Query 003487
Match_columns 816
No_of_seqs 24 out of 26
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 00:22:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003487.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003487hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02168 SMC_prok_B chromosom 98.2 0.0027 5.9E-08 73.3 30.5 165 460-624 677-841 (1179)
2 TIGR02168 SMC_prok_B chromosom 98.0 0.0062 1.3E-07 70.4 30.5 156 461-616 685-840 (1179)
3 TIGR02169 SMC_prok_A chromosom 98.0 0.018 3.9E-07 67.2 32.8 47 460-506 237-283 (1164)
4 TIGR02169 SMC_prok_A chromosom 97.9 0.0027 5.9E-08 73.8 24.0 7 687-694 653-659 (1164)
5 PRK02224 chromosome segregatio 97.8 0.021 4.4E-07 66.4 30.3 76 461-536 259-341 (880)
6 COG1196 Smc Chromosome segrega 97.6 0.089 1.9E-06 64.1 31.8 48 704-751 870-917 (1163)
7 PRK02224 chromosome segregatio 97.5 0.017 3.7E-07 67.0 23.0 156 461-625 483-638 (880)
8 KOG0161 Myosin class II heavy 97.5 0.044 9.6E-07 70.0 27.9 238 483-758 889-1144(1930)
9 PRK11637 AmiB activator; Provi 97.4 0.045 9.7E-07 59.6 23.8 79 457-535 44-122 (428)
10 COG1196 Smc Chromosome segrega 97.3 0.036 7.8E-07 67.4 23.7 27 459-485 694-720 (1163)
11 PF09730 BicD: Microtubule-ass 97.3 0.65 1.4E-05 55.2 32.9 171 451-624 256-457 (717)
12 PF07888 CALCOCO1: Calcium bin 97.2 0.06 1.3E-06 61.8 22.7 153 465-624 141-300 (546)
13 KOG0250 DNA repair protein RAD 97.1 0.066 1.4E-06 65.1 22.4 136 484-619 298-441 (1074)
14 PF08317 Spc7: Spc7 kinetochor 97.1 0.04 8.7E-07 58.5 18.6 76 466-541 155-234 (325)
15 PRK11637 AmiB activator; Provi 97.0 0.16 3.4E-06 55.5 22.8 76 460-535 54-129 (428)
16 KOG0161 Myosin class II heavy 97.0 0.06 1.3E-06 68.9 21.6 156 466-628 1371-1540(1930)
17 PF09726 Macoilin: Transmembra 97.0 1.3 2.8E-05 52.5 36.5 168 456-623 414-610 (697)
18 PF07888 CALCOCO1: Calcium bin 97.0 0.11 2.4E-06 59.7 21.6 64 463-526 160-223 (546)
19 PHA02562 46 endonuclease subun 97.0 0.14 3.1E-06 56.3 21.8 67 460-526 174-244 (562)
20 TIGR00606 rad50 rad50. This fa 96.8 0.093 2E-06 64.7 21.0 78 460-541 857-934 (1311)
21 PF15070 GOLGA2L5: Putative go 96.8 0.63 1.4E-05 54.3 26.1 228 467-749 143-391 (617)
22 PHA02562 46 endonuclease subun 96.8 0.27 5.9E-06 54.1 22.2 160 457-616 178-374 (562)
23 TIGR00606 rad50 rad50. This fa 96.7 0.77 1.7E-05 56.9 27.6 161 464-625 699-868 (1311)
24 TIGR01843 type_I_hlyD type I s 96.6 0.42 9.2E-06 50.0 21.6 133 496-632 131-282 (423)
25 PRK09039 hypothetical protein; 96.6 0.26 5.6E-06 53.3 20.0 67 547-613 112-178 (343)
26 smart00787 Spc7 Spc7 kinetocho 96.6 0.18 3.8E-06 54.3 18.4 10 450-459 101-110 (312)
27 PF12718 Tropomyosin_1: Tropom 96.5 0.38 8.3E-06 46.5 18.4 126 486-615 12-137 (143)
28 COG1579 Zn-ribbon protein, pos 96.4 0.52 1.1E-05 49.6 20.4 102 469-570 12-122 (239)
29 KOG0980 Actin-binding protein 96.4 0.87 1.9E-05 55.1 24.4 64 464-527 334-397 (980)
30 KOG0612 Rho-associated, coiled 96.4 0.27 5.9E-06 60.7 20.8 164 457-623 462-646 (1317)
31 TIGR02680 conserved hypothetic 96.4 4.6 9.9E-05 51.0 32.3 111 448-563 208-323 (1353)
32 PF05701 WEMBL: Weak chloropla 96.4 0.76 1.7E-05 52.1 22.8 122 503-624 282-417 (522)
33 TIGR01843 type_I_hlyD type I s 96.3 0.95 2.1E-05 47.5 21.8 90 512-602 140-233 (423)
34 PRK03918 chromosome segregatio 96.3 0.77 1.7E-05 53.5 22.9 84 530-613 612-700 (880)
35 PF04111 APG6: Autophagy prote 96.2 0.058 1.3E-06 57.6 12.3 118 462-615 11-128 (314)
36 PRK03918 chromosome segregatio 96.2 1.2 2.6E-05 51.9 23.7 27 544-570 252-278 (880)
37 PF12718 Tropomyosin_1: Tropom 96.1 0.57 1.2E-05 45.3 17.7 131 491-625 3-133 (143)
38 PRK04778 septation ring format 96.1 0.54 1.2E-05 53.6 20.1 146 479-624 315-465 (569)
39 PF09755 DUF2046: Uncharacteri 96.1 2.9 6.2E-05 45.8 31.8 41 463-503 23-63 (310)
40 PF15619 Lebercilin: Ciliary p 96.1 1.9 4.2E-05 43.8 22.6 161 460-624 19-188 (194)
41 PF04156 IncA: IncA protein; 96.0 0.25 5.3E-06 47.9 14.7 64 508-571 87-150 (191)
42 PF00038 Filament: Intermediat 95.9 2.5 5.4E-05 43.8 23.0 35 711-745 262-296 (312)
43 PF09726 Macoilin: Transmembra 95.9 0.61 1.3E-05 55.1 19.7 159 466-624 417-597 (697)
44 PF14662 CCDC155: Coiled-coil 95.9 2.5 5.4E-05 43.6 21.5 158 462-626 10-191 (193)
45 PRK04863 mukB cell division pr 95.8 0.97 2.1E-05 57.4 22.0 135 494-633 354-490 (1486)
46 PRK09039 hypothetical protein; 95.7 2 4.4E-05 46.6 21.3 57 535-598 121-177 (343)
47 PRK10361 DNA recombination pro 95.7 1.2 2.6E-05 50.8 20.2 128 487-615 39-180 (475)
48 COG1842 PspA Phage shock prote 95.6 1.2 2.5E-05 46.3 18.4 115 461-598 25-139 (225)
49 PRK04778 septation ring format 95.6 1.6 3.5E-05 49.8 21.2 165 458-624 254-421 (569)
50 COG1579 Zn-ribbon protein, pos 95.6 0.54 1.2E-05 49.4 15.9 115 511-625 12-135 (239)
51 PF08317 Spc7: Spc7 kinetochor 95.6 2.5 5.3E-05 45.3 21.1 60 450-518 106-179 (325)
52 PRK04863 mukB cell division pr 95.5 0.71 1.5E-05 58.5 19.3 101 504-604 385-488 (1486)
53 TIGR02680 conserved hypothetic 95.4 2.5 5.5E-05 53.1 23.4 51 708-759 1083-1133(1353)
54 PF08614 ATG16: Autophagy prot 95.4 0.17 3.6E-06 50.2 11.0 116 460-575 74-189 (194)
55 PF00261 Tropomyosin: Tropomyo 95.3 3.9 8.5E-05 41.9 22.8 45 462-506 3-47 (237)
56 PF08614 ATG16: Autophagy prot 95.3 0.069 1.5E-06 52.8 8.0 27 497-523 19-45 (194)
57 KOG0250 DNA repair protein RAD 95.3 1.8 3.8E-05 53.5 20.9 166 458-624 233-432 (1074)
58 PF00038 Filament: Intermediat 95.1 4.8 0.0001 41.8 24.3 34 460-493 54-87 (312)
59 PF07111 HCR: Alpha helical co 95.1 1.7 3.7E-05 51.7 19.6 106 514-625 138-274 (739)
60 KOG0933 Structural maintenance 95.0 2.5 5.4E-05 52.1 20.9 164 459-625 740-931 (1174)
61 smart00787 Spc7 Spc7 kinetocho 94.9 4.5 9.8E-05 43.8 20.7 40 467-506 151-190 (312)
62 PF10186 Atg14: UV radiation r 94.9 3.1 6.6E-05 42.0 18.3 26 461-486 21-46 (302)
63 PF12128 DUF3584: Protein of u 94.8 15 0.00033 45.8 30.1 56 704-759 607-662 (1201)
64 PF05911 DUF869: Plant protein 94.8 1.8 3.9E-05 52.0 18.9 121 464-584 96-226 (769)
65 PRK09841 cryptic autophosphory 94.7 0.82 1.8E-05 53.4 15.9 68 500-572 258-325 (726)
66 KOG0933 Structural maintenance 94.7 1.5 3.3E-05 53.8 18.2 147 454-600 781-934 (1174)
67 COG4372 Uncharacterized protei 94.7 0.76 1.7E-05 51.7 14.6 104 510-620 75-178 (499)
68 TIGR01000 bacteriocin_acc bact 94.6 7.7 0.00017 43.0 22.1 75 559-633 237-328 (457)
69 TIGR01000 bacteriocin_acc bact 94.6 7.5 0.00016 43.0 22.0 54 575-628 239-312 (457)
70 KOG0979 Structural maintenance 94.6 3.1 6.6E-05 51.3 20.2 176 449-627 142-359 (1072)
71 PF13166 AAA_13: AAA domain 94.5 3.5 7.6E-05 47.2 19.9 110 504-615 324-446 (712)
72 PF10168 Nup88: Nuclear pore c 94.5 6.4 0.00014 47.0 22.4 51 493-543 541-592 (717)
73 PF00261 Tropomyosin: Tropomyo 94.5 4.9 0.00011 41.2 18.9 27 544-570 127-153 (237)
74 PF04111 APG6: Autophagy prote 94.5 0.47 1E-05 50.8 12.2 115 509-624 9-123 (314)
75 PF12128 DUF3584: Protein of u 94.4 19 0.00041 45.1 29.3 62 510-571 636-698 (1201)
76 KOG0971 Microtubule-associated 94.3 3.8 8.2E-05 50.3 19.9 101 510-616 326-440 (1243)
77 PF10174 Cast: RIM-binding pro 94.3 2.8 6.2E-05 50.4 19.0 152 465-625 1-167 (775)
78 PF05622 HOOK: HOOK protein; 94.1 0.014 3E-07 67.5 0.0 157 464-624 197-401 (713)
79 PF09789 DUF2353: Uncharacteri 94.0 2 4.3E-05 47.0 15.9 91 475-567 66-156 (319)
80 TIGR03007 pepcterm_ChnLen poly 93.9 9.9 0.00021 42.0 21.2 37 532-568 256-292 (498)
81 PF05700 BCAS2: Breast carcino 93.9 2.6 5.6E-05 43.0 15.5 93 494-596 119-213 (221)
82 COG4942 Membrane-bound metallo 93.8 9.8 0.00021 43.3 21.0 35 462-496 89-124 (420)
83 PF10186 Atg14: UV radiation r 93.8 5.5 0.00012 40.2 17.5 13 688-700 222-234 (302)
84 KOG0996 Structural maintenance 93.7 8 0.00017 48.6 21.5 153 462-614 414-584 (1293)
85 KOG0995 Centromere-associated 93.7 12 0.00026 44.1 21.8 58 706-763 448-512 (581)
86 PF14197 Cep57_CLD_2: Centroso 93.7 0.53 1.1E-05 41.1 8.8 63 507-569 3-65 (69)
87 KOG0994 Extracellular matrix g 93.6 5.1 0.00011 50.3 19.6 127 460-616 1164-1290(1758)
88 PF04012 PspA_IM30: PspA/IM30 93.6 7.1 0.00015 39.0 17.8 32 463-494 26-57 (221)
89 PF05622 HOOK: HOOK protein; 93.6 0.02 4.4E-07 66.2 0.0 76 546-621 334-412 (713)
90 PF13851 GAS: Growth-arrest sp 93.5 9.7 0.00021 38.8 18.8 44 459-502 8-51 (201)
91 PF04849 HAP1_N: HAP1 N-termin 93.3 5.2 0.00011 43.8 17.3 31 457-487 157-187 (306)
92 PF13514 AAA_27: AAA domain 93.3 12 0.00025 46.2 22.2 48 586-633 452-499 (1111)
93 KOG0994 Extracellular matrix g 93.3 11 0.00024 47.6 21.6 62 495-556 1605-1666(1758)
94 PF04156 IncA: IncA protein; 93.3 3.8 8.2E-05 39.8 14.9 33 491-523 91-123 (191)
95 PF09789 DUF2353: Uncharacteri 93.2 2.2 4.9E-05 46.6 14.6 87 461-547 66-171 (319)
96 cd07651 F-BAR_PombeCdc15_like 93.2 10 0.00022 38.5 18.4 134 479-618 58-206 (236)
97 KOG1103 Predicted coiled-coil 93.2 13 0.00029 41.9 20.5 66 476-541 105-171 (561)
98 KOG0971 Microtubule-associated 93.2 7.6 0.00016 47.9 19.8 124 504-628 405-546 (1243)
99 PRK11281 hypothetical protein; 93.0 2.8 6E-05 52.2 16.6 14 555-568 196-209 (1113)
100 PF10174 Cast: RIM-binding pro 92.9 13 0.00028 45.1 21.4 164 453-616 217-387 (775)
101 KOG4674 Uncharacterized conser 92.8 12 0.00026 48.9 21.9 161 461-628 1175-1381(1822)
102 PF06160 EzrA: Septation ring 92.8 13 0.00029 42.8 20.6 141 479-624 311-461 (560)
103 KOG4674 Uncharacterized conser 92.7 12 0.00026 48.9 21.7 155 461-615 81-260 (1822)
104 TIGR03007 pepcterm_ChnLen poly 92.7 5.7 0.00012 43.8 17.0 34 461-494 198-231 (498)
105 PF05667 DUF812: Protein of un 92.7 14 0.0003 43.5 20.7 91 470-560 324-417 (594)
106 KOG4673 Transcription factor T 92.6 30 0.00066 42.0 27.5 61 714-774 587-647 (961)
107 PF04849 HAP1_N: HAP1 N-termin 92.6 8.1 0.00018 42.3 17.5 63 459-528 61-123 (306)
108 KOG0243 Kinesin-like protein [ 92.5 6.9 0.00015 48.6 18.7 131 483-624 443-584 (1041)
109 KOG0977 Nuclear envelope prote 92.5 5.2 0.00011 46.7 16.9 61 705-765 322-387 (546)
110 KOG1853 LIS1-interacting prote 92.5 19 0.00041 39.3 24.6 25 600-624 157-181 (333)
111 PRK10476 multidrug resistance 92.4 3.2 6.9E-05 43.8 14.1 25 609-633 192-220 (346)
112 KOG0999 Microtubule-associated 92.4 12 0.00027 44.2 19.5 153 459-613 7-162 (772)
113 KOG0976 Rho/Rac1-interacting s 92.4 9.2 0.0002 46.8 18.9 139 465-603 321-480 (1265)
114 KOG0982 Centrosomal protein Nu 92.3 8.3 0.00018 44.2 17.7 115 493-616 248-369 (502)
115 PF12795 MscS_porin: Mechanose 92.3 11 0.00023 38.6 17.2 155 459-613 37-212 (240)
116 PF13514 AAA_27: AAA domain 92.1 15 0.00031 45.4 20.9 33 509-541 801-833 (1111)
117 KOG4593 Mitotic checkpoint pro 92.1 19 0.00042 43.3 20.9 113 512-625 161-293 (716)
118 cd07647 F-BAR_PSTPIP The F-BAR 92.0 16 0.00035 37.5 18.2 130 478-613 57-202 (239)
119 KOG4643 Uncharacterized coiled 91.8 5.7 0.00012 49.2 16.6 228 506-755 202-480 (1195)
120 PRK11281 hypothetical protein; 91.7 47 0.001 42.0 27.3 47 512-558 131-177 (1113)
121 KOG1029 Endocytic adaptor prot 91.6 14 0.00031 45.0 19.3 145 584-770 463-620 (1118)
122 KOG4673 Transcription factor T 91.5 23 0.0005 42.9 20.6 96 465-560 521-635 (961)
123 PRK01156 chromosome segregatio 91.5 31 0.00068 41.2 22.3 70 528-597 627-706 (895)
124 PF00769 ERM: Ezrin/radixin/mo 91.5 3.6 7.8E-05 42.9 13.0 99 510-615 13-111 (246)
125 COG0419 SbcC ATPase involved i 91.2 36 0.00078 41.2 22.5 19 510-528 601-619 (908)
126 TIGR01010 BexC_CtrB_KpsE polys 91.2 11 0.00023 40.4 16.5 63 509-571 170-234 (362)
127 KOG0978 E3 ubiquitin ligase in 91.1 27 0.00059 42.1 20.9 147 461-607 401-573 (698)
128 PLN03188 kinesin-12 family pro 91.0 4 8.7E-05 51.4 14.7 68 476-563 1099-1167(1320)
129 PF07926 TPR_MLP1_2: TPR/MLP1/ 91.0 14 0.00031 34.9 17.7 32 594-625 99-130 (132)
130 TIGR01005 eps_transp_fam exopo 90.6 19 0.00041 42.2 19.1 22 605-626 381-402 (754)
131 PF00769 ERM: Ezrin/radixin/mo 90.6 9.6 0.00021 39.9 15.1 50 704-756 186-241 (246)
132 KOG0964 Structural maintenance 90.6 26 0.00056 43.8 20.3 153 481-633 230-383 (1200)
133 PRK15422 septal ring assembly 90.4 1.8 4E-05 39.3 8.5 67 562-628 8-74 (79)
134 PRK11519 tyrosine kinase; Prov 90.4 11 0.00023 44.5 16.9 9 617-625 387-395 (719)
135 PF12325 TMF_TATA_bd: TATA ele 90.3 8.9 0.00019 36.8 13.4 63 506-568 13-78 (120)
136 cd07671 F-BAR_PSTPIP1 The F-BA 90.2 22 0.00048 37.1 17.4 116 488-613 78-202 (242)
137 KOG0996 Structural maintenance 90.2 31 0.00067 43.8 20.8 100 499-598 388-491 (1293)
138 KOG0976 Rho/Rac1-interacting s 90.1 37 0.00079 42.0 20.7 61 696-765 455-521 (1265)
139 PF09744 Jnk-SapK_ap_N: JNK_SA 90.1 9.6 0.00021 38.0 13.9 32 597-628 86-117 (158)
140 COG0419 SbcC ATPase involved i 90.0 53 0.0011 39.8 31.1 39 587-625 404-442 (908)
141 cd07655 F-BAR_PACSIN The F-BAR 89.9 28 0.0006 36.4 19.0 130 478-617 61-223 (258)
142 PF09755 DUF2046: Uncharacteri 89.9 36 0.00078 37.7 21.4 119 507-625 133-279 (310)
143 TIGR00998 8a0101 efflux pump m 89.8 14 0.00031 38.2 15.6 26 610-635 189-218 (334)
144 PF05557 MAD: Mitotic checkpoi 89.7 0.1 2.2E-06 60.6 0.0 17 791-807 639-655 (722)
145 PF02050 FliJ: Flagellar FliJ 89.6 13 0.00027 32.1 13.4 56 551-613 45-100 (123)
146 PF14662 CCDC155: Coiled-coil 89.6 29 0.00062 36.2 17.4 23 705-727 166-188 (193)
147 KOG0980 Actin-binding protein 89.6 64 0.0014 40.2 22.5 25 706-730 684-708 (980)
148 PF10473 CENP-F_leu_zip: Leuci 89.5 23 0.0005 35.0 17.1 79 511-589 19-97 (140)
149 TIGR03017 EpsF chain length de 89.5 35 0.00077 37.1 24.7 34 508-541 170-203 (444)
150 PF05701 WEMBL: Weak chloropla 89.5 46 0.00099 38.3 22.6 119 480-598 287-412 (522)
151 PF11932 DUF3450: Protein of u 89.1 10 0.00022 39.1 13.8 62 480-541 34-95 (251)
152 PF11932 DUF3450: Protein of u 89.0 22 0.00048 36.6 16.2 62 463-524 38-99 (251)
153 PF15070 GOLGA2L5: Putative go 89.0 35 0.00076 40.5 19.5 94 463-567 83-176 (617)
154 COG4942 Membrane-bound metallo 88.8 50 0.0011 37.9 22.6 24 462-485 47-70 (420)
155 PF09731 Mitofilin: Mitochondr 88.7 43 0.00093 38.2 19.6 29 460-488 258-287 (582)
156 KOG0288 WD40 repeat protein Ti 88.6 10 0.00022 43.4 14.2 18 491-508 13-30 (459)
157 KOG0249 LAR-interacting protei 88.6 9.8 0.00021 46.0 14.7 41 674-720 346-387 (916)
158 KOG0982 Centrosomal protein Nu 88.5 23 0.00051 40.8 16.9 143 474-625 215-364 (502)
159 PRK10246 exonuclease subunit S 88.4 75 0.0016 39.5 23.8 14 461-474 531-544 (1047)
160 TIGR03794 NHPM_micro_HlyD NHPM 88.2 40 0.00086 36.9 18.2 33 600-632 227-264 (421)
161 PF14915 CCDC144C: CCDC144C pr 88.1 47 0.001 36.8 21.4 150 463-616 102-269 (305)
162 cd07653 F-BAR_CIP4-like The F- 88.1 32 0.0007 34.8 17.5 133 478-613 62-211 (251)
163 PF01576 Myosin_tail_1: Myosin 88.0 0.15 3.3E-06 60.9 0.0 126 492-624 353-478 (859)
164 PRK10929 putative mechanosensi 88.0 45 0.00098 42.2 20.4 62 551-612 173-234 (1109)
165 PRK10884 SH3 domain-containing 87.8 5.7 0.00012 40.9 11.0 11 604-614 157-167 (206)
166 PF15619 Lebercilin: Ciliary p 87.8 35 0.00076 35.0 19.7 118 483-600 21-146 (194)
167 KOG0612 Rho-associated, coiled 87.3 30 0.00065 44.0 18.2 29 713-742 1013-1041(1317)
168 TIGR02894 DNA_bind_RsfA transc 87.3 4 8.6E-05 41.3 9.2 70 477-557 86-155 (161)
169 PF06160 EzrA: Septation ring 87.3 64 0.0014 37.4 20.0 154 458-613 250-406 (560)
170 COG3074 Uncharacterized protei 87.2 4.5 9.7E-05 36.6 8.5 66 562-627 8-73 (79)
171 PF05483 SCP-1: Synaptonemal c 87.1 74 0.0016 38.8 20.4 63 562-624 591-653 (786)
172 PF05667 DUF812: Protein of un 87.0 48 0.001 39.2 19.0 25 706-730 490-514 (594)
173 TIGR02977 phageshock_pspA phag 87.0 38 0.00083 34.5 18.3 15 461-475 25-39 (219)
174 KOG0239 Kinesin (KAR3 subfamil 87.0 32 0.00069 41.2 17.7 85 544-632 234-318 (670)
175 PF05546 She9_MDM33: She9 / Md 86.9 44 0.00096 35.2 17.3 102 488-596 9-123 (207)
176 PF11559 ADIP: Afadin- and alp 86.8 26 0.00057 33.4 14.1 60 458-524 29-88 (151)
177 cd07653 F-BAR_CIP4-like The F- 86.8 38 0.00083 34.3 18.5 126 460-588 5-149 (251)
178 PRK10246 exonuclease subunit S 86.7 66 0.0014 40.0 20.8 10 793-802 994-1003(1047)
179 PRK10361 DNA recombination pro 86.6 61 0.0013 37.7 19.1 55 577-631 145-204 (475)
180 TIGR02971 heterocyst_DevB ABC 86.5 45 0.00098 34.8 17.2 26 607-632 186-215 (327)
181 KOG4643 Uncharacterized coiled 86.2 69 0.0015 40.5 20.1 10 743-752 838-847 (1195)
182 TIGR01005 eps_transp_fam exopo 86.1 79 0.0017 37.3 22.2 19 595-613 378-396 (754)
183 PF09304 Cortex-I_coil: Cortex 86.1 22 0.00048 34.1 12.9 87 457-546 13-100 (107)
184 cd07672 F-BAR_PSTPIP2 The F-BA 86.0 48 0.001 34.7 17.7 105 487-591 78-187 (240)
185 PF10168 Nup88: Nuclear pore c 86.0 19 0.00041 43.2 15.4 24 498-521 568-591 (717)
186 PF10473 CENP-F_leu_zip: Leuci 85.9 38 0.00083 33.5 17.3 53 508-560 51-103 (140)
187 KOG0804 Cytoplasmic Zn-finger 85.5 31 0.00068 40.0 16.0 19 607-625 428-446 (493)
188 KOG1962 B-cell receptor-associ 85.2 12 0.00027 39.3 11.9 62 563-624 149-210 (216)
189 TIGR03185 DNA_S_dndD DNA sulfu 85.0 73 0.0016 37.3 19.1 36 587-623 301-336 (650)
190 PRK03598 putative efflux pump 84.9 40 0.00087 35.5 15.6 11 625-635 207-217 (331)
191 PRK10884 SH3 domain-containing 84.8 9.4 0.0002 39.4 10.7 77 455-541 88-164 (206)
192 PF09738 DUF2051: Double stran 84.7 49 0.0011 36.2 16.5 32 510-541 78-109 (302)
193 COG1340 Uncharacterized archae 84.5 70 0.0015 35.3 21.2 92 533-624 161-252 (294)
194 cd07675 F-BAR_FNBP1L The F-BAR 84.5 37 0.00081 36.2 15.2 137 489-631 89-234 (252)
195 PF05557 MAD: Mitotic checkpoi 84.5 5.2 0.00011 46.9 9.9 29 601-629 560-588 (722)
196 PF15035 Rootletin: Ciliary ro 84.4 28 0.00061 35.4 13.7 55 536-593 126-180 (182)
197 PF13166 AAA_13: AAA domain 84.3 88 0.0019 36.2 22.1 19 785-803 693-711 (712)
198 TIGR03185 DNA_S_dndD DNA sulfu 84.3 92 0.002 36.5 22.3 55 458-512 207-261 (650)
199 PF09787 Golgin_A5: Golgin sub 83.9 87 0.0019 35.9 20.4 99 704-806 355-466 (511)
200 PF06548 Kinesin-related: Kine 83.3 31 0.00067 40.0 14.7 107 477-624 330-437 (488)
201 KOG1029 Endocytic adaptor prot 83.2 78 0.0017 39.3 18.4 31 363-393 261-294 (1118)
202 COG2433 Uncharacterized conser 83.2 12 0.00026 44.4 11.9 19 578-596 487-505 (652)
203 TIGR02473 flagell_FliJ flagell 83.2 37 0.00081 31.1 14.0 31 580-610 83-113 (141)
204 PF08647 BRE1: BRE1 E3 ubiquit 83.1 15 0.00032 33.5 10.1 72 457-532 21-92 (96)
205 cd07649 F-BAR_GAS7 The F-BAR ( 82.9 65 0.0014 33.7 16.9 58 488-545 78-136 (233)
206 PF05483 SCP-1: Synaptonemal c 82.7 1.3E+02 0.0028 36.9 20.6 126 492-624 496-625 (786)
207 KOG0964 Structural maintenance 82.6 1.3E+02 0.0028 38.2 20.2 169 460-628 272-502 (1200)
208 PF07798 DUF1640: Protein of u 82.5 54 0.0012 32.5 16.2 33 559-594 121-153 (177)
209 KOG0243 Kinesin-like protein [ 82.5 79 0.0017 39.9 18.7 88 467-559 404-491 (1041)
210 PF14197 Cep57_CLD_2: Centroso 82.4 17 0.00038 31.9 9.9 52 478-529 16-67 (69)
211 TIGR02231 conserved hypothetic 82.4 8.8 0.00019 43.3 10.2 45 584-628 129-173 (525)
212 KOG4460 Nuclear pore complex, 82.2 84 0.0018 37.7 17.8 133 488-627 559-722 (741)
213 PF07106 TBPIP: Tat binding pr 81.9 7.3 0.00016 37.8 8.3 67 553-631 74-140 (169)
214 PF09730 BicD: Microtubule-ass 81.9 1.3E+02 0.0029 36.6 31.8 99 514-616 53-169 (717)
215 cd07658 F-BAR_NOSTRIN The F-BA 81.6 71 0.0015 33.2 17.1 131 477-613 58-220 (239)
216 PF13815 Dzip-like_N: Iguana/D 81.2 11 0.00024 35.2 8.9 81 458-538 25-116 (118)
217 PF10234 Cluap1: Clusterin-ass 81.1 59 0.0013 35.2 15.2 69 553-621 171-239 (267)
218 PF11559 ADIP: Afadin- and alp 81.0 53 0.0011 31.4 15.7 74 510-583 53-126 (151)
219 TIGR03794 NHPM_micro_HlyD NHPM 80.5 96 0.0021 34.1 17.4 22 607-628 227-248 (421)
220 KOG0978 E3 ubiquitin ligase in 80.4 86 0.0019 38.1 17.6 73 552-624 539-618 (698)
221 PRK10722 hypothetical protein; 79.9 6 0.00013 42.3 7.4 51 711-761 155-205 (247)
222 PF08826 DMPK_coil: DMPK coile 79.8 9.7 0.00021 33.1 7.3 53 520-572 5-60 (61)
223 KOG0999 Microtubule-associated 79.8 1.5E+02 0.0032 35.8 20.3 119 491-616 92-242 (772)
224 PF13942 Lipoprotein_20: YfhG 79.7 5.7 0.00012 40.7 6.9 50 711-760 109-158 (179)
225 TIGR00998 8a0101 efflux pump m 79.4 84 0.0018 32.7 15.9 13 461-473 81-93 (334)
226 TIGR03752 conj_TIGR03752 integ 79.0 11 0.00025 43.3 9.7 74 551-624 59-133 (472)
227 PRK10929 putative mechanosensi 79.0 1.7E+02 0.0038 37.3 20.3 23 462-484 67-89 (1109)
228 PRK15178 Vi polysaccharide exp 78.9 1.3E+02 0.0027 34.8 17.7 57 484-540 215-273 (434)
229 KOG2264 Exostosin EXT1L [Signa 78.8 12 0.00026 44.4 9.9 79 475-553 73-151 (907)
230 PRK10698 phage shock protein P 78.7 87 0.0019 32.5 16.0 31 461-491 25-55 (222)
231 PF04380 BMFP: Membrane fusoge 78.6 11 0.00024 33.5 7.5 66 501-566 12-79 (79)
232 cd07680 F-BAR_PACSIN1 The F-BA 78.3 1E+02 0.0022 33.1 17.6 96 512-617 115-223 (258)
233 PF06005 DUF904: Protein of un 78.2 20 0.00043 31.8 9.0 47 484-530 14-60 (72)
234 PRK09973 putative outer membra 78.0 6.3 0.00014 36.3 6.0 44 510-553 25-68 (85)
235 COG3096 MukB Uncharacterized p 77.7 1.9E+02 0.0041 36.2 19.1 108 495-609 980-1110(1480)
236 PF02050 FliJ: Flagellar FliJ 77.7 45 0.00097 28.7 15.2 76 481-556 12-92 (123)
237 KOG0018 Structural maintenance 77.7 2.1E+02 0.0046 36.6 20.1 32 456-487 230-261 (1141)
238 PF10481 CENP-F_N: Cenp-F N-te 77.4 1.1E+02 0.0024 33.9 15.9 18 460-477 18-35 (307)
239 KOG0946 ER-Golgi vesicle-tethe 77.3 1.6E+02 0.0035 36.7 18.6 35 715-749 908-942 (970)
240 KOG0249 LAR-interacting protei 77.2 55 0.0012 40.1 14.6 60 540-601 205-264 (916)
241 PF10146 zf-C4H2: Zinc finger- 76.8 70 0.0015 33.8 13.9 44 580-623 54-97 (230)
242 PF07106 TBPIP: Tat binding pr 76.7 27 0.00058 34.0 10.3 63 510-572 73-137 (169)
243 PF12795 MscS_porin: Mechanose 76.5 90 0.0019 32.1 14.4 170 455-624 13-209 (240)
244 TIGR02977 phageshock_pspA phag 76.4 95 0.0021 31.8 15.3 41 514-554 36-76 (219)
245 KOG0239 Kinesin (KAR3 subfamil 76.0 91 0.002 37.5 16.2 25 577-601 246-270 (670)
246 PF04728 LPP: Lipoprotein leuc 76.0 11 0.00024 32.5 6.6 44 503-553 4-47 (56)
247 COG3883 Uncharacterized protei 76.0 1.3E+02 0.0027 32.9 21.0 79 462-544 33-111 (265)
248 PF08647 BRE1: BRE1 E3 ubiquit 75.6 52 0.0011 30.1 11.2 67 495-568 3-69 (96)
249 COG3524 KpsE Capsule polysacch 75.5 46 0.001 37.3 12.6 112 485-596 153-268 (372)
250 PRK00409 recombination and DNA 75.2 54 0.0012 39.7 14.3 22 53-75 127-148 (782)
251 PF01576 Myosin_tail_1: Myosin 75.2 0.93 2E-05 54.4 0.0 96 478-580 620-715 (859)
252 TIGR01069 mutS2 MutS2 family p 75.1 61 0.0013 39.2 14.7 23 52-75 121-143 (771)
253 cd07666 BAR_SNX7 The Bin/Amphi 74.9 1.2E+02 0.0027 32.3 20.4 120 450-570 43-196 (243)
254 PF05262 Borrelia_P83: Borreli 74.8 95 0.0021 36.3 15.5 6 307-312 90-95 (489)
255 KOG0804 Cytoplasmic Zn-finger 74.8 1.1E+02 0.0023 35.9 15.6 108 500-619 340-447 (493)
256 PF10267 Tmemb_cc2: Predicted 74.5 42 0.00092 38.1 12.4 105 489-614 206-312 (395)
257 PRK15396 murein lipoprotein; P 74.5 9.6 0.00021 34.5 6.1 45 503-554 26-70 (78)
258 PRK05689 fliJ flagellar biosyn 74.3 79 0.0017 29.9 13.1 43 578-620 84-126 (147)
259 PRK09841 cryptic autophosphory 74.0 1.6E+02 0.0035 35.1 17.6 10 559-568 340-349 (726)
260 cd07622 BAR_SNX4 The Bin/Amphi 73.9 1.1E+02 0.0024 31.4 20.5 148 456-616 10-167 (201)
261 PF06005 DUF904: Protein of un 73.7 32 0.0007 30.6 9.1 59 498-556 7-65 (72)
262 COG3074 Uncharacterized protei 73.6 21 0.00045 32.5 7.9 58 460-517 18-75 (79)
263 COG4026 Uncharacterized protei 73.4 22 0.00047 38.3 9.3 67 512-585 138-204 (290)
264 COG5185 HEC1 Protein involved 73.2 76 0.0016 37.4 14.0 54 705-758 488-548 (622)
265 PF04012 PspA_IM30: PspA/IM30 73.1 1.1E+02 0.0023 30.8 15.5 16 555-570 88-103 (221)
266 COG4477 EzrA Negative regulato 73.0 96 0.0021 36.9 15.0 47 578-624 388-434 (570)
267 PF13851 GAS: Growth-arrest sp 72.9 1.2E+02 0.0026 31.2 18.7 57 468-524 28-84 (201)
268 PF05615 THOC7: Tho complex su 72.8 77 0.0017 30.0 12.0 98 448-546 23-124 (139)
269 KOG4438 Centromere-associated 72.4 2E+02 0.0043 33.6 21.0 98 534-631 198-300 (446)
270 PF03962 Mnd1: Mnd1 family; I 72.2 59 0.0013 33.0 11.8 79 484-570 30-122 (188)
271 PF11180 DUF2968: Protein of u 72.1 1.1E+02 0.0023 32.2 13.6 41 583-623 144-184 (192)
272 cd00632 Prefoldin_beta Prefold 71.9 79 0.0017 28.8 11.7 32 500-531 4-35 (105)
273 TIGR00634 recN DNA repair prot 71.6 2E+02 0.0043 33.3 20.0 34 463-496 171-204 (563)
274 cd07656 F-BAR_srGAP The F-BAR 71.6 1.4E+02 0.003 31.5 15.7 126 489-617 78-218 (241)
275 PRK15136 multidrug efflux syst 71.5 1.1E+02 0.0025 33.6 14.6 11 625-635 219-229 (390)
276 KOG0962 DNA repair protein RAD 71.5 3.2E+02 0.007 35.7 21.6 87 454-540 844-930 (1294)
277 KOG4005 Transcription factor X 71.2 39 0.00085 36.7 10.6 63 457-526 87-149 (292)
278 PRK15422 septal ring assembly 71.0 28 0.0006 32.0 8.2 60 460-519 18-77 (79)
279 KOG4360 Uncharacterized coiled 70.9 54 0.0012 38.7 12.4 141 481-621 76-240 (596)
280 KOG0995 Centromere-associated 70.4 2.5E+02 0.0053 33.8 21.3 90 466-555 307-400 (581)
281 cd07676 F-BAR_FBP17 The F-BAR 70.2 1.5E+02 0.0033 31.4 17.6 151 477-630 63-234 (253)
282 cd07647 F-BAR_PSTPIP The F-BAR 70.2 1.2E+02 0.0027 31.2 13.7 86 463-550 102-187 (239)
283 KOG0018 Structural maintenance 70.1 45 0.00097 42.1 12.1 59 559-618 277-335 (1141)
284 PRK03598 putative efflux pump 70.1 91 0.002 32.9 13.1 16 536-551 144-159 (331)
285 PF14389 Lzipper-MIP1: Leucine 69.9 21 0.00046 32.3 7.3 62 510-571 9-74 (88)
286 TIGR02231 conserved hypothetic 69.8 36 0.00078 38.5 10.7 30 510-539 72-101 (525)
287 PF05010 TACC: Transforming ac 69.8 1.5E+02 0.0032 31.1 21.2 68 531-598 70-137 (207)
288 PF07111 HCR: Alpha helical co 69.8 2.3E+02 0.005 34.8 17.4 48 578-625 161-208 (739)
289 PRK02119 hypothetical protein; 69.8 35 0.00075 30.2 8.4 57 559-629 3-59 (73)
290 COG1566 EmrA Multidrug resista 69.7 99 0.0021 34.6 13.7 115 511-633 100-220 (352)
291 COG1340 Uncharacterized archae 69.4 1.9E+02 0.0041 32.1 19.9 107 511-624 167-275 (294)
292 cd07598 BAR_FAM92 The Bin/Amph 69.3 1.5E+02 0.0032 30.9 20.2 50 459-508 10-67 (211)
293 PF07200 Mod_r: Modifier of ru 69.0 1.1E+02 0.0023 29.2 13.6 73 490-570 43-115 (150)
294 KOG0979 Structural maintenance 68.8 3.4E+02 0.0073 34.8 19.7 155 440-603 186-356 (1072)
295 COG2433 Uncharacterized conser 68.7 68 0.0015 38.6 12.7 67 559-633 451-520 (652)
296 PRK10476 multidrug resistance 68.0 1.4E+02 0.0031 31.7 14.1 16 611-626 187-202 (346)
297 COG1842 PspA Phage shock prote 67.9 1.7E+02 0.0036 30.9 14.8 87 510-596 32-130 (225)
298 PF12777 MT: Microtubule-bindi 67.4 57 0.0012 35.4 11.2 99 463-561 217-315 (344)
299 KOG2129 Uncharacterized conser 67.1 60 0.0013 37.7 11.5 19 507-525 199-217 (552)
300 KOG2008 BTK-associated SH3-dom 66.9 2.3E+02 0.005 32.2 18.3 82 489-570 77-167 (426)
301 PF10146 zf-C4H2: Zinc finger- 66.9 1.8E+02 0.0039 30.9 14.4 34 508-541 31-64 (230)
302 KOG1899 LAR transmembrane tyro 66.9 1.6E+02 0.0035 36.0 15.1 26 491-516 121-146 (861)
303 PF13870 DUF4201: Domain of un 66.8 1.3E+02 0.0029 29.5 17.1 124 468-598 7-131 (177)
304 PF06637 PV-1: PV-1 protein (P 66.7 1.4E+02 0.003 34.5 14.1 40 461-503 264-307 (442)
305 PF12777 MT: Microtubule-bindi 66.5 27 0.00059 37.8 8.6 39 558-596 242-280 (344)
306 PF06248 Zw10: Centromere/kine 66.4 1.6E+02 0.0034 34.2 15.0 15 511-525 48-62 (593)
307 PF15066 CAGE1: Cancer-associa 65.2 2.9E+02 0.0063 32.7 21.7 26 340-365 191-217 (527)
308 PF06818 Fez1: Fez1; InterPro 65.1 1.9E+02 0.0041 30.6 14.0 98 499-596 35-148 (202)
309 PF06818 Fez1: Fez1; InterPro 64.8 1.9E+02 0.0042 30.5 16.2 91 458-548 8-105 (202)
310 cd09238 V_Alix_like_1 Protein- 64.8 1.2E+02 0.0027 33.0 13.1 81 459-539 71-157 (339)
311 PF04728 LPP: Lipoprotein leuc 64.7 31 0.00067 29.9 6.8 46 488-545 3-48 (56)
312 cd07666 BAR_SNX7 The Bin/Amphi 64.5 2E+02 0.0044 30.7 21.4 138 469-616 56-211 (243)
313 PF05103 DivIVA: DivIVA protei 64.4 4.7 0.0001 36.8 2.1 31 495-525 39-69 (131)
314 cd07648 F-BAR_FCHO The F-BAR ( 64.4 1.8E+02 0.0039 30.1 16.8 29 478-506 57-85 (261)
315 PF05266 DUF724: Protein of un 64.3 1.4E+02 0.0031 30.6 12.7 57 555-625 128-184 (190)
316 COG3206 GumC Uncharacterized p 64.1 2.4E+02 0.0053 31.5 19.0 66 459-526 231-302 (458)
317 PF13863 DUF4200: Domain of un 63.9 1.2E+02 0.0026 27.8 14.3 21 578-598 87-107 (126)
318 COG3599 DivIVA Cell division i 63.8 1.6E+02 0.0034 31.0 13.1 57 539-596 83-140 (212)
319 PF04642 DUF601: Protein of un 63.8 44 0.00095 36.5 9.3 86 533-625 196-296 (311)
320 PF08826 DMPK_coil: DMPK coile 63.8 48 0.001 28.9 7.9 34 589-622 28-61 (61)
321 cd07679 F-BAR_PACSIN2 The F-BA 63.6 2.2E+02 0.0049 30.9 18.3 92 512-613 115-217 (258)
322 PRK12704 phosphodiesterase; Pr 63.6 3E+02 0.0064 32.3 19.1 14 614-627 189-202 (520)
323 PF03938 OmpH: Outer membrane 63.5 1.3E+02 0.0029 28.3 13.3 46 497-542 24-69 (158)
324 PF11180 DUF2968: Protein of u 63.4 1.5E+02 0.0032 31.2 12.6 57 514-570 110-166 (192)
325 cd07652 F-BAR_Rgd1 The F-BAR ( 63.0 2E+02 0.0043 30.0 16.3 54 477-530 61-114 (234)
326 KOG0288 WD40 repeat protein Ti 62.9 2.5E+02 0.0054 32.8 15.2 11 464-474 10-20 (459)
327 TIGR00618 sbcc exonuclease Sbc 62.6 3.9E+02 0.0084 33.3 21.2 9 249-257 30-38 (1042)
328 PF13863 DUF4200: Domain of un 62.4 1.3E+02 0.0028 27.6 14.1 19 538-556 50-68 (126)
329 KOG0977 Nuclear envelope prote 62.0 3.4E+02 0.0074 32.5 27.9 50 514-563 167-216 (546)
330 PF03962 Mnd1: Mnd1 family; I 61.9 42 0.00091 34.1 8.4 25 600-624 103-127 (188)
331 PF15294 Leu_zip: Leucine zipp 61.8 2.5E+02 0.0054 30.9 14.5 150 462-625 127-278 (278)
332 KOG4593 Mitotic checkpoint pro 61.6 3.9E+02 0.0084 33.0 22.2 117 473-589 79-203 (716)
333 PLN03229 acetyl-coenzyme A car 61.6 2.6E+02 0.0057 34.6 15.9 58 474-531 485-550 (762)
334 PF08172 CASP_C: CASP C termin 61.5 40 0.00087 35.8 8.5 34 491-524 2-35 (248)
335 PF09486 HrpB7: Bacterial type 61.4 1.9E+02 0.0041 29.3 17.6 18 606-623 120-137 (158)
336 PF09738 DUF2051: Double stran 61.4 1.4E+02 0.003 33.0 12.6 74 461-534 106-179 (302)
337 TIGR01010 BexC_CtrB_KpsE polys 61.2 2.4E+02 0.0052 30.4 17.8 42 531-572 215-256 (362)
338 PF04899 MbeD_MobD: MbeD/MobD 61.1 81 0.0017 28.2 9.0 61 462-522 9-69 (70)
339 PRK02793 phi X174 lysis protei 61.1 65 0.0014 28.4 8.4 24 606-629 35-58 (72)
340 KOG0244 Kinesin-like protein [ 61.1 1.8E+02 0.004 36.5 14.7 96 496-615 318-413 (913)
341 PF14992 TMCO5: TMCO5 family 60.8 1.3E+02 0.0029 33.0 12.3 105 464-572 22-137 (280)
342 PF10046 BLOC1_2: Biogenesis o 60.6 1.4E+02 0.003 27.5 11.6 45 480-524 13-57 (99)
343 TIGR02338 gimC_beta prefoldin, 60.6 1.4E+02 0.0031 27.6 11.1 50 498-547 6-58 (110)
344 KOG0946 ER-Golgi vesicle-tethe 60.5 4.4E+02 0.0096 33.3 19.4 48 479-526 669-716 (970)
345 PF14988 DUF4515: Domain of un 60.4 2.2E+02 0.0047 29.6 21.8 71 484-554 36-109 (206)
346 cd07672 F-BAR_PSTPIP2 The F-BA 60.4 87 0.0019 32.9 10.6 82 461-549 101-187 (240)
347 KOG0247 Kinesin-like protein [ 60.3 2.1E+02 0.0045 35.5 14.7 61 496-568 535-595 (809)
348 COG3096 MukB Uncharacterized p 60.1 2.6E+02 0.0057 35.1 15.4 47 483-529 364-410 (1480)
349 KOG4438 Centromere-associated 58.8 2E+02 0.0043 33.6 13.6 76 548-623 163-239 (446)
350 KOG3096 Spliceosome-associated 58.6 2.6E+02 0.0057 30.0 15.3 109 457-582 89-201 (225)
351 PRK13729 conjugal transfer pil 58.2 54 0.0012 38.2 9.4 38 586-623 83-120 (475)
352 PF12325 TMF_TATA_bd: TATA ele 58.2 1.8E+02 0.004 28.1 13.4 94 460-564 16-109 (120)
353 PF05529 Bap31: B-cell recepto 58.2 52 0.0011 32.6 8.2 67 549-615 116-190 (192)
354 PF15450 DUF4631: Domain of un 58.1 3.9E+02 0.0085 31.9 20.0 148 469-625 234-419 (531)
355 PF09728 Taxilin: Myosin-like 58.0 2.9E+02 0.0062 30.3 20.8 106 510-615 203-308 (309)
356 KOG0963 Transcription factor/C 57.9 4.3E+02 0.0092 32.2 22.0 120 494-613 188-337 (629)
357 KOG1003 Actin filament-coating 57.7 2.6E+02 0.0057 29.8 20.1 80 546-625 97-197 (205)
358 KOG3647 Predicted coiled-coil 57.6 1.6E+02 0.0034 32.9 12.1 64 557-620 118-181 (338)
359 PF06008 Laminin_I: Laminin Do 57.5 2.4E+02 0.0053 29.4 24.3 70 699-768 172-243 (264)
360 cd07655 F-BAR_PACSIN The F-BAR 57.5 2.3E+02 0.0049 29.8 13.1 90 462-551 114-203 (258)
361 PRK05689 fliJ flagellar biosyn 57.5 1.7E+02 0.0038 27.6 13.7 94 464-557 6-112 (147)
362 PF05529 Bap31: B-cell recepto 57.1 64 0.0014 32.0 8.7 25 512-536 157-181 (192)
363 KOG4005 Transcription factor X 57.1 70 0.0015 34.9 9.3 86 520-623 63-148 (292)
364 TIGR03752 conj_TIGR03752 integ 56.9 68 0.0015 37.4 9.9 18 597-614 120-137 (472)
365 KOG0993 Rab5 GTPase effector R 56.9 3.9E+02 0.0084 31.5 17.8 42 541-582 424-465 (542)
366 PF06148 COG2: COG (conserved 56.6 11 0.00023 35.4 3.1 87 505-604 22-108 (133)
367 TIGR02473 flagell_FliJ flagell 56.3 1.6E+02 0.0036 27.0 17.1 35 516-550 68-102 (141)
368 PF05335 DUF745: Protein of un 56.2 2.5E+02 0.0055 29.1 15.1 88 510-597 61-148 (188)
369 PF05384 DegS: Sensor protein 56.2 2.2E+02 0.0047 28.9 12.1 94 533-626 23-117 (159)
370 PF14739 DUF4472: Domain of un 56.1 53 0.0012 31.5 7.5 63 556-625 26-88 (108)
371 PRK07720 fliJ flagellar biosyn 55.8 1.9E+02 0.0041 27.5 17.4 53 556-615 69-121 (146)
372 PF15254 CCDC14: Coiled-coil d 55.7 3.3E+02 0.0073 34.0 15.4 137 490-626 389-555 (861)
373 PF09787 Golgin_A5: Golgin sub 55.7 3.8E+02 0.0082 31.0 20.2 25 708-732 392-416 (511)
374 PRK10698 phage shock protein P 55.3 2.6E+02 0.0057 29.1 15.4 48 581-628 101-148 (222)
375 PF13805 Pil1: Eisosome compon 55.0 3.2E+02 0.007 30.0 22.0 161 460-629 54-226 (271)
376 PF14362 DUF4407: Domain of un 54.8 2.1E+02 0.0045 30.3 12.3 7 579-585 196-202 (301)
377 PRK11578 macrolide transporter 54.5 1.1E+02 0.0023 32.9 10.4 9 625-633 187-195 (370)
378 PF05010 TACC: Transforming ac 54.4 2.8E+02 0.0061 29.1 19.9 115 492-612 87-201 (207)
379 PRK15396 murein lipoprotein; P 54.2 46 0.00099 30.3 6.4 48 580-627 26-73 (78)
380 PF04871 Uso1_p115_C: Uso1 / p 54.0 2.2E+02 0.0048 27.8 14.3 29 598-626 82-110 (136)
381 KOG4403 Cell surface glycoprot 53.9 2.5E+02 0.0055 33.1 13.5 21 577-597 359-379 (575)
382 PF13747 DUF4164: Domain of un 53.4 72 0.0016 29.2 7.6 44 711-754 39-82 (89)
383 PRK14154 heat shock protein Gr 53.3 2.4E+02 0.0052 29.8 12.3 50 511-560 54-103 (208)
384 PF10805 DUF2730: Protein of u 52.7 1.4E+02 0.003 27.9 9.5 63 506-568 32-96 (106)
385 PF04102 SlyX: SlyX; InterPro 52.5 49 0.0011 28.7 6.2 23 605-627 30-52 (69)
386 PRK04325 hypothetical protein; 52.3 1.1E+02 0.0024 27.1 8.4 47 560-627 11-57 (74)
387 PRK10869 recombination and rep 52.2 4.5E+02 0.0098 30.8 19.9 36 561-596 299-334 (553)
388 PF09311 Rab5-bind: Rabaptin-l 52.1 23 0.0005 35.4 4.7 85 463-554 11-95 (181)
389 PF10481 CENP-F_N: Cenp-F N-te 51.9 3.9E+02 0.0084 29.9 14.9 24 732-755 278-301 (307)
390 cd07654 F-BAR_FCHSD The F-BAR 51.6 2.6E+02 0.0056 30.1 12.5 66 490-555 79-156 (264)
391 PRK00295 hypothetical protein; 51.3 1.2E+02 0.0026 26.6 8.3 22 606-627 32-53 (68)
392 COG4717 Uncharacterized conser 51.3 6.3E+02 0.014 32.2 19.5 159 461-624 621-798 (984)
393 PF06120 Phage_HK97_TLTM: Tail 50.7 3.9E+02 0.0085 29.7 16.7 62 466-527 40-106 (301)
394 PF05929 Phage_GPO: Phage caps 50.7 63 0.0014 35.2 8.0 62 458-519 190-252 (276)
395 TIGR02449 conserved hypothetic 50.5 92 0.002 27.6 7.5 35 590-624 25-59 (65)
396 PF05700 BCAS2: Breast carcino 50.3 1.7E+02 0.0038 30.1 10.7 25 552-576 190-214 (221)
397 KOG2307 Low density lipoprotei 49.9 89 0.0019 37.6 9.4 119 517-648 47-167 (705)
398 KOG4250 TANK binding protein k 49.9 6E+02 0.013 31.6 17.0 163 446-626 400-572 (732)
399 PF14362 DUF4407: Domain of un 49.2 3.5E+02 0.0075 28.6 15.7 14 510-523 143-156 (301)
400 TIGR02971 heterocyst_DevB ABC 49.0 3.4E+02 0.0074 28.5 15.1 19 608-626 180-198 (327)
401 PF09728 Taxilin: Myosin-like 48.9 4E+02 0.0086 29.2 21.6 69 458-530 20-88 (309)
402 KOG2072 Translation initiation 48.9 6.7E+02 0.015 31.9 18.3 60 463-523 526-585 (988)
403 KOG0993 Rab5 GTPase effector R 48.5 2.5E+02 0.0053 33.0 12.3 91 500-590 22-132 (542)
404 PRK10803 tol-pal system protei 48.5 68 0.0015 33.9 7.7 59 560-625 42-100 (263)
405 PRK14143 heat shock protein Gr 48.5 3.2E+02 0.007 29.2 12.6 47 513-559 71-117 (238)
406 COG4238 Murein lipoprotein [Ce 48.1 73 0.0016 29.4 6.7 49 501-556 24-72 (78)
407 PF05400 FliT: Flagellar prote 47.9 1.4E+02 0.0029 25.0 8.0 51 711-761 11-73 (84)
408 KOG1937 Uncharacterized conser 47.6 5.5E+02 0.012 30.5 17.7 119 459-585 254-379 (521)
409 PF08657 DASH_Spc34: DASH comp 47.5 1.1E+02 0.0023 33.0 8.9 40 497-536 175-214 (259)
410 PF05791 Bacillus_HBL: Bacillu 47.4 88 0.0019 31.5 7.9 8 448-455 87-94 (184)
411 PF11577 NEMO: NF-kappa-B esse 47.1 1.9E+02 0.0041 25.9 8.9 60 479-538 8-67 (68)
412 PRK00888 ftsB cell division pr 47.1 62 0.0013 30.3 6.4 34 511-544 29-62 (105)
413 PRK04406 hypothetical protein; 46.6 1.5E+02 0.0032 26.6 8.3 23 606-628 38-60 (75)
414 PRK09793 methyl-accepting prot 46.5 4.9E+02 0.011 29.6 16.3 68 459-526 242-313 (533)
415 PF13949 ALIX_LYPXL_bnd: ALIX 46.5 3.5E+02 0.0077 27.9 12.8 148 460-611 22-169 (296)
416 PF10475 DUF2450: Protein of u 46.2 3.9E+02 0.0085 28.4 14.7 89 536-631 52-142 (291)
417 TIGR01069 mutS2 MutS2 family p 45.8 4.3E+02 0.0093 32.4 14.5 51 483-533 499-549 (771)
418 PF03961 DUF342: Protein of un 45.8 95 0.0021 34.8 8.7 72 554-626 337-408 (451)
419 cd09234 V_HD-PTP_like Protein- 45.8 4.3E+02 0.0094 28.8 20.2 226 459-759 71-299 (337)
420 PF09304 Cortex-I_coil: Cortex 44.9 3E+02 0.0066 26.7 13.4 20 604-623 83-102 (107)
421 KOG2891 Surface glycoprotein [ 44.9 5.1E+02 0.011 29.3 15.4 56 547-603 348-407 (445)
422 PF12329 TMF_DNA_bd: TATA elem 44.8 2.3E+02 0.0049 25.2 9.4 65 479-543 3-67 (74)
423 PRK15136 multidrug efflux syst 44.7 4.7E+02 0.01 28.9 13.8 7 481-487 99-105 (390)
424 COG4372 Uncharacterized protei 44.5 5.9E+02 0.013 29.9 22.7 46 461-506 117-162 (499)
425 PRK13428 F0F1 ATP synthase sub 44.4 4.1E+02 0.009 30.3 13.4 25 725-749 290-314 (445)
426 KOG4637 Adaptor for phosphoino 44.1 5.4E+02 0.012 30.0 14.0 123 406-569 44-187 (464)
427 PF02841 GBP_C: Guanylate-bind 44.0 4.3E+02 0.0093 28.2 13.4 14 494-507 154-167 (297)
428 cd07657 F-BAR_Fes_Fer The F-BA 43.9 4.1E+02 0.0089 28.0 17.8 49 510-558 106-154 (237)
429 KOG4460 Nuclear pore complex, 43.4 7E+02 0.015 30.5 15.6 161 448-621 569-730 (741)
430 PF05266 DUF724: Protein of un 43.4 3.9E+02 0.0085 27.6 13.2 60 461-524 87-146 (190)
431 COG1293 Predicted RNA-binding 43.2 3.5E+02 0.0076 31.9 13.0 140 463-603 261-408 (564)
432 KOG4572 Predicted DNA-binding 42.9 5.4E+02 0.012 32.8 14.5 58 709-766 1213-1275(1424)
433 PF11570 E2R135: Coiled-coil r 42.9 3.7E+02 0.008 27.2 11.6 47 498-544 4-50 (136)
434 KOG1962 B-cell receptor-associ 42.9 2.6E+02 0.0057 29.8 10.8 48 494-541 150-197 (216)
435 PF14966 DNA_repr_REX1B: DNA r 42.6 2.4E+02 0.0052 26.3 9.4 29 540-568 36-64 (97)
436 PF02994 Transposase_22: L1 tr 42.5 54 0.0012 36.3 6.1 43 583-625 141-183 (370)
437 PRK14148 heat shock protein Gr 42.5 1.6E+02 0.0035 30.6 9.1 49 511-559 42-90 (195)
438 PRK14140 heat shock protein Gr 42.3 1.2E+02 0.0026 31.4 8.2 50 510-559 38-87 (191)
439 PF02403 Seryl_tRNA_N: Seryl-t 42.1 1.3E+02 0.0027 27.3 7.4 29 468-496 30-58 (108)
440 PF10212 TTKRSYEDQ: Predicted 42.1 4.3E+02 0.0094 31.5 13.3 68 285-376 225-292 (518)
441 PRK09973 putative outer membra 42.0 83 0.0018 29.3 6.2 46 580-625 25-70 (85)
442 PHA02816 hypothetical protein; 41.9 16 0.00035 34.0 1.7 29 54-82 37-65 (106)
443 KOG0992 Uncharacterized conser 41.8 7.1E+02 0.015 30.1 15.0 95 461-570 209-307 (613)
444 PF06008 Laminin_I: Laminin Do 41.6 4.3E+02 0.0094 27.6 16.9 28 724-751 219-246 (264)
445 cd07624 BAR_SNX7_30 The Bin/Am 41.6 3.9E+02 0.0085 27.1 20.7 41 454-494 8-52 (200)
446 PF00015 MCPsignal: Methyl-acc 41.3 3.3E+02 0.0071 26.1 12.6 17 458-474 73-89 (213)
447 cd07664 BAR_SNX2 The Bin/Amphi 41.3 4.6E+02 0.01 27.8 23.0 104 496-604 74-184 (234)
448 cd07681 F-BAR_PACSIN3 The F-BA 41.1 5E+02 0.011 28.1 17.3 95 514-613 117-217 (258)
449 TIGR03545 conserved hypothetic 41.0 1.5E+02 0.0032 35.0 9.6 42 509-551 164-205 (555)
450 PRK00736 hypothetical protein; 41.0 2.1E+02 0.0046 25.0 8.3 48 560-628 7-54 (68)
451 PF06156 DUF972: Protein of un 40.9 1.4E+02 0.0031 28.3 7.7 47 460-506 8-54 (107)
452 PF14735 HAUS4: HAUS augmin-li 40.9 4.8E+02 0.011 27.9 19.7 120 503-626 75-204 (238)
453 PF12709 Kinetocho_Slk19: Cent 40.9 3.1E+02 0.0068 25.8 10.2 49 564-619 33-82 (87)
454 COG5185 HEC1 Protein involved 40.9 7.2E+02 0.016 29.9 22.7 103 491-604 298-407 (622)
455 PF03357 Snf7: Snf7; InterPro 40.9 3.1E+02 0.0068 25.8 10.4 66 513-580 5-70 (171)
456 PRK11519 tyrosine kinase; Prov 40.8 7.2E+02 0.016 29.9 17.8 16 597-612 374-389 (719)
457 PF05911 DUF869: Plant protein 40.0 8.4E+02 0.018 30.4 29.8 167 459-625 23-208 (769)
458 PRK10780 periplasmic chaperone 39.9 3.7E+02 0.0081 26.4 12.8 43 498-540 32-74 (165)
459 KOG3215 Uncharacterized conser 39.9 5E+02 0.011 28.0 12.2 48 573-622 153-205 (222)
460 PF14915 CCDC144C: CCDC144C pr 39.7 6E+02 0.013 28.6 22.0 41 514-554 82-125 (305)
461 PF07227 DUF1423: Protein of u 39.7 3.2E+02 0.007 32.0 11.7 88 491-584 356-445 (446)
462 PRK00409 recombination and DNA 39.7 7E+02 0.015 30.7 15.0 19 689-707 665-683 (782)
463 TIGR03319 YmdA_YtgF conserved 39.7 6.9E+02 0.015 29.3 19.2 148 458-613 46-193 (514)
464 PF14931 IFT20: Intraflagellar 39.5 3.7E+02 0.008 26.1 13.5 86 514-609 32-117 (120)
465 PF09766 FimP: Fms-interacting 39.2 4.7E+02 0.01 29.1 12.5 110 513-626 2-141 (355)
466 PF13874 Nup54: Nucleoporin co 38.9 1.7E+02 0.0036 28.4 8.1 23 500-522 35-57 (141)
467 cd07665 BAR_SNX1 The Bin/Amphi 38.9 5.1E+02 0.011 27.6 20.7 155 457-616 19-200 (234)
468 PF05837 CENP-H: Centromere pr 38.7 3.2E+02 0.007 25.5 9.6 58 538-596 18-75 (106)
469 PF06120 Phage_HK97_TLTM: Tail 38.5 6E+02 0.013 28.3 17.3 59 481-541 41-99 (301)
470 PRK14151 heat shock protein Gr 38.4 4.5E+02 0.0098 26.9 11.6 96 511-625 22-117 (176)
471 KOG4302 Microtubule-associated 38.1 5E+02 0.011 31.8 13.3 160 463-627 64-253 (660)
472 TIGR02449 conserved hypothetic 38.0 2.4E+02 0.0052 25.2 8.1 44 513-556 11-54 (65)
473 KOG1850 Myosin-like coiled-coi 37.8 6.8E+02 0.015 28.7 21.5 165 459-631 150-330 (391)
474 PF07989 Microtub_assoc: Micro 37.7 2.6E+02 0.0057 25.1 8.5 17 464-480 4-20 (75)
475 KOG4403 Cell surface glycoprot 37.6 1.4E+02 0.0031 35.0 8.5 17 567-583 311-327 (575)
476 COG1566 EmrA Multidrug resista 37.4 4.3E+02 0.0092 29.8 11.9 59 570-628 142-204 (352)
477 PF04977 DivIC: Septum formati 37.3 1.3E+02 0.0027 25.2 6.3 33 510-542 18-50 (80)
478 PF06156 DUF972: Protein of un 37.3 1.8E+02 0.0038 27.7 7.8 53 708-760 5-57 (107)
479 PF05278 PEARLI-4: Arabidopsis 37.2 6.1E+02 0.013 28.0 14.8 122 462-591 135-261 (269)
480 PRK09343 prefoldin subunit bet 37.1 3.8E+02 0.0082 25.6 11.9 35 584-618 76-110 (121)
481 PF06785 UPF0242: Uncharacteri 37.0 7.1E+02 0.015 28.7 17.3 98 464-561 72-172 (401)
482 PRK15030 multidrug efflux syst 36.9 1.6E+02 0.0035 32.2 8.6 7 626-632 178-184 (397)
483 PRK01156 chromosome segregatio 36.9 8.5E+02 0.018 29.6 32.7 33 703-735 468-500 (895)
484 PRK07720 fliJ flagellar biosyn 36.9 3.8E+02 0.0082 25.5 13.8 93 465-557 7-112 (146)
485 PF08172 CASP_C: CASP C termin 36.9 3.4E+02 0.0075 29.0 10.7 111 470-580 2-129 (248)
486 KOG1144 Translation initiation 36.4 3.4E+02 0.0073 34.2 11.6 49 584-632 257-307 (1064)
487 cd00632 Prefoldin_beta Prefold 36.4 3.4E+02 0.0073 24.8 11.4 21 528-548 21-41 (105)
488 KOG2751 Beclin-like protein [S 36.2 7.8E+02 0.017 29.0 13.8 56 465-536 148-203 (447)
489 PF06632 XRCC4: DNA double-str 36.0 4.8E+02 0.01 29.4 12.0 64 462-525 139-203 (342)
490 PF10226 DUF2216: Uncharacteri 35.9 5.6E+02 0.012 27.2 19.4 49 476-524 18-70 (195)
491 PF02403 Seryl_tRNA_N: Seryl-t 35.4 2.9E+02 0.0062 25.0 8.6 26 545-570 68-93 (108)
492 PRK00846 hypothetical protein; 35.1 3.4E+02 0.0074 24.8 8.9 25 605-629 39-63 (77)
493 PRK11546 zraP zinc resistance 34.9 2E+02 0.0043 29.0 8.0 62 510-571 48-109 (143)
494 TIGR01730 RND_mfp RND family e 34.3 2.7E+02 0.0059 28.4 9.2 11 511-521 80-90 (322)
495 PRK14160 heat shock protein Gr 34.3 2E+02 0.0043 30.4 8.3 49 511-559 63-111 (211)
496 COG4985 ABC-type phosphate tra 34.3 3.5E+02 0.0075 29.8 10.2 80 540-625 160-246 (289)
497 PRK08476 F0F1 ATP synthase sub 34.2 4.4E+02 0.0095 25.5 13.4 94 514-625 32-125 (141)
498 TIGR02132 phaR_Bmeg polyhydrox 34.1 5.9E+02 0.013 27.0 12.2 104 501-625 34-153 (189)
499 cd07652 F-BAR_Rgd1 The F-BAR ( 34.0 5.7E+02 0.012 26.7 15.8 135 462-614 67-209 (234)
500 PF15272 BBP1_C: Spindle pole 34.0 5.9E+02 0.013 26.9 14.6 112 499-617 9-122 (196)
No 1
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.15 E-value=0.0027 Score=73.27 Aligned_cols=165 Identities=18% Similarity=0.318 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 003487 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 539 (816)
Q Consensus 460 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aEr 539 (816)
.+...|++.++++..+--.+...+.....-.+++..+-..+..........+..++.++++++.++......++.+..+.
T Consensus 677 ~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~ 756 (1179)
T TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555444555444444444444444444555555555554444444444444444
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHH
Q 003487 540 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM 619 (816)
Q Consensus 540 daArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklL 619 (816)
.....+.....++...+-.++-.|++++..++...-.++.+++.+..++..++.++..+..+...++..+..++.+.+.+
T Consensus 757 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l 836 (1179)
T TIGR02168 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAAT 836 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444443333322223334444444444444444444444444444444444444444
Q ss_pred HHHHH
Q 003487 620 QSKLR 624 (816)
Q Consensus 620 qskLR 624 (816)
+.++.
T Consensus 837 ~~~~~ 841 (1179)
T TIGR02168 837 ERRLE 841 (1179)
T ss_pred HHHHH
Confidence 43333
No 2
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.04 E-value=0.0062 Score=70.43 Aligned_cols=156 Identities=21% Similarity=0.292 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 003487 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 540 (816)
Q Consensus 461 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErd 540 (816)
+...|++.++++..+.-.+...++..+.-.+.+-.+-..+...++.....+..++.++++++.++......++.+..+.+
T Consensus 685 ~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~ 764 (1179)
T TIGR02168 685 KIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIE 764 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555544444444444444444555555555555555555555544444444444444444
Q ss_pred HHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHH
Q 003487 541 NVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 616 (816)
Q Consensus 541 aArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEK 616 (816)
..+.+...+.+.-..+..++..+++++..++...-.++.++..++.++..++.++..++.....++..+..++++.
T Consensus 765 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~ 840 (1179)
T TIGR02168 765 ELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL 840 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444333333333333333333333333333333333333333333333333333333333333333333333
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.97 E-value=0.018 Score=67.22 Aligned_cols=47 Identities=15% Similarity=0.172 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 003487 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ 506 (816)
Q Consensus 460 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNq 506 (816)
.++..++..+++++.+.-.+...++....-.+.+-.+-..+...++.
T Consensus 237 ~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 283 (1164)
T TIGR02169 237 RQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKD 283 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555566666666666666666666666556665555555555555
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.88 E-value=0.0027 Score=73.82 Aligned_cols=7 Identities=29% Similarity=0.534 Sum_probs=3.2
Q ss_pred cccccccc
Q 003487 687 GRLALEGL 694 (816)
Q Consensus 687 G~~~l~g~ 694 (816)
|.| .||.
T Consensus 653 G~~-tgG~ 659 (1164)
T TIGR02169 653 GAM-TGGS 659 (1164)
T ss_pred cCc-cCCC
Confidence 444 4554
No 5
>PRK02224 chromosome segregation protein; Provisional
Probab=97.85 E-value=0.021 Score=66.37 Aligned_cols=76 Identities=17% Similarity=0.241 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003487 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSY-------NQQRSVVNQLKSEMEKLQEEIKVQLVELE 533 (816)
Q Consensus 461 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~y-------NqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le 533 (816)
++..|++.|.++..+.-.+...+.......+.|-.+.+.|.... ........+|..+.+.|+.++......+.
T Consensus 259 ~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l~~~~~~l~ 338 (880)
T PRK02224 259 EIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQ 338 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555544444455555555554444444444433322 22222334455555555555544444443
Q ss_pred hhH
Q 003487 534 SFR 536 (816)
Q Consensus 534 ~l~ 536 (816)
.+.
T Consensus 339 ~~~ 341 (880)
T PRK02224 339 AHN 341 (880)
T ss_pred HHH
Confidence 333
No 6
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.61 E-value=0.089 Score=64.11 Aligned_cols=48 Identities=27% Similarity=0.306 Sum_probs=34.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHh
Q 003487 704 RMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQ 751 (816)
Q Consensus 704 RmI~NInaLisELa~Ereel~~AL~~es~~~s~Lk~lN~ELsrKLE~q 751 (816)
..+.++++-|.++..+++.+-..|+.......+++.....+..++...
T Consensus 870 ~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l 917 (1163)
T COG1196 870 AEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEEL 917 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777777777777777777777777666643
No 7
>PRK02224 chromosome segregation protein; Provisional
Probab=97.49 E-value=0.017 Score=66.98 Aligned_cols=156 Identities=19% Similarity=0.268 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 003487 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 540 (816)
Q Consensus 461 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErd 540 (816)
+.+.|+..|+++..++-.+...+..+.++. .|...-+.+.+..+.....+.......+.|++++..-...+.....+++
T Consensus 483 ~~~~le~~l~~~~~~~e~l~~~~~~~~~l~-~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~ 561 (880)
T PRK02224 483 ELEDLEEEVEEVEERLERAEDLVEAEDRIE-RLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAA 561 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555554444444444333332 3333334444445555555555566666666666666666666666667
Q ss_pred HHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHH
Q 003487 541 NVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQ 620 (816)
Q Consensus 541 aArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLq 620 (816)
.+..+..++.++...+..++-.|+.+.-++. . +..+..++...+..+..++.++..+....+.++++..-+.
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le-~-------~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r 633 (880)
T PRK02224 562 EAEEEAEEAREEVAELNSKLAELKERIESLE-R-------IRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKR 633 (880)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777788888888888877777664 3 3333334444444444444444444444445555555555
Q ss_pred HHHHh
Q 003487 621 SKLRK 625 (816)
Q Consensus 621 skLRk 625 (816)
.++..
T Consensus 634 ~~i~~ 638 (880)
T PRK02224 634 ERKRE 638 (880)
T ss_pred HHHHH
Confidence 55553
No 8
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.49 E-value=0.044 Score=70.00 Aligned_cols=238 Identities=24% Similarity=0.330 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-------HHHHhhhhHHHHHHHhhhhhhHHHHHHH
Q 003487 483 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV-------QLVELESFRNEYANVRLECNAADERAKI 555 (816)
Q Consensus 483 L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~a-------Q~~~le~l~aErdaArle~~aA~ERak~ 555 (816)
++.+.++-+.|..+...+-..+..-...+.++++....|+.+... -...++.+-..|+.++++.+++..+-+.
T Consensus 889 ~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~ 968 (1930)
T KOG0161|consen 889 LAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKN 968 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666666666655544444433333 3333444455566788888888888888
Q ss_pred HHHHHHhHHHHHHHHhhhhhhhHHHHh----hhHHHHHHHHHHhhhHHHhhhhhHHHHHHHH----HHHHH---HHHHHH
Q 003487 556 LASEVIGLEEKALRLRSNELKLERQLE----NSQSEISSYKKKISSLEKERQDFQSTIEALQ----EEKKM---MQSKLR 624 (816)
Q Consensus 556 LAaEVV~LEEk~l~LRS~ELKlerele----~l~~E~~s~~rqlsslekeR~~lqsti~ALQ----EEKkl---LqskLR 624 (816)
|-.|+..|++.+-.| .|..|+++ .+...+-..+.++..+.|-...|...++-|+ +|++. +....|
T Consensus 969 l~~e~~~~~e~~~kL----~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~r 1044 (1930)
T KOG0161|consen 969 LEEEINSLDENISKL----SKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKR 1044 (1930)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887755 33333333 3556666677777777777777776666554 33333 333334
Q ss_pred hhcCCCCccCCCCCcccccccccccccccccCccccCCCCCCccCCCCCcCCCCCCCCCCcccccccccccccchhhHHH
Q 003487 625 KASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMR 704 (816)
Q Consensus 625 ka~~~gk~~~~~kns~~~kDASTSTdDLai~dd~~~sSn~etlds~s~~s~~~s~~pllpe~G~~~l~g~~vsIp~DQlR 704 (816)
++-+.-+... .+ -.+.-..-++| +.. . ... . .+-|++ -.-.+|.-+
T Consensus 1045 kle~el~~~~---e~--~~~~~~~~~el----~~~-----l--~kk---e---------~El~~l------~~k~e~e~~ 1090 (1930)
T KOG0161|consen 1045 KLEGELKDLQ---ES--IEELKKQKEEL----DNQ-----L--KKK---E---------SELSQL------QSKLEDEQA 1090 (1930)
T ss_pred HHHHHHHHhh---hH--HHHHHHHHHHH----HHH-----H--HHH---H---------HHHHHH------HHHhhHHHH
Confidence 4333221100 00 00011111111 000 0 000 0 011111 234466667
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhhhHHHHH
Q 003487 705 MIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELL 758 (816)
Q Consensus 705 mI~NInaLisELa~Ereel~~AL~~es~~~s~Lk~lN~ELsrKLE~qTQRLELl 758 (816)
++..+--.|.||+....+|-.-|..+....+++.....||.+.||+.+.+||.+
T Consensus 1091 ~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1091 EVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888888888888888888888888888888888888888888877
No 9
>PRK11637 AmiB activator; Provisional
Probab=97.43 E-value=0.045 Score=59.57 Aligned_cols=79 Identities=13% Similarity=0.149 Sum_probs=54.4
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003487 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 535 (816)
Q Consensus 457 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l 535 (816)
...++...|++-|+++-++.-.++..+.....-.+.|..+-..+...+|+....+.+++.++++++.+|......++..
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777777777776666666667777777777777777777777777776666666655555444
No 10
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.32 E-value=0.036 Score=67.38 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003487 459 NEDFAALEQHIEDLTQEKFALQRSLEA 485 (816)
Q Consensus 459 ~~~faaLqqhIeDLT~EKfaLqR~L~~ 485 (816)
...+..|+.+|.+++..--.+.+.++.
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1163)
T COG1196 694 KNELRSLEDLLEELRRQLEELERQLEE 720 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777766555555554333
No 11
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.32 E-value=0.65 Score=55.20 Aligned_cols=171 Identities=22% Similarity=0.299 Sum_probs=124.1
Q ss_pred cccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHH-------------
Q 003487 451 HGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSE------------- 517 (816)
Q Consensus 451 ~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~d------------- 517 (816)
-|-+|--.-.++..|+|-+.-+-.||-+|...|+.+|.-.+.=-.+-+..+++.|..+..|++|+..
T Consensus 256 ~DLfSEl~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~ 335 (717)
T PF09730_consen 256 SDLFSELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSE 335 (717)
T ss_pred chhhhhcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcc
Confidence 4667777788999999999999999999999999999988888888888888888888888888871
Q ss_pred ------------------HHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHH
Q 003487 518 ------------------MEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER 579 (816)
Q Consensus 518 ------------------mEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKler 579 (816)
++-|+....+-..++..++.|..+.+..+....++.+. +-..++.++..|......+++
T Consensus 336 ~~~~s~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~---ek~~~~~e~q~L~ekl~~lek 412 (717)
T PF09730_consen 336 KERDSHEDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQ---EKDRLESEVQNLKEKLMSLEK 412 (717)
T ss_pred cccccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 24455555555666667777777777766666665543 222334444444444444466
Q ss_pred HHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 003487 580 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 624 (816)
Q Consensus 580 ele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLR 624 (816)
....-...+..+++.+..+.+-.++.+..+.+.|+|-..+-.-|-
T Consensus 413 ~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLA 457 (717)
T PF09730_consen 413 SSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELA 457 (717)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 555556677888888888888888888888888877755544443
No 12
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.23 E-value=0.06 Score=61.83 Aligned_cols=153 Identities=24% Similarity=0.284 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 003487 465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL 544 (816)
Q Consensus 465 LqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArl 544 (816)
||..|+++-+||-.|+.....-.+-+++|-.+++.|- ..+...+.++++|+++.+.-....+.+..|++-...
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~-------~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~ 213 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLE-------AELEQEEEEMEQLKQQQKELTESSEELKEERESLKE 213 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999889999988777666655555555555554 445555556666666655555667788899999888
Q ss_pred hhhhHHHHHHHHHHHHHhHHHHHHHH-----hhhhhhhHHHHh--hhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHH
Q 003487 545 ECNAADERAKILASEVIGLEEKALRL-----RSNELKLERQLE--NSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK 617 (816)
Q Consensus 545 e~~aA~ERak~LAaEVV~LEEk~l~L-----RS~ELKlerele--~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKk 617 (816)
...++..|.+.|-.++..|..+.... +-.+++.+++.. .++.++..+..++.....++..++--+++|.|+-+
T Consensus 214 q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr 293 (546)
T PF07888_consen 214 QLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLR 293 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 88999999999999999998887422 111222222211 12233444444444334444455555556666555
Q ss_pred HHHHHHH
Q 003487 618 MMQSKLR 624 (816)
Q Consensus 618 lLqskLR 624 (816)
.++.+|.
T Consensus 294 ~~qe~lq 300 (546)
T PF07888_consen 294 SAQEQLQ 300 (546)
T ss_pred HHHHHHH
Confidence 5555554
No 13
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.11 E-value=0.066 Score=65.10 Aligned_cols=136 Identities=16% Similarity=0.257 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHH-------HHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHH
Q 003487 484 EASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEK-------LQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 556 (816)
Q Consensus 484 ~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEq-------Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~L 556 (816)
...++-.+..-..++++..+++.--.++++++++.+. +.+.++..+.+...++.|+..+.....+...+-..|
T Consensus 298 ~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l 377 (1074)
T KOG0250|consen 298 DTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRL 377 (1074)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555556666666666666666666555444 444444555555566677777777777777888888
Q ss_pred HHHHHhHHHHH-HHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHH
Q 003487 557 ASEVIGLEEKA-LRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM 619 (816)
Q Consensus 557 AaEVV~LEEk~-l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklL 619 (816)
-..|..++++. ..+-++-.+.+.+++.|..|++.++-++.+|..+++++..-+...+||+-..
T Consensus 378 ~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i 441 (1074)
T KOG0250|consen 378 EKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHI 441 (1074)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 88888888888 6667777788889999999999999999999999999999888888888433
No 14
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.09 E-value=0.04 Score=58.46 Aligned_cols=76 Identities=25% Similarity=0.406 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHHhhhhHHHHHH
Q 003487 466 EQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLK----SEMEKLQEEIKVQLVELESFRNEYAN 541 (816)
Q Consensus 466 qqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk----~dmEqLq~Ei~aQ~~~le~l~aErda 541 (816)
+.|++.|-.++-.|...+++...+...|.....+|....+.-...+.++. .+++.+++++..+..+++.++.+.+.
T Consensus 155 ~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~e 234 (325)
T PF08317_consen 155 EENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAE 234 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444333321 33444444444444444444333333
No 15
>PRK11637 AmiB activator; Provisional
Probab=97.03 E-value=0.16 Score=55.45 Aligned_cols=76 Identities=18% Similarity=0.245 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003487 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 535 (816)
Q Consensus 460 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l 535 (816)
.++..+++-|.++..++-.++..|....+=.+.+..+-..+....+.....+.+|+.++++++.+|..+...+...
T Consensus 54 ~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~r 129 (428)
T PRK11637 54 QDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQ 129 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777766666666555555566666666666666666666666666666666655554433
No 16
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.99 E-value=0.06 Score=68.87 Aligned_cols=156 Identities=21% Similarity=0.259 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHH--------------HHHHHHHHHH
Q 003487 466 EQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKL--------------QEEIKVQLVE 531 (816)
Q Consensus 466 qqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqL--------------q~Ei~aQ~~~ 531 (816)
.|+++++-++|--|+.-|+..++..+-+...+..|-...|+-.+.+.-+..++++. ..-+.--.-.
T Consensus 1371 ~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~ 1450 (1930)
T KOG0161|consen 1371 LQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKK 1450 (1930)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999998666666555555444 2222233333
Q ss_pred hhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHH
Q 003487 532 LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA 611 (816)
Q Consensus 532 le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~A 611 (816)
.+.+..|+|+|+.+..+.....+.|.-.+-.+=+.+-+ ++++-..+..++..+..++..+.|..++|+....+
T Consensus 1451 ~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~-------l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~ 1523 (1930)
T KOG0161|consen 1451 LEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEE-------LRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRR 1523 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777766666666666655554444333333 35555677778888888888888888888888888
Q ss_pred HHHHHHHHHHHHHhhcC
Q 003487 612 LQEEKKMMQSKLRKASG 628 (816)
Q Consensus 612 LQEEKklLqskLRka~~ 628 (816)
+..||.-||.+|-.+-+
T Consensus 1524 le~e~~elQ~aLeElE~ 1540 (1930)
T KOG0161|consen 1524 LEQEKEELQAALEELEA 1540 (1930)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888875443
No 17
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.98 E-value=1.3 Score=52.50 Aligned_cols=168 Identities=21% Similarity=0.274 Sum_probs=81.7
Q ss_pred CCchhhHHHHHHHHHHHHHHH---HHHHHHHHHH-----------HHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHH
Q 003487 456 TKHNEDFAALEQHIEDLTQEK---FALQRSLEAS-----------RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKL 521 (816)
Q Consensus 456 ~~~~~~faaLqqhIeDLT~EK---faLqR~L~~s-----------~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqL 521 (816)
....+....||+-|+-|-.|= ..+...|..+ +--.++|-.||+.|-.+++.....-.+-|.-|..|
T Consensus 414 ~~~~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~L 493 (697)
T PF09726_consen 414 NSEPDAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQL 493 (697)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778888777665441 1111122111 22245577788888888877666655555555555
Q ss_pred HHHHHH---HHHHhh-hhHHHHHHHhhhhh-hHH----------HHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHH
Q 003487 522 QEEIKV---QLVELE-SFRNEYANVRLECN-AAD----------ERAKILASEVIGLEEKALRLRSNELKLERQLENSQS 586 (816)
Q Consensus 522 q~Ei~a---Q~~~le-~l~aErdaArle~~-aA~----------ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~ 586 (816)
++.++. ++..+| .|.+||.+-+.+.. +|. |-+-.+-.-+-.||.++.+||.+.-..|.++..+..
T Consensus 494 EkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~ 573 (697)
T PF09726_consen 494 EKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELES 573 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443332 223332 33555533222111 110 111122223344555555555433333333334444
Q ss_pred HHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 003487 587 EISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 623 (816)
Q Consensus 587 E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskL 623 (816)
|+..++.....-++|-..|.+.+.+|||+..+|..-|
T Consensus 574 ~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sL 610 (697)
T PF09726_consen 574 ELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSL 610 (697)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444312234566677777888888876665544
No 18
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.96 E-value=0.11 Score=59.69 Aligned_cols=64 Identities=25% Similarity=0.375 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 003487 463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 526 (816)
Q Consensus 463 aaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~ 526 (816)
..|++-.+.|-++.-.|++.|..+++-++.|..++..++...-........|+.+.+.++..|.
T Consensus 160 ~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~ 223 (546)
T PF07888_consen 160 EQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIR 223 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666677888888888888888888888887665555555555554444444333
No 19
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.95 E-value=0.14 Score=56.26 Aligned_cols=67 Identities=18% Similarity=0.283 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 003487 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSE----SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 526 (816)
Q Consensus 460 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~E----sLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~ 526 (816)
+.+..+++.|+.+..+.-.++-.++..++..+ .+......+...|+......++++.++++|+.+|.
T Consensus 174 ~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~ 244 (562)
T PHA02562 174 DKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELL 244 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555554444443222222 22233344444455555555555555555555443
No 20
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.82 E-value=0.093 Score=64.66 Aligned_cols=78 Identities=14% Similarity=0.201 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 003487 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 539 (816)
Q Consensus 460 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aEr 539 (816)
.++..||+-|.++..+|+.+...+++- .+|..+-..|...-++++..+..++.+++-|+.++..-...++.++.+.
T Consensus 857 ~eI~~Lq~ki~el~~~klkl~~~l~~r----~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 932 (1311)
T TIGR00606 857 EQIQHLKSKTNELKSEKLQIGTNLQRR----QQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSK 932 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 334444444444444555444433322 2333344445555566666666666666666666555555555554443
Q ss_pred HH
Q 003487 540 AN 541 (816)
Q Consensus 540 da 541 (816)
..
T Consensus 933 ~~ 934 (1311)
T TIGR00606 933 ET 934 (1311)
T ss_pred HH
Confidence 33
No 21
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.79 E-value=0.63 Score=54.33 Aligned_cols=228 Identities=23% Similarity=0.284 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh----
Q 003487 467 QHIEDLTQEKFALQRSLEASRALSESLAAENSS----------LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL---- 532 (816)
Q Consensus 467 qhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsa----------LTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~l---- 532 (816)
+.++.|..+|..+.|+|.+=++|-++|+.=-.+ ||..-----++..+|+..+.+|+.++..-...+
T Consensus 143 kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~ 222 (617)
T PF15070_consen 143 KLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKS 222 (617)
T ss_pred HHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445566667788889999988888888764333 333322223333344444444444433333332
Q ss_pred ---hhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHH-HhhhHHHHHHHHHHhhhHHHhhhhhHHH
Q 003487 533 ---ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQ-LENSQSEISSYKKKISSLEKERQDFQST 608 (816)
Q Consensus 533 ---e~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlere-le~l~~E~~s~~rqlsslekeR~~lqst 608 (816)
..+..+||..---......-...|++|--.|-.+++. +.+ ++.++.+-...+..++-+-+|=+..+-.
T Consensus 223 qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~l~--------Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~ 294 (617)
T PF15070_consen 223 QEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQLLQ--------QTQLMDRLQHEESQGKVQLEMAHQELQEAQEH 294 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3333333321111111111124455555555444331 111 2333333333444444444555566677
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCccCCCCCcccccccccccccccccCccccCCCCCCccCCCCCcCCCCCCCCCCcccc
Q 003487 609 IEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGR 688 (816)
Q Consensus 609 i~ALQEEKklLqskLRka~~~gk~~~~~kns~~~kDASTSTdDLai~dd~~~sSn~etlds~s~~s~~~s~~pllpe~G~ 688 (816)
++++..+-..|+..|..++..|.-.-. + . +.. +.+ + |
T Consensus 295 Lea~~qqNqqL~~qls~~~~~~eg~~~--------------~-~----~~~---~ee-----------~---~------- 331 (617)
T PF15070_consen 295 LEALSQQNQQLQAQLSLMALPGEGDGL--------------E-S----ESE---EEE-----------A---P------- 331 (617)
T ss_pred HHHHHhhhHHHHHHHHhhcCCCCCccc--------------c-c----ccc---ccc-----------c---c-------
Confidence 778888888899999987665521100 0 0 000 000 0 0
Q ss_pred cccccccccchhhH---HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHH
Q 003487 689 LALEGLAVNIPHDQ---MRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLE 749 (816)
Q Consensus 689 ~~l~g~~vsIp~DQ---lRmI~NInaLisELa~Ereel~~AL~~es~~~s~Lk~lN~ELsrKLE 749 (816)
-...+||+|. =+|...+|+.+..++.||.+|...|......|..|...-+.+..+.+
T Consensus 332 ----~~~~~ipEd~es~E~m~~f~~~a~~~~eeEr~~L~~qL~eqk~~~q~L~h~va~~q~e~e 391 (617)
T PF15070_consen 332 ----QPMPSIPEDLESREAMVEFFNSALAQAEEERARLRRQLEEQKVQCQHLAHQVASAQKEPE 391 (617)
T ss_pred ----CcCcccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence 0013566653 46788999999999999999999999988888777666555544443
No 22
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.78 E-value=0.27 Score=54.10 Aligned_cols=160 Identities=17% Similarity=0.265 Sum_probs=87.5
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 003487 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRA----LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL 532 (816)
Q Consensus 457 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~----l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~l 532 (816)
.-..+...|+..|+.+..+--.+++.+...++ ..+.|-.+-+.+...+++-..++..|++++..+..++.....+|
T Consensus 178 e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L 257 (562)
T PHA02562 178 ELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAAL 257 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence 34456667777777777776666655555444 34567777778888888888888888777777755544433333
Q ss_pred hhhHHHHHHHhhh----------------hh--------------hHHHHHHHHHHHHHhHHHHHH---HHhhhhhhhHH
Q 003487 533 ESFRNEYANVRLE----------------CN--------------AADERAKILASEVIGLEEKAL---RLRSNELKLER 579 (816)
Q Consensus 533 e~l~aErdaArle----------------~~--------------aA~ERak~LAaEVV~LEEk~l---~LRS~ELKler 579 (816)
..+..++..++.. |. .....-+.|..++-.|++++. +.+..--++++
T Consensus 258 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~ 337 (562)
T PHA02562 258 NKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSK 337 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333332222221 11 111222333333333333333 11112223345
Q ss_pred HHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHH
Q 003487 580 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 616 (816)
Q Consensus 580 ele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEK 616 (816)
.+..+..++..++..+.++.+++..++..|+.|+++.
T Consensus 338 ~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~ 374 (562)
T PHA02562 338 KLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEF 374 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5556666666666666666666666666666666443
No 23
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.71 E-value=0.77 Score=56.94 Aligned_cols=161 Identities=12% Similarity=0.188 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 003487 464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSL-------TDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR 536 (816)
Q Consensus 464 aLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaL-------Td~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~ 536 (816)
-|+..|+.+...+-.+...+....+..+.|..-++.. ...+......+.++.++++.++.++.-....++.+.
T Consensus 699 ~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~ 778 (1311)
T TIGR00606 699 DLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIM 778 (1311)
T ss_pred HHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566655556677777777777777766443332 233333444455555555555555555555555555
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhh--hhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHH
Q 003487 537 NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNEL--KLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE 614 (816)
Q Consensus 537 aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~EL--Klerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQE 614 (816)
.+.+.+.. +-.-..-...+..|+..|+.++-++....- ...+.++.+..++..+++++..+.++...++...+.+++
T Consensus 779 ~~~~~~es-L~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~ 857 (1311)
T TIGR00606 779 PEEESAKV-CLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQE 857 (1311)
T ss_pred HhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555433 222233334457788888887776644222 112456778888888888888888888888888888888
Q ss_pred HHHHHHHHHHh
Q 003487 615 EKKMMQSKLRK 625 (816)
Q Consensus 615 EKklLqskLRk 625 (816)
+-+.||.++.+
T Consensus 858 eI~~Lq~ki~e 868 (1311)
T TIGR00606 858 QIQHLKSKTNE 868 (1311)
T ss_pred HHHHHHHHHHH
Confidence 88888777765
No 24
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.65 E-value=0.42 Score=50.04 Aligned_cols=133 Identities=17% Similarity=0.269 Sum_probs=56.2
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHH-------HHHHhHHHHHH
Q 003487 496 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILA-------SEVIGLEEKAL 568 (816)
Q Consensus 496 ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LA-------aEVV~LEEk~l 568 (816)
+...+..+.+.-...+.++..+++.++.+++.....++.++.+.+.++... .|.+.|- .++...+.++.
T Consensus 131 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~----~~~~~L~~~g~is~~~~~~~~~~~~ 206 (423)
T TIGR01843 131 QQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEEL----EARRKLKEKGLVSRLELLELERERA 206 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 333333444444444445555555555554444444444444444444322 1222222 22333333444
Q ss_pred HHhhhhhhhHHHHhhhHHHHHHHHHHhhhH--------HHhhhhhHHHHHHHHHHHHHHHHHHH----hhcCCCCc
Q 003487 569 RLRSNELKLERQLENSQSEISSYKKKISSL--------EKERQDFQSTIEALQEEKKMMQSKLR----KASGSGKS 632 (816)
Q Consensus 569 ~LRS~ELKlerele~l~~E~~s~~rqlssl--------ekeR~~lqsti~ALQEEKklLqskLR----ka~~~gk~ 632 (816)
+++.+...++.++..+..++..++.++..+ ..++..++..+..++.+...++.+|. +++-.|..
T Consensus 207 ~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~i~AP~dG~V 282 (423)
T TIGR01843 207 EAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQRLIIRSPVDGTV 282 (423)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEECCCCcEE
Confidence 444444444444444444444444333322 22233344444444444444444444 25555655
No 25
>PRK09039 hypothetical protein; Validated
Probab=96.59 E-value=0.26 Score=53.31 Aligned_cols=67 Identities=22% Similarity=0.260 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHH
Q 003487 547 NAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 613 (816)
Q Consensus 547 ~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQ 613 (816)
+++..|+..|..+...+....-+.+.+..+|+.|++.|+..+.+++..|.++++.-.+.+.-|+.|+
T Consensus 112 ~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~ 178 (343)
T PRK09039 112 AAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLG 178 (343)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666666666666666666666666555555555555444
No 26
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.56 E-value=0.18 Score=54.27 Aligned_cols=10 Identities=10% Similarity=0.381 Sum_probs=6.1
Q ss_pred ccccccCCch
Q 003487 450 QHGFYSTKHN 459 (816)
Q Consensus 450 ~~~F~s~~~~ 459 (816)
|.+||+.+.+
T Consensus 101 F~EY~~a~~d 110 (312)
T smart00787 101 FKEYFSASPD 110 (312)
T ss_pred HHHHHcCCHH
Confidence 6777765443
No 27
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.48 E-value=0.38 Score=46.48 Aligned_cols=126 Identities=19% Similarity=0.302 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHH
Q 003487 486 SRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE 565 (816)
Q Consensus 486 s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEE 565 (816)
+.+-++.|...+-.|-+++-+....|..|+..+.+|+.+|..-...|..++.-.+..-..... +-.|-.-|-.||+
T Consensus 12 a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~----~E~l~rriq~LEe 87 (143)
T PF12718_consen 12 AQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSN----AEQLNRRIQLLEE 87 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh----HHHHHhhHHHHHH
Confidence 334444444444444444444444555555555555544443333333332222111111111 1134444555555
Q ss_pred HHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHH
Q 003487 566 KALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE 615 (816)
Q Consensus 566 k~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEE 615 (816)
.+-+.-..---....|..+...+..++|++.+|+.+|..+..-++.|...
T Consensus 88 ele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k 137 (143)
T PF12718_consen 88 ELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEK 137 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 55444333223344455555666777777777777777666665555443
No 28
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.43 E-value=0.52 Score=49.56 Aligned_cols=102 Identities=24% Similarity=0.302 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-------HHHHhhhh--HHHH
Q 003487 469 IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV-------QLVELESF--RNEY 539 (816)
Q Consensus 469 IeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~a-------Q~~~le~l--~aEr 539 (816)
|..|..+++.|.+-..-.++..+.+-.|-+++-++|=..--.+..|+.++-+++.+|+. -...+.++ .-||
T Consensus 12 iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~ 91 (239)
T COG1579 12 IQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDEREL 91 (239)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 33455566666555555555555555555555555555555555555555555555443 33333333 5678
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHhHHHHHHHH
Q 003487 540 ANVRLECNAADERAKILASEVIGLEEKALRL 570 (816)
Q Consensus 540 daArle~~aA~ERak~LAaEVV~LEEk~l~L 570 (816)
.+...+...|.+|...|-.|++.|.++.-.+
T Consensus 92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l 122 (239)
T COG1579 92 RALNIEIQIAKERINSLEDELAELMEEIEKL 122 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999988887776644
No 29
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.43 E-value=0.87 Score=55.09 Aligned_cols=64 Identities=22% Similarity=0.256 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 003487 464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV 527 (816)
Q Consensus 464 aLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~a 527 (816)
..+|..-+....|+.|-+.+..+|+..+++-.-+.+|-=.+++|.-...+-..+-|||++|.+-
T Consensus 334 ~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaq 397 (980)
T KOG0980|consen 334 QIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQ 397 (980)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888899999999999999999999999999999999999998888888888887543
No 30
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.42 E-value=0.27 Score=60.71 Aligned_cols=164 Identities=23% Similarity=0.279 Sum_probs=104.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHH---
Q 003487 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ----QRSVVNQLKSEMEKLQEEIKVQL--- 529 (816)
Q Consensus 457 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNq----Q~~~v~qLk~dmEqLq~Ei~aQ~--- 529 (816)
...+.-+-|++.|+.++.+...|+| ++.+|++.=..|+......-++ .-..+.+++++|+-+++..+.-+
T Consensus 462 ~~~~~~keL~e~i~~lk~~~~el~~---~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~ 538 (1317)
T KOG0612|consen 462 ELEEMDKELEETIEKLKSEESELQR---EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSL 538 (1317)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667899999999999999998 4444444443333322222222 23345556666666655544442
Q ss_pred HHhhhhHHHHHHHhhhhhhHHH--------------HHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHh
Q 003487 530 VELESFRNEYANVRLECNAADE--------------RAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKI 595 (816)
Q Consensus 530 ~~le~l~aErdaArle~~aA~E--------------Rak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rql 595 (816)
-.+.+++.+.+.+.+.+.+..+ +-+.+..++-.+|+++-.+-..+.++-++..+++.+.+.++++-
T Consensus 539 ~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~ 618 (1317)
T KOG0612|consen 539 EKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQR 618 (1317)
T ss_pred hhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334445666666666664444 23334456678899999898888999999889998888888887
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 003487 596 SSLEKERQDFQSTIEALQEEKKMMQSKL 623 (816)
Q Consensus 596 sslekeR~~lqsti~ALQEEKklLqskL 623 (816)
-.+..++.+++..|.-||+.-+.+...+
T Consensus 619 ~~~~e~~~~l~~~i~sL~~~~~~~~~~l 646 (1317)
T KOG0612|consen 619 TEISEIIAELKEEISSLEETLKAGKKEL 646 (1317)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhhhhHH
Confidence 7776667666666666664443333333
No 31
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.39 E-value=4.6 Score=50.95 Aligned_cols=111 Identities=16% Similarity=0.263 Sum_probs=59.7
Q ss_pred ccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-----hhHHHHHHHHHHHHHH
Q 003487 448 ENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ-----QRSVVNQLKSEMEKLQ 522 (816)
Q Consensus 448 e~~~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNq-----Q~~~v~qLk~dmEqLq 522 (816)
+-..+|.-+.++.++..|.+-|++|.+-+-.|.+.-++-.+| +.+... -+.||+ ....+-..+.+++.++
T Consensus 208 ~~l~~~l~~l~~~~i~~l~e~~~~~~~~~~~le~l~~~~~~l-~~i~~~----y~~y~~~~~~~~~~~~~~~~~~~~~~~ 282 (1353)
T TIGR02680 208 DALTEALPPLDDDELTDVADALEQLDEYRDELERLEALERAL-RNFLQR----YRRYARTMLRRRATRLRSAQTQYDQLS 282 (1353)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888899999999999988887776665543333333 333322 334443 2233333444444455
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhH
Q 003487 523 EEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL 563 (816)
Q Consensus 523 ~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~L 563 (816)
.++......++....++..+........++-..+-.|+..|
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l 323 (1353)
T TIGR02680 283 RDLGRARDELETAREEERELDARTEALEREADALRTRLEAL 323 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 54444444445555555554444444444444444444433
No 32
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.37 E-value=0.76 Score=52.14 Aligned_cols=122 Identities=26% Similarity=0.293 Sum_probs=91.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhh-------h
Q 003487 503 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNE-------L 575 (816)
Q Consensus 503 ~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~E-------L 575 (816)
........+.+.+..|+....|+..=...+++|+.|..+.+.+.....+|-....++|..|+.++.++|+.- -
T Consensus 282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~ 361 (522)
T PF05701_consen 282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEE 361 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 356667777788888888888888888999999999999999999999999999999999999999998764 1
Q ss_pred -------hhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 003487 576 -------KLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 624 (816)
Q Consensus 576 -------Klerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLR 624 (816)
.+...|+.+..|.+.+++.......+...+...++...-.-+-++.||+
T Consensus 362 ~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~ 417 (522)
T PF05701_consen 362 KAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLE 417 (522)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334455555555556655555555555555555555555555556665
No 33
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.32 E-value=0.95 Score=47.49 Aligned_cols=90 Identities=19% Similarity=0.292 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhH----HHHHHHHhhhhhhhHHHHhhhHHH
Q 003487 512 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL----EEKALRLRSNELKLERQLENSQSE 587 (816)
Q Consensus 512 ~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~L----EEk~l~LRS~ELKlerele~l~~E 587 (816)
..++.++++++.++......++.+..+...++.....+.++-... ...+.- +.+.+..+.....++.++..+..+
T Consensus 140 ~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~-~~L~~~g~is~~~~~~~~~~~~~~~~~l~~~~~~ 218 (423)
T TIGR01843 140 STLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEAR-RKLKEKGLVSRLELLELERERAEAQGELGRLEAE 218 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344444555555554444444444444444444443333221110 111110 234444444555555555555555
Q ss_pred HHHHHHHhhhHHHhh
Q 003487 588 ISSYKKKISSLEKER 602 (816)
Q Consensus 588 ~~s~~rqlsslekeR 602 (816)
+..++.++..++.+.
T Consensus 219 l~~~~~~l~~~~~~~ 233 (423)
T TIGR01843 219 LEVLKRQIDELQLER 233 (423)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555554443
No 34
>PRK03918 chromosome segregation protein; Provisional
Probab=96.28 E-value=0.77 Score=53.45 Aligned_cols=84 Identities=21% Similarity=0.269 Sum_probs=39.4
Q ss_pred HHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHh-----hhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhh
Q 003487 530 VELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR-----SNELKLERQLENSQSEISSYKKKISSLEKERQD 604 (816)
Q Consensus 530 ~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LR-----S~ELKlerele~l~~E~~s~~rqlsslekeR~~ 604 (816)
..++.+..++...+..+....+....|..++-.|++++-.++ ...-.++++++.+..++..+++++..++++-..
T Consensus 612 ~~l~~~~~~l~~~~~~l~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~ 691 (880)
T PRK03918 612 KELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREE 691 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444455555555555555555555555554 333334444444444444444444444444444
Q ss_pred hHHHHHHHH
Q 003487 605 FQSTIEALQ 613 (816)
Q Consensus 605 lqsti~ALQ 613 (816)
+...|+.++
T Consensus 692 l~~~i~~~~ 700 (880)
T PRK03918 692 IKKTLEKLK 700 (880)
T ss_pred HHHHHHHHH
Confidence 444444443
No 35
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=96.20 E-value=0.058 Score=57.57 Aligned_cols=118 Identities=23% Similarity=0.329 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 003487 462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 541 (816)
Q Consensus 462 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErda 541 (816)
+..|+++++++..|+-.+++-|.+-+ .=......+.++..+++.|++|...-..+|+.+..|++.
T Consensus 11 ~~~l~~~~~~~~~E~~~Y~~fL~~l~---------------~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~ 75 (314)
T PF04111_consen 11 LEQLDKQLEQAEKERDTYQEFLKKLE---------------EESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREE 75 (314)
T ss_dssp ----------------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------hcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688899999999999999888776 001123345666777777777766666666666666655
Q ss_pred HhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHH
Q 003487 542 VRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE 615 (816)
Q Consensus 542 Arle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEE 615 (816)
|..|...||++..++..+|.+.- .+...+..++....++|+.+..-++.++++
T Consensus 76 --------------l~~el~~le~e~~~l~~eE~~~~-------~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~ 128 (314)
T PF04111_consen 76 --------------LDQELEELEEELEELDEEEEEYW-------REYNELQLELIEFQEERDSLKNQYEYASNQ 128 (314)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556665555543333322 233334444444445555544444444443
No 36
>PRK03918 chromosome segregation protein; Provisional
Probab=96.18 E-value=1.2 Score=51.89 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=12.3
Q ss_pred hhhhhHHHHHHHHHHHHHhHHHHHHHH
Q 003487 544 LECNAADERAKILASEVIGLEEKALRL 570 (816)
Q Consensus 544 le~~aA~ERak~LAaEVV~LEEk~l~L 570 (816)
..+..-.++.+.+-.|+..|++++-++
T Consensus 252 ~~~~~l~~~i~~l~~el~~l~~~l~~l 278 (880)
T PRK03918 252 GSKRKLEEKIRELEERIEELKKEIEEL 278 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444555555555554443
No 37
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.15 E-value=0.57 Score=45.29 Aligned_cols=131 Identities=20% Similarity=0.297 Sum_probs=107.8
Q ss_pred HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHH
Q 003487 491 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 570 (816)
Q Consensus 491 EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~L 570 (816)
+.|=.|.+.+.+++.+-...+.+|.....+++++|..=.-.+..+-.|.+.++.....+.+..-....-+...| .+.-
T Consensus 3 ~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E--~l~r 80 (143)
T PF12718_consen 3 QALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE--QLNR 80 (143)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH--HHHh
Confidence 56777889999999999999999999999999999999999999999999999988888877766665544444 3434
Q ss_pred hhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 003487 571 RSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625 (816)
Q Consensus 571 RS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRk 625 (816)
|.+.| |.+|+.+...+..+..++..+.+.-.++.--+.+|..++.-+-.|+-.
T Consensus 81 riq~L--Eeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~ee 133 (143)
T PF12718_consen 81 RIQLL--EEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEE 133 (143)
T ss_pred hHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44444 888999888888999999988888888888888888887776666653
No 38
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.12 E-value=0.54 Score=53.56 Aligned_cols=146 Identities=19% Similarity=0.277 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHH
Q 003487 479 LQRSLEASRALSESLAAENSSLTDSYN---QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 555 (816)
Q Consensus 479 LqR~L~~s~~l~EsLA~ENsaLTd~yN---qQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~ 555 (816)
+.+.|...++..+.|..|-+.|..+|- .-...+.+++.+++.++.++..-...+..-...|...+-++....++-..
T Consensus 315 l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~lee 394 (569)
T PRK04778 315 LPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEE 394 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 556677778888888888888888863 33556777788888888887766667777777788888999999999999
Q ss_pred HHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhh--HHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 003487 556 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISS--LEKERQDFQSTIEALQEEKKMMQSKLR 624 (816)
Q Consensus 556 LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlss--lekeR~~lqsti~ALQEEKklLqskLR 624 (816)
+-.+...+.+.+..||..|..++..++.++..++.+++.+.. +-.--......+..++++-+.|..+|.
T Consensus 395 ie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~ 465 (569)
T PRK04778 395 IEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELE 465 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999988888888877762 111123445556666666666666665
No 39
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=96.09 E-value=2.9 Score=45.79 Aligned_cols=41 Identities=37% Similarity=0.528 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 003487 463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDS 503 (816)
Q Consensus 463 aaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~ 503 (816)
-.|+--|..|.+|---|...|+.-+.-+..|..||.+|-..
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~ 63 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREA 63 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777788888888888888888888889999999888654
No 40
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.09 E-value=1.9 Score=43.79 Aligned_cols=161 Identities=22% Similarity=0.321 Sum_probs=86.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 003487 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 539 (816)
Q Consensus 460 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aEr 539 (816)
.+++.|+.+|+++..|--.|.+---++..--.-.-+.+..|-+--..-...|-.|+..+.+.+....+---.+-..-+|.
T Consensus 19 n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el 98 (194)
T PF15619_consen 19 NELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEEL 98 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888777666666554444444444444444444444455555555544443322222222222222
Q ss_pred HHHhhhhh---------hHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHH
Q 003487 540 ANVRLECN---------AADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE 610 (816)
Q Consensus 540 daArle~~---------aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ 610 (816)
-..+-.+. .=.|| ..|..++-.++.++..---.--.|+++++-.. ..+.+++.+-.+--.+++..+.
T Consensus 99 ~k~~~~l~~L~~L~~dknL~eR-eeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~---k~~~rql~~e~kK~~~~~~~~~ 174 (194)
T PF15619_consen 99 LKTKDELKHLKKLSEDKNLAER-EELQRKLSQLEQKLQEKEKKIQELEKQLELEN---KSFRRQLASEKKKHKEAQEEVK 174 (194)
T ss_pred HHHHHHHHHHHHHHHcCCchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHH
Confidence 21111111 11122 22344444444444332222223344444333 5667777766677778899999
Q ss_pred HHHHHHHHHHHHHH
Q 003487 611 ALQEEKKMMQSKLR 624 (816)
Q Consensus 611 ALQEEKklLqskLR 624 (816)
.|++|-..|+.+|.
T Consensus 175 ~l~~ei~~L~~klk 188 (194)
T PF15619_consen 175 SLQEEIQRLNQKLK 188 (194)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999987
No 41
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=96.03 E-value=0.25 Score=47.90 Aligned_cols=64 Identities=27% Similarity=0.407 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHh
Q 003487 508 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 571 (816)
Q Consensus 508 ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LR 571 (816)
...+.++..++.++++.+......+..++.++...+.......+|-+.+..++-.+++++..++
T Consensus 87 ~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 87 QQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666667777666666666666666666666666666666666665
No 42
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.94 E-value=2.5 Score=43.79 Aligned_cols=35 Identities=31% Similarity=0.373 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHH
Q 003487 711 ALISELALEKEELVQALSSELAQSSKLKDLNNELS 745 (816)
Q Consensus 711 aLisELa~Ereel~~AL~~es~~~s~Lk~lN~ELs 745 (816)
+.|..++.|...+...+..-...+.+|-+.+.-|.
T Consensus 262 ~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld 296 (312)
T PF00038_consen 262 AEIAELEEELAELREEMARQLREYQELLDVKLALD 296 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33555555555555555555555555555554443
No 43
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.89 E-value=0.61 Score=55.11 Aligned_cols=159 Identities=25% Similarity=0.307 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------hh----h
Q 003487 466 EQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE-------LE----S 534 (816)
Q Consensus 466 qqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~-------le----~ 534 (816)
...|.-|-.|--.|...|+.+|.+=+.|=..-..|+..=..-...+.+|+.+.|+||..+..--.+ +. .
T Consensus 417 ~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkr 496 (697)
T PF09726_consen 417 PDAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKR 496 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888899999999999888888777777655577788888888888888754321111 11 1
Q ss_pred hHHH-HHHHhhhhhhHHHHHHHHHHHHHhHH----------HHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhh
Q 003487 535 FRNE-YANVRLECNAADERAKILASEVIGLE----------EKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQ 603 (816)
Q Consensus 535 l~aE-rdaArle~~aA~ERak~LAaEVV~LE----------Ek~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~ 603 (816)
+++| +.++.+|..-+.||....++|-..-. |-+-.+|.-.=.||.|+..|+.|+...+.++..+++|.+
T Consensus 497 L~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~ 576 (697)
T PF09726_consen 497 LAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQ 576 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333 23344555555555444443322111 111112222233355555566666666666666655555
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 003487 604 DFQSTIEALQEEKKMMQSKLR 624 (816)
Q Consensus 604 ~lqsti~ALQEEKklLqskLR 624 (816)
+|+.....-+.|-..|.+.|+
T Consensus 577 ~lr~~~~e~~~~~e~L~~aL~ 597 (697)
T PF09726_consen 577 ELRKYEKESEKDTEVLMSALS 597 (697)
T ss_pred HHHHHHhhhhhhHHHHHHHHH
Confidence 555432112334445555554
No 44
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.87 E-value=2.5 Score=43.65 Aligned_cols=158 Identities=22% Similarity=0.320 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 003487 462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYN---QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE 538 (816)
Q Consensus 462 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yN---qQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aE 538 (816)
++-|+.-=..|+.|=-.|+|.++..-+.+..|+.|+..|-..+= +--.....|++++|.|+.. +..+-++
T Consensus 10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~-------~~~lEE~ 82 (193)
T PF14662_consen 10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTL-------AKSLEEE 82 (193)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 44556566667788888999999999999999999888876653 2223344556666666654 2344445
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHh---------------------hh
Q 003487 539 YANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKI---------------------SS 597 (816)
Q Consensus 539 rdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rql---------------------ss 597 (816)
+.-..-.|-....-.+.|.++|-.|.++-.++-.+.=++.+..+.|..+...+.+|| ..
T Consensus 83 ~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~e 162 (193)
T PF14662_consen 83 NRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEE 162 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 444444444555556777788877777766665555555555555544444444444 22
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 003487 598 LEKERQDFQSTIEALQEEKKMMQSKLRKA 626 (816)
Q Consensus 598 lekeR~~lqsti~ALQEEKklLqskLRka 626 (816)
+.+-=.+..++.+.|.-||.+|...|+++
T Consensus 163 L~~~ieEy~~~teeLR~e~s~LEeql~q~ 191 (193)
T PF14662_consen 163 LKKTIEEYRSITEELRLEKSRLEEQLSQM 191 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22222344455666667777777777543
No 45
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.79 E-value=0.97 Score=57.41 Aligned_cols=135 Identities=16% Similarity=0.233 Sum_probs=77.0
Q ss_pred HHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhh-
Q 003487 494 AAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS- 572 (816)
Q Consensus 494 A~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS- 572 (816)
..+-+.|..+..++...+.+++.+++.++.++..-...++.++.++...+.....+..++..+...|..|+. +.++--
T Consensus 354 ~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~-~~~~~~~ 432 (1486)
T PRK04863 354 QADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALER-AKQLCGL 432 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCC
Confidence 334444555555555555566666666665555555555555555555555555555555555555544432 111110
Q ss_pred hhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh-hcCCCCcc
Q 003487 573 NELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK-ASGSGKSI 633 (816)
Q Consensus 573 ~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRk-a~~~gk~~ 633 (816)
..| ..++|...+..|..++..++.++.+++.-++.++.+++-+..++.. ....|++.
T Consensus 433 ~~~----SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~ 490 (1486)
T PRK04863 433 PDL----TADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVS 490 (1486)
T ss_pred CCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC
Confidence 111 1234666667777777777777777777777777777777666664 55666753
No 46
>PRK09039 hypothetical protein; Validated
Probab=95.68 E-value=2 Score=46.59 Aligned_cols=57 Identities=19% Similarity=0.261 Sum_probs=29.8
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhH
Q 003487 535 FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL 598 (816)
Q Consensus 535 l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlssl 598 (816)
+..+.++.+..++++.-....|-.||-.|++++-.+ +.+|..+..+....+.++..+
T Consensus 121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~l-------e~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLAAL-------EAALDASEKRDRESQAKIADL 177 (343)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666655555555555555554433 444444444444444444433
No 47
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=95.66 E-value=1.2 Score=50.83 Aligned_cols=128 Identities=13% Similarity=0.230 Sum_probs=78.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhh----hHHHHHHHHHHHHHh
Q 003487 487 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECN----AADERAKILASEVIG 562 (816)
Q Consensus 487 ~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~----aA~ERak~LAaEVV~ 562 (816)
+.+.+.|+.....+. ++++......++..++.++++++..+...+..+.+..++.|.... .-.+--+.|..|--.
T Consensus 39 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~ 117 (475)
T PRK10361 39 EEMVAELSAAKQQIT-QSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFEN 117 (475)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555 455555555566666666666655555555555444333332221 122223456667777
Q ss_pred HHHHHHHHhhhhhhhHHH------HhhhHHHHHHHHHHhhhHH----HhhhhhHHHHHHHHHH
Q 003487 563 LEEKALRLRSNELKLERQ------LENSQSEISSYKKKISSLE----KERQDFQSTIEALQEE 615 (816)
Q Consensus 563 LEEk~l~LRS~ELKlere------le~l~~E~~s~~rqlssle----keR~~lqsti~ALQEE 615 (816)
|=.++++-++..+.-.++ |.=++..+..++++|..++ ++|..|...|..|++-
T Consensus 118 LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~ 180 (475)
T PRK10361 118 LANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQL 180 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788777777764443 3448889999999999887 4578888888777653
No 48
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=95.62 E-value=1.2 Score=46.35 Aligned_cols=115 Identities=23% Similarity=0.272 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 003487 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 540 (816)
Q Consensus 461 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErd 540 (816)
-+..|+|+|.|+-.+ |.+++.-+.++-+.--.+-++||+....+..++..-+ .+|..=..+.+
T Consensus 25 p~~~l~Q~ird~~~~-------l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~----------~Al~~g~E~LA 87 (225)
T COG1842 25 PEKMLEQAIRDMESE-------LAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAE----------LALQAGNEDLA 87 (225)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHCCCHHHH
Confidence 348999999998655 5555444444444555566677665554444433321 11111111111
Q ss_pred HHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhH
Q 003487 541 NVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL 598 (816)
Q Consensus 541 aArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlssl 598 (816)
..|-+|-+.|.-.+-.++..+.+++....++++.+..|...|..++.+...+
T Consensus 88 ------r~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l 139 (225)
T COG1842 88 ------REALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEAL 139 (225)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666667777777777777777777777766644
No 49
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.61 E-value=1.6 Score=49.81 Aligned_cols=165 Identities=15% Similarity=0.225 Sum_probs=121.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 003487 458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN 537 (816)
Q Consensus 458 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~a 537 (816)
-..++..|++.|.+.-.-=-.| .|..+.+.++.+..+-+.|.+.+..-...-..+...+..+...+....-.+..+..
T Consensus 254 i~~~i~~l~~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~ 331 (569)
T PRK04778 254 IEKEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKE 331 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4677888887777732111111 35677788888888888888888887777788888888888888888888889999
Q ss_pred HHHHHhhhhh---hHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHH
Q 003487 538 EYANVRLECN---AADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE 614 (816)
Q Consensus 538 ErdaArle~~---aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQE 614 (816)
|.+..++.+. .-.++.+.+..++-.|++++..+.-.--+.......+..+...+.+++..+++++..+...|+.|+.
T Consensus 332 Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk 411 (569)
T PRK04778 332 EIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRK 411 (569)
T ss_pred HHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888854 3467888888888888888886654444444446667778888888888888888888888888875
Q ss_pred HHHHHHHHHH
Q 003487 615 EKKMMQSKLR 624 (816)
Q Consensus 615 EKklLqskLR 624 (816)
+-..+..+|.
T Consensus 412 ~E~eAr~kL~ 421 (569)
T PRK04778 412 DELEAREKLE 421 (569)
T ss_pred HHHHHHHHHH
Confidence 5544444444
No 50
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.56 E-value=0.54 Score=49.44 Aligned_cols=115 Identities=26% Similarity=0.343 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHh---------hhhhhhHHHH
Q 003487 511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR---------SNELKLERQL 581 (816)
Q Consensus 511 v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LR---------S~ELKlerel 581 (816)
+..|--++.+|...+.-+.-+|+.+++|..++.-...+.......|--+|..||..+..+| ....|.++++
T Consensus 12 iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~ 91 (239)
T COG1579 12 IQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDEREL 91 (239)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 3344444444444444444444444444444444444444444444444444444443333 2455666777
Q ss_pred hhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 003487 582 ENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625 (816)
Q Consensus 582 e~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRk 625 (816)
..|..|+...+++..+|+.+=.+|...++.|+++...|+.++.+
T Consensus 92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~ 135 (239)
T COG1579 92 RALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLER 135 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888888888888888888887777777763
No 51
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.56 E-value=2.5 Score=45.27 Aligned_cols=60 Identities=18% Similarity=0.318 Sum_probs=29.2
Q ss_pred ccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHhhhHHHHHHHHhhHHHHHHH
Q 003487 450 QHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASR--------------ALSESLAAENSSLTDSYNQQRSVVNQLK 515 (816)
Q Consensus 450 ~~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~--------------~l~EsLA~ENsaLTd~yNqQ~~~v~qLk 515 (816)
|.+||+.+.+.- .+-...|.+.+...+.+ .|-+.|...-+.|-..++.-...+..|.
T Consensus 106 f~EY~~a~~d~r---------~~m~~q~~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~ 176 (325)
T PF08317_consen 106 FREYYTADPDMR---------LLMDNQFQLVKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLD 176 (325)
T ss_pred HHHHHcCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778887754321 12233444444444433 3445555555555555554444444443
Q ss_pred HHH
Q 003487 516 SEM 518 (816)
Q Consensus 516 ~dm 518 (816)
.-+
T Consensus 177 ~~~ 179 (325)
T PF08317_consen 177 ELL 179 (325)
T ss_pred HHH
Confidence 333
No 52
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.48 E-value=0.71 Score=58.53 Aligned_cols=101 Identities=18% Similarity=0.220 Sum_probs=61.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHH
Q 003487 504 YNQQRSVVNQLKSEMEKLQEEIKVQLVEL---ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQ 580 (816)
Q Consensus 504 yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~l---e~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlere 580 (816)
.......+..|+.++..+++++..+...+ .....+++.|+.=|..++=--.-|....-.+++++.++....+.++.+
T Consensus 385 leelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~k 464 (1486)
T PRK04863 385 AEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQK 464 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444433333333333332 223455556666665444333446666777888888888888888999
Q ss_pred HhhhHHHHHHHHHHhhhHHHhhhh
Q 003487 581 LENSQSEISSYKKKISSLEKERQD 604 (816)
Q Consensus 581 le~l~~E~~s~~rqlsslekeR~~ 604 (816)
+..+..+++.++++...+-++-|.
T Consensus 465 L~~lea~leql~~~~~~l~~~~Gk 488 (1486)
T PRK04863 465 LSVAQAAHSQFEQAYQLVRKIAGE 488 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999988888776665444
No 53
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.39 E-value=2.5 Score=53.12 Aligned_cols=51 Identities=18% Similarity=0.194 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhhhHHHHHH
Q 003487 708 NINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLT 759 (816)
Q Consensus 708 NInaLisELa~Ereel~~AL~~es~~~s~Lk~lN~ELsrKLE~qTQRLELlt 759 (816)
.+.+|+.+|+.+.++....|....+++=+ .-|-.++.++|-...++=|-++
T Consensus 1083 ~~~~l~~~l~~~i~~~~~ll~e~er~l~E-~~L~~~v~~~l~~ri~~A~~~v 1133 (1353)
T TIGR02680 1083 TPAGLLARLEQEIAQRRELLTARERELLE-NHLQGEIARHLQSLILAAERQV 1133 (1353)
T ss_pred CHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777776666555432 2344555555555555555444
No 54
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.37 E-value=0.17 Score=50.19 Aligned_cols=116 Identities=22% Similarity=0.282 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 003487 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 539 (816)
Q Consensus 460 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aEr 539 (816)
.-.+.|++-+.++-..|-.++--|-....-.+.|-.+......+-+.....+..|+.++..|..+|+.....++.+..|+
T Consensus 74 ~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~ 153 (194)
T PF08614_consen 74 QKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDEL 153 (194)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555667777766766667777777777778888888889999999999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhh
Q 003487 540 ANVRLECNAADERAKILASEVIGLEEKALRLRSNEL 575 (816)
Q Consensus 540 daArle~~aA~ERak~LAaEVV~LEEk~l~LRS~EL 575 (816)
.+.+++++.+.++.+.|-.|=-.|=+|.++.+..+-
T Consensus 154 ~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~eA 189 (194)
T PF08614_consen 154 QALQLQLNMLEEKLRKLEEENRELVERWMQRKAQEA 189 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999997765543
No 55
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.33 E-value=3.9 Score=41.87 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 003487 462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ 506 (816)
Q Consensus 462 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNq 506 (816)
++.|++-||+.-..--.++..|..+..-++.+-.|..+|.++...
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~ 47 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQL 47 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777777777777777777777766543
No 56
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.29 E-value=0.069 Score=52.85 Aligned_cols=27 Identities=37% Similarity=0.459 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003487 497 NSSLTDSYNQQRSVVNQLKSEMEKLQE 523 (816)
Q Consensus 497 NsaLTd~yNqQ~~~v~qLk~dmEqLq~ 523 (816)
|..|...||+....+..|+..-..|+.
T Consensus 19 ~~~li~ay~~L~d~~~~l~~~~~~l~~ 45 (194)
T PF08614_consen 19 FAELIDAYNRLADRTSLLKAENEQLQP 45 (194)
T ss_dssp ---------------------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 334555555555555555555555554
No 57
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=95.28 E-value=1.8 Score=53.50 Aligned_cols=166 Identities=23% Similarity=0.341 Sum_probs=111.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 003487 458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE-----NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL 532 (816)
Q Consensus 458 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~E-----NsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~l 532 (816)
+..+...|+.+|+|+ +||+.-.+.++--.+.-++|-++ .=...+.||.|...+.-.+..+..|++.+.-+...+
T Consensus 233 ~~e~i~~l~k~i~e~-~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~ 311 (1074)
T KOG0250|consen 233 KEEEIKNLKKKIKEE-EEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKI 311 (1074)
T ss_pred HHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999987 56777555555555544444433 334678899998888777777777777776665555
Q ss_pred hhh--------------HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHH-------HHhhhhhhhHHHHhhhHHH----
Q 003487 533 ESF--------------RNEYANVRLECNAADERAKILASEVIGLEEKAL-------RLRSNELKLERQLENSQSE---- 587 (816)
Q Consensus 533 e~l--------------~aErdaArle~~aA~ERak~LAaEVV~LEEk~l-------~LRS~ELKlerele~l~~E---- 587 (816)
+.+ +.|-++---+|..|.+..+.+..||..|++++. ++++.-=.++|++..++.+
T Consensus 312 ~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~ 391 (1074)
T KOG0250|consen 312 EEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNE 391 (1074)
T ss_pred HHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 544 466666667888999999999999999887654 3444444455665554443
Q ss_pred ----HHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 003487 588 ----ISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 624 (816)
Q Consensus 588 ----~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLR 624 (816)
+...+.++..|+++.-.|+..+..|.+|...++.+++
T Consensus 392 ~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~ 432 (1074)
T KOG0250|consen 392 LGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAK 432 (1074)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666666666666666665
No 58
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.15 E-value=4.8 Score=41.76 Aligned_cols=34 Identities=29% Similarity=0.489 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003487 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESL 493 (816)
Q Consensus 460 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsL 493 (816)
.+...|.+-|++++.||-.|+-.+...+.-++.+
T Consensus 54 ~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~ 87 (312)
T PF00038_consen 54 EELRELRRQIDDLSKEKARLELEIDNLKEELEDL 87 (312)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHH
Confidence 4566777888888888888877777666555554
No 59
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=95.13 E-value=1.7 Score=51.67 Aligned_cols=106 Identities=19% Similarity=0.297 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHH
Q 003487 514 LKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKK 593 (816)
Q Consensus 514 Lk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~r 593 (816)
.+.++|..++.-+.|+. .+..++.. +.......+..|-..+-.||.+...+.+.--..+++.+.|+..++....
T Consensus 138 ~q~ELee~q~~Hqeql~---~Lt~aHq~---~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~ 211 (739)
T PF07111_consen 138 SQRELEEAQRLHQEQLS---SLTQAHQE---ALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQE 211 (739)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 35566666665555544 33333333 3345566777777777777777666655555556666666666655554
Q ss_pred Hhhh------------------------HHHhhhhhHHHHHHHHHHH-------HHHHHHHHh
Q 003487 594 KISS------------------------LEKERQDFQSTIEALQEEK-------KMMQSKLRK 625 (816)
Q Consensus 594 qlss------------------------lekeR~~lqsti~ALQEEK-------klLqskLRk 625 (816)
.+++ -+-||++|..+|..||||| -+||+|+..
T Consensus 212 ~le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqS 274 (739)
T PF07111_consen 212 ELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQHLQEDRDALQATAELLQVRVQS 274 (739)
T ss_pred HHHHHHHHHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 2679999999999999999 567777773
No 60
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.02 E-value=2.5 Score=52.13 Aligned_cols=164 Identities=21% Similarity=0.304 Sum_probs=89.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 003487 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE 538 (816)
Q Consensus 459 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aE 538 (816)
.++...|..-|+++-++=-..+|++-..++-..+|. ..+.+.++.++..+++|+.+++.+.+.++++...++.-.-|
T Consensus 740 ~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE---~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e 816 (1174)
T KOG0933|consen 740 LDDLKELLEEVEESEQQIKEKERALKKCEDKISTLE---KKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENE 816 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444554444445555555554444443 34677788888888888888877777777777666666666
Q ss_pred HHHHhhhhhhH--------------HHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHH------------
Q 003487 539 YANVRLECNAA--------------DERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYK------------ 592 (816)
Q Consensus 539 rdaArle~~aA--------------~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~------------ 592 (816)
|.+.+++|.+- ..--..|.+|+-.|+.++...-.+.-+++.++...+..++-+.
T Consensus 817 ~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~ 896 (1174)
T KOG0933|consen 817 YERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEK 896 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHH
Confidence 66666666543 3333445555555555555554444444444444333333333
Q ss_pred --HHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 003487 593 --KKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625 (816)
Q Consensus 593 --rqlsslekeR~~lqsti~ALQEEKklLqskLRk 625 (816)
.+.+..+-+|+.|.-.+..++.|++.+-.+++.
T Consensus 897 ~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~ 931 (1174)
T KOG0933|consen 897 CLSEKSDGELERKKLEHEVTKLESEKANARKEVEK 931 (1174)
T ss_pred HHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHH
Confidence 333333444555555555555555555555443
No 61
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.88 E-value=4.5 Score=43.81 Aligned_cols=40 Identities=20% Similarity=0.344 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 003487 467 QHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ 506 (816)
Q Consensus 467 qhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNq 506 (816)
.|++.|-.++-.|...++....+...|-.....|....++
T Consensus 151 ~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~ 190 (312)
T smart00787 151 ENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQ 190 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333333333333333
No 62
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=94.85 E-value=3.1 Score=42.01 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003487 461 DFAALEQHIEDLTQEKFALQRSLEAS 486 (816)
Q Consensus 461 ~faaLqqhIeDLT~EKfaLqR~L~~s 486 (816)
.+..++..|.++-.++-.|++.++..
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~i~~~ 46 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRRIEEI 46 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777665553
No 63
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.81 E-value=15 Score=45.83 Aligned_cols=56 Identities=18% Similarity=0.199 Sum_probs=35.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhhhHHHHHH
Q 003487 704 RMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLT 759 (816)
Q Consensus 704 RmI~NInaLisELa~Ereel~~AL~~es~~~s~Lk~lN~ELsrKLE~qTQRLELlt 759 (816)
.=|..|.+-|..+..+++++=..|..-..+...++..-..+...++...+.|+-+.
T Consensus 607 ~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 662 (1201)
T PF12128_consen 607 ERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLK 662 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34667777777777777777666666666666666655555555555544444333
No 64
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=94.75 E-value=1.8 Score=51.96 Aligned_cols=121 Identities=21% Similarity=0.254 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 003487 464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR 543 (816)
Q Consensus 464 aLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaAr 543 (816)
-+.+-+..++-|-..|-++|+.--.+...|-.+....-..++.....+..+..+.--|+-|+.+..-+|+--..||+--+
T Consensus 96 e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~ 175 (769)
T PF05911_consen 96 ELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSR 175 (769)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33344445555556666666665666666666666666677777777777777888888888888888888889999888
Q ss_pred hhhhhHHHHHHHHHHHHHhHHHHHHHHhhhh----------hhhHHHHhhh
Q 003487 544 LECNAADERAKILASEVIGLEEKALRLRSNE----------LKLERQLENS 584 (816)
Q Consensus 544 le~~aA~ERak~LAaEVV~LEEk~l~LRS~E----------LKlerele~l 584 (816)
..+.+|.-.=.-=..-|.-||+.|.|||.-. -+++.|++.+
T Consensus 176 ~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~ 226 (769)
T PF05911_consen 176 RAAEAASKQHLESVKKIAKLEAECQRLRALVRKKLPGPAALAQMKNEVESL 226 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHh
Confidence 8888887554444455668999999999765 3456666665
No 65
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=94.74 E-value=0.82 Score=53.45 Aligned_cols=68 Identities=12% Similarity=0.238 Sum_probs=38.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhh
Q 003487 500 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 572 (816)
Q Consensus 500 LTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS 572 (816)
+.+++-+....+.-|.++++++++++.....+++.|+.+..- .+....++.+-.++..|+.++..++.
T Consensus 258 l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~-----~d~~~ea~~~l~~~~~l~~ql~~l~~ 325 (726)
T PRK09841 258 IARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDS-----VDLNLEAKAVLEQIVNVDNQLNELTF 325 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455556667777777777777777777777766532 12223333444455555555555543
No 66
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.73 E-value=1.5 Score=53.82 Aligned_cols=147 Identities=20% Similarity=0.296 Sum_probs=106.3
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003487 454 YSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE 533 (816)
Q Consensus 454 ~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le 533 (816)
+-+.+......|+..|+.+-+.=-+--+.+++.....+.|--|.++|.+-----...+.++...++-|..++..+.+.+.
T Consensus 781 ~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~ 860 (1174)
T KOG0933|consen 781 AKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVD 860 (1174)
T ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777777666666666777888888888888888888876666667788889999999999999999999
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHHH---HhHHHHHHHHhhh-h---hhhHHHHhhhHHHHHHHHHHhhhHHH
Q 003487 534 SFRNEYANVRLECNAADERAKILASEV---IGLEEKALRLRSN-E---LKLERQLENSQSEISSYKKKISSLEK 600 (816)
Q Consensus 534 ~l~aErdaArle~~aA~ERak~LAaEV---V~LEEk~l~LRS~-E---LKlerele~l~~E~~s~~rqlsslek 600 (816)
.+..++..++.+.+.-..+-+..--|+ +...++|++..++ + -|++.++..+..+...++++++.+.+
T Consensus 861 ~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~ 934 (1174)
T KOG0933|consen 861 KVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLK 934 (1174)
T ss_pred hHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHH
Confidence 999999999998888887777777666 6667777765543 1 23344444455555555555554433
No 67
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.67 E-value=0.76 Score=51.69 Aligned_cols=104 Identities=16% Similarity=0.306 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHH
Q 003487 510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS 589 (816)
Q Consensus 510 ~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~ 589 (816)
+++.+..+++.++.|+..-.-+...+..||.+++.|.+.+.+-=+ ..+++...+|-+-+|.+.++..+.....
T Consensus 75 qlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~-------~v~~~~~~a~~n~~kAqQ~lar~t~Q~q 147 (499)
T COG4372 75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQERE-------AVRQELAAARQNLAKAQQELARLTKQAQ 147 (499)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777888888877777888888888888888887765322 2355566667777777777766666666
Q ss_pred HHHHHhhhHHHhhhhhHHHHHHHHHHHHHHH
Q 003487 590 SYKKKISSLEKERQDFQSTIEALQEEKKMMQ 620 (816)
Q Consensus 590 s~~rqlsslekeR~~lqsti~ALQEEKklLq 620 (816)
.++..|--|..+|..|.--.+.||-+.|.||
T Consensus 148 ~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 148 DLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666677777666667777776666
No 68
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=94.61 E-value=7.7 Score=42.96 Aligned_cols=75 Identities=15% Similarity=0.232 Sum_probs=35.7
Q ss_pred HHHhHHHHHHHHhhhhhhhHHHHhhh------------HHHHHHHHHH-hhhHHHhhhhhHHHHHHHHHHHHHHHHHHH-
Q 003487 559 EVIGLEEKALRLRSNELKLERQLENS------------QSEISSYKKK-ISSLEKERQDFQSTIEALQEEKKMMQSKLR- 624 (816)
Q Consensus 559 EVV~LEEk~l~LRS~ELKlerele~l------------~~E~~s~~rq-lsslekeR~~lqsti~ALQEEKklLqskLR- 624 (816)
++..|+.++.+++.+--.++.++.++ ..++.++..+ ...+..+...++..++.++++...++.+|.
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~~ 316 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKEDSQK 316 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44555555555555555555555443 2222222222 123344444455555555555555555555
Q ss_pred ---hhcCCCCcc
Q 003487 625 ---KASGSGKSI 633 (816)
Q Consensus 625 ---ka~~~gk~~ 633 (816)
+|+..|.+.
T Consensus 317 ~~I~AP~dG~V~ 328 (457)
T TIGR01000 317 GVIKAPEDGVLH 328 (457)
T ss_pred CEEECCCCeEEE
Confidence 356666553
No 69
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=94.59 E-value=7.5 Score=43.03 Aligned_cols=54 Identities=19% Similarity=0.347 Sum_probs=31.8
Q ss_pred hhhHHHHhhhHHHHHHHHHHhhhHH--------------------HhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Q 003487 575 LKLERQLENSQSEISSYKKKISSLE--------------------KERQDFQSTIEALQEEKKMMQSKLRKASG 628 (816)
Q Consensus 575 LKlerele~l~~E~~s~~rqlssle--------------------keR~~lqsti~ALQEEKklLqskLRka~~ 628 (816)
..++.++..+..++..++.++..+. +.+..+...++.++.+...++.+|.++-.
T Consensus 239 ~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~ 312 (457)
T TIGR01000 239 ATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKE 312 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555431 23335666777777777777777775443
No 70
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.58 E-value=3.1 Score=51.30 Aligned_cols=176 Identities=25% Similarity=0.340 Sum_probs=97.5
Q ss_pred cccccccCCchhhHHHH-------------------HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Q 003487 449 NQHGFYSTKHNEDFAAL-------------------EQHIE--DLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQ 507 (816)
Q Consensus 449 ~~~~F~s~~~~~~faaL-------------------qqhIe--DLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ 507 (816)
+.--|...++-.+||.| ++|++ ||-++--+|++.+....+--+.|-+++++|....+.-
T Consensus 142 NLCqFLpQDkV~EFa~L~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~ 221 (1072)
T KOG0979|consen 142 NLCQFLPQDKVKEFARLSPIELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERV 221 (1072)
T ss_pred chhhhccHHHHHHHHcCChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 35568999999999864 45554 5566666777777777777777777777776655543
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhh-------hhhhhHHH
Q 003487 508 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS-------NELKLERQ 580 (816)
Q Consensus 508 ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS-------~ELKlere 580 (816)
... ...++.+|.|+.- --.+..+....||.+.++...-|.+--|.|-.|+..+|.+.-.|++ ..=.+.++
T Consensus 222 rer-~~~~~~Ie~l~~k--~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~ 298 (1072)
T KOG0979|consen 222 RER-ERKKSKIELLEKK--KKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRE 298 (1072)
T ss_pred HHH-HHHHHHHHHHHHh--ccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHH
Confidence 322 2233344443221 1122333445555555555555555555565665555555555544 11111111
Q ss_pred --------------HhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 003487 581 --------------LENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 627 (816)
Q Consensus 581 --------------le~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRka~ 627 (816)
+....+++.....+++++.+.+-+.|..|..+.+.--.+|..|.+..
T Consensus 299 ~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~ 359 (1072)
T KOG0979|consen 299 LNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETE 359 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 12244555556666666666666666666555555555555555433
No 71
>PF13166 AAA_13: AAA domain
Probab=94.54 E-value=3.5 Score=47.21 Aligned_cols=110 Identities=22% Similarity=0.342 Sum_probs=50.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH-------------HhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHH
Q 003487 504 YNQQRSVVNQLKSEMEKLQEEIKVQLV-------------ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 570 (816)
Q Consensus 504 yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~-------------~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~L 570 (816)
+.+-...+.+++..++.+.+.+..-.. .+..+....+.....+.+..+....+..+.-.|.+++...
T Consensus 324 ~~~~~~~~~~l~~~l~~l~~~L~~K~~~~~~~~~~~~~~~~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~ 403 (712)
T PF13166_consen 324 KEELKSAIEALKEELEELKKALEKKIKNPSSPIELEEINEDIDELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLH 403 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555544443321 1223344445555555566666667777777776666543
Q ss_pred hhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHH
Q 003487 571 RSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE 615 (816)
Q Consensus 571 RS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEE 615 (816)
.-..+ ...++.+..++..+++++..++++...+...+..++.+
T Consensus 404 ~~~~~--~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 446 (712)
T PF13166_consen 404 LIAKL--KEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKE 446 (712)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 22222233333333334444444433444444444333
No 72
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.50 E-value=6.4 Score=47.01 Aligned_cols=51 Identities=22% Similarity=0.405 Sum_probs=30.1
Q ss_pred HHHhhhHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 003487 493 LAAENSSLTDSY-NQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR 543 (816)
Q Consensus 493 LA~ENsaLTd~y-NqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaAr 543 (816)
|..--.-|.+.| -.+..+-.++++.+..|+.+++.|+..+..+..|+...+
T Consensus 541 L~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~ 592 (717)
T PF10168_consen 541 LSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLR 592 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444 334445566667777777777777777777777666543
No 73
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.49 E-value=4.9 Score=41.21 Aligned_cols=27 Identities=33% Similarity=0.373 Sum_probs=15.0
Q ss_pred hhhhhHHHHHHHHHHHHHhHHHHHHHH
Q 003487 544 LECNAADERAKILASEVIGLEEKALRL 570 (816)
Q Consensus 544 le~~aA~ERak~LAaEVV~LEEk~l~L 570 (816)
.++..|.+|+..+...|..||+++..+
T Consensus 127 ~~Le~aEeR~e~~E~ki~eLE~el~~~ 153 (237)
T PF00261_consen 127 QELERAEERAEAAESKIKELEEELKSV 153 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHH
Confidence 344455566666666666666555444
No 74
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=94.46 E-value=0.47 Score=50.83 Aligned_cols=115 Identities=17% Similarity=0.256 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHH
Q 003487 509 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEI 588 (816)
Q Consensus 509 ~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~ 588 (816)
..+.+|+.++++.+.|.+.+..-|..+..+-+- ..+..+..+.-+.|-.|...|++++.+|..++-.+.+|++.+..+.
T Consensus 9 ~l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~-~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~ 87 (314)
T PF04111_consen 9 LLLEQLDKQLEQAEKERDTYQEFLKKLEEESDS-EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEEL 87 (314)
T ss_dssp ----------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999888888631111 1122333334444444444444444444444444444444444444
Q ss_pred HHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 003487 589 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 624 (816)
Q Consensus 589 ~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLR 624 (816)
..++..-...-+++..++..+-.+++|...+..+++
T Consensus 88 ~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~ 123 (314)
T PF04111_consen 88 EELDEEEEEYWREYNELQLELIEFQEERDSLKNQYE 123 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444445555555555565555555444
No 75
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.39 E-value=19 Score=45.07 Aligned_cols=62 Identities=24% Similarity=0.408 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHH-HHHHHHHHhHHHHHHHHh
Q 003487 510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA-KILASEVIGLEEKALRLR 571 (816)
Q Consensus 510 ~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERa-k~LAaEVV~LEEk~l~LR 571 (816)
.+++++.++.+.+.+++.....+..++.++.+.+.++..+.+.. ..+..++-.|+.++.++.
T Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~ 698 (1201)
T PF12128_consen 636 KIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLK 698 (1201)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555556666556666777777777777776665444 345555666666665554
No 76
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.30 E-value=3.8 Score=50.27 Aligned_cols=101 Identities=27% Similarity=0.405 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHh--------------hhhh
Q 003487 510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR--------------SNEL 575 (816)
Q Consensus 510 ~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LR--------------S~EL 575 (816)
.+.-|+-++|.|++-+..-...||-+++|..+-=-..+.+. +-|.-.||.+-.+|| -+..
T Consensus 326 RaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~s------s~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~q 399 (1243)
T KOG0971|consen 326 RAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAAS------SYQFKQLEQQNARLKDALVRLRDLSASEKQDHQ 399 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc------hHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 34456666666666666666777777777766422221111 123334444444443 3456
Q ss_pred hhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHH
Q 003487 576 KLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 616 (816)
Q Consensus 576 Klerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEK 616 (816)
|+.+|+|..+.|+.-++++-+-|..+=..+.++|.-|||.-
T Consensus 400 K~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQV 440 (1243)
T KOG0971|consen 400 KLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQV 440 (1243)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888888888877777777888888877754
No 77
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=94.26 E-value=2.8 Score=50.38 Aligned_cols=152 Identities=22% Similarity=0.273 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 003487 465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSL----TDSYNQ----QRSVVNQLKSEMEKLQEEIKVQLVELESFR 536 (816)
Q Consensus 465 LqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaL----Td~yNq----Q~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~ 536 (816)
|+.-+++|-.|.-.|.+.|+..+.-......+...+ ..+-.+ -+..+.-+++++..++.+.+.....+..+.
T Consensus 1 Lq~ql~~~q~E~e~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~Lq 80 (775)
T PF10174_consen 1 LQAQLERLQRENERLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQ 80 (775)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 445677888888888888888777666665554331 011111 122344445555555555555555555555
Q ss_pred HHHHHHhhhhh-------hHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHH
Q 003487 537 NEYANVRLECN-------AADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTI 609 (816)
Q Consensus 537 aErdaArle~~-------aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti 609 (816)
.|. .++-+.+ .+......+.. +=-.++.+.++ ..|.+.+..|+..+++.+..++-.=..++-++
T Consensus 81 eEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl-------~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l 151 (775)
T PF10174_consen 81 EEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERL-------QAERERLQRELERLRKTLEELQLRIETQQQTL 151 (775)
T ss_pred HHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554 3332222 33333333444 33334444444 34444555555555555555555555667778
Q ss_pred HHHHHHHHHHHHHHHh
Q 003487 610 EALQEEKKMMQSKLRK 625 (816)
Q Consensus 610 ~ALQEEKklLqskLRk 625 (816)
++.+++.+.|+.+|..
T Consensus 152 ~~~~eei~kL~e~L~~ 167 (775)
T PF10174_consen 152 DKADEEIEKLQEMLQS 167 (775)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8888888888888863
No 78
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.12 E-value=0.014 Score=67.46 Aligned_cols=157 Identities=30% Similarity=0.410 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh-----
Q 003487 464 ALEQHIEDLTQEKFALQRSLEASRALSES----LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES----- 534 (816)
Q Consensus 464 aLqqhIeDLT~EKfaLqR~L~~s~~l~Es----LA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~----- 534 (816)
-|++.|.+|.+||-.|+-.+...+.-..+ ..+.+..+..+++.-...+.+|++++++++..+.-+...++.
T Consensus 197 el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei 276 (713)
T PF05622_consen 197 ELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEI 276 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888887666544433222 224455566677777777777777776665433333322222
Q ss_pred -------------------hHHHHHHHhhhhhhHHHHHHHHHHH-----------------HHhHHHHHHHHhhhhhhhH
Q 003487 535 -------------------FRNEYANVRLECNAADERAKILASE-----------------VIGLEEKALRLRSNELKLE 578 (816)
Q Consensus 535 -------------------l~aErdaArle~~aA~ERak~LAaE-----------------VV~LEEk~l~LRS~ELKle 578 (816)
++-|+|..|-.+ +|+..|.++ |-.||++...+.-..+.||
T Consensus 277 ~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a----~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LE 352 (713)
T PF05622_consen 277 DELRQENEELQAEAREARALRDELDELREKA----DRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLE 352 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333333222 234444443 3344444443333445556
Q ss_pred HHHhh---hHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 003487 579 RQLEN---SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 624 (816)
Q Consensus 579 rele~---l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLR 624 (816)
.++.. ++..+..|++++..++.++.+...-++.|+.|.+.|+.++.
T Consensus 353 eel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~ 401 (713)
T PF05622_consen 353 EELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLE 401 (713)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555 56677778888877777777766666666666666655554
No 79
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.05 E-value=2 Score=47.03 Aligned_cols=91 Identities=16% Similarity=0.222 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHH
Q 003487 475 EKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK 554 (816)
Q Consensus 475 EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak 554 (816)
++-.|..-|..+++-+..|..|...|..++++-.+-+.-|+..+.+++-... ......+..||.+.......+.++..
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~--~~~~~~~~~ere~lV~qLEk~~~q~~ 143 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDE--GIGARHFPHEREDLVEQLEKLREQIE 143 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhc--cccccccchHHHHHHHHHHHHHHHHH
Confidence 5556666777777777777888877777776655555555555544443321 12222334677777777777777777
Q ss_pred HHHHHHHhHHHHH
Q 003487 555 ILASEVIGLEEKA 567 (816)
Q Consensus 555 ~LAaEVV~LEEk~ 567 (816)
.|.-++..+-+..
T Consensus 144 qLe~d~qs~lDEk 156 (319)
T PF09789_consen 144 QLERDLQSLLDEK 156 (319)
T ss_pred HHHHHHHHHHHHH
Confidence 7776666655543
No 80
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=93.92 E-value=9.9 Score=42.02 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=22.6
Q ss_pred hhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHH
Q 003487 532 LESFRNEYANVRLECNAADERAKILASEVIGLEEKAL 568 (816)
Q Consensus 532 le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l 568 (816)
+..+..|+...+..+++-.-..+.+-.++-.|+.++.
T Consensus 256 l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~ 292 (498)
T TIGR03007 256 IEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKE 292 (498)
T ss_pred HHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666666666666666653
No 81
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=93.87 E-value=2.6 Score=43.03 Aligned_cols=93 Identities=26% Similarity=0.307 Sum_probs=67.3
Q ss_pred HHhhhHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHh
Q 003487 494 AAENSSLTDSYNQQ--RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 571 (816)
Q Consensus 494 A~ENsaLTd~yNqQ--~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LR 571 (816)
--+|=+|+.+|-.. ..-..+|...+++|+.+++.+.-.++.+-.+|-..|+++ +.++-.||.+-..+-
T Consensus 119 R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~----------~~~L~~Le~~W~~~v 188 (221)
T PF05700_consen 119 RLENLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEA----------GEELRYLEQRWKELV 188 (221)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHH
Confidence 34566677777433 345578889999999999999999999999999887764 345556777777666
Q ss_pred hhhhhhHHHHhhhHHHHHHHHHHhh
Q 003487 572 SNELKLERQLENSQSEISSYKKKIS 596 (816)
Q Consensus 572 S~ELKlerele~l~~E~~s~~rqls 596 (816)
+.-+.++....+|..||.+.+++..
T Consensus 189 ~kn~eie~a~~~Le~ei~~l~~~~~ 213 (221)
T PF05700_consen 189 SKNLEIEVACEELEQEIEQLKRKAA 213 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666655
No 82
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=93.83 E-value=9.8 Score=43.30 Aligned_cols=35 Identities=37% Similarity=0.403 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Q 003487 462 FAALEQHIEDLTQEKFALQRSL-EASRALSESLAAE 496 (816)
Q Consensus 462 faaLqqhIeDLT~EKfaLqR~L-~~s~~l~EsLA~E 496 (816)
...+++-|+|+...+-.|+-.. ++.+.|++.|+.-
T Consensus 89 l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~ 124 (420)
T COG4942 89 LKKLRKQIADLNARLNALEVQEREQRRRLAEQLAAL 124 (420)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555554444444433 5555566666553
No 83
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=93.78 E-value=5.5 Score=40.22 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=7.5
Q ss_pred ccccccccccchh
Q 003487 688 RLALEGLAVNIPH 700 (816)
Q Consensus 688 ~~~l~g~~vsIp~ 700 (816)
++.+.|+...|+.
T Consensus 222 ~i~~~gs~s~i~d 234 (302)
T PF10186_consen 222 PITPSGSRSTIID 234 (302)
T ss_pred CcccCccccchhh
Confidence 3555666666555
No 84
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.72 E-value=8 Score=48.58 Aligned_cols=153 Identities=22% Similarity=0.298 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHH-----------HHHHHHHHHHHHHHHHHH
Q 003487 462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVN-----------QLKSEMEKLQEEIKVQLV 530 (816)
Q Consensus 462 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~-----------qLk~dmEqLq~Ei~aQ~~ 530 (816)
..-|+.-||..-.+|+.+.-+++.++..-+.+-.|++.|...-+.-...+. .++.+++.++.++.--+.
T Consensus 414 ~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~ 493 (1293)
T KOG0996|consen 414 IKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLK 493 (1293)
T ss_pred HHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 445666777778888888888888888777777777777666555443333 233444445555444444
Q ss_pred HhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhh-------hhhhhHHHHhhhHHHHHHHHHHhhhHHHhhh
Q 003487 531 ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS-------NELKLERQLENSQSEISSYKKKISSLEKERQ 603 (816)
Q Consensus 531 ~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS-------~ELKlerele~l~~E~~s~~rqlsslekeR~ 603 (816)
.+-..++|.+-|+.+...-..|.-.+-.-|..|..+++..+- ...+++.++..++.|+....+.+..+-++-+
T Consensus 494 ~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~ 573 (1293)
T KOG0996|consen 494 QVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEER 573 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHH
Confidence 555556666666666666556665566666666666665321 1223444555556666666666666666666
Q ss_pred hhHHHHHHHHH
Q 003487 604 DFQSTIEALQE 614 (816)
Q Consensus 604 ~lqsti~ALQE 614 (816)
.|.+.++++..
T Consensus 574 ~~~~~~~~~rq 584 (1293)
T KOG0996|consen 574 NLKSQLNKLRQ 584 (1293)
T ss_pred HHHHHHHHHHH
Confidence 66666666653
No 85
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.68 E-value=12 Score=44.06 Aligned_cols=58 Identities=22% Similarity=0.172 Sum_probs=45.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHH-------HHHHhhhHHHHHHHHHh
Q 003487 706 IHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSR-------KLEHQTQRLELLTAQNM 763 (816)
Q Consensus 706 I~NInaLisELa~Ereel~~AL~~es~~~s~Lk~lN~ELsr-------KLE~qTQRLELltsq~m 763 (816)
++|.+++|.|+-.....+---|....+.|-..+..+-|+.. +||-+.+.|.|..=+.|
T Consensus 448 ~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m 512 (581)
T KOG0995|consen 448 FSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSM 512 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888888888888888889888888888765 47777777766655555
No 86
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=93.67 E-value=0.53 Score=41.11 Aligned_cols=63 Identities=17% Similarity=0.213 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHH
Q 003487 507 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALR 569 (816)
Q Consensus 507 Q~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~ 569 (816)
....+..|+..+.++.+.+.++..++..+..|||.|......|-+....|-+||-.|..+.-.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999999999999999999999999999999888888888777766443
No 87
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.64 E-value=5.1 Score=50.33 Aligned_cols=127 Identities=20% Similarity=0.265 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 003487 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 539 (816)
Q Consensus 460 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aEr 539 (816)
+=|.-.--.|.+|+ ....|-+.++++|- |++++++..++...+++.|+.-+..|.
T Consensus 1164 ~CF~~WD~il~~L~---~rt~rl~~~A~~l~----------------~tGv~gay~s~f~~me~kl~~ir~il~------ 1218 (1758)
T KOG0994|consen 1164 ECFQTWDAILQELA---LRTHRLINRAKELK----------------QTGVLGAYASRFLDMEEKLEEIRAILS------ 1218 (1758)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHhh----------------hccCchhhHhHHHHHHHHHHHHHHHhc------
Confidence 34555445555554 34566677777664 556666666666555554332222221
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHH
Q 003487 540 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 616 (816)
Q Consensus 540 daArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEK 616 (816)
..+-+-|-...|+.+.-.|+.++..++-.--..|..|..+..++....+.|++|++|+..|..+...|.|.-
T Consensus 1219 -----~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~ 1290 (1758)
T KOG0994|consen 1219 -----APSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQL 1290 (1758)
T ss_pred -----CCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122223334445555555554444333334666667777777778889999999888888887777654
No 88
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=93.62 E-value=7.1 Score=39.02 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003487 463 AALEQHIEDLTQEKFALQRSLEASRALSESLA 494 (816)
Q Consensus 463 aaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA 494 (816)
..|+|+|.||-..=-.+.+++.+.......|.
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le 57 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLE 57 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999998887777777776666555544
No 89
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=93.57 E-value=0.02 Score=66.18 Aligned_cols=76 Identities=25% Similarity=0.385 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHH---HhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHH
Q 003487 546 CNAADERAKILASEVIGLEEKALR---LRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS 621 (816)
Q Consensus 546 ~~aA~ERak~LAaEVV~LEEk~l~---LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqs 621 (816)
...-.|+-..|---.+.||+.+.+ +|+..-.+++++..+..++....+++..++.|...|+..+++|++||..|..
T Consensus 334 vk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~ 412 (713)
T PF05622_consen 334 VKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQE 412 (713)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445555555443 3333333344555555554444555555555555566666666666655543
No 90
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.55 E-value=9.7 Score=38.80 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=26.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 003487 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTD 502 (816)
Q Consensus 459 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd 502 (816)
..-|.-+..---|.|..=+.|.+.|-...+-+..-...|..++.
T Consensus 8 e~af~~iK~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ 51 (201)
T PF13851_consen 8 EKAFQEIKNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMA 51 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666777777666666665555555555554443
No 91
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.32 E-value=5.2 Score=43.80 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=17.1
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003487 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASR 487 (816)
Q Consensus 457 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~ 487 (816)
.....+.+||+-|.+|-+|-..|--...+-.
T Consensus 157 ~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~ 187 (306)
T PF04849_consen 157 QKCIQLEALQEKLKSLEEENEQLRSEASQLK 187 (306)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344566666666666666655544433333
No 92
>PF13514 AAA_27: AAA domain
Probab=93.31 E-value=12 Score=46.22 Aligned_cols=48 Identities=19% Similarity=0.451 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q 003487 586 SEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSI 633 (816)
Q Consensus 586 ~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRka~~~gk~~ 633 (816)
..|..+++....+++.+..++.-++.+.++-..+..+++.+...|.++
T Consensus 452 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 499 (1111)
T PF13514_consen 452 ETVEAFRAEFEELERQLRRARDRLEELEEELARLEARLRRLAAAGDVP 499 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 467788888888888888888888888888899999999888877764
No 93
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.30 E-value=11 Score=47.55 Aligned_cols=62 Identities=15% Similarity=0.213 Sum_probs=45.7
Q ss_pred HhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHH
Q 003487 495 AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 556 (816)
Q Consensus 495 ~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~L 556 (816)
.|-.+.-...+.-+.++.+|...||.|+.++..+-.+-+.+..+.+.|+.++..|..-.+.|
T Consensus 1605 ~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~l 1666 (1758)
T KOG0994|consen 1605 EETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEIL 1666 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445566777788999999999999888777777777777788887777776665533
No 94
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=93.27 E-value=3.8 Score=39.84 Aligned_cols=33 Identities=24% Similarity=0.439 Sum_probs=14.6
Q ss_pred HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003487 491 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE 523 (816)
Q Consensus 491 EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~ 523 (816)
..|..|-+.+-++.+.....+..++++...++.
T Consensus 91 ~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~ 123 (191)
T PF04156_consen 91 QQLQEELDQLQERIQELESELEKLKEDLQELRE 123 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 333344444444444444444444444444443
No 95
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.23 E-value=2.2 Score=46.65 Aligned_cols=87 Identities=17% Similarity=0.275 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh-------------------HHHHHHHHHHHHH
Q 003487 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQR-------------------SVVNQLKSEMEKL 521 (816)
Q Consensus 461 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~-------------------~~v~qLk~dmEqL 521 (816)
++..|.+.+.|..++.-.|...+..-+.--..+-.++-.|-.+.+.+. ..+..++...++|
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qL 145 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQL 145 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 666677777777777777776666666665666666666666555543 2457788999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhhhhh
Q 003487 522 QEEIKVQLVELESFRNEYANVRLECN 547 (816)
Q Consensus 522 q~Ei~aQ~~~le~l~aErdaArle~~ 547 (816)
+.++++..-+.+-+..|||+.+--|.
T Consensus 146 e~d~qs~lDEkeEl~~ERD~yk~K~~ 171 (319)
T PF09789_consen 146 ERDLQSLLDEKEELVTERDAYKCKAH 171 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999876543
No 96
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=93.23 E-value=10 Score=38.51 Aligned_cols=134 Identities=20% Similarity=0.266 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH------------hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 003487 479 LQRSLEASRALSESLAAENSSLTDSYNQ------------QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC 546 (816)
Q Consensus 479 LqR~L~~s~~l~EsLA~ENsaLTd~yNq------------Q~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~ 546 (816)
|.+++..-..-++.+|..+..+...... +......+...+++++...+.+...|+..+..|.++-.+.
T Consensus 58 l~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~ 137 (236)
T cd07651 58 LKNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADCSKI 137 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4444444444445555555544444432 2333445566677778888888888888888888877766
Q ss_pred hhHHHHHHH-HHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHH--HHHHH
Q 003487 547 NAADERAKI-LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ--EEKKM 618 (816)
Q Consensus 547 ~aA~ERak~-LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQ--EEKkl 618 (816)
..+...... ...|+--++.|+.+...+--+.+++.+....+...++..-. .++-.+.+.|| ||.+.
T Consensus 138 e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~------~~~~~~~~~~Q~lEe~Ri 206 (236)
T cd07651 138 NSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWN------REWKAALDDFQDLEEERI 206 (236)
T ss_pred HHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 665554322 23566667777776666666666666665555555544332 45677888888 55543
No 97
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=93.22 E-value=13 Score=41.94 Aligned_cols=66 Identities=20% Similarity=0.254 Sum_probs=48.4
Q ss_pred HHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 003487 476 KFALQRSLE-ASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 541 (816)
Q Consensus 476 KfaLqR~L~-~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErda 541 (816)
-.+|+-+++ +.+++.-.|.++-++-.+..-+-.+++.-|..+.|||+++|.-.......+..+.|.
T Consensus 105 ~~s~LaAaE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~K 171 (561)
T KOG1103|consen 105 AASLLAAAEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDK 171 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443 578899999999988877776667788899999999999988776666555444443
No 98
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.17 E-value=7.6 Score=47.86 Aligned_cols=124 Identities=19% Similarity=0.294 Sum_probs=80.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh-----------HHHHHHHHHHHHHhHHHH------
Q 003487 504 YNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNA-----------ADERAKILASEVIGLEEK------ 566 (816)
Q Consensus 504 yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~a-----------A~ERak~LAaEVV~LEEk------ 566 (816)
.-.-...+++|++.-|+|.+++..-.+.++.|++-.|||- .+.+ -.||.|.|--||-.||+-
T Consensus 405 lE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAl-GAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQ 483 (1243)
T KOG0971|consen 405 LEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAAL-GAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQ 483 (1243)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334567778888888888888888888888888888862 2221 124555555555555431
Q ss_pred -HHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Q 003487 567 -ALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 628 (816)
Q Consensus 567 -~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRka~~ 628 (816)
+---|--|+-|++|++-++--+.-+.+++.++.+---+..-||-..+|=-..||..|+....
T Consensus 484 L~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~d 546 (1243)
T KOG0971|consen 484 LQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTD 546 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 01113345666777776666666677777777666666666777777888899999985443
No 99
>PRK11281 hypothetical protein; Provisional
Probab=93.01 E-value=2.8 Score=52.18 Aligned_cols=14 Identities=21% Similarity=0.162 Sum_probs=6.9
Q ss_pred HHHHHHHhHHHHHH
Q 003487 555 ILASEVIGLEEKAL 568 (816)
Q Consensus 555 ~LAaEVV~LEEk~l 568 (816)
.|-+|...|+.+..
T Consensus 196 ~l~ae~~~l~~~~~ 209 (1113)
T PRK11281 196 LLQAEQALLNAQND 209 (1113)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555533
No 100
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=92.95 E-value=13 Score=45.07 Aligned_cols=164 Identities=20% Similarity=0.260 Sum_probs=100.4
Q ss_pred cccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-------HhhHHHHHHHHHHHHHHHHH
Q 003487 453 FYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYN-------QQRSVVNQLKSEMEKLQEEI 525 (816)
Q Consensus 453 F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yN-------qQ~~~v~qLk~dmEqLq~Ei 525 (816)
|....++..-.+||..|+.=-..=-+|.|.|.....=.+.|-......+..-+ .-......+|.+|+++.-++
T Consensus 217 ~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL 296 (775)
T PF10174_consen 217 LQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLEL 296 (775)
T ss_pred hhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33445555566888888887777777888877755444444332222222111 12233344555566666665
Q ss_pred HHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhh
Q 003487 526 KVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDF 605 (816)
Q Consensus 526 ~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~l 605 (816)
.---.++.++.++...+--...+..++--.|=-++-..|.++-.|.++.=.|+-+|+.....+....+++..++.|+..+
T Consensus 297 ~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~ 376 (775)
T PF10174_consen 297 SRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRL 376 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555554444555556666666666677777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHH
Q 003487 606 QSTIEALQEEK 616 (816)
Q Consensus 606 qsti~ALQEEK 616 (816)
...|+-|.+.-
T Consensus 377 ~~Ei~~l~d~~ 387 (775)
T PF10174_consen 377 QGEIEDLRDML 387 (775)
T ss_pred HHHHHHHHHHH
Confidence 66666665544
No 101
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=92.78 E-value=12 Score=48.86 Aligned_cols=161 Identities=25% Similarity=0.360 Sum_probs=108.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHhhhH-------HHHHHHH
Q 003487 461 DFAALEQHIEDLTQEKFALQRSLEASRALS---------------------------ESLAAENSS-------LTDSYNQ 506 (816)
Q Consensus 461 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~---------------------------EsLA~ENsa-------LTd~yNq 506 (816)
|-++|.|-++-+.++--.|+|.|-+.++-. -.|-.||.+ |.+.+|.
T Consensus 1175 e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k~qEl~~~i~k 1254 (1822)
T KOG4674|consen 1175 ENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLEKIQELRDKIEK 1254 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888887777777888777666544 123344444 4445555
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHH--------HHHHHHHHHhHHHHHHHHhhhhhhhH
Q 003487 507 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADER--------AKILASEVIGLEEKALRLRSNELKLE 578 (816)
Q Consensus 507 Q~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ER--------ak~LAaEVV~LEEk~l~LRS~ELKle 578 (816)
..-.+.-|+..+.+|..+|..-.+++.-++.|-+.-+++.++--+- -+.|.+|+-.|++++-. .+
T Consensus 1255 l~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~-------ke 1327 (1822)
T KOG4674|consen 1255 LNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEE-------KE 1327 (1822)
T ss_pred HHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH-------HH
Confidence 5555555666666666677777778888888888888888877665 56778888888877662 25
Q ss_pred HHHhhhHHHHHHHH----HHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Q 003487 579 RQLENSQSEISSYK----KKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 628 (816)
Q Consensus 579 rele~l~~E~~s~~----rqlsslekeR~~lqsti~ALQEEKklLqskLRka~~ 628 (816)
+.++.+..++.+++ .++-.+..+++.+...|+.+-.=+..|-..+....+
T Consensus 1328 ~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~ 1381 (1822)
T KOG4674|consen 1328 NLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNA 1381 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666665555 777777778888777777776666666666664443
No 102
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=92.76 E-value=13 Score=42.76 Aligned_cols=141 Identities=16% Similarity=0.303 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHH
Q 003487 479 LQRSLEASRALSESLAAENSSLTDSYNQ---QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 555 (816)
Q Consensus 479 LqR~L~~s~~l~EsLA~ENsaLTd~yNq---Q~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~ 555 (816)
+..-|...++.+..|..|-+.|..+|-= -...+.++..+++.++..+..-...++.-..=|-..+-...+..++-..
T Consensus 311 l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ 390 (560)
T PF06160_consen 311 LYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEE 390 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHH
Confidence 4445555566666666666666666521 2233444555555555544444444444444455555666677777788
Q ss_pred HHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhh-------HHHHHHHHHHHHHHHHHHH
Q 003487 556 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDF-------QSTIEALQEEKKMMQSKLR 624 (816)
Q Consensus 556 LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~l-------qsti~ALQEEKklLqskLR 624 (816)
+..+...+-+.+..||.+|.+.+..|..++.++..++|+++ |.+| ...+....++-..|...|.
T Consensus 391 ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le-----k~nLPGlp~~y~~~~~~~~~~i~~l~~~L~ 461 (560)
T PF06160_consen 391 IEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE-----KSNLPGLPEDYLDYFFDVSDEIEELSDELN 461 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HcCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888899999999999999999888888888887 4444 2344444455555555554
No 103
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=92.72 E-value=12 Score=48.86 Aligned_cols=155 Identities=24% Similarity=0.330 Sum_probs=89.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-----
Q 003487 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF----- 535 (816)
Q Consensus 461 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l----- 535 (816)
+|.-|--|.+.++.++--|.+.+.+=....+.|-++|+.+-..==+---.+..++.++|.|+.++.-....+...
T Consensus 81 e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~ 160 (1822)
T KOG4674|consen 81 ELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKTLS 160 (1822)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666677777777777766667777766666652111111122222334444444443333333322
Q ss_pred ----------------HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhh----hhhhHHHHhhhHHHHHHHHHHh
Q 003487 536 ----------------RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSN----ELKLERQLENSQSEISSYKKKI 595 (816)
Q Consensus 536 ----------------~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~----ELKlerele~l~~E~~s~~rql 595 (816)
..++.+--++...--.-+.-|..|.-.--++.+.+|-. .+.|+..|.++..+...|..++
T Consensus 161 e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~ 240 (1822)
T KOG4674|consen 161 ELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKN 240 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233333333333333445556666666777777777 7778888888888888888888
Q ss_pred hhHHHhhhhhHHHHHHHHHH
Q 003487 596 SSLEKERQDFQSTIEALQEE 615 (816)
Q Consensus 596 sslekeR~~lqsti~ALQEE 615 (816)
..+...+.+|...|.-+..+
T Consensus 241 ~~l~q~~~eLs~~ie~~~~~ 260 (1822)
T KOG4674|consen 241 KSLKQQNEELSKKIESLNLE 260 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888766665543
No 104
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=92.67 E-value=5.7 Score=43.83 Aligned_cols=34 Identities=18% Similarity=0.124 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003487 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLA 494 (816)
Q Consensus 461 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA 494 (816)
....+.+.|.++.++...++..+...++..+.|-
T Consensus 198 ~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~ 231 (498)
T TIGR03007 198 QEGDYYSEISEAQEELEAARLELNEAIAQRDALK 231 (498)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777766666665555443
No 105
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=92.66 E-value=14 Score=43.52 Aligned_cols=91 Identities=27% Similarity=0.274 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHH--hhhh
Q 003487 470 EDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR-NEYANV--RLEC 546 (816)
Q Consensus 470 eDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~-aErdaA--rle~ 546 (816)
++-.+|--+|+..|+.-..-.+.+.++-..++..+-+....+.+.+...++|+++++...-..+-+. +|..-+ +.-|
T Consensus 324 ~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v 403 (594)
T PF05667_consen 324 EEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALV 403 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3334455556666666666777777777777777777777777777778888777766655444442 122222 3334
Q ss_pred hhHHHHHHHHHHHH
Q 003487 547 NAADERAKILASEV 560 (816)
Q Consensus 547 ~aA~ERak~LAaEV 560 (816)
.+..+|-..|+.+-
T Consensus 404 ~~s~~rl~~L~~qW 417 (594)
T PF05667_consen 404 EASEQRLVELAQQW 417 (594)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555655555543
No 106
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=92.63 E-value=30 Score=42.00 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhhhHHHHHHHHHhhhhccccCCCC
Q 003487 714 SELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENISFRQPD 774 (816)
Q Consensus 714 sELa~Ereel~~AL~~es~~~s~Lk~lN~ELsrKLE~qTQRLELltsq~ma~e~~~a~~~d 774 (816)
.-|+.=|..|..+=...-++-..|+.+|-+|.|||++...|-|-++.+-=+.--++.|+|.
T Consensus 587 qqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE 647 (961)
T KOG4673|consen 587 QQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIE 647 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHH
Confidence 3333334444444444455667899999999999999999999888775544444555553
No 107
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=92.56 E-value=8.1 Score=42.33 Aligned_cols=63 Identities=21% Similarity=0.385 Sum_probs=51.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003487 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ 528 (816)
Q Consensus 459 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ 528 (816)
-.|+.|+-.++++ -.|.|+=+-+|-+.|-..|..|+.++..-...++...+.|.+|+-|+..-
T Consensus 61 y~Didavt~lLeE-------kerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~k 123 (306)
T PF04849_consen 61 YNDIDAVTRLLEE-------KERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMK 123 (306)
T ss_pred hhhHHHHHHHHHH-------HhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666665 46889999999999999999999999888888888888888888886543
No 108
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=92.55 E-value=6.9 Score=48.56 Aligned_cols=131 Identities=30% Similarity=0.340 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHhhhHH-------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHH
Q 003487 483 LEASRALSESLAAENSSL-------TDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 555 (816)
Q Consensus 483 L~~s~~l~EsLA~ENsaL-------Td~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~ 555 (816)
+....+..+.|..|-+++ ++.|+-|-..-..|+.+.++|+..++-...+++.+..|+.-++... .
T Consensus 443 ~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l--------~ 514 (1041)
T KOG0243|consen 443 KKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATL--------K 514 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H
Confidence 333444455555555554 4445444455559999999999999999999999999998865443 3
Q ss_pred HHHHHHh----HHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 003487 556 LASEVIG----LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 624 (816)
Q Consensus 556 LAaEVV~----LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLR 624 (816)
+.-+||. +|+++.+. ..++++.+++...+++.+-+++....+.=++=+..+.-++.+-..+-.-|-
T Consensus 515 ~~e~ii~~~~~se~~l~~~---a~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n~~~~~~~~~~l~~~~~~~~ 584 (1041)
T KOG0243|consen 515 EEEEIISQQEKSEEKLVDR---ATKLRRSLEESQDDLSSLFEKLDRKDRLDDDNQEVIDDFQSQLSENLSTLH 584 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHhhhhhHHHHHHH
Confidence 3344443 44444433 778899999999999999999998888777777777777766544433333
No 109
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=92.53 E-value=5.2 Score=46.66 Aligned_cols=61 Identities=20% Similarity=0.272 Sum_probs=49.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHH-----hhhHHHHHHHHHhhh
Q 003487 705 MIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEH-----QTQRLELLTAQNMAN 765 (816)
Q Consensus 705 mI~NInaLisELa~Ereel~~AL~~es~~~s~Lk~lN~ELsrKLE~-----qTQRLELltsq~ma~ 765 (816)
+..-|.+|=.+|++++..--++|......+.+|++.=..|+-.|+. ++=+.|+..=+.|..
T Consensus 322 L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YRkLLe 387 (546)
T KOG0977|consen 322 LEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAYRKLLE 387 (546)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHHHHHhc
Confidence 4455677777888899999999999999999999888888777664 556789999999876
No 110
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=92.49 E-value=19 Score=39.31 Aligned_cols=25 Identities=16% Similarity=0.429 Sum_probs=17.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHH
Q 003487 600 KERQDFQSTIEALQEEKKMMQSKLR 624 (816)
Q Consensus 600 keR~~lqsti~ALQEEKklLqskLR 624 (816)
-||+.|.-.+..|.+|-+-|..-|.
T Consensus 157 dEke~llesvqRLkdEardlrqela 181 (333)
T KOG1853|consen 157 DEKEVLLESVQRLKDEARDLRQELA 181 (333)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677788888888777665544
No 111
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=92.44 E-value=3.2 Score=43.82 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHH----hhcCCCCcc
Q 003487 609 IEALQEEKKMMQSKLR----KASGSGKSI 633 (816)
Q Consensus 609 i~ALQEEKklLqskLR----ka~~~gk~~ 633 (816)
+.+++.+....+..|. +++-.|...
T Consensus 192 ~~~~~a~l~~a~~~l~~~~I~AP~dG~V~ 220 (346)
T PRK10476 192 RAAREAALAIAELHLEDTTVRAPFDGRVV 220 (346)
T ss_pred HHHHHHHHHHHHHHhhcCEEECCCCcEEE
Confidence 3344444343444443 356666653
No 112
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.41 E-value=12 Score=44.17 Aligned_cols=153 Identities=17% Similarity=0.232 Sum_probs=85.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---hhhh
Q 003487 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE---LESF 535 (816)
Q Consensus 459 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~---le~l 535 (816)
.....-|++-|+-||+|=-.--+.-.++-.--=.|-.|-+.|-.+|-+.-.....++.+|+++++-+.....- ...-
T Consensus 7 eq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~ 86 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARD 86 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4456678888888888877666666666666667777888888877777777777777777777654333221 1111
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHH
Q 003487 536 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 613 (816)
Q Consensus 536 ~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQ 613 (816)
-.||.-+-+.--+|.|- .+---|..||..+-++|-.--.-+.|.+.+-...+.+..--..++.+|..|.+.|..+.
T Consensus 87 g~e~EesLLqESaakE~--~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~K 162 (772)
T KOG0999|consen 87 GEEREESLLQESAAKEE--YYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYK 162 (772)
T ss_pred chhhHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHH
Confidence 22333333332333322 22233455555555554333333333334444444444444456667777666665544
No 113
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=92.40 E-value=9.2 Score=46.76 Aligned_cols=139 Identities=19% Similarity=0.229 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----------HHHHhhHHHHHH----HHHHHHHHHHHHHH--
Q 003487 465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTD----------SYNQQRSVVNQL----KSEMEKLQEEIKVQ-- 528 (816)
Q Consensus 465 LqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd----------~yNqQ~~~v~qL----k~dmEqLq~Ei~aQ-- 528 (816)
|+-...+||.+|..++-+|--|+.-+|.+-+--..|-. +.-+-.--+..+ ...++.++++|.-|
T Consensus 321 lh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn 400 (1265)
T KOG0976|consen 321 LHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKN 400 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455678999999999999999888877654433321 122222223333 33333344433332
Q ss_pred -HHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhh----hhhhhHHHHhhhHHHHHHHHHHhhhHHHhhh
Q 003487 529 -LVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS----NELKLERQLENSQSEISSYKKKISSLEKERQ 603 (816)
Q Consensus 529 -~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS----~ELKlerele~l~~E~~s~~rqlsslekeR~ 603 (816)
..-++..+-.-.+|.-+...|-||+-.|-.+.+-++-+|-.+++ .+.+.++-++.-..=|.+.+...-+++|.|.
T Consensus 401 ~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle~qrK 480 (1265)
T KOG0976|consen 401 HIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLEKQRK 480 (1265)
T ss_pred hhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChhhhcc
Confidence 23345557777899999999999999999999999999887753 5677778777766667777777777776663
No 114
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.31 E-value=8.3 Score=44.23 Aligned_cols=115 Identities=24% Similarity=0.256 Sum_probs=71.4
Q ss_pred HHHhhhHHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHH
Q 003487 493 LAAENSSLTDSYNQQRSV-------VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE 565 (816)
Q Consensus 493 LA~ENsaLTd~yNqQ~~~-------v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEE 565 (816)
|-.||=.|.-|||..--+ ..+-=.+-++.++||-+-....+++..|- -.-|-+.|+-|+-.|-.
T Consensus 248 lkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~En---------lqmr~qqleeentelRs 318 (502)
T KOG0982|consen 248 LKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLEKEN---------LQMRDQQLEEENTELRS 318 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Confidence 444666666666653332 22223333444444444333333333332 23366778888888888
Q ss_pred HHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHH
Q 003487 566 KALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 616 (816)
Q Consensus 566 k~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEK 616 (816)
-+-+||+..=|+..+.....+.++.++-|+.-..+.|-.+-..+-..|+||
T Consensus 319 ~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ek 369 (502)
T KOG0982|consen 319 LIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEK 369 (502)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888888888888777777888877777777777766666666666666
No 115
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=92.25 E-value=11 Score=38.60 Aligned_cols=155 Identities=19% Similarity=0.235 Sum_probs=92.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-HhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003487 459 NEDFAALEQHIEDLTQEKFALQRSLEASRAL----SESLA-AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE 533 (816)
Q Consensus 459 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l----~EsLA-~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le 533 (816)
..+-+.|++.|++...+--.+++.|++-..- .+.++ .--+.|..+.++.-..+.+++.++-.+..++..+....+
T Consensus 37 ~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~ 116 (240)
T PF12795_consen 37 KKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPE 116 (240)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHH
Confidence 3455677888888888888888877766432 11111 012456777777777788888888888888777777777
Q ss_pred hhHHHHHHHhhhhhhHHHHHHH----------------HHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhh
Q 003487 534 SFRNEYANVRLECNAADERAKI----------------LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISS 597 (816)
Q Consensus 534 ~l~aErdaArle~~aA~ERak~----------------LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlss 597 (816)
.+......++....++..+-.. |-+|+..|+.++..++-.-+-.-.-.+=++..+.-+.+++.-
T Consensus 117 ~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~ 196 (240)
T PF12795_consen 117 RAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQR 196 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777766666655433 344444444444433222111111111133444455666666
Q ss_pred HHHhhhhhHHHHHHHH
Q 003487 598 LEKERQDFQSTIEALQ 613 (816)
Q Consensus 598 lekeR~~lqsti~ALQ 613 (816)
++...+.|+..|+...
T Consensus 197 l~~~l~~Lq~~ln~~R 212 (240)
T PF12795_consen 197 LQQQLQALQNLLNQKR 212 (240)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6667777777776655
No 116
>PF13514 AAA_27: AAA domain
Probab=92.09 E-value=15 Score=45.40 Aligned_cols=33 Identities=30% Similarity=0.452 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 003487 509 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 541 (816)
Q Consensus 509 ~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErda 541 (816)
..+..++.+++.+++++......++.+..+++.
T Consensus 801 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~ 833 (1111)
T PF13514_consen 801 EERERLQEQLEELEEELEQAEEELEELEAELAE 833 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555544
No 117
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.05 E-value=19 Score=43.27 Aligned_cols=113 Identities=24% Similarity=0.307 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhh----------hHHHH
Q 003487 512 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK----------LERQL 581 (816)
Q Consensus 512 ~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELK----------lerel 581 (816)
.++.+-+-.++.++..|-.++..+..+.++..-++..-..+.+..+.+|+.++++...+ +.+.- +-.|+
T Consensus 161 ~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~-~~~~qq~a~~~~ql~~~~el 239 (716)
T KOG4593|consen 161 NKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEER-ADHEQQNAELEQQLSLSEEL 239 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHhhhHH
Confidence 34444455566677777777777777777777777777777777777777766665532 22211 11122
Q ss_pred hhh-------HHHHHHHHHHhhhHHHhhh---hhHHHHHHHHHHHHHHHHHHHh
Q 003487 582 ENS-------QSEISSYKKKISSLEKERQ---DFQSTIEALQEEKKMMQSKLRK 625 (816)
Q Consensus 582 e~l-------~~E~~s~~rqlsslekeR~---~lqsti~ALQEEKklLqskLRk 625 (816)
+.+ ..|....+++++...-+-. +.+.++.-||||.+.||++|+.
T Consensus 240 e~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~ 293 (716)
T KOG4593|consen 240 EAINKNMKDQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGR 293 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 221 1222333333333322222 3455788899999999999985
No 118
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=92.04 E-value=16 Score=37.46 Aligned_cols=130 Identities=15% Similarity=0.184 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHH-----------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 003487 478 ALQRSLEASRALSESLAAENSSLTDSYNQQRSVV-----------NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC 546 (816)
Q Consensus 478 aLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v-----------~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~ 546 (816)
.|..++..-..-++.+|.-+..|.++.+.....+ ..+...|+.++...+.+...|.-.+.-|.++-.+.
T Consensus 57 sl~~aw~~i~~e~e~~a~~H~~la~~L~~~v~~l~~~~~~~~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~ 136 (239)
T cd07647 57 TLKSSWDSLRKETENVANAHIQLAQSLREEAEKLEEFREKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREK 136 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555666666666655555543333 34456666666666666777777777777765555
Q ss_pred hhHHHH---HHHH--HHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHH
Q 003487 547 NAADER---AKIL--ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 613 (816)
Q Consensus 547 ~aA~ER---ak~L--AaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQ 613 (816)
..|... ++.. ..|+--|+.|+.+.+..--+.+.+.......+..++.+-. .++..+.+.+|
T Consensus 137 e~a~~~~~~~~~~~~~ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~~~------~~~~~~~~~~Q 202 (239)
T cd07647 137 DKAEQAYEKSSSGAQPKEAEKLKKKAAQCKTSAEEADSAYKSSIGCLEDARVEWE------SEHATACQVFQ 202 (239)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 554322 2221 2355556666665555555444444443333333332222 34556677777
No 119
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=91.77 E-value=5.7 Score=49.21 Aligned_cols=228 Identities=26% Similarity=0.295 Sum_probs=116.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHhhhhhhHH---------------------HHHHHHHHHHH
Q 003487 506 QQRSVVNQLKSEMEKLQEEIKVQLVELESF---RNEYANVRLECNAAD---------------------ERAKILASEVI 561 (816)
Q Consensus 506 qQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l---~aErdaArle~~aA~---------------------ERak~LAaEVV 561 (816)
+-...+..|+-++++|++|+.--+-.--.+ +.|.|+.+..+..++ |=-++|-+|--
T Consensus 202 ~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlmDs~fykdRveelkedN~vLleeke 281 (1195)
T KOG4643|consen 202 RLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKE 281 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 334556666666666666665444333333 333444444444333 22233333344
Q ss_pred hHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccCCC-CCcc
Q 003487 562 GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFG-KTAA 640 (816)
Q Consensus 562 ~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRka~~~gk~~~~~-kns~ 640 (816)
-|||++..+|-.- +-..+..+|-.|++|+--++-+|.-.|.-++.|++|-.-||..=+++-++=....+. .+.
T Consensus 282 MLeeQLq~lrars-----e~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~- 355 (1195)
T KOG4643|consen 282 MLEEQLQKLRARS-----EGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENE- 355 (1195)
T ss_pred HHHHHHHHHHhcc-----ccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcch-
Confidence 4444444333221 112355667888999999999999999999999999988887776655543333221 111
Q ss_pred ccccccc--ccccccccCccc--cCCCCCCccCCCCCcCCCCCCCCCCcccccccccccccc------------hhhHHH
Q 003487 641 STVNAST--STEDLAITDTTL--DNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNI------------PHDQMR 704 (816)
Q Consensus 641 ~~kDAST--STdDLai~dd~~--~sSn~etlds~s~~s~~~s~~pllpe~G~~~l~g~~vsI------------p~DQlR 704 (816)
+....|. --++|-. |.+. ..-|..- +-+-.+-. . ..+++..+.+ -+.+
T Consensus 356 E~en~Sl~~e~eqLts-~ralkllLEnrrl-t~tleelq-s-----------ss~Ee~~SK~leleke~KnLs~k~e~-- 419 (1195)
T KOG4643|consen 356 ELENESLQVENEQLTS-DRALKLLLENRRL-TGTLEELQ-S-----------SSYEELISKHLELEKEHKNLSKKHEI-- 419 (1195)
T ss_pred hhhhhhHHHHHHHhhh-HHHHHHHHHhHHH-HHHHHHHh-h-----------hhHHHHHHHHHHHHHHhHhHhHHHHH--
Confidence 0011111 1111100 0000 0000000 00000000 0 1122222211 1222
Q ss_pred HHhhHHHHHH----------HHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhhhHH
Q 003487 705 MIHNINALIS----------ELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRL 755 (816)
Q Consensus 705 mI~NInaLis----------ELa~Ereel~~AL~~es~~~s~Lk~lN~ELsrKLE~qTQRL 755 (816)
|=++|+.|+- -|-.|++.|....+.-...+++-+.+|-++.+.|..+-|+.
T Consensus 420 Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~ 480 (1195)
T KOG4643|consen 420 LEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLE 480 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHH
Confidence 2355665543 33467888888888888888888888899999998888875
No 120
>PRK11281 hypothetical protein; Provisional
Probab=91.66 E-value=47 Score=42.04 Aligned_cols=47 Identities=13% Similarity=0.167 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHH
Q 003487 512 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILAS 558 (816)
Q Consensus 512 ~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAa 558 (816)
.++..++++.|+++...-..+......-.+||..-.+|..|.+.+-.
T Consensus 131 ~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~ 177 (1113)
T PRK11281 131 AQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRN 177 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444333333444444444455555555555554443
No 121
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.60 E-value=14 Score=45.04 Aligned_cols=145 Identities=26% Similarity=0.261 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCcccccccccccccccccCccccCCC
Q 003487 584 SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSN 663 (816)
Q Consensus 584 l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRka~~~gk~~~~~kns~~~kDASTSTdDLai~dd~~~sSn 663 (816)
.++.+-..+..|..+.|-|.-+.++|+.||-+-|.+|.+|.++.- |+..-+ -..+.--+..++
T Consensus 463 vr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~-Ekq~l~---~qlkq~q~a~~~------------- 525 (1118)
T KOG1029|consen 463 VRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAP-EKQELN---HQLKQKQSAHKE------------- 525 (1118)
T ss_pred heeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHH---HHHHHhhhhccC-------------
Confidence 344445556677888888999999999999999999999986532 221100 000000011111
Q ss_pred CCCccCCCCCcCCCCCCCCCCcccc-cccccccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh-h
Q 003487 664 QDTHDDASLPRIDASGSTLLPESGR-LALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDL-N 741 (816)
Q Consensus 664 ~etlds~s~~s~~~s~~pllpe~G~-~~l~g~~vsIp~DQlRmI~NInaLisELa~Ereel~~AL~~es~~~s~Lk~l-N 741 (816)
.+++ +.|.. ..-+-+ -|+.-|.+-+-||+.|.+.=++-+-+-..++.+||+. |
T Consensus 526 ---------------------~~~~~s~L~a---a~~~ke-~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~ 580 (1118)
T KOG1029|consen 526 ---------------------TTQRKSELEA---ARRKKE-LIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVN 580 (1118)
T ss_pred ---------------------cchHHHHHHH---HHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 1111 11110 011111 2567788888899988888887777777777777653 2
Q ss_pred -----------HHHHHHHHHhhhHHHHHHHHHhhhhcccc
Q 003487 742 -----------NELSRKLEHQTQRLELLTAQNMANENISF 770 (816)
Q Consensus 742 -----------~ELsrKLE~qTQRLELltsq~ma~e~~~a 770 (816)
+|-...-|++|.+|||.--+.......++
T Consensus 581 ~q~lake~~yk~e~d~~ke~et~~lel~~~ke~e~~~asa 620 (1118)
T KOG1029|consen 581 SQQLAKEELYKNERDKLKEAETKALELIGEKEAESAPASA 620 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhc
Confidence 23334457889999998776665444443
No 122
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=91.54 E-value=23 Score=42.93 Aligned_cols=96 Identities=26% Similarity=0.337 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhH---HHHHHHHHH-HHHHHHHHHHHHHh--------
Q 003487 465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRS---VVNQLKSEM-EKLQEEIKVQLVEL-------- 532 (816)
Q Consensus 465 LqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~---~v~qLk~dm-EqLq~Ei~aQ~~~l-------- 532 (816)
++..|+-|+-|+-.--..+..+|.+++.|-..|-++-..||.-.+ .-+.||.+- .+.++.+..|...|
T Consensus 521 ~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~E 600 (961)
T KOG4673|consen 521 LQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKE 600 (961)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667666666666777777777777777777776666555 223343211 11111111111111
Q ss_pred -------hhhHHHHHHHhhhhhhHHHHHHHHHHHH
Q 003487 533 -------ESFRNEYANVRLECNAADERAKILASEV 560 (816)
Q Consensus 533 -------e~l~aErdaArle~~aA~ERak~LAaEV 560 (816)
.-|+.|..-.+.+..+|.-|+..|.-+|
T Consensus 601 q~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v 635 (961)
T KOG4673|consen 601 QQAARREDMFRGEIEDLQRRLQAAERRCEELIQQV 635 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2345666666666667766666655544
No 123
>PRK01156 chromosome segregation protein; Provisional
Probab=91.54 E-value=31 Score=41.16 Aligned_cols=70 Identities=10% Similarity=0.164 Sum_probs=34.7
Q ss_pred HHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHH----------HHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhh
Q 003487 528 QLVELESFRNEYANVRLECNAADERAKILASEVIGLEE----------KALRLRSNELKLERQLENSQSEISSYKKKISS 597 (816)
Q Consensus 528 Q~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEE----------k~l~LRS~ELKlerele~l~~E~~s~~rqlss 597 (816)
....++....++...+..+....++...+..++-.|+. ++.+++..--+++.+++.+..++..++.++..
T Consensus 627 ~~~~le~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~ 706 (895)
T PRK01156 627 EANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEI 706 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555666666666666666666555555554443 33444444344444444444444444443333
No 124
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=91.48 E-value=3.6 Score=42.94 Aligned_cols=99 Identities=26% Similarity=0.321 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHH
Q 003487 510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS 589 (816)
Q Consensus 510 ~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~ 589 (816)
.|.++++++++.++++..+.-...-|..++. -|.+-+..|..+...+|+-..+|+..--+.+++-+.|..++.
T Consensus 13 rL~q~eee~~~a~~~L~e~e~~a~~Leek~k-------~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~ 85 (246)
T PF00769_consen 13 RLRQMEEEMRRAQEALEESEETAEELEEKLK-------QAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELR 85 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554444333333333333 344455667777777777777777666655555555555555
Q ss_pred HHHHHhhhHHHhhhhhHHHHHHHHHH
Q 003487 590 SYKKKISSLEKERQDFQSTIEALQEE 615 (816)
Q Consensus 590 s~~rqlsslekeR~~lqsti~ALQEE 615 (816)
.+...+..+..++..-......||++
T Consensus 86 e~~~~i~~l~ee~~~ke~Ea~~lq~e 111 (246)
T PF00769_consen 86 EAEAEIARLEEESERKEEEAEELQEE 111 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555554444444333344444433
No 125
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=91.20 E-value=36 Score=41.19 Aligned_cols=19 Identities=16% Similarity=0.372 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003487 510 VVNQLKSEMEKLQEEIKVQ 528 (816)
Q Consensus 510 ~v~qLk~dmEqLq~Ei~aQ 528 (816)
.+++++..+.+++..+...
T Consensus 601 ~~~~l~~~~~~l~~~~~~~ 619 (908)
T COG0419 601 KLKELEERLSQLEELLQSL 619 (908)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3334444444444444444
No 126
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=91.19 E-value=11 Score=40.40 Aligned_cols=63 Identities=14% Similarity=0.214 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh--hhhhHHHHHHHHHHHHHhHHHHHHHHh
Q 003487 509 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL--ECNAADERAKILASEVIGLEEKALRLR 571 (816)
Q Consensus 509 ~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArl--e~~aA~ERak~LAaEVV~LEEk~l~LR 571 (816)
..+.-++++++++++++..-..+|..|+.+..-.-. ......+-...|-.+.+.+|.++..+|
T Consensus 170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~ 234 (362)
T TIGR01010 170 DTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLR 234 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666555433211 112233334444444455554444443
No 127
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=91.11 E-value=27 Score=42.13 Aligned_cols=147 Identities=20% Similarity=0.200 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHH--HHHHHHH----------HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003487 461 DFAALEQHIEDLTQEKFALQR--SLEASRA----------LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ 528 (816)
Q Consensus 461 ~faaLqqhIeDLT~EKfaLqR--~L~~s~~----------l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ 528 (816)
+.-.|-|++.+++++..+=.| ++.-... --+.+-..+.+|-..-=--|+.....++..-+|-+|+.-.
T Consensus 401 E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ek 480 (698)
T KOG0978|consen 401 ETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREK 480 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777777776655544 2222222 1112222333333333345667777788888888887777
Q ss_pred HHHhhhhHHHHHHHhhhhhhHHHHHHH--------------HHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHH
Q 003487 529 LVELESFRNEYANVRLECNAADERAKI--------------LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKK 594 (816)
Q Consensus 529 ~~~le~l~aErdaArle~~aA~ERak~--------------LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rq 594 (816)
.-..=.++.|++.+.+......+-=.. +-..|..|||+...+-+++=++.+++.-+..-++.+++.
T Consensus 481 dd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~ 560 (698)
T KOG0978|consen 481 DDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKK 560 (698)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHH
Confidence 777777788888887777665543322 233445566666655555555555554444444444444
Q ss_pred hhhHHHhhhhhHH
Q 003487 595 ISSLEKERQDFQS 607 (816)
Q Consensus 595 lsslekeR~~lqs 607 (816)
+--+.+...+|+.
T Consensus 561 ~~e~~~~~~~Lq~ 573 (698)
T KOG0978|consen 561 AQEAKQSLEDLQI 573 (698)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 128
>PLN03188 kinesin-12 family protein; Provisional
Probab=91.02 E-value=4 Score=51.40 Aligned_cols=68 Identities=22% Similarity=0.289 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHH-HH
Q 003487 476 KFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADER-AK 554 (816)
Q Consensus 476 KfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ER-ak 554 (816)
|-+||||++.--++.|+-|+ |-++||+.-..-....+=+.... ++||+....-|-.| ++
T Consensus 1099 ~~a~q~am~ghar~~e~ya~----l~ek~~~ll~~hr~i~egi~dvk----------------kaaakag~kg~~~~f~~ 1158 (1320)
T PLN03188 1099 KEAMQMAMEGHARMLEQYAD----LEEKHIQLLARHRRIQEGIDDVK----------------KAAARAGVRGAESKFIN 1158 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHhccccchHHHHH
Confidence 35777777777777777774 66677765544333333332111 23444444333333 78
Q ss_pred HHHHHHHhH
Q 003487 555 ILASEVIGL 563 (816)
Q Consensus 555 ~LAaEVV~L 563 (816)
+||||+-.|
T Consensus 1159 alaae~s~l 1167 (1320)
T PLN03188 1159 ALAAEISAL 1167 (1320)
T ss_pred HHHHHHHHH
Confidence 899998544
No 129
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=91.00 E-value=14 Score=34.93 Aligned_cols=32 Identities=31% Similarity=0.555 Sum_probs=23.6
Q ss_pred HhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 003487 594 KISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625 (816)
Q Consensus 594 qlsslekeR~~lqsti~ALQEEKklLqskLRk 625 (816)
+-..++++..++..-++.|.+.=++|+..|..
T Consensus 99 qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 99 QKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445566667777888888999999998864
No 130
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=90.60 E-value=19 Score=42.23 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 003487 605 FQSTIEALQEEKKMMQSKLRKA 626 (816)
Q Consensus 605 lqsti~ALQEEKklLqskLRka 626 (816)
|+..+++.++--..|..|+.++
T Consensus 381 L~Re~~~~~~~Y~~ll~r~~e~ 402 (754)
T TIGR01005 381 LQRDAAAKRQLYESYLTNYRQA 402 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444445555566543
No 131
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=90.56 E-value=9.6 Score=39.85 Aligned_cols=50 Identities=26% Similarity=0.393 Sum_probs=24.7
Q ss_pred HHHhhHHHHHHHHHH----HHHHHHHHHHHHHHH--hHHHHHhhHHHHHHHHHhhhHHH
Q 003487 704 RMIHNINALISELAL----EKEELVQALSSELAQ--SSKLKDLNNELSRKLEHQTQRLE 756 (816)
Q Consensus 704 RmI~NInaLisELa~----Ereel~~AL~~es~~--~s~Lk~lN~ELsrKLE~qTQRLE 756 (816)
+|=+-+.+|-+||+. +|...+..|+.+--+ .++.+.|.. -|.+.+.||+.
T Consensus 186 ~lq~QL~~L~~EL~~~kde~k~T~~D~~h~en~~~g~~ky~tl~~---i~~g~tk~ri~ 241 (246)
T PF00769_consen 186 RLQEQLKELKSELEQLKDEEKQTQLDIIHAENVRAGRDKYKTLRQ---IRQGNTKQRID 241 (246)
T ss_dssp HHHHHHHHHHHHHHTTB-CCG--HHHHHHHHHHHTT--HHHHHHH---HT-S-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHhchhHHHHHHH---HhcCCHHHHHH
Confidence 444455666777765 457777777777433 234444432 34455666653
No 132
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.55 E-value=26 Score=43.84 Aligned_cols=153 Identities=18% Similarity=0.224 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHH
Q 003487 481 RSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEV 560 (816)
Q Consensus 481 R~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEV 560 (816)
|.|--.+.-.+.|-..-.+....-++-.+++....++|+++..+|..-...|..++.|-.-+..+.+.+...--.|--++
T Consensus 230 rEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~ 309 (1200)
T KOG0964|consen 230 RELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKI 309 (1200)
T ss_pred hHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 44555555556666666666666666677777777778877777777777778888877777777777776666666677
Q ss_pred HhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh-hcCCCCcc
Q 003487 561 IGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK-ASGSGKSI 633 (816)
Q Consensus 561 V~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRk-a~~~gk~~ 633 (816)
-.|-+++..-+-+.-.....++.+.++|..-+..++.++..+.+|+..=+.+..--+.|+.+.+- ++-+|+..
T Consensus 310 kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~s 383 (1200)
T KOG0964|consen 310 KDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYS 383 (1200)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 77777776555555555667888888999999999999999988888777777767777777776 45566653
No 133
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=90.44 E-value=1.8 Score=39.34 Aligned_cols=67 Identities=18% Similarity=0.287 Sum_probs=49.9
Q ss_pred hHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Q 003487 562 GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 628 (816)
Q Consensus 562 ~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRka~~ 628 (816)
.||+||.+.=-.--=|+-|+++++.+-..+...+..+..-|..|....+.|++|...-|.|||.+.+
T Consensus 8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLG 74 (79)
T PRK15422 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777776553333335566667766666677777777777888999999999999999999996554
No 134
>PRK11519 tyrosine kinase; Provisional
Probab=90.36 E-value=11 Score=44.48 Aligned_cols=9 Identities=11% Similarity=0.150 Sum_probs=3.8
Q ss_pred HHHHHHHHh
Q 003487 617 KMMQSKLRK 625 (816)
Q Consensus 617 klLqskLRk 625 (816)
..|.+|+.+
T Consensus 387 ~~lL~r~~e 395 (719)
T PRK11519 387 MQLLNKQQE 395 (719)
T ss_pred HHHHHHHHH
Confidence 334444443
No 135
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.26 E-value=8.9 Score=36.80 Aligned_cols=63 Identities=25% Similarity=0.300 Sum_probs=45.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHH---HHHHHHHHhHHHHHH
Q 003487 506 QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA---KILASEVIGLEEKAL 568 (816)
Q Consensus 506 qQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERa---k~LAaEVV~LEEk~l 568 (816)
-....|+.|+..+.+++-|+.+-...++.+..+|+.++.+....+++. +....++-.|+.++.
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~ 78 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELE 78 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688999999999999999999999999999998776666555544 333444444444443
No 136
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=90.24 E-value=22 Score=37.15 Aligned_cols=116 Identities=21% Similarity=0.224 Sum_probs=75.6
Q ss_pred HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHH-----HHHHh
Q 003487 488 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILA-----SEVIG 562 (816)
Q Consensus 488 ~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LA-----aEVV~ 562 (816)
.|++.|-.+-..|..=.+.|......+...|+++|.-...+...|+.-+..|.++-.+...|......+- .|+--
T Consensus 78 ~ia~~L~~~~~~l~~f~~~qke~rK~~e~~~eK~qk~~~~~~k~l~ksKk~Ye~~Cke~~~a~q~~~k~~~~~t~keleK 157 (242)
T cd07671 78 QLAGMLREELKSLEEFRERQKEQRKKYEAVMERVQKSKVSLYKKTMESKKTYEQRCREADEAEQTFERSSSTGNPKQSEK 157 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHH
Confidence 4666676666667777788888999999999999999999999999999888887777666643321111 33334
Q ss_pred HHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhh----hhHHHHHHHH
Q 003487 563 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQ----DFQSTIEALQ 613 (816)
Q Consensus 563 LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~----~lqsti~ALQ 613 (816)
++.|+.+.+.+--+. ...|+.-|..+.+-|. ++..+.+.+|
T Consensus 158 ~~~K~~k~~~~~~~a----------~~~Y~~~v~~l~~~~~~w~~~~~~~~~~~Q 202 (242)
T cd07671 158 SQNKAKQCRDAATEA----------ERVYKQNIEQLDKARTEWETEHILTCEVFQ 202 (242)
T ss_pred HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444333333333 3455555555555443 4556777777
No 137
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.21 E-value=31 Score=43.82 Aligned_cols=100 Identities=19% Similarity=0.193 Sum_probs=45.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhh----hh
Q 003487 499 SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS----NE 574 (816)
Q Consensus 499 aLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS----~E 574 (816)
.+...|++-...=-..++.++++.+.|.--...++..+.++..+...-..+..--..+-.|+-.|++...+++. .-
T Consensus 388 ~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~ 467 (1293)
T KOG0996|consen 388 SLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEIL 467 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555544444445555555554444444444444444444444444444444444555555544443322 11
Q ss_pred hhhHHHHhhhHHHHHHHHHHhhhH
Q 003487 575 LKLERQLENSQSEISSYKKKISSL 598 (816)
Q Consensus 575 LKlerele~l~~E~~s~~rqlssl 598 (816)
.+++++-++++.|+...++.+.-+
T Consensus 468 ~~l~~~t~~~~~e~~~~ekel~~~ 491 (1293)
T KOG0996|consen 468 DSLKQETEGIREEIEKLEKELMPL 491 (1293)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHH
Confidence 223333344444444444444433
No 138
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=90.12 E-value=37 Score=42.00 Aligned_cols=61 Identities=18% Similarity=0.155 Sum_probs=45.2
Q ss_pred ccchhhHHHHHhhHHHHHHHHHHH------HHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhhhHHHHHHHHHhhh
Q 003487 696 VNIPHDQMRMIHNINALISELALE------KEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMAN 765 (816)
Q Consensus 696 vsIp~DQlRmI~NInaLisELa~E------reel~~AL~~es~~~s~Lk~lN~ELsrKLE~qTQRLELltsq~ma~ 765 (816)
---.+.+-.||+-|.+|+..++.. -+.|-.++.-+..+|..|++ |.|.-+|++--+.+.+-
T Consensus 455 rraIeQcnemv~rir~l~~sle~qrKVeqe~emlKaen~rqakkiefmkE---------eiQethldyR~els~lA 521 (1265)
T KOG0976|consen 455 RRAIEQCNEMVDRIRALMDSLEKQRKVEQEYEMLKAENERQAKKIEFMKE---------EIQETHLDYRSELSELA 521 (1265)
T ss_pred hhHHHHHHHHHHHHHHHhhChhhhcchHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHh
Confidence 345688999999999999988754 46677777777888888876 45666777766665544
No 139
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=90.09 E-value=9.6 Score=38.05 Aligned_cols=32 Identities=38% Similarity=0.614 Sum_probs=27.8
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Q 003487 597 SLEKERQDFQSTIEALQEEKKMMQSKLRKASG 628 (816)
Q Consensus 597 slekeR~~lqsti~ALQEEKklLqskLRka~~ 628 (816)
..+.++++|+.-|+.||+|-|.|+.++++.+.
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~ 117 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLELKLKNLSD 117 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 66788999999999999999999999986554
No 140
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=90.01 E-value=53 Score=39.84 Aligned_cols=39 Identities=23% Similarity=0.509 Sum_probs=20.7
Q ss_pred HHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 003487 587 EISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625 (816)
Q Consensus 587 E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRk 625 (816)
....+...+..+.+++..+...++.+.++.+.++..+..
T Consensus 404 ~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 442 (908)
T COG0419 404 ALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQ 442 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555555555553
No 141
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=89.88 E-value=28 Score=36.38 Aligned_cols=130 Identities=18% Similarity=0.239 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhH--------------------HHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 003487 478 ALQRSLEASRALSESLAAENSSLTDSYNQQRS--------------------VVNQLKSEMEKLQEEIKVQLVELESFRN 537 (816)
Q Consensus 478 aLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~--------------------~v~qLk~dmEqLq~Ei~aQ~~~le~l~a 537 (816)
.|..++..-..=++.+|..+..|.++...+-. ....+...++.+|..+..+...|+..+.
T Consensus 61 sl~~aw~~~~~e~e~~a~~H~~l~~~L~~~v~~~i~~~~~e~~~k~~~~~~ke~K~~e~~~~kaqk~~~~~~~~l~kaKk 140 (258)
T cd07655 61 TLETAWKGLLSEAERLSELHLSIRDKLLNDVVEEVKTWQKENYHKSMMGGFKETKEAEDGFAKAQKPWAKLLKKVEKAKK 140 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45555555555666666666666666555422 2334445555666666666677777777
Q ss_pred HHHHHhhhhhhHHHHHHHH-------HHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhh----hhH
Q 003487 538 EYANVRLECNAADERAKIL-------ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQ----DFQ 606 (816)
Q Consensus 538 ErdaArle~~aA~ERak~L-------AaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~----~lq 606 (816)
-|..+=.+...|....... ..|+--++.|+.+....--+.+ ..|+.+|..+.+.+. +|-
T Consensus 141 ~Y~~~cke~e~a~~~~~~~~~d~~~~~~eleK~~~k~~k~~~~~~~~~----------~~Y~~~l~~~n~~~~~y~~~m~ 210 (258)
T cd07655 141 AYHAACKAEKSAQKQENNAKSDTSLSPDQVKKLQDKVEKCKQEVSKTK----------DKYEKALEDLNKYNPRYMEDME 210 (258)
T ss_pred HHHHHHHHHHHHHHHHHhcccCccCCHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhhHHHHHHHH
Confidence 7777655555555544322 2455555555544433333333 445555555554443 466
Q ss_pred HHHHHHH--HHHH
Q 003487 607 STIEALQ--EEKK 617 (816)
Q Consensus 607 sti~ALQ--EEKk 617 (816)
.+++.|| ||.+
T Consensus 211 ~~~~~~Q~lEe~R 223 (258)
T cd07655 211 QVFDKCQEFEEKR 223 (258)
T ss_pred HHHHHHHHHHHHH
Confidence 7888888 5553
No 142
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=89.86 E-value=36 Score=37.68 Aligned_cols=119 Identities=24% Similarity=0.373 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh------h--hhhHHHHHHHHHHHHHhHHHHHHHH-------h
Q 003487 507 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL------E--CNAADERAKILASEVIGLEEKALRL-------R 571 (816)
Q Consensus 507 Q~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArl------e--~~aA~ERak~LAaEVV~LEEk~l~L-------R 571 (816)
|-..|+.|+..+.+|+.+..+....|+.|+.|------ + .|--.-|.-.|++|=-.|++++-+- |
T Consensus 133 qE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~ 212 (310)
T PF09755_consen 133 QEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPR 212 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcc
Confidence 34445566666666666555555555555443221000 0 1222334555555555555555430 0
Q ss_pred ---------hhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhh----HHHHHHHHHHHHHHHHHHHh
Q 003487 572 ---------SNELKLERQLENSQSEISSYKKKISSLEKERQDF----QSTIEALQEEKKMMQSKLRK 625 (816)
Q Consensus 572 ---------S~ELKlerele~l~~E~~s~~rqlsslekeR~~l----qsti~ALQEEKklLqskLRk 625 (816)
..-=++...+..|+.|+.++++++.+.+++...- ......+++|-+.||-+|+.
T Consensus 213 d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~eek~ireEN~rLqr~L~~ 279 (310)
T PF09755_consen 213 DTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQYLQEEKEIREENRRLQRKLQR 279 (310)
T ss_pred hHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0012344555578888888888888776665432 22235566777888888873
No 143
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=89.84 E-value=14 Score=38.22 Aligned_cols=26 Identities=19% Similarity=0.096 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHH----hhcCCCCccCC
Q 003487 610 EALQEEKKMMQSKLR----KASGSGKSIDF 635 (816)
Q Consensus 610 ~ALQEEKklLqskLR----ka~~~gk~~~~ 635 (816)
..++.+-+.++.+|. +++..|.....
T Consensus 189 ~~~~~~l~~a~~~l~~~~I~AP~~G~V~~~ 218 (334)
T TIGR00998 189 QEAKERLKTAWLALKRTVIRAPFDGYVARR 218 (334)
T ss_pred HHHHHHHHHHHHHhhCcEEEcCCCcEEEEE
Confidence 333444444444454 46777775433
No 144
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=89.68 E-value=0.1 Score=60.64 Aligned_cols=17 Identities=29% Similarity=0.692 Sum_probs=9.1
Q ss_pred HHHHHHHHHHhhcCCCC
Q 003487 791 VVERVLGWIMKLFPGGP 807 (816)
Q Consensus 791 VveRvlgwimklfpgg~ 807 (816)
||--+|||-..+.|.|.
T Consensus 639 av~~llGyki~~~~~~~ 655 (722)
T PF05557_consen 639 AVYSLLGYKIDFMPNGR 655 (722)
T ss_dssp HHHHHHSEEEEEETTTE
T ss_pred HHHHHhcceeeecCCCe
Confidence 45555666555555543
No 145
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=89.62 E-value=13 Score=32.07 Aligned_cols=56 Identities=14% Similarity=0.275 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHH
Q 003487 551 ERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 613 (816)
Q Consensus 551 ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQ 613 (816)
.....+..-+..|+..+.+. +.+++.+..++..++..+..+..++.-+..+.+.-+
T Consensus 45 ~~~~~~~~~~~~l~~~i~~~-------~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~e~~~ 100 (123)
T PF02050_consen 45 AQLRNYQRYISALEQAIQQQ-------QQELERLEQEVEQAREELQEARRERKKLEKLKERRR 100 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555544 444445555555555555555555555555544433
No 146
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=89.60 E-value=29 Score=36.21 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=12.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHH
Q 003487 705 MIHNINALISELALEKEELVQAL 727 (816)
Q Consensus 705 mI~NInaLisELa~Ereel~~AL 727 (816)
.|.-+..+.-||-.|+.+|-.-|
T Consensus 166 ~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 166 TIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555655555554443
No 147
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=89.59 E-value=64 Score=40.18 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=14.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH
Q 003487 706 IHNINALISELALEKEELVQALSSE 730 (816)
Q Consensus 706 I~NInaLisELa~Ereel~~AL~~e 730 (816)
-|+|++|.-.+..+--..+-.|.++
T Consensus 684 ~d~v~~l~k~~~~~a~~~~~~l~~~ 708 (980)
T KOG0980|consen 684 SDRVNDLCKKCGREALAFLVSLSSE 708 (980)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3566666666665555555555544
No 148
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=89.49 E-value=23 Score=34.99 Aligned_cols=79 Identities=25% Similarity=0.347 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHH
Q 003487 511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS 589 (816)
Q Consensus 511 v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~ 589 (816)
..-|++.++-|++++..-.-.++.+-.+-.+++.+|..-.+.-..++.+.-.|+..+-.+|+.--.+.++++..+..|+
T Consensus 19 ~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~ 97 (140)
T PF10473_consen 19 KDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVS 97 (140)
T ss_pred HhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555666666555555666666666666666666555555555444443333
No 149
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=89.49 E-value=35 Score=37.10 Aligned_cols=34 Identities=12% Similarity=0.225 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 003487 508 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 541 (816)
Q Consensus 508 ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErda 541 (816)
.....-|.++++++++++.....++..|+.+..-
T Consensus 170 ~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i 203 (444)
T TIGR03017 170 QKAALWFVQQIAALREDLARAQSKLSAYQQEKGI 203 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3456667777777777777777777787777644
No 150
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=89.47 E-value=46 Score=38.33 Aligned_cols=119 Identities=25% Similarity=0.285 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHH
Q 003487 480 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASE 559 (816)
Q Consensus 480 qR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaE 559 (816)
...|+..+..-+....|-..|.....-....+...|.++.++++....--..+.+|..|....+.+...+.+.-...-..
T Consensus 287 ~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~ 366 (522)
T PF05701_consen 287 KKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEA 366 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhh
Confidence 34556666666666666666776666677777777777777777666666667777777777776665544333322223
Q ss_pred HHhHHHHHHHHhh-------hhhhhHHHHhhhHHHHHHHHHHhhhH
Q 003487 560 VIGLEEKALRLRS-------NELKLERQLENSQSEISSYKKKISSL 598 (816)
Q Consensus 560 VV~LEEk~l~LRS-------~ELKlerele~l~~E~~s~~rqlssl 598 (816)
+..|-..+.++.+ ..-..+.++..++.+++.++..+..+
T Consensus 367 ~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~ 412 (522)
T PF05701_consen 367 MSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTA 412 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444433 33333444444444444444444433
No 151
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=89.12 E-value=10 Score=39.06 Aligned_cols=62 Identities=19% Similarity=0.264 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 003487 480 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 541 (816)
Q Consensus 480 qR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErda 541 (816)
.+.=.++++-.+.+++|-..|.+.|-+...++..|+...++|+..+..|..+++.+..+.+.
T Consensus 34 ~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~ 95 (251)
T PF11932_consen 34 VQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQ 95 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445667777888888888888888888888888888888888888888877777665554
No 152
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=89.03 E-value=22 Score=36.62 Aligned_cols=62 Identities=19% Similarity=0.255 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003487 463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 524 (816)
Q Consensus 463 aaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~E 524 (816)
+..|+-|+++..||-.|+..+.+-.+=.+.|-..|..+.+....|...+.+|+.+++.++..
T Consensus 38 ~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~ 99 (251)
T PF11932_consen 38 QQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEET 99 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778899999999999999999999899999999999888888888888888888766653
No 153
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=88.97 E-value=35 Score=40.50 Aligned_cols=94 Identities=23% Similarity=0.314 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 003487 463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 542 (816)
Q Consensus 463 aaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaA 542 (816)
-.|+.-|+.|-.|+-.|..-|+.+.+ +|+.|..-..+|...+.+|.+.+++++.+..-+..-|+.+..++..+
T Consensus 83 ~~Lq~E~~~L~kElE~L~~qlqaqv~-------~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~ 155 (617)
T PF15070_consen 83 QQLQAEAEHLRKELESLEEQLQAQVE-------NNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATA 155 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHH
Confidence 46777777777777777766665544 45555555567888888888888888888776666677776666542
Q ss_pred hhhhhhHHHHHHHHHHHHHhHHHHH
Q 003487 543 RLECNAADERAKILASEVIGLEEKA 567 (816)
Q Consensus 543 rle~~aA~ERak~LAaEVV~LEEk~ 567 (816)
-.|-..-+.|=..+..|+++.
T Consensus 156 ----SRAlsQN~eLK~QL~Elq~~F 176 (617)
T PF15070_consen 156 ----SRALSQNRELKEQLAELQDAF 176 (617)
T ss_pred ----HHHHHhHHHHHHHHHHHHHHH
Confidence 223334445555555555533
No 154
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=88.79 E-value=50 Score=37.90 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003487 462 FAALEQHIEDLTQEKFALQRSLEA 485 (816)
Q Consensus 462 faaLqqhIeDLT~EKfaLqR~L~~ 485 (816)
++.+++-|.+--++.-.|+..|..
T Consensus 47 i~~~~~~i~~~~~~~~kL~~~lk~ 70 (420)
T COG4942 47 IAALEKKIREQQDQRAKLEKQLKS 70 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 155
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=88.74 E-value=43 Score=38.22 Aligned_cols=29 Identities=34% Similarity=0.578 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 003487 460 EDFAALEQHIEDLTQ-EKFALQRSLEASRA 488 (816)
Q Consensus 460 ~~faaLqqhIeDLT~-EKfaLqR~L~~s~~ 488 (816)
.++..|++-|.+|+. ++-.++++|+.+.+
T Consensus 258 ~~i~~L~~~l~~l~~~~~~~l~~~L~~q~~ 287 (582)
T PF09731_consen 258 ERIDALQKELAELKEEEEEELERALEEQRE 287 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677776666665 55577888887764
No 156
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=88.56 E-value=10 Score=43.41 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=9.1
Q ss_pred HHHHHhhhHHHHHHHHhh
Q 003487 491 ESLAAENSSLTDSYNQQR 508 (816)
Q Consensus 491 EsLA~ENsaLTd~yNqQ~ 508 (816)
|-|++-|.+|.+.|-+|-
T Consensus 13 qr~~~~~~~laq~~k~~s 30 (459)
T KOG0288|consen 13 QRLIDLNTELAQCEKAQS 30 (459)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 445555555555554443
No 157
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=88.56 E-value=9.8 Score=45.98 Aligned_cols=41 Identities=27% Similarity=0.247 Sum_probs=22.5
Q ss_pred cCCCCCCCCCCcccccccccccc-cchhhHHHHHhhHHHHHHHHHHHH
Q 003487 674 RIDASGSTLLPESGRLALEGLAV-NIPHDQMRMIHNINALISELALEK 720 (816)
Q Consensus 674 s~~~s~~pllpe~G~~~l~g~~v-sIp~DQlRmI~NInaLisELa~Er 720 (816)
+.--+..+++++.|.. +--+. .|+ +| ++-||+=|-++.+|+
T Consensus 346 ~~~hs~~dl~~psG~~--a~~lAmmlq-~~---ldain~eirliqeEk 387 (916)
T KOG0249|consen 346 ETLHSSADLLSPSGAS--AQTLAMMLQ-EQ---LDAINKEIRLIQEEK 387 (916)
T ss_pred hhhhccccccCcchhh--hhhhhhhcc-cC---CCcccchhhHhHhhh
Confidence 3344555777777775 11111 222 22 356777777777777
No 158
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=88.45 E-value=23 Score=40.80 Aligned_cols=143 Identities=22% Similarity=0.222 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHH
Q 003487 474 QEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA 553 (816)
Q Consensus 474 ~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERa 553 (816)
+++..+-|-+..-++=|++|-+.--+.-|+--.....+-+|.-..-+|++.++.|.+--+..-+|+..-.-+.-.-.||-
T Consensus 215 e~r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eRe 294 (502)
T KOG0982|consen 215 EERIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKERE 294 (502)
T ss_pred chhhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445555443222222223333344444444445555555555555555566666666677777887
Q ss_pred HHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHH-------HHHHHHHHHHHh
Q 003487 554 KILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ-------EEKKMMQSKLRK 625 (816)
Q Consensus 554 k~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQ-------EEKklLqskLRk 625 (816)
+.|-.| .|+-|+.+| +.+...++..+-+++....-++-++|.+-..|++|. ++++..-.+||+
T Consensus 295 asle~E--nlqmr~qql-------eeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrr 364 (502)
T KOG0982|consen 295 ASLEKE--NLQMRDQQL-------EEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRR 364 (502)
T ss_pred HHHHHH--HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766444 344444433 555666777777777777777788877777777765 455555566664
No 159
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=88.45 E-value=75 Score=39.50 Aligned_cols=14 Identities=29% Similarity=0.541 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHHHH
Q 003487 461 DFAALEQHIEDLTQ 474 (816)
Q Consensus 461 ~faaLqqhIeDLT~ 474 (816)
++..+++.++++..
T Consensus 531 ~l~~~~~~~~~~~~ 544 (1047)
T PRK10246 531 RLDALEKEVKKLGE 544 (1047)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555554433
No 160
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=88.22 E-value=40 Score=36.94 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=18.9
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHH-----hhcCCCCc
Q 003487 600 KERQDFQSTIEALQEEKKMMQSKLR-----KASGSGKS 632 (816)
Q Consensus 600 keR~~lqsti~ALQEEKklLqskLR-----ka~~~gk~ 632 (816)
.+...++.-+..++.+...++..|. +++-.|.+
T Consensus 227 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~i~AP~dG~V 264 (421)
T TIGR03794 227 KELETVEARIKEARYEIEELENKLNLNTRIVSQHSGRV 264 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEcCCCeEE
Confidence 3445555666666666666666663 24555554
No 161
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=88.14 E-value=47 Score=36.78 Aligned_cols=150 Identities=21% Similarity=0.365 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003487 463 AALEQHIEDLTQEKFALQRSLEASRA-----------LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE 531 (816)
Q Consensus 463 aaLqqhIeDLT~EKfaLqR~L~~s~~-----------l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~ 531 (816)
||++.|=+-.|.+ --|.++++++++ =+-.|-+.|+-|+.....--+.++-|+-++-..+.-+.---++
T Consensus 102 aAi~d~dqsq~sk-rdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~ 180 (305)
T PF14915_consen 102 AAIQDHDQSQTSK-RDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLA 180 (305)
T ss_pred HHHhhHHHHHhhH-HHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443 346666666665 3446778888999888888888899999998888888888889
Q ss_pred hhhhHHHHHHHhhhhhhH-----HHHHH--HHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhh
Q 003487 532 LESFRNEYANVRLECNAA-----DERAK--ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQD 604 (816)
Q Consensus 532 le~l~aErdaArle~~aA-----~ERak--~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~ 604 (816)
|+.+..+..-++....+. .|+++ ..-.-=-.||||+-++-|.-+=|+.||+.++.+...-++-|--+. ..
T Consensus 181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ---~~ 257 (305)
T PF14915_consen 181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQ---DQ 257 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HH
Confidence 998876666655443332 23332 233344578999999999999999999999988877777776552 34
Q ss_pred hHHHHHHHHHHH
Q 003487 605 FQSTIEALQEEK 616 (816)
Q Consensus 605 lqsti~ALQEEK 616 (816)
++.+|..||-|.
T Consensus 258 f~d~~~~L~ae~ 269 (305)
T PF14915_consen 258 FQDIVKKLQAES 269 (305)
T ss_pred HHHHHHHHHHHH
Confidence 566777777433
No 162
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=88.07 E-value=32 Score=34.85 Aligned_cols=133 Identities=16% Similarity=0.259 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHh------------hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 003487 478 ALQRSLEASRALSESLAAENSSLTDSYNQQ------------RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE 545 (816)
Q Consensus 478 aLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ------------~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle 545 (816)
++..+...-..-++.+|..+..+.+.++.+ ......+..++++++.++......++..+.-|..+-.+
T Consensus 62 s~~~aw~~i~~e~~~~a~~H~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke 141 (251)
T cd07653 62 SSVKAFRSILNEVNDIAGQHELIAENLNSNVCKELKTLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKE 141 (251)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555666666666666666533 23344456667777777777777777777777777666
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhh-----hhHHHHHHHH
Q 003487 546 CNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQ-----DFQSTIEALQ 613 (816)
Q Consensus 546 ~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~-----~lqsti~ALQ 613 (816)
...|...-....+.-..=..++.+++...-+...+++.++ ..|...|..+.+... .|-.+++.||
T Consensus 142 ~~~a~~k~~~~~~~~~~s~~~~eK~~~k~~k~~~~~~~a~---~~Y~~~l~~~N~~~~~~y~~~~p~~~~~~q 211 (251)
T cd07653 142 AEKAKQKYEKADADMNLTKADVEKAKANANLKTQAAEEAK---NEYAAQLQKFNKEQRQHYSTDLPQIFDKLQ 211 (251)
T ss_pred HHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 6666543322221100000111112222222222222222 456666666655532 5667777777
No 163
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=88.03 E-value=0.15 Score=60.85 Aligned_cols=126 Identities=18% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHh
Q 003487 492 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 571 (816)
Q Consensus 492 sLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LR 571 (816)
.|..|.+.++-..-.+...+.+|.....+|..++......++.+..|+++++.+|... ..||..|...+-.++
T Consensus 353 rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~-------~te~~~Lk~~lee~~ 425 (859)
T PF01576_consen 353 RLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREAREL-------ETELFKLKNELEELQ 425 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHhhhHHHH
Confidence 3555666666555566666666666666666666666677777788888877776554 455555555555444
Q ss_pred hhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 003487 572 SNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 624 (816)
Q Consensus 572 S~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLR 624 (816)
...-.++|+...|..||.-+..++....+..++|.-....|..|+.-|+..|.
T Consensus 426 e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~le 478 (859)
T PF01576_consen 426 EQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLE 478 (859)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556656666666666555555555555555555555555554444444
No 164
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=87.97 E-value=45 Score=42.16 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHH
Q 003487 551 ERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL 612 (816)
Q Consensus 551 ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~AL 612 (816)
.+-..|-+|...|+.++..++-.-+-..+-.+=++...+-+++++..++++-+.||..|+..
T Consensus 173 a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~k 234 (1109)
T PRK10929 173 AQLTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQ 234 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777665544443333333344444445566666666666666666553
No 165
>PRK10884 SH3 domain-containing protein; Provisional
Probab=87.85 E-value=5.7 Score=40.88 Aligned_cols=11 Identities=9% Similarity=0.069 Sum_probs=4.5
Q ss_pred hhHHHHHHHHH
Q 003487 604 DFQSTIEALQE 614 (816)
Q Consensus 604 ~lqsti~ALQE 614 (816)
.|...++++|+
T Consensus 157 ~l~~~~~~~~~ 167 (206)
T PRK10884 157 AANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHH
Confidence 33334444443
No 166
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=87.79 E-value=35 Score=34.96 Aligned_cols=118 Identities=18% Similarity=0.262 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHh
Q 003487 483 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIG 562 (816)
Q Consensus 483 L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~ 562 (816)
|.-.+.-.+.|.-||-.|-.-.-.|...++...+.=..|-+-|..+.-++-.++...-.++..+.++.-+-+..-+|+..
T Consensus 21 l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k 100 (194)
T PF15619_consen 21 LAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLK 100 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445678889999999888888888888887788888888888889999999999999999999999999999999
Q ss_pred HHHHHHHHhh--------hhhhhHHHHhhhHHHHHHHHHHhhhHHH
Q 003487 563 LEEKALRLRS--------NELKLERQLENSQSEISSYKKKISSLEK 600 (816)
Q Consensus 563 LEEk~l~LRS--------~ELKlerele~l~~E~~s~~rqlsslek 600 (816)
+++.+..|+- +.-+|.++|+.+..++..-++++..|++
T Consensus 101 ~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek 146 (194)
T PF15619_consen 101 TKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEK 146 (194)
T ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888754 1234556666666666666666666554
No 167
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=87.31 E-value=30 Score=44.04 Aligned_cols=29 Identities=28% Similarity=0.243 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhhH
Q 003487 713 ISELALEKEELVQALSSELAQSSKLKDLNN 742 (816)
Q Consensus 713 isELa~Ereel~~AL~~es~~~s~Lk~lN~ 742 (816)
|.+=|.|+.. +-+|.-+.....++...|.
T Consensus 1013 l~kkE~EkrK-v~~L~qlr~~l~k~~l~~q 1041 (1317)
T KOG0612|consen 1013 LRKKEKEKRK-VMELSQLRTKLNKLRLKNQ 1041 (1317)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhhhhH
Confidence 4455666666 7777777777777776665
No 168
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=87.30 E-value=4 Score=41.26 Aligned_cols=70 Identities=23% Similarity=0.395 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHH
Q 003487 477 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 556 (816)
Q Consensus 477 faLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~L 556 (816)
++++..|.......+.|..||.+|.+.-.+....+.+|+.+++.|+.+ +..+..+|.. .-..++||+.|
T Consensus 86 I~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~-------~~~~~eDY~~----L~~Im~RARkl 154 (161)
T TIGR02894 86 ISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQR-------LSTIEEDYQT----LIDIMDRARKL 154 (161)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH----HHHHHHHHHHH
Confidence 456667777777788899999999876666666666666665555554 5677777776 35689999998
Q ss_pred H
Q 003487 557 A 557 (816)
Q Consensus 557 A 557 (816)
+
T Consensus 155 ~ 155 (161)
T TIGR02894 155 A 155 (161)
T ss_pred H
Confidence 7
No 169
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=87.29 E-value=64 Score=37.45 Aligned_cols=154 Identities=14% Similarity=0.229 Sum_probs=95.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 003487 458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN 537 (816)
Q Consensus 458 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~a 537 (816)
=..++..+++.|+++..-=-.| .|..+.+..+.+.++-+.|-+.+=.....-..++..+..+..-|....-....+..
T Consensus 250 i~~~i~~i~~~l~~~~~~L~~l--~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~ 327 (560)
T PF06160_consen 250 IEEEIEQIEEQLEEALALLKNL--ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKE 327 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3455666665555543321111 45667777777777777777777666666667777777777777777778888899
Q ss_pred HHHHHhhhhhhH---HHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHH
Q 003487 538 EYANVRLECNAA---DERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 613 (816)
Q Consensus 538 ErdaArle~~aA---~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQ 613 (816)
|.++.++.+.=. .++.+.|..++-.|+.+...+.-.--.-..--..+..++.....++..++++=.++...+..|+
T Consensus 328 e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~ 406 (560)
T PF06160_consen 328 ELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLR 406 (560)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988887543 4688888888888888877653222111111222444444444445544444444444444444
No 170
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.16 E-value=4.5 Score=36.62 Aligned_cols=66 Identities=21% Similarity=0.285 Sum_probs=46.5
Q ss_pred hHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 003487 562 GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 627 (816)
Q Consensus 562 ~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRka~ 627 (816)
.||+|+.+.=-----|+-|+++|+.+--++...++.+..-|..|+...+.|++|-..-|.|||-+.
T Consensus 8 kLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLL 73 (79)
T COG3074 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777654322223455666666666666667777777788888888999999999999999543
No 171
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=87.10 E-value=74 Score=38.81 Aligned_cols=63 Identities=29% Similarity=0.343 Sum_probs=42.1
Q ss_pred hHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 003487 562 GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 624 (816)
Q Consensus 562 ~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLR 624 (816)
-||.+|-.||.+-=--.+-++++..+-.-+++|+.+-.|-=.-+.--|+.||+|-.-++.+.-
T Consensus 591 ~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~e 653 (786)
T PF05483_consen 591 ILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHE 653 (786)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 455556555554333344455577777777888777767666777788888888877776554
No 172
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=87.01 E-value=48 Score=39.25 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=17.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH
Q 003487 706 IHNINALISELALEKEELVQALSSE 730 (816)
Q Consensus 706 I~NInaLisELa~Ereel~~AL~~e 730 (816)
++-|..+|.-+.-++++|-+.|.+=
T Consensus 490 t~RIlEIv~NI~KQk~eI~KIl~DT 514 (594)
T PF05667_consen 490 TRRILEIVKNIRKQKEEIEKILSDT 514 (594)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4556666666677888887777653
No 173
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=86.99 E-value=38 Score=34.54 Aligned_cols=15 Identities=7% Similarity=0.127 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHH
Q 003487 461 DFAALEQHIEDLTQE 475 (816)
Q Consensus 461 ~faaLqqhIeDLT~E 475 (816)
-..+|.|.|.||-..
T Consensus 25 P~~~l~q~irem~~~ 39 (219)
T TIGR02977 25 PEKMIRLIIQEMEDT 39 (219)
T ss_pred HHHHHHHHHHHHHHH
Confidence 457899999888763
No 174
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=86.96 E-value=32 Score=41.18 Aligned_cols=85 Identities=15% Similarity=0.205 Sum_probs=66.7
Q ss_pred hhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 003487 544 LECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 623 (816)
Q Consensus 544 le~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskL 623 (816)
..|....++-+.|-.++..|+.++..++-++.++.++++....++.-. +..|+..+..|.... +-+++.|.|+-++
T Consensus 234 ~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~L~~~~~~l~~~~-~e~~~r~kL~N~i 309 (670)
T KOG0239|consen 234 GLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTL---QSDLESLEENLVEKK-KEKEERRKLHNEI 309 (670)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 344555666788888999999999999999999999998888665555 444555566666666 7778889999999
Q ss_pred HhhcCCCCc
Q 003487 624 RKASGSGKS 632 (816)
Q Consensus 624 Rka~~~gk~ 632 (816)
..+-++-++
T Consensus 310 ~eLkGnIRV 318 (670)
T KOG0239|consen 310 LELKGNIRV 318 (670)
T ss_pred HHhhcCceE
Confidence 999888886
No 175
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=86.94 E-value=44 Score=35.20 Aligned_cols=102 Identities=18% Similarity=0.249 Sum_probs=60.8
Q ss_pred HHHHHHHHhhhHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHH
Q 003487 488 ALSESLAAENSSLTDSYNQQRS--VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE 565 (816)
Q Consensus 488 ~l~EsLA~ENsaLTd~yNqQ~~--~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEE 565 (816)
..+++|-..-..+++.+|.-+| .|.+||..++.++..+++-+..+...+.+|+.|... --..=.||-.|=.
T Consensus 9 ~~~d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~-------Rs~sQrEvn~LLq 81 (207)
T PF05546_consen 9 FYMDSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQ-------RSSSQREVNELLQ 81 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHh
Confidence 4556666667778888998876 567777777777776666666666666666655443 2233346655533
Q ss_pred H-----------HHHHhhhhhhhHHHHhhhHHHHHHHHHHhh
Q 003487 566 K-----------ALRLRSNELKLERQLENSQSEISSYKKKIS 596 (816)
Q Consensus 566 k-----------~l~LRS~ELKlerele~l~~E~~s~~rqls 596 (816)
| -..|-.++=-.+++.+.++.++..++.+++
T Consensus 82 RK~sWs~~DleRFT~Lyr~dH~~e~~e~~ak~~l~~aE~~~e 123 (207)
T PF05546_consen 82 RKHSWSPADLERFTELYRNDHENEQAEEEAKEALEEAEEKVE 123 (207)
T ss_pred cccCCChHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 2 333433444455555556655555555555
No 176
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=86.84 E-value=26 Score=33.39 Aligned_cols=60 Identities=20% Similarity=0.276 Sum_probs=30.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003487 458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 524 (816)
Q Consensus 458 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~E 524 (816)
..++...+=..|-+| ....++-.+.-|+|.+.+-.+....=.+...+..|+.+++.++++
T Consensus 29 ~~~~~~~vin~i~~L-------l~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere 88 (151)
T PF11559_consen 29 SEDNDVRVINCIYDL-------LQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERE 88 (151)
T ss_pred ccccHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666554 334445555555555555555444444444445555555444444
No 177
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=86.80 E-value=38 Score=34.33 Aligned_cols=126 Identities=16% Similarity=0.233 Sum_probs=63.4
Q ss_pred hhHHHHHHHHH----------HHHHHHHHHHHHHHHH-HHHHHHHHH-------hhhHHHHHHHHhhHHHHHHHHHHHHH
Q 003487 460 EDFAALEQHIE----------DLTQEKFALQRSLEAS-RALSESLAA-------ENSSLTDSYNQQRSVVNQLKSEMEKL 521 (816)
Q Consensus 460 ~~faaLqqhIe----------DLT~EKfaLqR~L~~s-~~l~EsLA~-------ENsaLTd~yNqQ~~~v~qLk~dmEqL 521 (816)
|.|..|.+|++ ++=.|+-.+.+.-.+. ++|+..... ...++..-|+.--..+..+-..-+++
T Consensus 5 d~~~~l~~~~~~g~~~~~~l~~f~keRa~iE~eYak~L~kLa~k~~~~~~~~~~~~~s~~~aw~~i~~e~~~~a~~H~~~ 84 (251)
T cd07653 5 DQFDNLEKHTQKGIDFLERYGKFVKERAAIEQEYAKKLRKLVKKYLPKKKEEDEYSFSSVKAFRSILNEVNDIAGQHELI 84 (251)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555544 3445565555554443 233433221 12245566666665555555555555
Q ss_pred HHHHHHHH-HHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHH
Q 003487 522 QEEIKVQL-VELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEI 588 (816)
Q Consensus 522 q~Ei~aQ~-~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~ 588 (816)
-+.|..+. -.+..+..+....+-.+. +=...+-.++..+..++.+.|..--++.++++.+....
T Consensus 85 a~~l~~~v~~~l~~~~~~~~~~rK~~~---~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~ 149 (251)
T cd07653 85 AENLNSNVCKELKTLISELRQERKKHL---SEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKY 149 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554443 344455544444333333 33334555566666666666666666666655555443
No 178
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=86.70 E-value=66 Score=39.96 Aligned_cols=10 Identities=20% Similarity=0.218 Sum_probs=4.0
Q ss_pred HHHHHHHHhh
Q 003487 793 ERVLGWIMKL 802 (816)
Q Consensus 793 eRvlgwimkl 802 (816)
+.++.+|..|
T Consensus 994 ~~~~~~l~~l 1003 (1047)
T PRK10246 994 DTALDALDAL 1003 (1047)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 179
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=86.64 E-value=61 Score=37.68 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=36.3
Q ss_pred hHHHHhhhHHHHHHHH----HHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh-cCCCC
Q 003487 577 LERQLENSQSEISSYK----KKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA-SGSGK 631 (816)
Q Consensus 577 lerele~l~~E~~s~~----rqlsslekeR~~lqsti~ALQEEKklLqskLRka-~~~gk 631 (816)
++.+|+..+..+.... +.-.+|..+=..|......|..|-.-|...|+-- -..|.
T Consensus 145 l~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALkgd~K~rG~ 204 (475)
T PRK10361 145 LREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGN 204 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcc
Confidence 5666777666666544 3356677777777777777888877777777742 23444
No 180
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=86.46 E-value=45 Score=34.82 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHH----hhcCCCCc
Q 003487 607 STIEALQEEKKMMQSKLR----KASGSGKS 632 (816)
Q Consensus 607 sti~ALQEEKklLqskLR----ka~~~gk~ 632 (816)
..+..++..-+..+.+|. +++..|..
T Consensus 186 ~~~~~~~~~l~~a~~~l~~~~i~AP~dG~V 215 (327)
T TIGR02971 186 AEVKSALEAVQQAEALLELTYVKAPIDGRV 215 (327)
T ss_pred HHHHHHHHHHHHHHHHHhcCEEECCCCeEE
Confidence 344444444444444444 35555554
No 181
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=86.15 E-value=69 Score=40.46 Aligned_cols=10 Identities=50% Similarity=0.713 Sum_probs=4.3
Q ss_pred HHHHHHHHhh
Q 003487 743 ELSRKLEHQT 752 (816)
Q Consensus 743 ELsrKLE~qT 752 (816)
+|++-|+-|+
T Consensus 838 elr~a~~rq~ 847 (1195)
T KOG4643|consen 838 ELRRALDRQH 847 (1195)
T ss_pred HHHHHHHhhc
Confidence 3344444444
No 182
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=86.13 E-value=79 Score=37.30 Aligned_cols=19 Identities=11% Similarity=0.246 Sum_probs=8.1
Q ss_pred hhhHHHhhhhhHHHHHHHH
Q 003487 595 ISSLEKERQDFQSTIEALQ 613 (816)
Q Consensus 595 lsslekeR~~lqsti~ALQ 613 (816)
+..|+.|..-.+...+.|.
T Consensus 378 ~~~L~Re~~~~~~~Y~~ll 396 (754)
T TIGR01005 378 LDALQRDAAAKRQLYESYL 396 (754)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 183
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=86.11 E-value=22 Score=34.15 Aligned_cols=87 Identities=18% Similarity=0.266 Sum_probs=61.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHhhhh
Q 003487 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ-LVELESF 535 (816)
Q Consensus 457 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ-~~~le~l 535 (816)
..+...+.|+.+|++.....-.|...=+.=+....+|-++|.+++.+.|.....|.++...|+--.. +. .+...-.
T Consensus 13 el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~---ak~~l~~r~~ 89 (107)
T PF09304_consen 13 ELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQ---AKLELESRLL 89 (107)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 4566789999999999888777766666677788888889988888888888888888777755221 11 2222334
Q ss_pred HHHHHHHhhhh
Q 003487 536 RNEYANVRLEC 546 (816)
Q Consensus 536 ~aErdaArle~ 546 (816)
++|.|.|.++.
T Consensus 90 k~~~dka~lel 100 (107)
T PF09304_consen 90 KAQKDKAILEL 100 (107)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHhhhhHHHH
Confidence 66666665554
No 184
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=86.05 E-value=48 Score=34.73 Aligned_cols=105 Identities=13% Similarity=0.172 Sum_probs=64.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHH-----HHHHHHH
Q 003487 487 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK-----ILASEVI 561 (816)
Q Consensus 487 ~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak-----~LAaEVV 561 (816)
..|+++|..+-..|..=.+.|......++..++.++.....|.-.++.-+..|..+-.+...|..+.. ....|+=
T Consensus 78 ~~la~~L~~~~~~~~~f~~~qk~~rKk~e~~~ek~~K~~~~~~k~~~ksKk~Ye~~Cke~~~a~~~~~~~~~~~~~ke~~ 157 (240)
T cd07672 78 IQLAQTLRDEAKKMEDFRERQKLARKKIELIMDAIHKQRAMQFKKTMESKKNYEQKCRDKDEAEQAVNRNANLVNVKQQE 157 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHH
Confidence 34666666655545555577777788889999999998888888888887777765555444443321 1123444
Q ss_pred hHHHHHHHHhhhhhhhHHHHhhhHHHHHHH
Q 003487 562 GLEEKALRLRSNELKLERQLENSQSEISSY 591 (816)
Q Consensus 562 ~LEEk~l~LRS~ELKlerele~l~~E~~s~ 591 (816)
-|++|+.+.+.+.-|.+++.+....++..+
T Consensus 158 K~~~Kl~K~~~~~~k~~~~Y~~~v~~l~~~ 187 (240)
T cd07672 158 KLFAKLAQSKQNAEDADRLYMQNISVLDKI 187 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555445444444444333333
No 185
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=86.03 E-value=19 Score=43.21 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=10.9
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHH
Q 003487 498 SSLTDSYNQQRSVVNQLKSEMEKL 521 (816)
Q Consensus 498 saLTd~yNqQ~~~v~qLk~dmEqL 521 (816)
..|...+.+|-..+.+|+++++.|
T Consensus 568 ~~Lk~~~e~Ql~~L~~l~e~~~~l 591 (717)
T PF10168_consen 568 KLLKQQKEQQLKELQELQEERKSL 591 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444
No 186
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=85.94 E-value=38 Score=33.52 Aligned_cols=53 Identities=26% Similarity=0.390 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHH
Q 003487 508 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEV 560 (816)
Q Consensus 508 ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEV 560 (816)
..++.-|+.+++.+-.++..=...|.+++.|+++.-..|..=.+|...|.+=+
T Consensus 51 k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~ 103 (140)
T PF10473_consen 51 KAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLN 103 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555555555555555555555555544444443333
No 187
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=85.48 E-value=31 Score=39.98 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 003487 607 STIEALQEEKKMMQSKLRK 625 (816)
Q Consensus 607 sti~ALQEEKklLqskLRk 625 (816)
..+.+++|+.--||.+||.
T Consensus 428 ~~~~s~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 428 EALGSKDEKITDLQEQLRD 446 (493)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444555555566666664
No 188
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=85.25 E-value=12 Score=39.28 Aligned_cols=62 Identities=31% Similarity=0.476 Sum_probs=48.5
Q ss_pred HHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 003487 563 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 624 (816)
Q Consensus 563 LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLR 624 (816)
|||+...+.-+--|++.+++....+.+..++++.++.|.=.+++...+.|-||--.||.++.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 66666666666667777777777778888888888888888888888888888777777765
No 189
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=84.95 E-value=73 Score=37.27 Aligned_cols=36 Identities=31% Similarity=0.304 Sum_probs=16.4
Q ss_pred HHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 003487 587 EISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 623 (816)
Q Consensus 587 E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskL 623 (816)
-+.++..++.... ..+.-+...+.|.+-.+.|...+
T Consensus 301 ll~~~~~q~~~e~-~~~~~~~~~~~l~~~~~~i~~~~ 336 (650)
T TIGR03185 301 LLDSTKAQLQKEE-QSQQNQLTQEELEERDKELLESL 336 (650)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555332 23333444455544444444444
No 190
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=84.92 E-value=40 Score=35.49 Aligned_cols=11 Identities=18% Similarity=0.187 Sum_probs=6.5
Q ss_pred hhcCCCCccCC
Q 003487 625 KASGSGKSIDF 635 (816)
Q Consensus 625 ka~~~gk~~~~ 635 (816)
+++-.|.....
T Consensus 207 ~AP~dG~V~~~ 217 (331)
T PRK03598 207 IAPSDGTILTR 217 (331)
T ss_pred ECCCCeEEEec
Confidence 46777776433
No 191
>PRK10884 SH3 domain-containing protein; Provisional
Probab=84.77 E-value=9.4 Score=39.38 Aligned_cols=77 Identities=18% Similarity=0.295 Sum_probs=49.9
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003487 455 STKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES 534 (816)
Q Consensus 455 s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~ 534 (816)
.+.-.+.+..||+-|++|+.+--.+ -+++..+...+.+++++....+++|+.+-.+|+++++....+++.
T Consensus 88 ~p~~~~rlp~le~el~~l~~~l~~~----------~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTLTDKLNNI----------DNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHH----------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888888888887443322 233445555566666666677777888888887776666666666
Q ss_pred hHHHHHH
Q 003487 535 FRNEYAN 541 (816)
Q Consensus 535 l~aErda 541 (816)
+.+|.+.
T Consensus 158 l~~~~~~ 164 (206)
T PRK10884 158 ANLQLDD 164 (206)
T ss_pred HHHHHHH
Confidence 6555554
No 192
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=84.75 E-value=49 Score=36.25 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 003487 510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 541 (816)
Q Consensus 510 ~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErda 541 (816)
-+..|+..|..+++-++--++.+++|-.|+.+
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~ 109 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSA 109 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHH
Confidence 35677899999999999899999999888877
No 193
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=84.54 E-value=70 Score=35.30 Aligned_cols=92 Identities=20% Similarity=0.349 Sum_probs=71.2
Q ss_pred hhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHH
Q 003487 533 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL 612 (816)
Q Consensus 533 e~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~AL 612 (816)
..+.+|.+.-+-.+.+-.++...||-|.-..=+++.++...-=++++++.+++.++-.+.+++..+..+.-.++.-|.-+
T Consensus 161 ~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~ 240 (294)
T COG1340 161 KELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELREL 240 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34457777778888888888888888888888888888777777788888888888888888888877777777777666
Q ss_pred HHHHHHHHHHHH
Q 003487 613 QEEKKMMQSKLR 624 (816)
Q Consensus 613 QEEKklLqskLR 624 (816)
+..-+.|..+.+
T Consensus 241 ~k~ik~l~~~~~ 252 (294)
T COG1340 241 EKKIKALRAKEK 252 (294)
T ss_pred HHHHHHHHHHHH
Confidence 666666665555
No 194
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=84.47 E-value=37 Score=36.25 Aligned_cols=137 Identities=12% Similarity=0.182 Sum_probs=75.9
Q ss_pred HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHH
Q 003487 489 LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKAL 568 (816)
Q Consensus 489 l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l 568 (816)
|+-+++.+-..+...|..++ ...-.+-..++.++..+...|+..+..|+.|-.+...|..+-...-++.-.=...+.
T Consensus 89 l~~~v~~~l~~~~~~l~~~r---k~~~~~~~klqk~l~~~~~~leksKk~Y~~acke~E~A~~k~~ka~~d~~~tk~~~e 165 (252)
T cd07675 89 MGHRVYGELMRYSHDLKGER---KMHLQEGRKAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERLDNDTNATKSDVE 165 (252)
T ss_pred HHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccCHHHHH
Confidence 33334444444554444432 222255678889999999999999999999988888887774442222111111112
Q ss_pred HHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhh-----hhHHHHHHHH--HHHHH--HHHHHHhhcCCCC
Q 003487 569 RLRSNELKLERQLENSQSEISSYKKKISSLEKERQ-----DFQSTIEALQ--EEKKM--MQSKLRKASGSGK 631 (816)
Q Consensus 569 ~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~-----~lqsti~ALQ--EEKkl--LqskLRka~~~gk 631 (816)
++|..-=+-...++..+ ..|..+|..+-+.-. +|-.+++.|| ||+|. |..-+..++.-|+
T Consensus 166 K~k~~~~~~~q~~e~aK---n~Y~~~L~~~N~~q~k~Y~e~mP~vfd~lQ~leE~Ri~~l~e~~~~~~~~E~ 234 (252)
T cd07675 166 KAKQQLNLRTHMADESK---NEYAAQLQNFNGEQHKHFYIVIPQIYKQLQEMDERRTVKLSECYRGFADSER 234 (252)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222333222 567777777655443 4888899999 56643 3333444444333
No 195
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=84.46 E-value=5.2 Score=46.94 Aligned_cols=29 Identities=34% Similarity=0.377 Sum_probs=23.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhcCC
Q 003487 601 ERQDFQSTIEALQEEKKMMQSKLRKASGS 629 (816)
Q Consensus 601 eR~~lqsti~ALQEEKklLqskLRka~~~ 629 (816)
...--+.++++||.|-..|..+|+.+-.+
T Consensus 560 ~~~~k~~~l~~L~~En~~L~~~l~~le~~ 588 (722)
T PF05557_consen 560 AEQIKKSTLEALQAENEDLLARLRSLEEG 588 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 34445689999999999999999876543
No 196
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=84.42 E-value=28 Score=35.39 Aligned_cols=55 Identities=25% Similarity=0.329 Sum_probs=37.2
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHH
Q 003487 536 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKK 593 (816)
Q Consensus 536 ~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~r 593 (816)
+.|..+...-+..--.|-..|=.|||.|=-.+..+|+.. ++.|..++.|+-+|-+
T Consensus 126 ~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr~~T---erdL~~~r~e~~r~~r 180 (182)
T PF15035_consen 126 REEEENFNQYLSSEHSRLLSLWREVVALRRQFAELRTAT---ERDLSDMRAEFARTSR 180 (182)
T ss_pred HHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHc
Confidence 334444333334444455556699999999998888876 5788888888777654
No 197
>PF13166 AAA_13: AAA domain
Probab=84.27 E-value=88 Score=36.25 Aligned_cols=19 Identities=21% Similarity=0.151 Sum_probs=10.6
Q ss_pred CcccchHHHHHHHHHHhhc
Q 003487 785 ADEGDEVVERVLGWIMKLF 803 (816)
Q Consensus 785 ~DEgdeVveRvlgwimklf 803 (816)
.+-++..++..+.-+-++|
T Consensus 693 ~~~~~~~~~e~~~~~~~if 711 (712)
T PF13166_consen 693 IDMNPIDIEEYKKVFRKIF 711 (712)
T ss_pred cCCChhhHHHHHHHHHHHh
Confidence 4445556666666555554
No 198
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=84.26 E-value=92 Score=36.47 Aligned_cols=55 Identities=15% Similarity=0.156 Sum_probs=30.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHH
Q 003487 458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVN 512 (816)
Q Consensus 458 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~ 512 (816)
...++..|++-|+++..+.-.+...++..+.-.+.+..+-..+.+.|...|+..-
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~ 261 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLF 261 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 3345555665666655555555555555555555555555555666655555433
No 199
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=83.90 E-value=87 Score=35.93 Aligned_cols=99 Identities=21% Similarity=0.238 Sum_probs=56.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHhhHHHHHHHHHhhhHHHHHHHHHhhh----hccc-------c
Q 003487 704 RMIHNINALISELALEKEELVQALSSEL--AQSSKLKDLNNELSRKLEHQTQRLELLTAQNMAN----ENIS-------F 770 (816)
Q Consensus 704 RmI~NInaLisELa~Ereel~~AL~~es--~~~s~Lk~lN~ELsrKLE~qTQRLELltsq~ma~----e~~~-------a 770 (816)
+....++.=+.+-+.|+..++.+|+..- +.-.++..+-..|+..|=.-+..||.+++.+-+- |.+. +
T Consensus 355 ~~~s~~~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~~~~~ 434 (511)
T PF09787_consen 355 RQKSPLQLKLKEKESEIQKLRNQLSARASSSSWNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLKEEAS 434 (511)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHhhcc
Confidence 4444455556667788888888888765 2233444445555544444455677776655432 1111 1
Q ss_pred CCCCccccccccccCcccchHHHHHHHHHHhhcCCC
Q 003487 771 RQPDSASTHDHTAYADEGDEVVERVLGWIMKLFPGG 806 (816)
Q Consensus 771 ~~~ds~~~~~~~~~~DEgdeVveRvlgwimklfpgg 806 (816)
....++ -...|.+.+|.+-.| +-+.|+..|+.
T Consensus 435 ~~~~~~---~~~~~~~~~~d~~~r-~~~~~~~~~~d 466 (511)
T PF09787_consen 435 NNRPSS---ILMKYSNSEDDAESR-VPLLMKDSPHD 466 (511)
T ss_pred CCCCch---hhHhhccCCCchhhh-hhhhccCCCcc
Confidence 122222 234566677777777 67777777665
No 200
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=83.32 E-value=31 Score=40.03 Aligned_cols=107 Identities=23% Similarity=0.310 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHH-HHHHH
Q 003487 477 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAAD-ERAKI 555 (816)
Q Consensus 477 faLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~-ERak~ 555 (816)
.+|+|++..--++.|+-|+ |-++||+....-....+-++.... +||+....-|. -=++.
T Consensus 330 ~al~~A~~GhaR~lEqYad----LqEk~~~Ll~~Hr~i~egI~dVKk----------------aAakAg~kG~~~rF~~s 389 (488)
T PF06548_consen 330 DALQRAMEGHARMLEQYAD----LQEKHNDLLARHRRIMEGIEDVKK----------------AAAKAGVKGAESRFINS 389 (488)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHhccccchHHHHHH
Confidence 6899999999999999885 788999887766666655543333 34444433343 33789
Q ss_pred HHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 003487 556 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 624 (816)
Q Consensus 556 LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLR 624 (816)
||+|+-.|-.. + |||.+-++.|-++++.|+. +|-+|.|---. |..|||
T Consensus 390 laaEiSalr~e--r--------EkEr~~l~~eNk~L~~QLr----------DTAEAVqAagE-llvrl~ 437 (488)
T PF06548_consen 390 LAAEISALRAE--R--------EKERRFLKDENKGLQIQLR----------DTAEAVQAAGE-LLVRLR 437 (488)
T ss_pred HHHHHHHHHHH--H--------HHHHHHHHHHhHHHHHHHH----------hHHHHHHHHHH-HHHHHH
Confidence 99998655221 1 2333335566566655554 55555553222 345555
No 201
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.25 E-value=78 Score=39.27 Aligned_cols=31 Identities=42% Similarity=0.437 Sum_probs=18.7
Q ss_pred CCCCCccccCCccc---ccccccCCCCcccccCC
Q 003487 363 ASSGTLFEQTEPER---DSFMSSSSLNSMDVLGS 393 (816)
Q Consensus 363 a~~~t~~~~tEp~k---~~~l~SsS~N~~d~~gs 393 (816)
|-+|-+.|.+=|.- -+|..+.|.|+++.+-+
T Consensus 261 a~sGq~lP~tlP~E~Vpp~~r~~rs~~sis~~~p 294 (1118)
T KOG1029|consen 261 AKSGQPLPKTLPPELVPPSFRSSRSANSISGLEP 294 (1118)
T ss_pred HhcCCCCCCCCChhhcCcccccccCCCCcccccc
Confidence 34455566655554 46777777777765544
No 202
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=83.24 E-value=12 Score=44.45 Aligned_cols=19 Identities=21% Similarity=0.581 Sum_probs=9.4
Q ss_pred HHHHhhhHHHHHHHHHHhh
Q 003487 578 ERQLENSQSEISSYKKKIS 596 (816)
Q Consensus 578 erele~l~~E~~s~~rqls 596 (816)
+++|++...+++.+++++.
T Consensus 487 ~~~L~e~~~~ve~L~~~l~ 505 (652)
T COG2433 487 EKELEEKKKRVEELERKLA 505 (652)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555444
No 203
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=83.19 E-value=37 Score=31.13 Aligned_cols=31 Identities=16% Similarity=0.275 Sum_probs=13.7
Q ss_pred HHhhhHHHHHHHHHHhhhHHHhhhhhHHHHH
Q 003487 580 QLENSQSEISSYKKKISSLEKERQDFQSTIE 610 (816)
Q Consensus 580 ele~l~~E~~s~~rqlsslekeR~~lqsti~ 610 (816)
.+..+..++..++..+..+.+++..|..+.+
T Consensus 83 ~l~~~~~~~e~~r~~l~~a~~~~k~lekL~e 113 (141)
T TIGR02473 83 ELALLQQEVEAKRERLLEARRELKALEKLKE 113 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444443
No 204
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=83.09 E-value=15 Score=33.52 Aligned_cols=72 Identities=24% Similarity=0.282 Sum_probs=59.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 003487 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL 532 (816)
Q Consensus 457 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~l 532 (816)
.+-.++..||+-|--|+.||-.--.-.-.+++-.+.|-.||-.|....+.+...+.+|++ ++.++..++..+
T Consensus 21 ~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~----~E~~~~~~l~~~ 92 (96)
T PF08647_consen 21 KKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE----TEKEFVRKLKNL 92 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHh
Confidence 455789999999999999998877777788888999999999999999999999999988 555555555443
No 205
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=82.93 E-value=65 Score=33.71 Aligned_cols=58 Identities=14% Similarity=0.240 Sum_probs=39.3
Q ss_pred HHHHHHHHhhhH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 003487 488 ALSESLAAENSS-LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE 545 (816)
Q Consensus 488 ~l~EsLA~ENsa-LTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle 545 (816)
.+++.|.+|+.. |..=...+...+..++..|+.++..++....++...+..|..+-.+
T Consensus 78 ~la~~L~~ev~~~l~~f~~~~~k~~k~~e~~~~k~~K~~~~~~~~~~kaKk~y~~~cke 136 (233)
T cd07649 78 KFSSKLQSEVEKPLLNFRENFKKDMKKLDHHIADLRKQLASRYAAVEKARKALLERQKD 136 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666633 3333344566778888889999998888888888887777654333
No 206
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=82.70 E-value=1.3e+02 Score=36.93 Aligned_cols=126 Identities=21% Similarity=0.306 Sum_probs=69.0
Q ss_pred HHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhH----HHHH
Q 003487 492 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL----EEKA 567 (816)
Q Consensus 492 sLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~L----EEk~ 567 (816)
.|--||..|...++.-+..+..++.+|.--...-.-.+-.++.+..+-...|-+.+.+.+-.+.--.||-.. |+.+
T Consensus 496 kLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~ 575 (786)
T PF05483_consen 496 KLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENA 575 (786)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhh
Confidence 344556666666666666666666666554444334444455555555555555555555555555555431 1112
Q ss_pred HHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 003487 568 LRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 624 (816)
Q Consensus 568 l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLR 624 (816)
+-.-...++.++++.-+.-.+.-++++|+ .-...|+.||.|-|+|..++-
T Consensus 576 r~~e~e~~~k~kq~k~lenk~~~LrKqvE-------nk~K~ieeLqqeNk~LKKk~~ 625 (786)
T PF05483_consen 576 RSIECEILKKEKQMKILENKCNNLRKQVE-------NKNKNIEELQQENKALKKKIT 625 (786)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHH
Confidence 22222344555555555555555555555 334578888888888887765
No 207
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=82.57 E-value=1.3e+02 Score=38.23 Aligned_cols=169 Identities=22% Similarity=0.341 Sum_probs=89.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHHHHHHhhhHHHHHH
Q 003487 460 EDFAALEQHIEDLTQEKFALQRS-----------------------------------LEASRALSESLAAENSSLTDSY 504 (816)
Q Consensus 460 ~~faaLqqhIeDLT~EKfaLqR~-----------------------------------L~~s~~l~EsLA~ENsaLTd~y 504 (816)
.+..-|+--+.-|-.||-.+++. |+.-..-.+.--.|-+++--+|
T Consensus 272 ~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky 351 (1200)
T KOG0964|consen 272 CEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKY 351 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 46677777777777777666554 1111122233345566677788
Q ss_pred HHhhHHHHHHHHHHHHHHHHHH---HHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHh
Q 003487 505 NQQRSVVNQLKSEMEKLQEEIK---VQLVELESF----------RNEYANVRLECNAADERAKILASEVIGLEEKALRLR 571 (816)
Q Consensus 505 NqQ~~~v~qLk~dmEqLq~Ei~---aQ~~~le~l----------~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LR 571 (816)
|.+...-+.++..+..|++... +-...-.+| +.|+-..-...+.-.|+-..|..|.-.||...-..=
T Consensus 352 ~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~ 431 (1200)
T KOG0964|consen 352 NSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKL 431 (1200)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888877777766322 111122222 333334445556666677777777766654433221
Q ss_pred hhhhhhHHHHhhhHHHHHH-------HHHHhhhHHHhh-------hhhHHHHHHHHHHHHHHHHHHHhhcC
Q 003487 572 SNELKLERQLENSQSEISS-------YKKKISSLEKER-------QDFQSTIEALQEEKKMMQSKLRKASG 628 (816)
Q Consensus 572 S~ELKlerele~l~~E~~s-------~~rqlsslekeR-------~~lqsti~ALQEEKklLqskLRka~~ 628 (816)
..-=+++..+.....+++. .++++..+.-.| .-|++.|+++.+.-..-+..|+.+..
T Consensus 432 e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~ 502 (1200)
T KOG0964|consen 432 EEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRATMN 502 (1200)
T ss_pred HHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1111223333322222222 233333333333 34567777777777777777775433
No 208
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=82.54 E-value=54 Score=32.52 Aligned_cols=33 Identities=30% Similarity=0.309 Sum_probs=14.9
Q ss_pred HHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHH
Q 003487 559 EVIGLEEKALRLRSNELKLERQLENSQSEISSYKKK 594 (816)
Q Consensus 559 EVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rq 594 (816)
|...+|.|+..+ .-|+..++.+++.+|++.+-.
T Consensus 121 e~~~~~~ki~e~---~~ki~~ei~~lr~~iE~~K~~ 153 (177)
T PF07798_consen 121 EQAKQELKIQEL---NNKIDTEIANLRTEIESLKWD 153 (177)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444333 234445555555555544433
No 209
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=82.49 E-value=79 Score=39.93 Aligned_cols=88 Identities=23% Similarity=0.295 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 003487 467 QHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC 546 (816)
Q Consensus 467 qhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~ 546 (816)
-.|.|++.|=--|-|.|.++|+=.==.-. -++|=+.-...++...++++|++||++-...+..+.+=|..-...+
T Consensus 404 ~llKd~~~EIerLK~dl~AaReKnGvyis-----ee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~ 478 (1041)
T KOG0243|consen 404 TLLKDLYEEIERLKRDLAAAREKNGVYIS-----EERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIK 478 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhCceEec-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 57899999999999999998873321111 1344444444555555555555555555555566655555444444
Q ss_pred hhHHHHHHHHHHH
Q 003487 547 NAADERAKILASE 559 (816)
Q Consensus 547 ~aA~ERak~LAaE 559 (816)
..-.++-..|-..
T Consensus 479 ~~l~~~~~~~k~~ 491 (1041)
T KOG0243|consen 479 ELLKEEKEKLKSK 491 (1041)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 210
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=82.42 E-value=17 Score=31.89 Aligned_cols=52 Identities=23% Similarity=0.226 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 003487 478 ALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQL 529 (816)
Q Consensus 478 aLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~ 529 (816)
.+.|-++........|..|++....+-=.-......|+.+++.|+.|++.++
T Consensus 16 ~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 16 SLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456677777888888888888887777777788888888888888865543
No 211
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=82.37 E-value=8.8 Score=43.27 Aligned_cols=45 Identities=16% Similarity=0.148 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Q 003487 584 SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 628 (816)
Q Consensus 584 l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRka~~ 628 (816)
+..-...+..++..+..++.++...+..++++...|+.+|.++..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 129 WFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333334444555555555555666666666777777777766554
No 212
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.24 E-value=84 Score=37.68 Aligned_cols=133 Identities=20% Similarity=0.310 Sum_probs=81.4
Q ss_pred HHHHHHHHhhhHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHH-------
Q 003487 488 ALSESLAAENSSLTDSYNQQRSVV-NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASE------- 559 (816)
Q Consensus 488 ~l~EsLA~ENsaLTd~yNqQ~~~v-~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaE------- 559 (816)
+--+-|-+--+-+-++|=...+.| .++++-+.+|+..++.|+-.+.-...||.- ..|||-.||.-
T Consensus 559 E~~~lL~~a~~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~-------i~e~a~~La~R~eea~e~ 631 (741)
T KOG4460|consen 559 ECLQLLSRATQVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKS-------LREMAERLADRYEEAKEK 631 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Confidence 333444455555666776666555 578888999999999999988888888765 34444444432
Q ss_pred HHhHHHHHHHHhhh-----------hhhhHHHHhhhHHHHHHHHHHhhhH----HHhhhhhHHHHHHHH--------HHH
Q 003487 560 VIGLEEKALRLRSN-----------ELKLERQLENSQSEISSYKKKISSL----EKERQDFQSTIEALQ--------EEK 616 (816)
Q Consensus 560 VV~LEEk~l~LRS~-----------ELKlerele~l~~E~~s~~rqlssl----ekeR~~lqsti~ALQ--------EEK 616 (816)
--.|+.+|.+||+. |+.-.+|++-+..+.+.+...++-+ .|.|+|+...+.||| .+.
T Consensus 632 qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~l~~~Q~ 711 (741)
T KOG4460|consen 632 QEDLMNRMKKLLHSFHSELPVLSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPTYILSAYQR 711 (741)
T ss_pred HHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHH
Confidence 23578888888763 3333444444444444443333332 357778877777777 233
Q ss_pred HHHHHHHHhhc
Q 003487 617 KMMQSKLRKAS 627 (816)
Q Consensus 617 klLqskLRka~ 627 (816)
+-+|+-|-++.
T Consensus 712 ~~iqsiL~~L~ 722 (741)
T KOG4460|consen 712 KCIQSILKELG 722 (741)
T ss_pred HHHHHHHHHHH
Confidence 55666665543
No 213
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=81.91 E-value=7.3 Score=37.80 Aligned_cols=67 Identities=24% Similarity=0.393 Sum_probs=39.7
Q ss_pred HHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 003487 553 AKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGK 631 (816)
Q Consensus 553 ak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRka~~~gk 631 (816)
-..|-.|+..|.+++..++.. +..+..|+..+.+.+.. .+|+..|+.|++|.+.|..||..+-.+..
T Consensus 74 l~~ld~ei~~L~~el~~l~~~-------~k~l~~eL~~L~~~~t~-----~el~~~i~~l~~e~~~l~~kL~~l~~~~~ 140 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKE-------VKSLEAELASLSSEPTN-----EELREEIEELEEEIEELEEKLEKLRSGSK 140 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 444555555555555555433 33444444444444442 25777888888888888888887655333
No 214
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=81.90 E-value=1.3e+02 Score=36.64 Aligned_cols=99 Identities=20% Similarity=0.295 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHH-------HHHHHhhhhhhhHHHHhhhHH
Q 003487 514 LKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE-------KALRLRSNELKLERQLENSQS 586 (816)
Q Consensus 514 Lk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEE-------k~l~LRS~ELKlerele~l~~ 586 (816)
.+.+.+||...........+.+..||...|-+.-++-.|=..|-.+--.||| ++--||++-+ |.|+++.
T Consensus 53 ~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQv----efE~~Kh 128 (717)
T PF09730_consen 53 VQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQV----EFEGLKH 128 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHH----HHHHHHH
Confidence 3334444444444444444444555555555555555565555555555554 5556666655 4456666
Q ss_pred HHHHHH-------HHhhhHHHhh----hhhHHHHHHHHHHH
Q 003487 587 EISSYK-------KKISSLEKER----QDFQSTIEALQEEK 616 (816)
Q Consensus 587 E~~s~~-------rqlsslekeR----~~lqsti~ALQEEK 616 (816)
||++++ .|++-+.+=| ..|...+++||.|+
T Consensus 129 ei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~ER 169 (717)
T PF09730_consen 129 EIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSER 169 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665554 4555444333 24677888898766
No 215
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=81.60 E-value=71 Score=33.21 Aligned_cols=131 Identities=13% Similarity=0.123 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH------------hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 003487 477 FALQRSLEASRALSESLAAENSSLTDSYNQ------------QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL 544 (816)
Q Consensus 477 faLqR~L~~s~~l~EsLA~ENsaLTd~yNq------------Q~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArl 544 (816)
..|..++..-..-+|.+|.-+..|...-.. |...-..++..+++++.-+......+...+..|..+--
T Consensus 58 Gtl~~aw~~~~~e~e~~a~~H~~la~~L~~ev~~~l~~~~~~~~k~rK~~~~~~~k~qk~~~~~~~~~~k~kk~y~~~~k 137 (239)
T cd07658 58 GTLSSAWTCVAEEMESEADIHRNLGSALTEEAIKPLRQVLDEQHKTRKPVENEVDKAAKLLTDWRSEQIKVKKKLHGLAR 137 (239)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555556666666555554432 22233445555555666555555566666666666555
Q ss_pred hhhhHHHHHH--------------------HHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhh
Q 003487 545 ECNAADERAK--------------------ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQD 604 (816)
Q Consensus 545 e~~aA~ERak--------------------~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~ 604 (816)
+...|..+.. .-..|+--|+.|+.+.+....|.+.+.......+..++..-. .+
T Consensus 138 E~e~a~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~Kl~~k~~ka~~~~~k~e~~y~~~~~~l~~~~~~~~------~~ 211 (239)
T cd07658 138 ENEKLQDQVEDNKQSCTKQKMLNKLKKSAEVQDKEDEKLEAKRKKGEESRLKAENEYYTCCVRLERLRLEWE------SA 211 (239)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH
Confidence 5555544331 122455556666666655555555555554444444443333 34
Q ss_pred hHHHHHHHH
Q 003487 605 FQSTIEALQ 613 (816)
Q Consensus 605 lqsti~ALQ 613 (816)
|..+++.+|
T Consensus 212 ~~~~~~~~Q 220 (239)
T cd07658 212 LRKGLNQYE 220 (239)
T ss_pred HHHHHHHHH
Confidence 667777777
No 216
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=81.20 E-value=11 Score=35.15 Aligned_cols=81 Identities=22% Similarity=0.337 Sum_probs=52.3
Q ss_pred chhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 003487 458 HNEDFAALEQHIEDLTQEKFA-----------LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 526 (816)
Q Consensus 458 ~~~~faaLqqhIeDLT~EKfa-----------LqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~ 526 (816)
..-||++||.||..+|-=++. +.+-+.=+|=..|-|-.-.+-|.+........+.++..+.++|+..++
T Consensus 25 ~~~Di~~Lq~~i~~vtf~~l~~e~~~~~~dp~~~klfrLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~ 104 (118)
T PF13815_consen 25 RELDIDTLQENIENVTFCDLENEDCQHFVDPNFLKLFRLAQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLK 104 (118)
T ss_pred hccCHHHHHHHHHhcceeccChhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999977643321 233444455556666666666666666666666667777777777766
Q ss_pred HHHHHhhhhHHH
Q 003487 527 VQLVELESFRNE 538 (816)
Q Consensus 527 aQ~~~le~l~aE 538 (816)
.+..++..++.|
T Consensus 105 ~~~~~~k~lk~E 116 (118)
T PF13815_consen 105 KQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHh
Confidence 666666666655
No 217
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=81.07 E-value=59 Score=35.25 Aligned_cols=69 Identities=25% Similarity=0.383 Sum_probs=59.0
Q ss_pred HHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHH
Q 003487 553 AKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS 621 (816)
Q Consensus 553 ak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqs 621 (816)
.+.+..+|-.++..|-.+.++|-.|+..++.-+.|+++.++++.+|.+=|=-.....+.|.+|-+.|..
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~ 239 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYE 239 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 345667777888888888888888888888889999999999999999999999999999999876654
No 218
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=81.04 E-value=53 Score=31.39 Aligned_cols=74 Identities=20% Similarity=0.346 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhh
Q 003487 510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLEN 583 (816)
Q Consensus 510 ~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~ 583 (816)
.-..|...+.+++.++......++.++...+.+..++..+.++-+.|-.++-.++.....++-+--|+...+..
T Consensus 53 ~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~ 126 (151)
T PF11559_consen 53 QREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQ 126 (151)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555555555555555666666666666666666555555544444444433
No 219
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=80.48 E-value=96 Score=34.06 Aligned_cols=22 Identities=9% Similarity=0.213 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC
Q 003487 607 STIEALQEEKKMMQSKLRKASG 628 (816)
Q Consensus 607 sti~ALQEEKklLqskLRka~~ 628 (816)
..+.+++-+.+.++.+|.++-.
T Consensus 227 ~~~~~~~~~l~~~~~~l~~~~~ 248 (421)
T TIGR03794 227 KELETVEARIKEARYEIEELEN 248 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666777777765433
No 220
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=80.45 E-value=86 Score=38.13 Aligned_cols=73 Identities=21% Similarity=0.331 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHH-------HHHHHHHHHHHHHH
Q 003487 552 RAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE-------ALQEEKKMMQSKLR 624 (816)
Q Consensus 552 Rak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~-------ALQEEKklLqskLR 624 (816)
+...+..|.-.+.-.+-.++..-+.+.+.++-|+.+.+.+.+++.-++..=.++...|+ .||||-..|.-+|.
T Consensus 539 ~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle 618 (698)
T KOG0978|consen 539 NESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLE 618 (698)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444445555555544444444443334333333 34455555554444
No 221
>PRK10722 hypothetical protein; Provisional
Probab=79.92 E-value=6 Score=42.30 Aligned_cols=51 Identities=29% Similarity=0.289 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhhhHHHHHHHH
Q 003487 711 ALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQ 761 (816)
Q Consensus 711 aLisELa~Ereel~~AL~~es~~~s~Lk~lN~ELsrKLE~qTQRLELltsq 761 (816)
.|+..|++||.+--+..-+..++...|+.-+++|.++|+.++.+||-+|.=
T Consensus 155 ~l~l~LaeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdI 205 (247)
T PRK10722 155 ALQLALAEERQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENLTDI 205 (247)
T ss_pred HHHHhHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888887766667777899999999999999999999999999863
No 222
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=79.81 E-value=9.7 Score=33.08 Aligned_cols=53 Identities=23% Similarity=0.315 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHH---hhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhh
Q 003487 520 KLQEEIKVQLVE---LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 572 (816)
Q Consensus 520 qLq~Ei~aQ~~~---le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS 572 (816)
-|+.||+|.... |..+++.+-++.....+|..|-+.|-.||-.|++++-.+|+
T Consensus 5 aL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 5 ALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356666666553 34457777788888889999999999999999988887775
No 223
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.81 E-value=1.5e+02 Score=35.81 Aligned_cols=119 Identities=27% Similarity=0.376 Sum_probs=74.9
Q ss_pred HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--------------HHHHHHHhhhhhhHHHHHHHH
Q 003487 491 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF--------------RNEYANVRLECNAADERAKIL 556 (816)
Q Consensus 491 EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l--------------~aErdaArle~~aA~ERak~L 556 (816)
|+|-.|-.+=-.-||++ |-.|+-++.|+++++.--..+++.+ ..+|-+.|-+.-+--.|-.+|
T Consensus 92 esLLqESaakE~~yl~k---I~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~Rl 168 (772)
T KOG0999|consen 92 ESLLQESAAKEEYYLQK---ILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARL 168 (772)
T ss_pred HHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666667765 4445556666666555444444433 556777777788888888888
Q ss_pred HHHHHhHHHH-------HHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHH-----Hhh------hhhHHHHHHHHHHH
Q 003487 557 ASEVIGLEEK-------ALRLRSNELKLERQLENSQSEISSYKKKISSLE-----KER------QDFQSTIEALQEEK 616 (816)
Q Consensus 557 AaEVV~LEEk-------~l~LRS~ELKlerele~l~~E~~s~~rqlssle-----keR------~~lqsti~ALQEEK 616 (816)
-.|--.|||. +-.||.+.+ |.|+++.||.+++..++-+- ..| ..|.-.+++||-|+
T Consensus 169 lseYSELEEENIsLQKqVs~LR~sQV----EyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~ER 242 (772)
T KOG0999|consen 169 LSEYSELEEENISLQKQVSNLRQSQV----EYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQER 242 (772)
T ss_pred HHHHHHHHHhcchHHHHHHHHhhhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 8888777775 445555544 67788999888876654321 111 12556677777665
No 224
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=79.74 E-value=5.7 Score=40.75 Aligned_cols=50 Identities=24% Similarity=0.288 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhhhHHHHHHH
Q 003487 711 ALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTA 760 (816)
Q Consensus 711 aLisELa~Ereel~~AL~~es~~~s~Lk~lN~ELsrKLE~qTQRLELlts 760 (816)
.|.-.|++||.+-.+.-.+.-.++..|+.-+..|...|+.++..||-+|-
T Consensus 109 ~lql~L~eEr~Ry~rLQqssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTD 158 (179)
T PF13942_consen 109 VLQLQLSEERARYQRLQQSSDSELDALRQQQQRLQYQLDTTTRKLENLTD 158 (179)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 46778999999998888888999999999999999999999999999985
No 225
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=79.42 E-value=84 Score=32.73 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=5.2
Q ss_pred hHHHHHHHHHHHH
Q 003487 461 DFAALEQHIEDLT 473 (816)
Q Consensus 461 ~faaLqqhIeDLT 473 (816)
++..++..++.+.
T Consensus 81 ~l~~a~a~l~~~~ 93 (334)
T TIGR00998 81 ALAKAEANLAALV 93 (334)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444333
No 226
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=79.04 E-value=11 Score=43.33 Aligned_cols=74 Identities=24% Similarity=0.363 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhh-hHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 003487 551 ERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS-SLEKERQDFQSTIEALQEEKKMMQSKLR 624 (816)
Q Consensus 551 ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqls-slekeR~~lqsti~ALQEEKklLqskLR 624 (816)
+=-+.|.++|-.|+.++..+.++-=+|.+|-+.|+..-...+.++. +++.+|++++...+.|++|...|+..|.
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~ 133 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLID 133 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888899999999988888777777787788776666666665 4557788888888888888766655554
No 227
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=79.01 E-value=1.7e+02 Score=37.32 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003487 462 FAALEQHIEDLTQEKFALQRSLE 484 (816)
Q Consensus 462 faaLqqhIeDLT~EKfaLqR~L~ 484 (816)
-+.|++.|++..+++-.+++.|+
T Consensus 67 ~~~~~~~i~~ap~~~~~~~~~l~ 89 (1109)
T PRK10929 67 AKQYQQVIDNFPKLSAELRQQLN 89 (1109)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Confidence 34444455555555555544444
No 228
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=78.93 E-value=1.3e+02 Score=34.83 Aligned_cols=57 Identities=9% Similarity=0.163 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 003487 484 EASRALSESLAAENSSLTDSYNQQ--RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 540 (816)
Q Consensus 484 ~~s~~l~EsLA~ENsaLTd~yNqQ--~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErd 540 (816)
+-++++++.|-.+=+.+...-|++ ...|.-.+.++++-++.+..-+.+|..|+....
T Consensus 215 edA~~ia~aLL~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~g 273 (434)
T PRK15178 215 KQAEFFAQRILSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQK 273 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 356777777777777777777764 456777777888888777777777777766553
No 229
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=78.84 E-value=12 Score=44.38 Aligned_cols=79 Identities=16% Similarity=0.297 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHH
Q 003487 475 EKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA 553 (816)
Q Consensus 475 EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERa 553 (816)
+-|+..|.+..+.++-+++.-|--.|--+--+..+.++++.-++|.|+++|-....+|++++.|..+||-...++.++-
T Consensus 73 ~~~s~~r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n 151 (907)
T KOG2264|consen 73 SGYSIGRILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETN 151 (907)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 4455666666667777777666666666666666778888888888888888888899999999999888777777764
No 230
>PRK10698 phage shock protein PspA; Provisional
Probab=78.75 E-value=87 Score=32.53 Aligned_cols=31 Identities=6% Similarity=0.067 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003487 461 DFAALEQHIEDLTQEKFALQRSLEASRALSE 491 (816)
Q Consensus 461 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~E 491 (816)
-..+|.|.|.||-..--.+.+++++..+.-.
T Consensus 25 P~k~l~q~i~em~~~l~~~r~alA~~~A~~k 55 (222)
T PRK10698 25 PQKLVRLMIQEMEDTLVEVRSTSARALAEKK 55 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999988888777766554433
No 231
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=78.56 E-value=11 Score=33.51 Aligned_cols=66 Identities=17% Similarity=0.318 Sum_probs=45.5
Q ss_pred HHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHhhhh-HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHH
Q 003487 501 TDSYNQQRSVVNQLKSEMEK-LQEEIKVQLVELESF-RNEYANVRLECNAADERAKILASEVIGLEEK 566 (816)
Q Consensus 501 Td~yNqQ~~~v~qLk~dmEq-Lq~Ei~aQ~~~le~l-~aErdaArle~~aA~ERak~LAaEVV~LEEk 566 (816)
.+..++--...+.+++++++ ++..++..+..+.-+ +.|.|+.+.....+.+|-..|.+.|..||+|
T Consensus 12 ~~~~~~~~~~~~~~~~e~e~~~r~~l~~~l~kldlVtREEFd~q~~~L~~~r~kl~~LEarl~~LE~~ 79 (79)
T PF04380_consen 12 AKQISEALPAAQGPREEIEKNIRARLQSALSKLDLVTREEFDAQKAVLARTREKLEALEARLAALEAQ 79 (79)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444444444556666654 344455555555555 8999999999999999999999999888864
No 232
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=78.28 E-value=1e+02 Score=33.06 Aligned_cols=96 Identities=21% Similarity=0.246 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHH-------HHHHHhHHHHHHHHhhhhhhhHHHHhhh
Q 003487 512 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL-------ASEVIGLEEKALRLRSNELKLERQLENS 584 (816)
Q Consensus 512 ~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~L-------AaEVV~LEEk~l~LRS~ELKlerele~l 584 (816)
.++...++++|.-.....-.++.-+..|..+-.+...|..|-... ..+|--+.+++. +-...+
T Consensus 115 K~~e~~~~KaQK~~~k~~k~v~~sKk~Ye~~Cke~~~A~~~~~~a~~d~~~s~~q~eK~~~k~~----------k~~~~~ 184 (258)
T cd07680 115 KEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEEKLAMTREANSKAEQSVTPEQQKKLQDKVD----------KCKQDV 184 (258)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHH----------HHHHHH
Confidence 346778888888877888888888888887777777777653322 223322222222 222223
Q ss_pred HHHHHHHHHHhhhHHHhhh----hhHHHHHHHH--HHHH
Q 003487 585 QSEISSYKKKISSLEKERQ----DFQSTIEALQ--EEKK 617 (816)
Q Consensus 585 ~~E~~s~~rqlsslekeR~----~lqsti~ALQ--EEKk 617 (816)
..-...|+..|..|.+.+. ++-.+++.+| ||++
T Consensus 185 ~~sk~~Y~~~l~~ln~~~~~y~~~m~~vfd~~Q~~Ee~R 223 (258)
T cd07680 185 QKTQEKYEKVLDDVGKTTPQYMENMEQVFEQCQQFEEKR 223 (258)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333678888888888876 4677888998 5554
No 233
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=78.22 E-value=20 Score=31.82 Aligned_cols=47 Identities=23% Similarity=0.244 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 003487 484 EASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLV 530 (816)
Q Consensus 484 ~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~ 530 (816)
+++-+....|-.||+.|-...++....-.+|+.+.++|+++..+...
T Consensus 14 ~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~ 60 (72)
T PF06005_consen 14 QQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQE 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555555555555555554444433
No 234
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=77.95 E-value=6.3 Score=36.32 Aligned_cols=44 Identities=27% Similarity=0.365 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHH
Q 003487 510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA 553 (816)
Q Consensus 510 ~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERa 553 (816)
.|++|..++..|...+..-..+...+++.-++|+.|+..|.+|-
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~Ri 68 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRL 68 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444444444444444444455667777778888888888874
No 235
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=77.73 E-value=1.9e+02 Score=36.17 Aligned_cols=108 Identities=23% Similarity=0.359 Sum_probs=56.6
Q ss_pred HhhhHHHHHHHHhhHHHHHH----HHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhH-------
Q 003487 495 AENSSLTDSYNQQRSVVNQL----KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL------- 563 (816)
Q Consensus 495 ~ENsaLTd~yNqQ~~~v~qL----k~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~L------- 563 (816)
.||+.|.++.-+.-.++.+- ++++.|.|.++..+--.+.+++.-||+-. +=-+.|--|+..|
T Consensus 980 ~e~sdLnekLr~rL~q~eaeR~~~reqlrQ~Q~Q~sqYnqvl~~LksS~~~K~-------~~l~El~qEl~d~GV~AD~g 1052 (1480)
T COG3096 980 SENSDLNEKLRQRLEQAEAERTRAREQLRQHQAQLSQYNQVLASLKSSYDTKK-------ELLNELQQELQDIGVRADSG 1052 (1480)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-------HHHHHHHHHHHHhCCCcCcc
Confidence 56777666554433333221 23344444445555556666666666533 3333344444322
Q ss_pred -HHHHH-----------HHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHH
Q 003487 564 -EEKAL-----------RLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTI 609 (816)
Q Consensus 564 -EEk~l-----------~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti 609 (816)
|||+. .-|+-.-.+||++--...|+..+.+++..+|+|-+.++..+
T Consensus 1053 AeeRA~~RRDELh~~Lst~RsRr~~~EkqlT~~E~E~~~L~~~~rK~ErDY~~~Re~V 1110 (1480)
T COG3096 1053 AEERARIRRDELHAQLSTNRSRRNQLEKQLTFCEAEMDNLTRKLRKLERDYFEMREQV 1110 (1480)
T ss_pred hHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44444 33333334566666666667777777776666666655543
No 236
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=77.71 E-value=45 Score=28.68 Aligned_cols=76 Identities=21% Similarity=0.299 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHH
Q 003487 481 RSLEASRALSESLAAENSSLTDSYNQQR-----SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 555 (816)
Q Consensus 481 R~L~~s~~l~EsLA~ENsaLTd~yNqQ~-----~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~ 555 (816)
+.++....-.+.|-..-..+...++... ..+.....-+..|...|..+...++.+..+...++..+.+|.-+.|.
T Consensus 12 ~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~ 91 (123)
T PF02050_consen 12 QELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKK 91 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555555 66666777777777777777777777777777777777777766666
Q ss_pred H
Q 003487 556 L 556 (816)
Q Consensus 556 L 556 (816)
+
T Consensus 92 ~ 92 (123)
T PF02050_consen 92 L 92 (123)
T ss_dssp H
T ss_pred H
Confidence 5
No 237
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=77.70 E-value=2.1e+02 Score=36.59 Aligned_cols=32 Identities=19% Similarity=0.348 Sum_probs=23.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003487 456 TKHNEDFAALEQHIEDLTQEKFALQRSLEASR 487 (816)
Q Consensus 456 ~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~ 487 (816)
.+-+++++++.+-|..|++++-.-.|.+....
T Consensus 230 ~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k 261 (1141)
T KOG0018|consen 230 EKANDELSRLNAEIPKLKERMDKKEREIRVRK 261 (1141)
T ss_pred hhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHH
Confidence 34567888888888888887777777666555
No 238
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=77.38 E-value=1.1e+02 Score=33.88 Aligned_cols=18 Identities=28% Similarity=0.553 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 003487 460 EDFAALEQHIEDLTQEKF 477 (816)
Q Consensus 460 ~~faaLqqhIeDLT~EKf 477 (816)
..+.-||+.+|-|..||-
T Consensus 18 qKIqelE~QldkLkKE~q 35 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQ 35 (307)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345667777777777763
No 239
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.34 E-value=1.6e+02 Score=36.73 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHH
Q 003487 715 ELALEKEELVQALSSELAQSSKLKDLNNELSRKLE 749 (816)
Q Consensus 715 ELa~Ereel~~AL~~es~~~s~Lk~lN~ELsrKLE 749 (816)
...-|++++.=.|.+-..++..||..+.+|.+.-|
T Consensus 908 s~kqeqee~~v~~~~~~~~i~alk~~l~dL~q~~e 942 (970)
T KOG0946|consen 908 SNKQEQEELLVLLADQKEKIQALKEALEDLNQPVE 942 (970)
T ss_pred chhhhHHHHHHHHhhHHHHHHHHHHHHHHhCCChh
Confidence 34567778777777888888888877777765553
No 240
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=77.20 E-value=55 Score=40.10 Aligned_cols=60 Identities=28% Similarity=0.312 Sum_probs=48.7
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHh
Q 003487 540 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKE 601 (816)
Q Consensus 540 daArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlssleke 601 (816)
+-+-.+.-+|-|+.-.|-.|+-.+-.++.+++-.+=|+.+..|.|+.++..+++ +.++++
T Consensus 205 qlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~--~~~~~~ 264 (916)
T KOG0249|consen 205 QLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR--SSLEKE 264 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HHHhhh
Confidence 445567778888888999999999999999988888999999999999998885 444443
No 241
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=76.77 E-value=70 Score=33.81 Aligned_cols=44 Identities=27% Similarity=0.403 Sum_probs=27.1
Q ss_pred HHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 003487 580 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 623 (816)
Q Consensus 580 ele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskL 623 (816)
+|..++.+|..++.-+..++.||...+..|..+++|.+-|...+
T Consensus 54 eLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~i 97 (230)
T PF10146_consen 54 ELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEI 97 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666666666666666666666666666665555443
No 242
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=76.75 E-value=27 Score=34.02 Aligned_cols=63 Identities=32% Similarity=0.390 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhh--hhHHHHHHHHHHHHHhHHHHHHHHhh
Q 003487 510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC--NAADERAKILASEVIGLEEKALRLRS 572 (816)
Q Consensus 510 ~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~--~aA~ERak~LAaEVV~LEEk~l~LRS 572 (816)
.+.++..++.+|++++......+..+.+|.......- .++...-..|-.|+-.|++|+..||+
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555555555555544433 44555666677777777777777776
No 243
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=76.50 E-value=90 Score=32.11 Aligned_cols=170 Identities=18% Similarity=0.253 Sum_probs=103.6
Q ss_pred cCCchhhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhhHHHHH------------HHHhhHHHHHHHH
Q 003487 455 STKHNEDFAALEQHIEDLTQEKF------ALQRSLEASRALSESLAAENSSLTDS------------YNQQRSVVNQLKS 516 (816)
Q Consensus 455 s~~~~~~faaLqqhIeDLT~EKf------aLqR~L~~s~~l~EsLA~ENsaLTd~------------yNqQ~~~v~qLk~ 516 (816)
++.+..-...|++.++-|.+-+- .|+..++.+=.....|-.+=..+... .++.-..+.+...
T Consensus 13 ~~~~~~~i~~l~~al~~L~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~ 92 (240)
T PF12795_consen 13 EPEQKALIQDLQQALSFLDEIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQA 92 (240)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHH
Confidence 44555667777777666655443 45555655555555555544444332 3344445555556
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhH---------HHHHHHHhhhhhhhHHHHhhhHHH
Q 003487 517 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL---------EEKALRLRSNELKLERQLENSQSE 587 (816)
Q Consensus 517 dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~L---------EEk~l~LRS~ELKlerele~l~~E 587 (816)
++..++..+...-..+..+..=-.+|+....++..|-..+....-.+ +.+...|....--++.++.-+..+
T Consensus 93 ~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~e 172 (240)
T PF12795_consen 93 QLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQE 172 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666655555566665556677888888888888888887665 555555555555555555556666
Q ss_pred HHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 003487 588 ISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 624 (816)
Q Consensus 588 ~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLR 624 (816)
..+......-+.+.|.-+..-++.++.+-..||..|-
T Consensus 173 l~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln 209 (240)
T PF12795_consen 173 LLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLN 209 (240)
T ss_pred HHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555566666666677777777777666553
No 244
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=76.43 E-value=95 Score=31.76 Aligned_cols=41 Identities=5% Similarity=0.189 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHH
Q 003487 514 LKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK 554 (816)
Q Consensus 514 Lk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak 554 (816)
+++++.+.++.+..+.+.-..+..+++.++..+..=..||+
T Consensus 36 m~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~ 76 (219)
T TIGR02977 36 MEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAE 76 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555444555555555555544444443
No 245
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=76.03 E-value=91 Score=37.54 Aligned_cols=25 Identities=28% Similarity=0.545 Sum_probs=10.0
Q ss_pred hHHHHhhhHHHHHHHHHHhhhHHHh
Q 003487 577 LERQLENSQSEISSYKKKISSLEKE 601 (816)
Q Consensus 577 lerele~l~~E~~s~~rqlssleke 601 (816)
++.+++.++.+...++.++..+.++
T Consensus 246 l~~~l~~l~~~~~~l~~~~~~~~~~ 270 (670)
T KOG0239|consen 246 LQQELEELKAELKELNDQVSLLTRE 270 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433333
No 246
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=75.96 E-value=11 Score=32.47 Aligned_cols=44 Identities=23% Similarity=0.391 Sum_probs=26.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHH
Q 003487 503 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA 553 (816)
Q Consensus 503 ~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERa 553 (816)
+.++....|.+|..++.+|.++|.+ ++.|..+|+.|+..|.+|-
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~-------lr~~v~~ak~EAaRAN~Rl 47 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNA-------LRADVQAAKEEAARANQRL 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 4455556666777777777766544 4455556666666666664
No 247
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.96 E-value=1.3e+02 Score=32.94 Aligned_cols=79 Identities=19% Similarity=0.294 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 003487 462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 541 (816)
Q Consensus 462 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErda 541 (816)
...=+.-|.+++.++-.+|-.|+.=..=++.+-..-..+..++++-...+.+|+.+++.+++.|..+.-.| .+|.+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l----~~raR 108 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELL----KKRAR 108 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 55566788999999999998888888878888777778888888888888888888888877776554433 45555
Q ss_pred Hhh
Q 003487 542 VRL 544 (816)
Q Consensus 542 Arl 544 (816)
|-+
T Consensus 109 Amq 111 (265)
T COG3883 109 AMQ 111 (265)
T ss_pred HHH
Confidence 543
No 248
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=75.60 E-value=52 Score=30.08 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=49.6
Q ss_pred HhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHH
Q 003487 495 AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKAL 568 (816)
Q Consensus 495 ~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l 568 (816)
.|-..++..|+++...+..+..++--+++. +.-+..|...|.+.+-+|+--...|-.|+..|--.+-
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k-------~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~ 69 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKELTILEQK-------KLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLS 69 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 455677788888888888777777666664 3556778888888888888888888888877754443
No 249
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=75.53 E-value=46 Score=37.31 Aligned_cols=112 Identities=14% Similarity=0.230 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH--hhhhhhHHHHHHHHHHHH
Q 003487 485 ASRALSESLAAENSSLTDSYNQQR--SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV--RLECNAADERAKILASEV 560 (816)
Q Consensus 485 ~s~~l~EsLA~ENsaLTd~yNqQ~--~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaA--rle~~aA~ERak~LAaEV 560 (816)
.++++++-|-.+-+.|..+-|..+ ..|---++++...++.++.-...|-.++.-+.-- ...+.-+..=.-.|-.|.
T Consensus 153 eaq~Iaqailkqse~lIN~Ls~rAr~dt~r~Ae~eV~~~eerv~kAs~~L~~yr~kngvfdp~~qaevq~~Lvs~Le~eL 232 (372)
T COG3524 153 EAQKIAQAILKQSEKLINQLSERARRDTVRFAEEEVQKAEERVKKASNDLTDYRIKNGVFDPKAQAEVQMSLVSKLEDEL 232 (372)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCccChhhhhHHHHHHHHHHHHHH
Confidence 467788888888888877777543 2233333333222222222222222211110000 000011222223455566
Q ss_pred HhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhh
Q 003487 561 IGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 596 (816)
Q Consensus 561 V~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqls 596 (816)
+.++.++.++||-.=-.-=++-+|+.+++++++++.
T Consensus 233 ~~iqaqL~tvks~m~~~nPqi~~LkarieSlrkql~ 268 (372)
T COG3524 233 IVIQAQLDTVKSVMNPENPQIPGLKARIESLRKQLL 268 (372)
T ss_pred HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHH
Confidence 666666666655432222244455555555555544
No 250
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=75.23 E-value=54 Score=39.70 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=13.3
Q ss_pred ccccccccceeeecCCCCCCCCC
Q 003487 53 DQHHLEADRVRVTDLDGAGTSDG 75 (816)
Q Consensus 53 ~~~~~~~~~~~~~d~dg~~~s~g 75 (816)
+.+.|....-++.|.+|. +.||
T Consensus 127 ~~~~l~~~i~~~id~~g~-i~d~ 148 (782)
T PRK00409 127 TLPELEQEIHNCIDEEGE-VKDS 148 (782)
T ss_pred CcHHHHHHHHHHhCCCCE-ECCC
Confidence 445566666677777663 4444
No 251
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=75.18 E-value=0.93 Score=54.45 Aligned_cols=96 Identities=24% Similarity=0.338 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHH
Q 003487 478 ALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILA 557 (816)
Q Consensus 478 aLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LA 557 (816)
.+...++.+...-..+-.|...+.++.|.-....+.|-....+|+.+ +..+..|.+-++.+|..|++|++...
T Consensus 620 e~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~-------i~~l~~eleE~~~~~~~~~ek~kka~ 692 (859)
T PF01576_consen 620 ELREALEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAE-------IQQLEEELEEEQSEAEAAEEKAKKAQ 692 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33333333333333444455555555555555555555555555544 34556666667777777777777777
Q ss_pred HHHHhHHHHHHHHhhhhhhhHHH
Q 003487 558 SEVIGLEEKALRLRSNELKLERQ 580 (816)
Q Consensus 558 aEVV~LEEk~l~LRS~ELKlere 580 (816)
++|..|=+.+.+.|+..-++++.
T Consensus 693 ~~~~~l~~eL~~Eq~~~~~le~~ 715 (859)
T PF01576_consen 693 AQAAQLAEELRQEQDHNQHLEKE 715 (859)
T ss_dssp -----------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766666666655554444
No 252
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=75.14 E-value=61 Score=39.25 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=14.5
Q ss_pred cccccccccceeeecCCCCCCCCC
Q 003487 52 HDQHHLEADRVRVTDLDGAGTSDG 75 (816)
Q Consensus 52 ~~~~~~~~~~~~~~d~dg~~~s~g 75 (816)
.+.+.|..+.-++.|.+|. +.|+
T Consensus 121 ~~~~~l~~~i~~~id~~g~-i~d~ 143 (771)
T TIGR01069 121 ITLPPLENDIIACIDDDGK-VKDG 143 (771)
T ss_pred CCcHHHHHHHHHHhCCCCE-ECCC
Confidence 3445677777788887773 3344
No 253
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=74.90 E-value=1.2e+02 Score=32.32 Aligned_cols=120 Identities=21% Similarity=0.272 Sum_probs=72.5
Q ss_pred cccccc-CCchhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH------Hh----hhHHHHHHHHhhHHHH--
Q 003487 450 QHGFYS-TKHNEDFAALEQHIEDLTQEKFA----LQRSLEASRALSESLA------AE----NSSLTDSYNQQRSVVN-- 512 (816)
Q Consensus 450 ~~~F~s-~~~~~~faaLqqhIeDLT~EKfa----LqR~L~~s~~l~EsLA------~E----NsaLTd~yNqQ~~~v~-- 512 (816)
|.-|-. +..+++|..+.++|+.|.+-==. .+|-..+..++.+.++ .. .+.|.+-++.-++.+.
T Consensus 43 ~s~~~~v~~~~~eF~Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~ 122 (243)
T cd07666 43 ASSVRGVKNRPEEFTEMNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRC 122 (243)
T ss_pred HHhccccCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHH
Confidence 444432 77899999999999988653222 3444444445544432 22 4448889999998888
Q ss_pred --HHHHHHHHHHHHH-------HHHHHHhhhhHHHHHHHhhhhhhHHH--------HHHHHHHHHHhHHHHHHHH
Q 003487 513 --QLKSEMEKLQEEI-------KVQLVELESFRNEYANVRLECNAADE--------RAKILASEVIGLEEKALRL 570 (816)
Q Consensus 513 --qLk~dmEqLq~Ei-------~aQ~~~le~l~aErdaArle~~aA~E--------Rak~LAaEVV~LEEk~l~L 570 (816)
.+...+..+...+ ..+..++.++-.+|+.+|++.....| | ..+..||-.||+|+.+.
T Consensus 123 ~~~~~~~~~~l~~~f~~~Lkeyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k~~~dr-~~~~~ev~~~e~kve~a 196 (243)
T cd07666 123 CKATDKRMKGLSEQLLPVIHEYVLYSETLMGVIKRRDQIQAELDSKVEALANKKADR-DLLKEEIEKLEDKVECA 196 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHH
Confidence 6666555555432 23333444556678877776654432 4 34555666666666655
No 254
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=74.82 E-value=95 Score=36.29 Aligned_cols=6 Identities=17% Similarity=0.019 Sum_probs=2.2
Q ss_pred CCCCCC
Q 003487 307 SGLASL 312 (816)
Q Consensus 307 ~~L~s~ 312 (816)
|||-..
T Consensus 90 gyl~~a 95 (489)
T PF05262_consen 90 GYLEAA 95 (489)
T ss_pred HHHHHh
Confidence 333333
No 255
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=74.80 E-value=1.1e+02 Score=35.93 Aligned_cols=108 Identities=19% Similarity=0.118 Sum_probs=52.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHH
Q 003487 500 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER 579 (816)
Q Consensus 500 LTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKler 579 (816)
.+.+|++ ++++..+...+.+-.|...-..++..+.++...+...+..-+.+-+.++.|.-.++|-=..|+.+..-.
T Consensus 340 ~~~e~~q--sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw-- 415 (493)
T KOG0804|consen 340 IMSEYEQ--SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVW-- 415 (493)
T ss_pred HHHHHHH--HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--
Confidence 3344444 334444444444444433333334444555555555555555555555555555544433333333322
Q ss_pred HHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHH
Q 003487 580 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM 619 (816)
Q Consensus 580 ele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklL 619 (816)
+..++++-+...+.++.+..-|.-|||+-+-|
T Consensus 416 --------~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 416 --------RGKLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 22333344444455566666777777777554
No 256
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=74.46 E-value=42 Score=38.05 Aligned_cols=105 Identities=23% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHH
Q 003487 489 LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK-VQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKA 567 (816)
Q Consensus 489 l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~-aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~ 567 (816)
..........++-+..++-......|..+++.|+.+++ ....-++++.+||-+ .-.|||++
T Consensus 206 ~~~~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R------------------~erLEeql 267 (395)
T PF10267_consen 206 VSSQQNLGLQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYR------------------YERLEEQL 267 (395)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH------------------HHHHHHHH
Q ss_pred HHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhh-hhhHHHHHHHHH
Q 003487 568 LRLRSNELKLERQLENSQSEISSYKKKISSLEKER-QDFQSTIEALQE 614 (816)
Q Consensus 568 l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR-~~lqsti~ALQE 614 (816)
-.+ -+|- +.|+.+|+.++...+.|+.=..-|| .+++..++.||.
T Consensus 268 Nd~--~elH-q~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qt 312 (395)
T PF10267_consen 268 NDL--TELH-QNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQT 312 (395)
T ss_pred HHH--HHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHH
No 257
>PRK15396 murein lipoprotein; Provisional
Probab=74.45 E-value=9.6 Score=34.50 Aligned_cols=45 Identities=18% Similarity=0.372 Sum_probs=24.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHH
Q 003487 503 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK 554 (816)
Q Consensus 503 ~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak 554 (816)
+.++....|..|+.++.++.++ ...++.+..+|+.|+..|.+|--
T Consensus 26 kvd~LssqV~~L~~kvdql~~d-------v~~~~~~~~~a~~eA~raN~RlD 70 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSND-------VNAMRSDVQAAKDDAARANQRLD 70 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555554 45555555566666666666643
No 258
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=74.34 E-value=79 Score=29.86 Aligned_cols=43 Identities=14% Similarity=0.230 Sum_probs=25.9
Q ss_pred HHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHH
Q 003487 578 ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQ 620 (816)
Q Consensus 578 erele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLq 620 (816)
+..+..+..++..++..+-.+.++|..|..+++.-.++-+..+
T Consensus 84 ~~~v~~~~~~ve~~r~~~~~a~~~~k~lEkL~ek~~~~~~~~e 126 (147)
T PRK05689 84 RQQLTQWTQKVDNARKYWQEKKQRLEALETLQERYQTEARLAE 126 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666667666666666554444333
No 259
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=73.99 E-value=1.6e+02 Score=35.07 Aligned_cols=10 Identities=30% Similarity=0.092 Sum_probs=4.2
Q ss_pred HHHhHHHHHH
Q 003487 559 EVIGLEEKAL 568 (816)
Q Consensus 559 EVV~LEEk~l 568 (816)
+|+.|..+..
T Consensus 340 ~v~~l~~~~~ 349 (726)
T PRK09841 340 TYRALLEKRQ 349 (726)
T ss_pred hHHHHHHHHH
Confidence 3444444433
No 260
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=73.87 E-value=1.1e+02 Score=31.35 Aligned_cols=148 Identities=11% Similarity=0.160 Sum_probs=89.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003487 456 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 535 (816)
Q Consensus 456 ~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l 535 (816)
+..+.+|..+...|+.|..-=-.+.|..+|-.+=...|+.+...+-..||..+..=..|.+-+++.=+-+......++.+
T Consensus 10 ~~~d~~F~~ikey~~~L~~~l~~iekv~~Rl~~r~~~l~~~~~e~g~~f~~ls~~E~~l~~~le~~g~~~d~~~~~~~~~ 89 (201)
T cd07622 10 RNPDKRFEDLKNYSDELQTNLNNLLKVRARLAERLYGVYKIHANYGRVFSEWSAIEKEMGDGLQKAGHYMDSYAASIDNG 89 (201)
T ss_pred CCCCHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888765444555554444444556667777888888776666666666555444444433333332
Q ss_pred ----------HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhh
Q 003487 536 ----------RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDF 605 (816)
Q Consensus 536 ----------~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~l 605 (816)
--||...-.....+.-+-...-.+...+++.+-+.+.+ ++.+++.++.+.+.+...+.
T Consensus 90 ~~~~~~f~e~LkEy~~ya~slk~vlk~r~~~q~~~e~~~~~L~~k~~~---l~~~ve~a~~~~e~f~~~~~--------- 157 (201)
T cd07622 90 LEDEELIADQLKEYLFFADSLRAVCKKHELLQYDLEKAEDALANKKQQ---GEEAVKEAKDELNEFVKKAL--------- 157 (201)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---------
Confidence 23555555555555555556666666677666665543 56777777666666655544
Q ss_pred HHHHHHHHHHH
Q 003487 606 QSTIEALQEEK 616 (816)
Q Consensus 606 qsti~ALQEEK 616 (816)
..++.-|++|
T Consensus 158 -~E~~rF~~~K 167 (201)
T cd07622 158 -EDVERFKKQK 167 (201)
T ss_pred -HHHHHHHHHH
Confidence 4555556555
No 261
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=73.70 E-value=32 Score=30.55 Aligned_cols=59 Identities=27% Similarity=0.300 Sum_probs=29.4
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHH
Q 003487 498 SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 556 (816)
Q Consensus 498 saLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~L 556 (816)
+.|-.+|++--..+..|+.++++|+++-.+-....+.++.|-...+.+.++..+|-+.|
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555444444444555555555555555555554443
No 262
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.56 E-value=21 Score=32.52 Aligned_cols=58 Identities=21% Similarity=0.345 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHH
Q 003487 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSE 517 (816)
Q Consensus 460 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~d 517 (816)
|-++-||=.||+|-+++-.|+...+-++.--|.|..||+.|...-+.--..+-.|-.+
T Consensus 18 dTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGk 75 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456677777888888777777777777777777777766654443333333333333
No 263
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=73.37 E-value=22 Score=38.34 Aligned_cols=67 Identities=27% Similarity=0.371 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhH
Q 003487 512 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQ 585 (816)
Q Consensus 512 ~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~ 585 (816)
.++|.+++.++.|-. .+..|....+.++++-.||-|.|--|--.|||+..+|--..-+|++..++|-
T Consensus 138 ee~kekl~E~~~Eke-------eL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 138 EELKEKLEELQKEKE-------ELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 444444444444433 3333344444445678899999999999999988765434444444444333
No 264
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=73.17 E-value=76 Score=37.41 Aligned_cols=54 Identities=31% Similarity=0.260 Sum_probs=42.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHH-------HHHHhhhHHHHH
Q 003487 705 MIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSR-------KLEHQTQRLELL 758 (816)
Q Consensus 705 mI~NInaLisELa~Ereel~~AL~~es~~~s~Lk~lN~ELsr-------KLE~qTQRLELl 758 (816)
-|++.+++|+||-.+-+-+-..|...-+.|-.+|+.|-++-+ |||-.-+.|-|+
T Consensus 488 ~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~lnL~ 548 (622)
T COG5185 488 DIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLNLL 548 (622)
T ss_pred HhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 368889999999999999999999999999999999887754 444444444443
No 265
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=73.14 E-value=1.1e+02 Score=30.82 Aligned_cols=16 Identities=38% Similarity=0.295 Sum_probs=6.8
Q ss_pred HHHHHHHhHHHHHHHH
Q 003487 555 ILASEVIGLEEKALRL 570 (816)
Q Consensus 555 ~LAaEVV~LEEk~l~L 570 (816)
..+.+...+|+++-.+
T Consensus 88 ~al~~k~~~e~~~~~l 103 (221)
T PF04012_consen 88 EALQRKADLEEQAERL 103 (221)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444444
No 266
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=73.02 E-value=96 Score=36.88 Aligned_cols=47 Identities=17% Similarity=0.350 Sum_probs=27.9
Q ss_pred HHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 003487 578 ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 624 (816)
Q Consensus 578 erele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLR 624 (816)
++.|..+.++...+...+.+|.||=...+..++.++.......-++.
T Consensus 388 ~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~me 434 (570)
T COG4477 388 EKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYME 434 (570)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666666666666666666666666655544444444
No 267
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=72.90 E-value=1.2e+02 Score=31.19 Aligned_cols=57 Identities=18% Similarity=0.382 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003487 468 HIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 524 (816)
Q Consensus 468 hIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~E 524 (816)
.|.-|-+|--.+.+-.++...++..+..||..|+.---.....+.+|+.++..++.+
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kd 84 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKD 84 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555556666777788888999999988887766666666666666655543
No 268
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=72.77 E-value=77 Score=30.05 Aligned_cols=98 Identities=16% Similarity=0.135 Sum_probs=64.5
Q ss_pred ccccccccCCchhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003487 448 ENQHGFYSTKHNED----FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE 523 (816)
Q Consensus 448 e~~~~F~s~~~~~~----faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~ 523 (816)
-+|+.|....+..- -...+.-.+++..+.-.+.=.+.+++-+++.-..|-+.....+-+--..+.+++.+|+.|+.
T Consensus 23 k~~~~~~~~~~~~~~~~~~e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~ 102 (139)
T PF05615_consen 23 KRFLKWCNLSDSILSGQPSEESQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKE 102 (139)
T ss_pred HHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554443210 13345556777788888888888888888877777766666666666777788889988888
Q ss_pred HHHHHHHHhhhhHHHHHHHhhhh
Q 003487 524 EIKVQLVELESFRNEYANVRLEC 546 (816)
Q Consensus 524 Ei~aQ~~~le~l~aErdaArle~ 546 (816)
++..-...+.. +.|||+.--.+
T Consensus 103 ~L~~ak~~r~~-k~eyd~La~~I 124 (139)
T PF05615_consen 103 ELEEAKRVRQN-KEEYDALAKKI 124 (139)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHH
Confidence 87665555544 34777643333
No 269
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=72.40 E-value=2e+02 Score=33.57 Aligned_cols=98 Identities=20% Similarity=0.294 Sum_probs=70.7
Q ss_pred hhHHHHHHHhhhhhh-HHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhH----HHHHHHHHHhhhHHHhhhhhHHH
Q 003487 534 SFRNEYANVRLECNA-ADERAKILASEVIGLEEKALRLRSNELKLERQLENSQ----SEISSYKKKISSLEKERQDFQST 608 (816)
Q Consensus 534 ~l~aErdaArle~~a-A~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~----~E~~s~~rqlsslekeR~~lqst 608 (816)
.+.+||+..+..... -..+-.+|.--||.||+-+-.||+.-+-.=..|.++. +-+-.-+.++--+++-+-.|+..
T Consensus 198 ~l~~e~n~~k~s~~s~~~k~l~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ek 277 (446)
T KOG4438|consen 198 SLLAEYNKMKKSSTSEKNKILNALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILEEK 277 (446)
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 457788887776665 6778888888899999999889988775555555544 44444555666677778888888
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC
Q 003487 609 IEALQEEKKMMQSKLRKASGSGK 631 (816)
Q Consensus 609 i~ALQEEKklLqskLRka~~~gk 631 (816)
|+.||-=.+-++.-++++...+-
T Consensus 278 v~~~qti~~e~~~~lk~i~~~~~ 300 (446)
T KOG4438|consen 278 VTNLQTIEKELKALLKKISSDGV 300 (446)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhh
Confidence 88888777777777776666553
No 270
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=72.17 E-value=59 Score=33.01 Aligned_cols=79 Identities=18% Similarity=0.315 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhhhHHHHH--------------HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhH
Q 003487 484 EASRALSESLAAENSSLTDS--------------YNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAA 549 (816)
Q Consensus 484 ~~s~~l~EsLA~ENsaLTd~--------------yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA 549 (816)
..-.++.++|.+|+=--+++ .++....+..|+.+++.++.+|..-...++..+.+|. +-
T Consensus 30 ~~VKdvlq~LvDDglV~~EKiGssn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~-------~~ 102 (188)
T PF03962_consen 30 MSVKDVLQSLVDDGLVHVEKIGSSNYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGRE-------ES 102 (188)
T ss_pred hhHHHHHHHHhccccchhhhccCeeEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------cc
Confidence 44578899999987554443 4555556666666666666665555555555544443 34
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q 003487 550 DERAKILASEVIGLEEKALRL 570 (816)
Q Consensus 550 ~ERak~LAaEVV~LEEk~l~L 570 (816)
.||...| .+.-.|++++.+|
T Consensus 103 ~eR~~~l-~~l~~l~~~~~~l 122 (188)
T PF03962_consen 103 EEREELL-EELEELKKELKEL 122 (188)
T ss_pred HHHHHHH-HHHHHHHHHHHHH
Confidence 6776643 3444444444433
No 271
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=72.07 E-value=1.1e+02 Score=32.24 Aligned_cols=41 Identities=20% Similarity=0.317 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 003487 583 NSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 623 (816)
Q Consensus 583 ~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskL 623 (816)
.....-...+.++.+|+.+|..++.-++.||..-+.|+...
T Consensus 144 ~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 144 QVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQA 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455666677777777777777777777777776654
No 272
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=71.95 E-value=79 Score=28.81 Aligned_cols=32 Identities=6% Similarity=0.074 Sum_probs=17.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003487 500 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE 531 (816)
Q Consensus 500 LTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~ 531 (816)
+...||+-...+..|...+.+|+.++.-...+
T Consensus 4 ~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v 35 (105)
T cd00632 4 QLAQLQQLQQQLQAYIVQRQKVEAQLNENKKA 35 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666655555555444333333
No 273
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=71.65 E-value=2e+02 Score=33.29 Aligned_cols=34 Identities=21% Similarity=0.210 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003487 463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAE 496 (816)
Q Consensus 463 aaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~E 496 (816)
..+++-++++..++-.+++-++..+.-.+.|-.-
T Consensus 171 ~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~ 204 (563)
T TIGR00634 171 LKARQQLKDRQQKEQELAQRLDFLQFQLEELEEA 204 (563)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhC
Confidence 3334444444444555555555555444444433
No 274
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=71.61 E-value=1.4e+02 Score=31.48 Aligned_cols=126 Identities=19% Similarity=0.283 Sum_probs=75.2
Q ss_pred HHHHHHHhhhHHHHHHHHh-h-----------HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHH
Q 003487 489 LSESLAAENSSLTDSYNQQ-R-----------SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 556 (816)
Q Consensus 489 l~EsLA~ENsaLTd~yNqQ-~-----------~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~L 556 (816)
=++.+|.+...+.+.|+-+ . .......+...++++|+....-+|...+-.|..+..++..|.+-.+..
T Consensus 78 qt~~~a~~h~~lse~l~~~i~~~l~~l~~d~~~~~Kk~~e~~~~lq~el~~~~~eL~k~kK~Y~~~~~ea~~A~~K~~~a 157 (241)
T cd07656 78 QTKQESRDHSTLSDIYSNNLVQRLGQMSEDLQRISKKCREIGSQLHDELLRVLNELQTAMKTYHTYHAESKSAERKLKEA 157 (241)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777653 1 222334455667788888888888888999988888887776666554
Q ss_pred HHHHHhHHH---HHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHH
Q 003487 557 ASEVIGLEE---KALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK 617 (816)
Q Consensus 557 AaEVV~LEE---k~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKk 617 (816)
.+..--.+. .-...+..--|++++++..+ .+|..+...+.+-|-+-...|.+....+.
T Consensus 158 e~~~~k~~~~~~~~~~~~~~~~~~~~~~eK~k---~k~~~~~~k~~~akNeYll~l~~aN~~~~ 218 (241)
T cd07656 158 EKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQ---AKYSEAKLKCTKARNEYLLNLAAANATIH 218 (241)
T ss_pred HHHHhhcccccccchhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433211100 11122233344566666555 34455555556667777777777766553
No 275
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=71.53 E-value=1.1e+02 Score=33.57 Aligned_cols=11 Identities=9% Similarity=-0.118 Sum_probs=6.4
Q ss_pred hhcCCCCccCC
Q 003487 625 KASGSGKSIDF 635 (816)
Q Consensus 625 ka~~~gk~~~~ 635 (816)
+++..|.+...
T Consensus 219 ~AP~dG~V~~~ 229 (390)
T PRK15136 219 VSPMTGYVSRR 229 (390)
T ss_pred ECCCCeEEEEE
Confidence 46777775433
No 276
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=71.50 E-value=3.2e+02 Score=35.67 Aligned_cols=87 Identities=20% Similarity=0.187 Sum_probs=57.3
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003487 454 YSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE 533 (816)
Q Consensus 454 ~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le 533 (816)
...+...+++.+..+...+..|+...+-.++.+-+=.++|-.+-..|...-+...+.+..++..+-.+..++..-+.+.+
T Consensus 844 ~~~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e 923 (1294)
T KOG0962|consen 844 CLQKEVIEQEREISRLINLRNELKEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKE 923 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHH
Confidence 34455566777777777777777776666666666666666666677777777777777776666666666555556666
Q ss_pred hhHHHHH
Q 003487 534 SFRNEYA 540 (816)
Q Consensus 534 ~l~aErd 540 (816)
.+++++.
T Consensus 924 ~~k~~~~ 930 (1294)
T KOG0962|consen 924 ELKNERN 930 (1294)
T ss_pred HHHHHhh
Confidence 6666643
No 277
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=71.23 E-value=39 Score=36.67 Aligned_cols=63 Identities=32% Similarity=0.474 Sum_probs=46.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 003487 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 526 (816)
Q Consensus 457 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~ 526 (816)
.|....+-+++.|.|||+|---|+-.-+.-|++++.|-.+|-.|. ..++.|..++-.|.+.-+
T Consensus 87 rKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~-------~~le~~~~~l~~~~~~~~ 149 (292)
T KOG4005|consen 87 RKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELD-------SELELLRQELAELKQQQQ 149 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-------HHHHHHHHHHHhhHHHHH
Confidence 456778889999999999999998888888888888877776554 445555555555555433
No 278
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=71.00 E-value=28 Score=32.04 Aligned_cols=60 Identities=23% Similarity=0.372 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHH
Q 003487 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEME 519 (816)
Q Consensus 460 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmE 519 (816)
|.++-||--|++|-+++..|....+..+.--+.|..||..|...-|.=-..+..|=..|+
T Consensus 18 dtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~ 77 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456677777888888888877777777777777777777777666665556655555553
No 279
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=70.90 E-value=54 Score=38.73 Aligned_cols=141 Identities=24% Similarity=0.277 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHH-------hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh------------HHHHHH
Q 003487 481 RSLEASRALSESLAA-------ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF------------RNEYAN 541 (816)
Q Consensus 481 R~L~~s~~l~EsLA~-------ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l------------~aErda 541 (816)
|+|+-+-++-+.|-. .|+.|-++.|+--..|.+|+-++-|--.-+..+-.+.+-= -.+|.+
T Consensus 76 ~dlElaAkiGqsllk~nk~Lq~~nesLeEqv~~~~d~vvql~hels~k~ellr~ys~~~ees~~~~v~~~P~~~~~s~S~ 155 (596)
T KOG4360|consen 76 RDLELAAKIGQSLLKANKALQEDNESLEEQVDAPWDRVVQLGHELSRKDELLRGYSAAIEESEAASVCSTPLVSNESRSA 155 (596)
T ss_pred chhHHHHHHHHHHHhhhhhhhhhhhhhHhhhcchHHHHHHhhhhhhhhhhhhheeeeccccccccccccCCCccCcchhh
Confidence 556666666555544 4444555566666666666655544333333332222111 123333
Q ss_pred Hhhhh-hhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhh----hHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHH
Q 003487 542 VRLEC-NAADERAKILASEVIGLEEKALRLRSNELKLERQLEN----SQSEISSYKKKISSLEKERQDFQSTIEALQEEK 616 (816)
Q Consensus 542 Arle~-~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~----l~~E~~s~~rqlsslekeR~~lqsti~ALQEEK 616 (816)
.+-+. .+-.|+-|-+-.|.+.|--||..+|-+++.-+-.-.. ...+.+-++.|+.++.++=+..-..+..+|||-
T Consensus 156 ~~~~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~ 235 (596)
T KOG4360|consen 156 FQRELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEEN 235 (596)
T ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222 2345677777777777777777777666543222111 334556666777777666666666666666665
Q ss_pred HHHHH
Q 003487 617 KMMQS 621 (816)
Q Consensus 617 klLqs 621 (816)
-.|.+
T Consensus 236 skLls 240 (596)
T KOG4360|consen 236 SKLLS 240 (596)
T ss_pred HHHHH
Confidence 44433
No 280
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=70.39 E-value=2.5e+02 Score=33.83 Aligned_cols=90 Identities=24% Similarity=0.264 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 003487 466 EQHIEDLTQEKFALQRSLEASR---ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 542 (816)
Q Consensus 466 qqhIeDLT~EKfaLqR~L~~s~---~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaA 542 (816)
+.-|+-|-.+-..|.--++.|. +=++..-.|+.+|.+..|.-+.....|..++=.+..+++.+--+++..-.+++-+
T Consensus 307 EeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l 386 (581)
T KOG0995|consen 307 EEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSL 386 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444544454442 3345566778888888888888888888888777777777777777777777666
Q ss_pred hhhhhhH-HHHHHH
Q 003487 543 RLECNAA-DERAKI 555 (816)
Q Consensus 543 rle~~aA-~ERak~ 555 (816)
+....-- -++++-
T Consensus 387 ~~~i~l~~~~~~~n 400 (581)
T KOG0995|consen 387 IRRIKLGIAENSKN 400 (581)
T ss_pred HHHHHHHHHHHhcc
Confidence 5554433 444443
No 281
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=70.21 E-value=1.5e+02 Score=31.36 Aligned_cols=151 Identities=14% Similarity=0.209 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHH------------HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 003487 477 FALQRSLEASRALSESLAAENSSLTDSYNQQRSV------------VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL 544 (816)
Q Consensus 477 faLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~------------v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArl 544 (816)
+.+.++-.-.-.=++.+|++++.+.+..+-+-.. -..+-.+.+.++.++......|+..+..|+.|-.
T Consensus 63 ~t~~~aw~~~l~e~~~~A~~H~~~~~~L~~~v~~~l~~~~~~~k~~rK~~~~~~~k~qk~~~~~~~~lekaKk~Y~~ack 142 (253)
T cd07676 63 YTSCRAFLMTLNEMNDYAGQHEVISENLASQIIVELTRYVQELKQERKSHFHDGRKAQQHIETCWKQLESSKRRFERDCK 142 (253)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444556677777766666443211 1112234567888889999999999999999998
Q ss_pred hhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhh-----hhhHHHHHHHH--HHHH
Q 003487 545 ECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKER-----QDFQSTIEALQ--EEKK 617 (816)
Q Consensus 545 e~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR-----~~lqsti~ALQ--EEKk 617 (816)
+...|..+-...-+....=.+++.++|..--+-..+++..+ ..|..+|..+-+.- .+|-.+++.|| ||+|
T Consensus 143 e~E~A~~~~~ka~~d~~~sk~~~eK~k~~~~~~~~~~e~aK---n~Y~~~l~~~N~~q~~~Y~e~mp~vfd~lQ~lee~R 219 (253)
T cd07676 143 EADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSK---AEYSSYLQKFNKEQHEHYYTHIPNIFQKIQEMEERR 219 (253)
T ss_pred HHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 88888876544322211111122222222222222233222 45666666664443 56788899999 5553
Q ss_pred H--HHHHHHhhcCCC
Q 003487 618 M--MQSKLRKASGSG 630 (816)
Q Consensus 618 l--LqskLRka~~~g 630 (816)
. |..=|.+++.-+
T Consensus 220 i~~l~e~l~~~~~~e 234 (253)
T cd07676 220 IGRVGESMKTYAEVD 234 (253)
T ss_pred HHHHHHHHHHHHHHH
Confidence 3 333344444433
No 282
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=70.16 E-value=1.2e+02 Score=31.19 Aligned_cols=86 Identities=16% Similarity=0.115 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 003487 463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 542 (816)
Q Consensus 463 aaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaA 542 (816)
..++.+++-+...+-.+...|.++++.=+....|.+.+...|..+..-+ -+.++|+++.-+.--.......+.||..+
T Consensus 102 K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e~a~~~~~~~~~~~--~~ke~eK~~~K~~k~~~~~~~a~~~Y~~~ 179 (239)
T cd07647 102 KKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAYEKSSSGA--QPKEAEKLKKKAAQCKTSAEEADSAYKSS 179 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666667777777777777777777777777776665432 24566777666555555556667777776
Q ss_pred hhhhhhHH
Q 003487 543 RLECNAAD 550 (816)
Q Consensus 543 rle~~aA~ 550 (816)
....+.+.
T Consensus 180 v~~l~~~~ 187 (239)
T cd07647 180 IGCLEDAR 187 (239)
T ss_pred HHHHHHHH
Confidence 66555554
No 283
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=70.14 E-value=45 Score=42.09 Aligned_cols=59 Identities=24% Similarity=0.362 Sum_probs=38.3
Q ss_pred HHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHH
Q 003487 559 EVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKM 618 (816)
Q Consensus 559 EVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKkl 618 (816)
++-..|+++-. |-.-++..-+..+.+..++..++.+.+++++-..+.+.|+.|+.+.+.
T Consensus 277 ~i~~ke~~l~e-rp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~a 335 (1141)
T KOG0018|consen 277 KISEKEEKLAE-RPELIKVKENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKA 335 (1141)
T ss_pred HHHHHHHHHhh-hhHHhhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33344444444 444555556666666777777777777788888888888887766543
No 284
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=70.14 E-value=91 Score=32.89 Aligned_cols=16 Identities=25% Similarity=0.329 Sum_probs=7.3
Q ss_pred HHHHHHHhhhhhhHHH
Q 003487 536 RNEYANVRLECNAADE 551 (816)
Q Consensus 536 ~aErdaArle~~aA~E 551 (816)
+.||+.++.+...|..
T Consensus 144 ~~~~~~~~~~~~~a~~ 159 (331)
T PRK03598 144 ANDLENARSSRDQAQA 159 (331)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445554444444433
No 285
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=69.90 E-value=21 Score=32.34 Aligned_cols=62 Identities=19% Similarity=0.240 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh--h--hhhhHHHHHHHHHHHHHhHHHHHHHHh
Q 003487 510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR--L--ECNAADERAKILASEVIGLEEKALRLR 571 (816)
Q Consensus 510 ~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaAr--l--e~~aA~ERak~LAaEVV~LEEk~l~LR 571 (816)
.-.+|+.++.+||..++-+.....++..=..... + ........++.|=.||..||+.|.+|-
T Consensus 9 ~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE 74 (88)
T PF14389_consen 9 RRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLE 74 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 4467888898888888877776666632222211 1 113556789999999999999998663
No 286
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=69.84 E-value=36 Score=38.55 Aligned_cols=30 Identities=10% Similarity=0.197 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 003487 510 VVNQLKSEMEKLQEEIKVQLVELESFRNEY 539 (816)
Q Consensus 510 ~v~qLk~dmEqLq~Ei~aQ~~~le~l~aEr 539 (816)
.+.+|+.++++|+.+++.....++.+.+.+
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666655555555554444
No 287
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=69.80 E-value=1.5e+02 Score=31.10 Aligned_cols=68 Identities=15% Similarity=0.185 Sum_probs=31.7
Q ss_pred HhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhH
Q 003487 531 ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL 598 (816)
Q Consensus 531 ~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlssl 598 (816)
.+..+..|||.|....+.....---|-.-.--+-+-+.-+|.+|=+|.+.++.....+...+.+..+|
T Consensus 70 ~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aL 137 (207)
T PF05010_consen 70 EIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQAL 137 (207)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666655555332222222222222333344455666666666655555544444444433
No 288
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=69.80 E-value=2.3e+02 Score=34.82 Aligned_cols=48 Identities=23% Similarity=0.350 Sum_probs=33.9
Q ss_pred HHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 003487 578 ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625 (816)
Q Consensus 578 erele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRk 625 (816)
+.++..+...+..+++.+.+++-.|...-..+-+.|-|...|+..|++
T Consensus 161 q~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk 208 (739)
T PF07111_consen 161 QEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSK 208 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666777777777777777777777777777777777776664
No 289
>PRK02119 hypothetical protein; Provisional
Probab=69.78 E-value=35 Score=30.23 Aligned_cols=57 Identities=23% Similarity=0.204 Sum_probs=33.1
Q ss_pred HHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCC
Q 003487 559 EVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGS 629 (816)
Q Consensus 559 EVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRka~~~ 629 (816)
|...||+|+..|=+.--=.+..++.|+..+-. .+..|+.|+.+-++|..||+.+..+
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~--------------Qq~~id~L~~ql~~L~~rl~~~~~~ 59 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIE--------------QQFVIDKMQVQLRYMANKLKDMQPS 59 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34456666655533333335555555544333 3345677888888999999875533
No 290
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=69.74 E-value=99 Score=34.58 Aligned_cols=115 Identities=18% Similarity=0.215 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHhhhhhhHHHHHHHHH-HHHHhHHHHHHHHhhhhhhhHHHHhhhHHHH
Q 003487 511 VNQLKSEMEKLQEEIKVQLVELESFRNE-YANVRLECNAADERAKILA-SEVIGLEEKALRLRSNELKLERQLENSQSEI 588 (816)
Q Consensus 511 v~qLk~dmEqLq~Ei~aQ~~~le~l~aE-rdaArle~~aA~ERak~LA-aEVV~LEEk~l~LRS~ELKlerele~l~~E~ 588 (816)
|.+.+..++.|+.++..+.+.++..++. ++.|+.++ +|-..|+ .-++.-| ++.+.+-.--+.+-.+....
T Consensus 100 la~a~~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~~~----~R~~~L~~~g~vs~~-~~~~a~~a~~~A~A~~~~a~--- 171 (352)
T COG1566 100 LAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNEL----ERRAELAQRGVVSRE-ELDRARAALQAAEAALAAAQ--- 171 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhcCcccHH-HHHHHHHHHHHHHHHHHHhH---
Confidence 3344455555555555555555665553 55544433 4555555 3344333 33334444444444444443
Q ss_pred HHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH----hhcCCCCcc
Q 003487 589 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR----KASGSGKSI 633 (816)
Q Consensus 589 ~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLR----ka~~~gk~~ 633 (816)
...+..+..++.++...+..|..++...+...--|. +++..|.+.
T Consensus 172 ~~~~~~~~~l~~~~~~~~~~v~~a~a~~~~A~l~L~~T~IrAP~dG~V~ 220 (352)
T COG1566 172 AAQKQNLALLESEVSGAQAQVASAEAALDQAKLDLERTVIRAPVDGYVT 220 (352)
T ss_pred HHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHhhCCEEECCCCceEE
Confidence 455667777777788888888888877766666665 366667653
No 291
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=69.38 E-value=1.9e+02 Score=32.11 Aligned_cols=107 Identities=22% Similarity=0.342 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHH
Q 003487 511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISS 590 (816)
Q Consensus 511 v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s 590 (816)
+.+|+.....+.++|+...-....++.+.--+-.++..-..+|..+-.++|.+=.++-.++- ++.++..+++-
T Consensus 167 i~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~e-------e~~~~~~elre 239 (294)
T COG1340 167 IDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHE-------EFRNLQNELRE 239 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHH
Confidence 33344444444444443333334444444444555556666777777777777666665533 33344444444
Q ss_pred HHHHhhhHHHh--hhhhHHHHHHHHHHHHHHHHHHH
Q 003487 591 YKKKISSLEKE--RQDFQSTIEALQEEKKMMQSKLR 624 (816)
Q Consensus 591 ~~rqlssleke--R~~lqsti~ALQEEKklLqskLR 624 (816)
+++.+.+|... ........+-+++..+.+..||.
T Consensus 240 ~~k~ik~l~~~~~~~~~~~~~ee~kera~ei~EKfk 275 (294)
T COG1340 240 LEKKIKALRAKEKAAKRREKREELKERAEEIYEKFK 275 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444433211 12223333455666666666665
No 292
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=69.27 E-value=1.5e+02 Score=30.86 Aligned_cols=50 Identities=28% Similarity=0.354 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhHHHHHHHHhh
Q 003487 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAA--------ENSSLTDSYNQQR 508 (816)
Q Consensus 459 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~--------ENsaLTd~yNqQ~ 508 (816)
.+.+..||+|..+|-..=-+|-|...+-+.-...||. ||..|.+-+-.-+
T Consensus 10 ~~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~E~~~L~~~L~~la 67 (211)
T cd07598 10 QERITNVEKHFGELCQDFAAYTRKTARLRDKGDELAKSINAYADTENPSLKQGLKNFA 67 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 4678899999999999888898888888877777765 4555554444444
No 293
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=69.00 E-value=1.1e+02 Score=29.15 Aligned_cols=73 Identities=23% Similarity=0.272 Sum_probs=30.4
Q ss_pred HHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHH
Q 003487 490 SESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALR 569 (816)
Q Consensus 490 ~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~ 569 (816)
++.||..|-++-.++..++..+.++..++..|+.+ ......+++.+...+.-..=++ .|-..+-..|+.+-.
T Consensus 43 n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~-------~~~k~~~~~~l~~~~s~~~l~~-~L~~~~~e~eeeSe~ 114 (150)
T PF07200_consen 43 NEELAEQNLSLEPELEELRSQLQELYEELKELESE-------YQEKEQQQDELSSNYSPDALLA-RLQAAASEAEEESEE 114 (150)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHccCCHHHHHH-HHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444433 3333334444433333222222 255556666666655
Q ss_pred H
Q 003487 570 L 570 (816)
Q Consensus 570 L 570 (816)
+
T Consensus 115 l 115 (150)
T PF07200_consen 115 L 115 (150)
T ss_dssp H
T ss_pred H
Confidence 5
No 294
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=68.76 E-value=3.4e+02 Score=34.78 Aligned_cols=155 Identities=23% Similarity=0.256 Sum_probs=89.9
Q ss_pred cCCCccccccccccccCCchhhHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHH
Q 003487 440 LGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQ---------EKFALQRSLEASRALSESLAAENSSLTDSYNQQRSV 510 (816)
Q Consensus 440 ~~~dE~s~e~~~~F~s~~~~~~faaLqqhIeDLT~---------EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~ 510 (816)
...||.+++..-++-.. -.-.|++.|+.|-. -|.+..|-|.+.+..++ -..-++.||+-...
T Consensus 186 lr~~e~~Le~~~~~~~~----~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~-----y~~~~~ey~~~k~~ 256 (1072)
T KOG0979|consen 186 LREDEKSLEDKLTTKTE----KLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVE-----YKKHDREYNAYKQA 256 (1072)
T ss_pred HHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----hHhhhHHHHHHHHH
Confidence 44566666655554332 22334444443322 13344555555555553 34568899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhh
Q 003487 511 VNQLKSEMEKLQEEIKVQLVELES-------FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLEN 583 (816)
Q Consensus 511 v~qLk~dmEqLq~Ei~aQ~~~le~-------l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~ 583 (816)
+.-++.+++.|..+++-=.-..+. ..+++.-+..+|++|..+++..-...-..|.++-++.-..--++++.+-
T Consensus 257 ~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~ 336 (1072)
T KOG0979|consen 257 KDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEK 336 (1072)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998876544433333 3455667788899999988876655555555554444333333444444
Q ss_pred hHHHHHHHHHHhhhHHHhhh
Q 003487 584 SQSEISSYKKKISSLEKERQ 603 (816)
Q Consensus 584 l~~E~~s~~rqlsslekeR~ 603 (816)
...+|.++++-+..++.+++
T Consensus 337 rq~~i~~~~k~i~~~q~el~ 356 (1072)
T KOG0979|consen 337 RQKRIEKAKKMILDAQAELQ 356 (1072)
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 44444455555554444444
No 295
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=68.71 E-value=68 Score=38.57 Aligned_cols=67 Identities=24% Similarity=0.430 Sum_probs=35.9
Q ss_pred HHHhHHHHHHHHhh---hhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q 003487 559 EVIGLEEKALRLRS---NELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSI 633 (816)
Q Consensus 559 EVV~LEEk~l~LRS---~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRka~~~gk~~ 633 (816)
|+-.||.+|-++|- .+++..++++.+..+|.++++++.--.+.+..|.-.++.| .++|++-..|+..
T Consensus 451 eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l--------~k~~~lE~sG~g~ 520 (652)
T COG2433 451 EIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAEL--------RKMRKLELSGKGT 520 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHhhhhcCCCc
Confidence 34444444444432 3445567777777788888888874444444433332222 2355555556653
No 296
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=67.96 E-value=1.4e+02 Score=31.72 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHhh
Q 003487 611 ALQEEKKMMQSKLRKA 626 (816)
Q Consensus 611 ALQEEKklLqskLRka 626 (816)
..+.+.+.++..|.++
T Consensus 187 ~~~a~~~~~~a~l~~a 202 (346)
T PRK10476 187 ALVAQRAAREAALAIA 202 (346)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3344444555555543
No 297
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=67.89 E-value=1.7e+02 Score=30.94 Aligned_cols=87 Identities=20% Similarity=0.362 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHH--------HH----HHHHhHHHHHHHHhhhhhhh
Q 003487 510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI--------LA----SEVIGLEEKALRLRSNELKL 577 (816)
Q Consensus 510 ~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~--------LA----aEVV~LEEk~l~LRS~ELKl 577 (816)
.|...+++|-++++.+..+...-..+..+|+.++.....=.++|+. || .++-.||+.+..++...-.+
T Consensus 32 ~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~ 111 (225)
T COG1842 32 AIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQA 111 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555544444444431 23 33334555555444333333
Q ss_pred HHHHhhhHHHHHHHHHHhh
Q 003487 578 ERQLENSQSEISSYKKKIS 596 (816)
Q Consensus 578 erele~l~~E~~s~~rqls 596 (816)
+..++.++..+..++.|+.
T Consensus 112 ~~~~~~l~~~~~~Le~Ki~ 130 (225)
T COG1842 112 EEQVEKLKKQLAALEQKIA 130 (225)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334433333333333
No 298
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=67.45 E-value=57 Score=35.41 Aligned_cols=99 Identities=15% Similarity=0.211 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 003487 463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 542 (816)
Q Consensus 463 aaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaA 542 (816)
.=+++.++++..+--..+..|+..++....|-+.-..|...|........+|+.+++..+.-+..-.--+..|..|+.+=
T Consensus 217 ~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW 296 (344)
T PF12777_consen 217 EPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERW 296 (344)
T ss_dssp CHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhH
Confidence 34667888888888888888888888888888888888888888888888888888777777666666667777777665
Q ss_pred hhhhhhHHHHHHHHHHHHH
Q 003487 543 RLECNAADERAKILASEVI 561 (816)
Q Consensus 543 rle~~aA~ERak~LAaEVV 561 (816)
......-.++...|--.++
T Consensus 297 ~~~~~~l~~~~~~l~GD~l 315 (344)
T PF12777_consen 297 SEQIEELEEQLKNLVGDSL 315 (344)
T ss_dssp HCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHH
Confidence 5555555555554444433
No 299
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=67.10 E-value=60 Score=37.67 Aligned_cols=19 Identities=42% Similarity=0.588 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 003487 507 QRSVVNQLKSEMEKLQEEI 525 (816)
Q Consensus 507 Q~~~v~qLk~dmEqLq~Ei 525 (816)
|-..|+-|=..|.+|++|-
T Consensus 199 qEalvN~LwKrmdkLe~ek 217 (552)
T KOG2129|consen 199 QEALVNSLWKRMDKLEQEK 217 (552)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555553
No 300
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=66.88 E-value=2.3e+02 Score=32.21 Aligned_cols=82 Identities=11% Similarity=0.133 Sum_probs=46.9
Q ss_pred HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH--------HHHHHhhhhHHH-HHHHhhhhhhHHHHHHHHHHH
Q 003487 489 LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK--------VQLVELESFRNE-YANVRLECNAADERAKILASE 559 (816)
Q Consensus 489 l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~--------aQ~~~le~l~aE-rdaArle~~aA~ERak~LAaE 559 (816)
..-++-.|-...+.+|-+++.++..-|+.+--+++-+- .+-.++=+-..+ .--|..+|+.|.-=-...|+-
T Consensus 77 ~er~~r~e~QkAa~~FeRat~vl~~AkeqVsl~~~sL~~~~~~~~~~~~~evlnh~~qrV~EaE~e~t~aE~~Has~a~~ 156 (426)
T KOG2008|consen 77 VERQARLEAQKAAQDFERATEVLRAAKEQVSLAEQSLLEDDKRQFDSAWQEVLNHATQRVMEAEQEKTRAELVHASTAAR 156 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677788899999999888888755554322 111111111222 223555666665555555666
Q ss_pred HHhHHHHHHHH
Q 003487 560 VIGLEEKALRL 570 (816)
Q Consensus 560 VV~LEEk~l~L 570 (816)
...|+.+++++
T Consensus 157 ~l~l~~~~R~~ 167 (426)
T KOG2008|consen 157 YLALMGRMRQL 167 (426)
T ss_pred HHHHHHHHHHH
Confidence 66777776654
No 301
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=66.86 E-value=1.8e+02 Score=30.88 Aligned_cols=34 Identities=21% Similarity=0.373 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 003487 508 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 541 (816)
Q Consensus 508 ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErda 541 (816)
...+.+++.+|+.|.+|..++.-+|-.+...+..
T Consensus 31 e~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~ 64 (230)
T PF10146_consen 31 EKCLEEYRKEMEELLQERMAHVEELRQINQDINT 64 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777666665544
No 302
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=66.86 E-value=1.6e+02 Score=35.97 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=17.3
Q ss_pred HHHHHhhhHHHHHHHHhhHHHHHHHH
Q 003487 491 ESLAAENSSLTDSYNQQRSVVNQLKS 516 (816)
Q Consensus 491 EsLA~ENsaLTd~yNqQ~~~v~qLk~ 516 (816)
|+|+=..+-||++.-+|+..|..|.-
T Consensus 121 esL~LQvsvLteqVeaQgEKIrDLE~ 146 (861)
T KOG1899|consen 121 ESLQLQVSVLTEQVEAQGEKIRDLET 146 (861)
T ss_pred hhheehHHHHHHHHHHhhhhHHHHHH
Confidence 45555566777888888877766543
No 303
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=66.83 E-value=1.3e+02 Score=29.47 Aligned_cols=124 Identities=17% Similarity=0.192 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 003487 468 HIEDLTQEKFALQRSLEASRALSESLAAENSSLT-DSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC 546 (816)
Q Consensus 468 hIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLT-d~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~ 546 (816)
-|+++--+-..|+..+.+.+.-..+.-+=.+.|. -+|=+..-...+|.+.+|..- .+|..++.=+....+-.
T Consensus 7 ~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn-------~eL~~Lk~~~~~~v~~L 79 (177)
T PF13870_consen 7 EISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERN-------KELLKLKKKIGKTVQIL 79 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 3444444444555555554444333333333333 344443333333333333333 33344444444455555
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhH
Q 003487 547 NAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL 598 (816)
Q Consensus 547 ~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlssl 598 (816)
++-.|.-..+..|...|..++....-.--+++.++..+..+...++++...+
T Consensus 80 ~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l 131 (177)
T PF13870_consen 80 THVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKL 131 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555444444444555555554444444444444
No 304
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=66.65 E-value=1.4e+02 Score=34.47 Aligned_cols=40 Identities=33% Similarity=0.415 Sum_probs=21.7
Q ss_pred hHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 003487 461 DFAALEQHIED----LTQEKFALQRSLEASRALSESLAAENSSLTDS 503 (816)
Q Consensus 461 ~faaLqqhIeD----LT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~ 503 (816)
|++.+..--+. ||..=-.|-|.| +.=.+.+|.||+.|-++
T Consensus 264 el~siRr~Cd~lP~~m~tKveelar~L---r~~I~~VarENs~LqrQ 307 (442)
T PF06637_consen 264 ELESIRRTCDHLPKIMTTKVEELARSL---RAGIERVARENSDLQRQ 307 (442)
T ss_pred hHHHHHHHHhhchHHHHHHHHHHHHHH---hhhHHHHHHhhhHHHHH
Confidence 46666654443 333333344444 44567778888776543
No 305
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=66.50 E-value=27 Score=37.81 Aligned_cols=39 Identities=23% Similarity=0.343 Sum_probs=16.7
Q ss_pred HHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhh
Q 003487 558 SEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 596 (816)
Q Consensus 558 aEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqls 596 (816)
.++..|++++..|+.+-=+..++.+.+..++..|++++.
T Consensus 242 ~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~ 280 (344)
T PF12777_consen 242 AELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLE 280 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 333444444444443333333444444444444444444
No 306
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=66.43 E-value=1.6e+02 Score=34.20 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q 003487 511 VNQLKSEMEKLQEEI 525 (816)
Q Consensus 511 v~qLk~dmEqLq~Ei 525 (816)
...|..+.+.|.+||
T Consensus 48 ~~~L~~~~~~l~~eI 62 (593)
T PF06248_consen 48 AKDLIERSKSLAREI 62 (593)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444445555555
No 307
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=65.16 E-value=2.9e+02 Score=32.73 Aligned_cols=26 Identities=35% Similarity=0.340 Sum_probs=14.8
Q ss_pred cCCCcccccCCcc-ccccccCCCCCCC
Q 003487 340 SATNKFTLGKSRA-SFLDSLNVPRASS 365 (816)
Q Consensus 340 S~~~et~~~RSRp-SFLDSlnV~Ra~~ 365 (816)
|+.-+++.+-+-| |||+-=||.|--.
T Consensus 191 s~a~esaLn~~QpqSFl~~en~~~~ve 217 (527)
T PF15066_consen 191 STAKESALNPSQPQSFLYKENVCRDVE 217 (527)
T ss_pred hhhhhhccCCCCCcchhhhcccccccc
Confidence 3334444444444 6888777776554
No 308
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=65.08 E-value=1.9e+02 Score=30.55 Aligned_cols=98 Identities=24% Similarity=0.359 Sum_probs=58.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHH--------
Q 003487 499 SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL-------- 570 (816)
Q Consensus 499 aLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~L-------- 570 (816)
+|--..+...+.+......+..|+.-+...-++++....|..+...++.--.+..-.|-.|+..|-+.+-..
T Consensus 35 ~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~ 114 (202)
T PF06818_consen 35 SLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQ 114 (202)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhc
Confidence 344445555555666666666666666666667777777777766666555666666666666666655554
Q ss_pred ---hhhhhhhHHH-----HhhhHHHHHHHHHHhh
Q 003487 571 ---RSNELKLERQ-----LENSQSEISSYKKKIS 596 (816)
Q Consensus 571 ---RS~ELKlere-----le~l~~E~~s~~rqls 596 (816)
-+++.|+++. +.+++.+++++++.|.
T Consensus 115 ~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~ 148 (202)
T PF06818_consen 115 LLSESDEAKAQRQAGEDELGSLRREVERLRAELQ 148 (202)
T ss_pred cccccchhHHhhccccccchhHHHHHHHHHHHHH
Confidence 3444454443 3446666666666555
No 309
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=64.83 E-value=1.9e+02 Score=30.52 Aligned_cols=91 Identities=19% Similarity=0.267 Sum_probs=61.6
Q ss_pred chhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 003487 458 HNEDFAALEQHIEDLTQ-------EKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLV 530 (816)
Q Consensus 458 ~~~~faaLqqhIeDLT~-------EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~ 530 (816)
+.-+++-|.|-+.|.-. |=++|--.|-..+.-.+..-.....|.+.++.....+...+.++.+...|+.-.+-
T Consensus 8 k~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLre 87 (202)
T PF06818_consen 8 KSGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLRE 87 (202)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhh
Confidence 45678888887777543 44566666666677777777777778888888888888888888777777665555
Q ss_pred HhhhhHHHHHHHhhhhhh
Q 003487 531 ELESFRNEYANVRLECNA 548 (816)
Q Consensus 531 ~le~l~aErdaArle~~a 548 (816)
.+..+..|....+.....
T Consensus 88 kl~~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 88 KLGQLEAELAELREELAC 105 (202)
T ss_pred hhhhhHHHHHHHHHHHHh
Confidence 555555555554444444
No 310
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=64.79 E-value=1.2e+02 Score=32.96 Aligned_cols=81 Identities=20% Similarity=0.243 Sum_probs=60.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHHHHh
Q 003487 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQ------RSVVNQLKSEMEKLQEEIKVQLVEL 532 (816)
Q Consensus 459 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ------~~~v~qLk~dmEqLq~Ei~aQ~~~l 532 (816)
......|++-++||.+-|-.-..-|+...++-+.=+.|.+.+-.+|-.+ ...-..|..++.+++.-++.-...-
T Consensus 71 ~gG~~~l~~~l~~L~~l~~~~~~~L~e~~~~Ld~E~~eD~~~R~kyg~rWtr~pS~~~~~~l~~~i~~~r~~L~~A~~sD 150 (339)
T cd09238 71 SGGLAALEGELPRLRELRRVCTELLAAAQESLEAEATEDSAARTQYGTAWTRPPSATLTKNLWERLNRFRVNLEQAGDSD 150 (339)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4557899999999999999999999999999999899999999888552 2233478888877777655544444
Q ss_pred hhhHHHH
Q 003487 533 ESFRNEY 539 (816)
Q Consensus 533 e~l~aEr 539 (816)
..++.-+
T Consensus 151 ~~v~~k~ 157 (339)
T cd09238 151 ESLRRRI 157 (339)
T ss_pred HHHHHHH
Confidence 4443333
No 311
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=64.68 E-value=31 Score=29.89 Aligned_cols=46 Identities=30% Similarity=0.422 Sum_probs=30.4
Q ss_pred HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 003487 488 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE 545 (816)
Q Consensus 488 ~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle 545 (816)
+=++.|..+.+.|..+.++....|+.|+.++...++| ++|+|.|+.
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~E------------AaRAN~RlD 48 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEE------------AARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
Confidence 3456777777888777777777777777666544443 566666654
No 312
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=64.46 E-value=2e+02 Score=30.72 Aligned_cols=138 Identities=10% Similarity=0.126 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHH--------------HHHHHHHHHHHHHHHH----HHH
Q 003487 469 IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVV--------------NQLKSEMEKLQEEIKV----QLV 530 (816)
Q Consensus 469 IeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v--------------~qLk~dmEqLq~Ei~a----Q~~ 530 (816)
-.+|.+-=..|.-.|..-.++++-|+.+...+.+.+=+-|-++ +.+-.-|+++-..++. ..-
T Consensus 56 F~Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~~~~~l~~ 135 (243)
T cd07666 56 FTEMNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKATDKRMKGLSE 135 (243)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666678888999999999999988877766655444333 3344455533333322 222
Q ss_pred HhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHH
Q 003487 531 ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE 610 (816)
Q Consensus 531 ~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ 610 (816)
.+...-.||-.+....-+.--+=-.+-.++-.++|-.-+.|+ +-+.+..|++.++.+++-+.++ +...++
T Consensus 136 ~f~~~Lkeyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k~~~-------dr~~~~~ev~~~e~kve~a~~~---~k~e~~ 205 (243)
T cd07666 136 QLLPVIHEYVLYSETLMGVIKRRDQIQAELDSKVEALANKKA-------DRDLLKEEIEKLEDKVECANNA---LKADWE 205 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------hHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 333334455555444433322222344444444444444332 2246666777777777666444 555666
Q ss_pred HHHHHH
Q 003487 611 ALQEEK 616 (816)
Q Consensus 611 ALQEEK 616 (816)
+-|++|
T Consensus 206 Rf~~~k 211 (243)
T cd07666 206 RWKQNM 211 (243)
T ss_pred HHHHHH
Confidence 666666
No 313
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=64.45 E-value=4.7 Score=36.76 Aligned_cols=31 Identities=26% Similarity=0.463 Sum_probs=9.3
Q ss_pred HhhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 003487 495 AENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 525 (816)
Q Consensus 495 ~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei 525 (816)
.||..|..+-+.....+.+++...+.|++.+
T Consensus 39 ~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 39 RENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 5555555555555566666666666666543
No 314
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=64.44 E-value=1.8e+02 Score=30.10 Aligned_cols=29 Identities=14% Similarity=0.126 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 003487 478 ALQRSLEASRALSESLAAENSSLTDSYNQ 506 (816)
Q Consensus 478 aLqR~L~~s~~l~EsLA~ENsaLTd~yNq 506 (816)
.|..++..-...++.+|..+..|..+-+.
T Consensus 57 t~~~~w~~i~~~~e~~a~~H~~l~~~L~~ 85 (261)
T cd07648 57 TFAPLWLVLRVSTEKLSELHLQLVQKLQE 85 (261)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666777777777777777766643
No 315
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=64.35 E-value=1.4e+02 Score=30.61 Aligned_cols=57 Identities=30% Similarity=0.341 Sum_probs=29.2
Q ss_pred HHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 003487 555 ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625 (816)
Q Consensus 555 ~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRk 625 (816)
.+-.++..||.++++|+-..- -+..+.....+.++ .|++.++++.++-....-+++.
T Consensus 128 ~~e~~i~~Le~ki~el~~~~~-------~~~~~ke~~~~ei~-------~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 128 ELESEIKELEMKILELQRQAA-------KLKEKKEAKDKEIS-------RLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666555544333 33333333333333 4556666666666666666665
No 316
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=64.14 E-value=2.4e+02 Score=31.49 Aligned_cols=66 Identities=15% Similarity=0.228 Sum_probs=29.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---h---hHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 003487 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE---N---SSLTDSYNQQRSVVNQLKSEMEKLQEEIK 526 (816)
Q Consensus 459 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~E---N---saLTd~yNqQ~~~v~qLk~dmEqLq~Ei~ 526 (816)
+......+|+.-++...=...++....+.+.-..+... . ..+.+..|-. .|..|+.+..+++.+++
T Consensus 231 ~~~~~~~~~~~~~ln~ql~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~s~--~i~~Lr~~~~~~~~~~~ 302 (458)
T COG3206 231 ARGQLLSEQQLSALNTQLQSARARLAQAEARLASLLQLLPLGREAAALREVLESP--TIQDLRQQYAQVRQQIA 302 (458)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHhccH--HHHHHHHHHHHHHHHHH
Confidence 33344445555566555555555544444433333221 1 1333444444 45555555555444433
No 317
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=63.89 E-value=1.2e+02 Score=27.82 Aligned_cols=21 Identities=33% Similarity=0.495 Sum_probs=9.5
Q ss_pred HHHHhhhHHHHHHHHHHhhhH
Q 003487 578 ERQLENSQSEISSYKKKISSL 598 (816)
Q Consensus 578 erele~l~~E~~s~~rqlssl 598 (816)
..++..++.++..++.+|...
T Consensus 87 ~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 87 KAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 318
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=63.84 E-value=1.6e+02 Score=31.04 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=34.8
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHhHHH-HHHHHhhhhhhhHHHHhhhHHHHHHHHHHhh
Q 003487 539 YANVRLECNAADERAKILASEVIGLEE-KALRLRSNELKLERQLENSQSEISSYKKKIS 596 (816)
Q Consensus 539 rdaArle~~aA~ERak~LAaEVV~LEE-k~l~LRS~ELKlerele~l~~E~~s~~rqls 596 (816)
+.+|..+....-+|+..+|..|+++=- ++-++-+.. |...++++++....-++.++.
T Consensus 83 ~~~a~~ea~~il~~a~~~a~~v~~~a~~~a~~~~~~a-~~~~e~e~~~~q~~~~~~rl~ 140 (212)
T COG3599 83 KQAAEAEADDILKRASAQAQRVFGKAQYKADRYLEDA-KIAQELEDLKRQAQVERQRLR 140 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 566888888899999999999998632 222222222 555565565555444444443
No 319
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=63.83 E-value=44 Score=36.55 Aligned_cols=86 Identities=23% Similarity=0.407 Sum_probs=58.8
Q ss_pred hhhH-HHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHh--------------hhHHHHHHHHHHhhh
Q 003487 533 ESFR-NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLE--------------NSQSEISSYKKKISS 597 (816)
Q Consensus 533 e~l~-aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele--------------~l~~E~~s~~rqlss 597 (816)
.+++ .|-++| .|-+||...-.=++.+|.+|..|--++.-|-+-|+ .++.|+..|+.++.-
T Consensus 196 ~sfK~sEeeNa-----r~V~kAnsVldRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~k 270 (311)
T PF04642_consen 196 ESFKRSEEENA-----RAVEKANSVLDRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKK 270 (311)
T ss_pred HHHhhhhhhhH-----HHHHHHHHHHHHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 4444 566663 45566666666677777777777666665555542 378888899999988
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 003487 598 LEKERQDFQSTIEALQEEKKMMQSKLRK 625 (816)
Q Consensus 598 lekeR~~lqsti~ALQEEKklLqskLRk 625 (816)
++.+-+.| +..|-+||++....++-.
T Consensus 271 meE~Qa~~--l~~aR~~errkvraqf~d 296 (311)
T PF04642_consen 271 MEEEQAEM--LRAARTEERRKVRAQFHD 296 (311)
T ss_pred ccHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 88877774 344677888877766653
No 320
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=63.78 E-value=48 Score=28.93 Aligned_cols=34 Identities=24% Similarity=0.495 Sum_probs=23.7
Q ss_pred HHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHH
Q 003487 589 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSK 622 (816)
Q Consensus 589 ~s~~rqlsslekeR~~lqsti~ALQEEKklLqsk 622 (816)
-.+++++...++-..+|...|++|.+|..-|+++
T Consensus 28 ~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 28 LAFESKLQEAEKRNRELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3456666777777778888888888887776653
No 321
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=63.65 E-value=2.2e+02 Score=30.89 Aligned_cols=92 Identities=20% Similarity=0.299 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHH-------HHHHHhHHHHHHHHhhhhhhhHHHHhhh
Q 003487 512 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL-------ASEVIGLEEKALRLRSNELKLERQLENS 584 (816)
Q Consensus 512 ~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~L-------AaEVV~LEEk~l~LRS~ELKlerele~l 584 (816)
....+-+++.|.--..++-.++..+..|..|-.+...|..|.+.. ..++--|.+|+.+.+.+.-|.+
T Consensus 115 k~~e~~f~KaQKpw~k~~kkv~~aKk~Y~~aCk~e~~A~~~~~~~~~d~~~~~~q~~K~~~k~~k~~~~~~k~~------ 188 (258)
T cd07679 115 KEAEDGFRKAQKPWAKKLKEVEAAKKAYHTACKEEKLATSREANSKADPALNPEQLKKLQDKVEKCKQDVLKTK------ 188 (258)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccCCcCCHHHHHHHHHHHHHHHHHHHHHH------
Confidence 456677888888888888899999999999888888888877532 2455556666665554444444
Q ss_pred HHHHHHHHHHhhhHHHhhh----hhHHHHHHHH
Q 003487 585 QSEISSYKKKISSLEKERQ----DFQSTIEALQ 613 (816)
Q Consensus 585 ~~E~~s~~rqlsslekeR~----~lqsti~ALQ 613 (816)
+.|+..|..|.+-|. ++.++.+.+|
T Consensus 189 ----~~Y~~~l~~L~~~~~~y~e~m~~~fe~~Q 217 (258)
T cd07679 189 ----EKYEKSLKELDQTTPQYMENMEQVFEQCQ 217 (258)
T ss_pred ----HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 445555555555553 6889999999
No 322
>PRK12704 phosphodiesterase; Provisional
Probab=63.64 E-value=3e+02 Score=32.27 Aligned_cols=14 Identities=7% Similarity=0.456 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHhhc
Q 003487 614 EEKKMMQSKLRKAS 627 (816)
Q Consensus 614 EEKklLqskLRka~ 627 (816)
+=|+.+-..+++.+
T Consensus 189 ~a~~i~~~a~qr~a 202 (520)
T PRK12704 189 KAKEILAQAIQRCA 202 (520)
T ss_pred HHHHHHHHHHHhhc
Confidence 34456666677644
No 323
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=63.48 E-value=1.3e+02 Score=28.29 Aligned_cols=46 Identities=13% Similarity=0.259 Sum_probs=34.8
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 003487 497 NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 542 (816)
Q Consensus 497 NsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaA 542 (816)
.+.+...|+.-......|+...+.++.+++....++..+..++...
T Consensus 24 ~~~v~~~~~~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~ 69 (158)
T PF03938_consen 24 VDKVFQESPAGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQ 69 (158)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777778888888888888888888887777777766664
No 324
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=63.36 E-value=1.5e+02 Score=31.19 Aligned_cols=57 Identities=14% Similarity=0.149 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHH
Q 003487 514 LKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 570 (816)
Q Consensus 514 Lk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~L 570 (816)
|.-+-+.+++.|..+...+..|.++.+.+|..-.....|=+..-.|+..|+.+-...
T Consensus 110 LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aa 166 (192)
T PF11180_consen 110 LEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAA 166 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555556666666666666666666666666666666666666666555444
No 325
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=62.98 E-value=2e+02 Score=30.01 Aligned_cols=54 Identities=19% Similarity=0.209 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 003487 477 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLV 530 (816)
Q Consensus 477 faLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~ 530 (816)
..|..+...-....+.+|..+..+....|+-...+..|..+|++.+..+..+..
T Consensus 61 gs~~~a~~~il~~~e~lA~~h~~~a~~L~~~~~eL~~l~~~~e~~RK~~ke~~~ 114 (234)
T cd07652 61 GSFSNAYHSSLEFHEKLADNGLRFAKALNEMSDELSSLAKTVEKSRKSIKETGK 114 (234)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 456777777777788888888888888877666777777777777666555543
No 326
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=62.90 E-value=2.5e+02 Score=32.83 Aligned_cols=11 Identities=27% Similarity=0.374 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 003487 464 ALEQHIEDLTQ 474 (816)
Q Consensus 464 aLqqhIeDLT~ 474 (816)
.+.|-+.||..
T Consensus 10 ~~dqr~~~~~~ 20 (459)
T KOG0288|consen 10 ENDQRLIDLNT 20 (459)
T ss_pred hhhhHHHHHHH
Confidence 34444444443
No 327
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=62.64 E-value=3.9e+02 Score=33.29 Aligned_cols=9 Identities=22% Similarity=0.169 Sum_probs=4.6
Q ss_pred ccccCCCCc
Q 003487 249 AIALGNGHS 257 (816)
Q Consensus 249 ~i~~~~g~s 257 (816)
+|.-+||+|
T Consensus 30 ~I~G~nGaG 38 (1042)
T TIGR00618 30 LICGKTGAG 38 (1042)
T ss_pred EEECCCCCC
Confidence 455555554
No 328
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=62.40 E-value=1.3e+02 Score=27.64 Aligned_cols=19 Identities=26% Similarity=0.258 Sum_probs=7.6
Q ss_pred HHHHHhhhhhhHHHHHHHH
Q 003487 538 EYANVRLECNAADERAKIL 556 (816)
Q Consensus 538 ErdaArle~~aA~ERak~L 556 (816)
.++....++.+-..||..-
T Consensus 50 ~f~~flken~~k~~rA~k~ 68 (126)
T PF13863_consen 50 KFDKFLKENEAKRERAEKR 68 (126)
T ss_pred HHHHHHHHhHHHHHHHHHH
Confidence 3333333344444444333
No 329
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=62.01 E-value=3.4e+02 Score=32.46 Aligned_cols=50 Identities=24% Similarity=0.242 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhH
Q 003487 514 LKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL 563 (816)
Q Consensus 514 Lk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~L 563 (816)
|.+++.+|..|+.-=...|..++.++|+..+.-.++.-+.+.|--|+--+
T Consensus 167 le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~ 216 (546)
T KOG0977|consen 167 LEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFL 216 (546)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33333344444444444455666666666666666666666666555443
No 330
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=61.87 E-value=42 Score=34.05 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=14.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHH
Q 003487 600 KERQDFQSTIEALQEEKKMMQSKLR 624 (816)
Q Consensus 600 keR~~lqsti~ALQEEKklLqskLR 624 (816)
.+|..+...++.|++|.+.|+..|.
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666666666555
No 331
>PF15294 Leu_zip: Leucine zipper
Probab=61.83 E-value=2.5e+02 Score=30.93 Aligned_cols=150 Identities=17% Similarity=0.226 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHhhhhHHHH
Q 003487 462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM--EKLQEEIKVQLVELESFRNEY 539 (816)
Q Consensus 462 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dm--EqLq~Ei~aQ~~~le~l~aEr 539 (816)
-+.|..-|++|..|=-.|.--|..-...+-..++|+..|...-|......+..+... ---.+++..=...++.++.|+
T Consensus 127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ 206 (278)
T PF15294_consen 127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSEL 206 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHH
Confidence 477889999999999999999999999999999999999998888777444444310 000011111111233444444
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHH
Q 003487 540 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM 619 (816)
Q Consensus 540 daArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklL 619 (816)
..+. .-+.+.--.|++.+.--+.+-|+.+.+|.....|. +++++.- +-=..|...+..-.++-|.|
T Consensus 207 ek~~----------~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeL---ekKfqqT-~ay~NMk~~ltkKn~QiKeL 272 (278)
T PF15294_consen 207 EKAL----------QDKESQQKALEETLQSCKHELLRVQEQLSLAEKEL---EKKFQQT-AAYRNMKEILTKKNEQIKEL 272 (278)
T ss_pred HHHH----------HHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhH---HHHhCcc-HHHHHhHHHHHhccHHHHHH
Confidence 4432 22223334566666667888888888876666553 3444421 11224555555566777888
Q ss_pred HHHHHh
Q 003487 620 QSKLRK 625 (816)
Q Consensus 620 qskLRk 625 (816)
..||+|
T Consensus 273 Rkrl~k 278 (278)
T PF15294_consen 273 RKRLAK 278 (278)
T ss_pred HHHhcC
Confidence 777764
No 332
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=61.63 E-value=3.9e+02 Score=32.97 Aligned_cols=117 Identities=19% Similarity=0.224 Sum_probs=76.8
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh---
Q 003487 473 TQEKFALQRSL-EASRALSESLAAENSSLTDSYNQQRSV---VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE--- 545 (816)
Q Consensus 473 T~EKfaLqR~L-~~s~~l~EsLA~ENsaLTd~yNqQ~~~---v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle--- 545 (816)
-++++.++|+- -.++...+..-..|..+++-|=-|... -..+++++|+.+++.++-...-..+..|-..+-++
T Consensus 79 kr~el~~~k~~~i~~r~~~~~~dr~~~~~~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~ 158 (716)
T KOG4593|consen 79 KRAELELTKAQSILARNYEAEVDRKHKLLTRLRQLQEALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGT 158 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555543 345666677777888888765544433 34467777777777777666666665554444433
Q ss_pred -hhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHH
Q 003487 546 -CNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS 589 (816)
Q Consensus 546 -~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~ 589 (816)
-..++++.-.+--||-.+|.++.++-+.--+.++++...+..+.
T Consensus 159 lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~ 203 (716)
T KOG4593|consen 159 LRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQ 203 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888899999988887777777777666554433
No 333
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=61.57 E-value=2.6e+02 Score=34.60 Aligned_cols=58 Identities=21% Similarity=0.286 Sum_probs=43.2
Q ss_pred HHHHHHHH-HHHHHHHHH----HHHHHhhhHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHH
Q 003487 474 QEKFALQR-SLEASRALS----ESLAAENSSLTDSYNQQRSVV---NQLKSEMEKLQEEIKVQLVE 531 (816)
Q Consensus 474 ~EKfaLqR-~L~~s~~l~----EsLA~ENsaLTd~yNqQ~~~v---~qLk~dmEqLq~Ei~aQ~~~ 531 (816)
++||.++| .+.++.... --|-+.-+.|.+-||+.-..+ -.||.+|+.|+.+++|+.+.
T Consensus 485 k~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~~~~~s 550 (762)
T PLN03229 485 QERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRAKALS 550 (762)
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhhhhc
Confidence 46888899 888875411 125556888999999987663 37999999999999866553
No 334
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=61.45 E-value=40 Score=35.78 Aligned_cols=34 Identities=26% Similarity=0.417 Sum_probs=23.2
Q ss_pred HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003487 491 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 524 (816)
Q Consensus 491 EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~E 524 (816)
++|-.+-..+...+.+|...+..|..|++.++..
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQAS 35 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455556666677777777777777777777765
No 335
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=61.40 E-value=1.9e+02 Score=29.33 Aligned_cols=18 Identities=11% Similarity=0.220 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003487 606 QSTIEALQEEKKMMQSKL 623 (816)
Q Consensus 606 qsti~ALQEEKklLqskL 623 (816)
+.-|+.+.|.-..|.-++
T Consensus 120 ~a~id~~~er~~~l~r~~ 137 (158)
T PF09486_consen 120 DARIDVCRERIDRLRRAA 137 (158)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 336
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=61.38 E-value=1.4e+02 Score=32.97 Aligned_cols=74 Identities=15% Similarity=0.148 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003487 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES 534 (816)
Q Consensus 461 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~ 534 (816)
|=++|...||=|+.+=+.|+-.|...++-.+....|-+.+-+.+-.....+..|+..+.++.+-|+-+.+++-.
T Consensus 106 ek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv~ 179 (302)
T PF09738_consen 106 EKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEKHGLVLVP 179 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeCC
Confidence 44555566666666666666666555555555666667777777777778888888888888888888777654
No 337
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=61.23 E-value=2.4e+02 Score=30.43 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=17.5
Q ss_pred HhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhh
Q 003487 531 ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 572 (816)
Q Consensus 531 ~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS 572 (816)
.+..+..++..++.+..++..+..-=.-+|+.|++++-.++-
T Consensus 215 ~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~ 256 (362)
T TIGR01010 215 LISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRK 256 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHH
Confidence 344444444444444443332222223344445544444433
No 338
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=61.14 E-value=81 Score=28.20 Aligned_cols=61 Identities=23% Similarity=0.352 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHH
Q 003487 462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 522 (816)
Q Consensus 462 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq 522 (816)
+.||++.=++-++-=-+.+.+.+.=+.+-+.-..+|.+|..++|...-.|+.|-+.+++|-
T Consensus 9 l~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs 69 (70)
T PF04899_consen 9 LSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERLS 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4677777777777777888888888888899999999999999999999999999999874
No 339
>PRK02793 phi X174 lysis protein; Provisional
Probab=61.10 E-value=65 Score=28.42 Aligned_cols=24 Identities=17% Similarity=0.400 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC
Q 003487 606 QSTIEALQEEKKMMQSKLRKASGS 629 (816)
Q Consensus 606 qsti~ALQEEKklLqskLRka~~~ 629 (816)
+..|+.|+.+-++|..||+.+..+
T Consensus 35 q~~I~~L~~~l~~L~~rl~~~~~~ 58 (72)
T PRK02793 35 EMEMAKLRDHLRLLTEKLKASQPS 58 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Confidence 445678888889999999876543
No 340
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=61.05 E-value=1.8e+02 Score=36.46 Aligned_cols=96 Identities=22% Similarity=0.269 Sum_probs=53.2
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhh
Q 003487 496 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNEL 575 (816)
Q Consensus 496 ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~EL 575 (816)
+|..++.+ +.....|.-||.++++|+.++.... -..+.+| ...|=.||+.|+++...+
T Consensus 318 knk~vvN~-d~~~~~~~~lK~ql~~l~~ell~~~--~~~~~~e--------------i~sl~~e~~~l~~~~d~~----- 375 (913)
T KOG0244|consen 318 KNKPVVNQ-DPKSFEMLKLKAQLEPLQVELLSKA--GDELDAE--------------INSLPFENVTLEETLDAL----- 375 (913)
T ss_pred cccccccc-cHHHHHHHHHHHHHHHHHHHHHhhc--cccchhH--------------HhhhhhhhhhhhhhHHHH-----
Confidence 45555544 5566667777777777777654443 0001111 122335566666555433
Q ss_pred hhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHH
Q 003487 576 KLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE 615 (816)
Q Consensus 576 Klerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEE 615 (816)
..+...-.+.+.+.-.+.--+++++-.++.+++.+++.
T Consensus 376 --~~e~~e~~s~~s~~~~~~~~~~~~k~k~~~~~~~~~~~ 413 (913)
T KOG0244|consen 376 --LQEKGEERSTLSSKSLKLTGAEKEKDKLRRRTDSCMNL 413 (913)
T ss_pred --hcchhhhhhhhhHHHHhcchhhhhHHHHHHHHHHHHHH
Confidence 33333444455555566666778888888887777654
No 341
>PF14992 TMCO5: TMCO5 family
Probab=60.83 E-value=1.3e+02 Score=33.02 Aligned_cols=105 Identities=15% Similarity=0.198 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHH-HHh--------
Q 003487 464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE--IKVQL-VEL-------- 532 (816)
Q Consensus 464 aLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~E--i~aQ~-~~l-------- 532 (816)
.|=|-|++--.....|.|.+.+...+++.--+||.-. .|.|.+. .+|.-+-.+|+.+ +-++- .++
T Consensus 22 ~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~---~~~e~~l-~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~ 97 (280)
T PF14992_consen 22 SLLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIIS---EERETDL-QELELETAKLEKENEHLSKSVQELQRKQDEQE 97 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhh---hchHHHH-HHHHhhhHHHhhhhHhhhhhhhhhhhhhcccc
Confidence 3445677666677788888888888777776666655 4556553 3333333333332 22110 000
Q ss_pred hhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhh
Q 003487 533 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 572 (816)
Q Consensus 533 e~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS 572 (816)
-.+.-|...+.+..+....+-+.+-.+|+.+|.++.+.-+
T Consensus 98 ~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~ 137 (280)
T PF14992_consen 98 TNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVED 137 (280)
T ss_pred CCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 0123344555555555666666677777777776665543
No 342
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=60.62 E-value=1.4e+02 Score=27.45 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003487 480 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 524 (816)
Q Consensus 480 qR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~E 524 (816)
+-.|+.+..-..-|..-|.+...+|..-+..++.|...+++|.+.
T Consensus 13 ~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k 57 (99)
T PF10046_consen 13 ESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQK 57 (99)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777778888999999999999999999999999888764
No 343
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=60.56 E-value=1.4e+02 Score=27.56 Aligned_cols=50 Identities=10% Similarity=0.154 Sum_probs=32.7
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHhhhhh
Q 003487 498 SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF---RNEYANVRLECN 547 (816)
Q Consensus 498 saLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l---~aErdaArle~~ 547 (816)
..+...|++....+..+...+.+|+.++.-...+++.| ..++.-+++=+.
T Consensus 6 q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~ 58 (110)
T TIGR02338 6 QNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGN 58 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhch
Confidence 34667788888888888888888777776666665555 334444444444
No 344
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.49 E-value=4.4e+02 Score=33.27 Aligned_cols=48 Identities=23% Similarity=0.367 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 003487 479 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 526 (816)
Q Consensus 479 LqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~ 526 (816)
+.-.++.-+.....|--||+.|-..|-++-+...+|+++..-|+.++.
T Consensus 669 lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 669 LDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444445577788889999999999999999999999988888776
No 345
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=60.44 E-value=2.2e+02 Score=29.64 Aligned_cols=71 Identities=23% Similarity=0.286 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHhhhhHHHHHHHhhhhhhHHHHHH
Q 003487 484 EASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE---EIKVQLVELESFRNEYANVRLECNAADERAK 554 (816)
Q Consensus 484 ~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~---Ei~aQ~~~le~l~aErdaArle~~aA~ERak 554 (816)
.+-++++..-+...+.|-+.+.+.......|+.++..|.. .-..|...+..|..|.++++.+-.+..-+++
T Consensus 36 ~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~ 109 (206)
T PF14988_consen 36 RERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAE 109 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666666666666666666666667766655443 3345677888888888887666665555543
No 346
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=60.41 E-value=87 Score=32.88 Aligned_cols=82 Identities=9% Similarity=0.099 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHH-----HHHHHHHHHHHHHHHHHHHHHhhhh
Q 003487 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSV-----VNQLKSEMEKLQEEIKVQLVELESF 535 (816)
Q Consensus 461 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~-----v~qLk~dmEqLq~Ei~aQ~~~le~l 535 (816)
....++.||+-+..-|......|.++++-=+....|-..+...+|.+... +.-++..+++.+++ ++.-
T Consensus 101 ~rKk~e~~~ek~~K~~~~~~k~~~ksKk~Ye~~Cke~~~a~~~~~~~~~~~~~ke~~K~~~Kl~K~~~~-------~~k~ 173 (240)
T cd07672 101 ARKKIELIMDAIHKQRAMQFKKTMESKKNYEQKCRDKDEAEQAVNRNANLVNVKQQEKLFAKLAQSKQN-------AEDA 173 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHH-------HHHH
Confidence 55667888999988888888999999999999998888888888765433 33344444444443 3444
Q ss_pred HHHHHHHhhhhhhH
Q 003487 536 RNEYANVRLECNAA 549 (816)
Q Consensus 536 ~aErdaArle~~aA 549 (816)
..+|..+....+..
T Consensus 174 ~~~Y~~~v~~l~~~ 187 (240)
T cd07672 174 DRLYMQNISVLDKI 187 (240)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555554444444
No 347
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=60.25 E-value=2.1e+02 Score=35.46 Aligned_cols=61 Identities=28% Similarity=0.446 Sum_probs=38.6
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHH
Q 003487 496 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKAL 568 (816)
Q Consensus 496 ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l 568 (816)
++--+.+.-|.....+.+++++.++|.. +++..|+.-+.++.+ |-.+-+++--..|||+-.
T Consensus 535 ~~~~~~~~l~~kke~i~q~re~~~~~~k---------~~l~~e~~~~i~E~~---~~~~~i~~l~~el~eq~~ 595 (809)
T KOG0247|consen 535 ESQMLSSQLNDKKEQIEQLRDEIERLKK---------ENLTTEYSIEILEST---EYEEEIEALDQELEEQKM 595 (809)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhh---------hhhhhhhhhhhhhcc---hhhhhhHHHHHHHHhhhH
Confidence 3344555555556666666666665555 677888888887777 555666666666666544
No 348
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=60.12 E-value=2.6e+02 Score=35.07 Aligned_cols=47 Identities=21% Similarity=0.269 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 003487 483 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQL 529 (816)
Q Consensus 483 L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~ 529 (816)
|+.+..+++.--+.-+.--.++-+-.-.|.+||+.+.-+|+-+.+|.
T Consensus 364 LEEQ~~VVeeA~e~~~e~e~r~e~~E~EvD~lksQLADYQQALD~QQ 410 (1480)
T COG3096 364 LEEQNEVVEEANERQEENEARAEAAELEVDELKSQLADYQQALDVQQ 410 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 44445554443322222233444445556666666666666655554
No 349
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=58.75 E-value=2e+02 Score=33.56 Aligned_cols=76 Identities=22% Similarity=0.197 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhh-hhhHHHHHHHHHHHHHHHHHH
Q 003487 548 AADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKER-QDFQSTIEALQEEKKMMQSKL 623 (816)
Q Consensus 548 aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR-~~lqsti~ALQEEKklLqskL 623 (816)
.-++++..=-.||-+|||++-+|--+.+|+-++-..+..+--++++.-.+.--++ ..+-..|-.|+|...-|++.+
T Consensus 163 ~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l~al~llv~tLee~~~~LktqI 239 (446)
T KOG4438|consen 163 RFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKILNALKLLVVTLEENANCLKTQI 239 (446)
T ss_pred hhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455788899999999988999988888888877777776666533333 334456677777766666554
No 350
>KOG3096 consensus Spliceosome-associated coiled-coil protein [Function unknown]
Probab=58.59 E-value=2.6e+02 Score=30.02 Aligned_cols=109 Identities=20% Similarity=0.218 Sum_probs=78.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHh
Q 003487 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLA--AENSSLTDSYNQ--QRSVVNQLKSEMEKLQEEIKVQLVEL 532 (816)
Q Consensus 457 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA--~ENsaLTd~yNq--Q~~~v~qLk~dmEqLq~Ei~aQ~~~l 532 (816)
.+.-|.+|-++.|. .+++.-|... -+|=.|+++|-. =..-...|..-++.+|.|++-+.-..
T Consensus 89 gkr~d~~aW~e~l~--------------ns~aqlEhq~~r~~NLeLM~k~g~eaw~~~ne~le~~l~~aqkelq~~kk~i 154 (225)
T KOG3096|consen 89 GKRNDDAAWQESLL--------------NSMAQLEHQLVRNENLELMSKHGEEAWKQYNEVLEVMLTHAQKELQKTKKLI 154 (225)
T ss_pred CccchHHHHHHHHH--------------HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677766553 3333333222 345566666532 23444567778889999999999999
Q ss_pred hhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHh
Q 003487 533 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLE 582 (816)
Q Consensus 533 e~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele 582 (816)
..+..+|-.||+. |-+|-+.|..+-|.|=-+-.+.++.++-+++++.
T Consensus 155 q~vn~~RK~~Q~~---ag~rL~~le~~wvqLv~knyeie~a~~~le~~i~ 201 (225)
T KOG3096|consen 155 QDVNRQRKHAQLT---AGERLRELEQKWVQLVSKNYEIEVACVQLETQID 201 (225)
T ss_pred HHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999976 5689999999999998888888888888877754
No 351
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=58.25 E-value=54 Score=38.17 Aligned_cols=38 Identities=21% Similarity=0.406 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 003487 586 SEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 623 (816)
Q Consensus 586 ~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskL 623 (816)
.++..+++.+.-+.+.+++++..|+.|++|.+.|+.++
T Consensus 83 KqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 83 KQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33333344444455677788899999999999999998
No 352
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=58.17 E-value=1.8e+02 Score=28.12 Aligned_cols=94 Identities=24% Similarity=0.319 Sum_probs=59.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 003487 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 539 (816)
Q Consensus 460 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aEr 539 (816)
.-+..|+..|.-+.-|.-+|+..+++-.+-=+.|++|--.||..-.+. ..+..++..|+.+ ++.+...|
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~----~~~~~~~~~L~~e-------l~~l~~ry 84 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL----RALKKEVEELEQE-------LEELQQRY 84 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-------HHHHHHHH
Confidence 346777888888888888888888887777777777777777655333 2222233333332 34455567
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHhHH
Q 003487 540 ANVRLECNAADERAKILASEVIGLE 564 (816)
Q Consensus 540 daArle~~aA~ERak~LAaEVV~LE 564 (816)
+++-.=+.+=.|+..-|=+.|..|-
T Consensus 85 ~t~LellGEK~E~veEL~~Dv~DlK 109 (120)
T PF12325_consen 85 QTLLELLGEKSEEVEELRADVQDLK 109 (120)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHH
Confidence 7776666766666655555555443
No 353
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=58.16 E-value=52 Score=32.60 Aligned_cols=67 Identities=30% Similarity=0.346 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhhhhhh--------HHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHH
Q 003487 549 ADERAKILASEVIGLEEKALRLRSNELKL--------ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE 615 (816)
Q Consensus 549 A~ERak~LAaEVV~LEEk~l~LRS~ELKl--------erele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEE 615 (816)
..-|.-.+-.+.+.+|+++..++.+.-.. +.+......|++.+++++...++|...|+.-.+.|++|
T Consensus 116 ~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 116 VIRRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56677777777777777776665443211 12223455666666666665555444444444444443
No 354
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=58.15 E-value=3.9e+02 Score=31.93 Aligned_cols=148 Identities=19% Similarity=0.284 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH--------HHHHHHHHhh------
Q 003487 469 IEDLTQEKFALQRSLEASRA-LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE--------EIKVQLVELE------ 533 (816)
Q Consensus 469 IeDLT~EKfaLqR~L~~s~~-l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~--------Ei~aQ~~~le------ 533 (816)
|.+||+|.+ ++|..+++ ...+...|-..+-++|+---..|.+|+.-+++.+. |++++.+...
T Consensus 234 lq~l~Ee~l---~al~gq~ev~~~~~~~E~~~l~eq~~~ld~AV~~Ltk~v~~~q~sL~kvl~aE~kaR~~k~~~e~sk~ 310 (531)
T PF15450_consen 234 LQELTEERL---RALQGQQEVGLGGIQSEESKLLEQCRKLDEAVAQLTKFVQQNQKSLNKVLNAEQKARDAKEKLEESKA 310 (531)
T ss_pred HHHHHHHHH---HHHHhhHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHhhH
Confidence 445666655 34444555 45555666677777777766666666666655443 2233222111
Q ss_pred ------------hh-----------HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHH
Q 003487 534 ------------SF-----------RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISS 590 (816)
Q Consensus 534 ------------~l-----------~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s 590 (816)
++ ..+.+..|--.+...+....|+..|--|+++|..|. ..|.++.+ .+...+..
T Consensus 311 eeL~~~L~~~lea~q~agkla~Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs-~rld~qEq--tL~~rL~e 387 (531)
T PF15450_consen 311 EELATKLQENLEAMQLAGKLAQQETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILALS-WRLDLQEQ--TLNLRLSE 387 (531)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHH--HHHHHHHH
Confidence 11 222333332234445555677778888888888774 44655555 45555666
Q ss_pred HHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 003487 591 YKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625 (816)
Q Consensus 591 ~~rqlsslekeR~~lqsti~ALQEEKklLqskLRk 625 (816)
.+....+.++ -.| --|..+|+|-..-+..+|.
T Consensus 388 ~~~e~~~~~r--~~l-ekl~~~q~e~~~~l~~v~e 419 (531)
T PF15450_consen 388 AKNEWESDER--KSL-EKLDQWQNEMEKHLKEVQE 419 (531)
T ss_pred HHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHH
Confidence 6665554433 333 3567888887665666663
No 355
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=58.00 E-value=2.9e+02 Score=30.29 Aligned_cols=106 Identities=19% Similarity=0.262 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHH
Q 003487 510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS 589 (816)
Q Consensus 510 ~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~ 589 (816)
.|..+...--.|+.++..|.-..+.|..=...+---+.--..=-..++.-+-.||-....+|+-.=+.-+-|..+..|..
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~ 282 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQ 282 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45555555555666666665554444321111111111111111124444555666666666666666666666777777
Q ss_pred HHHHHhhhHHHhhhhhHHHHHHHHHH
Q 003487 590 SYKKKISSLEKERQDFQSTIEALQEE 615 (816)
Q Consensus 590 s~~rqlsslekeR~~lqsti~ALQEE 615 (816)
....++..+.+.-..|+.+..+||.|
T Consensus 283 ~~~~~~~~~~~k~~kLe~LcRaLQ~e 308 (309)
T PF09728_consen 283 KLEKELEKLKKKIEKLEKLCRALQAE 308 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 77777777777777777788888765
No 356
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=57.92 E-value=4.3e+02 Score=32.24 Aligned_cols=120 Identities=23% Similarity=0.266 Sum_probs=68.4
Q ss_pred HHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----hhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHH
Q 003487 494 AAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE----LESFRNEYANVRLECNAADERAKILASEVIGLEEKALR 569 (816)
Q Consensus 494 A~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~----le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~ 569 (816)
-+++..+.++-=+-...|..|+..++--+.++-.+... +....+|+-.+-.+...|.-|+..|-.||-.|.+++..
T Consensus 188 ~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~ 267 (629)
T KOG0963|consen 188 KDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAK 267 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445554444444444555544444444444333333 55567788888888888888888888888888877664
Q ss_pred Hhhhh---------------hhhHHHHhhhH-----------HHHHHHHHHhhhHHHhhhhhHHHHHHHH
Q 003487 570 LRSNE---------------LKLERQLENSQ-----------SEISSYKKKISSLEKERQDFQSTIEALQ 613 (816)
Q Consensus 570 LRS~E---------------LKlerele~l~-----------~E~~s~~rqlsslekeR~~lqsti~ALQ 613 (816)
--+.- ...++++..|. .++.....+|++|+++=-...++|+.|.
T Consensus 268 ~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~ 337 (629)
T KOG0963|consen 268 ANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELK 337 (629)
T ss_pred hhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43221 11233333333 3444445566666666555555555554
No 357
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=57.72 E-value=2.6e+02 Score=29.76 Aligned_cols=80 Identities=28% Similarity=0.355 Sum_probs=53.2
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHH--------------HHhhhH-------HHHHHHHHHhhhHHHhhhh
Q 003487 546 CNAADERAKILASEVIGLEEKALRLRSNELKLER--------------QLENSQ-------SEISSYKKKISSLEKERQD 604 (816)
Q Consensus 546 ~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKler--------------ele~l~-------~E~~s~~rqlsslekeR~~ 604 (816)
...|.|||..=.+.++.||+....+.++---++. ++..+. ...+...|.|..|+|+|-+
T Consensus 97 LE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~Dd 176 (205)
T KOG1003|consen 97 LERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDD 176 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHH
Confidence 3557788888888899999988766554322222 222222 2234456778888888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 003487 605 FQSTIEALQEEKKMMQSKLRK 625 (816)
Q Consensus 605 lqsti~ALQEEKklLqskLRk 625 (816)
|+..+..+.++-+-++.-|-.
T Consensus 177 lE~kl~~~k~ky~~~~~eLD~ 197 (205)
T KOG1003|consen 177 LEEKLEEAKEKYEEAKKELDE 197 (205)
T ss_pred HHHhhHHHHHHHHHHHHHHHH
Confidence 888888888886666666654
No 358
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=57.63 E-value=1.6e+02 Score=32.86 Aligned_cols=64 Identities=17% Similarity=0.259 Sum_probs=47.6
Q ss_pred HHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHH
Q 003487 557 ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQ 620 (816)
Q Consensus 557 AaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLq 620 (816)
+-+|-.+-.++-...|+|--|...++.-+.|.+++++.++.|..=|--.-...+.+.||-+.|.
T Consensus 118 ~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly 181 (338)
T KOG3647|consen 118 QVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLY 181 (338)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 3444555566666778888888888888889999999999988888776677777777764443
No 359
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=57.55 E-value=2.4e+02 Score=29.36 Aligned_cols=70 Identities=20% Similarity=0.347 Sum_probs=53.7
Q ss_pred hhhHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHH-hhhHHHHHHHHHhhhhcc
Q 003487 699 PHDQMR-MIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEH-QTQRLELLTAQNMANENI 768 (816)
Q Consensus 699 p~DQlR-mI~NInaLisELa~Ereel~~AL~~es~~~s~Lk~lN~ELsrKLE~-qTQRLELltsq~ma~e~~ 768 (816)
|.++.+ +..+|.+.|++....=..|..+|........+..++|..-...|+. +.+..++.--+.++.+.+
T Consensus 172 ~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L 243 (264)
T PF06008_consen 172 PQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETL 243 (264)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 4589999999999999999999999999999999999988888874 444555555555555443
No 360
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=57.54 E-value=2.3e+02 Score=29.79 Aligned_cols=90 Identities=13% Similarity=0.154 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 003487 462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 541 (816)
Q Consensus 462 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErda 541 (816)
-..++.+++.+-..+..+...|.++++-=+....+-+++...+|.-.+..+--++++++++..+..-...+...+.+|..
T Consensus 114 ~K~~e~~~~kaqk~~~~~~~~l~kaKk~Y~~~cke~e~a~~~~~~~~~d~~~~~~eleK~~~k~~k~~~~~~~~~~~Y~~ 193 (258)
T cd07655 114 TKEAEDGFAKAQKPWAKLLKKVEKAKKAYHAACKAEKSAQKQENNAKSDTSLSPDQVKKLQDKVEKCKQEVSKTKDKYEK 193 (258)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666667788888888888888888888887544322222466777777766666677777888887
Q ss_pred HhhhhhhHHH
Q 003487 542 VRLECNAADE 551 (816)
Q Consensus 542 Arle~~aA~E 551 (816)
+....+.-..
T Consensus 194 ~l~~~n~~~~ 203 (258)
T cd07655 194 ALEDLNKYNP 203 (258)
T ss_pred HHHHHHhhhH
Confidence 7665555443
No 361
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=57.45 E-value=1.7e+02 Score=27.61 Aligned_cols=94 Identities=16% Similarity=0.125 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh----------H---HHHHHHHHHHHHHHHHHHHHH
Q 003487 464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQR----------S---VVNQLKSEMEKLQEEIKVQLV 530 (816)
Q Consensus 464 aLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~----------~---~v~qLk~dmEqLq~Ei~aQ~~ 530 (816)
+|+.+++=-.++.-.....|++++.-.+.....-..|.+..++-. - .+.....=+.+|.+.|..|.-
T Consensus 6 rL~~vl~l~~~~ee~a~~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~ 85 (147)
T PRK05689 6 ALATLLDLAEKAEEQAALQLGQARQELQQAEQQLKMLEDYRLEYRQQLNDRGSAGMTSSWWINYQQFLQQLEKAITQQRQ 85 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666555555555555533332221 1 222334448888888888888
Q ss_pred HhhhhHHHHHHHhhhhhhHHHHHHHHH
Q 003487 531 ELESFRNEYANVRLECNAADERAKILA 557 (816)
Q Consensus 531 ~le~l~aErdaArle~~aA~ERak~LA 557 (816)
.++.+..+.+.++....+|.-+-|+|-
T Consensus 86 ~v~~~~~~ve~~r~~~~~a~~~~k~lE 112 (147)
T PRK05689 86 QLTQWTQKVDNARKYWQEKKQRLEALE 112 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999888888888877777664
No 362
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=57.13 E-value=64 Score=31.98 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhH
Q 003487 512 NQLKSEMEKLQEEIKVQLVELESFR 536 (816)
Q Consensus 512 ~qLk~dmEqLq~Ei~aQ~~~le~l~ 536 (816)
..++.++++|+.|++....++++++
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~Lk 181 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALK 181 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433343333
No 363
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=57.12 E-value=70 Score=34.86 Aligned_cols=86 Identities=21% Similarity=0.220 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHH
Q 003487 520 KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLE 599 (816)
Q Consensus 520 qLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlssle 599 (816)
-|-.|-++|+-+|.+ |-|||..-.---+|.-.|--||+.|+|+-.+|+-..= +++++-.+|-
T Consensus 63 HLS~EEK~~RrKLKN----RVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~--------------~Lr~~n~~L~ 124 (292)
T KOG4005|consen 63 HLSWEEKVQRRKLKN----RVAAQTARDRKKARMEEMEYEIKDLTEENEILQNEND--------------SLRAINESLL 124 (292)
T ss_pred ccCHHHHHHHHHHHH----HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH
Confidence 344566777766654 5566666666777888889999999998777654444 4445555555
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHH
Q 003487 600 KERQDFQSTIEALQEEKKMMQSKL 623 (816)
Q Consensus 600 keR~~lqsti~ALQEEKklLqskL 623 (816)
.+-++|.+.++-+.+|-+-|...-
T Consensus 125 ~~n~el~~~le~~~~~l~~~~~~~ 148 (292)
T KOG4005|consen 125 AKNHELDSELELLRQELAELKQQQ 148 (292)
T ss_pred hhhHHHHHHHHHHHHHHHhhHHHH
Confidence 556667777777777766655443
No 364
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=56.91 E-value=68 Score=37.37 Aligned_cols=18 Identities=44% Similarity=0.645 Sum_probs=8.9
Q ss_pred hHHHhhhhhHHHHHHHHH
Q 003487 597 SLEKERQDFQSTIEALQE 614 (816)
Q Consensus 597 slekeR~~lqsti~ALQE 614 (816)
.|..+|+.++..|..||.
T Consensus 120 ql~~~~~~~~~~l~~l~~ 137 (472)
T TIGR03752 120 QLKSERQQLQGLIDQLQR 137 (472)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555555555544
No 365
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.87 E-value=3.9e+02 Score=31.47 Aligned_cols=42 Identities=29% Similarity=0.392 Sum_probs=25.0
Q ss_pred HHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHh
Q 003487 541 NVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLE 582 (816)
Q Consensus 541 aArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele 582 (816)
-++.+.++++-=...|-+|++.|-+++...|-.+-.+|-++.
T Consensus 424 ~~~~~l~a~ehv~e~l~~ei~~L~eqle~e~~~~~~le~ql~ 465 (542)
T KOG0993|consen 424 SLQQELDASEHVQEDLVKEIQSLQEQLEKERQSEQELEWQLD 465 (542)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555666777777777777766555544444433
No 366
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=56.64 E-value=11 Score=35.41 Aligned_cols=87 Identities=23% Similarity=0.489 Sum_probs=21.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhh
Q 003487 505 NQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENS 584 (816)
Q Consensus 505 NqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l 584 (816)
|.+..-+..|..++.++.+.+...+..+ +..+|+.- -.|+...+++++++.++|..-..++++++..
T Consensus 22 ~~~~~~Le~L~~dL~~~~~~L~~~Li~l--IN~dY~dF-----------v~Ls~~L~g~~~~i~~l~~~L~~~~~~v~~~ 88 (133)
T PF06148_consen 22 NRRYVSLEDLRKDLRSYSKELKNELIEL--INDDYADF-----------VSLSTNLVGMDEKIEELRKPLSQFREEVESV 88 (133)
T ss_dssp -----------------------------------------------------------------HHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHH-----------HHHHHHHccHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888888888888877776654 45555542 3478889999999988887777777777777
Q ss_pred HHHHHHHHHHhhhHHHhhhh
Q 003487 585 QSEISSYKKKISSLEKERQD 604 (816)
Q Consensus 585 ~~E~~s~~rqlsslekeR~~ 604 (816)
+.++......+...=++|..
T Consensus 89 ~~~l~~~~~~i~~~l~~~~~ 108 (133)
T PF06148_consen 89 RDELDNTQEEIEDKLEERKE 108 (133)
T ss_dssp HHS-STTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666655555544333333
No 367
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=56.28 E-value=1.6e+02 Score=26.97 Aligned_cols=35 Identities=23% Similarity=0.202 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHH
Q 003487 516 SEMEKLQEEIKVQLVELESFRNEYANVRLECNAAD 550 (816)
Q Consensus 516 ~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ 550 (816)
.=+.+|...|..|...++.+..+.+.+|....+|.
T Consensus 68 ~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~ 102 (141)
T TIGR02473 68 RFIRQLDQRIQQQQQELALLQQEVEAKRERLLEAR 102 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444443333
No 368
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=56.22 E-value=2.5e+02 Score=29.10 Aligned_cols=88 Identities=14% Similarity=0.180 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHH
Q 003487 510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS 589 (816)
Q Consensus 510 ~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~ 589 (816)
++.--+--||+|++|+..-..++.........++..++.|..-++..-.+|-.|-.-+-..|.+.-..+.-+.+...|+.
T Consensus 61 aL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~ 140 (188)
T PF05335_consen 61 ALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELA 140 (188)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444566888999888888888888999999999999999988888888999998888888888888888888777766
Q ss_pred HHHHHhhh
Q 003487 590 SYKKKISS 597 (816)
Q Consensus 590 s~~rqlss 597 (816)
.-..=|..
T Consensus 141 eK~qLLea 148 (188)
T PF05335_consen 141 EKTQLLEA 148 (188)
T ss_pred HHHHHHHH
Confidence 54333443
No 369
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=56.17 E-value=2.2e+02 Score=28.89 Aligned_cols=94 Identities=21% Similarity=0.324 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhh-hHHHHHHHHHHhhhHHHhhhhhHHHHHH
Q 003487 533 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLEN-SQSEISSYKKKISSLEKERQDFQSTIEA 611 (816)
Q Consensus 533 e~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~-l~~E~~s~~rqlsslekeR~~lqsti~A 611 (816)
++.+.|+...+.+...-.........||=.||.+.++.|..-...-+.... -..+|+..=.++.-+..+-+-++.--..
T Consensus 23 E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~q 102 (159)
T PF05384_consen 23 EQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQ 102 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhh
Q 003487 612 LQEEKKMMQSKLRKA 626 (816)
Q Consensus 612 LQEEKklLqskLRka 626 (816)
|+..+..|.-+|+++
T Consensus 103 Lr~rRD~LErrl~~l 117 (159)
T PF05384_consen 103 LRERRDELERRLRNL 117 (159)
T ss_pred HHHHHHHHHHHHHHH
No 370
>PF14739 DUF4472: Domain of unknown function (DUF4472)
Probab=56.08 E-value=53 Score=31.55 Aligned_cols=63 Identities=24% Similarity=0.426 Sum_probs=43.2
Q ss_pred HHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 003487 556 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625 (816)
Q Consensus 556 LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRk 625 (816)
..+|++.|..++|++-+..|-++-.-+.....+......+..++++|+. |++|-..|+.+.+.
T Consensus 26 ~EaE~FELk~~vL~lE~rvleLel~~~~~~~~~~~~~~~~~~~~~~~~~-------l~~e~~~l~~~~~a 88 (108)
T PF14739_consen 26 HEAEKFELKNEVLRLENRVLELELHGDKAAPQIADLRHRLAEAQEDRQE-------LQEEYVSLKKNYQA 88 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 4678999999998887766655555555555666666666666666665 55666666766663
No 371
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=55.75 E-value=1.9e+02 Score=27.49 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=29.8
Q ss_pred HHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHH
Q 003487 556 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE 615 (816)
Q Consensus 556 LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEE 615 (816)
.-.=+..|.+.+.+.+ ..+..+..+++.++..+-.+.++|..+..+++.-..+
T Consensus 69 ~~~fl~~L~~~i~~q~-------~~v~~~~~~ve~~r~~~~ea~~~~k~~ekLker~~~~ 121 (146)
T PRK07720 69 YQQFVTNLERTIDHYQ-------LLVMQAREQMNRKQQDLTEKNIEVKKYEKMKEKKQEM 121 (146)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666665543 4444555556666666666666666666665554433
No 372
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=55.71 E-value=3.3e+02 Score=34.00 Aligned_cols=137 Identities=22% Similarity=0.252 Sum_probs=81.3
Q ss_pred HHHHHHhhhHHHHHH---HHhhH----------------HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHH
Q 003487 490 SESLAAENSSLTDSY---NQQRS----------------VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAAD 550 (816)
Q Consensus 490 ~EsLA~ENsaLTd~y---NqQ~~----------------~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ 550 (816)
++-|-.||.-|.|+. |||-- ++-.|++.--.||.+++..+-.++.+..--+-...-+.--.
T Consensus 389 ~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~ 468 (861)
T PF15254_consen 389 MQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQK 468 (861)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHH
Confidence 467777777777653 55422 34455555556666666666555555422222222222222
Q ss_pred HHHHHHHHHHHhHHHHHHH----HhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHH-------HHHHHHHHHH
Q 003487 551 ERAKILASEVIGLEEKALR----LRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTI-------EALQEEKKMM 619 (816)
Q Consensus 551 ERak~LAaEVV~LEEk~l~----LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti-------~ALQEEKklL 619 (816)
+--|.|..+.-.=+..+++ +-.+.-|++-|++++..++..|+=++++++||-+-|.-+| ++|+|=-|-|
T Consensus 469 ~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~L 548 (861)
T PF15254_consen 469 EENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTL 548 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHH
Confidence 2233344433333333332 3345667778899999999999999999999998887654 5566666666
Q ss_pred HHHHHhh
Q 003487 620 QSKLRKA 626 (816)
Q Consensus 620 qskLRka 626 (816)
|.-..+.
T Consensus 549 Q~Sma~l 555 (861)
T PF15254_consen 549 QNSMAKL 555 (861)
T ss_pred HHHHHHH
Confidence 6665553
No 373
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=55.66 E-value=3.8e+02 Score=30.98 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 003487 708 NINALISELALEKEELVQALSSELA 732 (816)
Q Consensus 708 NInaLisELa~Ereel~~AL~~es~ 732 (816)
+.-.-++|--.+|...+..|..|..
T Consensus 392 ~rl~~lt~~Li~KQ~~lE~l~~ek~ 416 (511)
T PF09787_consen 392 SRLTQLTESLIQKQTQLESLGSEKN 416 (511)
T ss_pred HHHhhccHHHHHHHHHHHHHHhhhh
Confidence 3333455555577777777666544
No 374
>PRK10698 phage shock protein PspA; Provisional
Probab=55.33 E-value=2.6e+02 Score=29.08 Aligned_cols=48 Identities=10% Similarity=0.283 Sum_probs=24.3
Q ss_pred HhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Q 003487 581 LENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 628 (816)
Q Consensus 581 le~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRka~~ 628 (816)
+..+..++...+..+..|...-..|+.-|..++..+..|..|.+.|-+
T Consensus 101 ~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a 148 (222)
T PRK10698 101 IATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASS 148 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444445555555556666666666664444
No 375
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=55.04 E-value=3.2e+02 Score=30.00 Aligned_cols=161 Identities=20% Similarity=0.279 Sum_probs=85.1
Q ss_pred hhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH----HhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 003487 460 EDFAALEQHIEDLTQEKF---ALQRSLEASRALSESLA----AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL 532 (816)
Q Consensus 460 ~~faaLqqhIeDLT~EKf---aLqR~L~~s~~l~EsLA----~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~l 532 (816)
++-..|++.|. .||- ++...=.-..+++.+|. .|.++|.|=-..-+-.+.++.+...++=.-+..++..|
T Consensus 54 e~sr~L~~LIk---~EK~vi~s~e~~are~~~~A~~L~~WG~~edddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~L 130 (271)
T PF13805_consen 54 ELSRKLQRLIK---AEKSVIRSLESAARERKAAAKQLSEWGEQEDDDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHL 130 (271)
T ss_dssp TTCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44477888774 4553 22222233455666665 34556666666666666666655555555566666666
Q ss_pred hhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhh-hhhhHHHHhhhHHHHHHHHHHhhhHH--HhhhhhHHHH
Q 003487 533 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSN-ELKLERQLENSQSEISSYKKKISSLE--KERQDFQSTI 609 (816)
Q Consensus 533 e~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~-ELKlerele~l~~E~~s~~rqlssle--keR~~lqsti 609 (816)
..++. ..........|=+.|..|+.-|+.|-- .+. -..||.||-.+..+.--.+++|.-+. |=|..+..-+
T Consensus 131 K~IR~----~E~sl~p~R~~r~~l~d~I~kLk~k~P--~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f 204 (271)
T PF13805_consen 131 KSIRN----REESLQPSRDRRRKLQDEIAKLKYKDP--QSPKLVVLEQELVRAEAENLVAEAQLSNIKRQKLKEAYSLKF 204 (271)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-T--TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----HHHHHhHHHHHhHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHH
Confidence 66632 111223345555667777766654311 000 02223333333333333334443332 2255677788
Q ss_pred HHHHH--HHHHHHHHHHhhcCC
Q 003487 610 EALQE--EKKMMQSKLRKASGS 629 (816)
Q Consensus 610 ~ALQE--EKklLqskLRka~~~ 629 (816)
+||+| ||..+-.+.=+....
T Consensus 205 ~Al~E~aEK~~Ila~~gk~Ll~ 226 (271)
T PF13805_consen 205 DALIERAEKQAILAEYGKRLLE 226 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 99997 999888887765553
No 376
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=54.77 E-value=2.1e+02 Score=30.26 Aligned_cols=7 Identities=29% Similarity=0.425 Sum_probs=2.6
Q ss_pred HHHhhhH
Q 003487 579 RQLENSQ 585 (816)
Q Consensus 579 rele~l~ 585 (816)
.+++.++
T Consensus 196 ~~l~~l~ 202 (301)
T PF14362_consen 196 AELDTLQ 202 (301)
T ss_pred HHHHHHH
Confidence 3333333
No 377
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=54.53 E-value=1.1e+02 Score=32.95 Aligned_cols=9 Identities=22% Similarity=0.184 Sum_probs=5.1
Q ss_pred hhcCCCCcc
Q 003487 625 KASGSGKSI 633 (816)
Q Consensus 625 ka~~~gk~~ 633 (816)
+|+-.|...
T Consensus 187 ~AP~dG~V~ 195 (370)
T PRK11578 187 VAPMAGEVT 195 (370)
T ss_pred ECCCCcEEE
Confidence 466666653
No 378
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=54.39 E-value=2.8e+02 Score=29.13 Aligned_cols=115 Identities=20% Similarity=0.330 Sum_probs=65.2
Q ss_pred HHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHh
Q 003487 492 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 571 (816)
Q Consensus 492 sLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LR 571 (816)
++-.-=+.|-.+|..+..++.-++.-=|-|...++.+...+.....-|.+.+ .+|.+.-..--.|+-.+.. ...
T Consensus 87 s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK---~hAeekL~~ANeei~~v~~---~~~ 160 (207)
T PF05010_consen 87 SLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALK---AHAEEKLEKANEEIAQVRS---KHQ 160 (207)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH---HhH
Confidence 3444445677888888888888888777777777777766655544444433 2333222222222222211 122
Q ss_pred hhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHH
Q 003487 572 SNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL 612 (816)
Q Consensus 572 S~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~AL 612 (816)
.+.++|+-.|.-..-.+.++++.|..-.||..+|-.+.|-|
T Consensus 161 ~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeL 201 (207)
T PF05010_consen 161 AELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDEL 201 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344444444445556777777777777777777666554
No 379
>PRK15396 murein lipoprotein; Provisional
Probab=54.16 E-value=46 Score=30.28 Aligned_cols=48 Identities=13% Similarity=0.369 Sum_probs=40.3
Q ss_pred HHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 003487 580 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 627 (816)
Q Consensus 580 ele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRka~ 627 (816)
+++.|..++..+..++..+..|-+.++.-+.+-+||-.+.-.||-+.+
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~ 73 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQA 73 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777778888888888888888899999999999999999988754
No 380
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=54.03 E-value=2.2e+02 Score=27.80 Aligned_cols=29 Identities=21% Similarity=0.384 Sum_probs=21.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 003487 598 LEKERQDFQSTIEALQEEKKMMQSKLRKA 626 (816)
Q Consensus 598 lekeR~~lqsti~ALQEEKklLqskLRka 626 (816)
+.+|--+|.-++--+.+-.+.+..||+.+
T Consensus 82 ~q~EldDLL~ll~Dle~K~~kyk~rLk~L 110 (136)
T PF04871_consen 82 AQSELDDLLVLLGDLEEKRKKYKERLKEL 110 (136)
T ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHc
Confidence 45566677778777777778888888843
No 381
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=53.90 E-value=2.5e+02 Score=33.07 Aligned_cols=21 Identities=38% Similarity=0.411 Sum_probs=15.8
Q ss_pred hHHHHhhhHHHHHHHHHHhhh
Q 003487 577 LERQLENSQSEISSYKKKISS 597 (816)
Q Consensus 577 lerele~l~~E~~s~~rqlss 597 (816)
.||||..++...++++||-++
T Consensus 359 aekql~~Ake~~eklkKKrss 379 (575)
T KOG4403|consen 359 AEKQLKEAKEMAEKLKKKRSS 379 (575)
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 477888888888888777654
No 382
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=53.43 E-value=72 Score=29.20 Aligned_cols=44 Identities=27% Similarity=0.460 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhhhH
Q 003487 711 ALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQR 754 (816)
Q Consensus 711 aLisELa~Ereel~~AL~~es~~~s~Lk~lN~ELsrKLE~qTQR 754 (816)
.=|..|...|.+|-+.|-....+|.+|+..|.|+++||...-..
T Consensus 39 ~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~ 82 (89)
T PF13747_consen 39 EEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIET 82 (89)
T ss_pred HHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455677899999999999999999999999999999865443
No 383
>PRK14154 heat shock protein GrpE; Provisional
Probab=53.27 E-value=2.4e+02 Score=29.78 Aligned_cols=50 Identities=10% Similarity=0.170 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHH
Q 003487 511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEV 560 (816)
Q Consensus 511 v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEV 560 (816)
+..|+.+++.|+++++...-.+--+.+|.+|+|-+...-.+.++..|.+-
T Consensus 54 ~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~ 103 (208)
T PRK14154 54 REKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQ 103 (208)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666665555566667788887777666666666666543
No 384
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=52.72 E-value=1.4e+02 Score=27.89 Aligned_cols=63 Identities=16% Similarity=0.318 Sum_probs=32.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHH
Q 003487 506 QQRSVVNQLKSEMEKLQEEIKVQLVELESF--RNEYANVRLECNAADERAKILASEVIGLEEKAL 568 (816)
Q Consensus 506 qQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l--~aErdaArle~~aA~ERak~LAaEVV~LEEk~l 568 (816)
..+..+.+|.+.+....+-+..-...++.+ +.+...-+.+.+.-..+-+.|++.+-.++..+-
T Consensus 32 a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 32 AKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLD 96 (106)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 334555555555555555444444455555 444445555555555555556666655544443
No 385
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=52.55 E-value=49 Score=28.65 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhc
Q 003487 605 FQSTIEALQEEKKMMQSKLRKAS 627 (816)
Q Consensus 605 lqsti~ALQEEKklLqskLRka~ 627 (816)
.+..|+.|+.+-++|..||+.+.
T Consensus 30 Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 30 QQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567788999999999999765
No 386
>PRK04325 hypothetical protein; Provisional
Probab=52.27 E-value=1.1e+02 Score=27.10 Aligned_cols=47 Identities=17% Similarity=0.328 Sum_probs=30.1
Q ss_pred HHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 003487 560 VIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 627 (816)
Q Consensus 560 VV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRka~ 627 (816)
++.||.|+.- .|..++.|+..+-.-.+ .|+.|+.+-++|..||+.+.
T Consensus 11 i~~LE~klAf-------QE~tIe~LN~vv~~Qq~--------------~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 11 ITELEIQLAF-------QEDLIDGLNATVARQQQ--------------TLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhc
Confidence 6667766653 25556666655444333 45677788888888888654
No 387
>PRK10869 recombination and repair protein; Provisional
Probab=52.17 E-value=4.5e+02 Score=30.80 Aligned_cols=36 Identities=14% Similarity=0.003 Sum_probs=15.9
Q ss_pred HhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhh
Q 003487 561 IGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 596 (816)
Q Consensus 561 V~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqls 596 (816)
-.+|+|+..++.=.-|--..++.+..-...+++++.
T Consensus 299 ~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~ 334 (553)
T PRK10869 299 AELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQ 334 (553)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 345555555543333333344444444444444443
No 388
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=52.15 E-value=23 Score=35.39 Aligned_cols=85 Identities=22% Similarity=0.343 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 003487 463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 542 (816)
Q Consensus 463 aaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaA 542 (816)
-+|++|+..|+.+|-.|...+ ..|..||..|-+.+-.....+-+=+.++.+|.++++--.--+...+.|-+..
T Consensus 11 ~~l~~~L~~l~~erqkl~~qv-------~rL~qEN~~Lr~el~~tq~~lq~se~~~~~Lpee~~~Lqfl~~~~r~d~~~~ 83 (181)
T PF09311_consen 11 RALQQHLQSLEAERQKLRAQV-------RRLCQENDWLRGELANTQQKLQESEQEVAQLPEEVKHLQFLVSIKREDLIES 83 (181)
T ss_dssp HHHHHHHHHHHHCCHHHHT-------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchHHHHHHHHHhcccccccc
Confidence 367889999998887665544 4477788888887765544442223444444444333222233445566666
Q ss_pred hhhhhhHHHHHH
Q 003487 543 RLECNAADERAK 554 (816)
Q Consensus 543 rle~~aA~ERak 554 (816)
+..+.++.++.+
T Consensus 84 ~~~~e~~e~~~~ 95 (181)
T PF09311_consen 84 RTAAEHEEEKLR 95 (181)
T ss_dssp ------------
T ss_pred chhhhhhhhccc
Confidence 666666666655
No 389
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=51.88 E-value=3.9e+02 Score=29.94 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=14.8
Q ss_pred HHhHHHHHhhHHHHHHHHHhhhHH
Q 003487 732 AQSSKLKDLNNELSRKLEHQTQRL 755 (816)
Q Consensus 732 ~~~s~Lk~lN~ELsrKLE~qTQRL 755 (816)
..+.+||..|-||+.|.-.-..||
T Consensus 278 ~l~dQLK~qNQEL~ski~ELE~rL 301 (307)
T PF10481_consen 278 QLLDQLKAQNQELRSKINELELRL 301 (307)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 345677777887777765433333
No 390
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=51.59 E-value=2.6e+02 Score=30.08 Aligned_cols=66 Identities=18% Similarity=0.261 Sum_probs=46.3
Q ss_pred HHHHHHhhhHHHHHHHHhhH-HHH-----------HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHH
Q 003487 490 SESLAAENSSLTDSYNQQRS-VVN-----------QLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 555 (816)
Q Consensus 490 ~EsLA~ENsaLTd~yNqQ~~-~v~-----------qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~ 555 (816)
++.+|.+...+.+.|+.|-. .+. .-.+...++++|+.....+|+..+--|+.+-..+..|.++++.
T Consensus 79 t~~~A~~~~~~ae~l~~~i~~~l~~l~~~~~~~~Kk~~e~~~~lq~el~~~~~eL~ksKK~Y~~~~~~~~~ar~K~~~ 156 (264)
T cd07654 79 LDAVAQSRQNRCEAYRRYISEPAKTGRSAKEQQLKKCTEQLQRAQAEVQQTVRELSKSRKTYFEREQVAHLAREKAAD 156 (264)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 56677777777777765422 222 2334557788899999999999999998877777777666654
No 391
>PRK00295 hypothetical protein; Provisional
Probab=51.32 E-value=1.2e+02 Score=26.59 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 003487 606 QSTIEALQEEKKMMQSKLRKAS 627 (816)
Q Consensus 606 qsti~ALQEEKklLqskLRka~ 627 (816)
+..|+.|+.+-++|..||+.+.
T Consensus 32 q~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 32 QRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3456777888888888888654
No 392
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=51.29 E-value=6.3e+02 Score=32.22 Aligned_cols=159 Identities=23% Similarity=0.224 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------------HHHHHHHHhhHHHHHHHHHHHHHHH
Q 003487 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENS-----------------SLTDSYNQQRSVVNQLKSEMEKLQE 523 (816)
Q Consensus 461 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENs-----------------aLTd~yNqQ~~~v~qLk~dmEqLq~ 523 (816)
+...|.||+-|||.+--.|.+..+.=.+=++-|...++ +.-..--.++..+...+.-+++|.-
T Consensus 621 d~~~~~q~~~EL~~q~~~L~ee~~af~~~v~~l~~~~e~~~~~ls~~~~~~r~~~~~e~~~Ee~r~~le~~~~~t~El~~ 700 (984)
T COG4717 621 DLKKLMQKKAELTHQVARLREEQAAFEERVEGLLAVLEAQFIDLSTLFCVQRLRVAAELQKEEARLALEGNIERTKELND 700 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHH
Q ss_pred HHHHHHHHhhhhHHHHHHHhhhhhhHHHHH-HHHHHHHHhHHHHHHHHhhhhhhhHH-HHhhhHHHHHHHHHHhhhHHHh
Q 003487 524 EIKVQLVELESFRNEYANVRLECNAADERA-KILASEVIGLEEKALRLRSNELKLER-QLENSQSEISSYKKKISSLEKE 601 (816)
Q Consensus 524 Ei~aQ~~~le~l~aErdaArle~~aA~ERa-k~LAaEVV~LEEk~l~LRS~ELKler-ele~l~~E~~s~~rqlssleke 601 (816)
++++++... +.|....=--+++++|=+ +.-|+++-.|-+.|-++++-+--++. .-+.+..-.+...+-+- ++|
T Consensus 701 ~L~ae~~~~---~kei~dLfd~~~~~~ed~F~e~A~~~qq~~q~~srl~~~~aql~~v~~~~~eL~~~~~~~~~~--e~E 775 (984)
T COG4717 701 ELRAELELH---RKEILDLFDCGTADTEDAFREAAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELK--EEE 775 (984)
T ss_pred HHHHHHHHH---HHHHHHHHhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhh--hHH
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 003487 602 RQDFQSTIEALQEEKKMMQSKLR 624 (816)
Q Consensus 602 R~~lqsti~ALQEEKklLqskLR 624 (816)
=..+..+++++-||---|+.+++
T Consensus 776 ~~~lEe~~d~~~ee~~el~a~v~ 798 (984)
T COG4717 776 LALLEEAIDALDEEVEELHAQVA 798 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 393
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=50.74 E-value=3.9e+02 Score=29.68 Aligned_cols=62 Identities=23% Similarity=0.335 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 003487 466 EQHIEDLTQEKFALQRSLEASRALS-----ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV 527 (816)
Q Consensus 466 qqhIeDLT~EKfaLqR~L~~s~~l~-----EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~a 527 (816)
=||.|..-++=+.|=..|+.-.+=. .+|.+.-..+-+.-.+|...|.+|+++++.|+.+|+.
T Consensus 40 yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~ 106 (301)
T PF06120_consen 40 YQNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKN 106 (301)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566655555555555555443322 2344444444455555666666666666666665543
No 394
>PF05929 Phage_GPO: Phage capsid scaffolding protein (GPO) serine peptidase; InterPro: IPR009228 This entry is represented by Bacteriophage P2, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacteriophage capsid scaffolding protein (GpO) and some related bacterial sequences. GpO is thought to function in both the assembly of proheads and the cleavage of GpN [].; GO: 0019069 viral capsid assembly
Probab=50.71 E-value=63 Score=35.16 Aligned_cols=62 Identities=19% Similarity=0.324 Sum_probs=37.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHH
Q 003487 458 HNEDFAALEQHIEDLTQEKFALQRSLEA-SRALSESLAAENSSLTDSYNQQRSVVNQLKSEME 519 (816)
Q Consensus 458 ~~~~faaLqqhIeDLT~EKfaLqR~L~~-s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmE 519 (816)
+++.|+.|++.|+.+.+.--.+.-.++. -.+....+++...++..+..++...+.+|+..|+
T Consensus 190 ~~~~~~~~~~ave~ia~~~~~~~~~~~~~ls~~~~~~~~~~~~l~~~~~~~~~~f~~L~~~L~ 252 (276)
T PF05929_consen 190 DDEQFADLQQAVEAIAEQQQELEEAFEEQLSEQETQVAELKQELKEQHEALTEDFAALKEKLS 252 (276)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhh
Confidence 4788999999999887765554444432 2344445555555555555555555555555543
No 395
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=50.50 E-value=92 Score=27.65 Aligned_cols=35 Identities=14% Similarity=0.260 Sum_probs=16.9
Q ss_pred HHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 003487 590 SYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 624 (816)
Q Consensus 590 s~~rqlsslekeR~~lqsti~ALQEEKklLqskLR 624 (816)
.++.++.++..||..|..-++.-..--..+-+||+
T Consensus 25 ~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk 59 (65)
T TIGR02449 25 LLRAQEKTWREERAQLLEKNEQARQKVEAMITRLK 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444444555555555444444444444455554
No 396
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=50.33 E-value=1.7e+02 Score=30.14 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhhhh
Q 003487 552 RAKILASEVIGLEEKALRLRSNELK 576 (816)
Q Consensus 552 Rak~LAaEVV~LEEk~l~LRS~ELK 576 (816)
+--.+-.+++.||.+|.++|-...+
T Consensus 190 kn~eie~a~~~Le~ei~~l~~~~~~ 214 (221)
T PF05700_consen 190 KNLEIEVACEELEQEIEQLKRKAAE 214 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555555555444443
No 397
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.90 E-value=89 Score=37.56 Aligned_cols=119 Identities=20% Similarity=0.268 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhh
Q 003487 517 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 596 (816)
Q Consensus 517 dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqls 596 (816)
++|.|++++.-++..|.+-+.|.-|- .-|| =--|.+-.|+|..-+ .|++-.|..++.||.+++--|.
T Consensus 47 ~letLrddLrlylksl~~aMieLIN~----DYAD--FVnLStnLVgld~al-------n~i~qpL~qlreei~s~rgsV~ 113 (705)
T KOG2307|consen 47 DLETLRDDLRLYLKSLQNAMIELIND----DYAD--FVNLSTNLVGLDDAL-------NKIEQPLNQLREEIKSTRGSVG 113 (705)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhh----hHHH--HHhhhhhhccHHHHH-------HHHHhHHHHHHHHHHHHHhhHH
Confidence 45566666666666666665555440 0011 113455556665544 4556677777777777776666
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccC--CCCCcccccccccc
Q 003487 597 SLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSID--FGKTAASTVNASTS 648 (816)
Q Consensus 597 slekeR~~lqsti~ALQEEKklLqskLRka~~~gk~~~--~~kns~~~kDASTS 648 (816)
.++..=+.-.+...+++|-|+.|+..+.=..+-+|... +.+|+..+.|.-|+
T Consensus 114 ea~~alr~q~se~~~~Re~k~~lldl~~v~~~ieKL~k~L~s~psk~q~~~a~s 167 (705)
T KOG2307|consen 114 EAERALRQQCSELCSNREKKIELLDLIYVLVAIEKLSKMLLSPPSKEQQDGATS 167 (705)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccch
Confidence 55443333345556667777777777665555566422 35555554444444
No 398
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=49.85 E-value=6e+02 Score=31.57 Aligned_cols=163 Identities=18% Similarity=0.193 Sum_probs=96.2
Q ss_pred ccccccccccCCchhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHH
Q 003487 446 SIENQHGFYSTKHNEDFAALEQH------IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEME 519 (816)
Q Consensus 446 s~e~~~~F~s~~~~~~faaLqqh------IeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmE 519 (816)
++..++-++..+.+.--+..+.- .-....-+.-..|-.+..+...+-|.++|+.+.+-=|.-...+.++...++
T Consensus 400 ~~p~~~~~i~~d~k~~~aki~~~~vg~~~~~~i~~ll~~~~r~~qg~r~~~~~L~~~~s~~~k~~~t~~~~~~~~~a~~d 479 (732)
T KOG4250|consen 400 SLPKVVPYIDQDKKASLAKIQLRKVGLEALREIDTLLEDQERLFQGLRAVMELLVRTNSELLKVKTTSRSALQQLLAKLD 479 (732)
T ss_pred CCCCCccchhccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 55667777777776666655532 112222233334555666888999999999999988888888877777666
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhhhh---HHHHHHHHHHHHHhHHHHHHHHhhhhhhh-HHHHhhhHHHHHHHHHHh
Q 003487 520 KLQEEIKVQLVELESFRNEYANVRLECNA---ADERAKILASEVIGLEEKALRLRSNELKL-ERQLENSQSEISSYKKKI 595 (816)
Q Consensus 520 qLq~Ei~aQ~~~le~l~aErdaArle~~a---A~ERak~LAaEVV~LEEk~l~LRS~ELKl-erele~l~~E~~s~~rql 595 (816)
..-.- +.+-.+.+-.+++... +.+++.+.|...+.+|..+..+-.....+ .-..+.++.+++.|.++-
T Consensus 480 ~~~~~--------~~~~~~~~~e~~~i~~a~d~~~~l~r~aev~~~~~~~~~~i~~~~~~~~~l~~~~i~~~~s~~~~r~ 551 (732)
T KOG4250|consen 480 FMHSS--------IQIDLKKDSEQQEIGIASDKRTKLLREAEVKSDIEACIKVIQWELEDLMSLDTEIIHSEKSPYKRRQ 551 (732)
T ss_pred HHHHH--------hhcchhccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhchHHHhcccCCccccc
Confidence 55443 4444444555544443 45666677777777777665553332221 112334555666664332
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 003487 596 SSLEKERQDFQSTIEALQEEKKMMQSKLRKA 626 (816)
Q Consensus 596 sslekeR~~lqsti~ALQEEKklLqskLRka 626 (816)
. ..++.|+++-+-|...+++-
T Consensus 552 ~----------~~l~~l~~~~~elyk~~~k~ 572 (732)
T KOG4250|consen 552 G----------AQLESLLERARELYKQLKKR 572 (732)
T ss_pred H----------HHHHHHHHHHHHHHHHHHhc
Confidence 2 35556666666666666643
No 399
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=49.18 E-value=3.5e+02 Score=28.62 Aligned_cols=14 Identities=21% Similarity=0.584 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 003487 510 VVNQLKSEMEKLQE 523 (816)
Q Consensus 510 ~v~qLk~dmEqLq~ 523 (816)
.+..|+.++..++.
T Consensus 143 ~i~~l~~~~~~~~~ 156 (301)
T PF14362_consen 143 EIAALQAEIDQLEK 156 (301)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 400
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=49.01 E-value=3.4e+02 Score=28.48 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 003487 608 TIEALQEEKKMMQSKLRKA 626 (816)
Q Consensus 608 ti~ALQEEKklLqskLRka 626 (816)
.++..+-+.+.++.+|.++
T Consensus 180 ~~~~~~~~~~~~~~~l~~a 198 (327)
T TIGR02971 180 DVDLAQAEVKSALEAVQQA 198 (327)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666653
No 401
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=48.87 E-value=4e+02 Score=29.23 Aligned_cols=69 Identities=26% Similarity=0.295 Sum_probs=57.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 003487 458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLV 530 (816)
Q Consensus 458 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~ 530 (816)
..+.+++|.+-..|+-.|...++|.+...+.-++.|..|...+....|. ....++.+|.|=+|++.|--
T Consensus 20 ~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k----~~~~k~KLE~LCRELQk~Nk 88 (309)
T PF09728_consen 20 PEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSK----AILAKSKLESLCRELQKQNK 88 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999999999999999999999888774 44667777777777666653
No 402
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=48.85 E-value=6.7e+02 Score=31.87 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003487 463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE 523 (816)
Q Consensus 463 aaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~ 523 (816)
..|...++.+.-.++-.+|+-....++.--+ .-.+.--.+-=++...+..-|+++|+++-
T Consensus 526 ~~L~~~~e~~dp~~~r~~~~~~~~~~v~~~~-~~v~~E~krilaRk~liE~rKe~~E~~~~ 585 (988)
T KOG2072|consen 526 ESLSKVVEELDPVIIRNSRAKKKEGAVTNYL-KNVDKEHKRILARKSLIEKRKEDLEKQNV 585 (988)
T ss_pred HHHHHHHHhhChHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3577788888888888888776665554332 22233334444556666666666666543
No 403
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.53 E-value=2.5e+02 Score=32.99 Aligned_cols=91 Identities=20% Similarity=0.281 Sum_probs=54.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH---HHhhhhhhHHHHH----------------HHHHHHH
Q 003487 500 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA---NVRLECNAADERA----------------KILASEV 560 (816)
Q Consensus 500 LTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErd---aArle~~aA~ERa----------------k~LAaEV 560 (816)
+-+..-+|+.+..+-++++-+|+-++..-+++.+++++=-. ....++.+|--|. ..+-.++
T Consensus 22 ~ee~~~rq~a~~qa~q~dl~~lrtql~~a~aeme~ikaia~vsE~tk~EaV~av~rq~~eeVaSlqa~~k~~~~~ye~q~ 101 (542)
T KOG0993|consen 22 KEEDLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKAIATVSEPTKSEAVSAVVRQEEEEVASLQASQKSPNPTYECQM 101 (542)
T ss_pred hhhHHHhccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhccccchhHHHhcCCCccHHHHH
Confidence 34556677888888889999999888888888888753110 1112222222221 1122333
Q ss_pred Hh-HHHHHHHHhhhhhhhHHHHhhhHHHHHH
Q 003487 561 IG-LEEKALRLRSNELKLERQLENSQSEISS 590 (816)
Q Consensus 561 V~-LEEk~l~LRS~ELKlerele~l~~E~~s 590 (816)
-. ||-...++--++=|+++|+..+..-.++
T Consensus 102 ~~~leqertq~qq~~e~~erEv~~l~~llsr 132 (542)
T KOG0993|consen 102 CQNLEQERTQLQQNEEKLEREVKALMELLSR 132 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33 6666666777777778877776655544
No 404
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=48.52 E-value=68 Score=33.89 Aligned_cols=59 Identities=24% Similarity=0.291 Sum_probs=41.3
Q ss_pred HHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 003487 560 VIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625 (816)
Q Consensus 560 VV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRk 625 (816)
|..||..+-.-....+-|..+|+.++.||.++|-+++ .++--|+.|++.-|-|+..|-+
T Consensus 42 ~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E-------~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 42 VTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQ-------ENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555543334457889999999999999999999 3445566667666666655554
No 405
>PRK14143 heat shock protein GrpE; Provisional
Probab=48.46 E-value=3.2e+02 Score=29.24 Aligned_cols=47 Identities=19% Similarity=0.300 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHH
Q 003487 513 QLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASE 559 (816)
Q Consensus 513 qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaE 559 (816)
+|+.+++.|+++++...-.+--+.+|.+|+|-+...-.++++..|.+
T Consensus 71 ~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~ 117 (238)
T PRK14143 71 QLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKC 117 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433344455666666666655555555555544
No 406
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=48.15 E-value=73 Score=29.36 Aligned_cols=49 Identities=18% Similarity=0.330 Sum_probs=34.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHH
Q 003487 501 TDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 556 (816)
Q Consensus 501 Td~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~L 556 (816)
+-+.|+-...|..|-..+.||+++ +++++.+..+|+.++..|.+|.-.-
T Consensus 24 ~aK~dqlss~vq~LnAkv~qLe~d-------v~a~~~~~qAAk~eaarAn~rldn~ 72 (78)
T COG4238 24 NAKIDQLSSDVQTLNAKVDQLEND-------VNAMRSDVQAAKDEAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 445667777777777777777765 4566777777777777777776543
No 407
>PF05400 FliT: Flagellar protein FliT; InterPro: IPR008622 This entry represents the bacterial flagellar FliT family of dual-function proteins. Together with FlgN, FliT has been proposed to act as a substrate-specific export chaperone, facilitating the incorporation of the enterobacterial hook-associated axial proteins (HAPs) FlgK/FlgL and FliD into the growing flagellum []. FliT has also been shown to act as a transcriptional regulator in Salmonella typhimurium [].; GO: 0019861 flagellum; PDB: 3A7M_A 3H3M_B 3NKZ_C 2G42_A 2FZT_B.
Probab=47.92 E-value=1.4e+02 Score=25.02 Aligned_cols=51 Identities=22% Similarity=0.258 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHH------------HHHHhHHHHHhhHHHHHHHHHhhhHHHHHHHH
Q 003487 711 ALISELALEKEELVQALSS------------ELAQSSKLKDLNNELSRKLEHQTQRLELLTAQ 761 (816)
Q Consensus 711 aLisELa~Ereel~~AL~~------------es~~~s~Lk~lN~ELsrKLE~qTQRLELltsq 761 (816)
+-+.+|..+|+.++..|.. ....+.++.+++.++...++....+|.-...+
T Consensus 11 e~l~~l~~~R~~ll~~l~~~~~~~~~~~~~~~~~~l~~Il~~d~~i~~ll~~~~~~l~~~l~~ 73 (84)
T PF05400_consen 11 EELEELLDERQELLERLFEEQAALSPPEQEELRELLRRILELDQEIRALLQARRDELKQELRQ 73 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccccCChhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888899999977765 33556678888999999998888888765543
No 408
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.58 E-value=5.5e+02 Score=30.52 Aligned_cols=119 Identities=22% Similarity=0.231 Sum_probs=64.8
Q ss_pred hhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh-
Q 003487 459 NEDFAALEQ---HIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES- 534 (816)
Q Consensus 459 ~~~faaLqq---hIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~- 534 (816)
.-.|++||+ |.++.+.|.--+++..++ +.+-|.+= ++ ..-..-+++..+...|+.|-++++-.+..|.+
T Consensus 254 ~v~~~ales~~sq~~e~~selE~llklker---l~e~l~dg-ea---yLaKL~~~l~~~~~~~~~ltqqwed~R~pll~k 326 (521)
T KOG1937|consen 254 LVEYKALESKRSQFEEQNSELEKLLKLKER---LIEALDDG-EA---YLAKLMGKLAELNKQMEELTQQWEDTRQPLLQK 326 (521)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhHHH---HHHhcCCh-Hh---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 456777774 556666554444444333 23333221 22 22233456777778888888887777766543
Q ss_pred ---hHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhH
Q 003487 535 ---FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQ 585 (816)
Q Consensus 535 ---l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~ 585 (816)
++.+.++--.+... --|-+.|-.++-.+-+++.+--.---+|.++++.+-
T Consensus 327 kl~Lr~~l~~~e~e~~e-~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp 379 (521)
T KOG1937|consen 327 KLQLREELKNLETEDEE-IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLP 379 (521)
T ss_pred HHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCC
Confidence 46666664444444 346666777776666666532122224455555543
No 409
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=47.54 E-value=1.1e+02 Score=33.05 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=33.0
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 003487 497 NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR 536 (816)
Q Consensus 497 NsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~ 536 (816)
+..+.++|++....-.+|...|+.|+.+|+.|...|+.+.
T Consensus 175 ~~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n 214 (259)
T PF08657_consen 175 LPGAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMN 214 (259)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3377778888888888888899999999999988888873
No 410
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=47.37 E-value=88 Score=31.45 Aligned_cols=8 Identities=13% Similarity=0.534 Sum_probs=4.2
Q ss_pred cccccccc
Q 003487 448 ENQHGFYS 455 (816)
Q Consensus 448 e~~~~F~s 455 (816)
.+|..||.
T Consensus 87 ~~f~syY~ 94 (184)
T PF05791_consen 87 TTFQSYYD 94 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34555654
No 411
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=47.07 E-value=1.9e+02 Score=25.85 Aligned_cols=60 Identities=22% Similarity=0.328 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 003487 479 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE 538 (816)
Q Consensus 479 LqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aE 538 (816)
|++-|.-=+.|-|+|-.-|.++-++|+.-..-=...+.+.+-+...++..+..++.++.|
T Consensus 8 l~~LL~EN~~LKealrQ~N~~Mker~e~l~~wqe~~~~e~~~~~~kf~Ear~lv~~L~~E 67 (68)
T PF11577_consen 8 LQELLQENQDLKEALRQNNQAMKERFEELLAWQEKQKEEREFLERKFQEARELVERLKEE 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 556666677788889999999999999888777777777777777777777777766654
No 412
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=47.07 E-value=62 Score=30.26 Aligned_cols=34 Identities=6% Similarity=0.009 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 003487 511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL 544 (816)
Q Consensus 511 v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArl 544 (816)
..+++.+++.++++++.....++.|+.|.+..+.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4445555555555555555555556666555444
No 413
>PRK04406 hypothetical protein; Provisional
Probab=46.62 E-value=1.5e+02 Score=26.60 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC
Q 003487 606 QSTIEALQEEKKMMQSKLRKASG 628 (816)
Q Consensus 606 qsti~ALQEEKklLqskLRka~~ 628 (816)
+..|+.|+.+-++|..||+.+..
T Consensus 38 q~~I~~L~~ql~~L~~rl~~~~~ 60 (75)
T PRK04406 38 QLLITKMQDQMKYVVGKVKNMDS 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 34567788888888999986554
No 414
>PRK09793 methyl-accepting protein IV; Provisional
Probab=46.50 E-value=4.9e+02 Score=29.60 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=45.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 003487 459 NEDFAALEQHIEDLTQEKFALQR----SLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 526 (816)
Q Consensus 459 ~~~faaLqqhIeDLT~EKfaLqR----~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~ 526 (816)
.|||..|-..+..|...=-.+.. .-..-...+++++.-+..+..+.++|...+.+....|+++-..+.
T Consensus 242 ~dE~g~l~~sln~m~~~L~~~i~~i~~~~~~~~~~~~eia~~~~~ls~~~e~qa~~~~~~~~s~~~~~~~~~ 313 (533)
T PRK09793 242 RNEITAIFASLKTMQQALRGTVSDVRKGSQEMHIGIAEIVAGNNDLSSRTEQQAASLAQTAASMEQLTATVG 313 (533)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666555443222222 222233456778888889999999999999999999988877544
No 415
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=46.50 E-value=3.5e+02 Score=27.95 Aligned_cols=148 Identities=16% Similarity=0.223 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 003487 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 539 (816)
Q Consensus 460 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aEr 539 (816)
.....|++.+.+|.+-+-...--|...+++-+.-+.+.+.+-.+| -..=....-...-..|+.+|......|+....=-
T Consensus 22 ~g~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~-g~~W~r~~S~~~~~~l~~~l~~~~~~L~~A~~sD 100 (296)
T PF13949_consen 22 GGIEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKY-GERWTRPPSSELNASLRKELQKYREYLEQASESD 100 (296)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-TTTCGSS-HHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcCCCcHhhHHHHHHHHHHHHHHHHHHHhhH
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHH
Q 003487 540 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA 611 (816)
Q Consensus 540 daArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~A 611 (816)
.-.+.......+--+.|+.-.-.|+..+-.. +..+. .+......+++.+-.++..+.++|..+..-+..
T Consensus 101 ~~~~~~~~~~~~~l~~L~~~~~~L~~~lp~~--~~~~~-~~~~~~i~~L~~ll~~l~~l~~eR~~~~~~lk~ 169 (296)
T PF13949_consen 101 SQLRSKLESIEENLELLSGPIEELEASLPSS--SPSDS-PQVSEVIRQLRELLNKLEELKKEREELLEQLKE 169 (296)
T ss_dssp HHHHHHHHHHHHHHHHHTSSHHHHHHHS--B-----SS-GSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCChhhHHhhCCCC--Ccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 416
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=46.21 E-value=3.9e+02 Score=28.40 Aligned_cols=89 Identities=20% Similarity=0.243 Sum_probs=52.8
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHH
Q 003487 536 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE 615 (816)
Q Consensus 536 ~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEE 615 (816)
..+.-.-...|.+|..+-..|=.++..-=..|..+ ++.|..+..++...--++-++.+.|+.+..+++.|+.=
T Consensus 52 ~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~-------R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i 124 (291)
T PF10475_consen 52 SREISEKSDSFFQAMSSVQELQDELEEALVICKNL-------RRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQI 124 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555567777776666665555555555544 44444555555555555666667777777777777744
Q ss_pred H--HHHHHHHHhhcCCCC
Q 003487 616 K--KMMQSKLRKASGSGK 631 (816)
Q Consensus 616 K--klLqskLRka~~~gk 631 (816)
| ...+.+|+.+...|.
T Consensus 125 ~~v~~~~~~l~~ll~~~d 142 (291)
T PF10475_consen 125 KTVQQTQSRLQELLEEGD 142 (291)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 4 445566666655444
No 417
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=45.81 E-value=4.3e+02 Score=32.39 Aligned_cols=51 Identities=22% Similarity=0.271 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003487 483 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE 533 (816)
Q Consensus 483 L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le 533 (816)
+++|+++......+-+.|..+-+++...+.+.+.+++++++|++.....++
T Consensus 499 i~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~ 549 (771)
T TIGR01069 499 IEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELE 549 (771)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666666666666666665555544444433
No 418
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=45.79 E-value=95 Score=34.81 Aligned_cols=72 Identities=21% Similarity=0.357 Sum_probs=41.7
Q ss_pred HHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 003487 554 KILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 626 (816)
Q Consensus 554 k~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRka 626 (816)
+.|-.++-.|.+++.+++..--++++.-. ....-.....++..+.+.+..|...++.|+++.+.|+..|++.
T Consensus 337 ~~l~~~~~~~~~~l~~l~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 337 EELEEELEELKEELEKLKKNLKKLKKLKK-QGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444555555555554444222222111 1111123345566666777788888999999999999999876
No 419
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=45.78 E-value=4.3e+02 Score=28.78 Aligned_cols=226 Identities=16% Similarity=0.232 Sum_probs=134.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003487 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRS---VVNQLKSEMEKLQEEIKVQLVELESF 535 (816)
Q Consensus 459 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~---~v~qLk~dmEqLq~Ei~aQ~~~le~l 535 (816)
.+.+..|++-|++|..-+-.-..-|....++-+.=+.|.+.+-.+|-++.. ....|+.++.+++.-+..-...-..+
T Consensus 71 ~~gi~~l~~~~~~L~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~G~~~~S~~~~~~l~~~~~k~~~~L~~A~~sD~~l 150 (337)
T cd09234 71 PDTIKNLVEAMGELSDVYQDVEAMLNEIESLLEEEELQEKEFQEAVGKRGSSIAHVTELKRELKKYKEAHEKASQSNTEL 150 (337)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 477889999999999999999999999998888888889999999987621 24556666666666544444443444
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHH
Q 003487 536 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE 615 (816)
Q Consensus 536 ~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEE 615 (816)
..-++. ...--+.|+...-.|+..+=..+. +-+. ..+....+++ .+..-|+.|..|
T Consensus 151 ~~~~~~-------~~~~l~lL~~~~~~l~~~iPs~~~--~~~~-~~~~~v~~Lr--------------~ll~kl~~lk~e 206 (337)
T cd09234 151 HKAMNL-------HIANLKLLAGPLDELQKKLPSPSL--LDRP-EDEAIEKELK--------------RILNKVNEMRKQ 206 (337)
T ss_pred HHHHHH-------HHHHHHHHcCcHHHHHhhCCCccc--cCCc-ccHHHHHHHH--------------HHHHHHHHHHHH
Confidence 333322 112223444433334433321110 1000 1111111122 233355666677
Q ss_pred HHHHHHHHHhhcCCCCccCCCCCcccccccccccccccccCccccCCCCCCccCCCCCcCCCCCCCCCCccccccccccc
Q 003487 616 KKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLA 695 (816)
Q Consensus 616 KklLqskLRka~~~gk~~~~~kns~~~kDASTSTdDLai~dd~~~sSn~etlds~s~~s~~~s~~pllpe~G~~~l~g~~ 695 (816)
++.+...||.... .||+ .+. ||...|. .|
T Consensus 207 R~~l~~~Lk~k~~--------------------~DDI----~~~----------------------ll~~~~~-~~---- 235 (337)
T cd09234 207 RRSLEQQLRDAIH--------------------EDDI----TSK----------------------LVTTTGG-DM---- 235 (337)
T ss_pred HHHHHHHHHHHhh--------------------cCCc----hHH----------------------HHHhcch-hH----
Confidence 7777777875332 1222 000 0011110 01
Q ss_pred ccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhhhHHHHHH
Q 003487 696 VNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLT 759 (816)
Q Consensus 696 vsIp~DQlRmI~NInaLisELa~Ereel~~AL~~es~~~s~Lk~lN~ELsrKLE~qTQRLELlt 759 (816)
-.|=+.+|+..+..-..|.+--..++.|+.+|...-......+....+..++-|..-|+|+.+-
T Consensus 236 e~lf~~eL~k~~~~~~~l~~~~~~Q~~ll~~i~~an~~f~~~r~~~~~~~~~Re~~l~~L~~ay 299 (337)
T cd09234 236 EDLFKEELKKHDQLVNLIEQNLAAQENILKALTEANAKYAPVRKALSETKQKRESTISSLIASY 299 (337)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 1355678888888888888888889999998888777776655554556777777777777654
No 420
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=44.93 E-value=3e+02 Score=26.75 Aligned_cols=20 Identities=25% Similarity=0.473 Sum_probs=7.9
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 003487 604 DFQSTIEALQEEKKMMQSKL 623 (816)
Q Consensus 604 ~lqsti~ALQEEKklLqskL 623 (816)
+|+.-+-..|--|..|.-||
T Consensus 83 ~l~~r~~k~~~dka~lel~l 102 (107)
T PF09304_consen 83 ELESRLLKAQKDKAILELKL 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHH
Confidence 33333333343344444333
No 421
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=44.89 E-value=5.1e+02 Score=29.30 Aligned_cols=56 Identities=25% Similarity=0.217 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHhhhh-hhhHHHH---hhhHHHHHHHHHHhhhHHHhhh
Q 003487 547 NAADERAKILASEVIGLEEKALRLRSNE-LKLERQL---ENSQSEISSYKKKISSLEKERQ 603 (816)
Q Consensus 547 ~aA~ERak~LAaEVV~LEEk~l~LRS~E-LKlerel---e~l~~E~~s~~rqlsslekeR~ 603 (816)
.+|.||-+.-..|-..+|+.-...|-.+ +||.+-. ...+ |.++-+++.+-|..|-+
T Consensus 348 eeaeerqraeekeq~eaee~~ra~kr~egvkllkf~fekiear-eerrkqkeeeklk~e~q 407 (445)
T KOG2891|consen 348 EEAEERQRAEEKEQKEAEELERARKREEGVKLLKFEFEKIEAR-EERRKQKEEEKLKAEEQ 407 (445)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHH
Confidence 4556666665566666666544333332 4443322 2233 22344445554544443
No 422
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=44.78 E-value=2.3e+02 Score=25.20 Aligned_cols=65 Identities=18% Similarity=0.334 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 003487 479 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR 543 (816)
Q Consensus 479 LqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaAr 543 (816)
|.+-|.---+...+|-.|-+.|...=-.....|..|+..+..++.++......++....+.+..+
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555566677777777777777777777777777777766666555555555544433
No 423
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=44.67 E-value=4.7e+02 Score=28.90 Aligned_cols=7 Identities=14% Similarity=0.553 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 003487 481 RSLEASR 487 (816)
Q Consensus 481 R~L~~s~ 487 (816)
-.|++++
T Consensus 99 ~~l~~A~ 105 (390)
T PRK15136 99 QAFEKAK 105 (390)
T ss_pred HHHHHHH
Confidence 3344443
No 424
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=44.51 E-value=5.9e+02 Score=29.93 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 003487 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ 506 (816)
Q Consensus 461 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNq 506 (816)
|=.+.++..+.+.+++..-|-.|.+-.+-++.|-.+--.|...|-+
T Consensus 117 e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~q 162 (499)
T COG4372 117 EREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQ 162 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777787777777776666666665555555554433
No 425
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=44.37 E-value=4.1e+02 Score=30.34 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=12.4
Q ss_pred HHHHHHHHHhHHHHHhhHHHHHHHH
Q 003487 725 QALSSELAQSSKLKDLNNELSRKLE 749 (816)
Q Consensus 725 ~AL~~es~~~s~Lk~lN~ELsrKLE 749 (816)
.....+...+.++-.-|.+|.+-|.
T Consensus 290 ~~v~~eL~~~~~~l~~~~el~~~L~ 314 (445)
T PRK13428 290 DEVEDQLFRFSRILDAQPRLAILLS 314 (445)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHh
Confidence 3444444455554445555555444
No 426
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=44.07 E-value=5.4e+02 Score=30.02 Aligned_cols=123 Identities=25% Similarity=0.319 Sum_probs=68.4
Q ss_pred cCCcccccccCCCCCCCcCCCCccccCCCccccccCCCcccc-----ccccccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 003487 406 TGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSI-----ENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQ 480 (816)
Q Consensus 406 ~~~~s~~~~sn~~s~~d~s~~psv~~~n~v~~~~~~~dE~s~-----e~~~~F~s~~~~~~faaLqqhIeDLT~EKfaLq 480 (816)
.+.|..--.+.+|+-|.-. +|-+-++.-| ..+-+|. +-.-|...-..|+---.
T Consensus 44 DGsFlVRdAstm~GdYTLt-------------l~k~g~~KLikI~h~DgKyGF~---d~ltf~SVVelIn~yr~------ 101 (464)
T KOG4637|consen 44 DGSFLVRDASTMQGDYTLT-------------LRKGGNNKLIKIVHRDGKYGFS---DPLTFNSVVELINHYRN------ 101 (464)
T ss_pred CCcEEeeccccCCCceEEE-------------EecCCccceeeeEEecCccCCC---CchhhHHHHHHHHHHhh------
Confidence 4555555555588877654 2223333333 3466675 44556655555554333
Q ss_pred HHHHHHHHHHHHHHHhhhHHH--------HHHHHhh--------HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 003487 481 RSLEASRALSESLAAENSSLT--------DSYNQQR--------SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL 544 (816)
Q Consensus 481 R~L~~s~~l~EsLA~ENsaLT--------d~yNqQ~--------~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArl 544 (816)
++|+.=|.+|- +.=|.|- .+=.+++..+++|| +--.+++.+..||+++.+
T Consensus 102 ----------~SL~~yN~~LDvrLlyPVs~~r~dq~~kp~~~~~~~~~~~~~~~q~lq----~~~~~~er~~~~y~~~~q 167 (464)
T KOG4637|consen 102 ----------ESLAQYNPKLDVRLLYPVSRYRQDQNVKPDFNINAVGKKLREYHQQLQ----EKSLEYERLYEEYTRTSQ 167 (464)
T ss_pred ----------hHHHhhCcccceeeechHHHhhhccccCCCcchhhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 45555555541 1222221 22234555555554 456778899999999999
Q ss_pred hhhhHHHHHHHHHHHHHhHHHHHHH
Q 003487 545 ECNAADERAKILASEVIGLEEKALR 569 (816)
Q Consensus 545 e~~aA~ERak~LAaEVV~LEEk~l~ 569 (816)
|... |.+|.|+++=..|+.+
T Consensus 168 Elq~-----k~t~~~afn~tikife 187 (464)
T KOG4637|consen 168 ELQM-----KRTAIEAFNETIKIFE 187 (464)
T ss_pred HHHH-----HHHHHHHhhhHHHHHH
Confidence 8765 4567777665555543
No 427
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=43.96 E-value=4.3e+02 Score=28.20 Aligned_cols=14 Identities=29% Similarity=0.416 Sum_probs=8.4
Q ss_pred HHhhhHHHHHHHHh
Q 003487 494 AAENSSLTDSYNQQ 507 (816)
Q Consensus 494 A~ENsaLTd~yNqQ 507 (816)
-.+-..+...|+++
T Consensus 154 ~~~~~~~~~~Y~~~ 167 (297)
T PF02841_consen 154 LKELDELEKEYEQE 167 (297)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhc
Confidence 33445566677776
No 428
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=43.86 E-value=4.1e+02 Score=27.97 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHH
Q 003487 510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILAS 558 (816)
Q Consensus 510 ~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAa 558 (816)
......++-.+|++++.....+|+..+..|+.+-.++..|.+.......
T Consensus 106 ~rK~~~~~~~kl~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~k~e~a~~ 154 (237)
T cd07657 106 AKKAYQEERQQIDEQYKKLTDEVEKLKSEYQKLLEDYKAAKSKFEEAVV 154 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555667778888888899999999999999999998887755533
No 429
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.40 E-value=7e+02 Score=30.51 Aligned_cols=161 Identities=19% Similarity=0.162 Sum_probs=76.4
Q ss_pred ccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 003487 448 ENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV 527 (816)
Q Consensus 448 e~~~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~a 527 (816)
+-||+=|=-.++-=-+++|.||.-|-..|-.-...|+-.++=-+.+-.--+.|.+||-+-.-.-+-|-..|.+|.+-.
T Consensus 569 ~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~-- 646 (741)
T KOG4460|consen 569 QVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSF-- 646 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc--
Confidence 445555555555555667777776665554433334444444444444445566666543333333333333333311
Q ss_pred HHHHhhh-hHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhH
Q 003487 528 QLVELES-FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQ 606 (816)
Q Consensus 528 Q~~~le~-l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lq 606 (816)
...+-. ..+|||= .+|..-+.--.+.|++-+-.+-.+.-+ +|.-.+-..+. .-+++-+--++.|.-+|
T Consensus 647 -~~~lp~l~~AErdF-k~Elq~~~~~~~~L~~~iET~~~~~~K--------Q~~H~~~v~~a-l~K~~Y~l~~~Q~~~iq 715 (741)
T KOG4460|consen 647 -HSELPVLSDAERDF-KKELQLIPDQLRHLGNAIETVTMKKDK--------QQQHMEKVLSA-LPKPTYILSAYQRKCIQ 715 (741)
T ss_pred -cccCCcchhHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhh-ccCCcccccHHHHHHHH
Confidence 111111 2667765 233345555555565554444433333 22211111110 00122222267788899
Q ss_pred HHHHHHHHHHHHHHH
Q 003487 607 STIEALQEEKKMMQS 621 (816)
Q Consensus 607 sti~ALQEEKklLqs 621 (816)
+++..|-++-...-.
T Consensus 716 siL~~L~~~i~~~~k 730 (741)
T KOG4460|consen 716 SILKELGEHIREMVK 730 (741)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999888877654433
No 430
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=43.35 E-value=3.9e+02 Score=27.58 Aligned_cols=60 Identities=17% Similarity=0.274 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003487 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 524 (816)
Q Consensus 461 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~E 524 (816)
++..|+--|..|-.-|...-..++..+.+-+.+..+ ......--..+.+|+..|.+||++
T Consensus 87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~----~~~~~~~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEK----EAELKELESEIKELEMKILELQRQ 146 (190)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHhhhhHHHHHHHHHHHHHHHHHH
Confidence 567777788888888887777777777776666665 112233345666777777766664
No 431
>COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]
Probab=43.23 E-value=3.5e+02 Score=31.94 Aligned_cols=140 Identities=22% Similarity=0.318 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 003487 463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 542 (816)
Q Consensus 463 aaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaA 542 (816)
+-++..++|.-.++|.-.+-.+.+.++-+-|..+-..|......|...+.++...-|++++.-..=.+-+-.+...-.++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~~i~~~~~~~~~~~~~~~~~r~~g~ll~an~~~i~~~~~~v 340 (564)
T COG1293 261 ADLEKLFNEALDEKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKGELLYANLQLIEEGLKSV 340 (564)
T ss_pred chhhHHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 34444555666666666666665555666666666666666666666666666555555554222111111111111111
Q ss_pred h-------hhhhhHHHHHHHHHHHHHh-HHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhh
Q 003487 543 R-------LECNAADERAKILASEVIG-LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQ 603 (816)
Q Consensus 543 r-------le~~aA~ERak~LAaEVV~-LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~ 603 (816)
+ .++...-+=.+... +... .-.+-.+|+.....+.++++....++.-|++...++++-..
T Consensus 341 ~~~~~~~~~~i~i~l~~~~~~~-~~~~~~~~~~~klk~~~~~~~~~~~~~~~~~~y~e~~~~~lek~~~ 408 (564)
T COG1293 341 RLADFYGNEEIKIELDKSKTPS-ENAQRYFKKYKKLKGAKVNLDRQLSELKEAIAYYESAKTALEKAEG 408 (564)
T ss_pred ehhhhccccceeeccCcCcccc-hhhHHHhhhhhhccCceeehhhhhhhhHHHHHHHHHHHHHHHhccc
Confidence 1 11111111111111 1111 11223344445555666677777777777777777766665
No 432
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=42.91 E-value=5.4e+02 Score=32.78 Aligned_cols=58 Identities=26% Similarity=0.378 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHHhhHH---HHHHHHHhhhHHHHHHHHHhhhh
Q 003487 709 INALISELALEKEELVQALSSELAQSSK--LKDLNNE---LSRKLEHQTQRLELLTAQNMANE 766 (816)
Q Consensus 709 InaLisELa~Ereel~~AL~~es~~~s~--Lk~lN~E---LsrKLE~qTQRLELltsq~ma~e 766 (816)
|.-+..|++.-|+.|..-|-.+.+..-. |+....| -..-|--...-||-.++|.||..
T Consensus 1213 ~dh~~de~ekdreqLi~kLNcekdeaiq~alkafe~e~ei~E~al~eKsk~Lenqiakg~a~d 1275 (1424)
T KOG4572|consen 1213 IDHDRDEIEKDREQLIIKLNCEKDEAIQGALKAFEDEPEIRECALKEKSKALENQIAKGMAED 1275 (1424)
T ss_pred HHhhHHHHHHHHHHHHHHHhccHHHHHhhhHHHhccCHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 5556677777777777777766655432 2222111 11123334556777778888544
No 433
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=42.91 E-value=3.7e+02 Score=27.15 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=40.1
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 003487 498 SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL 544 (816)
Q Consensus 498 saLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArl 544 (816)
+.+-++|-+-..++.+...+|-++++.+..-..++.+-+.|.|.|--
T Consensus 4 e~a~rny~~a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~ 50 (136)
T PF11570_consen 4 EVAERNYEAARAELDQADEDIATLQERQASAEQALNGRRSELDQANK 50 (136)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45678888889999999999999999998888888888888888543
No 434
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=42.86 E-value=2.6e+02 Score=29.80 Aligned_cols=48 Identities=19% Similarity=0.352 Sum_probs=22.3
Q ss_pred HHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 003487 494 AAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 541 (816)
Q Consensus 494 A~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErda 541 (816)
.+||..+..+-+--...+...+.++|.++.+..+=..-.+.+.-|||+
T Consensus 150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~Eydr 197 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDR 197 (216)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 334444444444444444444444444444444444444444445544
No 435
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=42.61 E-value=2.4e+02 Score=26.27 Aligned_cols=29 Identities=14% Similarity=0.324 Sum_probs=25.0
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHhHHHHHH
Q 003487 540 ANVRLECNAADERAKILASEVIGLEEKAL 568 (816)
Q Consensus 540 daArle~~aA~ERak~LAaEVV~LEEk~l 568 (816)
++.+.-|...+.-=+.++.||+.+|+++.
T Consensus 36 ~~y~~~~~~iT~~f~~~S~ei~~ie~~L~ 64 (97)
T PF14966_consen 36 EAYRQLCHEITQEFSAISKEILAIEAELR 64 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77888889999999999999999988764
No 436
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=42.49 E-value=54 Score=36.34 Aligned_cols=43 Identities=26% Similarity=0.442 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 003487 583 NSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625 (816)
Q Consensus 583 ~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRk 625 (816)
++...+..++.+++.++..-.++...+..++.+.+.|..+|+.
T Consensus 141 ~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~D 183 (370)
T PF02994_consen 141 SLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDD 183 (370)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555555666666663
No 437
>PRK14148 heat shock protein GrpE; Provisional
Probab=42.47 E-value=1.6e+02 Score=30.60 Aligned_cols=49 Identities=16% Similarity=0.197 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHH
Q 003487 511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASE 559 (816)
Q Consensus 511 v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaE 559 (816)
+.+|+.+++.|+.+++...-.+--+.+|.+|+|-+...-.+.++..|.+
T Consensus 42 ~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~ 90 (195)
T PRK14148 42 LERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIE 90 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555544444444555667777665555555555554443
No 438
>PRK14140 heat shock protein GrpE; Provisional
Probab=42.34 E-value=1.2e+02 Score=31.41 Aligned_cols=50 Identities=8% Similarity=0.230 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHH
Q 003487 510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASE 559 (816)
Q Consensus 510 ~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaE 559 (816)
.+++|+.+++.|+.+++...-.+--+.+|.+|+|-+...-.+.++..|.+
T Consensus 38 ~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~ 87 (191)
T PRK14140 38 LLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQ 87 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555666555555555566677777776666666666655544
No 439
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=42.11 E-value=1.3e+02 Score=27.25 Aligned_cols=29 Identities=41% Similarity=0.479 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003487 468 HIEDLTQEKFALQRSLEASRALSESLAAE 496 (816)
Q Consensus 468 hIeDLT~EKfaLqR~L~~s~~l~EsLA~E 496 (816)
.|-+|.+++-.++..++..++---.++.+
T Consensus 30 ~i~~ld~~~r~l~~~~e~lr~~rN~~sk~ 58 (108)
T PF02403_consen 30 EIIELDQERRELQQELEELRAERNELSKE 58 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 44456666666666665555444444433
No 440
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=42.07 E-value=4.3e+02 Score=31.50 Aligned_cols=68 Identities=21% Similarity=0.127 Sum_probs=37.2
Q ss_pred CcccCCCCcccCCCCCCCccCCCCCCCCCCCCCccccCCCccccCCCCCCCcccccCCCcccccCCccccccccCCCCCC
Q 003487 285 STTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRAS 364 (816)
Q Consensus 285 ~s~~f~~~~~~~~~e~k~s~S~~~L~s~~~t~~~~Sdstg~~~d~~~Ssnh~P~~S~~~et~~~RSRpSFLDSlnV~Ra~ 364 (816)
++|.|---|++|.. -|+++.||=|+--. +| -.| +++..-..+++--..|+-+|--||+.
T Consensus 225 ~~~k~a~f~~nnld--~~~~~~~y~~~~~~---------~~---------~~~-~~~~~~~~~~~~a~~~~~~~~~p~~~ 283 (518)
T PF10212_consen 225 GTGKIAAFFSNNLD--FFTSSSGYGPKGAT---------TF---------TNP-LSAECMLQYKKRAAAYMSSLKKPCPE 283 (518)
T ss_pred hhHHHHHHHhcchH--HhhcccccCCCccc---------cc---------CCc-cchHHHHHHHHHHHHHHHHhcCCCCc
Confidence 34444444444433 27888888776521 11 123 33333344566666788888655555
Q ss_pred CCCccccCCccc
Q 003487 365 SGTLFEQTEPER 376 (816)
Q Consensus 365 ~~t~~~~tEp~k 376 (816)
+ +||.|-=.
T Consensus 284 s---vpy~~a~~ 292 (518)
T PF10212_consen 284 S---VPYEEALA 292 (518)
T ss_pred c---CChHHHHh
Confidence 4 77777554
No 441
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=42.01 E-value=83 Score=29.27 Aligned_cols=46 Identities=20% Similarity=0.351 Sum_probs=36.7
Q ss_pred HHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 003487 580 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625 (816)
Q Consensus 580 ele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRk 625 (816)
+++.|..++..+..|+..++.|-+.++..+++-++|-...-.||-+
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN 70 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDA 70 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5667777778888888888888888888888888888887777764
No 442
>PHA02816 hypothetical protein; Provisional
Probab=41.91 E-value=16 Score=34.02 Aligned_cols=29 Identities=34% Similarity=0.524 Sum_probs=25.1
Q ss_pred cccccccceeeecCCCCCCCCCccccccc
Q 003487 54 QHHLEADRVRVTDLDGAGTSDGPDKAVVS 82 (816)
Q Consensus 54 ~~~~~~~~~~~~d~dg~~~s~g~~~~v~~ 82 (816)
+.++.-++|.+.|+|||.-||...++|++
T Consensus 37 kkaisiervtlldsdgandsdsssntvss 65 (106)
T PHA02816 37 KKAISIERVTLLDSDGANDSDSSSNTVSS 65 (106)
T ss_pred hheeeEEEEEEeccCCCCCccccCccccc
Confidence 45667789999999999999999998877
No 443
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.80 E-value=7.1e+02 Score=30.11 Aligned_cols=95 Identities=14% Similarity=0.079 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHHhhhhH
Q 003487 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLK----SEMEKLQEEIKVQLVELESFR 536 (816)
Q Consensus 461 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk----~dmEqLq~Ei~aQ~~~le~l~ 536 (816)
+|.+|.-.|..+++-=-.|-|. + | .+-+.+|+--|+..||+...+.+-++ ..++.++ -|+.-++
T Consensus 209 ~~erlk~~~~s~~e~l~kl~~E-q--Q--lq~~~~ehkllee~~~rl~~~~s~VegS~S~~~l~~e----k~r~~le--- 276 (613)
T KOG0992|consen 209 LKERLKIVEESRLESLGKLNSE-Q--Q--LQALIREHKLLEEHLERLHLQLSDVEGSWSGQNLALE----KQRSRLE--- 276 (613)
T ss_pred HHHHHHHHHHHHHHHHHhhhHH-H--H--HHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHH----HHHHHHH---
Confidence 4455554444444332223333 1 1 55666677777777777666555444 1111111 1111111
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHH
Q 003487 537 NEYANVRLECNAADERAKILASEVIGLEEKALRL 570 (816)
Q Consensus 537 aErdaArle~~aA~ERak~LAaEVV~LEEk~l~L 570 (816)
-+.+. +..+-.+|.+.+-+=|-.+++..++|
T Consensus 277 --e~~~~-e~~e~rk~v~k~~~l~q~~~~~~~eL 307 (613)
T KOG0992|consen 277 --EQVAE-ETTEKRKAVKKRDDLIQSRKQVSFEL 307 (613)
T ss_pred --HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222 55566667777777777777666655
No 444
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=41.62 E-value=4.3e+02 Score=27.58 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhHHHHHhhHHHHHHHHHh
Q 003487 724 VQALSSELAQSSKLKDLNNELSRKLEHQ 751 (816)
Q Consensus 724 ~~AL~~es~~~s~Lk~lN~ELsrKLE~q 751 (816)
-..|..-..++.+|++.+.+...-|...
T Consensus 219 ~~~l~~~~~k~~~l~~~~~~~~~~L~~a 246 (264)
T PF06008_consen 219 QKNLEDLEKKKQELSEQQNEVSETLKEA 246 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666555543
No 445
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=41.60 E-value=3.9e+02 Score=27.06 Aligned_cols=41 Identities=10% Similarity=0.097 Sum_probs=24.5
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 003487 454 YSTKHNEDFAALEQHIEDLTQEKFA----LQRSLEASRALSESLA 494 (816)
Q Consensus 454 ~s~~~~~~faaLqqhIeDLT~EKfa----LqR~L~~s~~l~EsLA 494 (816)
--+..+.+|..+...|+.|..-==. .+|-+.+.++++..++
T Consensus 8 ~~~~~d~eF~e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~ 52 (200)
T cd07624 8 LLKNRSPEFDKMNEYLTLFGEKLGTIERISQRIHKERIEYFDELK 52 (200)
T ss_pred hhcCCCccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677899999888887643222 3444445555554443
No 446
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=41.29 E-value=3.3e+02 Score=26.10 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=8.6
Q ss_pred chhhHHHHHHHHHHHHH
Q 003487 458 HNEDFAALEQHIEDLTQ 474 (816)
Q Consensus 458 ~~~~faaLqqhIeDLT~ 474 (816)
....|+-+=.-|..|..
T Consensus 73 ~G~gF~vvA~eir~LA~ 89 (213)
T PF00015_consen 73 AGRGFAVVADEIRKLAE 89 (213)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhhh
Confidence 34455555555554443
No 447
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=41.25 E-value=4.6e+02 Score=27.77 Aligned_cols=104 Identities=14% Similarity=0.294 Sum_probs=66.8
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHhhhhhhHHH-HHHHHHHHHHhHHHHHHHHhhh
Q 003487 496 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV-QLVELESFRNEYANVRLECNAADE-RAKILASEVIGLEEKALRLRSN 573 (816)
Q Consensus 496 ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~a-Q~~~le~l~aErdaArle~~aA~E-Rak~LAaEVV~LEEk~l~LRS~ 573 (816)
++..|.+-+.+-+ ++...+..+.++... ..+.+...-.||-+....+.++-. |.+.+ .....++.-+.+.|..
T Consensus 74 ~~~~ls~~l~~la----ev~~ki~~~~~~qa~~d~~~l~e~L~eYiR~i~svK~~f~~R~k~~-~~~~~a~~~L~kkr~~ 148 (234)
T cd07664 74 DHTALSRALSQLA----EVEEKIDQLHQDQAFADFYLFSELLGDYIRLIAAVKGVFDQRMKCW-QKWQDAQVTLQKKREA 148 (234)
T ss_pred ccchHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4445555555444 444444444444333 334566678899998888877654 55544 4556777777777777
Q ss_pred hhhhHH-----HHhhhHHHHHHHHHHhhhHHHhhhh
Q 003487 574 ELKLER-----QLENSQSEISSYKKKISSLEKERQD 604 (816)
Q Consensus 574 ELKler-----ele~l~~E~~s~~rqlsslekeR~~ 604 (816)
.-|+.. -++.+..|+..+++++..+.++-..
T Consensus 149 ~~Kl~~~~k~dK~~~~~~ev~~~e~~~~~a~~~fe~ 184 (234)
T cd07664 149 EAKLQYANKPDKLQQAKDEIKEWEAKVQQGERDFEQ 184 (234)
T ss_pred HHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666632 4667888888888888888776554
No 448
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=41.06 E-value=5e+02 Score=28.14 Aligned_cols=95 Identities=19% Similarity=0.258 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHH--HHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHH
Q 003487 514 LKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADE--RAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY 591 (816)
Q Consensus 514 Lk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~E--Rak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~ 591 (816)
+++.++++|.--..++-.++.-+.-|..++.....|.. ..... ....=.+++.+++ -|+++--+.+..--..|
T Consensus 117 ~e~~f~kaqK~w~k~~kk~~~sKk~Y~~~ck~e~~a~~~e~~~k~--~~~~~~~q~~K~~---~kleK~~~~~~k~~~~Y 191 (258)
T cd07681 117 AEEGFRKAQKPWVKKLKEVESSKKGYHAARKDERTAQTRETHAKA--DSTVSQEQLRKLQ---DRVEKCTQEAEKAKEQY 191 (258)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCcCCHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 33555556665555666666666666666433333321 11100 0000022222222 22333333333333667
Q ss_pred HHHhhhHHHhhh----hhHHHHHHHH
Q 003487 592 KKKISSLEKERQ----DFQSTIEALQ 613 (816)
Q Consensus 592 ~rqlsslekeR~----~lqsti~ALQ 613 (816)
+..|..|++-|. ++..+.+.+|
T Consensus 192 ~~~v~~L~~~~~~w~e~m~~~~d~~Q 217 (258)
T cd07681 192 EKALEELNRYNPRYMEDMEQAFEICQ 217 (258)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 777777777664 5778888888
No 449
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=41.03 E-value=1.5e+02 Score=34.99 Aligned_cols=42 Identities=10% Similarity=0.266 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHH
Q 003487 509 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADE 551 (816)
Q Consensus 509 ~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~E 551 (816)
..+++++.++++.++...+-...|.. +.+...+++...+..+
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~Lp~-~~~~~~yk~~v~~i~~ 205 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDLPN-KQDLEEYKKRLEAIKK 205 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHh
Confidence 34455555555555555544444443 4555555555555444
No 450
>PRK00736 hypothetical protein; Provisional
Probab=41.01 E-value=2.1e+02 Score=25.03 Aligned_cols=48 Identities=15% Similarity=0.272 Sum_probs=30.1
Q ss_pred HHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Q 003487 560 VIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 628 (816)
Q Consensus 560 VV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRka~~ 628 (816)
+..||.|+.- .+.-++.|+..+-+-.+ .|+.|+.+-++|..||+.+..
T Consensus 7 i~~LE~klaf-------qe~tie~Ln~~v~~Qq~--------------~i~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00736 7 LTELEIRVAE-------QEKTIEELSDQLAEQWK--------------TVEQMRKKLDALTERFLSLEE 54 (68)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhcc
Confidence 5566666652 25566666655544333 456777788888888886543
No 451
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=40.92 E-value=1.4e+02 Score=28.33 Aligned_cols=47 Identities=23% Similarity=0.334 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 003487 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ 506 (816)
Q Consensus 460 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNq 506 (816)
+.|+.|+++|..|..+=-+|...+..--+=+..|--||..|-++..+
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888776666666665555556666666666665544
No 452
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=40.90 E-value=4.8e+02 Score=27.93 Aligned_cols=120 Identities=23% Similarity=0.224 Sum_probs=81.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHH----------HHHHHHHHhHHHHHHHHhh
Q 003487 503 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA----------KILASEVIGLEEKALRLRS 572 (816)
Q Consensus 503 ~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERa----------k~LAaEVV~LEEk~l~LRS 572 (816)
+-.+....|...+..++.++.....++..+....++|-..-..|-+..++- +.--+-.-=|+.||.-
T Consensus 75 k~~~L~~~l~~ek~~~~~~k~~~~e~~~~l~~q~~~y~~vL~~cl~~L~~li~~~rl~~q~~~d~~~~~~L~~kcea--- 151 (238)
T PF14735_consen 75 KSWQLPELLREEKQRLEKEKAQLRELLVLLERQFATYYQVLLQCLQLLQKLIEKHRLGTQAELDKIKAEYLEAKCEA--- 151 (238)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHhHHHHHHHHHHHHH---
Confidence 445556666666777777777777777778888889999888888888772 2222333345555532
Q ss_pred hhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 003487 573 NELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 626 (816)
Q Consensus 573 ~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRka 626 (816)
..+|++-..-.+.++ -=+.-.|.++.+=|.+|...+..++.|......+|+.-
T Consensus 152 m~lKLr~~~~~iL~~-TYTpe~v~Al~~Ir~~L~~~~~~~e~~~~~a~~~L~~Y 204 (238)
T PF14735_consen 152 MILKLRVLELEILSD-TYTPETVPALRKIRDHLEEAIEELEQELQKARQRLESY 204 (238)
T ss_pred HHHHHHHHHHHHHHc-cCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234444332233333 22356789999999999999999999999999999853
No 453
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=40.89 E-value=3.1e+02 Score=25.76 Aligned_cols=49 Identities=22% Similarity=0.398 Sum_probs=22.6
Q ss_pred HHHHHHHh-hhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHH
Q 003487 564 EEKALRLR-SNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM 619 (816)
Q Consensus 564 EEk~l~LR-S~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklL 619 (816)
|.||-.|| |=|-|-++.+.+|..++..+.+.+. .|+.-+++..+||+-|
T Consensus 33 E~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e-------~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 33 ETKVKALKKSYEARWEKKVDELENENKALKRENE-------QLKKKLDTEREEKQEL 82 (87)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 44444443 3344455555555544444444444 3334444555555444
No 454
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=40.89 E-value=7.2e+02 Score=29.92 Aligned_cols=103 Identities=22% Similarity=0.314 Sum_probs=57.9
Q ss_pred HHHHHhhhHHHHHHHHhhHHHHHHHHH-------HHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhH
Q 003487 491 ESLAAENSSLTDSYNQQRSVVNQLKSE-------MEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL 563 (816)
Q Consensus 491 EsLA~ENsaLTd~yNqQ~~~v~qLk~d-------mEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~L 563 (816)
++|-.---+|+++-|---+.|+++|.+ |++|+.||.--..+++++++-+|- -++.=|-+...-|=+.+
T Consensus 298 ~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~-----L~~q~~kq~Is~e~fe~ 372 (622)
T COG5185 298 KTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDE-----LHKQLRKQGISTEQFEL 372 (622)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHH-----HHHHHHhcCCCHHHHHH
Confidence 345566667777777777777777765 456777776666666667666665 22333333333333222
Q ss_pred HHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhh
Q 003487 564 EEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQD 604 (816)
Q Consensus 564 EEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~ 604 (816)
= -++--+|-|+|+.+..+++++.+-|-+-+.+.|.
T Consensus 373 m------n~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~ 407 (622)
T COG5185 373 M------NQEREKLTRELDKINIQSDKLTKSVKSRKLEAQG 407 (622)
T ss_pred H------HHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHH
Confidence 1 1223345566666666666666665544444443
No 455
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=40.86 E-value=3.1e+02 Score=25.75 Aligned_cols=66 Identities=24% Similarity=0.282 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHH
Q 003487 513 QLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQ 580 (816)
Q Consensus 513 qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlere 580 (816)
.|+..+.+|++++..-....+.+..+--.+....+ .++|+.++.+.+.+|..+.++-..-.+++.-
T Consensus 5 ~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~--~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~ 70 (171)
T PF03357_consen 5 KLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGN--KERAKIYLKRKKRLEKQLEKLLNQLSNLESV 70 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555444444444444444444444444 7899999999999999888776555554443
No 456
>PRK11519 tyrosine kinase; Provisional
Probab=40.80 E-value=7.2e+02 Score=29.89 Aligned_cols=16 Identities=19% Similarity=0.171 Sum_probs=5.9
Q ss_pred hHHHhhhhhHHHHHHH
Q 003487 597 SLEKERQDFQSTIEAL 612 (816)
Q Consensus 597 slekeR~~lqsti~AL 612 (816)
.|+.|..-.+.+.+.|
T Consensus 374 ~L~Re~~~~~~lY~~l 389 (719)
T PRK11519 374 RLTRDVESGQQVYMQL 389 (719)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 457
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=39.96 E-value=8.4e+02 Score=30.43 Aligned_cols=167 Identities=18% Similarity=0.254 Sum_probs=89.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH---Hhh-----hHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 003487 459 NEDFAALEQHIEDLTQEKFALQRSLEA----SRALSESLA---AEN-----SSLTDSYNQQRSVVNQLKSEMEKLQEEIK 526 (816)
Q Consensus 459 ~~~faaLqqhIeDLT~EKfaLqR~L~~----s~~l~EsLA---~EN-----saLTd~yNqQ~~~v~qLk~dmEqLq~Ei~ 526 (816)
..+.++|.+++|+.|+.|.++..-+.. -++-+++|- +|. ++++..-.+.-..-.+|..++..+..++.
T Consensus 23 e~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~ 102 (769)
T PF05911_consen 23 EAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLA 102 (769)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999988754321 233344332 222 23333333333333345555555555444
Q ss_pred HHHHHhhhhH---HHHHHHhhhhhhHHHHH----HHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHH
Q 003487 527 VQLVELESFR---NEYANVRLECNAADERA----KILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLE 599 (816)
Q Consensus 527 aQ~~~le~l~---aErdaArle~~aA~ERa----k~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlssle 599 (816)
.-.++..++. .||++...+......++ ..|-.-+-.+|-.+.-||-+-+-+++||+=-..|+.=.++.+.++.
T Consensus 103 ~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~ 182 (769)
T PF05911_consen 103 ESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAAS 182 (769)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4333333332 13333322222222221 1222223334444555555666666776666666666666666665
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHh
Q 003487 600 KERQDFQSTIEALQEEKKMMQSKLRK 625 (816)
Q Consensus 600 keR~~lqsti~ALQEEKklLqskLRk 625 (816)
|.-.+=.--|-.|..|=.+|..-+||
T Consensus 183 kqhle~vkkiakLEaEC~rLr~l~rk 208 (769)
T PF05911_consen 183 KQHLESVKKIAKLEAECQRLRALVRK 208 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44434344577888999999998885
No 458
>PRK10780 periplasmic chaperone; Provisional
Probab=39.94 E-value=3.7e+02 Score=26.35 Aligned_cols=43 Identities=19% Similarity=0.235 Sum_probs=29.7
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 003487 498 SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 540 (816)
Q Consensus 498 saLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErd 540 (816)
..+...|.+-......|+.+...++.+++....++.....++.
T Consensus 32 q~il~~~p~~k~~~~~le~~~~~~q~el~~~~~elq~~~~~~q 74 (165)
T PRK10780 32 GSIFQQVPQRTGVSKQLENEFKGRASELQRMETDLQAKMQKLQ 74 (165)
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777766666665555553
No 459
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.91 E-value=5e+02 Score=28.02 Aligned_cols=48 Identities=27% Similarity=0.339 Sum_probs=32.7
Q ss_pred hhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHH-----HHHHHHHHH
Q 003487 573 NELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ-----EEKKMMQSK 622 (816)
Q Consensus 573 ~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQ-----EEKklLqsk 622 (816)
.+| .++++.+.++-.++.+++.-..|.=+-+-.+++.|| ||+-++-.-
T Consensus 153 ~el--~keleel~~~~~s~~~klelrRkqf~~lm~~~~elQ~amedeedt~v~e~ 205 (222)
T KOG3215|consen 153 NEL--KKELEELDDLNNSTETKLELRRKQFKYLMVSTEELQCAMEDEEDTVVEES 205 (222)
T ss_pred HHH--HHHHHHHHHHhhhhHHHHHHHhhcchHHHhhHHHHHhhhhhhhhhHHHhc
Confidence 455 477788888888888888866555555666777777 555555443
No 460
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=39.74 E-value=6e+02 Score=28.63 Aligned_cols=41 Identities=22% Similarity=0.212 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHh---hhhhhHHHHHH
Q 003487 514 LKSEMEKLQEEIKVQLVELESFRNEYANVR---LECNAADERAK 554 (816)
Q Consensus 514 Lk~dmEqLq~Ei~aQ~~~le~l~aErdaAr---le~~aA~ERak 554 (816)
.|..-++|+.||..++.-|++.--+++..+ ....-|-.|++
T Consensus 82 EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~r 125 (305)
T PF14915_consen 82 EKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRAR 125 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHh
Confidence 344557899999999888888766655433 33444445554
No 461
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=39.72 E-value=3.2e+02 Score=31.97 Aligned_cols=88 Identities=20% Similarity=0.291 Sum_probs=59.9
Q ss_pred HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH--HhhhhhhHHHHHHHHHHHHHhHHHHHH
Q 003487 491 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN--VRLECNAADERAKILASEVIGLEEKAL 568 (816)
Q Consensus 491 EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErda--Arle~~aA~ERak~LAaEVV~LEEk~l 568 (816)
|++..=-+|=.+=|. ...++-+++.|.||+.+.|- -+.+.+||+. +.+..++|.|+=|.+=-|+-.||.--.
T Consensus 356 ESIVRiKqAEA~MFQ---~kAdEARrEAE~LqrI~~aK---~~k~EEEYas~~~kl~l~eaee~r~~~~eelk~~e~s~~ 429 (446)
T PF07227_consen 356 ESIVRIKQAEAKMFQ---LKADEARREAEGLQRIALAK---SEKIEEEYASRYLKLRLNEAEEERKKKFEELKVLENSHR 429 (446)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcc
Confidence 444444444455565 45677889999999987654 4555688875 677888888888888878777776666
Q ss_pred HHhhhhhhhHHHHhhh
Q 003487 569 RLRSNELKLERQLENS 584 (816)
Q Consensus 569 ~LRS~ELKlerele~l 584 (816)
....+-.+++.++.+|
T Consensus 430 ~~~~mk~rM~~~I~~L 445 (446)
T PF07227_consen 430 DYDNMKMRMQSEIQDL 445 (446)
T ss_pred ccchHHHHHHHHHHhh
Confidence 6656666665555443
No 462
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=39.69 E-value=7e+02 Score=30.71 Aligned_cols=19 Identities=11% Similarity=0.301 Sum_probs=10.7
Q ss_pred cccccccccchhhHHHHHh
Q 003487 689 LALEGLAVNIPHDQMRMIH 707 (816)
Q Consensus 689 ~~l~g~~vsIp~DQlRmI~ 707 (816)
|..|+.-+.+|.++|+-+.
T Consensus 665 V~~g~~k~~v~~~~l~~~~ 683 (782)
T PRK00409 665 VQAGIMKMKVPLSDLEKIQ 683 (782)
T ss_pred EEECCEEEEEeHHHceeCc
Confidence 3445555666666665443
No 463
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=39.68 E-value=6.9e+02 Score=29.34 Aligned_cols=148 Identities=17% Similarity=0.190 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 003487 458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN 537 (816)
Q Consensus 458 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~a 537 (816)
+..-..+..+.=+++-+.|-.+++.+...++=..+.-..-..=.+..+.+...+...+.++++.++++..+...++.+..
T Consensus 46 ke~~ke~~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~ 125 (514)
T TIGR03319 46 ETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEE 125 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHH
Q 003487 538 EYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 613 (816)
Q Consensus 538 ErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQ 613 (816)
|+...+.+...--|+.-.|..| |.|-.=+..-+-+++.++.... +.++..... +.++.-=.-++.|+|
T Consensus 126 e~~~~~~~~~~~le~~a~lt~~----eak~~l~~~~~~~~~~~~~~~~---~~~~~~~~~-~a~~~a~~i~~~aiq 193 (514)
T TIGR03319 126 ELEELIAEQREELERISGLTQE----EAKEILLEEVEEEARHEAAKLI---KEIEEEAKE-EADKKAKEILATAIQ 193 (514)
T ss_pred HHHHHHHHHHHHHHHHhCCCHH----HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHHHHH
No 464
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=39.51 E-value=3.7e+02 Score=26.14 Aligned_cols=86 Identities=19% Similarity=0.250 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHH
Q 003487 514 LKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKK 593 (816)
Q Consensus 514 Lk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~r 593 (816)
--+++..++.-+..-...++.+..+.++.++.+-.+.-+.+..+.+ =|.+ .--++..+.+-+.|++||+.
T Consensus 32 F~~ki~~F~~iv~~~~~~~~~~A~~VE~eKlkAIG~RN~l~s~~k~---R~~~-------~q~lq~~I~Ek~~eLERl~~ 101 (120)
T PF14931_consen 32 FVEKISEFQKIVKGFIEILDELAKRVENEKLKAIGARNLLKSEAKQ---REAQ-------QQQLQALIAEKKMELERLRS 101 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh---HHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555666666666666666655555544321 1111 11123333344455566666
Q ss_pred HhhhHHHhhhhhHHHH
Q 003487 594 KISSLEKERQDFQSTI 609 (816)
Q Consensus 594 qlsslekeR~~lqsti 609 (816)
+.++|.|--++-..+|
T Consensus 102 E~~sL~kve~eQ~~~i 117 (120)
T PF14931_consen 102 EYESLQKVEQEQNELI 117 (120)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666655444433333
No 465
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=39.15 E-value=4.7e+02 Score=29.12 Aligned_cols=110 Identities=17% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhh------------------
Q 003487 513 QLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNE------------------ 574 (816)
Q Consensus 513 qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~E------------------ 574 (816)
+||.--......+......++..+.+.|++++.+.--.=-..-|-.||. +|+.++|..
T Consensus 2 ~Lk~~nR~~~~~~~~~k~~t~e~k~~vD~~~LqLqNl~YE~~hL~kEI~----~C~~F~s~~~~i~Lv~~eEF~~~ap~~ 77 (355)
T PF09766_consen 2 ALKQLNRAAQFRIKKAKDETAEAKQEVDALHLQLQNLLYEKSHLQKEIK----KCLDFKSKYEDIELVPVEEFYAKAPEE 77 (355)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHH----HHhccCCCCCCCcCccHHHHHHhChhh
Q ss_pred hh------------hHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 003487 575 LK------------LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 626 (816)
Q Consensus 575 LK------------lerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRka 626 (816)
++ +=..|+--..++.++..++..+++.+..|+..+...++--..|..+|..+
T Consensus 78 ~~~~~~~~~~~H~lml~RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l 141 (355)
T PF09766_consen 78 ISDPELTEDDEHQLMLARLEFELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSL 141 (355)
T ss_pred ccccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
No 466
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=38.87 E-value=1.7e+02 Score=28.35 Aligned_cols=23 Identities=13% Similarity=0.306 Sum_probs=5.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Q 003487 500 LTDSYNQQRSVVNQLKSEMEKLQ 522 (816)
Q Consensus 500 LTd~yNqQ~~~v~qLk~dmEqLq 522 (816)
|..|...|...+.+....|..+.
T Consensus 35 L~~R~~~Q~~~~~~~~~~l~~i~ 57 (141)
T PF13874_consen 35 LKKRVEAQEEEIAQHRERLKEIN 57 (141)
T ss_dssp -----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443333
No 467
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=38.86 E-value=5.1e+02 Score=27.62 Aligned_cols=155 Identities=19% Similarity=0.286 Sum_probs=89.5
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH------------hhhHHHHHHHHhhHHHHHHHHHHHH
Q 003487 457 KHNEDFAALEQHIEDLTQEKFALQRSLE----ASRALSESLAA------------ENSSLTDSYNQQRSVVNQLKSEMEK 520 (816)
Q Consensus 457 ~~~~~faaLqqhIeDLT~EKfaLqR~L~----~s~~l~EsLA~------------ENsaLTd~yNqQ~~~v~qLk~dmEq 520 (816)
..|+-|.-..+.|++|-.-=-.|.+++. +-++|+..+++ ++.+|.+-+.+-+.+ ...+..
T Consensus 19 E~D~wF~~k~~~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~~E~~~~Ls~als~laev----~~~i~~ 94 (234)
T cd07665 19 ESDVWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNTALSRALSQLAEV----EEKIEQ 94 (234)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH----HHHHHH
Confidence 3455666666666666544333333332 33455554433 455666666555444 444444
Q ss_pred HHHHHHHH-HHHhhhhHHHHHHHhhhhhhH-HHHHHHHHHHHHhHHHHHHHHhhhhhhhHH-----HHhhhHHHHHHHHH
Q 003487 521 LQEEIKVQ-LVELESFRNEYANVRLECNAA-DERAKILASEVIGLEEKALRLRSNELKLER-----QLENSQSEISSYKK 593 (816)
Q Consensus 521 Lq~Ei~aQ-~~~le~l~aErdaArle~~aA-~ERak~LAaEVV~LEEk~l~LRS~ELKler-----ele~l~~E~~s~~r 593 (816)
+.+....| .+.+...-.||-+....+..| .+|++..- -...++..+.+.|...-|+.. .+..+..|+..+++
T Consensus 95 ~~~~qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~-~~~~~~~~l~kKr~~~~Kl~~~~~~dK~~~a~~Ev~e~e~ 173 (234)
T cd07665 95 LHQEQANNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQ-RWQDAQAMLQKKREAEARLLWANKPDKLQQAKDEIAEWES 173 (234)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 44443333 345566677888888888655 45666543 344556666666666666643 35567788888888
Q ss_pred HhhhHHHhhhhh----HHHHHHHHHHH
Q 003487 594 KISSLEKERQDF----QSTIEALQEEK 616 (816)
Q Consensus 594 qlsslekeR~~l----qsti~ALQEEK 616 (816)
++..++++-.++ ...++..++||
T Consensus 174 k~~~a~~~fe~is~~ik~El~rFe~er 200 (234)
T cd07665 174 RVTQYERDFERISATVRKEVIRFEKEK 200 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887765543 33344555555
No 468
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=38.70 E-value=3.2e+02 Score=25.50 Aligned_cols=58 Identities=22% Similarity=0.318 Sum_probs=32.2
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhh
Q 003487 538 EYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 596 (816)
Q Consensus 538 ErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqls 596 (816)
+...++.+.-....+-+.|+.|+-.|.++.-.-+. ..+...+++.+..++...+++..
T Consensus 18 ~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~~~~ 75 (106)
T PF05837_consen 18 KLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQRWR 75 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445666777788888877777664443 23344555555555444444444
No 469
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=38.53 E-value=6e+02 Score=28.31 Aligned_cols=59 Identities=20% Similarity=0.312 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 003487 481 RSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 541 (816)
Q Consensus 481 R~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErda 541 (816)
--.+++++=+-.+|+..+.|.++++.-.. -+|...+.++++.|.+|.-.++.++.+++.
T Consensus 41 Q~~EQAr~~A~~fA~~ld~~~~kl~~Ms~--~ql~~~~~k~~~si~~q~~~i~~l~~~i~~ 99 (301)
T PF06120_consen 41 QNAEQARQEAIEFADSLDELKEKLKEMSS--TQLRANIAKAEESIAAQKRAIEDLQKKIDS 99 (301)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777788888888887765432 244444444444444444444444444443
No 470
>PRK14151 heat shock protein GrpE; Provisional
Probab=38.37 E-value=4.5e+02 Score=26.88 Aligned_cols=96 Identities=17% Similarity=0.227 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHH
Q 003487 511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISS 590 (816)
Q Consensus 511 v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s 590 (816)
+..|+.+++.|+.+++...-.+--+.+|.+|+|-+...-.+.++..|.+=+ +..+..=+..
T Consensus 22 ~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~-------------------~~~LLpv~Dn 82 (176)
T PRK14151 22 GDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFALEKF-------------------AGDLLPVVDS 82 (176)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHhhHHhH
Confidence 334444444444444444444455566777776665555555555554322 2223333455
Q ss_pred HHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 003487 591 YKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625 (816)
Q Consensus 591 ~~rqlsslekeR~~lqsti~ALQEEKklLqskLRk 625 (816)
+++.+.+..++-..+.+.++-++-=.+.|..-|.+
T Consensus 83 lerAl~~~~~~~~~~~~~~~Gv~mi~k~l~~~L~k 117 (176)
T PRK14151 83 LERGLELSSADDEAIKPMREGVELTLKMFQDTLKR 117 (176)
T ss_pred HHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 55555544332222344444444444455555554
No 471
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=38.13 E-value=5e+02 Score=31.79 Aligned_cols=160 Identities=27% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003487 463 AALEQHIEDLTQEKFALQRSLEASRALSE--------------SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ 528 (816)
Q Consensus 463 aaLqqhIeDLT~EKfaLqR~L~~s~~l~E--------------sLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ 528 (816)
++|.|-|.+..-|=-.|.++|--....-. .|....+-|+.+||+...+..++..++++|-.+|..+
T Consensus 64 ~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~ 143 (660)
T KOG4302|consen 64 ARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGP 143 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q ss_pred ---------------HHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhh-hhHHHHhhhHHHHHHHH
Q 003487 529 ---------------LVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNEL-KLERQLENSQSEISSYK 592 (816)
Q Consensus 529 ---------------~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~EL-Klerele~l~~E~~s~~ 592 (816)
+-.|+.|++...-+|.+...=-+-...+-.+|..|=+-+--..++.+ ..+.-|...-.+..
T Consensus 144 ~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~--- 220 (660)
T KOG4302|consen 144 EDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQS--- 220 (660)
T ss_pred ccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCccc---
Q ss_pred HHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 003487 593 KKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 627 (816)
Q Consensus 593 rqlsslekeR~~lqsti~ALQEEKklLqskLRka~ 627 (816)
+-++-=..+|-+ -+++.|+++|+-.-.+|+.+.
T Consensus 221 ~~is~etl~~L~--~~v~~l~~~k~qr~~kl~~l~ 253 (660)
T KOG4302|consen 221 RSISDETLDRLD--KMVKKLKEEKKQRLQKLQDLR 253 (660)
T ss_pred ccCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
No 472
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=38.01 E-value=2.4e+02 Score=25.16 Aligned_cols=44 Identities=18% Similarity=0.300 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHH
Q 003487 513 QLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 556 (816)
Q Consensus 513 qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~L 556 (816)
+|=...++|+.|=..=+..++++..||+..+..-..|..|..+|
T Consensus 11 ~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 11 HLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334556666666666656666655444
No 473
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=37.77 E-value=6.8e+02 Score=28.75 Aligned_cols=165 Identities=19% Similarity=0.239 Sum_probs=81.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHhhHH--------HHHHHHHHHHHHHHHHHHH
Q 003487 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALS-ESLAAENSSLTDSYNQQRSV--------VNQLKSEMEKLQEEIKVQL 529 (816)
Q Consensus 459 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~-EsLA~ENsaLTd~yNqQ~~~--------v~qLk~dmEqLq~Ei~aQ~ 529 (816)
.+.+.-+++|||-.-+.|- |.--+-+++-+. ..|++.-+.+..+-|+-|-. +.+++..=-+|++++.-|.
T Consensus 150 ~eQy~~re~hidk~~e~ke-l~~ql~~aKlq~~~~l~a~~ee~~~~e~~~glEKd~lak~~~e~~~~~e~qlK~ql~lY~ 228 (391)
T KOG1850|consen 150 GEQYEEREKHIDKQIQKKE-LWEQLGKAKLQEIKLLTAKLEEASIQEKKSGLEKDELAKIMLEEMKQVEGQLKEQLALYM 228 (391)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788999998887776 777666555443 34555556666666654433 3333333333444433333
Q ss_pred HHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHH-------HHhhhHHHHHHHHHHhhhHHHhh
Q 003487 530 VELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER-------QLENSQSEISSYKKKISSLEKER 602 (816)
Q Consensus 530 ~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKler-------ele~l~~E~~s~~rqlsslekeR 602 (816)
...+.| +.-..-..|=--.+--|.--+--+|.++--+.|--++ -+-.+-.|..-+.+.+..+.+-=
T Consensus 229 aKyeef-------q~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq~ki 301 (391)
T KOG1850|consen 229 AKYEEF-------QTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQKKI 301 (391)
T ss_pred HHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 333333 2221122222222222333333333333222221111 11222233333444555555555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 003487 603 QDFQSTIEALQEEKKMMQSKLRKASGSGK 631 (816)
Q Consensus 603 ~~lqsti~ALQEEKklLqskLRka~~~gk 631 (816)
+-|+-+..|||-|+--|..+++-..+++-
T Consensus 302 q~LekLcRALq~ernel~~~~~~~e~~v~ 330 (391)
T KOG1850|consen 302 QRLEKLCRALQTERNELNKKLEDLEAQVS 330 (391)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcccc
Confidence 66777888888888888888885544443
No 474
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=37.71 E-value=2.6e+02 Score=25.05 Aligned_cols=17 Identities=35% Similarity=0.673 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003487 464 ALEQHIEDLTQEKFALQ 480 (816)
Q Consensus 464 aLqqhIeDLT~EKfaLq 480 (816)
-.+++|++|..|=|.|-
T Consensus 4 Eqe~~i~~L~KENF~LK 20 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLK 20 (75)
T ss_pred HHHHHHHHHHHhhhhHH
Confidence 46899999999998873
No 475
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=37.60 E-value=1.4e+02 Score=34.96 Aligned_cols=17 Identities=35% Similarity=0.327 Sum_probs=10.1
Q ss_pred HHHHhhhhhhhHHHHhh
Q 003487 567 ALRLRSNELKLERQLEN 583 (816)
Q Consensus 567 ~l~LRS~ELKlerele~ 583 (816)
+-++|..--|.|+|++.
T Consensus 311 lE~lR~~L~kAEkele~ 327 (575)
T KOG4403|consen 311 LEQLRVALEKAEKELEA 327 (575)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34566666666666654
No 476
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=37.42 E-value=4.3e+02 Score=29.81 Aligned_cols=59 Identities=10% Similarity=0.182 Sum_probs=27.3
Q ss_pred HhhhhhhhHHHHhhhHHHHHHHHHHhhhH----HHhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Q 003487 570 LRSNELKLERQLENSQSEISSYKKKISSL----EKERQDFQSTIEALQEEKKMMQSKLRKASG 628 (816)
Q Consensus 570 LRS~ELKlerele~l~~E~~s~~rqlssl----ekeR~~lqsti~ALQEEKklLqskLRka~~ 628 (816)
|-....=.+.+++.++..+...++.+... .+.+.-+......+|.+.+.++.++.+|-.
T Consensus 142 L~~~g~vs~~~~~~a~~a~~~A~A~~~~a~~~~~~~~~~l~~~~~~~~~~v~~a~a~~~~A~l 204 (352)
T COG1566 142 LAQRGVVSREELDRARAALQAAEAALAAAQAAQKQNLALLESEVSGAQAQVASAEAALDQAKL 204 (352)
T ss_pred HHhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHH
Confidence 33333334555555555555544444332 223333344444445555566666654433
No 477
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=37.33 E-value=1.3e+02 Score=25.20 Aligned_cols=33 Identities=30% Similarity=0.354 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 003487 510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 542 (816)
Q Consensus 510 ~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaA 542 (816)
.+.+++.++.+|+.+++......+.++.|.+..
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444445555555443
No 478
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=37.26 E-value=1.8e+02 Score=27.71 Aligned_cols=53 Identities=25% Similarity=0.270 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhhhHHHHHHH
Q 003487 708 NINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTA 760 (816)
Q Consensus 708 NInaLisELa~Ereel~~AL~~es~~~s~Lk~lN~ELsrKLE~qTQRLELlts 760 (816)
+|-+.|.+|+..-..+..-|..-...+.+|-++|++|+-..+.-..||.-...
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666777777777777777777777788888888887777777777766655
No 479
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=37.21 E-value=6.1e+02 Score=28.02 Aligned_cols=122 Identities=16% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHH-HHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 003487 462 FAALEQH-IEDLTQEKF----ALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR 536 (816)
Q Consensus 462 faaLqqh-IeDLT~EKf----aLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~ 536 (816)
+..|++. +.+||..++ +....|++++=-+.-|-.--..+. .+=+-...-.....+.+...+.+.....+++...
T Consensus 135 IqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~-Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~ 213 (269)
T PF05278_consen 135 IQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLRSKLEEIL-EAKEIYDQHETREEEKEEKDRKLELKKEELEELE 213 (269)
T ss_pred HHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHH
Q 003487 537 NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY 591 (816)
Q Consensus 537 aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~ 591 (816)
+|.+.+..+..++.+|-..++.-+..||.+-.++ .+.+.-+...++.+
T Consensus 214 EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l-------~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 214 EELKQKEKEVKEIKERITEMKGRLGELEMESTRL-------SKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh
No 480
>PRK09343 prefoldin subunit beta; Provisional
Probab=37.11 E-value=3.8e+02 Score=25.57 Aligned_cols=35 Identities=14% Similarity=0.236 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHH
Q 003487 584 SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKM 618 (816)
Q Consensus 584 l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKkl 618 (816)
+..+++-|+..+..++|.-..|+..+..+|..-+.
T Consensus 76 l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ 110 (121)
T PRK09343 76 LKERKELLELRSRTLEKQEKKLREKLKELQAKINE 110 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555666665555554433
No 481
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=36.97 E-value=7.1e+02 Score=28.74 Aligned_cols=98 Identities=22% Similarity=0.352 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 003487 464 ALEQHIEDLTQEKFALQ---RSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 540 (816)
Q Consensus 464 aLqqhIeDLT~EKfaLq---R~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErd 540 (816)
-||..|..+|+.--.|- ..++.-|.=+++|-.-|+.|...-=+-+++...-|.++-+|+.=|.-..-+...+..-.+
T Consensus 72 llq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~ 151 (401)
T PF06785_consen 72 LLQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLD 151 (401)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHH
Confidence 47777888876544332 234444555677888888887666666666666666666666665555556666777778
Q ss_pred HHhhhhhhHHHHHHHHHHHHH
Q 003487 541 NVRLECNAADERAKILASEVI 561 (816)
Q Consensus 541 aArle~~aA~ERak~LAaEVV 561 (816)
++.++|.+-.|+++.|--|..
T Consensus 152 ~l~~e~~Ekeeesq~LnrELa 172 (401)
T PF06785_consen 152 ALQQECGEKEEESQTLNRELA 172 (401)
T ss_pred HHHHHHhHhHHHHHHHHHHHH
Confidence 888999999999999876654
No 482
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=36.95 E-value=1.6e+02 Score=32.23 Aligned_cols=7 Identities=29% Similarity=0.321 Sum_probs=3.6
Q ss_pred hcCCCCc
Q 003487 626 ASGSGKS 632 (816)
Q Consensus 626 a~~~gk~ 632 (816)
|+-.|..
T Consensus 178 APfdG~V 184 (397)
T PRK15030 178 SPISGRI 184 (397)
T ss_pred cCCCeEE
Confidence 5555554
No 483
>PRK01156 chromosome segregation protein; Provisional
Probab=36.90 E-value=8.5e+02 Score=29.60 Aligned_cols=33 Identities=15% Similarity=0.068 Sum_probs=20.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 003487 703 MRMIHNINALISELALEKEELVQALSSELAQSS 735 (816)
Q Consensus 703 lRmI~NInaLisELa~Ereel~~AL~~es~~~s 735 (816)
..+|.++..-|.+++.+-++|-..++.-.....
T Consensus 468 ~e~i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~ 500 (895)
T PRK01156 468 NHIINHYNEKKSRLEEKIREIEIEVKDIDEKIV 500 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355777777777777777766665544444333
No 484
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=36.85 E-value=3.8e+02 Score=25.50 Aligned_cols=93 Identities=12% Similarity=0.095 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHHHHH
Q 003487 465 LEQHIEDLTQEKFALQRSLEASRAL-------SESLAAENSSLTDSYNQQR------SVVNQLKSEMEKLQEEIKVQLVE 531 (816)
Q Consensus 465 LqqhIeDLT~EKfaLqR~L~~s~~l-------~EsLA~ENsaLTd~yNqQ~------~~v~qLk~dmEqLq~Ei~aQ~~~ 531 (816)
|+.+++=-.++.-...+.|.+++.. .+.|...-.....++++.+ ..+.....=+++|.+.|..|...
T Consensus 7 L~~vL~l~~~~ee~a~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~g~~~~~l~~~~~fl~~L~~~i~~q~~~ 86 (146)
T PRK07720 7 LQKVLELKENEKEKALGEYEEAVSRFEQVAEKLYELLKQKEDLEQAKEEKLQSGLSIQEIRHYQQFVTNLERTIDHYQLL 86 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444333 3344444444444444422 22344556677788888888888
Q ss_pred hhhhHHHHHHHhhhhhhHHHHHHHHH
Q 003487 532 LESFRNEYANVRLECNAADERAKILA 557 (816)
Q Consensus 532 le~l~aErdaArle~~aA~ERak~LA 557 (816)
++.+..+.+.++....+|.-+.|++-
T Consensus 87 v~~~~~~ve~~r~~~~ea~~~~k~~e 112 (146)
T PRK07720 87 VMQAREQMNRKQQDLTEKNIEVKKYE 112 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888877777777666653
No 485
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=36.85 E-value=3.4e+02 Score=29.05 Aligned_cols=111 Identities=17% Similarity=0.216 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH------HHHHHhhHHHHHHHHHHHHHHHH-----------HHHHHHHh
Q 003487 470 EDLTQEKFALQRSLEASRALSESLAAENSSLT------DSYNQQRSVVNQLKSEMEKLQEE-----------IKVQLVEL 532 (816)
Q Consensus 470 eDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLT------d~yNqQ~~~v~qLk~dmEqLq~E-----------i~aQ~~~l 532 (816)
++|..+=-.+...++++++|++.|..+-..+- ..+|...+.++-..+.+-.-..- ....-.-|
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siL 81 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSIL 81 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHH
Confidence 44555555666778888999998888777666 34666555544443333211000 00111234
Q ss_pred hhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHH
Q 003487 533 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQ 580 (816)
Q Consensus 533 e~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlere 580 (816)
.-+..-||+-|.++.+=.+.-+.+-.++..|..++-.||.+-+||=..
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEK 129 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEK 129 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455777888888888877777777778888888888888777776433
No 486
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=36.42 E-value=3.4e+02 Score=34.23 Aligned_cols=49 Identities=27% Similarity=0.327 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHhhhHHHhhhhhHHH-HHHHH-HHHHHHHHHHHhhcCCCCc
Q 003487 584 SQSEISSYKKKISSLEKERQDFQST-IEALQ-EEKKMMQSKLRKASGSGKS 632 (816)
Q Consensus 584 l~~E~~s~~rqlsslekeR~~lqst-i~ALQ-EEKklLqskLRka~~~gk~ 632 (816)
+..|++.-++.-+-..++|.-++-. +-+-| +|..+++.+|+.+.+.|.+
T Consensus 257 ~~eEak~kkKekekek~er~KaeGklLTakQK~~~a~aea~l~~ll~sg~~ 307 (1064)
T KOG1144|consen 257 QEEEAKEKKKEKEKEKKERKKAEGKLLTAKQKEEAALAEAFLKQLLASGGG 307 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchHhhHHHHHHHHHHHHHHHhcCCC
Confidence 3444444455555555666655533 33445 7778888888887777764
No 487
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=36.40 E-value=3.4e+02 Score=24.81 Aligned_cols=21 Identities=24% Similarity=0.098 Sum_probs=9.4
Q ss_pred HHHHhhhhHHHHHHHhhhhhh
Q 003487 528 QLVELESFRNEYANVRLECNA 548 (816)
Q Consensus 528 Q~~~le~l~aErdaArle~~a 548 (816)
++..++.-..|-..+.-++..
T Consensus 21 ~~~~l~~~~~E~~~v~~EL~~ 41 (105)
T cd00632 21 QRQKVEAQLNENKKALEELEK 41 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 344444444444444444443
No 488
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=36.17 E-value=7.8e+02 Score=29.04 Aligned_cols=56 Identities=27% Similarity=0.399 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 003487 465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR 536 (816)
Q Consensus 465 LqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~ 536 (816)
|..-.++++.|--.+++-|++ |-..|... ...++..+.+++..|=+-+...++-+.
T Consensus 148 ld~e~~~~~~e~~~Y~~~l~~-------Le~~~~~~---------~~~~~~~e~~~l~~eE~~L~q~lk~le 203 (447)
T KOG2751|consen 148 LDKEVEDAEDEVDTYKACLQR-------LEQQNQDV---------SEEDLLKELKNLKEEEERLLQQLEELE 203 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HhhcCccc---------chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555444433 44444433 445555555555555444444444443
No 489
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=36.04 E-value=4.8e+02 Score=29.36 Aligned_cols=64 Identities=20% Similarity=0.217 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHhhHHHHHHHHHHHHHHHHH
Q 003487 462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLT-DSYNQQRSVVNQLKSEMEKLQEEI 525 (816)
Q Consensus 462 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLT-d~yNqQ~~~v~qLk~dmEqLq~Ei 525 (816)
.+.|+.++..|++|--.|++...+.++--|.+..+-.++- +-|-.=..++|+=|.+|..|++.+
T Consensus 139 ~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L 203 (342)
T PF06632_consen 139 NSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLL 203 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3445555555555555555555555555555554444332 223334455555555555555543
No 490
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=35.95 E-value=5.6e+02 Score=27.24 Aligned_cols=49 Identities=33% Similarity=0.342 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh----hHHHHHHHHHHHHHHHH
Q 003487 476 KFALQRSLEASRALSESLAAENSSLTDSYNQQ----RSVVNQLKSEMEKLQEE 524 (816)
Q Consensus 476 KfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ----~~~v~qLk~dmEqLq~E 524 (816)
|-.|.|-|.+..+---.|--+..-|+...|.+ -..|-.||+...+||.|
T Consensus 18 keel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqed 70 (195)
T PF10226_consen 18 KEELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQED 70 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555556667777777754 34677888888888876
No 491
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=35.38 E-value=2.9e+02 Score=24.98 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=16.1
Q ss_pred hhhhHHHHHHHHHHHHHhHHHHHHHH
Q 003487 545 ECNAADERAKILASEVIGLEEKALRL 570 (816)
Q Consensus 545 e~~aA~ERak~LAaEVV~LEEk~l~L 570 (816)
++.+..++++.+..++-.||+++..+
T Consensus 68 ~~~~l~~e~~~lk~~i~~le~~~~~~ 93 (108)
T PF02403_consen 68 DAEELKAEVKELKEEIKELEEQLKEL 93 (108)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666665543
No 492
>PRK00846 hypothetical protein; Provisional
Probab=35.11 E-value=3.4e+02 Score=24.83 Aligned_cols=25 Identities=16% Similarity=0.020 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCC
Q 003487 605 FQSTIEALQEEKKMMQSKLRKASGS 629 (816)
Q Consensus 605 lqsti~ALQEEKklLqskLRka~~~ 629 (816)
.+..|+.|+++-++|..||+.+-.+
T Consensus 39 qq~~I~~L~~ql~~L~~rL~~~~~s 63 (77)
T PRK00846 39 ARLTGARNAELIRHLLEDLGKVRST 63 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4567888999999999999976543
No 493
>PRK11546 zraP zinc resistance protein; Provisional
Probab=34.94 E-value=2e+02 Score=28.95 Aligned_cols=62 Identities=16% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHh
Q 003487 510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 571 (816)
Q Consensus 510 ~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LR 571 (816)
+-.+++.-...++.+...-+-.+-+-+.|+.+-...-+.-.++.+.|+.||..|-.++.++|
T Consensus 48 QQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r 109 (143)
T PRK11546 48 QQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELR 109 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
No 494
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=34.31 E-value=2.7e+02 Score=28.36 Aligned_cols=11 Identities=9% Similarity=0.247 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 003487 511 VNQLKSEMEKL 521 (816)
Q Consensus 511 v~qLk~dmEqL 521 (816)
+..++.+++++
T Consensus 80 ~~~~~~~~~r~ 90 (322)
T TIGR01730 80 LELAQRSFERA 90 (322)
T ss_pred HHHHHHHHHHH
Confidence 33334444333
No 495
>PRK14160 heat shock protein GrpE; Provisional
Probab=34.27 E-value=2e+02 Score=30.38 Aligned_cols=49 Identities=31% Similarity=0.253 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHH
Q 003487 511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASE 559 (816)
Q Consensus 511 v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaE 559 (816)
+.+|+.+++.|+.+++...-.+--+.+|++|+|-+...-.+.++..|.+
T Consensus 63 ~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e 111 (211)
T PRK14160 63 NNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACE 111 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444445566666665555555555444433
No 496
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=34.25 E-value=3.5e+02 Score=29.81 Aligned_cols=80 Identities=19% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHH-------HHhhhHHHhhhhhHHHHHHH
Q 003487 540 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYK-------KKISSLEKERQDFQSTIEAL 612 (816)
Q Consensus 540 daArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~-------rqlsslekeR~~lqsti~AL 612 (816)
|+++.+...+.-++..|-..|-.++++-.+- +-.++|.|+.+.+++. +-..-+..||++||--...|
T Consensus 160 d~l~~eLqkr~~~v~~l~~q~~k~~~~qv~~------in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l 233 (289)
T COG4985 160 DPLERELQKRLLEVETLRDQVDKMVEQQVRV------INSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQL 233 (289)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHh
Q 003487 613 QEEKKMMQSKLRK 625 (816)
Q Consensus 613 QEEKklLqskLRk 625 (816)
|+|-..|+.-+-+
T Consensus 234 ~~~L~~L~~e~~r 246 (289)
T COG4985 234 QTELDALRAELER 246 (289)
T ss_pred HHHHHHHhhhhhh
No 497
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=34.24 E-value=4.4e+02 Score=25.48 Aligned_cols=94 Identities=13% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHH
Q 003487 514 LKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKK 593 (816)
Q Consensus 514 Lk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlerele~l~~E~~s~~r 593 (816)
+..=|++.++.|...+..-+..+.|...++.++.+....||.=|...+ +.-.+.++.+.++...
T Consensus 32 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~----------------~~a~~~A~~ea~~~~~ 95 (141)
T PRK08476 32 LLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIR----------------QKAIAKAKEEAEKKIE 95 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHH
Q ss_pred HhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 003487 594 KISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625 (816)
Q Consensus 594 qlsslekeR~~lqsti~ALQEEKklLqskLRk 625 (816)
+.. ..-...+......+++|+..+...|++
T Consensus 96 ~A~--~~~~~~~~~a~~~l~~e~~~~~~~l~~ 125 (141)
T PRK08476 96 AKK--AELESKYEAFAKQLANQKQELKEQLLS 125 (141)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=34.12 E-value=5.9e+02 Score=26.96 Aligned_cols=104 Identities=23% Similarity=0.335 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHH------hh
Q 003487 501 TDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF--RNEYANVRLECNAADERAKILASEVIGLEEKALRL------RS 572 (816)
Q Consensus 501 Td~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l--~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~L------RS 572 (816)
|.-|++--+.|..+.=.+-++-+|.-...++--+| +.+.++ +|.=||.||+|+-++ +.
T Consensus 34 TEEFSa~IG~vLd~yL~yQKafnE~MekYLe~lNlPSr~Diar--------------vA~lvinlE~kvD~lee~fdd~~ 99 (189)
T TIGR02132 34 REEFSALMGNVLDLNLFYQKALNDTTGNYLEQVNVPTKEDIAN--------------VASLVINLEEKVDLIEEFFDDKF 99 (189)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhh--------hHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 003487 573 NELK--------LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625 (816)
Q Consensus 573 ~ELK--------lerele~l~~E~~s~~rqlsslekeR~~lqsti~ALQEEKklLqskLRk 625 (816)
+.|. +++++-++..++.+++.|+- .+..+|+.-|.-...|..-+++
T Consensus 100 d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D-------~~L~llE~~~~~~~~~~~~~~~ 153 (189)
T TIGR02132 100 DELEAQQEQAPALKKDVTKLKQDIKSLDKKLD-------KILELLEGQQKTQDELKETIQK 153 (189)
T ss_pred HHHHHHHhhCchHHhHHHHHHHHHHHHHHHHH-------HHHHHHhcCccchhHHHHHHHH
No 499
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=33.96 E-value=5.7e+02 Score=26.71 Aligned_cols=135 Identities=16% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 003487 462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 541 (816)
Q Consensus 462 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErda 541 (816)
|..+-...+.|......|-..| ..+.++ |+.--+.....-..++++-.++++.+..+..+++..+.-|+.
T Consensus 67 ~~~il~~~e~lA~~h~~~a~~L-------~~~~~e---L~~l~~~~e~~RK~~ke~~~k~~k~~~~a~~~leKAK~~Y~~ 136 (234)
T cd07652 67 YHSSLEFHEKLADNGLRFAKAL-------NEMSDE---LSSLAKTVEKSRKSIKETGKRAEKKVQDAEAAAEKAKARYDS 136 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhhhhHHHHHHHH--HHH-HHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHH-----HHHHH
Q 003487 542 VRLECNAADERAKIL--ASE-VIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQST-----IEALQ 613 (816)
Q Consensus 542 Arle~~aA~ERak~L--AaE-VV~LEEk~l~LRS~ELKlerele~l~~E~~s~~rqlsslekeR~~lqst-----i~ALQ 613 (816)
+-.+. ||++.- ... +..+-......+.++ .+.+-++.+. ..|..+|..+.+.|+++..+ +..||
T Consensus 137 ~c~e~----Ekar~~~~~~~~~~~~k~~~~~~~~Ee-~~~~K~~~A~---~~Y~~~v~~~n~~q~e~~~~~~p~i~~~lq 208 (234)
T cd07652 137 LADDL----ERVKTGDPGKKLKFGLKGNKSAAQHED-ELLRKVQAAD---QDYASKVNAAQALRQELLSRHRPEAVKDLF 208 (234)
T ss_pred HHHHH----HHHhccCCCccccccccchhhHHHhHH-HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q ss_pred H
Q 003487 614 E 614 (816)
Q Consensus 614 E 614 (816)
+
T Consensus 209 ~ 209 (234)
T cd07652 209 D 209 (234)
T ss_pred H
No 500
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=33.95 E-value=5.9e+02 Score=26.93 Aligned_cols=112 Identities=25% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhH
Q 003487 499 SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLE 578 (816)
Q Consensus 499 aLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKle 578 (816)
.|.++-.+....+..|..++..-.+.+..|. +.++.-|.+-|.+.--==.++|.|--=--.|=.|-..||- .=
T Consensus 9 ~lld~l~~Nnr~L~~L~~dl~~~~~~~~~~e---~~~~~KY~~lR~ElI~ELkqsKklydnYYkL~~KY~~LK~----~~ 81 (196)
T PF15272_consen 9 ELLDQLDQNNRALSDLNQDLRERDERYELQE---TSYKEKYQQLRQELINELKQSKKLYDNYYKLYSKYQELKK----SS 81 (196)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhHHHhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hh
Q ss_pred HHHhhhHHHHHHHHHHh--hhHHHhhhhhHHHHHHHHHHHH
Q 003487 579 RQLENSQSEISSYKKKI--SSLEKERQDFQSTIEALQEEKK 617 (816)
Q Consensus 579 rele~l~~E~~s~~rql--sslekeR~~lqsti~ALQEEKk 617 (816)
++...+...|..+++++ ..++|+|......=+-++.+.+
T Consensus 82 ~~~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~~~~r 122 (196)
T PF15272_consen 82 KQSEDLQSRISNLEKQLVDQMIEKDREIRTLQDELLSLELR 122 (196)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Done!