsCI~~w~~e---k~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 237 EATRKCSLCLENRS--NPSAT--PCGHI---FCWSCILEWCSE---KAECPLCREKFQPSKVI 289 (293)
T ss_pred CCCCceEEEecCCC--CCCcC--cCcch---HHHHHHHHHHcc---ccCCCcccccCCCccee
Confidence 45689999999982 22222 47988 666667664332 23399999988766553
No 150
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=90.75 E-value=0.15 Score=41.00 Aligned_cols=43 Identities=23% Similarity=0.677 Sum_probs=22.3
Q ss_pred CCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCC
Q 003485 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCP 54 (816)
Q Consensus 9 CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCP 54 (816)
||+|.| |+-++..-+--+||+-||+-|..++.... ....-+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~--~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKS--DRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH---S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcC--CCCeeeCc
Confidence 999999 86555554657799999999999997421 11345676
No 151
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=90.71 E-value=0.24 Score=56.36 Aligned_cols=90 Identities=19% Similarity=0.273 Sum_probs=64.9
Q ss_pred ccCccccc--cccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeec---CCccccccCC------CceEEEEEeC
Q 003485 100 QQLSSVRV--IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRT---AAGVIQQFPN------NTCSVYITYS 168 (816)
Q Consensus 100 ~~LanVRV--IQrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd---~~g~~~q~ps------~rgsAYVTFs 168 (816)
..|...+. +|--+|.|-+||..-..|.|+ ++||.+|.|..|+|-+. ..... +.+. .+-.|+|.|.
T Consensus 219 sPlp~~~~eel~srtivaenLP~Dh~~enl~---kiFg~~G~IksIRIckPgaip~d~r-~~~~~~~~~~tk~~AlvEye 294 (484)
T KOG1855|consen 219 SPLPEFDEEELPSRTIVAENLPLDHSYENLS---KIFGTVGSIKSIRICKPGAIPEDVR-GFPKKYFELQTKECALVEYE 294 (484)
T ss_pred CCCCCccccccccceEEEecCCcchHHHHHH---HHhhcccceeeeeecCCCCCCcccc-cCCccchhhhhhhhhhhhhh
Confidence 34555554 378889999999998888887 89999999999999754 11110 1111 2446899999
Q ss_pred CHHHHHHHHHHhcCCccCCeEEEEe
Q 003485 169 KEEEAVRCIQSVHGFVLEGKSLKAC 193 (816)
Q Consensus 169 ~~EDA~rAIqaLNG~~LdGR~LRAS 193 (816)
..+.|.+|.+.|+-...--.-|||-
T Consensus 295 ~~~~A~KA~e~~~~e~~wr~glkvk 319 (484)
T KOG1855|consen 295 EVEAARKARELLNPEQNWRMGLKVK 319 (484)
T ss_pred hhHHHHHHHHhhchhhhhhhcchhh
Confidence 9999999999997765443445544
No 152
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.54 E-value=0.16 Score=56.47 Aligned_cols=53 Identities=26% Similarity=0.613 Sum_probs=43.1
Q ss_pred ccCCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCccc
Q 003485 3 DEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKE 63 (816)
Q Consensus 3 de~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Ydee 63 (816)
||+++.|-+|.+.+.- ...+ ||+.|||.-|--|++.++ +..-||-||.+.++-
T Consensus 58 DEen~~C~ICA~~~TY--s~~~--PC~H~~CH~Ca~RlRALY----~~K~C~~CrTE~e~V 110 (493)
T COG5236 58 DEENMNCQICAGSTTY--SARY--PCGHQICHACAVRLRALY----MQKGCPLCRTETEAV 110 (493)
T ss_pred ccccceeEEecCCceE--EEec--cCCchHHHHHHHHHHHHH----hccCCCccccccceE
Confidence 6778899999999843 3334 579999999999999865 577899999988754
No 153
>PF04641 Rtf2: Rtf2 RING-finger
Probab=90.22 E-value=0.34 Score=51.26 Aligned_cols=64 Identities=27% Similarity=0.659 Sum_probs=42.8
Q ss_pred cCCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcccchhcccchhHH
Q 003485 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGMAAKCER 74 (816)
Q Consensus 4 e~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Ydee~i~~~~~~~ee 74 (816)
+..-.||++..+|.-.=.-.+.-+|| |.||+.-|.++ + ....||.|-.+|.++.|+......++
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG---~V~s~~alke~--k--~~~~Cp~c~~~f~~~DiI~Lnp~~ee 174 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCG---CVFSEKALKEL--K--KSKKCPVCGKPFTEEDIIPLNPPEEE 174 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCC---CEeeHHHHHhh--c--ccccccccCCccccCCEEEecCCccH
Confidence 34568999999994332333555677 45666666543 2 35679999999998887765554443
No 154
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=89.78 E-value=0.47 Score=48.53 Aligned_cols=57 Identities=26% Similarity=0.461 Sum_probs=42.9
Q ss_pred HhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhc--CCccCCeEEEEeecCCC
Q 003485 131 REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVH--GFVLEGKSLKACFGTTK 198 (816)
Q Consensus 131 ~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLN--G~~LdGR~LRASfGTTK 198 (816)
.++|.+|+.+..+.+.+.- ..+-|.|.+.++|.+|.+.|+ |..+.|..||+-||..-
T Consensus 13 ~~l~~~~~~~~~~~~L~sF-----------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 13 EELFSTYDPPVQFSPLKSF-----------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp HHHHHTT-SS-EEEEETTT-----------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred HHHHHhcCCceEEEEcCCC-----------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 4899999999999887532 247899999999999999999 99999999999999443
No 155
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=89.66 E-value=0.96 Score=41.84 Aligned_cols=56 Identities=14% Similarity=0.420 Sum_probs=43.3
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhc
Q 003485 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVH 181 (816)
Q Consensus 110 rNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLN 181 (816)
|.-||-...|......||+ ++|..||.|.=-.|+- .+|||...+.+.|..|+..++
T Consensus 8 RdHVFhltFPkeWK~~DI~---qlFspfG~I~VsWi~d-------------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLTFPKEWKTSDIY---QLFSPFGQIYVSWIND-------------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE--TT--HHHHH---HHCCCCCCEEEEEECT-------------TEEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEeCchHhhhhhHH---HHhccCCcEEEEEEcC-------------CcEEEEeecHHHHHHHHHHhc
Confidence 5567777799999999997 9999999996555541 269999999999999999886
No 156
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=88.97 E-value=0.44 Score=43.82 Aligned_cols=54 Identities=26% Similarity=0.664 Sum_probs=32.2
Q ss_pred CCCCCCCcccCCCcc---------CCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCc
Q 003485 5 GEKTCPLCAEEMDLT---------DQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (816)
Q Consensus 5 ~d~~CPLC~EelD~t---------D~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Yd 61 (816)
+|+.|++|..+||.+ |-.+.-+.|+..+-.-|..+=++ ....+++||=||+++.
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~---~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLS---TQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHc---cccCCCCCCCcCCeee
Confidence 467788888887732 22233345666643434333332 2345799999999764
No 157
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=88.69 E-value=1 Score=51.12 Aligned_cols=58 Identities=26% Similarity=0.430 Sum_probs=44.8
Q ss_pred EEEeCCCCCCChHHHHHHHhhhcCCcce----eEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHH
Q 003485 113 VYIVGLPLNLGDEDLLQRREYFGQYGKV----LKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQS 179 (816)
Q Consensus 113 VYVvGLP~~IaeEDLLKk~EyFGQYGKI----~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqa 179 (816)
|-..|||+..++.|++ +||++--.| .+|-.++...+ +++|-|||.|..+|+|..|++.
T Consensus 164 vRmRGLPfdat~~dVv---~FF~~~cpv~~g~egvLFV~rpdg------rpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 164 VRMRGLPFDATALDVV---EFFGPPCPVTGGTEGVLFVTRPDG------RPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred EEecCCCCCcchHHHH---HhcCCCCcccCCccceEEEECCCC------CcccceEEEecCHHHHHHHHHH
Confidence 4457999999999998 999965444 35555554443 4678999999999999999864
No 158
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=86.10 E-value=0.8 Score=52.38 Aligned_cols=75 Identities=25% Similarity=0.349 Sum_probs=59.3
Q ss_pred CEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCc-cCCeE
Q 003485 111 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFV-LEGKS 189 (816)
Q Consensus 111 NLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~-LdGR~ 189 (816)
|.+|+++|.+.++..||- ..||.- ++-.+.. .--..++|||.+.++.-|.+||+.++|.+ +.|++
T Consensus 2 nklyignL~p~~~psdl~---svfg~a----k~~~~g~-------fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr 67 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLE---SVFGDA----KIPGSGQ-------FLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKR 67 (584)
T ss_pred CcccccccCCCCChHHHH---HHhccc----cCCCCcc-------eeeecceeeccCCchhhhhhhHHhhchhhhhcCce
Confidence 678999999999999985 788865 2222111 11235789999999999999999999975 89999
Q ss_pred EEEeecCCCc
Q 003485 190 LKACFGTTKY 199 (816)
Q Consensus 190 LRASfGTTKY 199 (816)
+.+.+-..|-
T Consensus 68 ~e~~~sv~kk 77 (584)
T KOG2193|consen 68 QEVEHSVPKK 77 (584)
T ss_pred eeccchhhHH
Confidence 9999887764
No 159
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=85.34 E-value=0.54 Score=56.25 Aligned_cols=75 Identities=9% Similarity=0.131 Sum_probs=61.2
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeE-EEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 003485 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLK-VSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (816)
Q Consensus 110 rNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~K-IvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR 188 (816)
.+.|||-+||....+.++. ++|..--.|.+ |.|.+-... ..++-|||.|.+++++..|..--.-++++-|
T Consensus 434 g~~lyv~~lP~~t~~~~~v---~~f~~~~~Ved~I~lt~~P~~------~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r 504 (944)
T KOG4307|consen 434 GGALYVFQLPVMTPIVPPV---NKFMGAAAVEDFIELTRLPTD------LLRPAAFVAFIHPTAPLTASSVKTKFYPGHR 504 (944)
T ss_pred cceEEeccCCccccccchh---hhhhhhhhhhheeEeccCCcc------cccchhhheeccccccchhhhcccccccCce
Confidence 3789999999999888888 78888778888 777554322 2356799999999999999988888888889
Q ss_pred EEEEe
Q 003485 189 SLKAC 193 (816)
Q Consensus 189 ~LRAS 193 (816)
.|||.
T Consensus 505 ~irv~ 509 (944)
T KOG4307|consen 505 IIRVD 509 (944)
T ss_pred EEEee
Confidence 99975
No 160
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=84.87 E-value=1.3 Score=44.73 Aligned_cols=70 Identities=20% Similarity=0.264 Sum_probs=42.7
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcC-Cccee---EEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCcc
Q 003485 110 RNLVYIVGLPLNLGDEDLLQRREYFGQ-YGKVL---KVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (816)
Q Consensus 110 rNLVYVvGLP~~IaeEDLLKk~EyFGQ-YGKI~---KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~L 185 (816)
+..|-|..||+.+++++++ +.+.. +|... -+.-....... .+..-..|||.|.+.+++..=+..+||..+
T Consensus 7 ~~KvVIR~LPP~LteeeF~---~~i~~~l~~~~~w~y~~g~~~~~~~---~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFW---EQISPWLPDEWDWYYFQGKYGKKSF---KPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp --EEEEEEE-TTS-HHHHC---CCCSS--SSE---EEEEEEES-SSS---TTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred CceEEEeCCCCCCCHHHHH---HHhhhhcccccceEEEecCCCCccC---CCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 4568889999999999987 65555 55552 22211111111 111223699999999999999999999775
No 161
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=84.65 E-value=0.45 Score=54.79 Aligned_cols=71 Identities=21% Similarity=0.377 Sum_probs=51.2
Q ss_pred CEEEEeCCCCCCCh-HHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 003485 111 NLVYIVGLPLNLGD-EDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (816)
Q Consensus 111 NLVYVvGLP~~Iae-EDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~ 189 (816)
.++-+--.|+.+.. ++|+ ..|.+||+|..|.|... .-.|-|||.+..||-+|-. ..|..|+||.
T Consensus 373 s~l~lek~~~glnt~a~ln---~hfA~fG~i~n~qv~~~-----------~~~a~vTF~t~aeag~a~~-s~~avlnnr~ 437 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLN---PHFAQFGEIENIQVDYS-----------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRF 437 (526)
T ss_pred chhhhhccCCCCchHhhhh---hhhhhcCccccccccCc-----------hhhheeeeeccccccchhc-cccceecCce
Confidence 33333334444332 3444 89999999999998643 1247999999999977754 7899999999
Q ss_pred EEEeecC
Q 003485 190 LKACFGT 196 (816)
Q Consensus 190 LRASfGT 196 (816)
||+-|-.
T Consensus 438 iKl~whn 444 (526)
T KOG2135|consen 438 IKLFWHN 444 (526)
T ss_pred eEEEEec
Confidence 9998743
No 162
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=84.40 E-value=0.45 Score=52.15 Aligned_cols=47 Identities=28% Similarity=0.829 Sum_probs=36.8
Q ss_pred CCCCCcccCCCccCCCcccc--CCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcccch
Q 003485 7 KTCPLCAEEMDLTDQQLKPC--KCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (816)
Q Consensus 7 ~~CPLC~EelD~tD~~f~PC--~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Ydee~i 65 (816)
.-|-+|-+-|.+ || +||.-+|-||-.+-+ ..+..||+||.+.-|...
T Consensus 26 lrC~IC~~~i~i------p~~TtCgHtFCslCIR~hL------~~qp~CP~Cr~~~~esrl 74 (391)
T COG5432 26 LRCRICDCRISI------PCETTCGHTFCSLCIRRHL------GTQPFCPVCREDPCESRL 74 (391)
T ss_pred HHhhhhhheeec------ceecccccchhHHHHHHHh------cCCCCCccccccHHhhhc
Confidence 468999888865 77 499999999987654 368899999997766543
No 163
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=83.99 E-value=1.3 Score=48.57 Aligned_cols=54 Identities=26% Similarity=0.584 Sum_probs=40.3
Q ss_pred CCCCcccCC-CccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcccchh
Q 003485 8 TCPLCAEEM-DLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIV 66 (816)
Q Consensus 8 ~CPLC~Eel-D~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Ydee~i~ 66 (816)
.||.|.-.- =.-|.-++-=+|||.+|--|.++|.. ...+.||.|-+..-..++.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~-----~g~~~CpeC~~iLRk~nfr 56 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFS-----LGPAQCPECMVILRKNNFR 56 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHh-----cCCCCCCcccchhhhcccc
Confidence 599996543 12234444559999999999999964 5789999999987666653
No 164
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=83.64 E-value=0.58 Score=33.78 Aligned_cols=20 Identities=35% Similarity=0.795 Sum_probs=18.8
Q ss_pred ccccccCCCCCCCCCCcccc
Q 003485 199 YCHAWLRNVPCTNPDCLYLH 218 (816)
Q Consensus 199 YCs~FLRg~~C~NpdCmYLH 218 (816)
-|.+.|+|..|++++|.|.|
T Consensus 2 lC~yEl~Gg~Cnd~~C~~QH 21 (23)
T PF10650_consen 2 LCPYELTGGVCNDPDCEFQH 21 (23)
T ss_pred CCccccCCCeeCCCCCCccc
Confidence 48899999999999999999
No 165
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=83.17 E-value=0.49 Score=57.47 Aligned_cols=79 Identities=20% Similarity=0.217 Sum_probs=67.1
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 003485 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (816)
Q Consensus 108 IQrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdG 187 (816)
.-+-.|+|.|+|+.-++|++. .+|..+|.++++.+...+.+ .+.|-|||-|.++.+|.+|...+++..+.-
T Consensus 734 ~gK~~v~i~g~pf~gt~e~~k---~l~~~~gn~~~~~~vt~r~g------kpkg~a~v~y~~ea~~s~~~~s~d~~~~rE 804 (881)
T KOG0128|consen 734 FGKISVAISGPPFQGTKEELK---SLASKTGNVTSLRLVTVRAG------KPKGKARVDYNTEADASRKVASVDVAGKRE 804 (881)
T ss_pred hhhhhhheeCCCCCCchHHHH---hhccccCCccccchhhhhcc------ccccceeccCCCcchhhhhcccchhhhhhh
Confidence 347889999999999888874 89999999999987766655 367899999999999999999999988877
Q ss_pred eEEEEeec
Q 003485 188 KSLKACFG 195 (816)
Q Consensus 188 R~LRASfG 195 (816)
+.+.+..+
T Consensus 805 ~~~~v~vs 812 (881)
T KOG0128|consen 805 NNGEVQVS 812 (881)
T ss_pred cCcccccc
Confidence 77776654
No 166
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=82.87 E-value=0.54 Score=46.98 Aligned_cols=28 Identities=39% Similarity=1.055 Sum_probs=23.5
Q ss_pred cCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcc
Q 003485 26 CKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (816)
Q Consensus 26 C~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Yde 62 (816)
|+| -++|.-|...-. ..+||+|+.||=.
T Consensus 2 ~kc-t~tC~ic~e~~~--------KYKCpkC~vPYCS 29 (157)
T KOG2857|consen 2 CKC-TTTCVICLESEI--------KYKCPKCSVPYCS 29 (157)
T ss_pred Ccc-eeeehhhhcchh--------hccCCCCCCcccc
Confidence 888 999999988542 5899999999953
No 167
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.63 E-value=0.88 Score=49.23 Aligned_cols=47 Identities=30% Similarity=0.598 Sum_probs=30.6
Q ss_pred cCCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCC
Q 003485 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRS 58 (816)
Q Consensus 4 e~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr 58 (816)
+.+..|+||+|++.. +-==+||.-+|++|.--... + ..-+.||-||+
T Consensus 213 ~~d~kC~lC~e~~~~----ps~t~CgHlFC~~Cl~~~~t---~-~k~~~CplCRa 259 (271)
T COG5574 213 LADYKCFLCLEEPEV----PSCTPCGHLFCLSCLLISWT---K-KKYEFCPLCRA 259 (271)
T ss_pred ccccceeeeecccCC----cccccccchhhHHHHHHHHH---h-hccccCchhhh
Confidence 456789999999953 22234899866666544221 1 23467999998
No 168
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=82.40 E-value=0.55 Score=52.41 Aligned_cols=50 Identities=20% Similarity=0.668 Sum_probs=40.0
Q ss_pred CCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcccch
Q 003485 6 EKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (816)
Q Consensus 6 d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Ydee~i 65 (816)
-.-|-+|.|-|.+ .-+-| ||.-+|-||-...+. ...-||+|+.++.|...
T Consensus 23 lLRC~IC~eyf~i--p~itp--CsHtfCSlCIR~~L~------~~p~CP~C~~~~~Es~L 72 (442)
T KOG0287|consen 23 LLRCGICFEYFNI--PMITP--CSHTFCSLCIRKFLS------YKPQCPTCCVTVTESDL 72 (442)
T ss_pred HHHHhHHHHHhcC--ceecc--ccchHHHHHHHHHhc------cCCCCCceecccchhhh
Confidence 3579999999976 34455 999999999887763 57899999998887654
No 169
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=82.34 E-value=1.9 Score=37.83 Aligned_cols=29 Identities=24% Similarity=0.545 Sum_probs=26.0
Q ss_pred EEEEeCCHHHHHHHHHHhcCCccCCeEEE
Q 003485 163 VYITYSKEEEAVRCIQSVHGFVLEGKSLK 191 (816)
Q Consensus 163 AYVTFs~~EDA~rAIqaLNG~~LdGR~LR 191 (816)
-||.|.+.+||++|..+.||..+.+-.|.
T Consensus 36 fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 36 FYIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred EEEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 49999999999999999999998776664
No 170
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=81.74 E-value=1.4 Score=49.99 Aligned_cols=75 Identities=11% Similarity=0.298 Sum_probs=53.2
Q ss_pred EEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEEE
Q 003485 112 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLK 191 (816)
Q Consensus 112 LVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~LR 191 (816)
.|.|.||.+.++.+.+. .+||-.|+|..+.+.-+-... ..+...-.+||-|.+...+..|- .|-++++-|+.|-
T Consensus 9 vIqvanispsat~dqm~---tlFg~lGkI~elrlyp~~~d~--~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdrali 82 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQ---TLFGNLGKIPELRLYPNVDDS--KIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALI 82 (479)
T ss_pred eeeecccCchhhHHHHH---HHHhhccccccccccCCCCCc--cCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEE
Confidence 35699999999998884 899999999999986432111 12223446899999988777664 4666666566554
Q ss_pred E
Q 003485 192 A 192 (816)
Q Consensus 192 A 192 (816)
|
T Consensus 83 v 83 (479)
T KOG4676|consen 83 V 83 (479)
T ss_pred E
Confidence 3
No 171
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=81.62 E-value=0.73 Score=40.04 Aligned_cols=52 Identities=21% Similarity=0.372 Sum_probs=35.3
Q ss_pred CCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcccchh
Q 003485 6 EKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIV 66 (816)
Q Consensus 6 d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Ydee~i~ 66 (816)
+-.||||.+.| +|--.. +||+-+|+-|+.+-+. ..++.||-||++...+.+.
T Consensus 4 ~f~CpIt~~lM--~dPVi~--~~G~tyer~~I~~~l~-----~~~~~~P~t~~~l~~~~l~ 55 (73)
T PF04564_consen 4 EFLCPITGELM--RDPVIL--PSGHTYERSAIERWLE-----QNGGTDPFTRQPLSESDLI 55 (73)
T ss_dssp GGB-TTTSSB---SSEEEE--TTSEEEEHHHHHHHHC-----TTSSB-TTT-SB-SGGGSE
T ss_pred ccCCcCcCcHh--hCceeC--CcCCEEcHHHHHHHHH-----cCCCCCCCCCCcCCcccce
Confidence 46899999999 455554 5679988888887753 2479999999998877553
No 172
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=81.56 E-value=1 Score=50.85 Aligned_cols=50 Identities=30% Similarity=0.750 Sum_probs=37.2
Q ss_pred CCCCCCCcccCCCccC---------CCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCC
Q 003485 5 GEKTCPLCAEEMDLTD---------QQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPY 60 (816)
Q Consensus 5 ~d~~CPLC~EelD~tD---------~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Y 60 (816)
+|..|.+||+||=-+| ..-|--+||.-.=+-|...-+| -+--||-||+|.
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~E------RqQTCPICr~p~ 344 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLE------RQQTCPICRRPV 344 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHH------hccCCCcccCcc
Confidence 5789999999974444 3335578999877788877765 245799999973
No 173
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.08 E-value=1.3 Score=51.56 Aligned_cols=52 Identities=25% Similarity=0.627 Sum_probs=36.6
Q ss_pred CCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcc
Q 003485 6 EKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (816)
Q Consensus 6 d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Yde 62 (816)
+..||+|.|+-.. .... -||.-.|.-|.=+..... +-..-+.||=||.-..-
T Consensus 186 ~~~CPICL~~~~~---p~~t-~CGHiFC~~CiLqy~~~s-~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSV---PVRT-NCGHIFCGPCILQYWNYS-AIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCc---cccc-ccCceeeHHHHHHHHhhh-cccCCccCCchhhhccc
Confidence 6789999999854 1111 199997777776666544 44567899999995443
No 174
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.43 E-value=0.65 Score=40.10 Aligned_cols=47 Identities=30% Similarity=0.724 Sum_probs=33.0
Q ss_pred CCCCCCcccCCCccCCCccccCCCch-hhhhhHhHhHHhhhhcccCCCCCCCCCCCc
Q 003485 6 EKTCPLCAEEMDLTDQQLKPCKCGYE-ICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (816)
Q Consensus 6 d~~CPLC~EelD~tD~~f~PC~CGYQ-IC~fC~h~I~~~~~K~~~~grCPACRr~Yd 61 (816)
+.+|-+|+|-- .|..++.|. .- +|--|--++. ....|.||-||+|..
T Consensus 7 ~dECTICye~p--vdsVlYtCG--HMCmCy~Cg~rl~-----~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHP--VDSVLYTCG--HMCMCYACGLRLK-----KALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCc--chHHHHHcc--hHHhHHHHHHHHH-----HccCCcCcchhhHHH
Confidence 47899999964 677888764 32 4445555553 347999999999653
No 175
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.20 E-value=0.5 Score=52.84 Aligned_cols=51 Identities=20% Similarity=0.560 Sum_probs=36.5
Q ss_pred CCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCccc
Q 003485 5 GEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKE 63 (816)
Q Consensus 5 ~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Ydee 63 (816)
.+..||+|.+-|.. ..-.=.|+.+||.-|.-.-+. ..+.-||.||+-.+..
T Consensus 42 ~~v~c~icl~llk~---tmttkeClhrfc~~ci~~a~r-----~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 42 IQVICPICLSLLKK---TMTTKECLHRFCFDCIWKALR-----SGNNECPTCRKKLVSK 92 (381)
T ss_pred hhhccHHHHHHHHh---hcccHHHHHHHHHHHHHHHHH-----hcCCCCchHHhhcccc
Confidence 35789999988754 222336999988888765542 3678899999976543
No 176
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.01 E-value=1.2 Score=51.87 Aligned_cols=52 Identities=23% Similarity=0.597 Sum_probs=38.3
Q ss_pred CCCCCCCcccCCCccCCCccc--cCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCccc
Q 003485 5 GEKTCPLCAEEMDLTDQQLKP--CKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKE 63 (816)
Q Consensus 5 ~d~~CPLC~EelD~tD~~f~P--C~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Ydee 63 (816)
.+..|++|.|+|-.-+ +..| -+||+..|..|.-.-.+ ..--||-||..+...
T Consensus 290 ~~~~C~IC~e~l~~~~-~~~~~rL~C~Hifh~~CL~~W~e------r~qtCP~CR~~~~~~ 343 (543)
T KOG0802|consen 290 SDELCIICLEELHSGH-NITPKRLPCGHIFHDSCLRSWFE------RQQTCPTCRTVLYDY 343 (543)
T ss_pred cCCeeeeechhhcccc-ccccceeecccchHHHHHHHHHH------HhCcCCcchhhhhcc
Confidence 4789999999995332 2333 46999999999887765 257899999954433
No 177
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=77.84 E-value=1.9 Score=37.81 Aligned_cols=47 Identities=21% Similarity=0.622 Sum_probs=29.3
Q ss_pred CCCCCCCcccCCCcc---------CCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCC
Q 003485 5 GEKTCPLCAEEMDLT---------DQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACR 57 (816)
Q Consensus 5 ~d~~CPLC~EelD~t---------D~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACR 57 (816)
.++.|++|.++|+.. +..+.-=+||..+..-|..+-++ .+..||-||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~------~~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLK------QNNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHT------TSSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHh------cCCcCCCCC
Confidence 455699999999322 11222125899877777766653 345999998
No 178
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.71 E-value=1.1 Score=50.01 Aligned_cols=48 Identities=33% Similarity=0.899 Sum_probs=38.6
Q ss_pred cCCCCCCCcccCCCccCCCccccC--CCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcc
Q 003485 4 EGEKTCPLCAEEMDLTDQQLKPCK--CGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (816)
Q Consensus 4 e~d~~CPLC~EelD~tD~~f~PC~--CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Yde 62 (816)
|.-++|=+|+-+. .|....||. | +|.-|-.-++ -+..+||=||++..+
T Consensus 288 ~~gkeCVIClse~--rdt~vLPCRHLC---LCs~Ca~~Lr------~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSES--RDTVVLPCRHLC---LCSGCAKSLR------YQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCC--cceEEecchhhe---hhHhHHHHHH------HhhcCCCccccchHh
Confidence 3358999999986 888999997 6 6788888876 246899999997654
No 179
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=74.22 E-value=1.1 Score=34.01 Aligned_cols=26 Identities=42% Similarity=0.925 Sum_probs=15.7
Q ss_pred CCCCCcccCCCccCCCccccC-CCchh
Q 003485 7 KTCPLCAEEMDLTDQQLKPCK-CGYEI 32 (816)
Q Consensus 7 ~~CPLC~EelD~tD~~f~PC~-CGYQI 32 (816)
..||+|-.+....|...+-|+ ||+|+
T Consensus 3 p~Cp~C~se~~y~D~~~~vCp~C~~ew 29 (30)
T PF08274_consen 3 PKCPLCGSEYTYEDGELLVCPECGHEW 29 (30)
T ss_dssp ---TTT-----EE-SSSEEETTTTEEE
T ss_pred CCCCCCCCcceeccCCEEeCCcccccC
Confidence 579999999999999999999 99984
No 180
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=73.98 E-value=4.1 Score=45.19 Aligned_cols=43 Identities=33% Similarity=0.875 Sum_probs=30.7
Q ss_pred CCCCCcccCCCccCCCcc-ccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCC
Q 003485 7 KTCPLCAEEMDLTDQQLK-PCKCGYEICVWCWHHIMDMAEKEETEGRCPACRS 58 (816)
Q Consensus 7 ~~CPLC~EelD~tD~~f~-PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr 58 (816)
..||||--.|-- ..+ || ||.-+|--|....+ -+.+..||+|.+
T Consensus 275 LkCplc~~Llrn---p~kT~c-C~~~fc~eci~~al-----~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRN---PMKTPC-CGHTFCDECIGTAL-----LDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhC---cccCcc-ccchHHHHHHhhhh-----hhccccCCCccc
Confidence 689999876632 111 33 89998888887543 246899999988
No 181
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=73.80 E-value=15 Score=37.39 Aligned_cols=75 Identities=11% Similarity=0.213 Sum_probs=54.3
Q ss_pred ccccCEEEEeCCCCCCChHHHHHH-HhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCcc
Q 003485 107 VIQRNLVYIVGLPLNLGDEDLLQR-REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (816)
Q Consensus 107 VIQrNLVYVvGLP~~IaeEDLLKk-~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~L 185 (816)
-....+|.|.=|..++...+-|++ -...+.||.|..|.+- .+-+|-|+|.+...|-+|+.+... ..
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c------------GrqsavVvF~d~~SAC~Av~Af~s-~~ 149 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC------------GRQSAVVVFKDITSACKAVSAFQS-RA 149 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec------------CCceEEEEehhhHHHHHHHHhhcC-CC
Confidence 344566777776666543332333 4678999999998763 234799999999999999999875 66
Q ss_pred CCeEEEEee
Q 003485 186 EGKSLKACF 194 (816)
Q Consensus 186 dGR~LRASf 194 (816)
-|..++++|
T Consensus 150 pgtm~qCsW 158 (166)
T PF15023_consen 150 PGTMFQCSW 158 (166)
T ss_pred CCceEEeec
Confidence 788888876
No 182
>KOG2923 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.18 E-value=1.5 Score=38.74 Aligned_cols=33 Identities=30% Similarity=0.743 Sum_probs=20.2
Q ss_pred CCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCC
Q 003485 21 QQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRS 58 (816)
Q Consensus 21 ~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr 58 (816)
.-++||+||=. |.--++..+..+.-.+||.|--
T Consensus 20 ~y~yPCpCGDr-----f~It~edL~~ge~Va~CpsCSL 52 (67)
T KOG2923|consen 20 TYYYPCPCGDR-----FQITLEDLENGEDVARCPSCSL 52 (67)
T ss_pred eEEcCCCCCCe-----eeecHHHHhCCCeeecCCCceE
Confidence 34699999855 1112233334456689999965
No 183
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=73.05 E-value=0.5 Score=57.38 Aligned_cols=69 Identities=17% Similarity=0.235 Sum_probs=54.3
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC
Q 003485 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (816)
Q Consensus 110 rNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~Ld 186 (816)
-+.+||.+|++...++||- +.|+.||-|..|.|......+ ..+|.|||.|..+++|.+||...++..++
T Consensus 667 ~~~~fvsnl~~~~~~~dl~---~~~~~~~~~e~vqi~~h~n~~-----~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLS---ERFSPSGTIEVVQIVIHKNEK-----RFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHhhcchhhcCchhh---hhcCccchhhhHHHHHHhhcc-----ccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 3678999999999999985 899999999877664211111 24688999999999999999987775554
No 184
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=71.42 E-value=0.57 Score=41.74 Aligned_cols=42 Identities=33% Similarity=0.775 Sum_probs=26.9
Q ss_pred CCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcc
Q 003485 6 EKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (816)
Q Consensus 6 d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Yde 62 (816)
|..||.|-.+|+.+. |--.|..|-.++. ..++||.|..+...
T Consensus 1 e~~CP~C~~~L~~~~--------~~~~C~~C~~~~~-------~~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 1 ENTCPKCQQELEWQG--------GHYHCEACQKDYK-------KEAFCPDCGQPLEV 42 (70)
T ss_dssp --B-SSS-SBEEEET--------TEEEETTT--EEE-------EEEE-TTT-SB-EE
T ss_pred CCcCCCCCCccEEeC--------CEEECccccccce-------ecccCCCcccHHHH
Confidence 458999999999877 5567888988874 57999999998764
No 185
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=70.88 E-value=6.2 Score=46.81 Aligned_cols=84 Identities=18% Similarity=0.302 Sum_probs=57.5
Q ss_pred ccccccc-CEEEEeCCCCCCChHHHHHHHhhhcC--CcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHh
Q 003485 104 SVRVIQR-NLVYIVGLPLNLGDEDLLQRREYFGQ--YGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSV 180 (816)
Q Consensus 104 nVRVIQr-NLVYVvGLP~~IaeEDLLKk~EyFGQ--YGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaL 180 (816)
.||-++| ..|.+.-||.....|++. -+|.- .=+++......+ . .-||||++.+||+.|.+.|
T Consensus 168 kVrp~~kRcIvilREIpettp~e~Vk---~lf~~encPk~iscefa~N----------~--nWyITfesd~DAQqAykyl 232 (684)
T KOG2591|consen 168 KVRPNHKRCIVILREIPETTPIEVVK---ALFKGENCPKVISCEFAHN----------D--NWYITFESDTDAQQAYKYL 232 (684)
T ss_pred ccccCcceeEEEEeecCCCChHHHHH---HHhccCCCCCceeeeeeec----------C--ceEEEeecchhHHHHHHHH
Confidence 3565544 456667788888777764 57753 445666555322 1 3599999999999999998
Q ss_pred cCC--ccCCeEEEEeecCCCccccccC
Q 003485 181 HGF--VLEGKSLKACFGTTKYCHAWLR 205 (816)
Q Consensus 181 NG~--~LdGR~LRASfGTTKYCs~FLR 205 (816)
-.. .|-|+.|.|.+-+ |..|+-
T Consensus 233 reevk~fqgKpImARIKa---intf~p 256 (684)
T KOG2591|consen 233 REEVKTFQGKPIMARIKA---INTFFP 256 (684)
T ss_pred HHHHHhhcCcchhhhhhh---hhcccC
Confidence 764 4889999865544 766653
No 186
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=70.63 E-value=1.1 Score=55.05 Aligned_cols=79 Identities=11% Similarity=0.227 Sum_probs=65.1
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 003485 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (816)
Q Consensus 110 rNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~ 189 (816)
..+||+++|...+++-+|. ..|+.||+|.+|.|.+.+.+ ....+|||.|.+-.-|-+|...+-|..|.--.
T Consensus 372 trTLf~Gnl~~kl~eseiR---~af~e~gkve~VDiKtP~~~------~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~ 442 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIR---PAFDESGKVEEVDIKTPHIK------TESAYAFVSLLNTDMTPSAKFEESGPLIGNGT 442 (975)
T ss_pred hhhhhhcCcccchhhhhhh---hhhhhhccccccccccCCCC------cccchhhhhhhccccCcccchhhcCCccccCc
Confidence 3679999999999998885 79999999999999765433 12347899999999999999999998887667
Q ss_pred EEEeecCC
Q 003485 190 LKACFGTT 197 (816)
Q Consensus 190 LRASfGTT 197 (816)
+++-||.-
T Consensus 443 ~r~glG~~ 450 (975)
T KOG0112|consen 443 HRIGLGQP 450 (975)
T ss_pred cccccccc
Confidence 77777743
No 187
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=69.73 E-value=1.8 Score=49.24 Aligned_cols=50 Identities=28% Similarity=0.715 Sum_probs=44.4
Q ss_pred CCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCC
Q 003485 5 GEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRS 58 (816)
Q Consensus 5 ~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr 58 (816)
-+..|-+|-|.+-+.|.++.--+|...+=.-|.+-|++ .+..-.||+||+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~----~n~~rsCP~Crk 413 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILE----NNGTRSCPNCRK 413 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHH----hCCCCCCccHHH
Confidence 35789999999999999999999999999999999985 357788999994
No 188
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.10 E-value=3.6 Score=43.92 Aligned_cols=57 Identities=23% Similarity=0.571 Sum_probs=40.2
Q ss_pred ccCCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcccchh
Q 003485 3 DEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIV 66 (816)
Q Consensus 3 de~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Ydee~i~ 66 (816)
|...-+|.||.+.- .| .... -||.-.|+=|.|+-+... .....||-|+...+.++++
T Consensus 44 ~~~~FdCNICLd~a--kd-PVvT-lCGHLFCWpClyqWl~~~---~~~~~cPVCK~~Vs~~~vv 100 (230)
T KOG0823|consen 44 DGGFFDCNICLDLA--KD-PVVT-LCGHLFCWPCLYQWLQTR---PNSKECPVCKAEVSIDTVV 100 (230)
T ss_pred CCCceeeeeecccc--CC-CEEe-ecccceehHHHHHHHhhc---CCCeeCCccccccccceEE
Confidence 34456899997654 22 2233 289999999999877532 2345689999999988875
No 189
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=64.23 E-value=4.8 Score=45.39 Aligned_cols=52 Identities=21% Similarity=0.691 Sum_probs=40.5
Q ss_pred cCCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcccc
Q 003485 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEK 64 (816)
Q Consensus 4 e~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Ydee~ 64 (816)
+++..||+|+-.+-. .+.+=.||...|.+|...... ....||+||++-.-+.
T Consensus 19 ~~~l~C~~C~~vl~~---p~~~~~cgh~fC~~C~~~~~~------~~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 19 DENLLCPICMSVLRD---PVQTTTCGHRFCAGCLLESLS------NHQKCPVCRQELTQAE 70 (391)
T ss_pred cccccCccccccccC---CCCCCCCCCcccccccchhhc------cCcCCcccccccchhh
Confidence 456899999999843 444468999999999998853 2789999999765443
No 190
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=63.74 E-value=4.2 Score=27.73 Aligned_cols=11 Identities=45% Similarity=1.081 Sum_probs=10.1
Q ss_pred CCCCC-CCcccc
Q 003485 208 PCTNP-DCLYLH 218 (816)
Q Consensus 208 ~C~Np-dCmYLH 218 (816)
.|.|. +|.|.|
T Consensus 7 ~C~~~~~C~f~H 18 (19)
T PF14608_consen 7 NCTNGDNCPFSH 18 (19)
T ss_pred CCCCCCcCccCC
Confidence 39998 999999
No 191
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=62.73 E-value=4.4 Score=49.81 Aligned_cols=83 Identities=20% Similarity=0.304 Sum_probs=64.5
Q ss_pred cCccccccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHh
Q 003485 101 QLSSVRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSV 180 (816)
Q Consensus 101 ~LanVRVIQrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaL 180 (816)
.+.+|.-.|-. .|+-+.+-..+--.| .-+|.+||+|..++..|+-. -|-|.|...|.|..|..++
T Consensus 290 sisnv~plqp~-~~~~nn~v~~tSssL---~~l~s~yg~v~s~wtlr~~N-----------~alvs~~s~~sai~a~dAl 354 (1007)
T KOG4574|consen 290 SISNVFPLQPK-QSLENNAVNLTSSSL---ATLCSDYGSVASAWTLRDLN-----------MALVSFSSVESAILALDAL 354 (1007)
T ss_pred eecccccCcch-hhhhcccccchHHHH---HHHHHhhcchhhheeccccc-----------chhhhhHHHHHHHHhhhhh
Confidence 44555555543 466666666665444 48999999999999877642 4789999999999999999
Q ss_pred cCCcc--CCeEEEEeecCCC
Q 003485 181 HGFVL--EGKSLKACFGTTK 198 (816)
Q Consensus 181 NG~~L--dGR~LRASfGTTK 198 (816)
.|..+ -|-+.||.|+.+-
T Consensus 355 ~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 355 QGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred cCCcccccCCceeEEecccc
Confidence 99974 6889999999875
No 192
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=62.40 E-value=6.6 Score=40.07 Aligned_cols=50 Identities=24% Similarity=0.689 Sum_probs=34.7
Q ss_pred cCCCCCCCcccCCCccCCCccccCC-C-----chhhhhhHhHhHHhhhhcccCCCCCCCCCCCccc
Q 003485 4 EGEKTCPLCAEEMDLTDQQLKPCKC-G-----YEICVWCWHHIMDMAEKEETEGRCPACRSPYDKE 63 (816)
Q Consensus 4 e~d~~CPLC~EelD~tD~~f~PC~C-G-----YQIC~fC~h~I~~~~~K~~~~grCPACRr~Ydee 63 (816)
+.+..|-+|.++-+. -..||.| | .|-|+ .+=++ ....-+||-|+.+|.=.
T Consensus 6 ~~~~~CRIC~~~~~~---~~~PC~CkGs~k~VH~sCL---~rWi~----~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 6 LMDKCCWICKDEYDV---VTNYCNCKNENKIVHKECL---EEWIN----TSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCCeeEecCCCCCC---ccCCcccCCCchHHHHHHH---HHHHh----cCCCCcccccCCeEEEE
Confidence 457899999999752 3479999 5 45444 33222 23577999999999643
No 193
>smart00356 ZnF_C3H1 zinc finger.
Probab=62.13 E-value=6.6 Score=27.31 Aligned_cols=23 Identities=26% Similarity=0.704 Sum_probs=17.4
Q ss_pred CCccccccCCCCCC-CCCCcccccC
Q 003485 197 TKYCHAWLRNVPCT-NPDCLYLHEV 220 (816)
Q Consensus 197 TKYCs~FLRg~~C~-NpdCmYLHE~ 220 (816)
+..|..|+.| .|. .+.|.|+|+.
T Consensus 4 ~~~C~~~~~g-~C~~g~~C~~~H~~ 27 (27)
T smart00356 4 TELCKFFKRG-YCPYGDRCKFAHPL 27 (27)
T ss_pred CCcCcCccCC-CCCCCCCcCCCCcC
Confidence 4579999555 566 4789999974
No 194
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=60.09 E-value=2.8 Score=36.75 Aligned_cols=34 Identities=26% Similarity=0.718 Sum_probs=19.5
Q ss_pred CCCc-cccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCC
Q 003485 20 DQQL-KPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRS 58 (816)
Q Consensus 20 D~~f-~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr 58 (816)
.+.| +|||||-+. .--+..++ .-+.-.|||.|--
T Consensus 18 ~~~ftyPCPCGDRF-eIsLeDl~----~GE~VArCPSCSL 52 (67)
T COG5216 18 EKTFTYPCPCGDRF-EISLEDLR----NGEVVARCPSCSL 52 (67)
T ss_pred CceEEecCCCCCEe-EEEHHHhh----CCceEEEcCCceE
Confidence 3444 899998541 01223332 2345689999965
No 195
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=59.95 E-value=7.8 Score=43.88 Aligned_cols=74 Identities=12% Similarity=0.168 Sum_probs=52.0
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 003485 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (816)
Q Consensus 110 rNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~ 189 (816)
|=.+||+||-|..+++|||+--.-.|-- .|.+|+.-.++..+ .++|+|.|........++-++.|--..|+|+.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~-~~~dmKFFENR~NG-----QSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~ 153 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLA-QFADMKFFENRTNG-----QSKGYALLVLNSDAAVKQTMEILPTKTIHGQS 153 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHH-HHhhhhhhhcccCC-----cccceEEEEecchHHHHHHHHhcccceecCCC
Confidence 3578999999999999999532222211 34455543333322 35789999999988888888888888888873
No 196
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.56 E-value=6 Score=44.66 Aligned_cols=49 Identities=24% Similarity=0.588 Sum_probs=35.7
Q ss_pred CCCCCCcc-cCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCC
Q 003485 6 EKTCPLCA-EEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPA 55 (816)
Q Consensus 6 d~~CPLC~-EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPA 55 (816)
...|.+|+ |.++ -|..|..+.|+.++|..||.+-.+.........+||.
T Consensus 146 ~~~C~iC~~e~~~-~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~ 195 (384)
T KOG1812|consen 146 KEECGICFVEDPE-AEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPH 195 (384)
T ss_pred cccCccCcccccc-HhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCC
Confidence 46899999 5554 5566669999999999999976664334445556653
No 197
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=57.59 E-value=22 Score=41.50 Aligned_cols=67 Identities=16% Similarity=0.368 Sum_probs=56.6
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCc-ceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC
Q 003485 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYG-KVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (816)
Q Consensus 110 rNLVYVvGLP~~IaeEDLLKk~EyFGQYG-KI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~Ld 186 (816)
.++|.|.++|.-++--|+| .|.+.+= .|..|.|.||... .++.+-|+|.+.+||..=-+.+||..+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll---~F~~~~~~~I~~irivRd~~p-------nrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLL---RFCASFIKQISDIRIVRDGMP-------NRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHH---HHHHHHhhhhheeEEeecCCC-------ceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 7899999999999999999 5666554 4678999996543 4789999999999999999999998863
No 198
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=56.38 E-value=5.6 Score=34.79 Aligned_cols=53 Identities=30% Similarity=0.590 Sum_probs=19.3
Q ss_pred CCCCCCcccCCC-ccCCCcccc---CCCc---hhhhhhHhHhHHhhhhc-----ccCCCCCCCCCCCc
Q 003485 6 EKTCPLCAEEMD-LTDQQLKPC---KCGY---EICVWCWHHIMDMAEKE-----ETEGRCPACRSPYD 61 (816)
Q Consensus 6 d~~CPLC~EelD-~tD~~f~PC---~CGY---QIC~fC~h~I~~~~~K~-----~~~grCPACRr~Yd 61 (816)
+..|++|++.+. .....-.-| .|+. ..|+.=|=+= .++. -..|.||.|+.++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~---~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLS---LEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHH---HHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHH---cccCCeeecccccCCcCCCCeee
Confidence 478999999865 222323444 5764 4555555321 1111 23577999999653
No 199
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=55.88 E-value=5.2 Score=43.33 Aligned_cols=50 Identities=24% Similarity=0.658 Sum_probs=37.0
Q ss_pred CCCCCCcccCCCc-cCCCccccC-CCchhhhhhHhHhHHhhhhcccCCCCC--CCCCCC
Q 003485 6 EKTCPLCAEEMDL-TDQQLKPCK-CGYEICVWCWHHIMDMAEKEETEGRCP--ACRSPY 60 (816)
Q Consensus 6 d~~CPLC~EelD~-tD~~f~PC~-CGYQIC~fC~h~I~~~~~K~~~~grCP--ACRr~Y 60 (816)
|..||+|.-+-=+ -|..|+-=| |=..||--|.+||.. .....|| +|-+-.
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs-----~GpAqCP~~gC~kIL 63 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFS-----RGPAQCPYKGCGKIL 63 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhc-----CCCCCCCCccHHHHH
Confidence 5689999765422 244555566 899999999999974 4678899 997643
No 200
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=53.77 E-value=0.74 Score=52.64 Aligned_cols=70 Identities=27% Similarity=0.434 Sum_probs=56.1
Q ss_pred EEEeCCCCCCChHHHHHHHhhhcCCcceeEEEE-eecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEEE
Q 003485 113 VYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSM-SRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLK 191 (816)
Q Consensus 113 VYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvI-nrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~LR 191 (816)
+-+.++|+.+.-| +| ..+.++||.+..+.+ +.+..+ ..+-|||...+.|..||..++|.++....++
T Consensus 83 ~Qirnippql~we-vl--d~Ll~qyg~ve~~eqvnt~~et---------avvnvty~~~~~~~~ai~kl~g~Q~en~~~k 150 (584)
T KOG2193|consen 83 IQIRNIPPQLQWE-VL--DSLLAQYGTVENCEQVNTDSET---------AVVNVTYSAQQQHRQAIHKLNGPQLENQHLK 150 (584)
T ss_pred hhHhcCCHHHHHH-HH--HHHHhccCCHhHhhhhccchHH---------HHHHHHHHHHHHHHHHHHhhcchHhhhhhhh
Confidence 5567788888664 55 579999999998765 333322 3457899999999999999999999999999
Q ss_pred Eee
Q 003485 192 ACF 194 (816)
Q Consensus 192 ASf 194 (816)
+.|
T Consensus 151 ~~Y 153 (584)
T KOG2193|consen 151 VGY 153 (584)
T ss_pred ccc
Confidence 887
No 201
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=52.24 E-value=8.3 Score=42.00 Aligned_cols=109 Identities=13% Similarity=0.160 Sum_probs=76.3
Q ss_pred CEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEE
Q 003485 111 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 190 (816)
Q Consensus 111 NLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~L 190 (816)
...||+.+.+.+.+.+. ..+|..+|.+....+....... ..+++.||-|...+.+..|++..-...++++.+
T Consensus 89 ~~~f~g~~s~~~e~~~~---~~~~~~~g~~~~~~~S~~~~~~-----~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~ 160 (285)
T KOG4210|consen 89 STFFVGELSENIEESED---DNFSSEAGLRVDARSSSLEDSL-----SSKGGLSVHFAGKSQFFAALEESGSKVLDGNKG 160 (285)
T ss_pred ccccccccccchhhccc---cccchhhcCcccchhhhhcccc-----ccccceeeccccHHHHHHHHHhhhccccccccc
Confidence 45799999999866644 3789999988888876544322 245678999999999999999777779999999
Q ss_pred EEeecCCCccccccCCCCCCCC-----CCccccc-CCCCCCCccHHHHH
Q 003485 191 KACFGTTKYCHAWLRNVPCTNP-----DCLYLHE-VGSQEDSFTKDEII 233 (816)
Q Consensus 191 RASfGTTKYCs~FLRg~~C~Np-----dCmYLHE-~g~~~DsfTKeem~ 233 (816)
...+.+.+- -+.|... .+.+.=. .+.-..+.|++|+.
T Consensus 161 ~~dl~~~~~------~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~ 203 (285)
T KOG4210|consen 161 EKDLNTRRG------LRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLK 203 (285)
T ss_pred cCccccccc------ccccchhcccccCccccceeecccccccchHHHh
Confidence 999877663 2233322 2333333 33445567788876
No 202
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.56 E-value=13 Score=41.00 Aligned_cols=50 Identities=24% Similarity=0.571 Sum_probs=37.0
Q ss_pred CCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCc
Q 003485 5 GEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (816)
Q Consensus 5 ~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Yd 61 (816)
.+.+||+|-|+=.+ .+.-=+||...|-+|-..-+. .+--.+||+|-.+-.
T Consensus 238 ~~~~C~~Cg~~Pti---P~~~~~C~HiyCY~Ci~ts~~----~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTI---PHVIGKCGHIYCYYCIATSRL----WDASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCC---Ceeeccccceeehhhhhhhhc----chhhcccCccCCCCc
Confidence 46899999998766 566667999988888776543 223479999987543
No 203
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=48.57 E-value=1e+02 Score=29.61 Aligned_cols=66 Identities=18% Similarity=0.379 Sum_probs=46.4
Q ss_pred CEEEEeCCCCCCChHHHHHHHhhhc-CCc-ceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC
Q 003485 111 NLVYIVGLPLNLGDEDLLQRREYFG-QYG-KVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (816)
Q Consensus 111 NLVYVvGLP~~IaeEDLLKk~EyFG-QYG-KI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~Ld 186 (816)
.+|-|...|+....-+.| .+|| .+- .|..++|.++... .++-+=|.|.++++|.+=.+..||..+.
T Consensus 13 ~~~~~l~vp~~~~~~d~l---~~f~~~~~~~i~~~riird~~p-------nrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFL---LFFGAPFREDIEHIRIIRDGTP-------NRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHH---HHhhhcccccEEEEEEeeCCCC-------ceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 455666666665554444 2555 343 3557778776432 4789999999999999999999999874
No 204
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=47.61 E-value=3.6 Score=49.89 Aligned_cols=26 Identities=35% Similarity=0.763 Sum_probs=18.6
Q ss_pred CCCCCCcccCC-CccCCCc-c---ccC-CCch
Q 003485 6 EKTCPLCAEEM-DLTDQQL-K---PCK-CGYE 31 (816)
Q Consensus 6 d~~CPLC~Eel-D~tD~~f-~---PC~-CGYQ 31 (816)
-.+|+-|.+|| |..++.| | -|+ ||=+
T Consensus 101 ~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPR 132 (750)
T COG0068 101 AATCEDCLEEIFDPNSRRYLYPFINCTNCGPR 132 (750)
T ss_pred hhhhHHHHHHhcCCCCcceeccccccCCCCcc
Confidence 35899999887 7777655 3 476 7754
No 205
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=47.34 E-value=37 Score=29.56 Aligned_cols=59 Identities=12% Similarity=0.223 Sum_probs=33.2
Q ss_pred CCCChHHHHHHHhhhcCCccee-----EEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEEEEee
Q 003485 120 LNLGDEDLLQRREYFGQYGKVL-----KVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKACF 194 (816)
Q Consensus 120 ~~IaeEDLLKk~EyFGQYGKI~-----KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~LRASf 194 (816)
..+...+|+ .++..-+.|. +|.|.. .+.||+-.. +.|.+++..|+|..+.||.|+|..
T Consensus 11 dg~~~~~iv---~~i~~~~gi~~~~IG~I~I~~-------------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 11 DGLTPRDIV---GAICNEAGIPGRDIGRIDIFD-------------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp GT--HHHHH---HHHHTCTTB-GGGEEEEEE-S-------------S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE
T ss_pred cCCCHHHHH---HHHHhccCCCHHhEEEEEEee-------------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEE
Confidence 356667777 6777666554 455432 246888777 479999999999999999999975
Q ss_pred c
Q 003485 195 G 195 (816)
Q Consensus 195 G 195 (816)
|
T Consensus 74 A 74 (74)
T PF03880_consen 74 A 74 (74)
T ss_dssp -
T ss_pred C
Confidence 4
No 206
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=46.65 E-value=10 Score=35.98 Aligned_cols=49 Identities=24% Similarity=0.573 Sum_probs=33.3
Q ss_pred CCCCCCCcccCCCccCCCccccC-CCchhhhhhHhHhHHhhhhcccCCCCCCCCC
Q 003485 5 GEKTCPLCAEEMDLTDQQLKPCK-CGYEICVWCWHHIMDMAEKEETEGRCPACRS 58 (816)
Q Consensus 5 ~d~~CPLC~EelD~tD~~f~PC~-CGYQIC~fC~h~I~~~~~K~~~~grCPACRr 58 (816)
++..|.+|..+|.+-+..-..|. |++.||.-|--.. +....-+|-.|++
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~-----~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYS-----KKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEET-----SSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCcC-----CCCCCEEChhhHH
Confidence 56899999999987776667887 8888888886653 1223446666654
No 207
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=46.48 E-value=7.6 Score=28.21 Aligned_cols=24 Identities=29% Similarity=0.704 Sum_probs=18.4
Q ss_pred CCCccccccCCCCCCC-CCCccccc
Q 003485 196 TTKYCHAWLRNVPCTN-PDCLYLHE 219 (816)
Q Consensus 196 TTKYCs~FLRg~~C~N-pdCmYLHE 219 (816)
.++-|..|++.-.|.. ..|.|+|.
T Consensus 2 k~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 2 KTKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp TSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred ccccChhhccCCccCCCCCcCccCC
Confidence 3678999999889999 89999996
No 208
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=43.54 E-value=12 Score=30.39 Aligned_cols=34 Identities=29% Similarity=0.653 Sum_probs=19.5
Q ss_pred CCCCCCC--cccCCCccCCCc---cccC-CCchhhhhhHh
Q 003485 5 GEKTCPL--CAEEMDLTDQQL---KPCK-CGYEICVWCWH 38 (816)
Q Consensus 5 ~d~~CPL--C~EelD~tD~~f---~PC~-CGYQIC~fC~h 38 (816)
+-..||- |-..+-..+..- .-|+ |++++|.-|-.
T Consensus 17 ~~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~ 56 (64)
T PF01485_consen 17 NIRWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGE 56 (64)
T ss_dssp -CC--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTS
T ss_pred CccCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCc
Confidence 3468977 988886666555 4699 99998887743
No 209
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=42.90 E-value=14 Score=43.07 Aligned_cols=24 Identities=33% Similarity=0.695 Sum_probs=16.8
Q ss_pred CCCCCCCcccCCCccCCCccccCC
Q 003485 5 GEKTCPLCAEEMDLTDQQLKPCKC 28 (816)
Q Consensus 5 ~d~~CPLC~EelD~tD~~f~PC~C 28 (816)
+-.+||.|.|.||..=.-+.|=.|
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c 197 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILC 197 (493)
T ss_pred cCCCcchhHhhcCccccceeeeec
Confidence 357999999999965544444333
No 210
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.84 E-value=18 Score=38.49 Aligned_cols=49 Identities=29% Similarity=0.664 Sum_probs=39.6
Q ss_pred CCCCCcccCCCccCC--CccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCC
Q 003485 7 KTCPLCAEEMDLTDQ--QLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPY 60 (816)
Q Consensus 7 ~~CPLC~EelD~tD~--~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Y 60 (816)
..|-+|-++++..|. .-+--+||.-||..|..++. .+....||=||.+-
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~-----~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLL-----GNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHh-----cCceeeccCCCCcc
Confidence 579999999976643 33446699999999999996 36778999999984
No 211
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=40.87 E-value=14 Score=41.57 Aligned_cols=41 Identities=27% Similarity=0.681 Sum_probs=28.4
Q ss_pred CCCCCCcccCCCccCCCccccCC---CchhhhhhHhHhHHhhhhcccCCCCCCCCC
Q 003485 6 EKTCPLCAEEMDLTDQQLKPCKC---GYEICVWCWHHIMDMAEKEETEGRCPACRS 58 (816)
Q Consensus 6 d~~CPLC~EelD~tD~~f~PC~C---GYQIC~fC~h~I~~~~~K~~~~grCPACRr 58 (816)
...||+|.-.- --||.| ||-.|--|-.+-+. ..|+||---.
T Consensus 300 ~~~CpvClk~r------~Nptvl~vSGyVfCY~Ci~~Yv~------~~~~CPVT~~ 343 (357)
T KOG0826|consen 300 REVCPVCLKKR------QNPTVLEVSGYVFCYPCIFSYVV------NYGHCPVTGY 343 (357)
T ss_pred cccChhHHhcc------CCCceEEecceEEeHHHHHHHHH------hcCCCCccCC
Confidence 47999997654 357777 99977777665542 4799985433
No 212
>PF06827 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; InterPro: IPR010663 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger domain found at the C-terminal in both DNA glycosylase/AP lyase enzymes and in isoleucyl tRNA synthetase. In these two types of enzymes, the C-terminal domain forms a zinc finger. Some related proteins may not bind zinc. DNA glycosylase/AP lyase enzymes are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. These enzymes have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC) []. Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines []. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above, but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine [, ]. An Fpg-type zinc finger is also found at the C terminus of isoleucyl tRNA synthetase (6.1.1.5 from EC) [, ]. This enzyme catalyses the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pre-transfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'post-transfer' editing and involves deacylation of mischarged Val-tRNA(Ile) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003824 catalytic activity; PDB: 1K82_C 1Q39_A 2OQ4_B 2OPF_A 1K3X_A 1K3W_A 1Q3B_A 2EA0_A 1Q3C_A 2XZF_A ....
Probab=40.57 E-value=3.9 Score=30.08 Aligned_cols=28 Identities=32% Similarity=0.815 Sum_probs=15.4
Q ss_pred hhhhhhHhHhHHhhhhcccCCCCCCCCC
Q 003485 31 EICVWCWHHIMDMAEKEETEGRCPACRS 58 (816)
Q Consensus 31 QIC~fC~h~I~~~~~K~~~~grCPACRr 58 (816)
+-|.-||+.|.+..........||.|-.
T Consensus 2 ~~C~rC~~~~~~~~~~~r~~~~C~rCq~ 29 (30)
T PF06827_consen 2 EKCPRCWNYIEDIGINGRSTYLCPRCQK 29 (30)
T ss_dssp SB-TTT--BBEEEEETTEEEEE-TTTCC
T ss_pred CcCccCCCcceEeEecCCCCeECcCCcC
Confidence 5688999998653322334678999864
No 213
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=39.80 E-value=20 Score=44.41 Aligned_cols=55 Identities=27% Similarity=0.678 Sum_probs=41.2
Q ss_pred cCCCCCCCcccCCCccCCCccccCCCc------hhhhhhHhHhHHhhhhcccCCCCCCCCCCCcccch
Q 003485 4 EGEKTCPLCAEEMDLTDQQLKPCKCGY------EICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (816)
Q Consensus 4 e~d~~CPLC~EelD~tD~~f~PC~CGY------QIC~fC~h~I~~~~~K~~~~grCPACRr~Ydee~i 65 (816)
||+..|-+|--|=-..|..|-||+|.= |-|+-=|-. ......|--|.-+|.=.+|
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~-------~s~~~kCdiChy~~~Fk~I 70 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWME-------CSGTKKCDICHYEYKFKDI 70 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHh-------cCCCcceeeecceeeeeee
Confidence 345999999888878889999999942 456655543 2457899999998865554
No 214
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=39.70 E-value=27 Score=32.31 Aligned_cols=54 Identities=26% Similarity=0.741 Sum_probs=29.1
Q ss_pred CCCCCCcccCCCccCCC--c--cccCCCchhhhhhHhH--hHH-hhhhcccCCCCCCCCCCC
Q 003485 6 EKTCPLCAEEMDLTDQQ--L--KPCKCGYEICVWCWHH--IMD-MAEKEETEGRCPACRSPY 60 (816)
Q Consensus 6 d~~CPLC~EelD~tD~~--f--~PC~CGYQIC~fC~h~--I~~-~~~K~~~~grCPACRr~Y 60 (816)
+++|-||--+||-+=.. | --||==.-+|.-++|. |.+ .+.+ ..++.||-||+.+
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~-tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTP-TSQGQCPMCRQTW 80 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCc-cccccCCcchhee
Confidence 44666666666542110 0 0133223478877773 443 3333 3459999999965
No 215
>PF12773 DZR: Double zinc ribbon
Probab=37.86 E-value=28 Score=27.87 Aligned_cols=42 Identities=19% Similarity=0.536 Sum_probs=24.1
Q ss_pred CCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCccc
Q 003485 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKE 63 (816)
Q Consensus 9 CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Ydee 63 (816)
||-|-++++.. ..+|.+|=..+.. .......||+|.++++..
T Consensus 1 Cp~Cg~~~~~~----------~~fC~~CG~~l~~---~~~~~~~C~~Cg~~~~~~ 42 (50)
T PF12773_consen 1 CPHCGTPNPDD----------AKFCPHCGTPLPP---PDQSKKICPNCGAENPPN 42 (50)
T ss_pred CCCcCCcCCcc----------ccCChhhcCChhh---ccCCCCCCcCCcCCCcCC
Confidence 66666666541 3455666665531 123456788888876543
No 216
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=37.50 E-value=80 Score=33.67 Aligned_cols=71 Identities=20% Similarity=0.262 Sum_probs=54.8
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 003485 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (816)
Q Consensus 110 rNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR~ 189 (816)
...|.|.|||+.-.=.||. +..-+-|.|--..|-+| +.+-|.|.+.||-+-||..|+...+.
T Consensus 115 e~RVvVsGLp~SgSWQDLK---DHmReaGdvCfadv~rD------------g~GvV~~~r~eDMkYAvr~ld~~~~~--- 176 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLK---DHMREAGDVCFADVQRD------------GVGVVEYLRKEDMKYAVRKLDDQKFR--- 176 (241)
T ss_pred ceeEEEecCCCCCchHHHH---HHHHhhCCeeeeeeecc------------cceeeeeeehhhHHHHHHhhcccccc---
Confidence 4678899999998888874 78888899877777654 24689999999999999999876652
Q ss_pred EEEeecCCCccc
Q 003485 190 LKACFGTTKYCH 201 (816)
Q Consensus 190 LRASfGTTKYCs 201 (816)
++|.|-|-.
T Consensus 177 ---seGe~~yir 185 (241)
T KOG0105|consen 177 ---SEGETAYIR 185 (241)
T ss_pred ---CcCcEeeEE
Confidence 355555433
No 217
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.94 E-value=27 Score=39.55 Aligned_cols=48 Identities=23% Similarity=0.600 Sum_probs=31.3
Q ss_pred CCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCC-CCCCCCCCcc
Q 003485 8 TCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGR-CPACRSPYDK 62 (816)
Q Consensus 8 ~CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~gr-CPACRr~Yde 62 (816)
.|.+|+|++..-|+. +-.||+...=.-|-+.=+- ...+ ||-|++....
T Consensus 231 ~CaIClEdY~~Gdkl-RiLPC~H~FH~~CIDpWL~------~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 231 TCAICLEDYEKGDKL-RILPCSHKFHVNCIDPWLT------QTRTFCPVCKRDIRT 279 (348)
T ss_pred eEEEeecccccCCee-eEecCCCchhhccchhhHh------hcCccCCCCCCcCCC
Confidence 999999999776654 3355544433566665542 2344 9999995543
No 218
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=34.46 E-value=18 Score=45.65 Aligned_cols=49 Identities=29% Similarity=0.712 Sum_probs=32.1
Q ss_pred cCCCCCCCcccCCCccCCCc--cccCCCchhhhhhHhHhH-----HhhhhcccCCCCCCCCCCC
Q 003485 4 EGEKTCPLCAEEMDLTDQQL--KPCKCGYEICVWCWHHIM-----DMAEKEETEGRCPACRSPY 60 (816)
Q Consensus 4 e~d~~CPLC~EelD~tD~~f--~PC~CGYQIC~fC~h~I~-----~~~~K~~~~grCPACRr~Y 60 (816)
++-++||+|+--|+..|+.| +-|+ - |-|++- .- .+...+.+||-||..+
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~--T-----CknKFH~~CLyKW-f~Ss~~s~CPlCRsei 1522 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCA--T-----CKNKFHTRCLYKW-FASSARSNCPLCRSEI 1522 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccc--h-----hhhhhhHHHHHHH-HHhcCCCCCCcccccc
Confidence 46689999999999999988 5665 0 000000 00 0245688999999754
No 219
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=33.73 E-value=48 Score=27.29 Aligned_cols=46 Identities=24% Similarity=0.675 Sum_probs=28.6
Q ss_pred CCCCcccCCCccCCCccccCCCc--h-hhhhhHhHhHHhhhhcccCCCCCCCC
Q 003485 8 TCPLCAEEMDLTDQQLKPCKCGY--E-ICVWCWHHIMDMAEKEETEGRCPACR 57 (816)
Q Consensus 8 ~CPLC~EelD~tD~~f~PC~CGY--Q-IC~fC~h~I~~~~~K~~~~grCPACR 57 (816)
.|-+|.+..+..+..+.||.|.- + +=.-|..+=+.. .....||-|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~----~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINE----SGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHH----cCCCcCCCCC
Confidence 48899987777777889999941 1 112344444321 1244898884
No 220
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.34 E-value=37 Score=37.98 Aligned_cols=53 Identities=25% Similarity=0.451 Sum_probs=34.1
Q ss_pred CCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcccchhcc
Q 003485 6 EKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGM 68 (816)
Q Consensus 6 d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Ydee~i~~~ 68 (816)
..+|++|...+-- . .--.|+.. |||-.|.-.+ + +..+-|+-||.|+|+. |-+.
T Consensus 7 ~~eC~IC~nt~n~-P---v~l~C~Hk---FCyiCiKGsy-~-ndk~~CavCR~pids~-i~~~ 59 (324)
T KOG0824|consen 7 KKECLICYNTGNC-P---VNLYCFHK---FCYICIKGSY-K-NDKKTCAVCRFPIDST-IDFE 59 (324)
T ss_pred CCcceeeeccCCc-C---ccccccch---hhhhhhcchh-h-cCCCCCceecCCCCcc-hhcc
Confidence 5789999998842 2 33468888 5555554321 2 2334599999999986 4433
No 221
>PRK11595 DNA utilization protein GntX; Provisional
Probab=32.96 E-value=34 Score=35.56 Aligned_cols=40 Identities=28% Similarity=0.639 Sum_probs=27.1
Q ss_pred CCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCc
Q 003485 7 KTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (816)
Q Consensus 7 ~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Yd 61 (816)
..|++|-+.+... ...||..|+..+.- ...+||.|-++..
T Consensus 6 ~~C~~C~~~~~~~---------~~~lC~~C~~~l~~------~~~~C~~Cg~~~~ 45 (227)
T PRK11595 6 GLCWLCRMPLALS---------HWGICSVCSRALRT------LKTCCPQCGLPAT 45 (227)
T ss_pred CcCccCCCccCCC---------CCcccHHHHhhCCc------ccCcCccCCCcCC
Confidence 3699998877432 13489999988731 2357888887754
No 222
>PF12773 DZR: Double zinc ribbon
Probab=32.91 E-value=36 Score=27.21 Aligned_cols=29 Identities=38% Similarity=0.783 Sum_probs=23.1
Q ss_pred ccCCCCCCCcccCCCccCCCccccC-CCch
Q 003485 3 DEGEKTCPLCAEEMDLTDQQLKPCK-CGYE 31 (816)
Q Consensus 3 de~d~~CPLC~EelD~tD~~f~PC~-CGYQ 31 (816)
+++...||.|-.+|...+...+.|+ ||+.
T Consensus 9 ~~~~~fC~~CG~~l~~~~~~~~~C~~Cg~~ 38 (50)
T PF12773_consen 9 PDDAKFCPHCGTPLPPPDQSKKICPNCGAE 38 (50)
T ss_pred CccccCChhhcCChhhccCCCCCCcCCcCC
Confidence 3557899999999986777888885 8875
No 223
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=31.59 E-value=21 Score=41.05 Aligned_cols=24 Identities=33% Similarity=0.924 Sum_probs=16.8
Q ss_pred CCccccC-CCchhhhhhHhHhHHhhhhcccCCCCCCCCC
Q 003485 21 QQLKPCK-CGYEICVWCWHHIMDMAEKEETEGRCPACRS 58 (816)
Q Consensus 21 ~~f~PC~-CGYQIC~fC~h~I~~~~~K~~~~grCPACRr 58 (816)
+..|-|. |||+- . .-.|+||+|+.
T Consensus 5 ~~~y~C~~Cg~~~-----~---------~~~g~Cp~C~~ 29 (454)
T TIGR00416 5 KSKFVCQHCGADS-----P---------KWQGKCPACHA 29 (454)
T ss_pred CCeEECCcCCCCC-----c---------cccEECcCCCC
Confidence 4457787 88881 1 23699999976
No 224
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=31.58 E-value=31 Score=25.53 Aligned_cols=21 Identities=48% Similarity=1.116 Sum_probs=14.8
Q ss_pred CCCCcccCCCccCCCccccC-CCch
Q 003485 8 TCPLCAEEMDLTDQQLKPCK-CGYE 31 (816)
Q Consensus 8 ~CPLC~EelD~tD~~f~PC~-CGYQ 31 (816)
.||-|-.++-+ .-+-|+ |||.
T Consensus 2 ~CP~C~~~V~~---~~~~Cp~CG~~ 23 (26)
T PF10571_consen 2 TCPECGAEVPE---SAKFCPHCGYD 23 (26)
T ss_pred cCCCCcCCchh---hcCcCCCCCCC
Confidence 68888887754 556677 7775
No 225
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=30.83 E-value=11 Score=41.49 Aligned_cols=60 Identities=22% Similarity=0.582 Sum_probs=43.9
Q ss_pred CccCCCCCCCccc-CCCccCCCccccC-CCchhhhhhHhHhHHhhh-hcccCCCCCCCCCCCcc
Q 003485 2 SDEGEKTCPLCAE-EMDLTDQQLKPCK-CGYEICVWCWHHIMDMAE-KEETEGRCPACRSPYDK 62 (816)
Q Consensus 2 sde~d~~CPLC~E-elD~tD~~f~PC~-CGYQIC~fC~h~I~~~~~-K~~~~grCPACRr~Yde 62 (816)
-|.+...|+.|.- +|.+.++..- |. ||..+|..|-+++..+-. .+....-|+.|-..|.+
T Consensus 164 PD~ea~~C~~C~~~~Ftl~~RRHH-CR~CG~ivC~~Cs~n~~~l~~~~~k~~rvC~~CF~el~~ 226 (288)
T KOG1729|consen 164 PDSEATECMVCGCTEFTLSERRHH-CRNCGDIVCAPCSRNRFLLPNLSTKPIRVCDICFEELEK 226 (288)
T ss_pred CcccceecccCCCccccHHHHHHH-HHhcchHhhhhhhcCcccccccCCCCceecHHHHHHHhc
Confidence 3667789999999 9999998877 86 999999999998543211 11222258888777754
No 226
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=30.04 E-value=68 Score=33.80 Aligned_cols=95 Identities=19% Similarity=0.197 Sum_probs=61.9
Q ss_pred EEEeCCCCCCC--hHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe-E
Q 003485 113 VYIVGLPLNLG--DEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK-S 189 (816)
Q Consensus 113 VYVvGLP~~Ia--eEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR-~ 189 (816)
+.+..+...+- .++..+-..+|-||-+..-..+.| .-+.+=|.|.+++.|++|...++++.|.|+ .
T Consensus 13 ~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr-----------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~ 81 (193)
T KOG4019|consen 13 IIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR-----------SFRRVRINFSNPEAAADARIKLHSTSFNGKNE 81 (193)
T ss_pred eeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH-----------hhceeEEeccChhHHHHHHHHhhhcccCCCce
Confidence 44555555432 223223357787877665444332 123578999999999999999999999998 9
Q ss_pred EEEeecCCCccccccCCCCCCCCCCcccc
Q 003485 190 LKACFGTTKYCHAWLRNVPCTNPDCLYLH 218 (816)
Q Consensus 190 LRASfGTTKYCs~FLRg~~C~NpdCmYLH 218 (816)
+++-|+..-|-..--...+-..++=+||=
T Consensus 82 ~k~yfaQ~~~~~~~~q~L~pP~~eKqFLI 110 (193)
T KOG4019|consen 82 LKLYFAQPGHPESNSQYLQPPEPEKQFLI 110 (193)
T ss_pred EEEEEccCCCccccccccCCCChhhceee
Confidence 99999888776553344444444444443
No 227
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=29.94 E-value=20 Score=38.54 Aligned_cols=26 Identities=35% Similarity=0.759 Sum_probs=21.3
Q ss_pred ccccccCCCCCCCCCCcccccCCCCCC
Q 003485 199 YCHAWLRNVPCTNPDCLYLHEVGSQED 225 (816)
Q Consensus 199 YCs~FLRg~~C~NpdCmYLHE~g~~~D 225 (816)
.|.+||-| +|.||+|.|+|=.-.+..
T Consensus 263 acryfllg-kcnnpncryvhihysena 288 (377)
T KOG1492|consen 263 ACRYFLLG-KCNNPNCRYVHIHYSENA 288 (377)
T ss_pred hhhhhhhc-cCCCCCceEEEEeecCCC
Confidence 47888876 699999999997776655
No 228
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=29.79 E-value=26 Score=27.54 Aligned_cols=26 Identities=27% Similarity=0.797 Sum_probs=22.7
Q ss_pred CCCCCcccCCCccCCCcccc-CCCchh
Q 003485 7 KTCPLCAEEMDLTDQQLKPC-KCGYEI 32 (816)
Q Consensus 7 ~~CPLC~EelD~tD~~f~PC-~CGYQI 32 (816)
..|+.|-..+-.+|--|+-| .||.|+
T Consensus 9 ~~C~~C~~~~~~~~dG~~yC~~cG~~~ 35 (36)
T PF11781_consen 9 EPCPVCGSRWFYSDDGFYYCDRCGHQS 35 (36)
T ss_pred CcCCCCCCeEeEccCCEEEhhhCceEc
Confidence 34999999999999999999 899873
No 229
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.59 E-value=22 Score=43.22 Aligned_cols=48 Identities=21% Similarity=0.562 Sum_probs=33.7
Q ss_pred CCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcccch
Q 003485 7 KTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (816)
Q Consensus 7 ~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Ydee~i 65 (816)
..|++|+.++=..-.--.--.||.-||.-|...+ .+..|| |.+ |+..+
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--------yn~scp-~~~--De~~~ 59 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--------YNASCP-TKR--DEDSS 59 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhH--------hhccCC-CCc--cccch
Confidence 5799998888543222233569999999999988 467898 655 44433
No 230
>PHA02862 5L protein; Provisional
Probab=29.02 E-value=44 Score=34.11 Aligned_cols=45 Identities=20% Similarity=0.570 Sum_probs=31.0
Q ss_pred CCCCCcccCCCccCCCccccCCC------chhhhhhHhHhHHhhhhcccCCCCCCCCCCCc
Q 003485 7 KTCPLCAEEMDLTDQQLKPCKCG------YEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (816)
Q Consensus 7 ~~CPLC~EelD~tD~~f~PC~CG------YQIC~fC~h~I~~~~~K~~~~grCPACRr~Yd 61 (816)
..|=+|-++=|. ...||.|. .|-| ..+=+ +......||-|+.+|.
T Consensus 3 diCWIC~~~~~e---~~~PC~C~GS~K~VHq~C---L~~WI----n~S~k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCDE---RNNFCGCNEEYKVVHIKC---MQLWI----NYSKKKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCCC---CcccccccCcchhHHHHH---HHHHH----hcCCCcCccCCCCeEE
Confidence 569999988543 36999992 2444 33333 2346789999999996
No 231
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=28.71 E-value=45 Score=35.13 Aligned_cols=64 Identities=23% Similarity=0.201 Sum_probs=41.0
Q ss_pred ccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhc
Q 003485 107 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVH 181 (816)
Q Consensus 107 VIQrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaLN 181 (816)
-++...||.- +..-.-++|+ ++-+ |++..|.+-+..... +.-+|.+||||.+.+.|..+++.-.
T Consensus 108 ~~~~r~v~~K--~td~ql~~l~---qw~~--~k~~nv~mr~~~~k~----~~fkGsvkv~f~tk~qa~a~~~~~e 171 (205)
T KOG4213|consen 108 GIKERTVYKK--ITDDQLDDLN---QWAS--GKGHNVKMRRHGNKA----HPFKGSVKVTFQTKEQAFANDDTHE 171 (205)
T ss_pred HHHHhhhhcc--CCHHHHHHHH---HHhc--ccceEeeccccCCCC----CCCCCceEEEeecHHHHHhhhhhhh
Confidence 3455667776 1111223444 4444 999999886543321 1246789999999999999988654
No 232
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=28.02 E-value=30 Score=40.03 Aligned_cols=46 Identities=33% Similarity=0.764 Sum_probs=35.9
Q ss_pred CCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCC
Q 003485 7 KTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPY 60 (816)
Q Consensus 7 ~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Y 60 (816)
+.|-+|.| .|+..+-=+||.-+|--|+..-.+ .++..-||=||-+.
T Consensus 370 eLCKICae----ndKdvkIEPCGHLlCt~CLa~WQ~----sd~gq~CPFCRcEI 415 (563)
T KOG1785|consen 370 ELCKICAE----NDKDVKIEPCGHLLCTSCLAAWQD----SDEGQTCPFCRCEI 415 (563)
T ss_pred HHHHHhhc----cCCCcccccccchHHHHHHHhhcc----cCCCCCCCceeeEe
Confidence 46888876 567778888999999999887753 34466799999865
No 233
>PRK04023 DNA polymerase II large subunit; Validated
Probab=27.74 E-value=60 Score=41.46 Aligned_cols=46 Identities=28% Similarity=0.718 Sum_probs=33.5
Q ss_pred CCCCCCCcccCCCccCCCccccC-CCc-----hhhhhhHhHhHHhhhhcccCCCCCCCCCCCccc
Q 003485 5 GEKTCPLCAEEMDLTDQQLKPCK-CGY-----EICVWCWHHIMDMAEKEETEGRCPACRSPYDKE 63 (816)
Q Consensus 5 ~d~~CPLC~EelD~tD~~f~PC~-CGY-----QIC~fC~h~I~~~~~K~~~~grCPACRr~Ydee 63 (816)
+...||-|-... ..+.|+ ||- -.|..|-... ....||.|-.+-...
T Consensus 625 g~RfCpsCG~~t-----~~frCP~CG~~Te~i~fCP~CG~~~--------~~y~CPKCG~El~~~ 676 (1121)
T PRK04023 625 GRRKCPSCGKET-----FYRRCPFCGTHTEPVYRCPRCGIEV--------EEDECEKCGREPTPY 676 (1121)
T ss_pred cCccCCCCCCcC-----CcccCCCCCCCCCcceeCccccCcC--------CCCcCCCCCCCCCcc
Confidence 357899999985 668999 994 4788883332 346799999866544
No 234
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.56 E-value=92 Score=35.78 Aligned_cols=65 Identities=22% Similarity=0.599 Sum_probs=43.7
Q ss_pred cCCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCC--CC--CCCCCCCcccchhcccch
Q 003485 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEG--RC--PACRSPYDKEKIVGMAAK 71 (816)
Q Consensus 4 e~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~g--rC--PACRr~Ydee~i~~~~~~ 71 (816)
..+..|.+|++..+. .+.-=.||+.+|..||...+...--.+..+ .| +.|+..-+++.|......
T Consensus 68 ~~~~~c~ic~~~~~~---~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~i~~~~s~ 136 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG---EIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDTVEKLVSD 136 (444)
T ss_pred CccccCCcccCCCcc---hhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCceeeeecCC
Confidence 456899999999976 444456899999999997554211122222 34 468888888887654443
No 235
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=27.39 E-value=32 Score=28.37 Aligned_cols=38 Identities=29% Similarity=0.594 Sum_probs=23.4
Q ss_pred CCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCC
Q 003485 6 EKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRS 58 (816)
Q Consensus 6 d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr 58 (816)
.-.||.|-+.+|...+ + .++.+.=..+..+..||-|..
T Consensus 2 ~f~CP~C~~~~~~~~L--------------~-~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 2 SFTCPYCGKGFSESSL--------------V-EHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CcCCCCCCCccCHHHH--------------H-HHHHhHCcCCCCCccCCCchh
Confidence 3579999997775321 1 244432223345789999987
No 236
>PRK11823 DNA repair protein RadA; Provisional
Probab=27.27 E-value=31 Score=39.64 Aligned_cols=24 Identities=38% Similarity=0.873 Sum_probs=16.7
Q ss_pred CCccccC-CCchhhhhhHhHhHHhhhhcccCCCCCCCCC
Q 003485 21 QQLKPCK-CGYEICVWCWHHIMDMAEKEETEGRCPACRS 58 (816)
Q Consensus 21 ~~f~PC~-CGYQIC~fC~h~I~~~~~K~~~~grCPACRr 58 (816)
+..|-|. |||+- . .-.|+||+|..
T Consensus 5 ~~~y~C~~Cg~~~-----~---------~~~g~Cp~C~~ 29 (446)
T PRK11823 5 KTAYVCQECGAES-----P---------KWLGRCPECGA 29 (446)
T ss_pred CCeEECCcCCCCC-----c---------ccCeeCcCCCC
Confidence 4556787 88882 1 24689999976
No 237
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=27.20 E-value=22 Score=43.32 Aligned_cols=54 Identities=30% Similarity=0.612 Sum_probs=34.1
Q ss_pred CCCCCCcccCC-CccCCCc-c---ccC-CCchhhhh---hHhHhHH-hhhhcccCCCCCCCCCCCccc
Q 003485 6 EKTCPLCAEEM-DLTDQQL-K---PCK-CGYEICVW---CWHHIMD-MAEKEETEGRCPACRSPYDKE 63 (816)
Q Consensus 6 d~~CPLC~Eel-D~tD~~f-~---PC~-CGYQIC~f---C~h~I~~-~~~K~~~~grCPACRr~Ydee 63 (816)
--.|+-|..|| |..|+.| | -|+ ||-+..-. =|+|-.. | ..-..||.|.++|.+.
T Consensus 68 ~a~C~~Cl~E~~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~~t~m----~~f~~C~~C~~ey~~p 131 (711)
T TIGR00143 68 VATCSDCLEEMLDKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSM----ADFPLCPDCAKEYKDP 131 (711)
T ss_pred hhhHHHHHHHhcCCCcccccCCcccccCCCCCeEEeecCCCCCCCcCC----CCCcCCHHHHHHhcCC
Confidence 35899999998 8888876 3 477 88772111 0122100 1 1246899999999543
No 238
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=26.69 E-value=40 Score=41.29 Aligned_cols=50 Identities=20% Similarity=0.639 Sum_probs=33.7
Q ss_pred CCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcccch
Q 003485 7 KTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (816)
Q Consensus 7 ~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Ydee~i 65 (816)
..||.|-... +.-.-=+||.-+|--|-....++ -.-+||.|-++++...|
T Consensus 644 LkCs~Cn~R~----Kd~vI~kC~H~FC~~Cvq~r~et-----RqRKCP~Cn~aFganDv 693 (698)
T KOG0978|consen 644 LKCSVCNTRW----KDAVITKCGHVFCEECVQTRYET-----RQRKCPKCNAAFGANDV 693 (698)
T ss_pred eeCCCccCch----hhHHHHhcchHHHHHHHHHHHHH-----hcCCCCCCCCCCCcccc
Confidence 5799997433 22233468988666666655442 46899999999986654
No 239
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=26.69 E-value=67 Score=30.76 Aligned_cols=80 Identities=15% Similarity=0.312 Sum_probs=51.8
Q ss_pred cCccccccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHh
Q 003485 101 QLSSVRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSV 180 (816)
Q Consensus 101 ~LanVRVIQrNLVYVvGLP~~IaeEDLLKk~EyFGQYGKI~KIvInrd~~g~~~q~ps~rgsAYVTFs~~EDA~rAIqaL 180 (816)
........+...+|+.+++..+..+++. ..|..+|.|..+.+....... ...+..|+.+....++..+....
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 287 (306)
T COG0724 216 RGKALLLEKSDNLYVGNLPLKTAEEELA---DLFKSRGDIVRASLPPSKDGK-----IPKSRSFVGNEASKDALESNSRG 287 (306)
T ss_pred ccccccccccceeeccccccccchhHHH---HhccccccceeeeccCCCCCc-----ccccccccchhHHHhhhhhhccc
Confidence 4444556667889999999999988876 899999999777665443321 12233346666666666666554
Q ss_pred cCCccCCe
Q 003485 181 HGFVLEGK 188 (816)
Q Consensus 181 NG~~LdGR 188 (816)
......+.
T Consensus 288 ~~~~~~~~ 295 (306)
T COG0724 288 NKKKILGR 295 (306)
T ss_pred cceeeccc
Confidence 44444333
No 240
>PF12677 DUF3797: Domain of unknown function (DUF3797); InterPro: IPR024256 This presumed domain is functionally uncharacterised. This domain family is found in bacteria and viruses, and is approximately 50 amino acids in length. There is a conserved CGN sequence motif.
Probab=26.20 E-value=28 Score=29.52 Aligned_cols=26 Identities=31% Similarity=0.994 Sum_probs=18.9
Q ss_pred CCCCCcccCC--------CccCCCc-cccCCCchh
Q 003485 7 KTCPLCAEEM--------DLTDQQL-KPCKCGYEI 32 (816)
Q Consensus 7 ~~CPLC~Eel--------D~tD~~f-~PC~CGYQI 32 (816)
..||-|-.+. .+.|.-| +.|+||+.|
T Consensus 14 ~~Cp~CGN~~vGngEG~liV~edtfkRtCkCGfni 48 (49)
T PF12677_consen 14 CKCPKCGNDKVGNGEGTLIVEEDTFKRTCKCGFNI 48 (49)
T ss_pred ccCcccCCcEeecCcceEEEeccceeeeecccccc
Confidence 4689997653 4555566 899999875
No 241
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.08 E-value=41 Score=38.66 Aligned_cols=47 Identities=28% Similarity=0.705 Sum_probs=35.0
Q ss_pred CCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcc
Q 003485 6 EKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (816)
Q Consensus 6 d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Yde 62 (816)
+-.|-+|+.-|=. --.. +||.-.|.+|.++-++ ...-||-||-+|-+
T Consensus 84 ef~c~vc~~~l~~---pv~t-pcghs~c~~Cl~r~ld------~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 84 EFECCVCSRALYP---PVVT-PCGHSFCLECLDRSLD------QETECPLCRDELVE 130 (398)
T ss_pred hhhhhhhHhhcCC---Cccc-cccccccHHHHHHHhc------cCCCCccccccccc
Confidence 4578888655521 2222 8999999999988654 56789999999976
No 242
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=24.69 E-value=28 Score=38.98 Aligned_cols=24 Identities=33% Similarity=0.761 Sum_probs=13.1
Q ss_pred CCCccccccCCCCCCCCCCccccc
Q 003485 196 TTKYCHAWLRNVPCTNPDCLYLHE 219 (816)
Q Consensus 196 TTKYCs~FLRg~~C~NpdCmYLHE 219 (816)
.+.+|.+||||.-=....|-||||
T Consensus 76 ~~~vcK~~l~glC~kgD~C~Flhe 99 (325)
T KOG1040|consen 76 GKVVCKHWLRGLCKKGDQCEFLHE 99 (325)
T ss_pred CceeehhhhhhhhhccCcCcchhh
Confidence 344566666655555555555554
No 244
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.44 E-value=58 Score=36.90 Aligned_cols=54 Identities=26% Similarity=0.637 Sum_probs=36.9
Q ss_pred CCCCCCCcccCCCccCCC-----ccccC-CCchhhhhhHhHhHHh-hhhcccCCCCCCCCCCC
Q 003485 5 GEKTCPLCAEEMDLTDQQ-----LKPCK-CGYEICVWCWHHIMDM-AEKEETEGRCPACRSPY 60 (816)
Q Consensus 5 ~d~~CPLC~EelD~tD~~-----f~PC~-CGYQIC~fC~h~I~~~-~~K~~~~grCPACRr~Y 60 (816)
.+.+|-+|||.. .++. |.--+ |-+-.|+-|...=+.. .........||-||.+-
T Consensus 160 ~~k~CGICme~i--~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 160 SEKECGICMETI--NEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred ccccceehhhhc--cccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 478999999987 4555 75555 8898888887655421 00122368899999854
No 245
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=24.42 E-value=40 Score=27.43 Aligned_cols=33 Identities=33% Similarity=0.781 Sum_probs=23.6
Q ss_pred CCCCC--CcccCCCcc---CCCcccc-CCCchhhhhhHh
Q 003485 6 EKTCP--LCAEEMDLT---DQQLKPC-KCGYEICVWCWH 38 (816)
Q Consensus 6 d~~CP--LC~EelD~t---D~~f~PC-~CGYQIC~fC~h 38 (816)
-.-|| -|-..+... +....-| .||+.+|.-|-.
T Consensus 18 ~~~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~ 56 (64)
T smart00647 18 LKWCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKV 56 (64)
T ss_pred ccCCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCC
Confidence 35698 887666554 4567889 799998777743
No 246
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.37 E-value=50 Score=36.26 Aligned_cols=55 Identities=16% Similarity=0.303 Sum_probs=43.4
Q ss_pred CCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcccchhc
Q 003485 7 KTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVG 67 (816)
Q Consensus 7 ~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Ydee~i~~ 67 (816)
-.||.|-..|.-|=.--..=+||--+|.-|-.+++. .++.||-|-+|..+..|..
T Consensus 222 yiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir------~D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 222 YICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR------KDMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred eecccchhhhcCccceEEeccCCcEeeHHHHHHhcc------ccccccCCCCcCcccceEe
Confidence 479999999964333333336999999999999974 5789999999999888864
No 247
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=24.09 E-value=68 Score=26.51 Aligned_cols=17 Identities=41% Similarity=0.974 Sum_probs=9.5
Q ss_pred cCCCCCCCCCCCcccch
Q 003485 49 TEGRCPACRSPYDKEKI 65 (816)
Q Consensus 49 ~~grCPACRr~Ydee~i 65 (816)
.+++||-|.|+++++.-
T Consensus 19 ~~~~CPlC~r~l~~e~~ 35 (54)
T PF04423_consen 19 AKGCCPLCGRPLDEEHR 35 (54)
T ss_dssp -SEE-TTT--EE-HHHH
T ss_pred CCCcCCCCCCCCCHHHH
Confidence 45599999999998753
No 248
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.41 E-value=73 Score=37.28 Aligned_cols=38 Identities=24% Similarity=0.575 Sum_probs=24.0
Q ss_pred CCCCCcccCCCccC-CCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCC
Q 003485 7 KTCPLCAEEMDLTD-QQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRS 58 (816)
Q Consensus 7 ~~CPLC~EelD~tD-~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr 58 (816)
..||-|--.|.... .+ .-.|.||-+.. ....+||.|-.
T Consensus 223 ~~C~~C~~~l~~h~~~~-------~l~Ch~Cg~~~-------~~~~~Cp~C~s 261 (505)
T TIGR00595 223 LCCPNCDVSLTYHKKEG-------KLRCHYCGYQE-------PIPKTCPQCGS 261 (505)
T ss_pred cCCCCCCCceEEecCCC-------eEEcCCCcCcC-------CCCCCCCCCCC
Confidence 46888887775432 22 33466666554 24679999976
No 249
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=23.39 E-value=38 Score=32.30 Aligned_cols=20 Identities=25% Similarity=0.659 Sum_probs=9.7
Q ss_pred CCCCcccCCCccCCCccccC
Q 003485 8 TCPLCAEEMDLTDQQLKPCK 27 (816)
Q Consensus 8 ~CPLC~EelD~tD~~f~PC~ 27 (816)
.|+-|-..+.+.+..+++||
T Consensus 72 ~C~~Cg~~~~~~~~~~~~CP 91 (114)
T PRK03681 72 WCETCQQYVTLLTQRVRRCP 91 (114)
T ss_pred EcccCCCeeecCCccCCcCc
Confidence 35555555544444444454
No 250
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=23.11 E-value=77 Score=33.95 Aligned_cols=31 Identities=13% Similarity=0.185 Sum_probs=22.3
Q ss_pred EEEEeCCHHHHHHHHHHhcCCccCCeEEEEeec
Q 003485 163 VYITYSKEEEAVRCIQSVHGFVLEGKSLKACFG 195 (816)
Q Consensus 163 AYVTFs~~EDA~rAIqaLNG~~LdGR~LRASfG 195 (816)
|||||.++.+|..|++.+..... +.+++..|
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~A 31 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPA 31 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeC
Confidence 69999999999999996554332 33354444
No 251
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.83 E-value=43 Score=38.09 Aligned_cols=35 Identities=26% Similarity=0.751 Sum_probs=27.2
Q ss_pred CCCCCcccCCCccC-CCccccCCCchhhhhhHhHhH
Q 003485 7 KTCPLCAEEMDLTD-QQLKPCKCGYEICVWCWHHIM 41 (816)
Q Consensus 7 ~~CPLC~EelD~tD-~~f~PC~CGYQIC~fC~h~I~ 41 (816)
..||.|.-.++++. =+..-|.||+|+|.-|....+
T Consensus 307 r~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~ 342 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWK 342 (384)
T ss_pred CcCcccceeeeecCCcceEEeeccccchhhcCcchh
Confidence 68999988776655 456899999998888876553
No 252
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=22.57 E-value=40 Score=32.73 Aligned_cols=25 Identities=36% Similarity=0.770 Sum_probs=16.6
Q ss_pred CCCCCcccCCCccCCCccccC-CCch
Q 003485 7 KTCPLCAEEMDLTDQQLKPCK-CGYE 31 (816)
Q Consensus 7 ~~CPLC~EelD~tD~~f~PC~-CGYQ 31 (816)
.-||-|-.++.-.|..++-|+ |||.
T Consensus 3 p~CP~C~seytY~dg~~~iCpeC~~E 28 (109)
T TIGR00686 3 PPCPKCNSEYTYHDGTQLICPSCLYE 28 (109)
T ss_pred CcCCcCCCcceEecCCeeECcccccc
Confidence 457777777766666666666 5555
No 253
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=22.24 E-value=24 Score=43.72 Aligned_cols=55 Identities=16% Similarity=0.325 Sum_probs=0.0
Q ss_pred CCccCCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcc
Q 003485 1 MSDEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (816)
Q Consensus 1 msde~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Yde 62 (816)
.+..+...||.|.--+ ..-+-.-+=+|+.-+|--|+.-+-. -..-||-||..|++
T Consensus 118 ~~~~~~~~CP~Ci~s~-~DqL~~~~k~c~H~FC~~Ci~sWsR------~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 118 VQTHVENQCPNCLKSC-NDQLEESEKHTAHYFCEECVGSWSR------CAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhhhhhHHHHHH-HHHhhccccccccccHHHHhhhhhh------hcccCchhhhhhhe
No 254
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=21.70 E-value=36 Score=39.85 Aligned_cols=38 Identities=34% Similarity=0.777 Sum_probs=31.2
Q ss_pred ccCCCCCCCcccCCCccCCCccccC-CCchhhhhhHhHhH
Q 003485 3 DEGEKTCPLCAEEMDLTDQQLKPCK-CGYEICVWCWHHIM 41 (816)
Q Consensus 3 de~d~~CPLC~EelD~tD~~f~PC~-CGYQIC~fC~h~I~ 41 (816)
|-+...||+|.+.|-+|-+.. =|. ||-.||.+|-.-|-
T Consensus 177 Ds~V~~CP~Ca~~F~l~rRrH-HCRLCG~VmC~~C~k~iS 215 (505)
T KOG1842|consen 177 DSSVQFCPECANSFGLTRRRH-HCRLCGRVMCRDCSKFIS 215 (505)
T ss_pred CCcccccccccchhhhHHHhh-hhhhcchHHHHHHHHhcC
Confidence 456689999999999976654 466 99999999998764
No 255
>PRK05580 primosome assembly protein PriA; Validated
Probab=21.58 E-value=94 Score=37.70 Aligned_cols=40 Identities=25% Similarity=0.521 Sum_probs=24.3
Q ss_pred CCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCC
Q 003485 7 KTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSP 59 (816)
Q Consensus 7 ~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~ 59 (816)
..||-|-..|...-. =+.-.|.||-+.. ....+||.|-..
T Consensus 391 ~~C~~C~~~l~~h~~------~~~l~Ch~Cg~~~-------~~~~~Cp~Cg~~ 430 (679)
T PRK05580 391 AECPHCDASLTLHRF------QRRLRCHHCGYQE-------PIPKACPECGST 430 (679)
T ss_pred cCCCCCCCceeEECC------CCeEECCCCcCCC-------CCCCCCCCCcCC
Confidence 467778777753211 1233577777654 246789999663
No 256
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.25 E-value=2.8e+02 Score=33.86 Aligned_cols=79 Identities=16% Similarity=0.186 Sum_probs=56.3
Q ss_pred cCEEEEeCCCCC-CChHHHHHHHhhhcCCc-ceeEEEEeecCCccc------cccC------------------------
Q 003485 110 RNLVYIVGLPLN-LGDEDLLQRREYFGQYG-KVLKVSMSRTAAGVI------QQFP------------------------ 157 (816)
Q Consensus 110 rNLVYVvGLP~~-IaeEDLLKk~EyFGQYG-KI~KIvInrd~~g~~------~q~p------------------------ 157 (816)
-+.|-|+||.|. +.-+||+.--.-|-.+| .|+.|.|....-|.. .+.|
T Consensus 174 T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~~ 253 (650)
T KOG2318|consen 174 TKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEEDV 253 (650)
T ss_pred cceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhhH
Confidence 367899999996 77788875445566777 999999853221100 0111
Q ss_pred ------------CCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 003485 158 ------------NNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (816)
Q Consensus 158 ------------s~rgsAYVTFs~~EDA~rAIqaLNG~~LdGR 188 (816)
-.-++|-|+|.+.+.|..--...||..|.--
T Consensus 254 ~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS 296 (650)
T KOG2318|consen 254 DREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS 296 (650)
T ss_pred HHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc
Confidence 1246889999999999999999999887643
No 257
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=20.83 E-value=45 Score=37.63 Aligned_cols=10 Identities=40% Similarity=1.092 Sum_probs=8.3
Q ss_pred cCCCCCCCCC
Q 003485 49 TEGRCPACRS 58 (816)
Q Consensus 49 ~~grCPACRr 58 (816)
-.|+||+|..
T Consensus 13 ~~g~cp~c~~ 22 (372)
T cd01121 13 WLGKCPECGE 22 (372)
T ss_pred ccEECcCCCC
Confidence 3699999976
No 258
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.60 E-value=92 Score=34.41 Aligned_cols=59 Identities=19% Similarity=0.465 Sum_probs=37.9
Q ss_pred CCCCCcccCCCccCCCc--cccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcccchhcccchhHHH
Q 003485 7 KTCPLCAEEMDLTDQQL--KPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGMAAKCERL 75 (816)
Q Consensus 7 ~~CPLC~EelD~tD~~f--~PC~CGYQIC~fC~h~I~~~~~K~~~~grCPACRr~Ydee~i~~~~~~~eel 75 (816)
-.||+=--+|.-+=+-+ ++|.| .|-...+.+ -..--|+-|..+|+++.++....+.|++
T Consensus 112 fiCPvtgleMng~~~F~~l~~CGc-----V~SerAlKe-----ikas~C~~C~a~y~~~dvIvlNg~~E~~ 172 (293)
T KOG3113|consen 112 FICPVTGLEMNGKYRFCALRCCGC-----VFSERALKE-----IKASVCHVCGAAYQEDDVIVLNGTEEDV 172 (293)
T ss_pred eecccccceecceEEEEEEeccce-----eccHHHHHH-----hhhccccccCCcccccCeEeeCCCHHHH
Confidence 46888888886443333 34444 344444433 3456799999999998877666666543
No 259
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=20.56 E-value=40 Score=28.54 Aligned_cols=39 Identities=23% Similarity=0.701 Sum_probs=21.7
Q ss_pred CccCCCCCCCcccCCCccCCCccccC-CCchhhhhhHhHhH
Q 003485 2 SDEGEKTCPLCAEEMDLTDQQLKPCK-CGYEICVWCWHHIM 41 (816)
Q Consensus 2 sde~d~~CPLC~EelD~tD~~f~PC~-CGYQIC~fC~h~I~ 41 (816)
.|.+...|.+|...|.+.-+ =.=|. ||..+|.-|.....
T Consensus 5 ~d~~~~~C~~C~~~F~~~~r-rhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 5 PDSEASNCMICGKKFSLFRR-RHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp SGGG-SB-TTT--B-BSSS--EEE-TTT--EEECCCS-EEE
T ss_pred CCCCCCcCcCcCCcCCCcee-eEccCCCCCEECCchhCCEE
Confidence 46677899999999988633 34566 89999998887553
No 260
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=20.35 E-value=59 Score=23.28 Aligned_cols=9 Identities=44% Similarity=1.364 Sum_probs=5.0
Q ss_pred CCCcccCCC
Q 003485 9 CPLCAEEMD 17 (816)
Q Consensus 9 CPLC~EelD 17 (816)
||-|-.+++
T Consensus 2 Cp~CG~~~~ 10 (23)
T PF13240_consen 2 CPNCGAEIE 10 (23)
T ss_pred CcccCCCCC
Confidence 555555554
Done!