Query 003495
Match_columns 815
No_of_seqs 356 out of 1679
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 00:31:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003495.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003495hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0243 Kinesin-like protein [ 100.0 1E-129 2E-134 1144.1 63.9 808 4-815 121-1040(1041)
2 KOG0245 Kinesin-like protein [ 100.0 2E-71 4.4E-76 641.2 19.1 259 4-272 80-357 (1221)
3 KOG4280 Kinesin-like protein [ 100.0 3.2E-71 6.8E-76 628.4 18.5 259 4-272 78-345 (574)
4 KOG0240 Kinesin (SMY1 subfamil 100.0 2E-66 4.4E-71 575.6 38.7 255 4-272 75-340 (607)
5 PLN03188 kinesin-12 family pro 100.0 2.6E-64 5.7E-69 597.4 27.5 258 4-272 158-443 (1320)
6 KOG0242 Kinesin-like protein [ 100.0 8.3E-64 1.8E-68 586.4 21.5 254 4-272 79-340 (675)
7 cd01370 KISc_KIP3_like Kinesin 100.0 6.5E-63 1.4E-67 542.5 24.5 249 4-263 80-338 (338)
8 cd01373 KISc_KLP2_like Kinesin 100.0 1.2E-62 2.6E-67 540.2 25.0 248 4-263 67-337 (337)
9 cd01364 KISc_BimC_Eg5 Kinesin 100.0 1.2E-61 2.7E-66 535.0 25.6 260 4-271 74-351 (352)
10 KOG0241 Kinesin-like protein [ 100.0 8.3E-62 1.8E-66 551.3 21.8 260 4-272 86-360 (1714)
11 cd01368 KISc_KIF23_like Kinesi 100.0 2.3E-61 4.9E-66 531.7 24.5 249 4-261 81-345 (345)
12 cd01365 KISc_KIF1A_KIF1B Kines 100.0 1.9E-60 4.1E-65 526.4 25.7 259 4-270 81-356 (356)
13 cd01371 KISc_KIF3 Kinesin moto 100.0 2.6E-59 5.7E-64 513.0 26.1 250 4-263 74-333 (333)
14 cd01367 KISc_KIF2_like Kinesin 100.0 2.1E-59 4.5E-64 511.7 23.7 240 4-261 77-322 (322)
15 cd01376 KISc_KID_like Kinesin 100.0 3.3E-59 7.2E-64 509.4 24.4 242 4-261 73-319 (319)
16 cd01375 KISc_KIF9_like Kinesin 100.0 1.8E-58 3.8E-63 506.7 24.9 252 4-261 73-334 (334)
17 cd01374 KISc_CENP_E Kinesin mo 100.0 2.2E-58 4.7E-63 503.2 24.9 248 4-263 66-321 (321)
18 cd01372 KISc_KIF4 Kinesin moto 100.0 2.9E-58 6.2E-63 506.0 25.3 253 4-264 66-341 (341)
19 cd01369 KISc_KHC_KIF5 Kinesin 100.0 7.1E-58 1.5E-62 499.9 25.2 246 4-263 69-325 (325)
20 cd01366 KISc_C_terminal Kinesi 100.0 3.5E-57 7.6E-62 495.1 25.7 252 4-266 70-329 (329)
21 PF00225 Kinesin: Kinesin moto 100.0 9.1E-57 2E-61 492.2 19.5 253 4-263 67-335 (335)
22 KOG0244 Kinesin-like protein [ 100.0 6.2E-54 1.3E-58 498.5 42.8 255 5-271 59-325 (913)
23 KOG0239 Kinesin (KAR3 subfamil 100.0 4.6E-57 1E-61 528.0 16.7 253 4-268 385-645 (670)
24 smart00129 KISc Kinesin motor, 100.0 2.2E-55 4.7E-60 481.7 25.7 254 4-269 72-334 (335)
25 KOG0247 Kinesin-like protein [ 100.0 7.6E-54 1.6E-58 485.3 29.5 258 5-269 108-442 (809)
26 cd00106 KISc Kinesin motor dom 100.0 6.9E-54 1.5E-58 468.2 25.8 248 4-261 71-328 (328)
27 COG5059 KIP1 Kinesin-like prot 100.0 9.8E-51 2.1E-55 471.5 29.5 255 4-272 82-345 (568)
28 KOG0246 Kinesin-like protein [ 100.0 7.3E-51 1.6E-55 450.2 21.3 242 7-266 287-544 (676)
29 cd01363 Motor_domain Myosin an 100.0 4.9E-42 1.1E-46 347.2 14.6 166 4-242 16-186 (186)
30 PF13931 Microtub_bind: Kinesi 98.6 1.6E-08 3.4E-13 98.1 3.4 41 749-793 2-42 (143)
31 KOG0243 Kinesin-like protein [ 98.6 0.0067 1.4E-07 74.9 54.2 213 560-791 726-954 (1041)
32 KOG0161 Myosin class II heavy 96.9 3 6.4E-05 56.1 52.1 56 591-646 1353-1408(1930)
33 PF12128 DUF3584: Protein of u 95.6 12 0.00025 49.1 45.3 25 33-57 118-142 (1201)
34 KOG0994 Extracellular matrix g 95.3 13 0.00027 47.4 44.8 91 642-741 1658-1751(1758)
35 KOG0994 Extracellular matrix g 93.9 25 0.00055 44.9 36.8 108 459-582 1530-1645(1758)
36 COG5059 KIP1 Kinesin-like prot 93.4 0.00091 2E-08 79.5 -11.7 176 15-207 385-566 (568)
37 PF06705 SF-assemblin: SF-asse 93.2 14 0.0003 39.5 32.7 147 410-563 70-223 (247)
38 PF12128 DUF3584: Protein of u 92.5 45 0.00099 43.8 56.0 41 555-602 517-557 (1201)
39 PF01442 Apolipoprotein: Apoli 91.9 14 0.00031 36.6 25.4 17 428-444 103-119 (202)
40 KOG0161 Myosin class II heavy 91.8 65 0.0014 44.1 55.3 54 694-747 1348-1401(1930)
41 PF14643 DUF4455: Domain of un 91.6 34 0.00073 40.3 45.3 85 659-743 311-395 (473)
42 PF01442 Apolipoprotein: Apoli 90.0 21 0.00046 35.3 24.5 33 548-580 140-172 (202)
43 PF00038 Filament: Intermediat 89.9 34 0.00074 37.5 37.1 15 371-385 4-18 (312)
44 TIGR00606 rad50 rad50. This fa 88.8 97 0.0021 41.2 53.6 14 13-26 29-42 (1311)
45 PF06705 SF-assemblin: SF-asse 88.5 38 0.00083 36.2 31.3 211 497-725 34-244 (247)
46 KOG0250 DNA repair protein RAD 88.3 89 0.0019 40.1 31.7 35 450-484 354-388 (1074)
47 KOG0612 Rho-associated, coiled 87.6 1E+02 0.0022 40.1 42.6 30 551-582 669-698 (1317)
48 PF09403 FadA: Adhesion protei 87.6 25 0.00053 34.3 14.7 69 390-475 53-121 (126)
49 KOG0977 Nuclear envelope prote 86.4 82 0.0018 37.8 34.7 66 424-489 69-134 (546)
50 PF05667 DUF812: Protein of un 85.3 98 0.0021 37.7 32.7 58 460-518 518-575 (594)
51 KOG4302 Microtubule-associated 85.1 1E+02 0.0023 37.8 26.6 32 389-420 160-191 (660)
52 TIGR00606 rad50 rad50. This fa 82.5 1.9E+02 0.004 38.7 57.3 41 449-489 496-536 (1311)
53 PRK11637 AmiB activator; Provi 82.1 1.1E+02 0.0023 35.6 28.1 22 456-477 207-228 (428)
54 PF00038 Filament: Intermediat 81.6 88 0.0019 34.3 35.2 9 561-569 167-175 (312)
55 PF07464 ApoLp-III: Apolipopho 80.8 7.3 0.00016 39.2 8.2 21 448-468 126-146 (155)
56 PRK11637 AmiB activator; Provi 80.1 1.2E+02 0.0027 35.0 31.6 8 541-548 244-251 (428)
57 PF04108 APG17: Autophagy prot 79.8 1.3E+02 0.0027 35.0 44.3 100 627-761 307-406 (412)
58 PF00261 Tropomyosin: Tropomyo 79.2 93 0.002 33.1 27.0 105 386-491 89-199 (237)
59 COG1196 Smc Chromosome segrega 79.1 2.2E+02 0.0048 37.4 43.5 290 452-754 728-1031(1163)
60 KOG1029 Endocytic adaptor prot 78.3 1.9E+02 0.0041 36.1 31.0 30 734-764 732-761 (1118)
61 PRK04778 septation ring format 76.1 1.9E+02 0.0041 35.0 49.9 39 630-669 447-485 (569)
62 PF09325 Vps5: Vps5 C terminal 74.5 1.1E+02 0.0025 31.7 23.5 52 562-613 162-213 (236)
63 PRK02224 chromosome segregatio 74.0 2.5E+02 0.0054 35.5 53.7 11 16-26 27-37 (880)
64 PRK09039 hypothetical protein; 73.3 1.7E+02 0.0037 33.2 23.0 49 452-503 156-204 (343)
65 COG1196 Smc Chromosome segrega 72.8 3.2E+02 0.0068 36.1 47.5 30 456-485 809-838 (1163)
66 PF10498 IFT57: Intra-flagella 71.1 1.1E+02 0.0023 35.1 15.0 53 368-420 238-290 (359)
67 PF01576 Myosin_tail_1: Myosin 70.2 1.4 3.1E-05 55.3 0.0 65 575-646 286-350 (859)
68 KOG0995 Centromere-associated 69.8 2.6E+02 0.0056 33.8 32.8 52 465-516 514-565 (581)
69 cd07664 BAR_SNX2 The Bin/Amphi 68.8 1.7E+02 0.0037 31.4 24.9 41 562-602 158-198 (234)
70 PRK10361 DNA recombination pro 68.5 2.6E+02 0.0055 33.3 18.6 20 523-542 260-279 (475)
71 KOG0933 Structural maintenance 68.3 3.5E+02 0.0077 34.9 31.6 92 392-485 346-437 (1174)
72 KOG4673 Transcription factor T 67.5 3.1E+02 0.0067 33.9 48.0 36 707-742 739-774 (961)
73 PF12325 TMF_TATA_bd: TATA ele 67.0 1.3E+02 0.0027 29.2 14.4 32 381-412 88-119 (120)
74 PF09726 Macoilin: Transmembra 66.6 3.3E+02 0.0072 33.9 25.9 40 441-481 616-656 (697)
75 PF09602 PhaP_Bmeg: Polyhydrox 64.6 1.7E+02 0.0037 29.9 20.5 39 441-479 64-103 (165)
76 KOG0946 ER-Golgi vesicle-tethe 63.9 3.9E+02 0.0084 33.7 24.2 37 456-492 801-837 (970)
77 KOG3091 Nuclear pore complex, 63.8 3.1E+02 0.0068 32.6 16.9 113 456-576 336-448 (508)
78 PRK04863 mukB cell division pr 62.7 5.5E+02 0.012 35.0 44.3 13 14-26 29-41 (1486)
79 PF15290 Syntaphilin: Golgi-lo 60.9 2.4E+02 0.0051 31.2 14.2 26 303-328 70-95 (305)
80 PF07464 ApoLp-III: Apolipopho 59.4 1.3E+02 0.0028 30.4 11.5 46 428-473 84-129 (155)
81 PF14915 CCDC144C: CCDC144C pr 58.6 3E+02 0.0065 30.7 31.4 138 379-516 134-279 (305)
82 KOG0980 Actin-binding protein 57.8 5E+02 0.011 33.1 46.5 35 541-575 580-615 (980)
83 KOG0995 Centromere-associated 57.0 4.3E+02 0.0093 32.0 37.7 22 235-258 147-168 (581)
84 PF08397 IMD: IRSp53/MIM homol 56.4 2.6E+02 0.0057 29.3 22.6 122 414-549 3-125 (219)
85 cd07595 BAR_RhoGAP_Rich-like T 55.8 3E+02 0.0064 29.8 17.3 103 441-555 126-233 (244)
86 PF10146 zf-C4H2: Zinc finger- 55.4 2.9E+02 0.0064 29.6 14.2 24 350-373 57-80 (230)
87 PF10168 Nup88: Nuclear pore c 54.9 5.2E+02 0.011 32.4 19.8 20 455-474 647-666 (717)
88 PF09731 Mitofilin: Mitochondr 54.5 4.6E+02 0.0099 31.6 22.2 26 527-552 361-386 (582)
89 PF14643 DUF4455: Domain of un 53.9 4.4E+02 0.0095 31.2 49.5 31 371-401 68-98 (473)
90 PF10168 Nup88: Nuclear pore c 53.6 5.5E+02 0.012 32.2 21.2 15 249-263 533-547 (717)
91 KOG0804 Cytoplasmic Zn-finger 53.4 4.4E+02 0.0096 31.1 15.8 14 213-226 209-222 (493)
92 PF06008 Laminin_I: Laminin Do 53.1 3.2E+02 0.007 29.4 29.0 128 442-581 122-252 (264)
93 KOG1853 LIS1-interacting prote 52.9 3.4E+02 0.0074 29.6 21.9 102 371-489 27-128 (333)
94 KOG0996 Structural maintenance 52.7 6.8E+02 0.015 33.0 44.6 59 607-670 536-594 (1293)
95 cd07588 BAR_Amphiphysin The Bi 52.3 3.1E+02 0.0068 29.0 15.2 105 453-561 11-118 (211)
96 KOG1916 Nuclear protein, conta 52.1 6.3E+02 0.014 32.5 28.5 89 456-554 878-967 (1283)
97 PRK10361 DNA recombination pro 51.9 4.8E+02 0.01 31.1 23.9 43 687-729 371-413 (475)
98 KOG0240 Kinesin (SMY1 subfamil 51.6 5.2E+02 0.011 31.4 21.1 40 440-479 414-453 (607)
99 KOG0964 Structural maintenance 49.9 7E+02 0.015 32.3 33.3 111 441-564 391-501 (1200)
100 PF10174 Cast: RIM-binding pro 48.1 6.8E+02 0.015 31.7 48.4 135 380-515 383-525 (775)
101 COG4942 Membrane-bound metallo 47.7 5.2E+02 0.011 30.3 25.0 185 451-675 56-253 (420)
102 PF15066 CAGE1: Cancer-associa 47.7 5.5E+02 0.012 30.5 26.4 38 515-552 485-525 (527)
103 PF10267 Tmemb_cc2: Predicted 47.7 5.1E+02 0.011 30.1 17.5 96 462-568 270-365 (395)
104 TIGR02169 SMC_prok_A chromosom 47.6 7.4E+02 0.016 32.0 49.6 18 103-120 549-566 (1164)
105 PF09731 Mitofilin: Mitochondr 47.6 5.8E+02 0.013 30.7 26.7 111 556-667 405-532 (582)
106 PF09726 Macoilin: Transmembra 46.9 6.8E+02 0.015 31.3 27.2 32 456-487 617-648 (697)
107 KOG2911 Uncharacterized conser 46.5 4.2E+02 0.0091 31.0 14.1 32 437-468 322-355 (439)
108 PF11101 DUF2884: Protein of u 46.1 4E+02 0.0086 28.4 16.4 177 553-749 43-219 (229)
109 TIGR02168 SMC_prok_B chromosom 45.7 7.8E+02 0.017 31.7 49.1 14 14-27 25-38 (1179)
110 cd07623 BAR_SNX1_2 The Bin/Amp 45.0 4E+02 0.0087 28.1 25.3 69 563-641 149-217 (224)
111 smart00502 BBC B-Box C-termina 44.8 2.5E+02 0.0054 25.7 16.9 27 447-473 61-87 (127)
112 COG1201 Lhr Lhr-like helicases 44.3 11 0.00024 47.1 1.4 50 6-61 33-84 (814)
113 TIGR01541 tape_meas_lam_C phag 44.1 5.2E+02 0.011 29.2 23.4 44 456-502 150-193 (332)
114 KOG4673 Transcription factor T 44.0 7.3E+02 0.016 30.9 40.0 34 619-652 759-792 (961)
115 cd07596 BAR_SNX The Bin/Amphip 44.0 3.6E+02 0.0077 27.3 25.2 42 564-605 146-187 (218)
116 KOG0976 Rho/Rac1-interacting s 43.6 7.9E+02 0.017 31.2 42.4 19 586-604 506-524 (1265)
117 PRK04328 hypothetical protein; 43.5 23 0.0005 37.8 3.6 50 1-60 9-61 (249)
118 PF15397 DUF4618: Domain of un 43.4 4.8E+02 0.01 28.6 25.9 208 384-612 1-216 (258)
119 PF06160 EzrA: Septation ring 43.2 6.8E+02 0.015 30.3 45.5 41 534-575 299-339 (560)
120 PF05673 DUF815: Protein of un 42.9 27 0.00058 37.8 3.9 100 15-143 55-155 (249)
121 KOG4674 Uncharacterized conser 41.5 1.2E+03 0.025 32.6 57.5 138 440-586 693-846 (1822)
122 TIGR01005 eps_transp_fam exopo 41.3 8E+02 0.017 30.6 21.0 14 194-207 82-95 (754)
123 PF05911 DUF869: Plant protein 38.6 9.3E+02 0.02 30.5 25.6 114 393-514 89-207 (769)
124 COG0467 RAD55 RecA-superfamily 38.6 36 0.00077 36.4 4.1 26 1-26 9-37 (260)
125 COG3883 Uncharacterized protei 38.4 5.8E+02 0.013 28.1 19.9 33 293-325 72-104 (265)
126 PF04849 HAP1_N: HAP1 N-termin 38.4 6.2E+02 0.013 28.5 22.1 31 296-326 99-129 (306)
127 KOG0804 Cytoplasmic Zn-finger 38.1 7.4E+02 0.016 29.3 15.9 56 87-151 104-160 (493)
128 PF03915 AIP3: Actin interacti 37.9 7.3E+02 0.016 29.2 15.3 81 390-471 152-237 (424)
129 PF15070 GOLGA2L5: Putative go 37.9 8.6E+02 0.019 30.0 36.1 132 522-663 167-310 (617)
130 cd07619 BAR_Rich2 The Bin/Amph 37.0 5.9E+02 0.013 27.8 18.2 76 469-556 163-238 (248)
131 COG3883 Uncharacterized protei 37.0 6.1E+02 0.013 27.9 24.0 121 350-479 84-208 (265)
132 PRK09039 hypothetical protein; 36.9 6.7E+02 0.015 28.4 21.7 42 467-516 122-163 (343)
133 KOG0996 Structural maintenance 35.8 1.2E+03 0.026 31.0 50.8 35 748-782 1040-1074(1293)
134 KOG0250 DNA repair protein RAD 35.2 1.2E+03 0.025 30.7 32.0 17 753-769 839-855 (1074)
135 PF06730 FAM92: FAM92 protein; 34.2 6.1E+02 0.013 27.2 22.0 94 382-475 25-129 (219)
136 PF03915 AIP3: Actin interacti 34.0 4.2E+02 0.0091 31.1 11.9 29 711-739 348-376 (424)
137 KOG1853 LIS1-interacting prote 33.4 6.8E+02 0.015 27.4 21.2 33 444-480 151-183 (333)
138 KOG4460 Nuclear pore complex, 33.0 9.7E+02 0.021 29.1 17.4 13 8-20 212-224 (741)
139 TIGR03185 DNA_S_dndD DNA sulfu 33.0 1E+03 0.022 29.3 32.5 40 440-479 377-416 (650)
140 cd07622 BAR_SNX4 The Bin/Amphi 33.0 5.9E+02 0.013 26.6 22.4 46 587-632 150-195 (201)
141 PRK10869 recombination and rep 33.0 9.5E+02 0.021 29.0 26.9 39 464-502 337-375 (553)
142 PRK10626 hypothetical protein; 33.0 6.7E+02 0.015 27.2 15.1 33 707-739 197-229 (239)
143 PRK04778 septation ring format 32.7 9.7E+02 0.021 29.0 40.1 23 391-413 149-171 (569)
144 COG4942 Membrane-bound metallo 32.4 8.8E+02 0.019 28.5 29.8 8 236-243 25-32 (420)
145 PF10146 zf-C4H2: Zinc finger- 32.0 6.7E+02 0.015 26.9 14.2 38 383-420 26-63 (230)
146 PRK06893 DNA replication initi 31.7 20 0.00042 37.8 0.7 18 9-26 36-53 (229)
147 TIGR02169 SMC_prok_A chromosom 31.0 1.3E+03 0.028 29.9 47.0 27 7-42 21-47 (1164)
148 PF08702 Fib_alpha: Fibrinogen 31.0 5.5E+02 0.012 25.6 16.2 32 446-477 96-127 (146)
149 TIGR03877 thermo_KaiC_1 KaiC d 30.7 47 0.001 35.1 3.4 50 1-60 7-59 (237)
150 PF04849 HAP1_N: HAP1 N-termin 30.6 8.2E+02 0.018 27.5 24.4 33 504-536 255-290 (306)
151 KOG0976 Rho/Rac1-interacting s 30.4 1.2E+03 0.027 29.6 51.7 64 663-726 455-520 (1265)
152 PRK07720 fliJ flagellar biosyn 29.9 5.3E+02 0.011 25.1 18.7 74 451-550 68-141 (146)
153 KOG0933 Structural maintenance 29.7 1.4E+03 0.03 29.9 40.8 44 370-413 768-811 (1174)
154 cd07600 BAR_Gvp36 The Bin/Amph 29.5 7.5E+02 0.016 26.8 16.1 24 522-545 218-241 (242)
155 KOG0977 Nuclear envelope prote 28.8 1.1E+03 0.024 28.6 34.9 43 620-662 327-369 (546)
156 PF15035 Rootletin: Ciliary ro 28.2 6.9E+02 0.015 25.9 13.9 105 371-476 77-181 (182)
157 PF10498 IFT57: Intra-flagella 28.2 9.5E+02 0.021 27.5 16.1 21 464-484 331-351 (359)
158 TIGR02655 circ_KaiC circadian 27.8 53 0.0011 38.7 3.5 49 1-58 7-58 (484)
159 PF05008 V-SNARE: Vesicle tran 27.7 3.7E+02 0.008 23.2 8.0 18 460-477 60-77 (79)
160 COG3599 DivIVA Cell division i 27.6 7.7E+02 0.017 26.2 15.8 39 441-483 28-66 (212)
161 TIGR00634 recN DNA repair prot 27.6 1.1E+03 0.025 28.2 27.1 27 7-42 20-46 (563)
162 cd07679 F-BAR_PACSIN2 The F-BA 27.6 8.5E+02 0.018 26.7 23.4 96 508-604 116-216 (258)
163 PF02520 DUF148: Domain of unk 27.2 5.2E+02 0.011 24.1 10.2 81 391-480 18-98 (113)
164 cd01123 Rad51_DMC1_radA Rad51_ 27.1 28 0.0006 36.2 0.9 26 1-26 5-33 (235)
165 cd07612 BAR_Bin2 The Bin/Amphi 26.9 7.9E+02 0.017 26.1 13.4 78 453-534 11-91 (211)
166 PF05791 Bacillus_HBL: Bacillu 26.8 7.1E+02 0.015 25.6 16.7 34 447-480 142-175 (184)
167 PF13949 ALIX_LYPXL_bnd: ALIX 26.6 8.3E+02 0.018 26.3 31.1 37 439-475 189-225 (296)
168 COG0556 UvrB Helicase subunit 25.9 34 0.00074 40.8 1.4 54 14-67 34-101 (663)
169 PF05667 DUF812: Protein of un 24.9 1.4E+03 0.029 28.2 29.5 60 484-551 374-433 (594)
170 PRK06975 bifunctional uroporph 24.5 9.9E+02 0.021 29.6 13.6 52 496-551 377-428 (656)
171 COG1474 CDC6 Cdc6-related prot 24.4 91 0.002 35.6 4.5 38 15-61 45-83 (366)
172 PF10186 Atg14: UV radiation r 24.4 8.9E+02 0.019 25.9 20.7 20 457-476 122-141 (302)
173 KOG0980 Actin-binding protein 24.2 1.6E+03 0.035 28.9 41.6 43 728-783 758-800 (980)
174 PF11932 DUF3450: Protein of u 24.1 9E+02 0.019 25.8 15.6 26 381-406 76-101 (251)
175 PRK11281 hypothetical protein; 24.0 1.8E+03 0.039 29.3 31.5 14 245-258 63-76 (1113)
176 KOG4438 Centromere-associated 23.6 1.2E+03 0.027 27.3 30.9 38 445-482 324-361 (446)
177 PF04740 LXG: LXG domain of WX 23.6 7.9E+02 0.017 25.0 21.4 21 367-387 20-40 (204)
178 KOG3809 Microtubule-binding pr 23.6 1.2E+03 0.026 27.5 12.8 22 215-236 343-364 (583)
179 KOG4460 Nuclear pore complex, 23.6 1.4E+03 0.03 27.9 17.2 13 8-20 66-78 (741)
180 KOG4643 Uncharacterized coiled 23.1 1.8E+03 0.039 29.0 47.2 145 505-681 412-558 (1195)
181 COG0419 SbcC ATPase involved i 23.0 1.7E+03 0.036 28.6 57.2 16 11-26 24-39 (908)
182 TIGR03185 DNA_S_dndD DNA sulfu 22.5 1.5E+03 0.032 27.8 35.4 13 14-26 30-42 (650)
183 PF04740 LXG: LXG domain of WX 22.4 8.3E+02 0.018 24.8 21.3 67 411-477 50-122 (204)
184 PF09738 DUF2051: Double stran 22.3 1.1E+03 0.024 26.3 14.0 19 295-313 78-96 (302)
185 smart00787 Spc7 Spc7 kinetocho 22.0 1.1E+03 0.025 26.3 18.1 119 371-494 140-258 (312)
186 TIGR01843 type_I_hlyD type I s 22.0 1.1E+03 0.025 26.3 18.0 133 282-414 139-271 (423)
187 PF01093 Clusterin: Clusterin; 21.9 1.4E+03 0.029 27.1 15.0 32 671-703 309-340 (436)
188 KOG0612 Rho-associated, coiled 21.8 2E+03 0.044 29.1 39.6 41 540-582 626-666 (1317)
189 cd09235 V_Alix Middle V-domain 21.7 1.2E+03 0.025 26.3 17.6 149 291-465 188-338 (339)
190 PRK06620 hypothetical protein; 21.4 33 0.00072 35.9 0.2 15 13-27 45-59 (214)
191 PF11172 DUF2959: Protein of u 21.3 9.9E+02 0.021 25.3 20.9 67 392-468 129-195 (201)
192 cd07627 BAR_Vps5p The Bin/Amph 20.9 9.7E+02 0.021 25.0 26.1 40 563-602 143-182 (216)
193 PF11727 ISG65-75: Invariant s 20.9 1.1E+03 0.024 25.8 13.7 49 443-491 92-140 (286)
194 cd07666 BAR_SNX7 The Bin/Amphi 20.7 1.1E+03 0.024 25.6 19.6 37 586-622 193-229 (243)
195 KOG0962 DNA repair protein RAD 20.7 2.2E+03 0.047 29.0 36.6 30 569-598 1050-1079(1294)
196 COG2959 HemX Uncharacterized e 20.3 1.3E+03 0.028 26.8 12.1 85 460-550 55-140 (391)
197 PF08614 ATG16: Autophagy prot 20.2 6.8E+02 0.015 25.8 9.5 30 295-324 117-146 (194)
198 TIGR00255 conserved hypothetic 20.1 6.3E+02 0.014 28.1 9.7 57 608-670 232-288 (291)
No 1
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-129 Score=1144.06 Aligned_cols=808 Identities=43% Similarity=0.608 Sum_probs=761.8
Q ss_pred CCCCCCCcceEEEeeccCCCCCCCC-------------CCCCcHHHHHHHHHHHhhhCCCceEEEEeEEEEEcccccccC
Q 003495 4 RHEKEKGVNVQLCSMRQSGPNGELP-------------PEAGVIPRAVQQIFDTLESQNAEYSVKVTFLELYNEEITDLL 70 (815)
Q Consensus 4 l~~~~~GyN~~I~ayGqTGSGkt~t-------------~~~GIIPRal~~LF~~i~~~~~~~sV~vS~lEIYnE~V~DLL 70 (815)
|.+++.||||+||||||||+||||| +++|||||+|.+||+.++.++.+|+|+|||+|+|||+|+|||
T Consensus 121 i~eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~~EYsvKVSfLELYNEEl~DLL 200 (1041)
T KOG0243|consen 121 IKEVLEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQGAEYSVKVSFLELYNEELTDLL 200 (1041)
T ss_pred HHHHhccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcCCeEEEEEEehhhhhHHHHHhc
Confidence 5678999999999999999999996 689999999999999999999999999999999999999999
Q ss_pred CCcchhhhhhhhhccCccceeecCCCCeEecCcEEEEecCHHHHHHHhHhhhhccccccccccCCCCCCeeEEEEEEEEe
Q 003495 71 APDEISRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIK 150 (815)
Q Consensus 71 ~~~~~~~~~~~~~~~k~L~i~ed~~~gv~V~gLtev~V~S~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~V~~~ 150 (815)
+|........+....+++. |++|||+|+||.+++|+++.|++++|.+|.++|++++|.||++|||||+||+|+|+++
T Consensus 201 a~~~~~~~~~~~k~~~~~~---~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhik 277 (1041)
T KOG0243|consen 201 ASEDTSDKKLRIKDDSTIV---DGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIK 277 (1041)
T ss_pred CCccccccccccccCCccc---CCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEe
Confidence 9986431111222222222 6799999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCcceEEEeEEEEeeCCCCccccccCCcchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCcCCchhhhhhccCCC
Q 003495 151 EATPEGEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHLGHIPYRDSKLTRLLRDSLGG 230 (815)
Q Consensus 151 ~~~~~~~~~~~~skL~lVDLAGSEr~~ksga~g~r~kEa~~INkSL~aLg~VI~aL~~~~~hIPYRdSKLTrLLqdsLGG 230 (815)
+.++.|++++++|||+||||||||+++++|+++.|++|||.||+||+||||||+||+++.+|||||+|||||||||||||
T Consensus 278 e~t~~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGG 357 (1041)
T KOG0243|consen 278 ENTPEGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGG 357 (1041)
T ss_pred cCCCcchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccceEEecCCCCCChHhHHHHHHHHHHhhccccchh------------------------hhhhhhcCCcccchhhhh
Q 003495 231 RTKTCIIATVSPAVHCLEETLSTLDYAHRAKNIKNKPE------------------------VYAAREKNGVYIPKERYY 286 (815)
Q Consensus 231 nskT~~IatISP~~~~~eETlsTL~fA~rak~Ikn~p~------------------------v~~~r~~~g~~~~~~~~~ 286 (815)
++||||||||||+..+++||++||+||.|||+|+|+|+ ++++|++||+|++.++|.
T Consensus 358 kTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~ 437 (1041)
T KOG0243|consen 358 KTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYT 437 (1041)
T ss_pred CceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHH
Confidence 99999999999999999999999999999999999999 668999999999999997
Q ss_pred HHHHHHhh---------------------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003495 287 QEESERKS---------------------------------------------NLDQTIKLLNNTEEQLKKCQYALKEKD 321 (815)
Q Consensus 287 ~e~~e~k~---------------------------------------------~l~~~~~~l~~~~~~l~~~~~~l~e~e 321 (815)
+++.+++. .|.....++..+++.+.+++..|++++
T Consensus 438 ~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e 517 (1041)
T KOG0243|consen 438 QEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEE 517 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66544432 233333445556677777788889999
Q ss_pred HHHHHHHHh-----------------------------chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 003495 322 FIISEQKKA-----------------------------GREDKLNADNRSVVENFQVELAQQIGSLCDIVDLSTCQQNEH 372 (815)
Q Consensus 322 ~~i~~~~~~-----------------------------~~~~~l~~~n~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~ 372 (815)
+++..+.++ .+++++...|+..+..|..+|.+.++.++..+....+++..+
T Consensus 518 ~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n~~~~~~~~~~l~~~~~~~~~~v~~~~s~~~~~ 597 (1041)
T KOG0243|consen 518 EIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKDRLDDDNQEVIDDFQSQLSENLSTLHGLVASSSSQQISQ 597 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHhhhhhHHHHHHHHHHhhhhhhHHHH
Confidence 988877654 677778888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHhHHHHHHHHhhchhHHHHHHHHHHHHH
Q 003495 373 LKHVEKLCHSLLGIHEKAVIDLKKKVTASRALYCSHMEAVQNVVRLHKACSNANLEEISAFASSNSESIKEFLASEAREA 452 (815)
Q Consensus 373 l~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (815)
+..|...+.+|+..+......++.++...++.+.++++.++.+...++.++...++.|.+.+.+++..+...+......+
T Consensus 598 l~~~~~~~~s~~s~~~~~~e~~~t~~~~~r~~~~~~~e~~q~~~~~~k~~~~s~l~~i~s~~~~~~~~~~~~l~~~~~~~ 677 (1041)
T KOG0243|consen 598 LTTMLAQMESFLSAKSKATEIMKTKISKDRDILSEVLESLQQLQEVLKKDSESCLEVINSSITSSINELESMLETIANTA 677 (1041)
T ss_pred HHHHHhhhHHHhhhhccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccchhhHHHHHHHHHHHHHHH
Confidence 99999999999999988889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 003495 453 ASIYENLQTTLSTQQGEMAIFAREMRQRFQVTIERTKDIAEYTNGFLQKLLEESKSLENYAVQADENQMKSIADFQKAYE 532 (815)
Q Consensus 453 ~~~~~~l~~~l~~q~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~~ff~~l~~~a~~l~~~~~~~~~~~~~~l~~~~~~~~ 532 (815)
+.++++++..|+.|++.+..+++|.+..+...+...+.+++.+.+||++++.++.++.....+.+....+.+.+|+++|+
T Consensus 678 ~~~~~~i~~~l~~q~~~~~l~~~qe~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 757 (1041)
T KOG0243|consen 678 DDLLQNISSRLSNQQEILSLFANQELQELVLSQDSAQELSELTSTFFQTLDNQAEKLTNLFSEANISLSQKLSSFQKKFE 757 (1041)
T ss_pred HHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhccchHHHHHHHHHHHHhhhhhhhch
Q 003495 533 DQTKSDTEKLIADVTSLVSSHMRRQTELVEARLVDFRENAVSSKLFLDGHASSVEGITTDAKRKWQAFAMQADNDAKDGA 612 (815)
Q Consensus 533 ~~~~~e~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~mq~~t~~~~~~~~~~~~~~~~~~~~~~ 612 (815)
. .+.+.++++++|+.++.++.+++.++|..++..++.........+.+.++.|++.+.+++..|..+..+.++++.+..
T Consensus 758 ~-~~~~~~~~v~~~~e~~~~~~q~~~e~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~k~~~~~~~~~~~~~~~~~~ 836 (1041)
T KOG0243|consen 758 S-IAEDEKQLVEDIKELLSSHDQRNNELLDIALQTLRSAVNSRESNLTESVSVMQNLSDDLKTIWQTLGKQNENHHNEVL 836 (1041)
T ss_pred h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhHHHhhhhHHHHHHHHHHHHHHHhhhhHHH
Confidence 9 888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhHhHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHhHHHHHHHHhhhhhHHHHHHHHHHHhhHHHHHHhHH
Q 003495 613 DHSSAKHCRMELLLQECVNSGESAFGHWKRTYESVNEMESKHVSSMISLTRNASYSNEQHDVEVDTARVATEEEVAKSSE 692 (815)
Q Consensus 613 ~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 692 (815)
...+..++.|+..++.|...+.....+|+.+++++.++...+++.+|.+++.+.++|..++.++.+.+.+....++....
T Consensus 837 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~~~~l~~~~~~~~~k~~~e~~s~~~~~~~~~~~~~~ 916 (1041)
T KOG0243|consen 837 SAIEEKQQAMKSVLKELLENAESQVDECKEAIESLKSLESNHVATLDSLVRGVSEQNKKLQDEFLSLLNSKLNSFDVLTN 916 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhHHhhHHHHHHHhHHHhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHhHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHhhhcccCCcCCCCcccc-cCCCCcch
Q 003495 693 DALQLIASASEQEQASIAEVLDDVKAHEKTINLFRESHSAQSASIKEKAQETFQQRYMDYEHTGTTPTRCE-SEVPSKGT 771 (815)
Q Consensus 693 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~~~~~~~~eY~~~~ptg~TP~k~~-~~~ps~~s 771 (815)
+|.+.++.+...+.+...++...+.++.+.+..|..+|..+...|+.+++.|++++|++|+|++.||.+.. +++||.++
T Consensus 917 ~i~t~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~p~~~sp~~~s~~~~~s~~~ 996 (1041)
T KOG0243|consen 917 SIVTPHSILLKLDDDVLPETLVIISPSLELLGELFQDLEHKDRDIENNSGETSLDDYVVDEPSTSSPTKLSRINIPSIGS 996 (1041)
T ss_pred cccccccccccccccccccchHhhcccHHHHHHhhccccchhhhhhhccccccchhhcccccCCCCccccccCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred hhhccCCchHHHHHHHhhcCCCCcccccccCCCCCCCCCCCCCC
Q 003495 772 IESLRAMPMETLLEEFRENNSYESFDVKELKPSLIPRSPLSQIN 815 (815)
Q Consensus 772 Ie~~rt~~~e~ll~~~r~~~~~~~~~~k~~~~~~~~R~Pl~~iN 815 (815)
|+++++|+.+.+++++++.+.++....++-++....|+||.++|
T Consensus 997 v~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~n 1040 (1041)
T KOG0243|consen 997 VESLTTPFSEGTLRESRLNNELEVFKTGEIKGVSNGRPPLSAQN 1040 (1041)
T ss_pred ccccccCcccccccccccccchhhhccccccCCCCCCCchhhcc
Confidence 99999999999999999999998776666667889999999987
No 2
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2e-71 Score=641.17 Aligned_cols=259 Identities=43% Similarity=0.614 Sum_probs=242.2
Q ss_pred CCCCCCCcceEEEeeccCCCCCCCC-------CCCCcHHHHHHHHHHHhhh---CCCceEEEEeEEEEEcccccccCC-C
Q 003495 4 RHEKEKGVNVQLCSMRQSGPNGELP-------PEAGVIPRAVQQIFDTLES---QNAEYSVKVTFLELYNEEITDLLA-P 72 (815)
Q Consensus 4 l~~~~~GyN~~I~ayGqTGSGkt~t-------~~~GIIPRal~~LF~~i~~---~~~~~sV~vS~lEIYnE~V~DLL~-~ 72 (815)
|+.+|+|||||||||||||+||+|| +++|||||++.+||.++.. ++..|+|.|||+|||||+|+|||+ |
T Consensus 80 L~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p 159 (1221)
T KOG0245|consen 80 LDHAFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAP 159 (1221)
T ss_pred HHHHhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCC
Confidence 5789999999999999999999995 7899999999999999964 456899999999999999999998 4
Q ss_pred cchhhhhhhhhccCccceeecCCCCeEecCcEEEEecCHHHHHHHhHhhhhccccccccccCCCCCCeeEEEEEEEEeec
Q 003495 73 DEISRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIKEA 152 (815)
Q Consensus 73 ~~~~~~~~~~~~~k~L~i~ed~~~gv~V~gLtev~V~S~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~V~~~~~ 152 (815)
. .+.+|++||+|..|+||.+|+.+.|+|+.|+..+|..|++.|.+++|.||+.|||||+||+|++.++..
T Consensus 160 ~----------~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~ 229 (1221)
T KOG0245|consen 160 K----------SKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKH 229 (1221)
T ss_pred C----------CCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeec
Confidence 3 467899999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCC-cceEEEeEEEEeeCCCCccccccCCcchhhHHHHHhhhhHHHHHHHHHHHHhcC-------CCCCCcCCchhhhh
Q 003495 153 TPEG-EELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHL-------GHIPYRDSKLTRLL 224 (815)
Q Consensus 153 ~~~~-~~~~~~skL~lVDLAGSEr~~ksga~g~r~kEa~~INkSL~aLg~VI~aL~~~~-------~hIPYRdSKLTrLL 224 (815)
.... -...++||++|||||||||...+|+.|.|+|||.+|||||+|||+||.||++.+ .+||||||-||+||
T Consensus 230 ~~~~~l~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLL 309 (1221)
T KOG0245|consen 230 DQDTGLDSEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLL 309 (1221)
T ss_pred cccCCCcceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHH
Confidence 5443 345688999999999999999999999999999999999999999999999843 38999999999999
Q ss_pred hccCCCCcccceEEecCCCCCChHhHHHHHHHHHHhhccccchhhhhh
Q 003495 225 RDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKNIKNKPEVYAA 272 (815)
Q Consensus 225 qdsLGGnskT~~IatISP~~~~~eETlsTL~fA~rak~Ikn~p~v~~~ 272 (815)
++.||||+||.|||+|||++.||+|||+||+||.|||+|+|+|+||+.
T Consensus 310 kEnLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEd 357 (1221)
T KOG0245|consen 310 KENLGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNED 357 (1221)
T ss_pred HHhcCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCC
Confidence 999999999999999999999999999999999999999999998764
No 3
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.2e-71 Score=628.43 Aligned_cols=259 Identities=47% Similarity=0.660 Sum_probs=244.6
Q ss_pred CCCCCCCcceEEEeeccCCCCCCCC------CCCCcHHHHHHHHHHHhhhC--CCceEEEEeEEEEEcccccccCCCcch
Q 003495 4 RHEKEKGVNVQLCSMRQSGPNGELP------PEAGVIPRAVQQIFDTLESQ--NAEYSVKVTFLELYNEEITDLLAPDEI 75 (815)
Q Consensus 4 l~~~~~GyN~~I~ayGqTGSGkt~t------~~~GIIPRal~~LF~~i~~~--~~~~sV~vS~lEIYnE~V~DLL~~~~~ 75 (815)
++.++.|||+|||||||||+||||| ...|||||++.+||..|+.. ...|.|+|||+|||||.|+|||+|..
T Consensus 78 V~svl~GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~- 156 (574)
T KOG4280|consen 78 VESVLEGYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVN- 156 (574)
T ss_pred HHHHhcccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccC-
Confidence 4568999999999999999999996 57899999999999999754 34699999999999999999999863
Q ss_pred hhhhhhhhccCccceeecCCCCeEecCcEEEEecCHHHHHHHhHhhhhccccccccccCCCCCCeeEEEEEEEEeecCCC
Q 003495 76 SRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIKEATPE 155 (815)
Q Consensus 76 ~~~~~~~~~~k~L~i~ed~~~gv~V~gLtev~V~S~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~V~~~~~~~~ 155 (815)
++.|.|+++|+.||||+|++++.|.|+++++.+|..|..+|++++|.||..|||||+||||+|+......+
T Consensus 157 ---------~~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~ 227 (574)
T KOG4280|consen 157 ---------PKGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDG 227 (574)
T ss_pred ---------cCCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCC
Confidence 36899999999999999999999999999999999999999999999999999999999999998665566
Q ss_pred CcceEEEeEEEEeeCCCCccccccCCcchhhHHHHHhhhhHHHHHHHHHHHHhcCC-CCCCcCCchhhhhhccCCCCccc
Q 003495 156 GEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHLG-HIPYRDSKLTRLLRDSLGGRTKT 234 (815)
Q Consensus 156 ~~~~~~~skL~lVDLAGSEr~~ksga~g~r~kEa~~INkSL~aLg~VI~aL~~~~~-hIPYRdSKLTrLLqdsLGGnskT 234 (815)
+...++.|||+|||||||||..++|+.|.|++||++||+||++||+||.+|+++.. ||||||||||+||||||||||||
T Consensus 228 ~~~~~~~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT 307 (574)
T KOG4280|consen 228 GLMSGRSSKLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKT 307 (574)
T ss_pred CccccccceeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceE
Confidence 67778899999999999999999999999999999999999999999999999877 99999999999999999999999
Q ss_pred ceEEecCCCCCChHhHHHHHHHHHHhhccccchhhhhh
Q 003495 235 CIIATVSPAVHCLEETLSTLDYAHRAKNIKNKPEVYAA 272 (815)
Q Consensus 235 ~~IatISP~~~~~eETlsTL~fA~rak~Ikn~p~v~~~ 272 (815)
+|||||+|+..|++||++||+||.|||.|+|+|.+|..
T Consensus 308 ~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~ined 345 (574)
T KOG4280|consen 308 TMIANVSPSSDNYEETLSTLRFAQRAKAIKNKPVINED 345 (574)
T ss_pred EEEEecCchhhhhHHHHHHHHHHHHHHHhhccccccCC
Confidence 99999999999999999999999999999999999875
No 4
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=2e-66 Score=575.61 Aligned_cols=255 Identities=43% Similarity=0.630 Sum_probs=239.8
Q ss_pred CCCCCCCcceEEEeeccCCCCCCCC--------CCCCcHHHHHHHHHHHhhhCC--CceEEEEeEEEEEcccccccCCCc
Q 003495 4 RHEKEKGVNVQLCSMRQSGPNGELP--------PEAGVIPRAVQQIFDTLESQN--AEYSVKVTFLELYNEEITDLLAPD 73 (815)
Q Consensus 4 l~~~~~GyN~~I~ayGqTGSGkt~t--------~~~GIIPRal~~LF~~i~~~~--~~~sV~vS~lEIYnE~V~DLL~~~ 73 (815)
+++++.|||++||||||||+||||+ ...|||||++++||+.|...+ .+|+|+|||+|||+|+++|||+|.
T Consensus 75 v~dVL~GYNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~ 154 (607)
T KOG0240|consen 75 VDDVLLGYNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPE 154 (607)
T ss_pred HHHHhcccceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcc
Confidence 4678999999999999999999996 356999999999999997654 499999999999999999999974
Q ss_pred chhhhhhhhhccCccceeecCCCCeEecCcEEEEecCHHHHHHHhHhhhhccccccccccCCCCCCeeEEEEEEEEeecC
Q 003495 74 EISRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIKEAT 153 (815)
Q Consensus 74 ~~~~~~~~~~~~k~L~i~ed~~~gv~V~gLtev~V~S~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~V~~~~~~ 153 (815)
+.++.+++|...+++|+|+++..|.++++++..|+.|..+|+++.|.||.+|||||+||+|+|.+....
T Consensus 155 -----------k~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e 223 (607)
T KOG0240|consen 155 -----------KTNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVE 223 (607)
T ss_pred -----------cCCceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEecccc
Confidence 568999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred CCCcceEEEeEEEEeeCCCCccccccCCcchhhHHHHHhhhhHHHHHHHHHHHHhc-CCCCCCcCCchhhhhhccCCCCc
Q 003495 154 PEGEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEH-LGHIPYRDSKLTRLLRDSLGGRT 232 (815)
Q Consensus 154 ~~~~~~~~~skL~lVDLAGSEr~~ksga~g~r~kEa~~INkSL~aLg~VI~aL~~~-~~hIPYRdSKLTrLLqdsLGGns 232 (815)
.. ..++|+|+||||||||+++++|+.|.-+.||.+||+||.+||+||++|+++ ..|||||||||||||+|+|||||
T Consensus 224 ~~---~~~~gkLyLVDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNs 300 (607)
T KOG0240|consen 224 DK---RKLSGKLYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNS 300 (607)
T ss_pred ch---hhccccEEEEEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCc
Confidence 33 257899999999999999999999999999999999999999999999998 77999999999999999999999
Q ss_pred ccceEEecCCCCCChHhHHHHHHHHHHhhccccchhhhhh
Q 003495 233 KTCIIATVSPAVHCLEETLSTLDYAHRAKNIKNKPEVYAA 272 (815)
Q Consensus 233 kT~~IatISP~~~~~eETlsTL~fA~rak~Ikn~p~v~~~ 272 (815)
+|.||+|+||+..|-.||.+||+|+.|||.|+|.+.++..
T Consensus 301 RTtlIi~csPss~n~~ET~STl~fg~rak~ikN~v~~n~e 340 (607)
T KOG0240|consen 301 RTTLIICCSPSSLNEAETKSTLRFGNRAKTIKNTVWVNLE 340 (607)
T ss_pred ceEEEEecCCccccccccccchhhccccccccchhhhhhH
Confidence 9999999999999999999999999999999999998764
No 5
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=2.6e-64 Score=597.38 Aligned_cols=258 Identities=42% Similarity=0.667 Sum_probs=237.1
Q ss_pred CCCCCCCcceEEEeeccCCCCCCCC---------------CCCCcHHHHHHHHHHHhhh-------CCCceEEEEeEEEE
Q 003495 4 RHEKEKGVNVQLCSMRQSGPNGELP---------------PEAGVIPRAVQQIFDTLES-------QNAEYSVKVTFLEL 61 (815)
Q Consensus 4 l~~~~~GyN~~I~ayGqTGSGkt~t---------------~~~GIIPRal~~LF~~i~~-------~~~~~sV~vS~lEI 61 (815)
++.+++|||+||||||||||||||| .++|||||++++||..+.. .+..|.|+|||+||
T Consensus 158 V~svLdGyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEI 237 (1320)
T PLN03188 158 VENCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEI 237 (1320)
T ss_pred HHHHhcCCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEee
Confidence 4678999999999999999999996 1479999999999999853 24579999999999
Q ss_pred EcccccccCCCcchhhhhhhhhccCccceeecCCCCeEecCcEEEEecCHHHHHHHhHhhhhccccccccccCCCCCCee
Q 003495 62 YNEEITDLLAPDEISRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHS 141 (815)
Q Consensus 62 YnE~V~DLL~~~~~~~~~~~~~~~k~L~i~ed~~~gv~V~gLtev~V~S~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~ 141 (815)
|||.|||||++. .+.+.|++|+.+|++|.||+++.|.|++|++++|..|..+|++++|.+|..|||||+
T Consensus 238 YNEkI~DLLsp~-----------~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHa 306 (1320)
T PLN03188 238 YNEQITDLLDPS-----------QKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHS 306 (1320)
T ss_pred ecCcceeccccc-----------cCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCce
Confidence 999999999874 246999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeecC-CCCcceEEEeEEEEeeCCCCccccccCCcchhhHHHHHhhhhHHHHHHHHHHHHh-----cCCCCCC
Q 003495 142 LFSITIHIKEAT-PEGEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVE-----HLGHIPY 215 (815)
Q Consensus 142 IftI~V~~~~~~-~~~~~~~~~skL~lVDLAGSEr~~ksga~g~r~kEa~~INkSL~aLg~VI~aL~~-----~~~hIPY 215 (815)
||+|+|...... .++....+.|+|+|||||||||+.++++.|.+++|++.||+||++||+||++|+. +..||||
T Consensus 307 IFtI~Ves~~k~~~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPY 386 (1320)
T PLN03188 307 VFTCVVESRCKSVADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPY 386 (1320)
T ss_pred eEEEEEEEeecccCCCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCC
Confidence 999999865432 2344456789999999999999999999999999999999999999999999986 3469999
Q ss_pred cCCchhhhhhccCCCCcccceEEecCCCCCChHhHHHHHHHHHHhhccccchhhhhh
Q 003495 216 RDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKNIKNKPEVYAA 272 (815)
Q Consensus 216 RdSKLTrLLqdsLGGnskT~~IatISP~~~~~eETlsTL~fA~rak~Ikn~p~v~~~ 272 (815)
|+||||+||+|+|||||+|+|||||||+..+++||++||+||.|||+|+|+|.+|..
T Consensus 387 RDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~ 443 (1320)
T PLN03188 387 RDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEV 443 (1320)
T ss_pred CcchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccc
Confidence 999999999999999999999999999999999999999999999999999998754
No 6
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8.3e-64 Score=586.41 Aligned_cols=254 Identities=47% Similarity=0.730 Sum_probs=238.4
Q ss_pred CCCCCCCcceEEEeeccCCCCCCCC-----CCCCcHHHHHHHHHHHhhhC-CCceEEEEeEEEEEcccccccCCCcchhh
Q 003495 4 RHEKEKGVNVQLCSMRQSGPNGELP-----PEAGVIPRAVQQIFDTLESQ-NAEYSVKVTFLELYNEEITDLLAPDEISR 77 (815)
Q Consensus 4 l~~~~~GyN~~I~ayGqTGSGkt~t-----~~~GIIPRal~~LF~~i~~~-~~~~sV~vS~lEIYnE~V~DLL~~~~~~~ 77 (815)
++.++.|||++|||||+||+||||| .+|||||+++.+||+.|... +..|.|+|||+|||||.|+|||+|+.
T Consensus 79 v~~~l~G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~~r~f~v~vSYlEIYNE~I~DLL~~~~--- 155 (675)
T KOG0242|consen 79 LLSVLEGFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSGEREFSVRVSYLEIYNERIRDLLNPDG--- 155 (675)
T ss_pred HHHHhcCcccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcCCceeEEEEEEEEEeccccccccCCCC---
Confidence 4678999999999999999999997 68999999999999999753 56899999999999999999999864
Q ss_pred hhhhhhccCccceeecCCCCeEecCcEEEEecCHHHHHHHhHhhhhccccccccccCCCCCCeeEEEEEEEEeecCCCCc
Q 003495 78 AAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIKEATPEGE 157 (815)
Q Consensus 78 ~~~~~~~~k~L~i~ed~~~gv~V~gLtev~V~S~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~V~~~~~~~~~~ 157 (815)
.++.|+||+.+|++|.||+++.|.|.+++..+|..|..+|+++.|.+|..|||||+||+|+|........
T Consensus 156 --------~~L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~-- 225 (675)
T KOG0242|consen 156 --------GDLRLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS-- 225 (675)
T ss_pred --------CCceEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc--
Confidence 3599999999999999999999999999999999999999999999999999999999999987765443
Q ss_pred ceEEEeEEEEeeCCCCccccccCCcchhhHHHHHhhhhHHHHHHHHHHHHhc--CCCCCCcCCchhhhhhccCCCCcccc
Q 003495 158 ELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEH--LGHIPYRDSKLTRLLRDSLGGRTKTC 235 (815)
Q Consensus 158 ~~~~~skL~lVDLAGSEr~~ksga~g~r~kEa~~INkSL~aLg~VI~aL~~~--~~hIPYRdSKLTrLLqdsLGGnskT~ 235 (815)
. ..|+|+|||||||||..++++.|.|++||++||+||++||+||++|+++ ..||||||||||||||++|||||+|+
T Consensus 226 -~-~~s~L~lIDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~ 303 (675)
T KOG0242|consen 226 -S-RVSKLNLIDLAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTA 303 (675)
T ss_pred -c-hhheehhhhhhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEE
Confidence 1 6799999999999999999999999999999999999999999999986 56999999999999999999999999
Q ss_pred eEEecCCCCCChHhHHHHHHHHHHhhccccchhhhhh
Q 003495 236 IIATVSPAVHCLEETLSTLDYAHRAKNIKNKPEVYAA 272 (815)
Q Consensus 236 ~IatISP~~~~~eETlsTL~fA~rak~Ikn~p~v~~~ 272 (815)
|||||+|+..+|+||.+||.||+|||+|++++.++..
T Consensus 304 ~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~ 340 (675)
T KOG0242|consen 304 IIATISPSSSHYEETKNTLKFASRAKEITTKAQVNVI 340 (675)
T ss_pred EEEEeCchhhHHHHHHHHHHHHHHhhhccccccccee
Confidence 9999999999999999999999999999999987643
No 7
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=6.5e-63 Score=542.53 Aligned_cols=249 Identities=44% Similarity=0.673 Sum_probs=234.2
Q ss_pred CCCCCCCcceEEEeeccCCCCCCCC-----CCCCcHHHHHHHHHHHhhhC--CCceEEEEeEEEEEcccccccCCCcchh
Q 003495 4 RHEKEKGVNVQLCSMRQSGPNGELP-----PEAGVIPRAVQQIFDTLESQ--NAEYSVKVTFLELYNEEITDLLAPDEIS 76 (815)
Q Consensus 4 l~~~~~GyN~~I~ayGqTGSGkt~t-----~~~GIIPRal~~LF~~i~~~--~~~~sV~vS~lEIYnE~V~DLL~~~~~~ 76 (815)
++.+++|||+|||+||+|||||||| .++|||||++++||+.++.. +..|.|++||+|||||+|+|||++.
T Consensus 80 v~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~--- 156 (338)
T cd01370 80 VDGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPS--- 156 (338)
T ss_pred HHHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCC---
Confidence 4678999999999999999999996 68999999999999999754 4789999999999999999999874
Q ss_pred hhhhhhhccCccceeecCCCCeEecCcEEEEecCHHHHHHHhHhhhhccccccccccCCCCCCeeEEEEEEEEeecCCCC
Q 003495 77 RAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIKEATPEG 156 (815)
Q Consensus 77 ~~~~~~~~~k~L~i~ed~~~gv~V~gLtev~V~S~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~V~~~~~~~~~ 156 (815)
.+++.+++|+.++++|.|++++.|.|++|++++|..|..+|.+++|.+|..|||||+||+|+|.........
T Consensus 157 --------~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~ 228 (338)
T cd01370 157 --------SGPLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASI 228 (338)
T ss_pred --------CCCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCC
Confidence 357999999999999999999999999999999999999999999999999999999999999987765433
Q ss_pred cceEEEeEEEEeeCCCCccccccCCcchhhHHHHHhhhhHHHHHHHHHHHHhcC---CCCCCcCCchhhhhhccCCCCcc
Q 003495 157 EELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHL---GHIPYRDSKLTRLLRDSLGGRTK 233 (815)
Q Consensus 157 ~~~~~~skL~lVDLAGSEr~~ksga~g~r~kEa~~INkSL~aLg~VI~aL~~~~---~hIPYRdSKLTrLLqdsLGGnsk 233 (815)
......|+|+|||||||||..++++.|.+++|+..||+||++|++||.+|+.+. .|||||+||||+||+|+|||||+
T Consensus 229 ~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~ 308 (338)
T cd01370 229 NQQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCK 308 (338)
T ss_pred CCcEEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCe
Confidence 445678999999999999999999999999999999999999999999999987 89999999999999999999999
Q ss_pred cceEEecCCCCCChHhHHHHHHHHHHhhcc
Q 003495 234 TCIIATVSPAVHCLEETLSTLDYAHRAKNI 263 (815)
Q Consensus 234 T~~IatISP~~~~~eETlsTL~fA~rak~I 263 (815)
|+||+||||+..+++||++||+||.|||+|
T Consensus 309 t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 309 TVMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred EEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999987
No 8
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=1.2e-62 Score=540.20 Aligned_cols=248 Identities=47% Similarity=0.678 Sum_probs=228.1
Q ss_pred CCCCCCCcceEEEeeccCCCCCCCC-------------CCCCcHHHHHHHHHHHhhh------CCCceEEEEeEEEEEcc
Q 003495 4 RHEKEKGVNVQLCSMRQSGPNGELP-------------PEAGVIPRAVQQIFDTLES------QNAEYSVKVTFLELYNE 64 (815)
Q Consensus 4 l~~~~~GyN~~I~ayGqTGSGkt~t-------------~~~GIIPRal~~LF~~i~~------~~~~~sV~vS~lEIYnE 64 (815)
++.+|+|||+|||+||+|||||||| .++|||||++++||..++. .+..|.|++||+|||||
T Consensus 67 v~~~~~G~n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne 146 (337)
T cd01373 67 VEDCLSGYNGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNE 146 (337)
T ss_pred HHHHhCCCceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCC
Confidence 4578999999999999999999996 1579999999999998853 24589999999999999
Q ss_pred cccccCCCcchhhhhhhhhccCccceeecCCCCeEecCcEEEEecCHHHHHHHhHhhhhccccccccccCCCCCCeeEEE
Q 003495 65 EITDLLAPDEISRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFS 144 (815)
Q Consensus 65 ~V~DLL~~~~~~~~~~~~~~~k~L~i~ed~~~gv~V~gLtev~V~S~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ift 144 (815)
+|+|||++. ...+.+++++.+|++|.|++++.|.|++|++++|..|..+|++++|.+|..|||||+||+
T Consensus 147 ~v~DLL~~~-----------~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~ 215 (337)
T cd01373 147 QITDLLDPT-----------SRNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFT 215 (337)
T ss_pred EeeeCCCCC-----------CCCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEE
Confidence 999999864 246999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeecCCCCcceEEEeEEEEeeCCCCccccccCCcchhhHHHHHhhhhHHHHHHHHHHHHh----cCCCCCCcCCch
Q 003495 145 ITIHIKEATPEGEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVE----HLGHIPYRDSKL 220 (815)
Q Consensus 145 I~V~~~~~~~~~~~~~~~skL~lVDLAGSEr~~ksga~g~r~kEa~~INkSL~aLg~VI~aL~~----~~~hIPYRdSKL 220 (815)
|+|........ ......|+|+|||||||||..++++.|.+++|++.||+||++|++||.+|++ +..|||||+|||
T Consensus 216 i~v~~~~~~~~-~~~~~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkL 294 (337)
T cd01373 216 CTIESWEKKAS-STNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKL 294 (337)
T ss_pred EEEEEeecCCC-CCcEEEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHH
Confidence 99986654332 2245679999999999999999999999999999999999999999999986 357999999999
Q ss_pred hhhhhccCCCCcccceEEecCCCCCChHhHHHHHHHHHHhhcc
Q 003495 221 TRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKNI 263 (815)
Q Consensus 221 TrLLqdsLGGnskT~~IatISP~~~~~eETlsTL~fA~rak~I 263 (815)
|+||+|+||||++|+|||||||+..+++||++||+||.|||.|
T Consensus 295 T~lL~dsLggns~t~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 295 TFLLRDSLGGNAKTTIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred HHHHHHhcCCCceEEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999987
No 9
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=1.2e-61 Score=534.98 Aligned_cols=260 Identities=67% Similarity=0.944 Sum_probs=245.4
Q ss_pred CCCCCCCcceEEEeeccCCCCCCCC----------------CCCCcHHHHHHHHHHHhhhCCCceEEEEeEEEEEccccc
Q 003495 4 RHEKEKGVNVQLCSMRQSGPNGELP----------------PEAGVIPRAVQQIFDTLESQNAEYSVKVTFLELYNEEIT 67 (815)
Q Consensus 4 l~~~~~GyN~~I~ayGqTGSGkt~t----------------~~~GIIPRal~~LF~~i~~~~~~~sV~vS~lEIYnE~V~ 67 (815)
++.+++|||+|||+||+|||||||+ +.+|||||++.+||+.++..+..|.|+|||+|||||+|+
T Consensus 74 v~~~~~G~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~ 153 (352)
T cd01364 74 LDEVLMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQNTEYSVKVSYLELYNEELF 153 (352)
T ss_pred HHHHhCCCeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhccceeEEEEEEEEeeCCeee
Confidence 4678999999999999999999985 137999999999999998888899999999999999999
Q ss_pred ccCCCcchhhhhhhhhccCccceeec--CCCCeEecCcEEEEecCHHHHHHHhHhhhhccccccccccCCCCCCeeEEEE
Q 003495 68 DLLAPDEISRAAVEDKQKKQLPLMED--GKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSI 145 (815)
Q Consensus 68 DLL~~~~~~~~~~~~~~~k~L~i~ed--~~~gv~V~gLtev~V~S~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI 145 (815)
|||++.. ..++++.++++ +.+|++|.|++++.|.|++|++++|..|..+|.+++|.+|..|||||+||+|
T Consensus 154 DLL~~~~--------~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i 225 (352)
T cd01364 154 DLLSSES--------DLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSI 225 (352)
T ss_pred eCCCCcc--------ccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEE
Confidence 9998753 24568999999 6999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCcceEEEeEEEEeeCCCCccccccCCcchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCcCCchhhhhh
Q 003495 146 TIHIKEATPEGEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHLGHIPYRDSKLTRLLR 225 (815)
Q Consensus 146 ~V~~~~~~~~~~~~~~~skL~lVDLAGSEr~~ksga~g~r~kEa~~INkSL~aLg~VI~aL~~~~~hIPYRdSKLTrLLq 225 (815)
+|.+......++..+..|+|+||||||||+..++++.+.+++|+..||+||++|++||.+|+.+..|||||+||||+||+
T Consensus 226 ~i~~~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~lL~ 305 (352)
T cd01364 226 TIHIKETTISGEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRLLQ 305 (352)
T ss_pred EEEEeccCCCCCccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHH
Confidence 99988777667777788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcccceEEecCCCCCChHhHHHHHHHHHHhhccccchhhhh
Q 003495 226 DSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKNIKNKPEVYA 271 (815)
Q Consensus 226 dsLGGnskT~~IatISP~~~~~eETlsTL~fA~rak~Ikn~p~v~~ 271 (815)
|+|||||+|+||+||||+..+++||++||+||.|+++|+|+|.+|.
T Consensus 306 ~~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 306 DSLGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred HhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 9999999999999999999999999999999999999999998763
No 10
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8.3e-62 Score=551.33 Aligned_cols=260 Identities=41% Similarity=0.612 Sum_probs=239.9
Q ss_pred CCCCCCCcceEEEeeccCCCCCCCC-----CCCCcHHHHHHHHHHHhhh---CCCceEEEEeEEEEEcccccccCCCcch
Q 003495 4 RHEKEKGVNVQLCSMRQSGPNGELP-----PEAGVIPRAVQQIFDTLES---QNAEYSVKVTFLELYNEEITDLLAPDEI 75 (815)
Q Consensus 4 l~~~~~GyN~~I~ayGqTGSGkt~t-----~~~GIIPRal~~LF~~i~~---~~~~~sV~vS~lEIYnE~V~DLL~~~~~ 75 (815)
+.++|+|||.|||+|||||+||+|+ +.+|||||.+..||..|.. .+..|.|.|||+|||||++||||.|..
T Consensus 86 l~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdPk~- 164 (1714)
T KOG0241|consen 86 LENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDPKG- 164 (1714)
T ss_pred HHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCCCC-
Confidence 3578999999999999999999996 8999999999999999964 355899999999999999999999865
Q ss_pred hhhhhhhhccCccceeecCCCCeEecCcEEEEecCHHHHHHHhHhhhhccccccccccCCCCCCeeEEEEEEEEeecCCC
Q 003495 76 SRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIKEATPE 155 (815)
Q Consensus 76 ~~~~~~~~~~k~L~i~ed~~~gv~V~gLtev~V~S~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~V~~~~~~~~ 155 (815)
.++.|+++++.--|.||.||++..|+|++|+-.+|..|.++|++++|.||..|||||+||.|.|.+.-.++.
T Consensus 165 --------ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~k 236 (1714)
T KOG0241|consen 165 --------SSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLK 236 (1714)
T ss_pred --------CcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccc
Confidence 457899999999999999999999999999999999999999999999999999999999999987543322
Q ss_pred -CcceEEEeEEEEeeCCCCccccccCCcchhhHHHHHhhhhHHHHHHHHHHHHhc------CCCCCCcCCchhhhhhccC
Q 003495 156 -GEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEH------LGHIPYRDSKLTRLLRDSL 228 (815)
Q Consensus 156 -~~~~~~~skL~lVDLAGSEr~~ksga~g~r~kEa~~INkSL~aLg~VI~aL~~~------~~hIPYRdSKLTrLLqdsL 228 (815)
|...-+.|||.|||||||||..++|+.|.|++|+++||+||.+||.||.+|+++ ..+||||||-||+||+|+|
T Consensus 237 tg~SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~L 316 (1714)
T KOG0241|consen 237 TGHSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNL 316 (1714)
T ss_pred cCcchhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhc
Confidence 223346799999999999999999999999999999999999999999999983 3589999999999999999
Q ss_pred CCCcccceEEecCCCCCChHhHHHHHHHHHHhhccccchhhhhh
Q 003495 229 GGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKNIKNKPEVYAA 272 (815)
Q Consensus 229 GGnskT~~IatISP~~~~~eETlsTL~fA~rak~Ikn~p~v~~~ 272 (815)
||||+|+||+||||+..||+||++||+||.|||+|+|...||..
T Consensus 317 GGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNed 360 (1714)
T KOG0241|consen 317 GGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNED 360 (1714)
T ss_pred CCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCC
Confidence 99999999999999999999999999999999999999998764
No 11
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=2.3e-61 Score=531.68 Aligned_cols=249 Identities=38% Similarity=0.596 Sum_probs=229.5
Q ss_pred CCCCCCCcceEEEeeccCCCCCCCC-----CCCCcHHHHHHHHHHHhhhCCCceEEEEeEEEEEcccccccCCCcchhhh
Q 003495 4 RHEKEKGVNVQLCSMRQSGPNGELP-----PEAGVIPRAVQQIFDTLESQNAEYSVKVTFLELYNEEITDLLAPDEISRA 78 (815)
Q Consensus 4 l~~~~~GyN~~I~ayGqTGSGkt~t-----~~~GIIPRal~~LF~~i~~~~~~~sV~vS~lEIYnE~V~DLL~~~~~~~~ 78 (815)
++.+++|||+|||+||+|||||||| .++|||||++++||+.+.. |.|+|||+|||||+|+|||++....
T Consensus 81 v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~----~~v~~S~~EIyne~v~DLL~~~~~~-- 154 (345)
T cd01368 81 VQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG----YSVFVSYVEIYNNYIYDLLEDSPSS-- 154 (345)
T ss_pred HHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh----eeEEEEEEEEeCCEeEeCCCCcccc--
Confidence 4568999999999999999999996 7899999999999999875 9999999999999999999986421
Q ss_pred hhhhhccCccceeecCCCCeEecCcEEEEecCHHHHHHHhHhhhhccccccccccCCCCCCeeEEEEEEEEeecCCCC--
Q 003495 79 AVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIKEATPEG-- 156 (815)
Q Consensus 79 ~~~~~~~k~L~i~ed~~~gv~V~gLtev~V~S~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~V~~~~~~~~~-- 156 (815)
...++++.+++|+.++++|.|++++.|.|++|++++|..|..+|.+++|.+|..|||||+||+|+|........+
T Consensus 155 ---~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~ 231 (345)
T cd01368 155 ---TKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDV 231 (345)
T ss_pred ---ccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCccccc
Confidence 123568999999999999999999999999999999999999999999999999999999999999876544322
Q ss_pred ---cceEEEeEEEEeeCCCCccccccCCcchhhHHHHHhhhhHHHHHHHHHHHHh------cCCCCCCcCCchhhhhhcc
Q 003495 157 ---EELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVE------HLGHIPYRDSKLTRLLRDS 227 (815)
Q Consensus 157 ---~~~~~~skL~lVDLAGSEr~~ksga~g~r~kEa~~INkSL~aLg~VI~aL~~------~~~hIPYRdSKLTrLLqds 227 (815)
...+..|+|+|||||||||..++++.|.+++|++.||+||++|++||.+|++ +..|||||+||||+||+|+
T Consensus 232 ~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~ 311 (345)
T cd01368 232 DQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNY 311 (345)
T ss_pred ccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHh
Confidence 2456789999999999999999999999999999999999999999999997 4679999999999999999
Q ss_pred CCCCcccceEEecCCCCCChHhHHHHHHHHHHhh
Q 003495 228 LGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAK 261 (815)
Q Consensus 228 LGGnskT~~IatISP~~~~~eETlsTL~fA~rak 261 (815)
|||+++|+||+||||+..+++||++||+||.+|+
T Consensus 312 l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 312 FDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred cCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999985
No 12
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=1.9e-60 Score=526.40 Aligned_cols=259 Identities=46% Similarity=0.642 Sum_probs=238.3
Q ss_pred CCCCCCCcceEEEeeccCCCCCCCC-----CCCCcHHHHHHHHHHHhhhC---CCceEEEEeEEEEEcccccccCCCcch
Q 003495 4 RHEKEKGVNVQLCSMRQSGPNGELP-----PEAGVIPRAVQQIFDTLESQ---NAEYSVKVTFLELYNEEITDLLAPDEI 75 (815)
Q Consensus 4 l~~~~~GyN~~I~ayGqTGSGkt~t-----~~~GIIPRal~~LF~~i~~~---~~~~sV~vS~lEIYnE~V~DLL~~~~~ 75 (815)
++.+++|||+|||+||+|||||||| .++|||||++++||+.+... +..|.|+|||+|||||+|+|||++..
T Consensus 81 v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~- 159 (356)
T cd01365 81 LDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKK- 159 (356)
T ss_pred HHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCc-
Confidence 4568999999999999999999996 57999999999999999654 45899999999999999999998753
Q ss_pred hhhhhhhhccCccceeecCCCCeEecCcEEEEecCHHHHHHHhHhhhhccccccccccCCCCCCeeEEEEEEEEeecCCC
Q 003495 76 SRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIKEATPE 155 (815)
Q Consensus 76 ~~~~~~~~~~k~L~i~ed~~~gv~V~gLtev~V~S~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~V~~~~~~~~ 155 (815)
..+.++.+++++.+|++|+|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+......
T Consensus 160 -------~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~ 232 (356)
T cd01365 160 -------KNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKE 232 (356)
T ss_pred -------cCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccC
Confidence 1345799999999999999999999999999999999999999999999999999999999999987655432
Q ss_pred -CcceEEEeEEEEeeCCCCccccccCCcchhhHHHHHhhhhHHHHHHHHHHHHhc--------CCCCCCcCCchhhhhhc
Q 003495 156 -GEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEH--------LGHIPYRDSKLTRLLRD 226 (815)
Q Consensus 156 -~~~~~~~skL~lVDLAGSEr~~ksga~g~r~kEa~~INkSL~aLg~VI~aL~~~--------~~hIPYRdSKLTrLLqd 226 (815)
+......|+|+||||||||+..+++..+.+++|+..||+||++|++||.+|+.+ ..|||||+||||+||+|
T Consensus 233 ~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~ 312 (356)
T cd01365 233 TDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKE 312 (356)
T ss_pred CCCCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHH
Confidence 234567899999999999999999999999999999999999999999999874 47999999999999999
Q ss_pred cCCCCcccceEEecCCCCCChHhHHHHHHHHHHhhccccchhhh
Q 003495 227 SLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKNIKNKPEVY 270 (815)
Q Consensus 227 sLGGnskT~~IatISP~~~~~eETlsTL~fA~rak~Ikn~p~v~ 270 (815)
+|||+++|+||+||||...+++||++||+||.|+++|+|+|+++
T Consensus 313 ~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 313 NLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred hcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 99999999999999999999999999999999999999999763
No 13
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=2.6e-59 Score=512.99 Aligned_cols=250 Identities=47% Similarity=0.693 Sum_probs=234.6
Q ss_pred CCCCCCCcceEEEeeccCCCCCCCC--------CCCCcHHHHHHHHHHHhhhC-CCceEEEEeEEEEEcccccccCCCcc
Q 003495 4 RHEKEKGVNVQLCSMRQSGPNGELP--------PEAGVIPRAVQQIFDTLESQ-NAEYSVKVTFLELYNEEITDLLAPDE 74 (815)
Q Consensus 4 l~~~~~GyN~~I~ayGqTGSGkt~t--------~~~GIIPRal~~LF~~i~~~-~~~~sV~vS~lEIYnE~V~DLL~~~~ 74 (815)
++.+++|||+|||+||++||||||| ..+|||||++++||+.+... +..|.|++||+|||||+|+|||++..
T Consensus 74 v~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~ 153 (333)
T cd01371 74 VDSVLEGYNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGKDQ 153 (333)
T ss_pred HHHHhCCCceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccCccEEEEEEEEEeeCCeeeeCCCCCC
Confidence 4678999999999999999999996 38999999999999999753 46899999999999999999998742
Q ss_pred hhhhhhhhhccCccceeecCCCCeEecCcEEEEecCHHHHHHHhHhhhhccccccccccCCCCCCeeEEEEEEEEeecCC
Q 003495 75 ISRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIKEATP 154 (815)
Q Consensus 75 ~~~~~~~~~~~k~L~i~ed~~~gv~V~gLtev~V~S~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~V~~~~~~~ 154 (815)
.+++.+++++.+|++|.|++++.|.|++|+..+|..|.++|.+++|.+|..|||||+||+|+|.......
T Consensus 154 ----------~~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~ 223 (333)
T cd01371 154 ----------KKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGE 223 (333)
T ss_pred ----------CCceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccC
Confidence 3579999999999999999999999999999999999999999999999999999999999998877655
Q ss_pred CCcceEEEeEEEEeeCCCCccccccCCcchhhHHHHHhhhhHHHHHHHHHHHHhcCC-CCCCcCCchhhhhhccCCCCcc
Q 003495 155 EGEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHLG-HIPYRDSKLTRLLRDSLGGRTK 233 (815)
Q Consensus 155 ~~~~~~~~skL~lVDLAGSEr~~ksga~g~r~kEa~~INkSL~aLg~VI~aL~~~~~-hIPYRdSKLTrLLqdsLGGnsk 233 (815)
.+...+..|+|+||||||||+..++++.+.+++|+..||+||.+|++||.+|+.+.. |||||+||||+||+|+|||+|+
T Consensus 224 ~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~ 303 (333)
T cd01371 224 DGENHIRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSK 303 (333)
T ss_pred CCCCcEEEEEEEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCce
Confidence 456667889999999999999999999999999999999999999999999999876 9999999999999999999999
Q ss_pred cceEEecCCCCCChHhHHHHHHHHHHhhcc
Q 003495 234 TCIIATVSPAVHCLEETLSTLDYAHRAKNI 263 (815)
Q Consensus 234 T~~IatISP~~~~~eETlsTL~fA~rak~I 263 (815)
|+||+||+|...+++||++||+||.|||+|
T Consensus 304 t~~I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 304 TVMCANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred EEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999987
No 14
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=2.1e-59 Score=511.70 Aligned_cols=240 Identities=40% Similarity=0.576 Sum_probs=226.0
Q ss_pred CCCCCCCcceEEEeeccCCCCCCCC-----CCCCcHHHHHHHHHHHhhhCCCceEEEEeEEEEEcccccccCCCcchhhh
Q 003495 4 RHEKEKGVNVQLCSMRQSGPNGELP-----PEAGVIPRAVQQIFDTLESQNAEYSVKVTFLELYNEEITDLLAPDEISRA 78 (815)
Q Consensus 4 l~~~~~GyN~~I~ayGqTGSGkt~t-----~~~GIIPRal~~LF~~i~~~~~~~sV~vS~lEIYnE~V~DLL~~~~~~~~ 78 (815)
++.+++|||+|||+||+|||||||+ .++|||||++++||+.++.....|.|++||+|||||.|+|||++.
T Consensus 77 v~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~----- 151 (322)
T cd01367 77 IPHVFEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPNDDLGVTVSFFEIYGGKLFDLLNDR----- 151 (322)
T ss_pred HHHHhCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccccccEEEEEEEeeecCchhhhccCc-----
Confidence 4578999999999999999999996 579999999999999998777899999999999999999999862
Q ss_pred hhhhhccCccceeecCCCCeEecCcEEEEecCHHHHHHHhHhhhhccccccccccCCCCCCeeEEEEEEEEeecCCCCcc
Q 003495 79 AVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIKEATPEGEE 158 (815)
Q Consensus 79 ~~~~~~~k~L~i~ed~~~gv~V~gLtev~V~S~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~V~~~~~~~~~~~ 158 (815)
+++.+++|+.++++|.|++++.|.|++|++++|..|..+|.+++|.+|..|||||+||+|.|.....
T Consensus 152 -------~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~------ 218 (322)
T cd01367 152 -------KRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL------ 218 (322)
T ss_pred -------cceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC------
Confidence 4799999999999999999999999999999999999999999999999999999999999986553
Q ss_pred eEEEeEEEEeeCCCCccccccC-CcchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCcCCchhhhhhccCCCCcccceE
Q 003495 159 LIKCGKLNLVDLAGSENISRSG-AREGRAREAGEINKSLLTLGRVINALVEHLGHIPYRDSKLTRLLRDSLGGRTKTCII 237 (815)
Q Consensus 159 ~~~~skL~lVDLAGSEr~~ksg-a~g~r~kEa~~INkSL~aLg~VI~aL~~~~~hIPYRdSKLTrLLqdsLGGnskT~~I 237 (815)
....|+|+||||||||+....+ ..+.+++|+..||+||++|++||.+|+.+..||||||||||+||+|+|||+|+|+||
T Consensus 219 ~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I 298 (322)
T cd01367 219 NKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMI 298 (322)
T ss_pred CeeEEEEEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEEEE
Confidence 2467999999999999998765 467899999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCChHhHHHHHHHHHHhh
Q 003495 238 ATVSPAVHCLEETLSTLDYAHRAK 261 (815)
Q Consensus 238 atISP~~~~~eETlsTL~fA~rak 261 (815)
+||||+..+++||++||+||.|+|
T Consensus 299 ~~vsp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 299 ATISPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred EEeCCchhhHHHHHHHHHHHHhhC
Confidence 999999999999999999999986
No 15
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=3.3e-59 Score=509.41 Aligned_cols=242 Identities=38% Similarity=0.586 Sum_probs=229.1
Q ss_pred CCCCCCCcceEEEeeccCCCCCCCC-----CCCCcHHHHHHHHHHHhhhCCCceEEEEeEEEEEcccccccCCCcchhhh
Q 003495 4 RHEKEKGVNVQLCSMRQSGPNGELP-----PEAGVIPRAVQQIFDTLESQNAEYSVKVTFLELYNEEITDLLAPDEISRA 78 (815)
Q Consensus 4 l~~~~~GyN~~I~ayGqTGSGkt~t-----~~~GIIPRal~~LF~~i~~~~~~~sV~vS~lEIYnE~V~DLL~~~~~~~~ 78 (815)
++.+++|||+|||+||+|||||||+ .++|||||++++||+.++..+..|.|++||+|||||+|+|||++.
T Consensus 73 v~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~----- 147 (319)
T cd01376 73 VPHLLSGQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQAWTGAFSMSYYEIYNEKVYDLLEPA----- 147 (319)
T ss_pred HHHHhCCCceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhccccceEEEEEEEEECCEeeEccCCC-----
Confidence 4578999999999999999999996 579999999999999998877899999999999999999999874
Q ss_pred hhhhhccCccceeecCCCCeEecCcEEEEecCHHHHHHHhHhhhhccccccccccCCCCCCeeEEEEEEEEeecCCCCcc
Q 003495 79 AVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIKEATPEGEE 158 (815)
Q Consensus 79 ~~~~~~~k~L~i~ed~~~gv~V~gLtev~V~S~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~V~~~~~~~~~~~ 158 (815)
+..+.+++++.++++|.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+||+|.|.+....
T Consensus 148 ------~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~----- 216 (319)
T cd01376 148 ------KKELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN----- 216 (319)
T ss_pred ------CCCceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCC-----
Confidence 346899999999999999999999999999999999999999999999999999999999999866432
Q ss_pred eEEEeEEEEeeCCCCccccccCCcchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCcCCchhhhhhccCCCCcccceEE
Q 003495 159 LIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHLGHIPYRDSKLTRLLRDSLGGRTKTCIIA 238 (815)
Q Consensus 159 ~~~~skL~lVDLAGSEr~~ksga~g~r~kEa~~INkSL~aLg~VI~aL~~~~~hIPYRdSKLTrLLqdsLGGnskT~~Ia 238 (815)
....|+|+||||||||+..++++.|.+++|+..||+||++|++||.+|..+..|||||+||||+||+|+|||+++|+||+
T Consensus 217 ~~~~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~ 296 (319)
T cd01376 217 IQLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVA 296 (319)
T ss_pred ceEEEEEEEEECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEEEE
Confidence 25789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCChHhHHHHHHHHHHhh
Q 003495 239 TVSPAVHCLEETLSTLDYAHRAK 261 (815)
Q Consensus 239 tISP~~~~~eETlsTL~fA~rak 261 (815)
||||...+++||++||+||+|||
T Consensus 297 ~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 297 NIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred EeCCchhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999986
No 16
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=1.8e-58 Score=506.71 Aligned_cols=252 Identities=40% Similarity=0.602 Sum_probs=232.1
Q ss_pred CCCCCCCcceEEEeeccCCCCCCCC--------CCCCcHHHHHHHHHHHhhhC-CCceEEEEeEEEEEcccccccCCCcc
Q 003495 4 RHEKEKGVNVQLCSMRQSGPNGELP--------PEAGVIPRAVQQIFDTLESQ-NAEYSVKVTFLELYNEEITDLLAPDE 74 (815)
Q Consensus 4 l~~~~~GyN~~I~ayGqTGSGkt~t--------~~~GIIPRal~~LF~~i~~~-~~~~sV~vS~lEIYnE~V~DLL~~~~ 74 (815)
++.+++|||+|||+||+|||||||| .++|||||++.+||..++.. +..|.|++||+|||||+|+|||++..
T Consensus 73 v~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~ 152 (334)
T cd01375 73 VDSALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLGDTP 152 (334)
T ss_pred HHHHhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhccCcceEEEEEEEEEECCEeecCCCCCc
Confidence 4568999999999999999999997 36899999999999999754 56899999999999999999999864
Q ss_pred hhhhhhhhhccCccceeecCCCCeEecCcEEEEecCHHHHHHHhHhhhhccccccccccCCCCCCeeEEEEEEEEeecCC
Q 003495 75 ISRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIKEATP 154 (815)
Q Consensus 75 ~~~~~~~~~~~k~L~i~ed~~~gv~V~gLtev~V~S~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~V~~~~~~~ 154 (815)
.. ....+++.+++|+.++++|+|++++.|.+++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+....+
T Consensus 153 ~~-----~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~ 227 (334)
T cd01375 153 EA-----LESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREA 227 (334)
T ss_pred cc-----cccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCC
Confidence 21 1234679999999999999999999999999999999999999999999999999999999999999875444
Q ss_pred CCcceEEEeEEEEeeCCCCccccccCCcchhhHHHHHhhhhHHHHHHHHHHHHhcC-CCCCCcCCchhhhhhccCCCCcc
Q 003495 155 EGEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHL-GHIPYRDSKLTRLLRDSLGGRTK 233 (815)
Q Consensus 155 ~~~~~~~~skL~lVDLAGSEr~~ksga~g~r~kEa~~INkSL~aLg~VI~aL~~~~-~hIPYRdSKLTrLLqdsLGGnsk 233 (815)
.+ .....|+|+||||||||+..++++.+.+++|+..||+||++|++||.+|+++. .|||||+||||+||+|+|||+|+
T Consensus 228 ~~-~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~ 306 (334)
T cd01375 228 GS-EVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCK 306 (334)
T ss_pred CC-CceEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCce
Confidence 33 34578999999999999999999999999999999999999999999999988 89999999999999999999999
Q ss_pred cceEEecCCCCCChHhHHHHHHHHHHhh
Q 003495 234 TCIIATVSPAVHCLEETLSTLDYAHRAK 261 (815)
Q Consensus 234 T~~IatISP~~~~~eETlsTL~fA~rak 261 (815)
|+||+||||...+++||++||+||.|++
T Consensus 307 t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 307 TVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred EEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999985
No 17
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=2.2e-58 Score=503.24 Aligned_cols=248 Identities=45% Similarity=0.714 Sum_probs=232.2
Q ss_pred CCCCCCCcceEEEeeccCCCCCCCC-----CCCCcHHHHHHHHHHHhhh-CCCceEEEEeEEEEEcccccccCCCcchhh
Q 003495 4 RHEKEKGVNVQLCSMRQSGPNGELP-----PEAGVIPRAVQQIFDTLES-QNAEYSVKVTFLELYNEEITDLLAPDEISR 77 (815)
Q Consensus 4 l~~~~~GyN~~I~ayGqTGSGkt~t-----~~~GIIPRal~~LF~~i~~-~~~~~sV~vS~lEIYnE~V~DLL~~~~~~~ 77 (815)
++++++|||+|||+||++||||||| .++|||||++++||..+.. .+..|.|++||+|||||.|+|||+|..
T Consensus 66 v~~~l~G~n~~i~ayG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~--- 142 (321)
T cd01374 66 VRSALEGYNGTIFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSP--- 142 (321)
T ss_pred HHHHHCCCceeEEeecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEEcCEeEEccCCCC---
Confidence 4678999999999999999999997 5689999999999999964 356899999999999999999999752
Q ss_pred hhhhhhccCccceeecCCCCeEecCcEEEEecCHHHHHHHhHhhhhccccccccccCCCCCCeeEEEEEEEEeecCCCCc
Q 003495 78 AAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIKEATPEGE 157 (815)
Q Consensus 78 ~~~~~~~~k~L~i~ed~~~gv~V~gLtev~V~S~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~V~~~~~~~~~~ 157 (815)
+++.+++|+.+|++|.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|........+.
T Consensus 143 --------~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~ 214 (321)
T cd01374 143 --------QELRIREDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSES 214 (321)
T ss_pred --------CCceEEECCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCC
Confidence 579999999999999999999999999999999999999999999999999999999999999877655444
Q ss_pred ceEEEeEEEEeeCCCCccccccCCcchhhHHHHHhhhhHHHHHHHHHHHHhcC--CCCCCcCCchhhhhhccCCCCcccc
Q 003495 158 ELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHL--GHIPYRDSKLTRLLRDSLGGRTKTC 235 (815)
Q Consensus 158 ~~~~~skL~lVDLAGSEr~~ksga~g~r~kEa~~INkSL~aLg~VI~aL~~~~--~hIPYRdSKLTrLLqdsLGGnskT~ 235 (815)
.....|+|+||||||||+..+.+ .+.+++|+..||+||.+|++||.+|+.+. .|||||+||||+||+|+|||+++|+
T Consensus 215 ~~~~~s~l~~vDLAGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~ 293 (321)
T cd01374 215 GTVRVSTLNLIDLAGSERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTA 293 (321)
T ss_pred CcEEEEEEEEEECCCCCccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEE
Confidence 55678999999999999999998 89999999999999999999999999985 8999999999999999999999999
Q ss_pred eEEecCCCCCChHhHHHHHHHHHHhhcc
Q 003495 236 IIATVSPAVHCLEETLSTLDYAHRAKNI 263 (815)
Q Consensus 236 ~IatISP~~~~~eETlsTL~fA~rak~I 263 (815)
||+||||...+++||++||+||.|+++|
T Consensus 294 ~i~~vsp~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 294 IICTISPASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred EEEEeCCccccHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999986
No 18
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=2.9e-58 Score=505.96 Aligned_cols=253 Identities=46% Similarity=0.722 Sum_probs=233.6
Q ss_pred CCCCCCCcceEEEeeccCCCCCCCC-----------CCCCcHHHHHHHHHHHhhhCC--CceEEEEeEEEEEcccccccC
Q 003495 4 RHEKEKGVNVQLCSMRQSGPNGELP-----------PEAGVIPRAVQQIFDTLESQN--AEYSVKVTFLELYNEEITDLL 70 (815)
Q Consensus 4 l~~~~~GyN~~I~ayGqTGSGkt~t-----------~~~GIIPRal~~LF~~i~~~~--~~~sV~vS~lEIYnE~V~DLL 70 (815)
++.+++|||+|||+||+|||||||| .++|||||++++||..++... .+|.|+|||+|||||.|+|||
T Consensus 66 v~~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL 145 (341)
T cd01372 66 VDGLFEGYNATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLL 145 (341)
T ss_pred HHHHhCCCccceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCC
Confidence 5678999999999999999999996 258999999999999997543 589999999999999999999
Q ss_pred CCcchhhhhhhhhccCccceeecCCCCeEecCcEEEEecCHHHHHHHhHhhhhccccccccccCCCCCCeeEEEEEEEEe
Q 003495 71 APDEISRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIK 150 (815)
Q Consensus 71 ~~~~~~~~~~~~~~~k~L~i~ed~~~gv~V~gLtev~V~S~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~V~~~ 150 (815)
++.. ..+.++.+++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|.|.+.
T Consensus 146 ~~~~--------~~~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~ 217 (341)
T cd01372 146 SPST--------SEKSPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQT 217 (341)
T ss_pred CCcc--------cCCCCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEE
Confidence 8753 13468999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ecCC-------CCcceEEEeEEEEeeCCCCccccccCCcchhhHHHHHhhhhHHHHHHHHHHHHhcC---CCCCCcCCch
Q 003495 151 EATP-------EGEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHL---GHIPYRDSKL 220 (815)
Q Consensus 151 ~~~~-------~~~~~~~~skL~lVDLAGSEr~~ksga~g~r~kEa~~INkSL~aLg~VI~aL~~~~---~hIPYRdSKL 220 (815)
.... ........|+|+||||||||+..++++.+.+++|+..||+||++|++||.+|+.+. .|||||+|||
T Consensus 218 ~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~L 297 (341)
T cd01372 218 RKNGPIAPMSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKL 297 (341)
T ss_pred ecCCccccccccCCCceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHH
Confidence 6531 12344678999999999999999999999999999999999999999999999876 6999999999
Q ss_pred hhhhhccCCCCcccceEEecCCCCCChHhHHHHHHHHHHhhccc
Q 003495 221 TRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKNIK 264 (815)
Q Consensus 221 TrLLqdsLGGnskT~~IatISP~~~~~eETlsTL~fA~rak~Ik 264 (815)
|+||+|+|||+++|+||+||||...+++||++||+||.|||+|+
T Consensus 298 T~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 298 TRLLQDSLGGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred HHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999986
No 19
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=7.1e-58 Score=499.92 Aligned_cols=246 Identities=46% Similarity=0.671 Sum_probs=229.5
Q ss_pred CCCCCCCcceEEEeeccCCCCCCCC--------CCCCcHHHHHHHHHHHhhhC--CCceEEEEeEEEEEcccccccCCCc
Q 003495 4 RHEKEKGVNVQLCSMRQSGPNGELP--------PEAGVIPRAVQQIFDTLESQ--NAEYSVKVTFLELYNEEITDLLAPD 73 (815)
Q Consensus 4 l~~~~~GyN~~I~ayGqTGSGkt~t--------~~~GIIPRal~~LF~~i~~~--~~~~sV~vS~lEIYnE~V~DLL~~~ 73 (815)
++.+++|||+|||+||+|||||||+ .++|||||++++||+.+... +.+|.|++||+|||||.|+|||++.
T Consensus 69 v~~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~ 148 (325)
T cd01369 69 VDDVLNGYNGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVS 148 (325)
T ss_pred HHHHHcCccceEEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCc
Confidence 3568999999999999999999996 27899999999999999653 4589999999999999999999874
Q ss_pred chhhhhhhhhccCccceeecCCCCeEecCcEEEEecCHHHHHHHhHhhhhccccccccccCCCCCCeeEEEEEEEEeecC
Q 003495 74 EISRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIKEAT 153 (815)
Q Consensus 74 ~~~~~~~~~~~~k~L~i~ed~~~gv~V~gLtev~V~S~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~V~~~~~~ 153 (815)
+..+.+++++.+|++|+|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+....
T Consensus 149 -----------~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~ 217 (325)
T cd01369 149 -----------KDNLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVE 217 (325)
T ss_pred -----------cCCceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecC
Confidence 346899999999999999999999999999999999999999999999999999999999999876543
Q ss_pred CCCcceEEEeEEEEeeCCCCccccccCCcchhhHHHHHhhhhHHHHHHHHHHHHhcC-CCCCCcCCchhhhhhccCCCCc
Q 003495 154 PEGEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHL-GHIPYRDSKLTRLLRDSLGGRT 232 (815)
Q Consensus 154 ~~~~~~~~~skL~lVDLAGSEr~~ksga~g~r~kEa~~INkSL~aLg~VI~aL~~~~-~hIPYRdSKLTrLLqdsLGGns 232 (815)
. .....|+|+||||||||+..++++.|.+++|+..||+||++|++||.+|+++. .|||||+||||+||+|+|||+|
T Consensus 218 ~---~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s 294 (325)
T cd01369 218 T---GSKKRGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNS 294 (325)
T ss_pred C---CCEEEEEEEEEECCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCC
Confidence 2 23578999999999999999999999999999999999999999999999987 8999999999999999999999
Q ss_pred ccceEEecCCCCCChHhHHHHHHHHHHhhcc
Q 003495 233 KTCIIATVSPAVHCLEETLSTLDYAHRAKNI 263 (815)
Q Consensus 233 kT~~IatISP~~~~~eETlsTL~fA~rak~I 263 (815)
+|+||+||||+..+++||++||+||.|||+|
T Consensus 295 ~t~~I~~vsp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 295 RTTLIICCSPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred eEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999986
No 20
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=3.5e-57 Score=495.06 Aligned_cols=252 Identities=42% Similarity=0.618 Sum_probs=235.1
Q ss_pred CCCCCCCcceEEEeeccCCCCCCCC-----CCCCcHHHHHHHHHHHhhhC---CCceEEEEeEEEEEcccccccCCCcch
Q 003495 4 RHEKEKGVNVQLCSMRQSGPNGELP-----PEAGVIPRAVQQIFDTLESQ---NAEYSVKVTFLELYNEEITDLLAPDEI 75 (815)
Q Consensus 4 l~~~~~GyN~~I~ayGqTGSGkt~t-----~~~GIIPRal~~LF~~i~~~---~~~~sV~vS~lEIYnE~V~DLL~~~~~ 75 (815)
++.+++|||+|||+||++|+||||+ .++|||||++++||..++.. +..|.|++||+|||||+|+|||++..
T Consensus 70 v~~~~~G~~~~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~- 148 (329)
T cd01366 70 VQSALDGYNVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKP- 148 (329)
T ss_pred HHHHhCCCceEEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCc-
Confidence 4678999999999999999999996 57999999999999998653 56899999999999999999999753
Q ss_pred hhhhhhhhccCccceeecCCCCeEecCcEEEEecCHHHHHHHhHhhhhccccccccccCCCCCCeeEEEEEEEEeecCCC
Q 003495 76 SRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIKEATPE 155 (815)
Q Consensus 76 ~~~~~~~~~~k~L~i~ed~~~gv~V~gLtev~V~S~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~V~~~~~~~~ 155 (815)
..++++.+++++.++++|.|++++.|.|++|+..+|..|..+|.++.|.+|..|||||+||+|.|......
T Consensus 149 -------~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~-- 219 (329)
T cd01366 149 -------APKKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQ-- 219 (329)
T ss_pred -------CCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCC--
Confidence 23568999999999999999999999999999999999999999999999999999999999999876543
Q ss_pred CcceEEEeEEEEeeCCCCccccccCCcchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCcCCchhhhhhccCCCCcccc
Q 003495 156 GEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHLGHIPYRDSKLTRLLRDSLGGRTKTC 235 (815)
Q Consensus 156 ~~~~~~~skL~lVDLAGSEr~~ksga~g~r~kEa~~INkSL~aLg~VI~aL~~~~~hIPYRdSKLTrLLqdsLGGnskT~ 235 (815)
......|+|+||||||||+..+.++.+.+++|+..||+||.+|++||.+|+.+..|||||+||||+||+|+|||+++|+
T Consensus 220 -~~~~~~s~l~~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t~ 298 (329)
T cd01366 220 -TGEQTRGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKTL 298 (329)
T ss_pred -CCcEEEEEEEEEECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCceEE
Confidence 2235689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCCChHhHHHHHHHHHHhhccccc
Q 003495 236 IIATVSPAVHCLEETLSTLDYAHRAKNIKNK 266 (815)
Q Consensus 236 ~IatISP~~~~~eETlsTL~fA~rak~Ikn~ 266 (815)
||+||||...+++||++||+||.|+++|++.
T Consensus 299 ~i~~vsp~~~~~~etl~tL~~a~~~~~i~~~ 329 (329)
T cd01366 299 MFVNISPLESNLSETLCSLRFASRVRSVELG 329 (329)
T ss_pred EEEEeCCchhhHHHHHHHHHHHHHhhcccCC
Confidence 9999999999999999999999999999873
No 21
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=9.1e-57 Score=492.18 Aligned_cols=253 Identities=46% Similarity=0.741 Sum_probs=230.5
Q ss_pred CCCCCCCcceEEEeeccCCCCCCCC-------CCCCcHHHHHHHHHHHhhhCC----CceEEEEeEEEEEcccccccCCC
Q 003495 4 RHEKEKGVNVQLCSMRQSGPNGELP-------PEAGVIPRAVQQIFDTLESQN----AEYSVKVTFLELYNEEITDLLAP 72 (815)
Q Consensus 4 l~~~~~GyN~~I~ayGqTGSGkt~t-------~~~GIIPRal~~LF~~i~~~~----~~~sV~vS~lEIYnE~V~DLL~~ 72 (815)
++.+++|||+|||+||++||||||+ .++|||||++++||..++... ..|.|+|||+|||||.|+|||++
T Consensus 67 v~~~l~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~ 146 (335)
T PF00225_consen 67 VDSVLDGYNATIFAYGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSP 146 (335)
T ss_dssp HHHHHTT-EEEEEEEESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTST
T ss_pred HHHhhcCCceEEEeeccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCc
Confidence 3568999999999999999999973 589999999999999997643 47999999999999999999998
Q ss_pred cchhhhhhhhhccCccceeecCCCC-eEecCcEEEEecCHHHHHHHhHhhhhccccccccccCCCCCCeeEEEEEEEEee
Q 003495 73 DEISRAAVEDKQKKQLPLMEDGKGG-VLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIKE 151 (815)
Q Consensus 73 ~~~~~~~~~~~~~k~L~i~ed~~~g-v~V~gLtev~V~S~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~V~~~~ 151 (815)
.. ....+++.+++|+..| ++|+|++++.|.|++|++.+|..|..+|.++.|.+|..|||||+||+|+|.+..
T Consensus 147 ~~-------~~~~~~l~i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~ 219 (335)
T PF00225_consen 147 NN-------SKSRKPLKIREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKD 219 (335)
T ss_dssp TS-------SSTTSEBEEEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEE
T ss_pred cc-------cccccccceeeccccccceeeccccccccccccccccccchhhcccccccccccccccccccccccccccc
Confidence 63 1134589999999976 999999999999999999999999999999999999999999999999999887
Q ss_pred cCCCCc-ceEEEeEEEEeeCCCCccccccCCc-chhhHHHHHhhhhHHHHHHHHHHHHhc--CCCCCCcCCchhhhhhcc
Q 003495 152 ATPEGE-ELIKCGKLNLVDLAGSENISRSGAR-EGRAREAGEINKSLLTLGRVINALVEH--LGHIPYRDSKLTRLLRDS 227 (815)
Q Consensus 152 ~~~~~~-~~~~~skL~lVDLAGSEr~~ksga~-g~r~kEa~~INkSL~aLg~VI~aL~~~--~~hIPYRdSKLTrLLqds 227 (815)
...... .....|+|+||||||||+..+.++. +.+.+|++.||+||.+|++||.+|+.+ ..|||||+||||+||+|+
T Consensus 220 ~~~~~~~~~~~~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~ 299 (335)
T PF00225_consen 220 RDPSDDEESVKHSRLTFVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDS 299 (335)
T ss_dssp TTTTTEEEEEEEEEEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGG
T ss_pred ccccccccceeecceeeeecccccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceeccc
Confidence 765543 2357899999999999999999874 788999999999999999999999999 899999999999999999
Q ss_pred CCCCcccceEEecCCCCCChHhHHHHHHHHHHhhcc
Q 003495 228 LGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKNI 263 (815)
Q Consensus 228 LGGnskT~~IatISP~~~~~eETlsTL~fA~rak~I 263 (815)
|||+|+|+||+||||...+++||++||+||.++|+|
T Consensus 300 l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 300 LGGNSKTILIVCVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp TSSSSEEEEEEEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred ccccccceeEEEcCCccccHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999987
No 22
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6.2e-54 Score=498.48 Aligned_cols=255 Identities=45% Similarity=0.663 Sum_probs=233.5
Q ss_pred CCCCCCcceEEEeeccCCCCCCCC---------CCCCcHHHHHHHHHHHhhhC-CCceEEEEeEEEEEcccccccCCCcc
Q 003495 5 HEKEKGVNVQLCSMRQSGPNGELP---------PEAGVIPRAVQQIFDTLESQ-NAEYSVKVTFLELYNEEITDLLAPDE 74 (815)
Q Consensus 5 ~~~~~GyN~~I~ayGqTGSGkt~t---------~~~GIIPRal~~LF~~i~~~-~~~~sV~vS~lEIYnE~V~DLL~~~~ 74 (815)
+.+|+|||+++++|||||+||||+ ++.|||||++..+|.++... ...|.|.|||+|||++.|+|||.|..
T Consensus 59 ~~lf~gynatvlaygQtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~~~f~i~vs~vely~e~v~dl~~~~~ 138 (913)
T KOG0244|consen 59 EKLFAGYNATVLAYGQTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTESFVFRITVSFVELYNEEVLDLLKPSR 138 (913)
T ss_pred HHHhhhhcceeeeecccCCCceeecccccccccccCCcCcchHHHHHHHHHhhhccceeeeeeeeeccchhhhhhcChhh
Confidence 468999999999999999999996 23599999999999999754 35899999999999999999999643
Q ss_pred hhhhhhhhhccCccceeecCCCCeEecCcEEEEecCHHHHHHHhHhhhhccccccccccCCCCCCeeEEEEEEEEeecCC
Q 003495 75 ISRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIKEATP 154 (815)
Q Consensus 75 ~~~~~~~~~~~k~L~i~ed~~~gv~V~gLtev~V~S~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~V~~~~~~~ 154 (815)
.+.++.+++ ++|++.+.|++++.|.+..++...|..|...|++++|.||..|||||+||||++.+.....
T Consensus 139 ---------~~~~i~~~e-~~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~ 208 (913)
T KOG0244|consen 139 ---------LKANIKLRE-PKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLS 208 (913)
T ss_pred ---------hhhceeccc-cCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhh
Confidence 244688888 8899999999999999999999999999999999999999999999999999997644333
Q ss_pred CCcceEEEeEEEEeeCCCCccccccCCcchhhHHHHHhhhhHHHHHHHHHHHHhcCC--CCCCcCCchhhhhhccCCCCc
Q 003495 155 EGEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHLG--HIPYRDSKLTRLLRDSLGGRT 232 (815)
Q Consensus 155 ~~~~~~~~skL~lVDLAGSEr~~ksga~g~r~kEa~~INkSL~aLg~VI~aL~~~~~--hIPYRdSKLTrLLqdsLGGns 232 (815)
.. ...++||+|||||||||.+++++.|.|++||.+||.+|++||+||.||.+... |||||+|||||||||+||||+
T Consensus 209 ~~--s~~~sKlhlVDLAGSER~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns 286 (913)
T KOG0244|consen 209 KR--SSFCSKLHLVDLAGSERVKKTKAEGDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNS 286 (913)
T ss_pred cc--chhhhhhheeeccccccccccccchhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCc
Confidence 22 24579999999999999999999999999999999999999999999998655 999999999999999999999
Q ss_pred ccceEEecCCCCCChHhHHHHHHHHHHhhccccchhhhh
Q 003495 233 KTCIIATVSPAVHCLEETLSTLDYAHRAKNIKNKPEVYA 271 (815)
Q Consensus 233 kT~~IatISP~~~~~eETlsTL~fA~rak~Ikn~p~v~~ 271 (815)
.|+||+||||+..|.+||++||+||.||++|+|+|.+|.
T Consensus 287 ~tlmiaCiSpadsn~~EtlnTl~ya~Rak~iknk~vvN~ 325 (913)
T KOG0244|consen 287 DTLMIACISPADSNAQETLNTLRYADRAKQIKNKPVVNQ 325 (913)
T ss_pred ceeeeeecChhhhhhhhHHHHHHHhhHHHHhcccccccc
Confidence 999999999999999999999999999999999999875
No 23
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=4.6e-57 Score=527.96 Aligned_cols=253 Identities=41% Similarity=0.599 Sum_probs=235.2
Q ss_pred CCCCCCCcceEEEeeccCCCCCCCC------CCCCcHHHHHHHHHHHhhh--CCCceEEEEeEEEEEcccccccCCCcch
Q 003495 4 RHEKEKGVNVQLCSMRQSGPNGELP------PEAGVIPRAVQQIFDTLES--QNAEYSVKVTFLELYNEEITDLLAPDEI 75 (815)
Q Consensus 4 l~~~~~GyN~~I~ayGqTGSGkt~t------~~~GIIPRal~~LF~~i~~--~~~~~sV~vS~lEIYnE~V~DLL~~~~~ 75 (815)
++.++|||||||||||||||||||| .++|||||++.+||..+.. .++.|.+.+||+|||||.|+|||++..
T Consensus 385 v~S~lDGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~- 463 (670)
T KOG0239|consen 385 VQSALDGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDES- 463 (670)
T ss_pred HHHHhcCcceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccc-
Confidence 4568999999999999999999996 3889999999999999864 368999999999999999999998752
Q ss_pred hhhhhhhhccCccceeecCCCCeEecCcEEEEecCHHHHHHHhHhhhhccccccccccCCCCCCeeEEEEEEEEeecCCC
Q 003495 76 SRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIKEATPE 155 (815)
Q Consensus 76 ~~~~~~~~~~k~L~i~ed~~~gv~V~gLtev~V~S~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~V~~~~~~~~ 155 (815)
....+.|+.++.++++|.|++.+.|.+.+++..+++.|..+|.+++|.+|.+|||||+||+|+|......++
T Consensus 464 --------~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t~ 535 (670)
T KOG0239|consen 464 --------YVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINELTG 535 (670)
T ss_pred --------cccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccCcc
Confidence 245789999999999999999999999999999999999999999999999999999999999976643332
Q ss_pred CcceEEEeEEEEeeCCCCccccccCCcchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCcCCchhhhhhccCCCCcccc
Q 003495 156 GEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHLGHIPYRDSKLTRLLRDSLGGRTKTC 235 (815)
Q Consensus 156 ~~~~~~~skL~lVDLAGSEr~~ksga~g~r~kEa~~INkSL~aLg~VI~aL~~~~~hIPYRdSKLTrLLqdsLGGnskT~ 235 (815)
....|.|+|||||||||++++++.|.|++|+..||+||++||.||.||+.+.+|||||+||||+||+|+|||++||.
T Consensus 536 ---~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq~sLGG~sKTL 612 (670)
T KOG0239|consen 536 ---IRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKLTQLLQDSLGGDSKTL 612 (670)
T ss_pred ---cccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccchHHHhHhhhCCcccee
Confidence 24579999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCCChHhHHHHHHHHHHhhccccchh
Q 003495 236 IIATVSPAVHCLEETLSTLDYAHRAKNIKNKPE 268 (815)
Q Consensus 236 ~IatISP~~~~~eETlsTL~fA~rak~Ikn~p~ 268 (815)
|+++|||...++.||+++|+||.|++.+...|-
T Consensus 613 mfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a 645 (670)
T KOG0239|consen 613 MFVNISPAAAALFETLCSLRFATRVRSVELGSA 645 (670)
T ss_pred eEEEeCccHHHHhhhhhccchHHHhhceecccc
Confidence 999999999999999999999999999988774
No 24
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=2.2e-55 Score=481.72 Aligned_cols=254 Identities=50% Similarity=0.755 Sum_probs=236.8
Q ss_pred CCCCCCCcceEEEeeccCCCCCCCC-----CCCCcHHHHHHHHHHHhhhC--CCceEEEEeEEEEEcccccccCCCcchh
Q 003495 4 RHEKEKGVNVQLCSMRQSGPNGELP-----PEAGVIPRAVQQIFDTLESQ--NAEYSVKVTFLELYNEEITDLLAPDEIS 76 (815)
Q Consensus 4 l~~~~~GyN~~I~ayGqTGSGkt~t-----~~~GIIPRal~~LF~~i~~~--~~~~sV~vS~lEIYnE~V~DLL~~~~~~ 76 (815)
++.+++|+|+|||+||++|+||||+ +++|||||++++||+.+... +..|.|+|||+|||||.|+|||++.
T Consensus 72 v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~--- 148 (335)
T smart00129 72 VDSVLEGYNATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPS--- 148 (335)
T ss_pred HHHHhcCCceeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCC---
Confidence 5678999999999999999999986 67899999999999999653 4689999999999999999999864
Q ss_pred hhhhhhhccCccceeecCCCCeEecCcEEEEecCHHHHHHHhHhhhhccccccccccCCCCCCeeEEEEEEEEeecCCCC
Q 003495 77 RAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIKEATPEG 156 (815)
Q Consensus 77 ~~~~~~~~~k~L~i~ed~~~gv~V~gLtev~V~S~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~V~~~~~~~~~ 156 (815)
++++.+++++.+++++.|++++.|.|++|+.++|..|..+|.+++|.+|..|||||+||+|+|.+..... .
T Consensus 149 --------~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~-~ 219 (335)
T smart00129 149 --------PKKLEIREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNS-S 219 (335)
T ss_pred --------CCCcEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCC-C
Confidence 3579999999999999999999999999999999999999999999999999999999999998764333 2
Q ss_pred cceEEEeEEEEeeCCCCccccccCCcchhhHHHHHhhhhHHHHHHHHHHHHh--cCCCCCCcCCchhhhhhccCCCCccc
Q 003495 157 EELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVE--HLGHIPYRDSKLTRLLRDSLGGRTKT 234 (815)
Q Consensus 157 ~~~~~~skL~lVDLAGSEr~~ksga~g~r~kEa~~INkSL~aLg~VI~aL~~--~~~hIPYRdSKLTrLLqdsLGGnskT 234 (815)
......|+|+||||||+|+..+.++.+.+++|+..||+||.+|++||.+|++ +..|||||+|+||+||+++|||+++|
T Consensus 220 ~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~ 299 (335)
T smart00129 220 SGSGKASKLNLVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKT 299 (335)
T ss_pred CCCEEEEEEEEEECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeE
Confidence 3446789999999999999999999999999999999999999999999999 56799999999999999999999999
Q ss_pred ceEEecCCCCCChHhHHHHHHHHHHhhccccchhh
Q 003495 235 CIIATVSPAVHCLEETLSTLDYAHRAKNIKNKPEV 269 (815)
Q Consensus 235 ~~IatISP~~~~~eETlsTL~fA~rak~Ikn~p~v 269 (815)
+||+||||...+++||++||+||.++++|+|+|.+
T Consensus 300 ~~i~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~~ 334 (335)
T smart00129 300 LMIANISPSLSNLEETLSTLRFASRAKEIKNKAIV 334 (335)
T ss_pred EEEEEcCCCccchHHHHHHHHHHHHHhhcccCCCc
Confidence 99999999999999999999999999999999964
No 25
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.6e-54 Score=485.28 Aligned_cols=258 Identities=37% Similarity=0.568 Sum_probs=232.7
Q ss_pred CCCCCCcceEEEeeccCCCCCCCC-----CCCCcHHHHHHHHHHHhhh--------------------------------
Q 003495 5 HEKEKGVNVQLCSMRQSGPNGELP-----PEAGVIPRAVQQIFDTLES-------------------------------- 47 (815)
Q Consensus 5 ~~~~~GyN~~I~ayGqTGSGkt~t-----~~~GIIPRal~~LF~~i~~-------------------------------- 47 (815)
-+.+.|-|..+|+||-|||||||| .++||+||++.-||..|+.
T Consensus 108 ~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lkr~~ 187 (809)
T KOG0247|consen 108 KDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLKREA 187 (809)
T ss_pred HHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhhhhh
Confidence 467899999999999999999996 6789999999999987632
Q ss_pred ----------------------------------CCCceEEEEeEEEEEcccccccCCCcchhhhhhhhhccC-ccceee
Q 003495 48 ----------------------------------QNAEYSVKVTFLELYNEEITDLLAPDEISRAAVEDKQKK-QLPLME 92 (815)
Q Consensus 48 ----------------------------------~~~~~sV~vS~lEIYnE~V~DLL~~~~~~~~~~~~~~~k-~L~i~e 92 (815)
.+..|+|+|||+|||||-|||||.+.+. .+.+. -..+++
T Consensus 188 ~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~------q~~~~~~~ll~~ 261 (809)
T KOG0247|consen 188 MLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASF------QGKLQKLKLLRE 261 (809)
T ss_pred ccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccc------cchhhhhhhhhh
Confidence 0124899999999999999999987642 11222 367889
Q ss_pred cCCCCeEecCcEEEEecCHHHHHHHhHhhhhccccccccccCCCCCCeeEEEEEEEEeecCCCCcceEEEeEEEEeeCCC
Q 003495 93 DGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIKEATPEGEELIKCGKLNLVDLAG 172 (815)
Q Consensus 93 d~~~gv~V~gLtev~V~S~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~skL~lVDLAG 172 (815)
|.++..||.|+++|+|.|.+|++++|..|.++|+.++|.+|..|||||+||+|.|.+..... +...++.|.|.||||||
T Consensus 262 d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~-~s~~i~vSqlsLvDLAG 340 (809)
T KOG0247|consen 262 DTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQ-DSNQITVSQLSLVDLAG 340 (809)
T ss_pred ccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeeccccc-ccCceeEEeeeeeeccc
Confidence 99999999999999999999999999999999999999999999999999999998766553 44567899999999999
Q ss_pred CccccccCCcchhhHHHHHhhhhHHHHHHHHHHHHhc-----CCCCCCcCCchhhhhhccCCCCcccceEEecCCCCCCh
Q 003495 173 SENISRSGAREGRAREAGEINKSLLTLGRVINALVEH-----LGHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCL 247 (815)
Q Consensus 173 SEr~~ksga~g~r~kEa~~INkSL~aLg~VI~aL~~~-----~~hIPYRdSKLTrLLqdsLGGnskT~~IatISP~~~~~ 247 (815)
|||..++++.|.|++||++||.||++||+||.+|..+ +.+|||||||||++++.+|.|+.+.+||+||+|...+|
T Consensus 341 SERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~Y 420 (809)
T KOG0247|consen 341 SERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDY 420 (809)
T ss_pred chhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhH
Confidence 9999999999999999999999999999999999874 35899999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhhccccchhh
Q 003495 248 EETLSTLDYAHRAKNIKNKPEV 269 (815)
Q Consensus 248 eETlsTL~fA~rak~Ikn~p~v 269 (815)
+|+++.|+||..|..|.+.+.+
T Consensus 421 dEnl~vlkFaeiaq~v~v~~~~ 442 (809)
T KOG0247|consen 421 DENLNVLKFAEIAQEVEVARPV 442 (809)
T ss_pred HHHHHHHHHHHhcccccccCcc
Confidence 9999999999999999877765
No 26
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=6.9e-54 Score=468.20 Aligned_cols=248 Identities=48% Similarity=0.745 Sum_probs=231.4
Q ss_pred CCCCCCCcceEEEeeccCCCCCCCC-----CCCCcHHHHHHHHHHHhhhC---CCceEEEEeEEEEEcccccccCCCcch
Q 003495 4 RHEKEKGVNVQLCSMRQSGPNGELP-----PEAGVIPRAVQQIFDTLESQ---NAEYSVKVTFLELYNEEITDLLAPDEI 75 (815)
Q Consensus 4 l~~~~~GyN~~I~ayGqTGSGkt~t-----~~~GIIPRal~~LF~~i~~~---~~~~sV~vS~lEIYnE~V~DLL~~~~~ 75 (815)
++.+++|+|+|||+||++|+||||+ .++|||||++++||..+... +..|.|++||+|||+|.|+|||++..
T Consensus 71 v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~- 149 (328)
T cd00106 71 VESVLEGYNGTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEP- 149 (328)
T ss_pred HHHHhCCCceeEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCC-
Confidence 4678999999999999999999996 67999999999999999765 46899999999999999999999752
Q ss_pred hhhhhhhhccCccceeecCCCCeEecCcEEEEecCHHHHHHHhHhhhhccccccccccCCCCCCeeEEEEEEEEeecCCC
Q 003495 76 SRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIKEATPE 155 (815)
Q Consensus 76 ~~~~~~~~~~k~L~i~ed~~~gv~V~gLtev~V~S~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~V~~~~~~~~ 155 (815)
.+.++.+++|+.++++|.|++++.|.|++|++.+|..|..+|.++.|.+|..|||||+||+|.|........
T Consensus 150 --------~~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~ 221 (328)
T cd00106 150 --------PSKPLSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTND 221 (328)
T ss_pred --------CCCCcEEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCC
Confidence 246899999999999999999999999999999999999999999999999999999999999988765443
Q ss_pred CcceEEEeEEEEeeCCCCccccccCCcchhhHHHHHhhhhHHHHHHHHHHHHhcC--CCCCCcCCchhhhhhccCCCCcc
Q 003495 156 GEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHL--GHIPYRDSKLTRLLRDSLGGRTK 233 (815)
Q Consensus 156 ~~~~~~~skL~lVDLAGSEr~~ksga~g~r~kEa~~INkSL~aLg~VI~aL~~~~--~hIPYRdSKLTrLLqdsLGGnsk 233 (815)
.. ....|+|+||||||||+..+.+..+.+.+|+..||+||.+|++||.+|+.+. .|||||+||||+||+|+|||+++
T Consensus 222 ~~-~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~ 300 (328)
T cd00106 222 GR-SIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSK 300 (328)
T ss_pred Cc-cEEEEEEEEEECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCe
Confidence 22 3578999999999999999999999999999999999999999999999988 99999999999999999999999
Q ss_pred cceEEecCCCCCChHhHHHHHHHHHHhh
Q 003495 234 TCIIATVSPAVHCLEETLSTLDYAHRAK 261 (815)
Q Consensus 234 T~~IatISP~~~~~eETlsTL~fA~rak 261 (815)
|+||+||||...+++||++||+||.|||
T Consensus 301 t~~I~~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 301 TLMIANISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred EEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999986
No 27
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=9.8e-51 Score=471.52 Aligned_cols=255 Identities=47% Similarity=0.707 Sum_probs=237.1
Q ss_pred CCCCCCCcceEEEeeccCCCCCCCC-----CCCCcHHHHHHHHHHHhhhCC--CceEEEEeEEEEEcccccccCCCcchh
Q 003495 4 RHEKEKGVNVQLCSMRQSGPNGELP-----PEAGVIPRAVQQIFDTLESQN--AEYSVKVTFLELYNEEITDLLAPDEIS 76 (815)
Q Consensus 4 l~~~~~GyN~~I~ayGqTGSGkt~t-----~~~GIIPRal~~LF~~i~~~~--~~~sV~vS~lEIYnE~V~DLL~~~~~~ 76 (815)
++.++.|||+|||+||+||+||||+ ..+||||+++.+||+.++... ..|.|.|||+|||||+++|||.|...
T Consensus 82 ~~~~l~g~N~TvfayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~- 160 (568)
T COG5059 82 IDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEE- 160 (568)
T ss_pred HHHHHhcccceEEEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCccc-
Confidence 4678999999999999999999996 689999999999999997654 78999999999999999999998641
Q ss_pred hhhhhhhccCccceeecCCCCeEecCcEEEEecCHHHHHHHhHhhhhccccccccccCCCCCCeeEEEEEEEEeecCCCC
Q 003495 77 RAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIKEATPEG 156 (815)
Q Consensus 77 ~~~~~~~~~k~L~i~ed~~~gv~V~gLtev~V~S~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~V~~~~~~~~~ 156 (815)
.+.++++..++++|.|+++..|.+.+|++.+|..|..+|+++.|.+|..|||||+||++++.......+.
T Consensus 161 ----------~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~~ 230 (568)
T COG5059 161 ----------SLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGT 230 (568)
T ss_pred ----------cccccccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCccc
Confidence 2778999999999999999999999999999999999999999999999999999999999877654432
Q ss_pred cceEEEeEEEEeeCCCCccccccCCcchhhHHHHHhhhhHHHHHHHHHHHHh--cCCCCCCcCCchhhhhhccCCCCccc
Q 003495 157 EELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVE--HLGHIPYRDSKLTRLLRDSLGGRTKT 234 (815)
Q Consensus 157 ~~~~~~skL~lVDLAGSEr~~ksga~g~r~kEa~~INkSL~aLg~VI~aL~~--~~~hIPYRdSKLTrLLqdsLGGnskT 234 (815)
...++|+||||||||++.++++.+.|++|+..||+||++||+||++|.. +..|||||+|||||+|+++|||+|+|
T Consensus 231 ---~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~ 307 (568)
T COG5059 231 ---SETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNT 307 (568)
T ss_pred ---eecceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccE
Confidence 2337999999999999999999999999999999999999999999997 78899999999999999999999999
Q ss_pred ceEEecCCCCCChHhHHHHHHHHHHhhccccchhhhhh
Q 003495 235 CIIATVSPAVHCLEETLSTLDYAHRAKNIKNKPEVYAA 272 (815)
Q Consensus 235 ~~IatISP~~~~~eETlsTL~fA~rak~Ikn~p~v~~~ 272 (815)
++||||+|...++++|.+||+||.||++|+|+|.++..
T Consensus 308 ~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~ 345 (568)
T COG5059 308 RVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSS 345 (568)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCc
Confidence 99999999999999999999999999999999988753
No 28
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.3e-51 Score=450.20 Aligned_cols=242 Identities=39% Similarity=0.595 Sum_probs=219.9
Q ss_pred CCCCcceEEEeeccCCCCCCCCC-----------CCCcHHHHHHHHHHHhhhCC---CceEEEEeEEEEEcccccccCCC
Q 003495 7 KEKGVNVQLCSMRQSGPNGELPP-----------EAGVIPRAVQQIFDTLESQN---AEYSVKVTFLELYNEEITDLLAP 72 (815)
Q Consensus 7 ~~~GyN~~I~ayGqTGSGkt~t~-----------~~GIIPRal~~LF~~i~~~~---~~~sV~vS~lEIYnE~V~DLL~~ 72 (815)
.|+|--.++|||||||||||||- ..||--.+.+++|-.+.... ..+.|+|||+|||+.+|||||++
T Consensus 287 IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~ 366 (676)
T KOG0246|consen 287 IFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLND 366 (676)
T ss_pred HHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhcc
Confidence 47888899999999999999973 46999999999999997643 47999999999999999999985
Q ss_pred cchhhhhhhhhccCccceeecCCCCeEecCcEEEEecCHHHHHHHhHhhhhccccccccccCCCCCCeeEEEEEEEEeec
Q 003495 73 DEISRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIKEA 152 (815)
Q Consensus 73 ~~~~~~~~~~~~~k~L~i~ed~~~gv~V~gLtev~V~S~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~V~~~~~ 152 (815)
++.|.++||++..|.|-||.|..|.+.+|++.+|+.|+.-|.++.|..|..|||||+||+|.+...
T Consensus 367 ------------k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~-- 432 (676)
T KOG0246|consen 367 ------------KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKH-- 432 (676)
T ss_pred ------------ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecC--
Confidence 457999999999999999999999999999999999999999999999999999999999999632
Q ss_pred CCCCcceEEEeEEEEeeCCCCccccc-cCCcchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCcCCchhhhhhccCCC-
Q 003495 153 TPEGEELIKCGKLNLVDLAGSENISR-SGAREGRAREAGEINKSLLTLGRVINALVEHLGHIPYRDSKLTRLLRDSLGG- 230 (815)
Q Consensus 153 ~~~~~~~~~~skL~lVDLAGSEr~~k-sga~g~r~kEa~~INkSL~aLg~VI~aL~~~~~hIPYRdSKLTrLLqdsLGG- 230 (815)
++ ....||+.||||||+||... +.+..+...||..|||||++|-.||+||...++|+|||.||||.+|+|||=|
T Consensus 433 ---~~-~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGe 508 (676)
T KOG0246|consen 433 ---GE-FKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQVLRDSFIGE 508 (676)
T ss_pred ---Cc-ceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCC
Confidence 11 23579999999999999854 4455566789999999999999999999999999999999999999999988
Q ss_pred CcccceEEecCCCCCChHhHHHHHHHHHHhhccccc
Q 003495 231 RTKTCIIATVSPAVHCLEETLSTLDYAHRAKNIKNK 266 (815)
Q Consensus 231 nskT~~IatISP~~~~~eETlsTL~fA~rak~Ikn~ 266 (815)
|++||||+||||+..+++.||+||+||.|.|.+...
T Consensus 509 nSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~ 544 (676)
T KOG0246|consen 509 NSRTCMIATISPGISSCEHTLNTLRYADRVKELSVD 544 (676)
T ss_pred CCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999997543
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=4.9e-42 Score=347.21 Aligned_cols=166 Identities=49% Similarity=0.712 Sum_probs=155.7
Q ss_pred CCCCCCCcceEEEeeccCCCCCCCC-----CCCCcHHHHHHHHHHHhhhCCCceEEEEeEEEEEcccccccCCCcchhhh
Q 003495 4 RHEKEKGVNVQLCSMRQSGPNGELP-----PEAGVIPRAVQQIFDTLESQNAEYSVKVTFLELYNEEITDLLAPDEISRA 78 (815)
Q Consensus 4 l~~~~~GyN~~I~ayGqTGSGkt~t-----~~~GIIPRal~~LF~~i~~~~~~~sV~vS~lEIYnE~V~DLL~~~~~~~~ 78 (815)
++.+++|||+|||+||++|+||||+ .++|||||++++
T Consensus 16 v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~-------------------------------------- 57 (186)
T cd01363 16 LQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD-------------------------------------- 57 (186)
T ss_pred HHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH--------------------------------------
Confidence 4567899999999999999999996 578999999988
Q ss_pred hhhhhccCccceeecCCCCeEecCcEEEEecCHHHHHHHhHhhhhccccccccccCCCCCCeeEEEEEEEEeecCCCCcc
Q 003495 79 AVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIKEATPEGEE 158 (815)
Q Consensus 79 ~~~~~~~k~L~i~ed~~~gv~V~gLtev~V~S~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~V~~~~~~~~~~~ 158 (815)
++.+|..|.++|.++.|.+|..|||||+||+|+|........+..
T Consensus 58 -----------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~~~~ 102 (186)
T cd01363 58 -----------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALASATE 102 (186)
T ss_pred -----------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCCCcc
Confidence 788999999999999999999999999999999998776554445
Q ss_pred eEEEeEEEEeeCCCCccccccCCcchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCcCCchhhhhhccCCCCcccceEE
Q 003495 159 LIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHLGHIPYRDSKLTRLLRDSLGGRTKTCIIA 238 (815)
Q Consensus 159 ~~~~skL~lVDLAGSEr~~ksga~g~r~kEa~~INkSL~aLg~VI~aL~~~~~hIPYRdSKLTrLLqdsLGGnskT~~Ia 238 (815)
....|+|+||||||||+..++++.+.+++|+..||+||.+|++||.+|+++..|||||+||||+||+|+|||||+|+||+
T Consensus 103 ~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~~~L~g~~~t~~i~ 182 (186)
T cd01363 103 QPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTRLLQDSLGGNSRTLMVA 182 (186)
T ss_pred ceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHhcCCCCeEEEEE
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 003495 239 TVSP 242 (815)
Q Consensus 239 tISP 242 (815)
||||
T Consensus 183 ~vsP 186 (186)
T cd01363 183 CISP 186 (186)
T ss_pred EeCc
Confidence 9999
No 30
>PF13931 Microtub_bind: Kinesin-associated microtubule-binding
Probab=98.64 E-value=1.6e-08 Score=98.12 Aligned_cols=41 Identities=39% Similarity=0.521 Sum_probs=37.7
Q ss_pred hcccCCcCCCCcccccCCCCcchhhhccCCchHHHHHHHhhcCCC
Q 003495 749 YMDYEHTGTTPTRCESEVPSKGTIESLRAMPMETLLEEFRENNSY 793 (815)
Q Consensus 749 Y~~~~ptg~TP~k~~~~~ps~~sIe~~rt~~~e~ll~~~r~~~~~ 793 (815)
.++|.|||+||+|+.|.||+.+ |||.||+.||.+||.....
T Consensus 2 l~~~~pTG~TP~rk~y~YP~~L----~~T~ph~~ll~~~r~~~~~ 42 (143)
T PF13931_consen 2 LKEYVPTGTTPQRKEYQYPRTL----PRTEPHERLLRRLREEQEE 42 (143)
T ss_pred CccccCCCCCCCcccccCCCcc----CCCCcHHHHHHHHHhccch
Confidence 3567999999999999999999 9999999999999988774
No 31
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=98.57 E-value=0.0067 Score=74.90 Aligned_cols=213 Identities=12% Similarity=0.073 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhccchHHHHHHHHHHHHhhh----hhhhchhhhhhh-HhHhHHHHHHHHhhhh
Q 003495 560 LVEARLVDFRENAVSSKLFLDGHASSVEGITTDAKRKWQAFAMQADN----DAKDGADHSSAK-HCRMELLLQECVNSGE 634 (815)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~l~~~~~~mq~~t~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~e~~l~~~~~~~~ 634 (815)
=+...+..+-.........+.+..+.|+.-... ....+. ++.+-..++... +.-+...++.-..+..
T Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~e~~~~~~q~~~e~~~~~~~~~~~~~~ 797 (1041)
T KOG0243|consen 726 TLDNQAEKLTNLFSEANISLSQKLSSFQKKFES--------IAEDEKQLVEDIKELLSSHDQRNNELLDIALQTLRSAVN 797 (1041)
T ss_pred HHHHHHHHHhhhHHHhhHHHHHHHHHHhhhHHh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444444444555555555555554332222 111222 223333333222 3333333344444444
Q ss_pred hhhhhhHHHHHHHHHhhhhHHHhHHHHHHHHhhhhhHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhHHHHHHHHHhHHH
Q 003495 635 SAFGHWKRTYESVNEMESKHVSSMISLTRNASYSNEQHDVEVDTARVATEEEVAKSSEDALQLIASASEQEQASIAEVLD 714 (815)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 714 (815)
....-+......|.+|...--.... ....+|+.|+....++....-.........+...++......+.+...+.+
T Consensus 798 ~~~~~~~e~~~~~~~l~~~~k~~~~----~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~ 873 (1041)
T KOG0243|consen 798 SRESNLTESVSVMQNLSDDLKTIWQ----TLGKQNENHHNEVLSAIEEKQQAMKSVLKELLENAESQVDECKEAIESLKS 873 (1041)
T ss_pred cchhHHHHhhHHHhhhhHHHHHHHH----HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444422222222 233467778888888877777777777777777777777777777766666
Q ss_pred hHHHHHHhHHHHhhhhhc-----------chHHHHHHHHHHHHhhhcccCCcCCCCcccccCCCCcchhhhccCCchHHH
Q 003495 715 DVKAHEKTINLFRESHSA-----------QSASIKEKAQETFQQRYMDYEHTGTTPTRCESEVPSKGTIESLRAMPMETL 783 (815)
Q Consensus 715 ~~~~~~~~l~~l~~~~~~-----------~~~~i~~~~~~~~~~eY~~~~ptg~TP~k~~~~~ps~~sIe~~rt~~~e~l 783 (815)
........+..|-.+.+. ++...-.........- +.|++.+|....+.+|... -++.|+..+
T Consensus 874 ~~~~~~~~~~~l~~~~~~~~~k~~~e~~s~~~~~~~~~~~~~~~i---~t~~~~~~~~~~~~~~~t~----~~~~~~~~~ 946 (1041)
T KOG0243|consen 874 LESNHVATLDSLVRGVSEQNKKLQDEFLSLLNSKLNSFDVLTNSI---VTPHSILLKLDDDVLPETL----VIISPSLEL 946 (1041)
T ss_pred HHhccchHHHHHHhhhhhhhHHhhHHHHHHHhHHHhhhhhccccc---cccccccccccccccccch----HhhcccHHH
Confidence 655555555555433333 3333333333333333 4999999999999999999 677777778
Q ss_pred HHHHhhcC
Q 003495 784 LEEFRENN 791 (815)
Q Consensus 784 l~~~r~~~ 791 (815)
+..++.++
T Consensus 947 ~~~l~~~~ 954 (1041)
T KOG0243|consen 947 LGELFQDL 954 (1041)
T ss_pred HHHhhccc
Confidence 77777744
No 32
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.95 E-value=3 Score=56.05 Aligned_cols=56 Identities=11% Similarity=0.072 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHhhhhhhhchhhhhhhHhHhHHHHHHHHhhhhhhhhhhHHHHHH
Q 003495 591 TDAKRKWQAFAMQADNDAKDGADHSSAKHCRMELLLQECVNSGESAFGHWKRTYES 646 (815)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~ 646 (815)
+.+..++..|..+.+.......--.++.|.++..-++.+-...+........-.++
T Consensus 1353 sk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~ 1408 (1930)
T KOG0161|consen 1353 SKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKA 1408 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44888899999999977776667777778887777777766666655555544444
No 33
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.62 E-value=12 Score=49.12 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=11.1
Q ss_pred cHHHHHHHHHHHhhhCCCceEEEEe
Q 003495 33 VIPRAVQQIFDTLESQNAEYSVKVT 57 (815)
Q Consensus 33 IIPRal~~LF~~i~~~~~~~sV~vS 57 (815)
+.|.....++..+...+..|+=.++
T Consensus 118 ~~~~~~~e~~r~~~~~gv~~S~~i~ 142 (1201)
T PF12128_consen 118 VQALSMWELIRELRRKGVQVSRKIT 142 (1201)
T ss_pred cccccHHHHHHHHHhCCCeeecCcC
Confidence 3444444444444444444444433
No 34
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.28 E-value=13 Score=47.38 Aligned_cols=91 Identities=10% Similarity=0.081 Sum_probs=43.0
Q ss_pred HHHHHHHHhhhhHHHhHHHHHHHHhhhhhHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhHHHHHHHHHhHHH---hHHH
Q 003495 642 RTYESVNEMESKHVSSMISLTRNASYSNEQHDVEVDTARVATEEEVAKSSEDALQLIASASEQEQASIAEVLD---DVKA 718 (815)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~v~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~ 718 (815)
.+...++.|+ ...+.++.++.+-.+.+....++- +.+....+.++..-...+++..++.-..+. ....
T Consensus 1658 ~a~q~~~~lq-~~~~~~~~l~~~r~~g~~~ar~rA--------e~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~ 1728 (1758)
T KOG0994|consen 1658 SAEQGLEILQ-KYYELVDRLLEKRMEGSQAARERA--------EQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALED 1728 (1758)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhhcchhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3333355544 666666666666555554444332 233333334444444444444444322222 2333
Q ss_pred HHHhHHHHhhhhhcchHHHHHHH
Q 003495 719 HEKTINLFRESHSAQSASIKEKA 741 (815)
Q Consensus 719 ~~~~l~~l~~~~~~~~~~i~~~~ 741 (815)
....|..|...+.+-+..|.+.+
T Consensus 1729 ~~aeL~~Le~r~~~vl~~I~~rv 1751 (1758)
T KOG0994|consen 1729 KAAELAGLEKRVESVLDHINERV 1751 (1758)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhh
Confidence 34456666665555555554443
No 35
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.95 E-value=25 Score=44.89 Aligned_cols=108 Identities=15% Similarity=0.154 Sum_probs=57.5
Q ss_pred HHHcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc--H
Q 003495 459 LQTTLSTQQGEMAIFAREMRQRFQVTIERTKDIAEYTNGFLQKLLEESKSLENYAVQADENQMKSIADFQKAYEDQT--K 536 (815)
Q Consensus 459 l~~~l~~q~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~~ff~~l~~~a~~l~~~~~~~~~~~~~~l~~~~~~~~~~~--~ 536 (815)
+.--|+.-+..+++-+.-+.+|....- --.++...+..+.+.|++.+..+. ..+++-+... -
T Consensus 1530 Vd~IL~~T~~di~ra~~L~s~A~~a~~------------~A~~v~~~ae~V~eaL~~Ad~Aq~----~a~~ai~~a~~~~ 1593 (1758)
T KOG0994|consen 1530 VDAILSRTKGDIARAENLQSEAERARS------------RAEDVKGQAEDVVEALEEADVAQG----EAQDAIQGADRDI 1593 (1758)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHh------------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHH
Confidence 333444555556555544444433221 123444555666666666543322 2222222222 2
Q ss_pred HHHHHHHHHHHHH------HHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 003495 537 SDTEKLIADVTSL------VSSHMRRQTELVEARLVDFRENAVSSKLFLDGH 582 (815)
Q Consensus 537 ~e~~~l~~~i~~l------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 582 (815)
+.-+++|++|.+- .+.++..|-.-|..+|..|+-.++++...-+.+
T Consensus 1594 ~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a 1645 (1758)
T KOG0994|consen 1594 RLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQA 1645 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3456777777553 445667777778888888888877766544433
No 36
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=93.36 E-value=0.00091 Score=79.46 Aligned_cols=176 Identities=30% Similarity=0.290 Sum_probs=106.2
Q ss_pred EEeeccCCCCCCCC---CCCCcHHHHHHHHHHHhhh---CCCceEEEEeEEEEEcccccccCCCcchhhhhhhhhccCcc
Q 003495 15 LCSMRQSGPNGELP---PEAGVIPRAVQQIFDTLES---QNAEYSVKVTFLELYNEEITDLLAPDEISRAAVEDKQKKQL 88 (815)
Q Consensus 15 I~ayGqTGSGkt~t---~~~GIIPRal~~LF~~i~~---~~~~~sV~vS~lEIYnE~V~DLL~~~~~~~~~~~~~~~k~L 88 (815)
+++|++++.+.+.+ ...++.+-.+...|..+.. ..+.|...+-++++|-..+.+++......... ......
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~---~~~~~~ 461 (568)
T COG5059 385 IFAYMQSLKKETETLKSRIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLREEELSKKKT---KIHKLN 461 (568)
T ss_pred HHHHHhhhhhhhhcccchhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHH---HHHHHH
Confidence 67899999888764 4566666666888887653 34556666666777622222222211100000 000000
Q ss_pred ceeecCCCCeEecCcEEEEecCHHHHHHHhHhhhhccccccccccCCCCCCeeEEEEEEEEeecCCCCcceEEEeEEEEe
Q 003495 89 PLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIKEATPEGEELIKCGKLNLV 168 (815)
Q Consensus 89 ~i~ed~~~gv~V~gLtev~V~S~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~skL~lV 168 (815)
.++.+ .+.-++ .......+..... .....+..+.+..|..++|+|++|........... +. . .++.|
T Consensus 462 ~~~~~-----~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~~-~----~~n~~ 528 (568)
T COG5059 462 KLRHD-----LSSLLS-SIPEETSDRVESE-KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSST-KE-L----SLNQV 528 (568)
T ss_pred HHHHH-----HHHhhh-hcchhhhhhhhhh-hhccchhhcccchhhhhcccchhhhhcccchhhhh-HH-H----Hhhhh
Confidence 00000 000011 1111111111111 45677888999999999999999977654222111 11 1 17999
Q ss_pred eCCCCccccccCCcchhhHHHHHhhhhHHHHHHHHHHHH
Q 003495 169 DLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALV 207 (815)
Q Consensus 169 DLAGSEr~~ksga~g~r~kEa~~INkSL~aLg~VI~aL~ 207 (815)
||||+|+. -+...+.++++...+|++|..+|.+|.++.
T Consensus 529 ~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 529 DLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred hccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 99999999 999999999999999999999999998764
No 37
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=93.16 E-value=14 Score=39.55 Aligned_cols=147 Identities=11% Similarity=0.159 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 003495 410 EAVQNVVRLHKACSNANLEEISAFASSNSESIKEFLASEAREAASIYENLQTTLSTQQGEMAIFAREMRQRFQVTIERTK 489 (815)
Q Consensus 410 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~q~~~~~~~~~q~~~~~~~~~~~~~ 489 (815)
..+.++.+.+.+......+.+...+......+..+-..+..+-...-.++......-..++..|..-+..--..-+
T Consensus 70 ~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~---- 145 (247)
T PF06705_consen 70 EQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNERE---- 145 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3344444444444444444444444444444444444444443333333333333333333333333332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcHHH-------HHHHHHHHHHHHHHhHHHHHHHHH
Q 003495 490 DIAEYTNGFLQKLLEESKSLENYAVQADENQMKSIADFQKAYEDQTKSD-------TEKLIADVTSLVSSHMRRQTELVE 562 (815)
Q Consensus 490 ~~s~~~~~ff~~l~~~a~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~e-------~~~l~~~i~~l~~~~~~~~~~~~~ 562 (815)
+.-...++.|.++..++...++.+-......+.++....++.-... +..+++.|++|-+.......+|..
T Consensus 146 ---erE~~i~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~e~~~R~~ 222 (247)
T PF06705_consen 146 ---EREENILKRLEEEENRLQEKIEKEKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALALESQEREQ 222 (247)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2234567888888999999999998887788877777666554433 234777788777777777766654
Q ss_pred H
Q 003495 563 A 563 (815)
Q Consensus 563 ~ 563 (815)
.
T Consensus 223 ~ 223 (247)
T PF06705_consen 223 S 223 (247)
T ss_pred h
Confidence 3
No 38
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=92.54 E-value=45 Score=43.82 Aligned_cols=41 Identities=20% Similarity=0.224 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhccchHHHHHHHHHHH
Q 003495 555 RRQTELVEARLVDFRENAVSSKLFLDGHASSVEGITTDAKRKWQAFAM 602 (815)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~mq~~t~~~~~~~~~~~~ 602 (815)
.++..-+..++..|.........+|.+=+.. ...+|..-.+
T Consensus 517 ~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~-------~~p~We~tIG 557 (1201)
T PF12128_consen 517 RRELEELRAQIAELQRQLDPQKGSLLEFLRK-------NKPGWEQTIG 557 (1201)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHh-------CCCcHHHHhH
Confidence 4455556677777777776666666665554 5666766655
No 39
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=91.91 E-value=14 Score=36.61 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=6.3
Q ss_pred HHHHHHHhhchhHHHHH
Q 003495 428 EEISAFASSNSESIKEF 444 (815)
Q Consensus 428 ~~~~~~~~~~~~~~~~~ 444 (815)
+++...+......+...
T Consensus 103 ~~~~~~~~~~~~~~~~~ 119 (202)
T PF01442_consen 103 EELESRLEEEVDELEES 119 (202)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 40
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=91.83 E-value=65 Score=44.07 Aligned_cols=54 Identities=6% Similarity=0.079 Sum_probs=29.3
Q ss_pred HHHHHHHhHHHHHHHHHhHHHhHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHh
Q 003495 694 ALQLIASASEQEQASIAEVLDDVKAHEKTINLFRESHSAQSASIKEKAQETFQQ 747 (815)
Q Consensus 694 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~~~~~~~~ 747 (815)
+..++...-....+.+..+.+....+.+.++..+....+.+..+.+.++-....
T Consensus 1348 l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~ 1401 (1930)
T KOG0161|consen 1348 LERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAK 1401 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 333444444445555555666666655666666655555666665555544443
No 41
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=91.59 E-value=34 Score=40.30 Aligned_cols=85 Identities=15% Similarity=0.173 Sum_probs=53.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhHHHHHHHHHhHHHhHHHHHHhHHHHhhhhhcchHHHH
Q 003495 659 ISLTRNASYSNEQHDVEVDTARVATEEEVAKSSEDALQLIASASEQEQASIAEVLDDVKAHEKTINLFRESHSAQSASIK 738 (815)
Q Consensus 659 ~~~v~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~ 738 (815)
..+|.......+...+.+..+....+........++...+......-......+..+-..+...|......|..-.....
T Consensus 311 ~plv~~~q~~~e~~le~l~~~~E~~a~~~~~~~~~L~~f~~~~~~lwd~h~~~l~~~e~~l~~~l~~~r~~~~~~~q~~E 390 (473)
T PF14643_consen 311 LPLVGELQSEFEEELEKLDKSFEELAKQTEAQSEDLFKFFQEAAQLWDEHRKKLSKQEEELEKRLEQCREKHDQENQEKE 390 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45555666666666677777777777777777777776666666666666666666666666666666666655555555
Q ss_pred HHHHH
Q 003495 739 EKAQE 743 (815)
Q Consensus 739 ~~~~~ 743 (815)
.+...
T Consensus 391 ~~Ld~ 395 (473)
T PF14643_consen 391 AKLDI 395 (473)
T ss_pred HHHHH
Confidence 44443
No 42
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=90.03 E-value=21 Score=35.34 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=13.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 003495 548 SLVSSHMRRQTELVEARLVDFRENAVSSKLFLD 580 (815)
Q Consensus 548 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 580 (815)
.-+......-...+..++..+++.+......+.
T Consensus 140 ~~l~~~~~~~~~~i~~~~~~l~~~l~~~~~~l~ 172 (202)
T PF01442_consen 140 EELTERAEELEAKISERLEELRESLEEKAEELK 172 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444333333
No 43
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=89.89 E-value=34 Score=37.49 Aligned_cols=15 Identities=20% Similarity=0.273 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHh
Q 003495 371 EHLKHVEKLCHSLLG 385 (815)
Q Consensus 371 ~~l~~~~~~~~~~~~ 385 (815)
+.++.+..++-+|++
T Consensus 4 ~eL~~LNdRla~YIe 18 (312)
T PF00038_consen 4 EELQSLNDRLASYIE 18 (312)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445566666666665
No 44
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.83 E-value=97 Score=41.25 Aligned_cols=14 Identities=7% Similarity=-0.009 Sum_probs=11.5
Q ss_pred eEEEeeccCCCCCC
Q 003495 13 VQLCSMRQSGPNGE 26 (815)
Q Consensus 13 ~~I~ayGqTGSGkt 26 (815)
.+++-+|+.|+|||
T Consensus 29 ~~~~I~G~NGaGKT 42 (1311)
T TIGR00606 29 PLTILVGPNGAGKT 42 (1311)
T ss_pred ceEEEECCCCCCHH
Confidence 45677899999996
No 45
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=88.52 E-value=38 Score=36.24 Aligned_cols=211 Identities=13% Similarity=0.126 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhh
Q 003495 497 GFLQKLLEESKSLENYAVQADENQMKSIADFQKAYEDQTKSDTEKLIADVTSLVSSHMRRQTELVEARLVDFRENAVSSK 576 (815)
Q Consensus 497 ~ff~~l~~~a~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (815)
..|..|.....+|...++.+-.........++..|+.....=...+..++...+.... ..-.-|..++..|.+.+....
T Consensus 34 ~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~~~~~~~-~~l~~L~~ri~~L~~~i~ee~ 112 (247)
T PF06705_consen 34 QRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQISEKQEQLQ-SRLDSLNDRIEALEEEIQEEK 112 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888888888888888788888888888887777666666666665444333 444445666666666665555
Q ss_pred hhhhhhhhhhhccchHHHHHHHHHHHHhhhhhhhchhhhhhhHhHhHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHH
Q 003495 577 LFLDGHASSVEGITTDAKRKWQAFAMQADNDAKDGADHSSAKHCRMELLLQECVNSGESAFGHWKRTYESVNEMESKHVS 656 (815)
Q Consensus 577 ~~l~~~~~~mq~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (815)
..+...+. .......+.+..+....+..-..-...-..+-.+|++....--..++.....-..+.. +|. .
T Consensus 113 ~~r~~~ie---~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~~~i~~Ek~~Re~~~~---~l~----~ 182 (247)
T PF06705_consen 113 EERPQDIE---ELNQELVRELNELQEAFENERNEREEREENILKRLEEEENRLQEKIEKEKNTRESKLS---ELR----S 182 (247)
T ss_pred HHhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH----H
Confidence 55444332 2344456666666555553333333333444555544443333333322222222222 222 2
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhHHHHHHHHHhHHHhHHHHHHhHHH
Q 003495 657 SMISLTRNASYSNEQHDVEVDTARVATEEEVAKSSEDALQLIASASEQEQASIAEVLDDVKAHEKTINL 725 (815)
Q Consensus 657 ~~~~~v~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 725 (815)
.++.++......|+.++..+.. .+..--.+|..-.......|.+....|...+..+.+.|..
T Consensus 183 ~le~~~~~~~~~~e~f~~~v~~-------Ei~~lk~~l~~e~~~R~~~Dd~Iv~aln~yt~~lQ~~L~~ 244 (247)
T PF06705_consen 183 ELEEVKRRREKGDEQFQNFVLE-------EIAALKNALALESQEREQSDDDIVQALNHYTKALQDGLRI 244 (247)
T ss_pred HHHHHHHHHhhhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Confidence 3556665555666666554443 3333344444555556666667777777777777777754
No 46
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=88.27 E-value=89 Score=40.13 Aligned_cols=35 Identities=6% Similarity=0.151 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHcHHHhHHHHHHHHHHHHHHHHHH
Q 003495 450 REAASIYENLQTTLSTQQGEMAIFAREMRQRFQVT 484 (815)
Q Consensus 450 ~~~~~~~~~l~~~l~~q~~~~~~~~~q~~~~~~~~ 484 (815)
.+++.-+.+..+.+..-|..+..+..++.....+.
T Consensus 354 ~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 354 NDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566677777777777777777776666555
No 47
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=87.58 E-value=1e+02 Score=40.07 Aligned_cols=30 Identities=10% Similarity=0.139 Sum_probs=16.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 003495 551 SSHMRRQTELVEARLVDFRENAVSSKLFLDGH 582 (815)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 582 (815)
...-+++.+++...+..++.....- .|+.+
T Consensus 669 e~~~e~~lk~~q~~~eq~~~E~~~~--~L~~~ 698 (1317)
T KOG0612|consen 669 EIKLERKLKMLQNELEQENAEHHRL--RLQDK 698 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHhhH
Confidence 3445566666666666665544433 44444
No 48
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=87.57 E-value=25 Score=34.30 Aligned_cols=69 Identities=12% Similarity=0.179 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHhHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcHHHhHHH
Q 003495 390 AVIDLKKKVTASRALYCSHMEAVQNVVRLHKACSNANLEEISAFASSNSESIKEFLASEAREAASIYENLQTTLSTQQGE 469 (815)
Q Consensus 390 ~~~el~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~q~~~ 469 (815)
..+.+...+.++++.+.+..+.+..+... +...-.++-|..+....++++++|.+.+.++++.
T Consensus 53 ~ae~a~~~L~~~~~~~~~i~e~~~kl~~~-----------------~~~r~yk~eYk~llk~y~~~~~~L~k~I~~~e~i 115 (126)
T PF09403_consen 53 EAEAAEAELAELKELYAEIEEKIEKLKQD-----------------SKVRWYKDEYKELLKKYKDLLNKLDKEIAEQEQI 115 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------GGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHh-----------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777655555444332 2334467899999999999999999999999999
Q ss_pred HHHHHH
Q 003495 470 MAIFAR 475 (815)
Q Consensus 470 ~~~~~~ 475 (815)
++.|.+
T Consensus 116 I~~fe~ 121 (126)
T PF09403_consen 116 IDNFEK 121 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998865
No 49
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=86.45 E-value=82 Score=37.81 Aligned_cols=66 Identities=11% Similarity=0.148 Sum_probs=48.7
Q ss_pred HHhHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 003495 424 NANLEEISAFASSNSESIKEFLASEAREAASIYENLQTTLSTQQGEMAIFAREMRQRFQVTIERTK 489 (815)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~q~~~~~~~~~q~~~~~~~~~~~~~ 489 (815)
...++.+...+....+.++..|..-...+..++++..+....-+.++..+..|+.+.-.+-.++.+
T Consensus 69 ~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k 134 (546)
T KOG0977|consen 69 EHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEK 134 (546)
T ss_pred HHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 334455666677788889999999999999999998888887777777777777666655555433
No 50
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=85.33 E-value=98 Score=37.70 Aligned_cols=58 Identities=12% Similarity=0.106 Sum_probs=32.0
Q ss_pred HHcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003495 460 QTTLSTQQGEMAIFAREMRQRFQVTIERTKDIAEYTNGFLQKLLEESKSLENYAVQADE 518 (815)
Q Consensus 460 ~~~l~~q~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~~ff~~l~~~a~~l~~~~~~~~~ 518 (815)
|+.+|...+.+.+-=.-..+..-+... --...+.+-..|-.|+...+.|.+.+++.+.
T Consensus 518 QkeiN~l~gkL~RtF~v~dElifrdAK-kDe~~rkaYK~La~lh~~c~~Li~~v~~tG~ 575 (594)
T PF05667_consen 518 QKEINSLTGKLDRTFTVTDELIFRDAK-KDEAARKAYKLLASLHENCSQLIETVEETGT 575 (594)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 444444444444333333333322222 2234556667777888888888888888755
No 51
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=85.09 E-value=1e+02 Score=37.80 Aligned_cols=32 Identities=13% Similarity=0.170 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 003495 389 KAVIDLKKKVTASRALYCSHMEAVQNVVRLHK 420 (815)
Q Consensus 389 ~~~~el~~~~~~~~~~~~~~~~~l~~~~~~~~ 420 (815)
..++++..++..+.+.+..+++.+..++..++
T Consensus 160 ~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~ 191 (660)
T KOG4302|consen 160 EKLEELREHLNELQKEKSDRLEKVLELKEEIK 191 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999998888887665
No 52
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.48 E-value=1.9e+02 Score=38.67 Aligned_cols=41 Identities=20% Similarity=0.181 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHcHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 003495 449 AREAASIYENLQTTLSTQQGEMAIFAREMRQRFQVTIERTK 489 (815)
Q Consensus 449 ~~~~~~~~~~l~~~l~~q~~~~~~~~~q~~~~~~~~~~~~~ 489 (815)
...++.-+.+....+.....++..|.+++..++..+-..++
T Consensus 496 ~~~~~~~i~~~~~~~~~le~~~~~l~~~~~~~~~~~~~~~~ 536 (1311)
T TIGR00606 496 TETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQ 536 (1311)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666667777777777777777777776655554
No 53
>PRK11637 AmiB activator; Provisional
Probab=82.13 E-value=1.1e+02 Score=35.58 Aligned_cols=22 Identities=5% Similarity=0.172 Sum_probs=9.6
Q ss_pred HHHHHHcHHHhHHHHHHHHHHH
Q 003495 456 YENLQTTLSTQQGEMAIFAREM 477 (815)
Q Consensus 456 ~~~l~~~l~~q~~~~~~~~~q~ 477 (815)
..+|.....+++.+++.|..+.
T Consensus 207 k~~L~~~k~e~~~~l~~L~~~~ 228 (428)
T PRK11637 207 QQKLEQARNERKKTLTGLESSL 228 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 54
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=81.58 E-value=88 Score=34.29 Aligned_cols=9 Identities=33% Similarity=0.527 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 003495 561 VEARLVDFR 569 (815)
Q Consensus 561 ~~~~~~~~~ 569 (815)
+...+..||
T Consensus 167 L~~~L~eiR 175 (312)
T PF00038_consen 167 LSAALREIR 175 (312)
T ss_dssp HHHHHHHHH
T ss_pred chhhhhhHH
Confidence 333344444
No 55
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=80.80 E-value=7.3 Score=39.16 Aligned_cols=21 Identities=10% Similarity=0.069 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHcHHHhHH
Q 003495 448 EAREAASIYENLQTTLSTQQG 468 (815)
Q Consensus 448 ~~~~~~~~~~~l~~~l~~q~~ 468 (815)
|..-++.++|+.++.+.+...
T Consensus 126 l~~~~K~~~D~~~k~~~~~~~ 146 (155)
T PF07464_consen 126 LQPAIKQAYDDAVKAAQKVQK 146 (155)
T ss_dssp GHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444443
No 56
>PRK11637 AmiB activator; Provisional
Probab=80.11 E-value=1.2e+02 Score=35.05 Aligned_cols=8 Identities=13% Similarity=0.335 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 003495 541 KLIADVTS 548 (815)
Q Consensus 541 ~l~~~i~~ 548 (815)
+|-..|+.
T Consensus 244 ~L~~~I~~ 251 (428)
T PRK11637 244 RLRDSIAR 251 (428)
T ss_pred HHHHHHHH
Confidence 33333433
No 57
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=79.81 E-value=1.3e+02 Score=35.00 Aligned_cols=100 Identities=15% Similarity=0.244 Sum_probs=65.4
Q ss_pred HHHHhhhhhhhhhhHHHHHHHHHhhhhHHHhHHHHHHHHhhhhhHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhHHHHH
Q 003495 627 QECVNSGESAFGHWKRTYESVNEMESKHVSSMISLTRNASYSNEQHDVEVDTARVATEEEVAKSSEDALQLIASASEQEQ 706 (815)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 706 (815)
.+.+.....-...|......+.. .+..++++.. .=..|..+|.+++-=+. |-+
T Consensus 307 ~~yl~~~~~~~~~~~~~~~~i~~----~~~~l~~L~~-------------------~Y~~F~~aY~~LL~Ev~----RRr 359 (412)
T PF04108_consen 307 PSYLAAFHDFEERWEEEKESIQA----YIDELEQLCE-------------------FYEGFLSAYDSLLLEVE----RRR 359 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH-------------------HHHHHHHHHHHHHHHHH----HHH
Confidence 55556666666667666665333 2333332221 22345567777664333 455
Q ss_pred HHHHhHHHhHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHhhhcccCCcCCCCcc
Q 003495 707 ASIAEVLDDVKAHEKTINLFRESHSAQSASIKEKAQETFQQRYMDYEHTGTTPTR 761 (815)
Q Consensus 707 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~~~~~~~~eY~~~~ptg~TP~k 761 (815)
.....|...+..+.+.|..|.+. .....+.|..+|=+|-|+--=|..
T Consensus 360 ~~~~k~~~i~~~~~eeL~~l~ee--------E~~~Re~F~~e~GdyLP~diwpg~ 406 (412)
T PF04108_consen 360 AVRDKMKKIIREANEELDKLREE--------EQRRREAFLKEYGDYLPEDIWPGM 406 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHccCcCChhhCCCc
Confidence 66888999999999999999864 455788999999999998655543
No 58
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=79.18 E-value=93 Score=33.14 Aligned_cols=105 Identities=14% Similarity=0.134 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHhH---HHHHHHHhhchhHHHHHHHHHHHHHHHH---HHHH
Q 003495 386 IHEKAVIDLKKKVTASRALYCSHMEAVQNVVRLHKACSNANL---EEISAFASSNSESIKEFLASEAREAASI---YENL 459 (815)
Q Consensus 386 ~~~~~~~el~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l 459 (815)
...+.+..|+.++..++......-..+..+...+.. +...+ +.=...+.+.+..|..-+..++..++++ ....
T Consensus 89 ~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~-~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~ 167 (237)
T PF00261_consen 89 SDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKV-LEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKA 167 (237)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 334455566666665555444444444433333331 11222 2222333344555556666666655554 2333
Q ss_pred HHcHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003495 460 QTTLSTQQGEMAIFAREMRQRFQVTIERTKDI 491 (815)
Q Consensus 460 ~~~l~~q~~~~~~~~~q~~~~~~~~~~~~~~~ 491 (815)
......-...+..|..++.++-.|+=.+=+.+
T Consensus 168 ~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v 199 (237)
T PF00261_consen 168 SEREDEYEEKIRDLEEKLKEAENRAEFAERRV 199 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455667777777777766655544433
No 59
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=79.06 E-value=2.2e+02 Score=37.44 Aligned_cols=290 Identities=13% Similarity=0.148 Sum_probs=136.5
Q ss_pred HHHHHHHHHHcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 003495 452 AASIYENLQTTLSTQQGEMAIFAREMRQRFQVTIERTKDIAEYTNGFLQKLLEESKSLENYAVQADENQMKSIADFQKAY 531 (815)
Q Consensus 452 ~~~~~~~l~~~l~~q~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~~ff~~l~~~a~~l~~~~~~~~~~~~~~l~~~~~~~ 531 (815)
+..-..++...+.....++..+..++.+...+.-..-..+....-.. ..+......+...... ....+.+++.++
T Consensus 728 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~l~~~~~~~~~~~~~----~~~~~~~~~~~~ 802 (1163)
T COG1196 728 LEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEAL-AKLKEEIEELEEKRQA----LQEELEELEEEL 802 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 33446677777777777777766666665555555544444221111 2222222222211111 113344444443
Q ss_pred HHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhccc---hHHHHHHHHHHHHhhhhh
Q 003495 532 EDQTKSDTEKLIADVTSLVSSHMRRQTELVEARLVDFRENAVSSKLFLDGHASSVEGIT---TDAKRKWQAFAMQADNDA 608 (815)
Q Consensus 532 ~~~~~~e~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~mq~~t---~~~~~~~~~~~~~~~~~~ 608 (815)
...- ..+.++..-+.+...+. .++...+..++.....-...+..-...+.... .....++...-.... ..
T Consensus 803 ~~~~-----~~~~~~~~~~~~~~~~~-~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~-~l 875 (1163)
T COG1196 803 EEAE-----RRLDALERELESLEQRR-ERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKE-EL 875 (1163)
T ss_pred HHHH-----HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 3332 33444555555555555 66666666666555533333332222221111 111112221111111 22
Q ss_pred hhchhhhhhhHhHhHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHhHHHHHHHHhhhhhHHHHH--------HHHHH
Q 003495 609 KDGADHSSAKHCRMELLLQECVNSGESAFGHWKRTYESVNEMESKHVSSMISLTRNASYSNEQHDVE--------VDTAR 680 (815)
Q Consensus 609 ~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~n~~~~~~--------~~~~~ 680 (815)
..........+..|+..|.............|......+..+. ..+..+...+......+...+.. ....+
T Consensus 876 ~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 954 (1163)
T COG1196 876 EDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELE-AKLERLEVELPELEEELEEEYEDTLETELEREIERL 954 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHH
Confidence 2222244455666777777777777777777777777766654 55556665555554444443221 11111
Q ss_pred HhhHHHHHHhHHHHHHHHHHhHHHHHH---HHHhHHHhHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHhhhcccCC
Q 003495 681 VATEEEVAKSSEDALQLIASASEQEQA---SIAEVLDDVKAHEKTINLFRESHSAQSASIKEKAQETFQQRYMDYEH 754 (815)
Q Consensus 681 ~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~~~~~~~~eY~~~~p 754 (815)
..-......-+-..+.-++....+... -..++......+.+.+..++..........=+.+...|..=|..=-|
T Consensus 955 e~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~~if~~L~~ 1031 (1163)
T COG1196 955 EEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFSEIFKELFG 1031 (1163)
T ss_pred HHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 111122222232333333333333333 33444555566666677777666666666666666666666643334
No 60
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.32 E-value=1.9e+02 Score=36.14 Aligned_cols=30 Identities=17% Similarity=0.281 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHhhhcccCCcCCCCccccc
Q 003495 734 SASIKEKAQETFQQRYMDYEHTGTTPTRCES 764 (815)
Q Consensus 734 ~~~i~~~~~~~~~~eY~~~~ptg~TP~k~~~ 764 (815)
.-+|+++++= |=..|.+-.|.++||.-..+
T Consensus 732 aGel~gktGW-FPenyvEki~~~e~p~~v~P 761 (1118)
T KOG1029|consen 732 AGELRGKTGW-FPENYVEKIPAVETPGGVPP 761 (1118)
T ss_pred cceeccccCc-CcHHHHhhcccCCCCCCCCc
Confidence 3467777773 45568888999999987665
No 61
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=76.08 E-value=1.9e+02 Score=34.99 Aligned_cols=39 Identities=10% Similarity=0.014 Sum_probs=23.8
Q ss_pred HhhhhhhhhhhHHHHHHHHHhhhhHHHhHHHHHHHHhhhh
Q 003495 630 VNSGESAFGHWKRTYESVNEMESKHVSSMISLTRNASYSN 669 (815)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~n 669 (815)
+..+......+......++. +..+|.+++.-+..+...=
T Consensus 447 ~~~~~~~~~~i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~ 485 (569)
T PRK04778 447 LEMFFEVSDEIEALAEELEE-KPINMEAVNRLLEEATEDV 485 (569)
T ss_pred HHHHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHH
Confidence 34445555666667777777 7788888875544444333
No 62
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=74.48 E-value=1.1e+02 Score=31.75 Aligned_cols=52 Identities=12% Similarity=0.183 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhccchHHHHHHHHHHHHhhhhhhhchh
Q 003495 562 EARLVDFRENAVSSKLFLDGHASSVEGITTDAKRKWQAFAMQADNDAKDGAD 613 (815)
Q Consensus 562 ~~~~~~~~~~~~~~~~~l~~~~~~mq~~t~~~~~~~~~~~~~~~~~~~~~~~ 613 (815)
.+++..+...+..-.......-..+++++...+.++..|...--.+|.....
T Consensus 162 ~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~ 213 (236)
T PF09325_consen 162 QDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLE 213 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667777777777777777778888888999999997766545554444
No 63
>PRK02224 chromosome segregation protein; Provisional
Probab=74.04 E-value=2.5e+02 Score=35.48 Aligned_cols=11 Identities=9% Similarity=0.057 Sum_probs=9.3
Q ss_pred EeeccCCCCCC
Q 003495 16 CSMRQSGPNGE 26 (815)
Q Consensus 16 ~ayGqTGSGkt 26 (815)
+-+|+.|+|||
T Consensus 27 ~i~G~Ng~GKS 37 (880)
T PRK02224 27 VIHGVNGSGKS 37 (880)
T ss_pred EEECCCCCCHH
Confidence 45899999997
No 64
>PRK09039 hypothetical protein; Validated
Probab=73.25 E-value=1.7e+02 Score=33.16 Aligned_cols=49 Identities=14% Similarity=0.296 Sum_probs=36.2
Q ss_pred HHHHHHHHHHcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003495 452 AASIYENLQTTLSTQQGEMAIFAREMRQRFQVTIERTKDIAEYTNGFLQKLL 503 (815)
Q Consensus 452 ~~~~~~~l~~~l~~q~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~~ff~~l~ 503 (815)
..+.+++......+++..++.+.+.++.+..+ ..+....+-.+||..|.
T Consensus 156 le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~---~~~~l~~~~~~~~~~l~ 204 (343)
T PRK09039 156 LEAALDASEKRDRESQAKIADLGRRLNVALAQ---RVQELNRYRSEFFGRLR 204 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHH
Confidence 34447777777788888888888777776654 46677778889998776
No 65
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=72.83 E-value=3.2e+02 Score=36.10 Aligned_cols=30 Identities=10% Similarity=0.124 Sum_probs=12.9
Q ss_pred HHHHHHcHHHhHHHHHHHHHHHHHHHHHHH
Q 003495 456 YENLQTTLSTQQGEMAIFAREMRQRFQVTI 485 (815)
Q Consensus 456 ~~~l~~~l~~q~~~~~~~~~q~~~~~~~~~ 485 (815)
+..+...+...+.....+..++++.-.+..
T Consensus 809 ~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~ 838 (1163)
T COG1196 809 LDALERELESLEQRRERLEQEIEELEEEIE 838 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444433333
No 66
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=71.15 E-value=1.1e+02 Score=35.09 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 003495 368 QQNEHLKHVEKLCHSLLGIHEKAVIDLKKKVTASRALYCSHMEAVQNVVRLHK 420 (815)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~l~~~~~~~~ 420 (815)
.-..+|..+...+...++.-..+..-++.++..+...|+.....+..+.+..+
T Consensus 238 ~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~ 290 (359)
T PF10498_consen 238 ETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYK 290 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444544444444444444445555555555555555555544444444
No 67
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=70.22 E-value=1.4 Score=55.32 Aligned_cols=65 Identities=15% Similarity=0.138 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhccchHHHHHHHHHHHHhhhhhhhchhhhhhhHhHhHHHHHHHHhhhhhhhhhhHHHHHH
Q 003495 575 SKLFLDGHASSVEGITTDAKRKWQAFAMQADNDAKDGADHSSAKHCRMELLLQECVNSGESAFGHWKRTYES 646 (815)
Q Consensus 575 ~~~~l~~~~~~mq~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~ 646 (815)
....|+..++. +..+|..|-.+.+..+...+-..+..|.++..-|+..-...+............
T Consensus 286 ~k~~l~~qlsk-------~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~ 350 (859)
T PF01576_consen 286 AKSELERQLSK-------LNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKT 350 (859)
T ss_dssp ------------------------------------------------------------------------
T ss_pred hHHHHHHHHHH-------HhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555 788999999999977777777777778888776666655555444444443333
No 68
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=69.83 E-value=2.6e+02 Score=33.82 Aligned_cols=52 Identities=10% Similarity=0.073 Sum_probs=29.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003495 465 TQQGEMAIFAREMRQRFQVTIERTKDIAEYTNGFLQKLLEESKSLENYAVQA 516 (815)
Q Consensus 465 ~q~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~~ff~~l~~~a~~l~~~~~~~ 516 (815)
+-.+.+.....++.++.....+.-+.+.+-...|.+-+..+-..++..+++-
T Consensus 514 ~a~~~v~s~e~el~~~~~~~~eer~ki~~ql~~~i~~i~~~k~~iqs~le~~ 565 (581)
T KOG0995|consen 514 EAEELVKSIELELDRMVATGEEERQKIAKQLFAVIDQISDFKVSIQSSLENL 565 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555666666666556666666666666666666554
No 69
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=68.76 E-value=1.7e+02 Score=31.39 Aligned_cols=41 Identities=10% Similarity=0.136 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhccchHHHHHHHHHHH
Q 003495 562 EARLVDFRENAVSSKLFLDGHASSVEGITTDAKRKWQAFAM 602 (815)
Q Consensus 562 ~~~~~~~~~~~~~~~~~l~~~~~~mq~~t~~~~~~~~~~~~ 602 (815)
.+++..+...+..-.....++....+.++...+.++..|-.
T Consensus 158 ~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~ 198 (234)
T cd07664 158 PDKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEK 198 (234)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777788888877777788888888888889999998843
No 70
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=68.51 E-value=2.6e+02 Score=33.29 Aligned_cols=20 Identities=5% Similarity=0.330 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHhcHHHHHHH
Q 003495 523 SIADFQKAYEDQTKSDTEKL 542 (815)
Q Consensus 523 ~l~~~~~~~~~~~~~e~~~l 542 (815)
.|..++..+......+|++.
T Consensus 260 pL~aY~r~~~aed~~~r~~~ 279 (475)
T PRK10361 260 TLVAYERYFNAEDDYTRESA 279 (475)
T ss_pred CHHHHHHHHhCCCHHHHHHH
Confidence 35555555554444455433
No 71
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=68.32 E-value=3.5e+02 Score=34.86 Aligned_cols=92 Identities=18% Similarity=0.172 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHhHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcHHHhHHHHH
Q 003495 392 IDLKKKVTASRALYCSHMEAVQNVVRLHKACSNANLEEISAFASSNSESIKEFLASEAREAASIYENLQTTLSTQQGEMA 471 (815)
Q Consensus 392 ~el~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~q~~~~~ 471 (815)
.+-++.+.+..+.|....+........+. .-...++.+.+-.+..-+ -+..|..-..+|+..+.++...+..-+-++.
T Consensus 346 ~~k~~~~~~~~~~~~~~ke~~~~~s~~~e-~~e~~~eslt~G~Ss~~~-~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e 423 (1174)
T KOG0933|consen 346 KEKEKAMAKVEEGYEKLKEAFQEDSKLLE-KAEELVESLTAGLSSNED-EEKTLEDQLRDAKITLSEASTEIKQAKLKLE 423 (1174)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHhcccccCcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443333332 233333333333333333 5667788888899999999999999888899
Q ss_pred HHHHHHHHHHHHHH
Q 003495 472 IFAREMRQRFQVTI 485 (815)
Q Consensus 472 ~~~~q~~~~~~~~~ 485 (815)
+++.|+...--...
T Consensus 424 ~~~~elk~~e~e~~ 437 (1174)
T KOG0933|consen 424 HLRKELKLREGELA 437 (1174)
T ss_pred HHHHHHHhhhhHhh
Confidence 99888876544333
No 72
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=67.46 E-value=3.1e+02 Score=33.88 Aligned_cols=36 Identities=8% Similarity=0.106 Sum_probs=21.7
Q ss_pred HHHHhHHHhHHHHHHhHHHHhhhhhcchHHHHHHHH
Q 003495 707 ASIAEVLDDVKAHEKTINLFRESHSAQSASIKEKAQ 742 (815)
Q Consensus 707 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~~~ 742 (815)
+-..........+......++..|.+.+...+-++.
T Consensus 739 eE~~~l~~r~~~le~e~r~~k~~~~q~lq~~ll~ve 774 (961)
T KOG4673|consen 739 EEADTLEGRANQLEVEIRELKRKHKQELQEVLLHVE 774 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 333444555555666666777777777766655543
No 73
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=67.00 E-value=1.3e+02 Score=29.19 Aligned_cols=32 Identities=22% Similarity=0.446 Sum_probs=27.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003495 381 HSLLGIHEKAVIDLKKKVTASRALYCSHMEAV 412 (815)
Q Consensus 381 ~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~l 412 (815)
-.++..+.+.+.||+..+..+|++|...++.|
T Consensus 88 LellGEK~E~veEL~~Dv~DlK~myr~Qi~~l 119 (120)
T PF12325_consen 88 LELLGEKSEEVEELRADVQDLKEMYREQIDQL 119 (120)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34678888999999999999999999977654
No 74
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=66.62 E-value=3.3e+02 Score=33.93 Aligned_cols=40 Identities=20% Similarity=0.276 Sum_probs=29.2
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHcHHHhHHHHHHHHHHHHHHH
Q 003495 441 IK-EFLASEAREAASIYENLQTTLSTQQGEMAIFAREMRQRF 481 (815)
Q Consensus 441 ~~-~~~~~~~~~~~~~~~~l~~~l~~q~~~~~~~~~q~~~~~ 481 (815)
|+ ++++. -.|++.-++.++.+|..|..|+..|++.+.+..
T Consensus 616 iKldLfsa-Lg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~ 656 (697)
T PF09726_consen 616 IKLDLFSA-LGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL 656 (697)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 44444 446788888889999999888888888776654
No 75
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=64.56 E-value=1.7e+02 Score=29.86 Aligned_cols=39 Identities=3% Similarity=0.191 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHcHHHhHHHHHHHHHHHHH
Q 003495 441 IKEFLASEAREA-ASIYENLQTTLSTQQGEMAIFAREMRQ 479 (815)
Q Consensus 441 ~~~~~~~~~~~~-~~~~~~l~~~l~~q~~~~~~~~~q~~~ 479 (815)
+.+.|...+..+ ++..+.+...+++.+.++..+.-++++
T Consensus 64 ~s~~~~~~vk~L~k~~~~~l~d~inE~t~k~~El~~~i~e 103 (165)
T PF09602_consen 64 FSDLYEEYVKQLRKATGNSLNDSINEWTDKLNELSAKIQE 103 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444 333455555556666655555555433
No 76
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.85 E-value=3.9e+02 Score=33.73 Aligned_cols=37 Identities=14% Similarity=0.211 Sum_probs=29.3
Q ss_pred HHHHHHcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003495 456 YENLQTTLSTQQGEMAIFAREMRQRFQVTIERTKDIA 492 (815)
Q Consensus 456 ~~~l~~~l~~q~~~~~~~~~q~~~~~~~~~~~~~~~s 492 (815)
+-+.-+++.+|+.+++.+..|.+..+.++-..+....
T Consensus 801 l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le 837 (970)
T KOG0946|consen 801 LSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLE 837 (970)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 5556778889999999999999888888777666554
No 77
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.78 E-value=3.1e+02 Score=32.58 Aligned_cols=113 Identities=17% Similarity=0.186 Sum_probs=69.3
Q ss_pred HHHHHHcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Q 003495 456 YENLQTTLSTQQGEMAIFAREMRQRFQVTIERTKDIAEYTNGFLQKLLEESKSLENYAVQADENQMKSIADFQKAYEDQT 535 (815)
Q Consensus 456 ~~~l~~~l~~q~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~~ff~~l~~~a~~l~~~~~~~~~~~~~~l~~~~~~~~~~~ 535 (815)
|+||...+.-|-+++...| .+.+.+.+.....++-=.+++-+|..+=.++.++-..- -+---..+..+.+--.-
T Consensus 336 F~dL~~R~K~Q~q~~~~~r----~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~Ri--LRv~ikqeilr~~G~~L 409 (508)
T KOG3091|consen 336 FEDLRQRLKVQDQEVKQHR----IRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRI--LRVMIKQEILRKRGYAL 409 (508)
T ss_pred hHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhccCCcC
Confidence 7888888888887776544 34444555555555555667777766665555443221 00111122233333344
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhh
Q 003495 536 KSDTEKLIADVTSLVSSHMRRQTELVEARLVDFRENAVSSK 576 (815)
Q Consensus 536 ~~e~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (815)
..++++|=+|...|+....+- +=+..||..|.+-+...+
T Consensus 410 ~~~EE~Lr~Kldtll~~ln~P--nq~k~Rl~~L~e~~r~q~ 448 (508)
T KOG3091|consen 410 TPDEEELRAKLDTLLAQLNAP--NQLKARLDELYEILRMQN 448 (508)
T ss_pred CccHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHhhc
Confidence 567778888888888877776 778888888887776654
No 78
>PRK04863 mukB cell division protein MukB; Provisional
Probab=62.67 E-value=5.5e+02 Score=35.02 Aligned_cols=13 Identities=8% Similarity=-0.036 Sum_probs=10.8
Q ss_pred EEEeeccCCCCCC
Q 003495 14 QLCSMRQSGPNGE 26 (815)
Q Consensus 14 ~I~ayGqTGSGkt 26 (815)
+++-+|+.|+|||
T Consensus 29 ~~~l~G~NGaGKS 41 (1486)
T PRK04863 29 VTTLSGGNGAGKS 41 (1486)
T ss_pred eEEEECCCCCCHH
Confidence 6667799999997
No 79
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=60.87 E-value=2.4e+02 Score=31.23 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003495 303 LNNTEEQLKKCQYALKEKDFIISEQK 328 (815)
Q Consensus 303 l~~~~~~l~~~~~~l~e~e~~i~~~~ 328 (815)
+..+..+|+.....|.+++--|.+++
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLk 95 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELK 95 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33444445555555556665555544
No 80
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=59.40 E-value=1.3e+02 Score=30.39 Aligned_cols=46 Identities=11% Similarity=0.132 Sum_probs=24.7
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcHHHhHHHHHHH
Q 003495 428 EEISAFASSNSESIKEFLASEAREAASIYENLQTTLSTQQGEMAIF 473 (815)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~q~~~~~~~ 473 (815)
-++...+...-..|..-+.+++.++..+-.+|-......++.|+.+
T Consensus 84 Pev~~qa~~l~e~lQ~~vq~l~~E~qk~~k~v~~~~~~~~e~l~~~ 129 (155)
T PF07464_consen 84 PEVEKQANELQEKLQSAVQSLVQESQKLAKEVSENSEGANEKLQPA 129 (155)
T ss_dssp HHHHHT-SSSHHHHHHHHHHHHHHHHHHHHHHHS---SS-GGGHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4444445555555666677777776666666666666666654443
No 81
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=58.60 E-value=3e+02 Score=30.71 Aligned_cols=138 Identities=12% Similarity=0.109 Sum_probs=82.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh--HHhHHHHHHHHhhchhHHHHHHHHHHHHHHHH-
Q 003495 379 LCHSLLGIHEKAVIDLKKKVTASRALYCSHMEAVQNVVRLHKACS--NANLEEISAFASSNSESIKEFLASEAREAASI- 455 (815)
Q Consensus 379 ~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 455 (815)
.|..-++.-.+...-|..++.+.....++.-.+++.....+..+. -..++.--+.+..+...++.+|..--.-...-
T Consensus 134 kmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~ 213 (305)
T PF14915_consen 134 KMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYI 213 (305)
T ss_pred HhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 333333333333445556666666666776666777766666433 22222222333455566777776644433222
Q ss_pred --HHHHHHcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 003495 456 --YENLQTTLSTQQGEMAIFAREMRQRFQVTIERTKDIAEYT---NGFLQKLLEESKSLENYAVQA 516 (815)
Q Consensus 456 --~~~l~~~l~~q~~~~~~~~~q~~~~~~~~~~~~~~~s~~~---~~ff~~l~~~a~~l~~~~~~~ 516 (815)
-+.+...|...+.+-..|+||+.+|+....---+.|..+= .+.|.+|..+..+=.-+|++-
T Consensus 214 ~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEEr 279 (305)
T PF14915_consen 214 GKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEER 279 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888899999999999999998875544444333 344666666665555555543
No 82
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=57.79 E-value=5e+02 Score=33.06 Aligned_cols=35 Identities=9% Similarity=0.170 Sum_probs=22.9
Q ss_pred HHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHhhhh
Q 003495 541 KLIADVT-SLVSSHMRRQTELVEARLVDFRENAVSS 575 (815)
Q Consensus 541 ~l~~~i~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (815)
|+..+.. -+|.++.......+++.+..+-.-+..+
T Consensus 580 Q~~~~~~~~il~~~~~~~~q~lq~al~~ld~P~~~~ 615 (980)
T KOG0980|consen 580 QLQDDLNDPILDGSLASGIQALQNALYQLDSPLHWR 615 (980)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHhcCCCcccC
Confidence 3444444 4677778888888888888776664443
No 83
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=57.00 E-value=4.3e+02 Score=32.02 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=13.7
Q ss_pred ceEEecCCCCCChHhHHHHHHHHH
Q 003495 235 CIIATVSPAVHCLEETLSTLDYAH 258 (815)
Q Consensus 235 ~~IatISP~~~~~eETlsTL~fA~ 258 (815)
.+++.++|. ++..-|..|..--
T Consensus 147 s~~a~gspH--~WP~iL~mlhWlv 168 (581)
T KOG0995|consen 147 SLQAAGSPH--NWPHILGMLHWLV 168 (581)
T ss_pred hhccCCCCC--ccHHHHHHHHHHH
Confidence 666666664 5666676666544
No 84
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=56.42 E-value=2.6e+02 Score=29.35 Aligned_cols=122 Identities=16% Similarity=0.228 Sum_probs=71.7
Q ss_pred HHHHHHHHhhHHhHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003495 414 NVVRLHKACSNANLEEISAFASSNSESIKEFLASEAREAASIYENLQTTLSTQQGEMAIFAREMRQRFQVTIERTKDIAE 493 (815)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~q~~~~~~~~~q~~~~~~~~~~~~~~~s~ 493 (815)
+|+++++ -.++++.....+-...|+.+....... +|.|++- .++-....- .+++-+++.++.+.-+.+..
T Consensus 3 ~i~~~~~----P~~e~lv~~~~kY~~al~~~~~a~~~f----~dal~ki-~~~A~~s~~-s~~lG~~L~~~s~~~r~i~~ 72 (219)
T PF08397_consen 3 NIMEDFN----PAWENLVSLGKKYQKALRAMSQAAAAF----FDALQKI-GDMASNSRG-SKELGDALMQISEVHRRIEN 72 (219)
T ss_dssp HHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH-HHHHHTSSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhcC----HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH-HHhccCCCc-cccHHHHHHHHHHHHHHHHH
Confidence 3444444 667777777776666666555554444 4444432 221111111 44677888888888888888
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHH
Q 003495 494 YTNGFLQKLLEESK-SLENYAVQADENQMKSIADFQKAYEDQTKSDTEKLIADVTSL 549 (815)
Q Consensus 494 ~~~~ff~~l~~~a~-~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~l~~~i~~l 549 (815)
-...||+.++...- -|++.++.- .+-+.+..+.|....+.-++.|--..+.+
T Consensus 73 ~~~~~~~~~~~~li~pLe~~~e~d----~k~i~~~~K~y~ke~k~~~~~l~K~~se~ 125 (219)
T PF08397_consen 73 ELEEVFKAFHSELIQPLEKKLEED----KKYITQLEKDYEKEYKRKRDELKKAESEL 125 (219)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887543 566666654 44556666666655555555444334443
No 85
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=55.79 E-value=3e+02 Score=29.78 Aligned_cols=103 Identities=14% Similarity=0.117 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcHHH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003495 441 IKEFLASEAREAASIYENLQTTLST-----QQGEMAIFAREMRQRFQVTIERTKDIAEYTNGFLQKLLEESKSLENYAVQ 515 (815)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~l~~~l~~-----q~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~~ff~~l~~~a~~l~~~~~~ 515 (815)
...-+...+-+.++.-..+.+.... -..++..++.+++++-.+-.++.......|.+|.++=.+.+..|
T Consensus 126 ~RKkLe~~RLd~D~~k~r~~ka~k~~~~~~~~~K~~~l~eE~e~ae~k~e~~~e~~~~~M~~~l~~E~e~~~~l------ 199 (244)
T cd07595 126 QKKRLSKLVLDMDSARSRYNAAHKSSGGQGAAAKVDALKDEYEEAELKLEQCRDALATDMYEFLAKEAEIASYL------ 199 (244)
T ss_pred HHHHHhhhhHHHHHHHHHHHhccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH------
Confidence 3445556666655554444432200 12445678889999999988888888866666666533333333
Q ss_pred HhhhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHhHH
Q 003495 516 ADENQMKSIADFQKAYEDQTKSDTEKLIADVTSLVSSHMR 555 (815)
Q Consensus 516 ~~~~~~~~l~~~~~~~~~~~~~e~~~l~~~i~~l~~~~~~ 555 (815)
..+.+-+-+|.+.|...-+.++..|..++.....
T Consensus 200 ------~~lv~aQl~YH~~a~e~L~~l~~~l~~~~~~~~~ 233 (244)
T cd07595 200 ------IDLIEAQREYHRTALSVLEAVLPELQEQIEQSPS 233 (244)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4445557889999999999999999988876543
No 86
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=55.42 E-value=2.9e+02 Score=29.63 Aligned_cols=24 Identities=21% Similarity=0.435 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHH
Q 003495 350 ELAQQIGSLCDIVDLSTCQQNEHL 373 (815)
Q Consensus 350 ~l~~~~~~l~~~l~~~~~~~~~~l 373 (815)
++.+.+..|++.+....++.+...
T Consensus 57 qI~~DIn~lE~iIkqa~~er~~~~ 80 (230)
T PF10146_consen 57 QINQDINTLENIIKQAESERNKRQ 80 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666655544444433
No 87
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=54.89 E-value=5.2e+02 Score=32.37 Aligned_cols=20 Identities=5% Similarity=0.195 Sum_probs=10.8
Q ss_pred HHHHHHHcHHHhHHHHHHHH
Q 003495 455 IYENLQTTLSTQQGEMAIFA 474 (815)
Q Consensus 455 ~~~~l~~~l~~q~~~~~~~~ 474 (815)
-+..|..++...|..++..+
T Consensus 647 ~l~~l~~si~~lk~k~~~Q~ 666 (717)
T PF10168_consen 647 QLQDLKASIEQLKKKLDYQQ 666 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35556666666555555433
No 88
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=54.46 E-value=4.6e+02 Score=31.57 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=12.6
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHH
Q 003495 527 FQKAYEDQTKSDTEKLIADVTSLVSS 552 (815)
Q Consensus 527 ~~~~~~~~~~~e~~~l~~~i~~l~~~ 552 (815)
|.+.-++.-+.||..-++++..|...
T Consensus 361 ~~~~i~~~v~~Er~~~~~~l~~~~~~ 386 (582)
T PF09731_consen 361 FEKEIKEKVEQERNGRLAKLAELNSR 386 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555555444433
No 89
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=53.91 E-value=4.4e+02 Score=31.16 Aligned_cols=31 Identities=6% Similarity=0.014 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003495 371 EHLKHVEKLCHSLLGIHEKAVIDLKKKVTAS 401 (815)
Q Consensus 371 ~~l~~~~~~~~~~~~~~~~~~~el~~~~~~~ 401 (815)
+.+..+...+..........++++.+.+..+
T Consensus 68 ~~l~~~w~~v~~~~~~r~~~I~~l~~~L~~~ 98 (473)
T PF14643_consen 68 QDLLELWDEVAEHSQKRKQWIKELDEDLEEL 98 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443
No 90
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=53.56 E-value=5.5e+02 Score=32.21 Aligned_cols=15 Identities=13% Similarity=0.260 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHhhcc
Q 003495 249 ETLSTLDYAHRAKNI 263 (815)
Q Consensus 249 ETlsTL~fA~rak~I 263 (815)
-+..+|+|-.+|-++
T Consensus 533 ~~~E~l~lL~~a~~v 547 (717)
T PF10168_consen 533 SPQECLELLSQATKV 547 (717)
T ss_pred CCHHHHHHHHHHHHH
Confidence 366677776666543
No 91
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=53.40 E-value=4.4e+02 Score=31.06 Aligned_cols=14 Identities=7% Similarity=-0.076 Sum_probs=10.2
Q ss_pred CCCcCCchhhhhhc
Q 003495 213 IPYRDSKLTRLLRD 226 (815)
Q Consensus 213 IPYRdSKLTrLLqd 226 (815)
-+|-.+++.|+.+.
T Consensus 209 w~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 209 WWDSSCPVCRYCQS 222 (493)
T ss_pred cccCcChhhhhhcC
Confidence 45667888888776
No 92
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=53.08 E-value=3.2e+02 Score=29.42 Aligned_cols=128 Identities=14% Similarity=0.208 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHc-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003495 442 KEFLASEAREAASIYENLQTT-LSTQQGEMAIFAREMRQRFQVTIERTKDIAEYTNGFLQKLLEESKSLENYAVQADENQ 520 (815)
Q Consensus 442 ~~~~~~~~~~~~~~~~~l~~~-l~~q~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~~ff~~l~~~a~~l~~~~~~~~~~~ 520 (815)
...+...-.+++.++.+|.+. +..|+.. ...-+..++..=.....+|.+.......|...+.+.=...
T Consensus 122 ~~~l~~~l~ea~~mL~emr~r~f~~~~~~-----------Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~ 190 (264)
T PF06008_consen 122 SEDLQRALAEAQRMLEEMRKRDFTPQRQN-----------AEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDY 190 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHH-----------HHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHH
Confidence 345556667777777777543 2222221 1122222223333334444444444444444444433334
Q ss_pred hhhHHHHHHHHHHhcHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 003495 521 MKSIADFQKAYEDQTKSDT--EKLIADVTSLVSSHMRRQTELVEARLVDFRENAVSSKLFLDG 581 (815)
Q Consensus 521 ~~~l~~~~~~~~~~~~~e~--~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 581 (815)
..+|.++...-.+.....+ ..|...+...+. ...+|...|...-..+.+.+....+.|.+
T Consensus 191 ~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~-~~~~k~~~l~~~~~~~~~~L~~a~~~L~~ 252 (264)
T PF06008_consen 191 NAKLQDLRDLLNEAQNKTREAEDLNRANQKNLE-DLEKKKQELSEQQNEVSETLKEAEDLLDQ 252 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555444444332222 122222222222 22334444444444444444444444443
No 93
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=52.85 E-value=3.4e+02 Score=29.61 Aligned_cols=102 Identities=13% Similarity=0.101 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHhHHHHHHHHhhchhHHHHHHHHHHH
Q 003495 371 EHLKHVEKLCHSLLGIHEKAVIDLKKKVTASRALYCSHMEAVQNVVRLHKACSNANLEEISAFASSNSESIKEFLASEAR 450 (815)
Q Consensus 371 ~~l~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (815)
++...|.+.+..|.....+-..+|..++..++..++......+.+.- ....+-..+++.+.....
T Consensus 27 q~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~---------------E~e~~Kek~e~q~~q~y~ 91 (333)
T KOG1853|consen 27 QHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTT---------------EQERNKEKQEDQRVQFYQ 91 (333)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666665555543333322222 122222223333322222
Q ss_pred HHHHHHHHHHHcHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 003495 451 EAASIYENLQTTLSTQQGEMAIFAREMRQRFQVTIERTK 489 (815)
Q Consensus 451 ~~~~~~~~l~~~l~~q~~~~~~~~~q~~~~~~~~~~~~~ 489 (815)
-.+.++|=..++.++++-+..+-+++++++.- ++.++
T Consensus 92 -q~s~Leddlsqt~aikeql~kyiReLEQaNDd-LErak 128 (333)
T KOG1853|consen 92 -QESQLEDDLSQTHAIKEQLRKYIRELEQANDD-LERAK 128 (333)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHhh
Confidence 23456677789999999999999999999875 33333
No 94
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=52.72 E-value=6.8e+02 Score=33.02 Aligned_cols=59 Identities=5% Similarity=-0.012 Sum_probs=31.1
Q ss_pred hhhhchhhhhhhHhHhHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHhHHHHHHHHhhhhh
Q 003495 607 DAKDGADHSSAKHCRMELLLQECVNSGESAFGHWKRTYESVNEMESKHVSSMISLTRNASYSNE 670 (815)
Q Consensus 607 ~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~n~ 670 (815)
...++.....+++..+ ++.-........-...+...+..|. .+..++..=|..+++++.
T Consensus 536 ~~~e~~~~l~~~k~~l----~~~k~e~~~~~k~l~~~~~e~~~~~-~~~~~~rqrveE~ks~~~ 594 (1293)
T KOG0996|consen 536 SLKEKKTELDDLKEEL----PSLKQELKEKEKELPKLRKEERNLK-SQLNKLRQRVEEAKSSLS 594 (1293)
T ss_pred HHHHHHHHHHHHHHhh----hhHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3344444444444444 3333344555555555555555555 666666666666665443
No 95
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=52.32 E-value=3.1e+02 Score=29.01 Aligned_cols=105 Identities=11% Similarity=0.168 Sum_probs=61.2
Q ss_pred HHHHHHHHHcHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 003495 453 ASIYENLQTTLSTQQGEMAIFAREMR---QRFQVTIERTKDIAEYTNGFLQKLLEESKSLENYAVQADENQMKSIADFQK 529 (815)
Q Consensus 453 ~~~~~~l~~~l~~q~~~~~~~~~q~~---~~~~~~~~~~~~~s~~~~~ff~~l~~~a~~l~~~~~~~~~~~~~~l~~~~~ 529 (815)
+..|++..+.+..|+.+...|..+.. ++......+...+++.+-+||+....-...+..+.+.. +.-..+|+.
T Consensus 11 D~~Fe~~e~~f~~~e~~~~kL~k~~K~Y~~av~~m~~~q~~~~e~l~~lY~p~~~~~~~~~~v~e~~----d~~~~~l~~ 86 (211)
T cd07588 11 DEVFDEHVNNFNKQQASANRLQKDLKNYLNSVRAMKQASKTLSETLKELYEPDWPGREHLASIFEQL----DLLWNDLEE 86 (211)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHH----HHHHHHHHH
Confidence 45688888888888888888877765 34444455666666666677766532335555554443 233444555
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 003495 530 AYEDQTKSDTEKLIADVTSLVSSHMRRQTELV 561 (815)
Q Consensus 530 ~~~~~~~~e~~~l~~~i~~l~~~~~~~~~~~~ 561 (815)
.+++..-.=-+.+++++..+=..-..|..++|
T Consensus 87 ~l~~~Vl~Pl~~~~s~f~~i~k~I~KR~~Kll 118 (211)
T cd07588 87 KLSDQVLGPLTAYQSQFPEVKKRIAKRGRKLV 118 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 55555555555555555555444444444443
No 96
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=52.08 E-value=6.3e+02 Score=32.50 Aligned_cols=89 Identities=13% Similarity=0.127 Sum_probs=54.5
Q ss_pred HHHHHHcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhHHHHHHHHHHh
Q 003495 456 YENLQTTLSTQQGEMAIFAREMRQRFQVTIERTKDIAEYTNGFLQKLLEESKSL-ENYAVQADENQMKSIADFQKAYEDQ 534 (815)
Q Consensus 456 ~~~l~~~l~~q~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~~ff~~l~~~a~~l-~~~~~~~~~~~~~~l~~~~~~~~~~ 534 (815)
++|+...|-.|++.++.++.-|.|..++..-+..- .|....+++ ++.++.-......+|.+|..+=+.+
T Consensus 878 ~ed~~~~l~~qQe~~a~l~~sQ~el~~~l~~ql~g----------~le~~l~~~iEk~lks~~d~~~~rl~e~la~~e~~ 947 (1283)
T KOG1916|consen 878 MEDLLPQLLAQQETMAQLMASQKELQRQLSNQLTG----------PLEVALGRMIEKSLKSNADALWARLQEELAKNEKA 947 (1283)
T ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcc----------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhh
Confidence 67888888889999988888888777666544432 122222332 2233333334455666666666666
Q ss_pred cHHHHHHHHHHHHHHHHHhH
Q 003495 535 TKSDTEKLIADVTSLVSSHM 554 (815)
Q Consensus 535 ~~~e~~~l~~~i~~l~~~~~ 554 (815)
-..=+++++.+.+..+++.-
T Consensus 948 ~r~~~~qi~q~ltq~~s~~~ 967 (1283)
T KOG1916|consen 948 LRDLQQQITQQLTQFLSKEL 967 (1283)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 66666777777776665543
No 97
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=51.92 E-value=4.8e+02 Score=31.07 Aligned_cols=43 Identities=5% Similarity=0.004 Sum_probs=21.5
Q ss_pred HHHhHHHHHHHHHHhHHHHHHHHHhHHHhHHHHHHhHHHHhhh
Q 003495 687 VAKSSEDALQLIASASEQEQASIAEVLDDVKAHEKTINLFRES 729 (815)
Q Consensus 687 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 729 (815)
+......+...+..+......++..+.............|.++
T Consensus 371 Ia~~a~~Lydkl~~f~~~~~klG~~L~~a~~~y~~A~~~L~~G 413 (475)
T PRK10361 371 IADRASKLYDKMRLFVDDMSAIGQSLDKAQDNYRQAMKKLSSG 413 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333344444444444444455555555555555555555543
No 98
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=51.61 E-value=5.2e+02 Score=31.38 Aligned_cols=40 Identities=8% Similarity=0.125 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcHHHhHHHHHHHHHHHHH
Q 003495 440 SIKEFLASEAREAASIYENLQTTLSTQQGEMAIFAREMRQ 479 (815)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~l~~~l~~q~~~~~~~~~q~~~ 479 (815)
...+.|...+......+|+....++.|-++...+..|+..
T Consensus 414 ~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~ 453 (607)
T KOG0240|consen 414 EEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLD 453 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666777777777777777766666544
No 99
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=49.90 E-value=7e+02 Score=32.34 Aligned_cols=111 Identities=15% Similarity=0.178 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003495 441 IKEFLASEAREAASIYENLQTTLSTQQGEMAIFAREMRQRFQVTIERTKDIAEYTNGFLQKLLEESKSLENYAVQADENQ 520 (815)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~l~~~l~~q~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~~ff~~l~~~a~~l~~~~~~~~~~~ 520 (815)
-..++-+-....+..|++...+-+.-+.+++.+..++.+-+...-+-..++-+.- +=.++++.....+.+-+++.
T Consensus 391 RDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~-~r~~~~~~~~~~~k~~~del---- 465 (1200)
T KOG0964|consen 391 RDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETK-GRMEEFDAENTELKRELDEL---- 465 (1200)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh-hHHHHHHHHHHHHHHHHHHH----
Confidence 4466666677777778888777777788888888887777666555554443110 00111111222222222222
Q ss_pred hhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 003495 521 MKSIADFQKAYEDQTKSDTEKLIADVTSLVSSHMRRQTELVEAR 564 (815)
Q Consensus 521 ~~~l~~~~~~~~~~~~~e~~~l~~~i~~l~~~~~~~~~~~~~~~ 564 (815)
..+ +....+|+++|-..|+++.....+.+..+-.+-
T Consensus 466 -------~~~-Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~ 501 (1200)
T KOG0964|consen 466 -------QDK-RKELWREEKKLRSLIANLEEDLSRAEKNLRATM 501 (1200)
T ss_pred -------HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 222 556778888999999998888777776655443
No 100
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=48.12 E-value=6.8e+02 Score=31.72 Aligned_cols=135 Identities=14% Similarity=0.111 Sum_probs=83.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----H---hhHHhHHHHHHHHhhchhHHHHHHHHHHHH
Q 003495 380 CHSLLGIHEKAVIDLKKKVTASRALYCSHMEAVQNVVRLHK-----A---CSNANLEEISAFASSNSESIKEFLASEARE 451 (815)
Q Consensus 380 ~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~l~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (815)
+...++.....+..|.+++..+.+.+...-..+......+. . .....+++......+....|...-.....+
T Consensus 383 l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e 462 (775)
T PF10174_consen 383 LRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKE 462 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556666666666666666555555555555555 1 122334444444445555555554444555
Q ss_pred HHHHHHHHHHcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003495 452 AASIYENLQTTLSTQQGEMAIFAREMRQRFQVTIERTKDIAEYTNGFLQKLLEESKSLENYAVQ 515 (815)
Q Consensus 452 ~~~~~~~l~~~l~~q~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~~ff~~l~~~a~~l~~~~~~ 515 (815)
...=++...+.+...+..++.|...+.+.-.....+-..+++.+-+-+.. +.+..+|.=.++.
T Consensus 463 ~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~-~s~i~~l~I~lEk 525 (775)
T PF10174_consen 463 RQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKK-DSEIERLEIELEK 525 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchh-hhHHHHHHHHHHH
Confidence 55667888888888888888888888888877777777777666666655 5555555444443
No 101
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=47.75 E-value=5.2e+02 Score=30.27 Aligned_cols=185 Identities=12% Similarity=0.109 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 003495 451 EAASIYENLQTTLSTQQGEMAIFAREMRQRFQVTIERTKDIAEYTNGFLQKLLEESKSLENYAVQADENQMKSIADFQKA 530 (815)
Q Consensus 451 ~~~~~~~~l~~~l~~q~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~~ff~~l~~~a~~l~~~~~~~~~~~~~~l~~~~~~ 530 (815)
+.+..+..|++.|.+++.+++.+..|+.+.-...-+..+.|+ . ....|..++..
T Consensus 56 ~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~---------------~-----------~~~~l~~l~~q 109 (420)
T COG4942 56 EQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIA---------------D-----------LNARLNALEVQ 109 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHH---------------H-----------HHHHHHHHHHH
Confidence 344557777888888888888888777766555545555444 1 11122222222
Q ss_pred HHHhcHHHHHHHHHHH-HH------------HHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhccchHHHHHH
Q 003495 531 YEDQTKSDTEKLIADV-TS------------LVSSHMRRQTELVEARLVDFRENAVSSKLFLDGHASSVEGITTDAKRKW 597 (815)
Q Consensus 531 ~~~~~~~e~~~l~~~i-~~------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~mq~~t~~~~~~~ 597 (815)
. +++...|+.+ .+ ++...-.....|+......|.....+..+.|......+..+. ..+
T Consensus 110 ~-----r~qr~~La~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~----~~i 180 (420)
T COG4942 110 E-----REQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVR----AEI 180 (420)
T ss_pred H-----HHHHHHHHHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 2 3333333332 22 333334456678888888888888888888888877763322 222
Q ss_pred HHHHHHhhhhhhhchhhhhhhHhHhHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHhHHHHHHHHhhhhhHHHHH
Q 003495 598 QAFAMQADNDAKDGADHSSAKHCRMELLLQECVNSGESAFGHWKRTYESVNEMESKHVSSMISLTRNASYSNEQHDVE 675 (815)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~n~~~~~~ 675 (815)
.+ ++.+ ...-..-..+.+.+|+-.+++--++...-...+..-+..+..|. .+-.+|-..|.++..++....++
T Consensus 181 aa--eq~~--l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~-~~~~~L~~~Ias~e~~aA~~re~ 253 (420)
T COG4942 181 AA--EQAE--LTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELR-ANESRLKNEIASAEAAAAKAREA 253 (420)
T ss_pred HH--HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1111 22222234444566766777777777777777777788888877 77777777777777666644443
No 102
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=47.70 E-value=5.5e+02 Score=30.47 Aligned_cols=38 Identities=16% Similarity=0.367 Sum_probs=25.7
Q ss_pred HHhhhhhhhHHHHHHHHHH---hcHHHHHHHHHHHHHHHHH
Q 003495 515 QADENQMKSIADFQKAYED---QTKSDTEKLIADVTSLVSS 552 (815)
Q Consensus 515 ~~~~~~~~~l~~~~~~~~~---~~~~e~~~l~~~i~~l~~~ 552 (815)
.+-+.+.+.+.-|+.+|.. .--.||++|=+....||+.
T Consensus 485 rEKe~~EqefLslqeEfQk~ekenl~ERqkLKs~leKLvaq 525 (527)
T PF15066_consen 485 REKETREQEFLSLQEEFQKHEKENLEERQKLKSRLEKLVAQ 525 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 3444566666666666644 4457899999888888763
No 103
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=47.65 E-value=5.1e+02 Score=30.13 Aligned_cols=96 Identities=9% Similarity=0.047 Sum_probs=53.6
Q ss_pred cHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcHHHHHH
Q 003495 462 TLSTQQGEMAIFAREMRQRFQVTIERTKDIAEYTNGFLQKLLEESKSLENYAVQADENQMKSIADFQKAYEDQTKSDTEK 541 (815)
Q Consensus 462 ~l~~q~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~~ff~~l~~~a~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~ 541 (815)
++.-++.|+..|++++..+-.+..-...+-+.-..+..+++-++.++|+ ... .++..+++--....+ | .
T Consensus 270 ~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE-~~~------~Qq~~q~e~~~n~~~---r-~ 338 (395)
T PF10267_consen 270 LTELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE-QQQ------QQQVVQLEGTENSRA---R-A 338 (395)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHH------hhhhhhhcccccccH---H-H
Confidence 4456788899999998777776555555555555567777777778877 111 122222222111111 2 7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 003495 542 LIADVTSLVSSHMRRQTELVEARLVDF 568 (815)
Q Consensus 542 l~~~i~~l~~~~~~~~~~~~~~~~~~~ 568 (815)
+|.+..++|=....-=--.|.+..+.+
T Consensus 339 ~l~k~inllL~l~~vlLv~vSt~~~~~ 365 (395)
T PF10267_consen 339 LLGKLINLLLTLLTVLLVFVSTVANCP 365 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 777777766555443333444444433
No 104
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=47.61 E-value=7.4e+02 Score=32.00 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=10.4
Q ss_pred cEEEEecCHHHHHHHhHh
Q 003495 103 LEEEIVTSASEIFTLLER 120 (815)
Q Consensus 103 Ltev~V~S~~e~~~lL~~ 120 (815)
+..+.|.+.+.+..+|.-
T Consensus 549 l~~ivv~~~~~a~~~i~~ 566 (1164)
T TIGR02169 549 LNNVVVEDDAVAKEAIEL 566 (1164)
T ss_pred hCCEEECCHHHHHHHHHH
Confidence 445666776655555544
No 105
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=47.60 E-value=5.8e+02 Score=30.73 Aligned_cols=111 Identities=12% Similarity=0.096 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHhhhh----hhhhhhhhhhhhccchHHHHHHHHHHHHhhhhhhh-chhhhhhhHhHhHHHHHHHH
Q 003495 556 RQTELVEARLVDFRENAVSS----KLFLDGHASSVEGITTDAKRKWQAFAMQADNDAKD-GADHSSAKHCRMELLLQECV 630 (815)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~mq~~t~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~l~~~~ 630 (815)
++..-|...+..|+..+... ..-|..++..+..++.+ ..-++.-...-...... ++.+.+.+..++..+-..|.
T Consensus 405 ~~~~~l~~a~~~l~~~l~~~~~~~~~p~~~el~~l~~~~~~-d~~v~~~l~~l~~~a~~~Gv~s~~~L~~rf~~v~~~~r 483 (582)
T PF09731_consen 405 RRAQQLWLAVDALKSALDSGNAGSPRPFEDELRALKELAPD-DELVDAALSSLPPEAAQRGVPSEAQLRNRFERVAPEVR 483 (582)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHhCCC-ChHHHHHHHhcCHHHhhCCCCCHHHHHHHHHHHHHHHH
Confidence 34455667778888877766 35777777776665322 22333333334444545 78899999999966655554
Q ss_pred hhh---hhhhhhhHHHHHHHHHhhh---------hHHHhHHHHHHHHhh
Q 003495 631 NSG---ESAFGHWKRTYESVNEMES---------KHVSSMISLTRNASY 667 (815)
Q Consensus 631 ~~~---~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~v~~~~~ 667 (815)
..+ .....-|.+.-..+..+-. ..-..+++++.++..
T Consensus 484 ~~~l~~~~~~g~~~~~~s~~~S~l~~~~~~~~~~~~~~d~~~ilarae~ 532 (582)
T PF09731_consen 484 RASLVPPEGAGLLGHLLSYLFSLLLFRPKGGEVDPEGDDVESILARAEY 532 (582)
T ss_pred HHHhcCCCCCCHHHHHHHHHHheeeeecCCCCCCCCCCCHHHHHHHHHH
Confidence 442 3344445555544333211 133456677766644
No 106
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=46.92 E-value=6.8e+02 Score=31.33 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=13.8
Q ss_pred HHHHHHcHHHhHHHHHHHHHHHHHHHHHHHHH
Q 003495 456 YENLQTTLSTQQGEMAIFAREMRQRFQVTIER 487 (815)
Q Consensus 456 ~~~l~~~l~~q~~~~~~~~~q~~~~~~~~~~~ 487 (815)
--||.+.|.+=|.++..+.-+++..=..+++-
T Consensus 617 KldLfsaLg~akrq~ei~~~~~~~~d~ei~~l 648 (697)
T PF09726_consen 617 KLDLFSALGDAKRQLEIAQGQLRKKDKEIEEL 648 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555544444444444443333333333
No 107
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.46 E-value=4.2e+02 Score=31.04 Aligned_cols=32 Identities=25% Similarity=0.450 Sum_probs=19.1
Q ss_pred chhHHHHHHH-HHH-HHHHHHHHHHHHcHHHhHH
Q 003495 437 NSESIKEFLA-SEA-REAASIYENLQTTLSTQQG 468 (815)
Q Consensus 437 ~~~~~~~~~~-~~~-~~~~~~~~~l~~~l~~q~~ 468 (815)
-...|+..++ .+. +-...+++++...+..|++
T Consensus 322 Gs~alK~il~~~~s~ekVed~Ldev~et~d~~~E 355 (439)
T KOG2911|consen 322 GSEALKAILAQGGSTEKVEDVLDEVNETLDRQEE 355 (439)
T ss_pred hHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHH
Confidence 3344666665 222 3377777777777776665
No 108
>PF11101 DUF2884: Protein of unknown function (DUF2884); InterPro: IPR021307 Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.
Probab=46.05 E-value=4e+02 Score=28.42 Aligned_cols=177 Identities=8% Similarity=0.049 Sum_probs=92.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhccchHHHHHHHHHHHHhhhhhhhchhhhhhhHhHhHHHHHHHHhh
Q 003495 553 HMRRQTELVEARLVDFRENAVSSKLFLDGHASSVEGITTDAKRKWQAFAMQADNDAKDGADHSSAKHCRMELLLQECVNS 632 (815)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~mq~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~ 632 (815)
.++.|..+|..+-..||..+-.-......++.- +..-++. +-..+..+....+.++..|..+=++--..
T Consensus 43 L~~~Q~q~l~~Y~~~lr~~lP~~~~~a~d~l~l-------a~~ald~----V~~~~~g~~~~~~~l~~l~~~l~~~~~~~ 111 (229)
T PF11101_consen 43 LNAEQQQALQQYQQGLRQQLPWVVQLASDGLEL-------ARDALDE----VATSLLGDSNARDRLKQLMDQLKQQVDRR 111 (229)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------HHHHHHH----HHHHhcCChhHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888887776555444444433 2222222 11122222223444444443333333334
Q ss_pred hhhhhhhhHHHHHHHHHhhhhHHHhHHHHHHHHhhhhhHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhHHHHHHHHHhH
Q 003495 633 GESAFGHWKRTYESVNEMESKHVSSMISLTRNASYSNEQHDVEVDTARVATEEEVAKSSEDALQLIASASEQEQASIAEV 712 (815)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 712 (815)
+.+....|.-.+.++..++..--.+++.-+... ..+.+.+.+.++......+-.+ ..+..+..+..++..+|
T Consensus 112 ~~~~~d~~~l~~~~~~~~~~~~~~e~e~~~e~l------v~~s~g~i~~~l~~~m~~~~G~--~~l~~~~~~m~~l~~~i 183 (229)
T PF11101_consen 112 FYQRGDGFVLHAQAFSQLDEFFDQEFEQAIEQL------VQESMGSILQALGNEMGSSEGD--QNLQAFEQRMEGLQQQI 183 (229)
T ss_pred heeCCCcEEEcHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHccCCC--chHHHHHHHHHHHHHHH
Confidence 444444444555555444422222222222211 1122334444444444322222 44566667777888889
Q ss_pred HHhHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHhhh
Q 003495 713 LDDVKAHEKTINLFRESHSAQSASIKEKAQETFQQRY 749 (815)
Q Consensus 713 ~~~~~~~~~~l~~l~~~~~~~~~~i~~~~~~~~~~eY 749 (815)
+..+......|+..-...|..+..|.. .+..+.+.|
T Consensus 184 e~~~~~q~~~le~~a~~lC~~l~~L~~-~E~~L~~~I 219 (229)
T PF11101_consen 184 EQEMEAQAQELEQKAQALCDSLQQLDQ-QEQQLQQRI 219 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhc
Confidence 999999999999999999998888865 344455544
No 109
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=45.65 E-value=7.8e+02 Score=31.69 Aligned_cols=14 Identities=7% Similarity=-0.133 Sum_probs=11.5
Q ss_pred EEEeeccCCCCCCC
Q 003495 14 QLCSMRQSGPNGEL 27 (815)
Q Consensus 14 ~I~ayGqTGSGkt~ 27 (815)
+.+-+|+.|+|||.
T Consensus 25 ~~~i~G~NGsGKS~ 38 (1179)
T TIGR02168 25 ITGIVGPNGCGKSN 38 (1179)
T ss_pred cEEEECCCCCChhH
Confidence 45778999999984
No 110
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=45.02 E-value=4e+02 Score=28.14 Aligned_cols=69 Identities=14% Similarity=0.188 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhccchHHHHHHHHHHHHhhhhhhhchhhhhhhHhHhHHHHHHHHhhhhhhhhhhH
Q 003495 563 ARLVDFRENAVSSKLFLDGHASSVEGITTDAKRKWQAFAMQADNDAKDGADHSSAKHCRMELLLQECVNSGESAFGHWK 641 (815)
Q Consensus 563 ~~~~~~~~~~~~~~~~l~~~~~~mq~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~ 641 (815)
+++..+...+..-....+......+.++...+.++..|-..--.+| ++-|...+..-..........|.
T Consensus 149 ~K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF~~erv~df----------k~~l~~~le~~i~~q~~~~~~We 217 (224)
T cd07623 149 DKLDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERFEKNRVKDF----------KDIIIKYLESLLNTQQQLIKYWE 217 (224)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777788888777777777777888888888888888854333233 34444444444444444444454
No 111
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=44.80 E-value=2.5e+02 Score=25.71 Aligned_cols=27 Identities=15% Similarity=0.015 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHcHHHhHHHHHHH
Q 003495 447 SEAREAASIYENLQTTLSTQQGEMAIF 473 (815)
Q Consensus 447 ~~~~~~~~~~~~l~~~l~~q~~~~~~~ 473 (815)
.+..+.+....+....|..|...+..-
T Consensus 61 ~ll~~l~~~~~~~~~~l~~q~~~l~~~ 87 (127)
T smart00502 61 QLLEDLEEQKENKLKVLEQQLESLTQK 87 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555544433
No 112
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=44.35 E-value=11 Score=47.10 Aligned_cols=50 Identities=18% Similarity=0.352 Sum_probs=34.2
Q ss_pred CCCCCcceEEEeeccCCCCCCCCCCCCcHHHHHHHHHHHh--hhCCCceEEEEeEEEE
Q 003495 6 EKEKGVNVQLCSMRQSGPNGELPPEAGVIPRAVQQIFDTL--ESQNAEYSVKVTFLEL 61 (815)
Q Consensus 6 ~~~~GyN~~I~ayGqTGSGkt~t~~~GIIPRal~~LF~~i--~~~~~~~sV~vS~lEI 61 (815)
..++|.|+.|+| +||||||. .+++| ++..|+..- ...+.-+.++||=+--
T Consensus 33 ~i~~G~nvLiiA--PTGsGKTe---AAfLp-il~~l~~~~~~~~~~~i~~lYIsPLkA 84 (814)
T COG1201 33 EIHSGENVLIIA--PTGSGKTE---AAFLP-VINELLSLGKGKLEDGIYALYISPLKA 84 (814)
T ss_pred HHhCCCceEEEc--CCCCChHH---HHHHH-HHHHHHhccCCCCCCceEEEEeCcHHH
Confidence 457999999886 99999994 47777 677777652 1123356666665533
No 113
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=44.07 E-value=5.2e+02 Score=29.24 Aligned_cols=44 Identities=11% Similarity=-0.000 Sum_probs=22.2
Q ss_pred HHHHHHcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003495 456 YENLQTTLSTQQGEMAIFAREMRQRFQVTIERTKDIAEYTNGFLQKL 502 (815)
Q Consensus 456 ~~~l~~~l~~q~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~~ff~~l 502 (815)
.+-+.+-+.+..+.....+.+..+++..++.. |+....+|..+=
T Consensus 150 ~~G~~~a~~~y~d~a~n~a~~~~~~~~~af~g---m~dal~~fvttG 193 (332)
T TIGR01541 150 LAGARSGLADYGETATNVASAAAQLATNAFGG---MASNIAQMLTTG 193 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHh
Confidence 34444445555555555555666555555433 334445555443
No 114
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=44.03 E-value=7.3e+02 Score=30.90 Aligned_cols=34 Identities=21% Similarity=0.088 Sum_probs=21.4
Q ss_pred HhHhHHHHHHHHhhhhhhhhhhHHHHHHHHHhhh
Q 003495 619 HCRMELLLQECVNSGESAFGHWKRTYESVNEMES 652 (815)
Q Consensus 619 ~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (815)
|...+..||..+-++..-.+....++.+..++.+
T Consensus 759 k~~~~q~lq~~ll~ve~~~k~~e~~~~~~~~ler 792 (961)
T KOG4673|consen 759 KRKHKQELQEVLLHVELIQKDLEREKASRLDLER 792 (961)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhhCHHHHhhccc
Confidence 4555556666666666666666666666666654
No 115
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=43.96 E-value=3.6e+02 Score=27.27 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=24.6
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhccchHHHHHHHHHHHHhh
Q 003495 564 RLVDFRENAVSSKLFLDGHASSVEGITTDAKRKWQAFAMQAD 605 (815)
Q Consensus 564 ~~~~~~~~~~~~~~~l~~~~~~mq~~t~~~~~~~~~~~~~~~ 605 (815)
++..+.+.+......++.....+..++...+.++..|-....
T Consensus 146 ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~~~ 187 (218)
T cd07596 146 KVEELEEELEEAESALEEARKRYEEISERLKEELKRFHEERA 187 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555666667777777765443
No 116
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=43.64 E-value=7.9e+02 Score=31.18 Aligned_cols=19 Identities=11% Similarity=0.207 Sum_probs=11.4
Q ss_pred hhccchHHHHHHHHHHHHh
Q 003495 586 VEGITTDAKRKWQAFAMQA 604 (815)
Q Consensus 586 mq~~t~~~~~~~~~~~~~~ 604 (815)
+|+.-.+|..+....+.+.
T Consensus 506 iQethldyR~els~lA~r~ 524 (1265)
T KOG0976|consen 506 IQETHLDYRSELSELAHRK 524 (1265)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 4555666777766655543
No 117
>PRK04328 hypothetical protein; Provisional
Probab=43.53 E-value=23 Score=37.84 Aligned_cols=50 Identities=20% Similarity=0.189 Sum_probs=34.2
Q ss_pred CCCCCCCCCC---cceEEEeeccCCCCCCCCCCCCcHHHHHHHHHHHhhhCCCceEEEEeEEE
Q 003495 1 MSGRHEKEKG---VNVQLCSMRQSGPNGELPPEAGVIPRAVQQIFDTLESQNAEYSVKVTFLE 60 (815)
Q Consensus 1 ~~~l~~~~~G---yN~~I~ayGqTGSGkt~t~~~GIIPRal~~LF~~i~~~~~~~sV~vS~lE 60 (815)
|+|||..+.| ....++.+|++|+|||. -+++-++..+.. .+..+.+|+-|
T Consensus 9 i~~LD~lL~GGip~gs~ili~G~pGsGKT~--------l~~~fl~~~~~~--ge~~lyis~ee 61 (249)
T PRK04328 9 IPGMDEILYGGIPERNVVLLSGGPGTGKSI--------FSQQFLWNGLQM--GEPGVYVALEE 61 (249)
T ss_pred chhHHHHhcCCCcCCcEEEEEcCCCCCHHH--------HHHHHHHHHHhc--CCcEEEEEeeC
Confidence 6789998877 68999999999999972 234445554432 34456666544
No 118
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=43.42 E-value=4.8e+02 Score=28.61 Aligned_cols=208 Identities=9% Similarity=0.115 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHhHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcH
Q 003495 384 LGIHEKAVIDLKKKVTASRALYCSHMEAVQNVVRLHKACSNANLEEISAFASSNSESIKEFLASEAREAASIYENLQTTL 463 (815)
Q Consensus 384 ~~~~~~~~~el~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 463 (815)
+.....++.++.....-+...+...+.+|.+.-......+...|+.=.-....... +-.+--....+.-.+|+.--
T Consensus 1 i~~rr~sl~el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~----le~~~~~~l~~ak~eLqe~e 76 (258)
T PF15397_consen 1 IRNRRTSLQELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDI----LEYSNHKQLQQAKAELQEWE 76 (258)
T ss_pred CccHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHH----HHccChHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Q 003495 464 STQQGEMAIFAREMRQRFQVTIERTKDIAEYTNGFLQKLLE--------ESKSLENYAVQADENQMKSIADFQKAYEDQT 535 (815)
Q Consensus 464 ~~q~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~~ff~~l~~--------~a~~l~~~~~~~~~~~~~~l~~~~~~~~~~~ 535 (815)
..-...++.|.+|+++...+.-.+.+.++ |+.|+.. ...+|..-+...-..+...+.+|.+.++..-
T Consensus 77 ek~e~~l~~Lq~ql~~l~akI~k~~~el~-----~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el 151 (258)
T PF15397_consen 77 EKEESKLSKLQQQLEQLDAKIQKTQEELN-----FLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQMEL 151 (258)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhccchHHHHHHHHHHHHhhhhhhhch
Q 003495 536 KSDTEKLIADVTSLVSSHMRRQTELVEARLVDFRENAVSSKLFLDGHASSVEGITTDAKRKWQAFAMQADNDAKDGA 612 (815)
Q Consensus 536 ~~e~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~mq~~t~~~~~~~~~~~~~~~~~~~~~~ 612 (815)
+.=..+...+-..++.+-+.+--.-... .+.... ..+..++.+|.. .++.++.|-+... .....+
T Consensus 152 ~~l~~~~q~k~~~il~~~~~k~~~~~~~---~l~~~~-~~N~~m~kei~~-------~re~i~el~e~I~-~L~~eV 216 (258)
T PF15397_consen 152 ASLSRKIQEKKEEILSSAAEKTQSPMQP---ALLQRT-LENQVMQKEIVQ-------FREEIDELEEEIP-QLRAEV 216 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchH---HHHHHH-HHHHHHHHHHHH-------HHHHHHHHHHHHH-HHHHHH
No 119
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=43.17 E-value=6.8e+02 Score=30.29 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=23.6
Q ss_pred hcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhh
Q 003495 534 QTKSDTEKLIADVTSLVSSHMRRQTELVEARLVDFRENAVSS 575 (815)
Q Consensus 534 ~~~~e~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (815)
.|...=.+.+..|...|. +..++..-+..-+..|+.+..=+
T Consensus 299 ~Ak~~V~~~~~~l~~~l~-~~~~~~~~l~~e~~~v~~sY~L~ 339 (560)
T PF06160_consen 299 EAKKYVEKNLKELYEYLE-HAKEQNKELKEELERVSQSYTLN 339 (560)
T ss_pred HHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCC
Confidence 344455555666666654 34556666666677766665433
No 120
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=42.88 E-value=27 Score=37.81 Aligned_cols=100 Identities=19% Similarity=0.261 Sum_probs=56.9
Q ss_pred EEeeccCCCCCCCCCCCCcHHHHHHHHHHHhhhCCCceEEEEeEEEEEcccccccCCCcchhhhhhhhhccCccceeecC
Q 003495 15 LCSMRQSGPNGELPPEAGVIPRAVQQIFDTLESQNAEYSVKVTFLELYNEEITDLLAPDEISRAAVEDKQKKQLPLMEDG 94 (815)
Q Consensus 15 I~ayGqTGSGkt~t~~~GIIPRal~~LF~~i~~~~~~~sV~vS~lEIYnE~V~DLL~~~~~~~~~~~~~~~k~L~i~ed~ 94 (815)
++-||..|+||+ -.+..++.....++ +-.+||..+.+.||-.--. ...+.+. ..
T Consensus 55 vLL~G~rGtGKS---------SlVkall~~y~~~G------LRlIev~k~~L~~l~~l~~----~l~~~~~-kF------ 108 (249)
T PF05673_consen 55 VLLWGARGTGKS---------SLVKALLNEYADQG------LRLIEVSKEDLGDLPELLD----LLRDRPY-KF------ 108 (249)
T ss_pred eEEecCCCCCHH---------HHHHHHHHHHhhcC------ceEEEECHHHhccHHHHHH----HHhcCCC-CE------
Confidence 445999999997 35566666655544 6679999998877743110 0011111 11
Q ss_pred CCCeEecCcEEEEe-cCHHHHHHHhHhhhhccccccccccCCCCCCeeEE
Q 003495 95 KGGVLVRGLEEEIV-TSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLF 143 (815)
Q Consensus 95 ~~gv~V~gLtev~V-~S~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~If 143 (815)
-+++.+|+--.- .+...+..+|+-|...| ..-..+..+|.|-|.|=
T Consensus 109 --Ilf~DDLsFe~~d~~yk~LKs~LeGgle~~-P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 109 --ILFCDDLSFEEGDTEYKALKSVLEGGLEAR-PDNVLIYATSNRRHLVP 155 (249)
T ss_pred --EEEecCCCCCCCcHHHHHHHHHhcCccccC-CCcEEEEEecchhhccc
Confidence 233444442111 23456666666666555 44456677788888763
No 121
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=41.51 E-value=1.2e+03 Score=32.55 Aligned_cols=138 Identities=18% Similarity=0.197 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHH
Q 003495 440 SIKEFLASEAREAA---SIYENLQTTLSTQQGEMAIFAREMRQRFQVTIERTKDIA-------------EYTNGFLQKLL 503 (815)
Q Consensus 440 ~~~~~~~~~~~~~~---~~~~~l~~~l~~q~~~~~~~~~q~~~~~~~~~~~~~~~s-------------~~~~~ff~~l~ 503 (815)
.|+..+...-.+.+ ..+..|+..|..|++.++.+..++..++...-.....++ +....=|++|.
T Consensus 693 ~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~ 772 (1822)
T KOG4674|consen 693 NLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLS 772 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555 558999999999999999999999988877655544443 22233344444
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 003495 504 EESKSLENYAVQADENQMKSIADFQKAYEDQTKSDTEKLIADVTSLVSSHMRRQTELVEARLVDFRENAVSSKLFLDGHA 583 (815)
Q Consensus 504 ~~a~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 583 (815)
..-.+|+..+..- .-+...-++--...++.+=++|-.|..+...-+.. +...+.++|+........|..+.
T Consensus 773 ~e~~~L~~~l~~l--------Qt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~k-lq~~~~~~r~l~~~~~~~l~~~~ 843 (1822)
T KOG4674|consen 773 AEQESLQLLLDNL--------QTQKNELEESEMATKDKCESRIKELERELQKLKKK-LQEKSSDLRELTNSLEKQLENAQ 843 (1822)
T ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhHHHHHH
Confidence 4444444444443 22333333333444555556777777766655555 77888888887777777777776
Q ss_pred hhh
Q 003495 584 SSV 586 (815)
Q Consensus 584 ~~m 586 (815)
..+
T Consensus 844 ~~i 846 (1822)
T KOG4674|consen 844 NLV 846 (1822)
T ss_pred HHH
Confidence 665
No 122
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=41.31 E-value=8e+02 Score=30.56 Aligned_cols=14 Identities=29% Similarity=0.223 Sum_probs=8.3
Q ss_pred hhHHHHHHHHHHHH
Q 003495 194 KSLLTLGRVINALV 207 (815)
Q Consensus 194 kSL~aLg~VI~aL~ 207 (815)
+|=..+.+||..|.
T Consensus 82 ~Sr~v~~~VV~~L~ 95 (754)
T TIGR01005 82 SSNEILKQVVDKLG 95 (754)
T ss_pred ccHHHHHHHHHHcC
Confidence 45556666666654
No 123
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=38.58 E-value=9.3e+02 Score=30.54 Aligned_cols=114 Identities=20% Similarity=0.188 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH--HhhHHhHHHHHHHHhhchhHHHHHHHHHHHHHHHH---HHHHHHcHHHhH
Q 003495 393 DLKKKVTASRALYCSHMEAVQNVVRLHK--ACSNANLEEISAFASSNSESIKEFLASEAREAASI---YENLQTTLSTQQ 467 (815)
Q Consensus 393 el~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~l~~q~ 467 (815)
+|+.++..+.......-.+...+...+. ...+..+.+-.+.++..+..|..-+.+.-.+..++ +.-+.+-|.---
T Consensus 89 ~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~ 168 (769)
T PF05911_consen 89 ELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRN 168 (769)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444433333333333333222 23444455555555566666666666666665555 455556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003495 468 GEMAIFAREMRQRFQVTIERTKDIAEYTNGFLQKLLEESKSLENYAV 514 (815)
Q Consensus 468 ~~~~~~~~q~~~~~~~~~~~~~~~s~~~~~ff~~l~~~a~~l~~~~~ 514 (815)
+|.+.-++-..-++.+.+++.+.|+ +|..+..+|..++.
T Consensus 169 ~E~~~~~~~ae~a~kqhle~vkkia--------kLEaEC~rLr~l~r 207 (769)
T PF05911_consen 169 EEREYSRRAAEAASKQHLESVKKIA--------KLEAECQRLRALVR 207 (769)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHh
Confidence 6777777777888888888888888 67777777765553
No 124
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=38.57 E-value=36 Score=36.36 Aligned_cols=26 Identities=15% Similarity=0.141 Sum_probs=22.3
Q ss_pred CCCCCCCCCC---cceEEEeeccCCCCCC
Q 003495 1 MSGRHEKEKG---VNVQLCSMRQSGPNGE 26 (815)
Q Consensus 1 ~~~l~~~~~G---yN~~I~ayGqTGSGkt 26 (815)
|+||+.++.| ....++.+|..|+|||
T Consensus 9 I~glD~~l~GG~p~g~~~lI~G~pGsGKT 37 (260)
T COG0467 9 IPGLDEILGGGLPRGSVVLITGPPGTGKT 37 (260)
T ss_pred CcchHHHhcCCCcCCcEEEEEcCCCCcHH
Confidence 6788888886 5678889999999998
No 125
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.45 E-value=5.8e+02 Score=28.11 Aligned_cols=33 Identities=9% Similarity=0.277 Sum_probs=16.6
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003495 293 KSNLDQTIKLLNNTEEQLKKCQYALKEKDFIIS 325 (815)
Q Consensus 293 k~~l~~~~~~l~~~~~~l~~~~~~l~e~e~~i~ 325 (815)
+.+++++..++..++.++..+...+.++..++.
T Consensus 72 ~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~ 104 (265)
T COG3883 72 QKEIDQSKAEIKKLQKEIAELKENIVERQELLK 104 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555554443
No 126
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=38.35 E-value=6.2e+02 Score=28.45 Aligned_cols=31 Identities=19% Similarity=0.161 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003495 296 LDQTIKLLNNTEEQLKKCQYALKEKDFIISE 326 (815)
Q Consensus 296 l~~~~~~l~~~~~~l~~~~~~l~e~e~~i~~ 326 (815)
.+.+...|....+.+.+.+..+..|+.++.-
T Consensus 99 ~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ 129 (306)
T PF04849_consen 99 NEALEEQLGAALEQVEQLRHELSMKDELLQI 129 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555566666677777777766543
No 127
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=38.11 E-value=7.4e+02 Score=29.29 Aligned_cols=56 Identities=16% Similarity=0.216 Sum_probs=26.5
Q ss_pred ccceeecCCCCeEecCcEEEEecCHHHHHHHhHhhhhccccccccccC-CCCCCeeEEEEEEEEee
Q 003495 87 QLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNK-QSSRSHSLFSITIHIKE 151 (815)
Q Consensus 87 ~L~i~ed~~~gv~V~gLtev~V~S~~e~~~lL~~G~~~R~~~~T~~N~-~SSRSH~IftI~V~~~~ 151 (815)
.+++..|+...-|- --+...+..++..+...-+-+ .+|. ..--.|.+|-..|....
T Consensus 104 ~irivRd~~pnrym---vLIkFr~q~da~~Fy~efNGk------~Fn~le~e~Chll~V~~ve~~~ 160 (493)
T KOG0804|consen 104 DIRIVRDGMPNRYM---VLIKFRDQADADTFYEEFNGK------QFNSLEPEVCHLLYVDRVEVTE 160 (493)
T ss_pred eeEEeecCCCceEE---EEEEeccchhHHHHHHHcCCC------cCCCCCccceeEEEEEEEEEEe
Confidence 45555555443322 134455666666655432111 1221 12246888877776553
No 128
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=37.92 E-value=7.3e+02 Score=29.15 Aligned_cols=81 Identities=17% Similarity=0.239 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHhHHHHHHHHh--hchhHHHHHHHHHHHHHHHH---HHHHHHcHH
Q 003495 390 AVIDLKKKVTASRALYCSHMEAVQNVVRLHKACSNANLEEISAFAS--SNSESIKEFLASEAREAASI---YENLQTTLS 464 (815)
Q Consensus 390 ~~~el~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~l~~~l~ 464 (815)
.+..|+..+.-++..|......+......+...+.. +...+..+. ..-.-+...-..|..+.+.+ ++||+..+.
T Consensus 152 Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~-~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE 230 (424)
T PF03915_consen 152 EVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKK-VKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDLVE 230 (424)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777766666666655433 333333333 11111333333333333333 556666665
Q ss_pred HhHHHHH
Q 003495 465 TQQGEMA 471 (815)
Q Consensus 465 ~q~~~~~ 471 (815)
+.+..+.
T Consensus 231 ~LRkDV~ 237 (424)
T PF03915_consen 231 DLRKDVV 237 (424)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 129
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=37.89 E-value=8.6e+02 Score=29.98 Aligned_cols=132 Identities=14% Similarity=0.154 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHHhcHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhccchHHHHHHHH
Q 003495 522 KSIADFQKAYEDQTKSDTEKLIADVT--SLVSSHMRRQTELVEARLVDFRENAVSSKLFLDGHASSVEGITTDAKRKWQA 599 (815)
Q Consensus 522 ~~l~~~~~~~~~~~~~e~~~l~~~i~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~mq~~t~~~~~~~~~ 599 (815)
++|.+++..|-.-.-. --.|-+.+. .-+..-..++-.-|...++.+++.+..... ++..++.-...+.+.+.-
T Consensus 167 ~QL~Elq~~Fv~ltne-~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~q----E~~~Lq~q~dq~~~~Lqq 241 (617)
T PF15070_consen 167 EQLAELQDAFVKLTNE-NMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQ----EAQSLQEQRDQYLGHLQQ 241 (617)
T ss_pred HHHHHHHHHHHHHHHh-hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHH
Confidence 5566666666655522 211111111 122222333334466666666665544322 333333333446666666
Q ss_pred HHHHhhhhhhhchhhhhhhHhHh------HHHHHHH----HhhhhhhhhhhHHHHHHHHHhhhhHHHhHHHHHH
Q 003495 600 FAMQADNDAKDGADHSSAKHCRM------ELLLQEC----VNSGESAFGHWKRTYESVNEMESKHVSSMISLTR 663 (815)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~------e~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 663 (815)
|....+ --++-.++++..+ -+.||.. ...++......+.+++.+.-+. .+-+.|...++
T Consensus 242 y~a~~q----~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~-qqNqqL~~qls 310 (617)
T PF15070_consen 242 YVAAYQ----QLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALS-QQNQQLQAQLS 310 (617)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHH
Confidence 654322 2222333333322 1222221 1223445555555665555544 45555555554
No 130
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=37.05 E-value=5.9e+02 Score=27.77 Aligned_cols=76 Identities=8% Similarity=0.165 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcHHHHHHHHHHHHH
Q 003495 469 EMAIFAREMRQRFQVTIERTKDIAEYTNGFLQKLLEESKSLENYAVQADENQMKSIADFQKAYEDQTKSDTEKLIADVTS 548 (815)
Q Consensus 469 ~~~~~~~q~~~~~~~~~~~~~~~s~~~~~ff~~l~~~a~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~l~~~i~~ 548 (815)
....++.+++++-..-..+-.....-+++|.++=.+.++.|... .+-+.+|..+|..--+.++..|..
T Consensus 163 k~e~lr~e~E~ae~~~e~~kd~~~~~m~~~l~~e~e~~~~l~~L------------v~AQleYHr~A~eiLe~l~~~i~~ 230 (248)
T cd07619 163 KADALREEMEEAANRMEICRDQLSADMYSFVAKEIDYANYFQTL------------IEVQAEYHRKSLELLQSVLPQIKA 230 (248)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677778777766665553344555677877777666665544 445788999999999999999999
Q ss_pred HHHHhHHH
Q 003495 549 LVSSHMRR 556 (815)
Q Consensus 549 l~~~~~~~ 556 (815)
++.++..+
T Consensus 231 ~~~~~~~k 238 (248)
T cd07619 231 HQEAWVEK 238 (248)
T ss_pred HHHhcccC
Confidence 99877654
No 131
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.99 E-value=6.1e+02 Score=27.95 Aligned_cols=121 Identities=18% Similarity=0.181 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HHHHHhhHH--HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHH
Q 003495 350 ELAQQIGSLCDIVDLSTCQQNEHLKHVEKL--CHSLLGIHE--KAVIDLKKKVTASRALYCSHMEAVQNVVRLHKACSNA 425 (815)
Q Consensus 350 ~l~~~~~~l~~~l~~~~~~~~~~l~~~~~~--~~~~~~~~~--~~~~el~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 425 (815)
.+.+++..++..|.....-...++..|... -..|++.-. +.+.|+-.|+..+ ...+..=+++++.++.+ ..
T Consensus 84 ~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t~Yidvil~SkSfsD~IsRvtAi----~~iv~aDk~ile~qk~d-k~ 158 (265)
T COG3883 84 KLQKEIAELKENIVERQELLKKRARAMQVNGTATSYIDVILNSKSFSDLISRVTAI----SVIVDADKKILEQQKED-KK 158 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHccCcHHHHHHHHHHH----HHHHHHhHHHHHHHHHH-HH
Confidence 445555555555544333333444443221 122333322 1355665565444 33344445566655532 33
Q ss_pred hHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcHHHhHHHHHHHHHHHHH
Q 003495 426 NLEEISAFASSNSESIKEFLASEAREAASIYENLQTTLSTQQGEMAIFAREMRQ 479 (815)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~q~~~~~~~~~q~~~ 479 (815)
.+++-...+..... -+..+..++....++|.+..++++..+..++...-.
T Consensus 159 ~Le~kq~~l~~~~e----~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~ 208 (265)
T COG3883 159 SLEEKQAALEDKLE----TLVALQNELETQLNSLNSQKAEKNALIAALAAKEAS 208 (265)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443333333222 223444555556666666666666666665554433
No 132
>PRK09039 hypothetical protein; Validated
Probab=36.87 E-value=6.7e+02 Score=28.41 Aligned_cols=42 Identities=14% Similarity=0.028 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003495 467 QGEMAIFAREMRQRFQVTIERTKDIAEYTNGFLQKLLEESKSLENYAVQA 516 (815)
Q Consensus 467 ~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~~ff~~l~~~a~~l~~~~~~~ 516 (815)
..+++..+....+++.....-++.|. .|..+...|+..++..
T Consensus 122 ~~~L~~~k~~~se~~~~V~~L~~qI~--------aLr~Qla~le~~L~~a 163 (343)
T PRK09039 122 AQELDSEKQVSARALAQVELLNQQIA--------ALRRQLAALEAALDAS 163 (343)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444 4444456666666554
No 133
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=35.79 E-value=1.2e+03 Score=30.97 Aligned_cols=35 Identities=11% Similarity=-0.048 Sum_probs=21.5
Q ss_pred hhcccCCcCCCCcccccCCCCcchhhhccCCchHH
Q 003495 748 RYMDYEHTGTTPTRCESEVPSKGTIESLRAMPMET 782 (815)
Q Consensus 748 eY~~~~ptg~TP~k~~~~~ps~~sIe~~rt~~~e~ 782 (815)
.|+.+---|.+|..++.--|...+-|++-..-++.
T Consensus 1040 k~~~~l~~~~~tE~~~~~~~~~~~~Eeleae~~~~ 1074 (1293)
T KOG0996|consen 1040 KELKKLSLCNMTETRPQIELDVESPEELEAEMLED 1074 (1293)
T ss_pred HhhCccccccchhhccccccccCChHHHHhhhcHh
Confidence 66666777777766666666665555555544444
No 134
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=35.18 E-value=1.2e+03 Score=30.69 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=9.0
Q ss_pred CCcCCCCcccccCCCCc
Q 003495 753 EHTGTTPTRCESEVPSK 769 (815)
Q Consensus 753 ~ptg~TP~k~~~~~ps~ 769 (815)
.|-+++-.|-....|..
T Consensus 839 ~~~~e~~~ka~~~cp~~ 855 (1074)
T KOG0250|consen 839 EPRAEEDQKARTECPEE 855 (1074)
T ss_pred cchhhhCchhhhhCccc
Confidence 44445445555556655
No 135
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=34.18 E-value=6.1e+02 Score=27.16 Aligned_cols=94 Identities=10% Similarity=0.057 Sum_probs=58.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHhHHHHHHHHhhc-----------hhHHHHHHHHHHH
Q 003495 382 SLLGIHEKAVIDLKKKVTASRALYCSHMEAVQNVVRLHKACSNANLEEISAFASSN-----------SESIKEFLASEAR 450 (815)
Q Consensus 382 ~~~~~~~~~~~el~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ 450 (815)
.+|..-.......-.+..+++++.......+..+++.=......+|.+++..++.. ..-+-.-|+.-+.
T Consensus 25 khFg~lC~~~a~ytRKtArLRDk~D~lak~l~~yA~~E~~~l~~~L~~fae~la~vqDYRqa~v~RlE~KVv~pL~~Y~~ 104 (219)
T PF06730_consen 25 KHFGELCQLFAAYTRKTARLRDKGDELAKQLQDYANTENPNLKLGLKNFAECLAKVQDYRQAEVERLEAKVVEPLSQYGT 104 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34444444455556677777777777666776666654445555565555555432 2224455666667
Q ss_pred HHHHHHHHHHHcHHHhHHHHHHHHH
Q 003495 451 EAASIYENLQTTLSTQQGEMAIFAR 475 (815)
Q Consensus 451 ~~~~~~~~l~~~l~~q~~~~~~~~~ 475 (815)
-+|..=++|.+......-|+..+++
T Consensus 105 ~cK~~r~elK~~~~ar~kEikq~~~ 129 (219)
T PF06730_consen 105 ICKHARDELKKFNKARNKEIKQLKQ 129 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888777776653
No 136
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=33.97 E-value=4.2e+02 Score=31.09 Aligned_cols=29 Identities=7% Similarity=0.149 Sum_probs=0.0
Q ss_pred hHHHhHHHHHHhHHHHhhhhhcchHHHHH
Q 003495 711 EVLDDVKAHEKTINLFRESHSAQSASIKE 739 (815)
Q Consensus 711 ~~~~~~~~~~~~l~~l~~~~~~~~~~i~~ 739 (815)
++.+........+..|+-||-..|..|+-
T Consensus 348 ~~~~~~~~VL~EV~aL~PDHE~RLeAIer 376 (424)
T PF03915_consen 348 DPHEARDQVLGEVRALQPDHESRLEAIER 376 (424)
T ss_dssp -----------------------------
T ss_pred ChhhHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 44444556667778888999999999874
No 137
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=33.37 E-value=6.8e+02 Score=27.43 Aligned_cols=33 Identities=30% Similarity=0.400 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHcHHHhHHHHHHHHHHHHHH
Q 003495 444 FLASEAREAASIYENLQTTLSTQQGEMAIFAREMRQR 480 (815)
Q Consensus 444 ~~~~~~~~~~~~~~~l~~~l~~q~~~~~~~~~q~~~~ 480 (815)
+|.+...+-..++..++. .|.|.-.|+|++.-.
T Consensus 151 fLESELdEke~llesvqR----LkdEardlrqelavr 183 (333)
T KOG1853|consen 151 FLESELDEKEVLLESVQR----LKDEARDLRQELAVR 183 (333)
T ss_pred HHHHHhhHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 444455554444544443 466666677766543
No 138
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.04 E-value=9.7e+02 Score=29.13 Aligned_cols=13 Identities=23% Similarity=0.312 Sum_probs=8.0
Q ss_pred CCCcceEEEeecc
Q 003495 8 EKGVNVQLCSMRQ 20 (815)
Q Consensus 8 ~~GyN~~I~ayGq 20 (815)
-.|-|+.|+.||.
T Consensus 212 RS~tn~Si~sFGe 224 (741)
T KOG4460|consen 212 RSPTNVSILSFGE 224 (741)
T ss_pred CCCccceeeccCC
Confidence 3466666666664
No 139
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=33.03 E-value=1e+03 Score=29.28 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcHHHhHHHHHHHHHHHHH
Q 003495 440 SIKEFLASEAREAASIYENLQTTLSTQQGEMAIFAREMRQ 479 (815)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~l~~~l~~q~~~~~~~~~q~~~ 479 (815)
.+..++..+......-+..+.+.+...+.+++.+.+++..
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~ 416 (650)
T TIGR03185 377 QLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKIST 416 (650)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555666666556666777777777778888777777753
No 140
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=33.01 E-value=5.9e+02 Score=26.62 Aligned_cols=46 Identities=11% Similarity=-0.011 Sum_probs=24.7
Q ss_pred hccchHHHHHHHHHHHHhhhhhhhchhhhhhhHhHhHHHHHHHHhh
Q 003495 587 EGITTDAKRKWQAFAMQADNDAKDGADHSSAKHCRMELLLQECVNS 632 (815)
Q Consensus 587 q~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~ 632 (815)
+.+.....++|+.|-..-..++.+....-+..+-++-.-+-+.|..
T Consensus 150 e~f~~~~~~E~~rF~~~K~~dlk~~l~~~A~~qi~~~~~~~~~W~~ 195 (201)
T cd07622 150 NEFVKKALEDVERFKKQKVRDLKEILISYAKLQIKLAKKGLQTWTN 195 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344446777777766555556555555555555553333333433
No 141
>PRK10869 recombination and repair protein; Provisional
Probab=32.99 E-value=9.5e+02 Score=29.02 Aligned_cols=39 Identities=13% Similarity=0.331 Sum_probs=24.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003495 464 STQQGEMAIFAREMRQRFQVTIERTKDIAEYTNGFLQKL 502 (815)
Q Consensus 464 ~~q~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~~ff~~l 502 (815)
..-.+.+..|..++.++.....+.++.+|+.=..+...|
T Consensus 337 ~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l 375 (553)
T PRK10869 337 DDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKEL 375 (553)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777777777777777777777774444433333
No 142
>PRK10626 hypothetical protein; Provisional
Probab=32.95 E-value=6.7e+02 Score=27.22 Aligned_cols=33 Identities=12% Similarity=0.250 Sum_probs=21.0
Q ss_pred HHHHhHHHhHHHHHHhHHHHhhhhhcchHHHHH
Q 003495 707 ASIAEVLDDVKAHEKTINLFRESHSAQSASIKE 739 (815)
Q Consensus 707 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~ 739 (815)
++...|+...+.....++.+-.++|..+..|..
T Consensus 197 glq~~Ie~e~~~q~~d~~~~~~~vC~~~~~le~ 229 (239)
T PRK10626 197 GLQQAIQTEWKNQEKDFQQFGKDVCSRVVTLED 229 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666666666666666654
No 143
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=32.70 E-value=9.7e+02 Score=29.00 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Q 003495 391 VIDLKKKVTASRALYCSHMEAVQ 413 (815)
Q Consensus 391 ~~el~~~~~~~~~~~~~~~~~l~ 413 (815)
+.++++.+......|+..+..|.
T Consensus 149 y~~~rk~ll~~~~~~G~a~~~le 171 (569)
T PRK04778 149 YRELRKSLLANRFSFGPALDELE 171 (569)
T ss_pred HHHHHHHHHhcCccccchHHHHH
Confidence 34444444444444444443333
No 144
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=32.40 E-value=8.8e+02 Score=28.46 Aligned_cols=8 Identities=0% Similarity=0.011 Sum_probs=3.3
Q ss_pred eEEecCCC
Q 003495 236 IIATVSPA 243 (815)
Q Consensus 236 ~IatISP~ 243 (815)
++++++|+
T Consensus 25 ~~~~~s~s 32 (420)
T COG4942 25 AVLAAAFS 32 (420)
T ss_pred cccccchh
Confidence 33444443
No 145
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=31.96 E-value=6.7e+02 Score=26.95 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=27.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 003495 383 LLGIHEKAVIDLKKKVTASRALYCSHMEAVQNVVRLHK 420 (815)
Q Consensus 383 ~~~~~~~~~~el~~~~~~~~~~~~~~~~~l~~~~~~~~ 420 (815)
+++.+...+.|+++.+..|......++++|..|-.+..
T Consensus 26 ~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn 63 (230)
T PF10146_consen 26 SLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDIN 63 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566778888888888888888888877766543
No 146
>PRK06893 DNA replication initiation factor; Validated
Probab=31.68 E-value=20 Score=37.81 Aligned_cols=18 Identities=0% Similarity=-0.219 Sum_probs=15.8
Q ss_pred CCcceEEEeeccCCCCCC
Q 003495 9 KGVNVQLCSMRQSGPNGE 26 (815)
Q Consensus 9 ~GyN~~I~ayGqTGSGkt 26 (815)
.++|-.++-||++|+|||
T Consensus 36 ~~~~~~l~l~G~~G~GKT 53 (229)
T PRK06893 36 DLQQPFFYIWGGKSSGKS 53 (229)
T ss_pred ccCCCeEEEECCCCCCHH
Confidence 367778999999999998
No 147
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=31.02 E-value=1.3e+03 Score=29.88 Aligned_cols=27 Identities=19% Similarity=0.159 Sum_probs=16.8
Q ss_pred CCCCcceEEEeeccCCCCCCCCCCCCcHHHHHHHHH
Q 003495 7 KEKGVNVQLCSMRQSGPNGELPPEAGVIPRAVQQIF 42 (815)
Q Consensus 7 ~~~GyN~~I~ayGqTGSGkt~t~~~GIIPRal~~LF 42 (815)
|..|+| +-+|+.|+||| -|-.|+.++|
T Consensus 21 f~~~~~---~i~G~NGsGKS------~ildAi~~~l 47 (1164)
T TIGR02169 21 FSKGFT---VISGPNGSGKS------NIGDAILFAL 47 (1164)
T ss_pred ecCCeE---EEECCCCCCHH------HHHHHHHHHh
Confidence 445554 45899999997 2344555544
No 148
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=31.00 E-value=5.5e+02 Score=25.61 Aligned_cols=32 Identities=13% Similarity=0.213 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHcHHHhHHHHHHHHHHH
Q 003495 446 ASEAREAASIYENLQTTLSTQQGEMAIFAREM 477 (815)
Q Consensus 446 ~~~~~~~~~~~~~l~~~l~~q~~~~~~~~~q~ 477 (815)
...+....+-+..|+.-+..|..++.+|.+.+
T Consensus 96 e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i 127 (146)
T PF08702_consen 96 ETKIINQPSNIRVLQNILRSNRQKIQRLEQDI 127 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445556667777777777777665543
No 149
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=30.71 E-value=47 Score=35.08 Aligned_cols=50 Identities=18% Similarity=0.233 Sum_probs=31.6
Q ss_pred CCCCCCCCC-Cc--ceEEEeeccCCCCCCCCCCCCcHHHHHHHHHHHhhhCCCceEEEEeEEE
Q 003495 1 MSGRHEKEK-GV--NVQLCSMRQSGPNGELPPEAGVIPRAVQQIFDTLESQNAEYSVKVTFLE 60 (815)
Q Consensus 1 ~~~l~~~~~-Gy--N~~I~ayGqTGSGkt~t~~~GIIPRal~~LF~~i~~~~~~~sV~vS~lE 60 (815)
|+|||..+. |+ ...++.+|++|+|||. -+++-++..+. ..+..+.+|+-|
T Consensus 7 i~~LD~~l~GG~~~gs~~lI~G~pGsGKT~--------la~~~l~~~~~--~ge~~lyvs~ee 59 (237)
T TIGR03877 7 IPGMDEILHGGIPERNVVLLSGGPGTGKSI--------FSQQFLWNGLQ--MGEPGIYVALEE 59 (237)
T ss_pred cHhHHHHhcCCCcCCeEEEEEcCCCCCHHH--------HHHHHHHHHHH--cCCcEEEEEeeC
Confidence 567777554 54 5788899999999982 23444555443 234556666543
No 150
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=30.57 E-value=8.2e+02 Score=27.52 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhhhhh---hhHHHHHHHHHHhcH
Q 003495 504 EESKSLENYAVQADENQM---KSIADFQKAYEDQTK 536 (815)
Q Consensus 504 ~~a~~l~~~~~~~~~~~~---~~l~~~~~~~~~~~~ 536 (815)
.+.-.|..++..+...+. ..|.+|+.+|.++.+
T Consensus 255 ~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~ 290 (306)
T PF04849_consen 255 AENEELQQHLQASKESQRQLQAELQELQDKYAECMA 290 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677766655444 367788888877643
No 151
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=30.42 E-value=1.2e+03 Score=29.58 Aligned_cols=64 Identities=9% Similarity=-0.016 Sum_probs=29.7
Q ss_pred HHHhhhhhHHHHHHHHHHHhhHH--HHHHhHHHHHHHHHHhHHHHHHHHHhHHHhHHHHHHhHHHH
Q 003495 663 RNASYSNEQHDVEVDTARVATEE--EVAKSSEDALQLIASASEQEQASIAEVLDDVKAHEKTINLF 726 (815)
Q Consensus 663 ~~~~~~n~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 726 (815)
+++.++-....+.+..-.++++. .|...|.-+-.....--.+.....+.+..+--.....+..|
T Consensus 455 rraIeQcnemv~rir~l~~sle~qrKVeqe~emlKaen~rqakkiefmkEeiQethldyR~els~l 520 (1265)
T KOG0976|consen 455 RRAIEQCNEMVDRIRALMDSLEKQRKVEQEYEMLKAENERQAKKIEFMKEEIQETHLDYRSELSEL 520 (1265)
T ss_pred hhHHHHHHHHHHHHHHHhhChhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555544444444433 45555555544433333333344444444444444444444
No 152
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=29.92 E-value=5.3e+02 Score=25.09 Aligned_cols=74 Identities=15% Similarity=0.159 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 003495 451 EAASIYENLQTTLSTQQGEMAIFAREMRQRFQVTIERTKDIAEYTNGFLQKLLEESKSLENYAVQADENQMKSIADFQKA 530 (815)
Q Consensus 451 ~~~~~~~~l~~~l~~q~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~~ff~~l~~~a~~l~~~~~~~~~~~~~~l~~~~~~ 530 (815)
....-++-|...+..|+..+..+.++++.+-..-+++.+... .|+...+.- ..+
T Consensus 68 ~~~~fl~~L~~~i~~q~~~v~~~~~~ve~~r~~~~ea~~~~k---------------~~ekLker~-----------~~~ 121 (146)
T PRK07720 68 HYQQFVTNLERTIDHYQLLVMQAREQMNRKQQDLTEKNIEVK---------------KYEKMKEKK-----------QEM 121 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHH-----------HHH
Confidence 345557778888899999999999999988888777777544 344444333 345
Q ss_pred HHHhcHHHHHHHHHHHHHHH
Q 003495 531 YEDQTKSDTEKLIADVTSLV 550 (815)
Q Consensus 531 ~~~~~~~e~~~l~~~i~~l~ 550 (815)
|.......++++|+.++...
T Consensus 122 ~~~~e~r~EQk~~DE~a~~~ 141 (146)
T PRK07720 122 FALEEKAAEMKEMDEISIQQ 141 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67777888899999888644
No 153
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=29.69 E-value=1.4e+03 Score=29.91 Aligned_cols=44 Identities=14% Similarity=0.240 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 003495 370 NEHLKHVEKLCHSLLGIHEKAVIDLKKKVTASRALYCSHMEAVQ 413 (815)
Q Consensus 370 ~~~l~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~l~ 413 (815)
......++..|..+.......+.+|.+.+...+......-..++
T Consensus 768 ~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~e 811 (1174)
T KOG0933|consen 768 EDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELE 811 (1174)
T ss_pred HHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777777777777778888877777665554443333
No 154
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=29.53 E-value=7.5e+02 Score=26.75 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHhcHHHHHHHHHH
Q 003495 522 KSIADFQKAYEDQTKSDTEKLIAD 545 (815)
Q Consensus 522 ~~l~~~~~~~~~~~~~e~~~l~~~ 545 (815)
..+.+.+..|.++++..-..|+..
T Consensus 218 ~~fv~AQl~Yh~~~~e~L~~l~~~ 241 (242)
T cd07600 218 KELVKAQLAYHKTAAELLEELLSV 241 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445666778888888877777653
No 155
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=28.80 E-value=1.1e+03 Score=28.57 Aligned_cols=43 Identities=19% Similarity=0.076 Sum_probs=25.6
Q ss_pred hHhHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHhHHHHH
Q 003495 620 CRMELLLQECVNSGESAFGHWKRTYESVNEMESKHVSSMISLT 662 (815)
Q Consensus 620 ~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 662 (815)
.+|+.+|......+...-.-|...-.-|.+=+...+.++..++
T Consensus 327 ~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~Ll 369 (546)
T KOG0977|consen 327 EDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLL 369 (546)
T ss_pred HHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555666666666666666666666555555555555554
No 156
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=28.22 E-value=6.9e+02 Score=25.87 Aligned_cols=105 Identities=17% Similarity=0.131 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHhHHHHHHHHhhchhHHHHHHHHHHH
Q 003495 371 EHLKHVEKLCHSLLGIHEKAVIDLKKKVTASRALYCSHMEAVQNVVRLHKACSNANLEEISAFASSNSESIKEFLASEAR 450 (815)
Q Consensus 371 ~~l~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (815)
..|..+...++..++......+.|..-+.++...+...-++|..-...++. ....++.--+.=.+..-.|=.-+..+..
T Consensus 77 ~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~-ee~~~~~y~~~eh~rll~LWr~v~~lRr 155 (182)
T PF15035_consen 77 EELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWRE-EEENFNQYLSSEHSRLLSLWREVVALRR 155 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhcccccHHHHHHHHHHHHHH
Confidence 445555666666666666666777777777777666655555554444442 2222333222222333345566777888
Q ss_pred HHHHHHHHHHHcHHHhHHHHHHHHHH
Q 003495 451 EAASIYENLQTTLSTQQGEMAIFARE 476 (815)
Q Consensus 451 ~~~~~~~~l~~~l~~q~~~~~~~~~q 476 (815)
.|..+-....+.|..++.++++..+.
T Consensus 156 ~f~elr~~TerdL~~~r~e~~r~~r~ 181 (182)
T PF15035_consen 156 QFAELRTATERDLSDMRAEFARTSRS 181 (182)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 88888888889999999999887653
No 157
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=28.20 E-value=9.5e+02 Score=27.53 Aligned_cols=21 Identities=10% Similarity=0.055 Sum_probs=12.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHH
Q 003495 464 STQQGEMAIFAREMRQRFQVT 484 (815)
Q Consensus 464 ~~q~~~~~~~~~q~~~~~~~~ 484 (815)
-..|+-+..|+.++.++.-|+
T Consensus 331 v~IKqAl~kLk~EI~qMdvrI 351 (359)
T PF10498_consen 331 VKIKQALTKLKQEIKQMDVRI 351 (359)
T ss_pred HHHHHHHHHHHHHHHHhhhhh
Confidence 344666666666766665543
No 158
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=27.84 E-value=53 Score=38.73 Aligned_cols=49 Identities=22% Similarity=0.295 Sum_probs=33.2
Q ss_pred CCCCCCCCCC---cceEEEeeccCCCCCCCCCCCCcHHHHHHHHHHHhhhCCCceEEEEeE
Q 003495 1 MSGRHEKEKG---VNVQLCSMRQSGPNGELPPEAGVIPRAVQQIFDTLESQNAEYSVKVTF 58 (815)
Q Consensus 1 ~~~l~~~~~G---yN~~I~ayGqTGSGkt~t~~~GIIPRal~~LF~~i~~~~~~~sV~vS~ 58 (815)
|+|||..+.| .+.+++..|++|+|||. -+++-+++.+... .+-.+.|||
T Consensus 7 I~gLD~il~GGlp~g~~~Li~G~pGsGKT~--------la~qfl~~g~~~~-ge~~lyvs~ 58 (484)
T TIGR02655 7 IEGFDDISHGGLPIGRSTLVSGTSGTGKTL--------FSIQFLYNGIIHF-DEPGVFVTF 58 (484)
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHH--------HHHHHHHHHHHhC-CCCEEEEEE
Confidence 6889998775 57899999999999982 2455555554321 234455555
No 159
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=27.69 E-value=3.7e+02 Score=23.23 Aligned_cols=18 Identities=17% Similarity=0.431 Sum_probs=7.4
Q ss_pred HHcHHHhHHHHHHHHHHH
Q 003495 460 QTTLSTQQGEMAIFAREM 477 (815)
Q Consensus 460 ~~~l~~q~~~~~~~~~q~ 477 (815)
...|..-+.++..+.+++
T Consensus 60 ~~kl~~yr~~l~~lk~~l 77 (79)
T PF05008_consen 60 KSKLRSYRSELKKLKKEL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333344444444444443
No 160
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=27.61 E-value=7.7e+02 Score=26.23 Aligned_cols=39 Identities=21% Similarity=0.377 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcHHHhHHHHHHHHHHHHHHHHH
Q 003495 441 IKEFLASEAREAASIYENLQTTLSTQQGEMAIFAREMRQRFQV 483 (815)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~l~~~l~~q~~~~~~~~~q~~~~~~~ 483 (815)
+..||.-+..+ +..+..-..+++++++.|.+++...-..
T Consensus 28 VdeFLD~V~~d----ye~~l~e~~~l~~~i~~L~~~l~~~~~~ 66 (212)
T COG3599 28 VDEFLDDVIDD----YEQLLDENEDLEDEIDELKEELKEAADA 66 (212)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44555555555 3333344555666666666666666554
No 161
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=27.60 E-value=1.1e+03 Score=28.25 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=20.5
Q ss_pred CCCCcceEEEeeccCCCCCCCCCCCCcHHHHHHHHH
Q 003495 7 KEKGVNVQLCSMRQSGPNGELPPEAGVIPRAVQQIF 42 (815)
Q Consensus 7 ~~~GyN~~I~ayGqTGSGkt~t~~~GIIPRal~~LF 42 (815)
|..|+| +-.|++|+||| +|..++..+|
T Consensus 20 f~~g~~---vitG~nGaGKS------~ll~al~~~~ 46 (563)
T TIGR00634 20 FERGLT---VLTGETGAGKS------MIIDALSLLG 46 (563)
T ss_pred cCCCeE---EEECCCCCCHH------HHHHHHHHHh
Confidence 445665 46799999996 6778888887
No 162
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=27.58 E-value=8.5e+02 Score=26.73 Aligned_cols=96 Identities=11% Similarity=0.124 Sum_probs=65.3
Q ss_pred HHHHHHHHHhhhhhhhHHHH---HHHHHHhcHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 003495 508 SLENYAVQADENQMKSIADF---QKAYEDQTKSDTEKLIADVTSLVS--SHMRRQTELVEARLVDFRENAVSSKLFLDGH 582 (815)
Q Consensus 508 ~l~~~~~~~~~~~~~~l~~~---~~~~~~~~~~e~~~l~~~i~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 582 (815)
.++..++-.|..-.+.+..+ .+.|+...+.+..+ ..+.+..-+ .....|..-+.+++...+..+.......+..
T Consensus 116 ~~e~~f~KaQKpw~k~~kkv~~aKk~Y~~aCk~e~~A-~~~~~~~~~d~~~~~~q~~K~~~k~~k~~~~~~k~~~~Y~~~ 194 (258)
T cd07679 116 EAEDGFRKAQKPWAKKLKEVEAAKKAYHTACKEEKLA-TSREANSKADPALNPEQLKKLQDKVEKCKQDVLKTKEKYEKS 194 (258)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555444444443 45677666655544 444444333 3345677889999999999999999999999
Q ss_pred hhhhhccchHHHHHHHHHHHHh
Q 003495 583 ASSVEGITTDAKRKWQAFAMQA 604 (815)
Q Consensus 583 ~~~mq~~t~~~~~~~~~~~~~~ 604 (815)
+..+..++..|.+.|..-.++-
T Consensus 195 l~~L~~~~~~y~e~m~~~fe~~ 216 (258)
T cd07679 195 LKELDQTTPQYMENMEQVFEQC 216 (258)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 9999888888888777655443
No 163
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=27.17 E-value=5.2e+02 Score=24.10 Aligned_cols=81 Identities=17% Similarity=0.195 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHhHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcHHHhHHHH
Q 003495 391 VIDLKKKVTASRALYCSHMEAVQNVVRLHKACSNANLEEISAFASSNSESIKEFLASEAREAASIYENLQTTLSTQQGEM 470 (815)
Q Consensus 391 ~~el~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~q~~~~ 470 (815)
..+++.++..+-..|. +.+.+..+........+.+...+...++.|- .+-..+.+|+++.--+..++++.+
T Consensus 18 ~~e~~~~l~~Wa~~~~-----v~~~~~~f~~~~~~~~~~~~~~~~~vi~~L~----~a~~~l~~I~~n~~lT~~q~~~~I 88 (113)
T PF02520_consen 18 KAEIEEQLDEWAEKYG-----VQDQYNEFKAQVQAQKEEVRKNVTAVISNLS----SAFAKLSAILDNKSLTRQQQQEAI 88 (113)
T ss_pred HHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHcCcccCHHHHHHHH
Confidence 3455555555544444 2333333333333333333333333333333 444556677777777788888888
Q ss_pred HHHHHHHHHH
Q 003495 471 AIFAREMRQR 480 (815)
Q Consensus 471 ~~~~~q~~~~ 480 (815)
..|..+.-..
T Consensus 89 ~~l~~~~~~e 98 (113)
T PF02520_consen 89 DALRKQYPEE 98 (113)
T ss_pred HHHHHHCCHH
Confidence 8877776655
No 164
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=27.07 E-value=28 Score=36.16 Aligned_cols=26 Identities=12% Similarity=-0.014 Sum_probs=22.4
Q ss_pred CCCCCCCCCC---cceEEEeeccCCCCCC
Q 003495 1 MSGRHEKEKG---VNVQLCSMRQSGPNGE 26 (815)
Q Consensus 1 ~~~l~~~~~G---yN~~I~ayGqTGSGkt 26 (815)
|++||.++.| ...++.-+|++|+|||
T Consensus 5 ~~~lD~~l~GGi~~g~i~~i~G~~GsGKT 33 (235)
T cd01123 5 SKALDELLGGGIETGSITEIFGEFGSGKT 33 (235)
T ss_pred chhhHhhccCCCCCCeEEEEECCCCCCHH
Confidence 5678888886 6788899999999998
No 165
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=26.89 E-value=7.9e+02 Score=26.14 Aligned_cols=78 Identities=14% Similarity=0.197 Sum_probs=52.8
Q ss_pred HHHHHHHHHcHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 003495 453 ASIYENLQTTLSTQQGEMAIFAREMR---QRFQVTIERTKDIAEYTNGFLQKLLEESKSLENYAVQADENQMKSIADFQK 529 (815)
Q Consensus 453 ~~~~~~l~~~l~~q~~~~~~~~~q~~---~~~~~~~~~~~~~s~~~~~ff~~l~~~a~~l~~~~~~~~~~~~~~l~~~~~ 529 (815)
+.+|++-.+....|+.+-..|..++. +|......+...+++++.+||+.+-.-.+-+..+.+.. +.-..++..
T Consensus 11 D~~Fe~~e~rf~~le~~~~kL~Ke~K~Y~~av~~M~~~q~~~se~l~e~Y~~~~~~~~~~~~v~e~~----d~~~~~~~~ 86 (211)
T cd07612 11 DEQFEQCAMNLNMQQSDGNRLYKDLKAYLNAVKVMHESSKRLSQTLQDIYEPDWDGHEDLGAIVEGE----DLLWNDYEA 86 (211)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCcccHHHHHHhcc----HHHHHHHHH
Confidence 56788888999999998888888877 34445666667777777788877766666666444332 334445555
Q ss_pred HHHHh
Q 003495 530 AYEDQ 534 (815)
Q Consensus 530 ~~~~~ 534 (815)
.+.+.
T Consensus 87 ~~~~~ 91 (211)
T cd07612 87 KLHDQ 91 (211)
T ss_pred HHHHH
Confidence 55554
No 166
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=26.80 E-value=7.1e+02 Score=25.56 Aligned_cols=34 Identities=15% Similarity=0.392 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHcHHHhHHHHHHHHHHHHHH
Q 003495 447 SEAREAASIYENLQTTLSTQQGEMAIFAREMRQR 480 (815)
Q Consensus 447 ~~~~~~~~~~~~l~~~l~~q~~~~~~~~~q~~~~ 480 (815)
.=...|++..+.+...|....+.+..|+.++..-
T Consensus 142 ~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~ 175 (184)
T PF05791_consen 142 KDSRNLKTDVDELQSILAGENGDIPQLQKQIENL 175 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 3334455556677777777777777777766543
No 167
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=26.58 E-value=8.3e+02 Score=26.31 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHcHHHhHHHHHHHHH
Q 003495 439 ESIKEFLASEAREAASIYENLQTTLSTQQGEMAIFAR 475 (815)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~l~~~l~~q~~~~~~~~~ 475 (815)
...+.++......++...+.+...+..|...+..+..
T Consensus 189 ~~~~~lf~~eL~k~~~~~~~i~~~~~~Q~~ll~~i~~ 225 (296)
T PF13949_consen 189 ADFEALFEEELKKFDPLQNRIQQNLSKQEELLQEIQE 225 (296)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777777777777777777666655443
No 168
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=25.87 E-value=34 Score=40.78 Aligned_cols=54 Identities=9% Similarity=0.241 Sum_probs=33.6
Q ss_pred EEEeeccCCCCCCCC--------CCCCcHH----HHHHHHHHHhhh--CCCceEEEEeEEEEEccccc
Q 003495 14 QLCSMRQSGPNGELP--------PEAGVIP----RAVQQIFDTLES--QNAEYSVKVTFLELYNEEIT 67 (815)
Q Consensus 14 ~I~ayGqTGSGkt~t--------~~~GIIP----Ral~~LF~~i~~--~~~~~sV~vS~lEIYnE~V~ 67 (815)
.-.-.|.|||||||| .-|-+|- -...+||..+.. .+..+...|||+..|.-+-|
T Consensus 34 ~QtLLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk~fFP~NaVEYFVSYYDYYQPEAY 101 (663)
T COG0556 34 HQTLLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAY 101 (663)
T ss_pred eeEEeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHHHHhCcCcceEEEeeeccccCcccc
Confidence 445679999999997 1122211 123456666543 34455668899999977643
No 169
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=24.88 E-value=1.4e+03 Score=28.19 Aligned_cols=60 Identities=15% Similarity=0.243 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 003495 484 TIERTKDIAEYTNGFLQKLLEESKSLENYAVQADENQMKSIADFQKAYEDQTKSDTEKLIADVTSLVS 551 (815)
Q Consensus 484 ~~~~~~~~s~~~~~ff~~l~~~a~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~l~~~i~~l~~ 551 (815)
.++..-.+-+.++.+..+=.+...+|+.+++.+ .+++.+|..+++.. |.-|++.+..|-.
T Consensus 374 ~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s----~~rl~~L~~qWe~~----R~pL~~e~r~lk~ 433 (594)
T PF05667_consen 374 ELEEELKLKKKTVELLPDAEENIAKLQALVEAS----EQRLVELAQQWEKH----RAPLIEEYRRLKE 433 (594)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH----HHHHHHHHHHHHHH----HhHHHHHHHHHHH
Confidence 344555566666666666666777777777664 45666666666543 3355555555443
No 170
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=24.47 E-value=9.9e+02 Score=29.58 Aligned_cols=52 Identities=15% Similarity=0.309 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 003495 496 NGFLQKLLEESKSLENYAVQADENQMKSIADFQKAYEDQTKSDTEKLIADVTSLVS 551 (815)
Q Consensus 496 ~~ff~~l~~~a~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~l~~~i~~l~~ 551 (815)
.+-...+......|+.-+.+ ...++..++..|.+-+.....-+++++.-||.
T Consensus 377 ~~~~~~~~~~l~~le~~l~~----~~~~~~~L~~~~~~l~~~r~dW~laEae~Ll~ 428 (656)
T PRK06975 377 QASVHQLDSQFAQLDGKLAD----AQSAQQALEQQYQDLSRNRDDWMIAEVEQMLS 428 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcChhhhHHHHHHHHHH
Confidence 33444445555555554444 45677777888877777777888888877775
No 171
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=24.44 E-value=91 Score=35.60 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=26.0
Q ss_pred EEeeccCCCCCCCCCCCCcHHHHHHHHHHHhhhCCCce-EEEEeEEEE
Q 003495 15 LCSMRQSGPNGELPPEAGVIPRAVQQIFDTLESQNAEY-SVKVTFLEL 61 (815)
Q Consensus 15 I~ayGqTGSGkt~t~~~GIIPRal~~LF~~i~~~~~~~-sV~vS~lEI 61 (815)
++.||++|+||| -++..+++.++.....+ .++|-+.++
T Consensus 45 ~~iyG~~GTGKT---------~~~~~v~~~l~~~~~~~~~~yINc~~~ 83 (366)
T COG1474 45 IIIYGPTGTGKT---------ATVKFVMEELEESSANVEVVYINCLEL 83 (366)
T ss_pred EEEECCCCCCHh---------HHHHHHHHHHHhhhccCceEEEeeeeC
Confidence 899999999998 35667777776543333 456655554
No 172
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=24.42 E-value=8.9e+02 Score=25.87 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=7.8
Q ss_pred HHHHHcHHHhHHHHHHHHHH
Q 003495 457 ENLQTTLSTQQGEMAIFARE 476 (815)
Q Consensus 457 ~~l~~~l~~q~~~~~~~~~q 476 (815)
.++...+...+..+..+..+
T Consensus 122 ~~~~~~~~~~~~~l~~l~~~ 141 (302)
T PF10186_consen 122 EELQNELEERKQRLSQLQSQ 141 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444333333
No 173
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=24.20 E-value=1.6e+03 Score=28.86 Aligned_cols=43 Identities=19% Similarity=0.152 Sum_probs=25.3
Q ss_pred hhhhcchHHHHHHHHHHHHhhhcccCCcCCCCcccccCCCCcchhhhccCCchHHH
Q 003495 728 ESHSAQSASIKEKAQETFQQRYMDYEHTGTTPTRCESEVPSKGTIESLRAMPMETL 783 (815)
Q Consensus 728 ~~~~~~~~~i~~~~~~~~~~eY~~~~ptg~TP~k~~~~~ps~~sIe~~rt~~~e~l 783 (815)
.-+..+++.|...+.+.- -+++|.|.+.+- +|-..+|.-++.+
T Consensus 758 aAI~~A~~rie~~~~Kar---------~ss~~~~LeVne----~iL~~ct~lm~aI 800 (980)
T KOG0980|consen 758 AAIEDAVSRIEAIAAKAR---------ESSSGVRLEVNE----SILSACTALMEAI 800 (980)
T ss_pred HHHHHHHHHHHHHHHHhh---------hcCCCceeeccH----HHHHHHHHHHHHH
Confidence 444555666666555332 255676666553 4555888887765
No 174
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=24.13 E-value=9e+02 Score=25.83 Aligned_cols=26 Identities=8% Similarity=0.143 Sum_probs=11.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003495 381 HSLLGIHEKAVIDLKKKVTASRALYC 406 (815)
Q Consensus 381 ~~~~~~~~~~~~el~~~~~~~~~~~~ 406 (815)
..++......+.+|+.++........
T Consensus 76 ~~~v~~q~~el~~L~~qi~~~~~~~~ 101 (251)
T PF11932_consen 76 ERQVASQEQELASLEQQIEQIEETRQ 101 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443333
No 175
>PRK11281 hypothetical protein; Provisional
Probab=23.98 E-value=1.8e+03 Score=29.33 Aligned_cols=14 Identities=43% Similarity=0.472 Sum_probs=7.4
Q ss_pred CChHhHHHHHHHHH
Q 003495 245 HCLEETLSTLDYAH 258 (815)
Q Consensus 245 ~~~eETlsTL~fA~ 258 (815)
.++++|+..|+=+.
T Consensus 63 ~~l~~tL~~L~qi~ 76 (1113)
T PRK11281 63 QDLEQTLALLDKID 76 (1113)
T ss_pred HHHHHHHHHHHHHH
Confidence 34566666554433
No 176
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=23.65 E-value=1.2e+03 Score=27.31 Aligned_cols=38 Identities=21% Similarity=0.263 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHcHHHhHHHHHHHHHHHHHHHH
Q 003495 445 LASEAREAASIYENLQTTLSTQQGEMAIFAREMRQRFQ 482 (815)
Q Consensus 445 ~~~~~~~~~~~~~~l~~~l~~q~~~~~~~~~q~~~~~~ 482 (815)
+..+.-++--+|++++++|+.++.+.-..+|..+..-.
T Consensus 324 ~~~~e~~~lk~~e~~~kqL~~~~kek~~~~Qd~~~r~~ 361 (446)
T KOG4438|consen 324 LNQLELEKLKMFENLTKQLNELKKEKESRRQDLENRKT 361 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 33444455556899999999999887777776665443
No 177
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=23.65 E-value=7.9e+02 Score=25.01 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhH
Q 003495 367 CQQNEHLKHVEKLCHSLLGIH 387 (815)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~~~ 387 (815)
.++.+++..+...+..|....
T Consensus 20 ~~~~~~l~~l~~ai~~~~~~~ 40 (204)
T PF04740_consen 20 KELKEQLESLQKAINQFISSE 40 (204)
T ss_pred HHHHHHHHHHHHHHHHHHcCc
Confidence 344455666666666666543
No 178
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=23.64 E-value=1.2e+03 Score=27.53 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=19.4
Q ss_pred CcCCchhhhhhccCCCCcccce
Q 003495 215 YRDSKLTRLLRDSLGGRTKTCI 236 (815)
Q Consensus 215 YRdSKLTrLLqdsLGGnskT~~ 236 (815)
-|+-+|||=+..-+||+.+|.|
T Consensus 343 KrEVPltre~~~e~~~rprts~ 364 (583)
T KOG3809|consen 343 KREVPLTREMTGEGGGRPRTSM 364 (583)
T ss_pred cccCCCCccCcccccCCcccCC
Confidence 5667899999999999999987
No 179
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.59 E-value=1.4e+03 Score=27.88 Aligned_cols=13 Identities=23% Similarity=0.220 Sum_probs=6.7
Q ss_pred CCCcceEEEeecc
Q 003495 8 EKGVNVQLCSMRQ 20 (815)
Q Consensus 8 ~~GyN~~I~ayGq 20 (815)
|+|-+.|++...-
T Consensus 66 Wd~~ds~Llv~~l 78 (741)
T KOG4460|consen 66 WDGEDSSLLVVRL 78 (741)
T ss_pred EecCcceEEEEEe
Confidence 4555555555443
No 180
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=23.15 E-value=1.8e+03 Score=28.99 Aligned_cols=145 Identities=10% Similarity=0.122 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHhhhhhhhhhhh
Q 003495 505 ESKSLENYAVQADENQMKSIADFQKAYEDQTKSDTEKLIADVTSLVSSHMRRQ--TELVEARLVDFRENAVSSKLFLDGH 582 (815)
Q Consensus 505 ~a~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~l~~~i~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~ 582 (815)
..+.=.++|++....-.+++.+++..|+. ...|.++|+..+.. +..+.++| ..=..+++..+.+-..+...-+...
T Consensus 412 nLs~k~e~Leeri~ql~qq~~eled~~K~-L~~E~ekl~~e~~t-~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~ 489 (1195)
T KOG4643|consen 412 NLSKKHEILEERINQLLQQLAELEDLEKK-LQFELEKLLEETST-VTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQ 489 (1195)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444567777766667777777777664 45667777766654 34444455 2223333433333333333333333
Q ss_pred hhhhhccchHHHHHHHHHHHHhhhhhhhchhhhhhhHhHhHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHhHHHHH
Q 003495 583 ASSVEGITTDAKRKWQAFAMQADNDAKDGADHSSAKHCRMELLLQECVNSGESAFGHWKRTYESVNEMESKHVSSMISLT 662 (815)
Q Consensus 583 ~~~mq~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 662 (815)
+.+. +.-++ .-..+.....+.++.+.++++.|......-. .+...|...+
T Consensus 490 iknl-------nk~L~--------~r~~elsrl~a~~~elkeQ~kt~~~qye~~~---------------~k~eeLe~~l 539 (1195)
T KOG4643|consen 490 IKNL-------NKSLN--------NRDLELSRLHALKNELKEQYKTCDIQYELLS---------------NKLEELEELL 539 (1195)
T ss_pred HHHH-------HHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHH
Confidence 3331 11111 2222333455566777777787766554444 3444555555
Q ss_pred HHHhhhhhHHHHHHHHHHH
Q 003495 663 RNASYSNEQHDVEVDTARV 681 (815)
Q Consensus 663 ~~~~~~n~~~~~~~~~~~~ 681 (815)
..--+.|+.+...+.....
T Consensus 540 ~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 540 GNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 5555566666665554433
No 181
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=22.96 E-value=1.7e+03 Score=28.58 Aligned_cols=16 Identities=6% Similarity=-0.014 Sum_probs=12.3
Q ss_pred cceEEEeeccCCCCCC
Q 003495 11 VNVQLCSMRQSGPNGE 26 (815)
Q Consensus 11 yN~~I~ayGqTGSGkt 26 (815)
.+...+-+|++|+|||
T Consensus 24 ~~gi~lI~G~nGsGKS 39 (908)
T COG0419 24 DSGIFLIVGPNGAGKS 39 (908)
T ss_pred CCCeEEEECCCCCcHH
Confidence 3445567899999998
No 182
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=22.50 E-value=1.5e+03 Score=27.81 Aligned_cols=13 Identities=8% Similarity=-0.036 Sum_probs=10.7
Q ss_pred EEEeeccCCCCCC
Q 003495 14 QLCSMRQSGPNGE 26 (815)
Q Consensus 14 ~I~ayGqTGSGkt 26 (815)
+++-+|+.|+|||
T Consensus 30 ~~~i~G~Ng~GKt 42 (650)
T TIGR03185 30 IILIGGLNGAGKT 42 (650)
T ss_pred EEEEECCCCCCHH
Confidence 5567899999997
No 183
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=22.40 E-value=8.3e+02 Score=24.84 Aligned_cols=67 Identities=13% Similarity=0.122 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHHHhhchhHHHHHHHHHHHHH-----HHHHH-HHHHcHHHhHHHHHHHHHHH
Q 003495 411 AVQNVVRLHKACSNANLEEISAFASSNSESIKEFLASEAREA-----ASIYE-NLQTTLSTQQGEMAIFAREM 477 (815)
Q Consensus 411 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~l~~~l~~q~~~~~~~~~q~ 477 (815)
.+++....+.......+..+..........+..++..+..+. .+.++ ++.+.++..++.+..+...+
T Consensus 50 siK~y~~~vh~pll~~~~~~~~~~~~~l~~~~~~~~~vd~~~~a~i~e~~L~~el~~~l~~~~~~~~~~~~~~ 122 (204)
T PF04740_consen 50 SIKNYFSEVHIPLLQGLILLLEEYQEALKFIKDFQSEVDSSSNAIIDEDFLESELKKKLNQLKEQIEDLQDEI 122 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455554444444444444444444444444444443222 23344 55555555555554444443
No 184
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=22.34 E-value=1.1e+03 Score=26.34 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=13.2
Q ss_pred cHHHHHHHHHHHHHHHHHH
Q 003495 295 NLDQTIKLLNNTEEQLKKC 313 (815)
Q Consensus 295 ~l~~~~~~l~~~~~~l~~~ 313 (815)
.+..++..|.+++++++++
T Consensus 78 s~r~lk~~l~evEekyrkA 96 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKA 96 (302)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 3455677778888887764
No 185
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=22.00 E-value=1.1e+03 Score=26.31 Aligned_cols=119 Identities=9% Similarity=-0.003 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHhHHHHHHHHhhchhHHHHHHHHHHH
Q 003495 371 EHLKHVEKLCHSLLGIHEKAVIDLKKKVTASRALYCSHMEAVQNVVRLHKACSNANLEEISAFASSNSESIKEFLASEAR 450 (815)
Q Consensus 371 ~~l~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (815)
+.++.+...+..-++....-...|.+.+..+...+....+....+..++.. +......+...-.+.-.-+..-..
T Consensus 140 kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~-----L~~~~~e~~~~d~~eL~~lk~~l~ 214 (312)
T smart00787 140 KLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQ-----LKQLEDELEDCDPTELDRAKEKLK 214 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhHHHHHhCCHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003495 451 EAASIYENLQTTLSTQQGEMAIFAREMRQRFQVTIERTKDIAEY 494 (815)
Q Consensus 451 ~~~~~~~~l~~~l~~q~~~~~~~~~q~~~~~~~~~~~~~~~s~~ 494 (815)
..+.-+....+.+.+.+.++..+...+++......+....|+++
T Consensus 215 ~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~a 258 (312)
T smart00787 215 KLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEA 258 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 186
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=21.96 E-value=1.1e+03 Score=26.29 Aligned_cols=133 Identities=11% Similarity=0.065 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 003495 282 KERYYQEESERKSNLDQTIKLLNNTEEQLKKCQYALKEKDFIISEQKKAGREDKLNADNRSVVENFQVELAQQIGSLCDI 361 (815)
Q Consensus 282 ~~~~~~e~~e~k~~l~~~~~~l~~~~~~l~~~~~~l~e~e~~i~~~~~~~~~~~l~~~n~~~~~~~~~~l~~~~~~l~~~ 361 (815)
...|..+.......+..+..++..++.++...+..+...+..+.....--.+..+..........--..+...+...+..
T Consensus 139 ~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~~g~is~~~~~~~~~~~~~~~~~l~~~~~~ 218 (423)
T TIGR01843 139 KSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERERAEAQGELGRLEAE 218 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHH
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 003495 362 VDLSTCQQNEHLKHVEKLCHSLLGIHEKAVIDLKKKVTASRALYCSHMEAVQN 414 (815)
Q Consensus 362 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~l~~ 414 (815)
+.....+.+..-..+......+.........+++.++..++..+......+..
T Consensus 219 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~ 271 (423)
T TIGR01843 219 LEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQR 271 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 187
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=21.94 E-value=1.4e+03 Score=27.12 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhHH
Q 003495 671 QHDVEVDTARVATEEEVAKSSEDALQLIASASE 703 (815)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 703 (815)
.+|.++..++ .+.+.+...|.+|++.+-....
T Consensus 309 eL~~Eleeal-~Lae~s~qQY~~lLq~~Q~hm~ 340 (436)
T PF01093_consen 309 ELHEELEEAL-RLAEKSTQQYDQLLQMVQHHME 340 (436)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445544433 4666777778888866654444
No 188
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=21.85 E-value=2e+03 Score=29.11 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 003495 540 EKLIADVTSLVSSHMRRQTELVEARLVDFRENAVSSKLFLDGH 582 (815)
Q Consensus 540 ~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 582 (815)
..|=+.|+.|-+...+.+..+....- +|....+.......+
T Consensus 626 ~~l~~~i~sL~~~~~~~~~~l~k~~e--l~r~~~e~~~~~ek~ 666 (1317)
T KOG0612|consen 626 AELKEEISSLEETLKAGKKELLKVEE--LKRENQERISDSEKE 666 (1317)
T ss_pred HHHHhHHHHHHHHHHhhhhHHHHHHH--HHHHHHHHHHHHHHH
Confidence 33444555555555555544443322 555444444444443
No 189
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=21.74 E-value=1.2e+03 Score=26.29 Aligned_cols=149 Identities=14% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 003495 291 ERKSNLDQTIKLLNNTEEQLKKCQYALKEKDFIISEQKKAGREDKLNADNRSVVENFQVELAQQIGSLCDIVDLSTCQQN 370 (815)
Q Consensus 291 e~k~~l~~~~~~l~~~~~~l~~~~~~l~e~e~~i~~~~~~~~~~~l~~~n~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~ 370 (815)
.....|..+...+..++.+.......|+++..-|....-+..+..-.. ..-.-|..+|.+.-+.+.+.|......|.
T Consensus 188 ~~v~~Lr~~l~~l~~lk~eR~~~~~~Lk~~~dDI~~~ll~~~~~~~~~---~~e~l~~~eL~k~f~~~~~~i~~~~~~Q~ 264 (339)
T cd09235 188 EAVQELRQLMEQVETIKAEREVIESELKSATFDMKSKFLSALAQDGAI---NEEAISVEELDRVYGPLQKQVQESLSRQE 264 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHhcCCc---cHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHhHHHHHHHHhhchhHHHHHHHHH
Q 003495 371 EHLKHVEKLCHSLLGIHEKAVI--DLKKKVTASRALYCSHMEAVQNVVRLHKACSNANLEEISAFASSNSESIKEFLASE 448 (815)
Q Consensus 371 ~~l~~~~~~~~~~~~~~~~~~~--el~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (815)
..++.+......|......... ..+..+..+...|....+-..++-+-.+ ||..|
T Consensus 265 ~ll~~i~~~n~~f~~~~~~~~~~~~re~~lq~L~~Ay~~y~el~~nl~eG~k-----------------------FY~dL 321 (339)
T cd09235 265 SLLANIQVAHQEFSKEKQSNSGANEREEVLKDLAAAYDAFMELTANLKEGTK-----------------------FYNDL 321 (339)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----------------------HHHHH
Q ss_pred HHHHHHHHHHHHHcHHH
Q 003495 449 AREAASIYENLQTTLST 465 (815)
Q Consensus 449 ~~~~~~~~~~l~~~l~~ 465 (815)
..-+..+.+++..-.++
T Consensus 322 ~~~~~~~~~~~~~fv~~ 338 (339)
T cd09235 322 TEILVKFQNKCSDFVFA 338 (339)
T ss_pred HHHHHHHHHHHHHHHhc
No 190
>PRK06620 hypothetical protein; Validated
Probab=21.42 E-value=33 Score=35.92 Aligned_cols=15 Identities=13% Similarity=0.011 Sum_probs=13.1
Q ss_pred eEEEeeccCCCCCCC
Q 003495 13 VQLCSMRQSGPNGEL 27 (815)
Q Consensus 13 ~~I~ayGqTGSGkt~ 27 (815)
-.++-||++|+|||+
T Consensus 45 ~~l~l~Gp~G~GKTh 59 (214)
T PRK06620 45 FTLLIKGPSSSGKTY 59 (214)
T ss_pred ceEEEECCCCCCHHH
Confidence 358999999999994
No 191
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=21.34 E-value=9.9e+02 Score=25.30 Aligned_cols=67 Identities=10% Similarity=0.164 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHhHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcHHHhHH
Q 003495 392 IDLKKKVTASRALYCSHMEAVQNVVRLHKACSNANLEEISAFASSNSESIKEFLASEAREAASIYENLQTTLSTQQG 468 (815)
Q Consensus 392 ~el~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~q~~ 468 (815)
.+|-+.+......|.-++..+++.+--|+.+ .+++-+++|+.-+.++..|..+++.++.+++.+--.
T Consensus 129 ~~L~~aM~~Ae~km~PVL~~~~D~vL~LKHN----------LNA~AI~sL~~e~~~~~~di~~Li~~m~~sI~ead~ 195 (201)
T PF11172_consen 129 AQLIKAMRRAESKMQPVLAAFRDQVLYLKHN----------LNAQAIASLQGEFSSIESDISQLIKEMERSIAEADA 195 (201)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHhcc----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444432 245667889999999999999999998888876544
No 192
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=20.91 E-value=9.7e+02 Score=25.03 Aligned_cols=40 Identities=10% Similarity=0.077 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhccchHHHHHHHHHHH
Q 003495 563 ARLVDFRENAVSSKLFLDGHASSVEGITTDAKRKWQAFAM 602 (815)
Q Consensus 563 ~~~~~~~~~~~~~~~~l~~~~~~mq~~t~~~~~~~~~~~~ 602 (815)
+++..+...+..-....+.+-...+.++...+.++..|-.
T Consensus 143 ~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~ 182 (216)
T cd07627 143 EKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFER 182 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666777777778888888754
No 193
>PF11727 ISG65-75: Invariant surface glycoprotein; InterPro: IPR021057 This family is found in Trypanosome species, and appears to be one of two invariant surface glycoproteins, ISG65 and ISG75, that are found in the mammalian stage of the parasitic protozoan. The sequence suggests the two families are polypeptides with N-terminal signal sequences, hydrophilic extracellular domains, single trans-membrane alpha-helices and short cytoplasmic domains. They are both expressed in the bloodstream form but not in the midgut stage. Both polypeptides are distributed over the entire surface of the parasite [, ].
Probab=20.88 E-value=1.1e+03 Score=25.79 Aligned_cols=49 Identities=14% Similarity=0.138 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003495 443 EFLASEAREAASIYENLQTTLSTQQGEMAIFAREMRQRFQVTIERTKDI 491 (815)
Q Consensus 443 ~~~~~~~~~~~~~~~~l~~~l~~q~~~~~~~~~q~~~~~~~~~~~~~~~ 491 (815)
.+..+-...++.++++.++.+.+|-..+....+..++....+..++..+
T Consensus 92 ~l~~~~~~kl~~~~~~a~~~~~~~~~~a~~~~~~~~~~~~~ak~aa~~A 140 (286)
T PF11727_consen 92 KLTDSDVKKLKEICEEAKKKNTEQLEEAKKAMEEAEETHEEAKEAAAKA 140 (286)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344667778888999999999998889999999999988888888866
No 194
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.74 E-value=1.1e+03 Score=25.59 Aligned_cols=37 Identities=14% Similarity=0.283 Sum_probs=23.1
Q ss_pred hhccchHHHHHHHHHHHHhhhhhhhchhhhhhhHhHh
Q 003495 586 VEGITTDAKRKWQAFAMQADNDAKDGADHSSAKHCRM 622 (815)
Q Consensus 586 mq~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (815)
|++.+...+.+|+.|-..--.+|......-++..-.+
T Consensus 193 ve~a~~~~k~e~~Rf~~~k~~D~k~~~~~yae~~i~~ 229 (243)
T cd07666 193 VECANNALKADWERWKQNMQTDLRSAFTDMAENNISY 229 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566889999998877666666555444433333
No 195
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=20.71 E-value=2.2e+03 Score=29.04 Aligned_cols=30 Identities=27% Similarity=0.275 Sum_probs=17.0
Q ss_pred HHHhhhhhhhhhhhhhhhhccchHHHHHHH
Q 003495 569 RENAVSSKLFLDGHASSVEGITTDAKRKWQ 598 (815)
Q Consensus 569 ~~~~~~~~~~l~~~~~~mq~~t~~~~~~~~ 598 (815)
++.+......+-+.+..++.--..+++++.
T Consensus 1050 ~~~l~se~~~~lg~~ke~e~~i~~~k~eL~ 1079 (1294)
T KOG0962|consen 1050 REKLSSEKNLLLGEMKQYESQIKKLKQELR 1079 (1294)
T ss_pred HHHhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 334445555666666665555555666665
No 196
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=20.32 E-value=1.3e+03 Score=26.79 Aligned_cols=85 Identities=15% Similarity=0.239 Sum_probs=50.7
Q ss_pred HHcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcHHHH
Q 003495 460 QTTLSTQQGEMAIFAREMRQRFQVTIERTKDIAEYTNGFLQKLLEESKSLENYAVQADENQMKSIADFQKAYEDQTKSDT 539 (815)
Q Consensus 460 ~~~l~~q~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~~ff~~l~~~a~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~ 539 (815)
+.+-..+.+++..+++|.. + ..-++...+...+.-+.+.....+|.. ++...+...++|.++++++...+..++
T Consensus 55 QqQ~~~~~~~l~a~~~q~~-~----~~~aqe~q~l~~ql~~~~~~~q~el~~-l~~~~~~~~~ql~e~Q~~v~~is~~~~ 128 (391)
T COG2959 55 QQQNVLQTQELQALQQQLK-A----LQLAQENQKLLAQLESLIAQQQAELDR-LERQLETLQKQLSELQKKVATISGSDR 128 (391)
T ss_pred HHHHHHHHHHHHHHHHHHH-H----hhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHhccCCh
Confidence 3344445556666666655 1 112222222223344445555566666 777778899999999999999997755
Q ss_pred HH-HHHHHHHHH
Q 003495 540 EK-LIADVTSLV 550 (815)
Q Consensus 540 ~~-l~~~i~~l~ 550 (815)
+. |++++--||
T Consensus 129 ~dWllaEad~Ll 140 (391)
T COG2959 129 KDWLLAEADFLL 140 (391)
T ss_pred hhHHHHHHHHHH
Confidence 44 555554444
No 197
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=20.18 E-value=6.8e+02 Score=25.76 Aligned_cols=30 Identities=30% Similarity=0.264 Sum_probs=15.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003495 295 NLDQTIKLLNNTEEQLKKCQYALKEKDFII 324 (815)
Q Consensus 295 ~l~~~~~~l~~~~~~l~~~~~~l~e~e~~i 324 (815)
.+..+...+..++.+++.....++++...+
T Consensus 117 ~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~ 146 (194)
T PF08614_consen 117 RLAELEAELAQLEEKIKDLEEELKEKNKAN 146 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555554443
No 198
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=20.08 E-value=6.3e+02 Score=28.08 Aligned_cols=57 Identities=9% Similarity=0.005 Sum_probs=34.7
Q ss_pred hhhchhhhhhhHhHhHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHhHHHHHHHHhhhhh
Q 003495 608 AKDGADHSSAKHCRMELLLQECVNSGESAFGHWKRTYESVNEMESKHVSSMISLTRNASYSNE 670 (815)
Q Consensus 608 ~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~n~ 670 (815)
|.+-.......=.+|+=++|+...-+++-.++-..+.=+ ..+.++-..+.+.|+|-.
T Consensus 232 f~~~L~~~~~vGrkLDFL~QEmnRE~NTigSKs~d~~is------~~vVe~K~eiEkiREQVQ 288 (291)
T TIGR00255 232 FYNILKKGEAVGRKLDFMMQELNRESNTLASKAIDADIT------NLAVEMKVLIEKIKEQIQ 288 (291)
T ss_pred HHHHHhcCCCcCcchhHHHHHHhHHHHHHHHccCcHHHH------HHHHHHHHHHHHHHHHHh
Confidence 333333334445678888999888887777666555433 344556666666666543
Done!