Query 003485
Match_columns 816
No_of_seqs 223 out of 913
Neff 3.5
Searched_HMMs 29240
Date Tue Mar 26 22:12:30 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/003485.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_113-116//hhsearch_pdb/003485hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cpi_A CCR4-NOT transcription 1.0 1 1 148.7 10.9 102 101-204 6-107 (111)
2 3pgw_S U1-70K; protein-RNA com 1.0 1 1 124.1 13.7 91 103-201 95-185 (437)
3 4fxv_A ELAV-like protein 1; RN 1.0 1 1 121.4 10.5 82 107-196 16-97 (99)
4 4f25_A Polyadenylate-binding p 1.0 1 1 119.4 10.1 80 110-199 5-84 (115)
5 3s8s_A Histone-lysine N-methyl 1.0 1 1 118.8 11.0 83 108-198 4-86 (110)
6 3n9u_C Cleavage and polyadenyl 1.0 1 1 118.4 8.0 87 109-203 54-142 (156)
7 2lxi_A RNA-binding protein 10; 1.0 1 1 118.3 5.1 80 111-198 2-83 (91)
8 3q2s_C Cleavage and polyadenyl 1.0 1 1 116.7 7.7 85 109-201 67-153 (229)
9 2a3j_A U1 small nuclear ribonu 1.0 1 1 116.5 8.9 86 107-200 26-112 (127)
10 3ns6_A Eukaryotic translation 1.0 1 1 116.4 5.1 82 109-198 5-93 (100)
No 1
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=1.00 E-value=1 Score=148.71 Aligned_cols=102 Identities=43% Similarity=0.750 Sum_probs=90.7
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHH
Q ss_conf 37665644467799958999999378877786314785426999942278643446899608999939999999999995
Q 003485 101 QLSSVRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSV 180 (816)
Q Consensus 101 ~LanVRVIQKNLVYVvGLP~~IAeEDLLk~~EyFGQYGKI~KIvIsrd~~g~~~q~p~~rgsAYVTFs~~EDA~kAIqaL 180 (816)
+++++|+++++.|||.|||+.+++++|++..++|++||+|.+|.|.+++.+. ..+.++|+|||+|.+.++|.+||+.|
T Consensus 6 ~~~~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~--~~~~~~G~afV~f~~~~~A~~Ai~~l 83 (111)
T 2cpi_A 6 SGASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYA--GSQGPSASAYVTYIRSEDALRAIQCV 83 (111)
T ss_dssp SCSCCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCC--SSSCCCEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCC--CCCCCCEEEEEEECCHHHHHHHHHHH
T ss_conf 8765220688879997999877999998888886146888899984477867--66787768999978699999999981
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 598339908999650787411223
Q 003485 181 HGFVLEGKSLKACFGTTKYCHAWL 204 (816)
Q Consensus 181 DGs~LdGRvLRASfGTTKYCssFL 204 (816)
||..++||.|+|.|+++|+|+.|-
T Consensus 84 ng~~~~gr~l~V~~a~~k~~~~~~ 107 (111)
T 2cpi_A 84 NNVVVDGRTLKASLGTTKYCSYSG 107 (111)
T ss_dssp TTEEETTEEEEEESCCCCSCSSTT
T ss_pred CCCEECCEEEEEEECCCCCCCCCC
T ss_conf 998799988899964555356668
No 2
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=1.00 E-value=1 Score=124.08 Aligned_cols=91 Identities=11% Similarity=0.221 Sum_probs=78.1
Q ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCC
Q ss_conf 66564446779995899999937887778631478542699994227864344689960899993999999999999559
Q 003485 103 SSVRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHG 182 (816)
Q Consensus 103 anVRVIQKNLVYVvGLP~~IAeEDLLk~~EyFGQYGKI~KIvIsrd~~g~~~q~p~~rgsAYVTFs~~EDA~kAIqaLDG 182 (816)
..+...+.+.|||.|||+.+++++|. ++|++||+|..|.|..+..++ .+.|+|||+|.+.++|.+||..|||
T Consensus 95 ~~~~~~~~~~lfV~nL~~~~te~~L~---~~F~~~G~I~~v~i~~d~~tg-----~~kG~aFV~F~~~e~A~~Ai~~lng 166 (437)
T 3pgw_S 95 PNAQGDAFKTLFVARVNYDTTESKLR---REFEVYGPIKRIHMVYSKRSG-----KPRGYAFIEYEHERDMHSAYKHADG 166 (437)
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHH---HHHHHCCCEEEEEEECCCCCC-----CCCCEEEEEECCHHHHHHHHHHCCC
T ss_conf 44458999879984899989999999---999870986487741158889-----7351588862358999999997589
Q ss_pred CCCCCEEEEEEECCCCCCC
Q ss_conf 8339908999650787411
Q 003485 183 FVLEGKSLKACFGTTKYCH 201 (816)
Q Consensus 183 s~LdGRvLRASfGTTKYCs 201 (816)
..|+|+.|+|.|+..+-..
T Consensus 167 ~~i~gr~i~V~~a~~~~~~ 185 (437)
T 3pgw_S 167 KKIDGRRVLVDVERGRTVK 185 (437)
T ss_pred CEECCEEEEEEEECCCCCC
T ss_conf 8889988899881788888
No 3
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=121.44 Aligned_cols=82 Identities=21% Similarity=0.392 Sum_probs=74.3
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCC
Q ss_conf 44467799958999999378877786314785426999942278643446899608999939999999999995598339
Q 003485 107 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (816)
Q Consensus 107 VIQKNLVYVvGLP~~IAeEDLLk~~EyFGQYGKI~KIvIsrd~~g~~~q~p~~rgsAYVTFs~~EDA~kAIqaLDGs~Ld 186 (816)
-.|.+.|||.|||+.+++++|. ++|++||+|..|.|.+++.++ .++|+|||+|.+.++|.+||+.+||..++
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~---~~F~~~G~I~~v~i~~d~~tg-----~~kG~afV~f~~~~~A~~Ai~~lng~~~~ 87 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELR---SLFSSIGEVESAKLIRDKVAG-----HSLGYGFVNYVTAKDAERAINTLNGLRLQ 87 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHH---HHHHTTSCEEEEEEEECSSSC-----CEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEECCCCCCCHHHHH---HHHHHCCCEEEEEEEECCCCC-----CCCCCEEEEECCHHHHHHHHHHHCCCEEC
T ss_conf 0789999993999989999999---999714988886754538889-----50621899987999999999984899899
Q ss_pred CEEEEEEECC
Q ss_conf 9089996507
Q 003485 187 GKSLKACFGT 196 (816)
Q Consensus 187 GRvLRASfGT 196 (816)
||.|+|.|+.
T Consensus 88 gr~l~V~~Ak 97 (99)
T 4fxv_A 88 SKTIKVSYAR 97 (99)
T ss_dssp TEECEEEECC
T ss_pred CEEEEEEEEE
T ss_conf 9998999701
No 4
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=1.00 E-value=1 Score=119.43 Aligned_cols=80 Identities=16% Similarity=0.366 Sum_probs=72.3
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCEE
Q ss_conf 67799958999999378877786314785426999942278643446899608999939999999999995598339908
Q 003485 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (816)
Q Consensus 110 KNLVYVvGLP~~IAeEDLLk~~EyFGQYGKI~KIvIsrd~~g~~~q~p~~rgsAYVTFs~~EDA~kAIqaLDGs~LdGRv 189 (816)
.+.|||.|||+.+++++|. ++|++||+|..|.|.+++.+ ++|+|||+|.+.++|.+||+.|||..++||.
T Consensus 5 ~~~lfV~nLp~~~te~~L~---~~F~~~G~v~~v~i~~d~~~-------~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~ 74 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALY---DTFSAFGNILSCKVVCDENG-------SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 74 (115)
T ss_dssp CCEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEEETTE-------EEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEECCCCCCCCHHHHH---HHHHCCCCEEEEEEEECCCC-------CCCEEEEEECCHHHHHHHHHHCCCCEECCEE
T ss_conf 9899988899988999999---99822697778887633899-------8863899989999999999983998889999
Q ss_pred EEEEECCCCC
Q ss_conf 9996507874
Q 003485 190 LKACFGTTKY 199 (816)
Q Consensus 190 LRASfGTTKY 199 (816)
|+|.++..+.
T Consensus 75 i~V~~a~~~~ 84 (115)
T 4f25_A 75 VFVGRFKSRK 84 (115)
T ss_dssp CEEEESSCCC
T ss_pred EEEEECCCCC
T ss_conf 7999888864
No 5
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=118.76 Aligned_cols=83 Identities=16% Similarity=0.167 Sum_probs=74.5
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCC
Q ss_conf 44677999589999993788777863147854269999422786434468996089999399999999999955983399
Q 003485 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (816)
Q Consensus 108 IQKNLVYVvGLP~~IAeEDLLk~~EyFGQYGKI~KIvIsrd~~g~~~q~p~~rgsAYVTFs~~EDA~kAIqaLDGs~LdG 187 (816)
...+.|||.||++.+++++|. ++|++||+|.+|.|.++..+. .++|+|||+|.+.++|.+||+.|||..++|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~---~~F~~~G~i~~v~i~~d~~tg-----~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g 75 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLK---DMCRKYGEVEEVEILLHPRTR-----KHLGLARVLFTSTRGAKETVKNLHLTSVMG 75 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHH---HHHTTTSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEECCCCCCCHHHHH---HHHHHCCCEEEEEEEECCCCC-----CEEEEEEEEECCHHHHHHHHHHHCCCEECC
T ss_conf 998389997999999999999---999856974489997779999-----460699999897999999999848998898
Q ss_pred EEEEEEECCCC
Q ss_conf 08999650787
Q 003485 188 KSLKACFGTTK 198 (816)
Q Consensus 188 RvLRASfGTTK 198 (816)
|.|+|.++..+
T Consensus 76 r~i~V~~a~~~ 86 (110)
T 3s8s_A 76 NIIHAQLDIKG 86 (110)
T ss_dssp EECEEEECSTT
T ss_pred EEEEEEECCCC
T ss_conf 08999988887
No 6
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=1.00 E-value=1 Score=118.39 Aligned_cols=87 Identities=16% Similarity=0.269 Sum_probs=76.8
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCC--CEEEEEEEECCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCC
Q ss_conf 467799958999999378877786314785--426999942278643446899608999939999999999995598339
Q 003485 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYG--KVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (816)
Q Consensus 109 QKNLVYVvGLP~~IAeEDLLk~~EyFGQYG--KI~KIvIsrd~~g~~~q~p~~rgsAYVTFs~~EDA~kAIqaLDGs~Ld 186 (816)
....|||+|||+.+++++|. ++|++|| +|..|.|.+++.++ .++|+|||+|.+.++|.+||..|||..++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~---~~F~~~G~i~v~~v~i~~d~~tg-----~skGfaFV~f~~~~~A~~Ai~~lng~~~~ 125 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLI---QVIRSIGVYDVVELKFAENRANG-----QSKGYAEVVVASENSVHKLLELLPGKVLN 125 (156)
T ss_dssp --CEEEEECCCTTCCHHHHH---HHHHHTTCCCEEEEEEEECTTTC-----CEEEEEEEEESCHHHHHHHHHHSTTCEET
T ss_pred CCCEEEEECCCCCCCHHHHH---HHHHHHCCCCEEEEEEEECCCCC-----CCCEEEEEEECCHHHHHHHHHHCCCCEEC
T ss_conf 99889994899989999999---99998799617999987449999-----52528999979899999999986999789
Q ss_pred CEEEEEEECCCCCCCCC
Q ss_conf 90899965078741122
Q 003485 187 GKSLKACFGTTKYCHAW 203 (816)
Q Consensus 187 GRvLRASfGTTKYCssF 203 (816)
||.|+|.+++.+....|
T Consensus 126 Gr~l~V~~a~~~~~~~~ 142 (156)
T 3n9u_C 126 GEKVDVRPATRQNLSQF 142 (156)
T ss_dssp TEECEEEECCHHHHHHH
T ss_pred CEEEEEEECCCCCCHHH
T ss_conf 93769988477730245
No 7
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=118.26 Aligned_cols=80 Identities=16% Similarity=0.328 Sum_probs=71.8
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCC-CEEEEEEEECCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHC-CCCCCCE
Q ss_conf 7799958999999378877786314785-4269999422786434468996089999399999999999955-9833990
Q 003485 111 NLVYIVGLPLNLGDEDLLQRREYFGQYG-KVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVH-GFVLEGK 188 (816)
Q Consensus 111 NLVYVvGLP~~IAeEDLLk~~EyFGQYG-KI~KIvIsrd~~g~~~q~p~~rgsAYVTFs~~EDA~kAIqaLD-Gs~LdGR 188 (816)
|.|||.|||+.+++++|. ++|++|| +|..|.|.+++.++ .++|+|||+|.+.++|.+||+.++ +..++||
T Consensus 2 ~~i~v~nLp~~~te~~l~---~~F~~~G~~v~~v~i~~d~~t~-----~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr 73 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIR---GQLQSHGVQAREVRLMRNKSSG-----QSRGFAFVEFSHLQDATRWMEANQHSLNILGQ 73 (91)
T ss_dssp CEEEEETCCSSCCHHHHH---HHHHHHTCCCSBCCSSSCSSSC-----CCSSEEEEECSSHHHHHHHHHTTTTEEEETTE
T ss_pred CEEEEECCCCCCCHHHHH---HHHHHHCCEEEEEEEEECCCCC-----CCCCEEEEEECCHHHHHHHHHHCCCCEEECCE
T ss_conf 999994999999999999---8998749875899998549999-----85752899964999999999962799089999
Q ss_pred EEEEEECCCC
Q ss_conf 8999650787
Q 003485 189 SLKACFGTTK 198 (816)
Q Consensus 189 vLRASfGTTK 198 (816)
.|++.|+..|
T Consensus 74 ~i~V~~a~~~ 83 (91)
T 2lxi_A 74 KVSMHYSDPK 83 (91)
T ss_dssp EEEEECCCSC
T ss_pred EEEEEECCCC
T ss_conf 9999985899
No 8
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=1.00 E-value=1 Score=116.70 Aligned_cols=85 Identities=18% Similarity=0.196 Sum_probs=75.8
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCC--CEEEEEEEECCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCC
Q ss_conf 467799958999999378877786314785--426999942278643446899608999939999999999995598339
Q 003485 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYG--KVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (816)
Q Consensus 109 QKNLVYVvGLP~~IAeEDLLk~~EyFGQYG--KI~KIvIsrd~~g~~~q~p~~rgsAYVTFs~~EDA~kAIqaLDGs~Ld 186 (816)
....|||.||++.+++++|. ++|.+|| +|.+|.|.+++.+. .++++|||+|.+.++|.+||..|||..|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~---~~F~~~G~~~v~~v~i~~d~~tg-----~skGfaFV~f~~~~~a~~Ai~~lng~~~~ 138 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLT---EAVHSLGVNDILEIKFFENRANG-----QSKGFALVGVGSEASSKKLMDLLPKRELH 138 (229)
T ss_dssp --CEEEEESCCTTCCHHHHH---HHHHTTTCCCEEEEEEEECTTTC-----CEEEEEEEEESCTTHHHHHHTTSTTSCBT
T ss_pred CCCEEEEECCCCCCCHHHHH---HHHHHHCCCCEEEEEEEECCCCC-----CCCEEEEEEECCHHHHHHHHHHCCCCEEC
T ss_conf 84089985989989999999---99998789635899987548999-----50538999979899999999985898679
Q ss_pred CEEEEEEECCCCCCC
Q ss_conf 908999650787411
Q 003485 187 GKSLKACFGTTKYCH 201 (816)
Q Consensus 187 GRvLRASfGTTKYCs 201 (816)
||.|+|.|+..+...
T Consensus 139 Gr~l~V~~a~~~~~~ 153 (229)
T 3q2s_C 139 GQNPVVTPVNKQFLS 153 (229)
T ss_dssp TBCCEEEECCHHHHH
T ss_pred CEEEEEEECCCCCCC
T ss_conf 988699877777654
No 9
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=116.54 Aligned_cols=86 Identities=19% Similarity=0.355 Sum_probs=72.8
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHH-HHHHCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCC
Q ss_conf 444677999589999993788777-8631478542699994227864344689960899993999999999999559833
Q 003485 107 VIQRNLVYIVGLPLNLGDEDLLQR-REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (816)
Q Consensus 107 VIQKNLVYVvGLP~~IAeEDLLk~-~EyFGQYGKI~KIvIsrd~~g~~~q~p~~rgsAYVTFs~~EDA~kAIqaLDGs~L 185 (816)
....+.|||+|||+.+++++|.+. +++|++||+|.+|.|.++. .++|+|||+|.+.++|.+||..|||..+
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~--------~~rG~aFV~F~~~~~A~~Ai~~lng~~l 97 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSD--------DNSGKAYIVFATQESAQAFVEAFQGYPF 97 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCC--------SSCCCEEEEESSHHHHHHHHHHSTTCCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCC--------CCCCEEEEEECCHHHHHHHHHHHCCCEE
T ss_conf 99988899959998799999999999984257875899963599--------9677799997989999999999789885
Q ss_pred CCEEEEEEECCCCCC
Q ss_conf 990899965078741
Q 003485 186 EGKSLKACFGTTKYC 200 (816)
Q Consensus 186 dGRvLRASfGTTKYC 200 (816)
+||.|+|.|+..+--
T Consensus 98 ~gr~l~V~~a~~~~~ 112 (127)
T 2a3j_A 98 QGNPLVITFSETPQS 112 (127)
T ss_dssp TTSCCEEEECCCCCH
T ss_pred CCCEEEEEECCCCCH
T ss_conf 797889998248500
No 10
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=1.00 E-value=1 Score=116.40 Aligned_cols=82 Identities=18% Similarity=0.249 Sum_probs=72.9
Q ss_pred CCCEEEEECCCC------CCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCC
Q ss_conf 467799958999------99937887778631478542699994227864344689960899993999999999999559
Q 003485 109 QRNLVYIVGLPL------NLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHG 182 (816)
Q Consensus 109 QKNLVYVvGLP~------~IAeEDLLk~~EyFGQYGKI~KIvIsrd~~g~~~q~p~~rgsAYVTFs~~EDA~kAIqaLDG 182 (816)
..++|||.|||+ .+.+++|. ++|++||+|..|.|.+++.++ .++|+|||+|.+.++|.+||+.+||
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~---~~F~~~G~i~~v~i~~d~~tg-----~~kG~afV~f~~~~~A~~Ai~~lng 76 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALT---SLFSKAGKVVNMEFPIDEATG-----KTKGFLFVECGSMNDAKKIIKSFHG 76 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHH---HHHHTTSCEEEEECCEETTTT-----EECSEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH---HHHHHCCCEEEEEEEECCCCC-----CCCEEEEEEECCHHHHHHHHHHHCC
T ss_conf 67589995998687577888999999---999855987699977758999-----6122999998999999999999479
Q ss_pred CCCCC-EEEEEEECCCC
Q ss_conf 83399-08999650787
Q 003485 183 FVLEG-KSLKACFGTTK 198 (816)
Q Consensus 183 s~LdG-RvLRASfGTTK 198 (816)
..++| |.|+|.++..+
T Consensus 77 ~~~~g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 77 KRLDLKHRLFLYTMKDV 93 (100)
T ss_dssp CBSSSSCBCEEEESHHH
T ss_pred CCCCCCEEEEEEECCHH
T ss_conf 66389707999987605
Done!