Query 003489
Match_columns 816
No_of_seqs 436 out of 3913
Neff 8.7
Searched_HMMs 29240
Date Tue Mar 26 22:32:23 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/003489.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_117-121//hhsearch_pdb/003489hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 1.0 1 1 397.6 18.6 262 494-774 40-320 (329)
2 4asz_A BDNF/NT-3 growth factor 1.0 1 1 396.4 14.7 264 494-776 12-292 (299)
3 4gt4_A Tyrosine-protein kinase 1.0 1 1 389.6 17.2 258 495-771 26-304 (308)
4 4ase_A Vascular endothelial gr 1.0 1 1 380.9 15.0 275 483-775 52-349 (353)
5 3omv_A RAF proto-oncogene seri 1.0 1 1 379.9 19.6 265 494-777 35-304 (307)
6 4fie_A Serine/threonine-protei 1.0 1 1 373.2 18.6 250 494-766 150-400 (423)
7 4b9d_A Serine/threonine-protei 1.0 1 1 372.9 16.2 250 495-766 24-276 (350)
8 4fih_A Serine/threonine-protei 1.0 1 1 372.5 18.4 250 494-766 73-323 (346)
9 4g3f_A NF-kappa-beta-inducing 1.0 1 1 369.7 18.9 265 494-783 57-326 (336)
10 3hmm_A TGF-beta receptor type- 1.0 1 1 367.5 17.5 269 495-773 3-297 (303)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=397.61 Aligned_cols=262 Identities=26% Similarity=0.415 Sum_probs=217.7
Q ss_pred HCCCCCCCCCCCCCCEEEEEEEEC------CCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCE
Q ss_conf 318421121377985529985862------88279999815347300799999999984149983112346987258535
Q 003489 494 TNNFQLANKLGQGGFGPVYKGKLQ------DGQEIAVKRLSKASGQGQEEFMNEVMVISNLQHRNLVRLLGCCVEREENM 567 (816)
Q Consensus 494 ~~~f~~~~~LG~G~~g~Vy~g~~~------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~g~~~~~~~~~ 567 (816)
.++|.+.++||+|+||.||+|++. ++..||||+++.......+.|.+|+++|++++|||||+++|+|.+....+
T Consensus 40 ~~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~ 119 (329)
T 4aoj_A 40 RRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLL 119 (329)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEE
T ss_pred HHHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEE
T ss_conf 89928877971477848998998786657789699999977579799999999999998589989996989999899899
Q ss_pred EEEEECCCCCCCCCCCCCC------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEECCCCC
Q ss_conf 9993079999430015989------------9998996679989999999999977259974899420888289738999
Q 003489 568 LIYEYMPNKSLDSFLFDPQ------------RQSLLDWPKRFNIIKGISRGLLYLHRDSRLRIIHRDLKASNILLDDDLN 635 (816)
Q Consensus 568 lV~e~~~~gsL~~~l~~~~------------~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~ivH~Dlkp~NILl~~~~~ 635 (816)
+||||+++|+|.++|+... ...+++|.+++.|+.|||.||+|||+.+ |+||||||+|||+++++.
T Consensus 120 lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLKp~NILl~~~~~ 196 (329)
T 4aoj_A 120 MVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH---FVHRDLATRNCLVGQGLV 196 (329)
T ss_dssp EEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTTE
T ss_pred EEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC---EECCCCCHHHEEECCCCC
T ss_conf 99982799939999986075410012211245788999999999999999999984088---422666676489889996
Q ss_pred CEEECCCCCEECCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHHH
Q ss_conf 44403443022189876332023345566448100025999950236879899999883-99899988313343198998
Q 003489 636 PKISDFGLARIFGGNQDQAATKRLVGTYGYMSPEYAMEGRFSEKSDVFSFGVLLLEIVS-GRKNTSFYHEEFELTLLGYA 714 (816)
Q Consensus 636 ~kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDVwSlGvil~ellt-G~~p~~~~~~~~~~~l~~~~ 714 (816)
+||+|||+++...............||+.|||||++....++.++|||||||++|||+| |+.||........ ...+
T Consensus 197 ~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~---~~~i 273 (329)
T 4aoj_A 197 VKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEA---IDCI 273 (329)
T ss_dssp EEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHH---HHHH
T ss_pred EEECCCCCCEECCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHH---HHHH
T ss_conf 8976660333656787530047645565665826544799996630010578999998289999999899999---9999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 774126870112243112455089999999999885312878999968999997101257
Q 003489 715 WKLWNDNNVIDLVDPLISESGFKMEIIRCVNVGLLCVQEFVKDRPNMPTVVSMLNSEIKD 774 (816)
Q Consensus 715 ~~~~~~~~~~~l~d~~l~~~~~~~~~~~l~~l~~~Cl~~dP~~RPt~~evl~~L~~~~~~ 774 (816)
. .+..... +....+.+.+++.+||+.||++||||.||+++|+.+.+.
T Consensus 274 ~----~g~~~~~---------p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~ 320 (329)
T 4aoj_A 274 T----QGRELER---------PRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQA 320 (329)
T ss_dssp H----HTCCCCC---------CTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred H----CCCCCCC---------CCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHC
T ss_conf 8----0898998---------644639999999997475965792999999999987458
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=396.38 Aligned_cols=264 Identities=28% Similarity=0.459 Sum_probs=218.0
Q ss_pred HCCCCCCCCCCCCCCEEEEEEEEC------CCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCE
Q ss_conf 318421121377985529985862------88279999815347300799999999984149983112346987258535
Q 003489 494 TNNFQLANKLGQGGFGPVYKGKLQ------DGQEIAVKRLSKASGQGQEEFMNEVMVISNLQHRNLVRLLGCCVEREENM 567 (816)
Q Consensus 494 ~~~f~~~~~LG~G~~g~Vy~g~~~------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~g~~~~~~~~~ 567 (816)
.++|.+.++||+|+||.||+|++. ++..||||+++.......+.|.+|+++|++++|||||+++|+|.+.+..+
T Consensus 12 r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~ 91 (299)
T 4asz_A 12 RHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLI 91 (299)
T ss_dssp GGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEE
T ss_pred HHHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEE
T ss_conf 88929824982078829999998776667788799999967778589999999999998589988862879995699899
Q ss_pred EEEEECCCCCCCCCCCCC----------CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEECCCCCCE
Q ss_conf 999307999943001598----------9999899667998999999999997725997489942088828973899944
Q 003489 568 LIYEYMPNKSLDSFLFDP----------QRQSLLDWPKRFNIIKGISRGLLYLHRDSRLRIIHRDLKASNILLDDDLNPK 637 (816)
Q Consensus 568 lV~e~~~~gsL~~~l~~~----------~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~ivH~Dlkp~NILl~~~~~~k 637 (816)
+||||+++|+|.++|+.. .....++|.+++.++.||+.||+|||+.+ |+||||||+|||+++++.+|
T Consensus 92 lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDlKp~NILl~~~~~~K 168 (299)
T 4asz_A 92 MVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQH---FVHRDLATRNCLVGENLLVK 168 (299)
T ss_dssp EEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEE
T ss_pred EEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEE
T ss_conf 999858999689999860864211123577788999999999999999999997599---04676577638987998689
Q ss_pred EECCCCCEECCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 403443022189876332023345566448100025999950236879899999883-9989998831334319899877
Q 003489 638 ISDFGLARIFGGNQDQAATKRLVGTYGYMSPEYAMEGRFSEKSDVFSFGVLLLEIVS-GRKNTSFYHEEFELTLLGYAWK 716 (816)
Q Consensus 638 l~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDVwSlGvil~ellt-G~~p~~~~~~~~~~~l~~~~~~ 716 (816)
|+|||+++...............||+.|||||++....++.++||||||+++|||+| |+.||....... +...+.
T Consensus 169 i~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~---~~~~i~- 244 (299)
T 4asz_A 169 IGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNE---VIECIT- 244 (299)
T ss_dssp ECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH---HHHHHH-
T ss_pred ECCCCCCEECCCCCCEEECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHH---HHHHHH-
T ss_conf 8873001006788741664751347010388987079997036677889999999808999999989999---999998-
Q ss_pred HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 412687011224311245508999999999988531287899996899999710125799
Q 003489 717 LWNDNNVIDLVDPLISESGFKMEIIRCVNVGLLCVQEFVKDRPNMPTVVSMLNSEIKDLP 776 (816)
Q Consensus 717 ~~~~~~~~~l~d~~l~~~~~~~~~~~l~~l~~~Cl~~dP~~RPt~~evl~~L~~~~~~l~ 776 (816)
.+..... +......+.+++.+||+.||++||||.||++.|+++.+..|
T Consensus 245 ---~~~~~~~---------p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~~p 292 (299)
T 4asz_A 245 ---QGRVLQR---------PRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKASP 292 (299)
T ss_dssp ---HTCCCCC---------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHSC
T ss_pred ---CCCCCCC---------CCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHCCC
T ss_conf ---0898899---------74143999999999768796689299999999987776397
No 3
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=389.58 Aligned_cols=258 Identities=31% Similarity=0.469 Sum_probs=211.5
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEC------CCCEEEEEEECCCC-CHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCE
Q ss_conf 18421121377985529985862------88279999815347-300799999999984149983112346987258535
Q 003489 495 NNFQLANKLGQGGFGPVYKGKLQ------DGQEIAVKRLSKAS-GQGQEEFMNEVMVISNLQHRNLVRLLGCCVEREENM 567 (816)
Q Consensus 495 ~~f~~~~~LG~G~~g~Vy~g~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~g~~~~~~~~~ 567 (816)
.++++.++||+|+||.||+|.+. +++.||||+++... ....+.|.+|+.++++++|||||+++|+|.+....+
T Consensus 26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~ 105 (308)
T 4gt4_A 26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLS 105 (308)
T ss_dssp GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred HHCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEE
T ss_conf 88858669135888489999985776588886999999880149689999999999998589989877364998899889
Q ss_pred EEEEECCCCCCCCCCCCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEECCCC
Q ss_conf 99930799994300159899-------------99899667998999999999997725997489942088828973899
Q 003489 568 LIYEYMPNKSLDSFLFDPQR-------------QSLLDWPKRFNIIKGISRGLLYLHRDSRLRIIHRDLKASNILLDDDL 634 (816)
Q Consensus 568 lV~e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~ivH~Dlkp~NILl~~~~ 634 (816)
+||||+++|+|.++|+.... ...++|.++++++.|||.||+|||+.+ |+||||||+|||+++++
T Consensus 106 lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLK~~NILl~~~~ 182 (308)
T 4gt4_A 106 MIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH---VVHKDLATRNVLVYDKL 182 (308)
T ss_dssp EEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGG
T ss_pred EEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCEEECCCC
T ss_conf 999818999499999862765433332211112468999999999999999999998689---97787362306887999
Q ss_pred CCEEECCCCCEECCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHH
Q ss_conf 944403443022189876332023345566448100025999950236879899999883-9989998831334319899
Q 003489 635 NPKISDFGLARIFGGNQDQAATKRLVGTYGYMSPEYAMEGRFSEKSDVFSFGVLLLEIVS-GRKNTSFYHEEFELTLLGY 713 (816)
Q Consensus 635 ~~kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDVwSlGvil~ellt-G~~p~~~~~~~~~~~l~~~ 713 (816)
.+||+|||+++...............||+.|||||++....++.++||||||+++|||+| |+.||....... +...
T Consensus 183 ~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~---~~~~ 259 (308)
T 4gt4_A 183 NVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQD---VVEM 259 (308)
T ss_dssp CEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHH---HHHH
T ss_pred CEEECCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHH---HHHH
T ss_conf 7898876020233677740473451257765698998279999630001579999999968999999989999---9999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCC
Q ss_conf 8774126870112243112455089999999999885312878999968999997101
Q 003489 714 AWKLWNDNNVIDLVDPLISESGFKMEIIRCVNVGLLCVQEFVKDRPNMPTVVSMLNSE 771 (816)
Q Consensus 714 ~~~~~~~~~~~~l~d~~l~~~~~~~~~~~l~~l~~~Cl~~dP~~RPt~~evl~~L~~~ 771 (816)
+ ..+..... +......+.+++.+||+.||++||||.||+++|+..
T Consensus 260 i----~~~~~~~~---------p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 260 I----RNRQVLPC---------PDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp H----HTTCCCCC---------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred H----HCCCCCCC---------CCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHC
T ss_conf 9----81998999---------620369999999997587965792999999999853
No 4
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=380.88 Aligned_cols=275 Identities=26% Similarity=0.379 Sum_probs=219.2
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECC------CCEEEEEEECCCCC-HHHHHHHHHHHHHHHCCC-CCEE
Q ss_conf 445989999983184211213779855299858628------82799998153473-007999999999841499-8311
Q 003489 483 LVFNFEELANATNNFQLANKLGQGGFGPVYKGKLQD------GQEIAVKRLSKASG-QGQEEFMNEVMVISNLQH-RNLV 554 (816)
Q Consensus 483 ~~~~~~~l~~~~~~f~~~~~LG~G~~g~Vy~g~~~~------~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~H-~niv 554 (816)
..+...+.+...++|++.+.||+|+||.||+|.+.. ++.||||.+..... ...+.|.+|+.+|.+++| ||||
T Consensus 52 lp~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV 131 (353)
T 4ase_A 52 LPYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVV 131 (353)
T ss_dssp SCCCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred CCCCCCCCEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 89888551705799598209821789599999986888544775999999762358689999999999999757998487
Q ss_pred EEEEEEEEC-CCCEEEEEECCCCCCCCCCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 234698725-85359993079999430015989-------------9998996679989999999999977259974899
Q 003489 555 RLLGCCVER-EENMLIYEYMPNKSLDSFLFDPQ-------------RQSLLDWPKRFNIIKGISRGLLYLHRDSRLRIIH 620 (816)
Q Consensus 555 ~l~g~~~~~-~~~~lV~e~~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~ivH 620 (816)
+++|+|.+. ...++||||+++|+|.++|+... ....+++.+++.++.|||.||+|||+.+ |+|
T Consensus 132 ~l~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~---iiH 208 (353)
T 4ase_A 132 NLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIH 208 (353)
T ss_dssp CEEEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTT---CCC
T ss_pred EEEEEEEECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC---EEC
T ss_conf 78899994697799999838989799999743566654333410110356899999999999999987676278---435
Q ss_pred EEECCCCEEECCCCCCEEECCCCCEECCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCC
Q ss_conf 42088828973899944403443022189876332023345566448100025999950236879899999883-99899
Q 003489 621 RDLKASNILLDDDLNPKISDFGLARIFGGNQDQAATKRLVGTYGYMSPEYAMEGRFSEKSDVFSFGVLLLEIVS-GRKNT 699 (816)
Q Consensus 621 ~Dlkp~NILl~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDVwSlGvil~ellt-G~~p~ 699 (816)
|||||+|||+++++.+||+|||+|+.+.............||+.|||||++....++.++|||||||++|||+| |+.||
T Consensus 209 RDLK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf 288 (353)
T 4ase_A 209 RDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPY 288 (353)
T ss_dssp SCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSS
T ss_pred CCCCCCCEEECCCCCEEECCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCC
T ss_conf 74672113057999789796543222456887203254014666569899946999975537406899999981899999
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 9883133431989987741268701122431124550899999999998853128789999689999971012579
Q 003489 700 SFYHEEFELTLLGYAWKLWNDNNVIDLVDPLISESGFKMEIIRCVNVGLLCVQEFVKDRPNMPTVVSMLNSEIKDL 775 (816)
Q Consensus 700 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~d~~l~~~~~~~~~~~l~~l~~~Cl~~dP~~RPt~~evl~~L~~~~~~l 775 (816)
........ +.... ..+..... +....+.+.+++.+||+.||++|||+.||++.|++++++.
T Consensus 289 ~~~~~~~~--~~~~i----~~g~~~~~---------p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~~ 349 (353)
T 4ase_A 289 PGVKIDEE--FCRRL----KEGTRMRA---------PDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN 349 (353)
T ss_dssp TTCCCSHH--HHHHH----HHTCCCCC---------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHH--HHHHH----HCCCCCCC---------CCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99898999--99999----73898888---------8657899999999976869667939999999999999875
No 5
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=379.88 Aligned_cols=265 Identities=28% Similarity=0.459 Sum_probs=209.8
Q ss_pred HCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEECCC--CCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEE
Q ss_conf 3184211213779855299858628827999981534--73007999999999841499831123469872585359993
Q 003489 494 TNNFQLANKLGQGGFGPVYKGKLQDGQEIAVKRLSKA--SGQGQEEFMNEVMVISNLQHRNLVRLLGCCVEREENMLIYE 571 (816)
Q Consensus 494 ~~~f~~~~~LG~G~~g~Vy~g~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~e 571 (816)
.+++++.++||+|+||.||+|+++ ..||||+++.. .....+.|.+|+.++++++|||||+++|++.+ +..++|||
T Consensus 35 ~~~l~l~~~iG~G~fG~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmE 111 (307)
T 3omv_A 35 ASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQ 111 (307)
T ss_dssp TTSCCEEEECCCCSSSEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEE
T ss_pred HHHEEEEEEEEECCCCEEEEEEEC--CCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CEEEEEEE
T ss_conf 799498449820888689999989--968999997268999999999999999985899887469999978-95899997
Q ss_pred ECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEECCCCCCEEECCCCCEECCCCC
Q ss_conf 07999943001598999989966799899999999999772599748994208882897389994440344302218987
Q 003489 572 YMPNKSLDSFLFDPQRQSLLDWPKRFNIIKGISRGLLYLHRDSRLRIIHRDLKASNILLDDDLNPKISDFGLARIFGGNQ 651 (816)
Q Consensus 572 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~ivH~Dlkp~NILl~~~~~~kl~Dfgla~~~~~~~ 651 (816)
|+++|+|.++|+.. ...+++.+++.|+.|||.||+|||+.+ |+||||||+|||+++++.+||+|||+|+......
T Consensus 112 y~~gGsL~~~l~~~--~~~l~~~~~~~i~~qia~gL~yLH~~~---IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~ 186 (307)
T 3omv_A 112 WCEGSSLYKHLHVQ--ETKFQMFQLIDIARQTAQGMDYLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWS 186 (307)
T ss_dssp CCSSCBHHHHHHTS--CCCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCCSSSEEEETTEEEEECCCSSCBC-----
T ss_pred CCCCCCHHHHHHHC--CCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEEECCCCEECCCCC
T ss_conf 48998788987524--899999999999999999999997799---5278557899788899908994415754246677
Q ss_pred CCCCCCCCCCCCCCCCHHCCCC---CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 6332023345566448100025---9999502368798999998839989998831334319899877412687011224
Q 003489 652 DQAATKRLVGTYGYMSPEYAME---GRFSEKSDVFSFGVLLLEIVSGRKNTSFYHEEFELTLLGYAWKLWNDNNVIDLVD 728 (816)
Q Consensus 652 ~~~~~~~~~gt~~y~aPE~~~~---~~~s~ksDVwSlGvil~elltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~l~d 728 (816)
........+||+.|||||++.. ..++.++|||||||++|||+||+.||.......... .........
T Consensus 187 ~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~--~~~~~~~~~-------- 256 (307)
T 3omv_A 187 GSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQII--FMVGRGYAS-------- 256 (307)
T ss_dssp -------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHH--HHHHTTCCC--------
T ss_pred CCEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH--HHHHCCCCC--------
T ss_conf 6403156446877249878614689987868775728999999997889989999699999--999658888--------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 3112455089999999999885312878999968999997101257998
Q 003489 729 PLISESGFKMEIIRCVNVGLLCVQEFVKDRPNMPTVVSMLNSEIKDLPA 777 (816)
Q Consensus 729 ~~l~~~~~~~~~~~l~~l~~~Cl~~dP~~RPt~~evl~~L~~~~~~l~~ 777 (816)
|.+. .........+.+++.+||+.+|++||||.||++.|+.+...+|.
T Consensus 257 p~~~-~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~lpk 304 (307)
T 3omv_A 257 PDLS-KLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLPK 304 (307)
T ss_dssp CCST-TSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTCCC
T ss_pred CCCC-CCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHCCCCC
T ss_conf 8720-03544569999999997577976890989999999997450789
No 6
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=373.25 Aligned_cols=250 Identities=22% Similarity=0.326 Sum_probs=207.5
Q ss_pred HCCCCCCCCCCCCCCEEEEEEEEC-CCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEEE
Q ss_conf 318421121377985529985862-8827999981534730079999999998414998311234698725853599930
Q 003489 494 TNNFQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKASGQGQEEFMNEVMVISNLQHRNLVRLLGCCVEREENMLIYEY 572 (816)
Q Consensus 494 ~~~f~~~~~LG~G~~g~Vy~g~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~e~ 572 (816)
.+.|++.++||+|+||.||+++.. +++.||||++........+.+.+|+.+|+.++|||||++++++.+.+..|+||||
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy 229 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF 229 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred HHHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 68438616962481848999999999989999998625546899999999999857998987168999989999999969
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEECCCCCCEEECCCCCEECCCCCC
Q ss_conf 79999430015989999899667998999999999997725997489942088828973899944403443022189876
Q 003489 573 MPNKSLDSFLFDPQRQSLLDWPKRFNIIKGISRGLLYLHRDSRLRIIHRDLKASNILLDDDLNPKISDFGLARIFGGNQD 652 (816)
Q Consensus 573 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~ivH~Dlkp~NILl~~~~~~kl~Dfgla~~~~~~~~ 652 (816)
+++|+|.+++.. ..+++.++..++.||+.||+|||+++ |+||||||+|||++.++.+||+|||+|+.+....
T Consensus 230 ~~gG~L~~~i~~----~~l~e~~~~~~~~qil~aL~ylH~~~---IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~- 301 (423)
T 4fie_A 230 LEGGALTDIVTH----TRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV- 301 (423)
T ss_dssp CTTEEHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSTTTEEECTTCCEEECCCTTCEECCSSC-
T ss_pred CCCCCHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCCHHHEEECCCCCEEEECCCCCEECCCCC-
T ss_conf 899828988761----69899999999999999999999889---0446578777898589998980372654777887-
Q ss_pred CCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 33202334556644810002599995023687989999988399899988313343198998774126870112243112
Q 003489 653 QAATKRLVGTYGYMSPEYAMEGRFSEKSDVFSFGVLLLEIVSGRKNTSFYHEEFELTLLGYAWKLWNDNNVIDLVDPLIS 732 (816)
Q Consensus 653 ~~~~~~~~gt~~y~aPE~~~~~~~s~ksDVwSlGvil~elltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~l~d~~l~ 732 (816)
......+||+.|||||++....|+.++||||+||++|||++|+.||......... ..+... ..+.+.
T Consensus 302 -~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~---~~i~~~---------~~~~~~ 368 (423)
T 4fie_A 302 -PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAM---KMIRDN---------LPPRLK 368 (423)
T ss_dssp -CCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHH---HHHHHS---------CCCCCS
T ss_pred -CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH---HHHHCC---------CCCCCC
T ss_conf -6434666474727999977999996899999999999999787998986999999---999727---------998876
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 4550899999999998853128789999689999
Q 003489 733 ESGFKMEIIRCVNVGLLCVQEFVKDRPNMPTVVS 766 (816)
Q Consensus 733 ~~~~~~~~~~l~~l~~~Cl~~dP~~RPt~~evl~ 766 (816)
. .......+.+++.+||+.||++|||+.|+++
T Consensus 369 ~--~~~~s~~~~dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 369 N--LHKVSPSLKGFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp C--TTSSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred C--CCCCCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf 5--0129999999999986789568909999960
No 7
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=372.93 Aligned_cols=250 Identities=22% Similarity=0.344 Sum_probs=205.7
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEC-CCCEEEEEEECCC--CCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEE
Q ss_conf 18421121377985529985862-8827999981534--73007999999999841499831123469872585359993
Q 003489 495 NNFQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKA--SGQGQEEFMNEVMVISNLQHRNLVRLLGCCVEREENMLIYE 571 (816)
Q Consensus 495 ~~f~~~~~LG~G~~g~Vy~g~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~e 571 (816)
++|++.++||+|+||.||+++.. +++.||||++... .....+.+.+|+.++++++|||||++++++.+.+..++|||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 25588479702779399999988999899999986587897999999999999987799898919999998999999994
Q ss_pred ECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEECCCCCCEEECCCCCEECCCCC
Q ss_conf 07999943001598999989966799899999999999772599748994208882897389994440344302218987
Q 003489 572 YMPNKSLDSFLFDPQRQSLLDWPKRFNIIKGISRGLLYLHRDSRLRIIHRDLKASNILLDDDLNPKISDFGLARIFGGNQ 651 (816)
Q Consensus 572 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~ivH~Dlkp~NILl~~~~~~kl~Dfgla~~~~~~~ 651 (816)
|+++|+|.++|... ....+++.+++.++.||+.||+|||+++ |+||||||+|||+++++.+||+|||+|+.+..
T Consensus 104 y~~gg~L~~~i~~~-~~~~~~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~-- 177 (350)
T 4b9d_A 104 YCEGGDLFKRINAQ-KGVLFQEDQILDWFVQICLALKHVHDRK---ILHRDIKSQNIFLTKDGTVQLGDFGIARVLNS-- 177 (350)
T ss_dssp CCTTCBHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHHHHHHTT---CEETTCCGGGEEECTTCCEEECSTTEESCCCH--
T ss_pred CCCCCCHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHCC---EEECCCCHHHEEECCCCCEEECCCCCCEEECC--
T ss_conf 88998399999973-8999978999999999999999999899---15135978997987899989764652144068--
Q ss_pred CCCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 63320233455664481000259999502368798999998839989998831334319899877412687011224311
Q 003489 652 DQAATKRLVGTYGYMSPEYAMEGRFSEKSDVFSFGVLLLEIVSGRKNTSFYHEEFELTLLGYAWKLWNDNNVIDLVDPLI 731 (816)
Q Consensus 652 ~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDVwSlGvil~elltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~l~d~~l 731 (816)
........+||+.|||||++.+..|+.++||||+||++|||++|+.||........ ...+.. +.... +
T Consensus 178 ~~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~---~~~i~~----~~~~~-----~ 245 (350)
T 4b9d_A 178 TVELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNL---VLKIIS----GSFPP-----V 245 (350)
T ss_dssp HHHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHH---HHHHHH----TCCCC-----C
T ss_pred CCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHH---HHHHHC----CCCCC-----C
T ss_conf 85410145788360399998799989599999999999999978799899699999---999980----89999-----9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 24550899999999998853128789999689999
Q 003489 732 SESGFKMEIIRCVNVGLLCVQEFVKDRPNMPTVVS 766 (816)
Q Consensus 732 ~~~~~~~~~~~l~~l~~~Cl~~dP~~RPt~~evl~ 766 (816)
. ......+.+++.+||+.||++|||+.|+++
T Consensus 246 ~----~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 246 S----LHYSYDLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp C----TTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred C----CCCCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf 7----557999999999985589667908999963
No 8
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=372.50 Aligned_cols=250 Identities=22% Similarity=0.322 Sum_probs=207.4
Q ss_pred HCCCCCCCCCCCCCCEEEEEEEEC-CCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEEE
Q ss_conf 318421121377985529985862-8827999981534730079999999998414998311234698725853599930
Q 003489 494 TNNFQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKASGQGQEEFMNEVMVISNLQHRNLVRLLGCCVEREENMLIYEY 572 (816)
Q Consensus 494 ~~~f~~~~~LG~G~~g~Vy~g~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~e~ 572 (816)
...|++.++||+|+||.||+++.. +++.||||++........+.+.+|+.+|+.++|||||++++++.+.+..++||||
T Consensus 73 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 152 (346)
T 4fih_A 73 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF 152 (346)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred HHHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 57538707960272829999999899989999998527656899999999999867998999199999989999999969
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEECCCCCCEEECCCCCEECCCCCC
Q ss_conf 79999430015989999899667998999999999997725997489942088828973899944403443022189876
Q 003489 573 MPNKSLDSFLFDPQRQSLLDWPKRFNIIKGISRGLLYLHRDSRLRIIHRDLKASNILLDDDLNPKISDFGLARIFGGNQD 652 (816)
Q Consensus 573 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~ivH~Dlkp~NILl~~~~~~kl~Dfgla~~~~~~~~ 652 (816)
+++|+|.+++.. ..+++.++..++.||+.||+|||+++ |+||||||+|||++.++.+||+|||+++.+....
T Consensus 153 ~~gg~L~~~l~~----~~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~- 224 (346)
T 4fih_A 153 LEGGALTDIVTH----TRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV- 224 (346)
T ss_dssp CTTEEHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSSS-
T ss_pred CCCCCHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEECCCCCEECCCCC-
T ss_conf 899808999871----89899999999999999999999888---3556278899788799988990275753667887-
Q ss_pred CCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 33202334556644810002599995023687989999988399899988313343198998774126870112243112
Q 003489 653 QAATKRLVGTYGYMSPEYAMEGRFSEKSDVFSFGVLLLEIVSGRKNTSFYHEEFELTLLGYAWKLWNDNNVIDLVDPLIS 732 (816)
Q Consensus 653 ~~~~~~~~gt~~y~aPE~~~~~~~s~ksDVwSlGvil~elltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~l~d~~l~ 732 (816)
......+||+.|||||++....|+.++||||+||++|||++|+.||......... ..+.... .+.+.
T Consensus 225 -~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~---~~i~~~~---------~~~~~ 291 (346)
T 4fih_A 225 -PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAM---KMIRDNL---------PPRLK 291 (346)
T ss_dssp -CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHH---HHHHHSS---------CCCCS
T ss_pred -CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH---HHHHCCC---------CCCCC
T ss_conf -7534656275827999977999996899999999999999787998985999999---9997179---------99887
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 4550899999999998853128789999689999
Q 003489 733 ESGFKMEIIRCVNVGLLCVQEFVKDRPNMPTVVS 766 (816)
Q Consensus 733 ~~~~~~~~~~l~~l~~~Cl~~dP~~RPt~~evl~ 766 (816)
........+.+++.+||+.||++|||+.|+++
T Consensus 292 --~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 292 --NLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 323 (346)
T ss_dssp --CGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred --CCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf --50229999999999986799568909999960
No 9
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=369.75 Aligned_cols=265 Identities=20% Similarity=0.212 Sum_probs=212.6
Q ss_pred HCCCCCCCCCCCCCCEEEEEEEEC-CCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEEE
Q ss_conf 318421121377985529985862-8827999981534730079999999998414998311234698725853599930
Q 003489 494 TNNFQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKASGQGQEEFMNEVMVISNLQHRNLVRLLGCCVEREENMLIYEY 572 (816)
Q Consensus 494 ~~~f~~~~~LG~G~~g~Vy~g~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~e~ 572 (816)
.+.|++.++||+|+||.||+++.. +++.||||+++.... ..+|+.+++.++|||||++++++.+.+..++||||
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 131 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL 131 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred HHHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHHH-----HHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 3351768685138780999999889998999999788886-----99999999857998999399999989999999966
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEECCCC-CCEEECCCCCEECCCCC
Q ss_conf 79999430015989999899667998999999999997725997489942088828973899-94440344302218987
Q 003489 573 MPNKSLDSFLFDPQRQSLLDWPKRFNIIKGISRGLLYLHRDSRLRIIHRDLKASNILLDDDL-NPKISDFGLARIFGGNQ 651 (816)
Q Consensus 573 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~ivH~Dlkp~NILl~~~~-~~kl~Dfgla~~~~~~~ 651 (816)
+++|+|.++|.. ...+++..+..++.||+.||+|||+++ |+||||||+|||++.++ .+||+|||+|+.+....
T Consensus 132 ~~gg~L~~~l~~---~~~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~ 205 (336)
T 4g3f_A 132 LEGGSLGQLIKQ---MGCLPEDRALYYLGQALEGLEYLHTRR---ILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDG 205 (336)
T ss_dssp CTTCBHHHHHHH---HSSCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCCGGGEEECTTSCCEEECCCTTCEEC----
T ss_pred CCCCCHHHHHHH---CCCCCHHHHHHHHHHHHHHHHHHHHCC---CEECCCCHHHEEEECCCCEEEEEECCCCEECCCCC
T ss_conf 599869999987---699999999999999999999999889---04261677887995899979996278776856787
Q ss_pred CC---CCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 63---320233455664481000259999502368798999998839989998831334319899877412687011224
Q 003489 652 DQ---AATKRLVGTYGYMSPEYAMEGRFSEKSDVFSFGVLLLEIVSGRKNTSFYHEEFELTLLGYAWKLWNDNNVIDLVD 728 (816)
Q Consensus 652 ~~---~~~~~~~gt~~y~aPE~~~~~~~s~ksDVwSlGvil~elltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~l~d 728 (816)
.. ......+||+.|||||++.+..++.++||||+||++|||++|+.||......... ..+.. ......+
T Consensus 206 ~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~---~~i~~--~~~~~~~--- 277 (336)
T 4g3f_A 206 LGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLC---LKIAS--EPPPIRE--- 277 (336)
T ss_dssp --------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCH---HHHHH--SCCGGGG---
T ss_pred CCCCEECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH---HHHHC--CCCCCHH---
T ss_conf 654022178545580200899988999890899999999999999786998998999999---99980--8998002---
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCE
Q ss_conf 3112455089999999999885312878999968999997101257998999950
Q 003489 729 PLISESGFKMEIIRCVNVGLLCVQEFVKDRPNMPTVVSMLNSEIKDLPAAKQPAF 783 (816)
Q Consensus 729 ~~l~~~~~~~~~~~l~~l~~~Cl~~dP~~RPt~~evl~~L~~~~~~l~~~~~p~~ 783 (816)
........+.+++.+||+.||++|||+.|+++.|...+.+.....+|=.
T Consensus 278 ------~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~~l~hPw~ 326 (336)
T 4g3f_A 278 ------IPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVGGLKSPWK 326 (336)
T ss_dssp ------SCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTTSSCSCSS
T ss_pred ------CCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf ------5866799999999997628976895999999999999754432169876
No 10
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=1.00 E-value=1 Score=367.48 Aligned_cols=269 Identities=23% Similarity=0.297 Sum_probs=201.7
Q ss_pred CCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECC----CCEEEE
Q ss_conf 1842112137798552998586288279999815347300799999999984149983112346987258----535999
Q 003489 495 NNFQLANKLGQGGFGPVYKGKLQDGQEIAVKRLSKASGQGQEEFMNEVMVISNLQHRNLVRLLGCCVERE----ENMLIY 570 (816)
Q Consensus 495 ~~f~~~~~LG~G~~g~Vy~g~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~g~~~~~~----~~~lV~ 570 (816)
++|.+.++||+|+||.||+|++. |+.||||++.... .....+..|+..+.+++|||||++++++.+.+ ..++||
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~~-g~~VAvK~l~~~~-~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~ 80 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSRE-ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 80 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEET-TEEEEEEEECGGG-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred CEEEEEEEEEECCCEEEEEEEEC-CEEEEEEEECCCC-HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEE
T ss_conf 58999789840899399999999-9899999988313-366999999999860899988709999984688723788775
Q ss_pred EECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-----CCCEEEEEECCCCEEECCCCCCEEECCCCCE
Q ss_conf 30799994300159899998996679989999999999977259-----9748994208882897389994440344302
Q 003489 571 EYMPNKSLDSFLFDPQRQSLLDWPKRFNIIKGISRGLLYLHRDS-----RLRIIHRDLKASNILLDDDLNPKISDFGLAR 645 (816)
Q Consensus 571 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~-----~~~ivH~Dlkp~NILl~~~~~~kl~Dfgla~ 645 (816)
||+++|+|.++|+. ..++|..+++++.|++.||+|||++. .++|+||||||+|||++.++.+||+|||+++
T Consensus 81 Ey~~~gsL~~~l~~----~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~ 156 (303)
T 3hmm_A 81 DYHEHGSLFDYLNR----YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV 156 (303)
T ss_dssp ECCTTCBHHHHHHH----CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCE
T ss_pred CCCCCCCHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEEEECCCCC
T ss_conf 17899968999975----79998999999999999999999852400478987624678420899889978998479874
Q ss_pred ECCCCCCCC--CCCCCCCCCCCCCHHCCCCC------CCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH----HH----H
Q ss_conf 218987633--20233455664481000259------99950236879899999883998999883133----43----1
Q 003489 646 IFGGNQDQA--ATKRLVGTYGYMSPEYAMEG------RFSEKSDVFSFGVLLLEIVSGRKNTSFYHEEF----EL----T 709 (816)
Q Consensus 646 ~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~------~~s~ksDVwSlGvil~elltG~~p~~~~~~~~----~~----~ 709 (816)
......... .....+||+.|||||++... .++.++||||||+++|||+||++|+....... .. .
T Consensus 157 ~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~ 236 (303)
T 3hmm_A 157 RHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDP 236 (303)
T ss_dssp EEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSC
T ss_pred CCCCCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCC
T ss_conf 55677773221046424664626988845654556776570676664799999998789987766522353100254543
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 9899877412687011224311245-508999999999988531287899996899999710125
Q 003489 710 LLGYAWKLWNDNNVIDLVDPLISES-GFKMEIIRCVNVGLLCVQEFVKDRPNMPTVVSMLNSEIK 773 (816)
Q Consensus 710 l~~~~~~~~~~~~~~~l~d~~l~~~-~~~~~~~~l~~l~~~Cl~~dP~~RPt~~evl~~L~~~~~ 773 (816)
...........+ .++|.+... ...+....+.+++.+||+.||++||||.||+++|+++.+
T Consensus 237 ~~~~~~~~~~~~----~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~ 297 (303)
T 3hmm_A 237 SVEEMRKVVCEQ----KLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQ 297 (303)
T ss_dssp CHHHHHHHHTTS----CCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC----CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 099999987502----5799887655665899999999999760597579599999999998898
Done!