Query 003490
Match_columns 816
No_of_seqs 333 out of 1546
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 00:25:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003490.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003490hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 9E-232 2E-236 2000.3 74.6 806 4-815 6-814 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 5E-173 1E-177 1454.0 42.1 629 25-737 17-648 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 2.8E-91 6.1E-96 761.4 20.5 297 34-339 1-318 (319)
4 COG1874 LacA Beta-galactosidas 100.0 4E-37 8.7E-42 357.9 14.9 290 28-326 1-333 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.8 9.4E-19 2E-23 195.7 15.3 262 49-342 2-373 (374)
6 PF02836 Glyco_hydro_2_C: Glyc 99.2 7.3E-10 1.6E-14 120.5 19.4 191 28-260 1-212 (298)
7 PRK10150 beta-D-glucuronidase; 99.0 3.4E-08 7.4E-13 117.7 25.1 159 26-219 276-448 (604)
8 PF13364 BetaGal_dom4_5: Beta- 98.9 4.2E-09 9E-14 98.8 7.6 71 618-715 33-109 (111)
9 PRK10340 ebgA cryptic beta-D-g 98.7 2.2E-07 4.7E-12 116.5 19.0 260 26-341 318-603 (1021)
10 PF02140 Gal_Lectin: Galactose 98.7 6.8E-09 1.5E-13 91.5 3.6 52 763-815 1-56 (80)
11 PF00150 Cellulase: Cellulase 98.7 1.5E-07 3.2E-12 100.0 14.4 159 38-218 4-170 (281)
12 PRK09525 lacZ beta-D-galactosi 98.7 2.7E-07 5.9E-12 115.6 19.0 149 26-219 334-488 (1027)
13 PF13364 BetaGal_dom4_5: Beta- 98.7 8.9E-08 1.9E-12 89.9 9.4 85 458-549 23-110 (111)
14 COG3250 LacZ Beta-galactosidas 98.6 7E-07 1.5E-11 108.5 17.3 120 26-187 284-409 (808)
15 PF02837 Glyco_hydro_2_N: Glyc 98.2 8.3E-06 1.8E-10 80.9 9.6 100 465-570 63-164 (167)
16 smart00633 Glyco_10 Glycosyl h 98.0 2.9E-05 6.2E-10 83.0 9.3 116 80-220 3-125 (254)
17 PF03198 Glyco_hydro_72: Gluca 97.8 0.00031 6.6E-09 76.7 14.6 152 25-216 8-179 (314)
18 PLN02161 beta-amylase 97.8 9.7E-05 2.1E-09 84.4 9.8 83 55-141 115-207 (531)
19 PF13204 DUF4038: Protein of u 97.7 0.0013 2.7E-08 72.0 16.7 225 32-286 2-274 (289)
20 PLN02801 beta-amylase 97.7 0.00039 8.4E-09 79.6 12.5 80 55-140 35-126 (517)
21 PLN02705 beta-amylase 97.6 0.00017 3.6E-09 83.7 9.6 80 55-140 266-357 (681)
22 PLN02803 beta-amylase 97.6 0.00032 7E-09 80.7 11.1 81 55-141 105-197 (548)
23 TIGR03356 BGL beta-galactosida 97.6 6.8E-05 1.5E-09 86.1 5.8 97 57-165 54-151 (427)
24 PLN02905 beta-amylase 97.6 0.00025 5.3E-09 82.5 9.8 113 55-181 284-432 (702)
25 PLN00197 beta-amylase; Provisi 97.5 0.00033 7.1E-09 80.8 9.8 81 55-141 125-217 (573)
26 PF01373 Glyco_hydro_14: Glyco 97.5 0.00016 3.6E-09 81.2 6.0 114 58-181 17-152 (402)
27 PF00331 Glyco_hydro_10: Glyco 96.9 0.0026 5.5E-08 70.6 8.5 158 44-221 11-179 (320)
28 KOG4729 Galactoside-binding le 96.9 0.001 2.3E-08 70.2 5.1 57 758-815 43-104 (265)
29 PF02837 Glyco_hydro_2_N: Glyc 96.8 0.0027 5.8E-08 62.9 6.6 67 618-711 66-136 (167)
30 PRK10150 beta-D-glucuronidase; 96.7 0.0079 1.7E-07 72.2 11.2 100 467-572 62-179 (604)
31 COG3693 XynA Beta-1,4-xylanase 96.6 0.011 2.4E-07 64.7 10.3 132 66-220 55-193 (345)
32 PF00232 Glyco_hydro_1: Glycos 96.6 0.00093 2E-08 77.4 2.2 97 57-165 58-156 (455)
33 PRK10340 ebgA cryptic beta-D-g 96.5 0.0081 1.8E-07 76.2 9.5 94 470-572 109-206 (1021)
34 PRK09852 cryptic 6-phospho-bet 96.1 0.0066 1.4E-07 70.8 5.1 96 57-164 71-169 (474)
35 PRK15014 6-phospho-beta-glucos 96.1 0.0065 1.4E-07 70.9 5.0 95 58-164 70-167 (477)
36 PF07745 Glyco_hydro_53: Glyco 96.0 0.019 4.1E-07 64.0 8.1 104 60-187 27-137 (332)
37 COG2730 BglC Endoglucanase [Ca 96.0 0.024 5.2E-07 64.9 9.2 115 55-187 66-193 (407)
38 PRK09525 lacZ beta-D-galactosi 96.0 0.024 5.2E-07 72.0 9.9 94 469-571 119-217 (1027)
39 PLN02998 beta-glucosidase 95.9 0.009 2E-07 70.1 5.2 100 57-164 82-183 (497)
40 PLN02814 beta-glucosidase 95.8 0.011 2.3E-07 69.6 5.1 100 57-164 77-178 (504)
41 PRK13511 6-phospho-beta-galact 95.8 0.012 2.6E-07 68.7 5.4 96 57-164 54-150 (469)
42 PRK09593 arb 6-phospho-beta-gl 95.7 0.014 3E-07 68.3 5.9 100 57-164 73-175 (478)
43 PRK09589 celA 6-phospho-beta-g 95.6 0.015 3.2E-07 68.0 5.6 100 57-164 67-169 (476)
44 PF14488 DUF4434: Domain of un 95.6 0.19 4.1E-06 50.8 12.7 64 52-117 15-86 (166)
45 TIGR01233 lacG 6-phospho-beta- 95.6 0.016 3.4E-07 67.6 5.6 103 57-171 53-156 (467)
46 PLN02849 beta-glucosidase 95.5 0.017 3.7E-07 67.9 5.6 100 57-164 79-180 (503)
47 COG3867 Arabinogalactan endo-1 94.6 0.17 3.6E-06 55.0 9.2 118 59-194 65-191 (403)
48 PF02055 Glyco_hydro_30: O-Gly 93.7 0.77 1.7E-05 54.1 13.2 333 40-402 74-490 (496)
49 COG2723 BglB Beta-glucosidase/ 93.4 0.12 2.6E-06 59.6 5.9 96 57-164 59-157 (460)
50 smart00812 Alpha_L_fucos Alpha 93.3 14 0.00031 42.3 22.2 250 49-350 76-340 (384)
51 PF14871 GHL6: Hypothetical gl 92.4 0.66 1.4E-05 45.2 8.7 97 62-163 5-123 (132)
52 PRK09936 hypothetical protein; 91.7 0.76 1.6E-05 50.2 8.8 58 52-115 33-91 (296)
53 TIGR00542 hxl6Piso_put hexulos 90.8 3.2 6.9E-05 44.7 12.7 131 56-214 15-149 (279)
54 TIGR01515 branching_enzym alph 89.8 3.1 6.8E-05 50.4 12.8 152 64-218 164-347 (613)
55 KOG2230 Predicted beta-mannosi 89.6 4.2 9E-05 48.0 12.6 150 33-222 328-495 (867)
56 smart00642 Aamy Alpha-amylase 87.8 1.3 2.8E-05 44.7 6.5 67 57-123 19-97 (166)
57 PRK13210 putative L-xylulose 5 87.3 4.8 0.00011 43.1 11.1 130 58-214 17-149 (284)
58 PRK14706 glycogen branching en 87.1 9.2 0.0002 46.7 14.3 54 63-116 174-237 (639)
59 PLN02447 1,4-alpha-glucan-bran 86.9 11 0.00025 46.6 15.0 63 56-118 250-322 (758)
60 PRK05402 glycogen branching en 86.0 7.4 0.00016 48.2 12.9 54 63-116 272-335 (726)
61 PF02638 DUF187: Glycosyl hydr 85.2 8.1 0.00018 42.9 11.6 118 55-183 17-162 (311)
62 COG3934 Endo-beta-mannanase [C 83.9 0.76 1.6E-05 53.0 2.8 157 34-208 3-168 (587)
63 PF05913 DUF871: Bacterial pro 83.5 2.3 5E-05 48.2 6.5 71 45-121 2-72 (357)
64 PRK01060 endonuclease IV; Prov 83.4 23 0.0005 38.0 14.0 93 59-180 14-109 (281)
65 PF01261 AP_endonuc_2: Xylose 82.5 2.6 5.6E-05 42.4 5.9 124 63-214 1-128 (213)
66 PRK12568 glycogen branching en 82.2 23 0.0005 43.9 14.6 56 61-118 274-341 (730)
67 cd00019 AP2Ec AP endonuclease 82.0 11 0.00024 40.5 10.9 97 57-182 10-107 (279)
68 PRK14705 glycogen branching en 81.6 22 0.00048 46.5 14.7 56 61-116 770-835 (1224)
69 PF01229 Glyco_hydro_39: Glyco 80.6 4.8 0.0001 47.4 8.0 69 46-117 28-105 (486)
70 PRK13209 L-xylulose 5-phosphat 80.3 13 0.00028 40.0 10.7 125 58-214 22-154 (283)
71 PRK09441 cytoplasmic alpha-amy 79.7 2.8 6E-05 49.2 5.6 61 56-116 18-101 (479)
72 TIGR03234 OH-pyruv-isom hydrox 79.4 22 0.00048 37.6 11.9 42 59-114 16-57 (254)
73 PF14307 Glyco_tran_WbsX: Glyc 79.2 26 0.00056 39.5 12.9 139 54-220 55-197 (345)
74 PRK09856 fructoselysine 3-epim 78.2 30 0.00066 36.9 12.6 130 58-214 14-145 (275)
75 KOG0496 Beta-galactosidase [Ca 77.9 0.5 1.1E-05 56.3 -1.2 51 765-815 332-382 (649)
76 PRK09997 hydroxypyruvate isome 77.9 34 0.00073 36.4 12.8 50 48-114 9-58 (258)
77 COG1649 Uncharacterized protei 77.5 15 0.00033 42.4 10.4 122 55-186 62-210 (418)
78 PF13200 DUF4015: Putative gly 77.1 8.6 0.00019 42.9 8.1 109 55-167 11-137 (316)
79 TIGR02631 xylA_Arthro xylose i 75.9 31 0.00067 39.5 12.5 89 57-164 32-125 (382)
80 PRK09989 hypothetical protein; 75.5 23 0.00049 37.7 10.7 42 59-114 17-58 (258)
81 PF00128 Alpha-amylase: Alpha 75.5 2.8 6E-05 44.7 3.8 56 61-116 8-72 (316)
82 TIGR01531 glyc_debranch glycog 74.9 12 0.00025 49.1 9.4 112 35-152 105-236 (1464)
83 PF02679 ComA: (2R)-phospho-3- 73.2 4.5 9.8E-05 43.5 4.5 52 56-117 83-134 (244)
84 TIGR02402 trehalose_TreZ malto 69.7 7.6 0.00016 46.5 5.9 53 61-116 115-180 (542)
85 PF14683 CBM-like: Polysacchar 68.1 6.1 0.00013 40.0 4.0 61 644-715 92-153 (167)
86 PF13199 Glyco_hydro_66: Glyco 67.5 71 0.0015 38.5 13.3 160 55-220 116-308 (559)
87 cd06593 GH31_xylosidase_YicI Y 66.1 14 0.00031 40.5 6.8 68 54-121 21-91 (308)
88 smart00518 AP2Ec AP endonuclea 64.9 91 0.002 33.3 12.5 101 47-180 3-104 (273)
89 PRK13398 3-deoxy-7-phosphohept 64.3 27 0.00058 38.1 8.3 81 26-116 14-98 (266)
90 cd06595 GH31_xylosidase_XylS-l 64.1 72 0.0016 35.0 11.8 65 55-119 23-97 (292)
91 PRK12313 glycogen branching en 63.9 12 0.00026 45.6 6.2 55 62-116 176-240 (633)
92 PF06832 BiPBP_C: Penicillin-B 63.4 13 0.00029 33.2 4.9 49 493-549 34-83 (89)
93 PLN02960 alpha-amylase 62.6 2.1E+02 0.0046 36.5 16.2 57 60-116 420-486 (897)
94 PRK09505 malS alpha-amylase; R 62.1 14 0.0003 45.5 6.2 58 59-116 232-312 (683)
95 TIGR02403 trehalose_treC alpha 62.0 12 0.00025 44.9 5.5 58 57-116 27-95 (543)
96 COG3623 SgaU Putative L-xylulo 61.2 80 0.0017 34.0 10.6 124 57-213 18-150 (287)
97 TIGR03849 arch_ComA phosphosul 60.7 17 0.00037 38.9 5.8 53 56-118 70-122 (237)
98 TIGR02104 pulA_typeI pullulana 60.3 15 0.00032 44.6 6.0 55 61-116 168-249 (605)
99 PRK10785 maltodextrin glucosid 60.2 15 0.00032 44.5 6.0 57 60-116 182-246 (598)
100 PF11324 DUF3126: Protein of u 59.9 25 0.00053 30.2 5.4 33 499-531 25-59 (63)
101 PF08308 PEGA: PEGA domain; I 59.7 9.1 0.0002 32.5 3.0 39 494-542 3-41 (71)
102 PRK10933 trehalose-6-phosphate 59.1 18 0.00038 43.5 6.3 56 58-116 34-101 (551)
103 PF01791 DeoC: DeoC/LacD famil 58.5 4.7 0.0001 42.7 1.2 53 60-115 79-131 (236)
104 PF02065 Melibiase: Melibiase; 58.2 1.4E+02 0.003 34.5 13.0 165 49-222 50-236 (394)
105 cd04908 ACT_Bt0572_1 N-termina 58.0 35 0.00076 28.5 6.3 55 56-114 12-66 (66)
106 TIGR02456 treS_nterm trehalose 57.7 20 0.00043 42.9 6.4 59 56-116 27-96 (539)
107 PF08531 Bac_rhamnosid_N: Alph 56.8 27 0.0006 35.2 6.4 55 493-548 6-67 (172)
108 COG0296 GlgB 1,4-alpha-glucan 55.7 26 0.00055 42.7 6.8 57 55-115 163-233 (628)
109 KOG0626 Beta-glucosidase, lact 54.7 25 0.00054 41.7 6.3 99 58-164 92-194 (524)
110 COG3589 Uncharacterized conser 54.5 31 0.00066 38.8 6.6 72 45-123 4-76 (360)
111 cd06592 GH31_glucosidase_KIAA1 53.6 40 0.00087 37.2 7.6 68 52-122 25-96 (303)
112 TIGR00677 fadh2_euk methylenet 51.0 63 0.0014 35.5 8.5 109 43-165 130-251 (281)
113 PF01261 AP_endonuc_2: Xylose 50.7 1.1E+02 0.0023 30.6 9.6 104 57-188 27-137 (213)
114 KOG2024 Beta-Glucuronidase GUS 50.3 21 0.00046 38.7 4.4 50 466-516 84-133 (297)
115 PRK08673 3-deoxy-7-phosphohept 49.8 55 0.0012 37.0 7.9 82 26-116 80-164 (335)
116 PF03659 Glyco_hydro_71: Glyco 49.6 66 0.0014 37.0 8.6 54 54-116 14-67 (386)
117 cd06589 GH31 The enzymes of gl 49.2 2.6E+02 0.0056 30.1 12.7 65 55-120 22-90 (265)
118 PRK03705 glycogen debranching 48.8 83 0.0018 38.8 9.8 55 62-116 184-262 (658)
119 TIGR02100 glgX_debranch glycog 47.6 81 0.0018 39.1 9.5 55 62-116 189-265 (688)
120 TIGR02401 trehalose_TreY malto 46.6 42 0.00091 42.2 6.8 64 55-118 14-87 (825)
121 COG1306 Uncharacterized conser 45.9 50 0.0011 36.6 6.4 59 55-116 75-144 (400)
122 PRK14510 putative bifunctional 45.9 29 0.00063 45.6 5.7 56 61-116 191-267 (1221)
123 cd06591 GH31_xylosidase_XylS X 45.6 46 0.00099 37.0 6.5 66 55-121 22-91 (319)
124 PF08531 Bac_rhamnosid_N: Alph 45.4 31 0.00068 34.8 4.7 22 638-659 7-28 (172)
125 cd06545 GH18_3CO4_chitinase Th 44.3 1E+02 0.0022 32.9 8.7 75 87-187 36-111 (253)
126 COG1735 Php Predicted metal-de 43.7 98 0.0021 34.5 8.3 153 26-221 16-173 (316)
127 PLN02361 alpha-amylase 43.3 47 0.001 38.4 6.2 60 57-116 26-96 (401)
128 cd06603 GH31_GANC_GANAB_alpha 43.1 56 0.0012 36.6 6.7 68 55-123 22-91 (339)
129 cd06598 GH31_transferase_CtsZ 42.6 59 0.0013 36.1 6.8 67 55-121 22-95 (317)
130 cd06416 GH25_Lys1-like Lys-1 i 42.5 62 0.0013 33.2 6.4 90 44-136 53-157 (196)
131 PRK14507 putative bifunctional 41.3 53 0.0011 44.4 6.9 60 55-118 756-829 (1693)
132 PRK14511 maltooligosyl trehalo 41.1 58 0.0012 41.3 6.9 62 54-119 17-92 (879)
133 PRK14582 pgaB outer membrane N 40.8 1.3E+02 0.0029 37.1 9.8 110 57-184 334-467 (671)
134 cd06602 GH31_MGAM_SI_GAA This 40.5 60 0.0013 36.5 6.4 74 49-123 13-93 (339)
135 PRK00042 tpiA triosephosphate 39.1 48 0.001 35.8 5.2 49 63-117 79-127 (250)
136 PF04914 DltD_C: DltD C-termin 38.6 58 0.0013 31.8 5.1 51 96-165 36-87 (130)
137 cd06562 GH20_HexA_HexB-like Be 38.5 3.6E+02 0.0077 30.5 12.2 72 32-116 3-90 (348)
138 PLN03059 beta-galactosidase; P 38.3 1.2E+02 0.0026 38.3 8.9 43 618-660 468-517 (840)
139 PRK08645 bifunctional homocyst 38.1 1.1E+02 0.0023 37.5 8.4 110 39-164 460-578 (612)
140 PRK09875 putative hydrolase; P 37.4 2.3E+02 0.005 31.3 10.2 89 27-135 7-95 (292)
141 PF02228 Gag_p19: Major core p 37.2 14 0.00031 32.8 0.6 37 55-108 20-56 (92)
142 TIGR02455 TreS_stutzeri trehal 36.9 70 0.0015 39.2 6.4 76 55-134 76-176 (688)
143 cd00311 TIM Triosephosphate is 36.8 63 0.0014 34.8 5.6 49 63-117 77-125 (242)
144 PF14701 hDGE_amylase: glucano 36.5 1.4E+02 0.003 34.9 8.5 97 50-152 13-128 (423)
145 PLN00196 alpha-amylase; Provis 36.4 71 0.0015 37.2 6.4 57 60-116 47-112 (428)
146 TIGR02102 pullulan_Gpos pullul 35.6 63 0.0014 42.1 6.2 21 96-116 555-575 (1111)
147 cd06599 GH31_glycosidase_Aec37 35.6 97 0.0021 34.4 7.0 66 56-121 28-98 (317)
148 cd06600 GH31_MGAM-like This fa 35.5 80 0.0017 35.1 6.4 66 55-121 22-89 (317)
149 COG3320 Putative dehydrogenase 35.3 20 0.00044 40.8 1.6 37 98-135 175-214 (382)
150 PRK12677 xylose isomerase; Pro 35.0 2.5E+02 0.0054 32.3 10.4 89 58-164 32-124 (384)
151 cd06565 GH20_GcnA-like Glycosy 34.9 2E+02 0.0044 31.8 9.3 59 55-116 15-80 (301)
152 PRK10076 pyruvate formate lyas 34.7 1.8E+02 0.0039 30.6 8.5 126 55-214 52-209 (213)
153 cd06568 GH20_SpHex_like A subg 34.4 91 0.002 35.0 6.6 72 32-116 3-95 (329)
154 cd06604 GH31_glucosidase_II_Ma 34.2 95 0.0021 34.8 6.8 73 49-122 13-90 (339)
155 TIGR00433 bioB biotin syntheta 34.1 62 0.0013 35.1 5.2 53 60-115 123-177 (296)
156 PF07691 PA14: PA14 domain; I 34.0 1.9E+02 0.0041 27.3 8.0 70 471-548 47-122 (145)
157 cd06547 GH85_ENGase Endo-beta- 33.5 1.1E+02 0.0023 34.7 7.0 114 74-218 33-148 (339)
158 smart00854 PGA_cap Bacterial c 33.2 3.4E+02 0.0073 28.6 10.4 49 52-113 59-107 (239)
159 PRK15492 triosephosphate isome 33.1 80 0.0017 34.4 5.7 49 63-117 87-135 (260)
160 cd06601 GH31_lyase_GLase GLase 32.6 3.5E+02 0.0077 30.4 10.9 72 49-121 13-89 (332)
161 PF12876 Cellulase-like: Sugar 32.3 71 0.0015 28.5 4.4 47 172-218 7-62 (88)
162 TIGR00419 tim triosephosphate 32.3 86 0.0019 32.9 5.6 44 63-116 74-117 (205)
163 PF01055 Glyco_hydro_31: Glyco 31.9 1.3E+02 0.0027 34.9 7.4 68 55-123 41-110 (441)
164 TIGR00676 fadh2 5,10-methylene 31.8 2E+02 0.0043 31.3 8.6 110 42-165 125-247 (272)
165 COG2884 FtsE Predicted ATPase 31.2 35 0.00076 35.8 2.4 15 645-659 55-69 (223)
166 cd06564 GH20_DspB_LnbB-like Gl 30.9 1.2E+02 0.0026 33.7 6.9 62 50-116 12-102 (326)
167 TIGR02103 pullul_strch alpha-1 30.7 74 0.0016 40.6 5.6 21 96-116 404-424 (898)
168 PRK14567 triosephosphate isome 30.6 93 0.002 33.8 5.6 49 63-117 78-126 (253)
169 KOG1412 Aspartate aminotransfe 30.4 1.1E+02 0.0023 34.5 6.0 118 56-221 132-250 (410)
170 cd06418 GH25_BacA-like BacA is 30.4 1.7E+02 0.0037 30.8 7.5 90 55-166 50-140 (212)
171 KOG3833 Uncharacterized conser 30.1 51 0.0011 36.7 3.5 53 58-116 444-499 (505)
172 PRK13209 L-xylulose 5-phosphat 30.0 2.8E+02 0.0061 29.7 9.3 104 53-186 53-161 (283)
173 PF14587 Glyco_hydr_30_2: O-Gl 30.0 3.1E+02 0.0068 31.6 9.9 118 85-221 93-227 (384)
174 PRK09856 fructoselysine 3-epim 29.6 72 0.0016 34.0 4.7 59 57-119 90-153 (275)
175 PF10566 Glyco_hydro_97: Glyco 29.5 2.3E+02 0.0051 31.1 8.5 114 54-177 29-160 (273)
176 smart00481 POLIIIAc DNA polyme 29.3 1.3E+02 0.0028 25.0 5.3 43 59-114 17-59 (67)
177 PTZ00333 triosephosphate isome 29.2 1E+02 0.0023 33.4 5.8 48 64-117 83-130 (255)
178 PLN02877 alpha-amylase/limit d 29.2 89 0.0019 40.1 5.9 21 96-116 466-486 (970)
179 cd06563 GH20_chitobiase-like T 29.1 2.5E+02 0.0053 31.8 9.0 72 32-116 3-106 (357)
180 PRK14566 triosephosphate isome 28.7 1.1E+02 0.0023 33.5 5.7 49 63-117 88-136 (260)
181 PRK09432 metF 5,10-methylenete 28.7 1.2E+02 0.0027 33.5 6.4 88 62-165 168-266 (296)
182 cd02742 GH20_hexosaminidase Be 28.2 1.4E+02 0.003 33.0 6.7 60 54-116 13-92 (303)
183 PRK12331 oxaloacetate decarbox 28.1 1.3E+02 0.0028 35.4 6.7 55 49-115 88-142 (448)
184 PRK14565 triosephosphate isome 27.8 97 0.0021 33.3 5.1 49 63-117 78-126 (237)
185 TIGR01370 cysRS possible cyste 27.8 4.2E+02 0.0091 29.8 10.3 140 62-219 152-304 (315)
186 cd00537 MTHFR Methylenetetrahy 27.6 1.9E+02 0.0041 31.3 7.5 104 48-165 138-250 (274)
187 cd01299 Met_dep_hydrolase_A Me 26.9 1.5E+02 0.0032 32.6 6.7 59 55-116 118-180 (342)
188 PRK09267 flavodoxin FldA; Vali 26.6 4.4E+02 0.0096 26.0 9.5 74 37-113 44-117 (169)
189 PF01120 Alpha_L_fucos: Alpha- 26.6 9.6E+02 0.021 27.0 20.0 231 63-345 97-342 (346)
190 cd06597 GH31_transferase_CtsY 26.4 1.6E+02 0.0035 33.1 6.9 73 49-121 13-110 (340)
191 PF12733 Cadherin-like: Cadher 26.2 1.5E+02 0.0033 26.0 5.4 43 494-545 28-71 (88)
192 PLN02429 triosephosphate isome 26.1 1E+02 0.0022 34.5 5.1 49 63-117 140-188 (315)
193 cd03789 GT1_LPS_heptosyltransf 25.4 1.1E+02 0.0023 32.8 5.1 77 42-121 124-212 (279)
194 cd06522 GH25_AtlA-like AtlA is 25.4 2.5E+02 0.0053 28.8 7.5 78 57-177 42-128 (192)
195 TIGR01361 DAHP_synth_Bsub phos 25.1 2.1E+02 0.0046 31.1 7.2 82 26-116 12-96 (260)
196 PRK12858 tagatose 1,6-diphosph 25.1 75 0.0016 36.0 3.9 66 48-116 98-163 (340)
197 COG1523 PulA Type II secretory 25.0 1E+02 0.0023 38.1 5.4 55 62-116 205-285 (697)
198 KOG4039 Serine/threonine kinas 25.0 94 0.002 32.3 4.1 70 47-121 99-171 (238)
199 PF14307 Glyco_tran_WbsX: Glyc 25.0 1.1E+02 0.0024 34.4 5.3 44 31-76 150-194 (345)
200 PF03102 NeuB: NeuB family; I 24.9 1.1E+02 0.0024 33.0 4.9 65 53-117 52-121 (241)
201 COG0366 AmyA Glycosidases [Car 24.9 90 0.002 36.1 4.7 56 61-116 33-97 (505)
202 PF01075 Glyco_transf_9: Glyco 24.9 64 0.0014 33.6 3.2 77 39-118 104-194 (247)
203 PRK06703 flavodoxin; Provision 24.8 3.2E+02 0.007 26.4 7.9 103 37-164 46-148 (151)
204 PLN02540 methylenetetrahydrofo 24.8 1.7E+02 0.0037 35.5 6.9 90 62-165 161-259 (565)
205 smart00758 PA14 domain in bact 24.7 2.8E+02 0.006 26.2 7.3 67 471-546 45-112 (136)
206 COG3915 Uncharacterized protei 24.3 3.1E+02 0.0067 27.2 7.3 47 62-114 39-87 (155)
207 PRK13210 putative L-xylulose 5 24.1 1.2E+02 0.0025 32.5 5.0 60 57-117 94-154 (284)
208 COG0149 TpiA Triosephosphate i 23.9 1.4E+02 0.0031 32.3 5.6 49 63-117 81-129 (251)
209 PF00282 Pyridoxal_deC: Pyrido 23.7 1.4E+02 0.0031 34.0 5.9 71 38-115 139-230 (373)
210 PLN02561 triosephosphate isome 23.7 1.4E+02 0.0031 32.4 5.5 49 63-117 81-129 (253)
211 cd02875 GH18_chitobiase Chitob 23.6 7.1E+02 0.015 28.2 11.4 57 99-186 67-123 (358)
212 COG1891 Uncharacterized protei 23.3 26 0.00057 35.9 -0.1 66 42-115 116-186 (235)
213 PRK10422 lipopolysaccharide co 23.0 1.7E+02 0.0037 32.6 6.3 65 51-118 196-273 (352)
214 cd00544 CobU Adenosylcobinamid 22.9 5E+02 0.011 26.1 9.1 48 152-207 101-148 (169)
215 cd07937 DRE_TIM_PC_TC_5S Pyruv 22.9 2E+02 0.0043 31.4 6.6 49 54-114 88-136 (275)
216 PF00121 TIM: Triosephosphate 22.9 57 0.0012 35.1 2.3 49 63-117 77-125 (244)
217 PF00120 Gln-synt_C: Glutamine 22.8 1.5E+02 0.0034 31.7 5.7 61 55-120 67-139 (259)
218 cd04882 ACT_Bt0572_2 C-termina 22.7 1.7E+02 0.0036 23.6 4.7 55 56-112 10-64 (65)
219 PRK14040 oxaloacetate decarbox 22.0 1.6E+02 0.0036 35.8 6.2 54 49-114 89-142 (593)
220 PLN02389 biotin synthase 21.8 1.2E+02 0.0026 34.8 4.8 50 60-112 178-229 (379)
221 cd04740 DHOD_1B_like Dihydroor 21.7 2.4E+02 0.0052 30.7 7.0 60 55-118 100-163 (296)
222 PF08924 DUF1906: Domain of un 21.4 1.7E+02 0.0037 28.5 5.2 91 55-165 36-127 (136)
223 cd06570 GH20_chitobiase-like_1 21.3 2.1E+02 0.0045 31.9 6.4 60 54-116 15-88 (311)
224 PF08306 Glyco_hydro_98M: Glyc 21.3 73 0.0016 35.6 2.8 89 43-156 104-200 (324)
225 TIGR00587 nfo apurinic endonuc 21.2 6.1E+02 0.013 27.3 9.9 83 60-164 14-98 (274)
226 PRK10966 exonuclease subunit S 21.1 6.5E+02 0.014 29.2 10.6 86 41-138 41-135 (407)
227 PRK10426 alpha-glucosidase; Pr 20.7 9.5E+02 0.021 29.6 12.4 66 57-122 221-295 (635)
228 PRK07094 biotin synthase; Prov 20.6 94 0.002 34.3 3.6 50 60-112 129-181 (323)
229 TIGR03700 mena_SCO4494 putativ 20.4 77 0.0017 35.7 2.9 51 60-113 150-205 (351)
230 PLN02784 alpha-amylase 20.3 2E+02 0.0043 36.6 6.4 57 60-116 524-588 (894)
231 PF13380 CoA_binding_2: CoA bi 20.2 2E+02 0.0044 27.1 5.2 44 54-113 63-106 (116)
232 TIGR02195 heptsyl_trn_II lipop 20.2 2E+02 0.0044 31.6 6.1 80 39-118 173-262 (334)
233 TIGR01698 PUNP purine nucleoti 20.2 1.5E+02 0.0032 32.0 4.7 39 36-74 47-86 (237)
234 PRK09997 hydroxypyruvate isome 20.1 1.5E+02 0.0032 31.6 4.8 60 57-116 85-144 (258)
235 PF07755 DUF1611: Protein of u 20.0 68 0.0015 35.7 2.3 115 42-221 35-151 (301)
236 PF03422 CBM_6: Carbohydrate b 20.0 3.7E+02 0.008 24.9 7.0 46 502-547 60-111 (125)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=9.1e-232 Score=2000.35 Aligned_cols=806 Identities=65% Similarity=1.189 Sum_probs=752.5
Q ss_pred hhHHHHHHHHHHHHhhhccccceeEEEecCeEEECCEEeEEEEEEeeCCCCCHhhHHHHHHHHHHCCCCEEEeceecccc
Q 003490 4 LFVYRMLIVFCLSLCLCCHHIHCSVTYDRKALLINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVH 83 (816)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~idG~~~~l~sG~~Hy~R~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~h 83 (816)
|.|..+|.+++|++..+....+.+|+||+++|+|||||++|+||+|||||+||++|+|+|+||||+|||||+||||||+|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~H 85 (840)
T PLN03059 6 LVVFLLLFLLFLLSSSWVSHGSASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGH 85 (840)
T ss_pred eehhhHHHHHHHhhhhhhccceeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEeccccc
Confidence 34444444444444456666678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccccccCCeEeecCChhHHHHHHHHHHHHHHHH
Q 003490 84 EPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLM 163 (816)
Q Consensus 84 Ep~~G~ydF~g~~dl~~fi~la~~~GL~vilR~GPYicaEw~~GGlP~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l 163 (816)
||+||+|||+|++||++||++|||+||||||||||||||||++||||.||+++|+|++||+||+|+++|++|+++|+++|
T Consensus 86 Ep~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l 165 (840)
T PLN03059 86 EPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMM 165 (840)
T ss_pred CCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccccccCCceEEecccccccccccccCcccHHHHHHHHHHHHHcCCCcceeecCCCCCCCccccCCCCCccCCCCCC
Q 003490 164 KSENLFESQGGPIILSQIENEYGAQSKLLGAAGHNYMTWAAKMAVEMGTGVPWVMCKEEDAPDPVINSCNGFYCDAFTPN 243 (816)
Q Consensus 164 ~~~~l~~~~gGpII~~QiENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~vp~~~~~~~~~~~~vi~t~ng~~~~~~~~~ 243 (816)
++++|++++||||||+|||||||++..+|+.+|++||+||++|++++|++|||+||++.++++++++||||.+|+.|.+.
T Consensus 166 ~~~~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~~~f~~~ 245 (840)
T PLN03059 166 KSEKLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPN 245 (840)
T ss_pred hhcceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchhhhcccC
Confidence 98899999999999999999999988778889999999999999999999999999998888899999999999999988
Q ss_pred CCCCCceeeecccccccccCCCCCcCCHHHHHHHHHHHHHhCCeeeeeeEeeccCCCCCCCCCCCccccCCCCCCCCcCC
Q 003490 244 QPYKPTIWTEAWSGWFTEFGGPIHQRPVQDLAFAAARFIQKGGSFINYYMYHGGTNFGRSAGGPFITTSYDYDAPIDEYG 323 (816)
Q Consensus 244 ~p~~P~~~tE~w~Gwf~~wG~~~~~r~~~d~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~TSYDYdAPl~E~G 323 (816)
++.+|+||||||+|||++||++++.|+++|+|++++++|++|+|++||||||||||||||||+++++|||||||||+|+|
T Consensus 246 ~~~~P~m~tE~w~GWf~~wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G 325 (840)
T PLN03059 246 KDYKPKMWTEAWTGWYTEFGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYG 325 (840)
T ss_pred CCCCCcEEeccCchhHhhcCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCcccccc
Confidence 88899999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHhhhccccCCCCccccCCCccceeeeccCCCceeeEeeecCCccceEEEecceeeccCCccee
Q 003490 324 LIRQPKYGHLKELHRAIKMCERALVSADPIVTSLGGFQQAHVYSSESGDCAAFLSNYDTKSAARVLFNNMHYNLPPWSIS 403 (816)
Q Consensus 324 ~~~~pKy~~lr~l~~~i~~~~~~l~~~~p~~~~lg~~~~~~~y~~~~~~~~~fl~n~~~~~~~~v~~~~~~~~lp~~svs 403 (816)
++|+|||.|||+||++++.++++|+..+|....||+.+++++|...+ .|++|+.|++++.+++|+|+|++|.|||||||
T Consensus 326 ~~t~pKy~~lr~l~~~~~~~~~~l~~~~p~~~~lg~~~ea~~y~~~~-~caaFl~n~~~~~~~~v~f~g~~y~lp~~Svs 404 (840)
T PLN03059 326 LPREPKWGHLRDLHKAIKLCEPALVSVDPTVTSLGSNQEAHVFKSKS-ACAAFLANYDTKYSVKVTFGNGQYDLPPWSVS 404 (840)
T ss_pred CcchhHHHHHHHHHHHHHhcCccccCCCCceeccCCceeEEEccCcc-chhhheeccCCCCceeEEECCcccccCcccee
Confidence 99778999999999999999999998888888999999999999766 79999999999999999999999999999999
Q ss_pred ecCCCcceeeecceecccccccccccccccccccccccccccc-CCCCCccccccchhhccCCCCCccEEEEEEEecCCC
Q 003490 404 VLPDCRNVVFNTAKVGVQTSQMEMLPANAEMFSWESYFEDISS-LDDSSTFTTQGLLEQINVTRDASDYLWYITSVDIGS 482 (816)
Q Consensus 404 ilpdc~~v~~~ta~v~~q~~~~~~~~~~~~~~~w~~~~e~~~~-~~~~~~~~~~~~~Eql~~t~d~sgYlwY~T~i~~~~ 482 (816)
|||||++++|||+++++|++.++..+. ...+.|+++.|++.+ .. +.++++.+++||+++|+|.+||+||+|+|....
T Consensus 405 ilpd~~~~lfnta~v~~q~~~~~~~~~-~~~~~w~~~~e~~~~~~~-~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~ 482 (840)
T PLN03059 405 ILPDCKTAVFNTARLGAQSSQMKMNPV-GSTFSWQSYNEETASAYT-DDTTTMDGLWEQINVTRDATDYLWYMTEVHIDP 482 (840)
T ss_pred ecccccceeeeccccccccceeecccc-cccccceeeccccccccc-CCCcchhhHHHhhcccCCCCceEEEEEEEeecC
Confidence 999999999999999999877654322 245699999999543 33 568889999999999999999999999999877
Q ss_pred CcccccCCCCceEEeCCcceEEEEEECCEEEEEEEcccccceeEEEeeeeccCCCcEEEEEEecCCccccccCCCccccc
Q 003490 483 SESFLHGGELPTLIVQSTGHALHIFINGQLSGSAFGTREARRFMYTGKVNLRAGRNKIALLSVAVGLPNVGGHYETWNTG 562 (816)
Q Consensus 483 ~~~~~~~g~~~~L~v~~~~d~~~vfVNg~~vG~~~~~~~~~~~~~~~~i~l~~G~n~L~ILven~Gr~NyG~~~e~~~kG 562 (816)
++..++++.+++|+|.+++|++||||||+++|++++++....++++.+|+|+.|.|+|+||||||||+|||++|+++.||
T Consensus 483 ~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le~~~kG 562 (840)
T PLN03059 483 DEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFETWNAG 562 (840)
T ss_pred CccccccCCCceEEEcccCcEEEEEECCEEEEEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCccCccccccccc
Confidence 76556778899999999999999999999999999988778899999999999999999999999999999999999999
Q ss_pred ccccEEEecccCCcccCccCCcEEeccCccccccccCCCCCCCccccccccccccCCCceEEEEEEeCCCCCCCeEEeeC
Q 003490 563 ILGPVALHGLDQGKWDLSWQKWTYQVGLRGEAMNLVSPNGISSVEWMQASLAVQRQQPLMWHKAYFNAPEGDEPLALDME 642 (816)
Q Consensus 563 I~G~V~l~g~~~g~~dLt~~~W~y~~gL~gE~~~~~~~~~~~~~~W~~~~~~~~~~~~~twYk~~F~~p~g~dp~~Ldl~ 642 (816)
|+|+|+|+|+++++.||+++.|.|+++|+||.++|+++++..+++|...+..+. .+||+|||++|++|++.|||||||+
T Consensus 563 I~g~V~i~g~~~g~~dls~~~W~y~lgL~GE~~~i~~~~~~~~~~W~~~~~~~~-~~p~twYK~~Fd~p~g~Dpv~LDm~ 641 (840)
T PLN03059 563 VLGPVTLKGLNEGTRDLSGWKWSYKIGLKGEALSLHTITGSSSVEWVEGSLLAQ-KQPLTWYKTTFDAPGGNDPLALDMS 641 (840)
T ss_pred ccccEEEecccCCceecccCccccccCccceeccccccCCCCCccccccccccC-CCCceEEEEEEeCCCCCCCEEEecc
Confidence 999999999999999999999999999999999999876666889977654444 5689999999999999999999999
Q ss_pred CCccEEEEECCeeeeeeeeccc--cCCCCCcccccCcCCCcccCCCCCcceeeeecCcccccCCcceEEEEEecCCCCcc
Q 003490 643 GMGKGQIWINGQSVGRYWTAYA--KGDCNGCNYVGGYRPTKCQLGCGQPTQRWYHVPRSWLKPTQNFLVVFEELGGNPSR 720 (816)
Q Consensus 643 g~gKG~~wVNG~niGRYW~~~~--~g~~~~c~y~G~y~~~kc~~~cg~PqqtlYhVP~~~Lk~g~N~LVlfEe~gg~p~~ 720 (816)
|||||+|||||+||||||+.++ +|| +.|||+|+|+++||+||||+||||||||||+|||+|+|+||||||+|++|..
T Consensus 642 gmGKG~aWVNG~nIGRYW~~~a~~~gC-~~c~y~g~~~~~kc~~~cggP~q~lYHVPr~~Lk~g~N~lViFEe~gg~p~~ 720 (840)
T PLN03059 642 SMGKGQIWINGQSIGRHWPAYTAHGSC-NGCNYAGTFDDKKCRTNCGEPSQRWYHVPRSWLKPSGNLLIVFEEWGGNPAG 720 (840)
T ss_pred cCCCeeEEECCcccccccccccccCCC-ccccccccccchhhhccCCCceeEEEeCcHHHhccCCceEEEEEecCCCCCc
Confidence 9999999999999999998753 577 8899999999999999999999999999999999999999999999999999
Q ss_pred eEEEeeehhhhcccccccCccccccccccCCCCCcCCCCeEEeeCCCCCeEeEEeeeecCCCccCCCCcCcccccCCchH
Q 003490 721 ISLVKRSVTSVCAEVAEYHPTIKNWHIESYGKPEEFHSPKVHLRCSPGHTISSIKFASFGTPLGTCGSYQQGPCHSPTSY 800 (816)
Q Consensus 721 I~~~~~~~~~vc~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~L~C~~g~~Is~I~fAs~G~p~G~Cg~~~~g~C~~~~s~ 800 (816)
|+|+++++++||++++|+||++++|++.+... .....+.++|+|+.|++|++|+|||||||+|+|++++.|+|||++|+
T Consensus 721 I~~~~~~~~~~c~~~~e~~p~~~~w~~~~~~~-~~~~~~~~~L~C~~G~~Is~I~fAsYGrp~gtC~~~~~g~C~a~~S~ 799 (840)
T PLN03059 721 ISLVKRTTDSVCADIFEGQPALKNWQIIASGK-VNSLQPKAHLWCPPGQKISKIKFASFGVPQGTCGSFREGSCHAHKSY 799 (840)
T ss_pred eEEEEeecCcccccccccCCcccccccccccc-ccccCCcEEEECCCCceEEEEEEecCCCCCCCCCCCCCCCEeCCcHH
Confidence 99999999999999999998899999955444 45679999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCcccc
Q 003490 801 DILEKVFITALISSV 815 (816)
Q Consensus 801 ~iv~~~C~G~~~C~v 815 (816)
++|+|+|+||++|+|
T Consensus 800 ~vV~kaC~Gk~~CsV 814 (840)
T PLN03059 800 DAFERNCIGKQSCSV 814 (840)
T ss_pred HHHHHHCCCCCceEE
Confidence 999999999999998
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.8e-173 Score=1454.03 Aligned_cols=629 Identities=61% Similarity=1.139 Sum_probs=589.9
Q ss_pred ceeEEEecCeEEECCEEeEEEEEEeeCCCCCHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHH
Q 003490 25 HCSVTYDRKALLINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKT 104 (816)
Q Consensus 25 ~~~v~~d~~~~~idG~~~~l~sG~~Hy~R~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~l 104 (816)
++.|+||+++|+|||+|++++||+|||||++|+||+|+|+|||++|+|+|+||||||.|||+||+|||+|++||++||++
T Consensus 17 ~~~v~yd~~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl 96 (649)
T KOG0496|consen 17 SFNVTYDKRSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKL 96 (649)
T ss_pred eeEEeccccceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEecCceeeeecCCCCCCccccccCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEeccccc
Q 003490 105 IQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENE 184 (816)
Q Consensus 105 a~~~GL~vilR~GPYicaEw~~GGlP~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QiENE 184 (816)
|+++|||||||+||||||||++||||.||..+|+|.+||+|++|+++|++|+++|+++|| +|+++|||||||+|||||
T Consensus 97 ~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGPIIl~QIENE 174 (649)
T KOG0496|consen 97 IHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGPIILVQIENE 174 (649)
T ss_pred HHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCCEEEEEeech
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred ccccccccCcccHHHHHHHHHHHHHcCCCcceeecCCCCCCCccccCCCCCcc-CCCC-CCCCCCCceeeeccccccccc
Q 003490 185 YGAQSKLLGAAGHNYMTWAAKMAVEMGTGVPWVMCKEEDAPDPVINSCNGFYC-DAFT-PNQPYKPTIWTEAWSGWFTEF 262 (816)
Q Consensus 185 yg~~~~~~~~~~~~Y~~~l~~~~~~~g~~vp~~~~~~~~~~~~vi~t~ng~~~-~~~~-~~~p~~P~~~tE~w~Gwf~~w 262 (816)
||.+..+|++.+++|++|.+.|+..++.+|||+||+|.|+|+++|++|||++| +.|. +++|++|+||||||+|||++|
T Consensus 175 YG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~~w 254 (649)
T KOG0496|consen 175 YGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFTHW 254 (649)
T ss_pred hhHHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecccccchhhhh
Confidence 99998889999999999999999999999999999999999999999999999 9998 999999999999999999999
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhCCeeeeeeEeeccCCCCCCCCCCCccccCCCCCCCCcCCCCCchhHHHHHHHHHHHHh
Q 003490 263 GGPIHQRPVQDLAFAAARFIQKGGSFINYYMYHGGTNFGRSAGGPFITTSYDYDAPIDEYGLIRQPKYGHLKELHRAIKM 342 (816)
Q Consensus 263 G~~~~~r~~~d~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~TSYDYdAPl~E~G~~~~pKy~~lr~l~~~i~~ 342 (816)
|++++.|++||+++.|++|+++|+|++|||||||||||||||| ++.+|||||||||| |..|+|||+|+|.+|..++.
T Consensus 255 Gg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G-~~~atsy~~dap~d--gl~~~pk~ghlk~~hts~d~ 331 (649)
T KOG0496|consen 255 GGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNG-PFIATSYDYDAPLD--GLLRQPKYGHLKPLHTSYDY 331 (649)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccC-cccccccccccccc--hhhcCCCccccccchhhhhh
Confidence 9999999999999999999999999999999999999999998 99999999999999 99999999999999999999
Q ss_pred hhccccCCCCccccCCCccceeeeccCCCceeeEeeecCCccceEEEecceeeccCCcceeecCCCcceeeecceecccc
Q 003490 343 CERALVSADPIVTSLGGFQQAHVYSSESGDCAAFLSNYDTKSAARVLFNNMHYNLPPWSISVLPDCRNVVFNTAKVGVQT 422 (816)
Q Consensus 343 ~~~~l~~~~p~~~~lg~~~~~~~y~~~~~~~~~fl~n~~~~~~~~v~~~~~~~~lp~~svsilpdc~~v~~~ta~v~~q~ 422 (816)
|++.+..+++...++|+.++ .|++|+.|++....+.+.|++.+|.+|+|||+|||||++++|||+++.+|
T Consensus 332 ~ep~lv~gd~~~~kyg~~~~---------~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~~- 401 (649)
T KOG0496|consen 332 CEPALVAGDITTAKYGNLRE---------ACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMAQ- 401 (649)
T ss_pred cCccccccCcccccccchhh---------HHHHHHhcCCCCCCCccccCCCccccCceeEEechhhcchhhhccccccc-
Confidence 99999999877766666544 49999999999999999999999999999999999999999999988543
Q ss_pred ccccccccccccccccccccccccCCCCCccccccchhhccCCCCCccEEEEEEEecCCCCcccccCCCCceEEeC-Ccc
Q 003490 423 SQMEMLPANAEMFSWESYFEDISSLDDSSTFTTQGLLEQINVTRDASDYLWYITSVDIGSSESFLHGGELPTLIVQ-STG 501 (816)
Q Consensus 423 ~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~~~~~Eql~~t~d~sgYlwY~T~i~~~~~~~~~~~g~~~~L~v~-~~~ 501 (816)
|....||+++ |..++ .++|++|+|.++.+.+++ ..|+|. +++
T Consensus 402 --------------~~~~~e~~~~-------------~~~~~---~~~~ll~~~~~t~d~sd~-------t~~~i~ls~g 444 (649)
T KOG0496|consen 402 --------------WISFTEPIPS-------------EAVGQ---SFGGLLEQTNLTKDKSDT-------TSLKIPLSLG 444 (649)
T ss_pred --------------cccccCCCcc-------------ccccC---cceEEEEEEeeccccCCC-------ceEeeccccc
Confidence 5555666554 44433 677888888887655442 357888 999
Q ss_pred eEEEEEECCEEEEEEEcccccceeEEEeeeeccCCCcEEEEEEecCCccccccCCCcccccccccEEEecccCCcccCcc
Q 003490 502 HALHIFINGQLSGSAFGTREARRFMYTGKVNLRAGRNKIALLSVAVGLPNVGGHYETWNTGILGPVALHGLDQGKWDLSW 581 (816)
Q Consensus 502 d~~~vfVNg~~vG~~~~~~~~~~~~~~~~i~l~~G~n~L~ILven~Gr~NyG~~~e~~~kGI~G~V~l~g~~~g~~dLt~ 581 (816)
|++||||||+++|+++++.....+.+..++.|+.|.|+|+||||||||+||| +++++.|||+|+|+|+|+ +||++
T Consensus 445 ~~~hVfvNg~~~G~~~g~~~~~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G-~~e~~~~Gi~g~v~l~g~----~~l~~ 519 (649)
T KOG0496|consen 445 HALHVFVNGEFAGSLHGNNEKIKLNLSQPVGLKAGENKLALLSENVGLPNYG-HFENDFKGILGPVYLNGL----IDLTW 519 (649)
T ss_pred ceEEEEECCEEeeeEeccccceeEEeecccccccCcceEEEEEEecCCCCcC-cccccccccccceEEeee----eccce
Confidence 9999999999999999988778889999999999999999999999999999 889999999999999987 68888
Q ss_pred CCcEEeccCccccccccCCCCCCCccccccccccccCCCceEEEEEEeCCCCCCCeEEeeCCCccEEEEECCeeeeeeee
Q 003490 582 QKWTYQVGLRGEAMNLVSPNGISSVEWMQASLAVQRQQPLMWHKAYFNAPEGDEPLALDMEGMGKGQIWINGQSVGRYWT 661 (816)
Q Consensus 582 ~~W~y~~gL~gE~~~~~~~~~~~~~~W~~~~~~~~~~~~~twYk~~F~~p~g~dp~~Ldl~g~gKG~~wVNG~niGRYW~ 661 (816)
++|.|+++|+||.+.+|++++..+++|...+..+. .+|++||| +|++|++.+||||||.|||||+|||||+|||||||
T Consensus 520 ~~w~~~~gl~ge~~~~~~~~~~~~v~w~~~~~~~~-k~P~~w~k-~f~~p~g~~~t~Ldm~g~GKG~vwVNG~niGRYW~ 597 (649)
T KOG0496|consen 520 TKWPYKVGLKGEKLGLHTEEGSSKVKWKKLSNTAT-KQPLTWYK-TFDIPSGSEPTALDMNGWGKGQVWVNGQNIGRYWP 597 (649)
T ss_pred eecceecccccchhhccccccccccceeeccCccc-CCCeEEEE-EecCCCCCCCeEEecCCCcceEEEECCcccccccC
Confidence 89999999999999999998888999987765455 47999999 99999999999999999999999999999999999
Q ss_pred ccccCCCCCcccccCcCCCcccCCCCCcceeeeecCcccccCCcceEEEEEecCCCCcceEEEeeehhhhcccccc
Q 003490 662 AYAKGDCNGCNYVGGYRPTKCQLGCGQPTQRWYHVPRSWLKPTQNFLVVFEELGGNPSRISLVKRSVTSVCAEVAE 737 (816)
Q Consensus 662 ~~~~g~~~~c~y~G~y~~~kc~~~cg~PqqtlYhVP~~~Lk~g~N~LVlfEe~gg~p~~I~~~~~~~~~vc~~~~e 737 (816)
++ | | |++|||||+|||++.|+||||||+|++|..|+|+++++..+|+.+.|
T Consensus 598 ~~-----------G-------------~-Q~~yhvPr~~Lk~~~N~lvvfEee~~~p~~i~~~~~~~~~~~~~v~~ 648 (649)
T KOG0496|consen 598 SF-----------G-------------P-QRTYHVPRSWLKPSGNLLVVFEEEGGDPNGISFVTRPVLSTCAYVRE 648 (649)
T ss_pred CC-----------C-------------C-ceEEECcHHHhCcCCceEEEEEeccCCCccceEEEeEeeeEeeeccc
Confidence 75 5 7 56677999999999999999999999999999999999999999877
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=2.8e-91 Score=761.42 Aligned_cols=297 Identities=43% Similarity=0.838 Sum_probs=233.2
Q ss_pred eEEECCEEeEEEEEEeeCCCCCHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEE
Q 003490 34 ALLINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAH 113 (816)
Q Consensus 34 ~~~idG~~~~l~sG~~Hy~R~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vi 113 (816)
+|+|||||++|+||||||+|+||++|+|+|+||||+|+|||+||||||+|||+||+|||+|++||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCceeeeecCCCCCCccccccCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEecccccccccccccC
Q 003490 114 LRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLG 193 (816)
Q Consensus 114 lR~GPYicaEw~~GGlP~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QiENEyg~~~~~~~ 193 (816)
|||||||||||++||+|.||.+++++++||+|+.|+++|++|+++|+++++ ++++++||||||+|||||||..
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GGpII~vQvENEyg~~----- 153 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIK--PLQYTNGGPIIMVQVENEYGSY----- 153 (319)
T ss_dssp EEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEEESSSGGCT-----
T ss_pred ecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHH--hhhhcCCCceehhhhhhhhCCC-----
Confidence 999999999999999999999999999999999999999999999999999 8999999999999999999952
Q ss_pred cccHHHHHHHHHHHHHcCCC-cceeecCCC--------CCCCccccCCCCCccCC--------CCCCCCCCCceeeeccc
Q 003490 194 AAGHNYMTWAAKMAVEMGTG-VPWVMCKEE--------DAPDPVINSCNGFYCDA--------FTPNQPYKPTIWTEAWS 256 (816)
Q Consensus 194 ~~~~~Y~~~l~~~~~~~g~~-vp~~~~~~~--------~~~~~vi~t~ng~~~~~--------~~~~~p~~P~~~tE~w~ 256 (816)
.++++||+.|++++++.+++ ++.++++.. ++|+..+.+++++.|.. ..+.+|++|+|++|||+
T Consensus 154 ~~~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~ 233 (319)
T PF01301_consen 154 GTDRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWG 233 (319)
T ss_dssp SS-HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEES
T ss_pred cccHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEecc
Confidence 38999999999999999998 667777642 23443455555566632 12557889999999999
Q ss_pred ccccccCCCCCcCCHHHHHHHHHHHHHhCCeeeeeeEeeccCCCCCCCCCCCc----cccCCCCCCCCcCCCCCchhHHH
Q 003490 257 GWFTEFGGPIHQRPVQDLAFAAARFIQKGGSFINYYMYHGGTNFGRSAGGPFI----TTSYDYDAPIDEYGLIRQPKYGH 332 (816)
Q Consensus 257 Gwf~~wG~~~~~r~~~d~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~----~TSYDYdAPl~E~G~~~~pKy~~ 332 (816)
|||++||++++.+++++++..+++++++|.+ +||||||||||||+++|+... +|||||||||+|+|++ +|||.+
T Consensus 234 Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g~~-~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~-~~Ky~~ 311 (319)
T PF01301_consen 234 GWFDHWGGPHYTRPAEDVAADLARMLSKGNS-LNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQL-TPKYYE 311 (319)
T ss_dssp S---BTTS--HHHHHHHHHHHHHHHHHHCSE-EEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHH
T ss_pred ccccccCCCCccCCHHHHHHHHHHHHHhhcc-cceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCc-CHHHHH
Confidence 9999999999999999999999999999966 799999999999999987654 5999999999999999 599999
Q ss_pred HHHHHHH
Q 003490 333 LKELHRA 339 (816)
Q Consensus 333 lr~l~~~ 339 (816)
||+||++
T Consensus 312 lr~l~~~ 318 (319)
T PF01301_consen 312 LRRLHQK 318 (319)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999874
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4e-37 Score=357.86 Aligned_cols=290 Identities=23% Similarity=0.349 Sum_probs=215.2
Q ss_pred EEEecCeEEECCEEeEEEEEEeeCCCCCHhhHHHHHHHHHHCCCCEEEe-ceeccccCCCCceeeecccchHHHHHHHHH
Q 003490 28 VTYDRKALLINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIET-YVFWNVHEPSPGNYNFEGRYDLVRFIKTIQ 106 (816)
Q Consensus 28 v~~d~~~~~idG~~~~l~sG~~Hy~R~~~~~W~d~l~k~Ka~GlNtI~t-yvfWn~hEp~~G~ydF~g~~dl~~fi~la~ 106 (816)
|.+++..+++||+|++++||.+||+|+|+++|.|||+|||++|+|+|++ |+.||.|||++|+|||+ .+|+. ||++|+
T Consensus 1 ~~~~~~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~ 78 (673)
T COG1874 1 VSYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAY 78 (673)
T ss_pred CcccccceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHH
Confidence 4678899999999999999999999999999999999999999999999 99999999999999999 88999 999999
Q ss_pred HcCCEEEEecCc-eeeeecCCCCCCccccccCCeEee---------cCChhHHHHHHHHHHHHHHHHHhcccccccCCce
Q 003490 107 KAGLYAHLRIGP-YVCAEWNFGGFPVWLKYVPGISFR---------TDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPI 176 (816)
Q Consensus 107 ~~GL~vilR~GP-YicaEw~~GGlP~WL~~~p~i~~R---------t~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpI 176 (816)
+.||+||||||| ..|.+|..+++|.||..++.-..| .+++-|++++++.+.+|.+++ +++|++|
T Consensus 79 ~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~------~~~~~~v 152 (673)
T COG1874 79 KAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERL------YGNGPAV 152 (673)
T ss_pred hcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHH------hccCCce
Confidence 999999999999 999999999999999876653333 345668888877444444433 5899999
Q ss_pred EEecccccccccccccCcccHHHHHHHHHHHHHc-CCCcceeecC-CCCCCC-ccccCCC-----CCcc--CCCCCCCCC
Q 003490 177 ILSQIENEYGAQSKLLGAAGHNYMTWAAKMAVEM-GTGVPWVMCK-EEDAPD-PVINSCN-----GFYC--DAFTPNQPY 246 (816)
Q Consensus 177 I~~QiENEyg~~~~~~~~~~~~Y~~~l~~~~~~~-g~~vp~~~~~-~~~~~~-~vi~t~n-----g~~~--~~~~~~~p~ 246 (816)
|+||++||||.+.+.++.|.+.+..||++.+-.+ ...-+|=+.- ..+..+ ..|.+.+ ...- -+|......
T Consensus 153 ~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~~~~~~~ld~~~f~~e 232 (673)
T COG1874 153 ITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGELPLPGLYLDYRRFESE 232 (673)
T ss_pred eEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccccCCccchhhHhhhhhh
Confidence 9999999999964445667888888998876211 1122221111 000000 0111111 0000 012222222
Q ss_pred C----Cceeeecccccc-cccCCCCCcCC-HHHHHHHHHHHHHhCCeeeeeeEeeccCCCC------CCCCCC---C---
Q 003490 247 K----PTIWTEAWSGWF-TEFGGPIHQRP-VQDLAFAAARFIQKGGSFINYYMYHGGTNFG------RSAGGP---F--- 308 (816)
Q Consensus 247 ~----P~~~tE~w~Gwf-~~wG~~~~~r~-~~d~~~~~~~~l~~g~s~~n~YM~hGGTNfG------~~~G~~---~--- 308 (816)
+ +....|.|-+|| +.|..+.-... .+--++.+++.|....+ -||||||+|++|+ +.+|+. +
T Consensus 233 ~~~~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~m 311 (673)
T COG1874 233 QILEFVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWLM 311 (673)
T ss_pred hhHHHHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceeec
Confidence 2 556677788888 77776655444 44446667777777666 6999999999999 666653 2
Q ss_pred ----ccccCCCCCCCCcCCCCC
Q 003490 309 ----ITTSYDYDAPIDEYGLIR 326 (816)
Q Consensus 309 ----~~TSYDYdAPl~E~G~~~ 326 (816)
..|+|++++.+.+.|..+
T Consensus 312 e~~P~~vn~~~~n~~~~~G~~~ 333 (673)
T COG1874 312 EQLPSVVNWALYNKLKRPGALR 333 (673)
T ss_pred cCCcchhhhhhccCCCCCcccc
Confidence 479999999999999854
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.79 E-value=9.4e-19 Score=195.72 Aligned_cols=262 Identities=21% Similarity=0.291 Sum_probs=159.0
Q ss_pred eeCCCCCHhhHHHHHHHHHHCCCCEEEe-ceeccccCCCCceeeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCC
Q 003490 49 IHYPRSTPDMWEDLIQKAKDGGLDVIET-YVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFG 127 (816)
Q Consensus 49 ~Hy~R~~~~~W~d~l~k~Ka~GlNtI~t-yvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vilR~GPYicaEw~~G 127 (816)
+++..+|++.|+++|++||++|+|+|++ .+.|+..||+||+|||+ .|+++|++|+++||+|||+.. .+
T Consensus 2 y~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~~ 70 (374)
T PF02449_consen 2 YYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------TA 70 (374)
T ss_dssp --GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------TT
T ss_pred CCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------cc
Confidence 4566789999999999999999999996 67899999999999999 799999999999999999974 67
Q ss_pred CCCccccc-cCCeEe----------------ecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEeccccccccccc
Q 003490 128 GFPVWLKY-VPGISF----------------RTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSK 190 (816)
Q Consensus 128 GlP~WL~~-~p~i~~----------------Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QiENEyg~~~~ 190 (816)
..|.||.+ .|++.. ..++|.|++++++++++|+++++++| .||++||+||++...+
T Consensus 71 ~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p-------~vi~~~i~NE~~~~~~ 143 (374)
T PF02449_consen 71 APPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHP-------AVIGWQIDNEPGYHRC 143 (374)
T ss_dssp TS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTT-------TEEEEEECCSTTCTS-
T ss_pred ccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccc-------eEEEEEeccccCcCcC
Confidence 79999974 466532 13468899999999999999888544 8999999999987422
Q ss_pred ccC-cccHHHHHHHHHHHHH-------cCC-------------CcceeecCCC---------------------------
Q 003490 191 LLG-AAGHNYMTWAAKMAVE-------MGT-------------GVPWVMCKEE--------------------------- 222 (816)
Q Consensus 191 ~~~-~~~~~Y~~~l~~~~~~-------~g~-------------~vp~~~~~~~--------------------------- 222 (816)
|. .+.++|.+||++.+.. -|. ..|.-+....
T Consensus 144 -~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~i 222 (374)
T PF02449_consen 144 -YSPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADII 222 (374)
T ss_dssp --SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 3667888888888741 111 1132222100
Q ss_pred --CCCCccccCCC--CC------------ccC-----CC-------C---------------CCCCCCCceeeecccccc
Q 003490 223 --DAPDPVINSCN--GF------------YCD-----AF-------T---------------PNQPYKPTIWTEAWSGWF 259 (816)
Q Consensus 223 --~~~~~vi~t~n--g~------------~~~-----~~-------~---------------~~~p~~P~~~tE~w~Gwf 259 (816)
..|+- .-+.| +. .+| .+ . ...+.+|.+++|..+| -
T Consensus 223 r~~~p~~-~vt~n~~~~~~~~~d~~~~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g-~ 300 (374)
T PF02449_consen 223 REYDPDH-PVTTNFMGSWFNGIDYFKWAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPG-P 300 (374)
T ss_dssp HHHSTT--EEE-EE-TT---SS-HHHHGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S--
T ss_pred HHhCCCc-eEEeCccccccCcCCHHHHHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCC-C
Confidence 00110 00111 00 000 00 0 1146899999999998 5
Q ss_pred cccCCCCCcCCHHHHHHHHHHHHHhCCeeeeeeEeeccCCCCCCCCCCCccccCCCCCCCCcCC-CCCchhHHHHHHHHH
Q 003490 260 TEFGGPIHQRPVQDLAFAAARFIQKGGSFINYYMYHGGTNFGRSAGGPFITTSYDYDAPIDEYG-LIRQPKYGHLKELHR 338 (816)
Q Consensus 260 ~~wG~~~~~r~~~d~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~TSYDYdAPl~E~G-~~~~pKy~~lr~l~~ 338 (816)
..|+.......++.+....-.-++.|+..+.|+-+ ..--+|.=.. ..+.|+-+| .+ +++|.+++++.+
T Consensus 301 ~~~~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E~~---------~~g~~~~dg~~~-~~~~~e~~~~~~ 369 (374)
T PF02449_consen 301 VNWRPYNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAEQF---------HGGLVDHDGREP-TRRYREVAQLGR 369 (374)
T ss_dssp -SSSSS-----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTTTT---------S--SB-TTS--B--HHHHHHHHHHH
T ss_pred CCCccCCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCchhh---------hcccCCccCCCC-CcHHHHHHHHHH
Confidence 66765555555566666666678999998887765 3223332210 135788889 55 799999999988
Q ss_pred HHHh
Q 003490 339 AIKM 342 (816)
Q Consensus 339 ~i~~ 342 (816)
.|+.
T Consensus 370 ~l~~ 373 (374)
T PF02449_consen 370 ELKK 373 (374)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 7763
No 6
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.20 E-value=7.3e-10 Score=120.47 Aligned_cols=191 Identities=19% Similarity=0.296 Sum_probs=125.1
Q ss_pred EEEecCeEEECCEEeEEEEEEeeCCC------CCHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHH
Q 003490 28 VTYDRKALLINGQRRILFSGSIHYPR------STPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRF 101 (816)
Q Consensus 28 v~~d~~~~~idG~~~~l~sG~~Hy~R------~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~f 101 (816)
|.+.++.|+|||||++|-+...|... .+++.|..+|++||++|+|+|++ .|-|. -.+|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~-----~h~p~-----------~~~~ 64 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT-----HHYPP-----------SPRF 64 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE-----TTS-------------SHHH
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc-----ccccC-----------cHHH
Confidence 57889999999999999999999633 48899999999999999999999 66664 2789
Q ss_pred HHHHHHcCCEEEEecCcee-eeecCCCCCCccccccCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEec
Q 003490 102 IKTIQKAGLYAHLRIGPYV-CAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQ 180 (816)
Q Consensus 102 i~la~~~GL~vilR~GPYi-caEw~~GGlP~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~Q 180 (816)
+++|.++||.|+..+ |.. ++.|..-|. ......|+.+.+.+.+-+++++.+.+.|| .||+|=
T Consensus 65 ~~~cD~~GilV~~e~-~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~NHP-------SIi~W~ 127 (298)
T PF02836_consen 65 YDLCDELGILVWQEI-PLEGHGSWQDFGN---------CNYDADDPEFRENAEQELREMVRRDRNHP-------SIIMWS 127 (298)
T ss_dssp HHHHHHHT-EEEEE--S-BSCTSSSSTSC---------TSCTTTSGGHHHHHHHHHHHHHHHHTT-T-------TEEEEE
T ss_pred HHHHhhcCCEEEEec-cccccCccccCCc---------cccCCCCHHHHHHHHHHHHHHHHcCcCcC-------chheee
Confidence 999999999999775 211 112221110 12456789999988888888888888665 999999
Q ss_pred ccccccccccccCcccHHHHHHHHHHHHHcCCCcceeecCCC--CCCCccc-cCCCCCcc-----CCCC----C--CCCC
Q 003490 181 IENEYGAQSKLLGAAGHNYMTWAAKMAVEMGTGVPWVMCKEE--DAPDPVI-NSCNGFYC-----DAFT----P--NQPY 246 (816)
Q Consensus 181 iENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~vp~~~~~~~--~~~~~vi-~t~ng~~~-----~~~~----~--~~p~ 246 (816)
+-||-. ...+++.|.+++++..-+-|....... ...+.+. +...+.+- +.+. . ..++
T Consensus 128 ~gNE~~---------~~~~~~~l~~~~k~~DptRpv~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 198 (298)
T PF02836_consen 128 LGNESD---------YREFLKELYDLVKKLDPTRPVTYASNGWDPYVDDIIFDIYSGWYNGYGDPEDFEKYLEDWYKYPD 198 (298)
T ss_dssp EEESSH---------HHHHHHHHHHHHHHH-TTSEEEEETGTSGGSTSSCEECSETTTSSSCCHHHHHHHHHHHHHHHCT
T ss_pred cCccCc---------cccchhHHHHHHHhcCCCCceeecccccccccccccccccccccCCcccHHHHHHHHHhccccCC
Confidence 999982 356788899999998877776543331 0111111 11011110 1111 1 3588
Q ss_pred CCceeeeccccccc
Q 003490 247 KPTIWTEAWSGWFT 260 (816)
Q Consensus 247 ~P~~~tE~w~Gwf~ 260 (816)
+|.+.+||....+.
T Consensus 199 kP~i~sEyg~~~~~ 212 (298)
T PF02836_consen 199 KPIIISEYGADAYN 212 (298)
T ss_dssp S-EEEEEESEBBSS
T ss_pred CCeEehhccccccc
Confidence 99999999765554
No 7
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.03 E-value=3.4e-08 Score=117.66 Aligned_cols=159 Identities=15% Similarity=0.081 Sum_probs=113.3
Q ss_pred eeEEEecCeEEECCEEeEEEEEEeeCCC------CCHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHH
Q 003490 26 CSVTYDRKALLINGQRRILFSGSIHYPR------STPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLV 99 (816)
Q Consensus 26 ~~v~~d~~~~~idG~~~~l~sG~~Hy~R------~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~ 99 (816)
.+|+++++.|+|||+|+++-+...|... ++++.|..+|+.||++|+|+|++ .|-|. =.
T Consensus 276 R~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~-----sh~p~-----------~~ 339 (604)
T PRK10150 276 RSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRT-----SHYPY-----------SE 339 (604)
T ss_pred EEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEe-----ccCCC-----------CH
Confidence 5588899999999999999999888532 57888999999999999999999 46553 26
Q ss_pred HHHHHHHHcCCEEEEecCceeeeecCCCCCCcccc-------c-cCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccc
Q 003490 100 RFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLK-------Y-VPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFES 171 (816)
Q Consensus 100 ~fi~la~~~GL~vilR~GPYicaEw~~GGlP~WL~-------~-~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~ 171 (816)
+|+++|.++||+|+-... . -|+..|+. + .+....-..+|.+.++.++-+++++.+.+.
T Consensus 340 ~~~~~cD~~GllV~~E~p-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~N------ 405 (604)
T PRK10150 340 EMLDLADRHGIVVIDETP-A-------VGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRELIARDKN------ 405 (604)
T ss_pred HHHHHHHhcCcEEEEecc-c-------ccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhccC------
Confidence 899999999999997742 1 12222221 1 111111234566767666666666666554
Q ss_pred cCCceEEecccccccccccccCcccHHHHHHHHHHHHHcCCCcceeec
Q 003490 172 QGGPIILSQIENEYGAQSKLLGAAGHNYMTWAAKMAVEMGTGVPWVMC 219 (816)
Q Consensus 172 ~gGpII~~QiENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~vp~~~~ 219 (816)
...||||-|-||-... ......|++.+.+.++++.-+-|...+
T Consensus 406 -HPSIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt~~ 448 (604)
T PRK10150 406 -HPSVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVTCV 448 (604)
T ss_pred -CceEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceEEE
Confidence 4599999999996531 123457888888999988877775544
No 8
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.88 E-value=4.2e-09 Score=98.83 Aligned_cols=71 Identities=28% Similarity=0.691 Sum_probs=51.2
Q ss_pred CCCceEEEEEEeCCCCCCCeEEe---e--CCCccEEEEECCeeeeeeeeccccCCCCCcccccCcCCCcccCCCCCccee
Q 003490 618 QQPLMWHKAYFNAPEGDEPLALD---M--EGMGKGQIWINGQSVGRYWTAYAKGDCNGCNYVGGYRPTKCQLGCGQPTQR 692 (816)
Q Consensus 618 ~~~~twYk~~F~~p~g~dp~~Ld---l--~g~gKG~~wVNG~niGRYW~~~~~g~~~~c~y~G~y~~~kc~~~cg~Pqqt 692 (816)
..+..|||++|..-. .| +.|. . ....+++|||||++|||||+. +| ||++
T Consensus 33 ~~g~~~Yrg~F~~~~-~~-~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~-----------~g-------------~q~t 86 (111)
T PF13364_consen 33 HAGYLWYRGTFTGTG-QD-TSLTPLNIQGGNAFRASVWVNGWFLGSYWPG-----------IG-------------PQTT 86 (111)
T ss_dssp SSCEEEEEEEEETTT-EE-EEEE-EEECSSTTEEEEEEETTEEEEEEETT-----------TE-------------CCEE
T ss_pred CCCCEEEEEEEeCCC-cc-eeEEEEeccCCCceEEEEEECCEEeeeecCC-----------CC-------------ccEE
Confidence 346899999996422 22 3343 3 356889999999999999964 35 9999
Q ss_pred eeecCcccccCCcceEEEE-EecC
Q 003490 693 WYHVPRSWLKPTQNFLVVF-EELG 715 (816)
Q Consensus 693 lYhVP~~~Lk~g~N~LVlf-Ee~g 715 (816)
++ ||..+|+.++|.|+++ +.+|
T Consensus 87 f~-~p~~il~~~n~v~~vl~~~~g 109 (111)
T PF13364_consen 87 FS-VPAGILKYGNNVLVVLWDNMG 109 (111)
T ss_dssp EE-E-BTTBTTCEEEEEEEEE-ST
T ss_pred EE-eCceeecCCCEEEEEEEeCCC
Confidence 99 9999999886666554 4443
No 9
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=98.75 E-value=2.2e-07 Score=116.52 Aligned_cols=260 Identities=18% Similarity=0.158 Sum_probs=151.2
Q ss_pred eeEEEecCeEEECCEEeEEEEEEeeCCC------CCHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHH
Q 003490 26 CSVTYDRKALLINGQRRILFSGSIHYPR------STPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLV 99 (816)
Q Consensus 26 ~~v~~d~~~~~idG~~~~l~sG~~Hy~R------~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~ 99 (816)
.+|+++++.|+|||+|+++-+...|... ++++.|+.+|+.||++|+|+|++ .|-|. =.
T Consensus 318 R~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~-----sHyP~-----------~~ 381 (1021)
T PRK10340 318 RDIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRT-----AHYPN-----------DP 381 (1021)
T ss_pred EEEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCC-----------CH
Confidence 4578889999999999999999988421 47899999999999999999999 35554 26
Q ss_pred HHHHHHHHcCCEEEEecCceeeeecCCCCCCccccccCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEe
Q 003490 100 RFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILS 179 (816)
Q Consensus 100 ~fi~la~~~GL~vilR~GPYicaEw~~GGlP~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~ 179 (816)
+|+++|.|+||+|+-.. |..|.-|... .+...-+++|.+.++..+=+++++.+.+ |...||||
T Consensus 382 ~fydlcDe~GllV~dE~-~~e~~g~~~~---------~~~~~~~~~p~~~~~~~~~~~~mV~Rdr-------NHPSIi~W 444 (1021)
T PRK10340 382 RFYELCDIYGLFVMAET-DVESHGFANV---------GDISRITDDPQWEKVYVDRIVRHIHAQK-------NHPSIIIW 444 (1021)
T ss_pred HHHHHHHHCCCEEEECC-cccccCcccc---------cccccccCCHHHHHHHHHHHHHHHHhCC-------CCCEEEEE
Confidence 89999999999999875 3333222110 0111124667676554444455555554 55699999
Q ss_pred cccccccccccccCcccHHHHHHHHHHHHHcCCCcceeecCCCCCC--CccccCCCCCc--cCCCCCCCCCCCceeeecc
Q 003490 180 QIENEYGAQSKLLGAAGHNYMTWAAKMAVEMGTGVPWVMCKEEDAP--DPVINSCNGFY--CDAFTPNQPYKPTIWTEAW 255 (816)
Q Consensus 180 QiENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~vp~~~~~~~~~~--~~vi~t~ng~~--~~~~~~~~p~~P~~~tE~w 255 (816)
=+-||-+. + . .++.+.+.++++.-.-|+ +..+.... .+|+...-+.. +..+....+++|.+.+||-
T Consensus 445 slGNE~~~-----g---~-~~~~~~~~~k~~DptR~v-~~~~~~~~~~~Dv~~~~Y~~~~~~~~~~~~~~~kP~i~~Ey~ 514 (1021)
T PRK10340 445 SLGNESGY-----G---C-NIRAMYHAAKALDDTRLV-HYEEDRDAEVVDVISTMYTRVELMNEFGEYPHPKPRILCEYA 514 (1021)
T ss_pred ECccCccc-----c---H-HHHHHHHHHHHhCCCceE-EeCCCcCccccceeccccCCHHHHHHHHhCCCCCcEEEEchH
Confidence 99999753 2 1 246677778887766654 33331111 12221100000 1122233457999999983
Q ss_pred cccccccCCCCCcCCHHHHHHHHHHH--HHhCCee-----e---------eeeEeeccCCCCCCCCCCCccccCCCCCCC
Q 003490 256 SGWFTEFGGPIHQRPVQDLAFAAARF--IQKGGSF-----I---------NYYMYHGGTNFGRSAGGPFITTSYDYDAPI 319 (816)
Q Consensus 256 ~Gwf~~wG~~~~~r~~~d~~~~~~~~--l~~g~s~-----~---------n~YM~hGGTNfG~~~G~~~~~TSYDYdAPl 319 (816)
-+ .|... ...++.-..+.+. + .|+-+ + .-|+.+|| .||-+. -..++--+.-+
T Consensus 515 ha----mgn~~--g~~~~yw~~~~~~p~l-~GgfiW~~~D~~~~~~~~~G~~~~~ygG-d~g~~p----~~~~f~~~Glv 582 (1021)
T PRK10340 515 HA----MGNGP--GGLTEYQNVFYKHDCI-QGHYVWEWCDHGIQAQDDNGNVWYKYGG-DYGDYP----NNYNFCIDGLI 582 (1021)
T ss_pred hc----cCCCC--CCHHHHHHHHHhCCce-eEEeeeecCcccccccCCCCCEEEEECC-CCCCCC----CCcCcccceeE
Confidence 21 22110 0123222222110 0 01100 0 12344555 355321 11223334678
Q ss_pred CcCCCCCchhHHHHHHHHHHHH
Q 003490 320 DEYGLIRQPKYGHLKELHRAIK 341 (816)
Q Consensus 320 ~E~G~~~~pKy~~lr~l~~~i~ 341 (816)
+-++.+ .|.+...|.+.+-++
T Consensus 583 ~~dr~p-~p~~~e~k~~~~pv~ 603 (1021)
T PRK10340 583 YPDQTP-GPGLKEYKQVIAPVK 603 (1021)
T ss_pred CCCCCC-ChhHHHHHHhcceEE
Confidence 888988 699999998865443
No 10
>PF02140 Gal_Lectin: Galactose binding lectin domain; InterPro: IPR000922 The D-galactoside binding lectin purified from sea urchin (Anthocidaris crassispina) eggs exists as a disulphide-linked homodimer of two subunits; the dimeric form is essential for hemagglutination activity []. The sea urchin egg lectin (SUEL) forms a new class of lectins. Although SUEL was first isolated as a D-galactoside binding lectin, it was latter shown that it bind to L-rhamnose preferentially [, ]. L-rhamnose and D-galactose share the same hydroxyl group orientation at C2 and C4 of the pyranose ring structure. A cysteine-rich domain homologous to the SUEL protein has been identified in the following proteins [, , ]: Plant beta-galactosidases (3.2.1.23 from EC) (lactases). Mammalian latrophilin, the calcium independent receptor of alpha-latrotoxin (CIRL). The galactose-binding lectin domain is not required for alpha-latratoxin binding []. Human lectomedin-1. Rhamnose-binding lectin (SAL) from catfish (Silurus asotus, Namazu) eggs. This protein is composed of three tandem repeat domains homologous to the SUEL lectin domain. All cysteine positions of each domain are completely conserved []. The hypothetical B0457.1, F32A7.3A and F32A7.3B proteins from Caenorhabditis elegans. The human KIAA0821 protein. ; GO: 0005529 sugar binding; PDB: 2JXA_A 2JX9_A 2ZX2_A 2ZX3_B 2ZX0_B 2ZX1_B 2ZX4_B.
Probab=98.73 E-value=6.8e-09 Score=91.52 Aligned_cols=52 Identities=31% Similarity=0.519 Sum_probs=41.9
Q ss_pred eeCCCCCeEeEEeeeecCCCcc-CCCCcCc---ccccCCchHHHHHhhcCCCCcccc
Q 003490 763 LRCSPGHTISSIKFASFGTPLG-TCGSYQQ---GPCHSPTSYDILEKVFITALISSV 815 (816)
Q Consensus 763 L~C~~g~~Is~I~fAs~G~p~G-~Cg~~~~---g~C~~~~s~~iv~~~C~G~~~C~v 815 (816)
|+|++|++|. |.+|+|||+.. .|++... .+|++++++++|+++|.||++|+|
T Consensus 1 L~C~~g~~I~-I~~A~YGR~~~~~C~~~~~~~~~~C~~~~~~~~v~~~C~g~~~C~v 56 (80)
T PF02140_consen 1 LSCPPGKVIS-IDSAFYGRTSSSICPSSSSGSNTNCSAPDALSIVKERCNGKQSCSV 56 (80)
T ss_dssp EE-STTEEEE-EEEEEEEBSSSSTT--GGGCS-TTB--TTHHHHHHHHHTTBSEEEE
T ss_pred CCCcCCCEEE-EEEeecCCCCCCCCcCCCcCCCCccccccccchhHHhCCCCCccEE
Confidence 7999997777 99999999976 8985444 369999999999999999999997
No 11
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.73 E-value=1.5e-07 Score=99.95 Aligned_cols=159 Identities=18% Similarity=0.238 Sum_probs=107.8
Q ss_pred CCEEeEEEEEEeeCCCCCHhhHHHHHHHHHHCCCCEEEeceeccccC-CCCce-eeecccchHHHHHHHHHHcCCEEEEe
Q 003490 38 NGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHE-PSPGN-YNFEGRYDLVRFIKTIQKAGLYAHLR 115 (816)
Q Consensus 38 dG~~~~l~sG~~Hy~R~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hE-p~~G~-ydF~g~~dl~~fi~la~~~GL~vilR 115 (816)
+|+++.+.+-+.|+... ..-++.+++||++|+|+|++.|.|...+ |.++. ++=+.-..|+++|+.|+++||+|||.
T Consensus 4 ~G~~v~~~G~n~~w~~~--~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild 81 (281)
T PF00150_consen 4 NGKPVNWRGFNTHWYNP--SITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILD 81 (281)
T ss_dssp TSEBEEEEEEEETTSGG--GSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCeEEeeeeecccCCC--CCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 79999999999994322 2677899999999999999999996555 67664 66666679999999999999999987
Q ss_pred cCceeeeecCCCCCCccccccCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEeccccccccccccc--C
Q 003490 116 IGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLL--G 193 (816)
Q Consensus 116 ~GPYicaEw~~GGlP~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QiENEyg~~~~~~--~ 193 (816)
+= . .|.|....... ...+...+...++.+.|+.++|. ..+|++++|=||........ .
T Consensus 82 ~h----~------~~~w~~~~~~~---~~~~~~~~~~~~~~~~la~~y~~-------~~~v~~~el~NEP~~~~~~~~w~ 141 (281)
T PF00150_consen 82 LH----N------APGWANGGDGY---GNNDTAQAWFKSFWRALAKRYKD-------NPPVVGWELWNEPNGGNDDANWN 141 (281)
T ss_dssp EE----E------STTCSSSTSTT---TTHHHHHHHHHHHHHHHHHHHTT-------TTTTEEEESSSSGCSTTSTTTTS
T ss_pred ec----c------Ccccccccccc---ccchhhHHHHHhhhhhhccccCC-------CCcEEEEEecCCccccCCccccc
Confidence 52 1 16774322111 12223344445566666666653 34799999999997642110 0
Q ss_pred ----cccHHHHHHHHHHHHHcCCCcceee
Q 003490 194 ----AAGHNYMTWAAKMAVEMGTGVPWVM 218 (816)
Q Consensus 194 ----~~~~~Y~~~l~~~~~~~g~~vp~~~ 218 (816)
..-.++++.+.+.+|+.+.+.+++.
T Consensus 142 ~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~ 170 (281)
T PF00150_consen 142 AQNPADWQDWYQRAIDAIRAADPNHLIIV 170 (281)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTTSSSEEEE
T ss_pred cccchhhhhHHHHHHHHHHhcCCcceeec
Confidence 1113455666677778887766554
No 12
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=98.73 E-value=2.7e-07 Score=115.55 Aligned_cols=149 Identities=17% Similarity=0.166 Sum_probs=107.0
Q ss_pred eeEEEecCeEEECCEEeEEEEEEeeCC------CCCHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHH
Q 003490 26 CSVTYDRKALLINGQRRILFSGSIHYP------RSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLV 99 (816)
Q Consensus 26 ~~v~~d~~~~~idG~~~~l~sG~~Hy~------R~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~ 99 (816)
.+|+++++.|+|||+|+++-+...|-. +++++.++.+|+.||++|+|+|++ .|-|. =.
T Consensus 334 R~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~-----sHyP~-----------~p 397 (1027)
T PRK09525 334 RKVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC-----SHYPN-----------HP 397 (1027)
T ss_pred EEEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCC-----------CH
Confidence 457788899999999999999999842 368999999999999999999999 35553 26
Q ss_pred HHHHHHHHcCCEEEEecCceeeeecCCCCCCccccccCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEe
Q 003490 100 RFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILS 179 (816)
Q Consensus 100 ~fi~la~~~GL~vilR~GPYicaEw~~GGlP~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~ 179 (816)
+|+++|.|+||+|+-... . | ..|-.|.. .-.+||.|.+++.+=+++++.+.+ |...||||
T Consensus 398 ~fydlcDe~GilV~dE~~-~---e-~hg~~~~~--------~~~~dp~~~~~~~~~~~~mV~Rdr-------NHPSIi~W 457 (1027)
T PRK09525 398 LWYELCDRYGLYVVDEAN-I---E-THGMVPMN--------RLSDDPRWLPAMSERVTRMVQRDR-------NHPSIIIW 457 (1027)
T ss_pred HHHHHHHHcCCEEEEecC-c---c-ccCCcccc--------CCCCCHHHHHHHHHHHHHHHHhCC-------CCCEEEEE
Confidence 899999999999997742 1 1 11111210 014577787766555555555555 44599999
Q ss_pred cccccccccccccCcccHHHHHHHHHHHHHcCCCcceeec
Q 003490 180 QIENEYGAQSKLLGAAGHNYMTWAAKMAVEMGTGVPWVMC 219 (816)
Q Consensus 180 QiENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~vp~~~~ 219 (816)
=+-||-+. + .....+.+.++++.-.-|....
T Consensus 458 SlgNE~~~-----g----~~~~~l~~~~k~~DptRpV~y~ 488 (1027)
T PRK09525 458 SLGNESGH-----G----ANHDALYRWIKSNDPSRPVQYE 488 (1027)
T ss_pred eCccCCCc-----C----hhHHHHHHHHHhhCCCCcEEEC
Confidence 99999653 2 1245566777777766665554
No 13
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.68 E-value=8.9e-08 Score=89.89 Aligned_cols=85 Identities=19% Similarity=0.263 Sum_probs=60.1
Q ss_pred chhhccCCCCCccEEEEEEEecCCCCcccccCCCCce-EEeC-CcceEEEEEECCEEEEEEEcccccceeEEEeeee-cc
Q 003490 458 LLEQINVTRDASDYLWYITSVDIGSSESFLHGGELPT-LIVQ-STGHALHIFINGQLSGSAFGTREARRFMYTGKVN-LR 534 (816)
Q Consensus 458 ~~Eql~~t~d~sgYlwY~T~i~~~~~~~~~~~g~~~~-L~v~-~~~d~~~vfVNg~~vG~~~~~~~~~~~~~~~~i~-l~ 534 (816)
+.+..+..++.+|++|||++|.....+. ... |.+. +.+++++|||||+++|+..+.. ..+.+|+.|.. |+
T Consensus 23 ~~l~~~~~g~~~g~~~Yrg~F~~~~~~~------~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~-g~q~tf~~p~~il~ 95 (111)
T PF13364_consen 23 PVLYASDYGFHAGYLWYRGTFTGTGQDT------SLTPLNIQGGNAFRASVWVNGWFLGSYWPGI-GPQTTFSVPAGILK 95 (111)
T ss_dssp SSTCCGCGTSSSCEEEEEEEEETTTEEE------EEE-EEECSSTTEEEEEEETTEEEEEEETTT-ECCEEEEE-BTTBT
T ss_pred ceeccCccccCCCCEEEEEEEeCCCcce------eEEEEeccCCCceEEEEEECCEEeeeecCCC-CccEEEEeCceeec
Confidence 3566677788999999999997543331 123 4554 7899999999999999988322 22345555543 56
Q ss_pred CCCcEEEEEEecCCc
Q 003490 535 AGRNKIALLSVAVGL 549 (816)
Q Consensus 535 ~G~n~L~ILven~Gr 549 (816)
.+.|.|.+|+.+||+
T Consensus 96 ~~n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 96 YGNNVLVVLWDNMGH 110 (111)
T ss_dssp TCEEEEEEEEE-STT
T ss_pred CCCEEEEEEEeCCCC
Confidence 677888999999995
No 14
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=98.62 E-value=7e-07 Score=108.51 Aligned_cols=120 Identities=21% Similarity=0.276 Sum_probs=98.3
Q ss_pred eeEEEecCeEEECCEEeEEEEEEeeCCC-----C-CHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHH
Q 003490 26 CSVTYDRKALLINGQRRILFSGSIHYPR-----S-TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLV 99 (816)
Q Consensus 26 ~~v~~d~~~~~idG~~~~l~sG~~Hy~R-----~-~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~ 99 (816)
..|++++..|.|||||+++-+..-|.+- . ..+.-+++|++||++|+|+|+|- |-|+ =.
T Consensus 284 R~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~-----------~~ 347 (808)
T COG3250 284 RTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTS-----HYPN-----------SE 347 (808)
T ss_pred EEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEec-----CCCC-----------CH
Confidence 5689999999999999999999999643 3 44547889999999999999993 7776 38
Q ss_pred HHHHHHHHcCCEEEEecCceeeeecCCCCCCccccccCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEe
Q 003490 100 RFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILS 179 (816)
Q Consensus 100 ~fi~la~~~GL~vilR~GPYicaEw~~GGlP~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~ 179 (816)
+|++||.++||+||-.+ ..||.. +| +|+.|++.+..=+++++++.|.+| .||||
T Consensus 348 ~~ydLcDelGllV~~Ea----~~~~~~--~~-------------~~~~~~k~~~~~i~~mver~knHP-------SIiiW 401 (808)
T COG3250 348 EFYDLCDELGLLVIDEA----MIETHG--MP-------------DDPEWRKEVSEEVRRMVERDRNHP-------SIIIW 401 (808)
T ss_pred HHHHHHHHhCcEEEEec----chhhcC--CC-------------CCcchhHHHHHHHHHHHHhccCCC-------cEEEE
Confidence 89999999999999884 223322 22 788899988888888888877555 89999
Q ss_pred cccccccc
Q 003490 180 QIENEYGA 187 (816)
Q Consensus 180 QiENEyg~ 187 (816)
=+-||-|.
T Consensus 402 s~gNE~~~ 409 (808)
T COG3250 402 SLGNESGH 409 (808)
T ss_pred eccccccC
Confidence 99999774
No 15
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=98.17 E-value=8.3e-06 Score=80.89 Aligned_cols=100 Identities=24% Similarity=0.284 Sum_probs=71.1
Q ss_pred CCCCccEEEEEEEecCCCCcccccCCCCceEEeCCcceEEEEEECCEEEEEEEcccccceeEEEeeeeccCCC-cEEEEE
Q 003490 465 TRDASDYLWYITSVDIGSSESFLHGGELPTLIVQSTGHALHIFINGQLSGSAFGTREARRFMYTGKVNLRAGR-NKIALL 543 (816)
Q Consensus 465 t~d~sgYlwY~T~i~~~~~~~~~~~g~~~~L~v~~~~d~~~vfVNg~~vG~~~~~~~~~~~~~~~~i~l~~G~-n~L~IL 543 (816)
.....++.||+++|.++.+. .+....|.+.++.+.+.|||||+++|...+.. ..+.++++-.|+.|. |+|+|.
T Consensus 63 ~~~~~~~~wYr~~f~lp~~~----~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~--~~~~~dIt~~l~~g~~N~l~V~ 136 (167)
T PF02837_consen 63 LWDYSGYAWYRRTFTLPADW----KGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY--TPFEFDITDYLKPGEENTLAVR 136 (167)
T ss_dssp TSTCCSEEEEEEEEEESGGG----TTSEEEEEESEEESEEEEEETTEEEEEEESTT--S-EEEECGGGSSSEEEEEEEEE
T ss_pred ccccCceEEEEEEEEeCchh----cCceEEEEeccceEeeEEEeCCeEEeeeCCCc--CCeEEeChhhccCCCCEEEEEE
Confidence 34578999999999886432 24567899999999999999999999987543 345555554578887 999999
Q ss_pred EecCCccccccCC-CcccccccccEEEe
Q 003490 544 SVAVGLPNVGGHY-ETWNTGILGPVALH 570 (816)
Q Consensus 544 ven~Gr~NyG~~~-e~~~kGI~G~V~l~ 570 (816)
+.+.....+-+.+ .....||.++|.|-
T Consensus 137 v~~~~~~~~~~~~~~~~~~GI~r~V~L~ 164 (167)
T PF02837_consen 137 VDNWPDGSTIPGFDYFNYAGIWRPVWLE 164 (167)
T ss_dssp EESSSGGGCGBSSSEEE--EEESEEEEE
T ss_pred EeecCCCceeecCcCCccCccccEEEEE
Confidence 9865543321111 13568999999873
No 16
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.95 E-value=2.9e-05 Score=83.00 Aligned_cols=116 Identities=22% Similarity=0.374 Sum_probs=88.0
Q ss_pred ccccCCCCceeeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccccccCCeEeecCChhHHHHHHHHHHHH
Q 003490 80 WNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKI 159 (816)
Q Consensus 80 Wn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vilR~GPYicaEw~~GGlP~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i 159 (816)
|...||++|+|||+ .++++++.|+++||.| |..+-+ |.. ..|.|+...+ .+..++++++|++.+
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v--~gH~l~---W~~-~~P~W~~~~~-------~~~~~~~~~~~i~~v 66 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKV--RGHTLV---WHS-QTPDWVFNLS-------KETLLARLENHIKTV 66 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEE--EEEEEe---ecc-cCCHhhhcCC-------HHHHHHHHHHHHHHH
Confidence 88999999999999 8999999999999998 433322 543 6899997533 345678888888888
Q ss_pred HHHHHhcccccccCCceEEeccccccccccc------cc-CcccHHHHHHHHHHHHHcCCCcceeecC
Q 003490 160 VNLMKSENLFESQGGPIILSQIENEYGAQSK------LL-GAAGHNYMTWAAKMAVEMGTGVPWVMCK 220 (816)
Q Consensus 160 ~~~l~~~~l~~~~gGpII~~QiENEyg~~~~------~~-~~~~~~Y~~~l~~~~~~~g~~vp~~~~~ 220 (816)
+.+++ |.|..++|=||--+... .+ ...+.+|+...-+.+++..-++.++.++
T Consensus 67 ~~ry~---------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Nd 125 (254)
T smart00633 67 VGRYK---------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYND 125 (254)
T ss_pred HHHhC---------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEec
Confidence 88776 56899999999533210 11 1234689999999999988888888764
No 17
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=97.83 E-value=0.00031 Score=76.66 Aligned_cols=152 Identities=13% Similarity=0.175 Sum_probs=86.2
Q ss_pred ceeEEEecCeEE--ECCEEeEEEEEEeeCCC-----------CCHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceee
Q 003490 25 HCSVTYDRKALL--INGQRRILFSGSIHYPR-----------STPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYN 91 (816)
Q Consensus 25 ~~~v~~d~~~~~--idG~~~~l~sG~~Hy~R-----------~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~yd 91 (816)
-..|+..++.|+ .+|++|+|.+-.+.+.- ..++.|..++..||++|+|||++|-.
T Consensus 8 ~~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~v------------ 75 (314)
T PF03198_consen 8 VPPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSV------------ 75 (314)
T ss_dssp S--EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES--------------
T ss_pred CCCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEe------------
Confidence 366899999999 79999999877666532 35789999999999999999999732
Q ss_pred ecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccccccCCeEeecCCh--hHHHHHHHHHHHHHHHHHhcccc
Q 003490 92 FEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNE--PFKRAMQGFTEKIVNLMKSENLF 169 (816)
Q Consensus 92 F~g~~dl~~fi~la~~~GL~vilR~GPYicaEw~~GGlP~WL~~~p~i~~Rt~d~--~y~~~~~~~~~~i~~~l~~~~l~ 169 (816)
.-..|=++++++.+++|+||||..+. |+..+-.++| .|-...-.-+.++++.++.++
T Consensus 76 -dp~~nHd~CM~~~~~aGIYvi~Dl~~------------------p~~sI~r~~P~~sw~~~l~~~~~~vid~fa~Y~-- 134 (314)
T PF03198_consen 76 -DPSKNHDECMSAFADAGIYVILDLNT------------------PNGSINRSDPAPSWNTDLLDRYFAVIDAFAKYD-- 134 (314)
T ss_dssp --TTS--HHHHHHHHHTT-EEEEES-B------------------TTBS--TTS------HHHHHHHHHHHHHHTT-T--
T ss_pred -CCCCCHHHHHHHHHhCCCEEEEecCC------------------CCccccCCCCcCCCCHHHHHHHHHHHHHhccCC--
Confidence 22247799999999999999999642 3333434445 453333334455677788555
Q ss_pred cccCCceEEecccccccccccccCcccHHHH----HHHHHHHHHcCC-Ccce
Q 003490 170 ESQGGPIILSQIENEYGAQSKLLGAAGHNYM----TWAAKMAVEMGT-GVPW 216 (816)
Q Consensus 170 ~~~gGpII~~QiENEyg~~~~~~~~~~~~Y~----~~l~~~~~~~g~-~vp~ 216 (816)
+++++=+-||--+-.. ......|+ +-+++-+++.+. .+|+
T Consensus 135 -----N~LgFf~GNEVin~~~--~t~aap~vKAavRD~K~Yi~~~~~R~IPV 179 (314)
T PF03198_consen 135 -----NTLGFFAGNEVINDAS--NTNAAPYVKAAVRDMKAYIKSKGYRSIPV 179 (314)
T ss_dssp -----TEEEEEEEESSS-STT---GGGHHHHHHHHHHHHHHHHHSSS----E
T ss_pred -----ceEEEEecceeecCCC--CcccHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 8999999999864321 11233444 445555555554 4554
No 18
>PLN02161 beta-amylase
Probab=97.76 E-value=9.7e-05 Score=84.40 Aligned_cols=83 Identities=22% Similarity=0.397 Sum_probs=62.7
Q ss_pred CHhhHHHHHHHHHHCCCCEEEeceeccccCC-CCceeeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCC-----C
Q 003490 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEP-SPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFG-----G 128 (816)
Q Consensus 55 ~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp-~~G~ydF~g~~dl~~fi~la~~~GL~vilR~GPYicaEw~~G-----G 128 (816)
.++.-...|+++|++|++.|.+-|.|.+.|. .|++|||+| ..+++++++++||++.+-..=--|+- +-| -
T Consensus 115 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NvGd~~~Ip 190 (531)
T PLN02161 115 RLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCFHSNMH-LFGGKGGIS 190 (531)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccCcc
Confidence 3455677899999999999999999999998 699999996 66779999999999643321122222 112 2
Q ss_pred CCccccc----cCCeEe
Q 003490 129 FPVWLKY----VPGISF 141 (816)
Q Consensus 129 lP~WL~~----~p~i~~ 141 (816)
||.|+.+ +|+|.+
T Consensus 191 LP~WV~~~g~~~pDi~f 207 (531)
T PLN02161 191 LPLWIREIGDVNKDIYY 207 (531)
T ss_pred CCHHHHhhhccCCCceE
Confidence 8999975 577754
No 19
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.68 E-value=0.0013 Score=72.01 Aligned_cols=225 Identities=22% Similarity=0.316 Sum_probs=113.0
Q ss_pred cCeEE-ECCEEeEEEEEEeeC---CCCCHhhHHHHHHHHHHCCCCEEEecee--cccc--------CC----CCceeeec
Q 003490 32 RKALL-INGQRRILFSGSIHY---PRSTPDMWEDLIQKAKDGGLDVIETYVF--WNVH--------EP----SPGNYNFE 93 (816)
Q Consensus 32 ~~~~~-idG~~~~l~sG~~Hy---~R~~~~~W~d~l~k~Ka~GlNtI~tyvf--Wn~h--------Ep----~~G~ydF~ 93 (816)
++.|. -||+||+.++ .-.| .|...+.|+.-|+..|+.|||+|++=|+ |..+ .| .++++||+
T Consensus 2 ~r~f~~~dG~Pff~lg-dT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~ 80 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLG-DTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFT 80 (289)
T ss_dssp SSSEEETTS-B--EEE-EE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------T
T ss_pred CceEecCCCCEEeehh-HHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCC
Confidence 46676 7999999997 5555 3578899999999999999999999777 4432 12 12236776
Q ss_pred cc-----chHHHHHHHHHHcCCEEEEec---CceeeeecCCCCCCccccccCCeEeecCChhHHHHHHHHHHHHHHHHHh
Q 003490 94 GR-----YDLVRFIKTIQKAGLYAHLRI---GPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKS 165 (816)
Q Consensus 94 g~-----~dl~~fi~la~~~GL~vilR~---GPYicaEw~~GGlP~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~ 165 (816)
.- ..|++-|+.|.+.||.+.|-| +||+-.-|-.| | ..| =.+.+++|.+.|+++++.
T Consensus 81 ~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~--~------~~m--------~~e~~~~Y~~yv~~Ry~~ 144 (289)
T PF13204_consen 81 RPNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG--P------NIM--------PPENAERYGRYVVARYGA 144 (289)
T ss_dssp T----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH---------T------TSS---------HHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc--c------cCC--------CHHHHHHHHHHHHHHHhc
Confidence 43 479999999999999976543 34443444333 1 111 136788999999999996
Q ss_pred cccccccCCceEEecccccccccccccCcccHHHHHHHHHHHHHcCCCcc-eeecCCC-CCC-----Ccc--ccCC-CCC
Q 003490 166 ENLFESQGGPIILSQIENEYGAQSKLLGAAGHNYMTWAAKMAVEMGTGVP-WVMCKEE-DAP-----DPV--INSC-NGF 235 (816)
Q Consensus 166 ~~l~~~~gGpII~~QiENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~vp-~~~~~~~-~~~-----~~v--i~t~-ng~ 235 (816)
++ +|| +=|-||+ . ......++.+.+.+.+++..-.-+ .++..+. ..+ .+- +... .|.
T Consensus 145 ~~-------Nvi-W~l~gd~-~----~~~~~~~~w~~~~~~i~~~dp~~L~T~H~~~~~~~~~~~~~~~Wldf~~~Qsgh 211 (289)
T PF13204_consen 145 YP-------NVI-WILGGDY-F----DTEKTRADWDAMARGIKENDPYQLITIHPCGRTSSPDWFHDEPWLDFNMYQSGH 211 (289)
T ss_dssp -S-------SEE-EEEESSS-------TTSSHHHHHHHHHHHHHH--SS-EEEEE-BTEBTHHHHTT-TT--SEEEB--S
T ss_pred CC-------CCE-EEecCcc-C----CCCcCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCcchhhcCCCcceEEEeecCC
Confidence 64 466 5588999 1 234677788888887777643222 2222211 111 000 1111 121
Q ss_pred cc---CC-------CC-CCCCCCCceeeec-ccccccccCCCCCcCCHHHHHHHHHHHHHhCC
Q 003490 236 YC---DA-------FT-PNQPYKPTIWTEA-WSGWFTEFGGPIHQRPVQDLAFAAARFIQKGG 286 (816)
Q Consensus 236 ~~---~~-------~~-~~~p~~P~~~tE~-w~Gwf~~wG~~~~~r~~~d~~~~~~~~l~~g~ 286 (816)
.. +. +. ...|.||.+..|- |.|--..+.+.....+++|+...+=+-+-.|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa 274 (289)
T PF13204_consen 212 NRYDQDNWYYLPEEFDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA 274 (289)
T ss_dssp --TT--THHHH--HHHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT-
T ss_pred CcccchHHHHHhhhhhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC
Confidence 11 11 11 4578999999994 44443333333334577887665544455565
No 20
>PLN02801 beta-amylase
Probab=97.65 E-value=0.00039 Score=79.65 Aligned_cols=80 Identities=24% Similarity=0.549 Sum_probs=62.8
Q ss_pred CHhhHHHHHHHHHHCCCCEEEeceeccccCC-CCceeeecccchHHHHHHHHHHcCCEEE--EecCceeeeecCCC----
Q 003490 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEP-SPGNYNFEGRYDLVRFIKTIQKAGLYAH--LRIGPYVCAEWNFG---- 127 (816)
Q Consensus 55 ~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp-~~G~ydF~g~~dl~~fi~la~~~GL~vi--lR~GPYicaEw~~G---- 127 (816)
.++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| -.+++++++++||++. +.. --|+- +-|
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~ 108 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSF--HQCGG-NVGDAVN 108 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4566788999999999999999999999998 599999996 6677999999999964 543 22322 112
Q ss_pred -CCCccccc----cCCeE
Q 003490 128 -GFPVWLKY----VPGIS 140 (816)
Q Consensus 128 -GlP~WL~~----~p~i~ 140 (816)
-||.|+.+ +|+|.
T Consensus 109 IpLP~WV~~~g~~~pDi~ 126 (517)
T PLN02801 109 IPIPQWVRDVGDSDPDIF 126 (517)
T ss_pred ccCCHHHHHhhccCCCce
Confidence 38999975 57764
No 21
>PLN02705 beta-amylase
Probab=97.65 E-value=0.00017 Score=83.69 Aligned_cols=80 Identities=18% Similarity=0.327 Sum_probs=62.9
Q ss_pred CHhhHHHHHHHHHHCCCCEEEeceeccccCC-CCceeeecccchHHHHHHHHHHcCCEEE--EecCceeeeecCCC----
Q 003490 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEP-SPGNYNFEGRYDLVRFIKTIQKAGLYAH--LRIGPYVCAEWNFG---- 127 (816)
Q Consensus 55 ~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp-~~G~ydF~g~~dl~~fi~la~~~GL~vi--lR~GPYicaEw~~G---- 127 (816)
.++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..+++++++++||++. |.. --|+- +-|
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSF--HqCGG-NVGD~~~ 339 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAF--HEYGG-NASGNVM 339 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--eccCC-CCCCccc
Confidence 4556778999999999999999999999998 599999996 6677999999999964 553 22333 222
Q ss_pred -CCCccccc----cCCeE
Q 003490 128 -GFPVWLKY----VPGIS 140 (816)
Q Consensus 128 -GlP~WL~~----~p~i~ 140 (816)
-||.|+.+ +|+|.
T Consensus 340 IPLP~WV~e~g~~nPDif 357 (681)
T PLN02705 340 ISLPQWVLEIGKDNQDIF 357 (681)
T ss_pred ccCCHHHHHhcccCCCce
Confidence 38999975 57764
No 22
>PLN02803 beta-amylase
Probab=97.61 E-value=0.00032 Score=80.66 Aligned_cols=81 Identities=23% Similarity=0.580 Sum_probs=62.7
Q ss_pred CHhhHHHHHHHHHHCCCCEEEeceeccccCCC-CceeeecccchHHHHHHHHHHcCCEEE--EecCceeeeecCCC----
Q 003490 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPS-PGNYNFEGRYDLVRFIKTIQKAGLYAH--LRIGPYVCAEWNFG---- 127 (816)
Q Consensus 55 ~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~-~G~ydF~g~~dl~~fi~la~~~GL~vi--lR~GPYicaEw~~G---- 127 (816)
.++.-+..|+++|++|++.|.+=|.|.+.|.. |++|||+| ..+++++++++||++. +.. --|+- +-|
T Consensus 105 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~ 178 (548)
T PLN02803 105 KPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSF--HQCGG-NVGDSCS 178 (548)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 34556779999999999999999999999995 99999996 6677999999999964 543 22322 112
Q ss_pred -CCCccccc----cCCeEe
Q 003490 128 -GFPVWLKY----VPGISF 141 (816)
Q Consensus 128 -GlP~WL~~----~p~i~~ 141 (816)
-||.|+.+ +|+|.+
T Consensus 179 IpLP~WV~e~~~~~pDi~f 197 (548)
T PLN02803 179 IPLPPWVLEEMSKNPDLVY 197 (548)
T ss_pred ccCCHHHHHhhhcCCCceE
Confidence 28999975 577743
No 23
>TIGR03356 BGL beta-galactosidase.
Probab=97.61 E-value=6.8e-05 Score=86.10 Aligned_cols=97 Identities=16% Similarity=0.202 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHHCCCCEEEeceeccccCCC-CceeeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccccc
Q 003490 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPS-PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKY 135 (816)
Q Consensus 57 ~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~-~G~ydF~g~~dl~~fi~la~~~GL~vilR~GPYicaEw~~GGlP~WL~~ 135 (816)
..|+++|+.||++|+|++++-|.|...+|. +|++|.+|-...+++|+.+.++||.+|+-.= .=.+|.||.+
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~--------Hfd~P~~l~~ 125 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY--------HWDLPQALED 125 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec--------cCCccHHHHh
Confidence 468999999999999999999999999999 7999998888999999999999999887642 2358999986
Q ss_pred cCCeEeecCChhHHHHHHHHHHHHHHHHHh
Q 003490 136 VPGISFRTDNEPFKRAMQGFTEKIVNLMKS 165 (816)
Q Consensus 136 ~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~ 165 (816)
..|- .++...++..+|.+.+++++++
T Consensus 126 ~gGw----~~~~~~~~f~~ya~~~~~~~~d 151 (427)
T TIGR03356 126 RGGW----LNRDTAEWFAEYAAVVAERLGD 151 (427)
T ss_pred cCCC----CChHHHHHHHHHHHHHHHHhCC
Confidence 6553 2466667777777777777763
No 24
>PLN02905 beta-amylase
Probab=97.59 E-value=0.00025 Score=82.55 Aligned_cols=113 Identities=23% Similarity=0.473 Sum_probs=80.5
Q ss_pred CHhhHHHHHHHHHHCCCCEEEeceeccccCC-CCceeeecccchHHHHHHHHHHcCCEEE--EecCceeeeecCCC----
Q 003490 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEP-SPGNYNFEGRYDLVRFIKTIQKAGLYAH--LRIGPYVCAEWNFG---- 127 (816)
Q Consensus 55 ~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp-~~G~ydF~g~~dl~~fi~la~~~GL~vi--lR~GPYicaEw~~G---- 127 (816)
.++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..+++++++++||++. +.. --|+- +-|
T Consensus 284 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSF--HqCGG-NVGD~~~ 357 (702)
T PLN02905 284 DPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSF--HECGG-NVGDDVC 357 (702)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 3455677899999999999999999999998 699999996 6677999999999964 543 22332 112
Q ss_pred -CCCccccc----cCCeEee------------------------cCChhHHHHHHHHHHHHHHHHHhcccccccCCceEE
Q 003490 128 -GFPVWLKY----VPGISFR------------------------TDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIIL 178 (816)
Q Consensus 128 -GlP~WL~~----~p~i~~R------------------------t~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~ 178 (816)
-||.|+.+ +|+|.+. |--..|.+.|+.|-..+.+.|. +|-|.-
T Consensus 358 IPLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~--------~g~I~e 429 (702)
T PLN02905 358 IPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFFE--------DGVISM 429 (702)
T ss_pred ccCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHhc--------CCceEE
Confidence 39999975 5776431 1113466666666555544443 368888
Q ss_pred ecc
Q 003490 179 SQI 181 (816)
Q Consensus 179 ~Qi 181 (816)
+||
T Consensus 430 I~V 432 (702)
T PLN02905 430 VEV 432 (702)
T ss_pred EEe
Confidence 887
No 25
>PLN00197 beta-amylase; Provisional
Probab=97.53 E-value=0.00033 Score=80.81 Aligned_cols=81 Identities=26% Similarity=0.575 Sum_probs=63.7
Q ss_pred CHhhHHHHHHHHHHCCCCEEEeceeccccCC-CCceeeecccchHHHHHHHHHHcCCEEE--EecCceeeeecCCC----
Q 003490 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEP-SPGNYNFEGRYDLVRFIKTIQKAGLYAH--LRIGPYVCAEWNFG---- 127 (816)
Q Consensus 55 ~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp-~~G~ydF~g~~dl~~fi~la~~~GL~vi--lR~GPYicaEw~~G---- 127 (816)
.++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..+++++++++||++. +.. --|+- +-|
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSF--HqCGG-NVGD~~~ 198 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSF--HQCGG-NVGDSCT 198 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4566788999999999999999999999998 699999996 6677999999999964 543 22332 112
Q ss_pred -CCCccccc----cCCeEe
Q 003490 128 -GFPVWLKY----VPGISF 141 (816)
Q Consensus 128 -GlP~WL~~----~p~i~~ 141 (816)
-||.|+.+ +|+|.+
T Consensus 199 IpLP~WV~~~g~~dpDiff 217 (573)
T PLN00197 199 IPLPKWVVEEVDKDPDLAY 217 (573)
T ss_pred ccCCHHHHHhhccCCCcee
Confidence 38999975 577643
No 26
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.45 E-value=0.00016 Score=81.18 Aligned_cols=114 Identities=18% Similarity=0.352 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHCCCCEEEeceeccccCCC-CceeeecccchHHHHHHHHHHcCCEEEEecCceeeee----cCCCCCCcc
Q 003490 58 MWEDLIQKAKDGGLDVIETYVFWNVHEPS-PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAE----WNFGGFPVW 132 (816)
Q Consensus 58 ~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~-~G~ydF~g~~dl~~fi~la~~~GL~vilR~GPYicaE----w~~GGlP~W 132 (816)
--+..|+++|++|++.|.+.|.|.+.|.. |++|||+| -.++.++++++||++.+-..=--|+- .-+=-||.|
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP~W 93 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSG---YRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLPSW 93 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HH---HHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-HH
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCCHH
Confidence 45678999999999999999999999997 99999996 77789999999999654321112211 111138999
Q ss_pred ccc---cCCeEeec--------------CChhHHHHHHHHHHHHHHHHHhcccccccCCceEEecc
Q 003490 133 LKY---VPGISFRT--------------DNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQI 181 (816)
Q Consensus 133 L~~---~p~i~~Rt--------------~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~Qi 181 (816)
+.+ ..+|.+.. .... ++.-+.|++.....++ +++ +-|..+||
T Consensus 94 v~~~~~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~--~~~----~~I~~I~v 152 (402)
T PF01373_consen 94 VWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFS--DYL----STITEIQV 152 (402)
T ss_dssp HHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCH--HHH----TGEEEEEE
T ss_pred HHhccccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHH--HHH----hhheEEEe
Confidence 974 22553211 1122 5555666666666666 432 67888886
No 27
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=96.93 E-value=0.0026 Score=70.55 Aligned_cols=158 Identities=18% Similarity=0.292 Sum_probs=109.3
Q ss_pred EEEEEeeCCCCCHhhHHHHHHHHHHCCCCEEEec--eeccccCCCCceeeecccchHHHHHHHHHHcCCEEEEecCceee
Q 003490 44 LFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETY--VFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVC 121 (816)
Q Consensus 44 l~sG~~Hy~R~~~~~W~d~l~k~Ka~GlNtI~ty--vfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vilR~GPYic 121 (816)
.++.+++..++..+. ..+.+-..-||.|..- .-|...||++|+|||+ ..+++++.|+++||.|---+ -+
T Consensus 11 ~~G~av~~~~~~~~~---~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH~--Lv- 81 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDP---RYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGHT--LV- 81 (320)
T ss_dssp EEEEEEBGGGHTHHH---HHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEEE--EE-
T ss_pred CEEEEechhHcCCcH---HHHHHHHHhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeeee--EE-
Confidence 688999988876552 3334444568888874 6699999999999999 89999999999999875331 11
Q ss_pred eecCCCCCCccccccCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEeccccccccccc---------cc
Q 003490 122 AEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSK---------LL 192 (816)
Q Consensus 122 aEw~~GGlP~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QiENEyg~~~~---------~~ 192 (816)
|.. ..|.|+...+... ..+-+...+.++++++.++.+.++. |.|..|-|=||-=.... -|
T Consensus 82 --W~~-~~P~w~~~~~~~~-~~~~~~~~~~l~~~I~~v~~~y~~~-------g~i~~WDVvNE~i~~~~~~~~~r~~~~~ 150 (320)
T PF00331_consen 82 --WHS-QTPDWVFNLANGS-PDEKEELRARLENHIKTVVTRYKDK-------GRIYAWDVVNEAIDDDGNPGGLRDSPWY 150 (320)
T ss_dssp --ESS-SS-HHHHTSTTSS-BHHHHHHHHHHHHHHHHHHHHTTTT-------TTESEEEEEES-B-TTSSSSSBCTSHHH
T ss_pred --Ecc-cccceeeeccCCC-cccHHHHHHHHHHHHHHHHhHhccc-------cceEEEEEeeecccCCCccccccCChhh
Confidence 544 7899998751100 0001248889999999998888721 89999999999532211 12
Q ss_pred CcccHHHHHHHHHHHHHcCCCcceeecCC
Q 003490 193 GAAGHNYMTWAAKMAVEMGTGVPWVMCKE 221 (816)
Q Consensus 193 ~~~~~~Y~~~l~~~~~~~g~~vp~~~~~~ 221 (816)
...+.+|+..+-++|++...++.++.++-
T Consensus 151 ~~lG~~yi~~aF~~A~~~~P~a~L~~NDy 179 (320)
T PF00331_consen 151 DALGPDYIADAFRAAREADPNAKLFYNDY 179 (320)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTSEEEEEES
T ss_pred hcccHhHHHHHHHHHHHhCCCcEEEeccc
Confidence 22457899999999998888888888774
No 28
>KOG4729 consensus Galactoside-binding lectin [General function prediction only]
Probab=96.92 E-value=0.001 Score=70.23 Aligned_cols=57 Identities=25% Similarity=0.427 Sum_probs=49.5
Q ss_pred CCeEEeeCCCCCeEeEEeeeecCCCc-cCCCC--cC--cccccCCchHHHHHhhcCCCCcccc
Q 003490 758 SPKVHLRCSPGHTISSIKFASFGTPL-GTCGS--YQ--QGPCHSPTSYDILEKVFITALISSV 815 (816)
Q Consensus 758 ~~~~~L~C~~g~~Is~I~fAs~G~p~-G~Cg~--~~--~g~C~~~~s~~iv~~~C~G~~~C~v 815 (816)
+..++|+||.|.+|| |+-|.|||-. -.|-+ ++ .-+|-.+.|.+|+.+.|.++++|.|
T Consensus 43 G~~i~L~CP~~dvIs-v~sanYGR~~~~iC~pd~~~~~Si~C~~p~s~~i~~~rCnnr~~C~v 104 (265)
T KOG4729|consen 43 GERITLSCPRGDVIS-VQSANYGRFSDKICDPDPGREESINCYLPKSFSILSSRCNNRRQCTV 104 (265)
T ss_pred CceEEEEcCCCCEEE-EEecccCcccccccCCccccccchhccChHHHHHHHHhcCCCceEEE
Confidence 668999999999999 9999999975 47843 33 2379999999999999999999986
No 29
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=96.79 E-value=0.0027 Score=62.93 Aligned_cols=67 Identities=25% Similarity=0.444 Sum_probs=50.8
Q ss_pred CCCceEEEEEEeCCCCC--CCeEEeeCCC-ccEEEEECCeeeeeeeeccccCCCCCcccccCcCCCcccCCCCCcceeee
Q 003490 618 QQPLMWHKAYFNAPEGD--EPLALDMEGM-GKGQIWINGQSVGRYWTAYAKGDCNGCNYVGGYRPTKCQLGCGQPTQRWY 694 (816)
Q Consensus 618 ~~~~twYk~~F~~p~g~--dp~~Ldl~g~-gKG~~wVNG~niGRYW~~~~~g~~~~c~y~G~y~~~kc~~~cg~PqqtlY 694 (816)
.....|||++|++|+.. ..++|.+.|. ....|||||+-||+-...+ .. .-+
T Consensus 66 ~~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~-------------------------~~-~~~ 119 (167)
T PF02837_consen 66 YSGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY-------------------------TP-FEF 119 (167)
T ss_dssp CCSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEESTT-------------------------S--EEE
T ss_pred cCceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCCCc-------------------------CC-eEE
Confidence 34679999999999753 3589999988 5899999999999976211 12 235
Q ss_pred ecCcccccCCc-ceEEEE
Q 003490 695 HVPRSWLKPTQ-NFLVVF 711 (816)
Q Consensus 695 hVP~~~Lk~g~-N~LVlf 711 (816)
-|+. .|++|+ |+|.|.
T Consensus 120 dIt~-~l~~g~~N~l~V~ 136 (167)
T PF02837_consen 120 DITD-YLKPGEENTLAVR 136 (167)
T ss_dssp ECGG-GSSSEEEEEEEEE
T ss_pred eChh-hccCCCCEEEEEE
Confidence 5865 799988 988863
No 30
>PRK10150 beta-D-glucuronidase; Provisional
Probab=96.72 E-value=0.0079 Score=72.21 Aligned_cols=100 Identities=22% Similarity=0.186 Sum_probs=69.6
Q ss_pred CCccEEEEEEEecCCCCcccccCCCCceEEeCCcceEEEEEECCEEEEEEEcccccceeEEEeeeeccCCCc-EEEEEEe
Q 003490 467 DASDYLWYITSVDIGSSESFLHGGELPTLIVQSTGHALHIFINGQLSGSAFGTREARRFMYTGKVNLRAGRN-KIALLSV 545 (816)
Q Consensus 467 d~sgYlwY~T~i~~~~~~~~~~~g~~~~L~v~~~~d~~~vfVNg~~vG~~~~~~~~~~~~~~~~i~l~~G~n-~L~ILve 545 (816)
+..|..||+++|.++.. +.|....|++.++...+.|||||++||...+.. ..+.|+++-.|+.|.| +|.|.|.
T Consensus 62 ~~~G~~WYrr~f~lp~~----~~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~~--~~f~~DIT~~l~~G~~n~L~V~v~ 135 (604)
T PRK10150 62 NYVGDVWYQREVFIPKG----WAGQRIVLRFGSVTHYAKVWVNGQEVMEHKGGY--TPFEADITPYVYAGKSVRITVCVN 135 (604)
T ss_pred CCcccEEEEEEEECCcc----cCCCEEEEEECcccceEEEEECCEEeeeEcCCc--cceEEeCchhccCCCceEEEEEEe
Confidence 46788999999988643 235567899999999999999999999876543 3455555444677754 9999997
Q ss_pred cCCcc---ccccCC-------------C-cccccccccEEEecc
Q 003490 546 AVGLP---NVGGHY-------------E-TWNTGILGPVALHGL 572 (816)
Q Consensus 546 n~Gr~---NyG~~~-------------e-~~~kGI~G~V~l~g~ 572 (816)
|.-+. ..|... + ....||.++|.|.-.
T Consensus 136 n~~~~~~~p~g~~~~~~~~~~k~~~~~d~~~~~GI~r~V~L~~~ 179 (604)
T PRK10150 136 NELNWQTLPPGNVIEDGNGKKKQKYNFDFFNYAGIHRPVMLYTT 179 (604)
T ss_pred cCCCcccCCCCccccCCccccccccccccccccCCCceEEEEEc
Confidence 64211 011110 0 136899999999543
No 31
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.63 E-value=0.011 Score=64.66 Aligned_cols=132 Identities=22% Similarity=0.312 Sum_probs=99.9
Q ss_pred HHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccccccCCeEeecCC
Q 003490 66 AKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDN 145 (816)
Q Consensus 66 ~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vilR~GPYicaEw~~GGlP~WL~~~p~i~~Rt~d 145 (816)
+|+.+.=|-+.-.=|+..||++|.|+|+ --++..+.|+++||.+. -=+.| |.+ -.|.|+..+. -+-
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~lh--GHtLv---W~~-q~P~W~~~~e-----~~~ 120 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFE---AADAIANFARKHNMPLH--GHTLV---WHS-QVPDWLFGDE-----LSK 120 (345)
T ss_pred HhhhcccccccccccccccCCCCccCcc---chHHHHHHHHHcCCeec--cceee---ecc-cCCchhhccc-----cCh
Confidence 6677766666777799999999999999 58889999999999653 22222 544 6888887633 234
Q ss_pred hhHHHHHHHHHHHHHHHHHhcccccccCCceEEecccccccc----cc---cccCcccHHHHHHHHHHHHHcCCCcceee
Q 003490 146 EPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGA----QS---KLLGAAGHNYMTWAAKMAVEMGTGVPWVM 218 (816)
Q Consensus 146 ~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QiENEyg~----~~---~~~~~~~~~Y~~~l~~~~~~~g~~vp~~~ 218 (816)
++..+.|++++..++.+.+ |-|+.|-|=||-=. +. +.++..+.+||++.-+.|++.+-+--++.
T Consensus 121 ~~~~~~~e~hI~tV~~rYk---------g~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ 191 (345)
T COG3693 121 EALAKMVEEHIKTVVGRYK---------GSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVI 191 (345)
T ss_pred HHHHHHHHHHHHHHHHhcc---------CceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEe
Confidence 7889999999999999998 35899999999632 21 11224678999999999999776666666
Q ss_pred cC
Q 003490 219 CK 220 (816)
Q Consensus 219 ~~ 220 (816)
++
T Consensus 192 ND 193 (345)
T COG3693 192 ND 193 (345)
T ss_pred ec
Confidence 55
No 32
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.61 E-value=0.00093 Score=77.45 Aligned_cols=97 Identities=18% Similarity=0.254 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHCCCCEEEeceeccccCCC--CceeeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccc
Q 003490 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPS--PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLK 134 (816)
Q Consensus 57 ~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~--~G~ydF~g~~dl~~fi~la~~~GL~vilR~GPYicaEw~~GGlP~WL~ 134 (816)
..|+++|+.||++|+|+.++-+.|...+|. +|++|-+|...-+++|+.+.++||..++-. -.-.+|.||.
T Consensus 58 ~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~~l~ 129 (455)
T PF00232_consen 58 HRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL--------YHFDLPLWLE 129 (455)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--------ESS--BHHHH
T ss_pred hhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--------eeccccccee
Confidence 569999999999999999999999999999 699999999999999999999999977652 3667999998
Q ss_pred ccCCeEeecCChhHHHHHHHHHHHHHHHHHh
Q 003490 135 YVPGISFRTDNEPFKRAMQGFTEKIVNLMKS 165 (816)
Q Consensus 135 ~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~ 165 (816)
+.-|- .++...+...+|.+.+++.+.+
T Consensus 130 ~~ggw----~~~~~~~~F~~Ya~~~~~~~gd 156 (455)
T PF00232_consen 130 DYGGW----LNRETVDWFARYAEFVFERFGD 156 (455)
T ss_dssp HHTGG----GSTHHHHHHHHHHHHHHHHHTT
T ss_pred ecccc----cCHHHHHHHHHHHHHHHHHhCC
Confidence 75442 2466667777777777777773
No 33
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=96.49 E-value=0.0081 Score=76.19 Aligned_cols=94 Identities=18% Similarity=0.279 Sum_probs=68.4
Q ss_pred cEEEEEEEecCCCCcccccCCCCceEEeCCcceEEEEEECCEEEEEEEcccccceeEEEeeeeccCCCcEEEEEEecCCc
Q 003490 470 DYLWYITSVDIGSSESFLHGGELPTLIVQSTGHALHIFINGQLSGSAFGTREARRFMYTGKVNLRAGRNKIALLSVAVGL 549 (816)
Q Consensus 470 gYlwY~T~i~~~~~~~~~~~g~~~~L~v~~~~d~~~vfVNg~~vG~~~~~~~~~~~~~~~~i~l~~G~n~L~ILven~Gr 549 (816)
+-.|||++|.++.. +.|.+..|.+.++...+.|||||++||...+.. ..+.|++.--|+.|.|+|.|.|.+..
T Consensus 109 ~~g~Yrr~F~lp~~----~~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~LaV~V~~~~- 181 (1021)
T PRK10340 109 PTGAYQRTFTLSDG----WQGKQTIIKFDGVETYFEVYVNGQYVGFSKGSR--LTAEFDISAMVKTGDNLLCVRVMQWA- 181 (1021)
T ss_pred CeEEEEEEEEeCcc----cccCcEEEEECccceEEEEEECCEEeccccCCC--ccEEEEcchhhCCCccEEEEEEEecC-
Confidence 56799999988643 235567899999999999999999999876543 23555554457789999999997432
Q ss_pred cccccCCCc----ccccccccEEEecc
Q 003490 550 PNVGGHYET----WNTGILGPVALHGL 572 (816)
Q Consensus 550 ~NyG~~~e~----~~kGI~G~V~l~g~ 572 (816)
.|.+++. ...||..+|.|.-.
T Consensus 182 --d~s~le~qd~w~~sGI~R~V~L~~~ 206 (1021)
T PRK10340 182 --DSTYLEDQDMWWLAGIFRDVYLVGK 206 (1021)
T ss_pred --CCCccccCCccccccccceEEEEEe
Confidence 2333332 34899999998543
No 34
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.07 E-value=0.0066 Score=70.80 Aligned_cols=96 Identities=14% Similarity=0.151 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHHCCCCEEEeceeccccCCC--CceeeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccc
Q 003490 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPS--PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLK 134 (816)
Q Consensus 57 ~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~--~G~ydF~g~~dl~~fi~la~~~GL~vilR~GPYicaEw~~GGlP~WL~ 134 (816)
..|+++++.||++|+|+.++-+-|...+|. ++++|=+|-...+++|+.+.++||..++-. ..=.+|.||.
T Consensus 71 hry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL--------~H~~~P~~l~ 142 (474)
T PRK09852 71 HRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTL--------CHFDVPMHLV 142 (474)
T ss_pred hhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 347999999999999999999999999997 556787888899999999999999977653 2447999997
Q ss_pred cc-CCeEeecCChhHHHHHHHHHHHHHHHHH
Q 003490 135 YV-PGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (816)
Q Consensus 135 ~~-p~i~~Rt~d~~y~~~~~~~~~~i~~~l~ 164 (816)
.. -|- .|+...++..+|.+.+++.+.
T Consensus 143 ~~~GGW----~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 143 TEYGSW----RNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred HhcCCC----CCHHHHHHHHHHHHHHHHHhc
Confidence 64 342 234455555555555555554
No 35
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=96.06 E-value=0.0065 Score=70.90 Aligned_cols=95 Identities=16% Similarity=0.170 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHCCCCEEEeceeccccCCC--CceeeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccccc
Q 003490 58 MWEDLIQKAKDGGLDVIETYVFWNVHEPS--PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKY 135 (816)
Q Consensus 58 ~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~--~G~ydF~g~~dl~~fi~la~~~GL~vilR~GPYicaEw~~GGlP~WL~~ 135 (816)
.|+++|+.||++|+|+-++-+-|....|. +|++|=+|-...+++|+.+.++||..++-. -+=.+|.||.+
T Consensus 70 ry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL--------~H~dlP~~L~~ 141 (477)
T PRK15014 70 HYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITL--------SHFEMPLHLVQ 141 (477)
T ss_pred ccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHHH
Confidence 48899999999999999999999999997 567888898999999999999999977663 24468999976
Q ss_pred c-CCeEeecCChhHHHHHHHHHHHHHHHHH
Q 003490 136 V-PGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (816)
Q Consensus 136 ~-p~i~~Rt~d~~y~~~~~~~~~~i~~~l~ 164 (816)
. -|- .|+...++-.+|.+.+++.++
T Consensus 142 ~yGGW----~n~~~~~~F~~Ya~~~f~~fg 167 (477)
T PRK15014 142 QYGSW----TNRKVVDFFVRFAEVVFERYK 167 (477)
T ss_pred hcCCC----CChHHHHHHHHHHHHHHHHhc
Confidence 4 442 245556666666666666665
No 36
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=96.01 E-value=0.019 Score=64.03 Aligned_cols=104 Identities=26% Similarity=0.482 Sum_probs=67.8
Q ss_pred HHHHHHHHHCCCCEEEeceeccccCCCC-ceeeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccccccCC
Q 003490 60 EDLIQKAKDGGLDVIETYVFWNVHEPSP-GNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPG 138 (816)
Q Consensus 60 ~d~l~k~Ka~GlNtI~tyvfWn~hEp~~-G~ydF~g~~dl~~fi~la~~~GL~vilR~GPYicaEw~~GGlP~WL~~~p~ 138 (816)
+|.|+-+|+.|+|.|+.=| |+ .|.. |..|.+ +..+..+.|+++||.|+|-.- |- -.|- +|+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv--~P~~~g~~~~~---~~~~~akrak~~Gm~vlldfH-YS---------D~Wa--DPg 88 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WV--NPYDGGYNDLE---DVIALAKRAKAAGMKVLLDFH-YS---------DFWA--DPG 88 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--S--S-TTTTTTSHH---HHHHHHHHHHHTT-EEEEEE--SS---------SS----BTT
T ss_pred CCHHHHHHhcCCCeEEEEe-cc--CCcccccCCHH---HHHHHHHHHHHCCCeEEEeec-cc---------CCCC--CCC
Confidence 5789999999999999988 54 4555 666666 777777888899999999852 11 1122 233
Q ss_pred eEee------cCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEecccccccc
Q 003490 139 ISFR------TDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGA 187 (816)
Q Consensus 139 i~~R------t~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QiENEyg~ 187 (816)
-+.. .+-..-.+++..|++.++..|++ +|=.+=||||-||..+
T Consensus 89 ~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~------~G~~pd~VQVGNEin~ 137 (332)
T PF07745_consen 89 KQNKPAAWANLSFDQLAKAVYDYTKDVLQALKA------AGVTPDMVQVGNEINN 137 (332)
T ss_dssp B-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHH------TT--ESEEEESSSGGG
T ss_pred CCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHH------CCCCccEEEeCccccc
Confidence 2211 13356788999999999999994 4557779999999653
No 37
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=96.00 E-value=0.024 Score=64.93 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=71.7
Q ss_pred CHhhH-----HHHHHHHHHCCCCEEEeceeccccCCCC--ceeee-ccc-chHHHHHHHHHHcCCEEEEec----Cceee
Q 003490 55 TPDMW-----EDLIQKAKDGGLDVIETYVFWNVHEPSP--GNYNF-EGR-YDLVRFIKTIQKAGLYAHLRI----GPYVC 121 (816)
Q Consensus 55 ~~~~W-----~d~l~k~Ka~GlNtI~tyvfWn~hEp~~--G~ydF-~g~-~dl~~fi~la~~~GL~vilR~----GPYic 121 (816)
...-| ++.+..||.+|||+||.++.|..+++.. ..|-. ... .-|++.|+.|++.||+|+|-. |.-.|
T Consensus 66 ~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~ 145 (407)
T COG2730 66 LESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNG 145 (407)
T ss_pred chhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCC
Confidence 44557 8899999999999999999955446543 23322 111 278899999999999999983 22222
Q ss_pred eecCCCCCCccccccCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEecccccccc
Q 003490 122 AEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGA 187 (816)
Q Consensus 122 aEw~~GGlP~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QiENEyg~ 187 (816)
-| ..|....-. .....+++..+-.+.|+.+.+ +.-.||++|+=||.-.
T Consensus 146 ~~------~s~~~~~~~-----~~~~~~~~~~~~w~~ia~~f~-------~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 146 HE------HSGYTSDYK-----EENENVEATIDIWKFIANRFK-------NYDTVIGFELINEPNG 193 (407)
T ss_pred cC------ccccccccc-----ccchhHHHHHHHHHHHHHhcc-------CCCceeeeeeecCCcc
Confidence 11 122221100 022233444444455555555 3458999999999864
No 38
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=95.99 E-value=0.024 Score=71.97 Aligned_cols=94 Identities=22% Similarity=0.277 Sum_probs=66.4
Q ss_pred ccEEEEEEEecCCCCcccccCCC-CceEEeCCcceEEEEEECCEEEEEEEcccccceeEEEeeeeccCCCcEEEEEEecC
Q 003490 469 SDYLWYITSVDIGSSESFLHGGE-LPTLIVQSTGHALHIFINGQLSGSAFGTREARRFMYTGKVNLRAGRNKIALLSVAV 547 (816)
Q Consensus 469 sgYlwY~T~i~~~~~~~~~~~g~-~~~L~v~~~~d~~~vfVNg~~vG~~~~~~~~~~~~~~~~i~l~~G~n~L~ILven~ 547 (816)
.+-.||+++|.++.+- .+. +..|++.++...+.|||||+++|...+.. ..+.|++.-.|+.|.|+|.|.|..-
T Consensus 119 n~~gwYrr~F~vp~~w----~~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~L~V~V~~~ 192 (1027)
T PRK09525 119 NPTGCYSLTFTVDESW----LQSGQTRIIFDGVNSAFHLWCNGRWVGYSQDSR--LPAEFDLSPFLRAGENRLAVMVLRW 192 (1027)
T ss_pred CCeEEEEEEEEeChhh----cCCCeEEEEECeeccEEEEEECCEEEEeecCCC--ceEEEEChhhhcCCccEEEEEEEec
Confidence 3678999999886431 122 56899999999999999999999876543 3355655545788999999988432
Q ss_pred CccccccCCCc----ccccccccEEEec
Q 003490 548 GLPNVGGHYET----WNTGILGPVALHG 571 (816)
Q Consensus 548 Gr~NyG~~~e~----~~kGI~G~V~l~g 571 (816)
- -|.+++. ...||..+|.|.-
T Consensus 193 s---dgs~~e~qd~w~~sGI~R~V~L~~ 217 (1027)
T PRK09525 193 S---DGSYLEDQDMWRMSGIFRDVSLLH 217 (1027)
T ss_pred C---CCCccccCCceeeccccceEEEEE
Confidence 1 2333332 3479999999844
No 39
>PLN02998 beta-glucosidase
Probab=95.89 E-value=0.009 Score=70.05 Aligned_cols=100 Identities=16% Similarity=0.195 Sum_probs=75.2
Q ss_pred hhHHHHHHHHHHCCCCEEEeceeccccCCC-CceeeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccccc
Q 003490 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPS-PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKY 135 (816)
Q Consensus 57 ~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~-~G~ydF~g~~dl~~fi~la~~~GL~vilR~GPYicaEw~~GGlP~WL~~ 135 (816)
..|+++|+.||++|+|+-++-|-|...+|. .|.+|=+|-..-+++|+.+.++||..++-. -+=-+|.||.+
T Consensus 82 hry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL--------~H~dlP~~L~~ 153 (497)
T PLN02998 82 HKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTL--------HHFDLPQALED 153 (497)
T ss_pred HhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEe--------cCCCCCHHHHH
Confidence 458999999999999999999999999997 678888899999999999999999866542 13358999986
Q ss_pred c-CCeEeecCChhHHHHHHHHHHHHHHHHH
Q 003490 136 V-PGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (816)
Q Consensus 136 ~-p~i~~Rt~d~~y~~~~~~~~~~i~~~l~ 164 (816)
. -|-.-|..=..|.++++.-++++.++++
T Consensus 154 ~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk 183 (497)
T PLN02998 154 EYGGWLSQEIVRDFTAYADTCFKEFGDRVS 183 (497)
T ss_pred hhCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 4 5532222224455555555555555554
No 40
>PLN02814 beta-glucosidase
Probab=95.77 E-value=0.011 Score=69.59 Aligned_cols=100 Identities=18% Similarity=0.204 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHHCCCCEEEeceeccccCCC-CceeeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccccc
Q 003490 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPS-PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKY 135 (816)
Q Consensus 57 ~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~-~G~ydF~g~~dl~~fi~la~~~GL~vilR~GPYicaEw~~GGlP~WL~~ 135 (816)
..|+++++.||++|+|+-++-+-|.-.+|. +|++|-+|-..-+++|+.+.++||..++-. -+=-+|.||.+
T Consensus 77 hry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL--------~H~dlP~~L~~ 148 (504)
T PLN02814 77 HKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTL--------YHYDLPQSLED 148 (504)
T ss_pred HhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEe--------cCCCCCHHHHH
Confidence 458999999999999999999999999996 688999999999999999999999866553 13357999987
Q ss_pred c-CCeEeecCChhHHHHHHHHHHHHHHHHH
Q 003490 136 V-PGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (816)
Q Consensus 136 ~-p~i~~Rt~d~~y~~~~~~~~~~i~~~l~ 164 (816)
. -|-.-|..=..|.++++.-++++..++|
T Consensus 149 ~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 178 (504)
T PLN02814 149 EYGGWINRKIIEDFTAFADVCFREFGEDVK 178 (504)
T ss_pred hcCCcCChhHHHHHHHHHHHHHHHhCCcCC
Confidence 4 4432222223455555555555444444
No 41
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=95.76 E-value=0.012 Score=68.69 Aligned_cols=96 Identities=15% Similarity=0.116 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHHCCCCEEEeceeccccCCC-CceeeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccccc
Q 003490 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPS-PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKY 135 (816)
Q Consensus 57 ~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~-~G~ydF~g~~dl~~fi~la~~~GL~vilR~GPYicaEw~~GGlP~WL~~ 135 (816)
..|+++++.||++|+|+-++-+.|.-.+|. +|.+|-+|-..-+++|+.+.++||.-++-. -+=.+|.||.+
T Consensus 54 ~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 125 (469)
T PRK13511 54 HRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTL--------HHFDTPEALHS 125 (469)
T ss_pred hhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCcHHHHH
Confidence 357899999999999999999999999997 578888899999999999999999866553 13368999987
Q ss_pred cCCeEeecCChhHHHHHHHHHHHHHHHHH
Q 003490 136 VPGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (816)
Q Consensus 136 ~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~ 164 (816)
.-|- .++...++..+|.+.+++.+.
T Consensus 126 ~GGW----~n~~~v~~F~~YA~~~~~~fg 150 (469)
T PRK13511 126 NGDW----LNRENIDHFVRYAEFCFEEFP 150 (469)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 5442 234444444444444444443
No 42
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=95.74 E-value=0.014 Score=68.25 Aligned_cols=100 Identities=17% Similarity=0.142 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHHCCCCEEEeceeccccCCC--CceeeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccc
Q 003490 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPS--PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLK 134 (816)
Q Consensus 57 ~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~--~G~ydF~g~~dl~~fi~la~~~GL~vilR~GPYicaEw~~GGlP~WL~ 134 (816)
..|+++|+.||++|+|+-++-+-|...+|. +|++|=+|-..-+++|+.+.++||..++-. -+=-+|.||.
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL--------~H~dlP~~L~ 144 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTI--------THFDCPMHLI 144 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------cccCCCHHHH
Confidence 458999999999999999999999999997 667888888999999999999999866542 1336899998
Q ss_pred cc-CCeEeecCChhHHHHHHHHHHHHHHHHH
Q 003490 135 YV-PGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (816)
Q Consensus 135 ~~-p~i~~Rt~d~~y~~~~~~~~~~i~~~l~ 164 (816)
+. -|-.-|..=..|.++++.-++++.++++
T Consensus 145 ~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk 175 (478)
T PRK09593 145 EEYGGWRNRKMVGFYERLCRTLFTRYKGLVK 175 (478)
T ss_pred hhcCCCCChHHHHHHHHHHHHHHHHhcCcCC
Confidence 64 4532222223455555555555555554
No 43
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=95.62 E-value=0.015 Score=67.98 Aligned_cols=100 Identities=17% Similarity=0.127 Sum_probs=74.5
Q ss_pred hhHHHHHHHHHHCCCCEEEeceeccccCCC--CceeeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccc
Q 003490 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPS--PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLK 134 (816)
Q Consensus 57 ~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~--~G~ydF~g~~dl~~fi~la~~~GL~vilR~GPYicaEw~~GGlP~WL~ 134 (816)
..|+++|+.||++|+|+-++-+-|.-.+|. +|.+|=+|-..-+++|+.+.++||.-++-. -+=-+|.||.
T Consensus 67 hry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL--------~H~dlP~~L~ 138 (476)
T PRK09589 67 HRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTL--------SHFEMPYHLV 138 (476)
T ss_pred HhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCCHHHH
Confidence 458999999999999999999999999997 566888888899999999999999866553 1336899997
Q ss_pred cc-CCeEeecCChhHHHHHHHHHHHHHHHHH
Q 003490 135 YV-PGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (816)
Q Consensus 135 ~~-p~i~~Rt~d~~y~~~~~~~~~~i~~~l~ 164 (816)
+. -|-.-|..=..|.++++.-++++..++|
T Consensus 139 ~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 169 (476)
T PRK09589 139 TEYGGWRNRKLIDFFVRFAEVVFTRYKDKVK 169 (476)
T ss_pred HhcCCcCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 64 4532222224455555555555555554
No 44
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=95.61 E-value=0.19 Score=50.79 Aligned_cols=64 Identities=22% Similarity=0.374 Sum_probs=47.1
Q ss_pred CCCCHhhHHHHHHHHHHCCCCEEEeceeccccC-----CC---CceeeecccchHHHHHHHHHHcCCEEEEecC
Q 003490 52 PRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHE-----PS---PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (816)
Q Consensus 52 ~R~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hE-----p~---~G~ydF~g~~dl~~fi~la~~~GL~vilR~G 117 (816)
-.++++.|+..++.||++|+|||=.- |...+ |. ++.|.-....-|+.+|++|++.||.|.+-.+
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~ 86 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLY 86 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCC
Confidence 57899999999999999999998421 22221 11 2233334456899999999999999998753
No 45
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=95.59 E-value=0.016 Score=67.64 Aligned_cols=103 Identities=13% Similarity=0.112 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHCCCCEEEeceeccccCCC-CceeeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccccc
Q 003490 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPS-PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKY 135 (816)
Q Consensus 57 ~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~-~G~ydF~g~~dl~~fi~la~~~GL~vilR~GPYicaEw~~GGlP~WL~~ 135 (816)
..|+++|+.||++|+|+-++-+-|...+|. +|++|=+|-..-+++|+.+.++||..++-. -+=-+|.||.+
T Consensus 53 hry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 124 (467)
T TIGR01233 53 HKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTL--------HHFDTPEALHS 124 (467)
T ss_pred hhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEec--------cCCCCcHHHHH
Confidence 358899999999999999999999999996 678888899999999999999999866653 13358999987
Q ss_pred cCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccc
Q 003490 136 VPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFES 171 (816)
Q Consensus 136 ~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~ 171 (816)
.-|- .++...++-.+|.+.+++.+.+-++..+
T Consensus 125 ~GGW----~n~~~v~~F~~YA~~~f~~fgdVk~WiT 156 (467)
T TIGR01233 125 NGDF----LNRENIEHFIDYAAFCFEEFPEVNYWTT 156 (467)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 5443 2444555555555555555553333333
No 46
>PLN02849 beta-glucosidase
Probab=95.52 E-value=0.017 Score=67.89 Aligned_cols=100 Identities=20% Similarity=0.252 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHCCCCEEEeceeccccCCC-CceeeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccccc
Q 003490 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPS-PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKY 135 (816)
Q Consensus 57 ~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~-~G~ydF~g~~dl~~fi~la~~~GL~vilR~GPYicaEw~~GGlP~WL~~ 135 (816)
..|+++|+.||++|+|+-++-+-|.-.+|. .|++|=+|-..-+++|+.+.++||.-++-. -+=-+|.||.+
T Consensus 79 hrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 150 (503)
T PLN02849 79 HKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTL--------FHYDHPQYLED 150 (503)
T ss_pred HhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEee--------cCCCCcHHHHH
Confidence 458999999999999999999999999997 478888899999999999999999866542 13368999987
Q ss_pred c-CCeEeecCChhHHHHHHHHHHHHHHHHH
Q 003490 136 V-PGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (816)
Q Consensus 136 ~-p~i~~Rt~d~~y~~~~~~~~~~i~~~l~ 164 (816)
. -|-.=|..=..|.++++.-++++.+++|
T Consensus 151 ~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk 180 (503)
T PLN02849 151 DYGGWINRRIIKDFTAYADVCFREFGNHVK 180 (503)
T ss_pred hcCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 4 4532222224455555555555555554
No 47
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.57 E-value=0.17 Score=55.00 Aligned_cols=118 Identities=24% Similarity=0.266 Sum_probs=80.3
Q ss_pred HHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHH---HcCCEEEEecCceeeeecCCCCCCccccc
Q 003490 59 WEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQ---KAGLYAHLRIGPYVCAEWNFGGFPVWLKY 135 (816)
Q Consensus 59 W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~---~~GL~vilR~GPYicaEw~~GGlP~WL~~ 135 (816)
=.|.|+-+|+.|+|-|+.-| ||-.--..|+=-=-|+.|+.+.|++|+ ..||+|++..= +-.|-.+
T Consensus 65 ~qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH-----------YSDfwaD 132 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH-----------YSDFWAD 132 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc-----------chhhccC
Confidence 46899999999999999865 666544455544567899999998865 56999999851 1112111
Q ss_pred -----cCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEecccccccc-cccccCc
Q 003490 136 -----VPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGA-QSKLLGA 194 (816)
Q Consensus 136 -----~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QiENEyg~-~~~~~~~ 194 (816)
+|.-..--+-+.-.+++-.|.+..+..++++.. -+=||||-||-.+ +-+..|+
T Consensus 133 PakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~eGi------~pdmVQVGNEtn~gflwp~Ge 191 (403)
T COG3867 133 PAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKEGI------LPDMVQVGNETNGGFLWPDGE 191 (403)
T ss_pred hhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCC------CccceEeccccCCceeccCCC
Confidence 222112233456778888899999999996543 5669999999753 3333343
No 48
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=93.67 E-value=0.77 Score=54.11 Aligned_cols=333 Identities=18% Similarity=0.295 Sum_probs=156.8
Q ss_pred EEeEEEEEEee------CCCCCHhhHHHHHHHH---HHCCCCEEEecee--------ccccCCCCc-----eeeecc--c
Q 003490 40 QRRILFSGSIH------YPRSTPDMWEDLIQKA---KDGGLDVIETYVF--------WNVHEPSPG-----NYNFEG--R 95 (816)
Q Consensus 40 ~~~~l~sG~~H------y~R~~~~~W~d~l~k~---Ka~GlNtI~tyvf--------Wn~hEp~~G-----~ydF~g--~ 95 (816)
|++.=|+|++= ..+.+++.=+..|+.+ +-+|++.+++.+- +.+-+ .|+ .|+... .
T Consensus 74 Q~i~GFGga~Tdasa~~l~~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d-~~~D~~l~~Fs~~~~d~ 152 (496)
T PF02055_consen 74 QTIDGFGGAFTDASAYNLQKLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDD-VPGDFNLSNFSIAREDK 152 (496)
T ss_dssp EE--EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST--STTHTTTTT---HHHHH
T ss_pred eEEEEEeeeHHHHHHHHHHhCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccC-CCCCCccccCCccccch
Confidence 34444677763 2334444333334333 4589999998775 22222 233 222221 1
Q ss_pred chHHHHHHHHHHc--CCEEEEecCceeeeecCCCCCCccccccCCe----Eeec-CChhHHHHHHHHHHHHHHHHHhccc
Q 003490 96 YDLVRFIKTIQKA--GLYAHLRIGPYVCAEWNFGGFPVWLKYVPGI----SFRT-DNEPFKRAMQGFTEKIVNLMKSENL 168 (816)
Q Consensus 96 ~dl~~fi~la~~~--GL~vilR~GPYicaEw~~GGlP~WL~~~p~i----~~Rt-~d~~y~~~~~~~~~~i~~~l~~~~l 168 (816)
..+..+|+.|++. +|+++.-| |. .|+|+.....+ .++. .++.|.++...|+.+-++.+++
T Consensus 153 ~~~ip~ik~a~~~~~~lki~aSp-------WS---pP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~--- 219 (496)
T PF02055_consen 153 KYKIPLIKEALAINPNLKIFASP-------WS---PPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKK--- 219 (496)
T ss_dssp TTHHHHHHHHHHHHTT-EEEEEE-------S------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHC---
T ss_pred hhHHHHHHHHHHhCCCcEEEEec-------CC---CCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHH---
Confidence 2335688887765 57777665 63 69999864332 2442 3456888888888888888874
Q ss_pred ccccCCceEEecccccccccc---cccC------cccHHHHH-HHHHHHHHcCC--CcceeecCC--CCCCC---cccc-
Q 003490 169 FESQGGPIILSQIENEYGAQS---KLLG------AAGHNYMT-WAAKMAVEMGT--GVPWVMCKE--EDAPD---PVIN- 230 (816)
Q Consensus 169 ~~~~gGpII~~QiENEyg~~~---~~~~------~~~~~Y~~-~l~~~~~~~g~--~vp~~~~~~--~~~~~---~vi~- 230 (816)
+|=||=++-+.||..... ..|. +.-+++++ .|.-.+++.++ ++-+++.+. .+.|+ .++.
T Consensus 220 ---~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d 296 (496)
T PF02055_consen 220 ---EGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILND 296 (496)
T ss_dssp ---TT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTS
T ss_pred ---CCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcC
Confidence 455999999999976421 1111 12356664 47778888876 676666553 12231 1221
Q ss_pred -----CCC--CCcc--C-CC-------CCCCCCCCceeeecccccccccCCCCC---cCCHHHHHHHHHHHHHhCCeeee
Q 003490 231 -----SCN--GFYC--D-AF-------TPNQPYKPTIWTEAWSGWFTEFGGPIH---QRPVQDLAFAAARFIQKGGSFIN 290 (816)
Q Consensus 231 -----t~n--g~~~--~-~~-------~~~~p~~P~~~tE~w~Gwf~~wG~~~~---~r~~~d~~~~~~~~l~~g~s~~n 290 (816)
... +++| . .. ....|++.++.||-..|.. .|+.... ...++..+..+..-+..+.+ +
T Consensus 297 ~~A~~yv~GiA~HwY~g~~~~~~l~~~h~~~P~k~l~~TE~~~g~~-~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~--g 373 (496)
T PF02055_consen 297 PEAAKYVDGIAFHWYGGDPSPQALDQVHNKFPDKFLLFTEACCGSW-NWDTSVDLGSWDRAERYAHDIIGDLNNWVS--G 373 (496)
T ss_dssp HHHHTTEEEEEEEETTCS-HCHHHHHHHHHSTTSEEEEEEEESS-S-TTS-SS-TTHHHHHHHHHHHHHHHHHTTEE--E
T ss_pred hhhHhheeEEEEECCCCCchhhHHHHHHHHCCCcEEEeeccccCCC-CcccccccccHHHHHHHHHHHHHHHHhhce--e
Confidence 111 2333 1 11 1346899999999876531 2221111 11234444444444555543 3
Q ss_pred eeEe------eccCCCCCCC-CCCCccccCCCCCCCCcCCCCCchhHHHHHHHHHHHHhhhccccCCCCccccCCCccce
Q 003490 291 YYMY------HGGTNFGRSA-GGPFITTSYDYDAPIDEYGLIRQPKYGHLKELHRAIKMCERALVSADPIVTSLGGFQQA 363 (816)
Q Consensus 291 ~YM~------hGGTNfG~~~-G~~~~~TSYDYdAPl~E~G~~~~pKy~~lr~l~~~i~~~~~~l~~~~p~~~~lg~~~~~ 363 (816)
+-++ .||-|++... .++.++.. +. +| -.++|.|+.|..+.+||+.-...+... ........+.
T Consensus 374 w~~WNl~LD~~GGP~~~~n~~d~~iivd~-~~----~~--~~~~p~yY~~gHfSKFV~PGa~RI~st---~~~~~~~l~~ 443 (496)
T PF02055_consen 374 WIDWNLALDENGGPNWVGNFCDAPIIVDS-DT----GE--FYKQPEYYAMGHFSKFVRPGAVRIGST---SSSSDSGLEA 443 (496)
T ss_dssp EEEEESEBETTS---TT---B--SEEEEG-GG----TE--EEE-HHHHHHHHHHTTS-TT-EEEEEE---ESSSTTTEEE
T ss_pred eeeeeeecCCCCCCcccCCCCCceeEEEc-CC----Ce--EEEcHHHHHHHHHhcccCCCCEEEEee---ccCCCCceeE
Confidence 3222 4888875321 12222111 11 12 134799999999988877533322110 0011113455
Q ss_pred eeeccCCCceeeEeeecCCccc-eEEEecc-------eeeccCCcce
Q 003490 364 HVYSSESGDCAAFLSNYDTKSA-ARVLFNN-------MHYNLPPWSI 402 (816)
Q Consensus 364 ~~y~~~~~~~~~fl~n~~~~~~-~~v~~~~-------~~~~lp~~sv 402 (816)
..|...+++-++-|.|-..... .+|++++ ..+.||+.|+
T Consensus 444 vAF~nPDGs~vvVv~N~~~~~~~~~v~v~~~~~~~~~~~~~lp~~s~ 490 (496)
T PF02055_consen 444 VAFLNPDGSIVVVVLNRGDSDQNFSVTVKDGSKGNNHFNVTLPPRSI 490 (496)
T ss_dssp EEEEETTSEEEEEEEE-SSS-EEEEEEEECTTTEE--EEEEEE-TTE
T ss_pred EEEECCCCCEEEEEEcCCCCccceEEEEecCCcceeEEEEEeCCCce
Confidence 6666655666666666443322 3466643 2456777664
No 49
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=93.40 E-value=0.12 Score=59.65 Aligned_cols=96 Identities=19% Similarity=0.314 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHHCCCCEEEeceeccccCCCCce--eeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccc
Q 003490 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGN--YNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLK 134 (816)
Q Consensus 57 ~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~--ydF~g~~dl~~fi~la~~~GL~vilR~GPYicaEw~~GGlP~WL~ 134 (816)
..++++++.||++|+|+.+|-|-|...-|..+. .+=.|-..-++.|+.|.++|+.-++-. .+=-+|.||.
T Consensus 59 hrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL--------~Hfd~P~~L~ 130 (460)
T COG2723 59 HRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTL--------YHFDLPLWLQ 130 (460)
T ss_pred hhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe--------cccCCcHHHh
Confidence 357899999999999999999999999997554 887888899999999999999976653 2334799999
Q ss_pred cc-CCeEeecCChhHHHHHHHHHHHHHHHHH
Q 003490 135 YV-PGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (816)
Q Consensus 135 ~~-p~i~~Rt~d~~y~~~~~~~~~~i~~~l~ 164 (816)
+. -|-. |..-.++-.+|.+.++++++
T Consensus 131 ~~ygGW~----nR~~i~~F~~ya~~vf~~f~ 157 (460)
T COG2723 131 KPYGGWE----NRETVDAFARYAATVFERFG 157 (460)
T ss_pred hccCCcc----CHHHHHHHHHHHHHHHHHhc
Confidence 86 3532 33334444555555555554
No 50
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=93.25 E-value=14 Score=42.26 Aligned_cols=250 Identities=13% Similarity=0.148 Sum_probs=127.9
Q ss_pred eeCCCCCHhhHHHHHHHHHHCCCCEEEe-------ceeccccCCCCceeeecccch-HHHHHHHHHHcCCEEEEecCcee
Q 003490 49 IHYPRSTPDMWEDLIQKAKDGGLDVIET-------YVFWNVHEPSPGNYNFEGRYD-LVRFIKTIQKAGLYAHLRIGPYV 120 (816)
Q Consensus 49 ~Hy~R~~~~~W~d~l~k~Ka~GlNtI~t-------yvfWn~hEp~~G~ydF~g~~d-l~~fi~la~~~GL~vilR~GPYi 120 (816)
+.+.+..|+.|. +.+|++|+.-|-. +-.|+-....-..-+-.-.+| |.+|.+.|+++||.+-+=-.|
T Consensus 76 F~p~~fD~~~Wa---~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~-- 150 (384)
T smart00812 76 FTAEKFDPEEWA---DLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL-- 150 (384)
T ss_pred CCchhCCHHHHH---HHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH--
Confidence 334456777775 5678888876542 223554432211112111344 567889999999977663332
Q ss_pred eeecCCCCCCccccccCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEecccccccccccccCcccHHHH
Q 003490 121 CAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLGAAGHNYM 200 (816)
Q Consensus 121 caEw~~GGlP~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QiENEyg~~~~~~~~~~~~Y~ 200 (816)
.+|.+ |.|....+.-..+.+.+.|.++++.|+.+|.+.|.++ ||-|++- +-..+.. ...--+
T Consensus 151 -~DW~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Y-------gpd~lWf-D~~~~~~------~~~~~~ 212 (384)
T smart00812 151 -FDWFN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRY-------KPDLLWF-DGGWEAP------DDYWRS 212 (384)
T ss_pred -HHhCC---CccccccccccccccchhHHHHHHHHHHHHHHHHhcC-------CCceEEE-eCCCCCc------cchhcH
Confidence 37764 4443221111233456788888888888888888743 3444441 2111110 111124
Q ss_pred HHHHHHHHHcCCCc-ceeecCCCCCCCccccCCCCCc--c-CCCCCCC-CCCCce-eeecccccccccCC-CCCcCCHHH
Q 003490 201 TWAAKMAVEMGTGV-PWVMCKEEDAPDPVINSCNGFY--C-DAFTPNQ-PYKPTI-WTEAWSGWFTEFGG-PIHQRPVQD 273 (816)
Q Consensus 201 ~~l~~~~~~~g~~v-p~~~~~~~~~~~~vi~t~ng~~--~-~~~~~~~-p~~P~~-~tE~w~Gwf~~wG~-~~~~r~~~d 273 (816)
+.+.++++++.-+. -.+.++.-. . ..+. .|.+ + +...+.. ...|.- ++=.-.+|+=+-++ ....+++++
T Consensus 213 ~~l~~~~~~~qP~~~~vvvn~R~~-~--~~~~-~g~~~~~~e~~~p~~~~~~pwE~~~ti~~sWgy~~~~~~~~~ks~~~ 288 (384)
T smart00812 213 KEFLAWLYNLSPVKDTVVVNDRWG-G--TGCK-HGGFYTDEERGAPGKLLPHPWETCTTIGKSWGYRRNESDSDYKSPKE 288 (384)
T ss_pred HHHHHHHHHhCCCCceEEEEcccc-c--cCCC-CCCcccCcccCCCCCCCCCCcccccccCCCCCcCCCCCcccCCCHHH
Confidence 45667777654442 012222210 0 0000 0111 1 1111111 111210 01011244433333 233679999
Q ss_pred HHHHHHHHHHhCCeeeeeeEeeccCCCCCCCCCCCccccCCCCCCCCcCCCCCchhHHHHHHHHHHHHhhhccccCC
Q 003490 274 LAFAAARFIQKGGSFINYYMYHGGTNFGRSAGGPFITTSYDYDAPIDEYGLIRQPKYGHLKELHRAIKMCERALVSA 350 (816)
Q Consensus 274 ~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~TSYDYdAPl~E~G~~~~pKy~~lr~l~~~i~~~~~~l~~~ 350 (816)
+...+.+..++|++++ +| -+-+.+|.+....-..|+++.+.++...+++-.+
T Consensus 289 li~~l~~~Vsk~GnlL-------------LN------------VgP~~dG~ip~~~~~~L~~iG~Wl~~ngeaIy~t 340 (384)
T smart00812 289 LIRDLVDIVSKGGNLL-------------LN------------VGPKADGTIPEEEEERLLEIGKWLKVNGEAIYGT 340 (384)
T ss_pred HHHHHhhhcCCCceEE-------------Ec------------cCCCCCCCCCHHHHHHHHHHHHHHHhCCceeecC
Confidence 9999999999998852 11 1345678886667778999999888766655333
No 51
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=92.45 E-value=0.66 Score=45.16 Aligned_cols=97 Identities=14% Similarity=0.178 Sum_probs=62.9
Q ss_pred HHHHHHHCCCCEEEecee-------c--cccCCCCceeeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcc
Q 003490 62 LIQKAKDGGLDVIETYVF-------W--NVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVW 132 (816)
Q Consensus 62 ~l~k~Ka~GlNtI~tyvf-------W--n~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vilR~GPYicaEw~~GGlP~W 132 (816)
-++.+|++|.|+|.++.= | .+|.+.|+- ++.-|.+++++|++.||.|++|...- --|+-.---|.|
T Consensus 5 ~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L----~~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPeW 79 (132)
T PF14871_consen 5 FVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL----KRDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPEW 79 (132)
T ss_pred HHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC----CcCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCce
Confidence 466889999999998432 2 244445543 22356899999999999999997544 223333456999
Q ss_pred ccccCCeE-------------eecCChhHHHHHHHHHHHHHHHH
Q 003490 133 LKYVPGIS-------------FRTDNEPFKRAMQGFTEKIVNLM 163 (816)
Q Consensus 133 L~~~p~i~-------------~Rt~d~~y~~~~~~~~~~i~~~l 163 (816)
+..+++=+ .-.-|.+|++.+.+-+++|+...
T Consensus 80 ~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 80 FVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred eeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 97543311 12335678877777666666544
No 52
>PRK09936 hypothetical protein; Provisional
Probab=91.68 E-value=0.76 Score=50.17 Aligned_cols=58 Identities=26% Similarity=0.438 Sum_probs=47.1
Q ss_pred CCCCHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeeccc-chHHHHHHHHHHcCCEEEEe
Q 003490 52 PRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGR-YDLVRFIKTIQKAGLYAHLR 115 (816)
Q Consensus 52 ~R~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~-~dl~~fi~la~~~GL~vilR 115 (816)
.+++++.|+.+++.+|+.|++|+= |=|... |.=||.|. -.|.+-++.|++.||.|++.
T Consensus 33 ~~~~~~qWq~~~~~~~~~G~~tLi--vQWt~y----G~~~fg~~~g~La~~l~~A~~~Gl~v~vG 91 (296)
T PRK09936 33 SQVTDTQWQGLWSQLRLQGFDTLV--VQWTRY----GDADFGGQRGWLAKRLAAAQQAGLKLVVG 91 (296)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEE--EEeeec----cCCCcccchHHHHHHHHHHHHcCCEEEEc
Confidence 468999999999999999999874 456544 11188765 58999999999999999875
No 53
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=90.80 E-value=3.2 Score=44.75 Aligned_cols=131 Identities=16% Similarity=0.225 Sum_probs=76.5
Q ss_pred HhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEE-EecCceeeeecCCCCCCcccc
Q 003490 56 PDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAH-LRIGPYVCAEWNFGGFPVWLK 134 (816)
Q Consensus 56 ~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vi-lR~GPYicaEw~~GGlP~WL~ 134 (816)
..-|++.|+.++++|++.|+.-+ +..| ..+...+++ ..++..+.++++++||.|. +.+++ .+.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~-~~~~-~~~~~~~~~-~~~~~~~~~~l~~~gl~i~~~~~~~-------~~~~~---- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSV-DETD-DRLSRLDWS-REQRLALVNAIIETGVRIPSMCLSA-------HRRFP---- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec-CCcc-chhhccCCC-HHHHHHHHHHHHHcCCCceeeecCC-------CccCc----
Confidence 35599999999999999999943 2222 223444554 3578899999999999875 44321 11111
Q ss_pred ccCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEecccccccccccccCc---ccHHHHHHHHHHHHHcC
Q 003490 135 YVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLGA---AGHNYMTWAAKMAVEMG 211 (816)
Q Consensus 135 ~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QiENEyg~~~~~~~~---~~~~Y~~~l~~~~~~~g 211 (816)
+-..|+.-+++..+.+++.++..+ .+ |.++|.+- ..++.. .....+ .-.+.++.+.+++++.|
T Consensus 81 ------l~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~-~~~~~~-~~~~~~~~~~~~~~l~~l~~~A~~~G 146 (279)
T TIGR00542 81 ------LGSKDKAVRQQGLEIMEKAIQLAR--DL----GIRTIQLA-GYDVYY-EEHDEETRRRFREGLKEAVELAARAQ 146 (279)
T ss_pred ------CCCcCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEec-Cccccc-CcCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 122355556666677777777777 32 56776542 111100 000000 12345566777777777
Q ss_pred CCc
Q 003490 212 TGV 214 (816)
Q Consensus 212 ~~v 214 (816)
+.+
T Consensus 147 v~l 149 (279)
T TIGR00542 147 VTL 149 (279)
T ss_pred CEE
Confidence 765
No 54
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=89.84 E-value=3.1 Score=50.40 Aligned_cols=152 Identities=17% Similarity=0.166 Sum_probs=77.5
Q ss_pred HHHHHCCCCEEEe-ceeccccCCCCc---------eeeecccchHHHHHHHHHHcCCEEEEecCceeee-----ecCCCC
Q 003490 64 QKAKDGGLDVIET-YVFWNVHEPSPG---------NYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCA-----EWNFGG 128 (816)
Q Consensus 64 ~k~Ka~GlNtI~t-yvfWn~hEp~~G---------~ydF~g~~dl~~fi~la~~~GL~vilR~GPYica-----Ew~~GG 128 (816)
.-+|++|+|+|+. .|+..-....=| .-.|.+..||.+||+.|+++||.|||..=+-=++ -+.+.|
T Consensus 164 dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~ 243 (613)
T TIGR01515 164 PYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDDHGLAEFDG 243 (613)
T ss_pred HHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCccchhhccCC
Confidence 6679999999997 777542111001 1134456799999999999999999984221111 122333
Q ss_pred CCccccccCC---------eEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEecc--------cccccccccc
Q 003490 129 FPVWLKYVPG---------ISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQI--------ENEYGAQSKL 191 (816)
Q Consensus 129 lP~WL~~~p~---------i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~Qi--------ENEyg~~~~~ 191 (816)
.|.|...++. ..+-..+|..++++...++..++...--.+-..--..++..+- .||++..
T Consensus 244 ~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~--- 320 (613)
T TIGR01515 244 TPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGR--- 320 (613)
T ss_pred CcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhccccccccccccccCCc---
Confidence 4444332211 1233344544443333333333321100111111122332221 2444321
Q ss_pred cCcccHHHHHHHHHHHHHcCCCcceee
Q 003490 192 LGAAGHNYMTWAAKMAVEMGTGVPWVM 218 (816)
Q Consensus 192 ~~~~~~~Y~~~l~~~~~~~g~~vp~~~ 218 (816)
.......|++.+.+.+++..-++-+|.
T Consensus 321 ~~~~~~~fl~~~~~~v~~~~p~~~lia 347 (613)
T TIGR01515 321 ENLEAVDFLRKLNQTVYEAFPGVVTIA 347 (613)
T ss_pred CChHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 112357899999999988776665554
No 55
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=89.57 E-value=4.2 Score=47.96 Aligned_cols=150 Identities=15% Similarity=0.237 Sum_probs=96.3
Q ss_pred CeEEECCEEeEEEEEEeeCC-----CCCHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHH
Q 003490 33 KALLINGQRRILFSGSIHYP-----RSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQK 107 (816)
Q Consensus 33 ~~~~idG~~~~l~sG~~Hy~-----R~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~ 107 (816)
..|.|||.|.++.++.--+. |.+-+.=+-.|+.++++|+|++++ |.. |-..-+.|-++|.+
T Consensus 328 fyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRV---WGG-----------GvYEsd~FY~lad~ 393 (867)
T KOG2230|consen 328 FYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRV---WGG-----------GVYESDYFYQLADS 393 (867)
T ss_pred eEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEE---ecC-----------ccccchhHHHHhhh
Confidence 46889999999988875442 234455566799999999999998 443 33457899999999
Q ss_pred cCCEEEEecCceeeeecCCCCCCccccccCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEecc--cccc
Q 003490 108 AGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQI--ENEY 185 (816)
Q Consensus 108 ~GL~vilR~GPYicaEw~~GGlP~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~Qi--ENEy 185 (816)
.||.|--.. =+.||= =-.|..|+..++.=++.=+.+|+.+| .||.+-= |||=
T Consensus 394 lGilVWQD~-MFACAl------------------YPt~~eFl~sv~eEV~yn~~Rls~Hp-------SviIfsgNNENEa 447 (867)
T KOG2230|consen 394 LGILVWQDM-MFACAL------------------YPTNDEFLSSVREEVRYNAMRLSHHP-------SVIIFSGNNENEA 447 (867)
T ss_pred ccceehhhh-HHHhhc------------------ccCcHHHHHHHHHHHHHHHHhhccCC-------eEEEEeCCCccHH
Confidence 999775332 133433 22467899988888777777777444 6776654 5552
Q ss_pred cccccccC---cc----cHHHH----HHHHHHHHHcCCCcceeecCCC
Q 003490 186 GAQSKLLG---AA----GHNYM----TWAAKMAVEMGTGVPWVMCKEE 222 (816)
Q Consensus 186 g~~~~~~~---~~----~~~Y~----~~l~~~~~~~g~~vp~~~~~~~ 222 (816)
.-.+.-|+ +. -+.|. +-++++...-.-..|.+|...+
T Consensus 448 Al~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SSPs 495 (867)
T KOG2230|consen 448 ALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSSPS 495 (867)
T ss_pred HHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecCCC
Confidence 11111122 11 23443 3355555555567798887653
No 56
>smart00642 Aamy Alpha-amylase domain.
Probab=87.81 E-value=1.3 Score=44.68 Aligned_cols=67 Identities=13% Similarity=0.146 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHCCCCEEEeceeccccC-------CCCcee-----eecccchHHHHHHHHHHcCCEEEEecCceeeee
Q 003490 57 DMWEDLIQKAKDGGLDVIETYVFWNVHE-------PSPGNY-----NFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAE 123 (816)
Q Consensus 57 ~~W~d~l~k~Ka~GlNtI~tyvfWn~hE-------p~~G~y-----dF~g~~dl~~fi~la~~~GL~vilR~GPYicaE 123 (816)
+-+.+.|.-+|++|+|+|..-=++..-+ -.+..| .|....||.+|++.|+++||.||+..=|-=++.
T Consensus 19 ~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 19 QGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 3456667779999999999743322211 122222 455668999999999999999999875444444
No 57
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=87.34 E-value=4.8 Score=43.11 Aligned_cols=130 Identities=18% Similarity=0.268 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEE-EecCceeeeecCCCCCCcccccc
Q 003490 58 MWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAH-LRIGPYVCAEWNFGGFPVWLKYV 136 (816)
Q Consensus 58 ~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vi-lR~GPYicaEw~~GGlP~WL~~~ 136 (816)
-|++.++.++++|++.|+..+. ..|+. ....+|+ ..++..+-++++++||.|. +.++ +.-.+
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~-~~~~~-~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~----------~~~~~---- 79 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVD-ESDER-LARLDWS-KEERLSLVKAIYETGVRIPSMCLS----------GHRRF---- 79 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecC-Ccccc-cccccCC-HHHHHHHHHHHHHcCCCceEEecc----------cccCc----
Confidence 5999999999999999999532 22220 1122333 3478999999999999875 3322 11000
Q ss_pred CCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEecccccccccc--cccCcccHHHHHHHHHHHHHcCCCc
Q 003490 137 PGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQS--KLLGAAGHNYMTWAAKMAVEMGTGV 214 (816)
Q Consensus 137 p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QiENEyg~~~--~~~~~~~~~Y~~~l~~~~~~~g~~v 214 (816)
.+.+.|+..+++..+.++++++..+ .| |.+.|.+---..+.... ..+ ..-.+.++.+.+++++.|+.+
T Consensus 80 ---~~~~~d~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~l 149 (284)
T PRK13210 80 ---PFGSRDPATRERALEIMKKAIRLAQ--DL----GIRTIQLAGYDVYYEEKSEETR-QRFIEGLAWAVEQAAAAQVML 149 (284)
T ss_pred ---CCCCCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEECCcccccccccHHHH-HHHHHHHHHHHHHHHHhCCEE
Confidence 1234566666666666777777666 32 45666542000000000 000 112356778888888888765
No 58
>PRK14706 glycogen branching enzyme; Provisional
Probab=87.12 E-value=9.2 Score=46.71 Aligned_cols=54 Identities=13% Similarity=0.130 Sum_probs=35.8
Q ss_pred HHHHHHCCCCEEEe-cee-------ccccCC--CCceeeecccchHHHHHHHHHHcCCEEEEec
Q 003490 63 IQKAKDGGLDVIET-YVF-------WNVHEP--SPGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (816)
Q Consensus 63 l~k~Ka~GlNtI~t-yvf-------Wn~hEp--~~G~ydF~g~~dl~~fi~la~~~GL~vilR~ 116 (816)
+.-+|++|+|+|+. .|. |.+.-- -.=.=.|....||.+|++.|.++||.|||..
T Consensus 174 ~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 174 GEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 35689999999995 332 322100 0000113345799999999999999999884
No 59
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=86.92 E-value=11 Score=46.61 Aligned_cols=63 Identities=14% Similarity=0.203 Sum_probs=44.6
Q ss_pred HhhHHHHHHHHHHCCCCEEEe-cee-------ccccCCC--CceeeecccchHHHHHHHHHHcCCEEEEecCc
Q 003490 56 PDMWEDLIQKAKDGGLDVIET-YVF-------WNVHEPS--PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGP 118 (816)
Q Consensus 56 ~~~W~d~l~k~Ka~GlNtI~t-yvf-------Wn~hEp~--~G~ydF~g~~dl~~fi~la~~~GL~vilR~GP 118 (816)
.+.|++.|..+|++|+|+|+. .|+ |.++-.. .=.-.|.+..||.+||+.|+++||.|||..=|
T Consensus 250 ~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~ 322 (758)
T PLN02447 250 REFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDVVH 322 (758)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 456888999999999999995 232 3332100 00113455679999999999999999998533
No 60
>PRK05402 glycogen branching enzyme; Provisional
Probab=85.96 E-value=7.4 Score=48.21 Aligned_cols=54 Identities=22% Similarity=0.279 Sum_probs=37.1
Q ss_pred HHHHHHCCCCEEEe-ceecc----ccCCCCcee-----eecccchHHHHHHHHHHcCCEEEEec
Q 003490 63 IQKAKDGGLDVIET-YVFWN----VHEPSPGNY-----NFEGRYDLVRFIKTIQKAGLYAHLRI 116 (816)
Q Consensus 63 l~k~Ka~GlNtI~t-yvfWn----~hEp~~G~y-----dF~g~~dl~~fi~la~~~GL~vilR~ 116 (816)
|.-+|++|+|+|+. .|+=. .|-..+..| .|.+..||.+||+.|+++||.|||..
T Consensus 272 ~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 272 IPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 36669999999996 55411 111111111 24456799999999999999999984
No 61
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=85.16 E-value=8.1 Score=42.92 Aligned_cols=118 Identities=18% Similarity=0.230 Sum_probs=71.4
Q ss_pred CHhhHHHHHHHHHHCCCCEEEeceeccc-------cCCC-------CceeeecccchHHHHHHHHHHcCCEEEEecCcee
Q 003490 55 TPDMWEDLIQKAKDGGLDVIETYVFWNV-------HEPS-------PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYV 120 (816)
Q Consensus 55 ~~~~W~d~l~k~Ka~GlNtI~tyvfWn~-------hEp~-------~G~ydF~g~~dl~~fi~la~~~GL~vilR~GPYi 120 (816)
.++.=++.|++++++|||+|=.-|.+.. .+|. +|. + -|-.-|..+|+.|++.||.|+.+. .+-
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~-~-pg~DpL~~~I~eaHkrGlevHAW~-~~~ 93 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGK-D-PGFDPLEFMIEEAHKRGLEVHAWF-RVG 93 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCC-C-CCccHHHHHHHHHHHcCCEEEEEE-Eee
Confidence 6788889999999999999976555322 1221 111 0 012279999999999999999775 111
Q ss_pred eeecCC----CCCCcccc-ccCCeEeec----CCh----hHHHHHHHHHHHHHHHH-HhcccccccCCceEEecccc
Q 003490 121 CAEWNF----GGFPVWLK-YVPGISFRT----DNE----PFKRAMQGFTEKIVNLM-KSENLFESQGGPIILSQIEN 183 (816)
Q Consensus 121 caEw~~----GGlP~WL~-~~p~i~~Rt----~d~----~y~~~~~~~~~~i~~~l-~~~~l~~~~gGpII~~QiEN 183 (816)
-.--+. -.-|.|+. +.++..... .+. +-..+|+.|+..++..| +++ +|=++|++-
T Consensus 94 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Y--------dvDGIhlDd 162 (311)
T PF02638_consen 94 FNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNY--------DVDGIHLDD 162 (311)
T ss_pred cCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcC--------CCCeEEecc
Confidence 110011 12478875 456643333 111 23567888877777554 533 355678773
No 62
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=83.92 E-value=0.76 Score=53.03 Aligned_cols=157 Identities=15% Similarity=0.183 Sum_probs=102.3
Q ss_pred eEEECCEEeEEEEEEeeCCCCCHhhHHHHHHHHHHCCCCEEEeceecccc-CCC---Cceeee-cccchHHHHHHHHHHc
Q 003490 34 ALLINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVH-EPS---PGNYNF-EGRYDLVRFIKTIQKA 108 (816)
Q Consensus 34 ~~~idG~~~~l~sG~~Hy~R~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~h-Ep~---~G~ydF-~g~~dl~~fi~la~~~ 108 (816)
.|.++++++..++..--++++--++=+++|+-|+.+|+++++.. -+- |+- +|.-+- ++..-++.|++.|.++
T Consensus 3 ~F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~f---iLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l 79 (587)
T COG3934 3 VFALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLF---ILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYL 79 (587)
T ss_pred eEEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEE---EecCcchhhhhceecccccHHHHHHHhhhcccC
Confidence 37788888877777666777777777888999999999999985 344 552 332222 2345789999999999
Q ss_pred CCEEEEecCceeeeecCCCCCCc---ccc-ccCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEeccccc
Q 003490 109 GLYAHLRIGPYVCAEWNFGGFPV---WLK-YVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENE 184 (816)
Q Consensus 109 GL~vilR~GPYicaEw~~GGlP~---WL~-~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QiENE 184 (816)
+|.|+++. |..==.+||.=. |-- +.|+-. --|+.++..-++|...+++-.|. ...|.+|-+-||
T Consensus 80 ~lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~--iyD~k~~~~~kkyvedlVk~yk~-------~ptI~gw~l~Ne 147 (587)
T COG3934 80 DLKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNV--IYDPKFRGPGKKYVEDLVKPYKL-------DPTIAGWALRNE 147 (587)
T ss_pred cceEEEEE---eecccccCcceeEeecCCCCCcccc--ccchhhcccHHHHHHHHhhhhcc-------ChHHHHHHhcCC
Confidence 99998773 222112344321 221 112211 12566666667788777775553 347888889999
Q ss_pred ccccccccCcccHHHHHHHHHHHH
Q 003490 185 YGAQSKLLGAAGHNYMTWAAKMAV 208 (816)
Q Consensus 185 yg~~~~~~~~~~~~Y~~~l~~~~~ 208 (816)
.... -...+..+++|++.|..
T Consensus 148 --~lv~-~p~s~N~f~~w~~emy~ 168 (587)
T COG3934 148 --PLVE-APISVNNFWDWSGEMYA 168 (587)
T ss_pred --cccc-ccCChhHHHHHHHHHHH
Confidence 3221 12357789999999974
No 63
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=83.45 E-value=2.3 Score=48.15 Aligned_cols=71 Identities=23% Similarity=0.234 Sum_probs=47.0
Q ss_pred EEEEeeCCCCCHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEEEecCceee
Q 003490 45 FSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVC 121 (816)
Q Consensus 45 ~sG~~Hy~R~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vilR~GPYic 121 (816)
++=|+.+...+.+.....|++|++.|+..|=| ++|.|+...=+. ...+..++++|+++||.|++.+.|=+.
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFT----SL~ipe~~~~~~--~~~~~~l~~~a~~~~~~v~~Disp~~l 72 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFT----SLHIPEDDPEDY--LERLKELLKLAKELGMEVIADISPKVL 72 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEE----EE---------H--HHHHHHHHHHHHHCT-EEEEEE-CCHH
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEC----CCCcCCCCHHHH--HHHHHHHHHHHHHCCCEEEEECCHHHH
Confidence 45567777778999999999999999976655 789998533111 137899999999999999999887443
No 64
>PRK01060 endonuclease IV; Provisional
Probab=83.40 E-value=23 Score=38.02 Aligned_cols=93 Identities=15% Similarity=0.239 Sum_probs=60.7
Q ss_pred HHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEE---EEecCceeeeecCCCCCCccccc
Q 003490 59 WEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYA---HLRIGPYVCAEWNFGGFPVWLKY 135 (816)
Q Consensus 59 W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~v---ilR~GPYicaEw~~GGlP~WL~~ 135 (816)
+++.|++++++|++.||..+- +-|.-.++.++- .++.++-++++++||.+ .+ -+||.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~-~p~~~~~~~~~~---~~~~~lk~~~~~~gl~~~~~~~-h~~~~--------------- 73 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTG-NPQQWKRKPLEE---LNIEAFKAACEKYGISPEDILV-HAPYL--------------- 73 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECC-CCCCCcCCCCCH---HHHHHHHHHHHHcCCCCCceEE-ecceE---------------
Confidence 889999999999999998542 112222222222 26888999999999973 22 23431
Q ss_pred cCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEec
Q 003490 136 VPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQ 180 (816)
Q Consensus 136 ~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~Q 180 (816)
+.+-+.|+..+++..+.+++.++..+ .+ |.++|.+.
T Consensus 74 ---~nl~~~d~~~r~~s~~~~~~~i~~A~--~l----ga~~vv~h 109 (281)
T PRK01060 74 ---INLGNPNKEILEKSRDFLIQEIERCA--AL----GAKLLVFH 109 (281)
T ss_pred ---ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12335577778887777888777766 33 45555553
No 65
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=82.54 E-value=2.6 Score=42.35 Aligned_cols=124 Identities=15% Similarity=0.134 Sum_probs=73.3
Q ss_pred HHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccccccCCeEee
Q 003490 63 IQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFR 142 (816)
Q Consensus 63 l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vilR~GPYicaEw~~GGlP~WL~~~p~i~~R 142 (816)
|+.++++|++.|+............ ..+++++.++++++||.+..--.+.. +.. +....+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~~---~~~----------~~~~~~ 60 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPTN---FWS----------PDEENG 60 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEES---SSC----------TGTTST
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEecccc---ccc----------cccccc
Confidence 6789999999999865533322211 34799999999999999653321110 100 111133
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEeccc--ccccccc--cccCcccHHHHHHHHHHHHHcCCCc
Q 003490 143 TDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIE--NEYGAQS--KLLGAAGHNYMTWAAKMAVEMGTGV 214 (816)
Q Consensus 143 t~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QiE--NEyg~~~--~~~~~~~~~Y~~~l~~~~~~~g~~v 214 (816)
+.+++ .+...+.+.+.++..+ .+ |.+.|.+..- +...... ..+ +.-.+.++.+.+.+++.|+.+
T Consensus 61 ~~~~~-r~~~~~~~~~~i~~a~--~l----g~~~i~~~~g~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~i 128 (213)
T PF01261_consen 61 SANDE-REEALEYLKKAIDLAK--RL----GAKYIVVHSGRYPSGPEDDTEENW-ERLAENLRELAEIAEEYGVRI 128 (213)
T ss_dssp TSSSH-HHHHHHHHHHHHHHHH--HH----TBSEEEEECTTESSSTTSSHHHHH-HHHHHHHHHHHHHHHHHTSEE
T ss_pred Ccchh-hHHHHHHHHHHHHHHH--Hh----CCCceeecCcccccccCCCHHHHH-HHHHHHHHHHHhhhhhhcceE
Confidence 44444 7777778888888887 33 5677777643 1211110 000 123456777888888888654
No 66
>PRK12568 glycogen branching enzyme; Provisional
Probab=82.21 E-value=23 Score=43.92 Aligned_cols=56 Identities=23% Similarity=0.390 Sum_probs=39.3
Q ss_pred HHHHHHHHCCCCEEEe-cee-------ccccCCCCcee----eecccchHHHHHHHHHHcCCEEEEecCc
Q 003490 61 DLIQKAKDGGLDVIET-YVF-------WNVHEPSPGNY----NFEGRYDLVRFIKTIQKAGLYAHLRIGP 118 (816)
Q Consensus 61 d~l~k~Ka~GlNtI~t-yvf-------Wn~hEp~~G~y----dF~g~~dl~~fi~la~~~GL~vilR~GP 118 (816)
+.|.-+|++|+|+|+. .|+ |.+. | -|-| .|....||.+|++.|+++||.|||..=|
T Consensus 274 ~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~-~-~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 274 QLIPYVQQLGFTHIELLPITEHPFGGSWGYQ-P-LGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHHcCCCEEEECccccCCCCCCCCCC-C-CcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3467789999999995 443 3221 0 0111 3455679999999999999999998533
No 67
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=82.04 E-value=11 Score=40.45 Aligned_cols=97 Identities=12% Similarity=0.151 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHc-CCEEEEecCceeeeecCCCCCCccccc
Q 003490 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKA-GLYAHLRIGPYVCAEWNFGGFPVWLKY 135 (816)
Q Consensus 57 ~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~-GL~vilR~GPYicaEw~~GGlP~WL~~ 135 (816)
.-|++.|+.+|++|++.|+.-+....-... ......++.++.++++++ ++.+.+- +||.
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~i~~~-~~~~--------------- 69 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLS----RPLKKERAEKFKAIAEEGPSICLSVH-APYL--------------- 69 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCC----CCCCHHHHHHHHHHHHHcCCCcEEEE-cCce---------------
Confidence 669999999999999999986643211110 111346899999999999 6665543 2331
Q ss_pred cCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEeccc
Q 003490 136 VPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIE 182 (816)
Q Consensus 136 ~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QiE 182 (816)
..+.+.++.-+++....+++.++..+ .+ |-+.|.+...
T Consensus 70 ---~~~~~~~~~~r~~~~~~~~~~i~~A~--~l----G~~~v~~~~g 107 (279)
T cd00019 70 ---INLASPDKEKREKSIERLKDEIERCE--EL----GIRLLVFHPG 107 (279)
T ss_pred ---eccCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEECCC
Confidence 11223344444554555666666666 22 4456666544
No 68
>PRK14705 glycogen branching enzyme; Provisional
Probab=81.60 E-value=22 Score=46.49 Aligned_cols=56 Identities=18% Similarity=0.234 Sum_probs=38.6
Q ss_pred HHHHHHHHCCCCEEEe-cee-------cccc--CCCCceeeecccchHHHHHHHHHHcCCEEEEec
Q 003490 61 DLIQKAKDGGLDVIET-YVF-------WNVH--EPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (816)
Q Consensus 61 d~l~k~Ka~GlNtI~t-yvf-------Wn~h--Ep~~G~ydF~g~~dl~~fi~la~~~GL~vilR~ 116 (816)
+.|.-+|++|+|+|+. .|+ |.+. -...=.=.|.+..||.+||+.|+++||.|||..
T Consensus 770 ~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 770 ELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3467889999999995 443 4221 000001124456799999999999999999984
No 69
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=80.59 E-value=4.8 Score=47.38 Aligned_cols=69 Identities=22% Similarity=0.379 Sum_probs=43.4
Q ss_pred EEEeeCCCCCHhhHHHHHHHHH-HCCCCEEEec-ee---ccc-cC-CCCc--eeeecccchHHHHHHHHHHcCCEEEEec
Q 003490 46 SGSIHYPRSTPDMWEDLIQKAK-DGGLDVIETY-VF---WNV-HE-PSPG--NYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (816)
Q Consensus 46 sG~~Hy~R~~~~~W~d~l~k~K-a~GlNtI~ty-vf---Wn~-hE-p~~G--~ydF~g~~dl~~fi~la~~~GL~vilR~ 116 (816)
-|+=|.-...++.|+..|+.++ +.||.-|++. +| ... .| ..+| .|||+ .|+.++|...+.||.-.+..
T Consensus 28 ~~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~vel 104 (486)
T PF01229_consen 28 VGSGRANLLLRADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPFVEL 104 (486)
T ss_dssp EEES-GGGGGBHHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEEEEE
T ss_pred cCCCchHHHhhHHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEEEEE
Confidence 3445555567788999999986 7899999863 22 111 11 1233 39999 89999999999999987776
Q ss_pred C
Q 003490 117 G 117 (816)
Q Consensus 117 G 117 (816)
|
T Consensus 105 ~ 105 (486)
T PF01229_consen 105 G 105 (486)
T ss_dssp -
T ss_pred E
Confidence 5
No 70
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=80.33 E-value=13 Score=39.96 Aligned_cols=125 Identities=15% Similarity=0.286 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEE-EecCceeeeecCCCCCCcccccc
Q 003490 58 MWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAH-LRIGPYVCAEWNFGGFPVWLKYV 136 (816)
Q Consensus 58 ~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vi-lR~GPYicaEw~~GGlP~WL~~~ 136 (816)
-|.+.++.++++|+..|+..+. ..|+ ....++++ ..++.++-++++++||.|. +.++.. ..++
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~-------~~~~------ 85 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSAH-------RRFP------ 85 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEecccc-------cccC------
Confidence 4999999999999999998532 1111 01122333 2368899999999999875 332211 0011
Q ss_pred CCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEecccccccccccccCc-------ccHHHHHHHHHHHHH
Q 003490 137 PGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLGA-------AGHNYMTWAAKMAVE 209 (816)
Q Consensus 137 p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QiENEyg~~~~~~~~-------~~~~Y~~~l~~~~~~ 209 (816)
+-+.|+.-++.....+++.++..+ .+ |.+.|.+. |. ...++. .-.+.++.|.+++++
T Consensus 86 ----~~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~i~~~-----~~-~~~~~~~~~~~~~~~~~~l~~l~~~A~~ 149 (283)
T PRK13209 86 ----LGSEDDAVRAQALEIMRKAIQLAQ--DL----GIRVIQLA-----GY-DVYYEQANNETRRRFIDGLKESVELASR 149 (283)
T ss_pred ----CCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEC-----Cc-cccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 113456666666777777777777 32 56776542 11 000111 113466778888888
Q ss_pred cCCCc
Q 003490 210 MGTGV 214 (816)
Q Consensus 210 ~g~~v 214 (816)
.|+.+
T Consensus 150 ~GV~i 154 (283)
T PRK13209 150 ASVTL 154 (283)
T ss_pred hCCEE
Confidence 88755
No 71
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=79.69 E-value=2.8 Score=49.20 Aligned_cols=61 Identities=8% Similarity=0.266 Sum_probs=42.9
Q ss_pred HhhHH---HHHHHHHHCCCCEEEe-ceeccc-----cCCCCce-e-------------eecccchHHHHHHHHHHcCCEE
Q 003490 56 PDMWE---DLIQKAKDGGLDVIET-YVFWNV-----HEPSPGN-Y-------------NFEGRYDLVRFIKTIQKAGLYA 112 (816)
Q Consensus 56 ~~~W~---d~l~k~Ka~GlNtI~t-yvfWn~-----hEp~~G~-y-------------dF~g~~dl~~fi~la~~~GL~v 112 (816)
.+.|. +.|.-+|++|+++|.. .++-+. |--.+-. | .|....||.++|+.|++.||+|
T Consensus 18 ~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~v 97 (479)
T PRK09441 18 GKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKV 97 (479)
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEE
Confidence 35676 4566679999999986 565442 3222222 2 2335679999999999999999
Q ss_pred EEec
Q 003490 113 HLRI 116 (816)
Q Consensus 113 ilR~ 116 (816)
|+-.
T Consensus 98 i~D~ 101 (479)
T PRK09441 98 YADV 101 (479)
T ss_pred EEEE
Confidence 9985
No 72
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=79.38 E-value=22 Score=37.56 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=34.8
Q ss_pred HHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEEE
Q 003490 59 WEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHL 114 (816)
Q Consensus 59 W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vil 114 (816)
+++.+++++++|++.|+...++ ..++..+.++++++||.+..
T Consensus 16 l~e~~~~~~e~G~~~vEl~~~~--------------~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLFPY--------------DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred HHHHHHHHHHcCCCEEEecCCc--------------cCCHHHHHHHHHHcCCeEEE
Confidence 8899999999999999984322 13688899999999999764
No 73
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=79.23 E-value=26 Score=39.47 Aligned_cols=139 Identities=16% Similarity=0.250 Sum_probs=89.3
Q ss_pred CCHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHH---HcCCEEEEecCceeeeecCCCCC-
Q 003490 54 STPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQ---KAGLYAHLRIGPYVCAEWNFGGF- 129 (816)
Q Consensus 54 ~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~---~~GL~vilR~GPYicaEw~~GGl- 129 (816)
..|+..+.-++.||+.|++.--.|-.| |.|++-|++-++..- +.+|...|. |.+.--
T Consensus 55 ~~p~v~~~Q~~lA~~~GI~gF~~~~Yw-----------f~gk~lLe~p~~~~l~~~~~d~pFcl~--------WAN~~w~ 115 (345)
T PF14307_consen 55 RDPEVMEKQAELAKEYGIDGFCFYHYW-----------FNGKRLLEKPLENLLASKEPDFPFCLC--------WANENWT 115 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEeee-----------cCCchHHHHHHHHHHhcCCCCCcEEEE--------ECCChhh
Confidence 478889999999999999999998777 446777877776654 345544554 433211
Q ss_pred CccccccCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEecccccccccccccCcccHHHHHHHHHHHHH
Q 003490 130 PVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLGAAGHNYMTWAAKMAVE 209 (816)
Q Consensus 130 P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QiENEyg~~~~~~~~~~~~Y~~~l~~~~~~ 209 (816)
=.|-.....+.+--... =.+..+++++.|++.+++..++--+|=||+++=--.+. ..-++.++.+++.+++
T Consensus 116 ~~w~g~~~~~l~~q~y~-~~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~~--------pd~~~~~~~wr~~a~~ 186 (345)
T PF14307_consen 116 RRWDGRNNEILIEQKYS-GEDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGDI--------PDIKEMIERWREEAKE 186 (345)
T ss_pred hccCCCCccccccccCC-chhHHHHHHHHHHHHhCCCCceeECCEEEEEEECcccc--------cCHHHHHHHHHHHHHH
Confidence 11222222221111111 01234677788889999877777788999987322111 2457899999999999
Q ss_pred cCCCcceeecC
Q 003490 210 MGTGVPWVMCK 220 (816)
Q Consensus 210 ~g~~vp~~~~~ 220 (816)
.|+.-+.+...
T Consensus 187 ~G~~giyii~~ 197 (345)
T PF14307_consen 187 AGLPGIYIIAV 197 (345)
T ss_pred cCCCceEEEEE
Confidence 99986655433
No 74
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=78.16 E-value=30 Score=36.89 Aligned_cols=130 Identities=15% Similarity=0.154 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccccccC
Q 003490 58 MWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVP 137 (816)
Q Consensus 58 ~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vilR~GPYicaEw~~GGlP~WL~~~p 137 (816)
-|++.|+.++++|++.|+...-. .|+-.+ +++ ..++.++-++++++||.|.. .+|. .+++|..+.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~-~~~~~~---~~~-~~~~~~l~~~~~~~gl~v~s-~~~~------~~~~~~~~~--- 78 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGR-PHAFAP---DLK-AGGIKQIKALAQTYQMPIIG-YTPE------TNGYPYNMM--- 78 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCC-cccccc---ccC-chHHHHHHHHHHHcCCeEEE-ecCc------ccCcCcccc---
Confidence 38999999999999999983210 111111 121 24788899999999998753 2221 123443322
Q ss_pred CeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEeccccc-cc-ccccccCcccHHHHHHHHHHHHHcCCCc
Q 003490 138 GISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENE-YG-AQSKLLGAAGHNYMTWAAKMAVEMGTGV 214 (816)
Q Consensus 138 ~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QiENE-yg-~~~~~~~~~~~~Y~~~l~~~~~~~g~~v 214 (816)
..++.-+++..+.+++.++.-+ . =|.+.|.+-.-.. +. .....+ +.-.+.++.|.+.+++.|+.+
T Consensus 79 -----~~~~~~r~~~~~~~~~~i~~a~--~----lGa~~i~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~l 145 (275)
T PRK09856 79 -----LGDEHMRRESLDMIKLAMDMAK--E----MNAGYTLISAAHAGYLTPPNVIW-GRLAENLSELCEYAENIGMDL 145 (275)
T ss_pred -----CCCHHHHHHHHHHHHHHHHHHH--H----hCCCEEEEcCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHcCCEE
Confidence 1234444555555556565555 2 2455554421110 00 000001 122356778888888887654
No 75
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=77.92 E-value=0.5 Score=56.34 Aligned_cols=51 Identities=18% Similarity=0.260 Sum_probs=47.6
Q ss_pred CCCCCeEeEEeeeecCCCccCCCCcCcccccCCchHHHHHhhcCCCCcccc
Q 003490 765 CSPGHTISSIKFASFGTPLGTCGSYQQGPCHSPTSYDILEKVFITALISSV 815 (816)
Q Consensus 765 C~~g~~Is~I~fAs~G~p~G~Cg~~~~g~C~~~~s~~iv~~~C~G~~~C~v 815 (816)
|.++.++..|.+|+||..+|+|+.|..+.|.++++...+.+.|..+..|+|
T Consensus 332 ~ep~lv~gd~~~~kyg~~~~~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~sl 382 (649)
T KOG0496|consen 332 CEPALVAGDITTAKYGNLREACAAFLSNNNGAPAAPVPFNKPKYRLPPWSL 382 (649)
T ss_pred cCccccccCcccccccchhhHHHHHHhcCCCCCCCccccCCCccccCceeE
Confidence 456889999999999999999999999999999999999999999999987
No 76
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=77.86 E-value=34 Score=36.44 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=38.7
Q ss_pred EeeCCCCCHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEEE
Q 003490 48 SIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHL 114 (816)
Q Consensus 48 ~~Hy~R~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vil 114 (816)
++.|-+.+ ++++|++++++|++.|+... |. ..++.++.++++++||.+..
T Consensus 9 ~~~~~~~~---l~~~l~~~a~~Gf~~VEl~~------~~--------~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 9 SMLFGEYD---FLARFEKAAQCGFRGVEFMF------PY--------DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred ehhccCCC---HHHHHHHHHHhCCCEEEEcC------CC--------CCCHHHHHHHHHHcCCcEEE
Confidence 34555555 77899999999999999831 11 14799999999999999854
No 77
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.54 E-value=15 Score=42.44 Aligned_cols=122 Identities=21% Similarity=0.321 Sum_probs=80.8
Q ss_pred CHhhHHHHHHHHHHCCCCEEEece-------------eccccCCCCceee-ecccchHHHHHHHHHHcCCEEEEecCcee
Q 003490 55 TPDMWEDLIQKAKDGGLDVIETYV-------------FWNVHEPSPGNYN-FEGRYDLVRFIKTIQKAGLYAHLRIGPYV 120 (816)
Q Consensus 55 ~~~~W~d~l~k~Ka~GlNtI~tyv-------------fWn~hEp~~G~yd-F~g~~dl~~fi~la~~~GL~vilR~GPYi 120 (816)
.++.-.+.|.+++++|+|||-.-| +|..-- ||.+- =.|..-|...|++|++.||.|+-+.=||.
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~ 139 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYR 139 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhcc
Confidence 678888999999999999997322 243332 33321 12445788889999999999999987777
Q ss_pred eeecCCC---CCCcccccc-CCeEe-ecCC-------hhHHHHHHHHHHHHH-HHHHhcccccccCCceEEeccccccc
Q 003490 121 CAEWNFG---GFPVWLKYV-PGISF-RTDN-------EPFKRAMQGFTEKIV-NLMKSENLFESQGGPIILSQIENEYG 186 (816)
Q Consensus 121 caEw~~G---GlP~WL~~~-p~i~~-Rt~d-------~~y~~~~~~~~~~i~-~~l~~~~l~~~~gGpII~~QiENEyg 186 (816)
-|=-..- --|.|+... |+... |.+. .++.-+++.|+..++ +.++++ .|=++|.+--++
T Consensus 140 ~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Y--------dvDGIQfDd~fy 210 (418)
T COG1649 140 MAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNY--------DVDGIQFDDYFY 210 (418)
T ss_pred cCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCC--------CCCceecceeec
Confidence 6532111 126777654 55433 3332 256788899888776 666644 456688877665
No 78
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=77.15 E-value=8.6 Score=42.93 Aligned_cols=109 Identities=18% Similarity=0.346 Sum_probs=69.8
Q ss_pred CHhhHHHHHHHHHHCCCCEEEe-------ceeccccCCCCceeeec-c-cchHHHHHHHHHHcCCEEEEecCcee---ee
Q 003490 55 TPDMWEDLIQKAKDGGLDVIET-------YVFWNVHEPSPGNYNFE-G-RYDLVRFIKTIQKAGLYAHLRIGPYV---CA 122 (816)
Q Consensus 55 ~~~~W~d~l~k~Ka~GlNtI~t-------yvfWn~hEp~~G~ydF~-g-~~dl~~fi~la~~~GL~vilR~GPYi---ca 122 (816)
.++.-+..|+.+|+.|+|+|-+ .|.+..-.|..-+..-. . ..|+.++++.++++|+|+|.|+==+= -|
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~la 90 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFKDPVLA 90 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEecChHHh
Confidence 4566778999999999999974 34455444443333222 2 36999999999999999999962110 01
Q ss_pred ecCCCCCCcccccc-CCeEeecCC-----hhHHHHHHHHHHHHHHHHHhcc
Q 003490 123 EWNFGGFPVWLKYV-PGISFRTDN-----EPFKRAMQGFTEKIVNLMKSEN 167 (816)
Q Consensus 123 Ew~~GGlP~WL~~~-p~i~~Rt~d-----~~y~~~~~~~~~~i~~~l~~~~ 167 (816)
+. -|.|-.+. .|-..|..+ .+|.+++.+|.-.|++.+++.+
T Consensus 91 ~~----~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~G 137 (316)
T PF13200_consen 91 EA----HPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKLG 137 (316)
T ss_pred hh----ChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHcC
Confidence 11 34444321 111122111 3689999999999999888554
No 79
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=75.91 E-value=31 Score=39.53 Aligned_cols=89 Identities=12% Similarity=0.123 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHCCCCEEEec----eeccccCCCCceeeecccchHHHHHHHHHHcCCEEEE-ecCceeeeecCCCCCCc
Q 003490 57 DMWEDLIQKAKDGGLDVIETY----VFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHL-RIGPYVCAEWNFGGFPV 131 (816)
Q Consensus 57 ~~W~d~l~k~Ka~GlNtI~ty----vfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vil-R~GPYicaEw~~GGlP~ 131 (816)
....+++++++++|++.|+.. ++|..-+.+ -..++.++-++++++||.|.. -++-+....|..|
T Consensus 32 ~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e-------~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g---- 100 (382)
T TIGR02631 32 LDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQE-------RDQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDG---- 100 (382)
T ss_pred cCHHHHHHHHHHhCCCEEEecccccCCCCCChhH-------HHHHHHHHHHHHHHhCCeEEEeeccccCCccccCC----
Confidence 345689999999999999964 222211110 023578899999999999753 3321111111111
Q ss_pred cccccCCeEeecCChhHHHHHHHHHHHHHHHHH
Q 003490 132 WLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (816)
Q Consensus 132 WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~ 164 (816)
.+-+.|+..+++.-+.+++.++.-+
T Consensus 101 --------~las~d~~vR~~ai~~~kraId~A~ 125 (382)
T TIGR02631 101 --------GFTSNDRSVRRYALRKVLRNMDLGA 125 (382)
T ss_pred --------CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2345577666665566666666665
No 80
>PRK09989 hypothetical protein; Provisional
Probab=75.52 E-value=23 Score=37.73 Aligned_cols=42 Identities=19% Similarity=0.393 Sum_probs=34.0
Q ss_pred HHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEEE
Q 003490 59 WEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHL 114 (816)
Q Consensus 59 W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vil 114 (816)
.+++|++++++|++.|+...+|. .+..+..++.+++||.|..
T Consensus 17 l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 17 FIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred HHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEE
Confidence 67899999999999999844332 2467888889999999874
No 81
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=75.51 E-value=2.8 Score=44.68 Aligned_cols=56 Identities=20% Similarity=0.269 Sum_probs=39.0
Q ss_pred HHHHHHHHCCCCEEEeceeccccCCCCc--eee-------ecccchHHHHHHHHHHcCCEEEEec
Q 003490 61 DLIQKAKDGGLDVIETYVFWNVHEPSPG--NYN-------FEGRYDLVRFIKTIQKAGLYAHLRI 116 (816)
Q Consensus 61 d~l~k~Ka~GlNtI~tyvfWn~hEp~~G--~yd-------F~g~~dl~~fi~la~~~GL~vilR~ 116 (816)
+.|.-+|++|+|+|..-=++...+.--| .-| |.+..||.++|+.|++.||.|||-.
T Consensus 8 ~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 8 DKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 5678899999999997544332211111 112 2345799999999999999999885
No 82
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=74.93 E-value=12 Score=49.14 Aligned_cols=112 Identities=17% Similarity=0.305 Sum_probs=69.4
Q ss_pred EEECCEEeEEEEE---EeeCCCC--CHhhHHHHHHHHHHCCCCEEEe-cee-ccc---cCCCCceee----e----cccc
Q 003490 35 LLINGQRRILFSG---SIHYPRS--TPDMWEDLIQKAKDGGLDVIET-YVF-WNV---HEPSPGNYN----F----EGRY 96 (816)
Q Consensus 35 ~~idG~~~~l~sG---~~Hy~R~--~~~~W~d~l~k~Ka~GlNtI~t-yvf-Wn~---hEp~~G~yd----F----~g~~ 96 (816)
+.|||++.+.+.+ .-..++. +-+.|++.|..+|++|.|+|-. .++ =.. .=...+++. | .|..
T Consensus 105 L~i~~~~~lPl~~i~iqTvlsK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~ 184 (1464)
T TIGR01531 105 LYINADKFLPLDSIALQTVLAKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGKN 184 (1464)
T ss_pred eEECCCcccCcCceeeeeehhhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcHH
Confidence 5556633333222 2234443 5578999999999999999984 444 110 000122222 3 3667
Q ss_pred hHHHHHHHHHHc-CCEEEEecCceeeeecCCCCC-CccccccCCeEeecCChhHHHHH
Q 003490 97 DLVRFIKTIQKA-GLYAHLRIGPYVCAEWNFGGF-PVWLKYVPGISFRTDNEPFKRAM 152 (816)
Q Consensus 97 dl~~fi~la~~~-GL~vilR~GPYicaEw~~GGl-P~WL~~~p~i~~Rt~d~~y~~~~ 152 (816)
|+.++++.+++. ||.+|+.. =||+-+- =.||.+.|+.-.-..+.++|+..
T Consensus 185 d~~~lV~~~h~~~Gm~~ilDv------V~NHTa~ds~Wl~eHPEa~Yn~~~sP~L~~A 236 (1464)
T TIGR01531 185 DVQALVEKLHRDWNVLSITDI------VFNHTANNSPWLLEHPEAAYNCITSPHLRPA 236 (1464)
T ss_pred HHHHHHHHHHHhcCCEEEEEe------eecccccCCHHHHhChHhhcCCCCCchhhhH
Confidence 899999999996 99999884 2555554 34888888754445555555543
No 83
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=73.17 E-value=4.5 Score=43.46 Aligned_cols=52 Identities=21% Similarity=0.484 Sum_probs=39.2
Q ss_pred HhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEEEecC
Q 003490 56 PDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (816)
Q Consensus 56 ~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vilR~G 117 (816)
+...++-|+.+|+.||++||+ ..|..+.+ ..+..++|+.|+++|+.|+-..|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEi---------SdGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEI---------SDGTIDLP-EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEe---------cCCceeCC-HHHHHHHHHHHHHCCCEEeeccc
Confidence 566788999999999999997 45555554 34778999999999999999988
No 84
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=69.74 E-value=7.6 Score=46.47 Aligned_cols=53 Identities=25% Similarity=0.397 Sum_probs=38.9
Q ss_pred HHHHHHHHCCCCEEEe-cee-------cccc-----CCCCceeeecccchHHHHHHHHHHcCCEEEEec
Q 003490 61 DLIQKAKDGGLDVIET-YVF-------WNVH-----EPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (816)
Q Consensus 61 d~l~k~Ka~GlNtI~t-yvf-------Wn~h-----Ep~~G~ydF~g~~dl~~fi~la~~~GL~vilR~ 116 (816)
++|.-+|++|+|+|+. .|+ |.++ .+.+ .|.+..+|.+||+.|+++||.|||-.
T Consensus 115 ~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~---~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 115 EKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN---AYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4678889999999995 443 3221 1111 24456799999999999999999984
No 85
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=68.06 E-value=6.1 Score=40.05 Aligned_cols=61 Identities=21% Similarity=0.312 Sum_probs=28.4
Q ss_pred CccEEEEECCeeeeeeee-ccccCCCCCcccccCcCCCcccCCCCCcceeeeecCcccccCCcceEEEEEecC
Q 003490 644 MGKGQIWINGQSVGRYWT-AYAKGDCNGCNYVGGYRPTKCQLGCGQPTQRWYHVPRSWLKPTQNFLVVFEELG 715 (816)
Q Consensus 644 ~gKG~~wVNG~niGRYW~-~~~~g~~~~c~y~G~y~~~kc~~~cg~PqqtlYhVP~~~Lk~g~N~LVlfEe~g 715 (816)
-++=+|.||| ..+..+. .+. .++|.+|+ -+-+|..+.--+-||++.|+.|.|+|.|=-..|
T Consensus 92 ~~~~~V~vNg-~~~~~~~~~~~---~d~~~~r~-------g~~~G~~~~~~~~ipa~~L~~G~Nti~lt~~~g 153 (167)
T PF14683_consen 92 GGRLQVSVNG-WSGPFPSAPFG---NDNAIYRS-------GIHRGNYRLYEFDIPASLLKAGENTITLTVPSG 153 (167)
T ss_dssp T-EEEEEETT-EE--------------S--GGG-------T---S---EEEEEE-TTSS-SEEEEEEEEEE-S
T ss_pred CCCEEEEEcC-ccCCccccccC---CCCceeeC-------ceecccEEEEEEEEcHHHEEeccEEEEEEEccC
Confidence 3566899999 6776663 221 13344444 122344555567799999999999997644334
No 86
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=67.53 E-value=71 Score=38.54 Aligned_cols=160 Identities=16% Similarity=0.186 Sum_probs=79.8
Q ss_pred CHhhHHHHHHHHHHCCCCEEEec-eeccccCCCCcee--------eeccc----chHHHHHHHHHHcCCEEEEecCceee
Q 003490 55 TPDMWEDLIQKAKDGGLDVIETY-VFWNVHEPSPGNY--------NFEGR----YDLVRFIKTIQKAGLYAHLRIGPYVC 121 (816)
Q Consensus 55 ~~~~W~d~l~k~Ka~GlNtI~ty-vfWn~hEp~~G~y--------dF~g~----~dl~~fi~la~~~GL~vilR~GPYic 121 (816)
.++.=+..|..|+...+|.|+.| ..|..|.|.|+.= |+.++ .-+...|+.|++.||.++.=--=|-+
T Consensus 116 ~~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa 195 (559)
T PF13199_consen 116 SAEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAA 195 (559)
T ss_dssp GHHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEE
T ss_pred CchhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhcc
Confidence 34567789999999999999999 7799999987533 22332 35789999999999998854322322
Q ss_pred eec--CCCCCCccccc-cCC------eEe--------e---cCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEecc
Q 003490 122 AEW--NFGGFPVWLKY-VPG------ISF--------R---TDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQI 181 (816)
Q Consensus 122 aEw--~~GGlP~WL~~-~p~------i~~--------R---t~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~Qi 181 (816)
-+. ..|=.|.|.+. +++ ..+ . -.|+.+.++...=+.+.++.+.=-..+.++=|++--+
T Consensus 196 ~~~~~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~-- 273 (559)
T PF13199_consen 196 NNNYEEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTV-- 273 (559)
T ss_dssp ETT--S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHHHHHHHHHHHHT--EEEEE-S--EEEE--
T ss_pred ccCcccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHHHHHHHHHHccCCceEeeeccCCCCcc--
Confidence 222 35667888863 221 011 1 1245555554444444444332112344444444333
Q ss_pred cccccccccccCcccHHHHHHHHHHHHHcCCCcceeecC
Q 003490 182 ENEYGAQSKLLGAAGHNYMTWAAKMAVEMGTGVPWVMCK 220 (816)
Q Consensus 182 ENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~vp~~~~~ 220 (816)
.+.-|.... .-...|...|.++-..+ -+.+++++.
T Consensus 274 ~d~~G~~i~---~l~~~y~~Fi~~~K~~~-~~k~lv~N~ 308 (559)
T PF13199_consen 274 YDYDGNKIY---DLSDGYASFINAMKEAL-PDKYLVFNA 308 (559)
T ss_dssp GGTT---GG---ECHHHHHHHHHHHHHHS-TTSEEEEB-
T ss_pred ccCCCCCch---hhHHHHHHHHHHHHHhC-CCCceeeec
Confidence 222222100 12456777777766554 456676643
No 87
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=66.11 E-value=14 Score=40.53 Aligned_cols=68 Identities=12% Similarity=0.160 Sum_probs=48.8
Q ss_pred CCHhhHHHHHHHHHHCCCCEEEeceeccccCCC-Cceeeeccc--chHHHHHHHHHHcCCEEEEecCceee
Q 003490 54 STPDMWEDLIQKAKDGGLDVIETYVFWNVHEPS-PGNYNFEGR--YDLVRFIKTIQKAGLYAHLRIGPYVC 121 (816)
Q Consensus 54 ~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~-~G~ydF~g~--~dl~~fi~la~~~GL~vilR~GPYic 121 (816)
...+...+.++++|+.|+..=...+-...+... -+.|.|.-. -|..++++..+++|+++++..=|+|+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~ 91 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIA 91 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCC
Confidence 367778999999999996654444443333322 235655533 28999999999999999999877774
No 88
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=64.87 E-value=91 Score=33.26 Aligned_cols=101 Identities=11% Similarity=0.149 Sum_probs=64.2
Q ss_pred EEeeCCCCCHhhHHHHHHHHHHCCCCEEEeceeccccCCCCcee-eecccchHHHHHHHHHHcCCEEEEecCceeeeecC
Q 003490 47 GSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNY-NFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWN 125 (816)
Q Consensus 47 G~~Hy~R~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~y-dF~g~~dl~~fi~la~~~GL~vilR~GPYicaEw~ 125 (816)
|..+..+-+ -.+.|+++.+.|++.|+.. ..+|..-.- +++ ..++.++-++++++||.+.+- +||.
T Consensus 3 g~~~~~~~~---~~~~~~~~~~~G~~~vel~----~~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~h-~p~~----- 68 (273)
T smart00518 3 GAHVSAAGG---LYKAFIEAVDIGARSFQLF----LGNPRSWKGVRLS-EETAEKFKEALKENNIDVSVH-APYL----- 68 (273)
T ss_pred eEEEcccCc---HhHHHHHHHHcCCCEEEEE----CCCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEEE-CCce-----
Confidence 444444544 3378999999999999983 333322100 122 236889999999999986542 3432
Q ss_pred CCCCCccccccCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEec
Q 003490 126 FGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQ 180 (816)
Q Consensus 126 ~GGlP~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~Q 180 (816)
+.+.+.|+..+++..+++++.++..+ .+ |.++|.+.
T Consensus 69 -------------~nl~s~d~~~r~~~~~~l~~~i~~A~--~l----Ga~~vv~h 104 (273)
T smart00518 69 -------------INLASPDKEKVEKSIERLIDEIKRCE--EL----GIKALVFH 104 (273)
T ss_pred -------------ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12446677777777778888887776 33 55666553
No 89
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=64.26 E-value=27 Score=38.09 Aligned_cols=81 Identities=20% Similarity=0.346 Sum_probs=62.2
Q ss_pred eeEEEecCeEEECCEEeEEEEEE--eeCCCCCHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeec--ccchHHHH
Q 003490 26 CSVTYDRKALLINGQRRILFSGS--IHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFE--GRYDLVRF 101 (816)
Q Consensus 26 ~~v~~d~~~~~idG~~~~l~sG~--~Hy~R~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~--g~~dl~~f 101 (816)
..|... .+.+.+.|++++.|= +| .++.-.+.-+++|++|+..++.|.|=+...| +.|. |...+..+
T Consensus 14 ~~~~~~--~~~~g~~~~~~iaGPCsie----~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~----~s~~G~g~~gl~~l 83 (266)
T PRK13398 14 TIVKVG--DVVIGGEEKIIIAGPCAVE----SEEQMVKVAEKLKELGVHMLRGGAFKPRTSP----YSFQGLGEEGLKIL 83 (266)
T ss_pred cEEEEC--CEEEcCCCEEEEEeCCcCC----CHHHHHHHHHHHHHcCCCEEEEeeecCCCCC----CccCCcHHHHHHHH
Confidence 345543 367777788888882 32 5778888999999999999999988744443 3666 57889999
Q ss_pred HHHHHHcCCEEEEec
Q 003490 102 IKTIQKAGLYAHLRI 116 (816)
Q Consensus 102 i~la~~~GL~vilR~ 116 (816)
-+.+++.||.++-.|
T Consensus 84 ~~~~~~~Gl~~~te~ 98 (266)
T PRK13398 84 KEVGDKYNLPVVTEV 98 (266)
T ss_pred HHHHHHcCCCEEEee
Confidence 999999999988775
No 90
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=64.14 E-value=72 Score=34.98 Aligned_cols=65 Identities=14% Similarity=0.256 Sum_probs=47.9
Q ss_pred CHhhHHHHHHHHHHCCCCEEEeceeccccCC--------CCceeeeccc--chHHHHHHHHHHcCCEEEEecCce
Q 003490 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEP--------SPGNYNFEGR--YDLVRFIKTIQKAGLYAHLRIGPY 119 (816)
Q Consensus 55 ~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp--------~~G~ydF~g~--~dl~~fi~la~~~GL~vilR~GPY 119 (816)
+.+.-++.++++++.||-.=.+++-...|.- .-+.|+|+-. -|..++++..++.|+++++-+=|+
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~ 97 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPA 97 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCC
Confidence 6677789999999999877666554444331 2356777643 399999999999999999886443
No 91
>PRK12313 glycogen branching enzyme; Provisional
Probab=63.86 E-value=12 Score=45.57 Aligned_cols=55 Identities=16% Similarity=0.287 Sum_probs=38.1
Q ss_pred HHHHHHHCCCCEEEe-cee-------ccccCC--CCceeeecccchHHHHHHHHHHcCCEEEEec
Q 003490 62 LIQKAKDGGLDVIET-YVF-------WNVHEP--SPGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (816)
Q Consensus 62 ~l~k~Ka~GlNtI~t-yvf-------Wn~hEp--~~G~ydF~g~~dl~~fi~la~~~GL~vilR~ 116 (816)
.|.-+|++|+|+|+. .|+ |.+.-. ..=.-.|.+..||.+||+.|+++||.|||-.
T Consensus 176 ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 176 LIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 358889999999994 553 211000 0001135566799999999999999999984
No 92
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=63.39 E-value=13 Score=33.16 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=33.4
Q ss_pred ceEEeCCcceEEEEEECCEEEEEEEcccccceeEEEeeeec-cCCCcEEEEEEecCCc
Q 003490 493 PTLIVQSTGHALHIFINGQLSGSAFGTREARRFMYTGKVNL-RAGRNKIALLSVAVGL 549 (816)
Q Consensus 493 ~~L~v~~~~d~~~vfVNg~~vG~~~~~~~~~~~~~~~~i~l-~~G~n~L~ILven~Gr 549 (816)
..|++.+-...++-||||+++|.....+ .+. ..+ ..|.++|++ +...|+
T Consensus 34 l~l~a~~~~~~~~W~vdg~~~g~~~~~~---~~~----~~~~~~G~h~l~v-vD~~G~ 83 (89)
T PF06832_consen 34 LVLKAAGGRGPVYWFVDGEPLGTTQPGH---QLF----WQPDRPGEHTLTV-VDAQGR 83 (89)
T ss_pred EEEEEeCCCCcEEEEECCEEcccCCCCC---eEE----eCCCCCeeEEEEE-EcCCCC
Confidence 3566655566999999999998765432 222 334 779998887 666665
No 93
>PLN02960 alpha-amylase
Probab=62.58 E-value=2.1e+02 Score=36.47 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=39.7
Q ss_pred HHHHHHHHHCCCCEEEe-cee-------ccccCC--CCceeeecccchHHHHHHHHHHcCCEEEEec
Q 003490 60 EDLIQKAKDGGLDVIET-YVF-------WNVHEP--SPGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (816)
Q Consensus 60 ~d~l~k~Ka~GlNtI~t-yvf-------Wn~hEp--~~G~ydF~g~~dl~~fi~la~~~GL~vilR~ 116 (816)
+++|.-+|++|+|+|+. .|+ |.+.-. -.=.-.|....||.+||+.|+++||.|||..
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 35688999999999996 443 332100 0001123455799999999999999999985
No 94
>PRK09505 malS alpha-amylase; Reviewed
Probab=62.09 E-value=14 Score=45.47 Aligned_cols=58 Identities=12% Similarity=0.200 Sum_probs=42.8
Q ss_pred HHHHHHHHHHCCCCEEEe-ceeccccCCC----Cc------------------eeeecccchHHHHHHHHHHcCCEEEEe
Q 003490 59 WEDLIQKAKDGGLDVIET-YVFWNVHEPS----PG------------------NYNFEGRYDLVRFIKTIQKAGLYAHLR 115 (816)
Q Consensus 59 W~d~l~k~Ka~GlNtI~t-yvfWn~hEp~----~G------------------~ydF~g~~dl~~fi~la~~~GL~vilR 115 (816)
+.+.|.-+|++|+|+|-+ .++=+.|... .| .-.|....||.++++.|+++||+|||.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 566788899999999985 5665544321 11 112445679999999999999999998
Q ss_pred c
Q 003490 116 I 116 (816)
Q Consensus 116 ~ 116 (816)
.
T Consensus 312 ~ 312 (683)
T PRK09505 312 V 312 (683)
T ss_pred E
Confidence 5
No 95
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=62.00 E-value=12 Score=44.86 Aligned_cols=58 Identities=16% Similarity=0.194 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHCCCCEEEe-ceeccccCCCCceee----------ecccchHHHHHHHHHHcCCEEEEec
Q 003490 57 DMWEDLIQKAKDGGLDVIET-YVFWNVHEPSPGNYN----------FEGRYDLVRFIKTIQKAGLYAHLRI 116 (816)
Q Consensus 57 ~~W~d~l~k~Ka~GlNtI~t-yvfWn~hEp~~G~yd----------F~g~~dl~~fi~la~~~GL~vilR~ 116 (816)
.-+.+.|.-+|++|+|+|-. .+|-+-.. ..-|+ |.+..||.+|++.|+++||.|||-.
T Consensus 27 ~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~--~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 27 RGIIEKLDYLKKLGVDYIWLNPFYVSPQK--DNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHHHHhHHHHHHcCCCEEEECCcccCCCC--CCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 34667888999999999986 45432110 01222 4455799999999999999999985
No 96
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=61.21 E-value=80 Score=33.99 Aligned_cols=124 Identities=20% Similarity=0.385 Sum_probs=75.2
Q ss_pred hhHHHHHHHHHHCCCCEEEeceeccccCCCC--ceeeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccc
Q 003490 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPSP--GNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLK 134 (816)
Q Consensus 57 ~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~--G~ydF~g~~dl~~fi~la~~~GL~vilR~GPYicaEw~~GGlP~WL~ 134 (816)
--|+++|.-+|++||+-|++-| .|.-+ -+-||+. .......+++++.|+.+ |-+|- .
T Consensus 18 ~sW~erl~~AK~~GFDFvEmSv----DEsDeRLaRLDWs~-~er~~l~~ai~etgv~i-----pSmCl-----------S 76 (287)
T COG3623 18 FSWLERLALAKELGFDFVEMSV----DESDERLARLDWSK-EERLALVNAIQETGVRI-----PSMCL-----------S 76 (287)
T ss_pred CCHHHHHHHHHHcCCCeEEEec----cchHHHHHhcCCCH-HHHHHHHHHHHHhCCCc-----cchhh-----------h
Confidence 4599999999999999999854 44432 3567762 24556788889999732 33331 1
Q ss_pred ccCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEecccccccccccccCc----ccHHH---HHHHHHHH
Q 003490 135 YVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLGA----AGHNY---MTWAAKMA 207 (816)
Q Consensus 135 ~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QiENEyg~~~~~~~~----~~~~Y---~~~l~~~~ 207 (816)
.+...-+-|.|+.-++.....+.+-+..-. +| .|=-+|+- -|..| |.+ +.+.| |+|..++|
T Consensus 77 aHRRfPfGS~D~~~r~~aleiM~KaI~LA~--dL------GIRtIQLA-GYDVY---YE~~d~eT~~rFi~g~~~a~~lA 144 (287)
T COG3623 77 AHRRFPFGSKDEATRQQALEIMEKAIQLAQ--DL------GIRTIQLA-GYDVY---YEEADEETRQRFIEGLKWAVELA 144 (287)
T ss_pred hhccCCCCCCCHHHHHHHHHHHHHHHHHHH--Hh------CceeEeec-cceee---eccCCHHHHHHHHHHHHHHHHHH
Confidence 111112558899888877777776655544 33 34556652 23332 332 23344 45666677
Q ss_pred HHcCCC
Q 003490 208 VEMGTG 213 (816)
Q Consensus 208 ~~~g~~ 213 (816)
.++.+.
T Consensus 145 ~~aqV~ 150 (287)
T COG3623 145 ARAQVM 150 (287)
T ss_pred HhhccE
Confidence 666543
No 97
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=60.66 E-value=17 Score=38.94 Aligned_cols=53 Identities=13% Similarity=0.362 Sum_probs=43.6
Q ss_pred HhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEEEecCc
Q 003490 56 PDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGP 118 (816)
Q Consensus 56 ~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vilR~GP 118 (816)
....++.++.+|+.||++||. ..|..+++ ..+..++|+.++++||.|+-..|.
T Consensus 70 q~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 70 KGKFDEYLNECDELGFEAVEI---------SDGSMEIS-LEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred hhhHHHHHHHHHHcCCCEEEE---------cCCccCCC-HHHHHHHHHHHHhCCCeEeccccc
Confidence 356777888999999999987 56666665 457889999999999999988774
No 98
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=60.32 E-value=15 Score=44.63 Aligned_cols=55 Identities=20% Similarity=0.438 Sum_probs=37.4
Q ss_pred HHHHHHHHCCCCEEEe-cee---------------ccccC-----CCCceee----ec--ccchHHHHHHHHHHcCCEEE
Q 003490 61 DLIQKAKDGGLDVIET-YVF---------------WNVHE-----PSPGNYN----FE--GRYDLVRFIKTIQKAGLYAH 113 (816)
Q Consensus 61 d~l~k~Ka~GlNtI~t-yvf---------------Wn~hE-----p~~G~yd----F~--g~~dl~~fi~la~~~GL~vi 113 (816)
+.|.-+|++|+|+|+. .|+ |.+.- |. +.|- |- ...+|.+||+.|+++||.||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~-~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPE-GSYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcC-hhhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 4588999999999996 444 22220 00 0111 10 12689999999999999999
Q ss_pred Eec
Q 003490 114 LRI 116 (816)
Q Consensus 114 lR~ 116 (816)
|-.
T Consensus 247 lDv 249 (605)
T TIGR02104 247 MDV 249 (605)
T ss_pred EEE
Confidence 984
No 99
>PRK10785 maltodextrin glucosidase; Provisional
Probab=60.21 E-value=15 Score=44.53 Aligned_cols=57 Identities=21% Similarity=0.299 Sum_probs=40.7
Q ss_pred HHHHHHHHHCCCCEEEe-ceecc--ccCCCCcee-----eecccchHHHHHHHHHHcCCEEEEec
Q 003490 60 EDLIQKAKDGGLDVIET-YVFWN--VHEPSPGNY-----NFEGRYDLVRFIKTIQKAGLYAHLRI 116 (816)
Q Consensus 60 ~d~l~k~Ka~GlNtI~t-yvfWn--~hEp~~G~y-----dF~g~~dl~~fi~la~~~GL~vilR~ 116 (816)
.+.|.-+|++|+|+|.. .||=+ .|---...| .|.+..||.+|++.|++.||.|||-.
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45678889999999996 56632 121111111 24456799999999999999999874
No 100
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=59.91 E-value=25 Score=30.18 Aligned_cols=33 Identities=6% Similarity=0.331 Sum_probs=25.2
Q ss_pred CcceEEEEEECCEEEEEEEccccc--ceeEEEeee
Q 003490 499 STGHALHIFINGQLSGSAFGTREA--RRFMYTGKV 531 (816)
Q Consensus 499 ~~~d~~~vfVNg~~vG~~~~~~~~--~~~~~~~~i 531 (816)
...|.+.||++++|+|++++..+. .++.|++.|
T Consensus 25 k~~dsaEV~~g~EfiGvi~~DedeGe~Sy~f~M~I 59 (63)
T PF11324_consen 25 KKDDSAEVYIGDEFIGVIYRDEDEGEVSYNFQMAI 59 (63)
T ss_pred CCCCceEEEeCCEEEEEEEeecCCCcEEEEEEEEE
Confidence 468999999999999999986433 456665543
No 101
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=59.68 E-value=9.1 Score=32.55 Aligned_cols=39 Identities=21% Similarity=0.460 Sum_probs=26.5
Q ss_pred eEEeCCcceEEEEEECCEEEEEEEcccccceeEEEeeeeccCCCcEEEE
Q 003490 494 TLIVQSTGHALHIFINGQLSGSAFGTREARRFMYTGKVNLRAGRNKIAL 542 (816)
Q Consensus 494 ~L~v~~~~d~~~vfVNg~~vG~~~~~~~~~~~~~~~~i~l~~G~n~L~I 542 (816)
.|.|.+.-..|.|||||+++|... ..+. .+..|.++|.|
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~tp-------~~~~---~l~~G~~~v~v 41 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGTTP-------LTLK---DLPPGEHTVTV 41 (71)
T ss_pred EEEEEEECCCCEEEECCEEeccCc-------ceee---ecCCccEEEEE
Confidence 567777667889999999999432 1221 25678766655
No 102
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=59.06 E-value=18 Score=43.47 Aligned_cols=56 Identities=14% Similarity=0.221 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHCCCCEEEe-ceeccccCCC-Ccee----------eecccchHHHHHHHHHHcCCEEEEec
Q 003490 58 MWEDLIQKAKDGGLDVIET-YVFWNVHEPS-PGNY----------NFEGRYDLVRFIKTIQKAGLYAHLRI 116 (816)
Q Consensus 58 ~W~d~l~k~Ka~GlNtI~t-yvfWn~hEp~-~G~y----------dF~g~~dl~~fi~la~~~GL~vilR~ 116 (816)
-+.++|.-+|++|+++|-. .++-. |. ..-| .|....||.++++.|+++||+|||-.
T Consensus 34 gi~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 34 GVTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3567889999999999986 45422 21 1122 23455799999999999999999874
No 103
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=58.53 E-value=4.7 Score=42.67 Aligned_cols=53 Identities=15% Similarity=0.213 Sum_probs=43.9
Q ss_pred HHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEEEe
Q 003490 60 EDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLR 115 (816)
Q Consensus 60 ~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vilR 115 (816)
-...+++.++|-+.|.+.++|..-.+..-.+..+ ++.++.+.|+++||.||+.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEE
Confidence 4568899999999999999997766655445555 8999999999999999999
No 104
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=58.17 E-value=1.4e+02 Score=34.52 Aligned_cols=165 Identities=16% Similarity=0.155 Sum_probs=86.6
Q ss_pred eeCCCCCHhhHHHHHHHHHHCCCCEEEeceeccccCCCC----ceeeeccc---chHHHHHHHHHHcCCEEEEecCceee
Q 003490 49 IHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSP----GNYNFEGR---YDLVRFIKTIQKAGLYAHLRIGPYVC 121 (816)
Q Consensus 49 ~Hy~R~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~----G~ydF~g~---~dl~~fi~la~~~GL~vilR~GPYic 121 (816)
-.|+.++.+.-.+.+++++++|++.+.+=--|....... |.+.-.-. .-|..+++.+++.||..=|+..|.+.
T Consensus 50 ~~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v 129 (394)
T PF02065_consen 50 AYYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMV 129 (394)
T ss_dssp HHTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEE
T ss_pred ccCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccc
Confidence 346778888888999999999998766655576542222 33322211 13999999999999999888888765
Q ss_pred eecC--CCCCCccccccCCeE---ee------cCChhHHHHHHHHHHHHHHHHHhcccc-cccCCceEEecccccccccc
Q 003490 122 AEWN--FGGFPVWLKYVPGIS---FR------TDNEPFKRAMQGFTEKIVNLMKSENLF-ESQGGPIILSQIENEYGAQS 189 (816)
Q Consensus 122 aEw~--~GGlP~WL~~~p~i~---~R------t~d~~y~~~~~~~~~~i~~~l~~~~l~-~~~gGpII~~QiENEyg~~~ 189 (816)
++=. +-..|.|+...++-. -| ..+|...+++...+. +.++++++- ++-..+.-+. |.|+..
T Consensus 130 ~~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~---~ll~~~gidYiK~D~n~~~~----~~~~~~ 202 (394)
T PF02065_consen 130 SPDSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVID---RLLREWGIDYIKWDFNRDIT----EAGSPS 202 (394)
T ss_dssp ESSSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHH---HHHHHTT-SEEEEE-TS-TT----S-SSTT
T ss_pred cchhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHH---HHHHhcCCCEEEeccccCCC----CCCCCC
Confidence 4311 234799998765521 12 234544444444333 344544431 1211121111 222210
Q ss_pred cccCcccHHHHHHHHHH---HHHcCCCcceeecCCC
Q 003490 190 KLLGAAGHNYMTWAAKM---AVEMGTGVPWVMCKEE 222 (816)
Q Consensus 190 ~~~~~~~~~Y~~~l~~~---~~~~g~~vp~~~~~~~ 222 (816)
.++...+|+.-+.++ +++..-+|-+-.|...
T Consensus 203 --~~~~~~~~~~~~y~l~~~L~~~~P~v~iE~CssG 236 (394)
T PF02065_consen 203 --LPEGYHRYVLGLYRLLDRLRARFPDVLIENCSSG 236 (394)
T ss_dssp --S-GHHHHHHHHHHHHHHHHHHHTTTSEEEE-BTT
T ss_pred --chHHHHHHHHHHHHHHHHHHHhCCCcEEEeccCC
Confidence 012234566543333 4455667777777753
No 105
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=57.96 E-value=35 Score=28.45 Aligned_cols=55 Identities=13% Similarity=0.154 Sum_probs=43.2
Q ss_pred HhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEEE
Q 003490 56 PDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHL 114 (816)
Q Consensus 56 ~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vil 114 (816)
|..-.+.++-+.+.|+|...+|++= ++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIAD--TSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 4456788899999999999999843 333 58877765 5778999999999988754
No 106
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=57.71 E-value=20 Score=42.88 Aligned_cols=59 Identities=15% Similarity=0.150 Sum_probs=41.9
Q ss_pred HhhHHHHHHHHHHCCCCEEEe-ceeccccCCCCcee----------eecccchHHHHHHHHHHcCCEEEEec
Q 003490 56 PDMWEDLIQKAKDGGLDVIET-YVFWNVHEPSPGNY----------NFEGRYDLVRFIKTIQKAGLYAHLRI 116 (816)
Q Consensus 56 ~~~W~d~l~k~Ka~GlNtI~t-yvfWn~hEp~~G~y----------dF~g~~dl~~fi~la~~~GL~vilR~ 116 (816)
-.-+.+.|.-+|++|+|+|.. .||=+.. ...-| .|.+..|+.++++.|+++||.|||-.
T Consensus 27 l~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~--~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 27 FPGLTSKLDYLKWLGVDALWLLPFFQSPL--RDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HHHHHHhHHHHHHCCCCEEEECCCcCCCC--CCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 344677899999999999986 4541100 01122 13456799999999999999999973
No 107
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=56.80 E-value=27 Score=35.24 Aligned_cols=55 Identities=25% Similarity=0.349 Sum_probs=30.8
Q ss_pred ceEEeCCcceEEEEEECCEEEEEEE---c--ccccc--eeEEEeeeeccCCCcEEEEEEecCC
Q 003490 493 PTLIVQSTGHALHIFINGQLSGSAF---G--TREAR--RFMYTGKVNLRAGRNKIALLSVAVG 548 (816)
Q Consensus 493 ~~L~v~~~~d~~~vfVNg~~vG~~~---~--~~~~~--~~~~~~~i~l~~G~n~L~ILven~G 548 (816)
..|.|...+ +-.+||||+.||... + +.... -.++++.--|+.|.|.|.+++-+-.
T Consensus 6 A~l~isa~g-~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg~gw 67 (172)
T PF08531_consen 6 ARLYISALG-RYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLGNGW 67 (172)
T ss_dssp -EEEEEEES-EEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--TTEEEEEEEEEE--
T ss_pred EEEEEEeCe-eEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCCCCCEEEEEEeCCc
Confidence 466766544 567999999999754 1 11111 1233333347889999999997644
No 108
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=55.67 E-value=26 Score=42.69 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=42.7
Q ss_pred CHhhHHHHHHHHHHCCCCEEEe-cee-------ccccCCCCceeee------cccchHHHHHHHHHHcCCEEEEe
Q 003490 55 TPDMWEDLIQKAKDGGLDVIET-YVF-------WNVHEPSPGNYNF------EGRYDLVRFIKTIQKAGLYAHLR 115 (816)
Q Consensus 55 ~~~~W~d~l~k~Ka~GlNtI~t-yvf-------Wn~hEp~~G~ydF------~g~~dl~~fi~la~~~GL~vilR 115 (816)
..|.=.+.|--+|++|+++||. .|. |.+ .|..-| ..-.||.+||+.|.++||-|||.
T Consensus 163 ~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGY----q~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 163 YFELAIELLPYLKELGITHIELMPVAEHPGDRSWGY----QGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCC----CcceeccccccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 4555667888999999999995 232 544 233322 33469999999999999999998
No 109
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=54.66 E-value=25 Score=41.71 Aligned_cols=99 Identities=16% Similarity=0.171 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHCCCCEEEeceeccccCCC-C--ceeeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccc
Q 003490 58 MWEDLIQKAKDGGLDVIETYVFWNVHEPS-P--GNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLK 134 (816)
Q Consensus 58 ~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~-~--G~ydF~g~~dl~~fi~la~~~GL~vilR~GPYicaEw~~GGlP~WL~ 134 (816)
.++++++.||++|++.-+.-|-|...=|. + +.-+-+|..--..+|+...++|+...+-. -+=.+|.||.
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL--------fHwDlPq~Le 163 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL--------FHWDLPQALE 163 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE--------ecCCCCHHHH
Confidence 48899999999999999999999988775 2 46788888888899999999999866553 1336899997
Q ss_pred c-cCCeEeecCChhHHHHHHHHHHHHHHHHH
Q 003490 135 Y-VPGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (816)
Q Consensus 135 ~-~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~ 164 (816)
+ .-+-.-+..=..|+++.+--|++..+++|
T Consensus 164 DeYgGwLn~~ivedF~~yA~~CF~~fGDrVK 194 (524)
T KOG0626|consen 164 DEYGGWLNPEIVEDFRDYADLCFQEFGDRVK 194 (524)
T ss_pred HHhccccCHHHHHHHHHHHHHHHHHhcccce
Confidence 6 34432233345688888888888888887
No 110
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=54.50 E-value=31 Score=38.78 Aligned_cols=72 Identities=22% Similarity=0.261 Sum_probs=56.1
Q ss_pred EEEEeeCCCCCHhhHHHHHHHHHHCCCCEEEeceeccccCCCCce-eeecccchHHHHHHHHHHcCCEEEEecCceeeee
Q 003490 45 FSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGN-YNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAE 123 (816)
Q Consensus 45 ~sG~~Hy~R~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~-ydF~g~~dl~~fi~la~~~GL~vilR~GPYicaE 123 (816)
++=|+.+.|.+.+.=...|++|...||.-|=| .+|.|++.. --|. -+.+.++.|.+.||+||+.+-|-|--|
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFt----sl~~~~~~~~~~~~---~~~ell~~Anklg~~vivDvnPsil~~ 76 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFT----SLLIPEEDAELYFH---RFKELLKEANKLGLRVIVDVNPSILKE 76 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccceee----ecccCCchHHHHHH---HHHHHHHHHHhcCcEEEEEcCHHHHhh
Confidence 44567777888888888999999999977655 678877552 1222 688899999999999999998876555
No 111
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=53.64 E-value=40 Score=37.17 Aligned_cols=68 Identities=19% Similarity=0.368 Sum_probs=51.6
Q ss_pred CCCCHhhHHHHHHHHHHCCCC--EEEeceeccccCCCCceeeeccc--chHHHHHHHHHHcCCEEEEecCceeee
Q 003490 52 PRSTPDMWEDLIQKAKDGGLD--VIETYVFWNVHEPSPGNYNFEGR--YDLVRFIKTIQKAGLYAHLRIGPYVCA 122 (816)
Q Consensus 52 ~R~~~~~W~d~l~k~Ka~GlN--tI~tyvfWn~hEp~~G~ydF~g~--~dl~~fi~la~~~GL~vilR~GPYica 122 (816)
...+.+.-.+.++++++.|+. +|..=..|- ..-|.|.|.-. -|..++++..++.|+++++..=|||+.
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~ 96 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINT 96 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCC
Confidence 456788889999999999964 555544452 34566666532 389999999999999999998888853
No 112
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=51.03 E-value=63 Score=35.46 Aligned_cols=109 Identities=13% Similarity=0.202 Sum_probs=70.3
Q ss_pred EEEEEEeeCCCC---CHhhH-HHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEEEecCc
Q 003490 43 ILFSGSIHYPRS---TPDMW-EDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGP 118 (816)
Q Consensus 43 ~l~sG~~Hy~R~---~~~~W-~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vilR~GP 118 (816)
+-+++..|+..- +.... -++|++-.++|.+-+-|-.|+ |.+ .+.+|++.|++.|+.+=+-||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~~F----------d~~---~~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQLFY----------DVD---NFLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeecccee----------cHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 567888887553 22222 234554447999999995543 333 7889999999997775555555
Q ss_pred eee---------eecCCCCCCccccccCCeEeecCChhHHHHHHHHHHHHHHHHHh
Q 003490 119 YVC---------AEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKS 165 (816)
Q Consensus 119 Yic---------aEw~~GGlP~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~ 165 (816)
..+ +||..--+|.|+.+.=. ....+++...+.--++..++++.+++
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~-~~~~~~~~~~~~gi~~a~~~~~~l~~ 251 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMSRLE-PIKDDDEAVRDYGIELIVEMCQKLLA 251 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 444 57877778999976210 01233455566677777778877773
No 113
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=50.74 E-value=1.1e+02 Score=30.57 Aligned_cols=104 Identities=16% Similarity=0.129 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHHCCCCEEEecee--ccccCC----CCceeeecccchHHHHHHHHHHcCCEEE-EecCceeeeecCCCCC
Q 003490 57 DMWEDLIQKAKDGGLDVIETYVF--WNVHEP----SPGNYNFEGRYDLVRFIKTIQKAGLYAH-LRIGPYVCAEWNFGGF 129 (816)
Q Consensus 57 ~~W~d~l~k~Ka~GlNtI~tyvf--Wn~hEp----~~G~ydF~g~~dl~~fi~la~~~GL~vi-lR~GPYicaEw~~GGl 129 (816)
+.-++..+.+++.|+..+....+ |..... .+.+ .-.....+.+.+++|++.|...+ +-+|. .
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~----------~ 95 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHSGR----------Y 95 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECTT----------E
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecCcc----------c
Confidence 45667788889999997765444 443211 1111 11123489999999999998865 55442 0
Q ss_pred CccccccCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEeccccccccc
Q 003490 130 PVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQ 188 (816)
Q Consensus 130 P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QiENEyg~~ 188 (816)
+.+ .......-++.+.+.+++++++.++++ |.+-+||..+..
T Consensus 96 ~~~--------~~~~~~~~~~~~~~~l~~l~~~a~~~g---------v~i~lE~~~~~~ 137 (213)
T PF01261_consen 96 PSG--------PEDDTEENWERLAENLRELAEIAEEYG---------VRIALENHPGPF 137 (213)
T ss_dssp SSS--------TTSSHHHHHHHHHHHHHHHHHHHHHHT---------SEEEEE-SSSSS
T ss_pred ccc--------cCCCHHHHHHHHHHHHHHHHhhhhhhc---------ceEEEecccCcc
Confidence 000 011223566777778888888888442 446689988764
No 114
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=50.30 E-value=21 Score=38.75 Aligned_cols=50 Identities=22% Similarity=0.253 Sum_probs=39.0
Q ss_pred CCCccEEEEEEEecCCCCcccccCCCCceEEeCCcceEEEEEECCEEEEEE
Q 003490 466 RDASDYLWYITSVDIGSSESFLHGGELPTLIVQSTGHALHIFINGQLSGSA 516 (816)
Q Consensus 466 ~d~sgYlwY~T~i~~~~~~~~~~~g~~~~L~v~~~~d~~~vfVNg~~vG~~ 516 (816)
+|-.|.+||+.++.+..+. +...++..+|++.+++-.|.|+|||.-+=..
T Consensus 84 rdfv~~~wyer~v~vpe~w-~~~~~~r~vlr~~s~H~~Aivwvng~~~~~h 133 (297)
T KOG2024|consen 84 RDFVGLVWYERTVTVPESW-TQDLGKRVVLRIGSAHSYAIVWVNGVDALEH 133 (297)
T ss_pred ccceeeeEEEEEEEcchhh-hhhcCCeEEEEeecccceeEEEEcceeeccc
Confidence 6788999999999887554 2233456789999999999999999765433
No 115
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=49.80 E-value=55 Score=36.97 Aligned_cols=82 Identities=17% Similarity=0.323 Sum_probs=60.5
Q ss_pred eeEEEecCeEEECCEEeEEEEEEeeCCCC-CHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecc--cchHHHHH
Q 003490 26 CSVTYDRKALLINGQRRILFSGSIHYPRS-TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEG--RYDLVRFI 102 (816)
Q Consensus 26 ~~v~~d~~~~~idG~~~~l~sG~~Hy~R~-~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g--~~dl~~fi 102 (816)
+.|... .+.|.|.++.++.| +=-+ .++.-.+.-+.+|++|.+.++.|+|= |+---|.|.| ..-|.-+.
T Consensus 80 t~v~~~--~~~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G~g~~gL~~L~ 150 (335)
T PRK08673 80 TVVKVG--DVEIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQGLGEEGLKLLA 150 (335)
T ss_pred CEEEEC--CEEECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEec----CCCCCcccccccHHHHHHHH
Confidence 345553 36777888888988 2222 56777788889999999999999996 4333477875 56677777
Q ss_pred HHHHHcCCEEEEec
Q 003490 103 KTIQKAGLYAHLRI 116 (816)
Q Consensus 103 ~la~~~GL~vilR~ 116 (816)
+.+++.||.++-.|
T Consensus 151 ~~~~~~Gl~v~tev 164 (335)
T PRK08673 151 EAREETGLPIVTEV 164 (335)
T ss_pred HHHHHcCCcEEEee
Confidence 88999999888774
No 116
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=49.59 E-value=66 Score=36.99 Aligned_cols=54 Identities=19% Similarity=0.263 Sum_probs=42.2
Q ss_pred CCHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEEEec
Q 003490 54 STPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (816)
Q Consensus 54 ~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vilR~ 116 (816)
.+.+.|+++|+.+|++|++....=+- ....+.- ..|...++.|++.|+++.|-+
T Consensus 14 yt~~dw~~di~~A~~~GIDgFaLNig------~~d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 14 YTQEDWEADIRLAQAAGIDGFALNIG------SSDSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecc------cCCcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 38899999999999999999887443 1222222 368889999999999888885
No 117
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=49.17 E-value=2.6e+02 Score=30.14 Aligned_cols=65 Identities=14% Similarity=0.274 Sum_probs=50.1
Q ss_pred CHhhHHHHHHHHHHCCCCEEEeceeccccCCCCcee--eeccc--chHHHHHHHHHHcCCEEEEecCcee
Q 003490 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNY--NFEGR--YDLVRFIKTIQKAGLYAHLRIGPYV 120 (816)
Q Consensus 55 ~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~y--dF~g~--~dl~~fi~la~~~GL~vilR~GPYi 120 (816)
..+...+.++++++.|+-.=...+-+...+. .+.| +|.-. -|..++|+..++.|++|++..=|+|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 6777889999999999886555555554443 4556 54422 3899999999999999999998888
No 118
>PRK03705 glycogen debranching enzyme; Provisional
Probab=48.84 E-value=83 Score=38.77 Aligned_cols=55 Identities=27% Similarity=0.398 Sum_probs=36.8
Q ss_pred HHHHHHHCCCCEEEe-ceeccccCCCC---c-----eee----------ecc-----cchHHHHHHHHHHcCCEEEEec
Q 003490 62 LIQKAKDGGLDVIET-YVFWNVHEPSP---G-----NYN----------FEG-----RYDLVRFIKTIQKAGLYAHLRI 116 (816)
Q Consensus 62 ~l~k~Ka~GlNtI~t-yvfWn~hEp~~---G-----~yd----------F~g-----~~dl~~fi~la~~~GL~vilR~ 116 (816)
.|.-+|++|+|+|+. .|+=...++.. | -|| |.. ..+|.++++.|+++||.|||..
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 478899999999995 45422212110 1 011 222 1479999999999999999983
No 119
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=47.57 E-value=81 Score=39.07 Aligned_cols=55 Identities=18% Similarity=0.361 Sum_probs=36.8
Q ss_pred HHHHHHHCCCCEEEe-ceeccccCC---CCc-----ee---e-------e---cccchHHHHHHHHHHcCCEEEEec
Q 003490 62 LIQKAKDGGLDVIET-YVFWNVHEP---SPG-----NY---N-------F---EGRYDLVRFIKTIQKAGLYAHLRI 116 (816)
Q Consensus 62 ~l~k~Ka~GlNtI~t-yvfWn~hEp---~~G-----~y---d-------F---~g~~dl~~fi~la~~~GL~vilR~ 116 (816)
.|.-+|++|+|+|+. .||=...++ ..| -| | | ....+|.+||+.|+++||.|||..
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 367889999999995 455111111 111 01 1 1 124689999999999999999984
No 120
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=46.60 E-value=42 Score=42.20 Aligned_cols=64 Identities=23% Similarity=0.165 Sum_probs=45.5
Q ss_pred CHhhHHHHHHHHHHCCCCEEEe-ceeccc----cCCCC-----ceeeecccchHHHHHHHHHHcCCEEEEecCc
Q 003490 55 TPDMWEDLIQKAKDGGLDVIET-YVFWNV----HEPSP-----GNYNFEGRYDLVRFIKTIQKAGLYAHLRIGP 118 (816)
Q Consensus 55 ~~~~W~d~l~k~Ka~GlNtI~t-yvfWn~----hEp~~-----G~ydF~g~~dl~~fi~la~~~GL~vilR~GP 118 (816)
+-+-|.+.|.-++++|+++|.. .+|=+. |--.. =.-.|.+..+|.+|++.|+++||.|||.+=|
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4566889999999999999976 443111 11100 0113457889999999999999999998533
No 121
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=45.92 E-value=50 Score=36.62 Aligned_cols=59 Identities=25% Similarity=0.342 Sum_probs=40.3
Q ss_pred CHhhHHHHHHHHHHCCCCEEEeceec---cccCCCCc--------eeeecccchHHHHHHHHHHcCCEEEEec
Q 003490 55 TPDMWEDLIQKAKDGGLDVIETYVFW---NVHEPSPG--------NYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (816)
Q Consensus 55 ~~~~W~d~l~k~Ka~GlNtI~tyvfW---n~hEp~~G--------~ydF~g~~dl~~fi~la~~~GL~vilR~ 116 (816)
.+..-.++++.+|..|+|++-.=+== ++.=|... .=.| .|+..||+.|+|.|||+|.|+
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f---~Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKF---KDIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhccccc---cccHHHHHHHHhcCeEEEEEE
Confidence 45556789999999999998642210 01111111 1123 389999999999999999996
No 122
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=45.91 E-value=29 Score=45.60 Aligned_cols=56 Identities=32% Similarity=0.494 Sum_probs=39.3
Q ss_pred HHHHHHHHCCCCEEEe-ceeccccCCC---Cc--e---ee----------ec--ccchHHHHHHHHHHcCCEEEEec
Q 003490 61 DLIQKAKDGGLDVIET-YVFWNVHEPS---PG--N---YN----------FE--GRYDLVRFIKTIQKAGLYAHLRI 116 (816)
Q Consensus 61 d~l~k~Ka~GlNtI~t-yvfWn~hEp~---~G--~---yd----------F~--g~~dl~~fi~la~~~GL~vilR~ 116 (816)
+.|.-+|++|+|+|+. .|+=...|.. .| . || |. +..++.++++.|+++||.|||..
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 4566899999999996 5653322221 11 0 21 23 56799999999999999999983
No 123
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=45.65 E-value=46 Score=37.02 Aligned_cols=66 Identities=14% Similarity=0.229 Sum_probs=49.6
Q ss_pred CHhhHHHHHHHHHHCCCCEEEeceeccccCCCCc--eeeecccc--hHHHHHHHHHHcCCEEEEecCceee
Q 003490 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPG--NYNFEGRY--DLVRFIKTIQKAGLYAHLRIGPYVC 121 (816)
Q Consensus 55 ~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G--~ydF~g~~--dl~~fi~la~~~GL~vilR~GPYic 121 (816)
..+.-.+.++++++.||-.=.+.+-|.... ..+ .|+|+-.+ |..+||+..+++|++|++-+=|+|.
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~ 91 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFG 91 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcC
Confidence 566678899999999887655555555433 344 77776443 8999999999999999988767763
No 124
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=45.43 E-value=31 Score=34.82 Aligned_cols=22 Identities=27% Similarity=0.625 Sum_probs=19.1
Q ss_pred EEeeCCCccEEEEECCeeeeee
Q 003490 638 ALDMEGMGKGQIWINGQSVGRY 659 (816)
Q Consensus 638 ~Ldl~g~gKG~~wVNG~niGRY 659 (816)
.|..++.|+=.+||||+.+|+-
T Consensus 7 ~l~isa~g~Y~l~vNG~~V~~~ 28 (172)
T PF08531_consen 7 RLYISALGRYELYVNGERVGDG 28 (172)
T ss_dssp EEEEEEESEEEEEETTEEEEEE
T ss_pred EEEEEeCeeEEEEECCEEeeCC
Confidence 4777888999999999999975
No 125
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=44.30 E-value=1e+02 Score=32.86 Aligned_cols=75 Identities=16% Similarity=0.161 Sum_probs=47.8
Q ss_pred Cceeeec-ccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccccccCCeEeecCChhHHHHHHHHHHHHHHHHHh
Q 003490 87 PGNYNFE-GRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKS 165 (816)
Q Consensus 87 ~G~ydF~-g~~dl~~fi~la~~~GL~vilR~GPYicaEw~~GGlP~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~ 165 (816)
.|...+. +..++..+++.|++.|++|++.+|= |..+.+- .+ ..++. ..++|.+.|++.+++
T Consensus 36 ~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sigg-----~~~~~~~-~~---------~~~~~---~r~~fi~~lv~~~~~ 97 (253)
T cd06545 36 NGTLNANPVRSELNSVVNAAHAHNVKILISLAG-----GSPPEFT-AA---------LNDPA---KRKALVDKIINYVVS 97 (253)
T ss_pred CCeEEecCcHHHHHHHHHHHHhCCCEEEEEEcC-----CCCCcch-hh---------hcCHH---HHHHHHHHHHHHHHH
Confidence 5666664 3457899999999999999999861 2221110 01 12332 345788999999986
Q ss_pred cccccccCCceEEecccccccc
Q 003490 166 ENLFESQGGPIILSQIENEYGA 187 (816)
Q Consensus 166 ~~l~~~~gGpII~~QiENEyg~ 187 (816)
+++ + ++.|+=|+..
T Consensus 98 ~~~---D-----GIdiDwE~~~ 111 (253)
T cd06545 98 YNL---D-----GIDVDLEGPD 111 (253)
T ss_pred hCC---C-----ceeEEeeccC
Confidence 654 2 3556667653
No 126
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=43.70 E-value=98 Score=34.50 Aligned_cols=153 Identities=18% Similarity=0.177 Sum_probs=87.7
Q ss_pred eeEEEecCeEEECCEEeEEEEEEee-CCCCCHh---hHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHH
Q 003490 26 CSVTYDRKALLINGQRRILFSGSIH-YPRSTPD---MWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRF 101 (816)
Q Consensus 26 ~~v~~d~~~~~idG~~~~l~sG~~H-y~R~~~~---~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~f 101 (816)
..||+-+..+.+|. .=+-+.++ -+-...+ .=...+...++.|.+||-.--.=+ =-||..+.
T Consensus 16 lGvTl~HEHl~~~~---~~~~~~~~~d~~~~~~~~a~~~~e~~~~~a~Gg~TIVD~T~~~------------~GRdv~~m 80 (316)
T COG1735 16 LGVTLMHEHLFIDP---YEIAGGLKNDPYDEDDEVALAIAELKRLMARGGQTIVDATNIG------------IGRDVLKM 80 (316)
T ss_pred ccceeehhhhccch---HHHhhcCCCCcccccHHHHHHHHHHHHHHHcCCCeEeeCCccc------------cCcCHHHH
Confidence 45777777888776 11112222 1111111 122345666778998886421111 12699999
Q ss_pred HHHHHHcCCEEEEecCceeeeecCCCCCCccccccCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEecc
Q 003490 102 IKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQI 181 (816)
Q Consensus 102 i~la~~~GL~vilR~GPYicaEw~~GGlP~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~Qi 181 (816)
.+.+++.||.++...|+|.-+.|+ .|+...| ++.+...+++.++. .+ .|+=|..=|
T Consensus 81 ~~vs~atglnIV~~TGfy~~~~~p-----~~~~~~~--------------i~~~ae~~v~ei~~-Gi----~gT~ikAGi 136 (316)
T COG1735 81 RRVAEATGLNIVAATGFYKAAFHP-----EYFALRP--------------IEELAEFVVKEIEE-GI----AGTGIKAGI 136 (316)
T ss_pred HHHHHHhCCcEEEeccccccccch-----hHHhhCC--------------HHHHHHHHHHHHHh-cc----cCCccccce
Confidence 999999999999999999988875 7776544 45566666666651 11 133232222
Q ss_pred cccccccccccCcccHHHHHHHHHHHHHc-CCCcceeecCC
Q 003490 182 ENEYGAQSKLLGAAGHNYMTWAAKMAVEM-GTGVPWVMCKE 221 (816)
Q Consensus 182 ENEyg~~~~~~~~~~~~Y~~~l~~~~~~~-g~~vp~~~~~~ 221 (816)
=-|-|.+. .-.+.=.+.|+..|++. .+++|+.+-.+
T Consensus 137 Ik~~~~~~----~iTp~Eek~lrAaA~A~~~Tg~Pi~tHt~ 173 (316)
T COG1735 137 IKEAGGSP----AITPLEEKSLRAAARAHKETGAPISTHTP 173 (316)
T ss_pred eeeccCcc----cCCHHHHHHHHHHHHHhhhcCCCeEEecc
Confidence 23444421 12233345566666654 56889876554
No 127
>PLN02361 alpha-amylase
Probab=43.27 E-value=47 Score=38.36 Aligned_cols=60 Identities=15% Similarity=0.216 Sum_probs=40.2
Q ss_pred hhHHH---HHHHHHHCCCCEEEeceecc---ccCCCCce-ee----ecccchHHHHHHHHHHcCCEEEEec
Q 003490 57 DMWED---LIQKAKDGGLDVIETYVFWN---VHEPSPGN-YN----FEGRYDLVRFIKTIQKAGLYAHLRI 116 (816)
Q Consensus 57 ~~W~d---~l~k~Ka~GlNtI~tyvfWn---~hEp~~G~-yd----F~g~~dl~~fi~la~~~GL~vilR~ 116 (816)
.-|+. .|.-+|++|+++|-..=+.. .|--.+.. |+ |....+|.++|+.|+++||.||+-.
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 44544 56667999999998743322 12112222 22 3445799999999999999999874
No 128
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=43.06 E-value=56 Score=36.64 Aligned_cols=68 Identities=4% Similarity=0.057 Sum_probs=51.5
Q ss_pred CHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccc--hHHHHHHHHHHcCCEEEEecCceeeee
Q 003490 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRY--DLVRFIKTIQKAGLYAHLRIGPYVCAE 123 (816)
Q Consensus 55 ~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~--dl~~fi~la~~~GL~vilR~GPYicaE 123 (816)
..+.-++.++++++.||..=...+-+.. ....+.|+|+-.+ |..+|++..++.|++|++..=|+|+.+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIWLDIEH-TDGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEChHH-hCCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 5677788999999999876555544332 2345667776432 899999999999999999988888743
No 129
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=42.65 E-value=59 Score=36.11 Aligned_cols=67 Identities=15% Similarity=0.207 Sum_probs=49.4
Q ss_pred CHhhHHHHHHHHHHCCCCEEEeceeccccCC-----CCceeeeccc--chHHHHHHHHHHcCCEEEEecCceee
Q 003490 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEP-----SPGNYNFEGR--YDLVRFIKTIQKAGLYAHLRIGPYVC 121 (816)
Q Consensus 55 ~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp-----~~G~ydF~g~--~dl~~fi~la~~~GL~vilR~GPYic 121 (816)
..+...+.++++++.|+-+=.+.+-+..+.. .-|.|+|.-. -|..++|+..+++|++|++-.=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 5677789999999999876555554333332 2356766533 38999999999999999998877774
No 130
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=42.51 E-value=62 Score=33.17 Aligned_cols=90 Identities=18% Similarity=0.322 Sum_probs=56.5
Q ss_pred EEEEEeeCCCC-----CHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceee--ecc-cchHHHHHHHHHHcCCEEEEe
Q 003490 44 LFSGSIHYPRS-----TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYN--FEG-RYDLVRFIKTIQKAGLYAHLR 115 (816)
Q Consensus 44 l~sG~~Hy~R~-----~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~yd--F~g-~~dl~~fi~la~~~GL~vilR 115 (816)
+.-|.+||+|. +.++.+.-++.++..+++- ...|--.|..++.+. .+- ...+.+|+++++++|..+++-
T Consensus 53 l~~G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~---~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iY 129 (196)
T cd06416 53 LSTDVYFFPCINCCGSAAGQVQTFLQYLKANGIKY---GTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIY 129 (196)
T ss_pred CccceEEEecCCCCCCHHHHHHHHHHHHHhCCCce---eEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 33499999864 3567888888888765432 112333443334322 111 136789999999999999998
Q ss_pred cCceeeee----c---CCCCCCcccccc
Q 003490 116 IGPYVCAE----W---NFGGFPVWLKYV 136 (816)
Q Consensus 116 ~GPYicaE----w---~~GGlP~WL~~~ 136 (816)
.+++--.. . +...+|.|+...
T Consensus 130 t~~~~w~~~~~~~~~~~~~~ypLWiA~Y 157 (196)
T cd06416 130 SSQYDWSQIFGSSYTCNFSSLPLWYAHY 157 (196)
T ss_pred cCcchhccccCCCcCCCcCCCceEecCC
Confidence 88752111 1 145789999764
No 131
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=41.28 E-value=53 Score=44.44 Aligned_cols=60 Identities=23% Similarity=0.359 Sum_probs=46.4
Q ss_pred CHhhHHHHHHHHHHCCCCEEEec-eeccccCCCCce---e----------eecccchHHHHHHHHHHcCCEEEEecCc
Q 003490 55 TPDMWEDLIQKAKDGGLDVIETY-VFWNVHEPSPGN---Y----------NFEGRYDLVRFIKTIQKAGLYAHLRIGP 118 (816)
Q Consensus 55 ~~~~W~d~l~k~Ka~GlNtI~ty-vfWn~hEp~~G~---y----------dF~g~~dl~~fi~la~~~GL~vilR~GP 118 (816)
+-+-|.+.|.-+|++|+|+|-.- +| +..+|. | .|.+..|+.+|++.|+++||.|||..=|
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~----~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPIL----KARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCc----CCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 66779999999999999999863 33 222221 2 2457789999999999999999998644
No 132
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=41.09 E-value=58 Score=41.27 Aligned_cols=62 Identities=23% Similarity=0.267 Sum_probs=46.1
Q ss_pred CCHhhHHHHHHHHHHCCCCEEEe-ceeccccCCCCc------eee-------ecccchHHHHHHHHHHcCCEEEEecCce
Q 003490 54 STPDMWEDLIQKAKDGGLDVIET-YVFWNVHEPSPG------NYN-------FEGRYDLVRFIKTIQKAGLYAHLRIGPY 119 (816)
Q Consensus 54 ~~~~~W~d~l~k~Ka~GlNtI~t-yvfWn~hEp~~G------~yd-------F~g~~dl~~fi~la~~~GL~vilR~GPY 119 (816)
.+-+-+.+.|.-++++|+|+|-. .++ +..+| ..| |.+..++.+|++.|+++||.|||-+=|-
T Consensus 17 ~tf~~~~~~l~YL~~LGis~IyLsPi~----~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~N 92 (879)
T PRK14511 17 FTFDDAAELVPYFADLGVSHLYLSPIL----AARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPN 92 (879)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECcCc----cCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 34566899999999999999986 333 11122 112 3467899999999999999999986443
No 133
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=40.82 E-value=1.3e+02 Score=37.11 Aligned_cols=110 Identities=13% Similarity=0.050 Sum_probs=66.3
Q ss_pred hhHHHHHHHHHHCCCCEEE---------------eceeccccCCCCceeeecccchHHHHHHHHHHcCCEEEEecCceee
Q 003490 57 DMWEDLIQKAKDGGLDVIE---------------TYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVC 121 (816)
Q Consensus 57 ~~W~d~l~k~Ka~GlNtI~---------------tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vilR~GPYic 121 (816)
+.-...|+.+|++|+|||- .|++| -|=| |+-|.= |-. ...++.+.|+.|..+-.||--
T Consensus 334 ~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~-~~lp--~r~d~f---~~~-aw~l~~r~~v~v~AWmp~~~~ 406 (671)
T PRK14582 334 RNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPN-RLLP--MRADLF---NRV-AWQLRTRAGVNVYAWMPVLSF 406 (671)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCc-cccc--cccCCc---CHH-HHHHHHhhCCEEEEeccceee
Confidence 5577899999999999996 45567 3333 333311 111 345588999999999999853
Q ss_pred e---------ecCCCCCCccccccCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEeccccc
Q 003490 122 A---------EWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENE 184 (816)
Q Consensus 122 a---------Ew~~GGlP~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QiENE 184 (816)
. +++..+=|...+.+. -.| =.+|..++++|++.|.+-|+.+ .+|=++|..-+
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~r--l~P~~pe~r~~i~~i~~dla~~-------~~~dGilf~Dd 467 (671)
T PRK14582 407 DLDPTLPRVKRLDTGEGKAQIHPEQ--YRR--LSPFDDRVRAQVGMLYEDLAGH-------AAFDGILFHDD 467 (671)
T ss_pred ccCCCcchhhhccccCCccccCCCC--CcC--CCCCCHHHHHHHHHHHHHHHHh-------CCCceEEeccc
Confidence 1 222122222111100 112 2357889999999999888843 24545555444
No 134
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=40.47 E-value=60 Score=36.48 Aligned_cols=74 Identities=12% Similarity=0.230 Sum_probs=55.1
Q ss_pred eeCCCC---CHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccc--hH--HHHHHHHHHcCCEEEEecCceee
Q 003490 49 IHYPRS---TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRY--DL--VRFIKTIQKAGLYAHLRIGPYVC 121 (816)
Q Consensus 49 ~Hy~R~---~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~--dl--~~fi~la~~~GL~vilR~GPYic 121 (816)
+|..|. +.+.-++.++++++.||..=...+-+..+. ..+.|+|...+ |. .++++..++.|+.|++..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMD-RRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECccccc-CccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 444453 577789999999999987666555444443 24677776543 77 99999999999999999888887
Q ss_pred ee
Q 003490 122 AE 123 (816)
Q Consensus 122 aE 123 (816)
.+
T Consensus 92 ~~ 93 (339)
T cd06602 92 AN 93 (339)
T ss_pred cC
Confidence 53
No 135
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=39.10 E-value=48 Score=35.83 Aligned_cols=49 Identities=24% Similarity=0.251 Sum_probs=37.1
Q ss_pred HHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEEEecC
Q 003490 63 IQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (816)
Q Consensus 63 l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vilR~G 117 (816)
.+++|++|++.|-. .|..++-.|. +.+..+.+=++.|.++||.+|+++|
T Consensus 79 ~~mLkd~G~~~vii-----GHSERR~~f~-Etd~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 79 AEMLKDLGVKYVII-----GHSERRQYFG-ETDELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred HHHHHHCCCCEEEe-----CcccccCccC-cCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 45789999999988 7877776664 3334444545559999999999998
No 136
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=38.56 E-value=58 Score=31.77 Aligned_cols=51 Identities=27% Similarity=0.462 Sum_probs=32.9
Q ss_pred chHHHHHHHHHHcCCEEEEecCceeeeecC-CCCCCccccccCCeEeecCChhHHHHHHHHHHHHHHHHHh
Q 003490 96 YDLVRFIKTIQKAGLYAHLRIGPYVCAEWN-FGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKS 165 (816)
Q Consensus 96 ~dl~~fi~la~~~GL~vilR~GPYicaEw~-~GGlP~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~ 165 (816)
.||..||++|++.|+.|++=+-| |++.|- +-|+| ++.-+.++++|-.++++
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wydytG~~------------------~~~r~~~y~kI~~~~~~ 87 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP-VNGKWYDYTGLS------------------KEMRQEYYKKIKYQLKS 87 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-----HHHHHHTT--------------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCceEEEecC-CcHHHHHHhCCC------------------HHHHHHHHHHHHHHHHH
Confidence 39999999999999999876655 555552 11211 34556788888888883
No 137
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=38.53 E-value=3.6e+02 Score=30.48 Aligned_cols=72 Identities=21% Similarity=0.339 Sum_probs=52.5
Q ss_pred cCeEEECCEEeEEEEEEeeCCCCCHhhHHHHHHHHHHCCCCEEEecee----ccccCCC------Cc------eeeeccc
Q 003490 32 RKALLINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVF----WNVHEPS------PG------NYNFEGR 95 (816)
Q Consensus 32 ~~~~~idG~~~~l~sG~~Hy~R~~~~~W~d~l~k~Ka~GlNtI~tyvf----Wn~hEp~------~G------~ydF~g~ 95 (816)
.|.|+||=-| || .+.+.-.+.|+.|....+|+...++- |.+--+. .| .|.-
T Consensus 3 ~RG~mlDvaR--------~f--~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~--- 69 (348)
T cd06562 3 HRGLLLDTSR--------HF--LSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTP--- 69 (348)
T ss_pred ccceeeeccc--------cC--CCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECH---
Confidence 3556666444 44 36889999999999999999998764 5543221 23 3433
Q ss_pred chHHHHHHHHHHcCCEEEEec
Q 003490 96 YDLVRFIKTIQKAGLYAHLRI 116 (816)
Q Consensus 96 ~dl~~fi~la~~~GL~vilR~ 116 (816)
.|+..+++.|++.|+.||-.+
T Consensus 70 ~di~eiv~yA~~rgI~vIPEI 90 (348)
T cd06562 70 EDVKEIVEYARLRGIRVIPEI 90 (348)
T ss_pred HHHHHHHHHHHHcCCEEEEec
Confidence 499999999999999999764
No 138
>PLN03059 beta-galactosidase; Provisional
Probab=38.31 E-value=1.2e+02 Score=38.28 Aligned_cols=43 Identities=19% Similarity=0.329 Sum_probs=32.3
Q ss_pred CCCceEEEEEEeCCCCCCC------eEEeeCCCc-cEEEEECCeeeeeee
Q 003490 618 QQPLMWHKAYFNAPEGDEP------LALDMEGMG-KGQIWINGQSVGRYW 660 (816)
Q Consensus 618 ~~~~twYk~~F~~p~g~dp------~~Ldl~g~g-KG~~wVNG~niGRYW 660 (816)
.....||+++|+.+....+ -.|.+.+.+ .-+|||||+-+|.-+
T Consensus 468 ~~dYlwY~t~i~~~~~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~ 517 (840)
T PLN03059 468 ATDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVY 517 (840)
T ss_pred CCceEEEEEEEeecCCccccccCCCceEEEcccCcEEEEEECCEEEEEEE
Confidence 3468999999998654321 237777776 479999999999875
No 139
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=38.06 E-value=1.1e+02 Score=37.45 Aligned_cols=110 Identities=14% Similarity=0.157 Sum_probs=76.8
Q ss_pred CEEeEEEEEEeeCCCCCHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEEEecCc
Q 003490 39 GQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGP 118 (816)
Q Consensus 39 G~~~~l~sG~~Hy~R~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vilR~GP 118 (816)
+++-+.+++..|+.+.+.+.=-++|++-.++|.+-+-|-.|++. + .+.+|++.+++.++.+|.-+-|
T Consensus 460 ~~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~fd~----------~---~~~~~~~~~~~~~vpIi~GImP 526 (612)
T PRK08645 460 KKTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPVYDE----------E---LIEELLEATKHLGVPIFIGIMP 526 (612)
T ss_pred CCCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEecccCCH----------H---HHHHHHHHHhcCCCCEEEEeee
Confidence 34567899999887766665556777777899999999766554 2 7888998888778888887776
Q ss_pred eeee--------ecCCCCCCcccccc-CCeEeecCChhHHHHHHHHHHHHHHHHH
Q 003490 119 YVCA--------EWNFGGFPVWLKYV-PGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (816)
Q Consensus 119 Yica--------Ew~~GGlP~WL~~~-p~i~~Rt~d~~y~~~~~~~~~~i~~~l~ 164 (816)
.... +|..-=+|.|+.+. .. .. +...++++-.++..++++.++
T Consensus 527 i~s~k~~~~~~~~~~Gv~vP~~l~~~l~~--~~-d~~~~~~~gv~~a~e~i~~l~ 578 (612)
T PRK08645 527 LVSYRNAEFLHNEVPGITLPEEIRERMRA--VE-DKEEAREEGVAIARELIDAAR 578 (612)
T ss_pred cCCHHHHHHHHhCCCCCCCCHHHHHHHHh--cC-CchHHHHHHHHHHHHHHHHHH
Confidence 4332 35455578888762 11 11 234667777777777777776
No 140
>PRK09875 putative hydrolase; Provisional
Probab=37.38 E-value=2.3e+02 Score=31.35 Aligned_cols=89 Identities=11% Similarity=0.050 Sum_probs=59.6
Q ss_pred eEEEecCeEEECCEEeEEEEEEeeCCCCCHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHH
Q 003490 27 SVTYDRKALLINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQ 106 (816)
Q Consensus 27 ~v~~d~~~~~idG~~~~l~sG~~Hy~R~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~ 106 (816)
.+|+-|.+++++..+.. +......-..+.=...|+.+|++|.+||----... -.||.....++++
T Consensus 7 G~tl~HEHl~~~~~~~~---~~~~~~l~~~~~~~~el~~~~~~Gg~tiVd~T~~g------------~GRd~~~l~~is~ 71 (292)
T PRK09875 7 GYTLAHEHLHIDLSGFK---NNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRY------------MGRNAQFMLDVMR 71 (292)
T ss_pred CcceecCCeEecChhhc---CCcccccccHHHHHHHHHHHHHhCCCeEEecCCCc------------cCcCHHHHHHHHH
Confidence 57777888887764321 11222112344455578889999998884322221 2379999999999
Q ss_pred HcCCEEEEecCceeeeecCCCCCCccccc
Q 003490 107 KAGLYAHLRIGPYVCAEWNFGGFPVWLKY 135 (816)
Q Consensus 107 ~~GL~vilR~GPYicaEw~~GGlP~WL~~ 135 (816)
+-|+.||.-.|-|.-.. +|.|+..
T Consensus 72 ~tgv~Iv~~TG~y~~~~-----~p~~~~~ 95 (292)
T PRK09875 72 ETGINVVACTGYYQDAF-----FPEHVAT 95 (292)
T ss_pred HhCCcEEEcCcCCCCcc-----CCHHHhc
Confidence 99999999999885333 5888874
No 141
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=37.19 E-value=14 Score=32.78 Aligned_cols=37 Identities=27% Similarity=0.608 Sum_probs=28.5
Q ss_pred CHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHc
Q 003490 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKA 108 (816)
Q Consensus 55 ~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~ 108 (816)
.+..|-.-+|.+- ..||.|..|||. +|.+||++|-|-
T Consensus 20 s~hhWLNflQaAy--------------RL~PgPS~~DF~---qLr~flk~alkT 56 (92)
T PF02228_consen 20 STHHWLNFLQAAY--------------RLQPGPSSFDFH---QLRNFLKLALKT 56 (92)
T ss_dssp THHHHHHHHHHHH--------------HSS---STTTHH---HHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHH--------------hcCCCCCcccHH---HHHHHHHHHHcC
Confidence 5678998888887 458999999999 999999999763
No 142
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=36.90 E-value=70 Score=39.19 Aligned_cols=76 Identities=14% Similarity=0.263 Sum_probs=55.4
Q ss_pred CHhhHHHHHHHHHHCCCCEEEe-cee-----cc--ccCCCCceeee---------cccchHHHHHHHHHHcCCEEEEec-
Q 003490 55 TPDMWEDLIQKAKDGGLDVIET-YVF-----WN--VHEPSPGNYNF---------EGRYDLVRFIKTIQKAGLYAHLRI- 116 (816)
Q Consensus 55 ~~~~W~d~l~k~Ka~GlNtI~t-yvf-----Wn--~hEp~~G~ydF---------~g~~dl~~fi~la~~~GL~vilR~- 116 (816)
.+.+|+ .++++|+++|=+ .++ |. .---..|-||- ....|++++++.|+++||.||+..
T Consensus 76 ~~~~wd----yL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 76 DDALWK----ALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred ChHHHH----HHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 567785 678899999985 233 33 22222466663 334699999999999999999763
Q ss_pred -------CceeeeecCCCCCCcccc
Q 003490 117 -------GPYVCAEWNFGGFPVWLK 134 (816)
Q Consensus 117 -------GPYicaEw~~GGlP~WL~ 134 (816)
-||.-||.+.+-+|.|.+
T Consensus 152 pnHTs~ghdF~lAr~~~~~Y~g~Y~ 176 (688)
T TIGR02455 152 PAHTGKGADFRLAELAHGDYPGLYH 176 (688)
T ss_pred CCCCCCCcchHHHhhcCCCCCCcee
Confidence 248889999998998884
No 143
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=36.80 E-value=63 Score=34.76 Aligned_cols=49 Identities=24% Similarity=0.325 Sum_probs=40.0
Q ss_pred HHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEEEecC
Q 003490 63 IQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (816)
Q Consensus 63 l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vilR~G 117 (816)
..++|++|++.|-. .|..++--|. +.+.++.+=++.|.++||.+|+++|
T Consensus 77 ~~mL~d~G~~~vii-----GHSERR~~f~-Et~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 77 AEMLKDAGAKYVII-----GHSERRQYFG-ETDEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred HHHHHHcCCCEEEe-----CcccccCcCC-CCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 34789999999988 6766665554 3467899999999999999999988
No 144
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=36.47 E-value=1.4e+02 Score=34.94 Aligned_cols=97 Identities=19% Similarity=0.294 Sum_probs=60.6
Q ss_pred eCCCC--CHhhHHHHHHHHHHCCCCEEEe-ceeccccCC----CCceeeec-----cc-----chHHHHHHHHH-HcCCE
Q 003490 50 HYPRS--TPDMWEDLIQKAKDGGLDVIET-YVFWNVHEP----SPGNYNFE-----GR-----YDLVRFIKTIQ-KAGLY 111 (816)
Q Consensus 50 Hy~R~--~~~~W~d~l~k~Ka~GlNtI~t-yvfWn~hEp----~~G~ydF~-----g~-----~dl~~fi~la~-~~GL~ 111 (816)
+.++. +-+.|+++|+.+++.|.|+|-. .+---.... ...|..|+ .. .++.+||+.++ ++||.
T Consensus 13 vlsk~~G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll 92 (423)
T PF14701_consen 13 VLSKWMGPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLL 92 (423)
T ss_pred EhhhhcCCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCce
Confidence 34443 5568999999999999999973 211111100 01222221 11 49999999985 79999
Q ss_pred EEEecCceeeeecCCCCC-CccccccCCeEeecCChhHHHHH
Q 003490 112 AHLRIGPYVCAEWNFGGF-PVWLKYVPGISFRTDNEPFKRAM 152 (816)
Q Consensus 112 vilR~GPYicaEw~~GGl-P~WL~~~p~i~~Rt~d~~y~~~~ 152 (816)
++..+ =|+.-.. =.||.+.|+.-.-..+.|+++..
T Consensus 93 ~~~Dv------V~NHtA~nS~Wl~eHPEagYN~~nsPHL~pA 128 (423)
T PF14701_consen 93 SMTDV------VLNHTANNSPWLREHPEAGYNLENSPHLRPA 128 (423)
T ss_pred EEEEE------eeccCcCCChHHHhCcccccCCCCCcchhhH
Confidence 88664 2555444 46999999865555555665554
No 145
>PLN00196 alpha-amylase; Provisional
Probab=36.42 E-value=71 Score=37.23 Aligned_cols=57 Identities=16% Similarity=0.248 Sum_probs=39.7
Q ss_pred HHHHHHHHHCCCCEEEec-eeccc--cCCCCce-ee-----ecccchHHHHHHHHHHcCCEEEEec
Q 003490 60 EDLIQKAKDGGLDVIETY-VFWNV--HEPSPGN-YN-----FEGRYDLVRFIKTIQKAGLYAHLRI 116 (816)
Q Consensus 60 ~d~l~k~Ka~GlNtI~ty-vfWn~--hEp~~G~-yd-----F~g~~dl~~fi~la~~~GL~vilR~ 116 (816)
.+.|.-+|++|+++|-.- ++-+. |---+.. |+ |....+|.++++.|++.||.||+-.
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 456777899999999874 44221 2222221 22 3334699999999999999999985
No 146
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=35.59 E-value=63 Score=42.11 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=19.5
Q ss_pred chHHHHHHHHHHcCCEEEEec
Q 003490 96 YDLVRFIKTIQKAGLYAHLRI 116 (816)
Q Consensus 96 ~dl~~fi~la~~~GL~vilR~ 116 (816)
.+|.++|+.|+++||.|||-.
T Consensus 555 ~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 589999999999999999985
No 147
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=35.56 E-value=97 Score=34.42 Aligned_cols=66 Identities=12% Similarity=0.148 Sum_probs=47.2
Q ss_pred HhhHHHHHHHHHHCCCCEEEeceeccccCC---CCceeeeccc--chHHHHHHHHHHcCCEEEEecCceee
Q 003490 56 PDMWEDLIQKAKDGGLDVIETYVFWNVHEP---SPGNYNFEGR--YDLVRFIKTIQKAGLYAHLRIGPYVC 121 (816)
Q Consensus 56 ~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp---~~G~ydF~g~--~dl~~fi~la~~~GL~vilR~GPYic 121 (816)
.+.-.+.++++++.|+-+=.+.+-+....- ....|+|.-. -|..++|+..+++|++|++-+=|+|+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 456788999999999876655544322221 1234666432 38999999999999999999888774
No 148
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=35.48 E-value=80 Score=35.09 Aligned_cols=66 Identities=9% Similarity=0.126 Sum_probs=49.2
Q ss_pred CHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeeccc--chHHHHHHHHHHcCCEEEEecCceee
Q 003490 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGR--YDLVRFIKTIQKAGLYAHLRIGPYVC 121 (816)
Q Consensus 55 ~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~--~dl~~fi~la~~~GL~vilR~GPYic 121 (816)
..+..++.++++++.++-.=...+-+.... ..+.|+|+.. -|..+|++..++.|++|++-.=|+|.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~ 89 (317)
T cd06600 22 PQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIR 89 (317)
T ss_pred CHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeecccc
Confidence 667789999999999986655544432222 3466777543 38999999999999999988777774
No 149
>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.34 E-value=20 Score=40.84 Aligned_cols=37 Identities=19% Similarity=0.371 Sum_probs=29.0
Q ss_pred HHHHHHHHHHcCCEE-EEecCceeeeecCCCCC--Cccccc
Q 003490 98 LVRFIKTIQKAGLYA-HLRIGPYVCAEWNFGGF--PVWLKY 135 (816)
Q Consensus 98 l~~fi~la~~~GL~v-ilR~GPYicaEw~~GGl--P~WL~~ 135 (816)
-++.++.|.+.||.| |.||| ||-+...+|-+ +.|+.+
T Consensus 175 aE~Lvr~A~~rGLpv~I~Rpg-~I~gds~tG~~n~~D~~~R 214 (382)
T COG3320 175 AEKLVREAGDRGLPVTIFRPG-YITGDSRTGALNTRDFLTR 214 (382)
T ss_pred HHHHHHHHhhcCCCeEEEecC-eeeccCccCccccchHHHH
Confidence 367789999999996 79996 88888887765 667654
No 150
>PRK12677 xylose isomerase; Provisional
Probab=35.05 E-value=2.5e+02 Score=32.30 Aligned_cols=89 Identities=12% Similarity=0.151 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHCCCCEEEeceeccccCCCCceeeec---ccchHHHHHHHHHHcCCEEE-EecCceeeeecCCCCCCccc
Q 003490 58 MWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFE---GRYDLVRFIKTIQKAGLYAH-LRIGPYVCAEWNFGGFPVWL 133 (816)
Q Consensus 58 ~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~---g~~dl~~fi~la~~~GL~vi-lR~GPYicaEw~~GGlP~WL 133 (816)
-+.+.++++++.|+..|+.. .+..--|+.+ -...+.++.++++++||.|. +-|.-|-...+..|
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh------~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g------ 99 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFH------DDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDG------ 99 (384)
T ss_pred CHHHHHHHHHHhCCCEEEec------ccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCC------
Confidence 36789999999999999873 1111112111 11358899999999999976 44321111111111
Q ss_pred cccCCeEeecCChhHHHHHHHHHHHHHHHHH
Q 003490 134 KYVPGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (816)
Q Consensus 134 ~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~ 164 (816)
.+-+.|+..++...+.+.+.++.-+
T Consensus 100 ------~lts~d~~~R~~Ai~~~~r~IdlA~ 124 (384)
T PRK12677 100 ------AFTSNDRDVRRYALRKVLRNIDLAA 124 (384)
T ss_pred ------cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2445577776766666666666655
No 151
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=34.94 E-value=2e+02 Score=31.76 Aligned_cols=59 Identities=14% Similarity=0.095 Sum_probs=44.2
Q ss_pred CHhhHHHHHHHHHHCCCCEEEecee----cccc-CCC--CceeeecccchHHHHHHHHHHcCCEEEEec
Q 003490 55 TPDMWEDLIQKAKDGGLDVIETYVF----WNVH-EPS--PGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (816)
Q Consensus 55 ~~~~W~d~l~k~Ka~GlNtI~tyvf----Wn~h-Ep~--~G~ydF~g~~dl~~fi~la~~~GL~vilR~ 116 (816)
+.+.-.+.|+.|...|+|++..|+- +..+ |.. +|.|.= .|+.++++.|++.|+.||-.+
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~---~ei~ei~~yA~~~gI~vIPei 80 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTK---EEIREIDDYAAELGIEVIPLI 80 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCH---HHHHHHHHHHHHcCCEEEecC
Confidence 4677889999999999999998753 3222 111 344443 499999999999999999654
No 152
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=34.75 E-value=1.8e+02 Score=30.58 Aligned_cols=126 Identities=16% Similarity=0.167 Sum_probs=72.2
Q ss_pred CHhhHHHHHHHHHHCCCCE-EEe--ceeccccCC---CCc--eeeecc-------------cchHHHHHHHHHHcCCEEE
Q 003490 55 TPDMWEDLIQKAKDGGLDV-IET--YVFWNVHEP---SPG--NYNFEG-------------RYDLVRFIKTIQKAGLYAH 113 (816)
Q Consensus 55 ~~~~W~d~l~k~Ka~GlNt-I~t--yvfWn~hEp---~~G--~ydF~g-------------~~dl~~fi~la~~~GL~vi 113 (816)
-++.-.+.++++|+.|+.+ |+| |+.|...+. .=. -+|+.+ +..+-+.|+.+.++|..+.
T Consensus 52 q~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~v~ 131 (213)
T PRK10076 52 QAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVI 131 (213)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEE
Confidence 3566678999999999864 444 444422221 111 233322 2355567788888898888
Q ss_pred EecCceeeeecCCCCCCccccccCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEecccc----------
Q 003490 114 LRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIEN---------- 183 (816)
Q Consensus 114 lR~GPYicaEw~~GGlP~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QiEN---------- 183 (816)
+|. |. +|++ ++++.-++++.+|++.+. +. +|-+..--+
T Consensus 132 iR~-~v----------------IPg~---nd~~e~i~~ia~~l~~l~--~~----------~~~llpyh~~g~~Ky~~lg 179 (213)
T PRK10076 132 PRL-PL----------------IPGF---TLSRENMQQALDVLIPLG--IK----------QIHLLPFHQYGEPKYRLLG 179 (213)
T ss_pred EEE-EE----------------ECCC---CCCHHHHHHHHHHHHHcC--Cc----------eEEEecCCccchhHHHHcC
Confidence 885 22 3664 456666666666655431 11 221111111
Q ss_pred -cccccccccCcccHHHHHHHHHHHHHcCCCc
Q 003490 184 -EYGAQSKLLGAAGHNYMTWAAKMAVEMGTGV 214 (816)
Q Consensus 184 -Eyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~v 214 (816)
+|-.. ......++.|+.+++++++.|+.+
T Consensus 180 ~~y~~~--~~~~~~~~~l~~~~~~~~~~gl~~ 209 (213)
T PRK10076 180 KTWSMK--EVPAPSSADVATMREMAERAGFQV 209 (213)
T ss_pred CcCccC--CCCCcCHHHHHHHHHHHHHcCCeE
Confidence 22110 122467899999999999998876
No 153
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=34.40 E-value=91 Score=34.97 Aligned_cols=72 Identities=18% Similarity=0.232 Sum_probs=53.1
Q ss_pred cCeEEECCEEeEEEEEEeeCCCCCHhhHHHHHHHHHHCCCCEEEecee----ccccCCC------C-----------cee
Q 003490 32 RKALLINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVF----WNVHEPS------P-----------GNY 90 (816)
Q Consensus 32 ~~~~~idG~~~~l~sG~~Hy~R~~~~~W~d~l~k~Ka~GlNtI~tyvf----Wn~hEp~------~-----------G~y 90 (816)
.|.|+||=-| ||+ +.+...+.|+.|...++|+...++- |.+.-+. . |.|
T Consensus 3 ~RG~mlD~aR--------~f~--~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~Y 72 (329)
T cd06568 3 YRGLMLDVAR--------HFF--TVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYY 72 (329)
T ss_pred ccceeeeccC--------CCc--CHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcC
Confidence 3566666544 443 8899999999999999999998874 5543221 2 233
Q ss_pred eecccchHHHHHHHHHHcCCEEEEec
Q 003490 91 NFEGRYDLVRFIKTIQKAGLYAHLRI 116 (816)
Q Consensus 91 dF~g~~dl~~fi~la~~~GL~vilR~ 116 (816)
. ..|+..+++.|++.|+.||--+
T Consensus 73 T---~~di~elv~yA~~rgI~vIPEi 95 (329)
T cd06568 73 T---QEDYKDIVAYAAERHITVVPEI 95 (329)
T ss_pred C---HHHHHHHHHHHHHcCCEEEEec
Confidence 3 3499999999999999999664
No 154
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=34.21 E-value=95 Score=34.76 Aligned_cols=73 Identities=12% Similarity=0.175 Sum_probs=51.8
Q ss_pred eeCCCC---CHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeeccc--chHHHHHHHHHHcCCEEEEecCceeee
Q 003490 49 IHYPRS---TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGR--YDLVRFIKTIQKAGLYAHLRIGPYVCA 122 (816)
Q Consensus 49 ~Hy~R~---~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~--~dl~~fi~la~~~GL~vilR~GPYica 122 (816)
+|..|. +.+...+.++++++.|+-.=...+-+.... .-+.|+|.-. -|..+|++..++.|+++++..=|+|+.
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~ 90 (339)
T cd06604 13 YQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKV 90 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeC
Confidence 344443 667788999999999986644444433332 3455666543 378999999999999999988788753
No 155
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=34.08 E-value=62 Score=35.06 Aligned_cols=53 Identities=21% Similarity=0.233 Sum_probs=34.9
Q ss_pred HHHHHHHHHCCCCEEEeceecc--ccCCCCceeeecccchHHHHHHHHHHcCCEEEEe
Q 003490 60 EDLIQKAKDGGLDVIETYVFWN--VHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLR 115 (816)
Q Consensus 60 ~d~l~k~Ka~GlNtI~tyvfWn--~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vilR 115 (816)
++.+++||++|++.|...+--+ .++...+..+|+ +..+.++.++++|+.|...
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~~ 177 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCSG 177 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEEe
Confidence 4678899999999987764411 122222234444 6677889999999986533
No 156
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=34.01 E-value=1.9e+02 Score=27.34 Aligned_cols=70 Identities=17% Similarity=0.312 Sum_probs=42.6
Q ss_pred EEEEEEEecCCCCcccccCCCCceEEeCCcceEEEEEECCEEEEEEEcccc-----cceeEEEeeeeccCC-CcEEEEEE
Q 003490 471 YLWYITSVDIGSSESFLHGGELPTLIVQSTGHALHIFINGQLSGSAFGTRE-----ARRFMYTGKVNLRAG-RNKIALLS 544 (816)
Q Consensus 471 YlwY~T~i~~~~~~~~~~~g~~~~L~v~~~~d~~~vfVNg~~vG~~~~~~~-----~~~~~~~~~i~l~~G-~n~L~ILv 544 (816)
.+-++..|..+.++.+ ++.+. ..|.+.+||||+.+-...+... .........+.|.+| .+.|.|+.
T Consensus 47 ~~~~~G~~~~~~~G~y-------~f~~~-~~d~~~l~idg~~vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y 118 (145)
T PF07691_consen 47 SVRWTGYFKPPETGTY-------TFSLT-SDDGARLWIDGKLVIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEY 118 (145)
T ss_dssp EEEEEEEEEESSSEEE-------EEEEE-ESSEEEEEETTEEEEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEE
T ss_pred EEEEEEEEecccCceE-------EEEEE-ecccEEEEECCEEEEcCCccccccccccccceEEEEEEeeCCeeEEEEEEE
Confidence 4557788877655532 34444 5678999999999977664322 011223345566654 78888876
Q ss_pred ecCC
Q 003490 545 VAVG 548 (816)
Q Consensus 545 en~G 548 (816)
.+.+
T Consensus 119 ~~~~ 122 (145)
T PF07691_consen 119 FNRG 122 (145)
T ss_dssp EECS
T ss_pred EECC
Confidence 5554
No 157
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=33.52 E-value=1.1e+02 Score=34.67 Aligned_cols=114 Identities=20% Similarity=0.356 Sum_probs=67.4
Q ss_pred EEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccccccCCeEeecCChhHHHHHH
Q 003490 74 IETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQ 153 (816)
Q Consensus 74 I~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vilR~GPYicaEw~~GGlP~WL~~~p~i~~Rt~d~~y~~~~~ 153 (816)
|.+.|+|+.|--+ --=...|+.|+++|+.|+-- |.-||+ +-+.|+... +.. ++ +...
T Consensus 33 vD~fvywsh~~~~---------iPp~~~idaAHknGV~Vlgt----i~~e~~--~~~~~~~~l----L~~-~~---~~~~ 89 (339)
T cd06547 33 VDTFVYFSHSAVT---------IPPADWINAAHRNGVPVLGT----FIFEWT--GQVEWLEDF----LKK-DE---DGSF 89 (339)
T ss_pred hheeecccCcccc---------CCCcHHHHHHHhcCCeEEEE----EEecCC--CchHHHHHH----hcc-Cc---ccch
Confidence 6777778765432 01145689999999999743 345776 445666531 121 11 2235
Q ss_pred HHHHHHHHHHHhcccccccCCceEEecccccccccccccCcccHHHHHHHHHHHHHc--CCCcceee
Q 003490 154 GFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLGAAGHNYMTWAAKMAVEM--GTGVPWVM 218 (816)
Q Consensus 154 ~~~~~i~~~l~~~~l~~~~gGpII~~QiENEyg~~~~~~~~~~~~Y~~~l~~~~~~~--g~~vp~~~ 218 (816)
++.++|+++.+.+.+ .| +.+-+|+..+... ..+.-+++++.|++.+++. +..|-|+.
T Consensus 90 ~~a~kLv~lak~yGf----DG--w~iN~E~~~~~~~--~~~~l~~F~~~L~~~~~~~~~~~~v~WYD 148 (339)
T cd06547 90 PVADKLVEVAKYYGF----DG--WLINIETELGDAE--KAKRLIAFLRYLKAKLHENVPGSLVIWYD 148 (339)
T ss_pred HHHHHHHHHHHHhCC----Cc--eEeeeeccCCcHH--HHHHHHHHHHHHHHHHhhcCCCcEEEEEe
Confidence 788899999986554 24 7888899873110 1123355666666666653 34555663
No 158
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=33.21 E-value=3.4e+02 Score=28.61 Aligned_cols=49 Identities=24% Similarity=0.432 Sum_probs=33.4
Q ss_pred CCCCHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEE
Q 003490 52 PRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAH 113 (816)
Q Consensus 52 ~R~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vi 113 (816)
++.+++ .++.|+++|+|++.+- |=| .||| |..-|.+.++.++++|+..+
T Consensus 59 f~~~~~----~~~~l~~~G~d~~~la---NNH-----~fD~-G~~gl~~t~~~l~~a~i~~~ 107 (239)
T smart00854 59 FRAPPE----NAAALKAAGFDVVSLA---NNH-----SLDY-GEEGLLDTLAALDAAGIAHV 107 (239)
T ss_pred ecCCHH----HHHHHHHhCCCEEEec---cCc-----cccc-chHHHHHHHHHHHHCCCCEe
Confidence 466665 5778999999998871 112 3444 33457788888888888654
No 159
>PRK15492 triosephosphate isomerase; Provisional
Probab=33.13 E-value=80 Score=34.41 Aligned_cols=49 Identities=14% Similarity=0.108 Sum_probs=40.0
Q ss_pred HHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEEEecC
Q 003490 63 IQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (816)
Q Consensus 63 l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vilR~G 117 (816)
..++|++|++.|-. .|..++..|. +-+..+.+=++.|.++||.+|+++|
T Consensus 87 a~mLkd~G~~~vii-----GHSERR~~f~-Etd~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 87 PLMLKEIGTQLVMI-----GHSERRHKFG-ETDQEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred HHHHHHcCCCEEEE-----CccccccccC-cchHHHHHHHHHHHHCCCEEEEEcC
Confidence 45789999999998 7877776654 4456677788899999999999988
No 160
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=32.56 E-value=3.5e+02 Score=30.44 Aligned_cols=72 Identities=13% Similarity=0.198 Sum_probs=55.8
Q ss_pred eeCCCC---CHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccc--hHHHHHHHHHHcCCEEEEecCceee
Q 003490 49 IHYPRS---TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRY--DLVRFIKTIQKAGLYAHLRIGPYVC 121 (816)
Q Consensus 49 ~Hy~R~---~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~--dl~~fi~la~~~GL~vilR~GPYic 121 (816)
+|..|. +.+..++.++++++.+|-.=.+++-|..++ .-+.|.|...+ |..++++..++.|+++++..=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 455553 678889999999999987666666665554 34677776543 8899999999999999998889887
No 161
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=32.32 E-value=71 Score=28.48 Aligned_cols=47 Identities=15% Similarity=0.166 Sum_probs=24.7
Q ss_pred cCCceEEeccccc-cccccccc----Cc-ccHHHHHHHHHHH---HHcCCCcceee
Q 003490 172 QGGPIILSQIENE-YGAQSKLL----GA-AGHNYMTWAAKMA---VEMGTGVPWVM 218 (816)
Q Consensus 172 ~gGpII~~QiENE-yg~~~~~~----~~-~~~~Y~~~l~~~~---~~~g~~vp~~~ 218 (816)
+...|.+|+|-|| -++....+ +. ....|.+||++++ |+.+-..|+..
T Consensus 7 ~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~ 62 (88)
T PF12876_consen 7 YDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTS 62 (88)
T ss_dssp -GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE-
T ss_pred CCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEe
Confidence 3458999999999 55322111 11 2355666666665 55666777643
No 162
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=32.27 E-value=86 Score=32.94 Aligned_cols=44 Identities=18% Similarity=0.190 Sum_probs=36.2
Q ss_pred HHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEEEec
Q 003490 63 IQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (816)
Q Consensus 63 l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vilR~ 116 (816)
..++|++|++.+-. -|..++ |.-+ |+.+=++.|.++||.+||++
T Consensus 74 ~~mLkd~G~~~vii-----GHSERR--f~Et---di~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 74 AEMLKDIGAKGTLI-----NHSERR--MKLA---DIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHHcCCCEEEE-----CcccCC--CCcc---HHHHHHHHHHHCCCEEEEEE
Confidence 45789999998888 677666 5444 69999999999999999986
No 163
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=31.88 E-value=1.3e+02 Score=34.86 Aligned_cols=68 Identities=15% Similarity=0.370 Sum_probs=46.5
Q ss_pred CHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeeccc--chHHHHHHHHHHcCCEEEEecCceeeee
Q 003490 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGR--YDLVRFIKTIQKAGLYAHLRIGPYVCAE 123 (816)
Q Consensus 55 ~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~--~dl~~fi~la~~~GL~vilR~GPYicaE 123 (816)
..+...+.++.+++.|+-.=...+-..... ..+.|.|+.. -|..++++.+++.|+++++..-|+|.-+
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~ 110 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSND 110 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETT
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCC
Confidence 577788999999999987665554433333 4455655533 2899999999999999999988877644
No 164
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=31.77 E-value=2e+02 Score=31.28 Aligned_cols=110 Identities=17% Similarity=0.234 Sum_probs=67.9
Q ss_pred eEEEEEEeeCCCC----CHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEEEecC
Q 003490 42 RILFSGSIHYPRS----TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (816)
Q Consensus 42 ~~l~sG~~Hy~R~----~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vilR~G 117 (816)
.+.+++..|+.+- +.+.=.++|++=.++|.+.+-|-.+ ||.+ .+.+|++.|++.|+.+=+.+|
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ~~----------fd~~---~~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQLF----------FDND---DYYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeeccc----------cCHH---HHHHHHHHHHHcCCCCCEecc
Confidence 4678888876643 3222235566677899999988444 3334 788999999999766544444
Q ss_pred --ceee-------eecCCCCCCccccccCCeEeecCChhHHHHHHHHHHHHHHHHHh
Q 003490 118 --PYVC-------AEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKS 165 (816)
Q Consensus 118 --PYic-------aEw~~GGlP~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~ 165 (816)
|-.. ++|..-.+|.|+.+.=. +...+....+++--++..+++..+++
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~~l~-~~~~~~~~~~~~gi~~~~~~~~~l~~ 247 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVKRLE-KYDDDPEEVRAVGIEYATDQCEDLIA 247 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3222 23566678988875210 01112235666666777777777763
No 165
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=31.24 E-value=35 Score=35.79 Aligned_cols=15 Identities=33% Similarity=0.780 Sum_probs=13.9
Q ss_pred ccEEEEECCeeeeee
Q 003490 645 GKGQIWINGQSVGRY 659 (816)
Q Consensus 645 gKG~~wVNG~niGRY 659 (816)
.+|.+||||++|.|.
T Consensus 55 t~G~i~~~~~dl~~l 69 (223)
T COG2884 55 TRGKILVNGHDLSRL 69 (223)
T ss_pred CCceEEECCeecccc
Confidence 679999999999997
No 166
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=30.90 E-value=1.2e+02 Score=33.74 Aligned_cols=62 Identities=15% Similarity=0.175 Sum_probs=45.4
Q ss_pred eCCCCCHhhHHHHHHHHHHCCCCEEEecee--ccc--c-CC------------------------CCceeeecccchHHH
Q 003490 50 HYPRSTPDMWEDLIQKAKDGGLDVIETYVF--WNV--H-EP------------------------SPGNYNFEGRYDLVR 100 (816)
Q Consensus 50 Hy~R~~~~~W~d~l~k~Ka~GlNtI~tyvf--Wn~--h-Ep------------------------~~G~ydF~g~~dl~~ 100 (816)
||+ +.+.-++.|+.|...++|++..++- |.+ . .| ..|.|.- .|+..
T Consensus 12 ~~~--~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~---~di~e 86 (326)
T cd06564 12 KYY--SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTK---EEFKE 86 (326)
T ss_pred CCC--CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccH---HHHHH
Confidence 553 7899999999999999999997543 222 1 11 1223333 49999
Q ss_pred HHHHHHHcCCEEEEec
Q 003490 101 FIKTIQKAGLYAHLRI 116 (816)
Q Consensus 101 fi~la~~~GL~vilR~ 116 (816)
+++.|++.|+.||-.+
T Consensus 87 iv~yA~~rgI~vIPEI 102 (326)
T cd06564 87 LIAYAKDRGVNIIPEI 102 (326)
T ss_pred HHHHHHHcCCeEeccC
Confidence 9999999999998653
No 167
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=30.71 E-value=74 Score=40.57 Aligned_cols=21 Identities=14% Similarity=0.445 Sum_probs=18.9
Q ss_pred chHHHHHHHHHHcCCEEEEec
Q 003490 96 YDLVRFIKTIQKAGLYAHLRI 116 (816)
Q Consensus 96 ~dl~~fi~la~~~GL~vilR~ 116 (816)
.++.++|+.|+++||.|||-.
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 479999999999999999984
No 168
>PRK14567 triosephosphate isomerase; Provisional
Probab=30.57 E-value=93 Score=33.79 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=39.5
Q ss_pred HHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEEEecC
Q 003490 63 IQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (816)
Q Consensus 63 l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vilR~G 117 (816)
-.++|++|++.|-. .|..++.-|. +.+..+.+=++.|.++||.+|+++|
T Consensus 78 ~~mLkd~G~~yvii-----GHSERR~~f~-Etd~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 78 ARMLEDIGCDYLLI-----GHSERRSLFA-ESDEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHHHcCCCEEEE-----CcccccCccC-CCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 34789999999988 7777766554 4455677888899999999999998
No 169
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=30.36 E-value=1.1e+02 Score=34.46 Aligned_cols=118 Identities=25% Similarity=0.473 Sum_probs=72.8
Q ss_pred HhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEE-EecCceeeeecCCCCCCcccc
Q 003490 56 PDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAH-LRIGPYVCAEWNFGGFPVWLK 134 (816)
Q Consensus 56 ~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vi-lR~GPYicaEw~~GGlP~WL~ 134 (816)
...|+..-.-.+.+||.+|.+|-+|+.-+.. .|++.||.-.+.+--+.| +.. .||-=..|
T Consensus 132 nPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~---------~d~e~~Lsdl~~APe~si~iLh---aCAhNPTG------- 192 (410)
T KOG1412|consen 132 NPTWENHHAIFEKAGFTTVATYPYWDAENKC---------VDLEGFLSDLESAPEGSIIILH---ACAHNPTG------- 192 (410)
T ss_pred CCchhHHHHHHHHcCCceeeeeeeecCCCce---------ecHHHHHHHHhhCCCCcEEeee---ccccCCCC-------
Confidence 3459988888999999999999999985532 478888988888766633 332 46554343
Q ss_pred ccCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEecccccccccccccCcccHHHHHHHHHHHHHcCCCc
Q 003490 135 YVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLGAAGHNYMTWAAKMAVEMGTGV 214 (816)
Q Consensus 135 ~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QiENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~v 214 (816)
-+| .+.=...|++.||...|+ |. .+=-|..+ +.|..++ =.|.....++.| .
T Consensus 193 mDP--------------T~EQW~qia~vik~k~lf-----~f----FDiAYQGf--ASGD~~~--DawAiR~fV~~g--~ 243 (410)
T KOG1412|consen 193 MDP--------------TREQWKQIADVIKSKNLF-----PF----FDIAYQGF--ASGDLDA--DAWAIRYFVEQG--F 243 (410)
T ss_pred CCC--------------CHHHHHHHHHHHHhcCce-----ee----eehhhccc--ccCCccc--cHHHHHHHHhcC--C
Confidence 112 122234567777765553 21 11123222 2233333 268888888887 4
Q ss_pred ceeecCC
Q 003490 215 PWVMCKE 221 (816)
Q Consensus 215 p~~~~~~ 221 (816)
++|.|+.
T Consensus 244 e~fv~QS 250 (410)
T KOG1412|consen 244 ELFVCQS 250 (410)
T ss_pred eEEEEhh
Confidence 6788874
No 170
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=30.35 E-value=1.7e+02 Score=30.81 Aligned_cols=90 Identities=11% Similarity=0.148 Sum_probs=64.6
Q ss_pred CHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeec-ccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccc
Q 003490 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFE-GRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWL 133 (816)
Q Consensus 55 ~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~-g~~dl~~fi~la~~~GL~vilR~GPYicaEw~~GGlP~WL 133 (816)
.+.+++..++.++++|+-.+-+|..... ....|..+ |..|-..-+++|+++|+- + |-|.++
T Consensus 50 ~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gs~IYf 111 (212)
T cd06418 50 SKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGFP----P-----------GTIIYF 111 (212)
T ss_pred CCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCCC----C-----------CCEEEE
Confidence 5788999999999999999999988766 23334444 788999999999999982 2 233333
Q ss_pred cccCCeEeecCChhHHHHHHHHHHHHHHHHHhc
Q 003490 134 KYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSE 166 (816)
Q Consensus 134 ~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~ 166 (816)
.-+.+. .+..+...+..|++.+.+.|+..
T Consensus 112 avD~d~----~~~~~~~~v~~Y~~a~~~~l~~~ 140 (212)
T cd06418 112 AVDFDA----LDDEVTEVILPYFRGWNDALHEA 140 (212)
T ss_pred EeecCC----CcchhHHHHHHHHHHHHHHHHhc
Confidence 222221 22337778889999999888844
No 171
>KOG3833 consensus Uncharacterized conserved protein, contains RtcB domain [Function unknown]
Probab=30.09 E-value=51 Score=36.74 Aligned_cols=53 Identities=28% Similarity=0.400 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCE--EE-Eec
Q 003490 58 MWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLY--AH-LRI 116 (816)
Q Consensus 58 ~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~--vi-lR~ 116 (816)
.|++.+.+++..|+ +|+..-+--..|..|+.|. |+.+.+++|...||. +| |||
T Consensus 444 ~~~sV~D~L~~~~I-~iR~aSpklvmEEAPesYK-----dVtdVVdtc~~aGiskK~~klrP 499 (505)
T KOG3833|consen 444 THESVLDKLRSRGI-AIRVASPKLVMEEAPESYK-----DVTDVVDTCDAAGISKKAIKLRP 499 (505)
T ss_pred cHHHHHHHHHhCCe-EEEeCCccchhhhCchhhh-----hHHHHhhhhhhcccchhhhcccc
Confidence 49999999999998 6788888889999999997 899999999999996 34 775
No 172
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=29.97 E-value=2.8e+02 Score=29.66 Aligned_cols=104 Identities=14% Similarity=0.127 Sum_probs=57.5
Q ss_pred CCCHhhHHHHHHHHHHCCCCEEEeceeccccCCC-Cceee---e-cccchHHHHHHHHHHcCCEEEEecCceeeeecCCC
Q 003490 53 RSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPS-PGNYN---F-EGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFG 127 (816)
Q Consensus 53 R~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~-~G~yd---F-~g~~dl~~fi~la~~~GL~vilR~GPYicaEw~~G 127 (816)
...++.-+..-+.+++.|+.....- ...|.+. ++.-| . .....+.+-|++|++.|..+|.-+
T Consensus 53 ~~~~~~~~~l~~~l~~~gl~i~~~~--~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~----------- 119 (283)
T PRK13209 53 DWSREQRLALVNALVETGFRVNSMC--LSAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQLA----------- 119 (283)
T ss_pred CCCHHHHHHHHHHHHHcCCceeEEe--cccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEC-----------
Confidence 3467777777888889999876541 1122211 11100 0 011257888999999999866422
Q ss_pred CCCccccccCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEeccccccc
Q 003490 128 GFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYG 186 (816)
Q Consensus 128 GlP~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QiENEyg 186 (816)
|.+.|.. .+++...+.+...++.|++..+++ | |-+.|||-.+
T Consensus 120 ~~~~~~~--------~~~~~~~~~~~~~l~~l~~~A~~~-------G--V~i~iE~~~~ 161 (283)
T PRK13209 120 GYDVYYE--------QANNETRRRFIDGLKESVELASRA-------S--VTLAFEIMDT 161 (283)
T ss_pred Ccccccc--------ccHHHHHHHHHHHHHHHHHHHHHh-------C--CEEEEeecCC
Confidence 1122211 122344455556677777777643 3 3456888643
No 173
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=29.96 E-value=3.1e+02 Score=31.62 Aligned_cols=118 Identities=14% Similarity=0.174 Sum_probs=63.5
Q ss_pred CCCceeeecccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccccccCC--------eEeecCChhHHHHHHHHH
Q 003490 85 PSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPG--------ISFRTDNEPFKRAMQGFT 156 (816)
Q Consensus 85 p~~G~ydF~g~~dl~~fi~la~~~GL~vilR~GPYicaEw~~GGlP~WL~~~p~--------i~~Rt~d~~y~~~~~~~~ 156 (816)
+..|.|||+....=..|++.|++.|...++-. .=-.|.|+...-. ..+| +...++...|+
T Consensus 93 ~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aF---------SNSPP~~MT~NG~~~g~~~~~~NLk---~d~y~~FA~YL 160 (384)
T PF14587_consen 93 PADGSYDWDADAGQRWFLKAAKERGVNIFEAF---------SNSPPWWMTKNGSASGGDDGSDNLK---PDNYDAFADYL 160 (384)
T ss_dssp -TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SSS-GGGSSSSSSB-S-SSS-SS----TT-HHHHHHHH
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEe---------ecCCCHHHhcCCCCCCCCccccccC---hhHHHHHHHHH
Confidence 56799999987777889999999999977653 1136888875321 1122 33455666677
Q ss_pred HHHHHHHHhcccccccCCceEEecccccccccccccC---------cccHHHHHHHHHHHHHcCCCcceeecCC
Q 003490 157 EKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLG---------AAGHNYMTWAAKMAVEMGTGVPWVMCKE 221 (816)
Q Consensus 157 ~~i~~~l~~~~l~~~~gGpII~~QiENEyg~~~~~~~---------~~~~~Y~~~l~~~~~~~g~~vp~~~~~~ 221 (816)
..++++++.+.+ +|=-+-.=||.... ++.+ +.-.+.++.|.+.+++.|+..-+..|+.
T Consensus 161 a~Vv~~~~~~GI------~f~~IsP~NEP~~~-W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea 227 (384)
T PF14587_consen 161 ADVVKHYKKWGI------NFDYISPFNEPQWN-WAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEA 227 (384)
T ss_dssp HHHHHHHHCTT--------EEEEE--S-TTS--GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEE
T ss_pred HHHHHHHHhcCC------ccceeCCcCCCCCC-CCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecch
Confidence 777777764433 33333344887532 2111 1236677888888888999876555553
No 174
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=29.61 E-value=72 Score=34.02 Aligned_cols=59 Identities=17% Similarity=0.093 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHCCCCEEEeceeccccCCCC----ceeeecccchHHHHHHHHHHcCCEEEEec-Cce
Q 003490 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPSP----GNYNFEGRYDLVRFIKTIQKAGLYAHLRI-GPY 119 (816)
Q Consensus 57 ~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~----G~ydF~g~~dl~~fi~la~~~GL~vilR~-GPY 119 (816)
+.+++.++.++++|..+|.+ |..|.... -.+... ...|.++.+.|+++|+.+.+.+ +|+
T Consensus 90 ~~~~~~i~~a~~lGa~~i~~---~~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~~~~~ 153 (275)
T PRK09856 90 DMIKLAMDMAKEMNAGYTLI---SAAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEPLTPY 153 (275)
T ss_pred HHHHHHHHHHHHhCCCEEEE---cCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEecCCCC
Confidence 35667889999999999965 33332211 112211 1368889999999999999887 444
No 175
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=29.53 E-value=2.3e+02 Score=31.12 Aligned_cols=114 Identities=18% Similarity=0.270 Sum_probs=70.2
Q ss_pred CCHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeec---ccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCC
Q 003490 54 STPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFE---GRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFP 130 (816)
Q Consensus 54 ~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~---g~~dl~~fi~la~~~GL~vilR~GPYicaEw~~GGlP 130 (816)
..-+.-+.-+.-+.++|+.-|-+=.-|...+ ....+||+ ...||.+.++-|++.|.-|+|.- + |..||-.
T Consensus 29 ~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~-~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~----~--~~~~~~~ 101 (273)
T PF10566_consen 29 ATTETQKRYIDFAAEMGIEYVLVDAGWYGWE-KDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWY----H--SETGGNV 101 (273)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEEBTTCCGS---TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEE----E--CCHTTBH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecccccccc-ccccccccccCCccCHHHHHHHHHHcCCCEEEEE----e--CCcchhh
Confidence 3667788899999999999888877787622 24567775 45799999999999998888873 2 3332221
Q ss_pred --------ccccc-----cCCeEee--cCChhHHHHHHHHHHHHHHHHHhcccccccCCceE
Q 003490 131 --------VWLKY-----VPGISFR--TDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPII 177 (816)
Q Consensus 131 --------~WL~~-----~p~i~~R--t~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII 177 (816)
.+|.. +.||++= ..| -+.+-+|+.+|++.-++++|+..=.|++.
T Consensus 102 ~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d---~Q~~v~~y~~i~~~AA~~~LmvnfHg~~k 160 (273)
T PF10566_consen 102 ANLEKQLDEAFKLYAKWGVKGVKIDFMDRD---DQEMVNWYEDILEDAAEYKLMVNFHGATK 160 (273)
T ss_dssp HHHHCCHHHHHHHHHHCTEEEEEEE--SST---SHHHHHHHHHHHHHHHHTT-EEEETTS--
T ss_pred HhHHHHHHHHHHHHHHcCCCEEeeCcCCCC---CHHHHHHHHHHHHHHHHcCcEEEecCCcC
Confidence 11111 3444421 112 24567899999999999998776666554
No 176
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=29.35 E-value=1.3e+02 Score=25.02 Aligned_cols=43 Identities=35% Similarity=0.471 Sum_probs=31.9
Q ss_pred HHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEEE
Q 003490 59 WEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHL 114 (816)
Q Consensus 59 W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vil 114 (816)
.++.++++|+.|++.|.+= -|. ++. ...+|.+++++.|+.||.
T Consensus 17 ~~~~~~~a~~~g~~~v~iT----Dh~------~~~---~~~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 17 PEELVKRAKELGLKAIAIT----DHG------NLF---GAVEFYKAAKKAGIKPII 59 (67)
T ss_pred HHHHHHHHHHcCCCEEEEe----eCC------ccc---CHHHHHHHHHHcCCeEEE
Confidence 5688999999999999761 121 222 467888999999988764
No 177
>PTZ00333 triosephosphate isomerase; Provisional
Probab=29.19 E-value=1e+02 Score=33.40 Aligned_cols=48 Identities=23% Similarity=0.223 Sum_probs=40.7
Q ss_pred HHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEEEecC
Q 003490 64 QKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (816)
Q Consensus 64 ~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vilR~G 117 (816)
.++|++|++.|-. .|..++.-|. +.+.++.+=++.|.++||.+|+++|
T Consensus 83 ~mL~d~G~~~vii-----GHSERR~~f~-Etd~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 83 EMLKDLGINWTIL-----GHSERRQYFG-ETNEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred HHHHHcCCCEEEE-----CcccccCcCC-CCcHHHHHHHHHHHHCCCEEEEEcC
Confidence 5789999999998 7877776663 4467899999999999999999998
No 178
>PLN02877 alpha-amylase/limit dextrinase
Probab=29.16 E-value=89 Score=40.08 Aligned_cols=21 Identities=14% Similarity=0.486 Sum_probs=18.9
Q ss_pred chHHHHHHHHHHcCCEEEEec
Q 003490 96 YDLVRFIKTIQKAGLYAHLRI 116 (816)
Q Consensus 96 ~dl~~fi~la~~~GL~vilR~ 116 (816)
.++.++|+.++++||.|||-.
T Consensus 466 ~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 369999999999999999984
No 179
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=29.07 E-value=2.5e+02 Score=31.83 Aligned_cols=72 Identities=18% Similarity=0.283 Sum_probs=51.8
Q ss_pred cCeEEECCEEeEEEEEEeeCCCCCHhhHHHHHHHHHHCCCCEEEecee----ccccC-----------------------
Q 003490 32 RKALLINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVF----WNVHE----------------------- 84 (816)
Q Consensus 32 ~~~~~idG~~~~l~sG~~Hy~R~~~~~W~d~l~k~Ka~GlNtI~tyvf----Wn~hE----------------------- 84 (816)
-|.|+||=.| || .+.+...+.|..|...++|+...++- |.+--
T Consensus 3 ~RG~mLD~aR--------~f--~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~ 72 (357)
T cd06563 3 WRGLMLDVSR--------HF--FPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQG 72 (357)
T ss_pred ccceeeeccc--------cC--cCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCccccccccc
Confidence 3455555443 54 36889999999999999999998764 43211
Q ss_pred -----CCCceeeecccchHHHHHHHHHHcCCEEEEec
Q 003490 85 -----PSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (816)
Q Consensus 85 -----p~~G~ydF~g~~dl~~fi~la~~~GL~vilR~ 116 (816)
+..|.|.- .|+..+++.|++.|+.||--+
T Consensus 73 ~~~~~~~~~~YT~---~di~eiv~yA~~rgI~VIPEI 106 (357)
T cd06563 73 GGDGTPYGGFYTQ---EEIREIVAYAAERGITVIPEI 106 (357)
T ss_pred ccCCCccCceECH---HHHHHHHHHHHHcCCEEEEec
Confidence 11244543 499999999999999999664
No 180
>PRK14566 triosephosphate isomerase; Provisional
Probab=28.68 E-value=1.1e+02 Score=33.53 Aligned_cols=49 Identities=27% Similarity=0.231 Sum_probs=39.3
Q ss_pred HHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEEEecC
Q 003490 63 IQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (816)
Q Consensus 63 l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vilR~G 117 (816)
-.++|++|++.|-. -|..++..|. +-+..+.+=++.|.++||.+|+++|
T Consensus 88 ~~mL~d~G~~~vii-----GHSERR~~f~-Etd~~v~~Kv~~al~~gl~pIvCvG 136 (260)
T PRK14566 88 GQMLKDAGCRYVII-----GHSERRRMYG-ETSNIVAEKFAAAQKHGLTPILCVG 136 (260)
T ss_pred HHHHHHcCCCEEEE-----CcccccCCCC-cCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 34789999999888 6777766554 3456677788999999999999987
No 181
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=28.67 E-value=1.2e+02 Score=33.46 Aligned_cols=88 Identities=20% Similarity=0.319 Sum_probs=59.0
Q ss_pred HHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCE--EEEecCc--------eeeeecCCCCCCc
Q 003490 62 LIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLY--AHLRIGP--------YVCAEWNFGGFPV 131 (816)
Q Consensus 62 ~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~--vilR~GP--------YicaEw~~GGlP~ 131 (816)
.|++-.++|-+.+.|-.| ||.+ .+.+|++.|++.|+. |+..+-| ++ ++...-.+|.
T Consensus 168 ~Lk~K~~aGA~~~iTQ~~----------Fd~~---~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~-~~~~Gv~vP~ 233 (296)
T PRK09432 168 NLKRKVDAGANRAITQFF----------FDVE---SYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKF-ADMTNVRIPA 233 (296)
T ss_pred HHHHHHHcCCCeeecccc----------cchH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHH-HHccCCCCCH
Confidence 566666789998888444 3444 799999999999955 5555545 24 6777788999
Q ss_pred cccccCCeEeecCC-hhHHHHHHHHHHHHHHHHHh
Q 003490 132 WLKYVPGISFRTDN-EPFKRAMQGFTEKIVNLMKS 165 (816)
Q Consensus 132 WL~~~p~i~~Rt~d-~~y~~~~~~~~~~i~~~l~~ 165 (816)
||.+.=. +. .+| +..+++--++..++++.+.+
T Consensus 234 ~l~~~l~-~~-~d~~~~~~~~Gi~~a~e~i~~L~~ 266 (296)
T PRK09432 234 WMAKMFD-GL-DDDAETRKLVGASIAMDMVKILSR 266 (296)
T ss_pred HHHHHHH-hc-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9976311 01 233 34566666777777777763
No 182
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=28.15 E-value=1.4e+02 Score=32.96 Aligned_cols=60 Identities=13% Similarity=0.215 Sum_probs=47.5
Q ss_pred CCHhhHHHHHHHHHHCCCCEEEecee----ccccCC----------------CCceeeecccchHHHHHHHHHHcCCEEE
Q 003490 54 STPDMWEDLIQKAKDGGLDVIETYVF----WNVHEP----------------SPGNYNFEGRYDLVRFIKTIQKAGLYAH 113 (816)
Q Consensus 54 ~~~~~W~d~l~k~Ka~GlNtI~tyvf----Wn~hEp----------------~~G~ydF~g~~dl~~fi~la~~~GL~vi 113 (816)
.+.+...+.|+.|...++|+...++- |.+--+ ..|.|.-+ |+..+++.|++.|+.||
T Consensus 13 ~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~---di~elv~yA~~rgI~vi 89 (303)
T cd02742 13 LSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYA---QLKDIIEYAAARGIEVI 89 (303)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHH---HHHHHHHHHHHcCCEEE
Confidence 37888999999999999999999887 755321 12344444 99999999999999999
Q ss_pred Eec
Q 003490 114 LRI 116 (816)
Q Consensus 114 lR~ 116 (816)
-.+
T Consensus 90 PEi 92 (303)
T cd02742 90 PEI 92 (303)
T ss_pred Eec
Confidence 654
No 183
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=28.08 E-value=1.3e+02 Score=35.38 Aligned_cols=55 Identities=27% Similarity=0.396 Sum_probs=45.3
Q ss_pred eeCCCCCHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEEEe
Q 003490 49 IHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLR 115 (816)
Q Consensus 49 ~Hy~R~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vilR 115 (816)
..|.+.|.+.-++.++++.+.|++.|+++..-|.. +++...++.|+++|+.|.+.
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~ 142 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVA 142 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEE
Confidence 44666777778889999999999999999886653 25888999999999988665
No 184
>PRK14565 triosephosphate isomerase; Provisional
Probab=27.79 E-value=97 Score=33.34 Aligned_cols=49 Identities=16% Similarity=0.234 Sum_probs=36.1
Q ss_pred HHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEEEecC
Q 003490 63 IQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (816)
Q Consensus 63 l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vilR~G 117 (816)
.+++|++|++.+-. .|..++--|+ +.+..+.+=++.|.++||.+|+++|
T Consensus 78 ~~mLkd~G~~~vii-----GHSERR~~f~-Etd~~V~~Kv~~al~~gl~pIvCiG 126 (237)
T PRK14565 78 AKMLKECGCSYVIL-----GHSERRSTFH-ETDSDIRLKAESAIESGLIPIICVG 126 (237)
T ss_pred HHHHHHcCCCEEEE-----CcccccCcCC-cCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 45789999999888 6776665554 2233344444899999999999998
No 185
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=27.76 E-value=4.2e+02 Score=29.80 Aligned_cols=140 Identities=16% Similarity=0.208 Sum_probs=66.3
Q ss_pred HHHHHHHCCCCE-----EEeceeccccCCCCceeeecccchHHHHHH----HHHHcCCEEEE--ecCceeeeecCCCCCC
Q 003490 62 LIQKAKDGGLDV-----IETYVFWNVHEPSPGNYNFEGRYDLVRFIK----TIQKAGLYAHL--RIGPYVCAEWNFGGFP 130 (816)
Q Consensus 62 ~l~k~Ka~GlNt-----I~tyvfWn~hEp~~G~ydF~g~~dl~~fi~----la~~~GL~vil--R~GPYicaEw~~GGlP 130 (816)
+++++.+.|++. +..|-.|+ +...+ +... ..++..|++ .|++..--+++ -=|.-+-.+ ..|.+.
T Consensus 152 rl~~l~~kGfDGvfLD~lDsy~~~~--~~~~~-~~~~-~~~m~~~i~~Ia~~ar~~~P~~~II~NnG~eil~~-~~g~~~ 226 (315)
T TIGR01370 152 YLDRVIAQGFDGVYLDLIDAFEYWA--ENGDN-RPGA-AAEMIAFVCEIAAYARAQNPQFVIIPQNGEELLRD-DHGGLA 226 (315)
T ss_pred HHHHHHHcCCCeEeeccchhhhhhc--ccCCc-chhh-HHHHHHHHHHHHHHHHHHCCCEEEEecCchhhhhc-cccchh
Confidence 577888899884 45676664 21111 1110 123444444 34666444443 223222211 123332
Q ss_pred ccccc--cCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEecccccccccccccCcccHHHHHHHHHHHH
Q 003490 131 VWLKY--VPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLGAAGHNYMTWAAKMAV 208 (816)
Q Consensus 131 ~WL~~--~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QiENEyg~~~~~~~~~~~~Y~~~l~~~~~ 208 (816)
.=+.- ..++ +-......-++-++|.-+-+.++++ +|=||+.+ ||..-.... ..+++=++.+++.++
T Consensus 227 ~~idgV~~Esl-f~~~~~~~~e~dr~~~l~~L~~~~~------~G~~Vl~I----DY~~~~~~~-~~n~~~~~~~~~~~~ 294 (315)
T TIGR01370 227 ATVSGWAVEEL-FYYAANRPTEAERQRRLLALYRLWQ------QGKFVLTV----DYVDDGTKT-NENPARMKDAAEKAR 294 (315)
T ss_pred hhceEEEecce-EEcCCCCCCHHHHHHHHHHHHHHHH------CCCcEEEE----EecCCcccc-hhhHHHHHHHHHHHH
Confidence 21111 1222 3222223334455555555555552 25588886 454311000 013566677888888
Q ss_pred HcCCCcceeec
Q 003490 209 EMGTGVPWVMC 219 (816)
Q Consensus 209 ~~g~~vp~~~~ 219 (816)
++|+ +|+++.
T Consensus 295 ~~Gf-~pYVsd 304 (315)
T TIGR01370 295 AAGL-IPYVAE 304 (315)
T ss_pred HcCC-eeeecC
Confidence 8998 588763
No 186
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=27.55 E-value=1.9e+02 Score=31.26 Aligned_cols=104 Identities=18% Similarity=0.217 Sum_probs=63.5
Q ss_pred EeeCCCCCHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcC--CEEEEecCceee----
Q 003490 48 SIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAG--LYAHLRIGPYVC---- 121 (816)
Q Consensus 48 ~~Hy~R~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~G--L~vilR~GPYic---- 121 (816)
+.|+...+.+.=-++|++=.++|.+.+-|-.+.+. ..+.+|++.|++.| +.|++.+=|-..
T Consensus 138 e~hp~~~~~~~~~~~L~~Ki~aGA~f~iTQ~~fd~-------------~~~~~~~~~~~~~gi~vPIi~GI~p~~s~~~l 204 (274)
T cd00537 138 EGHPEAPSLEEDIKRLKRKVDAGADFIITQLFFDN-------------DAFLRFVDRCRAAGITVPIIPGIMPLTSYKQA 204 (274)
T ss_pred CcCCCCCCHHHHHHHHHHHHHCCCCEEeecccccH-------------HHHHHHHHHHHHcCCCCCEEeeccccCCHHHH
Confidence 34444443443334555555679999999655443 37999999999998 556666656433
Q ss_pred ---eecCCCCCCccccccCCeEeecCChhHHHHHHHHHHHHHHHHHh
Q 003490 122 ---AEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKS 165 (816)
Q Consensus 122 ---aEw~~GGlP~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~ 165 (816)
++|-.-++|.|+.+.=.- ...+....+++-.++..++++.+++
T Consensus 205 ~~~~~~~Gv~vP~~~~~~l~~-~~~~~~~~~~~g~~~~~~l~~~l~~ 250 (274)
T cd00537 205 KRFAKLCGVEIPDWLLERLEK-LKDDAEAVRAEGIEIAAELCDELLE 250 (274)
T ss_pred HHHHHhhCCCCCHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 356666789999762110 1122234556666777777777773
No 187
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=26.87 E-value=1.5e+02 Score=32.62 Aligned_cols=59 Identities=20% Similarity=0.286 Sum_probs=43.1
Q ss_pred CHhhHHHHHHHHHHCCCCEEEeceeccccCC--CCc--eeeecccchHHHHHHHHHHcCCEEEEec
Q 003490 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEP--SPG--NYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (816)
Q Consensus 55 ~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp--~~G--~ydF~g~~dl~~fi~la~~~GL~vilR~ 116 (816)
.++..++.++.+++.|.+.|-+|.-+..-.+ .++ .++- ..+.+.+++|+++|+.|.+-.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~---e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSE---EELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCH---HHHHHHHHHHHHcCCEEEEEe
Confidence 4788899999999999999999875422111 112 2332 378899999999999887663
No 188
>PRK09267 flavodoxin FldA; Validated
Probab=26.60 E-value=4.4e+02 Score=25.97 Aligned_cols=74 Identities=7% Similarity=0.057 Sum_probs=48.4
Q ss_pred ECCEEeEEEEEEeeCCCCCHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEE
Q 003490 37 INGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAH 113 (816)
Q Consensus 37 idG~~~~l~sG~~Hy~R~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vi 113 (816)
++.-..++++...|+...+|..|.+-+.+++...++...+.+|= ......-.-.| ..-+..+-+++++.|..++
T Consensus 44 l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaifg-~g~~~~~~~~~--~~~~~~l~~~l~~~g~~~v 117 (169)
T PRK09267 44 FEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALFG-LGDQEDYAEYF--CDAMGTLYDIVEPRGATIV 117 (169)
T ss_pred HhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEEe-cCCCCcchHHH--HHHHHHHHHHHHHCCCEEE
Confidence 44556788999999878778889988888887777777777773 21111000111 1235667777888896654
No 189
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=26.56 E-value=9.6e+02 Score=26.99 Aligned_cols=231 Identities=14% Similarity=0.115 Sum_probs=102.4
Q ss_pred HHHHHHCCCCEEEe-------ceeccccCCCCceeeecccch-HHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccc
Q 003490 63 IQKAKDGGLDVIET-------YVFWNVHEPSPGNYNFEGRYD-LVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLK 134 (816)
Q Consensus 63 l~k~Ka~GlNtI~t-------yvfWn~hEp~~G~ydF~g~~d-l~~fi~la~~~GL~vilR~GPYicaEw~~GGlP~WL~ 134 (816)
++.+|++|+.-|-. +-.|.-....-..-+-...+| +.+|.+.|+++||.+-+=..| ++|.+...+.-..
T Consensus 97 ~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~---~dw~~~~~~~~~~ 173 (346)
T PF01120_consen 97 AKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSP---WDWHHPDYPPDEE 173 (346)
T ss_dssp HHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEES---SSCCCTTTTSSCH
T ss_pred HHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecc---hHhcCcccCCCcc
Confidence 56889999986642 223554332222222223345 467999999999987763322 3666544433322
Q ss_pred cc-CCeEeecCChhHHHHHH-HHHHHHHHHHHhcccccccCCceEEe-cccccccccccccCcccHHHHHHHHHHHHHcC
Q 003490 135 YV-PGISFRTDNEPFKRAMQ-GFTEKIVNLMKSENLFESQGGPIILS-QIENEYGAQSKLLGAAGHNYMTWAAKMAVEMG 211 (816)
Q Consensus 135 ~~-p~i~~Rt~d~~y~~~~~-~~~~~i~~~l~~~~l~~~~gGpII~~-QiENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g 211 (816)
.. +. .....+.+.+.++ .++.+|-+.+.++++ =+++ -..... .....-...+.+++++..
T Consensus 174 ~~~~~--~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~-------d~lWfDg~~~~--------~~~~~~~~~~~~~i~~~q 236 (346)
T PF01120_consen 174 GDENG--PADGPGNWQRYYNEYWLAQLRELLTRYKP-------DILWFDGGWPD--------PDEDWDSAELYNWIRKLQ 236 (346)
T ss_dssp CHHCC----HCCHHHHHHHHHHHHHHHHHHHHCSTE-------SEEEEESTTSC--------CCTHHHHHHHHHHHHHHS
T ss_pred CCccc--ccccchhhHhHhhhhhHHHHHHHHhCCCc-------ceEEecCCCCc--------cccccCHHHHHHHHHHhC
Confidence 11 11 1122344444455 445555555554321 1221 110000 112222366777777776
Q ss_pred CCcceeecCCCCCCCccccCCCCCcc-CCCCCCC-CCCCce-eeecccccccccCCCCCcCCHHHHHHHHHHHHHhCCee
Q 003490 212 TGVPWVMCKEEDAPDPVINSCNGFYC-DAFTPNQ-PYKPTI-WTEAWSGWFTEFGGPIHQRPVQDLAFAAARFIQKGGSF 288 (816)
Q Consensus 212 ~~vp~~~~~~~~~~~~vi~t~ng~~~-~~~~~~~-p~~P~~-~tE~w~Gwf~~wG~~~~~r~~~d~~~~~~~~l~~g~s~ 288 (816)
-++.+............ .+.+ +...+.. ...|.- ++=.-.+||=. -.....++++++...+.+..++|+++
T Consensus 237 p~~ii~~r~~~~~~~~~-----d~~~~E~~~~~~~~~~pwE~~~ti~~~W~y~-~~~~~~ks~~~li~~l~~~vs~ngnl 310 (346)
T PF01120_consen 237 PDVIINNRWGGNEQGDG-----DYNTPERGIPGEIQGRPWETCTTIGPSWGYN-TPDEKYKSADELIDILVDSVSRNGNL 310 (346)
T ss_dssp TTSEEECCCSSCSSCCB-----SCCEECTTBTTTEEESEEEEEEESSSSSS-C-GGGCGS--HHHHHHHHHHHHTBTEEE
T ss_pred CeEEEecccCCCCCccc-----cccchhccCCCCCCCCCccccCcCCCCCccc-CCCCCcCCHHHHHHHHHHHhccCceE
Confidence 65533211111000000 0111 1111110 111211 01111333320 01234468899999999999999875
Q ss_pred -eeeeEeeccCCCCCCCCCCCccccCCCCCCCCcCCCCCchhHHHHHHHHHHHHhhhc
Q 003490 289 -INYYMYHGGTNFGRSAGGPFITTSYDYDAPIDEYGLIRQPKYGHLKELHRAIKMCER 345 (816)
Q Consensus 289 -~n~YM~hGGTNfG~~~G~~~~~TSYDYdAPl~E~G~~~~pKy~~lr~l~~~i~~~~~ 345 (816)
+|. +.+.+|.+..+--..||++.+-|+...+
T Consensus 311 LLNi--------------------------gP~~dG~ip~~~~~~L~e~G~Wl~~nge 342 (346)
T PF01120_consen 311 LLNI--------------------------GPDPDGTIPEEQVERLREIGDWLKVNGE 342 (346)
T ss_dssp EEEE-----------------------------TTSS--HHHHHHHHHHHHHHHHHGG
T ss_pred EEec--------------------------CCCCCCCcCHHHHHHHHHHHHHHHhccc
Confidence 232 3456777767777889999888876544
No 190
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=26.42 E-value=1.6e+02 Score=33.12 Aligned_cols=73 Identities=12% Similarity=0.168 Sum_probs=50.0
Q ss_pred eeCCCC---CHhhHHHHHHHHHHCCCCEEEece----------eccccCCC---------Cceeeecc-c--chHHHHHH
Q 003490 49 IHYPRS---TPDMWEDLIQKAKDGGLDVIETYV----------FWNVHEPS---------PGNYNFEG-R--YDLVRFIK 103 (816)
Q Consensus 49 ~Hy~R~---~~~~W~d~l~k~Ka~GlNtI~tyv----------fWn~hEp~---------~G~ydF~g-~--~dl~~fi~ 103 (816)
+|..|. ..+.-++.++++++.|+-.=.+++ .|+-..-. -+.++|.. . -|..+||+
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 455553 566778899999999987655544 34422211 13344432 1 28999999
Q ss_pred HHHHcCCEEEEecCceee
Q 003490 104 TIQKAGLYAHLRIGPYVC 121 (816)
Q Consensus 104 la~~~GL~vilR~GPYic 121 (816)
..++.|++|+|..=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999998888875
No 191
>PF12733 Cadherin-like: Cadherin-like beta sandwich domain
Probab=26.24 E-value=1.5e+02 Score=26.02 Aligned_cols=43 Identities=21% Similarity=0.347 Sum_probs=28.2
Q ss_pred eEEeCCcceEEEEEECCEEEEEEEcccccceeEEEeeeeccCCCcE-EEEEEe
Q 003490 494 TLIVQSTGHALHIFINGQLSGSAFGTREARRFMYTGKVNLRAGRNK-IALLSV 545 (816)
Q Consensus 494 ~L~v~~~~d~~~vfVNg~~vG~~~~~~~~~~~~~~~~i~l~~G~n~-L~ILve 545 (816)
.+........+.+.|||..+... .....++|..|.|. |.|-|.
T Consensus 28 ~v~a~~~~~~a~v~vng~~~~~~---------~~~~~i~L~~G~n~~i~i~Vt 71 (88)
T PF12733_consen 28 TVTATPEDSGATVTVNGVPVNSG---------GYSATIPLNEGENTVITITVT 71 (88)
T ss_pred EEEEEECCCCEEEEEcCEEccCC---------CcceeeEccCCCceEEEEEEE
Confidence 44444456779999999765332 11224567789888 888774
No 192
>PLN02429 triosephosphate isomerase
Probab=26.14 E-value=1e+02 Score=34.53 Aligned_cols=49 Identities=18% Similarity=0.059 Sum_probs=34.3
Q ss_pred HHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEEEecC
Q 003490 63 IQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (816)
Q Consensus 63 l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vilR~G 117 (816)
.+++|++|++.|-. .|..++-.|. +-+..+.+=++.|.++||.+|+++|
T Consensus 140 a~mLkd~Gv~~Vii-----GHSERR~~f~-Etd~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 140 VEQLKDLGCKWVIL-----GHSERRHVIG-EKDEFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred HHHHHHcCCCEEEe-----CccccCCCCC-cCHHHHHHHHHHHHHCcCEEEEEcC
Confidence 34788999988887 6776665554 2223333334449999999999998
No 193
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=25.43 E-value=1.1e+02 Score=32.82 Aligned_cols=77 Identities=19% Similarity=0.230 Sum_probs=55.3
Q ss_pred eEEEEEEeeCCC-CCHhhHHHHHHHHHHCCCCEEEeceeccccCC-----------CCceeeecccchHHHHHHHHHHcC
Q 003490 42 RILFSGSIHYPR-STPDMWEDLIQKAKDGGLDVIETYVFWNVHEP-----------SPGNYNFEGRYDLVRFIKTIQKAG 109 (816)
Q Consensus 42 ~~l~sG~~Hy~R-~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp-----------~~G~ydF~g~~dl~~fi~la~~~G 109 (816)
..+..|+-+..| ++.+.|.+.++++++.|.+.|-+. .-.|. .+...++.|..+|..++.+.+...
T Consensus 124 i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g---~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~ 200 (279)
T cd03789 124 VVLPPGASGPAKRWPAERFAALADRLLARGARVVLTG---GPAERELAEEIAAALGGPRVVNLAGKTSLRELAALLARAD 200 (279)
T ss_pred EEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEe---chhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCC
Confidence 333444444444 699999999999998887766432 22221 245578889899999999999999
Q ss_pred CEEEEecCceee
Q 003490 110 LYAHLRIGPYVC 121 (816)
Q Consensus 110 L~vilR~GPYic 121 (816)
+.|-...||.--
T Consensus 201 l~I~~Dsg~~Hl 212 (279)
T cd03789 201 LVVTNDSGPMHL 212 (279)
T ss_pred EEEeeCCHHHHH
Confidence 999888877443
No 194
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=25.39 E-value=2.5e+02 Score=28.79 Aligned_cols=78 Identities=17% Similarity=0.183 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHCCCCEEEeceeccccCCCCceeee-------cccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCC
Q 003490 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNF-------EGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGF 129 (816)
Q Consensus 57 ~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF-------~g~~dl~~fi~la~~~GL~vilR~GPYicaEw~~GGl 129 (816)
.+++..++.+|++|+ .-|.|.| +.....+.|++.++..|+ ..++
T Consensus 42 ~~~~~n~~~A~~aGl--------------~vG~Yhf~~~~~~~~a~~eA~~f~~~~~~~~~---------------~~~~ 92 (192)
T cd06522 42 PYAASQIANAKAAGL--------------KVSAYHYAHYTSAADAQAEARYFANTAKSLGL---------------SKNT 92 (192)
T ss_pred hHHHHHHHHHHHCCC--------------eeEEEEEEecCChHHHHHHHHHHHHHHHHcCC---------------CCCC
Q ss_pred CccccccCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCC--ceE
Q 003490 130 PVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGG--PII 177 (816)
Q Consensus 130 P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gG--pII 177 (816)
|.|| +++-.+. ...+.+++.+.+++|+ ..|+ |+|
T Consensus 93 ~~~l----D~E~~~~----~~~~~~~~~~F~~~v~------~~g~~~~~i 128 (192)
T cd06522 93 VMVA----DMEDSSS----SGNATANVNAFWQTMK------AAGYKNTDV 128 (192)
T ss_pred ceEE----EeecCCC----cchHHHHHHHHHHHHH------HcCCCCcEE
No 195
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=25.13 E-value=2.1e+02 Score=31.06 Aligned_cols=82 Identities=17% Similarity=0.255 Sum_probs=57.7
Q ss_pred eeEEEecCeEEECCEEeEEEEEEeeCCCC-CHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeec--ccchHHHHH
Q 003490 26 CSVTYDRKALLINGQRRILFSGSIHYPRS-TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFE--GRYDLVRFI 102 (816)
Q Consensus 26 ~~v~~d~~~~~idG~~~~l~sG~~Hy~R~-~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~--g~~dl~~fi 102 (816)
..|.+. .+.+.+..++++.| +-.+ ..+.-.+..+.+|+.|....+.|+|=+...| |.|. |..-|..+-
T Consensus 12 s~i~~~--~~~~g~~~~~~IAG---pc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp----~s~~g~g~~gl~~l~ 82 (260)
T TIGR01361 12 TVVDVG--GVKIGEGSPIVIAG---PCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSP----YSFQGLGEEGLKLLR 82 (260)
T ss_pred CEEEEC--CEEEcCCcEEEEEe---CCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCC----ccccccHHHHHHHHH
Confidence 445553 35565554667887 2222 5666667888899999998888888755444 4565 456788888
Q ss_pred HHHHHcCCEEEEec
Q 003490 103 KTIQKAGLYAHLRI 116 (816)
Q Consensus 103 ~la~~~GL~vilR~ 116 (816)
+.|++.||.++-.|
T Consensus 83 ~~~~~~Gl~~~t~~ 96 (260)
T TIGR01361 83 RAADEHGLPVVTEV 96 (260)
T ss_pred HHHHHhCCCEEEee
Confidence 89999999888775
No 196
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=25.12 E-value=75 Score=35.98 Aligned_cols=66 Identities=12% Similarity=0.078 Sum_probs=45.5
Q ss_pred EeeCCCCCHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEEEec
Q 003490 48 SIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (816)
Q Consensus 48 ~~Hy~R~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vilR~ 116 (816)
+-++ |.+...=....+.++++|-++|-+.|+|.-.++.+ -+-.-..+|.++.+.|+++||-+++-+
T Consensus 98 t~~g-r~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~--~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 98 TAPG-RLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDDA--INDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred CCCC-CCccccccccHHHHHHcCCCEEEEEEEeCCCcchH--HHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 3444 55443322347889999999999999999553310 001122479999999999999988863
No 197
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=25.05 E-value=1e+02 Score=38.13 Aligned_cols=55 Identities=29% Similarity=0.410 Sum_probs=41.4
Q ss_pred HHHHHHHCCCCEEEe-ceeccccCCCC---c-----------------eeeecc-----cchHHHHHHHHHHcCCEEEEe
Q 003490 62 LIQKAKDGGLDVIET-YVFWNVHEPSP---G-----------------NYNFEG-----RYDLVRFIKTIQKAGLYAHLR 115 (816)
Q Consensus 62 ~l~k~Ka~GlNtI~t-yvfWn~hEp~~---G-----------------~ydF~g-----~~dl~~fi~la~~~GL~vilR 115 (816)
.|.-+|++|+++||. .|+.-..|+.. | .|--++ .+.+..+|+.++++||-|||.
T Consensus 205 ~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 205 IIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 388999999999996 68766666543 2 222222 247888999999999999998
Q ss_pred c
Q 003490 116 I 116 (816)
Q Consensus 116 ~ 116 (816)
.
T Consensus 285 V 285 (697)
T COG1523 285 V 285 (697)
T ss_pred E
Confidence 4
No 198
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=25.04 E-value=94 Score=32.32 Aligned_cols=70 Identities=20% Similarity=0.236 Sum_probs=39.6
Q ss_pred EEeeCCCCCHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeee---cccchHHHHHHHHHHcCCEEEEecCceee
Q 003490 47 GSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNF---EGRYDLVRFIKTIQKAGLYAHLRIGPYVC 121 (816)
Q Consensus 47 G~~Hy~R~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF---~g~~dl~~fi~la~~~GL~vilR~GPYic 121 (816)
|.=-..|+..+|--..-+.+|+.|+.++-.---=..|-.. +|-+ .| .+++=+... +..-++|+||||..|
T Consensus 99 GadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~sS--rFlY~k~KG--EvE~~v~eL-~F~~~~i~RPG~ll~ 171 (238)
T KOG4039|consen 99 GADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADPSS--RFLYMKMKG--EVERDVIEL-DFKHIIILRPGPLLG 171 (238)
T ss_pred ccCceEeechHHHHHHHHHHHhCCCeEEEEEeccCCCccc--ceeeeeccc--hhhhhhhhc-cccEEEEecCcceec
Confidence 3333458899999999999999999776542222222211 1211 12 121111111 234568999999766
No 199
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=25.03 E-value=1.1e+02 Score=34.39 Aligned_cols=44 Identities=20% Similarity=0.242 Sum_probs=27.5
Q ss_pred ecCeEEECCEEeEEEEEEeeCCCCCHhhHHHHH-HHHHHCCCCEEEe
Q 003490 31 DRKALLINGQRRILFSGSIHYPRSTPDMWEDLI-QKAKDGGLDVIET 76 (816)
Q Consensus 31 d~~~~~idG~~~~l~sG~~Hy~R~~~~~W~d~l-~k~Ka~GlNtI~t 76 (816)
|.+.+.|||||+++|=..-.-+ ....+-+.+ +.+|++|+.-|-.
T Consensus 150 D~rYikVdGKPv~~Iy~p~~~p--d~~~~~~~wr~~a~~~G~~giyi 194 (345)
T PF14307_consen 150 DPRYIKVDGKPVFLIYRPGDIP--DIKEMIERWREEAKEAGLPGIYI 194 (345)
T ss_pred CCCceeECCEEEEEEECccccc--CHHHHHHHHHHHHHHcCCCceEE
Confidence 7899999999999883331111 122222222 5678899886654
No 200
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=24.90 E-value=1.1e+02 Score=32.99 Aligned_cols=65 Identities=22% Similarity=0.280 Sum_probs=39.8
Q ss_pred CCCHhhHHHHHHHHHHCCCCEEEeceecc-cc---CCCCceeee-cccchHHHHHHHHHHcCCEEEEecC
Q 003490 53 RSTPDMWEDLIQKAKDGGLDVIETYVFWN-VH---EPSPGNYNF-EGRYDLVRFIKTIQKAGLYAHLRIG 117 (816)
Q Consensus 53 R~~~~~W~d~l~k~Ka~GlNtI~tyvfWn-~h---Ep~~G~ydF-~g~~dl~~fi~la~~~GL~vilR~G 117 (816)
..+++.|++..+..|+.|+..+.|.+--. +. +...-.|-- |++..=..||+.+++.|+-|||-.|
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG 121 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTG 121 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-T
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECC
Confidence 36899999999999999999999954311 11 111222222 3444455688999999999999977
No 201
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=24.90 E-value=90 Score=36.06 Aligned_cols=56 Identities=21% Similarity=0.329 Sum_probs=39.6
Q ss_pred HHHHHHHHCCCCEEEe-ceec---cccCCCCcee-----eecccchHHHHHHHHHHcCCEEEEec
Q 003490 61 DLIQKAKDGGLDVIET-YVFW---NVHEPSPGNY-----NFEGRYDLVRFIKTIQKAGLYAHLRI 116 (816)
Q Consensus 61 d~l~k~Ka~GlNtI~t-yvfW---n~hEp~~G~y-----dF~g~~dl~~fi~la~~~GL~vilR~ 116 (816)
+.|.-+|++|+++|-+ .++= ..|---.-.| .|.+..|+.++++.|++.||+||+-.
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 6788899999999954 2331 1221111000 57778899999999999999999873
No 202
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=24.87 E-value=64 Score=33.63 Aligned_cols=77 Identities=22% Similarity=0.337 Sum_probs=52.2
Q ss_pred CEE-eEEEEEEeeC-CCCCHhhHHHHHHHHHHCCCCEEEeceeccccC--------CCCc----eeeecccchHHHHHHH
Q 003490 39 GQR-RILFSGSIHY-PRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHE--------PSPG----NYNFEGRYDLVRFIKT 104 (816)
Q Consensus 39 G~~-~~l~sG~~Hy-~R~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hE--------p~~G----~ydF~g~~dl~~fi~l 104 (816)
+++ ..+.-|+-+. -|+|.|.|.+.++++++-| ..+.++|.-.| -.++ ..++.|..+|..++.+
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~---~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~al 180 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERG---YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAAL 180 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT----EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhC---ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHH
Confidence 444 4444454443 4479999999999999998 55668887666 1223 5889999999999999
Q ss_pred HHHcCCEEEEecCc
Q 003490 105 IQKAGLYAHLRIGP 118 (816)
Q Consensus 105 a~~~GL~vilR~GP 118 (816)
++...+.|-...||
T Consensus 181 i~~a~~~I~~Dtg~ 194 (247)
T PF01075_consen 181 ISRADLVIGNDTGP 194 (247)
T ss_dssp HHTSSEEEEESSHH
T ss_pred HhcCCEEEecCChH
Confidence 99999988888776
No 203
>PRK06703 flavodoxin; Provisional
Probab=24.83 E-value=3.2e+02 Score=26.44 Aligned_cols=103 Identities=12% Similarity=0.030 Sum_probs=59.8
Q ss_pred ECCEEeEEEEEEeeCCCCCHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEEEec
Q 003490 37 INGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (816)
Q Consensus 37 idG~~~~l~sG~~Hy~R~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vilR~ 116 (816)
+..-..++++-..+-.-.+|+.+.+-+..+++.-++.....+|-...- .|. ........+-+..++.|..++.++
T Consensus 46 l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~g~~----~y~-~~~~a~~~l~~~l~~~G~~~~~~~ 120 (151)
T PRK06703 46 LLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGSGDT----AYP-LFCEAVTIFEERLVERGAELVQEG 120 (151)
T ss_pred HhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEccCCC----ChH-HHHHHHHHHHHHHHHCCCEEcccC
Confidence 444455566554443334555677778877766666656666632210 011 022456667778889999887763
Q ss_pred CceeeeecCCCCCCccccccCCeEeecCChhHHHHHHHHHHHHHHHHH
Q 003490 117 GPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (816)
Q Consensus 117 GPYicaEw~~GGlP~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~ 164 (816)
+-.+ .-.++..-+++++.|.++|++.++
T Consensus 121 ---~~~~-----------------~~p~~~~~~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 121 ---LKIE-----------------LAPETDEDVEKCSNFAIAFAEKFA 148 (151)
T ss_pred ---eEEe-----------------cCCCchhHHHHHHHHHHHHHHHHH
Confidence 1111 111124677888999999988776
No 204
>PLN02540 methylenetetrahydrofolate reductase
Probab=24.78 E-value=1.7e+02 Score=35.47 Aligned_cols=90 Identities=16% Similarity=0.242 Sum_probs=61.2
Q ss_pred HHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcC--CEEEEecCceee-------eecCCCCCCcc
Q 003490 62 LIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAG--LYAHLRIGPYVC-------AEWNFGGFPVW 132 (816)
Q Consensus 62 ~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~G--L~vilR~GPYic-------aEw~~GGlP~W 132 (816)
+|++=.++|.+-|.|-.| ||.+ .+.+|++.|+++| +.+|.-+-|-.. ++|..--+|.|
T Consensus 161 ~Lk~KvdAGAdFiITQlf----------FD~d---~f~~f~~~~r~~Gi~vPIipGImPI~S~k~l~r~~~l~Gi~IP~~ 227 (565)
T PLN02540 161 YLKEKVDAGADLIITQLF----------YDTD---IFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAE 227 (565)
T ss_pred HHHHHHHcCCCEEeeccc----------cCHH---HHHHHHHHHHhcCCCCCEEeeecccCCHHHHHHHHhccCCcCCHH
Confidence 444445679999999544 4444 7889999999998 556777666443 34665567999
Q ss_pred ccccCCeEeecCChhHHHHHHHHHHHHHHHHHh
Q 003490 133 LKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKS 165 (816)
Q Consensus 133 L~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~ 165 (816)
+.+.=+ ....+++..++.--++..++++.|.+
T Consensus 228 i~~rLe-~~kddde~v~~~Gieia~e~~~~L~~ 259 (565)
T PLN02540 228 ITAALE-PIKDNDEAVKAYGIHLGTEMCKKILA 259 (565)
T ss_pred HHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 876311 12345566677777788888887773
No 205
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=24.66 E-value=2.8e+02 Score=26.20 Aligned_cols=67 Identities=16% Similarity=0.274 Sum_probs=0.0
Q ss_pred EEEEEEEecCCCCcccccCCCCceEEeCCcceEEEEEECCEEEEEEEcccccceeEEEeeeeccCC-CcEEEEEEec
Q 003490 471 YLWYITSVDIGSSESFLHGGELPTLIVQSTGHALHIFINGQLSGSAFGTREARRFMYTGKVNLRAG-RNKIALLSVA 546 (816)
Q Consensus 471 YlwY~T~i~~~~~~~~~~~g~~~~L~v~~~~d~~~vfVNg~~vG~~~~~~~~~~~~~~~~i~l~~G-~n~L~ILven 546 (816)
.+-+++.|..+.++.+ ++.+ ...|.+.+||||+.+-...+... ........+.|.+| .+.|.|....
T Consensus 45 ~~~~~g~i~~~~~G~y-------~f~~-~~~~~~~l~Idg~~vid~~~~~~-~~~~~~~~v~l~~g~~~~i~v~y~~ 112 (136)
T smart00758 45 SVRWTGYLKPPEDGEY-------TFSI-TSDDGARLWIDGKLVIDNWGKHE-ARPSTSSTLYLLAGGTYPIRIEYFE 112 (136)
T ss_pred EEEEEEEEECCCCccE-------EEEE-EcCCcEEEEECCcEEEcCCccCC-CccccceeEEEeCCcEEEEEEEEEe
No 206
>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.35 E-value=3.1e+02 Score=27.21 Aligned_cols=47 Identities=23% Similarity=0.340 Sum_probs=33.4
Q ss_pred HHHHHHHCCCCEEEeceeccccCCCCceeeecccc--hHHHHHHHHHHcCCEEEE
Q 003490 62 LIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRY--DLVRFIKTIQKAGLYAHL 114 (816)
Q Consensus 62 ~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~--dl~~fi~la~~~GL~vil 114 (816)
.++.+.+.+-.||+|-.+|- .|.-.|.|-+ +|-+.+. ++...+.|+.
T Consensus 39 t~qeLeal~~~T~ete~Pw~-----~gn~rf~Gvsls~Ll~~l~-ak~tslt~iA 87 (155)
T COG3915 39 TLQELEALPDETIETETPWT-----QGNTRFKGVSLSALLAWLG-AKQTSLTVIA 87 (155)
T ss_pred cHHHHhcCCcceEEEecCcc-----cCceeecceeHHHHHHHhh-ccCcceEEEE
Confidence 35677789999999999994 4666788753 5656666 5555666663
No 207
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=24.08 E-value=1.2e+02 Score=32.50 Aligned_cols=60 Identities=15% Similarity=0.060 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHCCCCEEEeceeccccCCCC-ceeeecccchHHHHHHHHHHcCCEEEEecC
Q 003490 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPSP-GNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (816)
Q Consensus 57 ~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~-G~ydF~g~~dl~~fi~la~~~GL~vilR~G 117 (816)
+++++.|+.++++|.+.|.+.-+-...++.. -.++. -...|.++.++|+++|+.+.+.+-
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR-FIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH-HHHHHHHHHHHHHHhCCEEEEEec
Confidence 5578889999999999998631100001111 01110 113578888999999999988863
No 208
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=23.89 E-value=1.4e+02 Score=32.34 Aligned_cols=49 Identities=22% Similarity=0.237 Sum_probs=37.1
Q ss_pred HHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEEEecC
Q 003490 63 IQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (816)
Q Consensus 63 l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vilR~G 117 (816)
..++|++|.+.|-. -|..++-.|+ +-+..+.+=++.|.++||.+||+.|
T Consensus 81 ~~mL~d~G~~~vii-----GHSERR~~~~-E~d~~i~~K~~aa~~~Gl~pIlCvG 129 (251)
T COG0149 81 AEMLKDLGAKYVLI-----GHSERRLYFG-ETDELIAKKVKAAKEAGLTPILCVG 129 (251)
T ss_pred HHHHHHcCCCEEEE-----Cccccccccc-cchHHHHHHHHHHHHCCCeEEEEcC
Confidence 34688999999887 6665554444 2344566888899999999999987
No 209
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=23.71 E-value=1.4e+02 Score=33.95 Aligned_cols=71 Identities=18% Similarity=0.228 Sum_probs=45.5
Q ss_pred CCEEeEEEEEEeeC---------------------CCCCHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccc
Q 003490 38 NGQRRILFSGSIHY---------------------PRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRY 96 (816)
Q Consensus 38 dG~~~~l~sG~~Hy---------------------~R~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~ 96 (816)
.+++.++.|.+-|| .|+..+.-++.|++.++.|..-+ .|.=+.=...-|.+|
T Consensus 139 ~~~~~i~~s~~aH~S~~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~--~vvat~Gtt~~Ga~D----- 211 (373)
T PF00282_consen 139 IPKPVIYVSEQAHYSIEKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPF--AVVATAGTTNTGAID----- 211 (373)
T ss_dssp CSSEEEEEETTS-THHHHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEE--EEEEEBS-TTTSBB------
T ss_pred ccccccccccccccHHHHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccce--eeeccCCCccccccc-----
Confidence 45677888888887 34555556667777788876321 333445556667766
Q ss_pred hHHHHHHHHHHcCCEEEEe
Q 003490 97 DLVRFIKTIQKAGLYAHLR 115 (816)
Q Consensus 97 dl~~fi~la~~~GL~vilR 115 (816)
||.+..++|+++++|+.+.
T Consensus 212 ~l~~i~~i~~~~~~wlHVD 230 (373)
T PF00282_consen 212 PLEEIADICEKYNIWLHVD 230 (373)
T ss_dssp SHHHHHHHHHHCT-EEEEE
T ss_pred CHHHHhhhccccceeeeec
Confidence 8899999999988877765
No 210
>PLN02561 triosephosphate isomerase
Probab=23.70 E-value=1.4e+02 Score=32.42 Aligned_cols=49 Identities=12% Similarity=0.015 Sum_probs=39.5
Q ss_pred HHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEEEecC
Q 003490 63 IQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (816)
Q Consensus 63 l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vilR~G 117 (816)
..++|++|++.|-. .|..++..|. +-+..+.+=++.|.++||.+|+++|
T Consensus 81 ~~mL~d~G~~~vii-----GHSERR~~f~-Etd~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 81 AEMLVNLGIPWVIL-----GHSERRALLG-ESNEFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred HHHHHHcCCCEEEE-----CcccccCccC-CChHHHHHHHHHHHHCcCEEEEEcC
Confidence 45789999999988 7777766554 3456778888899999999999998
No 211
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=23.56 E-value=7.1e+02 Score=28.19 Aligned_cols=57 Identities=19% Similarity=0.230 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCEEEEecCceeeeecCCCCCCccccccCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEE
Q 003490 99 VRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIIL 178 (816)
Q Consensus 99 ~~fi~la~~~GL~vilR~GPYicaEw~~GGlP~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~ 178 (816)
.++++.|+++|+.|++- |++|. +. ..|+. .-++|++.+++.++++.+ + +
T Consensus 67 ~~~~~~A~~~~v~v~~~-----------~~~~~-----~~----l~~~~---~R~~fi~siv~~~~~~gf---D-----G 115 (358)
T cd02875 67 DELLCYAHSKGVRLVLK-----------GDVPL-----EQ----ISNPT---YRTQWIQQKVELAKSQFM---D-----G 115 (358)
T ss_pred HHHHHHHHHcCCEEEEE-----------CccCH-----HH----cCCHH---HHHHHHHHHHHHHHHhCC---C-----e
Confidence 58899999999999853 23331 11 12342 345789999999996654 1 4
Q ss_pred eccccccc
Q 003490 179 SQIENEYG 186 (816)
Q Consensus 179 ~QiENEyg 186 (816)
+.|+=||-
T Consensus 116 IdIDwE~p 123 (358)
T cd02875 116 INIDIEQP 123 (358)
T ss_pred EEEcccCC
Confidence 66666664
No 212
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.33 E-value=26 Score=35.86 Aligned_cols=66 Identities=21% Similarity=0.339 Sum_probs=45.4
Q ss_pred eEEEEEEeeCCCC---CHhhHHHHHHHHHHCCCCEEEeceeccccCCCCc--eeeecccchHHHHHHHHHHcCCEEEEe
Q 003490 42 RILFSGSIHYPRS---TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPG--NYNFEGRYDLVRFIKTIQKAGLYAHLR 115 (816)
Q Consensus 42 ~~l~sG~~Hy~R~---~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G--~ydF~g~~dl~~fi~la~~~GL~vilR 115 (816)
...-+|--.|.|+ .|-.-+ +-+.++|.+.+-. -.--+.| -|||-...+|..|+++|+++||.+-|-
T Consensus 116 ~VVAaGYaDa~Rvgsv~Pl~~P---~vaa~ag~DvaMv-----DTaiKDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 116 KVVAAGYADAHRVGSVSPLLLP---EVAAEAGADVAMV-----DTAIKDGKSLFDFMDEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred eEEeccccchhhccCcCccccH---HHHHhcCCCEEEE-----ecccccchhHHhhhcHHHHHHHHHHHHHcchHHHhc
Confidence 3455676777775 344343 3466788887543 1122344 599988899999999999999987665
No 213
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=22.99 E-value=1.7e+02 Score=32.59 Aligned_cols=65 Identities=15% Similarity=0.270 Sum_probs=46.1
Q ss_pred CCCCCHhhHHHHHHHHHHCCCCEEEeceeccccCC-------------CCceeeecccchHHHHHHHHHHcCCEEEEecC
Q 003490 51 YPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEP-------------SPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (816)
Q Consensus 51 y~R~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp-------------~~G~ydF~g~~dl~~fi~la~~~GL~vilR~G 117 (816)
.-|+|+|.|.+.++.+++.|+..| +++.-.|. .+...|..|..+|..+..+.+...++|--..|
T Consensus 196 ~K~Wp~e~fa~l~~~L~~~~~~vv---l~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~l~v~nDSG 272 (352)
T PRK10422 196 FKCWDNDKFSAVIDALQARGYEVV---LTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALIDHAQLFIGVDSA 272 (352)
T ss_pred ccCCCHHHHHHHHHHHHHCCCeEE---EEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHhCCEEEecCCH
Confidence 345799999999999988887544 44443321 12346777877888888888888887777666
Q ss_pred c
Q 003490 118 P 118 (816)
Q Consensus 118 P 118 (816)
|
T Consensus 273 p 273 (352)
T PRK10422 273 P 273 (352)
T ss_pred H
Confidence 5
No 214
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=22.95 E-value=5e+02 Score=26.15 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhcccccccCCceEEecccccccccccccCcccHHHHHHHHHHH
Q 003490 152 MQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLGAAGHNYMTWAAKMA 207 (816)
Q Consensus 152 ~~~~~~~i~~~l~~~~l~~~~gGpII~~QiENEyg~~~~~~~~~~~~Y~~~l~~~~ 207 (816)
+.+-+.+++..++ ..+.++|++ .||-|.-.-.+.+..+.|.+.+..+-
T Consensus 101 ~~~~i~~l~~~l~------~~~~~~viV--snEvG~g~vp~~~~~r~f~d~lG~ln 148 (169)
T cd00544 101 IADEIDALLAAVR------NKPGTLILV--SNEVGLGVVPENALGRRFRDELGRLN 148 (169)
T ss_pred HHHHHHHHHHHHH------cCCCcEEEE--ECCcCCCCCCCCHHHHHHHHHHHHHH
Confidence 4445566667666 356788887 58988643335567888987655443
No 215
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=22.90 E-value=2e+02 Score=31.36 Aligned_cols=49 Identities=27% Similarity=0.318 Sum_probs=40.2
Q ss_pred CCHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEEE
Q 003490 54 STPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHL 114 (816)
Q Consensus 54 ~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vil 114 (816)
.|.+.=++.++++.+.|++.|+++++.|- + ..+.+.++.|+++|+.|..
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~---------~---~~~~~~i~~ak~~G~~v~~ 136 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALND---------V---RNLEVAIKAVKKAGKHVEG 136 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCCh---------H---HHHHHHHHHHHHCCCeEEE
Confidence 45556678899999999999999887664 1 2788999999999988775
No 216
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=22.86 E-value=57 Score=35.14 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=37.9
Q ss_pred HHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEEEecC
Q 003490 63 IQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (816)
Q Consensus 63 l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vilR~G 117 (816)
..++|+.|++.|-. .|..++--|. +.+.++.+=++.|.++||.+|+++|
T Consensus 77 ~~mL~d~G~~~vii-----GHSERR~~f~-Etd~~i~~Kv~~al~~gl~pIvCvG 125 (244)
T PF00121_consen 77 AEMLKDLGCKYVII-----GHSERRQYFG-ETDEIINKKVKAALENGLTPIVCVG 125 (244)
T ss_dssp HHHHHHTTESEEEE-----SCHHHHHHST--BHHHHHHHHHHHHHTT-EEEEEES
T ss_pred HHHHHHhhCCEEEe-----ccccccCccc-cccHHHHHHHHHHHHCCCEEEEEec
Confidence 45889999998887 5655544443 5567899999999999999999987
No 217
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) have been found in Bacteroides fragilis. in Butyrivibrio fibrisolvens. It is a hexamer of identical chains and in some protozoa. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006807 nitrogen compound metabolic process; PDB: 2J9I_E 3ZXV_D 1HTQ_D 1HTO_F 2BVC_F 2WGS_G 3ZXR_B 2WHI_D 3NG0_A 1LGR_C ....
Probab=22.77 E-value=1.5e+02 Score=31.75 Aligned_cols=61 Identities=30% Similarity=0.562 Sum_probs=43.1
Q ss_pred CHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeec-c----cc---hHH--H-HH-HHHHHcCCEEEEecCcee
Q 003490 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFE-G----RY---DLV--R-FI-KTIQKAGLYAHLRIGPYV 120 (816)
Q Consensus 55 ~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~-g----~~---dl~--~-fi-~la~~~GL~vilR~GPYi 120 (816)
..+..++.++.+.++|+++-.. .||-.||||.+. + .. ++. | .| ++|+++||.+.+-|=|+.
T Consensus 67 ~~~~~~~i~~~l~~~Gi~ve~~-----h~E~gpgQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~atFmpKP~~ 139 (259)
T PF00120_consen 67 GEDFLEEIVDALEQAGIPVEQI-----HHEVGPGQYEINLGPCDPLEAADNLVLFKEIIKEVARKHGLTATFMPKPFS 139 (259)
T ss_dssp THHHHHHHHHHHHHCT--EEEE-----EEESSTTEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEEE-SSSSST
T ss_pred HHHHHHHHHHHHHHhhcccccc-----ccccchHhhccccccCcHHHHHHHHHHHHHHHHHHHHHcCCceeeeccccC
Confidence 4677889999999999998888 899999999774 1 11 111 1 12 358899999999988764
No 218
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.72 E-value=1.7e+02 Score=23.58 Aligned_cols=55 Identities=16% Similarity=0.322 Sum_probs=38.9
Q ss_pred HhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEE
Q 003490 56 PDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYA 112 (816)
Q Consensus 56 ~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~v 112 (816)
|..-.+.+.-+.+.|+|.+.++. +..++.....+-|.-+ +.++.++..+++|..|
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 33456778889999999998876 3333234555666533 4889999999999765
No 219
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=22.01 E-value=1.6e+02 Score=35.81 Aligned_cols=54 Identities=24% Similarity=0.369 Sum_probs=45.0
Q ss_pred eeCCCCCHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEEE
Q 003490 49 IHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHL 114 (816)
Q Consensus 49 ~Hy~R~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vil 114 (816)
+=|.|.|.+.-+..++++++.|++.|+++...|.. +.+...++.|+++|+.+..
T Consensus 89 vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~------------~~~~~ai~~ak~~G~~~~~ 142 (593)
T PRK14040 89 LGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP------------RNLETALKAVRKVGAHAQG 142 (593)
T ss_pred eccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH------------HHHHHHHHHHHHcCCeEEE
Confidence 55777788878889999999999999998777653 3788999999999998643
No 220
>PLN02389 biotin synthase
Probab=21.77 E-value=1.2e+02 Score=34.81 Aligned_cols=50 Identities=12% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCEEEecee--ccccCCCCceeeecccchHHHHHHHHHHcCCEE
Q 003490 60 EDLIQKAKDGGLDVIETYVF--WNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYA 112 (816)
Q Consensus 60 ~d~l~k~Ka~GlNtI~tyvf--Wn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~v 112 (816)
++.++++|++|++.+..-+- -..+...-..-+|+ +..+.++.|++.||.|
T Consensus 178 ~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e---~rl~ti~~a~~~Gi~v 229 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYD---DRLETLEAVREAGISV 229 (379)
T ss_pred HHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHH---HHHHHHHHHHHcCCeE
No 221
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=21.67 E-value=2.4e+02 Score=30.71 Aligned_cols=60 Identities=22% Similarity=0.309 Sum_probs=40.6
Q ss_pred CHhhHHHHHHHHHHCCCCEEEeceeccccCCCC---ceeeecccchHHHHHHHHHHc-CCEEEEecCc
Q 003490 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSP---GNYNFEGRYDLVRFIKTIQKA-GLYAHLRIGP 118 (816)
Q Consensus 55 ~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~---G~ydF~g~~dl~~fi~la~~~-GL~vilR~GP 118 (816)
.++.|.+..++++++|++.|+..+. -|.. |..--..-+.+.++++.+++. ++-|.++.+|
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~----cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~ 163 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNIS----CPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTP 163 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECC----CCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCC
Confidence 5788999999999999999999643 3332 221111124566778888876 7777777654
No 222
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=21.38 E-value=1.7e+02 Score=28.54 Aligned_cols=91 Identities=13% Similarity=0.192 Sum_probs=46.2
Q ss_pred CHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeec-ccchHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccc
Q 003490 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFE-GRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWL 133 (816)
Q Consensus 55 ~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~-g~~dl~~fi~la~~~GL~vilR~GPYicaEw~~GGlP~WL 133 (816)
.+.+.+..++.++++|+..+-+|.....+. ......++ |..|-.+-+..|+++|+. . |-|.++
T Consensus 36 ~k~Lt~~e~~~i~~~Gl~i~pIyq~~~~~~-~~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gt~IYf 99 (136)
T PF08924_consen 36 QKNLTAGEVQDIRAAGLRIFPIYQGGGRET-SDFTYGYAQGVADARDAVAAARALGFP----A-----------GTPIYF 99 (136)
T ss_dssp --B--HHHHHHHHHTT-EEEEEE---------S-B--HHHHHHHHHHHHHHHHHTT------S-----------S-EEEE
T ss_pred cCCCCHHHHHHHHHCCCEEEEEEecccccc-cccccHHHHHHHHHHHHHHHHHHcCCC----C-----------CCEEEE
Confidence 468899999999999999999988872221 11122222 678999999999999983 1 334444
Q ss_pred cccCCeEeecCChhHHHHHHHHHHHHHHHHHh
Q 003490 134 KYVPGISFRTDNEPFKRAMQGFTEKIVNLMKS 165 (816)
Q Consensus 134 ~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~ 165 (816)
.-+- -..+..+...+..|++.+.+.|..
T Consensus 100 avD~----d~~~~~~~~~i~~Y~~g~~~~l~~ 127 (136)
T PF08924_consen 100 AVDY----DATDAECDSAILPYFRGWNSALGA 127 (136)
T ss_dssp E--T----S-B-HH-------HHHHHHHHHGG
T ss_pred Eeec----CCCchhhhhHHHHHHHHHHHHHhh
Confidence 3211 124566777788888888888874
No 223
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=21.33 E-value=2.1e+02 Score=31.94 Aligned_cols=60 Identities=10% Similarity=0.156 Sum_probs=46.4
Q ss_pred CCHhhHHHHHHHHHHCCCCEEEece----eccccC---CC---Cc----eeeecccchHHHHHHHHHHcCCEEEEec
Q 003490 54 STPDMWEDLIQKAKDGGLDVIETYV----FWNVHE---PS---PG----NYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (816)
Q Consensus 54 ~~~~~W~d~l~k~Ka~GlNtI~tyv----fWn~hE---p~---~G----~ydF~g~~dl~~fi~la~~~GL~vilR~ 116 (816)
.+.+...+.|+.|...++|+...++ -|.+-- |+ .| .|. ..|+..+++.|++.|+.||-.+
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT---~~di~elv~yA~~rgI~vIPEI 88 (311)
T cd06570 15 IPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYT---QEQIREVVAYARDRGIRVVPEI 88 (311)
T ss_pred cCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccC---HHHHHHHHHHHHHcCCEEEEee
Confidence 4689999999999999999999987 365421 11 22 333 3499999999999999999664
No 224
>PF08306 Glyco_hydro_98M: Glycosyl hydrolase family 98; InterPro: IPR013191 This domain is the putative catalytic domain of glycosyl hydrolase family 98 proteins.; PDB: 2VNO_B 2VNR_A 2VNG_B 2WMH_A 2WMG_A 2WMF_A 2WMK_A 2WMJ_B 2WMI_B.
Probab=21.26 E-value=73 Score=35.62 Aligned_cols=89 Identities=21% Similarity=0.396 Sum_probs=49.4
Q ss_pred EEEEEEee------CCCCCHhhHHHHHHHHHHC-CCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEEEe
Q 003490 43 ILFSGSIH------YPRSTPDMWEDLIQKAKDG-GLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLR 115 (816)
Q Consensus 43 ~l~sG~~H------y~R~~~~~W~d~l~k~Ka~-GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vilR 115 (816)
++.||. | +.+++.+-|++-+++--.. |+|-+|-| |..-++.. ....++|++|+++|-|.|
T Consensus 104 q~~sgG-~~~~y~~~~~~~~~~~~e~fr~Ypnf~G~n~~Eqf--Wgf~~~~~--------~~~A~lLkl~akYGGy~i-- 170 (324)
T PF08306_consen 104 QPSSGG-HFPDYSAYHDIENTWYEEFFRDYPNFQGFNYAEQF--WGFDDPGS--------EHFADLLKLCAKYGGYFI-- 170 (324)
T ss_dssp EEEECC-G-TTT-GCCG--HHHHHHHHHH-TTEEEEEEE--T--TS--TTHH--------HHHHHHHHHHHHTT-EEE--
T ss_pred EecCCC-CCCCccccccCChHHHHHHHHhCccccccccHhhh--eecCCchh--------HHHHHHHHHHHHhCceEE--
Confidence 346777 8 4456777777777777665 99988885 44444432 378899999999998872
Q ss_pred cCceeeeecCC-CCCCccccccCCeEeecCChhHHHHHHHHH
Q 003490 116 IGPYVCAEWNF-GGFPVWLKYVPGISFRTDNEPFKRAMQGFT 156 (816)
Q Consensus 116 ~GPYicaEw~~-GGlP~WL~~~p~i~~Rt~d~~y~~~~~~~~ 156 (816)
=++-++ +.+-.|+-. ..++.|++++++|-
T Consensus 171 -----Ws~~~N~~am~k~~~~-------~~~~~~~~A~~~y~ 200 (324)
T PF08306_consen 171 -----WSDQNNPIAMEKWFGE-------QRNPEFKDACEKYS 200 (324)
T ss_dssp -----EE---GGGHHHHHCCC-------CCSHHHHHHHHHHG
T ss_pred -----eecCCChHHHHHhhhh-------ccCHHHHHHHHHhh
Confidence 122211 112223322 25677888777764
No 225
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.23 E-value=6.1e+02 Score=27.33 Aligned_cols=83 Identities=11% Similarity=0.094 Sum_probs=52.0
Q ss_pred HHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEE--EEecCceeeeecCCCCCCccccccC
Q 003490 60 EDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYA--HLRIGPYVCAEWNFGGFPVWLKYVP 137 (816)
Q Consensus 60 ~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~v--ilR~GPYicaEw~~GGlP~WL~~~p 137 (816)
.+.++.+++.|+++||.++-. |.--........+..+|-+.++++++.+ +.-=+||.
T Consensus 14 ~~a~~~~~~~G~~~~qif~~~----P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~----------------- 72 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFLKS----PRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYL----------------- 72 (274)
T ss_pred HHHHHHHHHhCCCEEEEEecC----ccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCee-----------------
Confidence 468899999999999996531 1111111112237888888999998863 33335553
Q ss_pred CeEeecCChhHHHHHHHHHHHHHHHHH
Q 003490 138 GISFRTDNEPFKRAMQGFTEKIVNLMK 164 (816)
Q Consensus 138 ~i~~Rt~d~~y~~~~~~~~~~i~~~l~ 164 (816)
+.+=+.|+.-++...+.+++.++.-+
T Consensus 73 -iNlas~~~~~r~~sv~~~~~~i~~A~ 98 (274)
T TIGR00587 73 -INLASPDEEKEEKSLDVLDEELKRCE 98 (274)
T ss_pred -eecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 22345567777776666666666555
No 226
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=21.08 E-value=6.5e+02 Score=29.15 Aligned_cols=86 Identities=15% Similarity=0.097 Sum_probs=47.1
Q ss_pred EeEEEEEEeeCCCCCHhhH----HHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEEEec
Q 003490 41 RRILFSGSIHYPRSTPDMW----EDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (816)
Q Consensus 41 ~~~l~sG~~Hy~R~~~~~W----~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vilR~ 116 (816)
..++++|.+.-...|+... .+.++++++.++. +|+. +|.-|+-. .+....++.++.|++|+-.+
T Consensus 41 D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~---v~~I-------~GNHD~~~--~l~~~~~~l~~~gi~vl~~~ 108 (407)
T PRK10966 41 DAIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQ---LVVL-------AGNHDSVA--TLNESRDLLAFLNTTVIASA 108 (407)
T ss_pred CEEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCc---EEEE-------cCCCCChh--hhhhHHHHHHHCCcEEEecc
Confidence 4577888886444444333 3456677777654 3443 34444332 24555677789999988553
Q ss_pred C-----ceeeeecCCCCCCccccccCC
Q 003490 117 G-----PYVCAEWNFGGFPVWLKYVPG 138 (816)
Q Consensus 117 G-----PYicaEw~~GGlP~WL~~~p~ 138 (816)
. ..|--+-..|...+|+.-.|=
T Consensus 109 ~~~~~~~~v~l~~~~g~~~~~i~~lPy 135 (407)
T PRK10966 109 SDDLGHQVIILPRRDGTPGAVLCAIPF 135 (407)
T ss_pred cccCCcceEEEecCCCCeeeEEEECCC
Confidence 1 112223345555566655443
No 227
>PRK10426 alpha-glucosidase; Provisional
Probab=20.72 E-value=9.5e+02 Score=29.61 Aligned_cols=66 Identities=17% Similarity=0.333 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHCCCCEEEece-eccccCCC----Cc--eeeeccc--chHHHHHHHHHHcCCEEEEecCceeee
Q 003490 57 DMWEDLIQKAKDGGLDVIETYV-FWNVHEPS----PG--NYNFEGR--YDLVRFIKTIQKAGLYAHLRIGPYVCA 122 (816)
Q Consensus 57 ~~W~d~l~k~Ka~GlNtI~tyv-fWn~hEp~----~G--~ydF~g~--~dl~~fi~la~~~GL~vilR~GPYica 122 (816)
+.-.+.++++|+.|+-+=.+++ .|...... +. .|.|+-. -|..++|+..++.|+++++-+=|||+.
T Consensus 221 ~~v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~ 295 (635)
T PRK10426 221 EVVQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLAS 295 (635)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCC
Confidence 4456789999999976544433 35422211 11 1233322 289999999999999999998888753
No 228
>PRK07094 biotin synthase; Provisional
Probab=20.61 E-value=94 Score=34.28 Aligned_cols=50 Identities=14% Similarity=0.104 Sum_probs=30.1
Q ss_pred HHHHHHHHHCCCCEEEecee---ccccCCCCceeeecccchHHHHHHHHHHcCCEE
Q 003490 60 EDLIQKAKDGGLDVIETYVF---WNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYA 112 (816)
Q Consensus 60 ~d~l~k~Ka~GlNtI~tyvf---Wn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~v 112 (816)
++.+++||++|++.|...+- -..++......+++ +..+.++.++++|+.|
T Consensus 129 ~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~---~~~~~i~~l~~~Gi~v 181 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFE---NRIACLKDLKELGYEV 181 (323)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHH---HHHHHHHHHHHcCCee
Confidence 35677788888887765332 12222221234444 6777888888999864
No 229
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=20.45 E-value=77 Score=35.72 Aligned_cols=51 Identities=20% Similarity=0.342 Sum_probs=32.2
Q ss_pred HHHHHHHHHCCCCEEE-----eceeccccCCCCceeeecccchHHHHHHHHHHcCCEEE
Q 003490 60 EDLIQKAKDGGLDVIE-----TYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAH 113 (816)
Q Consensus 60 ~d~l~k~Ka~GlNtI~-----tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vi 113 (816)
++.|+++|++|++.+- ++..--.+.-.++....+ +..+.++.|+++|+.+-
T Consensus 150 ~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~---~~l~~i~~a~~~Gi~~~ 205 (351)
T TIGR03700 150 EEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAE---RWLEIHRTAHELGLKTN 205 (351)
T ss_pred HHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHH---HHHHHHHHHHHcCCCcc
Confidence 5668889999986553 322222233335544333 55688999999999763
No 230
>PLN02784 alpha-amylase
Probab=20.31 E-value=2e+02 Score=36.62 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=38.5
Q ss_pred HHHHHHHHHCCCCEEEeceeccccCC---CCce-ee----ecccchHHHHHHHHHHcCCEEEEec
Q 003490 60 EDLIQKAKDGGLDVIETYVFWNVHEP---SPGN-YN----FEGRYDLVRFIKTIQKAGLYAHLRI 116 (816)
Q Consensus 60 ~d~l~k~Ka~GlNtI~tyvfWn~hEp---~~G~-yd----F~g~~dl~~fi~la~~~GL~vilR~ 116 (816)
.+.+..++++|+++|...=+-....+ .+.. |+ |....+|.++|+.|+++||.||+..
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 44677789999999987533221111 1111 22 2334699999999999999999985
No 231
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=20.22 E-value=2e+02 Score=27.07 Aligned_cols=44 Identities=20% Similarity=0.368 Sum_probs=31.4
Q ss_pred CCHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEE
Q 003490 54 STPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAH 113 (816)
Q Consensus 54 ~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vi 113 (816)
.+++...+.++.+++.|+..|=.. +| ..-.+.+++|+++||.++
T Consensus 63 ~~~~~~~~~v~~~~~~g~~~v~~~---------~g-------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 63 VPPDKVPEIVDEAAALGVKAVWLQ---------PG-------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp S-HHHHHHHHHHHHHHT-SEEEE----------TT-------S--HHHHHHHHHTT-EEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEE---------cc-------hHHHHHHHHHHHcCCEEE
Confidence 478999999999999998776541 22 255888999999999865
No 232
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=20.19 E-value=2e+02 Score=31.56 Aligned_cols=80 Identities=18% Similarity=0.120 Sum_probs=51.4
Q ss_pred CEEeEEEE-EE-e-eCCCCCHhhHHHHHHHHHHCCCCEEEeceeccc------cCCC-CceeeecccchHHHHHHHHHHc
Q 003490 39 GQRRILFS-GS-I-HYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNV------HEPS-PGNYNFEGRYDLVRFIKTIQKA 108 (816)
Q Consensus 39 G~~~~l~s-G~-~-Hy~R~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~------hEp~-~G~ydF~g~~dl~~fi~la~~~ 108 (816)
+++++.+. |+ . .+-|+|.|.|.+.++++.+.|+..|=+.-+=.. .+.. +...|..|..+|..+..+.+..
T Consensus 173 ~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~~~~~~~l~g~~sL~el~ali~~a 252 (334)
T TIGR02195 173 ERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALLPGELRNLAGETSLDEAVDLIALA 252 (334)
T ss_pred CCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhCCcccccCCCCCCHHHHHHHHHhC
Confidence 45666553 33 3 466689999999999998888766544332110 0001 1235677777788888888877
Q ss_pred CCEEEEecCc
Q 003490 109 GLYAHLRIGP 118 (816)
Q Consensus 109 GL~vilR~GP 118 (816)
.|+|-...||
T Consensus 253 ~l~I~~DSGp 262 (334)
T TIGR02195 253 KAVVTNDSGL 262 (334)
T ss_pred CEEEeeCCHH
Confidence 7777766665
No 233
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=20.15 E-value=1.5e+02 Score=31.95 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=31.2
Q ss_pred EECCEEeEEEEEEeeCCCC-CHhhHHHHHHHHHHCCCCEE
Q 003490 36 LINGQRRILFSGSIHYPRS-TPDMWEDLIQKAKDGGLDVI 74 (816)
Q Consensus 36 ~idG~~~~l~sG~~Hy~R~-~~~~W~d~l~k~Ka~GlNtI 74 (816)
.+.|++...++|..|+... ...+-+--++.||++|+..|
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~i 86 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETL 86 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEE
Confidence 4689999999999997554 44444778899999999665
No 234
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=20.11 E-value=1.5e+02 Score=31.55 Aligned_cols=60 Identities=15% Similarity=-0.041 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEEEec
Q 003490 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (816)
Q Consensus 57 ~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vilR~ 116 (816)
+..++.++.++++|..+|.+...+.--...+.+..-.-...|.++.++|+++|+.+.+.|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 457888999999999999764333211111112111112456777888999999999987
No 235
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=20.05 E-value=68 Score=35.68 Aligned_cols=115 Identities=19% Similarity=0.258 Sum_probs=64.8
Q ss_pred eEEEEEEeeCCCCCHhhHHHHHHHHHHCCCCEEEeceeccccCCCCceeeecccchHHHHHHHHHHcCCEEE-EecCcee
Q 003490 42 RILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAH-LRIGPYV 120 (816)
Q Consensus 42 ~~l~sG~~Hy~R~~~~~W~d~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~g~~dl~~fi~la~~~GL~vi-lR~GPYi 120 (816)
.++++-+..--+. |+.|++.+..+-+.|+|.|.- +|+.- .|...|.++|+++|..++ +|.-|.-
T Consensus 35 ~liiGiA~~GG~l-p~~w~~~i~~Ai~~Gl~IvsG-----LH~~L---------~ddpel~~~A~~~g~~i~DvR~p~~~ 99 (301)
T PF07755_consen 35 TLIIGIAPAGGRL-PPSWRPVILEAIEAGLDIVSG-----LHDFL---------SDDPELAAAAKKNGVRIIDVRKPPKD 99 (301)
T ss_dssp EEEE---STTHCC-HCCHHHHHHHHHHTT-EEEE------SSS-H---------CCHHHHHCCHHCCT--EEETTS--SS
T ss_pred EEEEecCcCCCcC-CHHHHHHHHHHHHcCCCEEec-----Chhhh---------ccCHHHHHHHHHcCCeEeeccCCCcc
Confidence 3444444333333 578999999999999999997 67632 267899999999999876 6631210
Q ss_pred eeecCCCCCCccccccCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEecccccccccccccCcccHHHH
Q 003490 121 CAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLGAAGHNYM 200 (816)
Q Consensus 121 caEw~~GGlP~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QiENEyg~~~~~~~~~~~~Y~ 200 (816)
+ .+++. + -..-.+++|++ .|.- ...+|.+.
T Consensus 100 ------------~--------------------~~~~g-----~----~~~~~~~rv~~-----vGTD----cavGK~tT 129 (301)
T PF07755_consen 100 ------------L--------------------PVASG-----R----IREVKAKRVLT-----VGTD----CAVGKMTT 129 (301)
T ss_dssp -------------------------------------S-----G----GGG-SSEEEEE-----EESS----SSSSHHHH
T ss_pred ------------c--------------------ccccC-----c----cccCCCCEEEE-----EccC----ccccHHHH
Confidence 0 00000 0 00224677775 2432 24678887
Q ss_pred H-HHHHHHHHcCCCcceeecCC
Q 003490 201 T-WAAKMAVEMGTGVPWVMCKE 221 (816)
Q Consensus 201 ~-~l~~~~~~~g~~vp~~~~~~ 221 (816)
. .|.+.+++.|+..-++-..|
T Consensus 130 al~L~~~l~~~G~~a~fvaTGQ 151 (301)
T PF07755_consen 130 ALELRRALRERGINAGFVATGQ 151 (301)
T ss_dssp HHHHHHHHHHTT--EEEEE-SH
T ss_pred HHHHHHHHHHcCCCceEEecCC
Confidence 5 58888899999886665444
No 236
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=20.03 E-value=3.7e+02 Score=24.87 Aligned_cols=46 Identities=22% Similarity=0.193 Sum_probs=30.6
Q ss_pred eEEEEEECC---EEEEEEEccc--ccce-eEEEeeeeccCCCcEEEEEEecC
Q 003490 502 HALHIFING---QLSGSAFGTR--EARR-FMYTGKVNLRAGRNKIALLSVAV 547 (816)
Q Consensus 502 d~~~vfVNg---~~vG~~~~~~--~~~~-~~~~~~i~l~~G~n~L~ILven~ 547 (816)
-.+.++||+ +.+++..-.. +-.. -+.+.+|.|.+|.|+|.|-...-
T Consensus 60 ~~~~l~id~~~g~~~~~~~~~~tg~w~~~~~~~~~v~l~~G~h~i~l~~~~~ 111 (125)
T PF03422_consen 60 GTIELRIDGPDGTLIGTVSLPPTGGWDTWQTVSVSVKLPAGKHTIYLVFNGG 111 (125)
T ss_dssp EEEEEEETTTTSEEEEEEEEE-ESSTTEEEEEEEEEEEESEEEEEEEEESSS
T ss_pred cEEEEEECCCCCcEEEEEEEcCCCCccccEEEEEEEeeCCCeeEEEEEEECC
Confidence 478999999 8888875311 1111 23456778888999998865443
Done!