BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003494
         (815 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q91VX2|UBAP2_MOUSE Ubiquitin-associated protein 2 OS=Mus musculus GN=Ubap2 PE=2 SV=1
          Length = 1132

 Score = 39.7 bits (91), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 18/89 (20%)

Query: 28  VQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLL---------------SQDPFHEVKSK 72
           V+ L E+    + E    L +CN D N+A+N LL                ++   E    
Sbjct: 57  VKQLMEVTGKNQDECIVALHDCNGDVNKAINILLEGNSDTTSWETVGGKKKNFGRESSEN 116

Query: 73  RDKRKESKDTTDSRSRGASNTSNRGGRGG 101
           ++ R++  +   SR RG   T+NR GRGG
Sbjct: 117 KENREKRTEREASRGRG---TNNRKGRGG 142


>sp|Q86S05|LIG_DROME Protein lingerer OS=Drosophila melanogaster GN=lig PE=1 SV=1
          Length = 1375

 Score = 38.9 bits (89), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 21/98 (21%)

Query: 31  LKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQDP---FHEVKSKRDKRKESKDTTDS-- 85
           L  +    E E+   L EC+ D   A N L+ + P   F + + KR K K + +T D   
Sbjct: 92  LLTMTQRSEEEVCCALNECDYDLEAAANFLIEELPQGAFAKYEKKR-KNKAANNTADGAA 150

Query: 86  --------------RSRGASNTSNRGG-RGGTDRYGVR 108
                         R +  + +SNRGG RG +D  G R
Sbjct: 151 GDGDWADGNGNADRREKSRNRSSNRGGTRGSSDSRGWR 188


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.307    0.124    0.359 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 332,697,409
Number of Sequences: 539616
Number of extensions: 15139975
Number of successful extensions: 43144
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 273
Number of HSP's that attempted gapping in prelim test: 42280
Number of HSP's gapped (non-prelim): 902
length of query: 815
length of database: 191,569,459
effective HSP length: 126
effective length of query: 689
effective length of database: 123,577,843
effective search space: 85145133827
effective search space used: 85145133827
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 66 (30.0 bits)