Query 003487
Match_columns 816
No_of_seqs 24 out of 26
Neff 2.6
Searched_HMMs 29240
Date Tue Mar 26 21:38:22 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/003487.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_117-121//hhsearch_pdb/003487hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 1.0 1 1 52.5 8.5 115 510-624 865-986 (1184)
2 1i84_S Smooth muscle myosin he 1.0 1 1 47.4 11.5 11 460-470 778-788 (1184)
3 3vkg_A Dynein heavy chain, cyt 1.0 1 1 42.1 23.1 157 449-605 1887-2082(3245)
4 3vkg_A Dynein heavy chain, cyt 1.0 1 1 38.3 21.0 27 700-727 2309-2335(3245)
5 3oja_B Anopheles plasmodium-re 1.0 1 1 35.4 14.2 134 489-625 443-576 (597)
6 1c1g_A Tropomyosin; contractIl 1.0 1 1 34.0 24.2 46 479-524 39-84 (284)
7 1c1g_A Tropomyosin; contractIl 1.0 1 1 33.6 24.2 100 462-568 8-107 (284)
8 2dfs_A Myosin-5A; myosin-V, in 1.0 1 1 33.3 16.5 154 469-625 916-1074(1080)
9 3oja_B Anopheles plasmodium-re 1.0 1 1 29.5 14.1 20 604-623 562-581 (597)
10 2v71_A Nuclear distribution pr 1.0 1 1 27.9 14.6 102 522-626 9-114 (189)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=52.50 Aligned_cols=115 Identities=19% Similarity=0.179 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999875554878787764204588-------99999988787089999998656666688875
Q 003487 510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAAD-------ERAKILASEVIGLEEKALRLRSNELKLERQLE 582 (816)
Q Consensus 510 ~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~-------ERak~LAaEVV~LEEk~l~LRS~ELKlekele 582 (816)
.+.+++..+++++.++..-...+..+..+...++....... ++...+..+...|++++-.+....-..+.++.
T Consensus 865 eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee~ee~l~ 944 (1184)
T 1i84_S 865 ELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQ 944 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 567778788987644788535469899999999999999997
Q 003487 583 NSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 624 (816)
Q Consensus 583 ~l~~E~~s~~kqlsslekeR~~lqsti~ALQEEKklLqskLR 624 (816)
.+..++...+.++..+.++...+...++.+++|+..+..++.
T Consensus 945 el~~e~~~le~el~~L~~eleele~~l~~l~~e~~~le~~l~ 986 (1184)
T 1i84_S 945 QLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIK 986 (1184)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999989889999999999999999888888999999999999
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=47.42 Aligned_cols=11 Identities=27% Similarity=0.302 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q ss_conf 34799999999
Q 003487 460 EDFAALEQHIE 470 (816)
Q Consensus 460 ~~faaLeqhIe 470 (816)
.-++.||...+
T Consensus 778 g~l~~LE~~r~ 788 (1184)
T 1i84_S 778 GVLAHLEEERD 788 (1184)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 18999999999
No 3
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=42.09 Aligned_cols=157 Identities=16% Similarity=0.245 Sum_probs=102.8
Q ss_pred CCCCCCCCCCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHH
Q ss_conf 0026666775034799-----99999998797999999999999999999-----------------9744577897777
Q 003487 449 NQHGFYSTKHNEDFAA-----LEQHIEDLTQEKFALQRSLEASRALSESL-----------------AAENSSLTDSYNQ 506 (816)
Q Consensus 449 ~~~~F~s~~~~~~faa-----LeqhIeDLT~EKfaLqR~L~~s~~l~EsL-----------------A~ENsaLTd~yNq 506 (816)
+.|+|.++..==+|-. |.+-.+++...+--|+.||+|=.+..+++ ..|.+++......
T Consensus 1887 ~R~~yvTP~syLeli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~ 1966 (3245)
T 3vkg_A 1887 GRQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQ 1966 (3245)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97536797999999999999999999999999999998899999999999999999999899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66799999999999999999999875554-----------------8787877642045889999998878708999999
Q 003487 507 QRSVVNQLKSEMEKLQEEIKVQLVELESF-----------------RNEYANVRLECNAADERAKILASEVIGLEEKALR 569 (816)
Q Consensus 507 Q~~~v~qLk~dmEqLq~Ei~aQ~~~le~l-----------------~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~ 569 (816)
....+++-|..++..+.+++.|..+.+.. +.+-+.|..+...|.++-+..-+++-.||+++-+
T Consensus 1967 ~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~ 2046 (3245)
T 3vkg_A 1967 DQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIAT 2046 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999986469998299999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 865666668887556777878898764478853546
Q 003487 570 LRSNELKLERQLENSQSEISSYKKKISSLEKERQDF 605 (816)
Q Consensus 570 LRS~ELKlekele~l~~E~~s~~kqlsslekeR~~l 605 (816)
|+-+-=++.+|.+.+..++..|++++..+++==+.|
T Consensus 2047 L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL 2082 (3245)
T 3vkg_A 2047 YKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNL 2082 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999862
No 4
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=38.32 Aligned_cols=27 Identities=7% Similarity=0.084 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4678877449999998898899999999
Q 003487 700 HDQMRMIHNINALISELALEKEELVQAL 727 (816)
Q Consensus 700 ~DQlRlI~NInaLisELa~Ereel~~AL 727 (816)
+|||--+ -|..---||+.+|.+|+...
T Consensus 2309 edQLL~~-vv~~ErPeLE~~r~~Li~~~ 2335 (3245)
T 3vkg_A 2309 QSQCLHE-ALKTERPDTHKKRSDLLKIQ 2335 (3245)
T ss_dssp HHHHHHH-HHHHHCHHHHHHHHHHHHTT
T ss_pred HHHHHHH-HHHHHCCCHHHHHHHHHHHH
T ss_conf 9999999-99775802999999999999
No 5
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=1.00 E-value=1 Score=35.37 Aligned_cols=134 Identities=16% Similarity=0.166 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999974457789777766799999999999999999999875554878787764204588999999887870899999
Q 003487 489 LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKAL 568 (816)
Q Consensus 489 l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l 568 (816)
+....+..++.+....++....+..|+.+..+.++.++.+..+++..+.++... ...-.+....+..++-.++++.-
T Consensus 443 ~~~~~~~~~e~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~ 519 (597)
T 3oja_B 443 QGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLP---KDGLARSSDNLNKVFTHLKERQA 519 (597)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---CCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 751015774999888988999999999999889999999999865555402766---11247878889999999886432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 986566666888755677787889876447885354698999999999999999974
Q 003487 569 RLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625 (816)
Q Consensus 569 ~LRS~ELKlekele~l~~E~~s~~kqlsslekeR~~lqsti~ALQEEKklLqskLRk 625 (816)
.+-....+.+++.+....+....++++..+++.-.+.+..+..+++|--.+-.++.+
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~ 576 (597)
T 3oja_B 520 FKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQ 576 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 367888888776554201113677664889998731014789988889999999999
No 6
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=1.00 E-value=1 Score=34.02 Aligned_cols=46 Identities=7% Similarity=0.130 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999744577897777667999999999999999
Q 003487 479 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 524 (816)
Q Consensus 479 LqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~E 524 (816)
+...+.....-.+.+..+-..+....+.....+..+...+.+++.+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (284)
T 1c1g_A 39 LEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEAD 84 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999999999999999999999999999989877988
No 7
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=1.00 E-value=1 Score=33.59 Aligned_cols=100 Identities=15% Similarity=0.198 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999999998797999999999999999999974457789777766799999999999999999999875554878787
Q 003487 462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 541 (816)
Q Consensus 462 faaLeqhIeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErda 541 (816)
+.+|+.-|+.+..+.-.+...+.....-.+.+..+-..+...+......+..+...+..++.+ +..+..+...
T Consensus 8 ~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 80 (284)
T 1c1g_A 8 MQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEK-------LELAEKKATD 80 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_conf 999887688899999999999999998898889999999999999999999999999999999-------9999998987
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 764204588999999887870899999
Q 003487 542 VRLECNAADERAKILASEVIGLEEKAL 568 (816)
Q Consensus 542 Arle~~aA~ERak~LAaEVV~LEEk~l 568 (816)
.........++...+..+.-.+++.+-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (284)
T 1c1g_A 81 AEADVASLNRRIQLFEEELDRAQERLA 107 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 798899999999988988998898899
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=1.00 E-value=1 Score=33.34 Aligned_cols=154 Identities=15% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99987979999999999999999999744577897777667999999999999999999998755548787877642045
Q 003487 469 IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNA 548 (816)
Q Consensus 469 IeDLT~EKfaLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~a 548 (816)
++.+...+..|+--+..-+.-.+.+..+|..|..+..+....+.+.-.+++.--++++....++.....+......+-..
T Consensus 916 ~~~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~ 995 (1080)
T 2dfs_A 916 VERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAK 995 (1080)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 67789998889999999999999999999999999987567899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Q ss_conf 88999999887870899999986566666888755677787889876447885354698-----9999999999999999
Q 003487 549 ADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQS-----TIEALQEEKKMMQSKL 623 (816)
Q Consensus 549 A~ERak~LAaEVV~LEEk~l~LRS~ELKlekele~l~~E~~s~~kqlsslekeR~~lqs-----ti~ALQEEKklLqskL 623 (816)
..+.-..+..|.-.||+++-+++. .++..+..+..|...++.|+..++.+.....- .-.++.+|++.|+.-+
T Consensus 996 l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1072 (1080)
T 2dfs_A 996 LRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDL 1072 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999---99999999999999999999999999999888777788887899999999999
Q ss_pred HH
Q ss_conf 74
Q 003487 624 RK 625 (816)
Q Consensus 624 Rk 625 (816)
.+
T Consensus 1073 ~~ 1074 (1080)
T 2dfs_A 1073 ND 1074 (1080)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=1.00 E-value=1 Score=29.47 Aligned_cols=20 Identities=10% Similarity=0.238 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 46989999999999999999
Q 003487 604 DFQSTIEALQEEKKMMQSKL 623 (816)
Q Consensus 604 ~lqsti~ALQEEKklLqskL 623 (816)
++.-.+..+..|.|-|+.++
T Consensus 562 ~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 562 ELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 98888999999999999874
No 10
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=1.00 E-value=1 Score=27.92 Aligned_cols=102 Identities=15% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999875554878787764204588999999887870899999986566666888755677787889876447885
Q 003487 522 QEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKE 601 (816)
Q Consensus 522 q~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlekele~l~~E~~s~~kqlssleke 601 (816)
+.+|.-+......+..+++.++.+.++-.+.++-|.+| ||..+-++-...=.++..+..+..|+.+++.|+.....+
T Consensus 9 ~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~E---LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e 85 (189)
T 2v71_A 9 KEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAE---LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ 85 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999989999999---999999999889999999998999999999999999888
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ----3546989999999999999999742
Q 003487 602 ----RQDFQSTIEALQEEKKMMQSKLRKA 626 (816)
Q Consensus 602 ----R~~lqsti~ALQEEKklLqskLRka 626 (816)
-..|+..|..|++++.-|+.++|.+
T Consensus 86 ~~~~~~~Lq~el~~l~~~~~~l~~~ireL 114 (189)
T 2v71_A 86 SYKQVSVLEDDLSQTRAIKEQLHKYVREL 114 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999
Done!