BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003491
(816 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 369 bits (947), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/349 (54%), Positives = 243/349 (69%), Gaps = 31/349 (8%)
Query: 205 KIRVVVRKRPLNKKELSRKEEDIVTV-SDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDE 263
+I V VRKRPLNK+EL++KE D+++V S L VHEPKLKVDLT Y+E FCFD DE
Sbjct: 72 RICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDE 131
Query: 264 RVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM------------QPLPLRA 311
+N+ VYR T P++ TIF+ KATCFAYGQTGSGKT TM + + A
Sbjct: 132 TASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMA 191
Query: 312 AEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGERKKLCMREDGRQQVCIVGLQEF 371
+ D+ L +QP YRN ++++++FEIY GK+FDLL ++ KL + ED RQQV +VGLQE+
Sbjct: 192 SRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSRQQVQVVGLQEY 251
Query: 372 EVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNES 431
V+ V + I G+A R++G T AN SSRSHA Q+ ++ +
Sbjct: 252 LVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLR-----------------T 294
Query: 432 RGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFR 491
+G++ GK S +DLAG+ERGADT+ DRQTR+EGAEINKSLLALKECIRAL ++ H PFR
Sbjct: 295 KGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFR 354
Query: 492 GSKLTEVLRDSFVG-NSKTVMISCISPNVGSCEHTLNTLRYADRVKSLS 539
SKLT+VLRDSF+G NS+T MI+ ISP + SCE+TLNTLRYADRVK LS
Sbjct: 355 ESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELS 403
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 369 bits (947), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/348 (54%), Positives = 242/348 (69%), Gaps = 31/348 (8%)
Query: 206 IRVVVRKRPLNKKELSRKEEDIVTV-SDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDER 264
I V VRKRPLNK+EL++KE D+++V S L VHEPKLKVDLT Y+E FCFD DE
Sbjct: 1 ICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDET 60
Query: 265 VTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM------------QPLPLRAA 312
+N+ VYR T P++ TIF+ KATCFAYGQTGSGKT TM + + A+
Sbjct: 61 ASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMAS 120
Query: 313 EDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGERKKLCMREDGRQQVCIVGLQEFE 372
D+ L +QP YRN ++++++FEIY GK+FDLL ++ KL + ED RQQV +VGLQE+
Sbjct: 121 RDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSRQQVQVVGLQEYL 180
Query: 373 VSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNESR 432
V+ V + I G+A R++G T AN SSRSHA Q+ ++ ++
Sbjct: 181 VTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLR-----------------TK 223
Query: 433 GKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRG 492
G++ GK S +DLAG+ERGADT+ DRQTR+EGAEINKSLLALKECIRAL ++ H PFR
Sbjct: 224 GRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRE 283
Query: 493 SKLTEVLRDSFVG-NSKTVMISCISPNVGSCEHTLNTLRYADRVKSLS 539
SKLT+VLRDSF+G NS+T MI+ ISP + SCE+TLNTLRYADRVK LS
Sbjct: 284 SKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELS 331
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 367 bits (941), Expect = e-101, Method: Compositional matrix adjust.
Identities = 188/349 (53%), Positives = 243/349 (69%), Gaps = 31/349 (8%)
Query: 205 KIRVVVRKRPLNKKELSRKEEDIVTV-SDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDE 263
+I V VRKRPLNK+EL++KE D++++ S L VHEPKLKVDLT Y+E FCFD DE
Sbjct: 52 RICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDE 111
Query: 264 RVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM------------QPLPLRA 311
+N+ VYR T P++ TIF+ KATCFAYGQTGSGKT TM + + A
Sbjct: 112 TASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMA 171
Query: 312 AEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGERKKLCMREDGRQQVCIVGLQEF 371
+ D+ L +QP YR ++++++FEIY GKLFDLL ++ KL + EDG+QQV +VGLQE
Sbjct: 172 SRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKKAKLRVLEDGKQQVQVVGLQEH 231
Query: 372 EVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNES 431
V+ V + I+ G+A R++G T AN SSRSHA Q+ ++ +
Sbjct: 232 LVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILR-----------------A 274
Query: 432 RGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFR 491
+G++ GK S +DLAG+ERGADT+ DRQTR+EGAEINKSLLALKECIRAL ++ H PFR
Sbjct: 275 KGRMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFR 334
Query: 492 GSKLTEVLRDSFVG-NSKTVMISCISPNVGSCEHTLNTLRYADRVKSLS 539
SKLT+VLRDSF+G NS+T MI+ ISP + SCE+TLNTLRYADRVK LS
Sbjct: 335 ESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELS 383
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 354 bits (909), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 184/348 (52%), Positives = 238/348 (68%), Gaps = 31/348 (8%)
Query: 205 KIRVVVRKRPLNKKELSRKEEDIVTV-SDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDE 263
+I V VRKRPLNKKE K+ D++T+ S + + VHEPK KVDLT Y+E F FD D+
Sbjct: 90 RICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTRYLENQTFRFDYAFDD 149
Query: 264 RVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM------------QPLPLRA 311
N+ VYR T P++ TIF+R ATCFAYGQTGSGKT TM + + A
Sbjct: 150 SAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKNQDCSKGIYALA 209
Query: 312 AEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGERKKLCMREDGRQQVCIVGLQEF 371
A D+ +L +P Y+ +++ ++FEIY GK+FDLL + KL + EDG+QQV +VGLQE
Sbjct: 210 ARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLNRKTKLRVLEDGKQQVQVVGLQER 269
Query: 372 EVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNES 431
EV V+ V + I+ GN+ R++G T AN SSRSHA+ Q+ +++
Sbjct: 270 EVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRR----------------- 312
Query: 432 RGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFR 491
+GK+ GK S IDLAG+ERGADT+ DRQTR+EGAEINKSLLALKECIRAL ++ H PFR
Sbjct: 313 KGKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKPHTPFR 372
Query: 492 GSKLTEVLRDSFVG-NSKTVMISCISPNVGSCEHTLNTLRYADRVKSL 538
SKLT+VLRDSF+G NS+T MI+ ISP + SCE+TLNTLRYA+RVK L
Sbjct: 373 ASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKEL 420
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 295 bits (755), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 166/355 (46%), Positives = 235/355 (66%), Gaps = 36/355 (10%)
Query: 206 IRVVVRKRPLNKKELSRKEEDIVTVSDNA-LTVHEPKLKVDLTAYVEKHEFCFDAVLDER 264
I+VVVRKRPL++ E +K+ DI+TV +N L + EP+ KVD+T Y+E+HEF D V D+
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDT 61
Query: 265 VTNDEVYRVTVEPIIPTIFQR-TKATCFAYGQTGSGKTFTM---QP--------LPLRAA 312
V N VY T++P+I +++ +CFAYGQTGSGKT+TM QP + AA
Sbjct: 62 VDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAA 121
Query: 313 EDLVRLLHQPVYRNQRFK-LWLSYFEIYGGKLFDLLGERKKLCMREDGRQQVCIVGLQEF 371
D+ L+ +Y K +++S++EIY GKL+DLL +RK + E+G+++V + L+
Sbjct: 122 GDIFTFLN--IYDKDNTKGIFISFYEIYCGKLYDLLQKRKMVAALENGKKEVVVKDLKIL 179
Query: 372 EV-SDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNE 430
V + +++ + I+ G R G N+ESSRSHAIL + +K D N+
Sbjct: 180 RVLTKEELILKMID-GVLLRKIGVNSQNDESSRSHAILNIDLK-------------DINK 225
Query: 431 SRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPF 490
+ +GKI+FIDLAGSERGADT ++QT+ +GA IN+SLLALKECIRA+D+D+ HIPF
Sbjct: 226 NTS--LGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPF 283
Query: 491 RGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSLSKSGNTK 545
R S+LT+VLRD FVG SK++MI+ ISP + CE TLNTLRY+ RVK+ GN+K
Sbjct: 284 RDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKN---KGNSK 335
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 188 bits (477), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 128/351 (36%), Positives = 184/351 (52%), Gaps = 35/351 (9%)
Query: 204 AKIRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDE 263
A +RV +R RPL KEL + + V EP L +T ++H F F VL E
Sbjct: 11 APVRVALRVRPLLPKELLHGHQSCLQV--------EPGLG-RVTLGRDRH-FGFHVVLAE 60
Query: 264 RVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM------------QPLPLRA 311
+ VY+ V+P++ F+ AT FAYGQTGSGKT+TM Q + RA
Sbjct: 61 DAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRA 120
Query: 312 AEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLL---GERKKLCMREDGRQQVCIVGL 368
+ +L+ + + + +SY E+Y + DLL + + +RED R V + G+
Sbjct: 121 MAEAFKLIDENDLLD--CLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGV 178
Query: 369 QEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDG 428
+E +V + V +E GNAAR TG+T N SSRSH + + +++ R G
Sbjct: 179 KEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPG 238
Query: 429 NESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQ--- 485
++ K F+DLAGSER T + + E +IN SLLAL I AL + Q
Sbjct: 239 Q----LLVSKFHFVDLAGSERVLKTGSTGERLK-ESIQINSSLLALGNVISALGDPQRRG 293
Query: 486 IHIPFRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVK 536
HIP+R SK+T +L+DS GN+KTVMI+C+SP+ + TLNTL YA R +
Sbjct: 294 SHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 187 bits (475), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 129/351 (36%), Positives = 185/351 (52%), Gaps = 35/351 (9%)
Query: 204 AKIRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDE 263
A +RV +R RPL KEL + + V EP L +T ++H F F VL E
Sbjct: 11 APVRVALRVRPLLPKELLHGHQSCLQV--------EPGLG-RVTLGRDRH-FGFHVVLAE 60
Query: 264 RVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM------------QPLPLRA 311
+ VY+ V+P++ F+ AT FAYGQTGSGKT+TM Q + RA
Sbjct: 61 DAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRA 120
Query: 312 AEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLL---GERKKLCMREDGRQQVCIVGL 368
+ +L+ + + + +SY E+Y + DLL + + +RED R V + G+
Sbjct: 121 MAEAFKLIDENDLLD--CLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGV 178
Query: 369 QEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDG 428
+E +V + V +E GNAAR TG+T N SSRSH + + +K+ R G
Sbjct: 179 KEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRLPRPAPG 238
Query: 429 NESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQ--- 485
++ K F+DLAGSER T + + R E +IN SLLAL I AL + Q
Sbjct: 239 Q----LLVSKFHFVDLAGSER-VLKTGSTGELRKESIQINSSLLALGNVISALGDPQRRG 293
Query: 486 IHIPFRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVK 536
+IP+R SK+T +L+DS GN+KTVMI+C+SP+ + TLNTL YA R +
Sbjct: 294 SNIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 187 bits (474), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 131/347 (37%), Positives = 186/347 (53%), Gaps = 30/347 (8%)
Query: 206 IRVVVRKRPLNKKELSRKEEDIVTVSD--NALTVHEPKLKVDLTAYVEKHEFCFDAVLDE 263
+RVVVR RP+N KE + + +V V ++V PK TA+ F FDAV D
Sbjct: 23 VRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKG----TAHEMPKTFTFDAVYDW 78
Query: 264 RVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPL--------PLRAAEDL 315
E+Y T P++ ++ Q T FAYGQTG+GKT+TM+ + + + D
Sbjct: 79 NAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDH 138
Query: 316 VRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLG--ERKKLCMREDGRQQVCIVGLQEFEV 373
+ H +NQ++ + SY EIY ++ DLL + K+L ++E V + L F
Sbjct: 139 I-FTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKRLELKERPDTGVYVKDLSSFVT 197
Query: 374 SDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDG-NESR 432
V+ ++ + GN RS G+T NE SSRSHAI + I E DG N R
Sbjct: 198 KSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITI-------ECSEVGLDGENHIR 250
Query: 433 GKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRAL-DNDQIHIPFR 491
+GK++ +DLAGSER A T + + E +IN SL AL I AL D HIP+R
Sbjct: 251 ---VGKLNLVDLAGSERQAKTGAQGERLK-EATKINLSLSALGNVISALVDGKSTHIPYR 306
Query: 492 GSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSL 538
SKLT +L+DS GN+KTVM++ + P + E TL TLRYA+R K++
Sbjct: 307 DSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNI 353
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 184 bits (466), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 123/346 (35%), Positives = 189/346 (54%), Gaps = 29/346 (8%)
Query: 206 IRVVVRKRPLNKKELSRKEEDIVTVSD-NALTVHEPKLKVDLTAYVEK--HEFCFDAVLD 262
I+V+VR RPLN +E +I+ + + +A + +P + +K F FDAV D
Sbjct: 6 IKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYD 65
Query: 263 ERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM-----QPLPLRAAEDLVR 317
+ N +++ + +P+I + + +T FAYGQTG+GKT+TM +P A + +
Sbjct: 66 QTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEP---GAIPNSFK 122
Query: 318 LLHQPV---YRNQRFKLWLSYFEIYGGKLFDLLGERKKLCMREDGRQQVCIVGLQEFEVS 374
L + NQ F + SY E+Y ++ DL+ KL ++ED + + + GL V+
Sbjct: 123 HLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNNTKLPLKEDKTRGIYVDGLSMHRVT 182
Query: 375 DVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIK--KHIEVKESFRRNNDGNESR 432
+ ++KG A R +T N+ SSRSH+I + I+ + IE KE R
Sbjct: 183 TAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIR--------- 233
Query: 433 GKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRG 492
+GK++ +DLAGSER + T +T +EGA+IN SL AL I L HIP+R
Sbjct: 234 ---VGKLNLVDLAGSERQSKTGATG-ETLVEGAKINLSLSALGLVISKLVEGATHIPYRD 289
Query: 493 SKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSL 538
SKLT +L+DS GNSKT+M + ISP + + T++TLRYADR K +
Sbjct: 290 SKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQI 335
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 127/367 (34%), Positives = 189/367 (51%), Gaps = 53/367 (14%)
Query: 204 AKIRVVVRKRPLNKKELSRKEEDIVTVSDNALTVH-------------EPKLKVDLTAYV 250
+K++V VR RP+N++E + +V V N + ++ +PK V
Sbjct: 1 SKVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPK--------V 52
Query: 251 EKHEFCF----DAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM-- 304
++ CF ++V ++ D V++ E I+ F A FAYGQTGSGK++TM
Sbjct: 53 FAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMG 112
Query: 305 ---QP-LPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLL---GERKKLCMRE 357
QP L R L + Q FK+ +SY EIY K+ DLL G R+ L +RE
Sbjct: 113 TADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVRE 172
Query: 358 DGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHI- 416
+ GL + V+ + ++ + +GN +R+ +T NEESSRSHA+ ++ + +
Sbjct: 173 HSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLY 232
Query: 417 EVKESFRRNNDGNESRGKVIGKISFIDLAGSERGADT-TDNDRQTRIEGAEINKSLLALK 475
+VK + G+ +GK+S +DLAGSER T DR EG+ INKSL L
Sbjct: 233 DVKSG---------TSGEKVGKLSLVDLAGSERATKTGAAGDRLK--EGSNINKSLTTLG 281
Query: 476 ECIRAL------DNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTL 529
I AL N +P+R S LT +L+DS GNSKT M++ +SP + + TL+TL
Sbjct: 282 LVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTL 341
Query: 530 RYADRVK 536
RYADR K
Sbjct: 342 RYADRAK 348
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 175 bits (444), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 131/370 (35%), Positives = 192/370 (51%), Gaps = 52/370 (14%)
Query: 206 IRVVVRKRPLNKKELSRKEEDIVT--VSDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDE 263
++VV R RPL++KE + E I+T V +T+ P+ + K F FDAV D
Sbjct: 23 LKVVARCRPLSRKEEAAGHEQILTMDVKLGQVTLRNPRAA---PGELPK-TFTFDAVYDA 78
Query: 264 RVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPL----PLR-----AAED 314
++Y TV P+I ++ Q T FAYGQTG+GKT+TMQ LR A E
Sbjct: 79 SSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEPELRGVIPNAFEH 138
Query: 315 LVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGER--KKLCMREDGRQQVCIVGLQEFE 372
+ H +NQ++ + SY EIY ++ DLL + K+L ++E+ V I L F
Sbjct: 139 I--FTHISRSQNQQYLVRASYLEIYQEEIRDLLSKEPGKRLELKENPETGVYIKDLSSFV 196
Query: 373 VSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNESR 432
+V+ ++ + GN R+ GST NE SSRSHAI + + E R +DG +
Sbjct: 197 TKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITV-------ECSERGSDGQDH- 248
Query: 433 GKVIGKISFIDLAGSER----------GADTTDNDRQTRI-------------EGAEINK 469
+GK++ +DLAGSER GA T + E ++IN
Sbjct: 249 -IRVGKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINL 307
Query: 470 SLLALKECIRAL-DNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNT 528
SL AL I AL N HIP+R SKLT +L+DS GN+KT+M++ + P S + +L+T
Sbjct: 308 SLSALGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLST 367
Query: 529 LRYADRVKSL 538
LR+A+R K++
Sbjct: 368 LRFANRAKNI 377
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 175 bits (444), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 121/355 (34%), Positives = 182/355 (51%), Gaps = 33/355 (9%)
Query: 206 IRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKL---------KVDLTAYVEKH--- 253
++VVVR RP N KE + +V V D + V +PK K ++K
Sbjct: 12 MKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKD 71
Query: 254 -EFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPLPLRAA 312
+F FDAV DE T EV+ T +PI+ + T AYG TG+GKT TM
Sbjct: 72 LKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPG 131
Query: 313 EDLVRLLH-----QPVYRNQRFKLWLSYFEIYGGKLFDLLGERKKLCMREDGRQQVCIVG 367
+ +LH + + +SY E+Y ++ DLL L +RED ++ V + G
Sbjct: 132 VMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLVNSGPLAVREDTQKGVVVHG 191
Query: 368 LQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNND 427
L + + + ++ GN R+ T N SSRSHA+ Q+ +++ ++
Sbjct: 192 LTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQ---------QDKT 242
Query: 428 GNESRGKVIGKISFIDLAGSERGADTTDNDRQTR-IEGAEINKSLLALKECIRALDNDQ- 485
+ ++ I K+S IDLAGSER + T + TR +EG IN+SLLAL I AL + +
Sbjct: 243 ASINQNVRIAKMSLIDLAGSERAS--TSGAKGTRFVEGTNINRSLLALGNVINALADSKR 300
Query: 486 --IHIPFRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSL 538
HIP+R SKLT +L+DS GN +T+MI+ +SP+ + T NTL+YA+R K +
Sbjct: 301 KNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 172 bits (437), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 123/354 (34%), Positives = 189/354 (53%), Gaps = 36/354 (10%)
Query: 197 NARENNVAKIRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVDLTAYVEKHEFC 256
N E+ KIRV R RPLN+KE S +E+ ++T D TV P K D ++ +
Sbjct: 6 NTIEDMKGKIRVYCRIRPLNEKESSEREKQMLTTVDE-FTVEHP-WKDD-----KRKQHI 58
Query: 257 FDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQP------LPLR 310
+D V D R + D+++ T + ++ + FAYGQTGSGKTFT+ L R
Sbjct: 59 YDRVFDMRASQDDIFEDT-KYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNPGLTPR 117
Query: 311 AAEDLVRLLHQPVYRNQRFKLWLSYF--EIYGGKLFDLL----GERKKLCMREDGRQQVC 364
A ++L +L + ++RF L + E+Y L DLL R KL +++D + V
Sbjct: 118 ATKELFNILKRD---SKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSKGMVF 174
Query: 365 IVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRR 424
+ + +S ++ ++ +E+G+ R T NEESSRSH IL + I+ I++
Sbjct: 175 VENVTTIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIES-IDL------ 227
Query: 425 NNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDND 484
+++ GK+SF+DLAGSER + Q + E INKSL AL + I AL +
Sbjct: 228 -----QTQSAARGKLSFVDLAGSERVKKSGSAGNQLK-EAQSINKSLSALGDVIGALSSG 281
Query: 485 QIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSL 538
HIP+R KLT ++ DS GN+KT+M +SP + + T N+L YA RV+++
Sbjct: 282 NQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTI 335
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 130/357 (36%), Positives = 179/357 (50%), Gaps = 40/357 (11%)
Query: 206 IRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDERV 265
I+VVVR RP N E RK V + + L + + FD V
Sbjct: 19 IQVVVRVRPFNLAE--RKASAHSIVESDPVRKEVSVRTGGLADKSSRKTYTFDMVFGAST 76
Query: 266 TNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQ--------------PLPLRA 311
+VYR V PI+ + AT FAYGQTG+GKTFTM+ PL
Sbjct: 77 KQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEEDPL---- 132
Query: 312 AEDLVRLLHQPVYR----NQRFKLWLSYFEIYGGKLFDLLGER----KKLCMREDGRQQ- 362
A + R LHQ + F + +S EIY +LFDLL ++L M +D R +
Sbjct: 133 AGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKR 192
Query: 363 -VCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKES 421
V I GL+E V + V + +EKG A R+T +T N SSRSH++ + I +KE+
Sbjct: 193 GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTI----HMKET 248
Query: 422 FRRNNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRAL 481
DG E IGK++ +DLAGSE + D++ R E IN+SLL L I AL
Sbjct: 249 ---TIDGEELVK--IGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVITAL 302
Query: 482 DNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSL 538
H+P+R SKLT +L+DS G ++T +I+ ISP + E TL+TL YA R K++
Sbjct: 303 VERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 129/356 (36%), Positives = 179/356 (50%), Gaps = 38/356 (10%)
Query: 206 IRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVD-LTAYVEKHEFCFDAVLDER 264
I+VVVR RP N E IV E ++ L + + FD V
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVECDP---VRKEVSVRTGGLADKSSRKTYTFDMVFGAS 75
Query: 265 VTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQ------------PLPLRAA 312
+VYR V PI+ + T FAYGQTG+GKTFTM+ +PL A
Sbjct: 76 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEVPL--A 133
Query: 313 EDLVRLLHQPVYR----NQRFKLWLSYFEIYGGKLFDLLGER----KKLCMREDGRQQ-- 362
+ R LHQ + F + +S EIY +LFDLL ++L M +D R +
Sbjct: 134 GIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRG 193
Query: 363 VCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESF 422
V I GL+E V + V + +EKG A R+T +T N SSRSH++ + I +KE+
Sbjct: 194 VIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTI----HMKET- 248
Query: 423 RRNNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALD 482
DG E IGK++ +DLAGSE + D++ R E IN+SLL L I AL
Sbjct: 249 --TIDGEELVK--IGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVITALV 303
Query: 483 NDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSL 538
H+P+R SKLT +L+DS G ++T +I+ ISP + E TL+TL YA R K++
Sbjct: 304 ERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 166 bits (420), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 129/358 (36%), Positives = 178/358 (49%), Gaps = 42/358 (11%)
Query: 206 IRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVD-LTAYVEKHEFCFDAVLDER 264
I+VVVR RP N E IV E ++ L + + FD V
Sbjct: 21 IQVVVRCRPFNLAERKASAHSIVECDP---VRKEVSVRTGGLADKSSRKTYTFDMVFGAS 77
Query: 265 VTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQ--------------PLPLR 310
+VYR V PI+ + T FAYGQTG+GKTFTM+ PL
Sbjct: 78 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPL--- 134
Query: 311 AAEDLVRLLHQPVYR----NQRFKLWLSYFEIYGGKLFDLLGER----KKLCMREDGRQQ 362
A + R LHQ + F + +S EIY +LFDLL ++L M +D R +
Sbjct: 135 -AGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNK 193
Query: 363 --VCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKE 420
V I GL+E V + V + +EKG A R+T +T N SSRSH++ + I +KE
Sbjct: 194 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTI----HMKE 249
Query: 421 SFRRNNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRA 480
+ DG E IGK++ +DLAGSE + D++ R E IN+SLL L I A
Sbjct: 250 T---TIDGEELVK--IGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVITA 303
Query: 481 LDNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSL 538
L H+P+R SKLT +L+DS G ++T +I+ ISP + E TL+TL YA R K++
Sbjct: 304 LVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 361
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 166 bits (420), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 129/358 (36%), Positives = 178/358 (49%), Gaps = 42/358 (11%)
Query: 206 IRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVD-LTAYVEKHEFCFDAVLDER 264
I+VVVR RP N E IV E ++ L + + FD V
Sbjct: 18 IQVVVRCRPFNLAERKASAHSIVECDP---VRKEVSVRTGGLADKSSRKTYTFDMVFGAS 74
Query: 265 VTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQ--------------PLPLR 310
+VYR V PI+ + T FAYGQTG+GKTFTM+ PL
Sbjct: 75 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPL--- 131
Query: 311 AAEDLVRLLHQPVYR----NQRFKLWLSYFEIYGGKLFDLLGER----KKLCMREDGRQQ 362
A + R LHQ + F + +S EIY +LFDLL ++L M +D R +
Sbjct: 132 -AGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNK 190
Query: 363 --VCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKE 420
V I GL+E V + V + +EKG A R+T +T N SSRSH++ + I +KE
Sbjct: 191 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTI----HMKE 246
Query: 421 SFRRNNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRA 480
+ DG E IGK++ +DLAGSE + D++ R E IN+SLL L I A
Sbjct: 247 T---TIDGEELVK--IGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVITA 300
Query: 481 LDNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSL 538
L H+P+R SKLT +L+DS G ++T +I+ ISP + E TL+TL YA R K++
Sbjct: 301 LVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 358
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 166 bits (420), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 129/358 (36%), Positives = 178/358 (49%), Gaps = 42/358 (11%)
Query: 206 IRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVD-LTAYVEKHEFCFDAVLDER 264
I+VVVR RP N E IV E ++ L + + FD V
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVECDP---VRKEVSVRTGGLADKSSRKTYTFDMVFGAS 75
Query: 265 VTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQ--------------PLPLR 310
+VYR V PI+ + T FAYGQTG+GKTFTM+ PL
Sbjct: 76 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPL--- 132
Query: 311 AAEDLVRLLHQPVYR----NQRFKLWLSYFEIYGGKLFDLLGER----KKLCMREDGRQQ 362
A + R LHQ + F + +S EIY +LFDLL ++L M +D R +
Sbjct: 133 -AGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNK 191
Query: 363 --VCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKE 420
V I GL+E V + V + +EKG A R+T +T N SSRSH++ + I +KE
Sbjct: 192 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTI----HMKE 247
Query: 421 SFRRNNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRA 480
+ DG E IGK++ +DLAGSE + D++ R E IN+SLL L I A
Sbjct: 248 T---TIDGEELVK--IGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVITA 301
Query: 481 LDNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSL 538
L H+P+R SKLT +L+DS G ++T +I+ ISP + E TL+TL YA R K++
Sbjct: 302 LVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 166 bits (419), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 129/358 (36%), Positives = 178/358 (49%), Gaps = 42/358 (11%)
Query: 206 IRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVD-LTAYVEKHEFCFDAVLDER 264
I+VVVR RP N E IV E ++ L + + FD V
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVECDP---VRKEVSVRTGGLADKSSRKTYTFDMVFGAS 75
Query: 265 VTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQ--------------PLPLR 310
+VYR V PI+ + T FAYGQTG+GKTFTM+ PL
Sbjct: 76 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPL--- 132
Query: 311 AAEDLVRLLHQPVYR----NQRFKLWLSYFEIYGGKLFDLLGER----KKLCMREDGRQQ 362
A + R LHQ + F + +S EIY +LFDLL ++L M +D R +
Sbjct: 133 -AGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNK 191
Query: 363 --VCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKE 420
V I GL+E V + V + +EKG A R+T +T N SSRSH++ + I +KE
Sbjct: 192 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTI----HMKE 247
Query: 421 SFRRNNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRA 480
+ DG E IGK++ +DLAGSE + D++ R E IN+SLL L I A
Sbjct: 248 T---TIDGEELVK--IGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVITA 301
Query: 481 LDNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSL 538
L H+P+R SKLT +L+DS G ++T +I+ ISP + E TL+TL YA R K++
Sbjct: 302 LVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 165 bits (418), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 125/354 (35%), Positives = 175/354 (49%), Gaps = 34/354 (9%)
Query: 206 IRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVD-LTAYVEKHEFCFDAVLDER 264
I+VVVR RP N E IV E ++ L + + FD V
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVECDP---VRKEVSVRTGGLADKSSRKTYTFDMVFGAS 75
Query: 265 VTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQ--------------PLPLR 310
+VYR V PI+ + T FAYGQTG+GKTFTM+ PL
Sbjct: 76 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLDGI 135
Query: 311 AAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGER----KKLCMREDGRQQ--VC 364
L ++ + F + +S EIY +LFDLL ++L M +D R + V
Sbjct: 136 IPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVI 195
Query: 365 IVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRR 424
I GL+E V + V + +EKG A R+T +T N SSRSH++ + I +KE+
Sbjct: 196 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTI----HMKET--- 248
Query: 425 NNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDND 484
DG E IGK++ +DLAGSE + D++ R E IN+SLL L I AL
Sbjct: 249 TIDGEELVK--IGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVITALVER 305
Query: 485 QIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSL 538
H+P+R SKLT +L+DS G ++T +I+ ISP + E TL+TL YA R K++
Sbjct: 306 TPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 129/358 (36%), Positives = 178/358 (49%), Gaps = 42/358 (11%)
Query: 206 IRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVD-LTAYVEKHEFCFDAVLDER 264
I+VVVR RP N E IV E ++ L + + FD V
Sbjct: 4 IQVVVRCRPFNLAERKASAHSIVECDP---VRKEVSVRTGGLADKSSRKTYTFDMVFGAS 60
Query: 265 VTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQ--------------PLPLR 310
+VYR V PI+ + T FAYGQTG+GKTFTM+ PL
Sbjct: 61 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPL--- 117
Query: 311 AAEDLVRLLHQPVYR----NQRFKLWLSYFEIYGGKLFDLLGER----KKLCMREDGRQQ 362
A + R LHQ + F + +S EIY +LFDLL ++L M +D R +
Sbjct: 118 -AGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNK 176
Query: 363 --VCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKE 420
V I GL+E V + V + +EKG A R+T +T N SSRSH++ + I +KE
Sbjct: 177 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTI----HMKE 232
Query: 421 SFRRNNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRA 480
+ DG E IGK++ +DLAGSE + D++ R E IN+SLL L I A
Sbjct: 233 T---TIDGEELVK--IGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVITA 286
Query: 481 LDNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSL 538
L H+P+R SKLT +L+DS G ++T +I+ ISP + E TL+TL YA R K++
Sbjct: 287 LVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 344
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 129/358 (36%), Positives = 178/358 (49%), Gaps = 42/358 (11%)
Query: 206 IRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVD-LTAYVEKHEFCFDAVLDER 264
I+VVVR RP N E IV E ++ L + + FD V
Sbjct: 10 IQVVVRCRPFNLAERKASAHSIVECDP---VRKEVSVRTGGLADKSSRKTYTFDMVFGAS 66
Query: 265 VTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQ--------------PLPLR 310
+VYR V PI+ + T FAYGQTG+GKTFTM+ PL
Sbjct: 67 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPL--- 123
Query: 311 AAEDLVRLLHQPVYR----NQRFKLWLSYFEIYGGKLFDLLGER----KKLCMREDGRQQ 362
A + R LHQ + F + +S EIY +LFDLL ++L M +D R +
Sbjct: 124 -AGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNK 182
Query: 363 --VCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKE 420
V I GL+E V + V + +EKG A R+T +T N SSRSH++ + I +KE
Sbjct: 183 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTI----HMKE 238
Query: 421 SFRRNNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRA 480
+ DG E IGK++ +DLAGSE + D++ R E IN+SLL L I A
Sbjct: 239 T---TIDGEELVK--IGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVITA 292
Query: 481 LDNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSL 538
L H+P+R SKLT +L+DS G ++T +I+ ISP + E TL+TL YA R K++
Sbjct: 293 LVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 350
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 122/366 (33%), Positives = 185/366 (50%), Gaps = 46/366 (12%)
Query: 204 AKIRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDE 263
A ++V VR RP N +E+SR + I+ +S + T+ PK + F FD
Sbjct: 20 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKE-----TPKSFSFDYSYWS 74
Query: 264 RVTND--------EVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM--------QPL 307
+ + +VYR E ++ F+ FAYGQTG+GK++TM Q +
Sbjct: 75 HTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGI 134
Query: 308 PLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGERKK--LCMREDGRQQVCI 365
+ EDL ++ N + + +SY EIY ++ DLL + K L +RE +
Sbjct: 135 IPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYV 194
Query: 366 VGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRN 425
L + V+ +++ ++ GN AR+ +T NE SSRSHA+ + + R +
Sbjct: 195 EDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQK-------RHD 247
Query: 426 NDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRI-EGAEINKSLLALKECIRAL--- 481
+ N + KV KIS +DLAGSER AD+T + TR+ EGA INKSL L + I AL
Sbjct: 248 AETNITTEKV-SKISLVDLAGSER-ADST-GAKGTRLKEGANINKSLTTLGKVISALAEM 304
Query: 482 ---------DNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYA 532
IP+R S LT +LR++ GNS+T M++ +SP + + TL+TLRYA
Sbjct: 305 DSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYA 364
Query: 533 DRVKSL 538
DR K +
Sbjct: 365 DRAKQI 370
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 122/366 (33%), Positives = 184/366 (50%), Gaps = 46/366 (12%)
Query: 204 AKIRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDE 263
A ++V VR RP N +E+SR + I+ +S + T+ PK + F FD
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKE-----TPKSFSFDYSYWS 58
Query: 264 RVT--------NDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM--------QPL 307
+ +VYR E ++ F+ FAYGQTG+GK++TM Q +
Sbjct: 59 HTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGI 118
Query: 308 PLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGERKK--LCMREDGRQQVCI 365
+ EDL ++ N + + +SY EIY ++ DLL + K L +RE +
Sbjct: 119 IPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYV 178
Query: 366 VGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRN 425
L + V+ +++ ++ GN AR+ +T NE SSRSHA+ + + R +
Sbjct: 179 EDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQK-------RHD 231
Query: 426 NDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRI-EGAEINKSLLALKECIRAL--- 481
+ N + KV KIS +DLAGSER AD+T + TR+ EGA INKSL L + I AL
Sbjct: 232 AETNITTEKV-SKISLVDLAGSER-ADST-GAKGTRLKEGANINKSLTTLGKVISALAEM 288
Query: 482 ---------DNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYA 532
IP+R S LT +LR++ GNS+T M++ +SP + + TL+TLRYA
Sbjct: 289 DSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYA 348
Query: 533 DRVKSL 538
DR K +
Sbjct: 349 DRAKQI 354
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 122/366 (33%), Positives = 184/366 (50%), Gaps = 46/366 (12%)
Query: 204 AKIRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDE 263
A ++V VR RP N +E+SR + I+ +S + T+ PK + F FD
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKE-----TPKSFSFDYSYWS 58
Query: 264 RVT--------NDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM--------QPL 307
+ +VYR E ++ F+ FAYGQTG+GK++TM Q +
Sbjct: 59 HTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGI 118
Query: 308 PLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGERKK--LCMREDGRQQVCI 365
+ EDL ++ N + + +SY EIY ++ DLL + K L +RE +
Sbjct: 119 IPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYV 178
Query: 366 VGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRN 425
L + V+ +++ ++ GN AR+ +T NE SSRSHA+ + + R +
Sbjct: 179 EDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQK-------RHD 231
Query: 426 NDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRI-EGAEINKSLLALKECIRAL--- 481
+ N + KV KIS +DLAGSER AD+T + TR+ EGA INKSL L + I AL
Sbjct: 232 AETNITTEKV-SKISLVDLAGSER-ADST-GAKGTRLKEGANINKSLTTLGKVISALAEM 288
Query: 482 ---------DNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYA 532
IP+R S LT +LR++ GNS+T M++ +SP + + TL+TLRYA
Sbjct: 289 DSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYA 348
Query: 533 DRVKSL 538
DR K +
Sbjct: 349 DRAKQI 354
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 162 bits (409), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 117/348 (33%), Positives = 175/348 (50%), Gaps = 40/348 (11%)
Query: 206 IRVVVRKRPLNKKELSRKEEDIVTVSD-NALTVHEPKLKVDLTAYVEKHEFCFDAVLDER 264
I+VV R RP N+ E+ + IVT + TV + + F FD V D
Sbjct: 8 IKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKE---------AQGSFTFDRVFDMS 58
Query: 265 VTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQP-----------LPLRAAE 313
+++ +++P + I T FAYGQTG+GK++TM +P +
Sbjct: 59 CKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQ 118
Query: 314 DLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLG-ERKKLCMREDGRQQVCIVGLQEFE 372
+L N + + +SY EIY ++ DLL + L + E+ + V + GL E
Sbjct: 119 IFTSILSSAA--NIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGLLEIY 176
Query: 373 VSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAI-KKHIEVKESFRRNNDGNES 431
VS VQ V E + +G AR+ +T N+ESSRSH+I + I +K++E G+
Sbjct: 177 VSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVET---------GSAK 227
Query: 432 RGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRAL-DNDQIHIPF 490
G++ +DLAGSE+ T QT E +INKSL AL I AL D H+P+
Sbjct: 228 SGQLF----LVDLAGSEK-VGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPY 282
Query: 491 RGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSL 538
R SKLT +L++S GNS+T +I SP+ + TL+TLR+ R KS+
Sbjct: 283 RDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSI 330
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 161 bits (408), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 121/366 (33%), Positives = 183/366 (50%), Gaps = 46/366 (12%)
Query: 204 AKIRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDE 263
A ++V VR RP N +E+SR + I+ +S + T+ PK + F FD
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKE-----TPKSFSFDYSYWS 58
Query: 264 RVT--------NDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM--------QPL 307
+ +VYR E ++ F+ FAYGQTG+GK++TM Q +
Sbjct: 59 HTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGI 118
Query: 308 PLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGERKK--LCMREDGRQQVCI 365
+ EDL ++ N + + +SY EIY ++ DLL + K L +RE +
Sbjct: 119 IPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYV 178
Query: 366 VGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRN 425
L + V+ +++ ++ GN R+ +T NE SSRSHA+ + + R +
Sbjct: 179 EDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQK-------RHD 231
Query: 426 NDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRI-EGAEINKSLLALKECIRAL--- 481
+ N + KV KIS +DLAGSER AD+T + TR+ EGA INKSL L + I AL
Sbjct: 232 AETNITTEKV-SKISLVDLAGSER-ADST-GAKGTRLKEGANINKSLTTLGKVISALAEM 288
Query: 482 ---------DNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYA 532
IP+R S LT +LR++ GNS+T M++ +SP + + TL+TLRYA
Sbjct: 289 DSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYA 348
Query: 533 DRVKSL 538
DR K +
Sbjct: 349 DRAKQI 354
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 160 bits (406), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 121/351 (34%), Positives = 178/351 (50%), Gaps = 36/351 (10%)
Query: 200 ENNVAKIRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVDLTAYVEKHEFCFDA 259
E+ KIRV R RPL +KE+ KE + + D H K D A + +D
Sbjct: 1 EDMKGKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWK---DDKA----KQHMYDR 53
Query: 260 VLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQP------LPLRAAE 313
V D T D+V+ T + ++ + FAYGQTGSGKTFT+ L RA
Sbjct: 54 VFDGNATQDDVFEDT-KYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMS 112
Query: 314 DLVRLLHQPVYRNQRFKLWLSYF--EIYGGKLFDLL----GERKKLCMREDGRQQVCIVG 367
+L R++ + + +F L + E+Y L DLL +R KL +++D + V +
Sbjct: 113 ELFRIMKKD---SNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVEN 169
Query: 368 LQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNND 427
+ +S + +K I++G+ R T T NE+SSRSH I+ + I+ ++ R
Sbjct: 170 VTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIAR--- 226
Query: 428 GNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIH 487
GK+SF+DLAGSER + Q + E INKSL AL + I AL + H
Sbjct: 227 ---------GKLSFVDLAGSERVKKSGSAGNQLK-EAQSINKSLSALGDVISALSSGNQH 276
Query: 488 IPFRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSL 538
IP+R KLT ++ DS GN+KT+M ISP + + T N+L YA RV+S+
Sbjct: 277 IPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSI 327
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 159 bits (401), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 123/352 (34%), Positives = 176/352 (50%), Gaps = 34/352 (9%)
Query: 206 IRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDERV 265
I+V VR RPLN +E + ++V V V L LT +F FD
Sbjct: 25 IQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTK-----KFTFDRSFGPES 79
Query: 266 TNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM---QPLPLRAA-ED------- 314
+VY V V P+I + T FAYGQTG+GKT TM + L+++ ED
Sbjct: 80 KQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGII 139
Query: 315 ---LVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLG--ERKKLCMREDGRQQ--VCIVG 367
L L + + + +SY E+Y +L DLL + K+ + +D ++ V I G
Sbjct: 140 PRALSHLFDELRMMEVEYTMRISYLELYNEELCDLLSTDDTTKIRIFDDSTKKGSVIIQG 199
Query: 368 LQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNND 427
L+E V V + +EKG R T +T N +SSRSH + + + HI R N
Sbjct: 200 LEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVV--HI------RENGI 251
Query: 428 GNESRGKVIGKISFIDLAGSERGADTTDNDRQTRI-EGAEINKSLLALKECIRALDNDQI 486
E K IGK++ +DLAGSE N++ R+ E IN+SLL L I AL +
Sbjct: 252 EGEDMLK-IGKLNLVDLAGSE-NVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAP 309
Query: 487 HIPFRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSL 538
H+P+R SKLT +L++S G +KT +I+ ISP E TL+TL YA R K++
Sbjct: 310 HVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNI 361
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 152 bits (383), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 114/343 (33%), Positives = 179/343 (52%), Gaps = 30/343 (8%)
Query: 206 IRVVVRKRPLNKKELSRKEEDIVTVSDNALTVH-EPKLKVDLTAYVEKHEFCFDAVLDER 264
IRV+ R RP+ K++ E + NA+T + + L + F D V +
Sbjct: 6 IRVIARVRPVTKEDGEGPE------ATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQ 59
Query: 265 VTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQ-----PLPLRAAEDLVRLL 319
+ +V++ V+ ++ + FAYGQTG+GKT+TM+ P + A L+
Sbjct: 60 ASQQDVFQ-EVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSE 118
Query: 320 HQPVYRNQRFKLWLSYFEIYGGKLFDLLG----ERKKLCMREDGRQQVCIVGLQEFEVSD 375
Q + + + +S EIY L DLLG E+ ++ + DG Q+ + GL EF+V
Sbjct: 119 VQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYVPGLTEFQVQS 178
Query: 376 VQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNESRGKV 435
V + + E G+ R+T T NE SSRSHA+L + ++ ++ R
Sbjct: 179 VDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRG-VDCSTGLRTT---------- 227
Query: 436 IGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKL 495
GK++ +DLAGSER + + R E INKSL AL + I AL + Q H+PFR SKL
Sbjct: 228 -GKLNLVDLAGSERVGKSGAEGSRLR-EAQHINKSLSALGDVIAALRSRQGHVPFRNSKL 285
Query: 496 TEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSL 538
T +L+DS G+SKT+M+ +SP + TL +L++A+RV+S+
Sbjct: 286 TYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSV 328
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 107/344 (31%), Positives = 168/344 (48%), Gaps = 34/344 (9%)
Query: 204 AKIRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDE 263
I+V+ R RPLN+ E++R ++ I K + + T + + FD V
Sbjct: 7 CNIKVMCRFRPLNESEVNRGDKYI------------AKFQGEDTVVIASKPYAFDRVFQS 54
Query: 264 RVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQ-----PLPLRAAEDLVRL 318
+ ++VY + I+ + + T FAYGQT SGKT TM+ P + +V+
Sbjct: 55 STSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQD 114
Query: 319 LHQPVY---RNQRFKLWLSYFEIYGGKLFDLLGERK-KLCMREDGRQQVCIVGLQEFEVS 374
+ +Y N F + +SYFEIY K+ DLL K L + ED + + G E V
Sbjct: 115 IFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVC 174
Query: 375 DVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNESRGK 434
V + I++G + R T NE SSRSH+I + +K+ + ++ K
Sbjct: 175 SPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQ------------ENTQTEQK 222
Query: 435 VIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSK 494
+ GK+ +DLAGSE+ T + E INKSL AL I AL ++P+R SK
Sbjct: 223 LSGKLYLVDLAGSEK-VSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSK 281
Query: 495 LTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSL 538
+T +L+DS GN +T ++ C SP+ + T +TL + R K++
Sbjct: 282 MTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 107/344 (31%), Positives = 168/344 (48%), Gaps = 34/344 (9%)
Query: 204 AKIRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDE 263
I+V+ R RPLN+ E++R ++ I K + + T + + FD V
Sbjct: 7 CNIKVMCRFRPLNESEVNRGDKYI------------AKFQGEDTVVIASKPYAFDRVFQS 54
Query: 264 RVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQ-----PLPLRAAEDLVRL 318
+ ++VY + I+ + + T FAYGQT SGKT TM+ P + +V+
Sbjct: 55 STSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQD 114
Query: 319 LHQPVY---RNQRFKLWLSYFEIYGGKLFDLLGERK-KLCMREDGRQQVCIVGLQEFEVS 374
+ +Y N F + +SYFEIY K+ DLL K L + ED + + G E V
Sbjct: 115 IFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVC 174
Query: 375 DVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNESRGK 434
V + I++G + R T NE SSRSH+I + +K+ + ++ K
Sbjct: 175 SPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQ------------ENTQTEQK 222
Query: 435 VIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSK 494
+ GK+ +DLAGSE+ T + E INKSL AL I AL ++P+R SK
Sbjct: 223 LSGKLYLVDLAGSEK-VSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSK 281
Query: 495 LTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSL 538
+T +L+DS GN +T ++ C SP+ + T +TL + R K++
Sbjct: 282 MTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 117/348 (33%), Positives = 173/348 (49%), Gaps = 42/348 (12%)
Query: 206 IRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDERV 265
I+VV R RPLN E + +V +N V E + + Y+ FD V
Sbjct: 13 IKVVCRFRPLNDSEEKAGSKFVVKFPNN---VEENCISIAGKVYL------FDKVFKPNA 63
Query: 266 TNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM---------QPLPLRAAEDLV 316
+ ++VY + I+ + T FAYGQT SGKT TM Q + R D+
Sbjct: 64 SQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIF 123
Query: 317 RLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGERK-KLCMREDGRQQVCIVGLQEFEVSD 375
++ + N F + +SY+EIY K+ DLL K L + ED + + G E VS
Sbjct: 124 NHIY-AMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYVKGATERFVSS 182
Query: 376 VQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNESRGKV 435
+ V E IE+G + R T NE SSRSH++ + +K+ + E++ K+
Sbjct: 183 PEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQ------------ENLENQKKL 230
Query: 436 IGKISFIDLAGSER----GADTTDNDRQTRIEGAEINKSLLALKECIRAL-DNDQIHIPF 490
GK+ +DLAGSE+ GA+ T D E INKSL AL I AL D ++ HIP+
Sbjct: 231 SGKLYLVDLAGSEKVSKTGAEGTVLD-----EAKNINKSLSALGNVISALADGNKTHIPY 285
Query: 491 RGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSL 538
R SKLT +L++S GN++T ++ C SP + T +TL + R K++
Sbjct: 286 RDSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTV 333
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 149 bits (377), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 105/344 (30%), Positives = 167/344 (48%), Gaps = 34/344 (9%)
Query: 204 AKIRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDE 263
I+V+ R RPLN+ E++R ++ + K + + T + + FD V
Sbjct: 7 CNIKVMCRFRPLNESEVNRGDKYV------------AKFQGEDTVMIASKPYAFDRVFQS 54
Query: 264 RVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQ-----PLPLRAAEDLVRL 318
+ ++VY + I+ + + T FAYGQT SGK TM+ P + +V+
Sbjct: 55 STSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGMGIIPRIVQD 114
Query: 319 LHQPVY---RNQRFKLWLSYFEIYGGKLFDLLGERK-KLCMREDGRQQVCIVGLQEFEVS 374
+ +Y N F + +SYFEIY K+ DLL K L + ED + + G E V
Sbjct: 115 IFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVC 174
Query: 375 DVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNESRGK 434
V + I++G + R T NE SSRSH+I + +K+ + ++ K
Sbjct: 175 SPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQ------------ENTQTEQK 222
Query: 435 VIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSK 494
+ GK+ +DLAGSE+ T + E INKSL AL I AL ++P+R SK
Sbjct: 223 LSGKLYLVDLAGSEK-VSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSK 281
Query: 495 LTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSL 538
+T +L+DS GN +T ++ C SP+ + T +TL + R K++
Sbjct: 282 MTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 149 bits (376), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 117/350 (33%), Positives = 174/350 (49%), Gaps = 38/350 (10%)
Query: 206 IRVVVRKRPLNKKELSRKE-EDIVTVSDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDER 264
+ V VR RPLN +E S E + +DN + +VD F FD V
Sbjct: 6 VAVCVRVRPLNSREESLGETAQVYWKTDNNVI-----YQVD-----GSKSFNFDRVFHGN 55
Query: 265 VTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQ-------PLPLRAAEDLVR 317
T VY PII + Q T FAYGQT SGKT+TM +P RA D+ +
Sbjct: 56 ETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIP-RAIHDIFQ 114
Query: 318 LLHQPVYRNQRFKLWLSYFEIYGGKLFDLLG---ERKKLCMREDGRQQVCIVGLQEFEVS 374
+ + + ++ F L +SY EIY + DLL + K L +RED + V + L E V
Sbjct: 115 KIKK--FPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVY 172
Query: 375 DVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNESRGK 434
++ ++I KG +R G T N+ SSRSH I ++ ++ R + + G
Sbjct: 173 TSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILES--------REKGEPSNCEGS 224
Query: 435 V-IGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQI--HIPFR 491
V + ++ +DLAGSER A T + + EG IN+SL L + I+ L + Q+ I +R
Sbjct: 225 VKVSHLNLVDLAGSERAAQTGAAGVRLK-EGCNINRSLFILGQVIKKLSDGQVGGFINYR 283
Query: 492 GSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSLSKS 541
SKLT +L++S GN+KT +I I+P S + TL L++A K + +
Sbjct: 284 DSKLTRILQNSLGGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNT 331
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 117/377 (31%), Positives = 186/377 (49%), Gaps = 35/377 (9%)
Query: 196 SNARENNV-----AKIRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKV-DLTAY 249
S+ REN A++RV VR RP + V D+ L++ + +
Sbjct: 8 SSGRENLYFQGPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSC------SLEIANWRNH 61
Query: 250 VEKHEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM----- 304
E ++ FDA ER T ++Y +V+PI+ + + A+ AYG TG+GKT TM
Sbjct: 62 QETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPE 121
Query: 305 QP--LPLRAAEDLVRLLHQPVYRNQRFKL--WLSYFEIYGGKLFDLLGERK-KLCMREDG 359
QP +P RA DL++L + + + L +SY EIY K+ DLL L +RED
Sbjct: 122 QPGVIP-RALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIREDC 180
Query: 360 RQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVK 419
R + I GL + +S + + + R+ G+T N+ SSRSHA+L + + + E
Sbjct: 181 RGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQR-ERL 239
Query: 420 ESFRRNNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIR 479
FR+ GK+ IDLAGSE T + + + GA IN SL L + +
Sbjct: 240 APFRQRE----------GKLYLIDLAGSEDNRRTGNKGLRLKESGA-INTSLFVLGKVVD 288
Query: 480 ALDNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSLS 539
AL+ +P+R SKLT +L+DS G++ +++I+ I+P T++ L +A R K +
Sbjct: 289 ALNQGLPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVI 348
Query: 540 KSGNTKKDQGQNSLIPI 556
T + ++L P+
Sbjct: 349 NRPFTNESLQPHALGPV 365
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 140 bits (352), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 116/355 (32%), Positives = 175/355 (49%), Gaps = 42/355 (11%)
Query: 206 IRVVVRKRPLNKKELSRKEEDIVTVS---DNALTVHEPKLKVDLTAYVEKHEFCFDAVLD 262
IRV +R RP K L + ++ V+ DN+ K+ TA V HEF FD + D
Sbjct: 61 IRVYLRIRPA-LKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQV--HEFKFDKIFD 117
Query: 263 ERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM-QP----LPLRAAEDLVR 317
++ TN +V++ V ++ + FAYGQTGSGKTFTM P +P +
Sbjct: 118 QQDTNVDVFK-EVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPGDGIIP-STISHIFN 175
Query: 318 LLHQPVYRNQRFKLWLSYFEIYGGKLFDLL------GERKKLCMREDGRQ-----QVCIV 366
+++ + +K+ + EIY + DLL E + ++ + R I
Sbjct: 176 WINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTIT 235
Query: 367 GLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNN 426
+ ++ ++V+ ++K N RST ST +NE SSRSH+I + + +
Sbjct: 236 NVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHL------------SG 283
Query: 427 DGNESRGKVIGKISFIDLAGSER-GADTTDNDRQTRIEGAEINKSLLALKECIRAL---D 482
++ G ++ +DLAGSER DR E INKSL AL + I AL D
Sbjct: 284 SNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLR--ETQNINKSLSALGDVIHALGQPD 341
Query: 483 NDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKS 537
+ + HIPFR SKLT +L+ S G+SKT+M ISP+ TLN+LR+A +V S
Sbjct: 342 STKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNS 396
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 119/370 (32%), Positives = 179/370 (48%), Gaps = 33/370 (8%)
Query: 206 IRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDERV 265
IRV R RP + E +R T D + TV + + + + F FD V
Sbjct: 61 IRVFCRIRPPLESEENRMC-CTWTYHDES-TVELQSIDAQAKSKMGQQIFSFDQVFHPLS 118
Query: 266 TNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPLP--LRAAEDLVRLLHQPV 323
+ +++ + V P+I + FAYGQTGSGKT+TM +P + V LL +
Sbjct: 119 SQSDIFEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSI 177
Query: 324 --YRN--QRFKLWLSYFEIYGGKLFDLLGERKK---LCMREDGRQQVCIVGLQEFEVSDV 376
YRN +++ ++ EIY L+DLL +K + M ++ + + + + E V D
Sbjct: 178 RGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDP 237
Query: 377 QIVKEYIEKGNAARSTGSTGANEESSRSHAILQL-AIKKHIEVKESFRRNNDGNESRGKV 435
++ + R+T ST NE SSRSHA+ +L I +H E +E
Sbjct: 238 NHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEI-------------S 284
Query: 436 IGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKL 495
+G I+ +DLAGSE +T R T E IN+SL L I AL Q HIP+R SKL
Sbjct: 285 VGSINLVDLAGSESPKTST---RMT--ETKNINRSLSELTNVILALLQKQDHIPYRNSKL 339
Query: 496 TEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSLSKSGNTKKDQGQNSLIP 555
T +L S GNSKT+M +SP + ++ +LR+A V S K K+++ N+ +
Sbjct: 340 THLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNS-CKMTKAKRNRYLNNSVA 398
Query: 556 INKDTSSASS 565
N T S +S
Sbjct: 399 -NSSTQSNNS 407
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 107/321 (33%), Positives = 160/321 (49%), Gaps = 31/321 (9%)
Query: 255 FCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPLP--LRAA 312
F FD V + +++ + V P+I + FAYGQTGSGKT+TM +P +
Sbjct: 116 FSFDQVFHPLSSQSDIFEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVI 174
Query: 313 EDLVRLLHQPV--YRN--QRFKLWLSYFEIYGGKLFDLLGERKK---LCMREDGRQQVCI 365
V LL + YRN +++ ++ EIY L+DLL +K + M ++ + + +
Sbjct: 175 PRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYV 234
Query: 366 VGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQL-AIKKHIEVKESFRR 424
+ E V D ++ + R+T ST NE SSRSHA+ +L I +H E +E
Sbjct: 235 SNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEI--- 291
Query: 425 NNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDND 484
+G I+ +DLAGSE +T R T E IN+SL L I AL
Sbjct: 292 ----------SVGSINLVDLAGSESPKTST---RMT--ETKNINRSLSELTNVILALLQK 336
Query: 485 QIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSLSKSGNT 544
Q HIP+R SKLT +L S GNSKT+M +SP + ++ +LR+A V S K
Sbjct: 337 QDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNS-CKMTKA 395
Query: 545 KKDQGQNSLIPINKDTSSASS 565
K+++ N+ + N T S +S
Sbjct: 396 KRNRYLNNSVA-NSSTQSNNS 415
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 137 bits (345), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 112/342 (32%), Positives = 166/342 (48%), Gaps = 31/342 (9%)
Query: 206 IRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDERV 265
IRV R RP + E +R T D + TV + + + + F FD V
Sbjct: 55 IRVFCRIRPPLESEENRMC-CTWTYHDES-TVELQSIDAQAKSKMGQQIFSFDQVFHPLS 112
Query: 266 TNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPLP--LRAAEDLVRLLHQPV 323
+ +++ + V P+I + FAYGQTGSGKT+TM +P + V LL +
Sbjct: 113 SQSDIFEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSI 171
Query: 324 --YRN--QRFKLWLSYFEIYGGKLFDLLGERKK---LCMREDGRQQVCIVGLQEFEVSDV 376
YRN +++ ++ EIY L+DLL +K + M ++ + + + + E V D
Sbjct: 172 RGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDP 231
Query: 377 QIVKEYIEKGNAARSTGSTGANEESSRSHAILQL-AIKKHIEVKESFRRNNDGNESRGKV 435
++ + R+T ST NE SSRSHA+ +L I +H E +E
Sbjct: 232 NHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEI-------------S 278
Query: 436 IGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKL 495
+G I+ +DLAGSE +T R T E IN+SL L I AL Q HIP+R SKL
Sbjct: 279 VGSINLVDLAGSESPKTST---RMT--ETKNINRSLSELTNVILALLQKQDHIPYRNSKL 333
Query: 496 TEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKS 537
T +L S GNSKT+M +SP + ++ +LR+A V S
Sbjct: 334 THLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNS 375
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 135 bits (341), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 174/358 (48%), Gaps = 42/358 (11%)
Query: 203 VAKIRVVVRKRPLNKKELSRKEEDIVTVS---DNALTVHEPKLKVDLTAYVEKHEFCFDA 259
+ IRV R RP K L + ++ V+ DN+ K+ TA V HEF FD
Sbjct: 1 MGNIRVYCRIRPA-LKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQV--HEFKFDK 57
Query: 260 VLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM-QP----LPLRAAED 314
+ D++ TN +V++ V ++ + FAYGQTGSGKTFTM P +P
Sbjct: 58 IFDQQDTNVDVFK-EVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIP-STISH 115
Query: 315 LVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLL------GERKKLCMREDGRQ-----QV 363
+ +++ + +K+ + EIY + DLL E + ++ + R
Sbjct: 116 IFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTT 175
Query: 364 CIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFR 423
I + ++ ++V+ ++K N RST ST +NE SSRSH+I + +
Sbjct: 176 TITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHL----------- 224
Query: 424 RNNDGNESRGKVIGKISFIDLAGSER-GADTTDNDRQTRIEGAEINKSLLALKECIRAL- 481
+ ++ G ++ +DLAGSER DR E INKSL L + I AL
Sbjct: 225 -SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLR--ETQNINKSLSCLGDVIHALG 281
Query: 482 --DNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKS 537
D+ + HIPFR SKLT +L+ S G+SKT+M ISP+ TLN+LR+A +V S
Sbjct: 282 QPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNS 339
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 135 bits (341), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 109/335 (32%), Positives = 159/335 (47%), Gaps = 60/335 (17%)
Query: 250 VEKHEFCFDAVLDERVTNDE-------VYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTF 302
+E+ F FD T DE VY E + F+ FAYGQTGSGK++
Sbjct: 93 LEEKSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSY 152
Query: 303 TM-----QP-LPLRAAEDLVRLLH--QPVYRNQRFKLWLSYFEIYGGKLFDLLGE----- 349
TM QP L R EDL + + Q N + + +SYFE+Y + DLL
Sbjct: 153 TMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNK 212
Query: 350 -RKKLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAIL 408
L +RE + + L E V ++ + ++ G+ +R+ ST N+ SSRSHA+
Sbjct: 213 PPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVF 272
Query: 409 QLAIKK---HIEVKESFRRNNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGA 465
+ +K+ +E ++ R++ +I +DLAGSER T ++ R EG+
Sbjct: 273 TIMLKQIHHDLETDDTTERSS-----------RIRLVDLAGSERAKSTEATGQRLR-EGS 320
Query: 466 EINKSLLALKECIRALDNDQIH----------------------IPFRGSKLTEVLRDSF 503
INKSL L I AL + + +P+R S LT +L+DS
Sbjct: 321 NINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSL 380
Query: 504 VGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSL 538
GNSKT MI+CISP + TL+TLRYAD+ K +
Sbjct: 381 GGNSKTAMIACISPT--DYDETLSTLRYADQAKRI 413
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 135 bits (341), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 115/357 (32%), Positives = 173/357 (48%), Gaps = 42/357 (11%)
Query: 204 AKIRVVVRKRPLNKKELSRKEEDIVTVS---DNALTVHEPKLKVDLTAYVEKHEFCFDAV 260
IRV R RP K L + ++ V+ DN+ K+ TA V HEF FD +
Sbjct: 14 GNIRVYCRIRPA-LKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQV--HEFKFDKI 70
Query: 261 LDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM-QP----LPLRAAEDL 315
D++ TN +V++ V ++ + FAYGQTGSGKTFTM P +P +
Sbjct: 71 FDQQDTNVDVFK-EVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIP-STISHI 128
Query: 316 VRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLL------GERKKLCMREDGRQ-----QVC 364
+++ + +K+ + EIY + DLL E + ++ + R
Sbjct: 129 FNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTT 188
Query: 365 IVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRR 424
I + ++ ++V+ ++K N RST ST +NE SSRSH+I + +
Sbjct: 189 ITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHL------------ 236
Query: 425 NNDGNESRGKVIGKISFIDLAGSER-GADTTDNDRQTRIEGAEINKSLLALKECIRAL-- 481
+ ++ G ++ +DLAGSER DR E INKSL L + I AL
Sbjct: 237 SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLR--ETQNINKSLSCLGDVIHALGQ 294
Query: 482 -DNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKS 537
D+ + HIPFR SKLT +L+ S G+SKT+M ISP+ TLN+LR+A +V S
Sbjct: 295 PDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNS 351
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 101/302 (33%), Positives = 146/302 (48%), Gaps = 36/302 (11%)
Query: 255 FCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM----QPLPLR 310
F FD + D++ TNDE+++ V +I + FAYGQTGSGKT+TM +
Sbjct: 76 FKFDKIFDQQETNDEIFK-EVGQLIQSSLDGYNVCIFAYGQTGSGKTYTMLNPGDGIVPA 134
Query: 311 AAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLL-------------GERKKLCMRE 357
+ + + R +K+ + EIY + DLL + K +
Sbjct: 135 TINHIFSWIDKLAARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKHEIRHD 194
Query: 358 DGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIE 417
+ I + + V + +++ N RST ST ANE SSRSH+I + H+E
Sbjct: 195 QELKTTYITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFII----HLE 250
Query: 418 VKESFRRNNDGNESRG-KVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKE 476
K NE G K G ++ +DLAGSER + + R E INKSL L +
Sbjct: 251 GK---------NEGTGEKSQGILNLVDLAGSERLNSSMVVGERLR-ETQSINKSLSCLGD 300
Query: 477 CIRAL---DNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYAD 533
I AL D + HIPFR SKLT +L+ S +G+SKT+M ISP T+N+LR+A
Sbjct: 301 VIHALNSPDGQKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFAS 360
Query: 534 RV 535
+V
Sbjct: 361 KV 362
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 111/342 (32%), Positives = 166/342 (48%), Gaps = 31/342 (9%)
Query: 206 IRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDERV 265
IRV R RP + E +R T D + TV + + + + F FD V
Sbjct: 58 IRVFCRIRPPLESEENRMC-CTWTYHDES-TVELQSIDAQAKSKMGQQIFSFDQVFHPLS 115
Query: 266 TNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPLP--LRAAEDLVRLLHQPV 323
+ +++ + V P+I + FAYGQ+GSGKT+TM +P + V LL +
Sbjct: 116 SQSDIFEM-VSPLIQSALDGYNICIFAYGQSGSGKTYTMDGVPESVGVIPRTVDLLFDSI 174
Query: 324 --YRN--QRFKLWLSYFEIYGGKLFDLLGERKK---LCMREDGRQQVCIVGLQEFEVSDV 376
YRN +++ ++ EIY L+DLL +K + M ++ + + + + E V D
Sbjct: 175 RGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDP 234
Query: 377 QIVKEYIEKGNAARSTGSTGANEESSRSHAILQL-AIKKHIEVKESFRRNNDGNESRGKV 435
++ + R+T ST NE SSRSHA+ +L I +H E +E
Sbjct: 235 NHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEI-------------S 281
Query: 436 IGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKL 495
+G I+ +DLAGSE +T R T E IN+SL L I AL Q HIP+R SKL
Sbjct: 282 VGSINLVDLAGSESPKTST---RMT--ETKNINRSLSELTNVILALLQKQDHIPYRNSKL 336
Query: 496 TEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKS 537
T +L S GNSKT+M +SP + ++ +LR+A V S
Sbjct: 337 THLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNS 378
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 118/370 (31%), Positives = 178/370 (48%), Gaps = 33/370 (8%)
Query: 206 IRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDERV 265
IRV R RP + E +R T D + TV + + + + F FD V
Sbjct: 58 IRVFCRIRPPLESEENRMC-CTWTYHDES-TVELQSIDAQAKSKMGQQIFSFDQVFHPLS 115
Query: 266 TNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPLP--LRAAEDLVRLLHQPV 323
+ +++ + V P+I + FAYGQTGSGKT+TM +P + V LL +
Sbjct: 116 SQSDIFEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSI 174
Query: 324 --YRN--QRFKLWLSYFEIYGGKLFDLLGERKK---LCMREDGRQQVCIVGLQEFEVSDV 376
YRN +++ ++ EIY L+DLL +K + M ++ + + + + E V D
Sbjct: 175 RGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDP 234
Query: 377 QIVKEYIEKGNAARSTGSTGANEESSRSHAILQL-AIKKHIEVKESFRRNNDGNESRGKV 435
++ + R+T ST NE SSRSHA+ +L I +H E +E
Sbjct: 235 NHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEI-------------S 281
Query: 436 IGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKL 495
+G I+ +DLAGSE +T R T E I +SL L I AL Q HIP+R SKL
Sbjct: 282 VGSINLVDLAGSESPKTST---RMT--ETKNIKRSLSELTNVILALLQKQDHIPYRNSKL 336
Query: 496 TEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSLSKSGNTKKDQGQNSLIP 555
T +L S GNSKT+M +SP + ++ +LR+A V S K K+++ N+ +
Sbjct: 337 THLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNS-CKMTKAKRNRYLNNSVA 395
Query: 556 INKDTSSASS 565
N T S +S
Sbjct: 396 -NSSTQSNNS 404
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 114/357 (31%), Positives = 172/357 (48%), Gaps = 42/357 (11%)
Query: 204 AKIRVVVRKRPLNKKELSRKEEDIVTVS---DNALTVHEPKLKVDLTAYVEKHEFCFDAV 260
IRV R RP K L + ++ V+ DN+ K+ TA V HEF FD +
Sbjct: 3 GNIRVYCRIRPA-LKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQV--HEFKFDKI 59
Query: 261 LDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM-QP----LPLRAAEDL 315
D++ TN +V++ V ++ + FAYGQTGSGKTFTM P +P +
Sbjct: 60 FDQQDTNVDVFK-EVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIP-STISHI 117
Query: 316 VRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLL------GERKKLCMREDGRQ-----QVC 364
+++ + +K+ + EIY + DLL E + ++ + R
Sbjct: 118 FNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTT 177
Query: 365 IVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRR 424
I + ++ ++V+ ++K N RST ST +NE SSRSH+I + +
Sbjct: 178 ITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHL------------ 225
Query: 425 NNDGNESRGKVIGKISFIDLAGSER-GADTTDNDRQTRIEGAEINKSLLALKECIRAL-- 481
+ ++ G ++ +DLAGS R DR E INKSL L + I AL
Sbjct: 226 SGSNAKTGAHSYGTLNLVDLAGSARINVSQVVGDRLR--ETQNINKSLSCLGDVIHALGQ 283
Query: 482 -DNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKS 537
D+ + HIPFR SKLT +L+ S G+SKT+M ISP+ TLN+LR+A +V S
Sbjct: 284 PDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNS 340
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 132 bits (333), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 114/357 (31%), Positives = 172/357 (48%), Gaps = 42/357 (11%)
Query: 204 AKIRVVVRKRPLNKKELSRKEEDIVTVS---DNALTVHEPKLKVDLTAYVEKHEFCFDAV 260
IRV R RP K L + ++ V+ DN+ K+ TA V HEF FD +
Sbjct: 3 GNIRVYCRIRPA-LKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQV--HEFKFDKI 59
Query: 261 LDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM-QP----LPLRAAEDL 315
D++ TN +V++ V ++ + FAYGQTGSGKTFTM P +P +
Sbjct: 60 FDQQDTNVDVFK-EVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIP-STISHI 117
Query: 316 VRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLL------GERKKLCMREDGRQ-----QVC 364
+++ + +K+ + EIY + DLL E + ++ + R
Sbjct: 118 FNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTT 177
Query: 365 IVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRR 424
I + ++ ++V+ ++K N RST ST +NE SSRSH+I + +
Sbjct: 178 ITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHL------------ 225
Query: 425 NNDGNESRGKVIGKISFIDLAGSER-GADTTDNDRQTRIEGAEINKSLLALKECIRAL-- 481
+ ++ G ++ +DLAGSER DR E I KSL L + I AL
Sbjct: 226 SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLR--ETQNIKKSLSCLGDVIHALGQ 283
Query: 482 -DNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKS 537
D+ + HIPFR SKLT +L+ S G+SKT+M ISP+ TLN+LR+A +V S
Sbjct: 284 PDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNS 340
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 132 bits (333), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 114/357 (31%), Positives = 172/357 (48%), Gaps = 42/357 (11%)
Query: 204 AKIRVVVRKRPLNKKELSRKEEDIVTVS---DNALTVHEPKLKVDLTAYVEKHEFCFDAV 260
IRV R RP K L + ++ V+ DN+ K+ TA V HEF FD +
Sbjct: 3 GNIRVYCRIRPA-LKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQV--HEFKFDKI 59
Query: 261 LDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM-QP----LPLRAAEDL 315
D++ TN +V++ V ++ + FAYGQTGSGKTFTM P +P +
Sbjct: 60 FDQQDTNVDVFK-EVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIP-STISHI 117
Query: 316 VRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLL------GERKKLCMREDGRQ-----QVC 364
+++ + +K+ + EIY + DLL E + ++ + R
Sbjct: 118 FNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTT 177
Query: 365 IVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRR 424
I + ++ ++V+ ++K N RST ST +NE SS SH+I + +
Sbjct: 178 ITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHL------------ 225
Query: 425 NNDGNESRGKVIGKISFIDLAGSER-GADTTDNDRQTRIEGAEINKSLLALKECIRAL-- 481
+ ++ G ++ +DLAGSER DR E INKSL L + I AL
Sbjct: 226 SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLR--ETQNINKSLSCLGDVIHALGQ 283
Query: 482 -DNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKS 537
D+ + HIPFR SKLT +L+ S G+SKT+M ISP+ TLN+LR+A +V S
Sbjct: 284 PDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNS 340
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 132 bits (333), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 153/312 (49%), Gaps = 42/312 (13%)
Query: 250 VEKHEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPLPL 309
+ + F FD + + TN E++ + ++ + FAYGQTGSGKT+TM L
Sbjct: 50 ILSYNFQFDMIFEPSHTNKEIFE-EIRQLVQSSLDGYNVCIFAYGQTGSGKTYTM----L 104
Query: 310 RAAEDLVRLLHQPVY--------RNQRFKLWLSYFEIYGGKLFDLLGERK---------- 351
A + ++ + ++ R +++ Y EIY + DLL + K
Sbjct: 105 NAGDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILD 164
Query: 352 --KLCMREDGRQQ-VCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAIL 408
K +R D +Q I + +++ V ++K + RST +T +NE SSRSH++
Sbjct: 165 SQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVF 224
Query: 409 QLAIKKHIEVKESFRRNNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEIN 468
+ I R + G S+GK ++ +DLAGSER + + R E IN
Sbjct: 225 MVHING--------RNLHTGETSQGK----LNLVDLAGSERINSSAVTGERLR-ETQNIN 271
Query: 469 KSLLALKECIRAL---DNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHT 525
KSL L + I AL D + +IPFR SKLT +L+ S VG+SKT+M I P+ T
Sbjct: 272 KSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISET 331
Query: 526 LNTLRYADRVKS 537
LN+LR+A +V S
Sbjct: 332 LNSLRFASKVNS 343
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 101/349 (28%), Positives = 160/349 (45%), Gaps = 47/349 (13%)
Query: 203 VAKIRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVDLTAYVEKHEFCFDAVLD 262
++ +R+ VR+ P ++ L R+E +V P + V+++EF FD
Sbjct: 21 LSAVRIAVREAPY-RQFLGRREPSVVQF---------PPWSDGKSLIVDQNEFHFDHAFP 70
Query: 263 ERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPLPL------------R 310
++ DE+Y+ + P++ + + + T AYGQTG+GK+++M P R
Sbjct: 71 ATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPR 130
Query: 311 AAEDLV-RLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGERKKLCMREDGRQQVCIVGLQ 369
A D+ R+ + +++ S+ EIY K FDLLG + M R Q C L
Sbjct: 131 ALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMVA-ARCQRCTC-LP 188
Query: 370 EFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGN 429
+D+ + +E G R T N SSRSHAI+ + H++ K R N
Sbjct: 189 LHSQADLHHI---LELGTRNRRVRPTNMNSNSSRSHAIVTI----HVKSKTHHSRMN--- 238
Query: 430 ESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIP 489
+DLAGSE G T ++ R EG IN LL++ + + ++ IP
Sbjct: 239 -----------IVDLAGSE-GVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIP 286
Query: 490 FRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSL 538
+R S LT VL+ S S ++CISP+ TL+TLR+ K L
Sbjct: 287 YRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKKL 335
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 129 bits (324), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 100/348 (28%), Positives = 160/348 (45%), Gaps = 47/348 (13%)
Query: 203 VAKIRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVDLTAYVEKHEFCFDAVLD 262
++ +R+ VR+ P ++ L R+E +V P + V+++EF FD
Sbjct: 21 LSAVRIAVREAPY-RQFLGRREPSVVQF---------PPWSDGKSLIVDQNEFHFDHAFP 70
Query: 263 ERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPLPL------------R 310
++ DE+Y+ + P++ + + + T AYGQTG+GK+++M P R
Sbjct: 71 ATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPR 130
Query: 311 AAEDLV-RLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGERKKLCMREDGRQQVCIVGLQ 369
A D+ R+ + +++ S+ EIY K FDLLG + M R Q C L
Sbjct: 131 ALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMVA-ARCQRCTC-LP 188
Query: 370 EFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGN 429
+D+ + +E G R T N SSRSHAI+ + H++ K R N
Sbjct: 189 LHSQADLHHI---LELGTRNRRVRPTNMNSNSSRSHAIVTI----HVKSKTHHSRMN--- 238
Query: 430 ESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIP 489
+DLAGSE G T ++ R EG IN LL++ + + ++ IP
Sbjct: 239 -----------IVDLAGSE-GVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIP 286
Query: 490 FRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKS 537
+R S LT VL+ S S ++CISP+ TL+TLR+ K+
Sbjct: 287 YRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKA 334
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 125 bits (315), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 98/306 (32%), Positives = 142/306 (46%), Gaps = 36/306 (11%)
Query: 252 KHEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPLP--- 308
+H+F FD V DEV+ + ++ + FAYGQTGSGKTFTM+ P
Sbjct: 82 RHDFSFDRVFPPGSGQDEVFE-EIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGD 140
Query: 309 -------LRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLL--GERK------KL 353
RA L + + + + SY EIY + DLL G RK ++
Sbjct: 141 PQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQGGECEI 200
Query: 354 CMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIK 413
G +++ + + VS + V + R+ T NE SSRSH++ QL I
Sbjct: 201 RRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQIS 260
Query: 414 KHIEVKESFRRNNDGNESRGKVIGK-ISFIDLAGSER---GADTTDNDRQTRIEGAEINK 469
+ SRG G +S +DLAGSER G +R+ E IN
Sbjct: 261 GE-------------HSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINS 307
Query: 470 SLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTL 529
SL L I AL N + H+P+R SKLT +L++S G++K +M ISP + +LN+L
Sbjct: 308 SLSTLGLVIMALSNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSL 367
Query: 530 RYADRV 535
R+A +V
Sbjct: 368 RFASKV 373
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 125 bits (315), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 94/295 (31%), Positives = 145/295 (49%), Gaps = 32/295 (10%)
Query: 255 FCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQ-------PL 307
F FD + + +ND V+ + +I T FAYGQTGSGKTFTM PL
Sbjct: 432 FLFDKIFEREQSNDLVFE-ELSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHPTNGMIPL 490
Query: 308 PLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGER-----KKLCMREDGRQQ 362
L+ + + L + + + + + EIY + DLL + K +D +
Sbjct: 491 SLKKIFNDIEELKE---KGWSYTVRGKFIEIYNEAIVDLLNPKIDPNTKYEIKHDDIAGK 547
Query: 363 VCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESF 422
+ + ++ + + + N RST +T +N+ SSRSH+I + ++ +
Sbjct: 548 TTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGY------- 600
Query: 423 RRNNDGNESRGKVIGKISFIDLAGSERGADT-TDNDRQTRIEGAEINKSLLALKECIRAL 481
N+ ES G ++ IDLAGSER ++ + DR E INKSL L + I +L
Sbjct: 601 --NSLTKESS---YGTLNLIDLAGSERLNNSRAEGDRLK--ETQAINKSLSCLGDVIHSL 653
Query: 482 D-NDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRV 535
+ D H+P+R SKLT +L+ S GNSKT+M ISP T+N+LR+A +V
Sbjct: 654 NLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKV 708
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 140/300 (46%), Gaps = 34/300 (11%)
Query: 255 FCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQP-------- 306
F D VL + + D VY + ++ T YGQTG+GKT+TM
Sbjct: 74 FKLDGVLHD-ASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHR 132
Query: 307 --LPLRAAEDLVRLLHQ-PVYRNQRFKLWLSYFEIYGGKLFDLL------GERKKLCMRE 357
LP RA + + R++ + P + + +SY EIY LFDLL G
Sbjct: 133 GILP-RALQQVFRMIEERPTHA---ITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIV 188
Query: 358 DGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIE 417
+ Q V I GL S + + +G R S N+ SSRSH I + ++ H
Sbjct: 189 ENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAH-- 246
Query: 418 VKESFRRNNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKEC 477
+ +E + + KI+ +DLAGSER + ++ Q E INKSL L++
Sbjct: 247 -------SRTLSEEK-YITSKINLVDLAGSER-LGKSGSEGQVLKEATYINKSLSFLEQA 297
Query: 478 IRAL-DNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVK 536
I AL D + HIPFR KLT L+DS GN V+++ I E TL++LR+A R+K
Sbjct: 298 IIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMK 357
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 126/258 (48%), Gaps = 38/258 (14%)
Query: 204 AKIRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVDLTAYV-EKHEFCFDAVLD 262
I+V+ R RPLN+ E+ R ++ I PK K + T + + + FD VL
Sbjct: 6 CSIKVMCRFRPLNEAEILRGDKFI------------PKFKGEETVVIGQGKPYVFDRVLP 53
Query: 263 ERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQ----------PLPLRAA 312
T ++VY + I+ + + T FAYGQT SGKT TM+ +P R A
Sbjct: 54 PNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIP-RIA 112
Query: 313 EDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGERK-KLCMREDGRQQVCIVGLQEF 371
D+ ++ + N F + +SYFEIY K+ DLL K L + ED + + G E
Sbjct: 113 HDIFDHIYS-MDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPYVKGCTER 171
Query: 372 EVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNES 431
VS + V + I++G A R T NE SSRSH+I + IK+ + E+
Sbjct: 172 FVSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQ------------ENVET 219
Query: 432 RGKVIGKISFIDLAGSER 449
K+ GK+ +DLAGSE+
Sbjct: 220 EKKLSGKLYLVDLAGSEK 237
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 467 INKSLLALKECIRAL-DNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHT 525
INKSL AL I AL + + H+P+R SK+T +L+DS GN +T ++ C SP+V + T
Sbjct: 4 INKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAET 63
Query: 526 LNTLRYADRVKSL 538
+TL + R K++
Sbjct: 64 KSTLMFGQRAKTI 76
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 468 NKSLLALKECIRAL-DNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTL 526
NKSL AL I AL + + H+P+R SK+T +L+DS GN +T ++ C SP+V + T
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 527 NTLRYADRVKSL 538
+TL + R K++
Sbjct: 61 STLMFGQRAKTI 72
>pdb|2OLS|A Chain A, The Crystal Structure Of The Phosphoenolpyruvate Synthase
From Neisseria Meningitidis
Length = 794
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 131 LLDLHAMDDTELLSEHMISEPFEPSPYIPSISKGFENDF-NLTAGWQQKEQTDADASAPV 189
L+++ +D+ + H+ + + + KGFE+D L+AG Q+ ++D+ AS +
Sbjct: 145 FLNINGLDNVKEAMHHVFASLYNDRAISYRVHKGFEHDIVALSAGVQRMVRSDSGASGVM 204
Query: 190 PTNEKES 196
T + ES
Sbjct: 205 FTLDTES 211
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.130 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,016,803
Number of Sequences: 62578
Number of extensions: 956821
Number of successful extensions: 2136
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1819
Number of HSP's gapped (non-prelim): 73
length of query: 816
length of database: 14,973,337
effective HSP length: 107
effective length of query: 709
effective length of database: 8,277,491
effective search space: 5868741119
effective search space used: 5868741119
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)