Query 003488
Match_columns 816
No_of_seqs 664 out of 5312
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 00:23:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003488.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003488hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 8.8E-64 1.9E-68 608.7 44.0 543 29-742 68-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 6E-56 1.3E-60 540.1 42.4 497 133-721 69-566 (968)
3 KOG4194 Membrane glycoprotein 100.0 6.6E-37 1.4E-41 313.4 7.3 364 110-548 81-448 (873)
4 KOG4194 Membrane glycoprotein 100.0 7.5E-37 1.6E-41 313.0 7.0 379 158-587 79-461 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 3.3E-39 7.1E-44 316.4 -12.5 474 133-715 45-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 1.7E-38 3.7E-43 311.4 -11.7 477 31-552 46-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 1E-35 2.2E-40 321.2 -4.2 480 138-713 3-487 (1081)
8 KOG0618 Serine/threonine phosp 100.0 5.5E-35 1.2E-39 315.6 -2.8 439 134-712 69-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 1.5E-32 3.3E-37 283.1 -3.2 370 106-532 6-379 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 4.1E-32 8.9E-37 279.9 -3.0 390 26-523 3-394 (1255)
11 KOG4237 Extracellular matrix p 99.9 1.4E-25 3.1E-30 220.7 -1.0 290 182-528 68-359 (498)
12 PLN03210 Resistant to P. syrin 99.9 1.6E-21 3.4E-26 237.8 27.5 359 3-386 531-902 (1153)
13 PLN03210 Resistant to P. syrin 99.9 1.6E-21 3.5E-26 237.7 27.1 213 327-550 680-904 (1153)
14 KOG4237 Extracellular matrix p 99.9 2.9E-25 6.4E-30 218.5 -5.1 296 127-504 61-359 (498)
15 PRK15387 E3 ubiquitin-protein 99.9 1.7E-21 3.7E-26 219.4 18.0 261 353-720 203-463 (788)
16 PRK15387 E3 ubiquitin-protein 99.9 2.5E-21 5.4E-26 218.1 17.0 266 329-700 202-467 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 3.2E-19 6.9E-24 202.8 12.7 98 444-553 242-339 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 6.3E-19 1.4E-23 200.4 14.3 246 400-716 180-429 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 2E-18 4.4E-23 183.4 6.3 278 35-313 3-317 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 2.9E-18 6.3E-23 182.2 3.2 279 8-290 2-319 (319)
21 KOG0617 Ras suppressor protein 99.7 2.2E-18 4.7E-23 150.7 -4.6 182 489-719 31-216 (264)
22 PLN03150 hypothetical protein; 99.6 2.1E-15 4.6E-20 171.5 12.6 118 631-748 419-538 (623)
23 KOG0617 Ras suppressor protein 99.5 2.6E-16 5.7E-21 137.8 -4.3 153 133-291 33-186 (264)
24 PLN03150 hypothetical protein; 99.3 5.3E-12 1.1E-16 144.0 9.6 113 566-719 419-532 (623)
25 KOG1909 Ran GTPase-activating 99.2 9.7E-13 2.1E-17 129.3 -1.5 252 26-290 26-310 (382)
26 KOG0532 Leucine-rich repeat (L 99.2 4.7E-13 1E-17 139.2 -4.9 189 472-713 80-271 (722)
27 KOG3207 Beta-tubulin folding c 99.1 1.7E-11 3.7E-16 123.9 1.6 163 28-194 119-284 (505)
28 KOG1909 Ran GTPase-activating 99.1 9.8E-12 2.1E-16 122.4 -0.3 237 4-266 30-310 (382)
29 KOG0532 Leucine-rich repeat (L 99.1 3.1E-12 6.8E-17 133.2 -4.1 191 446-689 78-271 (722)
30 KOG1259 Nischarin, modulator o 99.1 3.4E-11 7.3E-16 115.6 2.6 133 537-718 282-415 (490)
31 COG4886 Leucine-rich repeat (L 99.1 1.4E-10 3E-15 126.8 7.6 84 632-719 211-294 (394)
32 KOG3207 Beta-tubulin folding c 99.1 2.6E-11 5.7E-16 122.6 1.1 136 228-363 196-338 (505)
33 COG4886 Leucine-rich repeat (L 99.1 2.2E-10 4.8E-15 125.2 7.4 201 447-699 97-298 (394)
34 KOG2120 SCF ubiquitin ligase, 99.0 1E-11 2.2E-16 119.1 -5.2 180 31-214 186-372 (419)
35 KOG1259 Nischarin, modulator o 99.0 1.2E-10 2.6E-15 111.8 1.6 128 181-315 284-411 (490)
36 PF14580 LRR_9: Leucine-rich r 98.9 8.8E-10 1.9E-14 102.4 3.6 110 201-316 15-126 (175)
37 PF14580 LRR_9: Leucine-rich r 98.9 1.2E-09 2.6E-14 101.5 4.5 130 177-311 15-148 (175)
38 PF13855 LRR_8: Leucine rich r 98.9 1.2E-09 2.6E-14 83.3 3.4 60 655-714 2-61 (61)
39 KOG0531 Protein phosphatase 1, 98.9 3.2E-10 6.9E-15 123.9 -0.3 225 439-719 91-322 (414)
40 PF13855 LRR_8: Leucine rich r 98.8 2.7E-09 5.8E-14 81.3 3.5 61 630-690 1-61 (61)
41 KOG4658 Apoptotic ATPase [Sign 98.8 1.1E-08 2.3E-13 119.4 7.4 271 4-291 523-807 (889)
42 KOG0531 Protein phosphatase 1, 98.7 2.8E-09 6.2E-14 116.5 0.0 248 301-582 70-322 (414)
43 KOG4658 Apoptotic ATPase [Sign 98.7 1.6E-08 3.5E-13 117.9 5.9 203 157-366 523-732 (889)
44 KOG1859 Leucine-rich repeat pr 98.5 2.3E-09 5.1E-14 115.0 -8.5 58 516-578 165-222 (1096)
45 KOG4579 Leucine-rich repeat (L 98.5 9.8E-09 2.1E-13 87.4 -3.1 59 631-691 78-136 (177)
46 COG5238 RNA1 Ran GTPase-activa 98.3 1.1E-07 2.5E-12 90.6 0.7 161 152-314 87-283 (388)
47 KOG1859 Leucine-rich repeat pr 98.3 1.6E-08 3.5E-13 108.7 -6.3 200 106-317 83-293 (1096)
48 KOG2120 SCF ubiquitin ligase, 98.3 2.8E-08 6E-13 95.9 -5.4 133 230-362 186-324 (419)
49 KOG2982 Uncharacterized conser 98.2 2E-07 4.4E-12 90.1 -0.1 84 133-216 71-157 (418)
50 KOG2982 Uncharacterized conser 98.2 2.9E-07 6.4E-12 89.0 0.8 187 179-365 69-263 (418)
51 KOG4341 F-box protein containi 98.2 5.2E-08 1.1E-12 98.7 -5.1 278 31-313 139-436 (483)
52 KOG4341 F-box protein containi 98.1 2.4E-07 5.2E-12 94.0 -3.6 86 56-144 139-227 (483)
53 PF12799 LRR_4: Leucine Rich r 98.0 5.3E-06 1.1E-10 57.6 2.8 36 655-691 2-37 (44)
54 PRK15386 type III secretion pr 97.9 6.5E-05 1.4E-09 78.8 9.9 57 463-525 48-104 (426)
55 KOG4579 Leucine-rich repeat (L 97.9 5.6E-07 1.2E-11 76.9 -4.4 113 134-250 28-143 (177)
56 KOG3665 ZYG-1-like serine/thre 97.9 6.9E-06 1.5E-10 93.8 2.7 108 107-216 122-231 (699)
57 COG5238 RNA1 Ran GTPase-activa 97.9 1.1E-05 2.3E-10 77.4 3.5 235 4-242 30-316 (388)
58 PF12799 LRR_4: Leucine Rich r 97.8 1.7E-05 3.7E-10 55.0 3.2 37 631-668 2-38 (44)
59 PRK15386 type III secretion pr 97.7 0.0002 4.4E-09 75.2 9.8 13 302-314 51-63 (426)
60 KOG1644 U2-associated snRNP A' 97.7 7.7E-05 1.7E-09 68.8 5.8 58 206-266 43-100 (233)
61 KOG1644 U2-associated snRNP A' 97.7 7.5E-05 1.6E-09 68.8 5.5 84 229-315 42-125 (233)
62 KOG3665 ZYG-1-like serine/thre 97.6 2.5E-05 5.5E-10 89.2 2.6 152 55-213 122-283 (699)
63 PF13306 LRR_5: Leucine rich r 97.4 0.00039 8.4E-09 62.4 7.2 58 153-212 8-65 (129)
64 PF13306 LRR_5: Leucine rich r 97.4 0.0005 1.1E-08 61.6 7.2 123 175-305 6-128 (129)
65 KOG1947 Leucine rich repeat pr 97.2 7.6E-05 1.7E-09 84.3 -0.7 114 78-193 187-307 (482)
66 KOG2739 Leucine-rich acidic nu 96.9 0.00088 1.9E-08 64.8 3.8 91 25-121 38-130 (260)
67 KOG1947 Leucine rich repeat pr 96.7 0.00044 9.5E-09 78.1 0.1 239 28-290 186-439 (482)
68 KOG2123 Uncharacterized conser 96.7 0.00013 2.8E-09 70.5 -3.5 88 28-123 17-104 (388)
69 KOG2739 Leucine-rich acidic nu 96.5 0.0022 4.8E-08 62.1 3.3 66 513-579 63-130 (260)
70 KOG2123 Uncharacterized conser 96.4 0.00023 4.9E-09 68.9 -4.0 83 228-315 18-100 (388)
71 PF00560 LRR_1: Leucine Rich R 96.0 0.0031 6.8E-08 36.2 0.9 18 680-698 2-19 (22)
72 PF00560 LRR_1: Leucine Rich R 95.8 0.0034 7.3E-08 36.1 0.5 19 656-675 2-20 (22)
73 KOG4308 LRR-containing protein 94.9 0.00027 5.8E-09 77.4 -10.9 43 81-123 89-131 (478)
74 KOG4308 LRR-containing protein 93.0 0.0011 2.4E-08 72.7 -10.9 190 57-268 89-304 (478)
75 PF13504 LRR_7: Leucine rich r 91.6 0.12 2.5E-06 27.5 1.3 11 656-666 3-13 (17)
76 KOG0473 Leucine-rich repeat pr 90.9 0.011 2.3E-07 56.1 -5.2 85 628-715 40-124 (326)
77 smart00369 LRR_TYP Leucine-ric 89.9 0.23 5E-06 29.7 1.7 16 678-693 2-17 (26)
78 smart00370 LRR Leucine-rich re 89.9 0.23 5E-06 29.7 1.7 16 678-693 2-17 (26)
79 smart00370 LRR Leucine-rich re 86.9 0.48 1E-05 28.3 1.8 17 653-669 1-17 (26)
80 smart00369 LRR_TYP Leucine-ric 86.9 0.48 1E-05 28.3 1.8 17 653-669 1-17 (26)
81 KOG3864 Uncharacterized conser 85.5 0.15 3.3E-06 47.7 -1.4 84 204-287 100-185 (221)
82 KOG3864 Uncharacterized conser 85.4 0.13 2.8E-06 48.2 -1.9 82 32-117 103-186 (221)
83 KOG0473 Leucine-rich repeat pr 83.7 0.034 7.4E-07 52.8 -6.5 85 26-118 38-122 (326)
84 PF13516 LRR_6: Leucine Rich r 80.9 0.37 8.1E-06 28.2 -0.5 15 55-69 2-16 (24)
85 smart00365 LRR_SD22 Leucine-ri 72.8 2.8 6.2E-05 25.1 1.7 14 678-691 2-15 (26)
86 smart00364 LRR_BAC Leucine-ric 68.1 3.6 7.8E-05 24.6 1.4 13 655-667 3-15 (26)
87 smart00368 LRR_RI Leucine rich 62.8 5.6 0.00012 24.3 1.6 13 679-691 3-15 (28)
88 KOG4242 Predicted myosin-I-bin 59.8 58 0.0013 35.2 9.2 39 441-479 438-480 (553)
89 PF03302 VSP: Giardia variant- 58.7 6.8 0.00015 42.4 2.5 28 766-793 366-393 (397)
90 PTZ00382 Variant-specific surf 53.5 9.5 0.00021 31.6 2.0 23 768-790 67-89 (96)
91 KOG3763 mRNA export factor TAP 51.5 7.3 0.00016 42.6 1.3 63 628-692 216-284 (585)
92 PF04478 Mid2: Mid2 like cell 40.6 16 0.00036 32.7 1.5 20 767-786 51-70 (154)
93 TIGR00864 PCC polycystin catio 40.2 16 0.00035 48.3 2.0 33 660-692 1-33 (2740)
94 KOG3763 mRNA export factor TAP 38.7 18 0.00039 39.8 1.8 34 328-361 218-254 (585)
95 PF14991 MLANA: Protein melan- 35.8 12 0.00026 31.4 -0.0 25 779-803 35-59 (118)
96 smart00367 LRR_CC Leucine-rich 28.8 39 0.00084 20.0 1.4 12 515-526 2-13 (26)
97 TIGR00864 PCC polycystin catio 23.1 51 0.0011 44.0 2.3 32 636-667 1-32 (2740)
98 COG3105 Uncharacterized protei 21.6 53 0.0012 28.4 1.4 23 772-794 9-31 (138)
99 PF15179 Myc_target_1: Myc tar 20.1 19 0.0004 33.1 -1.7 31 771-801 26-56 (197)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=8.8e-64 Score=608.74 Aligned_cols=543 Identities=35% Similarity=0.555 Sum_probs=385.0
Q ss_pred CCCCCEEeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCchhhh-cCCCCCEEeCCCCCCccccCCcHHHHhhcCC
Q 003488 29 LPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEIS-QLSKMLSLDLSKNDEVRIESPVWKGLIENLT 107 (816)
Q Consensus 29 l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~-~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~ 107 (816)
..+++.|+|+++.+++. ++..|..+++|++|+|++|.+++.+|..+. .+++|++|++++|.+.....
T Consensus 68 ~~~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p----------- 135 (968)
T PLN00113 68 SSRVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP----------- 135 (968)
T ss_pred CCcEEEEEecCCCcccc-CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccC-----------
Confidence 45789999999988876 678899999999999999999888887665 78888888888875542111
Q ss_pred CCCEEeCCCccCCCccchhhhhccCCCCcEEEccCCcCCCCCCccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCEEE
Q 003488 108 KLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLN 187 (816)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 187 (816)
. ..+ ++|++|++++|.+.+.+|..++++++|++|++++|.+.+..|..+.++++|++|+
T Consensus 136 -----------------~---~~l-~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 194 (968)
T PLN00113 136 -----------------R---GSI-PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT 194 (968)
T ss_pred -----------------c---ccc-CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeee
Confidence 0 112 5566666666666666666666666677777766666666666666666677777
Q ss_pred ccCCcCCCCCCccccCCCCccEEEcccCCCCcCCcccCCCCCCCcEEECcCCCCCcccchhhhhCCCCccEEEccCCcCC
Q 003488 188 LEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFT 267 (816)
Q Consensus 188 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 267 (816)
+++|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+.. +++|++|++++|.+.
T Consensus 195 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN-LKNLQYLFLYQNKLS 273 (968)
T ss_pred ccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhC-CCCCCEEECcCCeee
Confidence 7666666666666666666666666666666666666666666666666666666555555443 666666666666666
Q ss_pred ccCchhhhcCCCCCEEEcccCCCcCccccccccCCCccceeeCCCccccccccCCCCCCCcCccEEeccCCCCCCCCccc
Q 003488 268 GSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFL 347 (816)
Q Consensus 268 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l 347 (816)
+.+|..+..+++|++|++++|.+.+.++ ..+.++++|+.|++++|.+. ..+|..+
T Consensus 274 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~l~~n~~~------------------------~~~~~~~ 328 (968)
T PLN00113 274 GPIPPSIFSLQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFSNNFT------------------------GKIPVAL 328 (968)
T ss_pred ccCchhHhhccCcCEEECcCCeeccCCC-hhHcCCCCCcEEECCCCccC------------------------CcCChhH
Confidence 6666666666666666666665554443 22333333443333333221 0122333
Q ss_pred cCCcccceeecccccccCCCCchhhccCCCccceEEcCCCcCCCCCCCCCCCCCEEecCCCcCCCcCCCCCCCccEEEcc
Q 003488 348 RSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSIS 427 (816)
Q Consensus 348 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~ 427 (816)
..+++|+.|++++|.+.+.
T Consensus 329 ~~l~~L~~L~L~~n~l~~~------------------------------------------------------------- 347 (968)
T PLN00113 329 TSLPRLQVLQLWSNKFSGE------------------------------------------------------------- 347 (968)
T ss_pred hcCCCCCEEECcCCCCcCc-------------------------------------------------------------
Confidence 3344444444444444433
Q ss_pred CCcccccccccccCCCCCCeEeCCCCCCCCCCCchhhccCCCCEEEccCCcCccCCCccccCCCCccEEEccCCcccCCC
Q 003488 428 NNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPL 507 (816)
Q Consensus 428 ~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 507 (816)
+|..+..+++|+.|++++|++.+.+|..+..+.+|+.|++++|.+.+.+|..+..+++|+.|++++|.+++..
T Consensus 348 -------~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~ 420 (968)
T PLN00113 348 -------IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL 420 (968)
T ss_pred -------CChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC
Confidence 3344444455556666666665555655555566666666666666666666666666666666666666666
Q ss_pred CcccCCCCCCcEEECcCCcCCCCCcccccCCCCCcEEEccCcccccccCCCcccccCCCCceeeCCCCcccccCchHHHh
Q 003488 508 PQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQ 587 (816)
Q Consensus 508 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~ 587 (816)
|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+..|.. ...++|+.||+++|++++.+|..+.
T Consensus 421 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~---~~~~~L~~L~ls~n~l~~~~~~~~~- 496 (968)
T PLN00113 421 PSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS---FGSKRLENLDLSRNQFSGAVPRKLG- 496 (968)
T ss_pred ChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcc---cccccceEEECcCCccCCccChhhh-
Confidence 666777777777777777777777766667777777777777776665422 2357889999999999988875431
Q ss_pred hhhhhhccCCCcccceeeccccccceeeEEEeecceecccccccceEEEccCCcccccCchhhhCCCCCcEEEccCCcCc
Q 003488 588 NLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLT 667 (816)
Q Consensus 588 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 667 (816)
.++.|+.|+|++|++++.+|..++++++|++|+|++|.++
T Consensus 497 ----------------------------------------~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 536 (968)
T PLN00113 497 ----------------------------------------SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS 536 (968)
T ss_pred ----------------------------------------hhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCccc
Confidence 4667889999999999999999999999999999999999
Q ss_pred ccCCccccccCCCCeEeCCCCcccccCccccCCcCcCCeEeCccCccccCCCCCCCCCccccccccCccCCCCCC
Q 003488 668 GRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGFP 742 (816)
Q Consensus 668 ~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~~lcg~~ 742 (816)
|.+|..++++++|+.|||++|+++|.+|..+..+++|+.|++++|+++|.+|..+++.++...+|.||+.+||.+
T Consensus 537 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 537 GQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred ccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999865
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6e-56 Score=540.07 Aligned_cols=497 Identities=35% Similarity=0.558 Sum_probs=376.8
Q ss_pred CCCcEEEccCCcCCCCCCccCCCCCCCCEEEccCCCCCCCchhhh-cCCCCCCEEEccCCcCCCCCCccccCCCCccEEE
Q 003488 133 SSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFL-SHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLD 211 (816)
Q Consensus 133 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 211 (816)
.+++.|++++|.+.+.++..+..+++|+.|+|++|.+++.+|..+ ..+++|++|++++|.+++.+|. +.+++|++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 456666666666666666666666677777777666665555543 3666677777776666655553 3456677777
Q ss_pred cccCCCCcCCcccCCCCCCCcEEECcCCCCCcccchhhhhCCCCccEEEccCCcCCccCchhhhcCCCCCEEEcccCCCc
Q 003488 212 LSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLS 291 (816)
Q Consensus 212 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 291 (816)
+++|.+.+..|..+..+++|++|++++|.+.+.+|..+.. +++|++|++++|.+.+.+|..++.+++|++|++++|.+.
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN-LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhh-CcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC
Confidence 7777666666666666667777777776666666665444 666777777777666666666666677777777777666
Q ss_pred CccccccccCCCccceeeCCCccccccccCCCCCCCcCccEEeccCCCCCCCCccccCCcccceeecccccccCCCCchh
Q 003488 292 GHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWF 371 (816)
Q Consensus 292 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~l~~n~l~~~~~~~~ 371 (816)
+.++ ..+.++++|++|++++|.+. ..+|..+..+++|++|++++|.+.+.+|..+
T Consensus 226 ~~~p-~~l~~l~~L~~L~L~~n~l~------------------------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 280 (968)
T PLN00113 226 GEIP-YEIGGLTSLNHLDLVYNNLT------------------------GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI 280 (968)
T ss_pred CcCC-hhHhcCCCCCEEECcCceec------------------------cccChhHhCCCCCCEEECcCCeeeccCchhH
Confidence 5555 34566666666666666432 1223334444455555555555544444444
Q ss_pred hccCCCccceEEcCCCcCCCCCCCCCCCCCEEecCCCcCCCcCCCCCCCccEEEccCCcccccccccccCCCCCCeEeCC
Q 003488 372 WDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLS 451 (816)
Q Consensus 372 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls 451 (816)
. .+++|++|++++|.+.+..+..+ ..+++|+.|++++|.+++.+|..+..+++|+.|+++
T Consensus 281 ~--~l~~L~~L~Ls~n~l~~~~p~~~------------------~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 340 (968)
T PLN00113 281 F--SLQKLISLDLSDNSLSGEIPELV------------------IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLW 340 (968)
T ss_pred h--hccCcCEEECcCCeeccCCChhH------------------cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECc
Confidence 3 33333333333333322111100 123345556666677777788888899999999999
Q ss_pred CCCCCCCCCchhhccCCCCEEEccCCcCccCCCccccCCCCccEEEccCCcccCCCCcccCCCCCCcEEECcCCcCCCCC
Q 003488 452 NNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTF 531 (816)
Q Consensus 452 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 531 (816)
+|.+.+.+|..+..+.+|+.|++++|++.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++..
T Consensus 341 ~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~ 420 (968)
T PLN00113 341 SNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL 420 (968)
T ss_pred CCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCcEEEccCcccccccCCCcccccCCCCceeeCCCCcccccCchHHHhhhhhhhccCCCcccceeecccccc
Q 003488 532 PHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGR 611 (816)
Q Consensus 532 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 611 (816)
|..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|++.+.+|..+
T Consensus 421 p~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~n~~~~~~p~~~-------------------------- 472 (968)
T PLN00113 421 PSEFTKLPLVYFLDISNNNLQGRIN--SRKWDMPSLQMLSLARNKFFGGLPDSF-------------------------- 472 (968)
T ss_pred ChhHhcCCCCCEEECcCCcccCccC--hhhccCCCCcEEECcCceeeeecCccc--------------------------
Confidence 9999999999999999999998865 345678999999999999998887432
Q ss_pred ceeeEEEeecceecccccccceEEEccCCcccccCchhhhCCCCCcEEEccCCcCcccCCccccccCCCCeEeCCCCccc
Q 003488 612 YYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLV 691 (816)
Q Consensus 612 ~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 691 (816)
....|+.||+++|++++.+|..+.++++|+.|+|++|++++.+|..++++++|++|+|++|.++
T Consensus 473 ----------------~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 536 (968)
T PLN00113 473 ----------------GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS 536 (968)
T ss_pred ----------------ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCccc
Confidence 2356889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccCCcCcCCeEeCccCccccCCCCC
Q 003488 692 GQIPTQLTSLNFLSKLNLSHNQLEGPIPQG 721 (816)
Q Consensus 692 ~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 721 (816)
+.+|..+..+++|+.|++++|+++|.+|..
T Consensus 537 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 566 (968)
T PLN00113 537 GQIPASFSEMPVLSQLDLSQNQLSGEIPKN 566 (968)
T ss_pred ccCChhHhCcccCCEEECCCCcccccCChh
Confidence 999999999999999999999999999975
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=6.6e-37 Score=313.39 Aligned_cols=364 Identities=28% Similarity=0.306 Sum_probs=196.0
Q ss_pred CEEeCCCccCCCccchhhhhccCCCCcEEEccCCcCCCCCCccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcc
Q 003488 110 KELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLE 189 (816)
Q Consensus 110 ~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 189 (816)
+.|++++|.+...... .+.++ ++|+++++..|.++ .+|...+...+|+.|+|.+|.|+....+.+..++.|+.|||+
T Consensus 81 ~~LdlsnNkl~~id~~-~f~nl-~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFE-FFYNL-PNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred eeeeccccccccCcHH-HHhcC-Ccceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 3455555555444443 44555 55555555555554 344444444456666666666655555555556666666666
Q ss_pred CCcCCCCCCccccCCCCccEEEcccCCCCcCCcccCCCCCCCcEEECcCCCCCcccchhhhhCCCCccEEEccCCcCCcc
Q 003488 190 QNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGS 269 (816)
Q Consensus 190 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 269 (816)
.|.|+...-..|..-.++++|+|++|+++..-...|..+.+|..|.|++|+++ .+|...|+.+++|+.|+|..|++.-.
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeee
Confidence 66655444444555555666666666665555555555556666666666665 55555555566666666665555433
Q ss_pred CchhhhcCCCCCEEEcccCCCcCccccccccCCCccceeeCCCccccccccCCCCCCCcCccEEeccCCCCCCCC-cccc
Q 003488 270 IPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFP-DFLR 348 (816)
Q Consensus 270 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~lp-~~l~ 348 (816)
-.-+|..+++|+.|.+..|.+. .+..+.|..+.++++|+|+.|++ .++. .|+.
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l-------------------------~~vn~g~lf 290 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRL-------------------------QAVNEGWLF 290 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchh-------------------------hhhhccccc
Confidence 2334555555555555555554 33334444444444444444433 3222 3556
Q ss_pred CCcccceeecccccccCCCCchhhccCCCccceEEcCCCcCCCCCCCCCCCCCEEecCCCcCCCcCCCCCCCccEEEccC
Q 003488 349 SQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISN 428 (816)
Q Consensus 349 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~ 428 (816)
.++.|+.|++++|.|..+-++... .+++|+.|+|++
T Consensus 291 gLt~L~~L~lS~NaI~rih~d~Ws--ftqkL~~LdLs~------------------------------------------ 326 (873)
T KOG4194|consen 291 GLTSLEQLDLSYNAIQRIHIDSWS--FTQKLKELDLSS------------------------------------------ 326 (873)
T ss_pred ccchhhhhccchhhhheeecchhh--hcccceeEeccc------------------------------------------
Confidence 666666666666666655444433 333444444444
Q ss_pred CcccccccccccCCCCCCeEeCCCCCCCCCCCchhhccCCCCEEEccCCcCccCCCc---cccCCCCccEEEccCCcccC
Q 003488 429 NKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQ---ISANGSGLVNLILNDNQFEG 505 (816)
Q Consensus 429 n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~ 505 (816)
|+++...+.+|..+..|++|+|++|.+.......|..+++|+.|||++|.++..+.+ .|.++++|+.|++.+|++..
T Consensus 327 N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~ 406 (873)
T KOG4194|consen 327 NRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKS 406 (873)
T ss_pred cccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeee
Confidence 333434444455555555555555555544444555555555555555555543322 34555666666666666664
Q ss_pred CCCcccCCCCCCcEEECcCCcCCCCCcccccCCCCCcEEEccC
Q 003488 506 PLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRS 548 (816)
Q Consensus 506 ~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 548 (816)
+...+|.++.+|++|||.+|.|..+-|++|..+ .|++|.+..
T Consensus 407 I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 407 IPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred cchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 444556666666666666666665666666555 555555543
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=7.5e-37 Score=313.01 Aligned_cols=379 Identities=24% Similarity=0.261 Sum_probs=291.1
Q ss_pred CCCEEEccCCCCCCCchhhhcCCCCCCEEEccCCcCCCCCCccccCCCCccEEEcccCCCCcCCcccCCCCCCCcEEECc
Q 003488 158 QLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLS 237 (816)
Q Consensus 158 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 237 (816)
.-+.||+++|.++...+..|.++++|+++++..|.++ .+|...+...+|+.|+|.+|.+..+-.+.++.++.|+.|||+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 4456888888888877788888888888888888876 667655666678888888888887777778888888888888
Q ss_pred CCCCCcccchhhhhCCCCccEEEccCCcCCccCchhhhcCCCCCEEEcccCCCcCccccccccCCCccceeeCCCccccc
Q 003488 238 GNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSV 317 (816)
Q Consensus 238 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~ 317 (816)
.|.|+ .+|...|..-.++++|+|++|.|+..-...|..+.+|..|.|+.|+++ .+|...|.++++|+.|+|..|+|..
T Consensus 158 rN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 158 RNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred hchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceee
Confidence 88887 777766665677888888888888777777888888888888888888 7777888888888888888887754
Q ss_pred cccCCCCCCCcCccEEeccCCCCCCCCc-cccCCcccceeecccccccCCCCchhhccCCCccceEEcCCCcCCCCCCCC
Q 003488 318 NTKLDANSTFPKLLKLGLSACNISEFPD-FLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVP 396 (816)
Q Consensus 318 ~~~~~~~~~~~~L~~L~l~~~~l~~lp~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 396 (816)
.. .-.+..+++|+.|.+..|.+..+.+ .|..+.++++|+|+.|++...-..|+. ++++
T Consensus 236 ve-~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf--gLt~------------------ 294 (873)
T KOG4194|consen 236 VE-GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF--GLTS------------------ 294 (873)
T ss_pred eh-hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc--ccch------------------
Confidence 32 2233445555555555555554432 344555555555555555544444443 3333
Q ss_pred CCCCCEEecCCCcCCCcCCCCCCCccEEEccCCcccccccccccCCCCCCeEeCCCCCCCCCCCchhhccCCCCEEEccC
Q 003488 397 LKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHL 476 (816)
Q Consensus 397 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~ 476 (816)
|+.|++++|.|....++++..+++|+.|+|++|+++..-++.|..+..|++|+|++
T Consensus 295 ------------------------L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~ 350 (873)
T KOG4194|consen 295 ------------------------LEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSH 350 (873)
T ss_pred ------------------------hhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccc
Confidence 34455555666667778888899999999999999988888899999999999999
Q ss_pred CcCccCCCccccCCCCccEEEccCCcccCCCCc---ccCCCCCCcEEECcCCcCCCCCcccccCCCCCcEEEccCccccc
Q 003488 477 NSFNGSIPQISANGSGLVNLILNDNQFEGPLPQ---SLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYG 553 (816)
Q Consensus 477 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 553 (816)
|++...-..+|..+.+|+.|||++|.++..+.+ .|.++++|+.|++.+|++..+.-.+|.++++|++|+|.+|.+..
T Consensus 351 Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 351 NSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIAS 430 (873)
T ss_pred cchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCccee
Confidence 999988788899999999999999999866554 58899999999999999998888899999999999999999998
Q ss_pred ccCCCcccccCCCCceeeCCCCcccccCchHHHh
Q 003488 554 LIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQ 587 (816)
Q Consensus 554 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~ 587 (816)
+.+ .++..+ .|+.|.+..-.|-+.....|+.
T Consensus 431 Iq~--nAFe~m-~Lk~Lv~nSssflCDCql~Wl~ 461 (873)
T KOG4194|consen 431 IQP--NAFEPM-ELKELVMNSSSFLCDCQLKWLA 461 (873)
T ss_pred ecc--cccccc-hhhhhhhcccceEEeccHHHHH
Confidence 865 456666 7888888777666555545543
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3.3e-39 Score=316.39 Aligned_cols=474 Identities=27% Similarity=0.368 Sum_probs=292.4
Q ss_pred CCCcEEEccCCcCCCCCCccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEccCCcCCCCCCccccCCCCccEEEc
Q 003488 133 SSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDL 212 (816)
Q Consensus 133 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 212 (816)
..++.+.+++|.+.. +...+.++..|++|++++|++. ..|.+++.+..++.++.++|++. .+|..+..+..|..++.
T Consensus 45 v~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC 121 (565)
T ss_pred cchhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence 456777777777653 3345666777777777777776 45666777777777777777765 56666777777777777
Q ss_pred ccCCCCcCCcccCCCCCCCcEEECcCCCCCcccchhhhhCCCCccEEEccCCcCCccCchhhhcCCCCCEEEcccCCCcC
Q 003488 213 SWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSG 292 (816)
Q Consensus 213 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 292 (816)
++|.+. ..|+.++.+..|+.++..+|++. ..|..++. +.+|..+++.+|+++...|..+. ++.|+++|...|.+.
T Consensus 122 s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~-~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~- 196 (565)
T KOG0472|consen 122 SSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVN-LSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE- 196 (565)
T ss_pred ccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHH-HHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-
Confidence 777766 45556666667777777777776 66665555 66666666666666643333333 566666666655554
Q ss_pred ccccccccCCCccceeeCCCccccccccCCCCCCCcCccEEeccCCCCCCCCccccCCcccceeecccccccCCCCchhh
Q 003488 293 HIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFW 372 (816)
Q Consensus 293 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 372 (816)
.+| ..++.+.+|+.|++. .|++..+| .|..|..|+++.++.|+|. .+|....
T Consensus 197 tlP-~~lg~l~~L~~LyL~-------------------------~Nki~~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~ 248 (565)
T KOG0472|consen 197 TLP-PELGGLESLELLYLR-------------------------RNKIRFLP-EFPGCSLLKELHVGENQIE-MLPAEHL 248 (565)
T ss_pred cCC-hhhcchhhhHHHHhh-------------------------hcccccCC-CCCccHHHHHHHhcccHHH-hhHHHHh
Confidence 343 233444444444443 34445555 4667777777777777776 3333322
Q ss_pred ccCCCccceEEcCCCcCCCCCCC--CCCCCCEEecCCCcCCCcCCCCCCCccEEEccCCcccccccccccCCCCCCeEeC
Q 003488 373 DIGKDTLYNLNLSDNFLTDVEQV--PLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDL 450 (816)
Q Consensus 373 ~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 450 (816)
. .++++..||+.+|+++.++.. -+++|+ .||+++|.++ ..|..++++ .|+.|-+
T Consensus 249 ~-~L~~l~vLDLRdNklke~Pde~clLrsL~---------------------rLDlSNN~is-~Lp~sLgnl-hL~~L~l 304 (565)
T KOG0472|consen 249 K-HLNSLLVLDLRDNKLKEVPDEICLLRSLE---------------------RLDLSNNDIS-SLPYSLGNL-HLKFLAL 304 (565)
T ss_pred c-ccccceeeeccccccccCchHHHHhhhhh---------------------hhcccCCccc-cCCcccccc-eeeehhh
Confidence 1 445555566665555554443 223333 3333334443 344556666 6666677
Q ss_pred CCCCCCCCCCchhhccC---CCCEE-------EccCCcC----ccC-CCcc---ccCCCCccEEEccCCcccCCCCcccC
Q 003488 451 SNNSLSGPIPECLVDSI---TLIWL-------DLHLNSF----NGS-IPQI---SANGSGLVNLILNDNQFEGPLPQSLA 512 (816)
Q Consensus 451 s~n~l~~~~~~~~~~~~---~L~~L-------~l~~n~l----~~~-~~~~---~~~l~~L~~L~L~~n~l~~~~~~~l~ 512 (816)
.+|++.. +-..+..+. -|++| .++...= ... .+.. .....+.+.|++++-+++ .+|....
T Consensus 305 eGNPlrT-iRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVf 382 (565)
T KOG0472|consen 305 EGNPLRT-IRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVF 382 (565)
T ss_pred cCCchHH-HHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHH
Confidence 7776541 111111110 01111 0110000 000 0011 112345677777777777 4555433
Q ss_pred CCC---CCcEEECcCCcCCCCCcccccCCCCCcEEEccCcccccccCCCcccccCCCCceeeCCCCcccccCchHHHhhh
Q 003488 513 NCS---RLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNL 589 (816)
Q Consensus 513 ~l~---~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l 589 (816)
.-. -....+++.|++.. +|..+..+..+.+.-+..|+..+.+| ..++.+++|..|+|++|.+. .+|.+++
T Consensus 383 ea~~~~~Vt~VnfskNqL~e-lPk~L~~lkelvT~l~lsnn~isfv~--~~l~~l~kLt~L~L~NN~Ln-~LP~e~~--- 455 (565)
T KOG0472|consen 383 EAAKSEIVTSVNFSKNQLCE-LPKRLVELKELVTDLVLSNNKISFVP--LELSQLQKLTFLDLSNNLLN-DLPEEMG--- 455 (565)
T ss_pred HHhhhcceEEEecccchHhh-hhhhhHHHHHHHHHHHhhcCccccch--HHHHhhhcceeeecccchhh-hcchhhh---
Confidence 222 36778888888764 56666655555544444444444432 45677888888888888775 4554442
Q ss_pred hhhhccCCCcccceeeccccccceeeEEEeecceecccccccceEEEccCCcccccCchhhhCCCCCcEEEccCCcCccc
Q 003488 590 KAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGR 669 (816)
Q Consensus 590 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 669 (816)
.+..|+.||+|+|+|. .+|+.+..+..++.+-.++|++...
T Consensus 456 --------------------------------------~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~v 496 (565)
T KOG0472|consen 456 --------------------------------------SLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSV 496 (565)
T ss_pred --------------------------------------hhhhhheecccccccc-cchHHHhhHHHHHHHHhcccccccc
Confidence 4566889999999998 7899988888888888888999877
Q ss_pred CCccccccCCCCeEeCCCCcccccCccccCCcCcCCeEeCccCccc
Q 003488 670 IPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLE 715 (816)
Q Consensus 670 ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 715 (816)
.|+.+++|.+|.+|||.+|.+. .+|+.+++|++|+.|++++|+|+
T Consensus 497 d~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 497 DPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 7777999999999999999998 67889999999999999999998
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.7e-38 Score=311.38 Aligned_cols=477 Identities=27% Similarity=0.374 Sum_probs=270.3
Q ss_pred CCCEEeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCchhhhcCCCCCEEeCCCCCCccccCCcHHHHhhcCCCCC
Q 003488 31 YLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLK 110 (816)
Q Consensus 31 ~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~ 110 (816)
-++.|.+++|.+.. +.+.+.++..|.+|++++|... ..|++++.+.+++.++.++|.+..++. .+..+.+|+
T Consensus 46 ~l~~lils~N~l~~--l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~lp~-----~i~s~~~l~ 117 (565)
T KOG0472|consen 46 DLQKLILSHNDLEV--LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSELPE-----QIGSLISLV 117 (565)
T ss_pred chhhhhhccCchhh--ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhhccH-----HHhhhhhhh
Confidence 45666677766654 4455667777777777777766 566667777777777777766655443 255666677
Q ss_pred EEeCCCccCCCccchhhhhccCCCCcEEEccCCcCCCCCCccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEccC
Q 003488 111 ELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQ 190 (816)
Q Consensus 111 ~L~l~~~~~~~~~~~~~~~~l~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 190 (816)
.+++++|.+....+ .+..+ ..++.++..+|++. ..|.++..+.++..+++.+|.+....|..+. ++.|++|+...
T Consensus 118 ~l~~s~n~~~el~~--~i~~~-~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~ 192 (565)
T KOG0472|consen 118 KLDCSSNELKELPD--SIGRL-LDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNS 192 (565)
T ss_pred hhhccccceeecCc--hHHHH-hhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccch
Confidence 77777776655443 35555 56777777777766 3566667777777777777777755554444 77777777777
Q ss_pred CcCCCCCCccccCCCCccEEEcccCCCCcCCcccCCCCCCCcEEECcCCCCCcccchhhhhCCCCccEEEccCCcCCccC
Q 003488 191 NNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSI 270 (816)
Q Consensus 191 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 270 (816)
|.+. .+|..++.+.+|..|++..|.+. ..| .|.+|..|++++++.|++. .+|...+..++++..||++.|+++ ..
T Consensus 193 N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~ 267 (565)
T KOG0472|consen 193 NLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EV 267 (565)
T ss_pred hhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cC
Confidence 7665 66667777777777777777776 455 5777777777777777776 677777766777777777777776 56
Q ss_pred chhhhcCCCCCEEEcccCCCcCccccccccCCCccceeeCCCccccccccCCCC----CCCcCccE----EeccCCCCC-
Q 003488 271 PSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDAN----STFPKLLK----LGLSACNIS- 341 (816)
Q Consensus 271 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~----~~~~~L~~----L~l~~~~l~- 341 (816)
|+.+.-+.+|++||+++|.++ .+| ..++++ .|+.|.+.+|.+......-.. ..+..|+. =.++...-+
T Consensus 268 Pde~clLrsL~rLDlSNN~is-~Lp-~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~ 344 (565)
T KOG0472|consen 268 PDEICLLRSLERLDLSNNDIS-SLP-YSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGT 344 (565)
T ss_pred chHHHHhhhhhhhcccCCccc-cCC-cccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccc
Confidence 777777777777777777776 333 346666 677777777755321100000 00111111 011111100
Q ss_pred ----CCCc----cccCCcccceeecccccccCCCCchhhccCCCccceEEcCCCcCCCCCCC--CCCCCCEEecCCCcCC
Q 003488 342 ----EFPD----FLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQV--PLKNLRFLDLRSNLLQ 411 (816)
Q Consensus 342 ----~lp~----~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~ 411 (816)
..|. ......+.+.|+++.-+++.+....|......-+..++++.|.+..++.. .++.+
T Consensus 345 e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkel----------- 413 (565)
T KOG0472|consen 345 ETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKEL----------- 413 (565)
T ss_pred cccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHH-----------
Confidence 1111 12234567788888888875444433321222245566666555444321 00000
Q ss_pred CcCCCCCCCccEEEccCCcccccccccccCCCCCCeEeCCCCCCCCCCCchhhccCCCCEEEccCCcCccCCCccccCCC
Q 003488 412 GSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGS 491 (816)
Q Consensus 412 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 491 (816)
++.+.+++|.+ +.+|..++.+++|..|++++|.+. .+|..++.+..|+.|+++.|+|. ..|..+..+.
T Consensus 414 ---------vT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq 481 (565)
T KOG0472|consen 414 ---------VTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQ 481 (565)
T ss_pred ---------HHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHH
Confidence 11122222222 244455555555555555555554 45555555555555555555554 3444444444
Q ss_pred CccEEEccCCcccCCCCcccCCCCCCcEEECcCCcCCCCCcccccCCCCCcEEEccCcccc
Q 003488 492 GLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFY 552 (816)
Q Consensus 492 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 552 (816)
.++.+..++|++....|..+.++.+|..||+.+|.+. .+|..+++|++|++|.+.+|+|.
T Consensus 482 ~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 482 TLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 4555555555555433344555555555555555554 23444455554444444444443
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=1e-35 Score=321.20 Aligned_cols=480 Identities=26% Similarity=0.324 Sum_probs=316.6
Q ss_pred EEccCCcCCCCCCccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEccCCcCCCCCCccccCCCCccEEEcccCCC
Q 003488 138 LHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQL 217 (816)
Q Consensus 138 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 217 (816)
+|.+.+.+. .+|..+.....++.|+++.|.+....-+...+.-+|+.|++++|++. ..|..+..+.+|+.|+++.|.+
T Consensus 3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i 80 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI 80 (1081)
T ss_pred cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH
Confidence 344555444 45555554445666666666554332333444444666666666554 5555555566666666666655
Q ss_pred CcCCcccCCCCCCCcEEECcCCCCCcccchhhhhCCCCccEEEccCCcCCccCchhhhcCCCCCEEEcccCCCcCccccc
Q 003488 218 TGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELC 297 (816)
Q Consensus 218 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 297 (816)
. ..|....++.+|+++.|.+|.+. ..|..+.. +.+|+.|+++.|.+. .+|..+..+..+..+..++|.....
T Consensus 81 ~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~-lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~---- 152 (1081)
T KOG0618|consen 81 R-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISE-LKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR---- 152 (1081)
T ss_pred h-hCchhhhhhhcchhheeccchhh-cCchhHHh-hhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----
Confidence 5 34455555566666666666554 55554433 555555666655554 4555555555555555555511101
Q ss_pred cccCCCccceeeCCCccccccccCCCCCCCcCccEEeccCCCCC-CCCccccCCcccceeecccccccCCCCchhhccCC
Q 003488 298 MFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNIS-EFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGK 376 (816)
Q Consensus 298 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~-~lp~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 376 (816)
++.. .++.+++..+.+. .++.....++. .+|+.+|.+. ... +. .+
T Consensus 153 -lg~~--------------------------~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d--ls--~~ 198 (1081)
T KOG0618|consen 153 -LGQT--------------------------SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD--LS--NL 198 (1081)
T ss_pred -hccc--------------------------cchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh--hh--hc
Confidence 1111 1333344443332 23332333332 4677777665 111 11 44
Q ss_pred CccceEEcCCCcCCCCCCCCCCCCCEEecCCCcCCCcCCC-CCCCccEEEccCCcccccccccccCCCCCCeEeCCCCCC
Q 003488 377 DTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMV-LPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSL 455 (816)
Q Consensus 377 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l 455 (816)
..++.+....|++..+... -++++.|+.++|.+...... .+..+++++++.|++++. |.+++.|.+|+.++..+|++
T Consensus 199 ~~l~~l~c~rn~ls~l~~~-g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~l-p~wi~~~~nle~l~~n~N~l 276 (1081)
T KOG0618|consen 199 ANLEVLHCERNQLSELEIS-GPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNL-PEWIGACANLEALNANHNRL 276 (1081)
T ss_pred cchhhhhhhhcccceEEec-CcchheeeeccCcceeeccccccccceeeecchhhhhcc-hHHHHhcccceEecccchhH
Confidence 5666666666666654432 36778888888887743333 567788999999998854 58899999999999999999
Q ss_pred CCCCCchhhccCCCCEEEccCCcCccCCCccccCCCCccEEEccCCcccCCCCcc-cCCCCC-CcEEECcCCcCCCCCcc
Q 003488 456 SGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQS-LANCSR-LQVLNVANNRIDDTFPH 533 (816)
Q Consensus 456 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~-L~~L~Ls~N~l~~~~~~ 533 (816)
+ .+|..+....+|+.|.+.+|.+. .+|....+..+|++|+|..|++. .+|+. +.-... |+.|+.+.|++......
T Consensus 277 ~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~ 353 (1081)
T KOG0618|consen 277 V-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSY 353 (1081)
T ss_pred H-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccc
Confidence 6 78888888889999999999998 56667777899999999999998 45543 344433 78888888888754433
Q ss_pred cccCCCCCcEEEccCcccccccCCCcccccCCCCceeeCCCCcccccCchHHHhhhhhhhccCCCcccceeeccccccce
Q 003488 534 WLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYY 613 (816)
Q Consensus 534 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 613 (816)
.=..++.|+.|++.+|.+++.. +..+..++.|++|+|++|++. .+|+..+.+
T Consensus 354 ~e~~~~~Lq~LylanN~Ltd~c--~p~l~~~~hLKVLhLsyNrL~-~fpas~~~k------------------------- 405 (1081)
T KOG0618|consen 354 EENNHAALQELYLANNHLTDSC--FPVLVNFKHLKVLHLSYNRLN-SFPASKLRK------------------------- 405 (1081)
T ss_pred cchhhHHHHHHHHhcCcccccc--hhhhccccceeeeeecccccc-cCCHHHHhc-------------------------
Confidence 3335778999999999998752 345678889999999999986 677776554
Q ss_pred eeEEEeecceecccccccceEEEccCCcccccCchhhhCCCCCcEEEccCCcCcccCCccccccCCCCeEeCCCCccccc
Q 003488 614 SAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQ 693 (816)
Q Consensus 614 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 693 (816)
+..|+.|+||+|+++ .+|.++.++..|++|....|++. ..| .+..+++|+.+|+|.|+|+..
T Consensus 406 ---------------le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~ 467 (1081)
T KOG0618|consen 406 ---------------LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEV 467 (1081)
T ss_pred ---------------hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhh
Confidence 444567889999998 67888999999999999999987 666 788899999999999998854
Q ss_pred C-ccccCCcCcCCeEeCccCc
Q 003488 694 I-PTQLTSLNFLSKLNLSHNQ 713 (816)
Q Consensus 694 ~-p~~l~~l~~L~~L~ls~N~ 713 (816)
. |..... ++|++||+++|.
T Consensus 468 ~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 468 TLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred hhhhhCCC-cccceeeccCCc
Confidence 3 433333 789999999884
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=5.5e-35 Score=315.58 Aligned_cols=439 Identities=28% Similarity=0.334 Sum_probs=211.0
Q ss_pred CCcEEEccCCcCCCCCCccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEccCCcCCCCCCccccCCCCccEEEcc
Q 003488 134 SLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLS 213 (816)
Q Consensus 134 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 213 (816)
.|+.|+++.|.+. ..|.+..++.+|++|.|..|.+. ..|..+..+++|++|++++|.+. .+|..+..+..++.+..+
T Consensus 69 ~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s 145 (1081)
T KOG0618|consen 69 HLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAAS 145 (1081)
T ss_pred HHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhh
Confidence 3344444433333 23344444445555555544444 34444555555555555555443 444444445555555555
Q ss_pred cCCCCcCCcccCCCCCCCcEEECcCCCCCcccchhhhhCCCCccEEEccCCcCCccCchhhhcCCCCCEEEcccCCCcCc
Q 003488 214 WNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGH 293 (816)
Q Consensus 214 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 293 (816)
+|..... ++... ++.+++..|.+.+.++..... +.. .|++++|.+. ...+..+.+|+.+....|.+. .
T Consensus 146 ~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~-l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls-~ 213 (1081)
T KOG0618|consen 146 NNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYN-LTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLS-E 213 (1081)
T ss_pred cchhhhh----hcccc-chhhhhhhhhcccchhcchhh-hhe--eeecccchhh---hhhhhhccchhhhhhhhcccc-e
Confidence 5511111 11111 444455555444444433322 222 3555555554 123445556666666666555 2
Q ss_pred cccccccCCCccceeeCCCccccccccCCCCCCCcCccEEeccCCCCCCCCccccCCcccceeecccccccCCCCchhhc
Q 003488 294 IELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWD 373 (816)
Q Consensus 294 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 373 (816)
+. -.-++|+.|+.++|.+. .........+|+.++++.+++..+|+|+..+.+|+.+++.+|.++ .+|..+.
T Consensus 214 l~----~~g~~l~~L~a~~n~l~---~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~- 284 (1081)
T KOG0618|consen 214 LE----ISGPSLTALYADHNPLT---TLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-ALPLRIS- 284 (1081)
T ss_pred EE----ecCcchheeeeccCcce---eeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHH-hhHHHHh-
Confidence 21 23356666666666543 112222344566666666666677777777777777777776664 3333332
Q ss_pred cCCCccceEEcCCCcCCCCCCCCCCCCCEEecCCCcCCCcCCCCCCCccEEEccCCcccccccccccCCCCCCeEeCCCC
Q 003488 374 IGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNN 453 (816)
Q Consensus 374 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n 453 (816)
...+|+.+.+..|.+.- +|......++|++|++..|
T Consensus 285 -~~~~L~~l~~~~nel~y-------------------------------------------ip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 285 -RITSLVSLSAAYNELEY-------------------------------------------IPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred -hhhhHHHHHhhhhhhhh-------------------------------------------CCCcccccceeeeeeehhc
Confidence 33344444444433332 2333333444555555555
Q ss_pred CCCCCCCchhhc-cC-CCCEEEccCCcCccCCCccccCCCCccEEEccCCcccCCCCcccCCCCCCcEEECcCCcCCCCC
Q 003488 454 SLSGPIPECLVD-SI-TLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTF 531 (816)
Q Consensus 454 ~l~~~~~~~~~~-~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 531 (816)
.+. .+|..+.. .. .|..++.+.|++....-.. =...+.|+.|.+.+|.+++..
T Consensus 321 ~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~------------------------e~~~~~Lq~LylanN~Ltd~c 375 (1081)
T KOG0618|consen 321 NLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYE------------------------ENNHAALQELYLANNHLTDSC 375 (1081)
T ss_pred ccc-ccchHHHhhhhHHHHHHhhhhcccccccccc------------------------chhhHHHHHHHHhcCcccccc
Confidence 544 23322111 11 1333444444443211001 112234444444444444444
Q ss_pred cccccCCCCCcEEEccCcccccccCCCcccccCCCCceeeCCCCcccccCchHHHhhhhhhhccCCCcccceeecccccc
Q 003488 532 PHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGR 611 (816)
Q Consensus 532 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 611 (816)
-+.+.+.++|++|+|++|++.... ...+.+++.|+.|+||+|+++ .+|..+.
T Consensus 376 ~p~l~~~~hLKVLhLsyNrL~~fp--as~~~kle~LeeL~LSGNkL~-~Lp~tva------------------------- 427 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYNRLNSFP--ASKLRKLEELEELNLSGNKLT-TLPDTVA------------------------- 427 (1081)
T ss_pred hhhhccccceeeeeecccccccCC--HHHHhchHHhHHHhcccchhh-hhhHHHH-------------------------
Confidence 444444444555555554444331 123445555555555555555 2332221
Q ss_pred ceeeEEEeecceecccccccceEEEccCCcccccCchhhhCCCCCcEEEccCCcCccc-CCccccccCCCCeEeCCCCcc
Q 003488 612 YYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGR-IPSSLRNLTVLESLDLSSNRL 690 (816)
Q Consensus 612 ~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~L~Ls~N~l 690 (816)
.+..|++|...+|++. ..| ++..++.|+.+|+|.|+++.. +|.... -++|++|||++|.-
T Consensus 428 ----------------~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 428 ----------------NLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTR 488 (1081)
T ss_pred ----------------hhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCcc
Confidence 2344445555566665 456 677777777777777777543 333332 26788888888875
Q ss_pred cccCccccCCcCcCCeEeCccC
Q 003488 691 VGQIPTQLTSLNFLSKLNLSHN 712 (816)
Q Consensus 691 ~~~~p~~l~~l~~L~~L~ls~N 712 (816)
....-..|..+.++..+++.-|
T Consensus 489 l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 489 LVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred cccchhhhHHhhhhhheecccC
Confidence 4444455566666666666555
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.5e-32 Score=283.08 Aligned_cols=370 Identities=29% Similarity=0.416 Sum_probs=275.7
Q ss_pred CCCCCEEeCCCccCCCccchhhhhccCCCCcEEEccCCcCCCCCCccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCE
Q 003488 106 LTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYY 185 (816)
Q Consensus 106 l~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 185 (816)
++-.+-.|+++|++++...+..+... ++++.|.|...++. .+|..++.+.+|++|.+++|++. .+...+..++.|+.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qM-t~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQM-TQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRS 82 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHh-hheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHH
Confidence 45566777888888866555467777 78888888887776 57888999999999999999887 44567788899999
Q ss_pred EEccCCcCC-CCCCccccCCCCccEEEcccCCCCcCCcccCCCCCCCcEEECcCCCCCcccchhhhhCCCCccEEEccCC
Q 003488 186 LNLEQNNLV-GGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDN 264 (816)
Q Consensus 186 L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 264 (816)
+.+.+|++. .-+|..+..+..|+.||||+|++. ..|..+..-+++-+|+|++|+|. .||..+|-++..|-.||+++|
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccc
Confidence 999999885 346777888999999999999998 68888999999999999999998 999999998999999999999
Q ss_pred cCCccCchhhhcCCCCCEEEcccCCCcCccccccccCCCccceeeCCCccccccccCCCCCCCcCccEEeccCCCCCCCC
Q 003488 265 RFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFP 344 (816)
Q Consensus 265 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~lp 344 (816)
++. .+|+.+..+.+|++|+|++|.+. ......+..+++|+.|.+++.+-+. ..+|
T Consensus 161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl-----------------------~N~P 215 (1255)
T KOG0444|consen 161 RLE-MLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTL-----------------------DNIP 215 (1255)
T ss_pred hhh-hcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccchh-----------------------hcCC
Confidence 997 78888999999999999999876 3333445556666666666654322 2455
Q ss_pred ccccCCcccceeecccccccCCCCchhhccCCCccceEEcCCCcCCCCCCC--CCCCCCEEecCCCcCCCcCCCCCCCcc
Q 003488 345 DFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQV--PLKNLRFLDLRSNLLQGSVMVLPPRLI 422 (816)
Q Consensus 345 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~L~ 422 (816)
..+..+.+|..+|++.|.+. ..|+.+. .+++|+.|+|++|+++.+... ...+|++|+++.|++
T Consensus 216 tsld~l~NL~dvDlS~N~Lp-~vPecly--~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQL------------ 280 (1255)
T KOG0444|consen 216 TSLDDLHNLRDVDLSENNLP-IVPECLY--KLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQL------------ 280 (1255)
T ss_pred CchhhhhhhhhccccccCCC-cchHHHh--hhhhhheeccCcCceeeeeccHHHHhhhhhhccccchh------------
Confidence 55666666666666666665 3444444 555666666666665554332 334444444444443
Q ss_pred EEEccCCcccccccccccCCCCCCeEeCCCCCCC-CCCCchhhccCCCCEEEccCCcCccCCCccccCCCCccEEEccCC
Q 003488 423 FFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLS-GPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDN 501 (816)
Q Consensus 423 ~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 501 (816)
+ .+|.++|.++.|+.|.+.+|+++ .-+|..++.+.+|+.+..++|.+. ..|+.++.|..|+.|.|+.|
T Consensus 281 ---------t-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~N 349 (1255)
T KOG0444|consen 281 ---------T-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHN 349 (1255)
T ss_pred ---------c-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccc
Confidence 3 56777888888888888888775 246777777778888888877776 67777778888888888888
Q ss_pred cccCCCCcccCCCCCCcEEECcCCcCCCCCc
Q 003488 502 QFEGPLPQSLANCSRLQVLNVANNRIDDTFP 532 (816)
Q Consensus 502 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~ 532 (816)
++. .+|.++.-++.|++||+.+|.-.-..|
T Consensus 350 rLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 350 RLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred cee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 777 677777778888888888776443333
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=4.1e-32 Score=279.94 Aligned_cols=390 Identities=29% Similarity=0.404 Sum_probs=261.4
Q ss_pred cccCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCchhhhcCCCCCEEeCCCCCCccccCCcHHHHhhc
Q 003488 26 LFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIEN 105 (816)
Q Consensus 26 ~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~ 105 (816)
.+-+|..|-.|+++|.+++..+|.....|+.++.|.|....+. .+|..++.+.+|++|.+++|++..+... +..
T Consensus 3 tgVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGE-----Ls~ 76 (1255)
T KOG0444|consen 3 TGVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGE-----LSD 76 (1255)
T ss_pred ccccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhh-----hcc
Confidence 3557778888999999987778888999999999999998887 7899999999999999999987776542 344
Q ss_pred CCCCCEEeCCCccCCCccchhhhhccCCCCcEEEccCCcCC-CCCCccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCC
Q 003488 106 LTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLI-GPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLY 184 (816)
Q Consensus 106 l~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 184 (816)
++. |+.+.+..|++. .-+|..+.++..|+.||||+|+++ ..|..+..-+++-
T Consensus 77 Lp~--------------------------LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~i 129 (1255)
T KOG0444|consen 77 LPR--------------------------LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSI 129 (1255)
T ss_pred chh--------------------------hHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcE
Confidence 444 444444444443 235666667777777777777776 5566666667777
Q ss_pred EEEccCCcCCCCCCccccCCCCccEEEcccCCCCcCCcccCCCCCCCcEEECcCCCCCcccchhhhhCCCCccEEEccCC
Q 003488 185 YLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDN 264 (816)
Q Consensus 185 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 264 (816)
+|+|++|+|..+....|.+++.|-+||||+|++. .+|+.+..+..|++|+|++|.+.-.--..+ ..+++|+.|.+++.
T Consensus 130 VLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQL-PsmtsL~vLhms~T 207 (1255)
T KOG0444|consen 130 VLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQL-PSMTSLSVLHMSNT 207 (1255)
T ss_pred EEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcC-ccchhhhhhhcccc
Confidence 7777777776444445667777777777777776 455566677777777777776541111111 11555666666665
Q ss_pred cCC-ccCchhhhcCCCCCEEEcccCCCcCccccccccCCCccceeeCCCccccccccCCCCCCCcCccEEeccCCCCCCC
Q 003488 265 RFT-GSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEF 343 (816)
Q Consensus 265 ~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l 343 (816)
+-+ ..+|.++..+.+|..+|++.|.+. .+| ..+-++++|+.|+|++|+|+.... ......+|++|+++.|+++.+
T Consensus 208 qRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vP-ecly~l~~LrrLNLS~N~iteL~~--~~~~W~~lEtLNlSrNQLt~L 283 (1255)
T KOG0444|consen 208 QRTLDNIPTSLDDLHNLRDVDLSENNLP-IVP-ECLYKLRNLRRLNLSGNKITELNM--TEGEWENLETLNLSRNQLTVL 283 (1255)
T ss_pred cchhhcCCCchhhhhhhhhccccccCCC-cch-HHHhhhhhhheeccCcCceeeeec--cHHHHhhhhhhccccchhccc
Confidence 533 356666677777777777777665 444 345556666666666665432111 011223445555555555555
Q ss_pred CccccCCcccceeecccccccCCCCchhhccCCCccceEEcCCCcCCCCCCCCCCCCCEEecCCCcCCCcCCCCCCCccE
Q 003488 344 PDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIF 423 (816)
Q Consensus 344 p~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~ 423 (816)
|+.+..+++|+.|.+.+|+++-
T Consensus 284 P~avcKL~kL~kLy~n~NkL~F---------------------------------------------------------- 305 (1255)
T KOG0444|consen 284 PDAVCKLTKLTKLYANNNKLTF---------------------------------------------------------- 305 (1255)
T ss_pred hHHHhhhHHHHHHHhccCcccc----------------------------------------------------------
Confidence 5555555555555544444320
Q ss_pred EEccCCcccccccccccCCCCCCeEeCCCCCCCCCCCchhhccCCCCEEEccCCcCccCCCccccCCCCccEEEccCCcc
Q 003488 424 FSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQF 503 (816)
Q Consensus 424 L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 503 (816)
.-+|..++.+..|+.+..++|.+. .+|+.++.|..|+.|.|++|++. .+|+++.-++.|+.|++..|.=
T Consensus 306 ---------eGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 306 ---------EGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred ---------cCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence 135677888889999999999987 89999999999999999999997 6899999999999999999975
Q ss_pred cCCCCcccCCCCCCcEEECc
Q 003488 504 EGPLPQSLANCSRLQVLNVA 523 (816)
Q Consensus 504 ~~~~~~~l~~l~~L~~L~Ls 523 (816)
.-..|..-..-++|+.-++.
T Consensus 375 LVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 375 LVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred ccCCCCcchhhhcceeeecc
Confidence 53434322222566655554
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=1.4e-25 Score=220.70 Aligned_cols=290 Identities=25% Similarity=0.252 Sum_probs=188.3
Q ss_pred CCCEEEccCCcCCCCCCccccCCCCccEEEcccCCCCcCCcccCCCCCCCcEEECcC-CCCCcccchhhhhCCCCccEEE
Q 003488 182 QLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSG-NSLNGTIPSWLFTVLPYLEVIH 260 (816)
Q Consensus 182 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~ 260 (816)
.-..++|..|+|+...+.+|..+++|+.|||++|.|+.+.|++|.++++|.+|-+.+ |+|+ .+|...|.++..|+.|.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence 456777777887777777788888888888888888877888888888777766655 7776 78888888888888888
Q ss_pred ccCCcCCccCchhhhcCCCCCEEEcccCCCcCccccccccCCCccceeeCCCccccccccCCCCCCCcCccEEeccCCCC
Q 003488 261 LRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNI 340 (816)
Q Consensus 261 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l 340 (816)
+.-|++.....+.|..++++..|.+.+|.+. .+....|..+..++.+.+..|........ +.+... +
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL------~wla~~-~----- 213 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNL------PWLADD-L----- 213 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcccccccc------chhhhH-H-----
Confidence 8888888777788888888888888888877 66666777888888887777753211110 000000 0
Q ss_pred CCCCccccCCcccceeecccccccCCCCchhhccCCCccceEEcCCCcCCCCCCCCCCCCCEEecCCCcCCCcCCCCCCC
Q 003488 341 SEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPR 420 (816)
Q Consensus 341 ~~lp~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 420 (816)
...|..++......-..+.+.++..+.+..|.. +++.+ .+
T Consensus 214 a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c----~~esl------------------~s------------------ 253 (498)
T KOG4237|consen 214 AMNPIETSGARCVSPYRLYYKRINQEDARKFLC----SLESL------------------PS------------------ 253 (498)
T ss_pred hhchhhcccceecchHHHHHHHhcccchhhhhh----hHHhH------------------HH------------------
Confidence 001111222222222333333333332222210 00000 00
Q ss_pred ccEEEccCCccccc-ccccccCCCCCCeEeCCCCCCCCCCCchhhccCCCCEEEccCCcCccCCCccccCCCCccEEEcc
Q 003488 421 LIFFSISNNKLTGE-IPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILN 499 (816)
Q Consensus 421 L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 499 (816)
.+. +.+...+. ....|..+++|+++++++|+++++-+.+|.....++.|.|..|++..+....|.++..|++|+|.
T Consensus 254 --~~~-~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~ 330 (498)
T KOG4237|consen 254 --RLS-SEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLY 330 (498)
T ss_pred --hhc-cccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeec
Confidence 000 00111111 22346777888888888888887778888888888888888888877667777888888888888
Q ss_pred CCcccCCCCcccCCCCCCcEEECcCCcCC
Q 003488 500 DNQFEGPLPQSLANCSRLQVLNVANNRID 528 (816)
Q Consensus 500 ~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 528 (816)
+|+|+...|.+|..+.+|.+|++-.|.+.
T Consensus 331 ~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 331 DNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred CCeeEEEecccccccceeeeeehccCccc
Confidence 88888778888888888888888777653
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.6e-21 Score=237.84 Aligned_cols=359 Identities=22% Similarity=0.290 Sum_probs=256.9
Q ss_pred CCcEEEEECCCCCCcc-ccCCccccccCCCCCEEeCCCCCCCC-----CCCCccccCCC-CCCEEECCCCCCCccCchhh
Q 003488 3 TGQVIGLDLSCSWLHG-SIPSNSSLFLLPYLETLNLGSNDFNS-----SLISSGFGRLI-SLTHLNLSNSYFSGQIPSEI 75 (816)
Q Consensus 3 ~~~l~~L~L~~~~~~~-~~~~~~~~~~l~~L~~L~Ls~~~~~~-----~~~~~~~~~l~-~L~~L~Ls~n~~~~~~~~~l 75 (816)
|.+|+.+.+.-..+.. .+. ..+|..+++|++|.+..+.... ..+|..+..++ +|+.|++.++.+. .+|..+
T Consensus 531 ~~~v~~i~l~~~~~~~~~i~-~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f 608 (1153)
T PLN03210 531 TKKVLGITLDIDEIDELHIH-ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF 608 (1153)
T ss_pred cceeeEEEeccCccceeeec-HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC
Confidence 3467766665444322 122 2268899999999997653211 12667777764 6999999999887 667766
Q ss_pred hcCCCCCEEeCCCCCCccccCCcHHHHhhcCCCCCEEeCCCccCCCccchhhhhccCCCCcEEEccCCcCCCCCCccCCC
Q 003488 76 SQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLAN 155 (816)
Q Consensus 76 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~L~~n~l~~~~~~~l~~ 155 (816)
...+|++|+++++.+..++.+ +..+++|+.|+++++......+ .+..+ ++|++|++++|.....+|..+.+
T Consensus 609 -~~~~L~~L~L~~s~l~~L~~~-----~~~l~~Lk~L~Ls~~~~l~~ip--~ls~l-~~Le~L~L~~c~~L~~lp~si~~ 679 (1153)
T PLN03210 609 -RPENLVKLQMQGSKLEKLWDG-----VHSLTGLRNIDLRGSKNLKEIP--DLSMA-TNLETLKLSDCSSLVELPSSIQY 679 (1153)
T ss_pred -CccCCcEEECcCccccccccc-----cccCCCCCEEECCCCCCcCcCC--ccccC-CcccEEEecCCCCccccchhhhc
Confidence 578999999999977765433 5679999999999876554444 35555 89999999999877788999999
Q ss_pred CCCCCEEEccCCCCCCCchhhhcCCCCCCEEEccCCcCCCCCCccccCCCCccEEEcccCCCCcCCcccCCCCCCCcEEE
Q 003488 156 LPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLR 235 (816)
Q Consensus 156 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 235 (816)
+++|+.|++++|..-..+|..+ ++++|+.|++++|.....+|.. ..+|++|++++|.+. .+|..+ .+++|++|+
T Consensus 680 L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~ 753 (1153)
T PLN03210 680 LNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELI 753 (1153)
T ss_pred cCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-ccccccccc
Confidence 9999999999976555666655 7899999999998765555543 468899999999987 566554 578888888
Q ss_pred CcCCCCC------cccchhhhhCCCCccEEEccCCcCCccCchhhhcCCCCCEEEcccCCCcCccccccccCCCccceee
Q 003488 236 LSGNSLN------GTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLY 309 (816)
Q Consensus 236 l~~n~l~------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 309 (816)
+.++... ..++...+...++|+.|++++|...+.+|..++++++|+.|++++|...+.+|... .+++|+.|+
T Consensus 754 l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~ 831 (1153)
T PLN03210 754 LCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI--NLESLESLD 831 (1153)
T ss_pred ccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--CccccCEEE
Confidence 8774321 01222223336789999999998877889999999999999999986555666432 688899999
Q ss_pred CCCccccccccCCCCCCCcCccEEeccCCCCCCCCccccCCcccceeecccccccCCCCchhhccCCCccceEEcCC
Q 003488 310 LSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSD 386 (816)
Q Consensus 310 L~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~ 386 (816)
+++|.. ..... ...++|+.|++++|.+.++|.++..+++|+.|++++|.--..+|.... .++.|+.+++++
T Consensus 832 Ls~c~~--L~~~p--~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~--~L~~L~~L~l~~ 902 (1153)
T PLN03210 832 LSGCSR--LRTFP--DISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNIS--KLKHLETVDFSD 902 (1153)
T ss_pred CCCCCc--ccccc--ccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccc--cccCCCeeecCC
Confidence 988742 11111 124578888888888888888888888888888887543333444333 344455555444
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.6e-21 Score=237.74 Aligned_cols=213 Identities=21% Similarity=0.238 Sum_probs=128.8
Q ss_pred CcCccEEeccCC-CCCCCCccccCCcccceeecccccccCCCCchhhccCCCccceEEcCCCcCCCCCCC-CCCCCCEEe
Q 003488 327 FPKLLKLGLSAC-NISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQV-PLKNLRFLD 404 (816)
Q Consensus 327 ~~~L~~L~l~~~-~l~~lp~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~ 404 (816)
+++|+.|++++| .+..+|..+ .+++|+.|++++|...+.+|. ...+|++|++++|.+..++.. .+++|+.|+
T Consensus 680 L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~-----~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~ 753 (1153)
T PLN03210 680 LNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD-----ISTNISWLDLDETAIEEFPSNLRLENLDELI 753 (1153)
T ss_pred cCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc-----ccCCcCeeecCCCcccccccccccccccccc
Confidence 334444444443 233444322 344555555555543333332 123455555555555444332 345555555
Q ss_pred cCCCcCC----------CcCCCCCCCccEEEccCCcccccccccccCCCCCCeEeCCCCCCCCCCCchhhccCCCCEEEc
Q 003488 405 LRSNLLQ----------GSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDL 474 (816)
Q Consensus 405 l~~n~l~----------~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l 474 (816)
+.++... ......+++|+.|++++|...+.+|..+.++++|+.|++++|...+.+|... .+++|+.|++
T Consensus 754 l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~L 832 (1153)
T PLN03210 754 LCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDL 832 (1153)
T ss_pred ccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEEC
Confidence 5443211 1111235678888888887777778888888888888888876555666654 5778888888
Q ss_pred cCCcCccCCCccccCCCCccEEEccCCcccCCCCcccCCCCCCcEEECcCCcCCCCCcccccCCCCCcEEEccCcc
Q 003488 475 HLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNK 550 (816)
Q Consensus 475 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 550 (816)
++|.....+|.. .++|+.|++++|.++ .+|.++..+++|+.|++++|.-...+|..+..+++|+.+++++|.
T Consensus 833 s~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 833 SGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 887655455443 356788888888887 567778888888888888764444466667777888888887774
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=2.9e-25 Score=218.54 Aligned_cols=296 Identities=25% Similarity=0.185 Sum_probs=172.6
Q ss_pred hhhccCCCCcEEEccCCcCCCCCCccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEccC-CcCCCCCCccccCCC
Q 003488 127 SLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQ-NNLVGGIPDSFVNLT 205 (816)
Q Consensus 127 ~~~~l~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~ 205 (816)
...++|+...+++|..|+|+...+.+|+.+++|+.||||+|.|+.+.|++|.++++|..|-+.+ |+|+....+.|+++.
T Consensus 61 VP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~ 140 (498)
T KOG4237|consen 61 VPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS 140 (498)
T ss_pred CcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH
Confidence 3445666677777777777766666677777777777777777766666776666666655554 666655555666666
Q ss_pred CccEEEcccCCCCcCCcccCCCCCCCcEEECcCCCCCcccchhhhhCCCCccEEEccCCcCCccCchhhhcCCCCCEEEc
Q 003488 206 QLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRL 285 (816)
Q Consensus 206 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 285 (816)
.|+.|.+.-|++.....+.|..+++|..|.+..|.+. .++...+..+..++.+.+..|.+...
T Consensus 141 slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icd---------------- 203 (498)
T KOG4237|consen 141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICD---------------- 203 (498)
T ss_pred HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccc----------------
Confidence 6666666666666555555666666666666666555 55554444455555555555543210
Q ss_pred ccCCCcCccccccccCCCccceeeCCCccccccccCCCCCCCcCccEEeccCCCCCCCCc--cccCCcccceeecccccc
Q 003488 286 SSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPD--FLRSQDRLEWLQLSENKI 363 (816)
Q Consensus 286 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~--~l~~~~~L~~L~l~~n~l 363 (816)
.+++.+... +..+.+. ...+....-..+.+.++..++. +......+..--.+.+..
T Consensus 204 --------------CnL~wla~~-~a~~~ie-------tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~ 261 (498)
T KOG4237|consen 204 --------------CNLPWLADD-LAMNPIE-------TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFP 261 (498)
T ss_pred --------------cccchhhhH-Hhhchhh-------cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCc
Confidence 111111100 0000000 0001111111122222222221 000001111111112222
Q ss_pred cCCCCchhhccCCCccceEEcCCCcCCCCCCCCCCCCCEEecCCCcCCCcCCCCCCCccEEEccCCcccccccccccCCC
Q 003488 364 YGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAA 443 (816)
Q Consensus 364 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 443 (816)
.+.-|..- +..+++|+.+++++|++++.-+.+|....
T Consensus 262 d~~cP~~c-------------------------------------------f~~L~~L~~lnlsnN~i~~i~~~aFe~~a 298 (498)
T KOG4237|consen 262 DSICPAKC-------------------------------------------FKKLPNLRKLNLSNNKITRIEDGAFEGAA 298 (498)
T ss_pred CCcChHHH-------------------------------------------HhhcccceEeccCCCccchhhhhhhcchh
Confidence 22222111 11234455566666777777778888899
Q ss_pred CCCeEeCCCCCCCCCCCchhhccCCCCEEEccCCcCccCCCccccCCCCccEEEccCCccc
Q 003488 444 PIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFE 504 (816)
Q Consensus 444 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 504 (816)
.+++|.+..|++...-...|.++..|+.|+|.+|+++...|.+|..+.+|.+|.+-.|.+.
T Consensus 299 ~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 299 ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 9999999999998777778999999999999999999999999999999999999998775
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.7e-21 Score=219.45 Aligned_cols=261 Identities=28% Similarity=0.330 Sum_probs=135.5
Q ss_pred cceeecccccccCCCCchhhccCCCccceEEcCCCcCCCCCCCCCCCCCEEecCCCcCCCcCCCCCCCccEEEccCCccc
Q 003488 353 LEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLT 432 (816)
Q Consensus 353 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~ 432 (816)
-..|+++++.++ .+|..+. +.++.|++.+|+++.++. ..++|++|++++|.++.. +..++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~----~~L~~L~L~~N~Lt~LP~-lp~~Lk~LdLs~N~LtsL-P~lp~------------- 262 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP----AHITTLVIPDNNLTSLPA-LPPELRTLEVSGNQLTSL-PVLPP------------- 262 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh----cCCCEEEccCCcCCCCCC-CCCCCcEEEecCCccCcc-cCccc-------------
Confidence 445666666665 3444332 245566666666555443 234455555555544422 22333
Q ss_pred ccccccccCCCCCCeEeCCCCCCCCCCCchhhccCCCCEEEccCCcCccCCCccccCCCCccEEEccCCcccCCCCcccC
Q 003488 433 GEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLA 512 (816)
Q Consensus 433 ~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 512 (816)
+|+.|++++|.+. .+|.. ..+|+.|++++|+++. +|. ..++|+.|++++|++++ +|..
T Consensus 263 -----------sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l-- 320 (788)
T PRK15387 263 -----------GLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL-- 320 (788)
T ss_pred -----------ccceeeccCCchh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC--
Confidence 4555555555544 22221 1245555555555542 222 12445555555555553 2321
Q ss_pred CCCCCcEEECcCCcCCCCCcccccCCCCCcEEEccCcccccccCCCcccccCCCCceeeCCCCcccccCchHHHhhhhhh
Q 003488 513 NCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAM 592 (816)
Q Consensus 513 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~l 592 (816)
..+|+.|++++|++++ +|.. .++|+.|++++|++++..+ ..++|+.|++++|.+++ +|.
T Consensus 321 -p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~LP~------lp~~L~~L~Ls~N~L~~-LP~--------- 379 (788)
T PRK15387 321 -PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLASLPT------LPSELYKLWAYNNRLTS-LPA--------- 379 (788)
T ss_pred -cccccccccccCcccc-cccc---ccccceEecCCCccCCCCC------CCcccceehhhcccccc-Ccc---------
Confidence 1245555566665553 2321 1355666666666654321 12455666666666653 331
Q ss_pred hccCCCcccceeeccccccceeeEEEeecceecccccccceEEEccCCcccccCchhhhCCCCCcEEEccCCcCcccCCc
Q 003488 593 MRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPS 672 (816)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~ 672 (816)
....|+.||+++|+|++ +|.. .++|+.|++++|++++ +|.
T Consensus 380 -----------------------------------l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~ 419 (788)
T PRK15387 380 -----------------------------------LPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPM 419 (788)
T ss_pred -----------------------------------cccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCc
Confidence 11235566677777663 4432 2456677777777763 554
Q ss_pred cccccCCCCeEeCCCCcccccCccccCCcCcCCeEeCccCccccCCCC
Q 003488 673 SLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQ 720 (816)
Q Consensus 673 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 720 (816)
.. .+|+.|++++|+++ .+|.++.++++|+.|++++|+|+|.+|.
T Consensus 420 l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 420 LP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred ch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 32 35666777777776 5666677777777777777777766554
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=2.5e-21 Score=218.07 Aligned_cols=266 Identities=27% Similarity=0.327 Sum_probs=161.1
Q ss_pred CccEEeccCCCCCCCCccccCCcccceeecccccccCCCCchhhccCCCccceEEcCCCcCCCCCCCCCCCCCEEecCCC
Q 003488 329 KLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSN 408 (816)
Q Consensus 329 ~L~~L~l~~~~l~~lp~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n 408 (816)
.-..|+++.+.++++|..+. ++|+.|++.+|+++. +|. ..++|++|++++|+++.++. ..++|+.|++++|
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~-LP~-----lp~~Lk~LdLs~N~LtsLP~-lp~sL~~L~Ls~N 272 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-LPA-----LPPELRTLEVSGNQLTSLPV-LPPGLLELSIFSN 272 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCC-CCC-----CCCCCcEEEecCCccCcccC-cccccceeeccCC
Confidence 45678999999999998665 489999999999986 443 35789999999999998864 3578999999999
Q ss_pred cCCCcCCCCCCCccEEEccCCcccccccccccCCCCCCeEeCCCCCCCCCCCchhhccCCCCEEEccCCcCccCCCcccc
Q 003488 409 LLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISA 488 (816)
Q Consensus 409 ~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 488 (816)
.++.. +..+..|+.|++++|+++.. |. ..++|+.|++++|++++ +|.. ...|+.|++++|.+
T Consensus 273 ~L~~L-p~lp~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L--------- 334 (788)
T PRK15387 273 PLTHL-PALPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQL--------- 334 (788)
T ss_pred chhhh-hhchhhcCEEECcCCccccc-cc---cccccceeECCCCcccc-CCCC---cccccccccccCcc---------
Confidence 87642 22445566666666665532 22 12445555555555553 2221 12344444444444
Q ss_pred CCCCccEEEccCCcccCCCCcccCCCCCCcEEECcCCcCCCCCcccccCCCCCcEEEccCcccccccCCCcccccCCCCc
Q 003488 489 NGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLR 568 (816)
Q Consensus 489 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 568 (816)
++ +|.. ..+|+.|++++|++++ +|.. .++|+.|++++|++.+... ...+|+
T Consensus 335 ---------------~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~------l~~~L~ 385 (788)
T PRK15387 335 ---------------TS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPA------LPSGLK 385 (788)
T ss_pred ---------------cc-cccc---ccccceEecCCCccCC-CCCC---CcccceehhhccccccCcc------cccccc
Confidence 42 2321 1345555555555553 2221 1345555555555554311 123466
Q ss_pred eeeCCCCcccccCchHHHhhhhhhhccCCCcccceeeccccccceeeEEEeecceecccccccceEEEccCCcccccCch
Q 003488 569 ILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPE 648 (816)
Q Consensus 569 ~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~ 648 (816)
.|++++|++++ +|. ..+.|+.||+|+|++++ +|.
T Consensus 386 ~LdLs~N~Lt~-LP~--------------------------------------------l~s~L~~LdLS~N~Lss-IP~ 419 (788)
T PRK15387 386 ELIVSGNRLTS-LPV--------------------------------------------LPSELKELMVSGNRLTS-LPM 419 (788)
T ss_pred eEEecCCcccC-CCC--------------------------------------------cccCCCEEEccCCcCCC-CCc
Confidence 66666666653 331 12235566777777663 554
Q ss_pred hhhCCCCCcEEEccCCcCcccCCccccccCCCCeEeCCCCcccccCccccCC
Q 003488 649 VVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTS 700 (816)
Q Consensus 649 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 700 (816)
.. .+|+.|++++|+++ .+|..+.++++|+.|+|++|++++.+|..+..
T Consensus 420 l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 420 LP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred ch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 32 35666777777776 56777777777777777777777776665533
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=3.2e-19 Score=202.82 Aligned_cols=98 Identities=32% Similarity=0.405 Sum_probs=41.1
Q ss_pred CCCeEeCCCCCCCCCCCchhhccCCCCEEEccCCcCccCCCccccCCCCccEEEccCCcccCCCCcccCCCCCCcEEECc
Q 003488 444 PIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVA 523 (816)
Q Consensus 444 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 523 (816)
+|+.|++++|++. .+|..+. .+|+.|++++|++.. +|..+. ++|+.|++++|++++ +|..+. ++|+.|+++
T Consensus 242 ~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls 312 (754)
T PRK15370 242 TIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQ 312 (754)
T ss_pred cccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhc
Confidence 3444555555444 3333332 244555555554442 333221 244555555554442 232221 244455555
Q ss_pred CCcCCCCCcccccCCCCCcEEEccCccccc
Q 003488 524 NNRIDDTFPHWLAQLPELLVLILRSNKFYG 553 (816)
Q Consensus 524 ~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 553 (816)
+|+++. +|..+ .++|+.|++++|.+++
T Consensus 313 ~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~ 339 (754)
T PRK15370 313 SNSLTA-LPETL--PPGLKTLEAGENALTS 339 (754)
T ss_pred CCcccc-CCccc--cccceeccccCCcccc
Confidence 555443 22221 1344445555554443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=6.3e-19 Score=200.41 Aligned_cols=246 Identities=26% Similarity=0.379 Sum_probs=181.9
Q ss_pred CCEEecCCCcCCCcCCCCCCCccEEEccCCcccccccccccCCCCCCeEeCCCCCCCCCCCchhhccCCCCEEEccCCcC
Q 003488 400 LRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSF 479 (816)
Q Consensus 400 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l 479 (816)
...|+++++.++..+...++.++.|++++|.++. +|..+. ++|+.|++++|+++ .+|..+. .+|+.|++++|.+
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L 253 (754)
T PRK15370 180 KTELRLKILGLTTIPACIPEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRI 253 (754)
T ss_pred ceEEEeCCCCcCcCCcccccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCcc
Confidence 3445555555554333345566677777777764 444443 47999999999988 5676554 4799999999999
Q ss_pred ccCCCccccCCCCccEEEccCCcccCCCCcccCCCCCCcEEECcCCcCCCCCcccccCCCCCcEEEccCcccccccCCCc
Q 003488 480 NGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTD 559 (816)
Q Consensus 480 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 559 (816)
. .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|.++....
T Consensus 254 ~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~LP~--- 321 (754)
T PRK15370 254 T-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTALPE--- 321 (754)
T ss_pred C-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccCCc---
Confidence 8 5565543 57999999999998 5676553 589999999999986 444432 478999999999986522
Q ss_pred ccccCCCCceeeCCCCcccccCchHHHhhhhhhhccCCCcccceeeccccccceeeEEEeecceecccccccceEEEccC
Q 003488 560 ARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSS 639 (816)
Q Consensus 560 ~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~ 639 (816)
...++|+.|++++|.+++ +|..+ .+.|+.|++++
T Consensus 322 --~l~~sL~~L~Ls~N~Lt~-LP~~l-------------------------------------------~~sL~~L~Ls~ 355 (754)
T PRK15370 322 --TLPPGLKTLEAGENALTS-LPASL-------------------------------------------PPELQVLDVSK 355 (754)
T ss_pred --cccccceeccccCCcccc-CChhh-------------------------------------------cCcccEEECCC
Confidence 124689999999999885 55322 34678899999
Q ss_pred CcccccCchhhhCCCCCcEEEccCCcCcccCCccccccCCCCeEeCCCCcccccCccc----cCCcCcCCeEeCccCccc
Q 003488 640 NRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQ----LTSLNFLSKLNLSHNQLE 715 (816)
Q Consensus 640 N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~ls~N~l~ 715 (816)
|+|+ .+|..+. ++|++|+|++|+++ .+|..+. ..|+.|++++|+++ .+|.+ +..++.+..+++.+|+++
T Consensus 356 N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 356 NQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 9998 5777664 68999999999998 5677665 47999999999998 44544 445588899999999987
Q ss_pred c
Q 003488 716 G 716 (816)
Q Consensus 716 g 716 (816)
.
T Consensus 429 ~ 429 (754)
T PRK15370 429 E 429 (754)
T ss_pred H
Confidence 4
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=2e-18 Score=183.40 Aligned_cols=278 Identities=24% Similarity=0.267 Sum_probs=136.0
Q ss_pred EeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCcc----CchhhhcCCCCCEEeCCCCCCcccc--CCcHHHHhhcCCC
Q 003488 35 LNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQ----IPSEISQLSKMLSLDLSKNDEVRIE--SPVWKGLIENLTK 108 (816)
Q Consensus 35 L~Ls~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L~Ls~n~~~~~~--~~~~~~~l~~l~~ 108 (816)
|+|..+.+++..+...+..+.+|++|+++++.++.. ++..+...++|++++++++.+...+ .......+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 334444443222333344444455555554444321 2233334444555555444332100 0111223444555
Q ss_pred CCEEeCCCccCCCccchhhhhccC--CCCcEEEccCCcCCC----CCCccCCCC-CCCCEEEccCCCCCCC----chhhh
Q 003488 109 LKELVLSEVDMSTIVLDYSLTNLS--SSLSYLHLTGCNLIG----PIPASLANL-PQLTSLSLSYNHFSGH----IPSFL 177 (816)
Q Consensus 109 L~~L~l~~~~~~~~~~~~~~~~l~--~~L~~L~L~~n~l~~----~~~~~l~~l-~~L~~L~Ls~n~l~~~----~~~~~ 177 (816)
|+.|++++|.+...... .+..+. ++|++|++++|.+.+ .+...+..+ ++|+.|++++|.+++. ++..+
T Consensus 83 L~~L~l~~~~~~~~~~~-~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 83 LQELDLSDNALGPDGCG-VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred eeEEEccCCCCChhHHH-HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 55555555555433222 222221 126666666555542 122233444 6667777777666632 23345
Q ss_pred cCCCCCCEEEccCCcCCCC----CCccccCCCCccEEEcccCCCCcC----CcccCCCCCCCcEEECcCCCCCcccchhh
Q 003488 178 SHLKQLYYLNLEQNNLVGG----IPDSFVNLTQLSFLDLSWNQLTGR----LPSCLKGLRNLVTLRLSGNSLNGTIPSWL 249 (816)
Q Consensus 178 ~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 249 (816)
..+++|++|++++|.+.+. ++..+..+++|++|++++|.+.+. ++..+..+++|++|++++|.+++.....+
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 5566677777777766532 223344556777777777766532 22345566777777777777664222222
Q ss_pred hhC----CCCccEEEccCCcCCc----cCchhhhcCCCCCEEEcccCCCcCccc---cccccCC-CccceeeCCCc
Q 003488 250 FTV----LPYLEVIHLRDNRFTG----SIPSTIFELVNLTSIRLSSNNLSGHIE---LCMFARL-KNLQYLYLSQN 313 (816)
Q Consensus 250 ~~~----l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~~l-~~L~~L~L~~n 313 (816)
... .+.|++|++++|.+++ .+...+..+++|+++++++|.+...-. ...+... +.|+++++.+|
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 221 3577777777777652 223344555677777777777663310 0122222 45566665554
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=2.9e-18 Score=182.17 Aligned_cols=279 Identities=24% Similarity=0.279 Sum_probs=202.3
Q ss_pred EEECCCCCCcc-ccCCccccccCCCCCEEeCCCCCCCCC---CCCccccCCCCCCEEECCCCCCCc------cCchhhhc
Q 003488 8 GLDLSCSWLHG-SIPSNSSLFLLPYLETLNLGSNDFNSS---LISSGFGRLISLTHLNLSNSYFSG------QIPSEISQ 77 (816)
Q Consensus 8 ~L~L~~~~~~~-~~~~~~~~~~l~~L~~L~Ls~~~~~~~---~~~~~~~~l~~L~~L~Ls~n~~~~------~~~~~l~~ 77 (816)
.|+|.++.+.+ .+.. -+..+++|++|+++++.++.. .++..+...++|++|+++++.+.+ .++..+.+
T Consensus 2 ~l~L~~~~l~~~~~~~--~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~ 79 (319)
T cd00116 2 QLSLKGELLKTERATE--LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK 79 (319)
T ss_pred ccccccCcccccchHH--HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh
Confidence 47788888863 3433 566788899999999988542 144567788889999999998762 24456778
Q ss_pred CCCCCEEeCCCCCCccccCCcHHHHhhcCCCCCEEeCCCccCCCccchh---hhhccCCCCcEEEccCCcCCCC----CC
Q 003488 78 LSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDY---SLTNLSSSLSYLHLTGCNLIGP----IP 150 (816)
Q Consensus 78 l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~l~~~L~~L~L~~n~l~~~----~~ 150 (816)
+++|++|++++|.+.......+...... ++|++|++++|.+++..... .+..++++|++|++++|.+++. ++
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~ 158 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA 158 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence 9999999999997764333334443444 66999999999987543321 3344447899999999998843 34
Q ss_pred ccCCCCCCCCEEEccCCCCCCC----chhhhcCCCCCCEEEccCCcCCCC----CCccccCCCCccEEEcccCCCCcCCc
Q 003488 151 ASLANLPQLTSLSLSYNHFSGH----IPSFLSHLKQLYYLNLEQNNLVGG----IPDSFVNLTQLSFLDLSWNQLTGRLP 222 (816)
Q Consensus 151 ~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~ 222 (816)
..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+. ++..+..+++|++|++++|.+.+...
T Consensus 159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~ 238 (319)
T cd00116 159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA 238 (319)
T ss_pred HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence 4566778999999999999843 334556678999999999998743 33456788999999999999875322
Q ss_pred ccC-----CCCCCCcEEECcCCCCCcc----cchhhhhCCCCccEEEccCCcCCcc----CchhhhcC-CCCCEEEcccC
Q 003488 223 SCL-----KGLRNLVTLRLSGNSLNGT----IPSWLFTVLPYLEVIHLRDNRFTGS----IPSTIFEL-VNLTSIRLSSN 288 (816)
Q Consensus 223 ~~l-----~~l~~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l-~~L~~L~L~~n 288 (816)
..+ ...+.|++|++++|.+++. +... ...+++|+++++++|.++.. ....+... +.|+++++.+|
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~-~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEV-LAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHH-HhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 222 1347999999999998622 2232 33368999999999999854 44444455 68999998887
Q ss_pred CC
Q 003488 289 NL 290 (816)
Q Consensus 289 ~l 290 (816)
.+
T Consensus 318 ~~ 319 (319)
T cd00116 318 SF 319 (319)
T ss_pred CC
Confidence 53
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=2.2e-18 Score=150.67 Aligned_cols=182 Identities=31% Similarity=0.567 Sum_probs=138.2
Q ss_pred CCCCccEEEccCCcccCCCCcccCCCCCCcEEECcCCcCCCCCcccccCCCCCcEEEccCcccccccCCCcccccCCCCc
Q 003488 489 NGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLR 568 (816)
Q Consensus 489 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 568 (816)
.+..++.|.+++|+++ ..|..+..+.+|++|++++|++.+ .|..++.++.|+.|+++-|++... +..++.+|.|+
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~~l---prgfgs~p~le 105 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLNIL---PRGFGSFPALE 105 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhhcC---ccccCCCchhh
Confidence 3455666777777777 566677777788888888887764 566777788888888888877665 35778888888
Q ss_pred eeeCCCCcccc-cCchHHHhhhhhhhccCCCcccceeeccccccceeeEEEeecceecccccccceEEEccCCcccccCc
Q 003488 569 ILDLSRNEFTG-VLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIP 647 (816)
Q Consensus 569 ~L~Ls~N~l~~-~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip 647 (816)
.||+++|++.. .+|..+| .+..|..|.|+.|.+. .+|
T Consensus 106 vldltynnl~e~~lpgnff-----------------------------------------~m~tlralyl~dndfe-~lp 143 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFF-----------------------------------------YMTTLRALYLGDNDFE-ILP 143 (264)
T ss_pred hhhccccccccccCCcchh-----------------------------------------HHHHHHHHHhcCCCcc-cCC
Confidence 88888888864 4454443 2344556788899988 789
Q ss_pred hhhhCCCCCcEEEccCCcCcccCCccccccCCCCeEeCCCCcccccCccccCCcCc---CCeEeCccCccccCCC
Q 003488 648 EVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNF---LSKLNLSHNQLEGPIP 719 (816)
Q Consensus 648 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~---L~~L~ls~N~l~g~ip 719 (816)
..++++++|+.|.+..|.+. .+|..++.++.|+.|++.+|+++ .+|+.++++.- =+.+.+.+|+...+|-
T Consensus 144 ~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIa 216 (264)
T KOG0617|consen 144 PDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIA 216 (264)
T ss_pred hhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHH
Confidence 99999999999999999998 78999999999999999999999 55667766542 2445666777765543
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.61 E-value=2.1e-15 Score=171.53 Aligned_cols=118 Identities=36% Similarity=0.562 Sum_probs=105.5
Q ss_pred cceEEEccCCcccccCchhhhCCCCCcEEEccCCcCcccCCccccccCCCCeEeCCCCcccccCccccCCcCcCCeEeCc
Q 003488 631 IFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLS 710 (816)
Q Consensus 631 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 710 (816)
.++.|+|++|.++|.+|..++++++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccCCCCCCC--CCccccccccCccCCCCCCCCCCCC
Q 003488 711 HNQLEGPIPQGPQ--FNTFQSDSYIGNLGLCGFPLSDKCS 748 (816)
Q Consensus 711 ~N~l~g~ip~~~~--~~~~~~~~~~~n~~lcg~~~~~~c~ 748 (816)
+|+++|.+|.... +.......+.+|+.+||.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 9999999997522 1222344578999999987666774
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=2.6e-16 Score=137.78 Aligned_cols=153 Identities=31% Similarity=0.500 Sum_probs=88.9
Q ss_pred CCCcEEEccCCcCCCCCCccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEccCCcCCCCCCccccCCCCccEEEc
Q 003488 133 SSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDL 212 (816)
Q Consensus 133 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 212 (816)
..++.|.|++|+++ .+|..++.+.+|+.|++++|+++ ..|..++.+++|+.|+++-|++. ..|..|+.+|.|+.||+
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence 44555555555555 34445555666666666666655 44555566666666666665554 55556666666666666
Q ss_pred ccCCCCc-CCcccCCCCCCCcEEECcCCCCCcccchhhhhCCCCccEEEccCCcCCccCchhhhcCCCCCEEEcccCCCc
Q 003488 213 SWNQLTG-RLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLS 291 (816)
Q Consensus 213 ~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 291 (816)
.+|.+.+ ..|..|..++.|+.|+++.|.+. .+|..+.. +++|+.|.++.|.+- .+|..++.++.|++|.+.+|+++
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~-lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGK-LTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhh-hcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 6655543 34555555566666666666655 55555554 666666666666554 45566666666666666666655
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.30 E-value=5.3e-12 Score=143.95 Aligned_cols=113 Identities=31% Similarity=0.481 Sum_probs=101.1
Q ss_pred CCceeeCCCCcccccCchHHHhhhhhhhccCCCcccceeeccccccceeeEEEeecceecccccccceEEEccCCccccc
Q 003488 566 KLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQ 645 (816)
Q Consensus 566 ~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ 645 (816)
.++.|+|++|.++|.+|..+. .++.|+.|+|++|+++|.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~-----------------------------------------~L~~L~~L~Ls~N~l~g~ 457 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDIS-----------------------------------------KLRHLQSINLSGNSIRGN 457 (623)
T ss_pred EEEEEECCCCCccccCCHHHh-----------------------------------------CCCCCCEEECCCCcccCc
Confidence 478899999999999986542 567889999999999999
Q ss_pred CchhhhCCCCCcEEEccCCcCcccCCccccccCCCCeEeCCCCcccccCccccCCc-CcCCeEeCccCccccCCC
Q 003488 646 IPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSL-NFLSKLNLSHNQLEGPIP 719 (816)
Q Consensus 646 ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~ip 719 (816)
+|..++.+++|+.|||++|+++|.+|+.++++++|+.|||++|+++|.+|..+..+ .++..+++++|+..+.+|
T Consensus 458 iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 458 IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99999999999999999999999999999999999999999999999999998764 467889999997655455
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.22 E-value=9.7e-13 Score=129.31 Aligned_cols=252 Identities=24% Similarity=0.278 Sum_probs=155.4
Q ss_pred cccCCCCCEEeCCCCCCCCC---CCCccccCCCCCCEEECCCCC---CCccCchh-------hhcCCCCCEEeCCCCCCc
Q 003488 26 LFLLPYLETLNLGSNDFNSS---LISSGFGRLISLTHLNLSNSY---FSGQIPSE-------ISQLSKMLSLDLSKNDEV 92 (816)
Q Consensus 26 ~~~l~~L~~L~Ls~~~~~~~---~~~~~~~~l~~L~~L~Ls~n~---~~~~~~~~-------l~~l~~L~~L~Ls~n~~~ 92 (816)
+..+..+++++||+|.+... .+...+.+.+.|+..++++-. ....+|.. +..+++|++||||.|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 44566777888888776432 023345666777777777642 22234433 345678888888888766
Q ss_pred cccCCcHHHHhhcCCCCCEEeCCCccCCCccchhhhhccCCCCcEEEccCCcCCCCCCccCCCCCCCCEEEccCCCCCCC
Q 003488 93 RIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGH 172 (816)
Q Consensus 93 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 172 (816)
.-....+...+.+++.|++|.|.+|.+....-. .++ ..|.+|. .++ ..+.-++|+++....|.+...
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~-~l~---~al~~l~--~~k-------k~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGG-RLG---RALFELA--VNK-------KAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHH-HHH---HHHHHHH--HHh-------ccCCCcceEEEEeeccccccc
Confidence 655566777777788888888887776644322 111 2222222 111 223446788888888877632
Q ss_pred ----chhhhcCCCCCCEEEccCCcCCC----CCCccccCCCCccEEEcccCCCCcC----CcccCCCCCCCcEEECcCCC
Q 003488 173 ----IPSFLSHLKQLYYLNLEQNNLVG----GIPDSFVNLTQLSFLDLSWNQLTGR----LPSCLKGLRNLVTLRLSGNS 240 (816)
Q Consensus 173 ----~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~ 240 (816)
+...|...+.|+.+.++.|.|.. ....+|..+++|+.|||.+|.++.. +...+..+++|+.+++++|.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 33466777888888888887752 2334577888888888888877642 33445667778888888887
Q ss_pred CCcccchh----hhhCCCCccEEEccCCcCCcc----CchhhhcCCCCCEEEcccCCC
Q 003488 241 LNGTIPSW----LFTVLPYLEVIHLRDNRFTGS----IPSTIFELVNLTSIRLSSNNL 290 (816)
Q Consensus 241 l~~~~~~~----~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l 290 (816)
+....... +-...|.|+.+.+.+|.++.. +...+...+.|..|++++|.+
T Consensus 253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 76443322 223356777777777776522 122233455666666666665
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.20 E-value=4.7e-13 Score=139.18 Aligned_cols=189 Identities=30% Similarity=0.482 Sum_probs=118.4
Q ss_pred EEccCCcCccCCCccccCCCCccEEEccCCcccCCCCcccCCCCCCcEEECcCCcCCCCCcccccCCCCCcEEEccCccc
Q 003488 472 LDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKF 551 (816)
Q Consensus 472 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l 551 (816)
.|++.|++. .+|..++.+..|+.+.+..|.+. .+|.++.++..|..|||+.|+++. .|..+..|+ |+.|.+++|++
T Consensus 80 aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~-lp~~lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 80 ADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSH-LPDGLCDLP-LKVLIVSNNKL 155 (722)
T ss_pred hhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhc-CChhhhcCc-ceeEEEecCcc
Confidence 344444443 33444444444555555555554 455555566666666666666553 344444443 56666666666
Q ss_pred ccccCCCcccccCCCCceeeCCCCcccccCchHHHhhhhhhhccCCCcccceeeccccccceeeEEEeecceeccccccc
Q 003488 552 YGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSI 631 (816)
Q Consensus 552 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 631 (816)
+.... ..+..++|..||.+.|.+. .+|... +.+.+
T Consensus 156 ~~lp~---~ig~~~tl~~ld~s~nei~-slpsql-----------------------------------------~~l~s 190 (722)
T KOG0532|consen 156 TSLPE---EIGLLPTLAHLDVSKNEIQ-SLPSQL-----------------------------------------GYLTS 190 (722)
T ss_pred ccCCc---ccccchhHHHhhhhhhhhh-hchHHh-----------------------------------------hhHHH
Confidence 65532 3345667777777777775 233222 13455
Q ss_pred ceEEEccCCcccccCchhhhCCCCCcEEEccCCcCcccCCccccccCCCCeEeCCCCcccccCcccc---CCcCcCCeEe
Q 003488 632 FLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQL---TSLNFLSKLN 708 (816)
Q Consensus 632 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~ 708 (816)
|..|.+..|++. ..|+++.. -.|..||+|+|+++ .||-.|.+|+.|++|-|.+|.|.. .|..+ +...=.++|+
T Consensus 191 lr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~ 266 (722)
T KOG0532|consen 191 LRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLS 266 (722)
T ss_pred HHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeec
Confidence 666777788887 57888884 46788999999998 899999999999999999999984 44443 3444566776
Q ss_pred CccCc
Q 003488 709 LSHNQ 713 (816)
Q Consensus 709 ls~N~ 713 (816)
..-++
T Consensus 267 ~qA~q 271 (722)
T KOG0532|consen 267 TQACQ 271 (722)
T ss_pred chhcc
Confidence 66553
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.7e-11 Score=123.94 Aligned_cols=163 Identities=25% Similarity=0.220 Sum_probs=78.6
Q ss_pred cCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCcc--CchhhhcCCCCCEEeCCCCCCccccCCcHHHHhhc
Q 003488 28 LLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQ--IPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIEN 105 (816)
Q Consensus 28 ~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~--~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~ 105 (816)
++.+||...|.++.............|++++.||||+|-+..- +-.....+++|+.|+++.|.+....+.... ..
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~---~~ 195 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT---LL 195 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch---hh
Confidence 5666666666666543310112455666677777776665532 112234566666666666654432222111 13
Q ss_pred CCCCCEEeCCCccCCCccchhhhhccCCCCcEEEccCCcCCCCCCccCCCCCCCCEEEccCCCCCCCc-hhhhcCCCCCC
Q 003488 106 LTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHI-PSFLSHLKQLY 184 (816)
Q Consensus 106 l~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~ 184 (816)
++.|+.|.++.|.++..........+ |+|+.|+|..|............+..|+.|||++|++-... -...+.++.|+
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~f-Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTF-PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhC-CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence 45555555666655544333222333 55555555555322222222333445555555555543211 12334455555
Q ss_pred EEEccCCcCC
Q 003488 185 YLNLEQNNLV 194 (816)
Q Consensus 185 ~L~L~~n~l~ 194 (816)
.|+++.+.+.
T Consensus 275 ~Lnls~tgi~ 284 (505)
T KOG3207|consen 275 QLNLSSTGIA 284 (505)
T ss_pred hhhccccCcc
Confidence 5555555443
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.11 E-value=9.8e-12 Score=122.38 Aligned_cols=237 Identities=20% Similarity=0.215 Sum_probs=132.6
Q ss_pred CcEEEEECCCCCCcc----ccCCccccccCCCCCEEeCCCCCCCCCC---CCc-------cccCCCCCCEEECCCCCCCc
Q 003488 4 GQVIGLDLSCSWLHG----SIPSNSSLFLLPYLETLNLGSNDFNSSL---ISS-------GFGRLISLTHLNLSNSYFSG 69 (816)
Q Consensus 4 ~~l~~L~L~~~~~~~----~~~~~~~~~~l~~L~~L~Ls~~~~~~~~---~~~-------~~~~l~~L~~L~Ls~n~~~~ 69 (816)
..+++|+|++|.+.- .+.. .+.+.++|+.-++|+- +++.. +|+ ++..+++|++||||+|.+..
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~--~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAK--VLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHH--HHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 358999999999832 2333 5678889999999875 33321 332 35567899999999999876
Q ss_pred cCchh----hhcCCCCCEEeCCCCCCccccCCcHHHH---------hhcCCCCCEEeCCCccCCCccchhhhhccCCCCc
Q 003488 70 QIPSE----ISQLSKMLSLDLSKNDEVRIESPVWKGL---------IENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLS 136 (816)
Q Consensus 70 ~~~~~----l~~l~~L~~L~Ls~n~~~~~~~~~~~~~---------l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~ 136 (816)
..++. +.+++.|++|.|.+|.+.......+... .+.-++||.+...+|.+.......
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~---------- 176 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATA---------- 176 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHH----------
Confidence 55544 4679999999999997776554443322 233445555555555554433220
Q ss_pred EEEccCCcCCCCCCccCCCCCCCCEEEccCCCCCC----CchhhhcCCCCCCEEEccCCcCCC----CCCccccCCCCcc
Q 003488 137 YLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSG----HIPSFLSHLKQLYYLNLEQNNLVG----GIPDSFVNLTQLS 208 (816)
Q Consensus 137 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~ 208 (816)
+...|...+.|+.+.++.|.|.. .....+..+++|+.|||.+|-++. .+...+..+++|+
T Consensus 177 ------------~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~ 244 (382)
T KOG1909|consen 177 ------------LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLR 244 (382)
T ss_pred ------------HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhe
Confidence 11122333444444444444431 122344455555555555554432 1223344455555
Q ss_pred EEEcccCCCCcCCcccC-----CCCCCCcEEECcCCCCCccc----chhhhhCCCCccEEEccCCcC
Q 003488 209 FLDLSWNQLTGRLPSCL-----KGLRNLVTLRLSGNSLNGTI----PSWLFTVLPYLEVIHLRDNRF 266 (816)
Q Consensus 209 ~L~L~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~----~~~~~~~l~~L~~L~l~~n~l 266 (816)
.|++++|.+...-...+ ...++|+++.+.+|.++..- ...+. ..|.|+.|++++|.+
T Consensus 245 El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~-ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 245 ELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMA-EKPDLEKLNLNGNRL 310 (382)
T ss_pred eecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHh-cchhhHHhcCCcccc
Confidence 55555555543222111 23456666666666654211 11112 256677777777766
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.11 E-value=3.1e-12 Score=133.16 Aligned_cols=191 Identities=29% Similarity=0.419 Sum_probs=126.2
Q ss_pred CeEeCCCCCCCCCCCchhhccCCCCEEEccCCcCccCCCccccCCCCccEEEccCCcccCCCCcccCCCCCCcEEECcCC
Q 003488 446 EFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANN 525 (816)
Q Consensus 446 ~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N 525 (816)
...|++.|++. ++|..+..+..|+.+.+..|.+. .+|...+++..|+.++|+.|+++ .+|..+..|+ |+.|-+++|
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence 34556666665 55555555556666666666665 45556666666666666666666 4555555554 666666666
Q ss_pred cCCCCCcccccCCCCCcEEEccCcccccccCCCcccccCCCCceeeCCCCcccccCchHHHhhhhhhhccCCCcccceee
Q 003488 526 RIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQY 605 (816)
Q Consensus 526 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~ 605 (816)
+++ .+|+.++..+.|..|+.+.|.+.... ..++.+.+|+.|.+..|++.. +|.+..
T Consensus 154 kl~-~lp~~ig~~~tl~~ld~s~nei~slp---sql~~l~slr~l~vrRn~l~~-lp~El~------------------- 209 (722)
T KOG0532|consen 154 KLT-SLPEEIGLLPTLAHLDVSKNEIQSLP---SQLGYLTSLRDLNVRRNHLED-LPEELC------------------- 209 (722)
T ss_pred ccc-cCCcccccchhHHHhhhhhhhhhhch---HHhhhHHHHHHHHHhhhhhhh-CCHHHh-------------------
Confidence 665 35555666666666666666666552 355666667777777776652 333321
Q ss_pred ccccccceeeEEEeecceecccccccceEEEccCCcccccCchhhhCCCCCcEEEccCCcCcccCCccc---cccCCCCe
Q 003488 606 MHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSL---RNLTVLES 682 (816)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l---~~l~~L~~ 682 (816)
.-.|..||+|+|+++ .||-+|.+|+.|++|-|.+|.+. ..|..+ |+..--++
T Consensus 210 -----------------------~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKy 264 (722)
T KOG0532|consen 210 -----------------------SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKY 264 (722)
T ss_pred -----------------------CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeee
Confidence 112567999999999 79999999999999999999998 667654 55566678
Q ss_pred EeCCCCc
Q 003488 683 LDLSSNR 689 (816)
Q Consensus 683 L~Ls~N~ 689 (816)
|+..-++
T Consensus 265 L~~qA~q 271 (722)
T KOG0532|consen 265 LSTQACQ 271 (722)
T ss_pred ecchhcc
Confidence 8888875
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.09 E-value=3.4e-11 Score=115.56 Aligned_cols=133 Identities=32% Similarity=0.353 Sum_probs=99.2
Q ss_pred CCCCCcEEEccCcccccccCCCcccccCCCCceeeCCCCcccccCchHHHhhhhhhhccCCCcccceeeccccccceeeE
Q 003488 537 QLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAF 616 (816)
Q Consensus 537 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 616 (816)
..+.|++++|++|.|+... ......|.++.|++|+|.+...-. +
T Consensus 282 TWq~LtelDLS~N~I~~iD---ESvKL~Pkir~L~lS~N~i~~v~n------L--------------------------- 325 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQID---ESVKLAPKLRRLILSQNRIRTVQN------L--------------------------- 325 (490)
T ss_pred hHhhhhhccccccchhhhh---hhhhhccceeEEeccccceeeehh------h---------------------------
Confidence 3456677777777766652 345567778888888887763211 1
Q ss_pred EEeecceecccccccceEEEccCCcccccCchhhhCCCCCcEEEccCCcCcccCCccccccCCCCeEeCCCCcccccCc-
Q 003488 617 FTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIP- 695 (816)
Q Consensus 617 ~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p- 695 (816)
..+++|+.||||+|.++ .+-..-.++.+.+.|+|++|.+... ..++++-+|+.||+++|++.....
T Consensus 326 ----------a~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV 392 (490)
T KOG1259|consen 326 ----------AELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEV 392 (490)
T ss_pred ----------hhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHh
Confidence 14667788888888887 3444455678899999999999754 678999999999999999985543
Q ss_pred cccCCcCcCCeEeCccCccccCC
Q 003488 696 TQLTSLNFLSKLNLSHNQLEGPI 718 (816)
Q Consensus 696 ~~l~~l~~L~~L~ls~N~l~g~i 718 (816)
.++++++-|+.+.+.+|++++.+
T Consensus 393 ~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 393 NHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred cccccccHHHHHhhcCCCccccc
Confidence 56889999999999999999753
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.09 E-value=1.4e-10 Score=126.78 Aligned_cols=84 Identities=36% Similarity=0.515 Sum_probs=43.3
Q ss_pred ceEEEccCCcccccCchhhhCCCCCcEEEccCCcCcccCCccccccCCCCeEeCCCCcccccCccccCCcCcCCeEeCcc
Q 003488 632 FLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSH 711 (816)
Q Consensus 632 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 711 (816)
|..+++++|.+. .++..+.++..+..+.+++|++. .+|..++.++++++|++++|.++...+ +..+.+|+.|++++
T Consensus 211 L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~ 286 (394)
T COG4886 211 LEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSG 286 (394)
T ss_pred hhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccC
Confidence 344444555322 34444555555555555555554 224455555555555555555553332 55555555555555
Q ss_pred CccccCCC
Q 003488 712 NQLEGPIP 719 (816)
Q Consensus 712 N~l~g~ip 719 (816)
|.++...|
T Consensus 287 n~~~~~~~ 294 (394)
T COG4886 287 NSLSNALP 294 (394)
T ss_pred ccccccch
Confidence 55554444
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=2.6e-11 Score=122.64 Aligned_cols=136 Identities=29% Similarity=0.367 Sum_probs=60.3
Q ss_pred CCCCcEEECcCCCCCcccchhhhhCCCCccEEEccCCcCCccCchhhhcCCCCCEEEcccCCCcCccccccccCCCccce
Q 003488 228 LRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQY 307 (816)
Q Consensus 228 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 307 (816)
+++|+.|.++.|.++-.--.+....+|+|+.|++..|...........-+..|+.|+|++|++...-.......++.|+.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 34455555555555422222223335555555555553221222223334455555555555543322233445555555
Q ss_pred eeCCCccccccccCCC-----CCCCcCccEEeccCCCCCCCCc--cccCCcccceeecccccc
Q 003488 308 LYLSQNRLSVNTKLDA-----NSTFPKLLKLGLSACNISEFPD--FLRSQDRLEWLQLSENKI 363 (816)
Q Consensus 308 L~L~~n~i~~~~~~~~-----~~~~~~L~~L~l~~~~l~~lp~--~l~~~~~L~~L~l~~n~l 363 (816)
|+++.+.+......+. ...+++|+.|++..|++.+++. .+..+++|+.|.+..|.+
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 5555554443332222 1234555555555555544432 222333444444444443
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.06 E-value=2.2e-10 Score=125.19 Aligned_cols=201 Identities=34% Similarity=0.463 Sum_probs=132.9
Q ss_pred eEeCCCCCCCCCCCchhhccCCCCEEEccCCcCccCCCccccCCC-CccEEEccCCcccCCCCcccCCCCCCcEEECcCC
Q 003488 447 FIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGS-GLVNLILNDNQFEGPLPQSLANCSRLQVLNVANN 525 (816)
Q Consensus 447 ~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N 525 (816)
.++++.|.+.... ........++.|++.+|.+.. ++....... +|+.|++++|++. .+|..++.+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 4556666553222 223334566777777777763 333444443 6777777777777 45566777788888888888
Q ss_pred cCCCCCcccccCCCCCcEEEccCcccccccCCCcccccCCCCceeeCCCCcccccCchHHHhhhhhhhccCCCcccceee
Q 003488 526 RIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQY 605 (816)
Q Consensus 526 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~ 605 (816)
+++.. |...+..+.|+.|++++|++....+ .......|+.+++++|++...+. .
T Consensus 174 ~l~~l-~~~~~~~~~L~~L~ls~N~i~~l~~---~~~~~~~L~~l~~~~N~~~~~~~-~--------------------- 227 (394)
T COG4886 174 DLSDL-PKLLSNLSNLNNLDLSGNKISDLPP---EIELLSALEELDLSNNSIIELLS-S--------------------- 227 (394)
T ss_pred hhhhh-hhhhhhhhhhhheeccCCccccCch---hhhhhhhhhhhhhcCCcceecch-h---------------------
Confidence 87753 3333367777788888887776632 11234447777888775321111 0
Q ss_pred ccccccceeeEEEeecceecccccccceEEEccCCcccccCchhhhCCCCCcEEEccCCcCcccCCccccccCCCCeEeC
Q 003488 606 MHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDL 685 (816)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~L 685 (816)
+..+..+..+.+++|++.. +|..++.++.++.|++++|.++. ++. ++.+.+++.||+
T Consensus 228 --------------------~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~ 284 (394)
T COG4886 228 --------------------LSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDL 284 (394)
T ss_pred --------------------hhhcccccccccCCceeee-ccchhccccccceeccccccccc-ccc-ccccCccCEEec
Confidence 1144555666788888873 47788899999999999999984 444 889999999999
Q ss_pred CCCcccccCccccC
Q 003488 686 SSNRLVGQIPTQLT 699 (816)
Q Consensus 686 s~N~l~~~~p~~l~ 699 (816)
++|.++...|....
T Consensus 285 s~n~~~~~~~~~~~ 298 (394)
T COG4886 285 SGNSLSNALPLIAL 298 (394)
T ss_pred cCccccccchhhhc
Confidence 99999987775544
No 34
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1e-11 Score=119.15 Aligned_cols=180 Identities=21% Similarity=0.252 Sum_probs=123.4
Q ss_pred CCCEEeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCchhhhcCCCCCEEeCCCCCCccccCCcHHHHhhcCCCCC
Q 003488 31 YLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLK 110 (816)
Q Consensus 31 ~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~ 110 (816)
.|++||||+..++...+-..+..|.+|+.|.|.++.+++.+...+++-.+|+.|+++.+. .+...+....+.+|+.|.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s--G~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS--GFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc--ccchhHHHHHHHhhhhHh
Confidence 599999999888765455678899999999999999999899999999999999999862 233356667789999999
Q ss_pred EEeCCCccCCCccchhhhhccCCCCcEEEccCCcCC---CCCCccCCCCCCCCEEEccCCC-CCCCchhhhcCCCCCCEE
Q 003488 111 ELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLI---GPIPASLANLPQLTSLSLSYNH-FSGHIPSFLSHLKQLYYL 186 (816)
Q Consensus 111 ~L~l~~~~~~~~~~~~~~~~l~~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 186 (816)
+|++++|..........+.+..++|+.|+++++.-. ..+..-...+++|..|||++|. ++......|.+++.|++|
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 999999998887766677777788888888876421 1111122446666666666543 333333344555556665
Q ss_pred EccCCcCCCCCCcc---ccCCCCccEEEccc
Q 003488 187 NLEQNNLVGGIPDS---FVNLTQLSFLDLSW 214 (816)
Q Consensus 187 ~L~~n~l~~~~~~~---~~~l~~L~~L~L~~ 214 (816)
.++.|- +.+|.. +...|.|.+||+-+
T Consensus 344 SlsRCY--~i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 344 SLSRCY--DIIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred ehhhhc--CCChHHeeeeccCcceEEEEecc
Confidence 555553 233332 23344444444443
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.99 E-value=1.2e-10 Score=111.84 Aligned_cols=128 Identities=30% Similarity=0.336 Sum_probs=64.8
Q ss_pred CCCCEEEccCCcCCCCCCccccCCCCccEEEcccCCCCcCCcccCCCCCCCcEEECcCCCCCcccchhhhhCCCCccEEE
Q 003488 181 KQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIH 260 (816)
Q Consensus 181 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 260 (816)
+.|+++||++|.|+ .+.++..-.|.++.|++++|.+.... .++.+++|+.||+++|.++ .+..|-.. +-+.+.|.
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~K-LGNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLK-LGNIKTLK 358 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhhHhh-hcCEeeee
Confidence 44556666666554 33344455556666666666655321 2555556666666666554 44333333 55555555
Q ss_pred ccCCcCCccCchhhhcCCCCCEEEcccCCCcCccccccccCCCccceeeCCCccc
Q 003488 261 LRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRL 315 (816)
Q Consensus 261 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i 315 (816)
++.|.+... ..++.+-+|..||+++|+|...-....++++|-|+.+.+.+|.+
T Consensus 359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 555555311 23444455555555555554333334444444444444444433
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.89 E-value=8.8e-10 Score=102.40 Aligned_cols=110 Identities=30% Similarity=0.383 Sum_probs=36.9
Q ss_pred ccCCCCccEEEcccCCCCcCCcccCC-CCCCCcEEECcCCCCCcccchhhhhCCCCccEEEccCCcCCccCchhh-hcCC
Q 003488 201 FVNLTQLSFLDLSWNQLTGRLPSCLK-GLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTI-FELV 278 (816)
Q Consensus 201 ~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-~~l~ 278 (816)
+.+..++++|+|.+|.+..+ +.+. .+.+|+.|++++|.++ .++. +..++.|++|++++|.++.. ...+ ..++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~~--l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp 88 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLEG--LPGLPRLKTLDLSNNRISSI-SEGLDKNLP 88 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS---S--CHHHHHH-T
T ss_pred cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCc-cccC--ccChhhhhhcccCCCCCCcc-ccchHHhCC
Confidence 44556778888888888743 2354 5678888888888887 5543 33378888888888888743 3333 3577
Q ss_pred CCCEEEcccCCCcCccccccccCCCccceeeCCCcccc
Q 003488 279 NLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLS 316 (816)
Q Consensus 279 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~ 316 (816)
+|++|++++|++...-....+..+++|+.|++.+|++.
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 88888888887775444556667777777777777653
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.89 E-value=1.2e-09 Score=101.48 Aligned_cols=130 Identities=29% Similarity=0.330 Sum_probs=50.7
Q ss_pred hcCCCCCCEEEccCCcCCCCCCcccc-CCCCccEEEcccCCCCcCCcccCCCCCCCcEEECcCCCCCcccchhhhhCCCC
Q 003488 177 LSHLKQLYYLNLEQNNLVGGIPDSFV-NLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPY 255 (816)
Q Consensus 177 ~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 255 (816)
+.+..++++|+|.+|.|+.. +.++ .+.+|+.|++++|.+... +.+..+++|++|++++|.++ .+...+...+|+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence 44556789999999998743 3454 578899999999999854 35788899999999999998 666555444899
Q ss_pred ccEEEccCCcCCccC-chhhhcCCCCCEEEcccCCCcCccc--cccccCCCccceeeCC
Q 003488 256 LEVIHLRDNRFTGSI-PSTIFELVNLTSIRLSSNNLSGHIE--LCMFARLKNLQYLYLS 311 (816)
Q Consensus 256 L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~~l~~L~~L~L~ 311 (816)
|++|++++|++...- -..+..+++|++|++.+|.+...-. ...+..+|+|+.||-.
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 999999999987422 2456788999999999998874322 1234566777776653
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.89 E-value=1.2e-09 Score=83.28 Aligned_cols=60 Identities=43% Similarity=0.555 Sum_probs=38.8
Q ss_pred CCcEEEccCCcCcccCCccccccCCCCeEeCCCCcccccCccccCCcCcCCeEeCccCcc
Q 003488 655 LLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQL 714 (816)
Q Consensus 655 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 714 (816)
+|++|++++|+++...+..|.++++|++|++++|+++...|..|..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 456666666666655445666666666666666666666666666666666666666654
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.87 E-value=3.2e-10 Score=123.93 Aligned_cols=225 Identities=24% Similarity=0.246 Sum_probs=122.3
Q ss_pred ccCCCCCCeEeCCCCCCCCCCCchhhccCCCCEEEccCCcCccCCCccccCCCCccEEEccCCcccCCCCcccCCCCCCc
Q 003488 439 FCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQ 518 (816)
Q Consensus 439 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 518 (816)
+..+.+|+.+++.+|.+... ...+..+++|++|++++|.++... .+..++.|+.|++++|.++.. ..+..++.|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhh
Confidence 34455566666666655522 211344555555555555555332 233344455555555555421 2333455555
Q ss_pred EEECcCCcCCCCCc-ccccCCCCCcEEEccCcccccccCCCcccccCCCCceeeCCCCcccccCchHHHhhhhhhhccCC
Q 003488 519 VLNVANNRIDDTFP-HWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSN 597 (816)
Q Consensus 519 ~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~ 597 (816)
.+++++|++...-+ . ...+.+++.+++.+|.+.... ....+..+..+++..|.++..-+..
T Consensus 166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~----~~~~~~~l~~~~l~~n~i~~~~~l~------------- 227 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE----GLDLLKKLVLLSLLDNKISKLEGLN------------- 227 (414)
T ss_pred cccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc----chHHHHHHHHhhcccccceeccCcc-------------
Confidence 55555555544332 1 234444555555555444331 1122222333344444443211100
Q ss_pred CcccceeeccccccceeeEEEeecceecccccc--cceEEEccCCcccccCchhhhCCCCCcEEEccCCcCcccCCcccc
Q 003488 598 TSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILS--IFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLR 675 (816)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~ 675 (816)
.+. +|+.+++++|++. .++..+..+..+..|+++.|++... ..+.
T Consensus 228 ------------------------------~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~ 274 (414)
T KOG0531|consen 228 ------------------------------ELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLE 274 (414)
T ss_pred ------------------------------cchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--cccc
Confidence 111 3677888888887 4446677788888899999888755 4456
Q ss_pred ccCCCCeEeCCCCccccc---Cccc-cCCcCcCCeEeCccCccccCCC
Q 003488 676 NLTVLESLDLSSNRLVGQ---IPTQ-LTSLNFLSKLNLSHNQLEGPIP 719 (816)
Q Consensus 676 ~l~~L~~L~Ls~N~l~~~---~p~~-l~~l~~L~~L~ls~N~l~g~ip 719 (816)
....+..+.++.|.+... .... ....+.++...+.+|+.....+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 275 RLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred ccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 677788888888887732 1221 4566778888888887776554
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.82 E-value=2.7e-09 Score=81.33 Aligned_cols=61 Identities=34% Similarity=0.484 Sum_probs=56.7
Q ss_pred ccceEEEccCCcccccCchhhhCCCCCcEEEccCCcCcccCCccccccCCCCeEeCCCCcc
Q 003488 630 SIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRL 690 (816)
Q Consensus 630 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l 690 (816)
++|+.|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4678999999999977778999999999999999999988888999999999999999986
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.76 E-value=1.1e-08 Score=119.37 Aligned_cols=271 Identities=24% Similarity=0.225 Sum_probs=148.3
Q ss_pred CcEEEEECCCCCCccccCCccccccCCCCCEEeCCCCC--CCCCCCCccccCCCCCCEEECCCCCCCccCchhhhcCCCC
Q 003488 4 GQVIGLDLSCSWLHGSIPSNSSLFLLPYLETLNLGSND--FNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKM 81 (816)
Q Consensus 4 ~~l~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~--~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L 81 (816)
..++++.+-++.+. .++. -...+.|++|-+..|. +... ..+.|..++.|++|||++|.--+.+|..++.+-+|
T Consensus 523 ~~~rr~s~~~~~~~-~~~~---~~~~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAG---SSENPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred hheeEEEEeccchh-hccC---CCCCCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 34666666666653 1222 1345578888877775 3331 33457788889999998887666888888888889
Q ss_pred CEEeCCCCCCccccCCcHHHHhhcCCCCCEEeCCCccCCCccchhhhhccCCCCcEEEccCCcCC--CCCCccCCCCCCC
Q 003488 82 LSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLI--GPIPASLANLPQL 159 (816)
Q Consensus 82 ~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~L~~n~l~--~~~~~~l~~l~~L 159 (816)
|+|++++..+..++ ..+++++.|.+|++..+......+. ....+ ++|++|.+...... ...-..+.++.+|
T Consensus 598 ryL~L~~t~I~~LP-----~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L-~~Lr~L~l~~s~~~~~~~~l~el~~Le~L 670 (889)
T KOG4658|consen 598 RYLDLSDTGISHLP-----SGLGNLKKLIYLNLEVTGRLESIPG-ILLEL-QSLRVLRLPRSALSNDKLLLKELENLEHL 670 (889)
T ss_pred hcccccCCCccccc-----hHHHHHHhhheeccccccccccccc-hhhhc-ccccEEEeeccccccchhhHHhhhcccch
Confidence 98888888766544 3477888888888887765444432 33445 77888877654311 1122233444555
Q ss_pred CEEEccCCCCCCCchhhhcCCCCCC----EEEccCCcCCCCCCccccCCCCccEEEcccCCCCcCCcccCCC------CC
Q 003488 160 TSLSLSYNHFSGHIPSFLSHLKQLY----YLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKG------LR 229 (816)
Q Consensus 160 ~~L~Ls~n~l~~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~------l~ 229 (816)
+.+....... .+-..+..+..|+ .+.+.++... ..+..+..+.+|+.|.+.++.+.......... ++
T Consensus 671 ~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~ 747 (889)
T KOG4658|consen 671 ENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFP 747 (889)
T ss_pred hhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHH
Confidence 5554433222 1111222222222 2222222222 34455677778888888877765332222111 12
Q ss_pred CCcEEECcCCCCCcccchhhhhCCCCccEEEccCCcCCccCchhhhcCCCCCEEEcccCCCc
Q 003488 230 NLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLS 291 (816)
Q Consensus 230 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 291 (816)
++..+...++... ..+.+..- .|+|+.|.+..+.....+.+....+..+..+.+..+.+.
T Consensus 748 ~l~~~~~~~~~~~-r~l~~~~f-~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 748 NLSKVSILNCHML-RDLTWLLF-APHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE 807 (889)
T ss_pred HHHHHHhhccccc-cccchhhc-cCcccEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence 2333333333222 12222211 577777777777665555555555555555444444443
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.70 E-value=2.8e-09 Score=116.47 Aligned_cols=248 Identities=27% Similarity=0.257 Sum_probs=142.3
Q ss_pred CCCccceeeCCCccccccccCCCCCCCcCccEEeccCCCCCCCCccccCCcccceeecccccccCCCCchhhccCCCccc
Q 003488 301 RLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLY 380 (816)
Q Consensus 301 ~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~ 380 (816)
.+..++.+.+..|.+.. .......+.+++.+++.+|.+..+...+..+++|++|++++|.|+...+-. .++.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~----~l~~L~ 143 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLS----TLTLLK 143 (414)
T ss_pred HhHhHHhhccchhhhhh--hhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchh----hccchh
Confidence 34455555566664432 112233455566666666666555544455555555555555555433322 223345
Q ss_pred eEEcCCCcCCCCCCCCCCCCCEEecCCCcCCCcCCCCCCCccEEEccCCccccccc-ccccCCCCCCeEeCCCCCCCCCC
Q 003488 381 NLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIP-CSFCTAAPIEFIDLSNNSLSGPI 459 (816)
Q Consensus 381 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~ls~n~l~~~~ 459 (816)
.|++++|.++.+.... .++.|+.+++++|.++..-+ . ...+.+++.+++.+|.+..
T Consensus 144 ~L~l~~N~i~~~~~~~--------------------~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~-- 200 (414)
T KOG0531|consen 144 ELNLSGNLISDISGLE--------------------SLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE-- 200 (414)
T ss_pred hheeccCcchhccCCc--------------------cchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--
Confidence 5555555554444331 24555555566666554433 2 3556677778888887752
Q ss_pred CchhhccCCCCEEEccCCcCccCCCccccCCC--CccEEEccCCcccCCCCcccCCCCCCcEEECcCCcCCCCCcccccC
Q 003488 460 PECLVDSITLIWLDLHLNSFNGSIPQISANGS--GLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQ 537 (816)
Q Consensus 460 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 537 (816)
...+..+..+..+++..|.++..-+ +..+. .|+.+++.+|++. ..+..+..+..+..|++.+|++...- .+..
T Consensus 201 i~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~ 275 (414)
T KOG0531|consen 201 IEGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLER 275 (414)
T ss_pred ccchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc--cccc
Confidence 2233334445555777777764322 22223 3788888888887 33356777888888899888876532 3455
Q ss_pred CCCCcEEEccCcccccccCCCcc--cccCCCCceeeCCCCcccccCc
Q 003488 538 LPELLVLILRSNKFYGLIGNTDA--RVIFPKLRILDLSRNEFTGVLP 582 (816)
Q Consensus 538 l~~L~~L~L~~n~l~~~~~~~~~--~~~~~~L~~L~Ls~N~l~~~~p 582 (816)
.+.+..+....|++......... ....+.++.+.+..|++....+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 276 LPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred cchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 66777777777777643221222 4566788888888888876554
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.69 E-value=1.6e-08 Score=117.88 Aligned_cols=203 Identities=27% Similarity=0.300 Sum_probs=108.7
Q ss_pred CCCCEEEccCCCCCCCchhhhcCCCCCCEEEccCCc--CCCCCCccccCCCCccEEEcccCCCCcCCcccCCCCCCCcEE
Q 003488 157 PQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNN--LVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTL 234 (816)
Q Consensus 157 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 234 (816)
...+...+.+|.+... +.. ..+++|++|-+.+|. +.....+.|..++.|++||+++|.-.+.+|..++.+-+|++|
T Consensus 523 ~~~rr~s~~~~~~~~~-~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHI-AGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchhhc-cCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 4555566655555422 222 123456666666664 333333446667777777777666555677777777777777
Q ss_pred ECcCCCCCcccchhhhhCCCCccEEEccCCcCCccCchhhhcCCCCCEEEcccCCCc-CccccccccCCCccceeeCCCc
Q 003488 235 RLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLS-GHIELCMFARLKNLQYLYLSQN 313 (816)
Q Consensus 235 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~~l~~L~~L~L~~n 313 (816)
++++..+. .+|..+.. +..|.+|++..+.-...+|.....+++|++|.+...... +......+.++.+|+.+.....
T Consensus 601 ~L~~t~I~-~LP~~l~~-Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGN-LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred cccCCCcc-ccchHHHH-HHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence 77777766 66766655 677777777766655455555566777777776554311 1112223344444444444332
Q ss_pred cccccccCCCCCCCcCcc----EEeccCCCCCCCCccccCCcccceeecccccccCC
Q 003488 314 RLSVNTKLDANSTFPKLL----KLGLSACNISEFPDFLRSQDRLEWLQLSENKIYGR 366 (816)
Q Consensus 314 ~i~~~~~~~~~~~~~~L~----~L~l~~~~l~~lp~~l~~~~~L~~L~l~~n~l~~~ 366 (816)
.. .........++|. .+.+.++.....+..+..+.+|+.|.+.++.+...
T Consensus 679 s~---~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~ 732 (889)
T KOG4658|consen 679 SV---LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEI 732 (889)
T ss_pred hh---HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchh
Confidence 11 0001111122222 22222333344445566667777777777766543
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.45 E-value=2.3e-09 Score=115.00 Aligned_cols=58 Identities=36% Similarity=0.408 Sum_probs=29.1
Q ss_pred CCcEEECcCCcCCCCCcccccCCCCCcEEEccCcccccccCCCcccccCCCCceeeCCCCccc
Q 003488 516 RLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFT 578 (816)
Q Consensus 516 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~ 578 (816)
.|...+.+.|++.- ..+.+.-++.|+.|+|++|+++.. +.+..++.|++|||++|.++
T Consensus 165 ~L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v----~~Lr~l~~LkhLDlsyN~L~ 222 (1096)
T KOG1859|consen 165 KLATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKV----DNLRRLPKLKHLDLSYNCLR 222 (1096)
T ss_pred hHhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhh----HHHHhcccccccccccchhc
Confidence 34455555555542 223344455555555555555544 23444555555555555554
No 45
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.45 E-value=9.8e-09 Score=87.42 Aligned_cols=59 Identities=24% Similarity=0.384 Sum_probs=35.5
Q ss_pred cceEEEccCCcccccCchhhhCCCCCcEEEccCCcCcccCCccccccCCCCeEeCCCCccc
Q 003488 631 IFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLV 691 (816)
Q Consensus 631 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 691 (816)
.++.++|++|.|+ .+|.++..++.|+.||++.|.+. ..|..+..|.+|..||.-+|.+.
T Consensus 78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 3445566666666 45666666666666666666665 44555555666666666666555
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.34 E-value=1.1e-07 Score=90.57 Aligned_cols=161 Identities=25% Similarity=0.264 Sum_probs=81.7
Q ss_pred cCCCCCCCCEEEccCCCCCCCchh----hhcCCCCCCEEEccCCcCCCCCCc-------------cccCCCCccEEEccc
Q 003488 152 SLANLPQLTSLSLSYNHFSGHIPS----FLSHLKQLYYLNLEQNNLVGGIPD-------------SFVNLTQLSFLDLSW 214 (816)
Q Consensus 152 ~l~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~-------------~~~~l~~L~~L~L~~ 214 (816)
++.+||+|+..+||.|.+....|. .+++-+.|++|.+++|.+--.--. -.++-|.|++.+...
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 344556666666666655543332 334555666666666654311100 113446677777777
Q ss_pred CCCCcCCcc-----cCCCCCCCcEEECcCCCCCcc-----cchhhhhCCCCccEEEccCCcCCcc----CchhhhcCCCC
Q 003488 215 NQLTGRLPS-----CLKGLRNLVTLRLSGNSLNGT-----IPSWLFTVLPYLEVIHLRDNRFTGS----IPSTIFELVNL 280 (816)
Q Consensus 215 n~l~~~~~~-----~l~~l~~L~~L~l~~n~l~~~-----~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L 280 (816)
|++.. .+. .+.....|+++.+..|.|.-. +...++. +.+|+.||+..|.++-. +...+...+.|
T Consensus 167 NRlen-gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y-~~~LevLDlqDNtft~~gS~~La~al~~W~~l 244 (388)
T COG5238 167 NRLEN-GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFY-SHSLEVLDLQDNTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred chhcc-CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHH-hCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence 76652 221 123335677777777766421 0112222 56777777777766522 22333445566
Q ss_pred CEEEcccCCCcCccccccc-----cCCCccceeeCCCcc
Q 003488 281 TSIRLSSNNLSGHIELCMF-----ARLKNLQYLYLSQNR 314 (816)
Q Consensus 281 ~~L~L~~n~l~~~~~~~~~-----~~l~~L~~L~L~~n~ 314 (816)
+.|.+..|-++..-....+ ...++|..|...+|.
T Consensus 245 rEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 245 RELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred hhccccchhhccccHHHHHHHhhhhcCCCccccccchhh
Confidence 7777777765532221111 123556666666654
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.31 E-value=1.6e-08 Score=108.73 Aligned_cols=200 Identities=31% Similarity=0.325 Sum_probs=131.2
Q ss_pred CCCCCEEeCCCccCCCccchhhhhccCCCCcEEEccCCcCCCCCCccCCCC-CCCCEEEccCCCCCCCchhhhcC-----
Q 003488 106 LTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANL-PQLTSLSLSYNHFSGHIPSFLSH----- 179 (816)
Q Consensus 106 l~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~----- 179 (816)
+++++.|.+-...-.+......+..+ .+|++|.+.+|.+... ..+..+ .+|++|..++ .+. .....|..
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF-~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~-Sl~-Al~~v~ascggd~ 157 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPF-RSLRVLELRGCDLSTA--KGLQELRHQLEKLICHN-SLD-ALRHVFASCGGDI 157 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccc-cceeeEEecCcchhhh--hhhHHHHHhhhhhhhhc-cHH-HHHHHHHHhcccc
Confidence 44444444443332222212255666 7888888888877531 112111 2455553332 211 01111111
Q ss_pred -----CCCCCEEEccCCcCCCCCCccccCCCCccEEEcccCCCCcCCcccCCCCCCCcEEECcCCCCCcccchhhhhCCC
Q 003488 180 -----LKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLP 254 (816)
Q Consensus 180 -----l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 254 (816)
...|...+.++|.+. ....++.-++.|+.|+|++|+++... .+..|++|++||+++|.+. .+|..-..++.
T Consensus 158 ~ns~~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~ 233 (1096)
T KOG1859|consen 158 SNSPVWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK 233 (1096)
T ss_pred ccchhhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh
Confidence 135777888888876 45567788889999999999988543 6788899999999999887 77764433344
Q ss_pred CccEEEccCCcCCccCchhhhcCCCCCEEEcccCCCcCccccccccCCCccceeeCCCccccc
Q 003488 255 YLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSV 317 (816)
Q Consensus 255 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~ 317 (816)
|+.|.+++|.++.. ..+.++.+|+.||+++|-+.+.-....+..+..|+.|+|.+|.+..
T Consensus 234 -L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 234 -LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred -heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 89999999988733 4567888999999999988876666667778889999999997643
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=2.8e-08 Score=95.93 Aligned_cols=133 Identities=23% Similarity=0.199 Sum_probs=76.7
Q ss_pred CCcEEECcCCCCCcccchhhhhCCCCccEEEccCCcCCccCchhhhcCCCCCEEEcccCC-CcCccccccccCCCcccee
Q 003488 230 NLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNN-LSGHIELCMFARLKNLQYL 308 (816)
Q Consensus 230 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L 308 (816)
.|+++||++..++..--..+.+.+.+|+.|.+.++++.+.+...++.-.+|+.|+++.+. ++..-..-.+.+|+.|++|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466667766666533333444456777777777777776666667777777777777653 2221112345677777777
Q ss_pred eCCCccccccccCCCCC-CCcCccEEeccCCC----CCCCCccccCCcccceeeccccc
Q 003488 309 YLSQNRLSVNTKLDANS-TFPKLLKLGLSACN----ISEFPDFLRSQDRLEWLQLSENK 362 (816)
Q Consensus 309 ~L~~n~i~~~~~~~~~~-~~~~L~~L~l~~~~----l~~lp~~l~~~~~L~~L~l~~n~ 362 (816)
++++|.+.......... .-++|+.|+++++. ...+......+++|.+||+++|.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV 324 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence 77777543222111111 23466677777662 12333345567777777777664
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=2e-07 Score=90.11 Aligned_cols=84 Identities=35% Similarity=0.366 Sum_probs=40.9
Q ss_pred CCCcEEEccCCcCCC--CCCccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEccCCcCCCC-CCccccCCCCccE
Q 003488 133 SSLSYLHLTGCNLIG--PIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGG-IPDSFVNLTQLSF 209 (816)
Q Consensus 133 ~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~ 209 (816)
+.++++||.+|.++. .+...+.++|.|+.|+|+.|++...+...-..+.+|++|.|.+..+... ....+..+|.++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 444444444444431 1223344556666666666655533322113445666666666555422 2223455666666
Q ss_pred EEcccCC
Q 003488 210 LDLSWNQ 216 (816)
Q Consensus 210 L~L~~n~ 216 (816)
|.++.|.
T Consensus 151 lHmS~N~ 157 (418)
T KOG2982|consen 151 LHMSDNS 157 (418)
T ss_pred hhhccch
Confidence 6666663
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=2.9e-07 Score=89.00 Aligned_cols=187 Identities=23% Similarity=0.269 Sum_probs=89.5
Q ss_pred CCCCCCEEEccCCcCCC--CCCccccCCCCccEEEcccCCCCcCCcccCCCCCCCcEEECcCCCCCcccchhhhhCCCCc
Q 003488 179 HLKQLYYLNLEQNNLVG--GIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYL 256 (816)
Q Consensus 179 ~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 256 (816)
.++.++++||.+|.++. .+...+.++|.|++|+++.|++...+...=....+|++|-|.+..+.-.-.......+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 34556666666665541 2223345566666666666665532221112445566666655544322223333345666
Q ss_pred cEEEccCCcCCccC--chhhhc-CCCCCEEEcccCCCcCccccc-cccCCCccceeeCCCccccccccCCCCCCCcCccE
Q 003488 257 EVIHLRDNRFTGSI--PSTIFE-LVNLTSIRLSSNNLSGHIELC-MFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLK 332 (816)
Q Consensus 257 ~~L~l~~n~l~~~~--~~~l~~-l~~L~~L~L~~n~l~~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~ 332 (816)
++|.++.|.+.... ...... -+.++++....|...-..... .-.-++++..+.+..|.+...........+|.+..
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 66666666322100 000111 123344444333322111100 11234566666666665554444444555666666
Q ss_pred EeccCCCCCCCC--ccccCCcccceeecccccccC
Q 003488 333 LGLSACNISEFP--DFLRSQDRLEWLQLSENKIYG 365 (816)
Q Consensus 333 L~l~~~~l~~lp--~~l~~~~~L~~L~l~~n~l~~ 365 (816)
|.++.+++.++. +.+..++.|..|.++++.+.+
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 667666666543 245566667777776666553
No 51
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.21 E-value=5.2e-08 Score=98.66 Aligned_cols=278 Identities=20% Similarity=0.121 Sum_probs=127.0
Q ss_pred CCCEEeCCCCCCCCC-CCCccccCCCCCCEEECCCCC-CCccCchhh-hcCCCCCEEeCCCCCCccccCCcHHHHhhcCC
Q 003488 31 YLETLNLGSNDFNSS-LISSGFGRLISLTHLNLSNSY-FSGQIPSEI-SQLSKMLSLDLSKNDEVRIESPVWKGLIENLT 107 (816)
Q Consensus 31 ~L~~L~Ls~~~~~~~-~~~~~~~~l~~L~~L~Ls~n~-~~~~~~~~l-~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~ 107 (816)
.|+.|.+.++.-.+. .+-....+++++.+|.+.++. +++..-..+ ..+++|++|++..+ ..+.+..+......|+
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c--~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSC--SSITDVSLKYLAEGCR 216 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhccc--chhHHHHHHHHHHhhh
Confidence 466666666643222 122344566777777776664 332222223 35677777777664 1122233333455677
Q ss_pred CCCEEeCCCccC-CCccchhhhhccCCCCcEEEccCCcCCCCCCccC----CCCCCCCEEEccCCC-CCCCc-hhhhcCC
Q 003488 108 KLKELVLSEVDM-STIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASL----ANLPQLTSLSLSYNH-FSGHI-PSFLSHL 180 (816)
Q Consensus 108 ~L~~L~l~~~~~-~~~~~~~~~~~l~~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~Ls~n~-l~~~~-~~~~~~l 180 (816)
+|++++++++.- ++.......... ..++.+.+.+|.=.+ ..++ +.+..+.++++..+. ++... ...-..+
T Consensus 217 kL~~lNlSwc~qi~~~gv~~~~rG~-~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNGVQALQRGC-KELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred hHHHhhhccCchhhcCcchHHhccc-hhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 777777777642 332222222333 445555555542110 1111 233445555554442 22211 1112345
Q ss_pred CCCCEEEccCCcCCCC-CCcc-ccCCCCccEEEcccCCC-CcCCcccC-CCCCCCcEEECcCCCCCccc-chhhhhCCCC
Q 003488 181 KQLYYLNLEQNNLVGG-IPDS-FVNLTQLSFLDLSWNQL-TGRLPSCL-KGLRNLVTLRLSGNSLNGTI-PSWLFTVLPY 255 (816)
Q Consensus 181 ~~L~~L~L~~n~l~~~-~~~~-~~~l~~L~~L~L~~n~l-~~~~~~~l-~~l~~L~~L~l~~n~l~~~~-~~~~~~~l~~ 255 (816)
..|+.|+.+++.-.+. .-.+ -.++++|+.+-++.++- +..--..+ .+++.|+.+++..+...... -..+..+++.
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 5666666665532111 1111 24456666666666642 11100111 24455666666655432111 1122334566
Q ss_pred ccEEEccCCcCC-ccC----chhhhcCCCCCEEEcccCCCcCccccccccCCCccceeeCCCc
Q 003488 256 LEVIHLRDNRFT-GSI----PSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQN 313 (816)
Q Consensus 256 L~~L~l~~n~l~-~~~----~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 313 (816)
|+.+.++.|... +.. ...-.....+..+.++++.....-....+..+++|+.+++.++
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 666666655432 110 0111233456666666665543333344555666666665555
No 52
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.07 E-value=2.4e-07 Score=94.00 Aligned_cols=86 Identities=23% Similarity=0.290 Sum_probs=45.3
Q ss_pred CCCEEECCCCCCCccCc--hhhhcCCCCCEEeCCCCCCccccCCcHHHHhhcCCCCCEEeCCCc-cCCCccchhhhhccC
Q 003488 56 SLTHLNLSNSYFSGQIP--SEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEV-DMSTIVLDYSLTNLS 132 (816)
Q Consensus 56 ~L~~L~Ls~n~~~~~~~--~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~l~ 132 (816)
.|+.|.+.++.-.+.-+ ..-.+++++++|.+.++. .+.+..+...-+.|++|+++++..| .++..... .+..-+
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~--~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk-~la~gC 215 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK--KITDSSLLSLARYCRKLRHLNLHSCSSITDVSLK-YLAEGC 215 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcce--eccHHHHHHHHHhcchhhhhhhcccchhHHHHHH-HHHHhh
Confidence 46666666665332211 223456666666666653 4444455555556666666666663 33433333 333333
Q ss_pred CCCcEEEccCCc
Q 003488 133 SSLSYLHLTGCN 144 (816)
Q Consensus 133 ~~L~~L~L~~n~ 144 (816)
++|++|++++|.
T Consensus 216 ~kL~~lNlSwc~ 227 (483)
T KOG4341|consen 216 RKLKYLNLSWCP 227 (483)
T ss_pred hhHHHhhhccCc
Confidence 666666666653
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.97 E-value=5.3e-06 Score=57.56 Aligned_cols=36 Identities=42% Similarity=0.643 Sum_probs=17.0
Q ss_pred CCcEEEccCCcCcccCCccccccCCCCeEeCCCCccc
Q 003488 655 LLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLV 691 (816)
Q Consensus 655 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 691 (816)
+|++|++++|+|+ .+|..+++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3455555555554 33444555555555555555544
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.87 E-value=6.5e-05 Score=78.83 Aligned_cols=57 Identities=18% Similarity=0.183 Sum_probs=32.1
Q ss_pred hhccCCCCEEEccCCcCccCCCccccCCCCccEEEccCCcccCCCCcccCCCCCCcEEECcCC
Q 003488 463 LVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANN 525 (816)
Q Consensus 463 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N 525 (816)
+..+..++.|++++|.++ .+|. -.++|+.|.+++|.--..+|..+ .++|+.|++++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 334567777777777665 3342 12357777776643323445433 246666666666
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.86 E-value=5.6e-07 Score=76.95 Aligned_cols=113 Identities=29% Similarity=0.408 Sum_probs=69.9
Q ss_pred CCcEEEccCCcCCCCCCc---cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEccCCcCCCCCCccccCCCCccEE
Q 003488 134 SLSYLHLTGCNLIGPIPA---SLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFL 210 (816)
Q Consensus 134 ~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 210 (816)
.+..++|+.|.+. .+++ .+.....|+..+|++|.+....+..-.+.+.++.+++++|.++ .+|..++.++.|+.|
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 3445566666543 1222 2334455666677777776433333344557777777777776 556667777777777
Q ss_pred EcccCCCCcCCcccCCCCCCCcEEECcCCCCCcccchhhh
Q 003488 211 DLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLF 250 (816)
Q Consensus 211 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 250 (816)
+++.|.+. ..|..+..+.++-.|+..+|.+. .+|..++
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~ 143 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLF 143 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHh
Confidence 77777776 55666666777777777777665 5665543
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.86 E-value=6.9e-06 Score=93.76 Aligned_cols=108 Identities=24% Similarity=0.274 Sum_probs=46.7
Q ss_pred CCCCEEeCCCccCCCccchhhhhccCCCCcEEEccCCcCCCC-CCccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCE
Q 003488 107 TKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGP-IPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYY 185 (816)
Q Consensus 107 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 185 (816)
.+|++|++++...........++...|+|++|.+.+-.+... ......++++|..||+|+.+++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 345555555443333222223333335555555554333211 112223445555555555555433 44455555555
Q ss_pred EEccCCcCCC-CCCccccCCCCccEEEcccCC
Q 003488 186 LNLEQNNLVG-GIPDSFVNLTQLSFLDLSWNQ 216 (816)
Q Consensus 186 L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~ 216 (816)
|.+.+=.+.. ..-..+.++++|+.||+|...
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 5554443331 111223344555555554443
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.85 E-value=1.1e-05 Score=77.41 Aligned_cols=235 Identities=17% Similarity=0.159 Sum_probs=167.0
Q ss_pred CcEEEEECCCCCCccc----cCCccccccCCCCCEEeCCCCCCCCCC----------CCccccCCCCCCEEECCCCCCCc
Q 003488 4 GQVIGLDLSCSWLHGS----IPSNSSLFLLPYLETLNLGSNDFNSSL----------ISSGFGRLISLTHLNLSNSYFSG 69 (816)
Q Consensus 4 ~~l~~L~L~~~~~~~~----~~~~~~~~~l~~L~~L~Ls~~~~~~~~----------~~~~~~~l~~L~~L~Ls~n~~~~ 69 (816)
..++.++||+|.+..+ +.. .+.+-++|+..+++.-. ++.. +..++.+|++|+..+||.|.|..
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~--~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCN--VIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHH--HHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 4589999999998532 223 56678889999998753 2210 22357789999999999999987
Q ss_pred cCch----hhhcCCCCCEEeCCCCCCccccCCcHHHH---------hhcCCCCCEEeCCCccCCCccchh---hhhccCC
Q 003488 70 QIPS----EISQLSKMLSLDLSKNDEVRIESPVWKGL---------IENLTKLKELVLSEVDMSTIVLDY---SLTNLSS 133 (816)
Q Consensus 70 ~~~~----~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~---------l~~l~~L~~L~l~~~~~~~~~~~~---~~~~l~~ 133 (816)
..|. .+++-+.|++|.+++|.+-.+..+.+... .++-+.|+......|.+....... .+..- .
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh-~ 185 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH-E 185 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh-c
Confidence 7664 45678999999999998877665554422 346789999999999886554321 22222 6
Q ss_pred CCcEEEccCCcCCCCC-----CccCCCCCCCCEEEccCCCCCCC----chhhhcCCCCCCEEEccCCcCCCCCCccc---
Q 003488 134 SLSYLHLTGCNLIGPI-----PASLANLPQLTSLSLSYNHFSGH----IPSFLSHLKQLYYLNLEQNNLVGGIPDSF--- 201 (816)
Q Consensus 134 ~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--- 201 (816)
.|+++.+..|.|...- -..+..+.+|+.|||..|.++.. ...++...+.|++|.+.+|-++.....++
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~ 265 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR 265 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence 8999999999876331 11335678999999999998743 23455667789999999998875443332
Q ss_pred ---cCCCCccEEEcccCCCCcCCccc-----C--CCCCCCcEEECcCCCCC
Q 003488 202 ---VNLTQLSFLDLSWNQLTGRLPSC-----L--KGLRNLVTLRLSGNSLN 242 (816)
Q Consensus 202 ---~~l~~L~~L~L~~n~l~~~~~~~-----l--~~l~~L~~L~l~~n~l~ 242 (816)
...|+|..|...+|.+.+.+-.. + ..++-|..|.+.+|++.
T Consensus 266 f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 266 FNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 24688999999998765422111 1 35677888888888886
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.83 E-value=1.7e-05 Score=55.01 Aligned_cols=37 Identities=27% Similarity=0.453 Sum_probs=32.2
Q ss_pred cceEEEccCCcccccCchhhhCCCCCcEEEccCCcCcc
Q 003488 631 IFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTG 668 (816)
Q Consensus 631 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 668 (816)
+|++|++++|+|+ .+|.++++|++|+.|++++|+++.
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 5789999999999 577789999999999999999984
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.67 E-value=0.0002 Score=75.24 Aligned_cols=13 Identities=15% Similarity=0.253 Sum_probs=6.3
Q ss_pred CCccceeeCCCcc
Q 003488 302 LKNLQYLYLSQNR 314 (816)
Q Consensus 302 l~~L~~L~L~~n~ 314 (816)
+.+++.|++++|.
T Consensus 51 ~~~l~~L~Is~c~ 63 (426)
T PRK15386 51 ARASGRLYIKDCD 63 (426)
T ss_pred hcCCCEEEeCCCC
Confidence 3445555555443
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.67 E-value=7.7e-05 Score=68.76 Aligned_cols=58 Identities=34% Similarity=0.378 Sum_probs=26.2
Q ss_pred CccEEEcccCCCCcCCcccCCCCCCCcEEECcCCCCCcccchhhhhCCCCccEEEccCCcC
Q 003488 206 QLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRF 266 (816)
Q Consensus 206 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 266 (816)
+...+||++|.+... ..|..++.|.+|.+.+|+|+ .|...+...+|+|..|.+.+|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcch
Confidence 344455555554321 23444455555555555554 33333333344444444444443
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.65 E-value=7.5e-05 Score=68.83 Aligned_cols=84 Identities=27% Similarity=0.350 Sum_probs=45.6
Q ss_pred CCCcEEECcCCCCCcccchhhhhCCCCccEEEccCCcCCccCchhhhcCCCCCEEEcccCCCcCccccccccCCCcccee
Q 003488 229 RNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYL 308 (816)
Q Consensus 229 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 308 (816)
.+...+||++|.+. .++. +..++.|..|.+.+|+|+..-|.--.-+++|..|.+.+|.+....+...+..|++|++|
T Consensus 42 d~~d~iDLtdNdl~-~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchh-hccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 34556667766654 3322 33366666666666666644444333445566666666665543333445555555555
Q ss_pred eCCCccc
Q 003488 309 YLSQNRL 315 (816)
Q Consensus 309 ~L~~n~i 315 (816)
.+-+|++
T Consensus 119 tll~Npv 125 (233)
T KOG1644|consen 119 TLLGNPV 125 (233)
T ss_pred eecCCch
Confidence 5555543
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.63 E-value=2.5e-05 Score=89.21 Aligned_cols=152 Identities=21% Similarity=0.263 Sum_probs=108.7
Q ss_pred CCCCEEECCCCC-CCccCchhhh-cCCCCCEEeCCCCCCccccCCcHHHHhhcCCCCCEEeCCCccCCCccchhhhhccC
Q 003488 55 ISLTHLNLSNSY-FSGQIPSEIS-QLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLS 132 (816)
Q Consensus 55 ~~L~~L~Ls~n~-~~~~~~~~l~-~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 132 (816)
.+|++||+++.. +....|..++ .+|+|++|.+++-.+.. ..|.....++++|..||+|+++++... .++++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~---~dF~~lc~sFpNL~sLDIS~TnI~nl~---GIS~L- 194 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN---DDFSQLCASFPNLRSLDISGTNISNLS---GISRL- 194 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecc---hhHHHHhhccCccceeecCCCCccCcH---HHhcc-
Confidence 689999998864 3334556666 47999999998753433 447778889999999999999988773 78888
Q ss_pred CCCcEEEccCCcCCC-CCCccCCCCCCCCEEEccCCCCCCCc--h----hhhcCCCCCCEEEccCCcCCCCCCccc-cCC
Q 003488 133 SSLSYLHLTGCNLIG-PIPASLANLPQLTSLSLSYNHFSGHI--P----SFLSHLKQLYYLNLEQNNLVGGIPDSF-VNL 204 (816)
Q Consensus 133 ~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~--~----~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l 204 (816)
++|++|.+.+=.+.. ..-..+.++++|+.||+|........ . +.-..+++||.||.+++.+.+..-+.+ ...
T Consensus 195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH 274 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSH 274 (699)
T ss_pred ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhC
Confidence 899999988766653 22235678999999999986554221 1 223468999999999988875443333 345
Q ss_pred CCccEEEcc
Q 003488 205 TQLSFLDLS 213 (816)
Q Consensus 205 ~~L~~L~L~ 213 (816)
++|+.+..-
T Consensus 275 ~~L~~i~~~ 283 (699)
T KOG3665|consen 275 PNLQQIAAL 283 (699)
T ss_pred ccHhhhhhh
Confidence 556555443
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.43 E-value=0.00039 Score=62.35 Aligned_cols=58 Identities=19% Similarity=0.205 Sum_probs=18.2
Q ss_pred CCCCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEccCCcCCCCCCccccCCCCccEEEc
Q 003488 153 LANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDL 212 (816)
Q Consensus 153 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 212 (816)
|.++++|+.+.+.. .+.......|..+++|+.+.+.++ +......+|.++++++.+.+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~ 65 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITF 65 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccc
Confidence 34444444444432 233222333444444444444332 32222333444434444444
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.38 E-value=0.0005 Score=61.64 Aligned_cols=123 Identities=21% Similarity=0.252 Sum_probs=50.9
Q ss_pred hhhcCCCCCCEEEccCCcCCCCCCccccCCCCccEEEcccCCCCcCCcccCCCCCCCcEEECcCCCCCcccchhhhhCCC
Q 003488 175 SFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLP 254 (816)
Q Consensus 175 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 254 (816)
.+|..+++|+.+.+.. .+......+|.++++|+.+.+..+ +.......|.++++++.+.+.+ .+. .++...+..++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccc
Confidence 3455666666666653 344444455666666666666554 4444445566666666666654 332 44455555566
Q ss_pred CccEEEccCCcCCccCchhhhcCCCCCEEEcccCCCcCccccccccCCCcc
Q 003488 255 YLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNL 305 (816)
Q Consensus 255 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 305 (816)
+|+.+++..+ +.......+.++ +++.+.+.. .+. .++...|.++++|
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l 128 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKL 128 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG-----
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccC
Confidence 6666666544 333333445554 666666554 222 3444556655554
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.16 E-value=7.6e-05 Score=84.27 Aligned_cols=114 Identities=25% Similarity=0.236 Sum_probs=49.5
Q ss_pred CCCCCEEeCCCCCCccccCCcHHHHhhcCCCCCEEeCCCc-cCCCccc--hhhhhccCCCCcEEEccCCc-CCCCCCccC
Q 003488 78 LSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEV-DMSTIVL--DYSLTNLSSSLSYLHLTGCN-LIGPIPASL 153 (816)
Q Consensus 78 l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~--~~~~~~l~~~L~~L~L~~n~-l~~~~~~~l 153 (816)
++.|+.|.+..+.. +....+......+++|++|+++.+ ....... ...+...+++|+.|+++.+. ++...-..+
T Consensus 187 ~~~L~~l~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSK--ITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred CchhhHhhhccccc--CChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 45555555554411 111223344555556666665542 1111111 00122222556666666555 332222222
Q ss_pred CC-CCCCCEEEccCCC-CCCCch-hhhcCCCCCCEEEccCCcC
Q 003488 154 AN-LPQLTSLSLSYNH-FSGHIP-SFLSHLKQLYYLNLEQNNL 193 (816)
Q Consensus 154 ~~-l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n~l 193 (816)
+. +++|++|.+.++. ++...- .....++.|++|+++++..
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 22 5566666655554 332211 2234455666666665544
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.89 E-value=0.00088 Score=64.82 Aligned_cols=91 Identities=22% Similarity=0.242 Sum_probs=63.6
Q ss_pred ccccCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEECCCC--CCCccCchhhhcCCCCCEEeCCCCCCccccCCcHHHH
Q 003488 25 SLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNS--YFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGL 102 (816)
Q Consensus 25 ~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~Ls~n--~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~ 102 (816)
-.-.+..|+.|.+.+..++.. ..+-.+++|+.|.++.| ++.+.++....++++|++|++++|++..+... .-
T Consensus 38 l~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl---~p 111 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL---RP 111 (260)
T ss_pred ccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc---ch
Confidence 344677788888887776542 34667889999999999 66666666667779999999999977653321 12
Q ss_pred hhcCCCCCEEeCCCccCCC
Q 003488 103 IENLTKLKELVLSEVDMST 121 (816)
Q Consensus 103 l~~l~~L~~L~l~~~~~~~ 121 (816)
++.+.+|..|++..|..+.
T Consensus 112 l~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTN 130 (260)
T ss_pred hhhhcchhhhhcccCCccc
Confidence 5566677777777765544
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.68 E-value=0.00044 Score=78.07 Aligned_cols=239 Identities=24% Similarity=0.211 Sum_probs=133.5
Q ss_pred cCCCCCEEeCCCCCC-CCCCCCccccCCCCCCEEECCCC-CCCccCc----hhhhcCCCCCEEeCCCCCCccccCCcHHH
Q 003488 28 LLPYLETLNLGSNDF-NSSLISSGFGRLISLTHLNLSNS-YFSGQIP----SEISQLSKMLSLDLSKNDEVRIESPVWKG 101 (816)
Q Consensus 28 ~l~~L~~L~Ls~~~~-~~~~~~~~~~~l~~L~~L~Ls~n-~~~~~~~----~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~ 101 (816)
.++.|+.|.+..+.- ....+-.....++.|+.|+++++ ......+ .....+++|+.|+++++.. +.+..+..
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~--isd~~l~~ 263 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGL--VTDIGLSA 263 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhc--cCchhHHH
Confidence 478899998888743 32212345668899999999873 2211212 2344678999999988753 33455555
Q ss_pred HhhcCCCCCEEeCCCcc-CCCccchhhhhccCCCCcEEEccCCcCCCC--CCccCCCCCCCCEEEccCCCCCCCchhhhc
Q 003488 102 LIENLTKLKELVLSEVD-MSTIVLDYSLTNLSSSLSYLHLTGCNLIGP--IPASLANLPQLTSLSLSYNHFSGHIPSFLS 178 (816)
Q Consensus 102 ~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~l~~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 178 (816)
....|++|++|.+..+. +++.... .+...++.|++|++++|..... +.....++++++.|.+....-
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~-~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~--------- 333 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLV-SIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG--------- 333 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHH-HHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC---------
Confidence 55668999999988887 5777666 4444448899999998865421 222234466666655433221
Q ss_pred CCCCCCEEEccCCcCC---CCCCccccCCCCccEEEcccCCCCcCC-cccCCCCCCCcEEECcCCCCCcccchhhhhCCC
Q 003488 179 HLKQLYYLNLEQNNLV---GGIPDSFVNLTQLSFLDLSWNQLTGRL-PSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLP 254 (816)
Q Consensus 179 ~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 254 (816)
+..++.+.+...... .........+++++.+.+..+...... ...+.+++.|. ..+... .....
T Consensus 334 -c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~----------~~~~~ 401 (482)
T KOG1947|consen 334 -CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR----------LCRSD 401 (482)
T ss_pred -CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH----------hccCC
Confidence 344444444433221 122233466777777777777633222 23345555552 211111 11122
Q ss_pred CccEEEccCCcCCc-cCchhhhc-CCCCCEEEcccCCC
Q 003488 255 YLEVIHLRDNRFTG-SIPSTIFE-LVNLTSIRLSSNNL 290 (816)
Q Consensus 255 ~L~~L~l~~n~l~~-~~~~~l~~-l~~L~~L~L~~n~l 290 (816)
.++.|+++.+.... ..-..... +..++.+++.++..
T Consensus 402 ~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 402 SLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred ccceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence 26777777765431 11111111 55666666666643
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.00013 Score=70.54 Aligned_cols=88 Identities=23% Similarity=0.214 Sum_probs=61.9
Q ss_pred cCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCchhhhcCCCCCEEeCCCCCCccccCCcHHHHhhcCC
Q 003488 28 LLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLT 107 (816)
Q Consensus 28 ~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~ 107 (816)
.+.+.+.|+..+|++++. ....+|+.|++|.||-|.|+..-| +..|++|+.|.|..|.|.++++ -..+++++
T Consensus 17 dl~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldE---L~YLknlp 88 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDE---LEYLKNLP 88 (388)
T ss_pred HHHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHH---HHHHhcCc
Confidence 456677888888887664 234578888888888888874433 6678888888888887766543 23366777
Q ss_pred CCCEEeCCCccCCCcc
Q 003488 108 KLKELVLSEVDMSTIV 123 (816)
Q Consensus 108 ~L~~L~l~~~~~~~~~ 123 (816)
+|+.|.|..|...+..
T Consensus 89 sLr~LWL~ENPCc~~a 104 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEA 104 (388)
T ss_pred hhhhHhhccCCccccc
Confidence 7777777777666554
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.46 E-value=0.0022 Score=62.12 Aligned_cols=66 Identities=26% Similarity=0.336 Sum_probs=33.6
Q ss_pred CCCCCcEEECcCC--cCCCCCcccccCCCCCcEEEccCcccccccCCCcccccCCCCceeeCCCCcccc
Q 003488 513 NCSRLQVLNVANN--RIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTG 579 (816)
Q Consensus 513 ~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 579 (816)
.+++|+.|+++.| ++.+..+.....+|+|++|++++|++... ........+++|..||+.+|..+.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l-stl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL-STLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc-cccchhhhhcchhhhhcccCCccc
Confidence 3445555555555 33333333333445555555555555432 112234455667777777776654
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.00023 Score=68.85 Aligned_cols=83 Identities=27% Similarity=0.370 Sum_probs=64.0
Q ss_pred CCCCcEEECcCCCCCcccchhhhhCCCCccEEEccCCcCCccCchhhhcCCCCCEEEcccCCCcCccccccccCCCccce
Q 003488 228 LRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQY 307 (816)
Q Consensus 228 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 307 (816)
+.+.+.|++.+|.++ .| .++..++.|+.|.|+-|.++.. ..+..|++|++|.|..|.|...-+...+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 446677888888776 33 3455688999999999988744 347788899999999998886555667888899999
Q ss_pred eeCCCccc
Q 003488 308 LYLSQNRL 315 (816)
Q Consensus 308 L~L~~n~i 315 (816)
|+|..|..
T Consensus 93 LWL~ENPC 100 (388)
T KOG2123|consen 93 LWLDENPC 100 (388)
T ss_pred HhhccCCc
Confidence 99988853
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.95 E-value=0.0031 Score=36.21 Aligned_cols=18 Identities=56% Similarity=0.826 Sum_probs=7.9
Q ss_pred CCeEeCCCCcccccCcccc
Q 003488 680 LESLDLSSNRLVGQIPTQL 698 (816)
Q Consensus 680 L~~L~Ls~N~l~~~~p~~l 698 (816)
|++|||++|+++ .+|++|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444444444444 344333
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.76 E-value=0.0034 Score=36.08 Aligned_cols=19 Identities=53% Similarity=0.756 Sum_probs=9.7
Q ss_pred CcEEEccCCcCcccCCcccc
Q 003488 656 LKMLNFSHNHLTGRIPSSLR 675 (816)
Q Consensus 656 L~~L~Ls~N~l~~~ip~~l~ 675 (816)
|++|||++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4444444
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.93 E-value=0.00027 Score=77.39 Aligned_cols=43 Identities=21% Similarity=0.183 Sum_probs=28.2
Q ss_pred CCEEeCCCCCCccccCCcHHHHhhcCCCCCEEeCCCccCCCcc
Q 003488 81 MLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIV 123 (816)
Q Consensus 81 L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 123 (816)
+.+|.|.+|.+..-....+...+.....|..|++++|.+.+..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g 131 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEG 131 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHh
Confidence 6677777776666544455555666777777777777776443
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.97 E-value=0.0011 Score=72.68 Aligned_cols=190 Identities=26% Similarity=0.243 Sum_probs=97.5
Q ss_pred CCEEECCCCCCCccCc----hhhhcCCCCCEEeCCCCCCccccCCcHHHHhhcC-CCCCEEeCCCccCCCccchhhhhcc
Q 003488 57 LTHLNLSNSYFSGQIP----SEISQLSKMLSLDLSKNDEVRIESPVWKGLIENL-TKLKELVLSEVDMSTIVLDYSLTNL 131 (816)
Q Consensus 57 L~~L~Ls~n~~~~~~~----~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~l 131 (816)
+..|.|.+|.+..... ..+.....|+.|++++|.+.......+...+... ..++.|++..|.++......
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~----- 163 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAP----- 163 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHH-----
Confidence 7788888888875543 3445678888899998866632222222222222 33445555555554443221
Q ss_pred CCCCcEEEccCCcCCCCCCccCCCCCCCCEEEccCCCCCC----Cchhh----hcCCCCCCEEEccCCcCCCC----CCc
Q 003488 132 SSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSG----HIPSF----LSHLKQLYYLNLEQNNLVGG----IPD 199 (816)
Q Consensus 132 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~----~~~~~----~~~l~~L~~L~L~~n~l~~~----~~~ 199 (816)
+...+.....++.++++.|.+.. .++.. +....++++|.+.+|.++.. ...
T Consensus 164 -----------------l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~ 226 (478)
T KOG4308|consen 164 -----------------LAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDE 226 (478)
T ss_pred -----------------HHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHH
Confidence 22223333444444444443321 11112 22345566666666655421 112
Q ss_pred cccCCCC-ccEEEcccCCCCcC----CcccCCCC-CCCcEEECcCCCCCcccchhhh---hCCCCccEEEccCCcCCc
Q 003488 200 SFVNLTQ-LSFLDLSWNQLTGR----LPSCLKGL-RNLVTLRLSGNSLNGTIPSWLF---TVLPYLEVIHLRDNRFTG 268 (816)
Q Consensus 200 ~~~~l~~-L~~L~L~~n~l~~~----~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~---~~l~~L~~L~l~~n~l~~ 268 (816)
.+...+. +..+++..|.+.+. ..+.+..+ ..+++++++.|.++..-...+. ..++.++++.+.+|.+..
T Consensus 227 ~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 227 VLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 2334444 55567777666532 22234444 5667777777777644332221 125577777787777653
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.63 E-value=0.12 Score=27.46 Aligned_cols=11 Identities=45% Similarity=0.791 Sum_probs=3.6
Q ss_pred CcEEEccCCcC
Q 003488 656 LKMLNFSHNHL 666 (816)
Q Consensus 656 L~~L~Ls~N~l 666 (816)
|+.|+|++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444444
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.92 E-value=0.011 Score=56.07 Aligned_cols=85 Identities=19% Similarity=0.185 Sum_probs=70.7
Q ss_pred ccccceEEEccCCcccccCchhhhCCCCCcEEEccCCcCcccCCccccccCCCCeEeCCCCcccccCccccCCcCcCCeE
Q 003488 628 ILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKL 707 (816)
Q Consensus 628 ~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 707 (816)
.....+.||+|.|++-. .-..|.-++.|..||++.|++. ..|..++.+..+..+++..|.++ ..|-++.+.+.++++
T Consensus 40 ~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 34556789999999873 4456777888999999999997 78889999999999999888888 568889999999999
Q ss_pred eCccCccc
Q 003488 708 NLSHNQLE 715 (816)
Q Consensus 708 ~ls~N~l~ 715 (816)
+.-.|++.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 99988763
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.87 E-value=0.23 Score=29.75 Aligned_cols=16 Identities=44% Similarity=0.530 Sum_probs=7.5
Q ss_pred CCCCeEeCCCCccccc
Q 003488 678 TVLESLDLSSNRLVGQ 693 (816)
Q Consensus 678 ~~L~~L~Ls~N~l~~~ 693 (816)
++|++|+|++|+++..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3444555555554433
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.87 E-value=0.23 Score=29.75 Aligned_cols=16 Identities=44% Similarity=0.530 Sum_probs=7.5
Q ss_pred CCCCeEeCCCCccccc
Q 003488 678 TVLESLDLSSNRLVGQ 693 (816)
Q Consensus 678 ~~L~~L~Ls~N~l~~~ 693 (816)
++|++|+|++|+++..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3444555555554433
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.94 E-value=0.48 Score=28.32 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=12.1
Q ss_pred CCCCcEEEccCCcCccc
Q 003488 653 LNLLKMLNFSHNHLTGR 669 (816)
Q Consensus 653 l~~L~~L~Ls~N~l~~~ 669 (816)
+++|+.|+|++|+|+..
T Consensus 1 L~~L~~L~L~~N~l~~l 17 (26)
T smart00370 1 LPNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCCEEECCCCcCCcC
Confidence 45677888888888743
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.94 E-value=0.48 Score=28.32 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=12.1
Q ss_pred CCCCcEEEccCCcCccc
Q 003488 653 LNLLKMLNFSHNHLTGR 669 (816)
Q Consensus 653 l~~L~~L~Ls~N~l~~~ 669 (816)
+++|+.|+|++|+|+..
T Consensus 1 L~~L~~L~L~~N~l~~l 17 (26)
T smart00369 1 LPNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCCEEECCCCcCCcC
Confidence 45677888888888743
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.53 E-value=0.15 Score=47.72 Aligned_cols=84 Identities=19% Similarity=0.172 Sum_probs=47.4
Q ss_pred CCCccEEEcccCCCCcCCcccCCCCCCCcEEECcCCCCCcc-cchhhhhCCCCccEEEccCCc-CCccCchhhhcCCCCC
Q 003488 204 LTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGT-IPSWLFTVLPYLEVIHLRDNR-FTGSIPSTIFELVNLT 281 (816)
Q Consensus 204 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~ 281 (816)
-..++.+|-++..+..+.-+.+..++.++.|.+.+|.--+. --..+....++|+.|++++|. |++..-..+..+++|+
T Consensus 100 ~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 100 NVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred cceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 34566677777766655555566667777777776643211 111122235667777777653 5544445555666666
Q ss_pred EEEccc
Q 003488 282 SIRLSS 287 (816)
Q Consensus 282 ~L~L~~ 287 (816)
.|.+.+
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 665543
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.39 E-value=0.13 Score=48.16 Aligned_cols=82 Identities=18% Similarity=0.223 Sum_probs=42.0
Q ss_pred CCEEeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCcc-Cchhhh-cCCCCCEEeCCCCCCccccCCcHHHHhhcCCCC
Q 003488 32 LETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQ-IPSEIS-QLSKMLSLDLSKNDEVRIESPVWKGLIENLTKL 109 (816)
Q Consensus 32 L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~-~~~~l~-~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L 109 (816)
++.+|-+++.+..+ --+.+.+++.++.|.+.+|.--+. --..++ -.++|+.|++++|.- |.+.++ ..+.++++|
T Consensus 103 IeaVDAsds~I~~e-Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~r--IT~~GL-~~L~~lknL 178 (221)
T KOG3864|consen 103 IEAVDASDSSIMYE-GLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPR--ITDGGL-ACLLKLKNL 178 (221)
T ss_pred EEEEecCCchHHHH-HHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCe--echhHH-HHHHHhhhh
Confidence 45566666655443 223455666666666666643211 111122 246777777776622 222222 235666777
Q ss_pred CEEeCCCc
Q 003488 110 KELVLSEV 117 (816)
Q Consensus 110 ~~L~l~~~ 117 (816)
+.|.+.+-
T Consensus 179 r~L~l~~l 186 (221)
T KOG3864|consen 179 RRLHLYDL 186 (221)
T ss_pred HHHHhcCc
Confidence 77766654
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.67 E-value=0.034 Score=52.80 Aligned_cols=85 Identities=18% Similarity=0.238 Sum_probs=38.2
Q ss_pred cccCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCchhhhcCCCCCEEeCCCCCCccccCCcHHHHhhc
Q 003488 26 LFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIEN 105 (816)
Q Consensus 26 ~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~ 105 (816)
+..+...+.||++.|++.. +-..|+.++.|..||++.|.+. ..|..++....++++++..|.....+. .++.
T Consensus 38 i~~~kr~tvld~~s~r~vn--~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~-----s~~k 109 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVN--LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPK-----SQKK 109 (326)
T ss_pred hhccceeeeehhhhhHHHh--hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCc-----cccc
Confidence 3444455555555554332 2233444444555555554444 344444444445555544443333222 1344
Q ss_pred CCCCCEEeCCCcc
Q 003488 106 LTKLKELVLSEVD 118 (816)
Q Consensus 106 l~~L~~L~l~~~~ 118 (816)
.+.++.+++..+.
T Consensus 110 ~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 110 EPHPKKNEQKKTE 122 (326)
T ss_pred cCCcchhhhccCc
Confidence 4444444444443
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=80.91 E-value=0.37 Score=28.17 Aligned_cols=15 Identities=33% Similarity=0.443 Sum_probs=6.6
Q ss_pred CCCCEEECCCCCCCc
Q 003488 55 ISLTHLNLSNSYFSG 69 (816)
Q Consensus 55 ~~L~~L~Ls~n~~~~ 69 (816)
++|++|+|++|.+++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 445555555555443
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=72.85 E-value=2.8 Score=25.10 Aligned_cols=14 Identities=57% Similarity=0.733 Sum_probs=8.9
Q ss_pred CCCCeEeCCCCccc
Q 003488 678 TVLESLDLSSNRLV 691 (816)
Q Consensus 678 ~~L~~L~Ls~N~l~ 691 (816)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666664
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=68.11 E-value=3.6 Score=24.59 Aligned_cols=13 Identities=62% Similarity=0.664 Sum_probs=7.2
Q ss_pred CCcEEEccCCcCc
Q 003488 655 LLKMLNFSHNHLT 667 (816)
Q Consensus 655 ~L~~L~Ls~N~l~ 667 (816)
+|+.|+.++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4555555555555
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=62.80 E-value=5.6 Score=24.26 Aligned_cols=13 Identities=54% Similarity=0.682 Sum_probs=7.4
Q ss_pred CCCeEeCCCCccc
Q 003488 679 VLESLDLSSNRLV 691 (816)
Q Consensus 679 ~L~~L~Ls~N~l~ 691 (816)
+|++|||++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555666666554
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=59.75 E-value=58 Score=35.24 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=19.8
Q ss_pred CCCCCCeEeCCCCCCCC----CCCchhhccCCCCEEEccCCcC
Q 003488 441 TAAPIEFIDLSNNSLSG----PIPECLVDSITLIWLDLHLNSF 479 (816)
Q Consensus 441 ~~~~L~~L~ls~n~l~~----~~~~~~~~~~~L~~L~l~~n~l 479 (816)
.-+.+..|++++|.... .+|........+..+..+.|..
T Consensus 438 stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 438 STQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred cCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 34557777777776531 2333333333444444444433
No 89
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=58.69 E-value=6.8 Score=42.38 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=22.2
Q ss_pred cceeeeeehhhhHHHHHHHHHHHhhccc
Q 003488 766 DWKVAMMGYASGLVIGFSIGYMAFATGR 793 (816)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (816)
...+++|+|++++|||.+|+|++|||--
T Consensus 366 tgaIaGIsvavvvvVgglvGfLcWwf~c 393 (397)
T PF03302_consen 366 TGAIAGISVAVVVVVGGLVGFLCWWFIC 393 (397)
T ss_pred ccceeeeeehhHHHHHHHHHHHhhheee
Confidence 3467778888889999999999986543
No 90
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=53.51 E-value=9.5 Score=31.65 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=13.1
Q ss_pred eeeeeehhhhHHHHHHHHHHHhh
Q 003488 768 KVAMMGYASGLVIGFSIGYMAFA 790 (816)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~ 790 (816)
.+++++++..+++++++++++|+
T Consensus 67 aiagi~vg~~~~v~~lv~~l~w~ 89 (96)
T PTZ00382 67 AIAGISVAVVAVVGGLVGFLCWW 89 (96)
T ss_pred cEEEEEeehhhHHHHHHHHHhhe
Confidence 44555555555666666665543
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=51.48 E-value=7.3 Score=42.64 Aligned_cols=63 Identities=30% Similarity=0.375 Sum_probs=37.6
Q ss_pred ccccceEEEccCCccccc--CchhhhCCCCCcEEEccCC--cCcccCCcccccc--CCCCeEeCCCCcccc
Q 003488 628 ILSIFLVIDFSSNRFEGQ--IPEVVGKLNLLKMLNFSHN--HLTGRIPSSLRNL--TVLESLDLSSNRLVG 692 (816)
Q Consensus 628 ~l~~L~~LdLs~N~l~~~--ip~~l~~l~~L~~L~Ls~N--~l~~~ip~~l~~l--~~L~~L~Ls~N~l~~ 692 (816)
..+.+..+.||+|++... +..--...++|+.|+||+| .+... .++.++ .-|++|-+.+|.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCcccc
Confidence 456667788888888642 1111123477888888888 44321 223222 346788888888764
No 92
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=40.58 E-value=16 Score=32.67 Aligned_cols=20 Identities=10% Similarity=0.114 Sum_probs=8.7
Q ss_pred ceeeeeehhhhHHHHHHHHH
Q 003488 767 WKVAMMGYASGLVIGFSIGY 786 (816)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~ 786 (816)
.+.+++|+|+++++++++++
T Consensus 51 VIGvVVGVGg~ill~il~lv 70 (154)
T PF04478_consen 51 VIGVVVGVGGPILLGILALV 70 (154)
T ss_pred EEEEEecccHHHHHHHHHhh
Confidence 34444444444444444333
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=40.15 E-value=16 Score=48.25 Aligned_cols=33 Identities=27% Similarity=0.302 Sum_probs=22.6
Q ss_pred EccCCcCcccCCccccccCCCCeEeCCCCcccc
Q 003488 660 NFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVG 692 (816)
Q Consensus 660 ~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 692 (816)
||++|+|+...+..|..+++|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 567777775555666777777777777776663
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=38.75 E-value=18 Score=39.79 Aligned_cols=34 Identities=29% Similarity=0.452 Sum_probs=15.0
Q ss_pred cCccEEeccCCCCCCCC---ccccCCcccceeecccc
Q 003488 328 PKLLKLGLSACNISEFP---DFLRSQDRLEWLQLSEN 361 (816)
Q Consensus 328 ~~L~~L~l~~~~l~~lp---~~l~~~~~L~~L~l~~n 361 (816)
|.+..+.+++|++..+. ......++|..|+|++|
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 34444444444443221 22233445555555555
No 95
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=35.79 E-value=12 Score=31.36 Aligned_cols=25 Identities=8% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHH
Q 003488 779 VIGFSIGYMAFATGRPRWLVRMVER 803 (816)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~~~~ 803 (816)
++++++++-||++.+|..|+...++
T Consensus 35 ILgiLLliGCWYckRRSGYk~L~~k 59 (118)
T PF14991_consen 35 ILGILLLIGCWYCKRRSGYKTLRDK 59 (118)
T ss_dssp -------------------------
T ss_pred HHHHHHHHhheeeeecchhhhhhhc
Confidence 3455555667777777777776554
No 96
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=28.78 E-value=39 Score=19.99 Aligned_cols=12 Identities=17% Similarity=0.329 Sum_probs=6.8
Q ss_pred CCCcEEECcCCc
Q 003488 515 SRLQVLNVANNR 526 (816)
Q Consensus 515 ~~L~~L~Ls~N~ 526 (816)
++|+.|++++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 455666666653
No 97
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=23.07 E-value=51 Score=43.98 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=29.3
Q ss_pred EccCCcccccCchhhhCCCCCcEEEccCCcCc
Q 003488 636 DFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLT 667 (816)
Q Consensus 636 dLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 667 (816)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999999777788999999999999999986
No 98
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.62 E-value=53 Score=28.38 Aligned_cols=23 Identities=26% Similarity=0.237 Sum_probs=14.3
Q ss_pred eehhhhHHHHHHHHHHHhhccch
Q 003488 772 MGYASGLVIGFSIGYMAFATGRP 794 (816)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~ 794 (816)
..+++|+|+|+++|+++.+...+
T Consensus 9 ~~a~igLvvGi~IG~li~Rlt~~ 31 (138)
T COG3105 9 EYALIGLVVGIIIGALIARLTNR 31 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHcch
Confidence 34566667777777766655544
No 99
>PF15179 Myc_target_1: Myc target protein 1
Probab=20.10 E-value=19 Score=33.12 Aligned_cols=31 Identities=32% Similarity=0.254 Sum_probs=16.4
Q ss_pred eeehhhhHHHHHHHHHHHhhccchHHHHHHH
Q 003488 771 MMGYASGLVIGFSIGYMAFATGRPRWLVRMV 801 (816)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (816)
++.+++|+++|+++++++.|...|++--++.
T Consensus 26 ~vSm~iGLviG~li~~LltwlSRRRASa~Is 56 (197)
T PF15179_consen 26 CVSMAIGLVIGALIWALLTWLSRRRASARIS 56 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 3445556666666666555555444433333
Done!