BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003495
(815 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 280 bits (717), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 143/243 (58%), Positives = 177/243 (72%), Gaps = 10/243 (4%)
Query: 29 PEAGVIPRAVQQIFDTLESQNAEYSVKVTFLELYNEEITDLLAPDEISRAAVEDKQKKQL 88
P AG+IPR + QIF+ L E+SVKV+ LE+YNEE+ DLL P ++L
Sbjct: 131 PLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPS--------SDVSERL 182
Query: 89 PLMED--GKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSIT 146
+ +D K GV+++GLEE V + E++ +LE+G+AKR TA TL+N SSRSHS+FS+T
Sbjct: 183 QMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVT 242
Query: 147 IHIKEATPEGEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINAL 206
IH+KE T +GEEL+K GKLNLVDLAGSENI RS IN+SLLTLGRVI AL
Sbjct: 243 IHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITAL 302
Query: 207 VEHLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKNIKNK 266
VE H+PYR+SKLTR+L+DSLGGRT+T IIAT+SPA LEETLSTL+YAHRAKNI NK
Sbjct: 303 VERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNK 362
Query: 267 PEV 269
PEV
Sbjct: 363 PEV 365
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 279 bits (714), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 143/243 (58%), Positives = 177/243 (72%), Gaps = 10/243 (4%)
Query: 29 PEAGVIPRAVQQIFDTLESQNAEYSVKVTFLELYNEEITDLLAPDEISRAAVEDKQKKQL 88
P AG+IPR + QIF+ L E+SVKV+ LE+YNEE+ DLL P ++L
Sbjct: 131 PLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPS--------SDVSERL 182
Query: 89 PLMED--GKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSIT 146
+ +D K GV+++GLEE V + E++ +LE+G+AKR TA TL+N SSRSHS+FS+T
Sbjct: 183 QMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVT 242
Query: 147 IHIKEATPEGEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINAL 206
IH+KE T +GEEL+K GKLNLVDLAGSENI RS IN+SLLTLGRVI AL
Sbjct: 243 IHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITAL 302
Query: 207 VEHLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKNIKNK 266
VE H+PYR+SKLTR+L+DSLGGRT+T IIAT+SPA LEETLSTL+YAHRAKNI NK
Sbjct: 303 VERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNK 362
Query: 267 PEV 269
PEV
Sbjct: 363 PEV 365
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 279 bits (713), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 143/243 (58%), Positives = 177/243 (72%), Gaps = 10/243 (4%)
Query: 29 PEAGVIPRAVQQIFDTLESQNAEYSVKVTFLELYNEEITDLLAPDEISRAAVEDKQKKQL 88
P AG+IPR + QIF+ L E+SVKV+ LE+YNEE+ DLL P ++L
Sbjct: 131 PLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPS--------SDVSERL 182
Query: 89 PLMED--GKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSIT 146
+ +D K GV+++GLEE V + E++ +LE+G+AKR TA TL+N SSRSHS+FS+T
Sbjct: 183 QMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVT 242
Query: 147 IHIKEATPEGEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINAL 206
IH+KE T +GEEL+K GKLNLVDLAGSENI RS IN+SLLTLGRVI AL
Sbjct: 243 IHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITAL 302
Query: 207 VEHLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKNIKNK 266
VE H+PYR+SKLTR+L+DSLGGRT+T IIAT+SPA LEETLSTL+YAHRAKNI NK
Sbjct: 303 VERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNK 362
Query: 267 PEV 269
PEV
Sbjct: 363 PEV 365
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 279 bits (713), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 143/243 (58%), Positives = 177/243 (72%), Gaps = 10/243 (4%)
Query: 29 PEAGVIPRAVQQIFDTLESQNAEYSVKVTFLELYNEEITDLLAPDEISRAAVEDKQKKQL 88
P AG+IPR + QIF+ L E+SVKV+ LE+YNEE+ DLL P ++L
Sbjct: 130 PLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPS--------SDVSERL 181
Query: 89 PLMED--GKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSIT 146
+ +D K GV+++GLEE V + E++ +LE+G+AKR TA TL+N SSRSHS+FS+T
Sbjct: 182 QMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVT 241
Query: 147 IHIKEATPEGEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINAL 206
IH+KE T +GEEL+K GKLNLVDLAGSENI RS IN+SLLTLGRVI AL
Sbjct: 242 IHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITAL 301
Query: 207 VEHLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKNIKNK 266
VE H+PYR+SKLTR+L+DSLGGRT+T IIAT+SPA LEETLSTL+YAHRAKNI NK
Sbjct: 302 VERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNK 361
Query: 267 PEV 269
PEV
Sbjct: 362 PEV 364
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 279 bits (713), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 143/243 (58%), Positives = 177/243 (72%), Gaps = 10/243 (4%)
Query: 29 PEAGVIPRAVQQIFDTLESQNAEYSVKVTFLELYNEEITDLLAPDEISRAAVEDKQKKQL 88
P AG+IPR + QIF+ L E+SVKV+ LE+YNEE+ DLL P ++L
Sbjct: 131 PLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPS--------SDVSERL 182
Query: 89 PLMED--GKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSIT 146
+ +D K GV+++GLEE V + E++ +LE+G+AKR TA TL+N SSRSHS+FS+T
Sbjct: 183 QMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVT 242
Query: 147 IHIKEATPEGEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINAL 206
IH+KE T +GEEL+K GKLNLVDLAGSENI RS IN+SLLTLGRVI AL
Sbjct: 243 IHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITAL 302
Query: 207 VEHLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKNIKNK 266
VE H+PYR+SKLTR+L+DSLGGRT+T IIAT+SPA LEETLSTL+YAHRAKNI NK
Sbjct: 303 VERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNK 362
Query: 267 PEV 269
PEV
Sbjct: 363 PEV 365
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 279 bits (713), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 143/243 (58%), Positives = 177/243 (72%), Gaps = 10/243 (4%)
Query: 29 PEAGVIPRAVQQIFDTLESQNAEYSVKVTFLELYNEEITDLLAPDEISRAAVEDKQKKQL 88
P AG+IPR + QIF+ L E+SVKV+ LE+YNEE+ DLL P ++L
Sbjct: 133 PLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPS--------SDVSERL 184
Query: 89 PLMED--GKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSIT 146
+ +D K GV+++GLEE V + E++ +LE+G+AKR TA TL+N SSRSHS+FS+T
Sbjct: 185 QMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVT 244
Query: 147 IHIKEATPEGEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINAL 206
IH+KE T +GEEL+K GKLNLVDLAGSENI RS IN+SLLTLGRVI AL
Sbjct: 245 IHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITAL 304
Query: 207 VEHLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKNIKNK 266
VE H+PYR+SKLTR+L+DSLGGRT+T IIAT+SPA LEETLSTL+YAHRAKNI NK
Sbjct: 305 VERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNK 364
Query: 267 PEV 269
PEV
Sbjct: 365 PEV 367
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 278 bits (712), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 143/243 (58%), Positives = 177/243 (72%), Gaps = 10/243 (4%)
Query: 29 PEAGVIPRAVQQIFDTLESQNAEYSVKVTFLELYNEEITDLLAPDEISRAAVEDKQKKQL 88
P AG+IPR + QIF+ L E+SVKV+ LE+YNEE+ DLL P ++L
Sbjct: 122 PLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPS--------SDVSERL 173
Query: 89 PLMED--GKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSIT 146
+ +D K GV+++GLEE V + E++ +LE+G+AKR TA TL+N SSRSHS+FS+T
Sbjct: 174 QMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVT 233
Query: 147 IHIKEATPEGEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINAL 206
IH+KE T +GEEL+K GKLNLVDLAGSENI RS IN+SLLTLGRVI AL
Sbjct: 234 IHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITAL 293
Query: 207 VEHLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKNIKNK 266
VE H+PYR+SKLTR+L+DSLGGRT+T IIAT+SPA LEETLSTL+YAHRAKNI NK
Sbjct: 294 VERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNK 353
Query: 267 PEV 269
PEV
Sbjct: 354 PEV 356
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 276 bits (707), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 142/243 (58%), Positives = 176/243 (72%), Gaps = 10/243 (4%)
Query: 29 PEAGVIPRAVQQIFDTLESQNAEYSVKVTFLELYNEEITDLLAPDEISRAAVEDKQKKQL 88
P G+IPR + QIF+ L E+SVKV+ LE+YNEE+ DLL P ++L
Sbjct: 131 PLDGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPS--------SDVSERL 182
Query: 89 PLMED--GKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSIT 146
+ +D K GV+++GLEE V + E++ +LE+G+AKR TA TL+N SSRSHS+FS+T
Sbjct: 183 QMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVT 242
Query: 147 IHIKEATPEGEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINAL 206
IH+KE T +GEEL+K GKLNLVDLAGSENI RS IN+SLLTLGRVI AL
Sbjct: 243 IHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITAL 302
Query: 207 VEHLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKNIKNK 266
VE H+PYR+SKLTR+L+DSLGGRT+T IIAT+SPA LEETLSTL+YAHRAKNI NK
Sbjct: 303 VERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNK 362
Query: 267 PEV 269
PEV
Sbjct: 363 PEV 365
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 275 bits (702), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 141/241 (58%), Positives = 175/241 (72%), Gaps = 10/241 (4%)
Query: 29 PEAGVIPRAVQQIFDTLESQNAEYSVKVTFLELYNEEITDLLAPDEISRAAVEDKQKKQL 88
P AG+IPR + QIF+ L E+SVKV+ LE+YNEE+ DLL P ++L
Sbjct: 116 PLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPS--------SDVSERL 167
Query: 89 PLMED--GKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSIT 146
+ +D K GV+++GLEE V + E++ +LE+G+AKR TA TL+N SSRSHS+FS+T
Sbjct: 168 QMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVT 227
Query: 147 IHIKEATPEGEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINAL 206
IH+KE T +GEEL+K GKLNLVDLAGSENI RS IN+SLLTLGRVI AL
Sbjct: 228 IHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITAL 287
Query: 207 VEHLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKNIKNK 266
VE H+PYR+SKLTR+L+DSLGGRT+T IIAT+SPA LEETLSTL+YAHRAKNI NK
Sbjct: 288 VERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNK 347
Query: 267 P 267
P
Sbjct: 348 P 348
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 264 bits (675), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 131/241 (54%), Positives = 177/241 (73%), Gaps = 9/241 (3%)
Query: 30 EAGVIPRAVQQIFDTLESQNAEYSVKVTFLELYNEEITDLLAPDEISRAAVEDKQKKQLP 89
+ G+IPRA+ +FD L EY++++++LELYNEE+ DLL+ D+ ++ + D K
Sbjct: 135 DIGIIPRALSHLFDELRMMEVEYTMRISYLELYNEELCDLLSTDDTTKIRIFDDSTK--- 191
Query: 90 LMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHI 149
KG V+++GLEE V S +++ LLE+G +R+TA TL+N QSSRSH++FSI +HI
Sbjct: 192 -----KGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHI 246
Query: 150 KEATPEGEELIKCGKLNLVDLAGSENISRSXXXXXXXXX-XXXINKSLLTLGRVINALVE 208
+E EGE+++K GKLNLVDLAGSEN+S++ IN+SLLTLGRVI ALV+
Sbjct: 247 RENGIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVD 306
Query: 209 HLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKNIKNKPE 268
H+PYR+SKLTRLL++SLGGRTKT IIAT+SP +EETLSTL+YAHRAKNI+NKPE
Sbjct: 307 RAPHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPE 366
Query: 269 V 269
V
Sbjct: 367 V 367
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 203 bits (516), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 120/267 (44%), Positives = 155/267 (58%), Gaps = 20/267 (7%)
Query: 10 GVNVQLCSMRQSGPN-----GELPPEAGVIPRAVQQIFDTLESQ--NAEYSVKVTFLELY 62
G N + + Q+G G E G IP + + +FD + S N + V ++LELY
Sbjct: 88 GFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELY 147
Query: 63 NEEITDLLAPDEISRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGS 122
NEEI DL+ K +LPL ED G+ V GL VT+A+E+ L+++G
Sbjct: 148 NEEIRDLI------------KNNTKLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGF 195
Query: 123 AKRRTAETLLNKQSSRSHSLFSITIHIKEATPEGEELIKCGKLNLVDLAGSENISRSXXX 182
A R A T +N SSRSHS+F + I E E +E+I+ GKLNLVDLAGSE S++
Sbjct: 196 ANRHVAATQMNDTSSRSHSIFMVRIECSEVI-ENKEVIRVGKLNLVDLAGSERQSKTGAT 254
Query: 183 XXXXXXXXXINKSLLTLGRVINALVEHLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVSP 242
IN SL LG VI+ LVE HIPYRDSKLTRLL+DSLGG +KT + A +SP
Sbjct: 255 GETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLGGNSKTLMCANISP 314
Query: 243 AVHCLEETLSTLDYAHRAKNIKNKPEV 269
A +ET+STL YA RAK IKNKP +
Sbjct: 315 ASTNYDETMSTLRYADRAKQIKNKPRI 341
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 202 bits (514), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 116/244 (47%), Positives = 149/244 (61%), Gaps = 12/244 (4%)
Query: 28 PPEAGVIPRAVQQIFDTL-ESQNAEYSVKVTFLELYNEEITDLLAPDEISRAAVEDKQKK 86
P + GVIP + IF + SQN +Y V+ ++LE+Y EEI DLL+ D Q K
Sbjct: 126 PEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKD----------QTK 175
Query: 87 QLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSIT 146
+L L E GV V+ L + S EI ++ G+ R T +N+ SSRSH++F IT
Sbjct: 176 RLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVIT 235
Query: 147 IHIKEATPEGEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINAL 206
I E +GE I+ GKLNLVDLAGSE +++ IN SL LG VI+AL
Sbjct: 236 IECSEVGLDGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISAL 295
Query: 207 VEHLG-HIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKNIKN 265
V+ HIPYRDSKLTRLL+DSLGG KT ++A V PA + +EETL+TL YA+RAKNIKN
Sbjct: 296 VDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKN 355
Query: 266 KPEV 269
KP V
Sbjct: 356 KPRV 359
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 194 bits (492), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 112/247 (45%), Positives = 150/247 (60%), Gaps = 17/247 (6%)
Query: 28 PPEAGVIPRAVQQIFDTLESQ--NAEYSVKVTFLELYNEEITDLLAPDEISRAAVEDKQK 85
P GVIPR V+QIF ++ S N EY+V+V+++E+Y E I DLLAP Q
Sbjct: 106 PDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAP-----------QN 154
Query: 86 KQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSI 145
LP+ E+ GV V+GL E V+S E++ ++ RG R A T +N++SSRSHS+F I
Sbjct: 155 DNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVI 214
Query: 146 TIHIKEATPEGEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINA 205
TI K K G+L LVDLAGSE + ++ INKSL LG VINA
Sbjct: 215 TITQKNVETGSA---KSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINA 271
Query: 206 LVE-HLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKNIK 264
L + H+PYRDSKLTR+L++SLGG ++T +I SP+ + ETLSTL + RAK+IK
Sbjct: 272 LTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIK 331
Query: 265 NKPEVYA 271
NK +V A
Sbjct: 332 NKAKVNA 338
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 109/268 (40%), Positives = 149/268 (55%), Gaps = 36/268 (13%)
Query: 28 PPEAGVIPRAVQQIFDTL-ESQNAEYSVKVTFLELYNEEITDLLAPDEISRAAVEDKQKK 86
P GVIP A + IF + SQN +Y V+ ++LE+Y EEI DLL+ + K
Sbjct: 126 PELRGVIPNAFEHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLS----------KEPGK 175
Query: 87 QLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSIT 146
+L L E+ + GV ++ L + + EI ++ G+ R T +N+ SSRSH++F IT
Sbjct: 176 RLELKENPETGVYIKDLSSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIIT 235
Query: 147 IHIKEATPEGEELIKCGKLNLVDLAGSENISRSXXXXXXXXXX----------------- 189
+ E +G++ I+ GKLNLVDLAGSE +++
Sbjct: 236 VECSERGSDGQDHIRVGKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAG 295
Query: 190 -------XXINKSLLTLGRVINALVEHLG-HIPYRDSKLTRLLRDSLGGRTKTCIIATVS 241
IN SL LG VI AL + HIPYRDSKLTRLL+DSLGG KT ++AT+
Sbjct: 296 GERPKEASKINLSLSALGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLG 355
Query: 242 PAVHCLEETLSTLDYAHRAKNIKNKPEV 269
PA H +E+LSTL +A+RAKNIKNKP V
Sbjct: 356 PASHSYDESLSTLRFANRAKNIKNKPRV 383
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 169 bits (429), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 99/240 (41%), Positives = 139/240 (57%), Gaps = 16/240 (6%)
Query: 28 PPEAGVIPRAVQQIFDTLES--QNAEYSVKVTFLELYNEEITDLLAPDEISRAAVEDKQK 85
P G+IPR VQ IF+ + S +N E+ +KV++ E+Y ++I DLL D K
Sbjct: 102 PEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLL-----------DVSK 150
Query: 86 KQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSI 145
L + ED V+G E V S E+ ++ G + R A T +N+ SSRSHS+F
Sbjct: 151 TNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIF-- 208
Query: 146 TIHIKEATPEGEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINA 205
I++K+ + E+ + GKL LVDLAGSE +S++ INKSL LG VI+A
Sbjct: 209 LINVKQENTQTEQKLS-GKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISA 267
Query: 206 LVEHLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKNIKN 265
L E ++PYRDSK+TR+L+DSLGG +T I+ SP+ + ET STL + RAK IKN
Sbjct: 268 LAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKN 327
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 169 bits (429), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 99/240 (41%), Positives = 139/240 (57%), Gaps = 16/240 (6%)
Query: 28 PPEAGVIPRAVQQIFDTLES--QNAEYSVKVTFLELYNEEITDLLAPDEISRAAVEDKQK 85
P G+IPR VQ IF+ + S +N E+ +KV++ E+Y ++I DLL D K
Sbjct: 102 PEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLL-----------DVSK 150
Query: 86 KQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSI 145
L + ED V+G E V S E+ ++ G + R A T +N+ SSRSHS+F
Sbjct: 151 TNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIF-- 208
Query: 146 TIHIKEATPEGEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINA 205
I++K+ + E+ + GKL LVDLAGSE +S++ INKSL LG VI+A
Sbjct: 209 LINVKQENTQTEQKLS-GKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISA 267
Query: 206 LVEHLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKNIKN 265
L E ++PYRDSK+TR+L+DSLGG +T I+ SP+ + ET STL + RAK IKN
Sbjct: 268 LAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKN 327
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 166 bits (420), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 144/237 (60%), Gaps = 17/237 (7%)
Query: 32 GVIPRAVQQIFDTLESQ--NAEYSVKVTFLELYNEEITDLLAPDEISRAAVEDKQKKQLP 89
G+IPR V IF+ + + N E+ +KV++ E+Y ++I DLL +++ + EDK + +P
Sbjct: 113 GIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNR--VP 170
Query: 90 LMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHI 149
V+G E V+S ++F ++E G + R A T +N+ SSRSHS+F I++
Sbjct: 171 Y---------VKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVF--LINV 219
Query: 150 KEATPEGEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALVE- 208
K+ E ++ + GKL LVDLAGSE +S++ INKSL LG VI+AL +
Sbjct: 220 KQENLENQKKL-SGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADG 278
Query: 209 HLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKNIKN 265
+ HIPYRDSKLTR+L++SLGG +T I+ SPA ET STLD+ RAK +KN
Sbjct: 279 NKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKN 335
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/238 (40%), Positives = 137/238 (57%), Gaps = 16/238 (6%)
Query: 28 PPEAGVIPRAVQQIFDTLES--QNAEYSVKVTFLELYNEEITDLLAPDEISRAAVEDKQK 85
P G+IPR VQ IF+ + S +N E+ +KV++ E+Y ++I DLL D K
Sbjct: 102 PEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLL-----------DVSK 150
Query: 86 KQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSI 145
L + ED V+G E V S E+ ++ G + R A T +N+ SSRSHS+F
Sbjct: 151 TNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIF-- 208
Query: 146 TIHIKEATPEGEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINA 205
I++K+ + E+ + GKL LVDLAGSE +S++ INKSL LG VI+A
Sbjct: 209 LINVKQENTQTEQKLS-GKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISA 267
Query: 206 LVEHLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKNI 263
L E ++PYRDSK+TR+L+DSLGG +T I+ SP+ + ET STL + RAK I
Sbjct: 268 LAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 163 bits (412), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 157/293 (53%), Gaps = 18/293 (6%)
Query: 10 GVNVQLCSMRQSGPNGELP-----PEAGVIPRAVQQIFDTL--ESQNAEYSVKVTFLELY 62
G NV + + Q+G G+ PRA+ ++F + +S +S+K +ELY
Sbjct: 78 GYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELY 137
Query: 63 NEEITDLLAPDEISRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGS 122
+ + DLL P + R +L + +D KG V V + +++ E+ T+++RGS
Sbjct: 138 QDTLVDLLLPKQAKRL--------KLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGS 189
Query: 123 AKRRTAETLLNKQSSRSHSLFSITIHIKEATPEGEELIKCGKLNLVDLAGSENISRSXXX 182
+R T TL+N+QSSRSH + S+ I E+T + I GKL+ VDLAGSE + +S
Sbjct: 190 EQRHTTGTLMNEQSSRSHLIVSVII---ESTNLQTQAIARGKLSFVDLAGSERVKKSGSA 246
Query: 183 XXXXXXXXXINKSLLTLGRVINALVEHLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVSP 242
INKSL LG VI+AL HIPYR+ KLT L+ DSLGG KT + +SP
Sbjct: 247 GNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISP 306
Query: 243 AVHCLEETLSTLDYAHRAKNIKNKPEVYAAREKNGVYIPKERYYQEESERKSN 295
A L+ET ++L YA R ++I N P + ++ Y++E++ RK +
Sbjct: 307 AESNLDETHNSLTYASRVRSIVNDPSKNVSSKEVARLKKLVSYWKEQAGRKGD 359
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 101/242 (41%), Positives = 141/242 (58%), Gaps = 19/242 (7%)
Query: 30 EAGVIPRAVQQIFD-TLESQNAE--YSVKVTFLELYNEEITDLLAPDEISRAAVEDKQKK 86
+ G+IPR +F+ T + +N E + V+V+++E+YNE++ DLL P ++
Sbjct: 116 QPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPK---------GSRQ 166
Query: 87 QLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSIT 146
L + E G V GL + VTS +I +L+ G+ R A T +N++SSRSH++F IT
Sbjct: 167 TLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKIT 226
Query: 147 I-HIKEATPEGEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINA 205
+ H G K GKL+LVDLAGSE +++ INKSL TLG VI+A
Sbjct: 227 LTHTLYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISA 286
Query: 206 LVEHLG------HIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHR 259
L + +PYRDS LT LL+DSLGG +KT ++ATVSPA +ETLSTL YA R
Sbjct: 287 LADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADR 346
Query: 260 AK 261
AK
Sbjct: 347 AK 348
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 144/243 (59%), Gaps = 22/243 (9%)
Query: 30 EAGVIPRAVQQIFDTLESQNA-EYSVKVTFLELYNEEITDLLAPDEISRAAVEDKQKKQL 88
E G++PRA+ + F ++ + + V V++LE+Y EE DLL E+ A+ + +
Sbjct: 113 EQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLL---EVGTAS------RDI 163
Query: 89 PLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIH 148
L ED +G V++ G++E V E+ +LLE G+A R T T LN SSRSH++F++T+
Sbjct: 164 QLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLE 223
Query: 149 IKEATP-------EGEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGR 201
+ P G+ L+ K + VDLAGSE + ++ IN SLL LG
Sbjct: 224 QRGRAPSRLPRPAPGQLLVS--KFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGN 281
Query: 202 VINALVE---HLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAH 258
VI+AL + HIPYRDSK+TR+L+DSLGG KT +IA VSP+ +ETL+TL+YA
Sbjct: 282 VISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYAS 341
Query: 259 RAK 261
RA+
Sbjct: 342 RAQ 344
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 155 bits (393), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 98/265 (36%), Positives = 140/265 (52%), Gaps = 18/265 (6%)
Query: 10 GVNVQLCSMRQSGPNGELP-----PEAGVIPRAVQQIFDTL--ESQNAEYSVKVTFLELY 62
G NV + + Q+G G+ PRA +++F+ L +S+ +S+K +ELY
Sbjct: 86 GYNVCIFAYGQTGSGKTFTIYGHESNPGLTPRATKELFNILKRDSKRFSFSLKAYMVELY 145
Query: 63 NEEITDLLAPDEISRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGS 122
+ + DLL P R +E K+ D KG V V + +++ E+ +LERGS
Sbjct: 146 QDTLVDLLLPKSARRLKLEIKK--------DSKGMVFVENVTTIPISTLEELRMILERGS 197
Query: 123 AKRRTAETLLNKQSSRSHSLFSITIHIKEATPEGEELIKCGKLNLVDLAGSENISRSXXX 182
+R + T +N++SSRSH + S+ I E+ + GKL+ VDLAGSE + +S
Sbjct: 198 ERRHVSGTNMNEESSRSHLILSVVI---ESIDLQTQSAARGKLSFVDLAGSERVKKSGSA 254
Query: 183 XXXXXXXXXINKSLLTLGRVINALVEHLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVSP 242
INKSL LG VI AL HIPYR+ KLT L+ DSLGG KT + VSP
Sbjct: 255 GNQLKEAQSINKSLSALGDVIGALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSP 314
Query: 243 AVHCLEETLSTLDYAHRAKNIKNKP 267
A L+ET ++L YA R + I N P
Sbjct: 315 AESNLDETYNSLLYASRVRTIVNDP 339
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 144/243 (59%), Gaps = 22/243 (9%)
Query: 30 EAGVIPRAVQQIFDTLESQNA-EYSVKVTFLELYNEEITDLLAPDEISRAAVEDKQKKQL 88
E G++PRA+ + F ++ + + V V++LE+Y EE DLL E+ A+ + +
Sbjct: 113 EQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLL---EVGTAS------RDI 163
Query: 89 PLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIH 148
L ED +G V++ G++E V E+ +LLE G+A R T T LN SSRSH++F++T+
Sbjct: 164 QLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLK 223
Query: 149 IKEATP-------EGEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGR 201
+ P G+ L+ K + VDLAGSE + ++ IN SLL LG
Sbjct: 224 QRGRAPSRLPRPAPGQLLVS--KFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGN 281
Query: 202 VINALVE---HLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAH 258
VI+AL + +IPYRDSK+TR+L+DSLGG KT +IA VSP+ +ETL+TL+YA
Sbjct: 282 VISALGDPQRRGSNIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYAS 341
Query: 259 RAK 261
RA+
Sbjct: 342 RAQ 344
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 152 bits (383), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 138/243 (56%), Gaps = 16/243 (6%)
Query: 32 GVIPRAVQQIFDTLES-QNAEYSVKVTFLELYNEEITDLLAPDEISRAAVEDKQKKQLPL 90
GVIPRA+ IF ++ + E+ ++V+++E+YNE ITDLL + + K L +
Sbjct: 103 GVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQ---------KMKPLII 153
Query: 91 MEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIK 150
ED V V L EE+V ++ + +G R ET +N++SSRSH++F + + +
Sbjct: 154 REDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESR 213
Query: 151 E-ATPEG-EELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALVE 208
E P E +K LNLVDLAGSE +++ IN+SL LG+VI L +
Sbjct: 214 EKGEPSNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSD 273
Query: 209 HL--GHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKNIKNK 266
G I YRDSKLTR+L++SLGG KT II T++P +ETL+ L +A AK +KN
Sbjct: 274 GQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNT 331
Query: 267 PEV 269
P V
Sbjct: 332 PYV 334
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 150 bits (379), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 134/239 (56%), Gaps = 17/239 (7%)
Query: 30 EAGVIPRAVQQIFDTLESQNAE--YSVKVTFLELYNEEITDLLAPDEISRAAVEDKQKKQ 87
E GV+ + ++ ++ E S V++LE+YNE+I DLL
Sbjct: 129 EPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLV------------NSGP 176
Query: 88 LPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITI 147
L + ED + GV+V GL S+ EI LL+ G+ R T +N SSRSH++F I +
Sbjct: 177 LAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYL 236
Query: 148 HIKEATPEGEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALV 207
++ T + ++ K++L+DLAGSE S S IN+SLL LG VINAL
Sbjct: 237 RQQDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALA 296
Query: 208 EHL---GHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKNI 263
+ HIPYR+SKLTRLL+DSLGG +T +IA VSP+ ++T +TL YA+RAK+I
Sbjct: 297 DSKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 100/269 (37%), Positives = 135/269 (50%), Gaps = 40/269 (14%)
Query: 28 PPEAGVIPRAVQQIFDTL-----ESQNAEYSVKVTFLELYNEEITDLLAPDEISRAAVED 82
P + G+IPR + +F + E+ N Y+VKV++ E+YNE + DLLAP V +
Sbjct: 158 PDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAP------VVPN 211
Query: 83 KQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSL 142
K L + E G V+ L E V EI + G R A T +N SSRSH++
Sbjct: 212 KPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAV 271
Query: 143 FSIT---IHIKEATPEGEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTL 199
F+I IH T + E + ++ LVDLAGSE + INKSL TL
Sbjct: 272 FTIMLKQIHHDLETDDTTE--RSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTL 329
Query: 200 GRVINALVEHLGH----------------------IPYRDSKLTRLLRDSLGGRTKTCII 237
GRVI AL + +PYRDS LT LL+DSLGG +KT +I
Sbjct: 330 GRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMI 389
Query: 238 ATVSPAVHCLEETLSTLDYAHRAKNIKNK 266
A +SP + +ETLSTL YA +AK I+ +
Sbjct: 390 ACISPTDY--DETLSTLRYADQAKRIRTR 416
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 98/262 (37%), Positives = 141/262 (53%), Gaps = 18/262 (6%)
Query: 10 GVNVQLCSMRQSGPNGELPPEA-----GVIPRAVQQIFDTLE--SQNAEYSVKVTFLELY 62
G NV + + Q+G E G+ RA+Q +F ++ + + EY++ V+ E+Y
Sbjct: 79 GFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIY 138
Query: 63 NEEITDLLAPDEISRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGS 122
NE + DLL E ++K ++ L DG G + V GL E V S +I + E G
Sbjct: 139 NEVLRDLLGK--------EPQEKLEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGH 190
Query: 123 AKRRTAETLLNKQSSRSHSLFSITIHIKEATPEGEELIKCGKLNLVDLAGSENISRSXXX 182
R T T LN+ SSRSH+L +T+ + + L GKLNLVDLAGSE + +S
Sbjct: 191 TNRTTEFTNLNEHSSRSHALLIVTVRGVDCS---TGLRTTGKLNLVDLAGSERVGKSGAE 247
Query: 183 XXXXXXXXXINKSLLTLGRVINALVEHLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVSP 242
INKSL LG VI AL GH+P+R+SKLT LL+DSL G +KT ++ VSP
Sbjct: 248 GSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSP 307
Query: 243 AVHCLEETLSTLDYAHRAKNIK 264
ETL +L +A R ++++
Sbjct: 308 VEKNTSETLYSLKFAERVRSVE 329
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 136/254 (53%), Gaps = 26/254 (10%)
Query: 32 GVIPRAVQQIFDTLE---SQNAEYSVKVTFLELYNEEITDLLAPDEISRAAVEDKQKKQL 88
G+IP+ + +F + + N YSV+V+++E+Y E + DLL P K K L
Sbjct: 117 GIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNP----------KNKGNL 166
Query: 89 PLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIH 148
+ E G V L + VTS ++I L++ G+ R A T +N+ SSRSH++F+I
Sbjct: 167 RVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFT 226
Query: 149 IKEATPEGEELI-KCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALV 207
K E K K++LVDLAGSE + INKSL TLG+VI+AL
Sbjct: 227 QKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA 286
Query: 208 E------------HLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLD 255
E IPYRDS LT LLR++LGG ++T ++A +SPA +ETLSTL
Sbjct: 287 EMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLR 346
Query: 256 YAHRAKNIKNKPEV 269
YA RAK I+N V
Sbjct: 347 YADRAKQIRNTVSV 360
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 136/254 (53%), Gaps = 26/254 (10%)
Query: 32 GVIPRAVQQIFDTLE---SQNAEYSVKVTFLELYNEEITDLLAPDEISRAAVEDKQKKQL 88
G+IP+ + +F + + N YSV+V+++E+Y E + DLL P K K L
Sbjct: 117 GIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNP----------KNKGNL 166
Query: 89 PLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIH 148
+ E G V L + VTS ++I L++ G+ R A T +N+ SSRSH++F+I
Sbjct: 167 RVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFT 226
Query: 149 IKEATPEGEELI-KCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALV 207
K E K K++LVDLAGSE + INKSL TLG+VI+AL
Sbjct: 227 QKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA 286
Query: 208 E------------HLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLD 255
E IPYRDS LT LLR++LGG ++T ++A +SPA +ETLSTL
Sbjct: 287 EMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLR 346
Query: 256 YAHRAKNIKNKPEV 269
YA RAK I+N V
Sbjct: 347 YADRAKQIRNTVSV 360
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 136/254 (53%), Gaps = 26/254 (10%)
Query: 32 GVIPRAVQQIFDTLE---SQNAEYSVKVTFLELYNEEITDLLAPDEISRAAVEDKQKKQL 88
G+IP+ + +F + + N YSV+V+++E+Y E + DLL P K K L
Sbjct: 117 GIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNP----------KNKGNL 166
Query: 89 PLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIH 148
+ E G V L + VTS ++I L++ G+ R A T +N+ SSRSH++F+I
Sbjct: 167 RVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFT 226
Query: 149 IKEATPEGEELI-KCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALV 207
K E K K++LVDLAGSE + INKSL TLG+VI+AL
Sbjct: 227 QKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA 286
Query: 208 E------------HLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLD 255
E IPYRDS LT LLR++LGG ++T ++A +SPA +ETLSTL
Sbjct: 287 EMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLR 346
Query: 256 YAHRAKNIKNKPEV 269
YA RAK I+N V
Sbjct: 347 YADRAKQIRNTVSV 360
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 136/254 (53%), Gaps = 26/254 (10%)
Query: 32 GVIPRAVQQIFDTLE---SQNAEYSVKVTFLELYNEEITDLLAPDEISRAAVEDKQKKQL 88
G+IP+ + +F + + N YSV+V+++E+Y E + DLL P K K L
Sbjct: 133 GIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNP----------KNKGNL 182
Query: 89 PLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIH 148
+ E G V L + VTS ++I L++ G+ R A T +N+ SSRSH++F+I
Sbjct: 183 RVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFT 242
Query: 149 IKEATPEGEELI-KCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALV 207
K E K K++LVDLAGSE + INKSL TLG+VI+AL
Sbjct: 243 QKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA 302
Query: 208 E------------HLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLD 255
E IPYRDS LT LLR++LGG ++T ++A +SPA +ETLSTL
Sbjct: 303 EMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLR 362
Query: 256 YAHRAKNIKNKPEV 269
YA RAK I+N V
Sbjct: 363 YADRAKQIRNTVSV 376
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 145 bits (367), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 135/245 (55%), Gaps = 18/245 (7%)
Query: 28 PPEAGVIPRAVQQIFDTLESQNAE-----YSVKVTFLELYNEEITDLLAPDEISRAAVED 82
P + GVIPRA+ + + AE SV +++LE+Y E++ DLL D
Sbjct: 120 PEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLL-----------D 168
Query: 83 KQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSL 142
L + ED +G +L+ GL ++ ++S ++ S R T LN++SSRSH++
Sbjct: 169 PASGDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAV 228
Query: 143 FSITIHIKEATPEGEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRV 202
+ + +E + + GKL L+DLAGSE+ R+ IN SL LG+V
Sbjct: 229 LLVKVDQRERLAPFRQ--REGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKV 286
Query: 203 INALVEHLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKN 262
++AL + L +PYRDSKLTRLL+DSLGG + +IA ++P +T+S L++A R+K
Sbjct: 287 VDALNQGLPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKE 346
Query: 263 IKNKP 267
+ N+P
Sbjct: 347 VINRP 351
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 120/212 (56%), Gaps = 22/212 (10%)
Query: 54 VKVTFLELYNEEITDLLAPDEISRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASE 113
V VTF E+YN ++ DLL +K +L ++EDGK V V GL+E +V SA +
Sbjct: 191 VYVTFFEIYNGKLFDLL------------NKKAKLRVLEDGKQQVQVVGLQEHLVNSADD 238
Query: 114 IFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIKEATPEGEELIKCGKLNLVDLAGS 173
+ +++ GSA R + +T N SSRSH+ F I + K GK +LVDLAG+
Sbjct: 239 VIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGRMH--------GKFSLVDLAGN 290
Query: 174 E-NISRSXXXXXXXXXXXXINKSLLTLGRVINALVEHLGHIPYRDSKLTRLLRDS-LGGR 231
E S INKSLL L I AL ++ H P+R+SKLT++LRDS +G
Sbjct: 291 ERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGEN 350
Query: 232 TKTCIIATVSPAVHCLEETLSTLDYAHRAKNI 263
++TC+IAT+SP + E TL+TL YA R K +
Sbjct: 351 SRTCMIATISPGISSCEYTLNTLRYADRVKEL 382
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/263 (34%), Positives = 137/263 (52%), Gaps = 24/263 (9%)
Query: 10 GVNVQLCSMRQSGPNGE-----LPPEAGVIPRAVQQIFDTLESQ---NAEYSVKVTFLEL 61
G N+ + + QSG +P GVIPR V +FD++ EY +K TFLE+
Sbjct: 134 GYNICIFAYGQSGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEI 193
Query: 62 YNEEITDLLAPDEISRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERG 121
YNE + DLL+ +++ ++ + ++ K + V + EE V + + L+
Sbjct: 194 YNEVLYDLLS---------NEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTA 244
Query: 122 SAKRRTAETLLNKQSSRSHSLFSITIHIKEATPEGEELIKCGKLNLVDLAGSENISRSXX 181
R TA T N++SSRSH++ + + + A E +E I G +NLVDLAGSE S
Sbjct: 245 KMNRATASTAGNERSSRSHAVTKLELIGRHA--EKQE-ISVGSINLVDLAGSE----SPK 297
Query: 182 XXXXXXXXXXINKSLLTLGRVINALVEHLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVS 241
IN+SL L VI AL++ HIPYR+SKLT LL SLGG +KT + VS
Sbjct: 298 TSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVS 357
Query: 242 PAVHCLEETLSTLDYAHRAKNIK 264
P C +E++ +L +A + K
Sbjct: 358 PFQDCFQESVKSLRFAASVNSCK 380
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 135/256 (52%), Gaps = 24/256 (9%)
Query: 10 GVNVQLCSMRQSGPNGE-----LPPEAGVIPRAVQQIFDTLESQ---NAEYSVKVTFLEL 61
G N+ + + Q+G +P GVIPR V +FD++ EY +K TFLE+
Sbjct: 145 GYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEI 204
Query: 62 YNEEITDLLAPDEISRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERG 121
YNE + DLL+ +++ ++ + ++ K + V + EE V + + L+
Sbjct: 205 YNEVLYDLLS---------NEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTA 255
Query: 122 SAKRRTAETLLNKQSSRSHSLFSITIHIKEATPEGEELIKCGKLNLVDLAGSENISRSXX 181
R TA T N++SSRSH++ + + + A E +E I G +NLVDLAGSE S
Sbjct: 256 KMNRATASTAGNERSSRSHAVTKLELIGRHA--EKQE-ISVGSINLVDLAGSE----SPK 308
Query: 182 XXXXXXXXXXINKSLLTLGRVINALVEHLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVS 241
IN+SL L VI AL++ HIPYR+SKLT LL SLGG +KT + VS
Sbjct: 309 TSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVS 368
Query: 242 PAVHCLEETLSTLDYA 257
P C +E++ +L +A
Sbjct: 369 PFQDCFQESVKSLRFA 384
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 137/263 (52%), Gaps = 24/263 (9%)
Query: 10 GVNVQLCSMRQSGPNGE-----LPPEAGVIPRAVQQIFDTLESQ---NAEYSVKVTFLEL 61
G N+ + + Q+G +P GVIPR V +FD++ EY +K TFLE+
Sbjct: 137 GYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEI 196
Query: 62 YNEEITDLLAPDEISRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERG 121
YNE + DLL+ +++ ++ + ++ K + V + EE V + + L+
Sbjct: 197 YNEVLYDLLS---------NEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTA 247
Query: 122 SAKRRTAETLLNKQSSRSHSLFSITIHIKEATPEGEELIKCGKLNLVDLAGSENISRSXX 181
R TA T N++SSRSH++ + + + A E +E I G +NLVDLAGSE S
Sbjct: 248 KMNRATASTAGNERSSRSHAVTKLELIGRHA--EKQE-ISVGSINLVDLAGSE----SPK 300
Query: 182 XXXXXXXXXXINKSLLTLGRVINALVEHLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVS 241
IN+SL L VI AL++ HIPYR+SKLT LL SLGG +KT + VS
Sbjct: 301 TSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVS 360
Query: 242 PAVHCLEETLSTLDYAHRAKNIK 264
P C +E++ +L +A + K
Sbjct: 361 PFQDCFQESVKSLRFAASVNSCK 383
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 137/263 (52%), Gaps = 24/263 (9%)
Query: 10 GVNVQLCSMRQSGPNGE-----LPPEAGVIPRAVQQIFDTLESQ---NAEYSVKVTFLEL 61
G N+ + + Q+G +P GVIPR V +FD++ EY +K TFLE+
Sbjct: 131 GYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEI 190
Query: 62 YNEEITDLLAPDEISRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERG 121
YNE + DLL+ +++ ++ + ++ K + V + EE V + + L+
Sbjct: 191 YNEVLYDLLS---------NEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTA 241
Query: 122 SAKRRTAETLLNKQSSRSHSLFSITIHIKEATPEGEELIKCGKLNLVDLAGSENISRSXX 181
R TA T N++SSRSH++ + + + A E +E I G +NLVDLAGSE S
Sbjct: 242 KMNRATASTAGNERSSRSHAVTKLELIGRHA--EKQE-ISVGSINLVDLAGSE----SPK 294
Query: 182 XXXXXXXXXXINKSLLTLGRVINALVEHLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVS 241
IN+SL L VI AL++ HIPYR+SKLT LL SLGG +KT + VS
Sbjct: 295 TSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVS 354
Query: 242 PAVHCLEETLSTLDYAHRAKNIK 264
P C +E++ +L +A + K
Sbjct: 355 PFQDCFQESVKSLRFAASVNSCK 377
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/267 (34%), Positives = 138/267 (51%), Gaps = 27/267 (10%)
Query: 10 GVNVQLCSMRQSGPNGELP---PEAGVIPRAVQQIFDTLES---QNAEYSVKVTFLELYN 63
G NV + + Q+G P G+IP ++++IF+ +E + Y+V+ F+E+YN
Sbjct: 461 GTNVCVFAYGQTGSGKTFTMSHPTNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYN 520
Query: 64 EEITDLLAPDEISRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSA 123
E I DLL P E K +D G V + + S + T+L + +
Sbjct: 521 EAIVDLLNPKIDPNTKYEIKH-------DDIAGKTTVTNVSTIDIKSPEQAITILNQANK 573
Query: 124 KRRTAETLLNKQSSRSHSLFSITIH-----IKEATPEGEELIKCGKLNLVDLAGSENISR 178
KR TA T N SSRSHS+F I + KE++ G LNL+DLAGSE ++
Sbjct: 574 KRSTAATKSNDHSSRSHSIFIIDLQGYNSLTKESS--------YGTLNLIDLAGSERLNN 625
Query: 179 SXXXXXXXXXXXXINKSLLTLGRVINAL-VEHLGHIPYRDSKLTRLLRDSLGGRTKTCII 237
S INKSL LG VI++L ++ H+PYR+SKLT LL+ SLGG +KT +
Sbjct: 626 SRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMF 685
Query: 238 ATVSPAVHCLEETLSTLDYAHRAKNIK 264
+SP L ET+++L +A + N +
Sbjct: 686 VNISPLTKDLNETINSLRFATKVNNTR 712
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/238 (37%), Positives = 128/238 (53%), Gaps = 27/238 (11%)
Query: 32 GVIPRAVQQIFDTLESQ----NAEYSVKVTFLELYNEEITDLLAPDEISRAAVEDKQKKQ 87
G+ A + +F L++Q N V VTF E+YN ++ DLL +K +
Sbjct: 186 GIYAMASRDVF-LLKNQPRYRNLNLEVYVTFFEIYNGKVFDLL------------NKKAK 232
Query: 88 LPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITI 147
L ++ED + V V GL+E +VT A ++ ++ GSA R + +T N SSRSH+ F I +
Sbjct: 233 LRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILL 292
Query: 148 HIKEATPEGEELIKCGKLNLVDLAGSE-NISRSXXXXXXXXXXXXINKSLLTLGRVINAL 206
K GK +LVDLAG+E S INKSLL L I AL
Sbjct: 293 RTKGRLH--------GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRAL 344
Query: 207 VEHLGHIPYRDSKLTRLLRDS-LGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKNI 263
++ H P+R+SKLT++LRDS +G ++TC+IA +SP + E TL+TL YA R K +
Sbjct: 345 GQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 402
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 136 bits (342), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 89/238 (37%), Positives = 128/238 (53%), Gaps = 27/238 (11%)
Query: 32 GVIPRAVQQIFDTLESQ----NAEYSVKVTFLELYNEEITDLLAPDEISRAAVEDKQKKQ 87
G+ A + +F L++Q N V VTF E+YN ++ DLL +K +
Sbjct: 114 GIYAMASRDVF-LLKNQPRYRNLNLEVYVTFFEIYNGKVFDLL------------NKKAK 160
Query: 88 LPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITI 147
L ++ED + V V GL+E +VT A ++ ++ GSA R + +T N SSRSH+ F I +
Sbjct: 161 LRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILL 220
Query: 148 HIKEATPEGEELIKCGKLNLVDLAGSE-NISRSXXXXXXXXXXXXINKSLLTLGRVINAL 206
K GK +LVDLAG+E S INKSLL L I AL
Sbjct: 221 RTKGRLH--------GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRAL 272
Query: 207 VEHLGHIPYRDSKLTRLLRDS-LGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKNI 263
++ H P+R+SKLT++LRDS +G ++TC+IA +SP + E TL+TL YA R K +
Sbjct: 273 GQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 330
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 135 bits (340), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/263 (34%), Positives = 136/263 (51%), Gaps = 24/263 (9%)
Query: 10 GVNVQLCSMRQSGPNGE-----LPPEAGVIPRAVQQIFDTLESQ---NAEYSVKVTFLEL 61
G N+ + + Q+G +P GVIPR V +FD++ EY +K TFLE+
Sbjct: 134 GYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEI 193
Query: 62 YNEEITDLLAPDEISRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERG 121
YNE + DLL+ +++ ++ + ++ K + V + EE V + + L+
Sbjct: 194 YNEVLYDLLS---------NEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTA 244
Query: 122 SAKRRTAETLLNKQSSRSHSLFSITIHIKEATPEGEELIKCGKLNLVDLAGSENISRSXX 181
R TA T N++SSRSH++ + + + A E +E I G +NLVDLAGSE S
Sbjct: 245 KMNRATASTAGNERSSRSHAVTKLELIGRHA--EKQE-ISVGSINLVDLAGSE----SPK 297
Query: 182 XXXXXXXXXXINKSLLTLGRVINALVEHLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVS 241
I +SL L VI AL++ HIPYR+SKLT LL SLGG +KT + VS
Sbjct: 298 TSTRMTETKNIKRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVS 357
Query: 242 PAVHCLEETLSTLDYAHRAKNIK 264
P C +E++ +L +A + K
Sbjct: 358 PFQDCFQESVKSLRFAASVNSCK 380
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 133 bits (334), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 87/238 (36%), Positives = 123/238 (51%), Gaps = 21/238 (8%)
Query: 32 GVIPRAVQQIFDTLESQNAE-YSVKVTFLELYNEEITDLL------APDEISRAAVEDKQ 84
G++PRA+QQ+F +E + +V+V++LE+YNE + DLL P VE+ Q
Sbjct: 133 GILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVENPQ 192
Query: 85 KKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFS 144
GV ++GL + + + F+LL G R A +NK SSRSH +F+
Sbjct: 193 ------------GVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFT 240
Query: 145 ITIHIKEATPEGEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVIN 204
I + T E+ I K+NLVDLAGSE + +S INKSL L + I
Sbjct: 241 IYLEAHSRTLSEEKYITS-KINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAII 299
Query: 205 ALVEH-LGHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAK 261
AL + HIP+R KLT L+DSLGG ++ + LEETLS+L +A R K
Sbjct: 300 ALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMK 357
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 95/265 (35%), Positives = 135/265 (50%), Gaps = 13/265 (4%)
Query: 10 GVNVQLCSMRQSGPNGE---LPPEAGVIPRAVQQIF---DTLESQNAEYSVKVTFLELYN 63
G NV + + Q+G L P G++P + IF D L ++ Y V F+E+YN
Sbjct: 105 GYNVCIFAYGQTGSGKTYTMLNPGDGIVPATINHIFSWIDKLAARGWSYKVSCEFIEIYN 164
Query: 64 EEITDLLAPDEISRAAVEDKQKKQLPLMEDGK-GGVLVRGLEEEIVTSASEIFTLLERGS 122
E I DLL S+ + + + D + + + ++ S + +L+R +
Sbjct: 165 ENIVDLLRSGAPSQENNDRNADSKHEIRHDQELKTTYITNITTCVLDSRDTVDKVLKRAN 224
Query: 123 AKRRTAETLLNKQSSRSHSLFSITIHIKEATPEGEELIKCGKLNLVDLAGSENISRSXXX 182
R TA T N+ SSRSHS+F IH+ E EG G LNLVDLAGSE ++ S
Sbjct: 225 KLRSTASTAANEHSSRSHSIF--IIHL-EGKNEGTGEKSQGILNLVDLAGSERLNSSMVV 281
Query: 183 XXXXXXXXXINKSLLTLGRVINALVEHLG---HIPYRDSKLTRLLRDSLGGRTKTCIIAT 239
INKSL LG VI+AL G HIP+R+SKLT LL+ SL G +KT +
Sbjct: 282 GERLRETQSINKSLSCLGDVIHALNSPDGQKRHIPFRNSKLTYLLQYSLIGSSKTLMFVN 341
Query: 240 VSPAVHCLEETLSTLDYAHRAKNIK 264
+SPA L ET+++L +A + N K
Sbjct: 342 ISPAALHLNETINSLRFASKVNNTK 366
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 129 bits (325), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 126/237 (53%), Gaps = 25/237 (10%)
Query: 32 GVIPRAVQQIFDTLESQN---AEYSVKVTFLELYNEEITDLLAPDEISRAAVEDKQKKQL 88
G+ A + +F L+ N E V TF E+Y+ ++ DLL +K +L
Sbjct: 204 GIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLL------------NRKTKL 251
Query: 89 PLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIH 148
++EDGK V V GL+E V ++ L++ G++ R + +T N SSRSH++F I +
Sbjct: 252 RVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILR 311
Query: 149 IKEATPEGEELIKCGKLNLVDLAGSE-NISRSXXXXXXXXXXXXINKSLLTLGRVINALV 207
K GK +L+DLAG+E S INKSLL L I AL
Sbjct: 312 RKGKLH--------GKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALG 363
Query: 208 EHLGHIPYRDSKLTRLLRDS-LGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKNI 263
+ H P+R SKLT++LRDS +G ++TC+IAT+SP + E TL+TL YA+R K +
Sbjct: 364 RNKPHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKEL 420
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 122 bits (307), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 89/261 (34%), Positives = 131/261 (50%), Gaps = 15/261 (5%)
Query: 10 GVNVQLCSMRQSGPNGE---LPPEAGVIPRAVQQIFD---TLESQNAEYSVKVTFLELYN 63
G NV + + Q+G L P G+IP + IF+ L+++ +Y V F+E+YN
Sbjct: 139 GYNVAIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYN 198
Query: 64 EEITDLLAPDEISRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIF-TLLERGS 122
E I DLL D ++ K ++ D + + + E+ +L++ +
Sbjct: 199 ENIVDLLRSDNNNKEDTSIGLKHEI--RHDQETKTTTITNVTSVKLESEEMVEIILKKAN 256
Query: 123 AKRRTAETLLNKQSSRSHSLFSITIHIKEATPEGEELIKCGKLNLVDLAGSENISRSXXX 182
R TA T N+ SSRSHS+F I + A G LNLVDLAGSE I+ S
Sbjct: 257 KLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHS---YGTLNLVDLAGSERINVSQVV 313
Query: 183 XXXXXXXXXINKSLLTLGRVINALVEHLG---HIPYRDSKLTRLLRDSLGGRTKTCIIAT 239
INKSL LG VI+AL + HIP+R+SKLT LL+ SL G +KT +
Sbjct: 314 GDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVN 373
Query: 240 VSPAVHCLEETLSTLDYAHRA 260
+SP+ + ETL++L +A +
Sbjct: 374 ISPSSSHINETLNSLRFASKV 394
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/269 (35%), Positives = 142/269 (52%), Gaps = 21/269 (7%)
Query: 10 GVNVQLCSMRQSGPNGE---LPPEAGVIPRAVQQIFD---TLESQNAEYSVKVTFLELYN 63
G NV + + Q+G L G+IP + IF L+ + Y ++ ++E+YN
Sbjct: 84 GYNVCIFAYGQTGSGKTYTMLNAGDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYN 143
Query: 64 EEITDLL----APDEISRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLE 119
E I DLL + D I + D QK + + K G + + +TS S++ T+L+
Sbjct: 144 ETILDLLRDFKSHDNIDE--ILDSQKHDIR-HDHEKQGTYITNVTRMKMTSTSQVDTILK 200
Query: 120 RGSAKRRTAETLLNKQSSRSHSLFSITIHIKEA-TPEGEELIKCGKLNLVDLAGSENISR 178
+ S R TA T N++SSRSHS+F + I+ + T E + GKLNLVDLAGSE I+
Sbjct: 201 KASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTGETSQ----GKLNLVDLAGSERINS 256
Query: 179 SXXXXXXXXXXXXINKSLLTLGRVINAL-VEHLG--HIPYRDSKLTRLLRDSLGGRTKTC 235
S INKSL LG VI AL G +IP+R+SKLT LL+ SL G +KT
Sbjct: 257 SAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTL 316
Query: 236 IIATVSPAVHCLEETLSTLDYAHRAKNIK 264
+ + P + + ETL++L +A + + K
Sbjct: 317 MFVNIPPDPNHISETLNSLRFASKVNSTK 345
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 119 bits (299), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 89/261 (34%), Positives = 130/261 (49%), Gaps = 15/261 (5%)
Query: 10 GVNVQLCSMRQSGPNGE---LPPEAGVIPRAVQQIFDT---LESQNAEYSVKVTFLELYN 63
G NV + + Q+G L P G+IP + IF+ L+++ +Y V F+E+YN
Sbjct: 82 GYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYN 141
Query: 64 EEITDLLAPDEISRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIF-TLLERGS 122
E I DLL D ++ K ++ D + + E+ +L++ +
Sbjct: 142 ENIVDLLRSDNNNKEDTSIGLKHEI--RHDQETKTTTITNVTSCKLESEEMVEIILKKAN 199
Query: 123 AKRRTAETLLNKQSSRSHSLFSITIHIKEATPEGEELIKCGKLNLVDLAGSENISRSXXX 182
R TA T N+ SSRSHS+F I + A G LNLVDLAGSE I+ S
Sbjct: 200 KLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSY---GTLNLVDLAGSERINVSQVV 256
Query: 183 XXXXXXXXXINKSLLTLGRVINALVEHLG---HIPYRDSKLTRLLRDSLGGRTKTCIIAT 239
INKSL LG VI+AL + HIP+R+SKLT LL+ SL G +KT +
Sbjct: 257 GDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVN 316
Query: 240 VSPAVHCLEETLSTLDYAHRA 260
+SP+ + ETL++L +A +
Sbjct: 317 ISPSSSHINETLNSLRFASKV 337
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 119 bits (299), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 132/265 (49%), Gaps = 15/265 (5%)
Query: 10 GVNVQLCSMRQSGPNGE---LPPEAGVIPRAVQQIFDT---LESQNAEYSVKVTFLELYN 63
G NV + + Q+G L P G+IP + IF+ L+++ +Y V F+E+YN
Sbjct: 94 GYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYN 153
Query: 64 EEITDLLAPDEISRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIF-TLLERGS 122
E I DLL D ++ K ++ D + + E+ +L++ +
Sbjct: 154 ENIVDLLRSDNNNKEDTSIGLKHEI--RHDQETKTTTITNVTSCKLESEEMVEIILKKAN 211
Query: 123 AKRRTAETLLNKQSSRSHSLFSITIHIKEATPEGEELIKCGKLNLVDLAGSENISRSXXX 182
R TA T N+ SSRSHS+F I + A G LNLVDLAGSE I+ S
Sbjct: 212 KLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSY---GTLNLVDLAGSERINVSQVV 268
Query: 183 XXXXXXXXXINKSLLTLGRVINALVEHLG---HIPYRDSKLTRLLRDSLGGRTKTCIIAT 239
INKSL LG VI+AL + HIP+R+SKLT LL+ SL G +KT +
Sbjct: 269 GDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVN 328
Query: 240 VSPAVHCLEETLSTLDYAHRAKNIK 264
+SP+ + ETL++L +A + + +
Sbjct: 329 ISPSSSHINETLNSLRFASKVNSTR 353
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 129/261 (49%), Gaps = 15/261 (5%)
Query: 10 GVNVQLCSMRQSGPNGE---LPPEAGVIPRAVQQIFDT---LESQNAEYSVKVTFLELYN 63
G NV + + Q+G L P G+IP + IF+ L+++ +Y V F+E+YN
Sbjct: 83 GYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYN 142
Query: 64 EEITDLLAPDEISRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIF-TLLERGS 122
E I DLL D ++ K ++ D + + E+ +L++ +
Sbjct: 143 ENIVDLLRSDNNNKEDTSIGLKHEI--RHDQETKTTTITNVTSCKLESEEMVEIILKKAN 200
Query: 123 AKRRTAETLLNKQSSRSHSLFSITIHIKEATPEGEELIKCGKLNLVDLAGSENISRSXXX 182
R TA T N+ SSRSHS+F I + A G LNLVDLAGS I+ S
Sbjct: 201 KLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSY---GTLNLVDLAGSARINVSQVV 257
Query: 183 XXXXXXXXXINKSLLTLGRVINALVEHLG---HIPYRDSKLTRLLRDSLGGRTKTCIIAT 239
INKSL LG VI+AL + HIP+R+SKLT LL+ SL G +KT +
Sbjct: 258 GDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVN 317
Query: 240 VSPAVHCLEETLSTLDYAHRA 260
+SP+ + ETL++L +A +
Sbjct: 318 ISPSSSHINETLNSLRFASKV 338
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 129/261 (49%), Gaps = 15/261 (5%)
Query: 10 GVNVQLCSMRQSGPNGE---LPPEAGVIPRAVQQIFDT---LESQNAEYSVKVTFLELYN 63
G NV + + Q+G L P G+IP + IF+ L+++ +Y V F+E+YN
Sbjct: 83 GYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYN 142
Query: 64 EEITDLLAPDEISRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIF-TLLERGS 122
E I DLL D ++ K ++ D + + E+ +L++ +
Sbjct: 143 ENIVDLLRSDNNNKEDTSIGLKHEI--RHDQETKTTTITNVTSCKLESEEMVEIILKKAN 200
Query: 123 AKRRTAETLLNKQSSRSHSLFSITIHIKEATPEGEELIKCGKLNLVDLAGSENISRSXXX 182
R TA T N+ SSRSHS+F I + A G LNLVDLAGSE I+ S
Sbjct: 201 KLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSY---GTLNLVDLAGSERINVSQVV 257
Query: 183 XXXXXXXXXINKSLLTLGRVINALVEHLG---HIPYRDSKLTRLLRDSLGGRTKTCIIAT 239
I KSL LG VI+AL + HIP+R+SKLT LL+ SL G +KT +
Sbjct: 258 GDRLRETQNIKKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVN 317
Query: 240 VSPAVHCLEETLSTLDYAHRA 260
+SP+ + ETL++L +A +
Sbjct: 318 ISPSSSHINETLNSLRFASKV 338
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 129/261 (49%), Gaps = 15/261 (5%)
Query: 10 GVNVQLCSMRQSGPNGE---LPPEAGVIPRAVQQIFDT---LESQNAEYSVKVTFLELYN 63
G NV + + Q+G L P G+IP + IF+ L+++ +Y V F+E+YN
Sbjct: 83 GYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYN 142
Query: 64 EEITDLLAPDEISRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIF-TLLERGS 122
E I DLL D ++ K ++ D + + E+ +L++ +
Sbjct: 143 ENIVDLLRSDNNNKEDTSIGLKHEI--RHDQETKTTTITNVTSCKLESEEMVEIILKKAN 200
Query: 123 AKRRTAETLLNKQSSRSHSLFSITIHIKEATPEGEELIKCGKLNLVDLAGSENISRSXXX 182
R TA T N+ SS SHS+F I + A G LNLVDLAGSE I+ S
Sbjct: 201 KLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHSY---GTLNLVDLAGSERINVSQVV 257
Query: 183 XXXXXXXXXINKSLLTLGRVINALVEHLG---HIPYRDSKLTRLLRDSLGGRTKTCIIAT 239
INKSL LG VI+AL + HIP+R+SKLT LL+ SL G +KT +
Sbjct: 258 GDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVN 317
Query: 240 VSPAVHCLEETLSTLDYAHRA 260
+SP+ + ETL++L +A +
Sbjct: 318 ISPSSSHINETLNSLRFASKV 338
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 115 bits (289), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 88/256 (34%), Positives = 127/256 (49%), Gaps = 33/256 (12%)
Query: 20 QSGPNGELPPEAGVIPRAVQQIFDT---LESQNAEYSVKVTFLELYNEEITDLLAPDEIS 76
+ GP G+ P G+IPRA++ +F L Q YS +++E+YNE + DLLA
Sbjct: 134 EGGPGGD-PQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLA----- 187
Query: 77 RAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSA--------SEIFTLLERGSAKRRTA 128
Q + + G G EE VT+A E+ LL R A
Sbjct: 188 -TGTRKGQGGECEIRRAGPGS------EELTVTNARYVPVSCEKEVDALLHLARQNRAVA 240
Query: 129 ETLLNKQSSRSHSLFSITIHIKEATPEGEELIKCG-KLNLVDLAGSE----NISRSXXXX 183
T N++SSRSHS+F + I + ++ ++CG L+LVDLAGSE ++
Sbjct: 241 RTAQNERSSRSHSVFQLQISGEHSS----RGLQCGAPLSLVDLAGSERLDPGLALGPGER 296
Query: 184 XXXXXXXXINKSLLTLGRVINALVEHLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPA 243
IN SL TLG VI AL H+PYR+SKLT LL++SLGG K + +SP
Sbjct: 297 ERLRETQAINSSLSTLGLVIMALSNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPL 356
Query: 244 VHCLEETLSTLDYAHR 259
+ E+L++L +A +
Sbjct: 357 EENVSESLNSLRFASK 372
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 130/255 (50%), Gaps = 36/255 (14%)
Query: 17 SMRQSGPNGELPPEAGVIPRAVQQIFD--TLESQNAEYSVKV--TFLELYNEEITDLLAP 72
SM + P LP G++PRA+ IF+ T +N + +++V +F+E+YNE+ DLL
Sbjct: 111 SMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGS 170
Query: 73 -DEISRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETL 131
+ A ++ LPL S +++ +LE G+ RR T
Sbjct: 171 TPHMPMVAARCQRCTCLPLH------------------SQADLHHILELGTRNRRVRPTN 212
Query: 132 LNKQSSRSHSLFSITIHIKEATPEGEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXX 191
+N SSRSH++ +TIH+K T ++N+VDLAGSE + R+
Sbjct: 213 MNSNSSRSHAI--VTIHVKSKTHHS-------RMNIVDLAGSEGVRRTGHEGVARQEGVN 263
Query: 192 INKSLLTLGRVINALVEHLGH--IPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEE 249
IN LL++ +V+ ++ GH IPYRDS LT +L+ SL ++ +A +SP L E
Sbjct: 264 INLGLLSINKVVMSMAA--GHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSE 321
Query: 250 TLSTLDYAHRAKNIK 264
TLSTL + AK ++
Sbjct: 322 TLSTLRFGTSAKKLR 336
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 83/252 (32%), Positives = 128/252 (50%), Gaps = 36/252 (14%)
Query: 17 SMRQSGPNGELPPEAGVIPRAVQQIFD--TLESQNAEYSVKV--TFLELYNEEITDLLAP 72
SM + P LP G++PRA+ IF+ T +N + +++V +F+E+YNE+ DLL
Sbjct: 111 SMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGS 170
Query: 73 -DEISRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETL 131
+ A ++ LPL S +++ +LE G+ RR T
Sbjct: 171 TPHMPMVAARCQRCTCLPLH------------------SQADLHHILELGTRNRRVRPTN 212
Query: 132 LNKQSSRSHSLFSITIHIKEATPEGEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXX 191
+N SSRSH++ +TIH+K T ++N+VDLAGSE + R+
Sbjct: 213 MNSNSSRSHAI--VTIHVKSKTHHS-------RMNIVDLAGSEGVRRTGHEGVARQEGVN 263
Query: 192 INKSLLTLGRVINALVEHLGH--IPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEE 249
IN LL++ +V+ ++ GH IPYRDS LT +L+ SL ++ +A +SP L E
Sbjct: 264 INLGLLSINKVVMSMAA--GHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSE 321
Query: 250 TLSTLDYAHRAK 261
TLSTL + AK
Sbjct: 322 TLSTLRFGTSAK 333
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 129/253 (50%), Gaps = 24/253 (9%)
Query: 17 SMRQSGPNGELPPEAGVIPRAVQQIFDTLESQNAEYS--VKVTFLELYNEEITDLLAPDE 74
+M S P G+ G+ A IF L + + + + ++F E+Y ++ DLL
Sbjct: 101 TMLGSQPYGQ-SDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLL---- 155
Query: 75 ISRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNK 134
+++K + +E+GK V+V+ L+ V + E+ + G R+ N
Sbjct: 156 --------QKRKMVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQND 207
Query: 135 QSSRSHSLFSITIH-IKEATPEGEELIKCGKLNLVDLAGSENISRSXXXXXXXXX-XXXI 192
+SSRSH++ +I + I + T GK+ +DLAGSE + + I
Sbjct: 208 ESSRSHAILNIDLKDINKNT-------SLGKIAFIDLAGSERGADTVSQNKQTQTDGANI 260
Query: 193 NKSLLTLGRVINALVEHLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLS 252
N+SLL L I A+ HIP+RDS+LT++LRD G++K+ +IA +SP + C E+TL+
Sbjct: 261 NRSLLALKECIRAMDSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLN 320
Query: 253 TLDYAHRAKNIKN 265
TL Y+ R KN N
Sbjct: 321 TLRYSSRVKNKGN 333
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 92.8 bits (229), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 84/151 (55%), Gaps = 16/151 (10%)
Query: 28 PPEAGVIPRAVQQIFDTLES--QNAEYSVKVTFLELYNEEITDLLAPDEISRAAVEDKQK 85
P G+IPR IFD + S +N E+ +KV++ E+Y ++I DLL D K
Sbjct: 102 PQLMGIIPRIAHDIFDHIYSMDENLEFHIKVSYFEIYLDKIRDLL-----------DVSK 150
Query: 86 KQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSI 145
L + ED V+G E V+S E+ +++ G A R A T +N+ SSRSHS+F
Sbjct: 151 TNLAVHEDKNRVPYVKGCTERFVSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIF-- 208
Query: 146 TIHIKEATPEGEELIKCGKLNLVDLAGSENI 176
I+IK+ E E+ + GKL LVDLAGSE +
Sbjct: 209 LINIKQENVETEKKLS-GKLYLVDLAGSEKV 238
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 193 NKSLLTLGRVINALVEHL-GHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETL 251
NKSL LG VI+AL E H+PYRDSK+TR+L+DSLGG +T I+ SP+V ET
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 252 STLDYAHRAKNIKNKPEV 269
STL + RAK IKN V
Sbjct: 61 STLMFGQRAKTIKNTVSV 78
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 192 INKSLLTLGRVINALVEHL-GHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEET 250
INKSL LG VI+AL E H+PYRDSK+TR+L+DSL G +T I+ SP+V ET
Sbjct: 4 INKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAET 63
Query: 251 LSTLDYAHRAKNIKNKPEV 269
STL + RAK IKN V
Sbjct: 64 KSTLMFGQRAKTIKNTVSV 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.126 0.341
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,394,116
Number of Sequences: 62578
Number of extensions: 752868
Number of successful extensions: 1679
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1455
Number of HSP's gapped (non-prelim): 74
length of query: 815
length of database: 14,973,337
effective HSP length: 107
effective length of query: 708
effective length of database: 8,277,491
effective search space: 5860463628
effective search space used: 5860463628
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)