Query 003492
Match_columns 816
No_of_seqs 392 out of 3416
Neff 6.7
Searched_HMMs 29240
Date Tue Mar 26 21:25:07 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/003492.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_122-125//hhsearch_pdb/003492hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s28_A Sucrose synthase 1; gly 1.0 1 1 1541.0 63.8 804 3-814 5-808 (816)
2 2r60_A Glycosyl transferase, g 1.0 1 1 377.7 38.2 435 275-775 4-459 (499)
3 3fro_A GLGA glycogen synthase; 1.0 1 1 352.8 40.0 401 278-775 2-430 (439)
4 3vue_A GBSS-I, granule-bound s 1.0 1 1 352.0 38.3 440 277-777 8-513 (536)
5 3c48_A Predicted glycosyltrans 1.0 1 1 350.5 38.2 402 276-775 18-425 (438)
6 1rzu_A Glycogen synthase 1; gl 1.0 1 1 333.5 32.7 433 279-775 1-475 (485)
7 2qzs_A Glycogen synthase; glyc 1.0 1 1 331.8 36.2 427 279-775 1-476 (485)
8 3okp_A GDP-mannose-dependent a 1.0 1 1 326.1 35.9 369 277-775 3-379 (394)
9 2jjm_A Glycosyl transferase, g 1.0 1 1 322.6 36.3 359 299-775 24-385 (394)
10 2iw1_A Lipopolysaccharide core 1.0 1 1 318.9 18.9 367 279-775 1-371 (374)
No 1
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=1.00 E-value=1 Score=1540.99 Aligned_cols=804 Identities=68% Similarity=1.153 Sum_probs=776.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCEEEEC
Q ss_conf 88788873417879988867199999999999966985323146899997330694344556889579998531134450
Q 003492 3 APKLSRIPSIRERVEDTLSVHRNELVSLLSRYVAQGKGILQPHVLIDELDNIFGDDEGRQNLRDGPFSEVIKSAQEAIVL 82 (816)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 82 (816)
+++|+|++||+|++++++++||+++++||++|+++||++||+|||+++|+++|+ .+++++.+|+||++|++||||||.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 82 (816)
T 3s28_A 5 ERMITRVHSQRERLNETLVSERNEVLALLSRVEAKGKGILQQNQIIAEFEALPE--QTRKKLEGGPFFDLLKSTQEAIVL 82 (816)
T ss_dssp ----------------------CTTHHHHHHHHHHHTCSEEEEHHHHHHTTTTT--SCGGGCCCSTHHHHHHTEEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH--HHHCCCCCCCHHHHHHHHHHEEEC
T ss_conf 431114334888899899975999999999998629972029999999999998--622033468199999852410446
Q ss_pred CCEEEEEECCCCCEEEEEEEECCCCEEEECCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 98289998588740899998418610442386777631000026655898604430555556788888899987513354
Q 003492 83 PPFVAIAVRPRPGVWEYVRVNVYELSVEQLSVSEYLHFKEELVDASFNERFVLELDFEPFNATFPRPNRSSSIGNGVQFL 162 (816)
Q Consensus 83 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (816)
|||||||||||||+|||+|||++||+||+|||+|||+|||+|||++.+++++||+||+|||++||++++|+||||||+||
T Consensus 83 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (816)
T 3s28_A 83 PPWVALAVRPRPGVWEYLRVNLHALVVEELQPAEFLHFKEELVDGVKNGNFTLELDFEPFNASIPRPTLHKYIGNGVDFL 162 (816)
T ss_dssp SSEEEEEEEEETTEEEEEEEETTSSCEEEECHHHHHHHHHHHHHSSCCCTTSCEEECGGGGTTSCCCCCGGGTTBHHHHH
T ss_pred CCEEEEEECCCCCCEEEEEEEHHHCCEEEECHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 87279998288742599998730071145369999886898538877888705776455435799889865445748888
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 46421012799888605899986332499131214545788899999999999832799999934589985202776687
Q 003492 163 NRHLSSSMFRNKDCLEPLLDFLRAHKYKGHLLMLNDRIQSISRLQSSLSKAEDHLSKLPPDTPFSQFEYVLQGMGFEKGW 242 (816)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw 242 (816)
|||||||||+|+++++|||+||++|+|+|++|||||||+|+.+||++|++|+++|+++|+||||++|+++||+|||||||
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (816)
T 3s28_A 163 NRHLSAKLFHDKESLLPLLKFLRLHSHQGKNLMLSEKIQNLNTLQHTLRKAEEYLAELKSETLYEEFEAKFEEIGLERGW 242 (816)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHCEETTEEBSBCTTCCSHHHHHHHHHHHHHHHHHSCTTCBHHHHHHHHHHTTBCBCS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 88877665489155579999999723499064105876799999999999999985499999889999999972888876
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99378999999999994249990018675348998425999855667665456899885631245388899999999999
Q 003492 243 GDTAEHVLEMMHLLLDILQAPDPSTLEKFLGRLPMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLR 322 (816)
Q Consensus 243 g~~~~r~~~~~~~l~~~~~~p~~~~le~f~~r~p~~~rI~iis~h~~~~~~~~lG~p~tGG~~vyvld~~raL~~eLa~~ 322 (816)
||||+||+|||++|+|+|++|||+++|+|++|+||+|+|+++|+||||+|.+++|+||||||++||+||||||+++|+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~~is~hg~~~~~~~lG~~dtGGq~vyV~e~~~al~~ela~~ 322 (816)
T 3s28_A 243 GDNAERVLDMIRLLLDLLEAPDPCTLETFLGRVPMVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALEIEMLQR 322 (816)
T ss_dssp CSBHHHHHHHHHHHHHHHHSCCHHHHHHHHHHSCCCCEEEEECCSSCCCSSSCTTSTTCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHH
T ss_conf 87689999999999998519996307777365885248999847766575445788888983650998998999999999
Q ss_pred HHHCCCCEEECCEEEECCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99889955552339962469988886676301214877569998068876643211244466423399999999999998
Q 003492 323 IKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITA 402 (816)
Q Consensus 323 L~~~G~~V~~~i~IiT~~~p~~~~~~~~~~~e~v~~~~~v~I~rvp~~~~~~~~~~~isr~~i~p~l~~f~~~~~~~i~~ 402 (816)
|+++||+|+|+|+|+|+.++++.++.|+++.+.+.+++|++|+|+|+++.++++++|+++..+|+|+..|+..+...+..
T Consensus 323 L~~~G~~V~~~V~v~Tr~~~~~~g~~y~~~~e~i~~~~gv~I~RvP~~~~~g~l~~~l~k~~L~~~L~~F~~~~l~~il~ 402 (816)
T 3s28_A 323 IKQQGLNIKPRILILTRLLPDAVGTTCGERLERVYDSEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSK 402 (816)
T ss_dssp HHHTTCCCCCEEEEEEECCTTCTTSSTTSSEEECTTCSSEEEEEECEEETTEEECSCCCTTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCEEEEEEECCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99779962001689968987877776577511554869759999668776654334565778899999999999999999
Q ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCEEEECC
Q ss_conf 80999619998699916999999998399499996289856699970456432100000002228899974078999339
Q 003492 403 ELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITST 482 (816)
Q Consensus 403 ~l~~kPDIIh~h~~~~~lva~lla~~lgip~v~t~H~l~~~k~~~~~~~~~~~~~~y~f~~~~~ae~~al~~aD~IIt~S 482 (816)
...++|||||+|++.+++++.++++++|+|+|+|.|+++..++..++.+|+.....|++.+++.+|..+++.||.|||+|
T Consensus 403 ~~~~~PDVIHsH~~~sglva~llar~~gvP~V~T~Hsl~~~k~~~~~~~~~~~~~~y~~~~r~~aE~~~l~~AD~VIa~S 482 (816)
T 3s28_A 403 ELNGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITST 482 (816)
T ss_dssp HCSSCCSEEEEEHHHHHHHHHHHHHHHTCCEEEECSCCHHHHSTTTTTTHHHHHHHHCHHHHHHHHHHHHHHSSEEEESC
T ss_pred HCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECC
T ss_conf 65899739996885389999999997599889998166300122233015567788889888889999998499999888
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCHHHCCCCCCCCC
Q ss_conf 98884102444533444345555410111278888994899149976888899826899886420230000169665422
Q 003492 483 YQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDE 562 (816)
Q Consensus 483 ~~~i~~~k~~~~qy~~~~~f~~p~l~~~~~gi~~~~~ki~VIpnGVD~~~f~p~~~~~~rl~~~~~~~~~~l~~~~~~~~ 562 (816)
.++++.+.+.+++|.++..+++|++|++++|++.+++|+.|||||+|.+.|.|......+....++.++..+++|.+.++
T Consensus 483 ~~~~~~l~~~~~~y~~~~~~~~p~Lyr~~~gI~~~~~ki~VIpnGVD~~~F~P~~~~~~Rl~~~~~~i~~~l~~p~~~r~ 562 (816)
T 3s28_A 483 FQEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENKE 562 (816)
T ss_dssp HHHHHCCSSSCCTTGGGSSEEETTTEEEEESCCTTCTTEEECCCCCCTTTSCCTTCTTTCCGGGHHHHHHHHHCSCCBTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCEEEECCCCCHHHCCCCCHHHHHHHHCCCCCCCCCCCHHHHHH
T ss_conf 99999999888776442013541122101224467788799889747887286310355432002320001246056777
Q ss_pred CCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 24777799996999990257778978999999982235998299999464799887535779999999999998499995
Q 003492 563 HVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQ 642 (816)
Q Consensus 563 ~~g~l~~~~k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~~~LVIVG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~ 642 (816)
.+|++.++++++|+++||+++.||++.+++|+.++.+.+++++|+|+|++++ ..+.++++.++.+++.++++++++.++
T Consensus 563 ~lg~l~~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~LvIvG~g~~-~~~~~~e~~~~~~~L~~li~~lgL~~~ 641 (816)
T 3s28_A 563 HLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRR-KESKDNEEKAEMKKMYDLIEEYKLNGQ 641 (816)
T ss_dssp EESCBSCTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEEEEECCCTT-SCCCCHHHHHHHHHHHHHHHHTTCBBB
T ss_pred HHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 7444578998399997447221799999999999785579969999968875-333433569999999999997499872
Q ss_pred EEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEECCCCHHHHH
Q ss_conf 89902556768848999999710639997789898838999999919968983866620000248809998999999999
Q 003492 643 FRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAA 722 (816)
Q Consensus 643 V~flG~~~~~v~~~el~~~la~aadifV~PS~~EgFGltvlEAMA~GlPVIAT~~gG~~EiI~dg~~G~li~p~d~e~lA 722 (816)
|.|+|++.+.++.+++++++++++|+||+||.+|+||++++|||+||+|||+|+.||+.|++.++.+|++++++|+++++
T Consensus 642 V~flG~~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G~PVIasd~GG~~EiV~dg~~Gllv~p~D~e~LA 721 (816)
T 3s28_A 642 FRWISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAA 721 (816)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTTCCEEEESSBTHHHHCCBTTTBEEECTTSHHHHH
T ss_pred EEECCCCCCCCCHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHCCCCEEEECCCCHHHHHCCCCCEEEECCCCHHHHH
T ss_conf 89816755668999999999956909998887557649999999809999996898769997069818996899999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999987400799999999999999998402268999999999999999982035782089999999899998775301
Q 003492 723 ELMADFFGKCKENPSHWKKISDGGLKRIYERIIICRYTWKIYSERLMTLAGVYGFWKYVSKLERRETRRYLEMFYILKFR 802 (816)
Q Consensus 723 e~I~~~l~~l~~dp~~~~~ls~~ar~~v~e~~~~~~ysw~~~a~rll~ly~~y~~~~~~~~~~~~~~~~y~~~~~~l~~~ 802 (816)
++|.++++++..|++.+.+|+++|++++.+ +|||+.++++++++|+.|+||+++++++|++++||+||||+|+||
T Consensus 722 ~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~-----~fSwe~~a~~ll~lY~~~g~wk~vs~~~r~~~~ryle~~~~l~~~ 796 (816)
T 3s28_A 722 DTLADFFTKCKEDPSHWDEISKGGLQRIEE-----KYTWQIYSQRLLTLTGVYGFWKHVSNLDRLEARRYLEMFYALKYR 796 (816)
T ss_dssp HHHHHHHHHHHHCTHHHHHHHHHHHHHHHH-----SCCHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-----HCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999987526999999999999999998-----689999999999999997675421354538888899999998605
Q ss_pred CCCCCCCCCCCC
Q ss_conf 333345567668
Q 003492 803 DLVKSVPLASEN 814 (816)
Q Consensus 803 ~~~~~~~~~~~~ 814 (816)
|||+++|+++|+
T Consensus 797 ~~~~~~~~~~~~ 808 (816)
T 3s28_A 797 PLAQAVPLAQDD 808 (816)
T ss_dssp HHHHHSCCCCC-
T ss_pred HHHHCCCCCCCH
T ss_conf 677508876311
No 2
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=1.00 E-value=1 Score=377.65 Aligned_cols=435 Identities=29% Similarity=0.498 Sum_probs=313.4
Q ss_pred CCCCCEEEEECCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEECCCCCCCCCCCCCC
Q ss_conf 99842599985566766545--6899885631245388899999999999998899555523399624699888866763
Q 003492 275 LPMVFNVVILSPHGYFGQAN--VLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQR 352 (816)
Q Consensus 275 ~p~~~rI~iis~h~~~~~~~--~lG~p~tGG~~vyvld~~raL~~eLa~~L~~~G~~V~~~i~IiT~~~p~~~~~~~~~~ 352 (816)
+.+.|||++++++++|...+ +.+.+..||.+.++. +|++.|+++||+|+ |+|..........+...
T Consensus 4 m~~~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~~~~~~~~~ 71 (499)
T 2r60_A 4 MTRIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVK--------EVSLALAEMGVQVD----IITRRIKDENWPEFSGE 71 (499)
T ss_dssp ---CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHH--------HHHHHHHHTTCEEE----EEEECCCBTTBGGGCCS
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEHHH--------HHHHHHHHCCCEEE----EEECCCCCCCCCCHHHH
T ss_conf 5445249999657774434423478888799433499--------99999985598489----99578872336511356
Q ss_pred CEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 01214877569998068876643211244466423399999999999998809996199986999169999999983994
Q 003492 353 LERVSGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGIT 432 (816)
Q Consensus 353 ~e~v~~~~~v~I~rvp~~~~~~~~~~~isr~~i~p~l~~f~~~~~~~i~~~l~~kPDIIh~h~~~~~lva~lla~~lgip 432 (816)
.+......++.++++|..... +..+...|.++..+...+.+.+.+. ..+||+||+|++..++.+.++++..++|
T Consensus 72 ~~~~~~~~gv~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~Divh~~~~~~~~~~~~~~~~~~~p 145 (499)
T 2r60_A 72 IDYYQETNKVRIVRIPFGGDK-----FLPKEELWPYLHEYVNKIINFYREE-GKFPQVVTTHYGDGGLAGVLLKNIKGLP 145 (499)
T ss_dssp EEECTTCSSEEEEEECCSCSS-----CCCGGGCGGGHHHHHHHHHHHHHHH-TCCCSEEEEEHHHHHHHHHHHHHHHCCC
T ss_pred HHHCCCCCCEEEEEECCCCCC-----CCCHHHHHHHHHHHHHHHHHHHHHC-CCCCCEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 775067898179982577767-----7688999998999999999999853-8998889975786207999988735996
Q ss_pred EEEEECCCCCCCCC---CCHHHHHHHHHHHHCHHHHHHHHHHHHHCCEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCEE
Q ss_conf 99996289856699---970456432100000002228899974078999339988841024445334443455554101
Q 003492 433 QCTIAHALEKTKYP---DSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYR 509 (816)
Q Consensus 433 ~v~t~H~l~~~k~~---~~~~~~~~~~~~y~f~~~~~ae~~al~~aD~IIt~S~~~i~~~k~~~~qy~~~~~f~~p~l~~ 509 (816)
++.+.|+....... ........+...+.+......+...++.+|.||++|....+...+.. .|
T Consensus 146 ~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~-~~------------- 211 (499)
T 2r60_A 146 FTFTGHSLGAQKMEKLNVNTSNFKEMDERFKFHRRIIAERLTMSYADKIIVSTSQERFGQYSHD-LY------------- 211 (499)
T ss_dssp EEEECSSCHHHHHHTTCCCSTTSHHHHHHHCHHHHHHHHHHHHHHCSEEEESSHHHHHHTTTSG-GG-------------
T ss_pred EEEECCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHH-CC-------------
T ss_conf 8998068400111344147877612455678889999999998468999988889999998641-24-------------
Q ss_pred EECC-C-CC-CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCHHHCCCCCCCCCCCC-----CCCCCCCCEEEEEECC
Q ss_conf 1127-8-88-8994899149976888899826899886420230000169665422247-----7779999699999025
Q 003492 510 VVHG-I-DV-FDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVG-----TLSDRSKPIVFSMARL 581 (816)
Q Consensus 510 ~~~g-i-~~-~~~ki~VIpnGVD~~~f~p~~~~~~rl~~~~~~~~~~l~~~~~~~~~~g-----~l~~~~k~iIl~vGRL 581 (816)
| + +. ...++.+||||+|.+.|.+......+. .+ ++.+| + ++++++|+++||+
T Consensus 212 ---g~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~-~~--------------r~~~~~~~~~~--~~~~~~i~~vGrl 271 (499)
T 2r60_A 212 ---RGAVNVEDDDKFSVIPPGVNTRVFDGEYGDKIKA-KI--------------TKYLERDLGSE--RMELPAIIASSRL 271 (499)
T ss_dssp ---TTTCCTTCGGGEEECCCCBCTTTSSSCCCHHHHH-HH--------------HHHHHHHSCGG--GTTSCEEEECSCC
T ss_pred ---CCCCCCCCCCCEEEECCCCCHHHCCCCCHHHHHH-HH--------------HHHHCCCCCCC--CCCCCEEEEEECC
T ss_conf ---6422346788769987995866568641035678-99--------------98836433456--8887689996068
Q ss_pred CCCCCHHHHHHHHHHHHCCCCC-EEEEEEECCCCCC---CCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHH
Q ss_conf 7778978999999982235998-2999994647998---87535779999999999998499995899025567688489
Q 003492 582 DHVKNMTGLVECYGKNSQLREL-VNLVVVAGYIDVN---KSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGE 657 (816)
Q Consensus 582 ~~~Kgi~~LieA~~~l~~~~~~-~~LVIVG~g~~~~---~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~e 657 (816)
.+.||++.+++|+..+.+..++ +.|+|+|+...+. ...+.++.++.++++++++++++.++|.|+| .++.++
T Consensus 272 ~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G----~v~~~~ 347 (499)
T 2r60_A 272 DQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFP----LNSQQE 347 (499)
T ss_dssp CGGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEE----CCSHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECC----CCCHHH
T ss_conf 5015889999999999873888659999878887532211113201479999999998649986099878----899899
Q ss_pred HHHHHHCCC----CEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf 999997106----3999778989883899999991996898386662000024880999899999999999999987400
Q 003492 658 LYRYIADTK----GAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCK 733 (816)
Q Consensus 658 l~~~la~aa----difV~PS~~EgFGltvlEAMA~GlPVIAT~~gG~~EiI~dg~~G~li~p~d~e~lAe~I~~~l~~l~ 733 (816)
+..+++. + |++|+||.+|+||++++|||+||+|||+|+.||..|++.++.+|++++++|+++++++|.+++
T Consensus 348 ~~~~~~~-a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll---- 422 (499)
T 2r60_A 348 LAGCYAY-LASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNGGPAEILDGGKYGVLVDPEDPEDIARGLLKAF---- 422 (499)
T ss_dssp HHHHHHH-HHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEESSBHHHHHTGGGTSSEEECTTCHHHHHHHHHHHH----
T ss_pred HHHHHHH-CCCCCCEEEECCCCCCCCCHHHHHHHCCCCEEEECCCCHHHHHCCCCEEEEECCCCHHHHHHHHHHHH----
T ss_conf 9999995-57679889978645897968999997699889816887788734786079958999999999999998----
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 799999999999999998402268999999999999999982
Q 003492 734 ENPSHWKKISDGGLKRIYERIIICRYTWKIYSERLMTLAGVY 775 (816)
Q Consensus 734 ~dp~~~~~ls~~ar~~v~e~~~~~~ysw~~~a~rll~ly~~y 775 (816)
+|++.+.++++++++++.+ +|+|+.++++++++|+..
T Consensus 423 ~~~~~~~~~~~~a~~~~~~-----~fs~~~~~~~~~~~y~~~ 459 (499)
T 2r60_A 423 ESEETWSAYQEKGKQRVEE-----RYTWQETARGYLEVIQEI 459 (499)
T ss_dssp SCHHHHHHHHHHHHHHHHH-----HSBHHHHHHHHHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHH-----HCCHHHHHHHHHHHHHHH
T ss_conf 6999999999999999987-----579999999999999998
No 3
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=1.00 E-value=1 Score=352.80 Aligned_cols=401 Identities=16% Similarity=0.176 Sum_probs=296.0
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEECCCCCCCCCC---------
Q ss_conf 42599985566766545689988563124538889999999999999889955552339962469988886---------
Q 003492 278 VFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTT--------- 348 (816)
Q Consensus 278 ~~rI~iis~h~~~~~~~~lG~p~tGG~~vyvld~~raL~~eLa~~L~~~G~~V~~~i~IiT~~~p~~~~~~--------- 348 (816)
.|||++++++.+| +..||.+.++. +|++.|+++||+|+ |+|...+......
T Consensus 2 ~MkIl~v~~~~~p--------~~~gG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~~~~~~~~~~~~~~ 61 (439)
T 3fro_A 2 HMKVLLLGFEFLP--------VKVGGLAEALT--------AISEALASLGHEVL----VFTPSHGRFQGEEIGKIRVFGE 61 (439)
T ss_dssp CCEEEEECSCCTT--------SCSSSHHHHHH--------HHHHHHHHTTCEEE----EEEECTTCSCCEEEEEEEETTE
T ss_pred CEEEEEEECCCCC--------CCCCCHHHHHH--------HHHHHHHHCCCEEE----EEECCCCCCHHHHHCCCCCCCC
T ss_conf 5289999502177--------66688999999--------99999997798599----9836778823655246301476
Q ss_pred -CCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCHH-H-------HHHHHHHHHHHHHHHH--CCCCEEEEECCCC
Q ss_conf -676301214877569998068876643211244466423-3-------9999999999999880--9996199986999
Q 003492 349 -CNQRLERVSGTEHTHILRVPFRSEKGILRQWISRFDVWP-Y-------LETFTEDVGSEITAEL--QGFPDFIIGNYSD 417 (816)
Q Consensus 349 -~~~~~e~v~~~~~v~I~rvp~~~~~~~~~~~isr~~i~p-~-------l~~f~~~~~~~i~~~l--~~kPDIIh~h~~~ 417 (816)
....... ....++.+++++. .. ..+..++. + ...|...+.+.+...+ ..+||+||+|++.
T Consensus 62 ~~~~~~~~-~~~~gv~v~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~ 132 (439)
T 3fro_A 62 EVQVKVSY-EERGNLRIYRIGG-GL-------LDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWH 132 (439)
T ss_dssp EEEEEEEE-EEETTEEEEEEES-GG-------GGCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSEEEEESGG
T ss_pred CCCEEEEE-CCCCCCEEEEECC-HH-------CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHH
T ss_conf 53102431-2578840899353-22-------052124667763002325789999999999974447998199946403
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCEEEECCHHHHHHHCCCCCCCC
Q ss_conf 16999999998399499996289856699970456432100000002228899974078999339988841024445334
Q 003492 418 GNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYE 497 (816)
Q Consensus 418 ~~lva~lla~~lgip~v~t~H~l~~~k~~~~~~~~~~~~~~y~f~~~~~ae~~al~~aD~IIt~S~~~i~~~k~~~~qy~ 497 (816)
.++.+.++++..++|.+.+.|+.................. .........+...++.+|.++++|....+. ..+.+
T Consensus 133 ~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~---~~~~~- 207 (439)
T 3fro_A 133 TVFAGALIKKYFKIPAVFTIHRLNKSKLPAFYFHEAGLSE-LAPYPDIDPEHTGGYIADIVTTVSRGYLID---EWGFF- 207 (439)
T ss_dssp GHHHHHHHHHHHCCCEEEEESCCCCCCEEHHHHHHTTCGG-GCCSSEECHHHHHHHHCSEEEESCHHHHHH---THHHH-
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHCCCCCCC-CCCCCEEEHHHHHHHHCCEEEECCHHHHHH---HHHHH-
T ss_conf 4345898865269978999653444568567747455100-356663207666554345887268989999---86056-
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCC----HHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4434555541011127888899489914997688889982----689988642023000016966542224777799996
Q 003492 498 SHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYS----EKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKP 573 (816)
Q Consensus 498 ~~~~f~~p~l~~~~~gi~~~~~ki~VIpnGVD~~~f~p~~----~~~~rl~~~~~~~~~~l~~~~~~~~~~g~l~~~~k~ 573 (816)
+....++.+||||+|.+.|.|.. ....+ .. .++.+|+ +++ +
T Consensus 208 -----------------~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~-~~--------------~~~~~~~--~~~-~ 252 (439)
T 3fro_A 208 -----------------RNFEGKITYVFNGIDCSFWNESYLTGSRDERK-KS--------------LLSKFGM--DEG-V 252 (439)
T ss_dssp -----------------GGGTTSEEECCCCCCTTTSCGGGSCSCHHHHH-HH--------------HHHHHTC--CSC-E
T ss_pred -----------------HHCCCCEEECCCCCCCHHCCCCCCCCHHHHHH-HH--------------HHHHCCC--CCC-C
T ss_conf -----------------50477345347888804308432211045669-99--------------9997399--998-4
Q ss_pred EEEEEECCC-CCCCHHHHHHHHHHHHCCC--CCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCC
Q ss_conf 999990257-7789789999999822359--9829999946479988753577999999999999849999589902556
Q 003492 574 IVFSMARLD-HVKNMTGLVECYGKNSQLR--ELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQT 650 (816)
Q Consensus 574 iIl~vGRL~-~~Kgi~~LieA~~~l~~~~--~~~~LVIVG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~ 650 (816)
+|+++||+. +.||++.+++|+..+.+.. ++++|+|+|+|+. .+.+.+++++++++ +.+.|.|
T Consensus 253 ~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~----------~~~~~l~~~~~~~~--~~~~~~g--- 317 (439)
T 3fro_A 253 TFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDP----------ELEGWARSLEEKHG--NVKVITE--- 317 (439)
T ss_dssp EEEEECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCCH----------HHHHHHHHHHHHCT--TEEEECS---
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCH----------HHHHHHHHHHHHCC--CEEEECC---
T ss_conf 79997333534366999999999998546678718999807972----------67789999875069--8999728---
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 76884899999971063999778989883899999991996898386662000024880999899999999999999987
Q 003492 651 NRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFG 730 (816)
Q Consensus 651 ~~v~~~el~~~la~aadifV~PS~~EgFGltvlEAMA~GlPVIAT~~gG~~EiI~dg~~G~li~p~d~e~lAe~I~~~l~ 730 (816)
.++.+++..+++. +|++|+||.+|+||++++|||+||+|||+|+.||..|++.++ +|++++++|+++++++|.+++
T Consensus 318 -~~~~~~~~~~~~~-adv~v~ps~~e~~~~~~~EAma~G~Pvi~s~~~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll- 393 (439)
T 3fro_A 318 -MLSREFVRELYGS-VDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITNE-TGILVKAGDPGELANAILKAL- 393 (439)
T ss_dssp -CCCHHHHHHHHTT-CSEEEECBSCCSSCHHHHHHHHTTCEEEEESSTHHHHHCCTT-TCEEECTTCHHHHHHHHHHHH-
T ss_pred -CCCHHHHHHHHHH-CCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCEEEECC-CEEEECCCCHHHHHHHHHHHH-
T ss_conf -7998899999997-799995898788618999999779976973788743168758-448968899899999999998-
Q ss_pred HHCC-CHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 4007-99999999999999998402268999999999999999982
Q 003492 731 KCKE-NPSHWKKISDGGLKRIYERIIICRYTWKIYSERLMTLAGVY 775 (816)
Q Consensus 731 ~l~~-dp~~~~~ls~~ar~~v~e~~~~~~ysw~~~a~rll~ly~~y 775 (816)
+ |++.+.++++++++.+ + +|||+.++++++++|+..
T Consensus 394 ---~~~~~~~~~~~~~~~~~~-~-----~~s~~~~~~~~~~~~~~~ 430 (439)
T 3fro_A 394 ---ELSRSDLSKFRENCKKRA-M-----SFSWEKSAERYVKAYTGS 430 (439)
T ss_dssp ---HHTTTTTHHHHHHHHHHH-H-----TSCHHHHHHHHHHHHHTC
T ss_pred ---HCCHHHHHHHHHHHHHHH-H-----HCCHHHHHHHHHHHHHHH
T ss_conf ---319999999999999987-6-----472999999999999999
No 4
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=1.00 E-value=1 Score=351.98 Aligned_cols=440 Identities=15% Similarity=0.164 Sum_probs=280.2
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEECCCCCCCCCCCCCCCEEE
Q ss_conf 84259998556676654568998856312453888999999999999988995555233996246998888667630121
Q 003492 277 MVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERV 356 (816)
Q Consensus 277 ~~~rI~iis~h~~~~~~~~lG~p~tGG~~vyvld~~raL~~eLa~~L~~~G~~V~~~i~IiT~~~p~~~~~~~~~~~e~v 356 (816)
..|||+++|...+| .-.+||...++. .|.++|+++||+|. |++..++.-....-......+
T Consensus 8 ~~MkIl~vs~E~~P-------~~K~GGLadvv~--------~L~~aL~~~G~~V~----Vi~P~Y~~~~~~~~~~~~~~~ 68 (536)
T 3vue_A 8 HHMNVVFVGAEMAP-------WSKTGGLGDVLG--------GLPPAMAANGHRVM----VISPRYDQYKDAWDTSVVAEI 68 (536)
T ss_dssp CCCEEEEECSCBTT-------TBCSSHHHHHHH--------HHHHHHHTTTCEEE----EEEECCSCCTTCEEEEEEEEE
T ss_pred CCCEEEEEEEECCC-------HHCCCCHHHHHH--------HHHHHHHHCCCEEE----EEECCCHHHHHHCCCCEEEEE
T ss_conf 97389999872431-------212676999999--------99999997699699----990485022242265168999
Q ss_pred C---CCCCEEEEEECCCCCCCCC-C--CCCCC------CCC--------H-HHHHHHHH--HHHHHHHHHH---------
Q ss_conf 4---8775699980688766432-1--12444------664--------2-33999999--9999999880---------
Q 003492 357 S---GTEHTHILRVPFRSEKGIL-R--QWISR------FDV--------W-PYLETFTE--DVGSEITAEL--------- 404 (816)
Q Consensus 357 ~---~~~~v~I~rvp~~~~~~~~-~--~~isr------~~i--------~-p~l~~f~~--~~~~~i~~~l--------- 404 (816)
. ....+++++.+...-.-++ . .+..| ..+ | ...++|+. .+.-++...+
T Consensus 69 ~~~~~~~~~~~~~~~~~gv~~y~id~~~~~~r~~~~~~~~~Y~~~~~~~~~d~~~rf~~f~~a~l~~~~~l~~~~~~~~~ 148 (536)
T 3vue_A 69 KVADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFK 148 (536)
T ss_dssp EETTEEEEEEEEECEETTEEEEEEECTTTTCC------------------CHHHHHHHHHHHHHHHHHHHCCCCCCTTCC
T ss_pred EECCCEEEEEEEEEEECCCEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 83683378999999978955999647554123346677866688756766417999999999999999973026530110
Q ss_pred --CCCCEEEEECCCCCHHHHHHHHHHC-------CCCEEEEECCCCCCCCC-CCHH--------HHHHHH-----HHHHC
Q ss_conf --9996199986999169999999983-------99499996289856699-9704--------564321-----00000
Q 003492 405 --QGFPDFIIGNYSDGNLVASLLAYKM-------GITQCTIAHALEKTKYP-DSDI--------YWKKFD-----EKYHF 461 (816)
Q Consensus 405 --~~kPDIIh~h~~~~~lva~lla~~l-------gip~v~t~H~l~~~k~~-~~~~--------~~~~~~-----~~y~f 461 (816)
.+++||+|+|.|.+++++.+++... ++|.|+|+|++...... .... .+.... ....+
T Consensus 149 ~~~~~ddIiH~hDW~t~l~~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (536)
T 3vue_A 149 GTYGEDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVE 228 (536)
T ss_dssp SCCCSCEEEEEESGGGSTHHHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTTC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCHHHCCHHHHHHCCCCCCC
T ss_conf 14799879997760489999999986402332025634542157422455553336441896564010333311464100
Q ss_pred HHHHHHHHHHHHHCCEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCCHHHH
Q ss_conf 00222889997407899933998884102444533444345555410111278888994899149976888899826899
Q 003492 462 SCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQK 541 (816)
Q Consensus 462 ~~~~~ae~~al~~aD~IIt~S~~~i~~~k~~~~qy~~~~~f~~p~l~~~~~gi~~~~~ki~VIpnGVD~~~f~p~~~~~~ 541 (816)
.......+.++..||.|+|+|+..+.......+.-. . + ..... ..++.+|+||||.+.|.|.++...
T Consensus 229 ~~~~n~~k~~i~~ad~v~tVS~~~a~ei~~~~~~g~-------~-l---~~~~~--~~~i~~I~NGiD~~~~~p~~d~~~ 295 (536)
T 3vue_A 229 GRKINWMKAGILEADRVLTVSPYYAEELISGIARGC-------E-L---DNIMR--LTGITGIVNGMDVSEWDPSKDKYI 295 (536)
T ss_dssp EEEEEHHHHHHHHCSEEEESCHHHHHHHHTTCCCCS-------S-S---CCCSC--CCSCEECCCCCCTTTSCTTTCSSS
T ss_pred CCCHHHHHHHHHHCCEEEECCHHHHHHHHCCCCCCC-------C-C---CCCCC--CCCEEEEECCCCHHHCCCCCCCCC
T ss_conf 330439999998536778768788534312634452-------2-0---01254--578189979966421488776210
Q ss_pred HHHH-HHCCCHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 8864-202300001696654222477779999699999025777897899999998223599829999946479988753
Q 003492 542 RLTA-LHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKD 620 (816)
Q Consensus 542 rl~~-~~~~~~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~~~LVIVG~g~~~~~~~d 620 (816)
.... ....++.+..++....+.+|+..+++.|+|+++||+.+.||++.|++|+.++.+ ++.+|+++|.|..
T Consensus 296 ~~~~~~~~~~~~K~~~k~~l~~~~gl~~d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~--~~~~l~l~G~G~~------ 367 (536)
T 3vue_A 296 TAKYDATTAIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQ--EDVQIVLLGTGKK------ 367 (536)
T ss_dssp SCCCCTTTHHHHHHHHHHHHHHHTTSCCCTTSCEEEEECCBSGGGCHHHHHHHHHHHTT--SSCEEEEECCBCH------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHH--HCCEEEEEECCCC------
T ss_conf 01444345556567779999986199879997589999653023784789999997685--4985999954672------
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCC
Q ss_conf 57799999999999984999958990255676884899999971063999778989883899999991996898386662
Q 003492 621 REEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGP 700 (816)
Q Consensus 621 ~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~aadifV~PS~~EgFGltvlEAMA~GlPVIAT~~gG~ 700 (816)
.....+......+ .+++.+.+ ..+..++..+++. +|+||+||++|+||++++|||+||+|||+|+.||+
T Consensus 368 ----~~~~~~~~~~~~~--~~~v~~~~----~~~~~~~~~~~~~-aD~~v~PS~~E~fgl~~lEAma~G~PvI~s~~gG~ 436 (536)
T 3vue_A 368 ----KFEKLLKSMEEKY--PGKVRAVV----KFNAPLAHLIMAG-ADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGL 436 (536)
T ss_dssp ----HHHHHHHHHHHHS--TTTEEEEC----SCCHHHHHHHHHH-CSEEEECCSCCSSCSHHHHHHHTTCCEEECSCTHH
T ss_pred ----HHHHHHHHHHHHC--CCCEEEEE----ECCHHHHHHHHHH-HHEEECCCCCCCCCHHHHHHHHCCCCEEECCCCCC
T ss_conf ----6899999987616--88549997----1468889999986-23425346568988899999986998999079982
Q ss_pred CCCCCCCCEEE----------EECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 00002488099----------98999999999999999874007999999999999999984022689999999999999
Q 003492 701 AEIIEHGASGF----------HIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERIIICRYTWKIYSERLMT 770 (816)
Q Consensus 701 ~EiI~dg~~G~----------li~p~d~e~lAe~I~~~l~~l~~dp~~~~~ls~~ar~~v~e~~~~~~ysw~~~a~rll~ 770 (816)
+|+|.||.+|+ +++|.|+++++++|.+++. +..++ .|++|.+++. .+ +|||+..|++|++
T Consensus 437 ~e~V~dg~~G~~~~~~~~~g~l~~~~d~~~la~ai~ral~-~~~~~-~~~~~~~~am---~~-----~fSW~~~A~~y~~ 506 (536)
T 3vue_A 437 VDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIK-VVGTP-AYEEMVRNCM---NQ-----DLSWKGPAKNWEN 506 (536)
T ss_dssp HHHCCBTTTEEECCCCCSCTTCCCHHHHHHHHHHHHHHHH-HTTSH-HHHHHHHHHH---HS-----CCSSHHHHHHHHH
T ss_pred HHEEECCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHH-HCCCH-HHHHHHHHHH---HH-----CCCHHHHHHHHHH
T ss_conf 2202279876324667775158799999999999999998-52959-9999999987---73-----5999999999999
Q ss_pred HHHHHHH
Q ss_conf 9998203
Q 003492 771 LAGVYGF 777 (816)
Q Consensus 771 ly~~y~~ 777 (816)
+|+..+.
T Consensus 507 ly~~L~~ 513 (536)
T 3vue_A 507 VLLGLGV 513 (536)
T ss_dssp HHHTTCC
T ss_pred HHHHHHH
T ss_conf 9998604
No 5
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=1.00 E-value=1 Score=350.45 Aligned_cols=402 Identities=21% Similarity=0.310 Sum_probs=299.5
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEECCCCCCCCCCCCCCCEE
Q ss_conf 98425999855667665456899885631245388899999999999998899555523399624699888866763012
Q 003492 276 PMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLER 355 (816)
Q Consensus 276 p~~~rI~iis~h~~~~~~~~lG~p~tGG~~vyvld~~raL~~eLa~~L~~~G~~V~~~i~IiT~~~p~~~~~~~~~~~e~ 355 (816)
..+|||++++.+.+|.. ..|.+..||.+.++. +|++.|.++||+|+ ++|....... .....
T Consensus 18 ~~mmkIl~i~~~~~p~~--~~~~~~~GG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~~-----~~~~~ 78 (438)
T 3c48_A 18 GSHMRVAMISMHTSPLQ--QPGTGDSGGMNVYIL--------STATELAKQGIEVD----IYTRATRPSQ-----GEIVR 78 (438)
T ss_dssp -CCCEEEEECTTSCTTC--C-------CHHHHHH--------HHHHHHHHTTCEEE----EEEECCCGGG-----CSEEE
T ss_pred CCHHEEEEEEEECCCCC--CCCCCCCCCHHHHHH--------HHHHHHHHCCCEEE----EEECCCCCCC-----CCCCC
T ss_conf 00203345775325634--678788787999999--------99999996699799----9954788777-----54002
Q ss_pred ECCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEE
Q ss_conf 14877569998068876643211244466423399999999999998809996199986999169999999983994999
Q 003492 356 VSGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCT 435 (816)
Q Consensus 356 v~~~~~v~I~rvp~~~~~~~~~~~isr~~i~p~l~~f~~~~~~~i~~~l~~kPDIIh~h~~~~~lva~lla~~lgip~v~ 435 (816)
. ..++.+++++.....+ .++..++.++..|...+.+...+. ..+||+||+|++..++.+.++++..++|++.
T Consensus 79 ~--~~~v~v~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Div~~~~~~~~~~~~~~~~~~~~p~v~ 150 (438)
T 3c48_A 79 V--AENLRVINIAAGPYEG-----LSKEELPTQLAAFTGGMLSFTRRE-KVTYDLIHSHYWLSGQVGWLLRDLWRIPLIH 150 (438)
T ss_dssp E--ETTEEEEEECCSCSSS-----CCGGGGGGGHHHHHHHHHHHHHHH-TCCCSEEEEEHHHHHHHHHHHHHHHTCCEEE
T ss_pred C--CCCEEEEEECCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHC-CCCCCEEEECCCCHHHHHHHHHHHCCCCEEE
T ss_conf 5--6874899924787543-----236677899999999999999841-6899989947755789999999974999899
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 96289856699970456432100000002228899974078999339988841024445334443455554101112788
Q 003492 436 IAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGID 515 (816)
Q Consensus 436 t~H~l~~~k~~~~~~~~~~~~~~y~f~~~~~ae~~al~~aD~IIt~S~~~i~~~k~~~~qy~~~~~f~~p~l~~~~~gi~ 515 (816)
+.|+............. .... ......+...++.+|.|+++|....+...+. .|++
T Consensus 151 ~~h~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-------------------~g~~ 206 (438)
T 3c48_A 151 TAHTLAAVKNSYRDDSD-TPES----EARRICEQQLVDNADVLAVNTQEEMQDLMHH-------------------YDAD 206 (438)
T ss_dssp ECSSCHHHHSCC----C-CHHH----HHHHHHHHHHHHHCSEEEESSHHHHHHHHHH-------------------HCCC
T ss_pred EECCCCCCCCCCCCCCC-CCCH----HHHHHHHHHHHHCCCEEEECCHHHHHHHHHH-------------------HCCC
T ss_conf 94277401111100267-7315----7899999999840899998479999999998-------------------5898
Q ss_pred CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 88994899149976888899826899886420230000169665422247777999969999902577789789999999
Q 003492 516 VFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYG 595 (816)
Q Consensus 516 ~~~~ki~VIpnGVD~~~f~p~~~~~~rl~~~~~~~~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~~Kgi~~LieA~~ 595 (816)
..++.+||||+|.+.|.+........ .++.+++ ++++++|+++||+.+.||++.+++|+.
T Consensus 207 --~~k~~vi~ngvd~~~~~~~~~~~~~~----------------~r~~~~~--~~~~~~i~~~G~~~~~Kg~~~li~a~~ 266 (438)
T 3c48_A 207 --PDRISVVSPGADVELYSPGNDRATER----------------SRRELGI--PLHTKVVAFVGRLQPFKGPQVLIKAVA 266 (438)
T ss_dssp --GGGEEECCCCCCTTTSCCC----CHH----------------HHHHTTC--CSSSEEEEEESCBSGGGCHHHHHHHHH
T ss_pred --HHHEEEECCCCCCCCCCCCCCCHHHH----------------HHHHCCC--CCCCCEEEEEEEECCCCCHHHHHHHHH
T ss_conf --20268826976611047866202456----------------6886089--989848999743156679899999999
Q ss_pred HHHCCCC--CEEEEEEEC----CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCEE
Q ss_conf 8223599--829999946----4799887535779999999999998499995899025567688489999997106399
Q 003492 596 KNSQLRE--LVNLVVVAG----YIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAF 669 (816)
Q Consensus 596 ~l~~~~~--~~~LVIVG~----g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~aadif 669 (816)
.+.+..| +++|+|+|+ |.. .+.++++++++++.++|.|+| .++.+++..+++. +|++
T Consensus 267 ~l~~~~p~~~~~l~i~G~~~~~g~~------------~~~l~~~~~~~~l~~~v~~~g----~~~~~~~~~~~~~-adv~ 329 (438)
T 3c48_A 267 ALFDRDPDRNLRVIICGGPSGPNAT------------PDTYRHMAEELGVEKRIRFLD----PRPPSELVAVYRA-ADIV 329 (438)
T ss_dssp HHHHHCTTCSEEEEEECCBC------------------CHHHHHHHHTTCTTTEEEEC----CCCHHHHHHHHHH-CSEE
T ss_pred HHHHHCCCCCEEEEEEECCCCCCCH------------HHHHHHHHHHCCCCCCEEECC----CCCHHHHHHHHHH-CCEE
T ss_conf 9996397766699998188877727------------899999999719878689858----8985889999985-8999
Q ss_pred EECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 97789898838999999919968983866620000248809998999999999999999874007999999999999999
Q 003492 670 VQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKR 749 (816)
Q Consensus 670 V~PS~~EgFGltvlEAMA~GlPVIAT~~gG~~EiI~dg~~G~li~p~d~e~lAe~I~~~l~~l~~dp~~~~~ls~~ar~~ 749 (816)
|.||.+|+||++++|||+||+|||+++.||..|++.++.+|++++++|+++++++|.+++ +|++.+.+|+++++++
T Consensus 330 v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~----~~~~~~~~~~~~~~~~ 405 (438)
T 3c48_A 330 AVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLL----DDDETRIRMGEDAVEH 405 (438)
T ss_dssp EECCSCCSSCHHHHHHHHTTCCEEEESCTTHHHHSCBTTTEEEESSCCHHHHHHHHHHHH----HCHHHHHHHHHHHHHH
T ss_pred EECCCCCCCCHHHHHHHHCCCCEEECCCCCHHHHHHCCCCEEECCCCCHHHHHHHHHHHH----CCHHHHHHHHHHHHHH
T ss_conf 987402687559999987699889627987257750797279879999999999999997----5989999999999999
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 98402268999999999999999982
Q 003492 750 IYERIIICRYTWKIYSERLMTLAGVY 775 (816)
Q Consensus 750 v~e~~~~~~ysw~~~a~rll~ly~~y 775 (816)
+.+ |+|+.++++++++|+..
T Consensus 406 ~~~------~s~~~~~~~~~~~~~~~ 425 (438)
T 3c48_A 406 ART------FSWAATAAQLSSLYNDA 425 (438)
T ss_dssp HHH------HHHHHHHHHHHHHHHHH
T ss_pred HHH------CCHHHHHHHHHHHHHHH
T ss_conf 885------79999999999999998
No 6
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=1.00 E-value=1 Score=333.48 Aligned_cols=433 Identities=15% Similarity=0.161 Sum_probs=277.3
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEECCCCCCCCCCCCC-------
Q ss_conf 2599985566766545689988563124538889999999999999889955552339962469988886676-------
Q 003492 279 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQ------- 351 (816)
Q Consensus 279 ~rI~iis~h~~~~~~~~lG~p~tGG~~vyvld~~raL~~eLa~~L~~~G~~V~~~i~IiT~~~p~~~~~~~~~------- 351 (816)
|||++++...+|. +..||.+.++. +|++.|+++||+|+ |+|...+.... .+..
T Consensus 1 MkIl~v~~~~~P~-------~~~GG~~~~~~--------~la~~L~~~G~~V~----vi~~~~~~~~~-~~~~~~~~~~~ 60 (485)
T 1rzu_A 1 MNVLSVSSEIYPL-------IKTGGLADVVG--------ALPIALEAHGVRTR----TLIPGYPAVKA-AVTDPVKCFEF 60 (485)
T ss_dssp CEEEEECSCBTTT-------BCSSHHHHHHH--------HHHHHHHTTTCEEE----EEEECCHHHHH-HCCSCEEEEEE
T ss_pred CEEEEEEEEECCC-------CCCCCHHHHHH--------HHHHHHHHCCCEEE----EEECCCCCCCC-CCCCCCEEEEE
T ss_conf 9699994465156-------56654999999--------99999997698699----99156443344-43565136899
Q ss_pred ------CCEEE-CCCCCEEEEEECCCCCCCCCCCCCCC--CCCHH-H---HHHHHHHHHHHHHHHH--CCCCEEEEECCC
Q ss_conf ------30121-48775699980688766432112444--66423-3---9999999999999880--999619998699
Q 003492 352 ------RLERV-SGTEHTHILRVPFRSEKGILRQWISR--FDVWP-Y---LETFTEDVGSEITAEL--QGFPDFIIGNYS 416 (816)
Q Consensus 352 ------~~e~v-~~~~~v~I~rvp~~~~~~~~~~~isr--~~i~p-~---l~~f~~~~~~~i~~~l--~~kPDIIh~h~~ 416 (816)
..... ....++.+++++......-....... ..-|+ . +..|...+ ..+.+.+ ..+||+||+|.+
T Consensus 61 ~~~~~~~~~~~~~~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~DiIh~~~~ 139 (485)
T 1rzu_A 61 TDLLGEKADLLEVQHERLDLLILDAPAYYERSGGPYLGQTGKDYPDNWKRFAALSLAA-ARIGAGVLPGWRPDMVHAHDW 139 (485)
T ss_dssp SCSSSCCEEEEEEEETTEEEEEEECHHHHCSSSCSSBCTTSSBCTTHHHHHHHHHHHH-HHHHTTCSSSCCCSEEEEEHH
T ss_pred EEECCCEEEEEEEEECCCEEEEEECHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHHHHHHCCCCCCCEEEECCC
T ss_conf 9830874789999966956999848677277766558865666530679999999999-999998615799988996463
Q ss_pred CCHHHHHHHHHH--CCCCEEEEECCCCCCCC-CCCHH-----HHHHHH-HHHHCHHHHHHHHHHHHHCCEEEECCHHHHH
Q ss_conf 916999999998--39949999628985669-99704-----564321-0000000222889997407899933998884
Q 003492 417 DGNLVASLLAYK--MGITQCTIAHALEKTKY-PDSDI-----YWKKFD-EKYHFSCQFTADLIAMNNADFIITSTYQEIA 487 (816)
Q Consensus 417 ~~~lva~lla~~--lgip~v~t~H~l~~~k~-~~~~~-----~~~~~~-~~y~f~~~~~ae~~al~~aD~IIt~S~~~i~ 487 (816)
..++.+.++++. .++|.|.+.|+...... ..... .+..+. ....+......+..+++.+|.++++|....+
T Consensus 140 ~~~~~~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~ 219 (485)
T 1rzu_A 140 QAAMTPVYMRYAETPEIPSLLTIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGLQTATALSTVSPSYAE 219 (485)
T ss_dssp HHTTHHHHHHHSSSCCCCEEEEESCTTCCCEECGGGGGGSCCCGGGSSTTTTEETTEEEHHHHHHHHCSEEEESCHHHHH
T ss_pred CHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHCCCCHHHCCCCCCCCCCCCCHHHHHHHHCCEEEECCHHHHH
T ss_conf 05578999731035899789996675446878877873439980320200013256235999888646779960875899
Q ss_pred HHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCHHHCCCCCCCCCCCCCC
Q ss_conf 10244453344434555541011127888899489914997688889982689988642023000016966542224777
Q 003492 488 GTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTL 567 (816)
Q Consensus 488 ~~k~~~~qy~~~~~f~~p~l~~~~~gi~~~~~ki~VIpnGVD~~~f~p~~~~~~rl~~~~~~~~~~l~~~~~~~~~~g~l 567 (816)
...+.. |. +.++.+ +.....++.+||||+|.+.|.|...............+....+....++.+|+
T Consensus 220 ~~~~~~--~g----~~~~~~------~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~- 286 (485)
T 1rzu_A 220 EILTAE--FG----MGLEGV------IGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRI- 286 (485)
T ss_dssp HTTSHH--HH----TTCHHH------HHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHTC-
T ss_pred HHHCCC--CC----CCHHHH------HHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-
T ss_conf 983543--57----665899------98606881697089860205886651100012432445678869999996298-
Q ss_pred CCC-CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEE-E
Q ss_conf 799-99699999025777897899999998223599829999946479988753577999999999999849999589-9
Q 003492 568 SDR-SKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFR-W 645 (816)
Q Consensus 568 ~~~-~k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~~~LVIVG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~-f 645 (816)
+. ++++|+++||+.+.||++.+++|+..+.+ ++++|+|+|+|+. .+.+.+++++++++ ++|. |
T Consensus 287 -~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g~~----------~~~~~l~~~~~~~~--~~v~~~ 351 (485)
T 1rzu_A 287 -DDDGSPLFCVISRLTWQKGIDLMAEAVDEIVS--LGGRLVVLGAGDV----------ALEGALLAAASRHH--GRVGVA 351 (485)
T ss_dssp -CCSSSCEEEEESCBSTTTTHHHHHTTHHHHHH--TTCEEEEEECBCH----------HHHHHHHHHHHHTT--TTEEEE
T ss_pred -CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH--CCCEEEEEECCCH----------HHHHHHHHHHHHCC--CCEEEE
T ss_conf -88998399997257531287999999999872--6956999968946----------89999999998678--868994
Q ss_pred ECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCC---------CEEEEECCC
Q ss_conf 02556768848999999710639997789898838999999919968983866620000248---------809998999
Q 003492 646 IAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHG---------ASGFHIDPY 716 (816)
Q Consensus 646 lG~~~~~v~~~el~~~la~aadifV~PS~~EgFGltvlEAMA~GlPVIAT~~gG~~EiI~dg---------~~G~li~p~ 716 (816)
.| . +.+++..+++. +|++|+||.+|+||++++|||+||+|||+|+.||..|++.++ .+|++++++
T Consensus 352 ~g----~-~~~~~~~~~~~-adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~ 425 (485)
T 1rzu_A 352 IG----Y-NEPLSHLMQAG-CDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFSPV 425 (485)
T ss_dssp ES----C-CHHHHHHHHHH-CSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEESSC
T ss_pred CC----C-CHHHHHHHHHC-CCEEEECCCCCCCCHHHHHHHHCCCCEEEECCCCHHHEECCCCCCCCCCCCCCCEEECCC
T ss_conf 38----9-97999999852-999997844688777999999779977980899831132156533234567763486789
Q ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999999999987400799999999999999998402268999999999999999982
Q 003492 717 HPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERIIICRYTWKIYSERLMTLAGVY 775 (816)
Q Consensus 717 d~e~lAe~I~~~l~~l~~dp~~~~~ls~~ar~~v~e~~~~~~ysw~~~a~rll~ly~~y 775 (816)
|+++++++|.+++. +..|++.+.+|++++++ + +|||+.++++++++|+..
T Consensus 426 d~~~la~~i~~ll~-~~~~~~~~~~~~~~~~~---~-----~fs~~~~~~~~~~~y~~~ 475 (485)
T 1rzu_A 426 TLDGLKQAIRRTVR-YYHDPKLWTQMQKLGMK---S-----DVSWEKSAGLYAALYSQL 475 (485)
T ss_dssp SHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHT---C-----CCBHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHH---H-----HCCHHHHHHHHHHHHHHH
T ss_conf 99999999999998-72799999999999998---8-----689699999999999986
No 7
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=1.00 E-value=1 Score=331.80 Aligned_cols=427 Identities=16% Similarity=0.165 Sum_probs=277.3
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEECCCCCCCCCC----------
Q ss_conf 2599985566766545689988563124538889999999999999889955552339962469988886----------
Q 003492 279 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTT---------- 348 (816)
Q Consensus 279 ~rI~iis~h~~~~~~~~lG~p~tGG~~vyvld~~raL~~eLa~~L~~~G~~V~~~i~IiT~~~p~~~~~~---------- 348 (816)
|||++++...+|. +..||.+.++. +|+++|+++||+|+ |+|...+......
T Consensus 1 MkIl~v~~~~~P~-------~~~GG~~~~~~--------~la~~L~~~G~~V~----vi~~~~~~~~~~~~~~~~~~~~~ 61 (485)
T 2qzs_A 1 MQVLHVCSEMFPL-------LKTGGLADVIG--------ALPAAQIADGVDAR----VLLPAFPDIRRGVTDAQVVSRRD 61 (485)
T ss_dssp CEEEEECSCBTTT-------BCSSHHHHHHH--------HHHHHHHHTTCEEE----EEEECCHHHHHHCTTCEEEEEEC
T ss_pred CEEEEEEEECCCC-------CCCCCHHHHHH--------HHHHHHHHCCCEEE----EEECCCCCCCCCCCCCEEEEEEC
T ss_conf 9699996410466-------56773999999--------99999997498789----99447643454345640578741
Q ss_pred -CCCCCEEE-CCCCCEEEEEECCCCC---CC-CCC-----CCCCCCCCHHHHHHHHHHHHHHHHHHHC--CCCEEEEECC
Q ss_conf -67630121-4877569998068876---64-321-----1244466423399999999999998809--9961999869
Q 003492 349 -CNQRLERV-SGTEHTHILRVPFRSE---KG-ILR-----QWISRFDVWPYLETFTEDVGSEITAELQ--GFPDFIIGNY 415 (816)
Q Consensus 349 -~~~~~e~v-~~~~~v~I~rvp~~~~---~~-~~~-----~~isr~~i~p~l~~f~~~~~~~i~~~l~--~kPDIIh~h~ 415 (816)
.....+.. ....++.+++++.... .+ ... .|. ..+..+..+...+ ..+.+.+. .+||+||+|.
T Consensus 62 ~~~~~~~~~~~~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~Divh~~~ 137 (485)
T 2qzs_A 62 TFAGHITLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLFAYT---DNVLRFALLGWVG-AEMASGLDPFWRPDVVHAHD 137 (485)
T ss_dssp CTTCCEEEEEEEETTEEEEEEECHHHHCCSSCSSBCTTSCBCT---THHHHHHHHHHHH-HHHTTTSSTTCCCSEEEEET
T ss_pred CCCCCEEEEEEEECCCEEEEEECHHHCCCCCCCCCCCCCCCCC---CHHHHHHHHHHHH-HHHHHHHCCCCCCCEEEEEC
T ss_conf 5687179999987894799970826506898766775457787---3589999999999-99999845678997899606
Q ss_pred CCCHHHHHHHH-HHCCCCEEEEECCCCCCCCCCCH-H-----HHHHHH-HHHHCHHHHHHHHHHHHHCCEEEECCHHHHH
Q ss_conf 99169999999-98399499996289856699970-4-----564321-0000000222889997407899933998884
Q 003492 416 SDGNLVASLLA-YKMGITQCTIAHALEKTKYPDSD-I-----YWKKFD-EKYHFSCQFTADLIAMNNADFIITSTYQEIA 487 (816)
Q Consensus 416 ~~~~lva~lla-~~lgip~v~t~H~l~~~k~~~~~-~-----~~~~~~-~~y~f~~~~~ae~~al~~aD~IIt~S~~~i~ 487 (816)
+..++.+.+++ +..++|+|.+.|+.......... . ....+. ....+......+...++.+|.++++|....+
T Consensus 138 ~~~~~~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~ 217 (485)
T 2qzs_A 138 WHAGLAPAYLAARGRPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYAR 217 (485)
T ss_dssp GGGTTHHHHHHHTTCSSEEEEEESCTTCCCEEEGGGGGTTTCCGGGCSTTTTEETTEEEHHHHHHHHCSEEEESSHHHHH
T ss_pred CCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCHHCCCCCCCCCCCCCHHHHHHHHCCEEEECCHHHHH
T ss_conf 21337899975436899789994684135788988887649991321311123246546999998753868856889999
Q ss_pred HHCCCCCCCCCCCCCCCCCCEEEECCCCC------CC--CCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCHHHCCCCCC
Q ss_conf 10244453344434555541011127888------89--94899149976888899826899886420230000169665
Q 003492 488 GTKNTVGQYESHTAFTLPGLYRVVHGIDV------FD--PKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQ 559 (816)
Q Consensus 488 ~~k~~~~qy~~~~~f~~p~l~~~~~gi~~------~~--~ki~VIpnGVD~~~f~p~~~~~~rl~~~~~~~~~~l~~~~~ 559 (816)
...+.. .|++. .. .++.+||||+|.+.|.|.........--....+........
T Consensus 218 ~~~~~~------------------~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (485)
T 2qzs_A 218 EITEPQ------------------FAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQ 279 (485)
T ss_dssp HTTSHH------------------HHTTCHHHHHHHHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGGHHHHHH
T ss_pred HHHCCC------------------CCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 985401------------------47246899985066786699746987664586444222123663006577884999
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 42224777799996999990257778978999999982235998299999464799887535779999999999998499
Q 003492 560 NDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKL 639 (816)
Q Consensus 560 ~~~~~g~l~~~~k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~~~LVIVG~g~~~~~~~d~e~~~~~~~l~~li~~~~L 639 (816)
.++.+|+..++++++|+++||+.+.||++.+++|+..+.+ ++++|+|+|+|+. .+.+.+++++++++
T Consensus 280 ~r~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g~~----------~~~~~l~~~~~~~~- 346 (485)
T 2qzs_A 280 LQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLE--QGGQLALLGAGDP----------VLQEGFLAAAAEYP- 346 (485)
T ss_dssp HHHHHTCCCCTTSCEEEEEEEESGGGCHHHHHHHHHHHHH--TTCEEEEEEEECH----------HHHHHHHHHHHHST-
T ss_pred HHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH--CCCEEEEEECCCH----------HHHHHHHHHHHHCC-
T ss_conf 9987198889997399996667543587999999999862--7948999928956----------78999999997579-
Q ss_pred CCCEE-EECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCC---------CE
Q ss_conf 99589-902556768848999999710639997789898838999999919968983866620000248---------80
Q 003492 640 DGQFR-WIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHG---------AS 709 (816)
Q Consensus 640 ~~~V~-flG~~~~~v~~~el~~~la~aadifV~PS~~EgFGltvlEAMA~GlPVIAT~~gG~~EiI~dg---------~~ 709 (816)
++|. |.| . +.+++..+++. +|++|+||.+|+||++++|||+||+|||+|+.||..|++.++ .+
T Consensus 347 -~~v~~~~g----~-~~~~~~~~~~~-adv~v~pS~~E~~g~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~ 419 (485)
T 2qzs_A 347 -GQVGVQIG----Y-HEAFSHRIMGG-ADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVAS 419 (485)
T ss_dssp -TTEEEEES----C-CHHHHHHHHHH-CSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCC
T ss_pred -CCEEEECC----C-CHHHHHHHHHH-CCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCEECCCCCCCCCCCCCC
T ss_conf -93899478----9-97999999975-88999788567876799999977997798789983255215764434446664
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 999899999999999999987400799999999999999998402268999999999999999982
Q 003492 710 GFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERIIICRYTWKIYSERLMTLAGVY 775 (816)
Q Consensus 710 G~li~p~d~e~lAe~I~~~l~~l~~dp~~~~~ls~~ar~~v~e~~~~~~ysw~~~a~rll~ly~~y 775 (816)
|++++++|+++++++|.+++. +..|++.+.+|++++++ + +|||+.++++++++|+..
T Consensus 420 G~l~~~~d~~~la~~i~~ll~-~~~~~~~~~~~~~~~~~---~-----~fs~~~~~~~~~~ly~~~ 476 (485)
T 2qzs_A 420 GFVFEDSNAWSLLRAIRRAFV-LWSRPSLWRFVQRQAMA---M-----DFSWQVAAKSYRELYYRL 476 (485)
T ss_dssp BEEECSSSHHHHHHHHHHHHH-HHTSHHHHHHHHHHHHH---C-----CCCHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHH---H-----CCCHHHHHHHHHHHHHHH
T ss_conf 599778999999999999998-70899999999999876---3-----289899999999999986
No 8
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=1.00 E-value=1 Score=326.10 Aligned_cols=369 Identities=17% Similarity=0.262 Sum_probs=280.1
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEECCCCCCCCCCCCCCCEEE
Q ss_conf 84259998556676654568998856312453888999999999999988995555233996246998888667630121
Q 003492 277 MVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERV 356 (816)
Q Consensus 277 ~~~rI~iis~h~~~~~~~~lG~p~tGG~~vyvld~~raL~~eLa~~L~~~G~~V~~~i~IiT~~~p~~~~~~~~~~~e~v 356 (816)
++|||+++++... |..||.+.++. .|++.| +||+|+ |+|...+... ....
T Consensus 3 ~~mkIl~v~~~~~---------p~~gG~~~~~~--------~l~~~L--~g~~v~----v~~~~~~~~~-------~~~~ 52 (394)
T 3okp_A 3 ASRKTLVVTNDFP---------PRIGGIQSYLR--------DFIATQ--DPESIV----VFASTQNAEE-------AHAY 52 (394)
T ss_dssp -CCCEEEEESCCT---------TSCSHHHHHHH--------HHHTTS--CGGGEE----EEEECSSHHH-------HHHH
T ss_pred CCCEEEEEECCCC---------CCCCHHHHHHH--------HHHHHH--CCCEEE----EEECCCCCCC-------HHHH
T ss_conf 8866999927668---------86551999999--------999985--697689----9977888642-------4443
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCC-EEE
Q ss_conf 4877569998068876643211244466423399999999999998809996199986999169999999983994-999
Q 003492 357 SGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGIT-QCT 435 (816)
Q Consensus 357 ~~~~~v~I~rvp~~~~~~~~~~~isr~~i~p~l~~f~~~~~~~i~~~l~~kPDIIh~h~~~~~lva~lla~~lgip-~v~ 435 (816)
....++.+.+++..... ..+ .+...+.+.+.+ .+||+||+|..........++++.++| ++.
T Consensus 53 ~~~~~~~~~~~~~~~~~----------~~~----~~~~~l~~~~~~---~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~i~ 115 (394)
T 3okp_A 53 DKTLDYEVIRWPRSVML----------PTP----TTAHAMAEIIRE---REIDNVWFGAAAPLALMAGTAKQAGASKVIA 115 (394)
T ss_dssp HTTCSSEEEEESSSSCC----------SCH----HHHHHHHHHHHH---TTCSEEEESSCTTGGGGHHHHHHTTCSEEEE
T ss_pred CCCCCEEEEECCCCCCC----------CCH----HHHHHHHHHHHH---CCCCEEEECCCCHHHHHHHHHHHCCCCCEEE
T ss_conf 34566289984565455----------551----469999999876---3898899888544889999997518981999
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 96289856699970456432100000002228899974078999339988841024445334443455554101112788
Q 003492 436 IAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGID 515 (816)
Q Consensus 436 t~H~l~~~k~~~~~~~~~~~~~~y~f~~~~~ae~~al~~aD~IIt~S~~~i~~~k~~~~qy~~~~~f~~p~l~~~~~gi~ 515 (816)
+.|+... .|... ..+. ......++.+|.++++|....+...+.. +.
T Consensus 116 ~~h~~~~--------~~~~~-~~~~-----~~~~~~~~~~d~ii~~s~~~~~~~~~~~-------------------~~- 161 (394)
T 3okp_A 116 STHGHEV--------GWSML-PGSR-----QSLRKIGTEVDVLTYISQYTLRRFKSAF-------------------GS- 161 (394)
T ss_dssp ECCSTHH--------HHTTS-HHHH-----HHHHHHHHHCSEEEESCHHHHHHHHHHH-------------------CS-
T ss_pred EECCCHH--------HHHHC-CHHH-----HHHHHHHHHCCEEEECCHHHHHHHHHHC-------------------CC-
T ss_conf 9346423--------33212-2034-----8999999867979976889999999841-------------------89-
Q ss_pred CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 88994899149976888899826899886420230000169665422247777999969999902577789789999999
Q 003492 516 VFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYG 595 (816)
Q Consensus 516 ~~~~ki~VIpnGVD~~~f~p~~~~~~rl~~~~~~~~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~~Kgi~~LieA~~ 595 (816)
..++.+||||+|.+.|.+.........+ +.+|+ ++++++|+++||+.+.||++.+++++.
T Consensus 162 --~~~~~vi~ngv~~~~~~~~~~~~~~~~~----------------~~~~~--~~~~~~i~~~G~~~~~Kg~~~li~a~~ 221 (394)
T 3okp_A 162 --HPTFEHLPSGVDVKRFTPATPEDKSATR----------------KKLGF--TDTTPVIACNSRLVPRKGQDSLIKAMP 221 (394)
T ss_dssp --SSEEEECCCCBCTTTSCCCCHHHHHHHH----------------HHTTC--CTTCCEEEEESCSCGGGCHHHHHHHHH
T ss_pred --CCCEEEECCCCCHHHCCCCCCHHHHHHH----------------HHCCC--CCCCEEEEEEECCCCCCCHHHHHHHHH
T ss_conf --9985883698588875887721468999----------------86499--857669999764413458879999999
Q ss_pred HHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 82235998299999464799887535779999999999998499995899025567688489999997106399977898
Q 003492 596 KNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFY 675 (816)
Q Consensus 596 ~l~~~~~~~~LVIVG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~aadifV~PS~~ 675 (816)
++.+..++++|+|+|+|+. .+.+++++ .++.++|.|+| .++.+++..+++. +|++|.||.+
T Consensus 222 ~l~~~~~~~~l~i~G~g~~------------~~~l~~~~--~~~~~~v~~~g----~~~~~~~~~~~~~-ad~~v~ps~~ 282 (394)
T 3okp_A 222 QVIAARPDAQLLIVGSGRY------------ESTLRRLA--TDVSQNVKFLG----RLEYQDMINTLAA-ADIFAMPART 282 (394)
T ss_dssp HHHHHSTTCEEEEECCCTT------------HHHHHHHT--GGGGGGEEEEE----SCCHHHHHHHHHH-CSEEEECCCC
T ss_pred HHHHHCCCEEEEEECCCHH------------HHHHHHHH--HCCCCEEEECC----CCCHHHHHHHHHH-CCEEEECCCC
T ss_conf 9886189869999868647------------99999987--55457299907----8997899999986-8999945755
Q ss_pred -------CCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf -------9883899999991996898386662000024880999899999999999999987400799999999999999
Q 003492 676 -------EAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLK 748 (816)
Q Consensus 676 -------EgFGltvlEAMA~GlPVIAT~~gG~~EiI~dg~~G~li~p~d~e~lAe~I~~~l~~l~~dp~~~~~ls~~ar~ 748 (816)
|+||++++|||+||+|||+|+.||..|++.++ +|++++++|+++++++|.+++ .|++.++++++++++
T Consensus 283 ~~~~~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~----~~~~~~~~~~~~~~~ 357 (394)
T 3okp_A 283 RGGGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA-TGLVVEGSDVDKLSELLIELL----DDPIRRAAMGAAGRA 357 (394)
T ss_dssp BGGGTBCCSSCHHHHHHHHTTCCEEECSSTTGGGGCCTT-TEEECCTTCHHHHHHHHHHHH----TCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHCCCCEEEECCCCHHHHHHCC-CCEEECCCCHHHHHHHHHHHH----HCHHHHHHHHHHHHH
T ss_conf 566656555673999999759979993899737787468-856728999999999999998----199999999999999
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 998402268999999999999999982
Q 003492 749 RIYERIIICRYTWKIYSERLMTLAGVY 775 (816)
Q Consensus 749 ~v~e~~~~~~ysw~~~a~rll~ly~~y 775 (816)
.+.+ +|+|+.++++++++|+.-
T Consensus 358 ~~~~-----~~s~~~~~~~~~~~~~~~ 379 (394)
T 3okp_A 358 HVEA-----EWSWEIMGERLTNILQSE 379 (394)
T ss_dssp HHHH-----HTBHHHHHHHHHHHHHSC
T ss_pred HHHH-----HCCHHHHHHHHHHHHHHH
T ss_conf 9987-----479999999999999972
No 9
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=1.00 E-value=1 Score=322.63 Aligned_cols=359 Identities=18% Similarity=0.263 Sum_probs=266.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEECCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCC
Q ss_conf 88563124538889999999999999889955552339962469988886676301214877569998068876643211
Q 003492 299 PDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGTEHTHILRVPFRSEKGILRQ 378 (816)
Q Consensus 299 p~tGG~~vyvld~~raL~~eLa~~L~~~G~~V~~~i~IiT~~~p~~~~~~~~~~~e~v~~~~~v~I~rvp~~~~~~~~~~ 378 (816)
|..||.+.++. +|++.|+++||+|+ ++|...+... . ....++.+..++.....
T Consensus 24 p~~GG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~~--------~--~~~~~i~~~~~~~~~~~----- 76 (394)
T 2jjm_A 24 PSVGGSGVVGT--------ELGKQLAERGHEIH----FITSGLPFRL--------N--KVYPNIYFHEVTVNQYS----- 76 (394)
T ss_dssp C--CHHHHHHH--------HHHHHHHHTTCEEE----EECSSCC--------------CCCTTEEEECCCCC--------
T ss_pred CCCCCHHHHHH--------HHHHHHHHCCCEEE----EEECCCCCCC--------C--CCCCCEEEEECCCCCCC-----
T ss_conf 89898789999--------99999996898799----9968887762--------0--03786289852566654-----
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHH-HHHHHHHHC--CCCEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 244466423399999999999998809996199986999169-999999983--99499996289856699970456432
Q 003492 379 WISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNL-VASLLAYKM--GITQCTIAHALEKTKYPDSDIYWKKF 455 (816)
Q Consensus 379 ~isr~~i~p~l~~f~~~~~~~i~~~l~~kPDIIh~h~~~~~l-va~lla~~l--gip~v~t~H~l~~~k~~~~~~~~~~~ 455 (816)
.+...++...+...+.+.+.+. +||+||+|+..... .+.+.++.. ++|++.+.|+.........
T Consensus 77 ---~~~~~~~~~~~~~~l~~~l~~~---~~Dvv~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~------- 143 (394)
T 2jjm_A 77 ---VFQYPPYDLALASKMAEVAQRE---NLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDITVLGSD------- 143 (394)
T ss_dssp ----CCSCCHHHHHHHHHHHHHHHH---TCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECCHHHHHTTTTC-------
T ss_pred ---CCCCCCCCHHHHHHHHHHHHHC---CCCEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC-------
T ss_conf ---0015652079999999999776---999999724337778899988862678777999715752125888-------
Q ss_pred HHHHHCHHHHHHHHHHHHHCCEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCC
Q ss_conf 10000000222889997407899933998884102444533444345555410111278888994899149976888899
Q 003492 456 DEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFP 535 (816)
Q Consensus 456 ~~~y~f~~~~~ae~~al~~aD~IIt~S~~~i~~~k~~~~qy~~~~~f~~p~l~~~~~gi~~~~~ki~VIpnGVD~~~f~p 535 (816)
..+. ......++.+|.++++|....+...+.. +. ..++.+||||+|.+.|.+
T Consensus 144 -~~~~-----~~~~~~~~~ad~ii~~s~~~~~~~~~~~-------------------~~---~~~~~vi~ngv~~~~~~~ 195 (394)
T 2jjm_A 144 -PSLN-----NLIRFGIEQSDVVTAVSHSLINETHELV-------------------KP---NKDIQTVYNFIDERVYFK 195 (394)
T ss_dssp -TTTH-----HHHHHHHHHSSEEEESCHHHHHHHHHHT-------------------CC---SSCEEECCCCCCTTTCCC
T ss_pred -HHHH-----HHHHHHHHHCCEEEECCHHHHHHHHHHH-------------------CC---CCCEEEECCCCCHHHCCC
T ss_conf -7788-----9999998619989997999999999852-------------------87---656799558756876088
Q ss_pred CCHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCC
Q ss_conf 82689988642023000016966542224777799996999990257778978999999982235998299999464799
Q 003492 536 YSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDV 615 (816)
Q Consensus 536 ~~~~~~rl~~~~~~~~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~~~LVIVG~g~~~ 615 (816)
......+ +.+++ ++++++|+++||+.+.||++.+++|+..+.+. ++++|+|+|+|+.
T Consensus 196 ~~~~~~~-------------------~~~~~--~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~-~~~~l~i~G~g~~- 252 (394)
T 2jjm_A 196 RDMTQLK-------------------KEYGI--SESEKILIHISNFRKVKRVQDVVQAFAKIVTE-VDAKLLLVGDGPE- 252 (394)
T ss_dssp CCCHHHH-------------------HHTTC--C---CEEEEECCCCGGGTHHHHHHHHHHHHHS-SCCEEEEECCCTT-
T ss_pred CCHHHHH-------------------HHCCC--CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCEEEEECCCHH-
T ss_conf 6348899-------------------87199--98880899950466535889999999999853-7978999889657-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEEC
Q ss_conf 88753577999999999999849999589902556768848999999710639997789898838999999919968983
Q 003492 616 NKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFAT 695 (816)
Q Consensus 616 ~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~aadifV~PS~~EgFGltvlEAMA~GlPVIAT 695 (816)
.++++++++++++.++|.|+|.. +++..+++. +|++|+||.+|+||++++|||+||+|||+|
T Consensus 253 -----------~~~l~~~~~~~~l~~~v~~~g~~------~~~~~~~~~-adv~v~ps~~e~~~~~~~EAma~G~PvI~~ 314 (394)
T 2jjm_A 253 -----------FCTILQLVKNLHIEDRVLFLGKQ------DNVAELLAM-SDLMLLLSEKESFGLVLLEAMACGVPCIGT 314 (394)
T ss_dssp -----------HHHHHHHHHTTTCGGGBCCCBSC------SCTHHHHHT-CSEEEECCSCCSCCHHHHHHHHTTCCEEEE
T ss_pred -----------HHHHHHHHHHCCCCCEEEEECCH------HHHHHHHHH-CCEEEECCCCCCCCHHHHHHHHCCCCEEEE
T ss_conf -----------99999999973998759992766------659999986-789996566678726899999649988981
Q ss_pred CCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 86662000024880999899999999999999987400799999999999999998402268999999999999999982
Q 003492 696 CHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERIIICRYTWKIYSERLMTLAGVY 775 (816)
Q Consensus 696 ~~gG~~EiI~dg~~G~li~p~d~e~lAe~I~~~l~~l~~dp~~~~~ls~~ar~~v~e~~~~~~ysw~~~a~rll~ly~~y 775 (816)
+.||..|++.++.+|++++++|+++++++|.+++ +|++.+++|++++++++.+ +|+|+.++++++++|+..
T Consensus 315 ~~~~~~e~v~~~~~g~~~~~~d~~~la~~i~~l~----~~~~~~~~~~~~~~~~~~~-----~~s~~~~~~~~~~~~~~~ 385 (394)
T 2jjm_A 315 RVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLL----KDEELHRNMGERARESVYE-----QFRSEKIVSQYETIYYDV 385 (394)
T ss_dssp CCTTSTTTCCBTTTEEEECTTCHHHHHHHHHHHH----HCHHHHHHHHHHHHHHHHH-----HSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHCCCCEEEECCCCHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHH-----HCCHHHHHHHHHHHHHHH
T ss_conf 5898077763488539968999999999999997----4979999999999999987-----379999999999999999
No 10
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=1.00 E-value=1 Score=318.90 Aligned_cols=367 Identities=15% Similarity=0.188 Sum_probs=259.6
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEECCCCCCCCCCCCCCCEEECC
Q ss_conf 25999855667665456899885631245388899999999999998899555523399624699888866763012148
Q 003492 279 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSG 358 (816)
Q Consensus 279 ~rI~iis~h~~~~~~~~lG~p~tGG~~vyvld~~raL~~eLa~~L~~~G~~V~~~i~IiT~~~p~~~~~~~~~~~e~v~~ 358 (816)
|||++++++.. ..||.+.++. +|++.|+++||+|+ ++|.......
T Consensus 1 MkIl~i~~~~~----------~~gG~~~~~~--------~l~~~L~~~G~~V~----v~~~~~~~~~------------- 45 (374)
T 2iw1_A 1 MIVAFCLYKYF----------PFGGLQRDFM--------RIASTVAARGHHVR----VYTQSWEGDC------------- 45 (374)
T ss_dssp -CEEEECSEEC----------TTCHHHHHHH--------HHHHHHHHTTCCEE----EEESEECSCC-------------
T ss_pred CEEEEEEEECC----------CCCCHHHHHH--------HHHHHHHHCCCEEE----EEECCCCCCC-------------
T ss_conf 96999972158----------8761635999--------99999996798489----9964898878-------------
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEC
Q ss_conf 77569998068876643211244466423399999999999998809996199986999169999999983994999962
Q 003492 359 TEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAH 438 (816)
Q Consensus 359 ~~~v~I~rvp~~~~~~~~~~~isr~~i~p~l~~f~~~~~~~i~~~l~~kPDIIh~h~~~~~lva~lla~~lgip~v~t~H 438 (816)
.+++.+.++|...... ......+...+.+.+.. .+||+||+|.+..++.+...++..+++.+.+.|
T Consensus 46 ~~~~~v~~~~~~~~~~-----------~~~~~~~~~~l~~~i~~---~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (374)
T 2iw1_A 46 PKAFELIQVPVKSHTN-----------HGRNAEYYAWVQNHLKE---HPADRVVGFNKMPGLDVYFAADVCYAEKVAQEK 111 (374)
T ss_dssp CTTCEEEECCCCCSSH-----------HHHHHHHHHHHHHHHHH---SCCSEEEESSCCTTCSEEECCSCCHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCC-----------HHHHHHHHHHHHHHHHC---CCCCEEEEECCCCCCEEEECCCCCCCEEEEECC
T ss_conf 8774799971686443-----------01677899999999850---699889996677885213001565421333035
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHH--HCCEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCC
Q ss_conf 89856699970456432100000002228899974--0789993399888410244453344434555541011127888
Q 003492 439 ALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMN--NADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDV 516 (816)
Q Consensus 439 ~l~~~k~~~~~~~~~~~~~~y~f~~~~~ae~~al~--~aD~IIt~S~~~i~~~k~~~~qy~~~~~f~~p~l~~~~~gi~~ 516 (816)
+.. ......+.+... .+...+. .+|.++++|....+...+. .|++
T Consensus 112 ~~~-----------~~~~~~~~~~~~--~~~~~~~~~~~d~ii~~s~~~~~~~~~~-------------------~~~~- 158 (374)
T 2iw1_A 112 GFL-----------YRLTSRYRHYAA--FERATFEQGKSTKLMMLTDKQIADFQKH-------------------YQTE- 158 (374)
T ss_dssp CHH-----------HHTSHHHHHHHH--HHHHHHSTTCCCEEEESCHHHHHHHHHH-------------------HCCC-
T ss_pred CCH-----------HHHCHHHHHHHH--HHHHHHHCCCCCEEEECCHHHHHHHHHH-------------------HCCC-
T ss_conf 621-----------210477899999--9999864267757998698999999997-------------------1897-
Q ss_pred CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 89948991499768888998268998864202300001696654222477779999699999025777897899999998
Q 003492 517 FDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGK 596 (816)
Q Consensus 517 ~~~ki~VIpnGVD~~~f~p~~~~~~rl~~~~~~~~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~~Kgi~~LieA~~~ 596 (816)
..++.++|||+|.+.|.+......+. . .++.+|+ ++++++++++||+.+.||++.+++++..
T Consensus 159 -~~~~~vi~ngv~~~~~~~~~~~~~~~-~--------------~~~~~~~--~~~~~~i~~~G~~~~~K~~~~li~a~~~ 220 (374)
T 2iw1_A 159 -PERFQILPPGIYPDRKYSEQIPNSRE-I--------------YRQKNGI--KEQQNLLLQVGSDFGRKGVDRSIEALAS 220 (374)
T ss_dssp -GGGEEECCCCCCGGGSGGGSCTTHHH-H--------------HHHHTTC--CTTCEEEEEECSCTTTTTHHHHHHHHHT
T ss_pred -HHHEEEECCCCCHHHCCCCCCHHHHH-H--------------HHHHHCC--CCCCEEEEEECCCHHHCCHHHHHHHHHH
T ss_conf -11068856985877617644235799-9--------------9997289--9787299996464101388999999998
Q ss_pred HHCC-CCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 2235-998299999464799887535779999999999998499995899025567688489999997106399977898
Q 003492 597 NSQL-RELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFY 675 (816)
Q Consensus 597 l~~~-~~~~~LVIVG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~aadifV~PS~~ 675 (816)
+.+. .++++|+++|++.. +.++++++++++.++|.|+|. .+++..+++. +|++|.||.+
T Consensus 221 l~~~~~~~~~l~i~G~g~~-------------~~~~~~~~~~~~~~~v~~~g~------~~~~~~~~~~-ad~~v~ps~~ 280 (374)
T 2iw1_A 221 LPESLRHNTLLFVVGQDKP-------------RKFEALAEKLGVRSNVHFFSG------RNDVSELMAA-ADLLLHPAYQ 280 (374)
T ss_dssp SCHHHHHTEEEEEESSSCC-------------HHHHHHHHHHTCGGGEEEESC------CSCHHHHHHH-CSEEEECCSC
T ss_pred HHHCCCCCEEEEEECCCCH-------------HHHHHHHHHCCCCCCEEECCC------CCCHHHHHHH-CCEEEECCCC
T ss_conf 6760488669999708987-------------999999997398773797788------4038999984-6889835424
Q ss_pred CCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 988389999999199689838666200002488099989-9999999999999987400799999999999999998402
Q 003492 676 EAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHID-PYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERI 754 (816)
Q Consensus 676 EgFGltvlEAMA~GlPVIAT~~gG~~EiI~dg~~G~li~-p~d~e~lAe~I~~~l~~l~~dp~~~~~ls~~ar~~v~e~~ 754 (816)
|+||++++|||+||+|||+|+.||..|++.++.+|++++ ++|+++++++|.+++ +|++.++++++++++.+.+
T Consensus 281 e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~----~~~~~~~~~~~~~~~~~~~-- 354 (374)
T 2iw1_A 281 EAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKAL----TQSPLRMAWAENARHYADT-- 354 (374)
T ss_dssp CSSCHHHHHHHHHTCCEEEETTSTTTHHHHHHTCEEEECSSCCHHHHHHHHHHHH----HCHHHHHHHHHHHHHHHHH--
T ss_pred CCCCCHHHHHHHCCCCEEEECCCCCHHHHCCCCCEEEECCCCCHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHH--
T ss_conf 7755699999977998898269980444306983199679999899999999997----1949999999999999987--
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q ss_conf 268999999999999999982
Q 003492 755 IICRYTWKIYSERLMTLAGVY 775 (816)
Q Consensus 755 ~~~~ysw~~~a~rll~ly~~y 775 (816)
|+|...++++.++++.|
T Consensus 355 ----~~~~~~~~~~~~~l~~~ 371 (374)
T 2iw1_A 355 ----QDLYSLPEKAADIITGG 371 (374)
T ss_dssp ----SCCSCHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHHHHHH
T ss_conf ----53899999999999986
Done!