Query 003487
Match_columns 816
No_of_seqs 24 out of 26
Neff 2.6
Searched_HMMs 13730
Date Tue Mar 26 21:44:54 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/003487.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H2_117-121//hhsearch_scop/003487hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ji8a_ d.203.1.1 (A:) DsrC, t 36.3 3.7 0.00027 16.4 0.1 14 796-809 83-96 (111)
2 d2efka1 a.238.1.4 (A:10-288) C 35.3 8.9 0.00064 13.8 19.8 58 500-557 93-150 (279)
3 d2v4jc1 d.203.1.1 (C:3-105) Ds 27.5 4.7 0.00034 15.7 -0.6 13 797-809 76-88 (103)
4 d2efla1 a.238.1.4 (A:1-288) Fo 17.3 19 0.0014 11.6 19.8 41 512-552 114-154 (288)
5 d1gg2g_ a.137.3.1 (G:) Transdu 15.3 21 0.0015 11.3 1.3 31 511-541 2-32 (54)
6 d1tbge_ a.137.3.1 (E:) Transdu 5.8 58 0.0042 8.4 1.0 27 512-538 13-39 (68)
7 d1seta1 a.2.7.1 (A:1-110) Sery 5.5 63 0.0046 8.1 5.7 19 521-539 33-51 (110)
8 d1sdia_ a.198.1.1 (A:) Hypothe 5.0 70 0.0051 7.8 2.2 107 477-596 93-199 (213)
9 d1fyja_ a.16.1.3 (A:) Multifun 3.9 97 0.007 6.9 4.0 43 499-542 4-46 (57)
10 d2igsa1 d.2.1.11 (A:4-215) Hyp 3.4 1.1E+02 0.0081 6.5 1.8 56 306-361 110-165 (212)
No 1
>d1ji8a_ d.203.1.1 (A:) DsrC, the gamma subunit of dissimilatory sulfite reductase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=36.33 E-value=3.7 Score=16.40 Aligned_cols=14 Identities=50% Similarity=0.949 Sum_probs=11.8
Q ss_pred HHHHHHHCCCCCCC
Q ss_conf 88777645999887
Q 003487 796 LGWIMKLFPGGPSR 809 (816)
Q Consensus 796 lgwimklfpgg~s~ 809 (816)
+++||+|||+||.|
T Consensus 83 ~~~L~~LFp~gPak 96 (111)
T d1ji8a_ 83 LEKIYQLFPSGPAH 96 (111)
T ss_dssp HHHHHHHTTSCHHH
T ss_pred HHHHHHHCCCCHHH
T ss_conf 89999985998999
No 2
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.31 E-value=8.9 Score=13.85 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7897777667999999999999999999998755548787877642045889999998
Q 003487 500 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILA 557 (816)
Q Consensus 500 LTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LA 557 (816)
|..-..++......+..++.+++.++.-....++-.+..|+.+..+...+......+.
T Consensus 93 l~~~~~~~~~~~k~~~~~~~~~~k~l~~~~~~~~k~k~~y~~~~~e~e~~~~~~~~~~ 150 (279)
T d2efka1 93 LTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLD 150 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999999999999999999999999888875
No 3
>d2v4jc1 d.203.1.1 (C:3-105) DsrC, the gamma subunit of dissimilatory sulfite reductase {Desulfovibrio vulgaris [TaxId: 881]}
Probab=27.54 E-value=4.7 Score=15.72 Aligned_cols=13 Identities=38% Similarity=0.897 Sum_probs=10.5
Q ss_pred HHHHHHCCCCCCC
Q ss_conf 8777645999887
Q 003487 797 GWIMKLFPGGPSR 809 (816)
Q Consensus 797 gwimklfpgg~s~ 809 (816)
+-||+|||+||.|
T Consensus 76 k~L~~LFp~~Pak 88 (103)
T d2v4jc1 76 KEVYELFPSGPGK 88 (103)
T ss_dssp HHHHHHSTTHHHH
T ss_pred HHHHHHCCCCHHH
T ss_conf 6999976998899
No 4
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.26 E-value=19 Score=11.64 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999987555487878776420458899
Q 003487 512 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADER 552 (816)
Q Consensus 512 ~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ER 552 (816)
..+..++.+++.++.-..-.+...+..|..+..+...+...
T Consensus 114 K~~~~~~~k~~k~~~~~~~~l~k~k~~Y~~~~~e~e~~~~~ 154 (288)
T d2efla1 114 KSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQY 154 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999998
No 5
>d1gg2g_ a.137.3.1 (G:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}
Probab=15.33 E-value=21 Score=11.33 Aligned_cols=31 Identities=13% Similarity=0.268 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999875554878787
Q 003487 511 VNQLKSEMEKLQEEIKVQLVELESFRNEYAN 541 (816)
Q Consensus 511 v~qLk~dmEqLq~Ei~aQ~~~le~l~aErda 541 (816)
+.++++.+|+|+.|+...+..+....++.-+
T Consensus 2 i~q~rk~VeqLr~e~~~~RikvS~aa~~l~~ 32 (54)
T d1gg2g_ 2 IAQARKLVEQLKMEANIDRIKVSKAAADLMA 32 (54)
T ss_dssp HHHHHHHHHHHHHHHSSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 8999999999999968742049999999999
No 6
>d1tbge_ a.137.3.1 (E:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.82 E-value=58 Score=8.36 Aligned_cols=27 Identities=22% Similarity=0.447 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999875554878
Q 003487 512 NQLKSEMEKLQEEIKVQLVELESFRNE 538 (816)
Q Consensus 512 ~qLk~dmEqLq~Ei~aQ~~~le~l~aE 538 (816)
.+++..+|||+.|....+..+....+|
T Consensus 13 ~~lk~~VeQLr~Ea~i~R~~VS~aa~d 39 (68)
T d1tbge_ 13 DKLKMEVDQLKKEVTLERMLVSKCCEE 39 (68)
T ss_dssp HHHHHHHHHHHHHHTCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999999999966740259989999
No 7
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=5.47 E-value=63 Score=8.14 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999998755548787
Q 003487 521 LQEEIKVQLVELESFRNEY 539 (816)
Q Consensus 521 Lq~Ei~aQ~~~le~l~aEr 539 (816)
|.++...-...++.++++|
T Consensus 33 ld~~rr~l~~~~e~l~~~r 51 (110)
T d1seta1 33 LDREVQELKKRLQEVQTER 51 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999
No 8
>d1sdia_ a.198.1.1 (A:) Hypothetical protein YcfC {Escherichia coli [TaxId: 562]}
Probab=5.04 E-value=70 Score=7.83 Aligned_cols=107 Identities=17% Similarity=0.195 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999974457789777766799999999999999999999875554878787764204588999999
Q 003487 477 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 556 (816)
Q Consensus 477 faLqR~L~~s~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~L 556 (816)
+.|+|-|.+..++...|..+=+.+-++...-...-..+-.-+..+..+....+--.=.+..+-.-.+..-+++.=||-.|
T Consensus 93 ~~LerkL~k~~~~l~~l~~ri~~~~~q~~~f~~~~~~via~la~iY~dtIS~l~pRI~V~G~~~~L~~~~~a~kIRALLL 172 (213)
T d1sdia_ 93 MVLERKLSSAKGALDTLGNRINGLQRQLEHFDLQSETLMSAMAAIYVDVISPLGPRIQVTGSPAVLQSPQVQAKVRATLL 172 (213)
T ss_dssp HHHHHHHHHSTTHHHHHHHHHHTTHHHHTTSCTTSHHHHHHHHHHHHHHTGGGSSCCCCCSCHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHCCCCHHHHHHHHHH
T ss_conf 99999983588999999999999999998657465999999999999974336980788487888269526999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8878708999999865666668887556777878898764
Q 003487 557 ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 596 (816)
Q Consensus 557 AaEVV~LEEk~l~LRS~ELKlekele~l~~E~~s~~kqls 596 (816)
|. .|+-.| =||+-|-+-..-=.|+++.
T Consensus 173 AG-----------IRaavL--WrQ~GG~Rwqllf~Rk~i~ 199 (213)
T d1sdia_ 173 AG-----------IRAAVL--WHQVGGGRLQLMFSRNRLT 199 (213)
T ss_dssp HH-----------HHHHHH--HHHTTCCHHHHHHHHHHHH
T ss_pred HH-----------HHHHHH--HHHHCCCHHHHHHHHHHHH
T ss_conf 99-----------999999--9992896056786589999
No 9
>d1fyja_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.87 E-value=97 Score=6.87 Aligned_cols=43 Identities=26% Similarity=0.387 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77897777667999999999999999999998755548787877
Q 003487 499 SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 542 (816)
Q Consensus 499 aLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaA 542 (816)
+|.+..++||..|-.||..-.- ..+|++.--.|-.++.+|..+
T Consensus 4 ~L~~~V~~QGd~VR~LK~~ka~-k~~i~~aV~~LL~LK~~yk~~ 46 (57)
T d1fyja_ 4 VLYNRVAVQGDVVRELKAKKAP-KEDVDAAVKQLLSLKAEYKEK 46 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999989999998804899-899999999999999999985
No 10
>d2igsa1 d.2.1.11 (A:4-215) Hypothetical protein PA2222 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=3.44 E-value=1.1e+02 Score=6.45 Aligned_cols=56 Identities=13% Similarity=0.179 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89987778998755567775445799888766546887555467765311125888
Q 003487 306 ASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVP 361 (816)
Q Consensus 306 ~~~L~s~~~t~~~~Sdstg~~~d~~~Ssnh~P~~S~~~et~~~RSRpSFLDSlnV~ 361 (816)
.+||-.+.+.|-.---+.||..++.++-|+.-=+-..|-.+.+|-.|+-+.-.|.+
T Consensus 110 ~~yl~~~k~spn~ypt~vg~~~~~~g~~~q~sg~~vsyg~~l~~lt~~~~qam~lp 165 (212)
T d2igsa1 110 SGYLDRFKGSPNVYPTDVGFSTDASGGISQESGLLVSYGVNLRTLTPGTWQAMTLP 165 (212)
T ss_dssp TTGGGGGTTCSCSSTTCEEECCCTTSSCSTTCBEEETTTEESSSCCHHHHHHCCCC
T ss_pred CCHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCH
T ss_conf 33788852799768664205760689967666768871222156687676650474
Done!