BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003490
(816 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D3A|A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides
Thetaiotaomicron
Length = 612
Score = 168 bits (425), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 112/323 (34%), Positives = 155/323 (47%), Gaps = 27/323 (8%)
Query: 32 RKALLINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYN 91
+ L+NG+ ++ + IHYPR + WE I+ K G + I YVFWN HEP G Y+
Sbjct: 12 KNTFLLNGEPFVVKAAEIHYPRIPKEYWEHRIKXCKALGXNTICLYVFWNFHEPEEGRYD 71
Query: 92 FEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRA 151
F G+ D+ F + Q+ G Y +R GPYVCAEW GG P WL I R + +
Sbjct: 72 FAGQKDIAAFCRLAQENGXYVIVRPGPYVCAEWEXGGLPWWLLKKKDIKLREQDPYYXER 131
Query: 152 MQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLGAAGHNYMTWAAKMAVEMG 211
++ F ++ + +L S+GG II Q+ENEYGA Y++ + G
Sbjct: 132 VKLFLNEVGKQLA--DLQISKGGNIIXVQVENEYGA-----FGIDKPYISEIRDXVKQAG 184
Query: 212 -TGVPWVMCK-----EEDAPDPV---INSCNGFYCDA----FTPNQPYKPTIWTEAWSGW 258
TGVP C E +A D + IN G D +P P +E WSGW
Sbjct: 185 FTGVPLFQCDWNSNFENNALDDLLWTINFGTGANIDEQFKRLKELRPDTPLXCSEFWSGW 244
Query: 259 FTEFGGPIHQRPVQDLAFAAARFIQKGGSFINYYMYHGGTNFGRSAGGPF-----ITTSY 313
F +G R ++L + + SF + Y HGGT+FG G F TSY
Sbjct: 245 FDHWGAKHETRSAEELVKGXKEXLDRNISF-SLYXTHGGTSFGHWGGANFPNFSPTCTSY 303
Query: 314 DYDAPIDEYGLIRQPKYGHLKEL 336
DYDAPI+E G + PKY ++ L
Sbjct: 304 DYDAPINESGKV-TPKYLEVRNL 325
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 98/274 (35%), Gaps = 63/274 (22%)
Query: 465 TRDASDYLW----YITSVDIGSSESFLHGGELPTLIVQSTGHALHIFINGQLSGSAFGTR 520
T +A D W Y TS+ E TL++ +F+NG+ +
Sbjct: 374 TXEAFDQGWGSILYRTSLSASDKEQ--------TLLITEAHDWAQVFLNGKKLATL---- 421
Query: 521 EARRFMYTGKVNLRAGR--NKIALLSVAVGLPNVGGHYETWNTGILGPVALHGLDQGKWD 578
R G V L + +++ +L A G N G W GI V L +
Sbjct: 422 --SRLKGEGVVKLPPLKEGDRLDILVEAXGRXNFGKGIYDWK-GITEKVELQSDKGVELV 478
Query: 579 LSWQKWTYQVGLRGEAMNLVSPNGISSVEWMQASLAVQRQQPLMWHKAYFNAPE-GDEPL 637
WQ +T P S Q + ++++ FN E GD
Sbjct: 479 KDWQVYTI-------------PVDYSFARDKQYKQQENAENQPAYYRSTFNLNELGD--T 523
Query: 638 ALDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCNYVGGYRPTKCQLGCGQPTQRWYHVP 697
L+ KG +W+NG ++GRYW ++G P Q Y VP
Sbjct: 524 FLNXXNWSKGXVWVNGHAIGRYW----------------------EIG---PQQTLY-VP 557
Query: 698 RSWLKPTQNFLVVFEELGGNPSRISLVKRSVTSV 731
WLK +N +++ + G + + +++ + V
Sbjct: 558 GCWLKKGENEIIILDXAGPSKAETEGLRQPILDV 591
>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THD|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
Length = 654
Score = 161 bits (407), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 127/410 (30%), Positives = 184/410 (44%), Gaps = 42/410 (10%)
Query: 28 VTYDRKALLINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSP 87
+ Y R + L +GQ SGSIHY R W+D + K K GL+ I+TYV WN HEP P
Sbjct: 11 IDYSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPWP 70
Query: 88 GNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEP 147
G Y F +D+ F++ + GL LR GPY+CAEW GG P WL I R+ +
Sbjct: 71 GQYQFSEDHDVEYFLRLAHELGLLVILRPGPYICAEWEMGGLPAWLLEKESILLRSSDPD 130
Query: 148 FKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLGAAGHNYMTWAAK-M 206
+ A+ + ++ MK L GGP+I Q+ENEYG+ A +Y+ + K
Sbjct: 131 YLAAVDKWLGVLLPKMKP--LLYQNGGPVITVQVENEYGSYF----ACDFDYLRFLQKRF 184
Query: 207 AVEMGTGVPWVMCKEEDAPDPVIN--SCNGFY-----------CDAFTPN---QPYKPTI 250
+G V V+ + A + + G Y DAF +P P I
Sbjct: 185 RHHLGDDV--VLFTTDGAHKTFLKCGALQGLYTTVDFGTGSNITDAFLSQRKCEPKGPLI 242
Query: 251 WTEAWSGWFTEFGGPIHQRPVQDLAFAAARFIQKGGSFINYYMYHGGTNFG--RSAGGPF 308
+E ++GW +G P + +A + + +G S +N YM+ GGTNF A P+
Sbjct: 243 NSEFYTGWLDHWGQPHSTIKTEAVASSLYDILARGAS-VNLYMFIGGTNFAYWNGANSPY 301
Query: 309 IT--TSYDYDAPIDEYGLIRQPKYGHLKELHRAIKMCERALVSADPIVTSLGGFQQAHVY 366
TSYDYDAP+ E G + + KY L+ + I+ E+ V PI S F V
Sbjct: 302 AAQPTSYDYDAPLSEAGDLTE-KYFALRNI---IQKFEK--VPEGPIPPSTPKFAYGKVT 355
Query: 367 SSESGDCAAFLSNYDTKSAARVLFN------NMHYNLPPWSISVLPDCRN 410
+ A L + L+ HY + ++ DC N
Sbjct: 356 LEKLKTVGAALDILCPSGPIKSLYPLTFIQVKQHYGFVLYRTTLPQDCSN 405
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 628 FNAPEGDEPLALD----MEGMGKGQIWINGQSVGRYWTA 662
F+ P G L D G KGQ+WING ++GRYW A
Sbjct: 533 FSIPSGIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPA 571
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8C|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8D|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase
pdb|4E8D|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase
Length = 595
Score = 156 bits (394), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 112/373 (30%), Positives = 172/373 (46%), Gaps = 49/373 (13%)
Query: 32 RKALLINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYN 91
R ++G+ + SG+IHY R P+ W + K G + +ETYV WN+HEP G ++
Sbjct: 7 RDDFYLDGKSFKILSGAIHYFRVPPEDWYHSLYNLKALGFNTVETYVAWNLHEPCEGEFH 66
Query: 92 FEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRA 151
FEG DL +F++ Q GLYA +R P++CAEW FGG P WL + R+ + + A
Sbjct: 67 FEGDLDLEKFLQIAQDLGLYAIVRPSPFICAEWEFGGLPAWL-LTKNMRIRSSDPAYIEA 125
Query: 152 MQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLGAAGHNYMTWAAKMAVEMG 211
+ + ++++ + L GG I++ Q+ENEYG+ + Y+ ++ E G
Sbjct: 126 VGRYYDQLLPRLVPRLL--DNGGNILMMQVENEYGSYGE-----DKAYLRAIRQLMEECG 178
Query: 212 TGVPWVMCKEEDAP------DPVINSCNGFYCDAFTPNQPYK---------------PTI 250
P D P + + F F PY P +
Sbjct: 179 VTCPLFTS---DGPWRATLKAGTLIEEDLFVTGNFGSKAPYNFSQMQEFFDEHGKKWPLM 235
Query: 251 WTEAWSGWFTEFGGPIHQRPVQDLAFAAARFIQKGGSFINYYMYHGGTNFGR----SAGG 306
E W GWF + PI R ++LA A +++G IN YM+HGGTNFG SA G
Sbjct: 236 CMEFWDGWFNRWKEPIITRDPKELADAVREVLEQGS--INLYMFHGGTNFGFMNGCSARG 293
Query: 307 PFI---TTSYDYDAPIDEYG-------LIRQPKYGHLKELHRAIKMCERAL-VSADPIVT 355
TSYDYDA +DE G +++ H E + + + ++ + A P+V
Sbjct: 294 TLDLPQVTSYDYDALLDEEGNPTAKYLAVKKMMATHFSEYPQLEPLYKESMELDAIPLVE 353
Query: 356 SLGGFQQAHVYSS 368
+ F+ SS
Sbjct: 354 KVSLFETLDSLSS 366
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 71/293 (24%), Positives = 113/293 (38%), Gaps = 69/293 (23%)
Query: 439 SYFEDISSLDDSSTFTTQGLLEQINVTRDASDYLWYITSVDIGSSESFLHGGELPTLIVQ 498
S FE + SL +E++ + YL Y T + + E L I+
Sbjct: 356 SLFETLDSLSSPVESLYPQKMEELG---QSYGYLLYRTETNWDAEEERLR-------IID 405
Query: 499 STGHALHIFINGQLSGSAFGTREARRFMYTGKVNLRAGRNKIALLSVAVGLPNVGGHY-- 556
A ++++GQ + + T Y GK + G +++ +L +G N G +
Sbjct: 406 GRDRA-QLYVDGQWVKTQYQTEIGEDIFYQGK---KKGLSRLDILIENMGRVNYGHKFLA 461
Query: 557 ETWNTGILGPVA--LHGLDQGKWDLSWQKWTYQVGLRGEAMNLVSPNGIS-SVEWMQASL 613
+T GI V LH L L+W+ + + L +P I S W Q
Sbjct: 462 DTQRKGIRTGVCKDLHFL------LNWKHY---------PLPLDNPEKIDFSKGWTQG-- 504
Query: 614 AVQRQQPLMWHKAYFNAPEGDEPLALDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCNY 673
QP + AY E + LD+ GKG ++NGQ++GR+W
Sbjct: 505 -----QPAFY--AYDFTVEEPKDTYLDLSEFGKGVAFVNGQNLGRFWN------------ 545
Query: 674 VGGYRPTKCQLGCGQPTQRWYHVPRSWLKPTQNFLVVFEELGGNPSRISLVKR 726
VG PT Y +P S+LK N +++FE G I L ++
Sbjct: 546 VG-------------PTLSLY-IPHSYLKEGANRIIIFETEGQYKEEIHLTRK 584
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp.
pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp. In Complex With Galactose
Length = 971
Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 134/468 (28%), Positives = 202/468 (43%), Gaps = 68/468 (14%)
Query: 28 VTYDRKALLINGQRRILFSGSIH-YPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPS 86
VT+D ++ +NG+R ++FSG +H Y ++ D+ +K K G + + YV W + E +
Sbjct: 6 VTWDEHSIFVNGERLMIFSGEVHPYRLPVASLYIDIFEKVKALGFNCVSFYVDWALLEGN 65
Query: 87 PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNE 146
PG+Y+ EG +DL F ++AG+Y R GPY+ AE + GGFP WL+ V GI RT +E
Sbjct: 66 PGHYSAEGIFDLQPFFDAAKEAGIYLLARPGPYINAEVSGGGFPGWLQRVDGI-LRTSDE 124
Query: 147 PFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEY-GAQSKLLGAAGHNYMTWAAK 205
+ +A + I + + + GGPIIL Q ENEY GA G +YM +
Sbjct: 125 AYLKATDNYASNIAATIAKAQI--TNGGPIILYQPENEYSGACCGYNGFPDGSYMQYIED 182
Query: 206 MAVEMGTGVPWVM----CKEEDAPDPVINSCN---------GFYC--------------- 237
A + G VP++ +AP + + GF C
Sbjct: 183 HARDAGIVVPFISNDAWAAGHNAPGTGAGAVDIYGHDSYPLGFDCANPSTWPSGNLPTYF 242
Query: 238 -DAFTPNQPYKPTIWTEAWSGWFTEFGGPIHQRPVQDLAFAAARFIQK-----GGSFINY 291
+ P P E G F +GG + L R K G +F+N
Sbjct: 243 HTSHEQQSPSTPYSLVEFQGGAFDPWGGVGFAKCAALLNHEFERVFYKNDFSFGVAFLNL 302
Query: 292 YMYHGGTNFGRSAGGPFITTSYDYDAPIDEYGLIRQPKYGHLKELHRAIKMCERALV--- 348
YM GGTN+G + G P TSYDY + I E I + KY LK L K+ LV
Sbjct: 303 YMIFGGTNWG-NLGHPGGYTSYDYGSAISESRNITREKYSELKLLGNFAKVSPGYLVANP 361
Query: 349 ----------SADPIVTSLGGFQQAHVYSSESGDCAAFLSNYDTKSAARVLF------NN 392
+AD VT L G S+ S + + D S A V + +
Sbjct: 362 GDLSTSTYTNTADLTVTPLLG-------SNSSASSFFVIRHSDYSSQASVEYKLTVPTSA 414
Query: 393 MHYNLPPWSISVLPDCRNVVFNTAKVGVQTSQMEMLPANAEMFSWESY 440
+ +P S+ R+ + V + +L + AE+F+W+ +
Sbjct: 415 GNLTIPQLGGSLTLSGRDSKIHVTDYDV--AGTNILYSTAEVFTWKKF 460
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 128/461 (27%), Positives = 197/461 (42%), Gaps = 53/461 (11%)
Query: 28 VTYDRKALLINGQRRILFSGSIH-YPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPS 86
VT+D +L ++G+R ++FSG +H + P ++ D+ K K G + + YV W + E
Sbjct: 26 VTWDEHSLFVHGERVVIFSGEVHPFRLPVPSLYLDVFHKIKALGFNTVSFYVDWALLEGK 85
Query: 87 PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNE 146
PG + +G + L F + KAG+Y R GPY+ AE + GGFP WL+ V G RTD
Sbjct: 86 PGRFRADGIFSLEPFFEAATKAGIYLLARPGPYINAEVSGGGFPGWLQRVKG-KLRTDAP 144
Query: 147 PFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLGAAGHNYMTWAAKM 206
+ A + I +++ + + GGP+IL Q ENEY ++ + YM +
Sbjct: 145 DYLHATDNYVAHIASIIAKAQI--TNGGPVILYQPENEYSGAAEGVLFPNKPYMQYVIDQ 202
Query: 207 AVEMGTGVPWV----MCKEEDAPDPVINSCN---------GFYC-------DAFTPN--- 243
A G VP + AP + S + GF C D P
Sbjct: 203 ARNAGIIVPLINNDAFPGGTGAPGTGLGSVDIYGHDGYPLGFDCAHPSAWPDNGLPTTWR 262
Query: 244 ------QPYKPTIWTEAWSGWFTEFGGPIHQRPVQDLAFAAARFIQK-----GGSFINYY 292
P P E G F FGG ++ + R K G + N Y
Sbjct: 263 QDHLNISPSTPFSLVEFQGGAFDPFGGWGFEQCSALVNHEFERVFYKNNMAAGVTIFNIY 322
Query: 293 MYHGGTNFGRSAGGPFITTSYDYDAPIDEYGLIRQPKYGHLKELHRAIKMCERALVSADP 352
M GGTN+G + G P TSYDY A I E I + KY LK + +K+ ++A P
Sbjct: 323 MTFGGTNWG-NLGHPGGYTSYDYGASIREDRRIDREKYSELKLQGQFLKVSP-GYITATP 380
Query: 353 IVTSLGGFQQAH------VYSSESGDC----AAFLSNYDTKS-AARVLFNNMHYNLPPWS 401
+ G + + + + ESGD A S+ DT S ++ + +P
Sbjct: 381 ENATQGVYSDSQNIVITPLLAKESGDFFVVRHANYSSTDTASYTVKLPTSAGDLTIPQLG 440
Query: 402 ISVLPDCRNVVFNTAKVGVQTSQMEMLPANAEMFSWESYFE 442
S+ R+ + V + +L + AE+F+W + E
Sbjct: 441 GSLTLTGRDSKIHVTDYPV--GKFTLLYSTAEIFTWNEFAE 479
>pdb|3NYD|A Chain A, Crystal Structure Of Kemp Eliminase Hg-2 Complexed With
Transition State Analog 5-Nitro Benzotriazole
pdb|3NYD|B Chain B, Crystal Structure Of Kemp Eliminase Hg-2 Complexed With
Transition State Analog 5-Nitro Benzotriazole
Length = 316
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 69/179 (38%), Gaps = 34/179 (18%)
Query: 36 LINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGR 95
LI + ++ F + R T +IQ D G+ E + W+ EPS GN+NF G
Sbjct: 9 LIKARGKVYFGVATDQNRLTTGKNAAIIQA--DFGMVWPENSMKWDATEPSQGNFNFAGA 66
Query: 96 YDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPG-ISFRTDNEPFKRAMQG 154
LV + + K IG GG VW +P +S TD M+
Sbjct: 67 DYLVNWAQQNGKL-------IG---------GGMLVWHSQLPSWVSSITDKNTLTNVMKN 110
Query: 155 FTEKIVNLMKSENLFESQGGPI----ILSQIENEYGA--QSKLLGAAGHNYMTWAAKMA 207
++ K G I ++ + NE G+ Q+ L G +Y+ A + A
Sbjct: 111 HITTLMTRYK---------GKIRAWDVVGEAFNEDGSLRQTVFLNVIGEDYIPIAFQTA 160
>pdb|1R6Z|P Chain P, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
pdb|1R6Z|A Chain A, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
pdb|1R6Z|Z Chain Z, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
Length = 509
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 260 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 319
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 320 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 353
>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 805
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 263 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 322
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 323 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 356
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 260 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 319
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGC 671
ME KG+I N + +W A N
Sbjct: 320 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAA 352
>pdb|3F5F|A Chain A, Crystal Structure Of Heparan Sulfate 2-O-Sulfotransferase
From Gallus Gallus As A Maltose Binding Protein Fusion
Length = 658
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 259 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 318
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 319 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 352
>pdb|1HSJ|A Chain A, Sarr Mbp Fusion Structure
pdb|1HSJ|B Chain B, Sarr Mbp Fusion Structure
Length = 487
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 259 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 318
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 319 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 352
>pdb|3H4Z|A Chain A, Crystal Structure Of An Mbp-Der P 7 Fusion Protein
pdb|3H4Z|B Chain B, Crystal Structure Of An Mbp-Der P 7 Fusion Protein
pdb|3H4Z|C Chain C, Crystal Structure Of An Mbp-Der P 7 Fusion Protein
Length = 568
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 259 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 318
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 319 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 352
>pdb|3D4C|A Chain A, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
I)
pdb|3D4G|A Chain A, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Ii)
pdb|3D4G|B Chain B, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Ii)
pdb|3D4G|C Chain C, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Ii)
pdb|3D4G|D Chain D, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Ii)
pdb|3D4G|E Chain E, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Ii)
pdb|3D4G|F Chain F, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Ii)
pdb|3D4G|G Chain G, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Ii)
pdb|3D4G|H Chain H, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Ii)
pdb|3EF7|A Chain A, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Iii)
pdb|3EF7|B Chain B, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Iii)
Length = 481
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 260 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 319
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 320 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 353
>pdb|3VD8|A Chain A, Crystal Structure Of Human Aim2 Pyd Domain With Mbp Fusion
Length = 489
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 260 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 319
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 320 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 353
>pdb|4EXK|A Chain A, A Chimera Protein Containing Mbp Fused To The C-Terminal
Domain Of The Uncharacterized Protein Stm14_2015 From
Salmonella Enterica
Length = 487
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 263 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 322
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 323 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 356
>pdb|3PY7|A Chain A, Crystal Structure Of Full-length Bovine Papillomavirus
Oncoprotein E6 In Complex With Ld1 Motif Of Paxillin At
2.3a Resolution
Length = 523
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 260 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 319
Query: 639 LDMEGMGKGQIWINGQSVGRYWTA 662
ME KG+I N + +W A
Sbjct: 320 ATMENAQKGEIMPNIPQMSAFWYA 343
>pdb|3MP1|A Chain A, Complex Structure Of Sgf29 And Trimethylated H3k4
pdb|3MP6|A Chain A, Complex Structure Of Sgf29 And Dimethylated H3k4
pdb|3MP8|A Chain A, Crystal Structure Of Sgf29 Tudor Domain
Length = 522
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 260 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 319
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 320 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 353
>pdb|3CSG|A Chain A, Crystal Structure Of Monobody Ys1(Mbp-74)MALTOSE BINDING
Protein Fusion Complex
Length = 461
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 257 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 316
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 317 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 350
>pdb|1TUX|A Chain A, High Resolution Crystal Structure Of A Thermostable
Xylanase From Thermoascus Aurantiacus
Length = 301
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 36 LINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGR 95
LI+ + ++ F + R T +IQ D G E + W+ EPS GN+NF G
Sbjct: 9 LIDARGKVYFGVATDQNRLTTGKNAAIIQA--DFGQVTPENSMKWDATEPSQGNFNFAGA 66
Query: 96 YDLVRF 101
LV +
Sbjct: 67 DYLVNW 72
>pdb|3HPI|A Chain A, Crystal Structure Of Maltose-Binding Protein Mutant With
Bound Sucrose
pdb|3HPI|B Chain B, Crystal Structure Of Maltose-Binding Protein Mutant With
Bound Sucrose
pdb|3KJT|A Chain A, Stimulation Of The Maltose Transporter By A Mutant Sucrose
B Protein Gives Insights Into Abc Transporter Coupling
Length = 372
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 261 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 320
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 321 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 354
>pdb|3CSB|A Chain A, Crystal Structure Of Monobody Ysx1MALTOSE BINDING PROTEIN
Fusion Complex
Length = 465
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 257 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 316
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 317 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 350
>pdb|2OBG|A Chain A, Crystal Structure Of Monobody Mbp-74MALTOSE BINDING
PROTEIN FUSION Complex
Length = 461
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 257 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 316
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 317 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 350
>pdb|3IOR|A Chain A, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C95
pdb|3IOR|B Chain B, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C95
pdb|3IOR|C Chain C, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C95
pdb|3IOT|A Chain A, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C92-B
pdb|3IOT|B Chain B, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C92-B
pdb|3IOT|C Chain C, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C92-B
pdb|3IOU|A Chain A, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C94
pdb|3IOU|B Chain B, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C94
pdb|3IOU|C Chain C, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C94
pdb|3IOV|A Chain A, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C99
pdb|3IOV|B Chain B, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C99
pdb|3IOV|C Chain C, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C99
pdb|3IOW|A Chain A, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C99-Hg
pdb|3IOW|B Chain B, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C99-Hg
pdb|3IOW|C Chain C, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C99-Hg
pdb|3IO4|A Chain A, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C90
pdb|3IO4|B Chain B, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C90
pdb|3IO4|C Chain C, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C90
pdb|3IO6|A Chain A, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C92-A
pdb|3IO6|C Chain C, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C92-A
pdb|3IO6|B Chain B, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C92-A
Length = 449
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 259 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 318
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 319 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 352
>pdb|2VGQ|A Chain A, Crystal Structure Of Human Ips-1 Card
Length = 477
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 274 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 333
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 334 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 367
>pdb|3PUY|E Chain E, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUV|E Chain E, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|E Chain E, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|E Chain E, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
Length = 378
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 259 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 318
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 319 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 352
>pdb|2XZ3|A Chain A, Blv Tm Hairpin
Length = 463
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 260 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 319
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 320 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 353
>pdb|1MPB|A Chain A, Maltodextrin-Binding Protein (Maltose-Binding Protein)
Mutant, With Arginine Replacing Tryptophan At Position
230 (Trp-230-Arg)
pdb|1MPC|A Chain A, Maltodextrin-binding Protein (maltose-binding Protein)
Mutant, With Arginine Replacing Tryptophan At Position
230 (trp-230-arg)
pdb|1MPD|A Chain A, Maltodextrin-Binding Protein (Maltose-Binding Protein)
Mutant, With Arginine Replacing Tryptophan At Position
230 (Trp-230-Arg), Complexed With Maltose
Length = 370
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 259 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 318
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 319 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 352
>pdb|1MH3|A Chain A, Maltose Binding-A1 Homeodomain Protein Chimera, Crystal
Form I
pdb|1MH4|A Chain A, Maltose Binding-A1 Homeodomain Protein Chimera, Crystal
Form Ii
Length = 421
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 259 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 318
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 319 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 352
>pdb|3G7W|A Chain A, Islet Amyloid Polypeptide (Iapp Or Amylin) Residues 1 To
22 Fused To Maltose Binding Protein
Length = 393
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 260 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 319
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 320 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 353
>pdb|2ZXT|A Chain A, Crystal Structure Of Tim40MIA40, A DISULFIDE RELAY SYSTEM
IN Mitochondria, Solved As Mbp Fusion Protein
Length = 465
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 259 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 318
Query: 639 LDMEGMGKGQIWINGQSVGRYWTA 662
ME KG+I N + +W A
Sbjct: 319 ATMENAQKGEIMPNIPQMSAFWYA 342
>pdb|1N3W|A Chain A, Engineered High-affinity Maltose-binding Protein
pdb|1N3X|A Chain A, Ligand-Free High-Affinity Maltose-Binding Protein
Length = 366
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 255 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 314
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 315 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 348
>pdb|1LAX|A Chain A, Crystal Structure Of Male31, A Defective Folding Mutant Of
Maltose-Binding Protein
pdb|1LAX|C Chain C, Crystal Structure Of Male31, A Defective Folding Mutant Of
Maltose-Binding Protein
Length = 370
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 259 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 318
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 319 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 352
>pdb|3G7V|A Chain A, Islet Amyloid Polypeptide (Iapp Or Amylin) Fused To
Maltose Binding Protein
pdb|3G7V|B Chain B, Islet Amyloid Polypeptide (Iapp Or Amylin) Fused To
Maltose Binding Protein
pdb|3G7V|C Chain C, Islet Amyloid Polypeptide (Iapp Or Amylin) Fused To
Maltose Binding Protein
pdb|3G7V|D Chain D, Islet Amyloid Polypeptide (Iapp Or Amylin) Fused To
Maltose Binding Protein
Length = 408
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 260 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 319
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 320 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 353
>pdb|4EGC|A Chain A, Crystal Structure Of Mbp-fused Human Six1 Bound To Human
Eya2 Eya Domain
Length = 559
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 259 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 318
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 319 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 352
>pdb|3H34|A Chain A, Ppce, A Cytochrome C7 From Geobacter Sulfurreducens
Length = 70
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 663 YAKGDCNGCNYVGGYRPTKCQL 684
YA C GC+ V G PTKC+L
Sbjct: 45 YAHKTCKGCHEVRGAGPTKCKL 66
>pdb|1EZP|A Chain A, Global Fold Of Maltodextrin Binding Protein Complexed With
Beta-Cyclodextrin Using Peptide Orientations From
Dipolar Couplings
pdb|1EZO|A Chain A, Global Fold Of Maltodextrin Binding Protein Complexed With
Beta-Cyclodextrin
pdb|2H25|A Chain A, Solution Structure Of Maltose Binding Protein Complexed
With Beta-Cyclodextrin
pdb|2KLF|A Chain A, Pere Nmr Structure Of Maltodextrin-Binding Protein
Length = 370
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 259 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 318
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 319 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 352
>pdb|3OAI|A Chain A, Crystal Structure Of The Extra-Cellular Domain Of Human
Myelin Protein Zero
pdb|3OAI|B Chain B, Crystal Structure Of The Extra-Cellular Domain Of Human
Myelin Protein Zero
Length = 507
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 259 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 318
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 319 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 352
>pdb|2OK2|A Chain A, Muts C-Terminal Domain Fused To Maltose Binding Protein
pdb|2OK2|B Chain B, Muts C-Terminal Domain Fused To Maltose Binding Protein
Length = 402
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 259 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 318
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 319 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 352
>pdb|3SES|A Chain A, Cu-Mediated Dimer Of Maltose-Binding Protein A216hK220H BY
SYNTHETIC Symmetrization
pdb|3SES|C Chain C, Cu-Mediated Dimer Of Maltose-Binding Protein A216hK220H BY
SYNTHETIC Symmetrization
pdb|3SET|A Chain A, Ni-Mediated Dimer Of Maltose-Binding Protein A216hK220H BY
SYNTHETIC Symmetrization (Form I)
pdb|3SET|C Chain C, Ni-Mediated Dimer Of Maltose-Binding Protein A216hK220H BY
SYNTHETIC Symmetrization (Form I)
pdb|3SEU|A Chain A, Zn-Mediated Polymer Of Maltose-Binding Protein A216hK220H
BY Synthetic Symmetrization (Form Iii)
pdb|3SEW|A Chain A, Zn-Mediated Polymer Of Maltose-Binding Protein A216hK220H
BY Synthetic Symmetrization (Form I)
pdb|3SEX|A Chain A, Ni-Mediated Dimer Of Maltose-Binding Protein A216hK220H BY
SYNTHETIC Symmetrization (Form Ii)
pdb|3SEX|C Chain C, Ni-Mediated Dimer Of Maltose-Binding Protein A216hK220H BY
SYNTHETIC Symmetrization (Form Ii)
pdb|3SEY|A Chain A, Zn-Mediated Polymer Of Maltose-Binding Protein A216hK220H
BY Synthetic Symmetrization (Form Ii)
pdb|3SEY|C Chain C, Zn-Mediated Polymer Of Maltose-Binding Protein A216hK220H
BY Synthetic Symmetrization (Form Ii)
pdb|3SEY|E Chain E, Zn-Mediated Polymer Of Maltose-Binding Protein A216hK220H
BY Synthetic Symmetrization (Form Ii)
Length = 372
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 260 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 319
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 320 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 353
>pdb|3RLF|E Chain E, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 380
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 259 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 318
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 319 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 352
>pdb|3LBS|A Chain A, Crystal Structure Of The Cytoplasmic Tail Of (Pro)renin
Receptor As A Mbp Fusion (Maltose-Bound Form)
pdb|3LBS|B Chain B, Crystal Structure Of The Cytoplasmic Tail Of (Pro)renin
Receptor As A Mbp Fusion (Maltose-Bound Form)
pdb|3LC8|A Chain A, Crystal Structure Of The Cytoplasmic Tail Of (Pro)renin
Receptor As A Mbp Fusion (Maltose-Free Form)
pdb|3LC8|B Chain B, Crystal Structure Of The Cytoplasmic Tail Of (Pro)renin
Receptor As A Mbp Fusion (Maltose-Free Form)
Length = 384
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 259 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 318
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 319 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 352
>pdb|1MDP|1 Chain 1, Refined Structures Of Two Insertion(Slash)deletion Mutants
Probe Function Of The Maltodextrin Binding Protein
pdb|1MDP|2 Chain 2, Refined Structures Of Two Insertion(Slash)deletion Mutants
Probe Function Of The Maltodextrin Binding Protein
Length = 363
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 252 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 311
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 312 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 345
>pdb|2V93|A Chain A, Equillibrium Mixture Of Open And Partially-Closed Species
In The Apo State Of Maltodextrin-Binding Protein By
Paramagnetic Relaxation Enhancement Nmr
Length = 370
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 259 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 318
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 319 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 352
>pdb|1K6A|A Chain A, Structural Studies On The Mobility In The Active Site Of
The Thermoascus Aurantiacus Xylanase I
Length = 303
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 36 LINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGR 95
LI + ++ F + R T +IQ D G E + W+ EPS GN+NF G
Sbjct: 9 LIKARGKVYFGVATDQNRLTTGKNAAIIQA--DFGQVTPENSMKWDATEPSQGNFNFAGA 66
Query: 96 YDLVRFIK 103
LV + +
Sbjct: 67 DYLVNWAQ 74
>pdb|1IUD|A Chain A, Maltodextrin-Binding Protein InsertionDELETION MUTANT WITH
An Inserted B-Cell Epitope From The Pres2 Region Of
Hepatitis B Virus
Length = 380
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 269 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 328
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 329 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 362
>pdb|1GOK|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus-
Crystal Form Ii
pdb|1GOO|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus -
Cryocooled Glycerol Complex
pdb|1GOM|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus -
Crystal Form I
pdb|1GOR|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus-
Xylobiose Complex At 100 K
pdb|1GOQ|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus-Room
Temperature Xylobiose Complex
Length = 303
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 36 LINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGR 95
LI + ++ F + R T +IQ D G E + W+ EPS GN+NF G
Sbjct: 9 LIKARGKVYFGVATDQNRLTTGKNAAIIQA--DFGQVTPENSMKWDATEPSQGNFNFAGA 66
Query: 96 YDLVRFIK 103
LV + +
Sbjct: 67 DYLVNWAQ 74
>pdb|3SER|A Chain A, Zn-Mediated Polymer Of Maltose-Binding Protein K26hK30H BY
SYNTHETIC Symmetrization
pdb|3SER|C Chain C, Zn-Mediated Polymer Of Maltose-Binding Protein K26hK30H BY
SYNTHETIC Symmetrization
Length = 372
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 260 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 319
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 320 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 353
>pdb|1EZ9|A Chain A, Structure Of Maltotetraitol Bound To Open-Form
Maltodextrin Binding Protein In P1 Crystal Form
pdb|1EZ9|B Chain B, Structure Of Maltotetraitol Bound To Open-Form
Maltodextrin Binding Protein In P1 Crystal Form
pdb|1JW4|A Chain A, Structure Of Ligand-Free Maltodextrin-Binding Protein
pdb|1JW5|A Chain A, Structure Of Maltose Bound To Open-Form Maltodextrin-
Binding Protein In P1 Crystal
pdb|1LLS|A Chain A, Crystal Structure Of Unliganded Maltose Binding Protein
With Xenon
pdb|2D21|A Chain A, Nmr Structure Of Stereo-Array Isotope Labelled (Sail)
Maltodextrin-Binding Protein (Mbp)
pdb|1ANF|A Chain A, Maltodextrin Binding Protein With Bound Maltose
pdb|1DMB|A Chain A, Refined 1.8 Angstroms Structure Reveals The Mechanism Of
Binding Of A Cyclic Sugar, Beta-Cyclodextrin, To The
Maltodextrin Binding Protein
pdb|1OMP|A Chain A, Crystallographic Evidence Of A Large Ligand-Induced Hinge-
Twist Motion Between The Two Domains Of The
Maltodextrin- Binding Protein Involved In Active
Transport And Chemotaxis
pdb|3MBP|A Chain A, Maltodextrin-Binding Protein With Bound Maltotriose
pdb|4MBP|A Chain A, Maltodextrin Binding Protein With Bound Maltetrose
pdb|2R6G|E Chain E, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 370
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 259 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 318
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 319 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 352
>pdb|3Q27|A Chain A, Cyrstal Structure Of Human Alpha-Synuclein (32-57) Fused
To Maltose Binding Protein (Mbp)
Length = 397
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 260 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 319
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 320 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 353
>pdb|1YTV|A Chain A, Maltose-binding Protein Fusion To A C-terminal Fragment Of
The V1a Vasopressin Receptor
pdb|1YTV|B Chain B, Maltose-binding Protein Fusion To A C-terminal Fragment Of
The V1a Vasopressin Receptor
Length = 366
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 259 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 318
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 319 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 352
>pdb|3MQ9|A Chain A, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|B Chain B, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|C Chain C, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|D Chain D, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|E Chain E, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|F Chain F, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|G Chain G, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|H Chain H, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
Length = 471
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 273 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 332
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 333 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 366
>pdb|1MG1|A Chain A, Htlv-1 Gp21 EctodomainMALTOSE-Binding Protein Chimera
Length = 450
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 255 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 314
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 315 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 348
>pdb|1FQA|A Chain A, Structure Of Maltotetraitol Bound To Open-Form
Maltodextrin Binding Protein In P2(1)crystal Form
pdb|1FQB|A Chain A, Structure Of Maltotriotol Bound To Open-Form Maltodextrin
Binding Protein In P2(1)crystal Form
pdb|1FQC|A Chain A, Crystal Structure Of Maltotriotol Bound To Closed-Form
Maltodextrin Binding Protein
pdb|1FQD|A Chain A, Crystal Structure Of Maltotetraitol Bound To Closed-Form
Maltodextrin Binding Protein
Length = 370
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 259 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 318
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 319 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 352
>pdb|3A3C|A Chain A, Crystal Structure Of Tim40MIA40 FUSING MBP, C296S AND
C298S Mutant
Length = 451
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 257 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 316
Query: 639 LDMEGMGKGQIWINGQSVGRYWTA 662
ME KG+I N + +W A
Sbjct: 317 ATMENAQKGEIMPNIPQMSAFWYA 340
>pdb|4GLI|A Chain A, Crystal Structure Of Human Smn Yg-Dimer
Length = 401
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 259 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 318
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 319 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 352
>pdb|3EHS|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Corticotropin Releasing Factor Receptor Type 1 (Crfr1)
Length = 476
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 261 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 320
Query: 639 LDMEGMGKGQIWINGQSVGRYWTA 662
ME KG+I N + +W A
Sbjct: 321 ATMENAQKGEIMPNIPQMSAFWYA 344
>pdb|3N93|A Chain A, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 3
pdb|3N93|B Chain B, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 3
pdb|3N95|A Chain A, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N95|B Chain B, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N95|C Chain C, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N95|D Chain D, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N96|A Chain A, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
pdb|3N96|B Chain B, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
pdb|3N96|C Chain C, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
pdb|3N96|D Chain D, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
Length = 482
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 261 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 320
Query: 639 LDMEGMGKGQIWINGQSVGRYWTA 662
ME KG+I N + +W A
Sbjct: 321 ATMENAQKGEIMPNIPQMSAFWYA 344
>pdb|4GIZ|A Chain A, Crystal Structure Of Full-length Human Papillomavirus
Oncoprotein E6 In Complex With Lxxll Peptide Of
Ubiquitin Ligase E6ap At 2.55 A Resolution
pdb|4GIZ|B Chain B, Crystal Structure Of Full-length Human Papillomavirus
Oncoprotein E6 In Complex With Lxxll Peptide Of
Ubiquitin Ligase E6ap At 2.55 A Resolution
Length = 382
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 259 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 318
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 319 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 352
>pdb|3Q28|A Chain A, Cyrstal Structure Of Human Alpha-Synuclein (58-79) Fused
To Maltose Binding Protein (Mbp)
Length = 393
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 260 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 319
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 320 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 353
>pdb|3EHT|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Corticotropin Releasing Factor Receptor Type 1 (crfr1)
In Complex With Crf
Length = 476
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 261 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 320
Query: 639 LDMEGMGKGQIWINGQSVGRYWTA 662
ME KG+I N + +W A
Sbjct: 321 ATMENAQKGEIMPNIPQMSAFWYA 344
>pdb|1JVY|A Chain A, Maltodextrin-Binding Protein Variant D207cA301GSP316C With
Beta-Mercaptoethanol Mixed Disulfides
Length = 372
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL---MWHKAYFNAPEGDEPL 637
VG+ +N SPN + E+++ L AV + +PL + K+Y D +
Sbjct: 260 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGGSVALKSYEEELAKDXRI 319
Query: 638 ALDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
A ME KG+I N + +W A N +
Sbjct: 320 AATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 354
>pdb|3N94|A Chain A, Crystal Structure Of Human Pituitary Adenylate Cyclase 1
Receptor- Short N-Terminal Extracellular Domain
Length = 475
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 261 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 320
Query: 639 LDMEGMGKGQIWINGQSVGRYWTA 662
ME KG+I N + +W A
Sbjct: 321 ATMENAQKGEIMPNIPQMSAFWYA 344
>pdb|3PGF|A Chain A, Crystal Structure Of Maltose Bound Mbp With A
Conformationally Specific Synthetic Antigen Binder (Sab)
Length = 398
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 290 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 349
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 350 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 383
>pdb|3Q25|A Chain A, Crystal Structure Of Human Alpha-Synuclein (1-19) Fused To
Maltose Binding Protein (Mbp)
pdb|3Q29|A Chain A, Cyrstal Structure Of Human Alpha-Synuclein (1-19) Fused To
Maltose Binding Protein (Mbp)
pdb|3Q29|C Chain C, Cyrstal Structure Of Human Alpha-Synuclein (1-19) Fused To
Maltose Binding Protein (Mbp)
Length = 390
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 260 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 319
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 320 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 353
>pdb|3L2J|A Chain A, Dimeric Structure Of The Ligand-Free Extracellular Domain
Of Parathyroid Hormone Receptor (Pth1r)
pdb|3L2J|B Chain B, Dimeric Structure Of The Ligand-Free Extracellular Domain
Of Parathyroid Hormone Receptor (Pth1r)
Length = 535
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 257 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 316
Query: 639 LDMEGMGKGQIWINGQSVGRYWTA 662
ME KG+I N + +W A
Sbjct: 317 ATMENAQKGEIMPNIPQMSAFWYA 340
>pdb|1NMU|A Chain A, Mbp-L30
pdb|1NMU|C Chain C, Mbp-L30
Length = 382
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 260 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 319
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 320 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 353
>pdb|1T0K|A Chain A, Joint X-ray And Nmr Refinement Of Yeast L30e-mrna Complex
Length = 381
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 260 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 319
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 320 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 353
>pdb|3SEV|A Chain A, Zn-Mediated Trimer Of Maltose-Binding Protein E310hK314H
BY SYNTHETIC Symmetrization
pdb|3SEV|C Chain C, Zn-Mediated Trimer Of Maltose-Binding Protein E310hK314H
BY SYNTHETIC Symmetrization
pdb|3SEV|E Chain E, Zn-Mediated Trimer Of Maltose-Binding Protein E310hK314H
BY SYNTHETIC Symmetrization
Length = 372
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y + D +A
Sbjct: 260 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEHELAHDPRIA 319
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 320 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 353
>pdb|3HST|A Chain A, N-Terminal Rnase H Domain Of Rv2228c From Mycobacterium
Tuberculosis As A Fusion Protein With Maltose Binding
Protein
pdb|3HST|C Chain C, N-Terminal Rnase H Domain Of Rv2228c From Mycobacterium
Tuberculosis As A Fusion Protein With Maltose Binding
Protein
Length = 387
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 260 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 319
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 320 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 353
>pdb|1A7L|A Chain A, Dominant B-Cell Epitope From The Pres2 Region Of Hepatitis
B Virus In The Form Of An Inserted Peptide Segment In
Maltodextrin-Binding Protein
pdb|1A7L|B Chain B, Dominant B-Cell Epitope From The Pres2 Region Of Hepatitis
B Virus In The Form Of An Inserted Peptide Segment In
Maltodextrin-Binding Protein
pdb|1A7L|C Chain C, Dominant B-Cell Epitope From The Pres2 Region Of Hepatitis
B Virus In The Form Of An Inserted Peptide Segment In
Maltodextrin-Binding Protein
Length = 389
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 259 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 318
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 319 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 352
>pdb|3RUM|A Chain A, New Strategy To Analyze Structures Of Glycopeptide
Antibiotic-Target Complexes
pdb|3VFJ|A Chain A, The Structure Of Monodechloro-Teicoplanin In Complex With
Its Ligand, Using Mbp As A Ligand Carrier
Length = 378
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 260 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 319
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 320 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 353
>pdb|3C4M|A Chain A, Structure Of Human Parathyroid Hormone In Complex With The
Extracellular Domain Of Its G-Protein-Coupled Receptor
(Pth1r)
pdb|3C4M|B Chain B, Structure Of Human Parathyroid Hormone In Complex With The
Extracellular Domain Of Its G-Protein-Coupled Receptor
(Pth1r)
pdb|3H3G|A Chain A, Crystal Structure Of The Extracellular Domain Of The Human
Parathyroid Hormone Receptor (Pth1r) In Complex With
Parathyroid Hormone-Related Protein (Pthrp)
Length = 539
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 261 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 320
Query: 639 LDMEGMGKGQIWINGQSVGRYWTA 662
ME KG+I N + +W A
Sbjct: 321 ATMENAQKGEIMPNIPQMSAFWYA 344
>pdb|1SVX|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 395
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 274 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 333
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 334 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 367
>pdb|3O3U|N Chain N, Crystal Structure Of Human Receptor For Advanced Glycation
Endproducts (Rage)
Length = 581
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 259 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 318
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 319 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 352
>pdb|3Q26|A Chain A, Cyrstal Structure Of Human Alpha-Synuclein (10-42) Fused
To Maltose Binding Protein (Mbp)
Length = 404
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 260 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 319
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 320 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 353
>pdb|3OB4|A Chain A, Mbp-Fusion Protein Of The Major Peanut Allergen Ara H 2
Length = 500
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 259 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 318
Query: 639 LDMEGMGKGQIWINGQSVGRYWTA 662
ME KG+I N + +W A
Sbjct: 319 ATMENAQKGEIMPNIPQMSAFWYA 342
>pdb|1MDQ|A Chain A, Refined Structures Of Two Insertion(slash)deletion Mutants
Probe Function Of The Maltodextrin Binding Protein
Length = 371
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL---MWHKAYFNAPEGDEPL 637
VG+ +N SPN + E+++ L AV + +PL + K+Y D +
Sbjct: 259 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGGSVALKSYEEELAKDPRI 318
Query: 638 ALDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
A ME KG+I N + +W A N +
Sbjct: 319 AATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 353
>pdb|3EHU|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Corticotropin Releasing Factor Receptor Type 1 (crfr1)
In Complex With Crf
pdb|3EHU|B Chain B, Crystal Structure Of The Extracellular Domain Of Human
Corticotropin Releasing Factor Receptor Type 1 (crfr1)
In Complex With Crf
Length = 476
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 261 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 320
Query: 639 LDMEGMGKGQIWINGQSVGRYWTA 662
ME KG+I N + +W A
Sbjct: 321 ATMENEQKGEIMPNIPQMSAFWYA 344
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 259 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA 318
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 319 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 352
>pdb|3OSQ|A Chain A, Maltose-Bound Maltose Sensor Engineered By Insertion Of
Circularly Permuted Green Fluorescent Protein Into E.
Coli Maltose Binding Protein At Position 175
Length = 661
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 588 VGLRGEAMNLVSPNGISSVEWMQASL-------AVQRQQPL--MWHKAYFNAPEGDEPLA 638
VG+ +N SPN + E+++ L AV + +PL + K+Y D +A
Sbjct: 541 VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELVKDPRIA 600
Query: 639 LDMEGMGKGQIWINGQSVGRYWTAYAKGDCNGCN 672
ME KG+I N + +W A N +
Sbjct: 601 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 634
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,203,746
Number of Sequences: 62578
Number of extensions: 1260819
Number of successful extensions: 2639
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 2603
Number of HSP's gapped (non-prelim): 97
length of query: 816
length of database: 14,973,337
effective HSP length: 107
effective length of query: 709
effective length of database: 8,277,491
effective search space: 5868741119
effective search space used: 5868741119
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)