Query 003488
Match_columns 816
No_of_seqs 499 out of 5312
Neff 10.1
Searched_HMMs 29240
Date Tue Mar 26 22:05:02 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/003488.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_117-121//hhsearch_pdb/003488hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 656.5 44.6 666 3-751 49-752 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 563.8 43.5 636 4-717 77-743 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 474.7 53.4 636 7-755 7-659 (680)
4 1ziw_A TOLL-like receptor 3; i 1.0 1 1 456.9 48.8 601 33-749 7-627 (680)
5 3j0a_A TOLL-like receptor 5; m 1.0 1 1 449.4 41.8 573 35-756 9-597 (844)
6 3t6q_A CD180 antigen; protein- 1.0 1 1 426.2 45.4 262 419-721 301-566 (606)
7 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 413.3 40.9 564 31-755 12-593 (606)
8 3j0a_A TOLL-like receptor 5; m 1.0 1 1 411.4 41.6 512 133-740 24-562 (844)
9 3t6q_A CD180 antigen; protein- 1.0 1 1 410.9 43.2 538 32-695 14-564 (606)
10 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 400.3 41.0 499 128-748 52-562 (606)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=656.47 Aligned_cols=666 Identities=32% Similarity=0.457 Sum_probs=497.3
Q ss_pred CCCEEEEECCCCCCCCC---CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCH--HHHC
Q ss_conf 88299998799988644---689544646888997759999999998990013798998887999989866834--3325
Q 003488 3 TGQVIGLDLSCSWLHGS---IPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPS--EISQ 77 (816)
Q Consensus 3 ~~~l~~L~L~~~~~~~~---~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~p~--~l~~ 77 (816)
+|||+.|||+++.+.|. +++ ++..+++|+.++++.+.+.. +|..++.+++|++|+|++|.+++.+|. .+++
T Consensus 49 ~~~v~~L~L~~~~l~g~~~~l~~--~l~~L~~L~~l~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~ 124 (768)
T 3rgz_A 49 DDKVTSIDLSSKPLNVGFSAVSS--SLLSLTGLESLFLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGS 124 (768)
T ss_dssp TTEEEEEECTTSCCCEEHHHHHH--HTTTCTTCCEEECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGG
T ss_pred CCCEEEEECCCCCCCCCCCCCCH--HHHCCCCCCCCCCCCCCCCC--CCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHC
T ss_conf 99278987789986775576696--57316802246786888678--703324578899898989857870789678727
Q ss_pred CCCCCEEECCCCCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCHHH--HHCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 99998996789988643687678885128998888589855887551234--3103799749991188688878824899
Q 003488 78 LSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYS--LTNLSSSLSYLHLTGCNLIGPIPASLAN 155 (816)
Q Consensus 78 l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--l~~l~~~L~~L~L~~~~l~~~~~~~l~~ 155 (816)
+++|++|++++|.+....... .+.++++|++|+++.|.+.+..+... +.++ ++|++|++++|.+.+..+. ..
T Consensus 125 l~~L~~L~Ls~n~l~~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~--~~ 198 (768)
T 3rgz_A 125 CSGLKFLNVSSNTLDFPGKVS---GGLKLNSLEVLDLSANSISGANVVGWVLSDGC-GELKHLAISGNKISGDVDV--SR 198 (768)
T ss_dssp CTTCCEEECCSSEEECCSSCC---SCCCCTTCSEEECCSSCCEEETHHHHHHTTCC-TTCCEEECCSSEEESCCBC--TT
T ss_pred CCCCCEEECCCCCCCCCCCHH---HHCCCCCCCEEECCCCCCCCCCCHHHHHHCCC-CCCCEEECCCCCCCCCCCC--CC
T ss_conf 889998989688267747977---85638899989897983588587155664358-9889898978803465784--54
Q ss_pred CCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 99999998317979998433322999998998427859888770036999866998116979867963479999996898
Q 003488 156 LPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLR 235 (816)
Q Consensus 156 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 235 (816)
+++|++|++++|.+++..|. +..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|.. .+++|++|+
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~ 275 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLS 275 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC--CCCCCCEEE
T ss_conf 78689898928827887711-126999998979488587816577744888898989888665716724--368789897
Q ss_pred CCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 82897986564355509998659992188577547211115999898992057776733510005888666666878644
Q 003488 236 LSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRL 315 (816)
Q Consensus 236 l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~L~~n~i 315 (816)
+++|.+.+.+|..++..+++|++|++++|.+++..|..++.+++|++|++++|.+.+.++...+..+++|++|++++|.+
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred CCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCC
T ss_conf 91785577258888844686889989689677842367755877667789788525737978872488887884847843
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 334347987787674388365778988981024885-6555403234234788800120388853369758986888787
Q 003488 316 SVNTKLDANSTFPKLLKLGLSACNISEFPDFLRSQD-RLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQ 394 (816)
Q Consensus 316 ~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~-~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 394 (816)
. +.+|..+..++ +|+.+++++|.+.+.++..+.....
T Consensus 356 ~------------------------~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~------------------ 393 (768)
T 3rgz_A 356 S------------------------GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK------------------ 393 (768)
T ss_dssp E------------------------ECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTT------------------
T ss_pred C------------------------CCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCC------------------
T ss_conf 7------------------------6230989863227719986278747876766653324------------------
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCEEEC
Q ss_conf 88999777964798587767889977517870377234433334567899894748899799999800113588879985
Q 003488 395 VPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDL 474 (816)
Q Consensus 395 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~L~~L~l 474 (816)
++++.|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++
T Consensus 394 ------------------------~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 449 (768)
T 3rgz_A 394 ------------------------NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449 (768)
T ss_dssp ------------------------CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred ------------------------CCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEEC
T ss_conf ------------------------77618989778465424877756898798989588466854677744998898989
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 58848557783555998964898458825577870257999996998768967889851114899984998667314223
Q 003488 475 HLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGL 554 (816)
Q Consensus 475 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~~~~~ 554 (816)
++|.+.+..|..+..+++|+.|++++|++++.+|.++..+++|++|++++|++.+.+|.++..+++|++|++++|.+.+.
T Consensus 450 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 529 (768)
T 3rgz_A 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEE
T ss_pred CCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCC
T ss_conf 78815471897882877732999019951375887881699899897539951896876885689999898978943374
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCC--------------------------
Q ss_conf 589954236787855617887355568468876454533167886420110023--------------------------
Q 003488 555 IGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHR-------------------------- 608 (816)
Q Consensus 555 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~-------------------------- 608 (816)
+| ..+..+++|+.|++++|.++|.+|..++.... +............+...
T Consensus 530 ~p--~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (768)
T 3rgz_A 530 IP--AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG-KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606 (768)
T ss_dssp CC--GGGGGCTTCCEEECCSSEEESBCCGGGGTTTT-CBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGG
T ss_pred CC--HHHCCCCCCCEEECCCCCCCCCCCHHHHCCCC-HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHC
T ss_conf 88--77708898998989888468827957860421-2232013454211113444322223322210013556323200
Q ss_pred ---CCCCEEEEEEEECC-EECCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf ---44310127975044-00121223320898368835445844321778896897357858666882411668779574
Q 003488 609 ---FGRYYSAFFTLKGI-DVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLD 684 (816)
Q Consensus 609 ---~~~~~~~~~~~~~~-~~~~~~~~~l~~LdLs~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ 684 (816)
............+. ...+..++.++.||+|+|+++|.+|.++++++.|+.|+|++|+++|.||..++++++|+.||
T Consensus 607 l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~Ld 686 (768)
T 3rgz_A 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686 (768)
T ss_dssp GGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEE
T ss_conf 23211001133100462743340335665797858801555877884141578784868803887896784777899898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8887253558646678676793857468560379999978865645335756998999999999999
Q 003488 685 LSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGFPLSDKCSNID 751 (816)
Q Consensus 685 Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~~lcg~~~~~~c~~~~ 751 (816)
||+|+++|.+|.++..+++|+.|++++|+++|.||.++||.+|...+|.||++|||.|+. .|....
T Consensus 687 Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~ 752 (768)
T 3rgz_A 687 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSN 752 (768)
T ss_dssp CCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred CCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCHHHCCCCHHHHCCCCHHCCCCCC-CCCCCC
T ss_conf 978802386886775788789787968815560899601024897775698321088776-788876
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=563.84 Aligned_cols=636 Identities=28% Similarity=0.381 Sum_probs=507.4
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCHHH-HCCCC
Q ss_conf 8299998799988644689544646888997759999999998990--01379899888799998986683433-25999
Q 003488 4 GQVIGLDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISS--GFGRLISLTHLNLSNSYFSGQIPSEI-SQLSK 80 (816)
Q Consensus 4 ~~l~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~l~~L~~L~Ls~~~~~~~~p~~l-~~l~~ 80 (816)
.+++.++++.+.+. .++. .+..+++|++|++++|.+.+. +|. .++++++|++|++++|.+.+..|..+ .++++
T Consensus 77 ~~L~~l~~~~~~~~-~l~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 152 (768)
T 3rgz_A 77 TGLESLFLSNSHIN-GSVS--GFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 152 (768)
T ss_dssp TTCCEEECTTSCEE-ECCC--CCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTT
T ss_pred CCCCCCCCCCCCCC-CCCH--HHCCCCCCCEEECCCCCCCCC-CCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCC
T ss_conf 80224678688867-8703--324578899898989857870-7896787278899989896882677479778563889
Q ss_pred CCEEECCCCCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98996789988643687678885128998888589855887551234310379974999118868887882489999999
Q 003488 81 MLSLDLSKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLT 160 (816)
Q Consensus 81 L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~ 160 (816)
|++|++++|.+....... ...+.++++|++|++++|.+.+..+. ..+ ++|++|++++|.+.+.++. +.++++|+
T Consensus 153 L~~L~Ls~n~l~~~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~l-~~L~~L~Ls~n~l~~~~~~-l~~l~~L~ 226 (768)
T 3rgz_A 153 LEVLDLSANSISGANVVG-WVLSDGCGELKHLAISGNKISGDVDV---SRC-VNLEFLDVSSNNFSTGIPF-LGDCSALQ 226 (768)
T ss_dssp CSEEECCSSCCEEETHHH-HHHTTCCTTCCEEECCSSEEESCCBC---TTC-TTCCEEECCSSCCCSCCCB-CTTCCSCC
T ss_pred CCEEECCCCCCCCCCCHH-HHHHCCCCCCCEEECCCCCCCCCCCC---CCC-CCCCEEECCCCCCCCCCCC-CCCCCCCC
T ss_conf 998989798358858715-56643589889898978803465784---547-8689898928827887711-12699999
Q ss_pred EEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCEEECCCC
Q ss_conf 99831797999843332299999899842785988877003699986699811697986796347999-99968988289
Q 003488 161 SLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGL-RNLVTLRLSGN 239 (816)
Q Consensus 161 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l-~~L~~L~l~~n 239 (816)
+|++++|.+++..+..+..+++|++|++++|.+.+..|.. .+++|++|++++|.+.+.+|..+... ++|++|++++|
T Consensus 227 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n 304 (768)
T 3rgz_A 227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304 (768)
T ss_dssp EEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSS
T ss_pred EEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCC
T ss_conf 8979488587816577744888898989888665716724--36878989791785577258888844686889989689
Q ss_pred CCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHH-HHCCCCCCEEECCCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCC
Q ss_conf 7986564355509998659992188577547211-115999898992057776733510005888-66666687864433
Q 003488 240 SLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPST-IFELVNLTSIRLSSNNLSGHIELCMFARLK-NLQYLYLSQNRLSV 317 (816)
Q Consensus 240 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~l~~~~-~L~~L~L~~n~i~~ 317 (816)
.+.+.+|..+.. +++|+.|++++|.+.+.+|.. +..+++|++|++++|.+.+.++ ..+..++ +|+.|++++|.+..
T Consensus 305 ~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~~L~~L~Ls~N~l~~ 382 (768)
T 3rgz_A 305 HFYGAVPPFFGS-CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP-ESLTNLSASLLTLDLSSNNFSG 382 (768)
T ss_dssp EEEECCCGGGGG-CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCC-TTHHHHTTTCSEEECCSSEEEE
T ss_pred CCCCCCCHHHHC-CCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCC-HHHHHHHCCCCEEECCCCCCCC
T ss_conf 677842367755-87766778978852573797887248888788484784376230-9898632277199862787478
Q ss_pred CCCCCCCC-CCCCCCEEECCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 43479877-8767438836577898-898102488565554032342347888001203888533697589868887878
Q 003488 318 NTKLDANS-TFPKLLKLGLSACNIS-EFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQV 395 (816)
Q Consensus 318 ~~~~~~~~-~~~~L~~L~l~~~~i~-~l~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 395 (816)
........ .+++|+.+++++|.+. .+|..+..+++|+.|++++|.+.+.+|..+. .+++|+.+++++|.+.+..+.
T Consensus 383 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~p~ 460 (768)
T 3rgz_A 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG--SLSKLRDLKLWLNMLEGEIPQ 460 (768)
T ss_dssp ECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG--GCTTCCEEECCSSCCCSCCCG
T ss_pred CCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHH--CCCCCCEEECCCCCCCCCCCH
T ss_conf 767666533247761898977846542487775689879898958846685467774--499889898978815471897
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCEEECC
Q ss_conf 89997779647985877678899775178703772344333345678998947488997999998001135888799855
Q 003488 396 PLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLH 475 (816)
Q Consensus 396 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~L~~L~l~ 475 (816)
. ...+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|.++..+++|+.|+++
T Consensus 461 ~------------------~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 522 (768)
T 3rgz_A 461 E------------------LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522 (768)
T ss_dssp G------------------GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred H------------------HCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECC
T ss_conf 8------------------8287773299901995137588788169989989753995189687688568999989897
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC----------------------CCCCCCCC
Q ss_conf 88485577835559989648984588255778702579999969987689----------------------67889851
Q 003488 476 LNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANN----------------------RIDDTFPH 533 (816)
Q Consensus 476 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n----------------------~l~~~~~~ 533 (816)
+|.+.+.+|..+..+++|+.|++++|.+++.+|.++..+..+..+++..+ .+.+..+.
T Consensus 523 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (768)
T 3rgz_A 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 602 (768)
T ss_dssp SSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGG
T ss_pred CCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 89433748877708898998989888468827957860421223201345421111344432222332221001355632
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCE
Q ss_conf 11489998499866731422358995423678785561788735556846887645453316788642011002344310
Q 003488 534 WLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYY 613 (816)
Q Consensus 534 ~~~~l~~L~~L~L~~N~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 613 (816)
.+..++.+..+++..|.+.+.+| ..+..+++|+.||+++|.++|.+|..+
T Consensus 603 ~~~~l~~~~~~~l~~~~~~g~~~--~~~~~l~~L~~LdLs~N~l~g~ip~~l---------------------------- 652 (768)
T 3rgz_A 603 QLNRLSTRNPCNITSRVYGGHTS--PTFDNNGSMMFLDMSYNMLSGYIPKEI---------------------------- 652 (768)
T ss_dssp GGGGGGGTCCSCTTSCEEEEECC--CSCSSSBCCCEEECCSSCCBSCCCGGG----------------------------
T ss_pred HHHCCCCCCCCCCCCCEECCCCC--HHHHCCCCCCEEECCCCCCCCCCCHHH----------------------------
T ss_conf 32002321100113310046274--334033566579785880155587788----------------------------
Q ss_pred EEEEEEECCEECCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 12797504400121223320898368835445844321778896897357858666882411668779574888725355
Q 003488 614 SAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQ 693 (816)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~l~~LdLs~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 693 (816)
..++.|+.|||++|+++|.+|..+++++.|++||||+|+++|.||..++++++|+.||+|+|+++|.
T Consensus 653 -------------~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ 719 (768)
T 3rgz_A 653 -------------GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 719 (768)
T ss_dssp -------------GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEE
T ss_pred -------------HCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCC
T ss_conf -------------4141578784868803887896784777899898978802386886775788789787968815560
Q ss_pred CCCCCCCCCCCCEEECCCCC-CCCC
Q ss_conf 86466786767938574685-6037
Q 003488 694 IPTQLTSLNFLSKLNLSHNQ-LEGP 717 (816)
Q Consensus 694 ~p~~l~~l~~L~~L~ls~N~-l~g~ 717 (816)
+|.. ..+..+....+.+|+ ++|.
T Consensus 720 iP~~-~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 720 IPEM-GQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp CCSS-SSGGGSCGGGGCSCTEEEST
T ss_pred CCCC-HHHCCCCHHHHCCCCHHCCC
T ss_conf 8996-01024897775698321088
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=474.74 Aligned_cols=636 Identities=22% Similarity=0.230 Sum_probs=393.7
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEEC
Q ss_conf 99987999886446895446468889977599999999989900137989988879999898668343325999989967
Q 003488 7 IGLDLSCSWLHGSIPSNSSLFLLPYLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDL 86 (816)
Q Consensus 7 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L 86 (816)
..+|.++..+. .+|. .+. +++++|++++|.+++. .+..|.++++|++|++++|.+++..|..+.++++|++|++
T Consensus 7 ~~~~cs~~~L~-~ip~--~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 80 (680)
T 1ziw_A 7 EVADCSHLKLT-QVPD--DLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNL 80 (680)
T ss_dssp SEEECCSSCCS-SCCS--CSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEEC
T ss_pred CEEECCCCCCC-CCCC--CCC--CCCCEEECCCCCCCCC-CHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEEC
T ss_conf 74487779805-2641--248--8876888989977875-9788717876758878899648569778740667688889
Q ss_pred CCCCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 89988643687678885128998888589855887551234310379974999118868887882489999999998317
Q 003488 87 SKNDEVRIESPVWKGLIENLTKLKELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSY 166 (816)
Q Consensus 87 s~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~ 166 (816)
++|.+..++... +.++++|++|++++|.+.+..+. .+.++ ++|++|++++|.+.+..+..+.++++|++|++++
T Consensus 81 ~~n~l~~l~~~~----~~~l~~L~~L~L~~n~l~~~~~~-~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 154 (680)
T 1ziw_A 81 QHNELSQLSDKT----FAFCTNLTELHLMSNSIQKIKNN-PFVKQ-KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN 154 (680)
T ss_dssp CSSCCCCCCTTT----TTTCTTCSEEECCSSCCCCCCSC-TTTTC-TTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS
T ss_pred CCCCCCCCCHHH----HCCCCCCCEEECCCCCCCCCCHH-HCCCC-CCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCC
T ss_conf 998567568545----30388889898989966853966-74156-7888898989952466721112455677797458
Q ss_pred CCCCCCCHHHHC--CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC---CCCCCCCEEECCCCCC
Q ss_conf 979998433322--99999899842785988877003699986699811697986796347---9999996898828979
Q 003488 167 NHFSGHIPSFLS--HLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCL---KGLRNLVTLRLSGNSL 241 (816)
Q Consensus 167 n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l---~~l~~L~~L~l~~n~~ 241 (816)
|.+++..+..+. .+++|++|++++|.+.+..+..+..+++|+.++++++.+.......+ ...++|+.|++++|.+
T Consensus 155 n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l 234 (680)
T 1ziw_A 155 NKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234 (680)
T ss_dssp SCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCC
T ss_pred CCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCC
T ss_conf 84365297886244666321798889825655815553223445543056646805677787775315100887457743
Q ss_pred CCCCCHHHHHCCC--CCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 8656435550999--86599921885775472111159998989920577767335100058886666668786443343
Q 003488 242 NGTIPSWLFTVLP--YLEVIHLRDNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNT 319 (816)
Q Consensus 242 ~~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~L~~n~i~~~~ 319 (816)
.+..+..+.. ++ +|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+ ..+..+++|+.++++++......
T Consensus 235 ~~~~~~~~~~-l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~~~~~~~~ 312 (680)
T 1ziw_A 235 STTSNTTFLG-LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS-HSLHGLFNVRYLNLKRSFTKQSI 312 (680)
T ss_dssp CEECTTTTGG-GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECT-TTTTTCTTCCEEECTTCBCCC--
T ss_pred CCCCHHHHHC-CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCH-HHHCCCCCCCEEECCCHHHHCCC
T ss_conf 6468667514-676778887787887675680211674105685577885676586-56267888557736331321333
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCC----CCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 47987787674388365778988981----02488565554032342347888001203888533697589868887878
Q 003488 320 KLDANSTFPKLLKLGLSACNISEFPD----FLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQV 395 (816)
Q Consensus 320 ~~~~~~~~~~L~~L~l~~~~i~~l~~----~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 395 (816)
. ...+|. .+..+++|+.+++++|.+.+..+..+. .+++|+.+++++|.+.....
T Consensus 313 ~-------------------~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~~~~~~l- 370 (680)
T 1ziw_A 313 S-------------------LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT--GLINLKYLSLSNSFTSLRTL- 370 (680)
T ss_dssp -----------------------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTT--TCTTCCEEECTTCBSCCCEE-
T ss_pred C-------------------CCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHC--CCCCCCEEECCCCCHHHHHC-
T ss_conf 3-------------------3554543865624677788887989826878855740--65687289887980144323-
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCCHHHCCCCCCEEE
Q ss_conf 899977796479858776788997751787037723443333456--789989474889979999980011358887998
Q 003488 396 PLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCSFC--TAAPIEFIDLSNNSLSGPIPECLVDSITLIWLD 473 (816)
Q Consensus 396 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~ls~n~l~~~~p~~~~~~~~L~~L~ 473 (816)
....+. ..++|+.|++++|.+.+..|..+..+.+|+.|+
T Consensus 371 ---------------------------------------~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 411 (680)
T 1ziw_A 371 ---------------------------------------TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD 411 (680)
T ss_dssp ---------------------------------------CTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ---------------------------------------CHHHHCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCEEE
T ss_conf ---------------------------------------53220245568676688999977767754420778888886
Q ss_pred CCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC--CCCCCCCCCCCCCCEEECCCCC
Q ss_conf 55884855778-35559989648984588255778702579999969987689678--8985111489998499866731
Q 003488 474 LHLNSFNGSIP-QISANGSGLVNLILNDNQFEGPLPQSLANCSRLQVLNVANNRID--DTFPHWLAQLPELLVLILRSNK 550 (816)
Q Consensus 474 l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~N~ 550 (816)
+++|.+.+.++ ..+.++++|+.|++++|++.+..+..+..+++|+.|++++|.+. +..|.++.++++|+.|++++|.
T Consensus 412 L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~ 491 (680)
T 1ziw_A 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN 491 (680)
T ss_dssp CCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
T ss_conf 77875754357553257546127844899754227645500754310110146442256677645557878999899998
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEEEEECCEECCCCCC
Q ss_conf 42235899542367878556178873555684688764545331678864201100234431012797504400121223
Q 003488 551 FYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILS 630 (816)
Q Consensus 551 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (816)
+++..+ ..+..+++|+.|++++|.+++..+..... +....+..++
T Consensus 492 l~~i~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---------------------------------~~~~~~~~l~ 536 (680)
T 1ziw_A 492 IANIND--DMLEGLEKLEILDLQHNNLARLWKHANPG---------------------------------GPIYFLKGLS 536 (680)
T ss_dssp CCCCCT--TTTTTCTTCCEEECCSSCCGGGGSTTSTT---------------------------------SCCCTTTTCT
T ss_pred CCCCCH--HHHCCCCCCCEEECCCCCCCCCCHHHCCC---------------------------------CCCHHHCCCC
T ss_conf 776794--46345534688858899730000000467---------------------------------7414233799
Q ss_pred CCEEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC-CCCCCCEEEC
Q ss_conf 320898368835445844321778896897357858666882411668779574888725355864667-8676793857
Q 003488 631 IFLVIDFSSNRFEGQIPEVVGKLNLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLT-SLNFLSKLNL 709 (816)
Q Consensus 631 ~l~~LdLs~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~l 709 (816)
.|+.|++++|+++...+..+.++++|+.|+|++|++++..+..+.++++|+.|++++|++++..|..+. .+++|+.+++
T Consensus 537 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l 616 (680)
T 1ziw_A 537 HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDM 616 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEEC
T ss_pred CCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEEC
T ss_conf 88888899997887797773466675223899997776797683789888889899996870596683011466577983
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4685603799999788656453357569989999999999999999
Q 003488 710 SHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGFPLSDKCSNIDDAQE 755 (816)
Q Consensus 710 s~N~l~g~ip~~~~~~~~~~~~~~~n~~lcg~~~~~~c~~~~~~~~ 755 (816)
++|++.|.++....|..+-... ....-+......|..|+..++
T Consensus 617 ~~N~~~c~c~~~~~~~~~~~~~---~~~~~~~~~~~~C~~p~~~~g 659 (680)
T 1ziw_A 617 RFNPFDCTCESIAWFVNWINET---HTNIPELSSHYLCNTPPHYHG 659 (680)
T ss_dssp TTCCCCBCCCCCSSEECCSSCC------------------------
T ss_pred CCCCCCCCCCCHHHHHHHHHHC---CCCCCCCCCCCEECCCHHHCC
T ss_conf 1897025776689999998736---764346667857797559889
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=456.91 Aligned_cols=601 Identities=21% Similarity=0.228 Sum_probs=395.7
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHHCCCCCCEE
Q ss_conf 97759999999998990013798998887999989866834332599998996789988643687678885128998888
Q 003488 33 ETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKEL 112 (816)
Q Consensus 33 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L 112 (816)
+.++.++++++. +|..+. +++++|++++|.+++..+..+.++++|++|++++|.+..+... .+.++++|++|
T Consensus 7 ~~~~cs~~~L~~--ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L 78 (680)
T 1ziw_A 7 EVADCSHLKLTQ--VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE----LCQKLPMLKVL 78 (680)
T ss_dssp SEEECCSSCCSS--CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTT----HHHHCTTCCEE
T ss_pred CEEECCCCCCCC--CCCCCC--CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHH----HHHCCCCCCEE
T ss_conf 744877798052--641248--8876888989977875978871787675887889964856977----87406676888
Q ss_pred ECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCC
Q ss_conf 58985588755123431037997499911886888788248999999999831797999843332299999899842785
Q 003488 113 VLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNN 192 (816)
Q Consensus 113 ~l~~~~~~~~~~~~~l~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 192 (816)
++++|.+...... .+.++ ++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 79 ~L~~n~l~~l~~~-~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 156 (680)
T 1ziw_A 79 NLQHNELSQLSDK-TFAFC-TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156 (680)
T ss_dssp ECCSSCCCCCCTT-TTTTC-TTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC
T ss_pred ECCCCCCCCCCHH-HHCCC-CCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCC
T ss_conf 8999856756854-53038-888989898996685396674156788889898995246672111245567779745884
Q ss_pred CCCCCCCCCC--CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHH--CCCCCCEEECCCCCCCC
Q ss_conf 9888770036--9998669981169798679634799999968988289798656435550--99986599921885775
Q 003488 193 LVGGIPDSFV--NLTQLSFLDLSWNQLTGRLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFT--VLPYLEVIHLRDNRFTG 268 (816)
Q Consensus 193 l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~--~l~~L~~L~L~~n~l~~ 268 (816)
+.+..+..+. .+++|++|++++|.+.+..+..+..+++|+.+++.++.+.......... ..++|+.|++++|.+.+
T Consensus 157 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~ 236 (680)
T 1ziw_A 157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 236 (680)
T ss_dssp CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCE
T ss_pred CCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCC
T ss_conf 36529788624466632179888982565581555322344554305664680567778777531510088745774364
Q ss_pred CCCHHHHCCCC--CCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 47211115999--8989920577767335100058886666668786443343479877876743883657789889810
Q 003488 269 SIPSTIFELVN--LTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDF 346 (816)
Q Consensus 269 ~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~ 346 (816)
..+..+..++. |++|++++|.+.+.. ...+..+++|+.|+++
T Consensus 237 ~~~~~~~~l~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~----------------------------------- 280 (680)
T 1ziw_A 237 TSNTTFLGLKWTNLTMLDLSYNNLNVVG-NDSFAWLPQLEYFFLE----------------------------------- 280 (680)
T ss_dssp ECTTTTGGGGGSCCCEEECTTSCCCEEC-TTTTTTCTTCCEEECC-----------------------------------
T ss_pred CCHHHHHCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEECC-----------------------------------
T ss_conf 6866751467677888778788767568-0211674105685577-----------------------------------
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 24885655540323423478880012038885336975898688878788999777964798587767889977517870
Q 003488 347 LRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSI 426 (816)
Q Consensus 347 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l 426 (816)
+|.+.+..+..+. .+++|+.+++++|....... ...+.. +.......+++|+.+++
T Consensus 281 -------------~n~l~~~~~~~~~--~l~~L~~L~L~~~~~~~~~~--~~~lp~-------i~~~~~~~l~~L~~L~l 336 (680)
T 1ziw_A 281 -------------YNNIQHLFSHSLH--GLFNVRYLNLKRSFTKQSIS--LASLPK-------IDDFSFQWLKCLEHLNM 336 (680)
T ss_dssp -------------SCCBSEECTTTTT--TCTTCCEEECTTCBCCC--------CCE-------ECTTTTTTCTTCCEEEC
T ss_pred -------------CCCCCCCCHHHHC--CCCCCCEEECCCHHHHCCCC--CCCCCC-------CCHHHCCCCCCCCEEEC
T ss_conf -------------8856765865626--78885577363313213333--355454-------38656246777888879
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC--CCCHHHCC--CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 37723443333456789989474889979999--98001135--888799855884855778355599896489845882
Q 003488 427 SNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGP--IPECLVDS--ITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQ 502 (816)
Q Consensus 427 ~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~--~p~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 502 (816)
++|.+.+..+..+..+++|+.|++++|.+... ....+..+ .+|+.|++++|++.+..+..+..+++|+.|++++|.
T Consensus 337 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 416 (680)
T 1ziw_A 337 EDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416 (680)
T ss_dssp CSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCC
T ss_conf 89826878855740656872898879801443235322024556867668899997776775442077888888677875
Q ss_pred CCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 557787-0257999996998768967889851114899984998667314223589954236787855617887355568
Q 003488 503 FEGPLP-QSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVL 581 (816)
Q Consensus 503 l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 581 (816)
+.+.+| ..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+.........+..+++|+.|++++|.+++..
T Consensus 417 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~ 496 (680)
T 1ziw_A 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN 496 (680)
T ss_dssp CEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
T ss_conf 75435755325754612784489975422764550075431011014644225667764555787899989999877679
Q ss_pred CHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEEEEECCEECCCCCCCCEEEECCCCCCCCCCC--------HHHHCC
Q ss_conf 468876454533167886420110023443101279750440012122332089836883544584--------432177
Q 003488 582 PTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIP--------EVVGKL 653 (816)
Q Consensus 582 p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~n~l~~~ip--------~~l~~l 653 (816)
+. .+ ..++.|+.|++++|.+++..+ ..+.++
T Consensus 497 ~~-~~----------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l 535 (680)
T 1ziw_A 497 DD-ML----------------------------------------EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGL 535 (680)
T ss_dssp TT-TT----------------------------------------TTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTC
T ss_pred HH-HH----------------------------------------CCCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCC
T ss_conf 44-63----------------------------------------45534688858899730000000467741423379
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC-CCCC
Q ss_conf 889689735785866688241166877957488872535586466786767938574685603799999788656-4533
Q 003488 654 NLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQ-SDSY 732 (816)
Q Consensus 654 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~-~~~~ 732 (816)
++|+.|+|++|+++...+..|+++++|+.|++++|++++..+..|..+++|+.|++++|++++..|.. |. ....
T Consensus 536 ~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~-----~~~~~~~ 610 (680)
T 1ziw_A 536 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV-----FGPAFRN 610 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHH-----HHHHHTT
T ss_pred CCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHH-----HCCCCCC
T ss_conf 98888889999788779777346667522389999777679768378988888989999687059668-----3011466
Q ss_pred CCCCCCCCCCCCCCCCC
Q ss_conf 57569989999999999
Q 003488 733 IGNLGLCGFPLSDKCSN 749 (816)
Q Consensus 733 ~~n~~lcg~~~~~~c~~ 749 (816)
.....+.|+|+.|+|..
T Consensus 611 L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 611 LTELDMRFNPFDCTCES 627 (680)
T ss_dssp CSEEECTTCCCCBCCCC
T ss_pred CCEEECCCCCCCCCCCC
T ss_conf 57798318970257766
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=449.41 Aligned_cols=573 Identities=22% Similarity=0.239 Sum_probs=321.7
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCC-CCCCCCCHHHHHHCCCCCCEEE
Q ss_conf 759999999998990013798998887999989866834332599998996789988-6436876788851289988885
Q 003488 35 LNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDE-VRIESPVWKGLIENLTKLKELV 113 (816)
Q Consensus 35 L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~Ls~n~~-~~~~~~~~~~~l~~l~~L~~L~ 113 (816)
.+.++++++. +|. ..+++++|+|++|.+++..+..+.++++|++|++++|.. ..++. ..+.++++|+.|+
T Consensus 9 ~dcs~~~L~~--vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~----~~f~~L~~L~~L~ 79 (844)
T 3j0a_A 9 AFYRFCNLTQ--VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDK----EAFRNLPNLRILD 79 (844)
T ss_dssp EEESCCCSSC--CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECT----TTTSSCTTCCEEE
T ss_pred EECCCCCCCC--CCC---CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCH----HHHCCCCCCCEEE
T ss_conf 9823799777--898---999868888877867832966776621370886789977444197----7853787788887
Q ss_pred CCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCH-HHHCCCCCCCEEECCC
Q ss_conf 898558875512343103799749991188688878824--8999999999831797999843-3322999998998427
Q 003488 114 LSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPAS--LANLPQLTSLSLSYNHFSGHIP-SFLSHLKQLYYLNLEQ 190 (816)
Q Consensus 114 l~~~~~~~~~~~~~l~~l~~~L~~L~L~~~~l~~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~ 190 (816)
+++|.+.+..+. .+..+ ++|++|++++|.+.+.++.. +.++++|++|++++|.+++..+ ..|+++++|++|++++
T Consensus 80 Ls~N~l~~~~p~-~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~ 157 (844)
T 3j0a_A 80 LGSSKIYFLHPD-AFQGL-FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157 (844)
T ss_dssp CTTCCCCEECTT-SSCSC-SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES
T ss_pred CCCCCCCCCCHH-HCCCC-CCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCC
T ss_conf 989958531976-71578-6658701767889734046764556679998889878642325665576388989898989
Q ss_pred CCCCCCCCCCCCCC--CCCCEEECCCCCCCCCCCCCCCCCCC------CCEEECCCCCCCCCCCHHHHHCCCCCCEEECC
Q ss_conf 85988877003699--98669981169798679634799999------96898828979865643555099986599921
Q 003488 191 NNLVGGIPDSFVNL--TQLSFLDLSWNQLTGRLPSCLKGLRN------LVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLR 262 (816)
Q Consensus 191 n~l~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~~~~l~~l~~------L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~ 262 (816)
|.+.+..+..+..+ ++|+.|+++.|.+.+..+..+..+.+ |+.|++++|.+.+.++..+....
T Consensus 158 N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l--------- 228 (844)
T 3j0a_A 158 NQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI--------- 228 (844)
T ss_dssp SCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTS---------
T ss_pred CCCCEECHHHCCCCCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHC---------
T ss_conf 84776678875355677503578978866655455332237722357400796578868656778887642---------
Q ss_pred CCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC--CCCCCCEEECCCCCC
Q ss_conf 885775472111159998989920577767335100058886666668786443343479877--876743883657789
Q 003488 263 DNRFTGSIPSTIFELVNLTSIRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANS--TFPKLLKLGLSACNI 340 (816)
Q Consensus 263 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~--~~~~L~~L~l~~~~i 340 (816)
....+..+.++.+....... .+.+.... ...+. ..++++.|++++|.+
T Consensus 229 -------------~~~~l~~L~l~~~~~~~~~~----------------~~~l~~~~-~~~f~~l~~~~L~~L~Ls~n~l 278 (844)
T 3j0a_A 229 -------------SKSQAFSLILAHHIMGAGFG----------------FHNIKDPD-QNTFAGLARSSVRHLDLSHGFV 278 (844)
T ss_dssp -------------CSCCBSEEECCSSCCBCSSS----------------CSSSTTGG-GTTTTTTTTSCCCEEECTTCCC
T ss_pred -------------CCCCCCCEECCCCCCCCCCC----------------CCCCCCCC-HHHHHCCCCCCCCEEECCCCCC
T ss_conf -------------74410011212122346644----------------45668898-5565255547861898979945
Q ss_pred CCC-CCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 889-8102488565554032342347888001203888533697589868887878899977796479858776788997
Q 003488 341 SEF-PDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPP 419 (816)
Q Consensus 341 ~~l-~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 419 (816)
..+ +..+..+++|+.|++++|.+.+..+..|. .++
T Consensus 279 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--------------------------------------------~l~ 314 (844)
T 3j0a_A 279 FSLNSRVFETLKDLKVLNLAYNKINKIADEAFY--------------------------------------------GLD 314 (844)
T ss_dssp CEECSCCSSSCCCCCEEEEESCCCCEECTTTTT--------------------------------------------TCS
T ss_pred CCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHC--------------------------------------------CCC
T ss_conf 515863452589999998979818987968836--------------------------------------------888
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 75178703772344333345678998947488997999998001135888799855884855778355599896489845
Q 003488 420 RLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILN 499 (816)
Q Consensus 420 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 499 (816)
+|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.. .+++|+.++++
T Consensus 315 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~ 389 (844)
T 3j0a_A 315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLS 389 (844)
T ss_dssp SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEE
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCC-----CCCCCCHHCCC
T ss_conf 9998989899788518788468999998989899877628666137888999889899778616-----88982320058
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 882557787025799999699876896788985-1114899984998667314223589954236787855617887355
Q 003488 500 DNQFEGPLPQSLANCSRLQVLNVANNRIDDTFP-HWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFT 578 (816)
Q Consensus 500 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 578 (816)
+|+++ .+|.. ...++.|++++|.+.+... ..+.++++|+.|++++|.+++..+. ..+..+++|+.|++++|.+.
T Consensus 390 ~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~~~~~L~~L~Ls~N~l~ 464 (844)
T 3j0a_A 390 GNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD-QTPSENPSLEQLFLGENMLQ 464 (844)
T ss_dssp SCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSS-SSSCSCTTCCBCEEESCCCS
T ss_pred CCCCC-CCCCC---CCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCC
T ss_conf 99723-14554---554312214567534575566651277666666778712555543-33566873100247777364
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEEEEECCEECCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCE
Q ss_conf 56846887645453316788642011002344310127975044001212233208983688354458443217788968
Q 003488 579 GVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKM 658 (816)
Q Consensus 579 ~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~n~l~~~ip~~l~~l~~L~~ 658 (816)
...+... ....+..++.|+.|||++|++++.+|..+.++++|+.
T Consensus 465 ~~~~~~~------------------------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 508 (844)
T 3j0a_A 465 LAWETEL------------------------------------CWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG 508 (844)
T ss_dssp SSCCSCC------------------------------------CSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSE
T ss_pred CCCCCCC------------------------------------CHHHHCCCCCCCEEECCCCCCCCCCHHHCCCHHHHHE
T ss_conf 4101355------------------------------------3555447553657778898565539557045012215
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 97357858666882411668779574888725355864667867679385746856037999997886564533575699
Q 003488 659 LNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGL 738 (816)
Q Consensus 659 L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~~l 738 (816)
|+|++|++++..|..+. ++|+.|++++|++++.+|..|. +|+.+++++|++.|.++.. .|......++..+
T Consensus 509 L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~----~f~~~~~~~~~~~ 579 (844)
T 3j0a_A 509 LSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECELS----TFINWLNHTNVTI 579 (844)
T ss_dssp EEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSCC----SHHHHHHHTTTTT
T ss_pred EECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHHHC---CCCEEEECCCCCCCCCCCH----HHHHHHHHCCCCC
T ss_conf 69999978745710110--0455888988847888966837---7688993199702536618----9999997368530
Q ss_pred CCCCCCCCCCCCCCCCCC
Q ss_conf 899999999999999999
Q 003488 739 CGFPLSDKCSNIDDAQEP 756 (816)
Q Consensus 739 cg~~~~~~c~~~~~~~~~ 756 (816)
+|+|....|..|...++.
T Consensus 580 ~~~~~~~~C~~p~~~~g~ 597 (844)
T 3j0a_A 580 AGPPADIYCVYPDSFSGV 597 (844)
T ss_dssp CCCGGGCCCSSCSSSCSC
T ss_pred CCCCCCCCCCCCHHHCCC
T ss_conf 266002755780665797
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=426.18 Aligned_cols=262 Identities=21% Similarity=0.207 Sum_probs=197.2
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-HHHCCCCCCEEECCCCCCCCCC--CCCCCCCCCCCE
Q ss_conf 7751787037723443333456789989474889979999980-0113588879985588485577--835559989648
Q 003488 419 PRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGPIPE-CLVDSITLIWLDLHLNSFNGSI--PQISANGSGLVN 495 (816)
Q Consensus 419 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~-~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~ 495 (816)
++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.++. .+..+++|+.|++++|.+.+.. +..+..+++|+.
T Consensus 301 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 380 (606)
T 3t6q_A 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQS 380 (606)
T ss_dssp TTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCE
T ss_pred CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCE
T ss_conf 46888977168768676023301576898889899744434624550667589887889966645675221056788898
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 98458825577870257999996998768967889851-11489998499866731422358995423678785561788
Q 003488 496 LILNDNQFEGPLPQSLANCSRLQVLNVANNRIDDTFPH-WLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSR 574 (816)
Q Consensus 496 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~N~~~~~~~~~~~~~~l~~L~~L~Ls~ 574 (816)
|++++|.+.+..|..+..+++|+.|++++|.+.+..+. .+..+++|++|++++|.+.+..+ ..+..+++|+.|++++
T Consensus 381 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~ 458 (606)
T 3t6q_A 381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE--QLFDGLPALQHLNLQG 458 (606)
T ss_dssp EECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCT--TTTTTCTTCCEEECTT
T ss_pred EECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCH--HHHHCCCCCCEEECCC
T ss_conf 98989967757888734774577687888867775652124176558889898985577687--7873788788898989
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEEEEECCEECCCCCCCCEEEECCCCCCCCCCCHHHHCCC
Q ss_conf 73555684688764545331678864201100234431012797504400121223320898368835445844321778
Q 003488 575 NEFTGVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLN 654 (816)
Q Consensus 575 N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~n~l~~~ip~~l~~l~ 654 (816)
|.+.+..... ...+..++.|+.|++++|++++.+|..+++++
T Consensus 459 n~l~~~~~~~--------------------------------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 500 (606)
T 3t6q_A 459 NHFPKGNIQK--------------------------------------TNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK 500 (606)
T ss_dssp CBCGGGEECS--------------------------------------SCGGGGCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred CCCCCCCCCC--------------------------------------CHHHCCCCCCCEEECCCCCCCCCCHHHHCCCC
T ss_conf 9888543454--------------------------------------31240488766887999966706864632656
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 8968973578586668824116687795748887253558646678676793857468560379999
Q 003488 655 LLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQG 721 (816)
Q Consensus 655 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 721 (816)
+|+.|+|++|++++.+|..+++++.| .|++++|++++.+|..+..+++|+.+++++|++.|.++..
T Consensus 501 ~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 566 (606)
T 3t6q_A 501 MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI 566 (606)
T ss_dssp TCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGH
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCH
T ss_conf 78889898980686896684756651-8987689414268766256778788967799861667757
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=413.33 Aligned_cols=564 Identities=20% Similarity=0.182 Sum_probs=298.0
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 89977599999999989900137989988879999898668343325999989967899886436876788851289988
Q 003488 31 YLETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLK 110 (816)
Q Consensus 31 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~ 110 (816)
.-+.++.++++++. +|..+. +++++|++++|.+++..+..+.++++|++|++++|.+..+...
T Consensus 12 ~~~~~~c~~~~l~~--ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~------------- 74 (606)
T 3vq2_A 12 PNITYQCMDQKLSK--VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDK------------- 74 (606)
T ss_dssp TTTEEECTTSCCSS--CCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-------------
T ss_pred CCCCEECCCCCCCC--CCCCCC--CCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHH-------------
T ss_conf 89705746888451--898888--8767887888975773754555776674886887736643977-------------
Q ss_pred EEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCC
Q ss_conf 88589855887551234310379974999118868887882489999999998317979998433322999998998427
Q 003488 111 ELVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQ 190 (816)
Q Consensus 111 ~L~l~~~~~~~~~~~~~l~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 190 (816)
.+.++ ++|++|++++|.+.+..|..++++++|++|++++|.+++..+..+.++++|++|++++
T Consensus 75 ----------------~~~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 137 (606)
T 3vq2_A 75 ----------------AWHGL-HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH 137 (606)
T ss_dssp ----------------TTTTC-TTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCS
T ss_pred ----------------HHHCH-HHCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
T ss_conf ----------------73060-1068867879856304852207865378887037755544511348988779896878
Q ss_pred CCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC----CEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCC
Q ss_conf 85988-877003699986699811697986796347999999----6898828979865643555099986599921885
Q 003488 191 NNLVG-GIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNL----VTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNR 265 (816)
Q Consensus 191 n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L----~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 265 (816)
|.+.+ .+|..++++++|++|++++|.+.+..+..+..+++| +.+++++|.+. .++...+. ..+|+.+++++|.
T Consensus 138 n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~-~~~L~~L~L~~n~ 215 (606)
T 3vq2_A 138 NFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQ-GIKLHELTLRGNF 215 (606)
T ss_dssp SCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTT-TCEEEEEEEESCC
T ss_pred CCCCCEECHHHHHHCCCCCEEECCCCCCEECCHHHHHHHHCCCCCCCEEECCCCCCC-EECCCCCC-CCEEEEEECCCCC
T ss_conf 852325306867326777788766885310573341212034200243004689753-25711056-7604335246785
Q ss_pred CC-CCCCHHHHCCCCCCEEECCCCCCCCCCC-----CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEC-CCC
Q ss_conf 77-5472111159998989920577767335-----1000588866666687864433434798778767438836-577
Q 003488 266 FT-GSIPSTIFELVNLTSIRLSSNNLSGHIE-----LCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGL-SAC 338 (816)
Q Consensus 266 l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~-----~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l-~~~ 338 (816)
+. +..+..+..++.++.+++..+.+.+... ...+..+..+ .++.+.+ ..+
T Consensus 216 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l-----------------------~l~~l~l~~~~ 272 (606)
T 3vq2_A 216 NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV-----------------------TIDEFRLTYTN 272 (606)
T ss_dssp SCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGS-----------------------EEEEEEECCCT
T ss_pred CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHC-----------------------CHHHEECCCCC
T ss_conf 6166778886026656523141111036774102681776666543-----------------------47450123665
Q ss_pred CCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 898-8981024885655540323423478880012038885336975898688878788999777964798587767889
Q 003488 339 NIS-EFPDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVL 417 (816)
Q Consensus 339 ~i~-~l~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 417 (816)
.+. .+|. +..+++|+.+++++|.+... + .+. .+++++.+++++|.+..++.. .
T Consensus 273 ~~~~~~~~-~~~l~~L~~L~l~~~~~~~l-~-~l~--~~~~L~~L~l~~n~l~~lp~~---------------------~ 326 (606)
T 3vq2_A 273 DFSDDIVK-FHCLANVSAMSLAGVSIKYL-E-DVP--KHFKWQSLSIIRCQLKQFPTL---------------------D 326 (606)
T ss_dssp TCCGGGGS-CGGGTTCSEEEEESCCCCCC-C-CCC--TTCCCSEEEEESCCCSSCCCC---------------------C
T ss_pred CCCCCCCC-CCCCCCCCEEEECCCCCHHH-H-HCC--CCCCCCEEECCCCCCCCCCCC---------------------C
T ss_conf 55543222-35488789877147660443-5-433--401177897646667654667---------------------8
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC--CCCHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 97751787037723443333456789989474889979999--9800113588879985588485577835559989648
Q 003488 418 PPRLIFFSISNNKLTGEIPCSFCTAAPIEFIDLSNNSLSGP--IPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVN 495 (816)
Q Consensus 418 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~--~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 495 (816)
.++|+.+++++|...+.. .+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|.+.+ .|..+..+++|+.
T Consensus 327 l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~ 403 (606)
T 3vq2_A 327 LPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQH 403 (606)
T ss_dssp CSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCE
T ss_pred CCCCCEEECCCCCCCCCH--HHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCC-CHHHCCCCCCCCE
T ss_conf 875564454478685310--0024898887977587368775201221467755486788995300-0554068888896
Q ss_pred EECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 9845882557787-025799999699876896788985111489998499866731422358995423678785561788
Q 003488 496 LILNDNQFEGPLP-QSLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSR 574 (816)
Q Consensus 496 L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~~~l~~L~~L~Ls~ 574 (816)
|++++|++.+..+ ..+..+++|++|++++|.+.+..|..+. .+++|+.|++++
T Consensus 404 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--------------------------~l~~L~~L~l~~ 457 (606)
T 3vq2_A 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL--------------------------GLTSLNTLKMAG 457 (606)
T ss_dssp EECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT--------------------------TCTTCCEEECTT
T ss_pred EECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHC--------------------------CCCCCCEEECCC
T ss_conf 589887058753764564621378898968978743355534--------------------------778789898989
Q ss_pred CCCCCC-CCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEEEEECCEECCCCCCCCEEEECCCCCCCCCCCHHHHCC
Q ss_conf 735556-8468876454533167886420110023443101279750440012122332089836883544584432177
Q 003488 575 NEFTGV-LPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKL 653 (816)
Q Consensus 575 N~l~~~-~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~n~l~~~ip~~l~~l 653 (816)
|.+.+. +|.. +..++.|+.|++++|++++.+|..+.++
T Consensus 458 n~l~~~~~~~~-----------------------------------------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 496 (606)
T 3vq2_A 458 NSFKDNTLSNV-----------------------------------------FANTTNLTFLDLSKCQLEQISWGVFDTL 496 (606)
T ss_dssp CEEGGGEECSC-----------------------------------------CTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred CCCCCCCHHHH-----------------------------------------HCCCCCCCEEECCCCCCCCCCHHHHCCC
T ss_conf 83798546776-----------------------------------------0457889989898885776486561546
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8896897357858666882411668779574888725355864667867-679385746856037999997886564533
Q 003488 654 NLLKMLNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLN-FLSKLNLSHNQLEGPIPQGPQFNTFQSDSY 732 (816)
Q Consensus 654 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~ 732 (816)
++|+.|+|++|++++.+|..++++++|+.|++++|+++ .+|..+..++ +|+.+++++|++.|.++... |..+-
T Consensus 497 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~-~~~~l---- 570 (606)
T 3vq2_A 497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQK-FLQWV---- 570 (606)
T ss_dssp TTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTHH-HHTTT----
T ss_pred CCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCCCCCCCHH-HHHHH----
T ss_conf 46898989899578748777068876898889898376-6687675210217488762898664776489-99998----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 57569989999999999999999
Q 003488 733 IGNLGLCGFPLSDKCSNIDDAQE 755 (816)
Q Consensus 733 ~~n~~lcg~~~~~~c~~~~~~~~ 755 (816)
..+......+....|..|...++
T Consensus 571 ~~~~~~~~~~~~~~C~~p~~~~~ 593 (606)
T 3vq2_A 571 KEQKQFLVNVEQMTCATPVEMNT 593 (606)
T ss_dssp TTSSSSBSSGGGCCCC-------
T ss_pred HCCCCCCCCCCCCEECCCHHHCC
T ss_conf 72764004776616597757689
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=411.38 Aligned_cols=512 Identities=22% Similarity=0.208 Sum_probs=238.8
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-HHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 99749991188688878824899999999983179799984-33322999998998427859888770036999866998
Q 003488 133 SSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHI-PSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQLSFLD 211 (816)
Q Consensus 133 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 211 (816)
+++++|++++|.+.+..+..+.++++|++|++++|...+.+ +..|.++++|++|++++|.+.+..|.+|..+++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEE
T ss_conf 98688888778678329667766213708867899774441977853787788887989958531976715786658701
Q ss_pred CCCCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCC--CCCCEEECCC
Q ss_conf 1169798679634--79999996898828979865643555099986599921885775472111159--9989899205
Q 003488 212 LSWNQLTGRLPSC--LKGLRNLVTLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGSIPSTIFEL--VNLTSIRLSS 287 (816)
Q Consensus 212 Ls~n~l~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~L~~ 287 (816)
+++|.+.+..+.. +..+++|++|++++|.+.+..+...+..+++|+.|++++|.+.+..+..+..+ ++|+.|+++.
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~ 183 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHCCCCCCCCCCEEECCC
T ss_conf 76788973404676455667999888987864232566557638898989898984776678875355677503578978
Q ss_pred CCCCCCCCCCCCCCCCC------CCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC---CCCCCCEEEC
Q ss_conf 77767335100058886------66666878644334347987787674388365778988981024---8856555403
Q 003488 288 NNLSGHIELCMFARLKN------LQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFPDFLR---SQDRLEWLQL 358 (816)
Q Consensus 288 n~l~~~~~~~~l~~~~~------L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~---~~~~L~~L~l 358 (816)
|.+.+..+. .+..+++ |+.|++++|.+.. .++..+. ....+..+.+
T Consensus 184 n~l~~~~~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~------------------------~~~~~~~~~l~~~~l~~L~l 238 (844)
T 3j0a_A 184 NSLYSRVSV-DWGKCMNPFRNMVLEILDVSGNGWTV------------------------DITGNFSNAISKSQAFSLIL 238 (844)
T ss_dssp SBSCCCCCC-CCCSSSCTTTTCCBSEEBCSSCCSST------------------------TTTSGGGGTSCSCCBSEEEC
T ss_pred CCCCCCCCC-CHHHCCCCCCCCCEEEEECCCCCCCH------------------------HHHHHHHHHCCCCCCCCEEC
T ss_conf 866655455-33223772235740079657886865------------------------67788876427441001121
Q ss_pred CCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCC-----CCCCCCCEEECCCCCCCCCCC---CCCCCCCEEECCCCC
Q ss_conf 234234788800120388853369758986888787-----889997779647985877678---899775178703772
Q 003488 359 SENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQ-----VPLKNLRFLDLRSNLLQGSVM---VLPPRLIFFSISNNK 430 (816)
Q Consensus 359 s~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~ 430 (816)
+.+.+.... ..+.+..... ...++++.|++++|.+.+..+ ..+++|+.|++++|.
T Consensus 239 ~~~~~~~~~-----------------~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 301 (844)
T 3j0a_A 239 AHHIMGAGF-----------------GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK 301 (844)
T ss_dssp CSSCCBCSS-----------------SCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC
T ss_pred CCCCCCCCC-----------------CCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCC
T ss_conf 212234664-----------------445668898556525554786189897994551586345258999999897981
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 34433334567899894748899799999800113588879985588485577835559989648984588255778702
Q 003488 431 LTGEIPCSFCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGPLPQS 510 (816)
Q Consensus 431 l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 510 (816)
+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++.
T Consensus 302 i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i---- 377 (844)
T 3j0a_A 302 INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI---- 377 (844)
T ss_dssp CCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC----
T ss_pred CCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC----
T ss_conf 8987968836888999898989978851878846899999898989987762866613788899988989977861----
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 57999996998768967889851114899984998667314223589954236787855617887355568468876454
Q 003488 511 LANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLK 590 (816)
Q Consensus 511 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~ 590 (816)
..+++|+.|++++|++.. +|.. ..+++.+++++|.+.+... ...+..+++|+.|++++|.+++..+...
T Consensus 378 -~~~~~L~~L~l~~N~l~~-l~~~---~~~l~~L~ls~N~l~~l~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----- 446 (844)
T 3j0a_A 378 -HFIPSIPDIFLSGNKLVT-LPKI---NLTANLIHLSENRLENLDI-LYFLLRVPHLQILILNQNRFSSCSGDQT----- 446 (844)
T ss_dssp -SSCCSCSEEEEESCCCCC-CCCC---CTTCCEEECCSCCCCSSTT-HHHHTTCTTCCEEEEESCCCCCCCSSSS-----
T ss_pred -CCCCCCCHHCCCCCCCCC-CCCC---CCCCCEEECCCCCCCCCCH-HHHHHCCCCCCEEECCCCCCCCCCCCCC-----
T ss_conf -688982320058997231-4554---5543122145675345755-6665127766666677871255554333-----
Q ss_pred HHHCCCCCCCCCEEECCCCCCCEEEEEEEECCEECCCCCCCCEEEECCCCCCC-----CCCCHHHHCCCCCCEEECCCCC
Q ss_conf 53316788642011002344310127975044001212233208983688354-----4584432177889689735785
Q 003488 591 AMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFE-----GQIPEVVGKLNLLKMLNFSHNH 665 (816)
Q Consensus 591 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~n~l~-----~~ip~~l~~l~~L~~L~Ls~N~ 665 (816)
...++.|+.|++++|.++ +..|..+.++++|+.|+|++|+
T Consensus 447 -----------------------------------~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 491 (844)
T 3j0a_A 447 -----------------------------------PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY 491 (844)
T ss_dssp -----------------------------------SCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHH
T ss_pred -----------------------------------CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCC
T ss_conf -----------------------------------566873100247777364410135535554475536577788985
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 866688241166877957488872535586466786767938574685603799999788656453357569989
Q 003488 666 LTGRIPSSLRNLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCG 740 (816)
Q Consensus 666 l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~~lcg 740 (816)
+++.+|..++.+++|+.|+|++|++++..|..+. ++|+.|++++|++++.+|.. |.......+.+|+..|+
T Consensus 492 l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~ 562 (844)
T 3j0a_A 492 LNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICE 562 (844)
T ss_dssp HTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCS
T ss_pred CCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHH--HCCCCEEEECCCCCCCC
T ss_conf 6553955704501221569999978745710110--04558889888478889668--37768899319970253
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=410.85 Aligned_cols=538 Identities=22% Similarity=0.201 Sum_probs=292.2
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHHCCCCCCE
Q ss_conf 99775999999999899001379899888799998986683433259999899678998864368767888512899888
Q 003488 32 LETLNLGSNDFNSSLISSGFGRLISLTHLNLSNSYFSGQIPSEISQLSKMLSLDLSKNDEVRIESPVWKGLIENLTKLKE 111 (816)
Q Consensus 32 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~ 111 (816)
-+.++.++..++. +|..+. .++++|++++|.+++..|..+.++++|++|++++|.+..+.... +.++++
T Consensus 14 ~~~~~c~~~~l~~--iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~--- 82 (606)
T 3t6q_A 14 NKTYNCENLGLNE--IPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT----FQSQHR--- 82 (606)
T ss_dssp TTEEECTTSCCSS--CCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTT----TTTCTT---
T ss_pred CCEEECCCCCCCC--CCCCCC--CCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHH----CCCCCC---
T ss_conf 7237777798062--867789--86758981587347179667256766528978898355248511----368433---
Q ss_pred EECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCC
Q ss_conf 85898558875512343103799749991188688878824899999999983179799984333229999989984278
Q 003488 112 LVLSEVDMSTIVLDYSLTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQN 191 (816)
Q Consensus 112 L~l~~~~~~~~~~~~~l~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 191 (816)
|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 83 -----------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n 139 (606)
T 3t6q_A 83 -----------------------LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN 139 (606)
T ss_dssp -----------------------CCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS
T ss_pred -----------------------CCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCC
T ss_conf -----------------------676448898565458655234421537652126766578101223782238988798
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC--EEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCC
Q ss_conf 59888770036999866998116979867963479999996--8988289798656435550999865999218857754
Q 003488 192 NLVGGIPDSFVNLTQLSFLDLSWNQLTGRLPSCLKGLRNLV--TLRLSGNSLNGTIPSWLFTVLPYLEVIHLRDNRFTGS 269 (816)
Q Consensus 192 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~--~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 269 (816)
.+.+.....+..+++|++|++++|.+.+..+..+..+++|+ .+++++|.+.+ ++...+. ...|+.+++++|. .
T Consensus 140 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~-~~~~~~~-~~~L~~L~l~~~~---~ 214 (606)
T 3t6q_A 140 HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFD-SAVFQSLNFGGTQ---N 214 (606)
T ss_dssp CCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE-ECTTTTT-TCEEEEEECTTCS---C
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCC-CCHHHHH-HCCCCCCCCCCCH---H
T ss_conf 341147654568765687776568445549656332215640389667981475-4866730-0100135567726---6
Q ss_pred CCHHHHCCCCCCEEECCCCCCCC----CCCCCCCCCCC--CCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 72111159998989920577767----33510005888--6666668786443343479877876743883657789889
Q 003488 270 IPSTIFELVNLTSIRLSSNNLSG----HIELCMFARLK--NLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEF 343 (816)
Q Consensus 270 ~~~~l~~l~~L~~L~L~~n~l~~----~~~~~~l~~~~--~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~~~i~~l 343 (816)
.+..+..+..+....+....+.+ .+....+..+. +++.+++++|.+... .......+++|+.+++++|.+.++
T Consensus 215 ~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~l 293 (606)
T 3t6q_A 215 LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI-SSNTFHCFSGLQELDLTATHLSEL 293 (606)
T ss_dssp HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSC-CTTTTTTCTTCSEEECTTSCCSCC
T ss_pred HHHHHHHCCCCCHHHEECHHHCCCCCCCCCHHHHCHHHCCCEEEEEEECCCCCCC-CHHHHCCCCCCCEEECCCCCCCCC
T ss_conf 7777651335644220020110264122686674303207505999445765855-777744566788895628826777
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCE
Q ss_conf 81024885655540323423478880012038885336975898688878788999777964798587767889977517
Q 003488 344 PDFLRSQDRLEWLQLSENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIF 423 (816)
Q Consensus 344 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~ 423 (816)
|..+..+++|++|++++|.+.+..+..+. . +++|+.
T Consensus 294 p~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~------------------------------------------l~~L~~ 329 (606)
T 3t6q_A 294 PSGLVGLSTLKKLVLSANKFENLCQISAS--N------------------------------------------FPSLTH 329 (606)
T ss_dssp CSSCCSCTTCCEEECTTCCCSBGGGGCGG--G------------------------------------------CTTCSE
T ss_pred CHHHCCCCCCCEEECCCCCCCCCCHHHHH--C------------------------------------------CCCCCE
T ss_conf 82141654688897716876867602330--1------------------------------------------576898
Q ss_pred EECCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCC--CCHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 87037723443333-4567899894748899799999--80011358887998558848557783555998964898458
Q 003488 424 FSISNNKLTGEIPC-SFCTAAPIEFIDLSNNSLSGPI--PECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILND 500 (816)
Q Consensus 424 L~l~~n~l~~~~~~-~~~~~~~L~~L~ls~n~l~~~~--p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 500 (816)
|++++|.+.+.++. .+..+++|+.|++++|.+.+.. +..+..+++|+.|++++|.+.+..+..+..+++|+.|++++
T Consensus 330 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 409 (606)
T 3t6q_A 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409 (606)
T ss_dssp EECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTT
T ss_pred EECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCC
T ss_conf 88989974443462455066758988788996664567522105678889898989967757888734774577687888
Q ss_pred CCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-CCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 825577870-257999996998768967889851114899984998667314223-589954236787855617887355
Q 003488 501 NQFEGPLPQ-SLANCSRLQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGL-IGNTDARVIFPKLRILDLSRNEFT 578 (816)
Q Consensus 501 n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~~~~~-~~~~~~~~~l~~L~~L~Ls~N~l~ 578 (816)
|.+.+..+. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+....+..+++|+.|++++|.++
T Consensus 410 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 489 (606)
T 3t6q_A 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489 (606)
T ss_dssp CCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCC
T ss_pred CCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCC
T ss_conf 86777565212417655888989898557768778737887888989899888543454312404887668879999667
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEEEEECCEECCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCE
Q ss_conf 56846887645453316788642011002344310127975044001212233208983688354458443217788968
Q 003488 579 GVLPTRYFQNLKAMMRGSNTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEGQIPEVVGKLNLLKM 658 (816)
Q Consensus 579 ~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~n~l~~~ip~~l~~l~~L~~ 658 (816)
+..|..+ ..++.|+.||+++|++++.+|..+.+++.| .
T Consensus 490 ~~~~~~~-----------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~ 527 (606)
T 3t6q_A 490 SIDQHAF-----------------------------------------TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-Y 527 (606)
T ss_dssp EECTTTT-----------------------------------------TTCTTCCEEECCSSCCCGGGGGGGTTCCSC-E
T ss_pred CCCHHHH-----------------------------------------CCCCCCCEEECCCCCCCCCCHHHHCCCCCC-E
T ss_conf 0686463-----------------------------------------265678889898980686896684756651-8
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 9735785866688241166877957488872535586
Q 003488 659 LNFSHNHLTGRIPSSLRNLTVLESLDLSSNRLVGQIP 695 (816)
Q Consensus 659 L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p 695 (816)
|++++|++++.+|..++.+++|+.|++++|.+.+..+
T Consensus 528 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 528 LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp EECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred EECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 9876894142687662567787889677998616677
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=400.26 Aligned_cols=499 Identities=20% Similarity=0.179 Sum_probs=277.0
Q ss_pred HHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 31037997499911886888788248999999999831797999843332299999899842785988877003699986
Q 003488 128 LTNLSSSLSYLHLTGCNLIGPIPASLANLPQLTSLSLSYNHFSGHIPSFLSHLKQLYYLNLEQNNLVGGIPDSFVNLTQL 207 (816)
Q Consensus 128 l~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 207 (816)
+.++ ++|++|++++|.+.+..+..+.++++|++|++++|.+++..|..|.++++|++|++++|.+.+..+..++.+++|
T Consensus 52 ~~~l-~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 130 (606)
T 3vq2_A 52 FSNF-SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130 (606)
T ss_dssp TTTC-TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTC
T ss_pred CCCC-CCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 5577-667488688773664397773060106886787985630485220786537888703775554451134898877
Q ss_pred CEEECCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCC----CCEEECCCCCCCCCCCHHHHCCCCCCE
Q ss_conf 699811697986-796347999999689882897986564355509998----659992188577547211115999898
Q 003488 208 SFLDLSWNQLTG-RLPSCLKGLRNLVTLRLSGNSLNGTIPSWLFTVLPY----LEVIHLRDNRFTGSIPSTIFELVNLTS 282 (816)
Q Consensus 208 ~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~----L~~L~L~~n~l~~~~~~~l~~l~~L~~ 282 (816)
++|++++|.+.+ .+|..+..+++|++|++++|.+.+..+..+.. +.+ +..+++++|.+++..+..+.. .+|+.
T Consensus 131 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~ 208 (606)
T 3vq2_A 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF-LRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHE 208 (606)
T ss_dssp CEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHH-HHHCTTCCCEEECTTCCCCEECTTTTTT-CEEEE
T ss_pred CEEECCCCCCCCEECHHHHHHCCCCCEEECCCCCCEECCHHHHHH-HHCCCCCCCEEECCCCCCCEECCCCCCC-CEEEE
T ss_conf 989687885232530686732677778876688531057334121-2034200243004689753257110567-60433
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCC--CCCEEEC-
Q ss_conf 99205777673351000588866666687864433434798778767438836577898898-1024885--6555403-
Q 003488 283 IRLSSNNLSGHIELCMFARLKNLQYLYLSQNRLSVNTKLDANSTFPKLLKLGLSACNISEFP-DFLRSQD--RLEWLQL- 358 (816)
Q Consensus 283 L~L~~n~l~~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~~~i~~l~-~~~~~~~--~L~~L~l- 358 (816)
+++++|.+.+......+.+++.++.+.+..+....... +..++ ..+..+. .++.+++
T Consensus 209 L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~-------------------l~~~~~~~~~~l~~l~l~~l~l~ 269 (606)
T 3vq2_A 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN-------------------LEIFEPSIMEGLCDVTIDEFRLT 269 (606)
T ss_dssp EEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC-------------------CSCCCGGGGTTGGGSEEEEEEEC
T ss_pred EECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-------------------CCCCCHHHHHHHHHCCHHHEECC
T ss_conf 52467856166778886026656523141111036774-------------------10268177666654347450123
Q ss_pred CCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 23423478880012038885336975898688878788999777964798587767889977517870377234433334
Q 003488 359 SENKIYGRIPNWFWDIGKDTLYNLNLSDNFLTDVEQVPLKNLRFLDLRSNLLQGSVMVLPPRLIFFSISNNKLTGEIPCS 438 (816)
Q Consensus 359 s~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 438 (816)
..+.+.+.++. +. .+++++.+++++|.+.. ++ .
T Consensus 270 ~~~~~~~~~~~-~~--------------------------------------------~l~~L~~L~l~~~~~~~-l~-~ 302 (606)
T 3vq2_A 270 YTNDFSDDIVK-FH--------------------------------------------CLANVSAMSLAGVSIKY-LE-D 302 (606)
T ss_dssp CCTTCCGGGGS-CG--------------------------------------------GGTTCSEEEEESCCCCC-CC-C
T ss_pred CCCCCCCCCCC-CC--------------------------------------------CCCCCCEEEECCCCCHH-HH-H
T ss_conf 66555543222-35--------------------------------------------48878987714766044-35-4
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC--CCCCCCCCCC
Q ss_conf 56789989474889979999980011358887998558848557783555998964898458825577--8702579999
Q 003488 439 FCTAAPIEFIDLSNNSLSGPIPECLVDSITLIWLDLHLNSFNGSIPQISANGSGLVNLILNDNQFEGP--LPQSLANCSR 516 (816)
Q Consensus 439 ~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~ 516 (816)
+..+++|+.|++++|.+ +.+|. + .+++|+.|++++|...+.. .+..+++|+.|++++|.+++. .+..+..+++
T Consensus 303 l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~ 377 (606)
T 3vq2_A 303 VPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377 (606)
T ss_dssp CCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSC
T ss_pred CCCCCCCCEEECCCCCC-CCCCC-C-CCCCCCEEECCCCCCCCCH--HHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCC
T ss_conf 33401177897646667-65466-7-8875564454478685310--002489888797758736877520122146775
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 96998768967889851114899984998667314223589954236787855617887355568468876454533167
Q 003488 517 LQVLNVANNRIDDTFPHWLAQLPELLVLILRSNKFYGLIGNTDARVIFPKLRILDLSRNEFTGVLPTRYFQNLKAMMRGS 596 (816)
Q Consensus 517 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~ 596 (816)
|++|++++|.+.+ .|..+..+++|+.|++++|.+.+..+ ...+..+++|+.|++++|.+.+..|..+
T Consensus 378 L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~----------- 444 (606)
T 3vq2_A 378 LRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTE-FSAFLSLEKLLYLDISYTNTKIDFDGIF----------- 444 (606)
T ss_dssp CCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTT-TTTTTTCTTCCEEECTTSCCEECCTTTT-----------
T ss_pred CCEEECCCCCCCC-CHHHCCCCCCCCEEECCCCCCCCCCC-HHHHHCCCCCCEEECCCCCCCCCCHHHH-----------
T ss_conf 5486788995300-05540688888965898870587537-6456462137889896897874335553-----------
Q ss_pred CCCCCCEEECCCCCCCEEEEEEEECCEECCCCCCCCEEEECCCCCCCC-CCCHHHHCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 886420110023443101279750440012122332089836883544-5844321778896897357858666882411
Q 003488 597 NTSTVQVQYMHRFGRYYSAFFTLKGIDVEMNILSIFLVIDFSSNRFEG-QIPEVVGKLNLLKMLNFSHNHLTGRIPSSLR 675 (816)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~n~l~~-~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~ 675 (816)
..++.|+.|++++|.+++ .+|..++.+++|+.|+|++|++++.+|..++
T Consensus 445 ------------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 494 (606)
T 3vq2_A 445 ------------------------------LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 494 (606)
T ss_dssp ------------------------------TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred ------------------------------CCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHC
T ss_conf ------------------------------47787898989898379854677604578899898988857764865615
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6687795748887253558646678676793857468560379999978865645335756998999999999
Q 003488 676 NLTVLESLDLSSNRLVGQIPTQLTSLNFLSKLNLSHNQLEGPIPQGPQFNTFQSDSYIGNLGLCGFPLSDKCS 748 (816)
Q Consensus 676 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~~lcg~~~~~~c~ 748 (816)
.+++|+.|++++|++++.+|..+..+++|+.|++++|+++ .+|.. +..++. ......+.|+|+.|.|.
T Consensus 495 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~--~~~l~~--~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 495 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGI--LQHFPK--SLAFFNLTNNSVACICE 562 (606)
T ss_dssp TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESC--GGGSCT--TCCEEECCSCCCCCSST
T ss_pred CCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCC-CCCHH--HHHHCC--CCCEEECCCCCCCCCCC
T ss_conf 4646898989899578748777068876898889898376-66876--752102--17488762898664776
Done!