BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003488
(816 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 189 bits (481), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 201/677 (29%), Positives = 293/677 (43%), Gaps = 123/677 (18%)
Query: 158 QLTSLSLSYNHFSGHIPSFLSHXXXXXXXXXXXXXXVGGIPDSFVNLTQLSFLDLSWNQL 217
LTSL LS N SG + + S + + L FL++S N L
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTS----------------------LGSCSGLKFLNVSSNTL 138
Query: 218 T--GRLPSCLKGLRNLVTLRLSGNSLNGT-IPSWLFT-VLPYLEVIHLRDNRFTGSIPST 273
G++ LK L +L L LS NS++G + W+ + L+ + + N+ +G +
Sbjct: 139 DFPGKVSGGLK-LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--D 195
Query: 274 IFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKL 333
+ VNL + +SSNN S I LQ+L +S N+LS + A ST +L L
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFS-RAISTCTELKLL 252
Query: 334 GLSACNI-----------------------SEFPDFLRSQ-DRLEWLQLSENKIYGRIPN 369
+S+ E PDFL D L L LS N YG +P
Sbjct: 253 NISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312
Query: 370 WFW-----------------DIGKDTLYN------LNLSDNFLTDVEQVPLKNLRF---- 402
+F ++ DTL L+LS N + L NL
Sbjct: 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372
Query: 403 LDLRSNLLQGSVM---VLPPR--LIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSG 457
LDL SN G ++ P+ L + NN TG+IP + + + + LS N LSG
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432
Query: 458 PIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRL 517
IP L L L L LN G IPQ L LIL+ N G +P L+NC+ L
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492
Query: 518 QVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNT--DARVIFPKLRILDLSRN 575
++++NNR+ P W+ +L L +L L +N F G I D R L LDL+ N
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR----SLIWLDLNTN 548
Query: 576 EFTGVLPTRYFQNLKAM----MRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVE-MNILS 630
F G +P F+ + + G ++ M + +GI E +N LS
Sbjct: 549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608
Query: 631 I------------------------FLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHL 666
+ +D S N G IP+ +G + L +LN HN +
Sbjct: 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668
Query: 667 TGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNT 726
+G IP + +L L LDLSSN+L G+IP +++L L++++LS+N L GPIP+ QF T
Sbjct: 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFET 728
Query: 727 FQSDSYIGNLGLCGFPL 743
F ++ N GLCG+PL
Sbjct: 729 FPPAKFLNNPGLCGYPL 745
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 148/507 (29%), Positives = 208/507 (41%), Gaps = 79/507 (15%)
Query: 54 LISLTHLNLSNSYFSGQIPSEISQLSKMLS-LDLSKNDEVRIESPVWKGLIENLTKLKEL 112
L SL +L+L+ + F+G+IP +S L+ LDLS N P + +
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327
Query: 113 --VLSEVDMSTI-------VLDXXXXXXXXXXXXXXXXGCNLIGPIPASLANL-PQLTSL 162
E+ M T+ VLD G +P SL NL L +L
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFN--------------EFSGELPESLTNLSASLLTL 373
Query: 163 SLSYNHFSGHI-PSFLSHXXXXXXXXXXXXXX-VGGIPDSFVNLTQLSFLDLSWNQLTGR 220
LS N+FSG I P+ + G IP + N ++L L LS+N L+G
Sbjct: 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433
Query: 221 LPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNL 280
+PS L L L L+L N L G IP L V LE + L N TG IPS + NL
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV-KTLETLILDFNDLTGEIPSGLSNCTNL 492
Query: 281 TSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNI 340
I LS+N L+G I RL+NL L LS N S N
Sbjct: 493 NWISLSNNRLTGEIPK-WIGRLENLAILKLSNNSFSGN---------------------- 529
Query: 341 SEFPDFLRSQDRLEWLQLSENKIYGRIP-NWFWDIGKDTLYNLNLSDNFLTDVEQVPLKN 399
P L L WL L+ N G IP F GK ++ NF+ V +KN
Sbjct: 530 --IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK-------IAANFIAGKRYVYIKN 580
Query: 400 -------------LRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIE 446
L F +RS L P +I++ G +F +
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP-----CNITSRVYGGHTSPTFDNNGSMM 635
Query: 447 FIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGP 506
F+D+S N LSG IP+ + L L+L N +GSIP + GL L L+ N+ +G
Sbjct: 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695
Query: 507 LPQSLANCSRLQVLNVANNRIDDTFPH 533
+PQ+++ + L ++++NN + P
Sbjct: 696 IPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 135/479 (28%), Positives = 210/479 (43%), Gaps = 75/479 (15%)
Query: 6 VIGLDLSCSWLHGSIPSNSSLFLLPYL------ETLNLGSNDFNSSLISSGFGRLISLTH 59
+ GLDLS + +G++P P+ E+L L SN+F+ L ++ L
Sbjct: 296 LTGLDLSGNHFYGAVP--------PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347
Query: 60 LNLSNSYFSGQIPSEISQLSK-MLSLDLSKNDEVRIESPVWKGLIEN-LTKLKELVLSEV 117
L+LS + FSG++P ++ LS +L+LDLS N+ P+ L +N L+EL L
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNN---FSGPILPNLCQNPKNTLQELYLQNN 404
Query: 118 DMSTIVLDXXXXXXXXXXXXXXXXGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFL 177
+ + L G IP+SL +L +L L L N G IP L
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFN--YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462
Query: 178 SHXXXXXXXXXXXXXXVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLS 237
+ G IP N T L+++ LS N+LTG +P + L NL L+LS
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522
Query: 238 GNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELC 297
NS +G IP+ L L + L N F G+IP+ +F+ S ++++N ++G
Sbjct: 523 NNSFSGNIPAELGDCR-SLIWLDLNTNLFNGTIPAAMFK----QSGKIAANFIAGK---- 573
Query: 298 MFARLKNLQYLYLSQNRLSVNTKLDAN-STFPKLLKLGL------SACNISE-------F 343
+Y+Y+ + + N F + L + CNI+
Sbjct: 574 --------RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625
Query: 344 PDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGK-DTLYNLNLSDNFLTDVEQVPLKNLRF 402
P F + + +L +S N + G IP +IG L+ LNL N ++ + +LR
Sbjct: 626 PTF-DNNGSMMFLDMSYNMLSGYIPK---EIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681
Query: 403 LDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPE 461
L++ +S+NKL G IP + + IDLSNN+LSGPIPE
Sbjct: 682 LNI------------------LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 102/382 (26%), Positives = 159/382 (41%), Gaps = 92/382 (24%)
Query: 426 ISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECL------------VDSITLIW-- 471
+SN+ + G + C+A+ + +DLS NSLSGP+ V S TL +
Sbjct: 84 LSNSHINGSVSGFKCSAS-LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 472 -------------LDLHLNSFNGS--IPQISANGSG-LVNLILNDNQFEGPLPQS----- 510
LDL NS +G+ + + ++G G L +L ++ N+ G + S
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNL 202
Query: 511 ----------------LANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGL 554
L +CS LQ L+++ N++ F ++ EL +L + SN+F G
Sbjct: 203 EFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 262
Query: 555 IGNTDARVIFPKLRILDLSRNEFTGVLP-----------------TRYFQNLKAMMRGSN 597
I + L+ L L+ N+FTG +P ++ + +
Sbjct: 263 I----PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 598 TSTVQVQYMHRFGRY--YSAFFTLKGIDV----------EM-----NILSIFLVIDFSSN 640
+ F ++G+ V E+ N+ + L +D SSN
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378
Query: 641 RFEGQI-PEVV-GKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQL 698
F G I P + N L+ L +N TG+IP +L N + L SL LS N L G IP+ L
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438
Query: 699 TSLNFLSKLNLSHNQLEGPIPQ 720
SL+ L L L N LEG IPQ
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIPQ 460
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 189 bits (480), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 201/676 (29%), Positives = 293/676 (43%), Gaps = 123/676 (18%)
Query: 159 LTSLSLSYNHFSGHIPSFLSHXXXXXXXXXXXXXXVGGIPDSFVNLTQLSFLDLSWNQLT 218
LTSL LS N SG + + S + + L FL++S N L
Sbjct: 99 LTSLDLSRNSLSGPVTTLTS----------------------LGSCSGLKFLNVSSNTLD 136
Query: 219 --GRLPSCLKGLRNLVTLRLSGNSLNGT-IPSWLFT-VLPYLEVIHLRDNRFTGSIPSTI 274
G++ LK L +L L LS NS++G + W+ + L+ + + N+ +G + +
Sbjct: 137 FPGKVSGGLK-LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DV 193
Query: 275 FELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLG 334
VNL + +SSNN S I LQ+L +S N+LS + A ST +L L
Sbjct: 194 SRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLN 250
Query: 335 LSACNI-----------------------SEFPDFLRSQ-DRLEWLQLSENKIYGRIPNW 370
+S+ E PDFL D L L LS N YG +P +
Sbjct: 251 ISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 310
Query: 371 FW-----------------DIGKDTLYN------LNLSDNFLTDVEQVPLKNLRF----L 403
F ++ DTL L+LS N + L NL L
Sbjct: 311 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 370
Query: 404 DLRSNLLQGSVM---VLPPR--LIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGP 458
DL SN G ++ P+ L + NN TG+IP + + + + LS N LSG
Sbjct: 371 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 430
Query: 459 IPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQ 518
IP L L L L LN G IPQ L LIL+ N G +P L+NC+ L
Sbjct: 431 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 490
Query: 519 VLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNT--DARVIFPKLRILDLSRNE 576
++++NNR+ P W+ +L L +L L +N F G I D R L LDL+ N
Sbjct: 491 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR----SLIWLDLNTNL 546
Query: 577 FTGVLPTRYFQNLKAM----MRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVE-MNILSI 631
F G +P F+ + + G ++ M + +GI E +N LS
Sbjct: 547 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 606
Query: 632 ------------------------FLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLT 667
+ +D S N G IP+ +G + L +LN HN ++
Sbjct: 607 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 666
Query: 668 GRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTF 727
G IP + +L L LDLSSN+L G+IP +++L L++++LS+N L GPIP+ QF TF
Sbjct: 667 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF 726
Query: 728 QSDSYIGNLGLCGFPL 743
++ N GLCG+PL
Sbjct: 727 PPAKFLNNPGLCGYPL 742
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 148/507 (29%), Positives = 209/507 (41%), Gaps = 79/507 (15%)
Query: 54 LISLTHLNLSNSYFSGQIPSEISQLSKMLS-LDLSKNDEVRIESPVWKGLIENLTKLKEL 112
L SL +L+L+ + F+G+IP +S L+ LDLS N P + +
Sbjct: 265 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 324
Query: 113 --VLSEVDMSTI-------VLDXXXXXXXXXXXXXXXXGCNLIGPIPASLANL-PQLTSL 162
E+ M T+ VLD G +P SL NL L +L
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFN--------------EFSGELPESLTNLSASLLTL 370
Query: 163 SLSYNHFSGHI-PSFLSHXXXXXXXXXXXXXX-VGGIPDSFVNLTQLSFLDLSWNQLTGR 220
LS N+FSG I P+ + G IP + N ++L L LS+N L+G
Sbjct: 371 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 430
Query: 221 LPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNL 280
+PS L L L L+L N L G IP L V LE + L N TG IPS + NL
Sbjct: 431 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV-KTLETLILDFNDLTGEIPSGLSNCTNL 489
Query: 281 TSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNI 340
I LS+N L+G I + RL+NL L LS N S N
Sbjct: 490 NWISLSNNRLTGEIPKWI-GRLENLAILKLSNNSFSGN---------------------- 526
Query: 341 SEFPDFLRSQDRLEWLQLSENKIYGRIP-NWFWDIGKDTLYNLNLSDNFLTDVEQVPLKN 399
P L L WL L+ N G IP F GK ++ NF+ V +KN
Sbjct: 527 --IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK-------IAANFIAGKRYVYIKN 577
Query: 400 -------------LRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIE 446
L F +RS L P +I++ G +F +
Sbjct: 578 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP-----CNITSRVYGGHTSPTFDNNGSMM 632
Query: 447 FIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGP 506
F+D+S N LSG IP+ + L L+L N +GSIP + GL L L+ N+ +G
Sbjct: 633 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 692
Query: 507 LPQSLANCSRLQVLNVANNRIDDTFPH 533
+PQ+++ + L ++++NN + P
Sbjct: 693 IPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 134/479 (27%), Positives = 210/479 (43%), Gaps = 75/479 (15%)
Query: 6 VIGLDLSCSWLHGSIPSNSSLFLLPYL------ETLNLGSNDFNSSLISSGFGRLISLTH 59
+ GLDLS + +G++P P+ E+L L SN+F+ L ++ L
Sbjct: 293 LTGLDLSGNHFYGAVP--------PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 344
Query: 60 LNLSNSYFSGQIPSEISQLSK-MLSLDLSKNDEVRIESPVWKGLIEN-LTKLKELVLSEV 117
L+LS + FSG++P ++ LS +L+LDLS N+ P+ L +N L+EL L
Sbjct: 345 LDLSFNEFSGELPESLTNLSASLLTLDLSSNN---FSGPILPNLCQNPKNTLQELYLQNN 401
Query: 118 DMSTIVLDXXXXXXXXXXXXXXXXGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFL 177
+ + L G IP+SL +L +L L L N G IP L
Sbjct: 402 GFTGKIPPTLSNCSELVSLHLSFN--YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 459
Query: 178 SHXXXXXXXXXXXXXXVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLS 237
+ G IP N T L+++ LS N+LTG +P + L NL L+LS
Sbjct: 460 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 519
Query: 238 GNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELC 297
NS +G IP+ L + + L N F G+IP+ +F+ S ++++N ++G
Sbjct: 520 NNSFSGNIPAELGDCRSLI-WLDLNTNLFNGTIPAAMFK----QSGKIAANFIAGK---- 570
Query: 298 MFARLKNLQYLYLSQNRLSVNTKLDAN-STFPKLLKLGL------SACNISE-------F 343
+Y+Y+ + + N F + L + CNI+
Sbjct: 571 --------RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 622
Query: 344 PDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGK-DTLYNLNLSDNFLTDVEQVPLKNLRF 402
P F + + +L +S N + G IP +IG L+ LNL N ++ + +LR
Sbjct: 623 PTF-DNNGSMMFLDMSYNMLSGYIPK---EIGSMPYLFILNLGHNDISGSIPDEVGDLRG 678
Query: 403 LDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPE 461
L++ +S+NKL G IP + + IDLSNN+LSGPIPE
Sbjct: 679 LNI------------------LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 102/382 (26%), Positives = 159/382 (41%), Gaps = 92/382 (24%)
Query: 426 ISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECL------------VDSITLIW-- 471
+SN+ + G + C+A+ + +DLS NSLSGP+ V S TL +
Sbjct: 81 LSNSHINGSVSGFKCSAS-LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 472 -------------LDLHLNSFNGS--IPQISANGSG-LVNLILNDNQFEGPLPQS----- 510
LDL NS +G+ + + ++G G L +L ++ N+ G + S
Sbjct: 140 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNL 199
Query: 511 ----------------LANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGL 554
L +CS LQ L+++ N++ F ++ EL +L + SN+F G
Sbjct: 200 EFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 259
Query: 555 IGNTDARVIFPKLRILDLSRNEFTGVLP-----------------TRYFQNLKAMMRGSN 597
I + L+ L L+ N+FTG +P ++ + +
Sbjct: 260 I----PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 315
Query: 598 TSTVQVQYMHRFGRY--YSAFFTLKGIDV----------EM-----NILSIFLVIDFSSN 640
+ F ++G+ V E+ N+ + L +D SSN
Sbjct: 316 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 375
Query: 641 RFEGQI-PEVV-GKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQL 698
F G I P + N L+ L +N TG+IP +L N + L SL LS N L G IP+ L
Sbjct: 376 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 435
Query: 699 TSLNFLSKLNLSHNQLEGPIPQ 720
SL+ L L L N LEG IPQ
Sbjct: 436 GSLSKLRDLKLWLNMLEGEIPQ 457
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 114/252 (45%), Gaps = 54/252 (21%)
Query: 144 NLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHXXXXXXXXXXXXXXVGGIPDSFVN 203
NL+GPIP ++A L QL L +++ + SG IP FLS
Sbjct: 88 NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ------------------------ 123
Query: 204 LTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRD 263
+ L LD S+N L+G LP + L NLV + GN ++G IP + + +
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183
Query: 264 NRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDA 323
NR TG IP T F +NL + LS N L G + +F KN Q ++L++N L+ +
Sbjct: 184 NRLTGKIPPT-FANLNLAFVDLSRNMLEGDASV-LFGSDKNTQKIHLAKNSLAFD----- 236
Query: 324 NSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLN 383
L K+GLS L L L N+IYG +P + L++LN
Sbjct: 237 ------LGKVGLSK--------------NLNGLDLRNNRIYGTLPQGLTQL--KFLHSLN 274
Query: 384 LS-DNFLTDVEQ 394
+S +N ++ Q
Sbjct: 275 VSFNNLCGEIPQ 286
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 102/246 (41%), Gaps = 26/246 (10%)
Query: 501 NQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDA 560
N GP+P ++A ++L L + + + P +L+Q+ L+ L N G + + +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 561 RVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLK 620
+ P L + N +G +P Y K +++ + G+ F L
Sbjct: 147 SL--PNLVGITFDGNRISGAIPDSYGSFSKLF------TSMTISRNRLTGKIPPTFANLN 198
Query: 621 GIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLT---GRIPSSLRNL 677
+D S N EG + G + ++ + N L G++ S
Sbjct: 199 -----------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKN-- 245
Query: 678 TVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLG 737
L LDL +NR+ G +P LT L FL LN+S N L G IPQG F +Y N
Sbjct: 246 --LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303
Query: 738 LCGFPL 743
LCG PL
Sbjct: 304 LCGSPL 309
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 143/324 (44%), Gaps = 87/324 (26%)
Query: 148 PIPASLANLPQLTSLSLSYNHFSGHIPSFLSHXXXXXXXXXXXXXXVGGIPDSFVNLTQL 207
PIP+SLANLP L L + G I + VG IP + LTQL
Sbjct: 67 PIPSSLANLPYLNFL------YIGGINNL-----------------VGPIPPAIAKLTQL 103
Query: 208 SFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFT 267
+L ++ ++G +P L ++ LVTL S N+L+GT+P + + LP L I NR +
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRIS 162
Query: 268 GSIPSTIFELVNL-TSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANST 326
G+IP + L TS+ +S N L+G I FA L NL ++ LS+N L + DA+
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPP-TFANL-NLAFVDLSRNML----EGDASVL 216
Query: 327 FPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSD 386
F S + + L++N + +D+GK L
Sbjct: 217 F--------------------GSDKNTQKIHLAKNSLA-------FDLGKVGLS------ 243
Query: 387 NFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIF---FSISNNKLTGEIPCSFCTAA 443
KNL LDLR+N + G++ +L F ++S N L GEIP
Sbjct: 244 -----------KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP----QGG 288
Query: 444 PIEFIDLS----NNSLSG-PIPEC 462
++ D+S N L G P+P C
Sbjct: 289 NLQRFDVSAYANNKCLCGSPLPAC 312
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 108/255 (42%), Gaps = 47/255 (18%)
Query: 419 PRLIFFSISN-NKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLN 477
P L F I N L G IP + + ++ +++ ++SG IP+ L TL+ LD N
Sbjct: 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN 135
Query: 478 SFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRL-QVLNVANNRIDDTFPHWLA 536
+ +G++P ++ LV + + N+ G +P S + S+L + ++ NR+ P A
Sbjct: 136 ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195
Query: 537 QLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGS 596
L L +DLSRN G +++ GS
Sbjct: 196 NL---------------------------NLAFVDLSRNMLEGD---------ASVLFGS 219
Query: 597 NTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLL 656
+ +T ++ S F L + + N+ +D +NR G +P+ + +L L
Sbjct: 220 DKNTQKIHLAKN-----SLAFDLGKVGLSKNLNG----LDLRNNRIYGTLPQGLTQLKFL 270
Query: 657 KMLNFSHNHLTGRIP 671
LN S N+L G IP
Sbjct: 271 HSLNVSFNNLCGEIP 285
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 121/293 (41%), Gaps = 58/293 (19%)
Query: 3 TGQVIGLDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNL 62
T +V LDLS L P SSL LPYL L +G + I +L L +L +
Sbjct: 49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108
Query: 63 SNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTI 122
+++ SG IP +SQ+ +++LD S N P +++ L LV D
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP-------SISSLPNLVGITFD---- 157
Query: 123 VLDXXXXXXXXXXXXXXXXGCNLIGPIPASLANLPQL-TSLSLSYNHFSGHIPSFLSHXX 181
G + G IP S + +L TS+++S N +G IP
Sbjct: 158 -------------------GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP------ 192
Query: 182 XXXXXXXXXXXXVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSL 241
+F NL L+F+DLS N L G +N + L+ NSL
Sbjct: 193 ------------------TFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233
Query: 242 NGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHI 294
+ + L + LR+NR G++P + +L L S+ +S NNL G I
Sbjct: 234 AFDLGKVGLSK--NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 107/247 (43%), Gaps = 34/247 (13%)
Query: 245 IPSWLFTVLPYLEVIHLRD-NRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLK 303
IPS L LPYL +++ N G IP I +L L + ++ N+SG I +++K
Sbjct: 68 IPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIK 125
Query: 304 NLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNIS-EFPDFLRSQDRL-EWLQLSEN 361
L L S N LS T + S+ P L+ + IS PD S +L + +S N
Sbjct: 126 TLVTLDFSYNALS-GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184
Query: 362 KIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVL---P 418
++ G+IP F ++ NL F+DL N+L+G VL
Sbjct: 185 RLTGKIPPTFANL------------------------NLAFVDLSRNMLEGDASVLFGSD 220
Query: 419 PRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNS 478
++ N L ++ + + +DL NN + G +P+ L L L++ N+
Sbjct: 221 KNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279
Query: 479 FNGSIPQ 485
G IPQ
Sbjct: 280 LCGEIPQ 286
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 12/170 (7%)
Query: 6 VIGLDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISL-THLNLSN 64
++ LD S + L G++P S+ LP L + N S I +G L T + +S
Sbjct: 127 LVTLDFSYNALSGTLPP--SISSLPNLVGITFDGNRI-SGAIPDSYGSFSKLFTSMTISR 183
Query: 65 SYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVL 124
+ +G+IP + L+ + +DLS+N + ++ V G +N K+ + +++
Sbjct: 184 NRLTGKIPPTFANLN-LAFVDLSRN-MLEGDASVLFGSDKNTQKI------HLAKNSLAF 235
Query: 125 DXXXXXXXXXXXXXXXXGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIP 174
D + G +P L L L SL++S+N+ G IP
Sbjct: 236 DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 142/562 (25%), Positives = 227/562 (40%), Gaps = 91/562 (16%)
Query: 197 IPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYL 256
IPD + ++ L+L+ NQL P+ L L NS++ P L +LP L
Sbjct: 19 IPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPE-LCQILPLL 75
Query: 257 EVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLS 316
+V++L+ N + T NLT + L SN++ I+ F KNL L LS N LS
Sbjct: 76 KVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHK-IKSNPFKNQKNLIKLDLSHNGLS 134
Query: 317 VNTKLDANSTF--------------------------PKLLKLGLSACNISEF-PDFLRS 349
+TKL L KL LS+ + EF P ++
Sbjct: 135 -STKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQT 193
Query: 350 QDRLEWLQLSENKIYGRIPNWF-WDIGKDTLYNLNLSDNFLTDVEQVPLKNLRF-----L 403
+L L L+ ++ + W++ ++ NL+L++N L + L++ L
Sbjct: 194 IGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQL 253
Query: 404 DLRSNLLQ----GSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDL----SNNSL 455
DL N L GS L P L + S+ N + P SF + + ++ L + S+
Sbjct: 254 DLSYNNLHDVGNGSFSYL-PSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSV 312
Query: 456 S-GPIPECLVDSITLIWLDL--HLNSFNGSIPQISANG-SGLVNLILNDNQFEGPLPQSL 511
S P +D + WL +LN + +IP +N +GLV SL
Sbjct: 313 SLASHPN--IDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLV---------------SL 355
Query: 512 ANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILD 571
S + ++TF LA P LL L L N + T + + +LRILD
Sbjct: 356 KYLSLSKTFTSLQTLTNETFVS-LAHSP-LLTLNLTKNHISKIANGTFSWL--GQLRILD 411
Query: 572 LSRNEFTGVLPTRYFQNLKAMM-------RGSNTSTVQVQYMHRFGRYYSAFFTLKGIDV 624
L NE L + ++ L+ + + ST + R LK +D+
Sbjct: 412 LGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDI 471
Query: 625 E---MNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLT--------GRIPSS 673
L ++D S+N +++ L L++L+F HN+L G +
Sbjct: 472 SPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNF 531
Query: 674 LRNLTVLESLDLSSNRLVGQIP 695
L+ L+ L L+L SN L +IP
Sbjct: 532 LKGLSHLHILNLESNGL-DEIP 552
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 103/225 (45%), Gaps = 21/225 (9%)
Query: 200 SFVNLTQLSFLDLSWNQLTGRLPSC-LKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEV 258
+F L QL LDL N++ +L +GLRN+ + LS N + + F ++P L+
Sbjct: 400 TFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKY-LQLSTSSFALVPSLQR 458
Query: 259 IHLRDNRFTGS--IPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLS 316
+ LR PS L NLT + LS+NN+ +I + L+NL+ L N L+
Sbjct: 459 LMLRRVALKNVDISPSPFRPLRNLTILDLSNNNI-ANINEDLLEGLENLEILDFQHNNLA 517
Query: 317 VNTKLDANSTFPKLLKLGLSACNI--------SEFP-DFLRSQDRLEWLQLSENKIYGRI 367
K AN P GLS +I E P ++ L+ + L N +
Sbjct: 518 RLWK-RANPGGPVNFLKGLSHLHILNLESNGLDEIPVGVFKNLFELKSINLGLNNLNKLE 576
Query: 368 PNWFWDIGKDTLYNLNLSDNFLTDVEQ----VPLKNLRFLDLRSN 408
P F D + +L +LNL N +T VE+ P +NL LD+R N
Sbjct: 577 PFIFDD--QTSLRSLNLQKNLITSVEKDVFGPPFQNLNSLDMRFN 619
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 109/269 (40%), Gaps = 45/269 (16%)
Query: 29 LPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLS----KMLSL 84
L YLE LN+ N+ S+ S+ F L+SL +L+LS ++ S Q + + +S +L+L
Sbjct: 328 LKYLEYLNMDDNNIPST-KSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTL 386
Query: 85 DLSKNDEVRIESPV--WKGLIENLTKLKELVLSEVDMSTIVLDXXXXXXXXXXXXXXXXG 142
+L+KN +I + W G + ++ +L L+E++ G
Sbjct: 387 NLTKNHISKIANGTFSWLGQL----RILDLGLNEIEQK--------------LSGQEWRG 428
Query: 143 CNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHXXXXXXXXXXXXXXVGGIPDSFV 202
I I S QL++ S + +PS V P F
Sbjct: 429 LRNIFEIYLSYNKYLQLSTSSFAL------VPSL-----QRLMLRRVALKNVDISPSPFR 477
Query: 203 NLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSL-------NGTIPSWLFTVLPY 255
L L+ LDLS N + L+GL NL L N+L N P L +
Sbjct: 478 PLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSH 537
Query: 256 LEVIHLRDNRFTGSIPSTIFE-LVNLTSI 283
L +++L N IP +F+ L L SI
Sbjct: 538 LHILNLESNGL-DEIPVGVFKNLFELKSI 565
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 65/117 (55%), Gaps = 4/117 (3%)
Query: 200 SFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVI 259
+F LT+L++L+L +NQL L L TL L+ N L ++P +F L L+ +
Sbjct: 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKL 112
Query: 260 HLRDNRFTGSIPSTIFE-LVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRL 315
+L N+ S+PS +F+ L L +RL++N L I F +L NLQ L LS N+L
Sbjct: 113 YLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQL 167
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 65/117 (55%), Gaps = 4/117 (3%)
Query: 200 SFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVI 259
+F LT+L++L+L +NQL L L TL L+ N L ++P +F L L+ +
Sbjct: 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKL 112
Query: 260 HLRDNRFTGSIPSTIFE-LVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRL 315
+L N+ S+PS +F+ L L +RL++N L I F +L NLQ L LS N+L
Sbjct: 113 YLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQL 167
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 81/178 (45%), Gaps = 8/178 (4%)
Query: 200 SFVNLTQLSFLDLSWN-QLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEV 258
+F L L LDLS N QL P+ GL L TL L L P LF L L+
Sbjct: 75 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG-LFRGLAALQY 133
Query: 259 IHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVN 318
++L+DN T +L NLT + L N +S E F L +L L L QNR++ +
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER-AFRGLHSLDRLLLHQNRVA-H 191
Query: 319 TKLDANSTFPKLLKLGLSACNISEFP-DFLRSQDRLEWLQLSENKIYGRI---PNWFW 372
A +L+ L L A N+S P + L L++L+L++N P W W
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW 249
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 81/178 (45%), Gaps = 8/178 (4%)
Query: 200 SFVNLTQLSFLDLSWN-QLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEV 258
+F L L LDLS N QL P+ GL L TL L L P LF L L+
Sbjct: 74 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG-LFRGLAALQY 132
Query: 259 IHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVN 318
++L+DN T +L NLT + L N +S E F L +L L L QNR++ +
Sbjct: 133 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER-AFRGLHSLDRLLLHQNRVA-H 190
Query: 319 TKLDANSTFPKLLKLGLSACNISEFP-DFLRSQDRLEWLQLSENKIYGRI---PNWFW 372
A +L+ L L A N+S P + L L++L+L++N P W W
Sbjct: 191 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW 248
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 114/282 (40%), Gaps = 29/282 (10%)
Query: 199 DSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEV 258
++F L L L+LS+N L S GL + + L N + I F L L+
Sbjct: 308 EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI-AIIQDQTFKFLEKLQT 366
Query: 259 IHLRDN-----RFTGSIPSTIFE--------LVNLTS--IRLSSNNLSGHIELCMFARLK 303
+ LRDN F SIP +NLT+ I LS N L L R+
Sbjct: 367 LDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVP 426
Query: 304 NLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLS------ACNISEFPDFLRSQDRLEWLQ 357
+LQ L L+QNR S + S P L +L L A D L+ L
Sbjct: 427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLY 486
Query: 358 LSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPL-KNLRFLDLRSNLLQGSVMV 416
L+ N + P F + L L+L+ N LT + L NL LD+ N L
Sbjct: 487 LNHNYLNSLPPGVFSHLT--ALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPD 544
Query: 417 LPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGP 458
+ L I++NK E C T I +++ +N +++GP
Sbjct: 545 VFVSLSVLDITHNKFICE--CELSTF--INWLNHTNVTIAGP 582
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 76/164 (46%), Gaps = 34/164 (20%)
Query: 538 LPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTG----VLPTRYFQNLKAMM 593
LP L +L L S+K Y L + DA F L L R F G VL YF+NLKA+
Sbjct: 72 LPNLRILDLGSSKIYFL--HPDA---FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126
Query: 594 R-GSNTSTVQVQYMH-RFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVG 651
R + + ++ Y+H FG+ S LK ID N IFLV E ++ + G
Sbjct: 127 RLDLSKNQIRSLYLHPSFGKLNS----LKSIDFSSN--QIFLVC-------EHELEPLQG 173
Query: 652 KLNLLKMLNFSHNHLTGRIP-------SSLRNLTVLESLDLSSN 688
K L + + N L R+ + RN+ VLE LD+S N
Sbjct: 174 K--TLSFFSLAANSLYSRVSVDWGKCMNPFRNM-VLEILDVSGN 214
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 122/561 (21%), Positives = 220/561 (39%), Gaps = 87/561 (15%)
Query: 199 DSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSL-NGTIPSWLFTVLPYLE 257
++F NL L LDL +++ P +GL +L LRL L + + F L L
Sbjct: 67 EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126
Query: 258 VIHLRDNRFTG-SIPSTIFELVNLTSIRLSSNNLSGHIELCMFA----RLKNLQYLYLSQ 312
+ L N+ + + +L +L SI SSN + +C + K L + L+
Sbjct: 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI---FLVCEHELEPLQGKTLSFFSLAA 183
Query: 313 NRLSVNTKLDANSTFPKLLKLGLSACNIS----------EFPDFLRSQDRLEWLQLSE-- 360
N L +D + L ++S F + + +
Sbjct: 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243
Query: 361 ------NKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQ---VPLKNLRFLDL---RSN 408
+ I N F + + ++ +L+LS F+ + LK+L+ L+L + N
Sbjct: 244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN 303
Query: 409 LLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSIT 468
+ L ++S N L +F + +IDL N ++ +
Sbjct: 304 KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK 363
Query: 469 LIWLDLHLNS-----FNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVA 523
L LDL N+ F SIP I +G+ LV L P AN +++++
Sbjct: 364 LQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTL---------PKINLTAN-----LIHLS 409
Query: 524 NNRIDD-TFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLP 582
NR+++ ++L ++P L +LIL N+F G+ P L L L N
Sbjct: 410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN-PSLEQLFLGENMLQLAWE 468
Query: 583 TRYFQNLKAMMRGSNTSTVQVQYM-HRFGR-----YYSAFFTLKGIDVEMNILSIFLVID 636
T ++ + S +QV Y+ H + +S L+G+ + N L++ D
Sbjct: 469 TELCWDVFEGL-----SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND 523
Query: 637 FSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPT 696
+N L++L+ S N L P +L+V LD++ N+ + +
Sbjct: 524 LPAN---------------LEILDISRNQLLAPNPDVFVSLSV---LDITHNKFICE--C 563
Query: 697 QLTSLNFLSKLNLSHNQLEGP 717
+L++ F++ LN ++ + GP
Sbjct: 564 ELST--FINWLNHTNVTIAGP 582
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 648 EVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLV----GQIPTQLTSLNF 703
+V L+ L++L +HN+L P +LT L L L+SNRL +P
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN------ 527
Query: 704 LSKLNLSHNQLEGPIP 719
L L++S NQL P P
Sbjct: 528 LEILDISRNQLLAPNP 543
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 107/287 (37%), Gaps = 52/287 (18%)
Query: 1 MVTGQVIGLDLSCSWLHGSIPS-NSSLF-LLPYLETLNLGSNDFNSSLISSGFGRLISLT 58
+ V LDLS HG + S NS +F L L+ LNL N N + F L +L
Sbjct: 263 LARSSVRHLDLS----HGFVFSLNSRVFETLKDLKVLNLAYNKINK-IADEAFYGLDNLQ 317
Query: 59 HLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVD 118
LNLS + S L K+ +DL KN I+ +K L KL+ L L +
Sbjct: 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF----LEKLQTLDLRDNA 373
Query: 119 MSTI-----VLDXXXXXXXXXXXXXXXXGCNLIGPIPASLANL---------PQLTSLSL 164
++TI + D NLI L NL P L L L
Sbjct: 374 LTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILIL 433
Query: 165 SYNHFSGHIPSFLSHXXXXXXXXXXXXXXVGGIPDSFVNLTQL----SFLDLSWNQLTGR 220
+ N FS P +L QL + L L+W T
Sbjct: 434 NQNRFSS--------------------CSGDQTPSENPSLEQLFLGENMLQLAWE--TEL 471
Query: 221 LPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFT 267
+GL +L L L+ N LN ++P +F+ L L + L NR T
Sbjct: 472 CWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLT 517
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 82/178 (46%), Gaps = 8/178 (4%)
Query: 200 SFVNLTQLSFLDLSWN-QLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEV 258
+F LT L LDLS N QL P+ +GL +L TL L L P LF L L+
Sbjct: 74 AFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPG-LFRGLAALQY 132
Query: 259 IHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVN 318
++L+DN +T +L NLT + L N + E F L +L L L QN ++
Sbjct: 133 LYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEH-AFRGLHSLDRLLLHQNHVA-R 190
Query: 319 TKLDANSTFPKLLKLGLSACNISEFP-DFLRSQDRLEWLQLSENKIYGRI---PNWFW 372
A +L+ L L A N+S P + L L++L+L++N P W W
Sbjct: 191 VHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPWVCDCRARPLWAW 248
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 124/271 (45%), Gaps = 24/271 (8%)
Query: 199 DSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEV 258
D F + L L+L+ N ++ P L NL TL L N L IP +FT L L
Sbjct: 50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTK 108
Query: 259 IHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVN 318
+ + +N+ + +L NL S+ + N+L +I F+ L +L+ L L + L+ +
Sbjct: 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT-S 166
Query: 319 TKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFW--DIGK 376
+A S L+ L L NI+ D+ S RL L++ E I +W + +
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNINAIRDY--SFKRLYRLKVLE------ISHWPYLDTMTP 218
Query: 377 DTLYNLNLSDNFLT--DVEQVP------LKNLRFLDLRSN---LLQGSVMVLPPRLIFFS 425
+ LY LNL+ +T ++ VP L LRFL+L N ++GS++ RL
Sbjct: 219 NCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQ 278
Query: 426 ISNNKLTGEIPCSFCTAAPIEFIDLSNNSLS 456
+ +L P +F + +++S N L+
Sbjct: 279 LVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%)
Query: 649 VVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLN 708
V L L+ LN S+N ++ S L L L+ + L +L P LN+L LN
Sbjct: 243 AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLN 302
Query: 709 LSHNQL 714
+S NQL
Sbjct: 303 VSGNQL 308
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 39/99 (39%)
Query: 143 CNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHXXXXXXXXXXXXXXVGGIPDSFV 202
CNL ++ +L L L+LSYN S S L P +F
Sbjct: 234 CNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR 293
Query: 203 NLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSL 241
L L L++S NQLT S + NL TL L N L
Sbjct: 294 GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 201 FVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIH 260
F L L L+L NQLTG P+ +G ++ L+L N + I + +F L L+ ++
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLN 108
Query: 261 LRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFAR 301
L DN+ + +P + L +LTS+ L+SN + + L FA
Sbjct: 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE 149
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 232 VTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLS 291
L L+ N L LF LP+L + L+ N+ TG P+ ++ ++L N +
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 292 GHIELCMFARLKNLQYLYLSQNRLSV 317
I MF L L+ L L N++S
Sbjct: 92 -EISNKMFLGLHQLKTLNLYDNQISC 116
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 61/160 (38%), Gaps = 32/160 (20%)
Query: 419 PRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNS 478
P L+ + N+LTG P +F A+ I+ + L N + + ++L LH
Sbjct: 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK--------EISNKMFLGLHQ-- 103
Query: 479 FNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRID-DTFPHWLAQ 537
L L L DNQ +P S + + L LN+A+N + + W A+
Sbjct: 104 --------------LKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE 149
Query: 538 LPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEF 577
LR G A ++I DL +EF
Sbjct: 150 W-------LRKKSLNGGAARCGAPSKVRDVQIKDLPHSEF 182
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%)
Query: 651 GKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLS 710
G+L L L N LTG P++ + ++ L L N++ L+ L LNL
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110
Query: 711 HNQLEGPIP 719
NQ+ +P
Sbjct: 111 DNQISCVMP 119
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 56/141 (39%), Gaps = 32/141 (22%)
Query: 32 LETLNLGSNDFNSSLISSG--FGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKN 89
L T L ND ISS FGRL L L L + +G P+ S + L L +N
Sbjct: 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88
Query: 90 DEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDXXXXXXXXXXXXXXXXGCNLIGPI 149
I + ++ GL +LK L L + +S + +
Sbjct: 89 KIKEISNKMFLGL----HQLKTLNLYDNQISCV--------------------------M 118
Query: 150 PASLANLPQLTSLSLSYNHFS 170
P S +L LTSL+L+ N F+
Sbjct: 119 PGSFEHLNSLTSLNLASNPFN 139
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 7/106 (6%)
Query: 446 EFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEG 505
E +S++ L G +P L+ L+L N G P S + L L +N+ +
Sbjct: 40 ELGRISSDGLFGRLPH-------LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92
Query: 506 PLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKF 551
+ +L+ LN+ +N+I P L L L L SN F
Sbjct: 93 ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 104/370 (28%), Positives = 165/370 (44%), Gaps = 43/370 (11%)
Query: 203 NLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLR 262
NLTQ++F S NQLT P LK L LV + ++ N + P L L + L
Sbjct: 64 NLTQINF---SNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLF 115
Query: 263 DNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLD 322
+N+ T P + L NL + LSSN +S ++ + L +LQ L S N++ T L
Sbjct: 116 NNQITDIDP--LKNLTNLNRLELSSNTIS---DISALSGLTSLQQLSFSSNQV---TDLK 167
Query: 323 ANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDT-LYN 381
+ L +L +S+ +S+ L LE L + N+I P +G T L
Sbjct: 168 PLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP-----LGILTNLDE 221
Query: 382 LNLSDNFLTDVEQVP-LKNLRFLDLRSNLLQGSVMVLPP-----RLIFFSISNNKLTGEI 435
L+L+ N L D+ + L NL LDL +N + L P +L + N+++
Sbjct: 222 LSLNGNQLKDIGTLASLTNLTDLDLANNQISN----LAPLSGLTKLTELKLGANQISNIS 277
Query: 436 PCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVN 495
P + TA + ++L+ N L P + ++T +L L+ N+ + P S + L
Sbjct: 278 PLAGLTA--LTNLELNENQLEDISPISNLKNLT--YLTLYFNNISDISPVSSL--TKLQR 331
Query: 496 LILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLI 555
L ++N+ SLAN + + L+ +N+I D P LA L + L L +
Sbjct: 332 LFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 387
Query: 556 GNTDARVIFP 565
N A V P
Sbjct: 388 VNYKANVSIP 397
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 90/322 (27%), Positives = 137/322 (42%), Gaps = 49/322 (15%)
Query: 201 FVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIH 260
NLT L+ L L NQ+T P LK L NL L LS N+++ + L L+ +
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI---SALSGLTSLQQLS 157
Query: 261 LRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTK 320
N+ T P + L L + +SSN +S ++ + A+L NL+ L + N++S T
Sbjct: 158 FSSNQVTDLKP--LANLTTLERLDISSNKVS---DISVLAKLTNLESLIATNNQISDITP 212
Query: 321 LDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIP------------ 368
L L +L L+ + + L S L L L+ N+I P
Sbjct: 213 L---GILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 268
Query: 369 --NWFWDI----GKDTLYNLNLSDNFLTDVEQVP-LKNLRFLDLR----SNLLQGSVMVL 417
N +I G L NL L++N L D+ + LKNL +L L S++ S +
Sbjct: 269 GANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTK 328
Query: 418 PPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLI------W 471
RL F SNNK++ S I ++ +N +S P + IT + W
Sbjct: 329 LQRLFF---SNNKVSD--VSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAW 383
Query: 472 LDLHLN-SFNGSIPQISANGSG 492
+ +N N SIP N +G
Sbjct: 384 TNAPVNYKANVSIPNTVKNVTG 405
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 59/117 (50%), Gaps = 10/117 (8%)
Query: 200 SFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVI 259
+ +LT L+ LDL+ NQ++ P L GL L L+L N ++ P T L LE
Sbjct: 234 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLE-- 289
Query: 260 HLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLS 316
L +N+ P I L NLT + L NN+S ++ + L LQ L+ S N++S
Sbjct: 290 -LNENQLEDISP--ISNLKNLTYLTLYFNNIS---DISPVSSLTKLQRLFFSNNKVS 340
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 656 LKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLE 715
L+ L+FS N +T P L NLT LE LD+SSN+ V I L L L L ++NQ+
Sbjct: 153 LQQLSFSSNQVTDLKP--LANLTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQIS 208
Query: 716 GPIPQG 721
P G
Sbjct: 209 DITPLG 214
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 634 VIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQ 693
V ++R + + V LN L +NFS+N LT P L+NLT L + +++N++
Sbjct: 43 VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI 100
Query: 694 IPTQLTSLNFLSKLNLSHNQLEGPIP 719
P L +L L+ L L +NQ+ P
Sbjct: 101 TP--LANLTNLTGLTLFNNQITDIDP 124
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 119/450 (26%), Positives = 185/450 (41%), Gaps = 81/450 (18%)
Query: 197 IPDSFVNLTQLSFLDLSWNQLTGRLPSC-LKGLRNLVTLRLSGNSLNGTIPSWLFTVLPY 255
+PD T ++ L+L+ NQL RLP+ L +L + N+++ P L LP
Sbjct: 24 VPDDLP--TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPM 79
Query: 256 LEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRL 315
L+V++L+ N + T NLT + L SN++ I+ F + KNL L LS N L
Sbjct: 80 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGL 138
Query: 316 SVNTKLDANSTFPKLLKLGLSACNI----SEFPDFLRSQDRLEWLQLSENKIYGRIPNWF 371
S +TKL L +L LS I SE D + L+ L+LS N+I P F
Sbjct: 139 S-STKLGTQVQLENLQELLLSNNKIQALKSEELDIF-ANSSLKKLELSSNQIKEFSPGCF 196
Query: 372 WDIGK-------------------------DTLYNLNLSDNFLTDVEQVPL-----KNLR 401
IG+ ++ NL+LS++ L+ NL
Sbjct: 197 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT 256
Query: 402 FLDLRS---NLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDL----SNNS 454
LDL N++ P+L +F + N + S + +++L + S
Sbjct: 257 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 316
Query: 455 LS-GPIPECLVDSITLIWLDL--HLNSFNGSIPQISANG-SGLVNL-------------I 497
+S +P+ +D + WL HLN + IP I +N +GL+NL
Sbjct: 317 ISLASLPK--IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 374
Query: 498 LNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGN 557
L + F SLA+ S L +LN+ N+I + L L VL L N+ +
Sbjct: 375 LTNETF-----VSLAH-SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 428
Query: 558 TDAR-------VIFPKLRILDLSRNEFTGV 580
+ R + + L L+RN F V
Sbjct: 429 QEWRGLENIFEIYLSYNKYLQLTRNSFALV 458
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 95/359 (26%), Positives = 145/359 (40%), Gaps = 62/359 (17%)
Query: 29 LPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLS----L 84
L LE LN+ ND + S+ F LI+L +L+LSNS+ S + + + +S S L
Sbjct: 333 LKCLEHLNMEDNDI-PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 391
Query: 85 DLSKNDEVRIESPV--WKGLIENLTKLKELVLSEVDMSTIVLDXXXXXXXXXXXXXXXXG 142
+L+KN +IES W G +E L +L L+E+ G
Sbjct: 392 NLTKNKISKIESDAFSWLGHLEVL----DLGLNEI------------------------G 423
Query: 143 CNLIGPIPASLANLPQL-----TSLSLSYNHFSGHIPSFLSHXXXXXXXXXXXXXXVGGI 197
L G L N+ ++ L L+ N F+ +PS V
Sbjct: 424 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL-VPSL-----QRLMLRRVALKNVDSS 477
Query: 198 PDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSL-------NGTIPSWLF 250
P F L L+ LDLS N + L+GL L L L N+L N P +
Sbjct: 478 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFL 537
Query: 251 TVLPYLEVIHLRDNRFTGSIPSTIF-ELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLY 309
L +L +++L N F IP +F +L L I L NNL+ + +F +L+ L
Sbjct: 538 KGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNT-LPASVFNNQVSLKSLN 595
Query: 310 LSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIP 368
L +N ++ K F L +L + F F + + + W N+ + IP
Sbjct: 596 LQKNLITSVEKKVFGPAFRNLTELDM------RFNPFDCTCESIAWFVNWINETHTNIP 648
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 34/80 (42%)
Query: 635 IDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQI 694
+D N PE+ KL +LK+LN HN L+ + T L L L SN +
Sbjct: 59 LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 118
Query: 695 PTQLTSLNFLSKLNLSHNQL 714
L L+LSHN L
Sbjct: 119 NNPFVKQKNLITLDLSHNGL 138
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 119/450 (26%), Positives = 185/450 (41%), Gaps = 81/450 (18%)
Query: 197 IPDSFVNLTQLSFLDLSWNQLTGRLPSC-LKGLRNLVTLRLSGNSLNGTIPSWLFTVLPY 255
+PD T ++ L+L+ NQL RLP+ L +L + N+++ P L LP
Sbjct: 29 VPDDLP--TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPM 84
Query: 256 LEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRL 315
L+V++L+ N + T NLT + L SN++ I+ F + KNL L LS N L
Sbjct: 85 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGL 143
Query: 316 SVNTKLDANSTFPKLLKLGLSACNI----SEFPDFLRSQDRLEWLQLSENKIYGRIPNWF 371
S +TKL L +L LS I SE D + L+ L+LS N+I P F
Sbjct: 144 S-STKLGTQVQLENLQELLLSNNKIQALKSEELDIF-ANSSLKKLELSSNQIKEFSPGCF 201
Query: 372 WDIGK-------------------------DTLYNLNLSDNFLTDVEQVPL-----KNLR 401
IG+ ++ NL+LS++ L+ NL
Sbjct: 202 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT 261
Query: 402 FLDLRS---NLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDL----SNNS 454
LDL N++ P+L +F + N + S + +++L + S
Sbjct: 262 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 321
Query: 455 LS-GPIPECLVDSITLIWLDL--HLNSFNGSIPQISANG-SGLVNL-------------I 497
+S +P+ +D + WL HLN + IP I +N +GL+NL
Sbjct: 322 ISLASLPK--IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 379
Query: 498 LNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGN 557
L + F SLA+ S L +LN+ N+I + L L VL L N+ +
Sbjct: 380 LTNETF-----VSLAH-SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 433
Query: 558 TDAR-------VIFPKLRILDLSRNEFTGV 580
+ R + + L L+RN F V
Sbjct: 434 QEWRGLENIFEIYLSYNKYLQLTRNSFALV 463
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 95/359 (26%), Positives = 145/359 (40%), Gaps = 62/359 (17%)
Query: 29 LPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLS----L 84
L LE LN+ ND + S+ F LI+L +L+LSNS+ S + + + +S S L
Sbjct: 338 LKCLEHLNMEDNDI-PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 396
Query: 85 DLSKNDEVRIESPV--WKGLIENLTKLKELVLSEVDMSTIVLDXXXXXXXXXXXXXXXXG 142
+L+KN +IES W G +E L +L L+E+ G
Sbjct: 397 NLTKNKISKIESDAFSWLGHLEVL----DLGLNEI------------------------G 428
Query: 143 CNLIGPIPASLANLPQL-----TSLSLSYNHFSGHIPSFLSHXXXXXXXXXXXXXXVGGI 197
L G L N+ ++ L L+ N F+ +PS V
Sbjct: 429 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL-VPSL-----QRLMLRRVALKNVDSS 482
Query: 198 PDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSL-------NGTIPSWLF 250
P F L L+ LDLS N + L+GL L L L N+L N P +
Sbjct: 483 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFL 542
Query: 251 TVLPYLEVIHLRDNRFTGSIPSTIF-ELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLY 309
L +L +++L N F IP +F +L L I L NNL+ + +F +L+ L
Sbjct: 543 KGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNT-LPASVFNNQVSLKSLN 600
Query: 310 LSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIP 368
L +N ++ K F L +L + F F + + + W N+ + IP
Sbjct: 601 LQKNLITSVEKKVFGPAFRNLTELDM------RFNPFDCTCESIAWFVNWINETHTNIP 653
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 34/80 (42%)
Query: 635 IDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQI 694
+D N PE+ KL +LK+LN HN L+ + T L L L SN +
Sbjct: 64 LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 123
Query: 695 PTQLTSLNFLSKLNLSHNQL 714
L L+LSHN L
Sbjct: 124 NNPFVKQKNLITLDLSHNGL 143
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 112/408 (27%), Positives = 171/408 (41%), Gaps = 79/408 (19%)
Query: 197 IPDSFVNLTQLSFLDLSWNQLTGRLPSC-LKGLRNLVTLRLSGNSLNGTIPSWLFTVLPY 255
+PD T ++ L+L+ NQL RLP+ L +L + N+++ P L LP
Sbjct: 19 VPDDLP--TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPM 74
Query: 256 LEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRL 315
L+V++L+ N + T NLT + L SN++ I+ F + KNL L LS N L
Sbjct: 75 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGL 133
Query: 316 SVNTKLDANSTFPKLLKLGLSACNI----SEFPDFLRSQDRLEWLQLSENKIYGRIPNWF 371
S +TKL L +L LS I SE D + L+ L+LS N+I P F
Sbjct: 134 S-STKLGTQVQLENLQELLLSNNKIQALKSEELDIF-ANSSLKKLELSSNQIKEFSPGCF 191
Query: 372 WDIGK-------------------------DTLYNLNLSDNFLTDVEQVPL-----KNLR 401
IG+ ++ NL+LS++ L+ NL
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT 251
Query: 402 FLDLRS---NLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDL----SNNS 454
LDL N++ P+L +F + N + S + +++L + S
Sbjct: 252 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 311
Query: 455 LS-GPIPECLVDSITLIWLDL--HLNSFNGSIPQISANG-SGLVNL-------------I 497
+S +P+ +D + WL HLN + IP I +N +GL+NL
Sbjct: 312 ISLASLPK--IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369
Query: 498 LNDNQFEGPLPQSLANCSRLQVLNVANNRI----DDTFPHWLAQLPEL 541
L + F SLA+ S L +LN+ N+I D F WL L L
Sbjct: 370 LTNETF-----VSLAH-SPLHILNLTKNKISKIESDAFS-WLGHLEVL 410
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 95/359 (26%), Positives = 145/359 (40%), Gaps = 62/359 (17%)
Query: 29 LPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLS----L 84
L LE LN+ ND + S+ F LI+L +L+LSNS+ S + + + +S S L
Sbjct: 328 LKCLEHLNMEDNDI-PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386
Query: 85 DLSKNDEVRIESPV--WKGLIENLTKLKELVLSEVDMSTIVLDXXXXXXXXXXXXXXXXG 142
+L+KN +IES W G +E L +L L+E+ G
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVL----DLGLNEI------------------------G 418
Query: 143 CNLIGPIPASLANLPQL-----TSLSLSYNHFSGHIPSFLSHXXXXXXXXXXXXXXVGGI 197
L G L N+ ++ L L+ N F+ +PS V
Sbjct: 419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL-VPSL-----QRLMLRRVALKNVDSS 472
Query: 198 PDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSL-------NGTIPSWLF 250
P F L L+ LDLS N + L+GL L L L N+L N P +
Sbjct: 473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFL 532
Query: 251 TVLPYLEVIHLRDNRFTGSIPSTIF-ELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLY 309
L +L +++L N F IP +F +L L I L NNL+ + +F +L+ L
Sbjct: 533 KGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNT-LPASVFNNQVSLKSLN 590
Query: 310 LSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIP 368
L +N ++ K F L +L + F F + + + W N+ + IP
Sbjct: 591 LQKNLITSVEKKVFGPAFRNLTELDM------RFNPFDCTCESIAWFVNWINETHTNIP 643
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 34/80 (42%)
Query: 635 IDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQI 694
+D N PE+ KL +LK+LN HN L+ + T L L L SN +
Sbjct: 54 LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 113
Query: 695 PTQLTSLNFLSKLNLSHNQL 714
L L+LSHN L
Sbjct: 114 NNPFVKQKNLITLDLSHNGL 133
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 104/370 (28%), Positives = 164/370 (44%), Gaps = 43/370 (11%)
Query: 203 NLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLR 262
NLTQ++F S NQLT P LK L LV + ++ N + P L L + L
Sbjct: 64 NLTQINF---SNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLF 115
Query: 263 DNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLD 322
+N+ T P + L NL + LSSN +S ++ + L +LQ L S N++ T L
Sbjct: 116 NNQITDIDP--LKNLTNLNRLELSSNTIS---DISALSGLTSLQQLSFSSNQV---TDLK 167
Query: 323 ANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDT-LYN 381
+ L +L +S+ +S+ L LE L + N+I P +G T L
Sbjct: 168 PLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP-----LGILTNLDE 221
Query: 382 LNLSDNFLTDVEQVP-LKNLRFLDLRSNLLQGSVMVLPP-----RLIFFSISNNKLTGEI 435
L+L+ N L D+ + L NL LDL +N + L P +L + N+++
Sbjct: 222 LSLNGNQLKDIGTLASLTNLTDLDLANNQISN----LAPLSGLTKLTELKLGANQISNIS 277
Query: 436 PCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVN 495
P + TA + ++L+ N L P + ++T +L L+ N+ + P S + L
Sbjct: 278 PLAGLTA--LTNLELNENQLEDISPISNLKNLT--YLTLYFNNISDISPVSSL--TKLQR 331
Query: 496 LILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLI 555
L +N+ SLAN + + L+ +N+I D P LA L + L L +
Sbjct: 332 LFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 387
Query: 556 GNTDARVIFP 565
N A V P
Sbjct: 388 VNYKANVSIP 397
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 137/322 (42%), Gaps = 49/322 (15%)
Query: 201 FVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIH 260
NLT L+ L L NQ+T P LK L NL L LS N+++ + L L+ +
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI---SALSGLTSLQQLS 157
Query: 261 LRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTK 320
N+ T P + L L + +SSN +S ++ + A+L NL+ L + N++S T
Sbjct: 158 FSSNQVTDLKP--LANLTTLERLDISSNKVS---DISVLAKLTNLESLIATNNQISDITP 212
Query: 321 LDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIP------------ 368
L L +L L+ + + L S L L L+ N+I P
Sbjct: 213 L---GILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 268
Query: 369 --NWFWDI----GKDTLYNLNLSDNFLTDVEQVP-LKNLRFLDLR----SNLLQGSVMVL 417
N +I G L NL L++N L D+ + LKNL +L L S++ S +
Sbjct: 269 GANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTK 328
Query: 418 PPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLI------W 471
RL F+ NNK++ S I ++ +N +S P + IT + W
Sbjct: 329 LQRLFFY---NNKVSD--VSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAW 383
Query: 472 LDLHLN-SFNGSIPQISANGSG 492
+ +N N SIP N +G
Sbjct: 384 TNAPVNYKANVSIPNTVKNVTG 405
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 10/117 (8%)
Query: 200 SFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVI 259
+ +LT L+ LDL+ NQ++ P L GL L L+L N ++ P T L LE
Sbjct: 234 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLE-- 289
Query: 260 HLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLS 316
L +N+ P I L NLT + L NN+S ++ + L LQ L+ N++S
Sbjct: 290 -LNENQLEDISP--ISNLKNLTYLTLYFNNIS---DISPVSSLTKLQRLFFYNNKVS 340
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 656 LKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLE 715
L+ L+FS N +T P L NLT LE LD+SSN+ V I L L L L ++NQ+
Sbjct: 153 LQQLSFSSNQVTDLKP--LANLTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQIS 208
Query: 716 GPIPQG 721
P G
Sbjct: 209 DITPLG 214
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 634 VIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQ 693
V ++R + + V LN L +NFS+N LT P L+NLT L + +++N++
Sbjct: 43 VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI 100
Query: 694 IPTQLTSLNFLSKLNLSHNQLEGPIP 719
P L +L L+ L L +NQ+ P
Sbjct: 101 TP--LANLTNLTGLTLFNNQITDIDP 124
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 104/370 (28%), Positives = 164/370 (44%), Gaps = 43/370 (11%)
Query: 203 NLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLR 262
NLTQ++F S NQLT P LK L LV + ++ N + P L L + L
Sbjct: 64 NLTQINF---SNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLF 115
Query: 263 DNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLD 322
+N+ T P + L NL + LSSN +S ++ + L +LQ L S N++ T L
Sbjct: 116 NNQITDIDP--LKNLTNLNRLELSSNTIS---DISALSGLTSLQQLNFSSNQV---TDLK 167
Query: 323 ANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDT-LYN 381
+ L +L +S+ +S+ L LE L + N+I P +G T L
Sbjct: 168 PLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP-----LGILTNLDE 221
Query: 382 LNLSDNFLTDVEQVP-LKNLRFLDLRSNLLQGSVMVLPP-----RLIFFSISNNKLTGEI 435
L+L+ N L D+ + L NL LDL +N + L P +L + N+++
Sbjct: 222 LSLNGNQLKDIGTLASLTNLTDLDLANNQISN----LAPLSGLTKLTELKLGANQISNIS 277
Query: 436 PCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVN 495
P + TA + ++L+ N L P + ++T +L L+ N+ + P S + L
Sbjct: 278 PLAGLTA--LTNLELNENQLEDISPISNLKNLT--YLTLYFNNISDISPVSSL--TKLQR 331
Query: 496 LILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLI 555
L +N+ SLAN + + L+ +N+I D P LA L + L L +
Sbjct: 332 LFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 387
Query: 556 GNTDARVIFP 565
N A V P
Sbjct: 388 VNYKANVSIP 397
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 138/322 (42%), Gaps = 49/322 (15%)
Query: 201 FVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIH 260
NLT L+ L L NQ+T P LK L NL L LS N+++ + L L+ ++
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI---SALSGLTSLQQLN 157
Query: 261 LRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTK 320
N+ T P + L L + +SSN +S ++ + A+L NL+ L + N++S T
Sbjct: 158 FSSNQVTDLKP--LANLTTLERLDISSNKVS---DISVLAKLTNLESLIATNNQISDITP 212
Query: 321 LDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIP------------ 368
L L +L L+ + + L S L L L+ N+I P
Sbjct: 213 L---GILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 268
Query: 369 --NWFWDI----GKDTLYNLNLSDNFLTDVEQVP-LKNLRFLDLR----SNLLQGSVMVL 417
N +I G L NL L++N L D+ + LKNL +L L S++ S +
Sbjct: 269 GANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTK 328
Query: 418 PPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLI------W 471
RL F+ NNK++ S I ++ +N +S P + IT + W
Sbjct: 329 LQRLFFY---NNKVSD--VSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAW 383
Query: 472 LDLHLN-SFNGSIPQISANGSG 492
+ +N N SIP N +G
Sbjct: 384 TNAPVNYKANVSIPNTVKNVTG 405
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 10/117 (8%)
Query: 200 SFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVI 259
+ +LT L+ LDL+ NQ++ P L GL L L+L N ++ P T L LE
Sbjct: 234 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLE-- 289
Query: 260 HLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLS 316
L +N+ P I L NLT + L NN+S ++ + L LQ L+ N++S
Sbjct: 290 -LNENQLEDISP--ISNLKNLTYLTLYFNNIS---DISPVSSLTKLQRLFFYNNKVS 340
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 656 LKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLE 715
L+ LNFS N +T P L NLT LE LD+SSN+ V I L L L L ++NQ+
Sbjct: 153 LQQLNFSSNQVTDLKP--LANLTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQIS 208
Query: 716 GPIPQG 721
P G
Sbjct: 209 DITPLG 214
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 634 VIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQ 693
V ++R + + V LN L +NFS+N LT P L+NLT L + +++N++
Sbjct: 43 VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI 100
Query: 694 IPTQLTSLNFLSKLNLSHNQLEGPIP 719
P L +L L+ L L +NQ+ P
Sbjct: 101 TP--LANLTNLTGLTLFNNQITDIDP 124
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 97/215 (45%), Gaps = 12/215 (5%)
Query: 199 DSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEV 258
+SF +L L L LS N + GL NL TL L N L TIP+ F L L+
Sbjct: 82 NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKE 140
Query: 259 IHLRDNRFTGSIPSTIFELV-NLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSV 317
+ LR+N SIPS F + +L + L +I F L NL+YL L+ L
Sbjct: 141 LWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199
Query: 318 NTKLDANSTFPKLLKLGLSACNISEF-PDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGK 376
L + KL +L LS ++S P + L+ L + +++I N F ++
Sbjct: 200 IPNL---TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL-- 254
Query: 377 DTLYNLNLSDNFLTDVEQ---VPLKNLRFLDLRSN 408
+L +NL+ N LT + PL +L + L N
Sbjct: 255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 8/79 (10%)
Query: 378 TLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPC 437
+L LN+ DN+LTD+ ++P ++L FLD+ N+ G + LPP L + + S+N++
Sbjct: 258 SLEALNVRDNYLTDLPELP-QSLTFLDVSENIFSG-LSELPPNLYYLNASSNEIR----- 310
Query: 438 SFCTAAP-IEFIDLSNNSL 455
S C P +E +++SNN L
Sbjct: 311 SLCDLPPSLEELNVSNNKL 329
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 204 LTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRD 263
L L+ LD+S+N+LT L+GL L L L GN L T+P L T P LE + L +
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 157
Query: 264 NRFTGSIPSTIFE-LVNLTSIRLSSNNL 290
N+ T +P+ + L NL ++ L N+L
Sbjct: 158 NQLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 640 NRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLT 699
+R E +V G L +L L+ SHN L +P + L L LD+S NRL L
Sbjct: 63 DRCELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 700 SLNFLSKLNLSHNQLEGPIPQG 721
L L +L L N+L+ +P G
Sbjct: 122 GLGELQELYLKGNELKT-LPPG 142
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 204 LTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRD 263
L L+ LD+S+N+LT L+GL L L L GN L T+P L T P LE + L +
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 157
Query: 264 NRFTGSIPSTIFELVNLTSIRLSSNNL 290
N+ T + L NL ++ L N+L
Sbjct: 158 NQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 640 NRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLT 699
+R E +V G L +L L+ SHN L +P + L L LD+S NRL L
Sbjct: 63 DRCELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 700 SLNFLSKLNLSHNQLEGPIPQG 721
L L +L L N+L+ +P G
Sbjct: 122 GLGELQELYLKGNELKT-LPPG 142
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 204 LTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRD 263
L L+ LD+S+N+LT L+GL L L L GN L T+P L T P LE + L +
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 157
Query: 264 NRFTGSIPSTIFELVNLTSIRLSSNNL 290
N+ T + L NL ++ L N+L
Sbjct: 158 NQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 640 NRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLT 699
+R E +V G L +L L+ SHN L +P + L L LD+S NRL L
Sbjct: 63 DRCELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 700 SLNFLSKLNLSHNQLEGPIPQG 721
L L +L L N+L+ +P G
Sbjct: 122 GLGELQELYLKGNELKT-LPPG 142
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 59/117 (50%), Gaps = 10/117 (8%)
Query: 200 SFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVI 259
+ +LT L+ LDL+ NQ++ P L GL L L+L N ++ P T L LE
Sbjct: 233 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLE-- 288
Query: 260 HLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLS 316
L +N+ P I L NLT + L NN+S ++ + L LQ L+ S N++S
Sbjct: 289 -LNENQLEDISP--ISNLKNLTYLTLYFNNIS---DISPVSSLTKLQRLFFSNNKVS 339
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 103/370 (27%), Positives = 164/370 (44%), Gaps = 44/370 (11%)
Query: 203 NLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLR 262
NLTQ++F S NQLT P LK L LV + ++ N + P L L + L
Sbjct: 64 NLTQINF---SNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLF 115
Query: 263 DNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLD 322
+N+ T P + L NL + LSSN +S ++ + L +LQ L N++ T L
Sbjct: 116 NNQITDIDP--LKNLTNLNRLELSSNTIS---DISALSGLTSLQQLNFG-NQV---TDLK 166
Query: 323 ANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDT-LYN 381
+ L +L +S+ +S+ L LE L + N+I P +G T L
Sbjct: 167 PLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP-----LGILTNLDE 220
Query: 382 LNLSDNFLTDVEQVP-LKNLRFLDLRSNLLQGSVMVLPP-----RLIFFSISNNKLTGEI 435
L+L+ N L D+ + L NL LDL +N + L P +L + N+++
Sbjct: 221 LSLNGNQLKDIGTLASLTNLTDLDLANNQISN----LAPLSGLTKLTELKLGANQISNIS 276
Query: 436 PCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVN 495
P + TA + ++L+ N L P + ++T +L L+ N+ + P S + L
Sbjct: 277 PLAGLTA--LTNLELNENQLEDISPISNLKNLT--YLTLYFNNISDISPVSSL--TKLQR 330
Query: 496 LILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLI 555
L ++N+ SLAN + + L+ +N+I D P LA L + L L +
Sbjct: 331 LFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 386
Query: 556 GNTDARVIFP 565
N A V P
Sbjct: 387 VNYKANVSIP 396
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 91/322 (28%), Positives = 135/322 (41%), Gaps = 50/322 (15%)
Query: 201 FVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIH 260
NLT L+ L L NQ+T P LK L NL L LS N+++ T L L
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNF-- 158
Query: 261 LRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTK 320
N+ T P + L L + +SSN +S ++ + A+L NL+ L + N++S T
Sbjct: 159 --GNQVTDLKP--LANLTTLERLDISSNKVS---DISVLAKLTNLESLIATNNQISDITP 211
Query: 321 LDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIP------------ 368
L L +L L+ + + L S L L L+ N+I P
Sbjct: 212 L---GILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 267
Query: 369 --NWFWDI----GKDTLYNLNLSDNFLTDVEQVP-LKNLRFLDLR----SNLLQGSVMVL 417
N +I G L NL L++N L D+ + LKNL +L L S++ S +
Sbjct: 268 GANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTK 327
Query: 418 PPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLI------W 471
RL F SNNK++ S I ++ +N +S P + IT + W
Sbjct: 328 LQRLFF---SNNKVSD--VSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAW 382
Query: 472 LDLHLN-SFNGSIPQISANGSG 492
+ +N N SIP N +G
Sbjct: 383 TNAPVNYKANVSIPNTVKNVTG 404
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 634 VIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQ 693
V ++R + + V LN L +NFS+N LT P L+NLT L + +++N++
Sbjct: 43 VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI 100
Query: 694 IPTQLTSLNFLSKLNLSHNQLEGPIP 719
P L +L L+ L L +NQ+ P
Sbjct: 101 TP--LANLTNLTGLTLFNNQITDIDP 124
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 656 LKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLE 715
L+ LNF N +T P L NLT LE LD+SSN+ V I L L L L ++NQ+
Sbjct: 153 LQQLNFG-NQVTDLKP--LANLTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQIS 207
Query: 716 GPIPQG 721
P G
Sbjct: 208 DITPLG 213
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 204 LTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRD 263
L L+ LD+S+N+LT L+GL L L L GN L T+P L T P LE + L +
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 157
Query: 264 NRFTGSIPSTIFELVNLTSIRLSSNNL 290
N+ T + L NL ++ L N+L
Sbjct: 158 NQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 640 NRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLT 699
+R E +V G L +L L+ SHN L +P + L L LD+S NRL L
Sbjct: 63 DRCELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 700 SLNFLSKLNLSHNQLEGPIPQG 721
L L +L L N+L+ +P G
Sbjct: 122 GLGELQELYLKGNELKT-LPPG 142
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 204 LTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRD 263
L L+ LD+S+N+LT L+GL L L L GN L T+P L T P LE + L +
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 157
Query: 264 NRFTGSIPSTIFE-LVNLTSIRLSSNNL 290
N T +P+ + L NL ++ L N+L
Sbjct: 158 NNLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
Query: 252 VLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLS 311
LP L + L N+ S+P L LT + +S N L+ + L L LQ LYL
Sbjct: 75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLK 132
Query: 312 QNRLSVNTKLDANSTFPKLLKLGLSACNISEFP-DFLRSQDRLEWLQLSENKIYGRIPNW 370
N L T PKL KL L+ N++E P L + L+ L L EN +Y IP
Sbjct: 133 GNELKTLPPGLLTPT-PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG 190
Query: 371 FW 372
F+
Sbjct: 191 FF 192
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 640 NRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLT 699
+R E +V G L +L L+ SHN L +P + L L LD+S NRL L
Sbjct: 63 DRAELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 700 SLNFLSKLNLSHNQLEGPIPQG 721
L L +L L N+L+ +P G
Sbjct: 122 GLGELQELYLKGNELKT-LPPG 142
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 204 LTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRD 263
L L+ LD+S+N+LT L+GL L L L GN L T+P L T P LE + L +
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 157
Query: 264 NRFTGSIPSTIFE-LVNLTSIRLSSNNL 290
N T +P+ + L NL ++ L N+L
Sbjct: 158 NNLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 36.6 bits (83), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
Query: 252 VLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLS 311
LP L + L N+ S+P L LT + +S N L+ + L L LQ LYL
Sbjct: 75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLK 132
Query: 312 QNRLSVNTKLDANSTFPKLLKLGLSACNISEFP-DFLRSQDRLEWLQLSENKIYGRIPNW 370
N L T PKL KL L+ N++E P L + L+ L L EN +Y IP
Sbjct: 133 GNELKTLPPGLLTPT-PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG 190
Query: 371 FW 372
F+
Sbjct: 191 FF 192
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 640 NRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLT 699
+R E +V G L +L L+ SHN L +P + L L LD+S NRL L
Sbjct: 63 DRAELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 700 SLNFLSKLNLSHNQLEGPIPQG 721
L L +L L N+L+ +P G
Sbjct: 122 GLGELQELYLKGNELKT-LPPG 142
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 204 LTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRD 263
L L+ LD+S+N+LT L+GL L L L GN L T+P L T P LE + L +
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 157
Query: 264 NRFTGSIPSTIFE-LVNLTSIRLSSNNL 290
N T +P+ + L NL ++ L N+L
Sbjct: 158 NNLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
Query: 252 VLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLS 311
LP L + L N+ S+P L LT + +S N L+ + L L LQ LYL
Sbjct: 75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLK 132
Query: 312 QNRLSVNTKLDANSTFPKLLKLGLSACNISEFP-DFLRSQDRLEWLQLSENKIYGRIPNW 370
N L T PKL KL L+ N++E P L + L+ L L EN +Y IP
Sbjct: 133 GNELKTLPPGLLTPT-PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG 190
Query: 371 FW 372
F+
Sbjct: 191 FF 192
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 640 NRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLT 699
+R E +V G L +L L+ SHN L +P + L L LD+S NRL L
Sbjct: 63 DRAELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 700 SLNFLSKLNLSHNQLEGPIPQG 721
L L +L L N+L+ +P G
Sbjct: 122 GLGELQELYLKGNELKT-LPPG 142
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 204 LTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRD 263
L L+ LD+S+N+LT L+GL L L L GN L T+P L T P LE + L +
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 157
Query: 264 NRFTGSIPSTIFE-LVNLTSIRLSSNNL 290
N T +P+ + L NL ++ L N+L
Sbjct: 158 NDLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 640 NRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLT 699
+R E +V G L +L L+ SHN L +P + L L LD+S NRL L
Sbjct: 63 DRCELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 700 SLNFLSKLNLSHNQLEGPIPQG 721
L L +L L N+L+ +P G
Sbjct: 122 GLGELQELYLKGNELKT-LPPG 142
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 204 LTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRD 263
L L+ LD+S+N+LT L+GL L L L GN L T+P L T P LE + L +
Sbjct: 100 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 158
Query: 264 NRFTGSIPSTIFELVNLTSIRLSSNNL 290
N T + L NL ++ L N+L
Sbjct: 159 NNLTELPAGLLNGLENLDTLLLQENSL 185
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
Query: 252 VLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLS 311
LP L + L N+ S+P L LT + +S N L+ + L L LQ LYL
Sbjct: 76 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLK 133
Query: 312 QNRLSVNTKLDANSTFPKLLKLGLSACNISEFP-DFLRSQDRLEWLQLSENKIYGRIPNW 370
N L T PKL KL L+ N++E P L + L+ L L EN +Y IP
Sbjct: 134 GNELKTLPPGLLTPT-PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG 191
Query: 371 FW 372
F+
Sbjct: 192 FF 193
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 640 NRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLT 699
+R E +V G L +L L+ SHN L +P + L L LD+S NRL L
Sbjct: 64 DRCELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALR 122
Query: 700 SLNFLSKLNLSHNQLEGPIPQG 721
L L +L L N+L+ +P G
Sbjct: 123 GLGELQELYLKGNELKT-LPPG 143
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 204 LTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRD 263
L L+ LD+S+N+LT L+GL L L L GN L T+P L T P LE + L +
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 157
Query: 264 NRFTGSIPSTIFELVNLTSIRLSSNNL 290
N T + L NL ++ L N+L
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
Query: 252 VLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLS 311
LP L + L N+ S+P L LT + +S N L+ + L L LQ LYL
Sbjct: 75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLK 132
Query: 312 QNRLSVNTKLDANSTFPKLLKLGLSACNISEFP-DFLRSQDRLEWLQLSENKIYGRIPNW 370
N L T PKL KL L+ N++E P L + L+ L L EN +Y IP
Sbjct: 133 GNELKTLPPGLLTPT-PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG 190
Query: 371 FW 372
F+
Sbjct: 191 FF 192
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 640 NRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLT 699
+R E +V G L +L L+ SHN L +P + L L LD+S NRL L
Sbjct: 63 DRCELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 700 SLNFLSKLNLSHNQLEGPIPQG 721
L L +L L N+L+ +P G
Sbjct: 122 GLGELQELYLKGNELKT-LPPG 142
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 564 FPKLRILDLSRNEFTGVLPTRY--FQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKG 621
FP+L++LDLSR E + Y +L ++ N +Q + G + K
Sbjct: 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP----IQSL-ALGAFSGLSSLQKL 105
Query: 622 IDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTG-RIPSSLRNLTVL 680
+ VE N+ S+ P +G L LK LN +HN + ++P NLT L
Sbjct: 106 VAVETNLASL------------ENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151
Query: 681 ESLDLSSNRLVGQIPTQLTSLN 702
E LDLSSN++ T L L+
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLH 173
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 564 FPKLRILDLSRNEFTGVLPTRY--FQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKG 621
FP+L++LDLSR E + Y +L ++ N +Q + G + K
Sbjct: 53 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP----IQSL-ALGAFSGLSSLQKL 107
Query: 622 IDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTG-RIPSSLRNLTVL 680
+ VE N+ S+ P +G L LK LN +HN + ++P NLT L
Sbjct: 108 VAVETNLASL------------ENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 153
Query: 681 ESLDLSSNRLVGQIPTQLTSLN 702
E LDLSSN++ T L L+
Sbjct: 154 EHLDLSSNKIQSIYCTDLRVLH 175
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 564 FPKLRILDLSRNEFTGVLPTRY--FQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKG 621
FP+L++LDLSR E + Y +L ++ N +Q + G + K
Sbjct: 52 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP----IQSL-ALGAFSGLSSLQKL 106
Query: 622 IDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTG-RIPSSLRNLTVL 680
+ VE N+ S+ P +G L LK LN +HN + ++P NLT L
Sbjct: 107 VAVETNLASL------------ENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 152
Query: 681 ESLDLSSNRLVGQIPTQLTSLN 702
E LDLSSN++ T L L+
Sbjct: 153 EHLDLSSNKIQSIYCTDLRVLH 174
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 10/117 (8%)
Query: 200 SFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVI 259
+ +LT L+ LDL+ NQ++ P L GL L L+L N ++ P T L LE
Sbjct: 237 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLE-- 292
Query: 260 HLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLS 316
L +N+ P I L NLT + L NN+S ++ + L LQ L+ + N++S
Sbjct: 293 -LNENQLEDISP--ISNLKNLTYLTLYFNNIS---DISPVSSLTKLQRLFFANNKVS 343
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 103/370 (27%), Positives = 163/370 (44%), Gaps = 44/370 (11%)
Query: 203 NLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLR 262
NLTQ++F S NQLT P LK L LV + ++ N + P L L + L
Sbjct: 68 NLTQINF---SNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLF 119
Query: 263 DNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLD 322
+N+ T P + L NL + LSSN +S ++ + L +LQ L N++ T L
Sbjct: 120 NNQITDIDP--LKNLTNLNRLELSSNTIS---DISALSGLTSLQQLSFG-NQV---TDLK 170
Query: 323 ANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDT-LYN 381
+ L +L +S+ +S+ L LE L + N+I P +G T L
Sbjct: 171 PLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITP-----LGILTNLDE 224
Query: 382 LNLSDNFLTDVEQVP-LKNLRFLDLRSNLLQGSVMVLPP-----RLIFFSISNNKLTGEI 435
L+L+ N L D+ + L NL LDL +N + L P +L + N+++
Sbjct: 225 LSLNGNQLKDIGTLASLTNLTDLDLANNQISN----LAPLSGLTKLTELKLGANQISNIS 280
Query: 436 PCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVN 495
P + TA + ++L+ N L P + ++T +L L+ N+ + P S + L
Sbjct: 281 PLAGLTA--LTNLELNENQLEDISPISNLKNLT--YLTLYFNNISDISPVSSL--TKLQR 334
Query: 496 LILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLI 555
L +N+ SLAN + + L+ +N+I D P LA L + L L +
Sbjct: 335 LFFANNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 390
Query: 556 GNTDARVIFP 565
N A V P
Sbjct: 391 VNYKANVSIP 400
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 90/322 (27%), Positives = 135/322 (41%), Gaps = 50/322 (15%)
Query: 201 FVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIH 260
NLT L+ L L NQ+T P LK L NL L LS N+++ T L L
Sbjct: 107 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSF-- 162
Query: 261 LRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTK 320
N+ T P + L L + +SSN +S ++ + A+L NL+ L + N++S T
Sbjct: 163 --GNQVTDLKP--LANLTTLERLDISSNKVS---DISVLAKLTNLESLIATNNQISDITP 215
Query: 321 LDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIP------------ 368
L L +L L+ + + L S L L L+ N+I P
Sbjct: 216 L---GILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 271
Query: 369 --NWFWDI----GKDTLYNLNLSDNFLTDVEQVP-LKNLRFLDLR----SNLLQGSVMVL 417
N +I G L NL L++N L D+ + LKNL +L L S++ S +
Sbjct: 272 GANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTK 331
Query: 418 PPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLI------W 471
RL F +NNK++ S I ++ +N +S P + IT + W
Sbjct: 332 LQRLFF---ANNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAW 386
Query: 472 LDLHLN-SFNGSIPQISANGSG 492
+ +N N SIP N +G
Sbjct: 387 TNAPVNYKANVSIPNTVKNVTG 408
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 634 VIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQ 693
V ++R + + V LN L +NFS+N LT P L+NLT L + +++N++
Sbjct: 47 VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI 104
Query: 694 IPTQLTSLNFLSKLNLSHNQLEGPIP 719
P L +L L+ L L +NQ+ P
Sbjct: 105 TP--LANLTNLTGLTLFNNQITDIDP 128
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 564 FPKLRILDLSRNEFTGVLPTRY--FQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKG 621
FP+L++LDLSR E + Y +L ++ N +Q + G + K
Sbjct: 52 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP----IQSL-ALGAFSGLSSLQKL 106
Query: 622 IDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTG-RIPSSLRNLTVL 680
+ VE N+ S+ P +G L LK LN +HN + ++P NLT L
Sbjct: 107 VAVETNLASL------------ENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 152
Query: 681 ESLDLSSNRLVGQIPTQLTSLN 702
E LDLSSN++ T L L+
Sbjct: 153 EHLDLSSNKIQSIYCTDLRVLH 174
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 57/110 (51%), Gaps = 10/110 (9%)
Query: 210 LDLSWNQLTGRLPSCLKGLRNLVTLRL---SGNSLNGTIPSWLFTVLPYLEVIHLRDNRF 266
LDL N+L+ LPS K L LRL + N L T+P+ +F L LE + + DN+
Sbjct: 42 LDLQSNKLSS-LPS--KAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL 97
Query: 267 TGSIPSTIF-ELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRL 315
++P +F +LVNL +RL N L + +F L L YL L N L
Sbjct: 98 Q-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNEL 145
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 79/167 (47%), Gaps = 12/167 (7%)
Query: 200 SFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVI 259
+F LT+L L L+ N+L K L+NL TL ++ N L +P +F L L +
Sbjct: 56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAEL 114
Query: 260 HLRDNRFTGSIPSTIFE-LVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVN 318
L N+ S+P +F+ L LT + L N L + +F +L +L+ L L N+L
Sbjct: 115 RLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQL--- 169
Query: 319 TKLDANSTFPKLLK---LGLSACNISEFPD-FLRSQDRLEWLQLSEN 361
K F KL + L L + P+ S ++L+ LQL EN
Sbjct: 170 -KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 198 PDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLE 257
P F +LT+L++L L +N+L L +L LRL N L +P F L L+
Sbjct: 126 PRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELK 184
Query: 258 VIHLRDNRFTGSIPSTIFE-LVNLTSIRLSSN 288
+ L +N+ +P F+ L L ++L N
Sbjct: 185 TLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 70/178 (39%), Gaps = 20/178 (11%)
Query: 544 LILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQV 603
L L+SNK L R+ KLR+L L+ N+ LP F+ LK N T+ V
Sbjct: 42 LDLQSNKLSSLPSKAFHRLT--KLRLLYLNDNKLQ-TLPAGIFKELK------NLETLWV 92
Query: 604 QYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSH 663
F L +N+ + L N+ + P V L L L+ +
Sbjct: 93 TDNKLQALPIGVFDQL------VNLAELRL----DRNQLKSLPPRVFDSLTKLTYLSLGY 142
Query: 664 NHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQG 721
N L LT L+ L L +N+L L L L L +NQL+ +P+G
Sbjct: 143 NELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPEG 199
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 6/113 (5%)
Query: 204 LTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRD 263
L + +L L N+L S LK L NL L L+GN L ++P+ +F L L+ + L +
Sbjct: 62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVE 118
Query: 264 NRFTGSIPSTIFE-LVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRL 315
N+ S+P +F+ L NLT + L+ N L + +F +L NL L LS N+L
Sbjct: 119 NQLQ-SLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQL 169
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 201 FVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIH 260
F LT L+ LDLS+NQL L L LRL N L ++P +F L L+ I
Sbjct: 153 FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIW 211
Query: 261 LRDNRFTGSIP 271
L DN + + P
Sbjct: 212 LHDNPWDCTCP 222
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 649 VVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLN 708
V KL L LN +HN L LT L LDLS N+L L L L
Sbjct: 128 VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187
Query: 709 LSHNQLEGPIPQGPQFNTFQSDSYI 733
L NQL+ +P G F+ S YI
Sbjct: 188 LYQNQLKS-VPDGV-FDRLTSLQYI 210
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Query: 45 SLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIE 104
SL F +L +LT+LNL+++ +L+ + LDLS N +++S + +G+ +
Sbjct: 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN---QLQS-LPEGVFD 178
Query: 105 NLTKLKELVLSEVDMSTI 122
LT+LK+L L + + ++
Sbjct: 179 KLTQLKDLRLYQNQLKSV 196
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 114/276 (41%), Gaps = 57/276 (20%)
Query: 45 SLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIE 104
S + SG L +L L LS + F S + L + N + R+E + G +E
Sbjct: 291 SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK-RLE--LGTGCLE 347
Query: 105 NLTKLKELVLSEVDMSTIVLDXXXXXXXXXXXXXXXXGCNLIGPIPASLANLPQLTSLSL 164
NL L+EL LS D+ T CNL L NL L SL+L
Sbjct: 348 NLENLRELDLSHDDIET------------------SDCCNL------QLRNLSHLQSLNL 383
Query: 165 SYNHFSGHIPSFLSHXXXXXXXXXXXXXXVGGIPDSFVNLTQLSFLDLSWNQLTGR-LPS 223
SYN P L ++F QL LDL++ +L + S
Sbjct: 384 SYNE-----PLSLK-------------------TEAFKECPQLELLDLAFTRLKVKDAQS 419
Query: 224 CLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRF-TGSIPST--IFELVNL 280
+ L L L LS +SL LF LP L+ ++L+ N F G+I T + L L
Sbjct: 420 PFQNLHLLKVLNLS-HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL 478
Query: 281 TSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLS 316
+ LS +LS I+ F LK + ++ LS NRL+
Sbjct: 479 EILVLSFCDLSS-IDQHAFTSLKMMNHVDLSHNRLT 513
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 78/193 (40%), Gaps = 18/193 (9%)
Query: 511 LANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRIL 570
L N S LQ LN++ N + P+L +L L + + DA+ F L +L
Sbjct: 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA----FTRLKVKDAQSPFQNLHLL 427
Query: 571 ----------DLSRNEFTGVLPTRYFQNLKA--MMRGSNTSTVQVQYMHRFGRYYSAFFT 618
D+S + LP NL+ +G+ T +Q + R +F
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487
Query: 619 LKGIDVE-MNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNL 677
L ID L + +D S NR E + L + LN + NH++ +PS L L
Sbjct: 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPIL 546
Query: 678 TVLESLDLSSNRL 690
+ +++L N L
Sbjct: 547 SQQRTINLRQNPL 559
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 117/286 (40%), Gaps = 26/286 (9%)
Query: 447 FIDLSNNSLSGPIPECLVD-SITLIWLDLHLNSFNGSIPQISANG----SGLVNLILNDN 501
F D+ + +S + E L + S+ I L H FN IS+N SGL L L
Sbjct: 235 FEDMDDEDISPAVFEGLCEMSVESINLQKHY-FFN-----ISSNTFHCFSGLQELDLTAT 288
Query: 502 QFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDAR 561
LP L S L+ L ++ N+ ++ + P L L ++ N +G T
Sbjct: 289 HL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG-TGCL 346
Query: 562 VIFPKLRILDLSRNEFTGV----LPTRYFQNLKAMMRGSNT----STVQVQYMHRFGRYY 613
LR LDLS ++ L R +L+++ N T + +
Sbjct: 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406
Query: 614 SAFFTLKGIDVE--MNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHL-TGRI 670
AF LK D + L + V++ S + + ++ L L+ LN NH G I
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI 466
Query: 671 --PSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQL 714
+SL+ L LE L LS L TSL ++ ++LSHN+L
Sbjct: 467 QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 564 FPKLRILDLSRNEFTGVLPTRY--FQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKG 621
FP+L++LDLSR E + Y +L ++ N +Q + G + K
Sbjct: 75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP----IQSL-ALGAFSGLSSLQKL 129
Query: 622 IDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTG-RIPSSLRNLTVL 680
+ VE N+ S+ P +G L LK LN +HN + ++P NLT L
Sbjct: 130 VAVETNLASL------------ENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 175
Query: 681 ESLDLSSNRLVGQIPTQLTSLN 702
E LDLSSN++ T L L+
Sbjct: 176 EHLDLSSNKIQSIYCTDLRVLH 197
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 4/157 (2%)
Query: 201 FVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIH 260
F++L L +LD+S GL +L L+++GNS +FT L L +
Sbjct: 441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 500
Query: 261 LRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTK 320
L + P+ L +L + +S NN ++ + L +LQ L S N + + K
Sbjct: 501 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKK 559
Query: 321 LDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQ 357
+ L L L+ ++F Q L+W++
Sbjct: 560 QELQHFPSSLAFLNLTQ---NDFACTCEHQSFLQWIK 593
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 197 IPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYL 256
+PD F L L+FLDLS QL P+ L +L L +S N+ ++ ++ + L L
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSL 544
Query: 257 EVIHLRDNRFTGSIPSTIFEL-VNLTSIRLSSNNLSGHIELCMFAR-LKNLQYLYLSQNR 314
+V+ N S + +L + L+ N+ + E F + +K+ + L + R
Sbjct: 545 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVER 604
Query: 315 LSVNTKLD 322
+ T D
Sbjct: 605 MECATPSD 612
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 104/271 (38%), Gaps = 69/271 (25%)
Query: 445 IEFIDLSNNSLS--GPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQ 502
+EF+DLS N LS G + +I+L +LDL SFNG I +S+N GL L D Q
Sbjct: 373 LEFLDLSRNGLSFKGCCSQSDFGTISLKYLDL---SFNGVIT-MSSNFLGLEQLEHLDFQ 428
Query: 503 FEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARV 562
L Q+ E V + N Y I +T RV
Sbjct: 429 HSN-----------------------------LKQMSEFSVFLSLRNLIYLDISHTHTRV 459
Query: 563 IFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGI 622
F + F G+ S+++V M G + F L I
Sbjct: 460 AFNGI---------FNGL------------------SSLEVLKMA--GNSFQENF-LPDI 489
Query: 623 DVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLES 682
E+ L+ +D S + E P L+ L++LN SHN+ + L L+
Sbjct: 490 FTELRNLTF---LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 546
Query: 683 LDLSSNRLVGQIPTQLTSL-NFLSKLNLSHN 712
LD S N ++ +L + L+ LNL+ N
Sbjct: 547 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 138/574 (24%), Positives = 217/574 (37%), Gaps = 155/574 (27%)
Query: 210 LDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGS 269
++L++ ++ LP K L LS N L + S+ F P L+V+ L
Sbjct: 39 MELNFYKIPDNLPFSTKNLD------LSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTI 91
Query: 270 IPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFP- 328
L +L+++ L+ N + + L F+ L +LQ L ++V T L + FP
Sbjct: 92 EDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKL------VAVETNLASLENFPI 144
Query: 329 ----KLLKLGLSACNISEF--PDFLRSQDRLEWLQLSENKIYG------RI--------- 367
L +L ++ I F P++ + LE L LS NKI R+
Sbjct: 145 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 204
Query: 368 -------------PNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSV 414
P F +I L+ L L +NF + L++ +QG
Sbjct: 205 SLDLSLNPMNFIQPGAFKEI---RLHKLTLRNNFDS------------LNVMKTCIQGLA 249
Query: 415 MVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDL 474
+ RL+ GE F +E D S +L G + ++ L +LD
Sbjct: 250 GLEVHRLVL---------GE----FRNEGNLEKFDKS--ALEG-LCNLTIEEFRLAYLDY 293
Query: 475 HLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPH- 533
+L+ G+++L L N S +++V R+ D F +
Sbjct: 294 YLD--------------GIIDLF-----------NCLTNVSSFSLVSVTIERVKD-FSYN 327
Query: 534 --W---------LAQLPELLVLILRSNKFYGLIG-NTDARVIFPKLRILDLSRNEFT--- 578
W Q P L + L+ F G N + V P L LDLSRN +
Sbjct: 328 FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG 387
Query: 579 -------GVLPTRYFQ---NLKAMMRGSNTSTVQVQYMH------RFGRYYSAFFTLKGI 622
G + +Y N M + Q++++ + +S F +L+ +
Sbjct: 388 CCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447
Query: 623 DVEMNILSIFLVIDFSSNR--FEGQIPEVVGKLNLLKML--NFSHNHLTGRIPSSLRNLT 678
I+L I + R F G I + L +LKM +F N L I + LRNLT
Sbjct: 448 --------IYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLT 497
Query: 679 VLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHN 712
LDLS +L PT SL+ L LN+SHN
Sbjct: 498 F---LDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 564 FPKLRILDLSRNEFTGVLPTRY--FQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKG 621
FP+L++LDLSR E + Y +L ++ N +Q + G + K
Sbjct: 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP----IQSL-ALGAFSGLSSLQKL 105
Query: 622 IDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTG-RIPSSLRNLTVL 680
+ VE N+ S+ P +G L LK LN +HN + ++P NLT L
Sbjct: 106 VAVETNLASL------------ENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151
Query: 681 ESLDLSSNRLVGQIPTQLTSLN 702
E LDLSSN++ T L L+
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLH 173
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 197 IPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYL 256
+PD F L L+FLDLS QL P+ L +L L ++ N L ++P +F L L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSL 520
Query: 257 EVIHLRDNRFTGSIP 271
+ I L N + S P
Sbjct: 521 QKIWLHTNPWDCSCP 535
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 90/208 (43%), Gaps = 41/208 (19%)
Query: 537 QLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRN--EFTGVLPTRYF--QNLKAM 592
+L L L SNK GN + V P L LDLSRN F G F +LK +
Sbjct: 323 KLKSLKRLTFTSNK----GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378
Query: 593 ---------MRGSNTSTVQVQYMH------RFGRYYSAFFTLKGIDVEMNILSIFLVIDF 637
M + Q++++ + +S F +L+ + I+L I
Sbjct: 379 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL--------IYLDISH 430
Query: 638 SSNR--FEGQIPEVVGKLNLLKML--NFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQ 693
+ R F G I + L +LKM +F N L I + LRNLT L DLS +L
Sbjct: 431 THTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFL---DLSQCQLEQL 485
Query: 694 IPTQLTSLNFLSKLNLSHNQLEGPIPQG 721
PT SL+ L LN++ NQL+ +P G
Sbjct: 486 SPTAFNSLSSLQVLNMASNQLKS-VPDG 512
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
Query: 201 FVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIH 260
F++L L +LD+S GL +L L+++GNS +FT L L +
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476
Query: 261 LRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQN 313
L + P+ L +L + ++SN L + +F RL +LQ ++L N
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQKIWLHTN 528
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 564 FPKLRILDLSRNEFTGVLPTRY--FQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKG 621
FP+L++LDLSR E + Y +L ++ N +Q + G + K
Sbjct: 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP----IQSL-ALGAFSGLSSLQKL 105
Query: 622 IDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTG-RIPSSLRNLTVL 680
+ VE N+ S+ P +G L LK LN +HN + ++P NLT L
Sbjct: 106 VAVETNLASL------------ENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151
Query: 681 ESLDLSSNRLVGQIPTQLTSLN 702
E LDLSSN++ T L L+
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLH 173
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 85/199 (42%), Gaps = 40/199 (20%)
Query: 537 QLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRN--EFTGVLPTRYF--QNLKAM 592
+L L L SNK GN + V P L LDLSRN F G F +LK +
Sbjct: 323 KLKSLKRLTFTSNK----GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378
Query: 593 ---------MRGSNTSTVQVQYMH------RFGRYYSAFFTLKGIDVEMNILSIFLVIDF 637
M + Q++++ + +S F +L+ + I+L I
Sbjct: 379 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL--------IYLDISH 430
Query: 638 SSNR--FEGQIPEVVGKLNLLKML--NFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQ 693
+ R F G I + L +LKM +F N L I + LRNLT L DLS +L
Sbjct: 431 THTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFL---DLSQCQLEQL 485
Query: 694 IPTQLTSLNFLSKLNLSHN 712
PT SL+ L LN+SHN
Sbjct: 486 SPTAFNSLSSLQVLNMSHN 504
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 4/157 (2%)
Query: 201 FVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIH 260
F++L L +LD+S GL +L L+++GNS +FT L L +
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476
Query: 261 LRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTK 320
L + P+ L +L + +S NN ++ + L +LQ L S N + + K
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKK 535
Query: 321 LDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQ 357
+ L L L+ ++F Q L+W++
Sbjct: 536 QELQHFPSSLAFLNLTQ---NDFACTCEHQSFLQWIK 569
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 197 IPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYL 256
+PD F L L+FLDLS QL P+ L +L L +S N+ ++ ++ + L L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSL 520
Query: 257 EVIHLRDNRFTGSIPSTIFEL-VNLTSIRLSSNNLSGHIELCMFAR-LKNLQYLYLSQNR 314
+V+ N S + +L + L+ N+ + E F + +K+ + L + R
Sbjct: 521 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVER 580
Query: 315 LSVNTKLD 322
+ T D
Sbjct: 581 MECATPSD 588
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 103/271 (38%), Gaps = 69/271 (25%)
Query: 445 IEFIDLSNNSLS--GPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQ 502
+EF+DLS N LS G + + +L +LDL SFNG I +S+N GL L D Q
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL---SFNGVIT-MSSNFLGLEQLEHLDFQ 404
Query: 503 FEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARV 562
L Q+ E V + N Y I +T RV
Sbjct: 405 HSN-----------------------------LKQMSEFSVFLSLRNLIYLDISHTHTRV 435
Query: 563 IFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGI 622
F + F G+ S+++V M G + F L I
Sbjct: 436 AFNGI---------FNGL------------------SSLEVLKMA--GNSFQENF-LPDI 465
Query: 623 DVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLES 682
E+ L+ +D S + E P L+ L++LN SHN+ + L L+
Sbjct: 466 FTELRNLTF---LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 522
Query: 683 LDLSSNRLVGQIPTQLTSL-NFLSKLNLSHN 712
LD S N ++ +L + L+ LNL+ N
Sbjct: 523 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Query: 201 FVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIH 260
F + T L L L+ N++ + GL +L+ L LS N L G+I S +F L LEV+
Sbjct: 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLD 353
Query: 261 LRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQN 313
L N + L NL + L +N L + +F RL +LQ ++L N
Sbjct: 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 405
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 75/179 (41%), Gaps = 32/179 (17%)
Query: 317 VNTKLDANSTFPKLLKLGLSACNISEFPDF--LRSQ----DRLEWLQLSENKIYGRIPNW 370
N K N TF L G+ C++S+ F L+S LE L L++N+I N
Sbjct: 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA 318
Query: 371 FWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNK 430
FW G L LNLS NFL ++ +NL +L +S N
Sbjct: 319 FW--GLTHLLKLNLSQNFLGSIDSRMFENL------------------DKLEVLDLSYNH 358
Query: 431 LTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSIT---LIWLDLHLNSFNGSIPQI 486
+ SF ++ + L N L +P+ + D +T IW LH N ++ S P+I
Sbjct: 359 IRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIW--LHTNPWDCSCPRI 414
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 199 DSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSW-LFTVLPYLE 257
++F L+ L L L +NQ GL NL L L+ +L+G + S F L LE
Sbjct: 73 NTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE 132
Query: 258 VIHLRDNRFTGSIPSTIF 275
++ LRDN P++ F
Sbjct: 133 MLVLRDNNIKKIQPASFF 150
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 201 FVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIH 260
F NL +L LDLS+N + GL NL L L N L ++P +F L L+ I
Sbjct: 343 FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIW 401
Query: 261 LRDNRFTGSIP 271
L N + S P
Sbjct: 402 LHTNPWDCSCP 412
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 564 FPKLRILDLSRNEFTGVLPTRY--FQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKG 621
FP+L++LDLSR E + Y +L ++ N +Q + G + K
Sbjct: 53 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP----IQSL-ALGAFSGLSSLQKL 107
Query: 622 IDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTG-RIPSSLRNLTVL 680
+ +E N+ S+ P +G L LK LN +HN + ++P NLT L
Sbjct: 108 VALETNLASL------------ENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 153
Query: 681 ESLDLSSNRLVGQIPTQLTSLN 702
E LDLSSN++ T L L+
Sbjct: 154 EHLDLSSNKIQSIYCTDLRVLH 175
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 10/117 (8%)
Query: 200 SFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVI 259
+ +LT L+ LDL+ NQ++ P L GL L L+L N ++ P T L LE
Sbjct: 238 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLE-- 293
Query: 260 HLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLS 316
L +N+ P I L NLT + L NN+S ++ + L LQ L+ N++S
Sbjct: 294 -LNENQLEDISP--ISNLKNLTYLTLYFNNIS---DISPVSSLTKLQRLFFYNNKVS 344
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 90/322 (27%), Positives = 135/322 (41%), Gaps = 50/322 (15%)
Query: 201 FVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIH 260
NLT L+ L L NQ+T P LK L NL L LS N+++ T L L
Sbjct: 108 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSF-- 163
Query: 261 LRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTK 320
N+ T P + L L + +SSN +S ++ + A+L NL+ L + N++S T
Sbjct: 164 --GNQVTDLKP--LANLTTLERLDISSNKVS---DISVLAKLTNLESLIATNNQISDITP 216
Query: 321 LDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIP------------ 368
L L +L L+ + + L S L L L+ N+I P
Sbjct: 217 L---GILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 272
Query: 369 --NWFWDI----GKDTLYNLNLSDNFLTDVEQVP-LKNLRFLDLR----SNLLQGSVMVL 417
N +I G L NL L++N L D+ + LKNL +L L S++ S +
Sbjct: 273 GANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTK 332
Query: 418 PPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLI------W 471
RL F+ NNK++ S I ++ +N +S P + IT + W
Sbjct: 333 LQRLFFY---NNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAW 387
Query: 472 LDLHLN-SFNGSIPQISANGSG 492
+ +N N SIP N +G
Sbjct: 388 TNAPVNYKANVSIPNTVKNVTG 409
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 103/370 (27%), Positives = 163/370 (44%), Gaps = 44/370 (11%)
Query: 203 NLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLR 262
NLTQ++F S NQLT P LK L LV + ++ N + P L L + L
Sbjct: 69 NLTQINF---SNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLF 120
Query: 263 DNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLD 322
+N+ T P + L NL + LSSN +S ++ + L +LQ L N++ T L
Sbjct: 121 NNQITDIDP--LKNLTNLNRLELSSNTIS---DISALSGLTSLQQLSFG-NQV---TDLK 171
Query: 323 ANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDT-LYN 381
+ L +L +S+ +S+ L LE L + N+I P +G T L
Sbjct: 172 PLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITP-----LGILTNLDE 225
Query: 382 LNLSDNFLTDVEQVP-LKNLRFLDLRSNLLQGSVMVLPP-----RLIFFSISNNKLTGEI 435
L+L+ N L D+ + L NL LDL +N + L P +L + N+++
Sbjct: 226 LSLNGNQLKDIGTLASLTNLTDLDLANNQISN----LAPLSGLTKLTELKLGANQISNIS 281
Query: 436 PCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVN 495
P + TA + ++L+ N L P + ++T +L L+ N+ + P S + L
Sbjct: 282 PLAGLTA--LTNLELNENQLEDISPISNLKNLT--YLTLYFNNISDISPVSSL--TKLQR 335
Query: 496 LILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLI 555
L +N+ SLAN + + L+ +N+I D P LA L + L L +
Sbjct: 336 LFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 391
Query: 556 GNTDARVIFP 565
N A V P
Sbjct: 392 VNYKANVSIP 401
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 634 VIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQ 693
V ++R + + V LN L +NFS+N LT P L+NLT L + +++N++
Sbjct: 48 VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI 105
Query: 694 IPTQLTSLNFLSKLNLSHNQLEGPIP 719
P L +L L+ L L +NQ+ P
Sbjct: 106 TP--LANLTNLTGLTLFNNQITDIDP 129
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 10/117 (8%)
Query: 200 SFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVI 259
+ +LT L+ LDL+ NQ++ P L GL L L+L N ++ P T L LE
Sbjct: 233 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLE-- 288
Query: 260 HLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLS 316
L +N+ P I L NLT + L NN+S ++ + L LQ L+ N++S
Sbjct: 289 -LNENQLEDISP--ISNLKNLTYLTLYFNNIS---DISPVSSLTKLQRLFFYNNKVS 339
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 90/322 (27%), Positives = 135/322 (41%), Gaps = 50/322 (15%)
Query: 201 FVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIH 260
NLT L+ L L NQ+T P LK L NL L LS N+++ T L L
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNF-- 158
Query: 261 LRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTK 320
N+ T P + L L + +SSN +S ++ + A+L NL+ L + N++S T
Sbjct: 159 --GNQVTDLKP--LANLTTLERLDISSNKVS---DISVLAKLTNLESLIATNNQISDITP 211
Query: 321 LDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIP------------ 368
L L +L L+ + + L S L L L+ N+I P
Sbjct: 212 L---GILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 267
Query: 369 --NWFWDI----GKDTLYNLNLSDNFLTDVEQVP-LKNLRFLDLR----SNLLQGSVMVL 417
N +I G L NL L++N L D+ + LKNL +L L S++ S +
Sbjct: 268 GANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTK 327
Query: 418 PPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLI------W 471
RL F+ NNK++ S I ++ +N +S P + IT + W
Sbjct: 328 LQRLFFY---NNKVSD--VSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAW 382
Query: 472 LDLHLN-SFNGSIPQISANGSG 492
+ +N N SIP N +G
Sbjct: 383 TNAPVNYKANVSIPNTVKNVTG 404
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 103/370 (27%), Positives = 163/370 (44%), Gaps = 44/370 (11%)
Query: 203 NLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLR 262
NLTQ++F S NQLT P LK L LV + ++ N + P L L + L
Sbjct: 64 NLTQINF---SNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLF 115
Query: 263 DNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLD 322
+N+ T P + L NL + LSSN +S ++ + L +LQ L N++ T L
Sbjct: 116 NNQITDIDP--LKNLTNLNRLELSSNTIS---DISALSGLTSLQQLNFG-NQV---TDLK 166
Query: 323 ANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDT-LYN 381
+ L +L +S+ +S+ L LE L + N+I P +G T L
Sbjct: 167 PLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP-----LGILTNLDE 220
Query: 382 LNLSDNFLTDVEQVP-LKNLRFLDLRSNLLQGSVMVLPP-----RLIFFSISNNKLTGEI 435
L+L+ N L D+ + L NL LDL +N + L P +L + N+++
Sbjct: 221 LSLNGNQLKDIGTLASLTNLTDLDLANNQISN----LAPLSGLTKLTELKLGANQISNIS 276
Query: 436 PCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVN 495
P + TA + ++L+ N L P + ++T +L L+ N+ + P S + L
Sbjct: 277 PLAGLTA--LTNLELNENQLEDISPISNLKNLT--YLTLYFNNISDISPVSSL--TKLQR 330
Query: 496 LILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLI 555
L +N+ SLAN + + L+ +N+I D P LA L + L L +
Sbjct: 331 LFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 386
Query: 556 GNTDARVIFP 565
N A V P
Sbjct: 387 VNYKANVSIP 396
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 634 VIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQ 693
V ++R + + V LN L +NFS+N LT P L+NLT L + +++N++
Sbjct: 43 VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI 100
Query: 694 IPTQLTSLNFLSKLNLSHNQLEGPIP 719
P L +L L+ L L +NQ+ P
Sbjct: 101 TP--LANLTNLTGLTLFNNQITDIDP 124
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 656 LKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLE 715
L+ LNF N +T P L NLT LE LD+SSN+ V I L L L L ++NQ+
Sbjct: 153 LQQLNFG-NQVTDLKP--LANLTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQIS 207
Query: 716 GPIPQG 721
P G
Sbjct: 208 DITPLG 213
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 106/452 (23%), Positives = 185/452 (40%), Gaps = 74/452 (16%)
Query: 199 DSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEV 258
DSF +L L LDLS+N L+ S K L +L L L GN + LF+ L L++
Sbjct: 68 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 127
Query: 259 IHLRD-NRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQY--LYLSQNRL 315
+ + + + FT L L + + +++L + E ++N+ + L++ Q+ L
Sbjct: 128 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY-EPKSLKSIQNVSHLILHMKQHIL 186
Query: 316 SVNTKLDANSTFP--KLLKLGLSACNISE--------------FPDFLRSQDRLEWLQLS 359
+ +D S+ +L L + SE F + + + L +
Sbjct: 187 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL 246
Query: 360 ENKIYGRIPNWFWDIGKDTLYNLNLSDNFLT----DVEQVPLKNLR------FLDLRSNL 409
N+I G + F D + + N SDN VE + ++ L F DL
Sbjct: 247 LNQISGLLELEFDDCTLNGVGNFRASDNDRVIDPGKVETLTIRRLHIPRFYLFYDL---- 302
Query: 410 LQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTA-APIEFIDLSNNSLSGPIPECLVDSI- 467
++ L R+ ++ N+K+ +PC +E++DLS N + + E L +S
Sbjct: 303 --STLYSLTERVKRITVENSKVFL-VPCLLSQHLKSLEYLDLSENLM---VEEYLKNSAC 356
Query: 468 --------TLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQV 519
TLI HL S + + L N+ ++ N F +P++ +++
Sbjct: 357 EDAWPSLQTLILRQNHLASLEKT-GETLLTLKNLTNIDISKNSFHS-MPETCQWPEKMKY 414
Query: 520 LNVANNRIDDT---FPHWLAQL--------------PELLVLILRSNKFYGLIGNTDARV 562
LN+++ RI P L L P+L L + NK L DA +
Sbjct: 415 LNLSSTRIHSVTGCIPKTLEILDVSNNNLNLFSLNLPQLKELYISRNKLMTL---PDASL 471
Query: 563 IFPKLRILDLSRNEFTGVLPTRYFQNLKAMMR 594
+ P L +L +SRN+ V P F L ++ +
Sbjct: 472 L-PMLLVLKISRNQLKSV-PDGIFDRLTSLQK 501
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 237 SGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIEL 296
S SLN +IPS L + L+ L +NR T S + VNL ++ L+SN ++ IE
Sbjct: 13 SSGSLN-SIPSGLTEAVKSLD---LSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEE 67
Query: 297 CMFARLKNLQYLYLSQNRLS 316
F+ L +L++L LS N LS
Sbjct: 68 DSFSSLGSLEHLDLSYNYLS 87
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 114/267 (42%), Gaps = 38/267 (14%)
Query: 399 NLRFLDLRSN-LLQGSVMVLPP--RLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNS- 454
N++ LDL N L Q S L P +L ++S+N L + + + + +DL+NN
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLE--SLSTLRTLDLNNNYV 92
Query: 455 ---LSGPIPECLVDSITLIWLDLHLNSFNGSIPQIS-ANGSGLVNLILNDNQFEGPLPQS 510
L GP E L ++ N +I ++S + G G N+ L +N+
Sbjct: 93 QELLVGPSIETL-------------HAANNNISRVSCSRGQGKKNIYLANNKITMLRDLD 139
Query: 511 LANCSRLQVLNVANNRIDDT-FPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRI 569
SR+Q L++ N ID F A L L L+ N Y + G +V+F KL+
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG----QVVFAKLKT 195
Query: 570 LDLSRNEFTGVLPTRYFQNLKAMMRGS--NTSTVQVQYMHRFGRYYSAFFTLKGIDVEMN 627
LDLS N+ + P FQ+ + S N V ++ RF + F L+G
Sbjct: 196 LDLSSNKLAFMGPE--FQSAAGVTWISLRNNKLVLIEKALRFSQNLE-HFDLRGNGFHCG 252
Query: 628 ILSIFLVIDFSSN-RFEGQIPEVVGKL 653
L F FS N R + + V KL
Sbjct: 253 TLRDF----FSKNQRVQTVAKQTVKKL 275
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 350 QDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVE-QVPLKNLRFLDLRSN 408
+ R+++L L N+I + DTL +LNL NF+ DV+ QV L+ LDL SN
Sbjct: 143 RSRVQYLDLKLNEI-DTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN 201
Query: 409 LLQ--GSVMVLPPRLIFFSISNNKL 431
L G + + S+ NNKL
Sbjct: 202 KLAFMGPEFQSAAGVTWISLRNNKL 226
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Query: 198 PDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLE 257
P +F +L +DLS NQ++ P +GLR+L +L L GN + +P LF L L+
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQ 107
Query: 258 VIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQN 313
++ L N+ +L NL + L N L I F+ L+ +Q ++L+QN
Sbjct: 108 LLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTMHLAQN 162
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 118/471 (25%), Positives = 196/471 (41%), Gaps = 85/471 (18%)
Query: 328 PKLLKLGLSACNISEF--PDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLS 385
P+ L LS +ISE PD + L L+LS N+I R ++ + L L++S
Sbjct: 52 PRTKALSLSQNSISELRMPD-ISFLSELRVLRLSHNRI--RSLDFHVFLFNQDLEYLDVS 108
Query: 386 DNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLP--------PRLIFFSISNNKLT--GEI 435
N L ++ P+ +LR LDL N VLP +L F +S K +
Sbjct: 109 HNRLQNISCCPMASLRHLDLSFNDFD----VLPVCKEFGNLTKLTFLGLSAAKFRQLDLL 164
Query: 436 PCSFCTAAPIEFIDLSNNSLSGPIPECL-VDSITLIWLDLHLNSFNGSIPQISANGSG-- 492
P + + I +DL + + G E L + + T++ L H NS +S N G
Sbjct: 165 PVAHLHLSCI-LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL 223
Query: 493 -LVNLILNDNQFE-----------GPL--------PQSLANCSR----------LQVLNV 522
L N+ LND + GP ++ CS ++ LN+
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283
Query: 523 AN----NRID-DTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKL--RILDLSRN 575
N RID + F + L L++ +++ F L +F ++ ++L +S
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDT 341
Query: 576 EFTGVL----PT-----RYFQNL--KAMMRGSNT-STVQVQYMHRFGRYYSAFFTLKGID 623
F ++ P+ + QN+ ++ +G +T +Q + R G FF + +
Sbjct: 342 PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG--LKNFFKVALMT 399
Query: 624 VEMNILSIFLVIDFSSNRFEGQIPE-VVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLES 682
M+ L +D S N + + +LN S N LTG + L ++
Sbjct: 400 KNMSSLE---TLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKV 454
Query: 683 LDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQSDSYI 733
LDL +NR++ IP +T L L +LN++ NQL+ +P G F+ S YI
Sbjct: 455 LDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS-VPDG-VFDRLTSLQYI 502
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Query: 198 PDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLE 257
P +F +L +DLS NQ++ P +GLR+L +L L GN + +P LF L L+
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQ 107
Query: 258 VIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQN 313
++ L N+ +L NL + L N L I F+ L+ +Q ++L+QN
Sbjct: 108 LLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTMHLAQN 162
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 9/120 (7%)
Query: 257 EVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLS 316
++++L DN+ T P L+NL + L SN L G + + +F L L L L N+L+
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 317 VNTKLDANSTFPKLLKLG--LSACN-ISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWD 373
V ++ F +L+ L CN ++E P + L L L +N++ IP+ +D
Sbjct: 102 VL----PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS-IPHGAFD 156
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 28/121 (23%)
Query: 194 VGGIP-DSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTV 252
+G +P F +LTQL+ LDL NQLT +PS +F
Sbjct: 76 LGALPVGVFDSLTQLTVLDLGTNQLT-------------------------VLPSAVFDR 110
Query: 253 LPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQ 312
L +L+ + + N+ T +P I L +LT + L N L I F RL +L + YL
Sbjct: 111 LVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLFG 168
Query: 313 N 313
N
Sbjct: 169 N 169
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 114/267 (42%), Gaps = 38/267 (14%)
Query: 399 NLRFLDLRSN-LLQGSVMVLPP--RLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNS- 454
N++ LDL N L Q S L P +L ++S+N L + + + + +DL+NN
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLE--SLSTLRTLDLNNNYV 92
Query: 455 ---LSGPIPECLVDSITLIWLDLHLNSFNGSIPQIS-ANGSGLVNLILNDNQFEGPLPQS 510
L GP E L ++ N +I ++S + G G N+ L +N+
Sbjct: 93 QELLVGPSIETL-------------HAANNNISRVSCSRGQGKKNIYLANNKITMLRDLD 139
Query: 511 LANCSRLQVLNVANNRIDDT-FPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRI 569
SR+Q L++ N ID F A L L L+ N Y + G +V+F KL+
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG----QVVFAKLKT 195
Query: 570 LDLSRNEFTGVLPTRYFQNLKAM--MRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMN 627
LDLS N+ + P FQ+ + + N V ++ RF + F L+G
Sbjct: 196 LDLSSNKLAFMGPE--FQSAAGVTWISLRNNKLVLIEKALRFSQNLE-HFDLRGNGFHCG 252
Query: 628 ILSIFLVIDFSSN-RFEGQIPEVVGKL 653
L F FS N R + + V KL
Sbjct: 253 TLRDF----FSKNQRVQTVAKQTVKKL 275
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 377 DTLYNLNLSDNFLTDVE-QVPLKNLRFLDLRSNLLQ--GSVMVLPPRLIFFSISNNKLTG 433
DTL +LNL NF+ DV+ QV L+ LDL SN L G + + S+ NNKL
Sbjct: 169 DTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL 228
Query: 434 EIPCSFCTAAPIEFIDLSNN 453
I + + +E DL N
Sbjct: 229 -IEKALRFSQNLEHFDLRGN 247
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 10/121 (8%)
Query: 196 GIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPY 255
GIP Q ++LDL N L L +L L L GN L ++P+ +F L
Sbjct: 25 GIP------AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTS 77
Query: 256 LEVIHLRDNRFTGSIPSTIFE-LVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNR 314
L ++L N+ S+P+ +F+ L L + L++N L + +F +L L+ L L QN+
Sbjct: 78 LTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQ 135
Query: 315 L 315
L
Sbjct: 136 L 136
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 201 FVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIH 260
F LTQL L L+ NQL L L LRL N L ++P +F L L+ I
Sbjct: 96 FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIW 154
Query: 261 LRDNRFTGSIP 271
L DN + + P
Sbjct: 155 LHDNPWDCTCP 165
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 7/121 (5%)
Query: 2 VTGQVIGLDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLN 61
+ Q LDL + L S+P N L L L LG N S L + F +L SLT+LN
Sbjct: 26 IPAQTTYLDLETNSLK-SLP-NGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLN 82
Query: 62 LSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMST 121
LS + +L+++ L L+ N +++S + G+ + LT+LK+L L + + +
Sbjct: 83 LSTNQLQSLPNGVFDKLTQLKELALNTN---QLQS-LPDGVFDKLTQLKDLRLYQNQLKS 138
Query: 122 I 122
+
Sbjct: 139 V 139
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 118/271 (43%), Gaps = 42/271 (15%)
Query: 200 SFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVI 259
+F T++ LDL+ L G LPS ++G+ +L L L+ NS + + P L +
Sbjct: 272 TFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFD-QLCQINAASFPSLRDL 329
Query: 260 HLRDNRFTGSIPSTIFE-LVNLTSIRLSSNNLSGHIELC--MFARLKNLQYLYLSQNRLS 316
+++ N + + E L NL + LS +++ + C L++LQYL LS N
Sbjct: 330 YIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEAS-DCCNLQLKNLRHLQYLNLSYNE-- 386
Query: 317 VNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNW-FWDIG 375
LGL E P +LE L ++ ++ + P+ F ++
Sbjct: 387 ---------------PLGLEDQAFKECP-------QLELLDVAFTHLHVKAPHSPFQNL- 423
Query: 376 KDTLYNLNLSDNFLTDVEQ---VPLKNLRFLDLRSNLLQ-GSV-----MVLPPRLIFFSI 426
L LNLS L Q L++LR L+L+ N Q GS+ + + L +
Sbjct: 424 -HLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILIL 482
Query: 427 SNNKLTGEIPCSFCTAAPIEFIDLSNNSLSG 457
S+ L +F + +DLS+NSL+G
Sbjct: 483 SSCNLLSIDQQAFHGLRNVNHLDLSHNSLTG 513
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 125/310 (40%), Gaps = 52/310 (16%)
Query: 32 LETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKN-- 89
+E++NL + F S L SS F + L+L+ ++ +G +PS I ++ + L L+ N
Sbjct: 255 VESINLQKHRF-SDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSF 312
Query: 90 DEV-RIESPVWKGL------------------IENLTKLKELVLSEVDMSTIVLDXXXXX 130
D++ +I + + L +E L L++L LS D+
Sbjct: 313 DQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEA--------- 363
Query: 131 XXXXXXXXXXXGCNLIGPIPASLANLPQLTSLSLSYNHFSG-HIPSFLSHXXXXXXXXXX 189
CNL L NL L L+LSYN G +F
Sbjct: 364 ---------SDCCNL------QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAF 408
Query: 190 XXXXVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSL-NGTI-PS 247
V F NL L L+LS L L GL++L L L GNS +G+I +
Sbjct: 409 THLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKT 468
Query: 248 WLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQY 307
L ++ LE++ L L N+ + LS N+L+G + + LK L Y
Sbjct: 469 NLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGD-SMDALSHLKGL-Y 526
Query: 308 LYLSQNRLSV 317
L ++ N + +
Sbjct: 527 LNMASNNIRI 536
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 19/149 (12%)
Query: 517 LQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFY-GLIGNTDARVIFPKLRILDLSRN 575
L+VLN+++ +D + H LA L +L L L+ N F G I T+ + L IL LS
Sbjct: 426 LRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSC 485
Query: 576 EFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVI 635
+ + F L+ N + + + + G A LKG L +
Sbjct: 486 NLLSI-DQQAFHGLR------NVNHLDLSHNSLTGDSMDALSHLKG-----------LYL 527
Query: 636 DFSSNRFEGQIPEVVGKLNLLKMLNFSHN 664
+ +SN P ++ L+ ++N SHN
Sbjct: 528 NMASNNIRIIPPHLLPALSQQSIINLSHN 556
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 128/294 (43%), Gaps = 36/294 (12%)
Query: 445 IEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFE 504
++ +DL+ L+G +P + +L L L+ NSF+ +A+ L +L + N +
Sbjct: 279 VQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRK 337
Query: 505 GPL-PQSLANCSRLQVLNVANNRID--DTFPHWLAQLPELLVLILRSNKFYGLIGNTDAR 561
L + L LQ L+++++ I+ D L L L L L N+ GL A
Sbjct: 338 LDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGL--EDQAF 395
Query: 562 VIFPKLRILDLSRNEFTGVLPTRYFQNLK---------AMMRGSNTSTV----QVQYMHR 608
P+L +LD++ P FQNL ++ SN + +++++
Sbjct: 396 KECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNL 455
Query: 609 FGRYY-------SAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNF 661
G + + + G +E+ ILS ++ F G L + L+
Sbjct: 456 QGNSFQDGSISKTNLLQMVG-SLEILILSSCNLLSIDQQAFHG--------LRNVNHLDL 506
Query: 662 SHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLE 715
SHN LTG +L +L L L+++SN + P L +L+ S +NLSHN L+
Sbjct: 507 SHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQSIINLSHNPLD 559
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 105/243 (43%), Gaps = 58/243 (23%)
Query: 389 LTDVEQVPLKNLR------FLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTA 442
L VE V ++ L F DL +V L ++ ++ N+K+ +PCSF
Sbjct: 280 LGKVETVTIRRLHIPQFYLFYDL------STVYSLLEKVKRITVENSKVFL-VPCSFSQH 332
Query: 443 -APIEFIDLSNNSLSGPIPECLVDSI---------TLIWLDLHLNSFNGSIPQISANGSG 492
+EF+DLS N + + E L +S TL+ HL S + +I
Sbjct: 333 LKSLEFLDLSENLM---VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKT-GEILLTLKN 388
Query: 493 LVNLILNDNQFEGPLPQS-------------------LANC--SRLQVLNVANNRIDDTF 531
L +L ++ N F P+P S + C L+VL+V+NN +D +F
Sbjct: 389 LTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLD-SF 446
Query: 532 PHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKA 591
+L +L EL + NK L DA +FP L ++ +SRN+ V P F L +
Sbjct: 447 SLFLPRLQELYI---SRNKLKTL---PDAS-LFPVLLVMKISRNQLKSV-PDGIFDRLTS 498
Query: 592 MMR 594
+ +
Sbjct: 499 LQK 501
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 18/107 (16%)
Query: 493 LVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFY 552
+ L L+ NQF +P+ L+N L +++++NNRI + + +LL LIL N+
Sbjct: 33 VTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL- 90
Query: 553 GLIGNTDARVIFPK-------LRILDLSRNEFTGVLPTRYFQNLKAM 592
R I P+ LR+L L N+ + V+P F +L A+
Sbjct: 91 --------RCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSAL 128
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 200 SFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVI 259
SF N+TQL L LS+N+L P GL++L L L GN ++ +P F L L +
Sbjct: 73 SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHL 131
Query: 260 HLRDN 264
+ N
Sbjct: 132 AIGAN 136
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 646 IPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLS 705
+P+ + L +++ S+N ++ S N+T L +L LS NRL P L L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 706 KLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGFPLSDKC 747
L+L N + +P+G F S + +L + PL C
Sbjct: 106 LLSLHGNDIS-VVPEG----AFNDLSALSHLAIGANPLYCDC 142
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 102/249 (40%), Gaps = 30/249 (12%)
Query: 196 GIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGN--SLNGTIPSWLF--T 251
GIP S L +L N+L L L L LS N S G F T
Sbjct: 25 GIPSSATRL------ELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78
Query: 252 VLPYLEVIHLRDNRFTG--SIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLY 309
L YL++ F G ++ S L L + +NL E +F L+NL YL
Sbjct: 79 SLKYLDL------SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 132
Query: 310 LS--QNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRI 367
+S R++ N + S+ ++LK+ ++ + PD L +L LS+ ++
Sbjct: 133 ISHTHTRVAFNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 191
Query: 368 PNWFWDIGKDTLYNLNLSDNFLTDVEQVPLK---NLRFLDLRSNLLQGS----VMVLPPR 420
P F + +L LN+S N ++ P K +L+ LD N + S + P
Sbjct: 192 PTAFNSLS--SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 249
Query: 421 LIFFSISNN 429
L F +++ N
Sbjct: 250 LAFLNLTQN 258
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 92/204 (45%), Gaps = 38/204 (18%)
Query: 520 LNVANNRIDDTFPHWL-AQLPELLVLILRSN--KFYGLIGNTDARVIFPKLRILDLSRNE 576
L + +N++ + PH + +L +L L L SN F G +D L+ LDLS
Sbjct: 33 LELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT--SLKYLDLS--- 86
Query: 577 FTGVLP-TRYFQNLKAMMRGSNTSTVQVQYMH---RFGRYYSAFFTLKGIDVEMNILSIF 632
F GV+ + F L+ + + + H + +S F +L+ + I+
Sbjct: 87 FNGVITMSSNFLGLEQLEH--------LDFQHSNLKQMSEFSVFLSLRNL--------IY 130
Query: 633 LVIDFSSNR--FEGQIPEVVGKLNLLKML--NFSHNHLTGRIPSSLRNLTVLESLDLSSN 688
L I + R F G I + L +LKM +F N L I + LRNLT L DLS
Sbjct: 131 LDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFL---DLSQC 185
Query: 689 RLVGQIPTQLTSLNFLSKLNLSHN 712
+L PT SL+ L LN+SHN
Sbjct: 186 QLEQLSPTAFNSLSSLQVLNMSHN 209
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 4/157 (2%)
Query: 201 FVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIH 260
F++L L +LD+S GL +L L+++GNS +FT L L +
Sbjct: 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181
Query: 261 LRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTK 320
L + P+ L +L + +S NN ++ + L +LQ L S N + + K
Sbjct: 182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKK 240
Query: 321 LDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQ 357
+ L L L+ ++F Q L+W++
Sbjct: 241 QELQHFPSSLAFLNLTQ---NDFACTCEHQSFLQWIK 274
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 197 IPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYL 256
+PD F L L+FLDLS QL P+ L +L L +S N+ ++ ++ + L L
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSL 225
Query: 257 EVIHLRDNRFTGSIPSTIFEL-VNLTSIRLSSNNLSGHIELCMFAR-LKNLQYLYLSQNR 314
+V+ N S + +L + L+ N+ + E F + +K+ + L + R
Sbjct: 226 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVER 285
Query: 315 LSVNTKLD 322
+ T D
Sbjct: 286 MECATPSD 293
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 207 LSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRF 266
L+ L L N++T + LKGL NL L LS NS++ L P+L +HL +N+
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT-PHLRELHLNNNKL 252
Query: 267 TGSIPSTIFELVNLTSIRLSSNNLSG 292
+P + + + + L +NN+S
Sbjct: 253 V-KVPGGLADHKYIQVVYLHNNNISA 277
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 101/254 (39%), Gaps = 35/254 (13%)
Query: 208 SFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFT 267
+ LDL N++T K L+NL TL L N ++ P F L LE ++L N+
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-FAPLVKLERLYLSKNQLK 113
Query: 268 ---GSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRL-SVNTKLDA 323
+P T+ EL R+ N ++ + +F L + + L N L S + A
Sbjct: 114 ELPEKMPKTLQEL------RVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 166
Query: 324 NSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLN 383
KL + ++ NI+ P L L L L NKI G + L L
Sbjct: 167 FQGMKKLSYIRIADTNITTIPQGLPPS--LTELHLDGNKITKVDAASLK--GLNNLAKLG 222
Query: 384 LSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAA 443
LS N ++ V+ L N P L ++NNKL ++P
Sbjct: 223 LSFNSISAVDNGSLANT------------------PHLRELHLNNNKLV-KVPGGLADHK 263
Query: 444 PIEFIDLSNNSLSG 457
I+ + L NN++S
Sbjct: 264 YIQVVYLHNNNISA 277
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 207 LSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRF 266
L+ L L N++T + LKGL NL L LS NS++ L P+L +HL +N+
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT-PHLRELHLNNNKL 252
Query: 267 TGSIPSTIFELVNLTSIRLSSNNLSG 292
+P + + + + L +NN+S
Sbjct: 253 V-KVPGGLADHKYIQVVYLHNNNISA 277
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 101/254 (39%), Gaps = 35/254 (13%)
Query: 208 SFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFT 267
+ LDL N++T K L+NL TL L N ++ P F L LE ++L N+
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-FAPLVKLERLYLSKNQLK 113
Query: 268 ---GSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRL-SVNTKLDA 323
+P T+ EL R+ N ++ + +F L + + L N L S + A
Sbjct: 114 ELPEKMPKTLQEL------RVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 166
Query: 324 NSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLN 383
KL + ++ NI+ P L L L L NKI G + L L
Sbjct: 167 FQGMKKLSYIRIADTNITTIPQGLPPS--LTELHLDGNKITKVDAASLK--GLNNLAKLG 222
Query: 384 LSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAA 443
LS N ++ V+ L N P L ++NNKL ++P
Sbjct: 223 LSFNSISAVDNGSLANT------------------PHLRELHLNNNKLV-KVPGGLADHK 263
Query: 444 PIEFIDLSNNSLSG 457
I+ + L NN++S
Sbjct: 264 YIQVVYLHNNNISA 277
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 74/312 (23%), Positives = 124/312 (39%), Gaps = 42/312 (13%)
Query: 199 DSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSW-LFTVLPYLE 257
++F L+ L L L +NQ GL NL L L+ +L+G + S F L LE
Sbjct: 73 NTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE 132
Query: 258 VIHLRDNRFTGSIPSTIF-ELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLS 316
++ LRDN P++ F + + L+ N + E L N Q + + RLS
Sbjct: 133 MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE----EDLLNFQGKHFTLLRLS 188
Query: 317 VNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWD-IG 375
T D N + K G N S + L LS N + F+D I
Sbjct: 189 SITLQDMNEYWLGWEKCGNPFKNTS-----------ITTLDLSGNGFKESMAKRFFDAIA 237
Query: 376 KDTLYNLNLSDNF----------LTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIF-- 423
+ +L LS+++ D + K L +++ L S + + +F
Sbjct: 238 GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH 297
Query: 424 ------FSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSIT---LIWLDL 474
+++ N++ +F ++ + L N L +P+ + D +T IW L
Sbjct: 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKS-VPDGIFDRLTSLQKIW--L 354
Query: 475 HLNSFNGSIPQI 486
H N ++ S P+I
Sbjct: 355 HTNPWDCSCPRI 366
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 36/176 (20%)
Query: 379 LYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCS 438
L L L DN +TD+ PLKNL ++ +S N L +
Sbjct: 71 LIGLELKDNQITDL--TPLKNLT------------------KITELELSGNPLKNV--SA 108
Query: 439 FCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNL-- 496
I+ +DL++ ++ P + ++ +++LDL+ I IS +GL NL
Sbjct: 109 IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN------QITNISP-LAGLTNLQY 161
Query: 497 -ILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKF 551
+ +NQ P LAN S+L L +N+I D P LA LP L+ + L+ N+
Sbjct: 162 LSIGNNQVNDLTP--LANLSKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQI 213
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 85/207 (41%), Gaps = 56/207 (27%)
Query: 204 LTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRD 263
L L L+L NQ+T P LK L + L LSGN L
Sbjct: 68 LNNLIGLELKDNQITDLTP--LKNLTKITELELSGNPLKNV------------------- 106
Query: 264 NRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDA 323
S I L ++ ++ L+S ++ ++ A L NLQ LYL N+++ + L A
Sbjct: 107 --------SAIAGLQSIKTLDLTSTQIT---DVTPLAGLSNLQVLYLDLNQITNISPL-A 154
Query: 324 NSTFPKLLKLGLSACNISEFPDF--LRSQDRLEWLQLSENKI-----YGRIPNWFWDIGK 376
T + L +G + N D L + +L L+ +NKI +PN
Sbjct: 155 GLTNLQYLSIGNNQVN-----DLTPLANLSKLTTLRADDNKISDISPLASLPN------- 202
Query: 377 DTLYNLNLSDNFLTDVEQVPLKNLRFL 403
L ++L DN ++DV PL NL L
Sbjct: 203 --LIEVHLKDNQISDVS--PLANLSNL 225
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 80/175 (45%), Gaps = 30/175 (17%)
Query: 253 LPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQ 312
LP L ++L +N+ T P I L N+T + L+ N L+ ++ A LKNL +L+L +
Sbjct: 65 LPNLTSLNLSNNQITDISP--IQYLPNVTKLFLNGNKLT---DIKPLANLKNLGWLFLDE 119
Query: 313 NRLSV-----------------NTKLDANS--TFPKLLKLGLSACNISEFPDFLRSQDRL 353
N++ N D N P+L L L I++ L +L
Sbjct: 120 NKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKL 178
Query: 354 EWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVP-LKNLRFLDLRS 407
+ L L +N+I +P G L NL LS N ++D+ + LKNL L+L S
Sbjct: 179 DTLSLEDNQISDIVPLA----GLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 229
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 73/180 (40%), Gaps = 52/180 (28%)
Query: 156 LPQLTSLSLSYNHFSGHIPSFLSHXXXXXXXXXXXXXXVGGIPDSFVNLTQLSFLDLSWN 215
LP LTSL+LS N + P + +P N+T+L L+ N
Sbjct: 65 LPNLTSLNLSNNQITDISP-------------------IQYLP----NVTKLF---LNGN 98
Query: 216 QLTGRLPSCLKGLRNLVTLRLSGNSL-------------------NGTIPSWLFTVLPYL 256
+LT P L L+NL L L N + NG LP L
Sbjct: 99 KLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL 156
Query: 257 EVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLS 316
E ++L +N+ T + + L L ++ L N +S ++ A L LQ LYLS+N +S
Sbjct: 157 ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS---DIVPLAGLTKLQNLYLSKNHIS 211
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 13/148 (8%)
Query: 234 LRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGH 293
L LS N+L+ W T L L + L N + NL + LSSN+L
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103
Query: 294 IELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFP-DFLRSQDR 352
E +F+ L+ L+ L L N + V + +A +L KL LS IS FP + ++ ++
Sbjct: 104 DEF-LFSDLQALEVLLLYNNHIVVVDR-NAFEDMAQLQKLYLSQNQISRFPVELIKDGNK 161
Query: 353 LE---WLQLSENKIYG-------RIPNW 370
L L LS NK+ ++P W
Sbjct: 162 LPKLMLLDLSSNKLKKLPLTDLQKLPAW 189
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 60/144 (41%), Gaps = 30/144 (20%)
Query: 204 LTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRD 263
LT L L LS N L + NL L LS N L+ T+ +LF+ L LEV+ L +
Sbjct: 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYN 121
Query: 264 NRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLS---VNTK 320
N ++ F + LQ LYLSQN++S V
Sbjct: 122 NHIVV-------------------------VDRNAFEDMAQLQKLYLSQNQISRFPVELI 156
Query: 321 LDANSTFPKLLKLGLSACNISEFP 344
D N PKL+ L LS+ + + P
Sbjct: 157 KDGNK-LPKLMLLDLSSNKLKKLP 179
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 36/176 (20%)
Query: 379 LYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCS 438
L L L DN +TD+ PLKNL ++ +S N L +
Sbjct: 65 LIGLELKDNQITDL--APLKNLT------------------KITELELSGNPLKNV--SA 102
Query: 439 FCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNL-- 496
I+ +DL++ ++ P + ++ +++LDL+ I IS +GL NL
Sbjct: 103 IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN------QITNISP-LAGLTNLQY 155
Query: 497 -ILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKF 551
+ + Q P LAN S+L L +N+I D P LA LP L+ + L++N+
Sbjct: 156 LSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQI 207
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 78/195 (40%), Gaps = 52/195 (26%)
Query: 210 LDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGS 269
L+L NQ+T P LK L + L LSGN L
Sbjct: 68 LELKDNQITDLAP--LKNLTKITELELSGNPLKNV------------------------- 100
Query: 270 IPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPK 329
S I L ++ ++ L+S ++ ++ A L NLQ LYL N++ T + +
Sbjct: 101 --SAIAGLQSIKTLDLTSTQIT---DVTPLAGLSNLQVLYLDLNQI---TNISPLAGLTN 152
Query: 330 LLKLGLSACNISEFPDFLRSQDRLEWLQLSENKI-----YGRIPNWFWDIGKDTLYNLNL 384
L L + +S+ L + +L L+ +NKI +PN L ++L
Sbjct: 153 LQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISPLASLPN---------LIEVHL 202
Query: 385 SDNFLTDVEQVPLKN 399
+N ++DV PL N
Sbjct: 203 KNNQISDVS--PLAN 215
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 28/114 (24%)
Query: 201 FVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIH 260
F LTQL+ L LS NQ+ ++P +F L L +++
Sbjct: 48 FDKLTQLTKLSLSQNQIQ-------------------------SLPDGVFDKLTKLTILY 82
Query: 261 LRDNRFTGSIPSTIFE-LVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQN 313
L +N+ S+P+ +F+ L L + L +N L + +F RL +LQ ++L N
Sbjct: 83 LHENKLQ-SLPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 134
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 103/271 (38%), Gaps = 63/271 (23%)
Query: 498 LNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGN 557
LND Q E + A +Q L + N I PH +P L VL+L N L
Sbjct: 76 LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL--- 132
Query: 558 TDARVIF---PKLRILDLSRNEFTGV-----LPTRYFQNLKAMMRGSNTSTVQVQYMHRF 609
R IF PKL L +S N + T QNL+ + + + V +
Sbjct: 133 --PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ--LSSNRLTHVDL------ 182
Query: 610 GRYYSAFFTLKGIDVEMNILSIFLV------IDFSSNRFEGQIPEVVGKLNLLKM----- 658
S +L +V N+LS + +D S N V +L +LK+
Sbjct: 183 ----SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL 238
Query: 659 --------------LNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLV-----GQ-IPTQL 698
++ S+N L + + LE L +S+NRLV GQ IPT
Sbjct: 239 TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT-- 296
Query: 699 TSLNFLSKLNLSHNQLEGPIPQGPQFNTFQS 729
L L+LSHN L PQF+ ++
Sbjct: 297 -----LKVLDLSHNHLLHVERNQPQFDRLEN 322
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 245 IPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELV-NLTSIRLSSNNLSGHIELCMFARLK 303
+P +F +P L V+ L N + S+P IF LT++ +S+NNL IE F
Sbjct: 108 LPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATT 165
Query: 304 NLQYLYLSQNRLS 316
+LQ L LS NRL+
Sbjct: 166 SLQNLQLSSNRLT 178
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 245 IPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELV-NLTSIRLSSNNLSGHIELCMFARLK 303
+P +F +P L V+ L N + S+P IF LT++ +S+NNL IE F
Sbjct: 114 LPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATT 171
Query: 304 NLQYLYLSQNRLS 316
+LQ L LS NRL+
Sbjct: 172 SLQNLQLSSNRLT 184
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 107/277 (38%), Gaps = 71/277 (25%)
Query: 496 LILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLI 555
L LND Q E + A +Q L + N I PH +P L VL+L N L
Sbjct: 80 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL- 138
Query: 556 GNTDARVIF---PKLRILDLSRNEFTGV-----LPTRYFQNLKAMMRGSNTSTVQVQYMH 607
R IF PKL L +S N + T QNL+ + + + V +
Sbjct: 139 ----PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ--LSSNRLTHVDL---- 188
Query: 608 RFGRYYSAFFTLKGIDVEMNILSIFLV------IDFSSNRFEGQIPEVVGKLNL-LKMLN 660
S +L +V N+LS + +D S N I V G +N+ L +L
Sbjct: 189 ------SLIPSLFHANVSYNLLSTLAIPIAVEELDASHN----SINVVRGPVNVELTILK 238
Query: 661 FSHNHLT---------GRIPSSLR-------------NLTVLESLDLSSNRLV-----GQ 693
HN+LT G + L + LE L +S+NRLV GQ
Sbjct: 239 LQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ 298
Query: 694 -IPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQS 729
IPT L L+LSHN L PQF+ ++
Sbjct: 299 PIPT-------LKVLDLSHNHLLHVERNQPQFDRLEN 328
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 119/463 (25%), Positives = 187/463 (40%), Gaps = 96/463 (20%)
Query: 199 DSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEV 258
D+F +L L LDLS N L+ S L +L L L GN + LF L L+
Sbjct: 94 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 153
Query: 259 I---------HLRDNRFTG-----SIPSTIFELVNLTSIRLSS----NNLSGHIE----- 295
+ +R F G + L N S L S ++L+ H+
Sbjct: 154 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 213
Query: 296 LCMFAR-LKNLQYLYLSQNRLS----VNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQ 350
L +FA L +++YL L L+ +D S+ K L S F + L+
Sbjct: 214 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL 273
Query: 351 DRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSD--NFLTDVEQVPLKNLR------F 402
+ L+LSE + N D +N + SD + L VE V ++ L F
Sbjct: 274 RYI--LELSEVEFDDCTLNGLGD------FNPSESDVVSELGKVETVTIRRLHIPQFYLF 325
Query: 403 LDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTA-APIEFIDLSNNSLSGPIPE 461
DL +V L ++ ++ N+K+ +PCSF +EF+DLS N + + E
Sbjct: 326 YDL------STVYSLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLM---VEE 375
Query: 462 CLVDSI---------TLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQS-- 510
L +S TL+ HL S + +I L +L ++ N F P+P S
Sbjct: 376 YLKNSACKGAWPSLQTLVLSQNHLRSMQKT-GEILLTLKNLTSLDISRNTFH-PMPDSCQ 433
Query: 511 -----------------LANC--SRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKF 551
+ C L+VL+V+NN + D+F +L +L EL + NK
Sbjct: 434 WPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNL-DSFSLFLPRLQELYI---SRNKL 489
Query: 552 YGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMR 594
L DA +FP L ++ ++ N+ V P F L ++ +
Sbjct: 490 KTL---PDAS-LFPVLLVMKIASNQLKSV-PDGIFDRLTSLQK 527
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 35/155 (22%)
Query: 223 SCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTS 282
S LK L NL L L+GN L ++P+ +F L L+ + L +N+ S+P +F+
Sbjct: 79 SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFD------ 130
Query: 283 IRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPK---LLKLGLSACN 339
+L NL YLYL N+L K F K L +L L
Sbjct: 131 ------------------KLTNLTYLYLYHNQLQSLPK----GVFDKLTNLTRLDLDNNQ 168
Query: 340 ISEFPDFLRSQ-DRLEWLQLSENKIYGRIPNWFWD 373
+ P+ + + +L+ L L++N++ +P+ +D
Sbjct: 169 LQSLPEGVFDKLTQLKQLSLNDNQLKS-VPDGVFD 202
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
Query: 649 VVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLN 708
V KL L L HN L LT L LDL +N+L L L +L+
Sbjct: 128 VFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLS 187
Query: 709 LSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGFPLSDKCSNI 750
L+ NQL+ +P G F + + ++ L P CS+I
Sbjct: 188 LNDNQLKS-VPDG----VFDRLTSLTHIWLLNNPWDCACSDI 224
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 253 LPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQ 312
LP LE ++L +N+ T + + L L ++ L N + + ARL LQ LYLS+
Sbjct: 131 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIR---RIVPLARLTKLQNLYLSK 185
Query: 313 NRLS 316
N +S
Sbjct: 186 NHIS 189
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 198 PDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLE 257
P F +LTQL++L+L+ NQLT L L L L N L +IP +F L L
Sbjct: 57 PGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLK-SIPMGVFDNLKSLT 115
Query: 258 VIHLRDN 264
I+L +N
Sbjct: 116 HIYLFNN 122
>pdb|3G04|C Chain C, Crystal Structure Of The Tsh Receptor In Complex With A
Thyroid- Stimulating Autoantibody
pdb|2XWT|C Chain C, Crystal Structure Of The Tsh Receptor In Complex With A
Blocking Type Tshr Autoantibody
Length = 239
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 11/138 (7%)
Query: 260 HLRDNRFTGSIPSTIFE-LVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVN 318
HLR +IPS F L N++ I +S + +E F L + ++ + R
Sbjct: 42 HLR------TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY 95
Query: 319 TKLDANSTFPKLLKLGLSACNISEFPDFLR--SQDRLEWLQLSENKIYGRIP-NWFWDIG 375
DA P L LG+ + FPD + S D L++++N IP N F +
Sbjct: 96 IDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC 155
Query: 376 KDTLYNLNLSDNFLTDVE 393
+TL L L +N T V+
Sbjct: 156 NETL-TLKLYNNGFTSVQ 172
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 111/283 (39%), Gaps = 42/283 (14%)
Query: 321 LDANSTFPKLLKLGLSACNISEFP-DFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTL 379
L+A T KL L L I E P DF D++E L S NK+ IPN F ++
Sbjct: 588 LEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKL-KYIPNIF---NAKSV 643
Query: 380 YNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSF 439
Y + S +F + +N+ + S + L I K E+ F
Sbjct: 644 Y-VXGSVDFSYNKIGSEGRNISCSXDDYKGINASTVTLSYNEI------QKFPTEL---F 693
Query: 440 CTAAPIEFIDLSNNSLSGPIPE--------CLVDSITLIWLDLHLNSFNGSIPQISANG- 490
T +PI I LSNN L IPE ++ L +DL N A
Sbjct: 694 ATGSPISTIILSNN-LXTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTL 752
Query: 491 SGLVNLILNDNQFEGPLPQSLANCSRLQVLNVAN------NRIDDTFPHWLAQLPELLVL 544
L N ++ N F P N S+L+ + + NRI +P + P L+ L
Sbjct: 753 PYLSNXDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL 811
Query: 545 ILRSNKFYGLIGNTDARVIFPKLRILDLSRN-----EFTGVLP 582
+ SN I D ++ P+L ILD++ N + T V P
Sbjct: 812 QIGSND----IRKVDEKLT-PQLYILDIADNPNISIDVTSVCP 849
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 253 LPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQ 312
LP LE ++L +N+ T + + L L ++ L N +S + L +L+NL YLS+
Sbjct: 128 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLACLTKLQNL---YLSK 182
Query: 313 NRLS 316
N +S
Sbjct: 183 NHIS 186
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
Query: 195 GGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLP 254
GIP T L L+ NQ+T P L NL L + N L IP+ +F L
Sbjct: 29 AGIP------TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLT 81
Query: 255 YLEVIHLRDNRFTGSIPSTIFE-LVNLTSIRLSSNNLSGHIELCMFAR 301
L + L DN SIP F+ L +LT I L +N M+ R
Sbjct: 82 QLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLR 128
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 253 LPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQ 312
LP LE ++L +N+ T + + L L ++ L N +S ++ A L LQ LYLS+
Sbjct: 151 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS---DIVPLAGLTKLQNLYLSK 205
Query: 313 NRLS 316
N +S
Sbjct: 206 NHIS 209
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 253 LPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQ 312
LP LE ++L +N+ T + + L L ++ L N +S ++ A L LQ LYLS+
Sbjct: 151 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS---DIVPLAGLTKLQNLYLSK 205
Query: 313 NRLS 316
N +S
Sbjct: 206 NHIS 209
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 253 LPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQ 312
LP LE ++L +N+ T + + L L ++ L N +S ++ A L LQ LYLS+
Sbjct: 151 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS---DIVPLAGLTKLQNLYLSK 205
Query: 313 NRLS 316
N +S
Sbjct: 206 NHIS 209
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 659 LNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPI 718
LN S N LT I L ++ LDL SN+ + IP Q+ L L +LN++ NQL+ +
Sbjct: 404 LNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQLKS-V 459
Query: 719 PQG 721
P G
Sbjct: 460 PDG 462
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 71/178 (39%), Gaps = 37/178 (20%)
Query: 520 LNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTG 579
L+ +NN + DT L EL LIL+ N+ L + L+ LD+S+N
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS--- 385
Query: 580 VLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNIL--SIF----- 632
V Y + G S +L +++ NIL +IF
Sbjct: 386 -----------------------VSYDEKKGD-CSWTKSLLSLNMSSNILTDTIFRCLPP 421
Query: 633 --LVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSN 688
V+D SN+ + IP+ V KL L+ LN + N L LT L+ + L +N
Sbjct: 422 RIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 27/112 (24%)
Query: 378 TLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPC 437
+L +LN+S N LTD LPPR+ + +NK+ IP
Sbjct: 400 SLLSLNMSSNILTDT--------------------IFRCLPPRIKVLDLHSNKIKS-IPK 438
Query: 438 SFCTAAPIEFIDLSNNSLSGPIPECLVDSIT---LIWLDLHLNSFNGSIPQI 486
++ +++++N L +P+ + D +T IW LH N ++ S P+I
Sbjct: 439 QVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIW--LHTNPWDCSCPRI 487
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 91/373 (24%), Positives = 157/373 (42%), Gaps = 38/373 (10%)
Query: 382 LNLSDNFLTDV---EQVPLKNLRFLDLRSNLLQG---SVMVLPPRLIFFSISNNKLTGEI 435
LN+S N+++++ + + L LR L + N +Q SV L + +S+NKL +I
Sbjct: 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KI 84
Query: 436 PCSFCTAAPIEFIDLSNNSLSG-PIPECLVDSITLIWLDLHLNSFNGS--IPQISANGSG 492
C ++ +DLS N+ PI + + L +L L S +P N S
Sbjct: 85 SCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISK 142
Query: 493 LVNLILNDNQFEGPLPQSLA--NCSRLQVLNVANNR---IDDTFPHWLAQLPEL--LVLI 545
++ L+L + E P+ L N L ++ N I D +A L EL + +
Sbjct: 143 VL-LVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANL-ELSNIKCV 200
Query: 546 LRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNL-KAMMRGSNTSTVQVQ 604
L NK + PKL L L+ E T R Q + + + S V++Q
Sbjct: 201 LEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQ 260
Query: 605 YMHRFGRYYSAFFTLKGIDVEMNILSIF-----LVIDFSSN----RFEGQIPEVV----- 650
F + + +LK + + + +F + + SN F +V
Sbjct: 261 GQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCP 320
Query: 651 GKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRL--VGQIPTQLTSLNFLSKLN 708
K++ L+FS+N LT + + +LT LE+L L N+L + +I T + L +L+
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380
Query: 709 LSHNQLEGPIPQG 721
+S N + +G
Sbjct: 381 ISQNSVSYDEKKG 393
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 64/167 (38%), Gaps = 44/167 (26%)
Query: 591 AMMRGSNTSTVQVQYM--HRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPE 648
AM++G +V+ + HRF S F + +D ++ +G +P
Sbjct: 243 AMLKGLCEMSVESLNLQEHRFSDISSTTF---------QCFTQLQELDLTATHLKG-LPS 292
Query: 649 VVGKLNLLKMLNFSHNHL-------TGRIPS------------------SLRNLTVLESL 683
+ LNLLK L S NH PS L L L++L
Sbjct: 293 GMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTL 352
Query: 684 DLSSNRLVGQ--IPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQ 728
DLS N + QL +L+ L LNLSHN+ P G Q F+
Sbjct: 353 DLSHNDIEASDCCSLQLKNLSHLQTLNLSHNE-----PLGLQSQAFK 394
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 122/297 (41%), Gaps = 28/297 (9%)
Query: 438 SFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLI 497
+F ++ +DL+ L G +P + L L L +N F+ +AN L +L
Sbjct: 270 TFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLY 328
Query: 498 LNDNQFEGPLP-QSLANCSRLQVLNVANNRID--DTFPHWLAQLPELLVLILRSNKFYGL 554
+ N + L L LQ L++++N I+ D L L L L L N+ GL
Sbjct: 329 IRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGL 388
Query: 555 IGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLK---------AMMRGSNTSTVQ--- 602
+ A P+L +LDL+ P FQNL + SN +
Sbjct: 389 --QSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLP 446
Query: 603 -VQYMHRFGRYYSAFFTLKGIDVEMNILSI---FLVIDFSSNRFEGQIPEVVGKLNLLKM 658
+++++ G ++ G + N+L V+ SS + L +
Sbjct: 447 VLRHLNLKGNHFQ-----DGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSH 501
Query: 659 LNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLE 715
++ SHN LT SL +L + L+L++N + P L L+ S +NLSHN L+
Sbjct: 502 VDLSHNSLTCDSIDSLSHLKGI-YLNLAANSINIISPRLLPILSQQSTINLSHNPLD 557
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 253 LPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQ 312
LP LE ++L +N+ T + + L L ++ L N +S ++ A L LQ LYLS+
Sbjct: 128 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS---DIVPLAGLTKLQNLYLSK 182
Query: 313 NRLS 316
N +S
Sbjct: 183 NHIS 186
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 200 SFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVI 259
SF N ++L +LDLS ++ GL +L L L+GN + P F+ L LE +
Sbjct: 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS-FSGLTSLENL 109
Query: 260 HLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNT 319
+ + I +L+ L + ++ N + F+ L NL ++ LS N + T
Sbjct: 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 25/116 (21%)
Query: 200 SFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVI 259
+F++L +L +LD+S+ GL +L TL+++GNS
Sbjct: 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS------------------- 459
Query: 260 HLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRL 315
+DN + +T NLT + LS L I +F L LQ L +S N L
Sbjct: 460 -FKDNTLSNVFANT----TNLTFLDLSKCQLE-QISWGVFDTLHRLQLLNMSHNNL 509
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 650 VGKLNLLKMLNFSHNHL-TGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLN 708
+G+L LK LN +HN + + ++P+ NLT L +DLS N + L L ++N
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183
Query: 709 LSHNQLEGPI 718
LS + PI
Sbjct: 184 LSLDMSLNPI 193
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 94/233 (40%), Gaps = 32/233 (13%)
Query: 509 QSLANCSRLQVLNVANNRIDDTFPHW-----------LAQLPELLVLILRSNKFYGLIGN 557
LAN S + + V+ ++D H+ L Q P L + L+S G+
Sbjct: 282 HCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGS 341
Query: 558 TD-ARVIFPKLRILDLSRN--EFTGV-----LPTRYFQNLKAMMRGSNTSTVQVQYMHRF 609
+V P L LDLSRN F+G L T ++L G+ + +
Sbjct: 342 ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEEL 401
Query: 610 GRYYSAFFTLKGIDVEMNILS----IFLVIDFSSNR--FEGQIPEVVGKLNLLKML--NF 661
TLK + LS ++L I +++ + F+G I + LN LKM +F
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG-IFLGLTSLNTLKMAGNSF 460
Query: 662 SHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQL 714
N L+ N T L LDLS +L +L+ L LN+SHN L
Sbjct: 461 KDNTLSNVFA----NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 93/234 (39%), Gaps = 56/234 (23%)
Query: 253 LPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLS---------------GHIELC 297
LP+L+ + L N+ GSI L +L+ + LS N LS H++L
Sbjct: 327 LPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS 384
Query: 298 M---------FARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNIS-EFPDFL 347
F L+ LQ+L + L T+ A + KLL L +S N +F
Sbjct: 385 FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF 444
Query: 348 RSQDRLEWLQLSENK--------IYGRIPNW-FWDIGK-----------DTLYN---LNL 384
L L+++ N ++ N F D+ K DTL+ LN+
Sbjct: 445 LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 504
Query: 385 SDN---FLTDVEQVPLKNLRFLDLRSNLLQGSVMVL---PPRLIFFSISNNKLT 432
S N FL L +L LD N ++ S +L P L FF+++NN +
Sbjct: 505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 44 SSLISSGFGRLISLTHLNLSNSYF-SGQIPSEISQLSKMLSLDLSKN 89
+SL S G+LI+L LN+++++ S ++P+ S L+ ++ +DLS N
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 199 DSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEV 258
DSF +L L LDLS+N L+ S K L +L L L GN + LF+ L L++
Sbjct: 94 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153
Query: 259 IHL 261
+ +
Sbjct: 154 LRV 156
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 237 SGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIEL 296
S SLN +IPS L + L+ L +NR T S + VNL ++ L+SN ++ IE
Sbjct: 39 SSGSLN-SIPSGLTEAVKSLD---LSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEE 93
Query: 297 CMFARLKNLQYLYLSQNRLS 316
F+ L +L++L LS N LS
Sbjct: 94 DSFSSLGSLEHLDLSYNYLS 113
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 200 SFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVI 259
SF N ++L +LDLS ++ GL +L L L+GN + P F+ L LE +
Sbjct: 46 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS-FSGLTSLENL 104
Query: 260 HLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNT 319
+ + I +L+ L + ++ N + F+ L NL ++ LS N + T
Sbjct: 105 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 164
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 25/116 (21%)
Query: 200 SFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVI 259
+F++L +L +LD+S+ GL +L TL+++GNS
Sbjct: 414 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS------------------- 454
Query: 260 HLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRL 315
+DN + +T NLT + LS L I +F L LQ L +S N L
Sbjct: 455 -FKDNTLSNVFANT----TNLTFLDLSKCQLE-QISWGVFDTLHRLQLLNMSHNNL 504
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 650 VGKLNLLKMLNFSHNHL-TGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLN 708
+G+L LK LN +HN + + ++P+ NLT L +DLS N + L L ++N
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 178
Query: 709 LSHNQLEGPI 718
LS + PI
Sbjct: 179 LSLDMSLNPI 188
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 94/233 (40%), Gaps = 32/233 (13%)
Query: 509 QSLANCSRLQVLNVANNRIDDTFPHW-----------LAQLPELLVLILRSNKFYGLIGN 557
LAN S + + V+ ++D H+ L Q P L + L+S G+
Sbjct: 277 HCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGS 336
Query: 558 TD-ARVIFPKLRILDLSRN--EFTGV-----LPTRYFQNLKAMMRGSNTSTVQVQYMHRF 609
+V P L LDLSRN F+G L T ++L G+ + +
Sbjct: 337 ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEEL 396
Query: 610 GRYYSAFFTLKGIDVEMNILS----IFLVIDFSSNR--FEGQIPEVVGKLNLLKML--NF 661
TLK + LS ++L I +++ + F+G I + LN LKM +F
Sbjct: 397 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG-IFLGLTSLNTLKMAGNSF 455
Query: 662 SHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQL 714
N L+ N T L LDLS +L +L+ L LN+SHN L
Sbjct: 456 KDNTLSNVFA----NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 504
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 93/234 (39%), Gaps = 56/234 (23%)
Query: 253 LPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLS---------------GHIELC 297
LP+L+ + L N+ GSI L +L+ + LS N LS H++L
Sbjct: 322 LPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS 379
Query: 298 M---------FARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNIS-EFPDFL 347
F L+ LQ+L + L T+ A + KLL L +S N +F
Sbjct: 380 FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF 439
Query: 348 RSQDRLEWLQLSENK--------IYGRIPNW-FWDIGK-----------DTLYN---LNL 384
L L+++ N ++ N F D+ K DTL+ LN+
Sbjct: 440 LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 499
Query: 385 SDN---FLTDVEQVPLKNLRFLDLRSNLLQGSVMVL---PPRLIFFSISNNKLT 432
S N FL L +L LD N ++ S +L P L FF+++NN +
Sbjct: 500 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 553
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 44 SSLISSGFGRLISLTHLNLSNSYF-SGQIPSEISQLSKMLSLDLSKN 89
+SL S G+LI+L LN+++++ S ++P+ S L+ ++ +DLS N
Sbjct: 112 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 253 LPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQ 312
LP LE ++L +N+ T + + L L ++ L N +S ++ A L LQ LYLS+
Sbjct: 130 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS---DIVPLAGLTKLQNLYLSK 184
Query: 313 NRLS 316
N +S
Sbjct: 185 NHIS 188
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 198 PDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLE 257
P SF L+ L L + +Q++ + GL +LV L L+ N+L+ ++P LFT L YL
Sbjct: 235 PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLV 293
Query: 258 VIHLRDN 264
+HL N
Sbjct: 294 ELHLHHN 300
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 84/356 (23%), Positives = 141/356 (39%), Gaps = 81/356 (22%)
Query: 50 GFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKL 109
G L +L +LNL+ + + P +S L K+ +L + N I + ++NLT L
Sbjct: 61 GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISA------LQNLTNL 112
Query: 110 KELVLSEVDMSTIVLDXXXXXXXXXXXXXXXXGCNLIGPIPASLANLPQLTSLSLSYNH- 168
+EL L+E ++S I + LANL + SL+L NH
Sbjct: 113 RELYLNEDNISDI----------------------------SPLANLTKXYSLNLGANHN 144
Query: 169 FSGHIPSFLSHXXXXXXXXXXXXXXVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGL 228
S P N T L++L ++ +++ P + L
Sbjct: 145 LSDLSP--------------------------LSNXTGLNYLTVTESKVKDVTP--IANL 176
Query: 229 RNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSN 288
+L +L L+ N + P T L Y N+ T P + L S+++ +N
Sbjct: 177 TDLYSLSLNYNQIEDISPLASLTSLHYFTAYV---NQITDITP--VANXTRLNSLKIGNN 231
Query: 289 NLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLR 348
++ +L A L L +L + N++S ++A KL L + + IS+ L
Sbjct: 232 KIT---DLSPLANLSQLTWLEIGTNQIS---DINAVKDLTKLKXLNVGSNQISDIS-VLN 284
Query: 349 SQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLD 404
+ +L L L+ N++ G L L LS N +TD+ PL +L D
Sbjct: 285 NLSQLNSLFLNNNQLGNEDXEVIG--GLTNLTTLFLSQNHITDIR--PLASLSKXD 336
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 83/202 (41%), Gaps = 35/202 (17%)
Query: 488 ANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILR 547
AN + L +L LN NQ E P LA+ + L N+I D P +A L L +
Sbjct: 174 ANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANXTRLNSLKIG 229
Query: 548 SNKFYGL--IGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQY 605
+NK L + N +L L++ N+ + + + LK + GSN + +
Sbjct: 230 NNKITDLSPLAN------LSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQIS-DISV 282
Query: 606 MHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNH 665
++ + S F ++N+ + EV+G L L L S NH
Sbjct: 283 LNNLSQLNSLFL--------------------NNNQLGNEDXEVIGGLTNLTTLFLSQNH 322
Query: 666 LTGRIPSSLRNLTVLESLDLSS 687
+T P L +L+ +S D ++
Sbjct: 323 ITDIRP--LASLSKXDSADFAN 342
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 28/151 (18%)
Query: 277 LVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSV-----------------NT 319
L N+T + L+ N L+ ++ A LKNL +L+L +N++ N
Sbjct: 67 LPNVTKLFLNGNKLT---DIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNG 123
Query: 320 KLDANS--TFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKD 377
D N P+L L L I++ L +L+ L L +N+I +P G
Sbjct: 124 ISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVPL----AGLT 178
Query: 378 TLYNLNLSDNFLTDVEQVP-LKNLRFLDLRS 407
L NL LS N ++D+ + LKNL L+L S
Sbjct: 179 KLQNLYLSKNHISDLRALAGLKNLDVLELFS 209
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 28/151 (18%)
Query: 277 LVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSV-----------------NT 319
L N+T + L+ N L+ ++ A LKNL +L+L +N++ N
Sbjct: 67 LPNVTKLFLNGNKLT---DIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNG 123
Query: 320 KLDANS--TFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKD 377
D N P+L L L I++ L +L+ L L +N+I +P G
Sbjct: 124 ISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVPLA----GLT 178
Query: 378 TLYNLNLSDNFLTDVEQVP-LKNLRFLDLRS 407
L NL LS N ++D+ + LKNL L+L S
Sbjct: 179 KLQNLYLSKNHISDLRALAGLKNLDVLELFS 209
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 652 KLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTS 700
K + L L + N LT +P+ ++NL+ L LDLS NRL +P +L S
Sbjct: 245 KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGS 291
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 198 PDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLE 257
P SF LT L L L Q+ + L++L L LS N+L ++P LFT L LE
Sbjct: 195 PGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL-MSLPHDLFTPLHRLE 253
Query: 258 VIHLRDN 264
+HL N
Sbjct: 254 RVHLNHN 260
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 657 KMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEG 716
++L N +T P LT L LDL +N+L L L++L+L+ NQL+
Sbjct: 41 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 100
Query: 717 PIPQGPQFNTFQSDSYI 733
IP+G F+ +S ++I
Sbjct: 101 -IPRG-AFDNLKSLTHI 115
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 43/107 (40%), Gaps = 16/107 (14%)
Query: 198 PDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLE 257
P F LTQL+ LDL NQLT L L L L+ N L +IP F L L
Sbjct: 55 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLT 113
Query: 258 VIHLRDN-------------RFTGSIPSTIFELVNL--TSIRLSSNN 289
I L +N R+ P +F +NL S R S N
Sbjct: 114 HIWLLNNPWDCACSDILYLSRWISQHPGLVFGYLNLDPDSARCSGTN 160
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 28/151 (18%)
Query: 277 LVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSV-----------------NT 319
L N+T + L+ N L+ ++ A LKNL +L+L +N++ N
Sbjct: 65 LPNVTKLFLNGNKLT---DIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNG 121
Query: 320 KLDANS--TFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKD 377
D N P+L L L I++ L +L+ L L +N+I +P G
Sbjct: 122 ISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVPLA----GLT 176
Query: 378 TLYNLNLSDNFLTDVEQVP-LKNLRFLDLRS 407
L NL LS N ++D+ + LKNL L+L S
Sbjct: 177 KLQNLYLSKNHISDLRALAGLKNLDVLELFS 207
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 657 KMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEG 716
++L N +T P LT L LDL +N+L L L++L+L+ NQL+
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 717 PIPQGPQFNTFQSDSYI 733
IP+G F+ +S ++I
Sbjct: 93 -IPRG-AFDNLKSLTHI 107
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 43/107 (40%), Gaps = 16/107 (14%)
Query: 198 PDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLE 257
P F LTQL+ LDL NQLT L L L L+ N L +IP F L L
Sbjct: 47 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLT 105
Query: 258 VIHLRDN-------------RFTGSIPSTIFELVNL--TSIRLSSNN 289
I L +N R+ P +F +NL S R S N
Sbjct: 106 HIWLLNNPWDCACSDILYLSRWISQHPGLVFGYLNLDPDSARCSGTN 152
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 657 KMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEG 716
++L N +T P LT L LDL +N+L L L++L+L+ NQL+
Sbjct: 33 QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 717 PIPQGPQFNTFQSDSYIGNLGLCGFPLSDKCSNI 750
IP+G F+ +S ++I L P CS+I
Sbjct: 93 -IPRG-AFDNLRSLTHI---WLLNNPWDCACSDI 121
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 91/214 (42%), Gaps = 22/214 (10%)
Query: 148 PIPASLANLPQLTSLSLSYNHFSGHIPSFLSHXXXXXXXXXXXXXXVGGIPDSFVNLT-Q 206
P+ SL +L L YN G +P+F S + IP +F T Q
Sbjct: 321 PVETSLQKXKKLGXLECLYNQLEGKLPAFGSE--IKLASLNLAYNQITEIPANFCGFTEQ 378
Query: 207 LSFLDLSWNQLTGRLPSCL--KGLRNLVTLRLSGNSLNGTIPSWLFTVL---PY----LE 257
+ L + N+L +P+ K + + S N + G++ F L P+ +
Sbjct: 379 VENLSFAHNKLK-YIPNIFDAKSVSVXSAIDFSYNEI-GSVDGKNFDPLDPTPFKGINVS 436
Query: 258 VIHLRDNRFTGSIPSTIFELVN-LTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQN--- 313
I+L +N+ + P +F + L+SI L N L+ + + +N + YL +
Sbjct: 437 SINLSNNQIS-KFPKELFSTGSPLSSINLXGNXLTEIPKNSLKDENENFKNTYLLTSIDL 495
Query: 314 RLSVNTKLDAN---STFPKLLKLGLSACNISEFP 344
R + TKL + +T P L+ + LS + S+FP
Sbjct: 496 RFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFP 529
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 198 PDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLE 257
P SF LT L L L Q+ + L++L L LS N+L ++P LFT L LE
Sbjct: 195 PGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL-MSLPHDLFTPLHRLE 253
Query: 258 VIHLRDN 264
+HL N
Sbjct: 254 RVHLNHN 260
>pdb|2ZUS|A Chain A, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase
pdb|2ZUS|B Chain B, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase
pdb|2ZUS|C Chain C, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase
pdb|2ZUS|D Chain D, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase
pdb|2ZUT|A Chain A, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Galnac
pdb|2ZUT|B Chain B, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Galnac
pdb|2ZUT|C Chain C, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Galnac
pdb|2ZUT|D Chain D, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Galnac
pdb|2ZUU|A Chain A, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac
pdb|2ZUU|B Chain B, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac
pdb|2ZUU|C Chain C, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac
pdb|2ZUU|D Chain D, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac
pdb|2ZUV|A Chain A, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac, Ethylene Glycol,
And Nitrate
pdb|2ZUV|B Chain B, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac, Ethylene Glycol,
And Nitrate
pdb|2ZUW|A Chain A, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac And Sulfate
pdb|2ZUW|B Chain B, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac And Sulfate
pdb|2ZUW|C Chain C, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac And Sulfate
pdb|2ZUW|D Chain D, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac And Sulfate
Length = 759
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 476 LNSF--NGSIPQISANGSGLVNLILND-----NQFEGPLPQSLANCSRLQVLNVANNRID 528
LN++ N ++ + A+G G V L ND + LP S AN L+ + + +
Sbjct: 633 LNTYPVNENVTLLRADG-GQVQLATNDYGKGRGVYISGLPYSAANARLLERVLFYASHNE 691
Query: 529 DTFPHWLAQLPELLVLILRSNKFYGLIGNTD 559
D + W + PE V Y +I NTD
Sbjct: 692 DKYAAWSSSNPECEVAHFPEQGLYCVINNTD 722
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,471,058
Number of Sequences: 62578
Number of extensions: 908836
Number of successful extensions: 2990
Number of sequences better than 100.0: 118
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 1922
Number of HSP's gapped (non-prelim): 600
length of query: 816
length of database: 14,973,337
effective HSP length: 107
effective length of query: 709
effective length of database: 8,277,491
effective search space: 5868741119
effective search space used: 5868741119
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)