Query 003495
Match_columns 815
No_of_seqs 319 out of 1679
Neff 5.8
Searched_HMMs 29240
Date Tue Mar 26 18:04:49 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003495.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1544-1548//hhsearch_pdb/003495hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x88_A Kinesin-like protein KI 1.0 1 1 574.2 14.9 260 4-271 81-358 (359)
2 2owm_A Nckin3-434, related to 1.0 1 1 572.1 18.9 260 4-271 129-421 (443)
3 2wbe_C Bipolar kinesin KRP-130 1.0 1 1 570.1 13.7 259 4-272 93-370 (373)
4 3b6u_A Kinesin-like protein KI 1.0 1 1 568.6 14.4 259 4-272 94-362 (372)
5 3bfn_A Kinesin-like protein KI 1.0 1 1 567.2 18.0 259 4-275 91-359 (388)
6 3cob_A Kinesin heavy chain-lik 1.0 1 1 564.4 19.0 258 4-272 72-336 (369)
7 2vvg_A Kinesin-2; motor protei 1.0 1 1 563.9 18.7 256 4-272 82-344 (350)
8 2zfi_A Kinesin-like protein KI 1.0 1 1 563.4 18.7 258 4-271 82-362 (366)
9 2y65_A Kinesin, kinesin heavy 1.0 1 1 559.5 18.1 255 4-272 77-342 (365)
10 1t5c_A CENP-E protein, centrom 1.0 1 1 558.4 19.0 259 4-273 70-338 (349)
No 1
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=1.00 E-value=1 Score=574.17 Aligned_cols=260 Identities=60% Similarity=0.880 Sum_probs=243.7
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCCC----------------CCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCC
Q ss_conf 88778986457883125799999999----------------99928999999999954179806999968887725201
Q 003495 4 RHEKEKGVNVQLCSMRQSGPNGELPP----------------EAGVIPRAVQQIFDTLESQNAEYSVKVTFLELYNEEIT 67 (815)
Q Consensus 4 l~~~~~G~N~tIlaYGqTGSGKt~t~----------------~~GIIPRal~~LF~~i~~~~~~~sV~vS~lEIYnE~V~ 67 (815)
+..+++|||+|||+|||||||||||. .+|||||++++||+.+...+.+|.|+|||+|||||+|+
T Consensus 81 v~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~v~vS~~EIYnE~i~ 160 (359)
T 1x88_A 81 LDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELF 160 (359)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSSSSEEEEEEEEEEEEETTEEE
T ss_pred HHHHHCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCEEE
T ss_conf 89873798248998478999875688566776654444456668703899999998774158259999999999576100
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCEEECC--CCCEEECCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 257986102455532105864426559--997685373789906977999986853201330101245788987028999
Q 003495 68 DLLAPDEISRAAVEDKQKKQLPLMEDG--KGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSI 145 (815)
Q Consensus 68 DLL~~~~~~~~~~~~~~~~~L~i~ed~--~~gv~V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI 145 (815)
|||++... ....+.+++|+ .+|++|.|++++.|.|++|++.+|..|..+|.+++|.||..|||||+||+|
T Consensus 161 DLL~~~~~--------~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i 232 (359)
T 1x88_A 161 DLLNPSSD--------VSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSV 232 (359)
T ss_dssp ETTCTTSC--------TTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEE
T ss_pred EHHCCCCC--------CCCCCEEEECCCCCCCEEECCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEE
T ss_conf 12115655--------5666058865577898898287899849999999999987751461225477877776289999
Q ss_pred EEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 99984159898510798588986288886543568830116988785364999999999997258998776772123210
Q 003495 146 TIHIKEATPEGEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHLGHIPYRDSKLTRLLR 225 (815)
Q Consensus 146 ~I~~~~~~~~~~~~~~~skL~lVDLAGSEr~~ksga~g~r~kEa~~INkSLlaLg~VI~aL~~~~~hIPYRdSKLTrLLq 225 (815)
+|++.....++......|+|+|||||||||++++++.|.|++|++.||+||++||+||.+|.++..||||||||||+||+
T Consensus 233 ~i~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLq 312 (359)
T 1x88_A 233 TIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQ 312 (359)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTG
T ss_pred EEEEECCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
T ss_conf 99874355788713778899998189987354358863201777653078999999999986479977622566889999
Q ss_pred CCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 1379986310677218998994868999998989400325313665
Q 003495 226 DSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKNIKNKPEVYA 271 (815)
Q Consensus 226 dsLGGnskT~lIatISP~~~~~eETlsTL~fA~rak~Ikn~p~i~~ 271 (815)
|+||||++|+||+||||+..+++||++||+||.|||+|+|+|.+|.
T Consensus 313 dsLgGnskt~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~ 358 (359)
T 1x88_A 313 DSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358 (359)
T ss_dssp GGSSSSSEEEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC---
T ss_pred HHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEECC
T ss_conf 9758997299999978974568999999999999865667661477
No 2
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=1.00 E-value=1 Score=572.13 Aligned_cols=260 Identities=39% Similarity=0.580 Sum_probs=235.9
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCC-----CCCCCHHHHHHHHHHHHHHC-----CCCEEEEEEEEEEECCCCCCCCCCC
Q ss_conf 8877898645788312579999999-----99992899999999995417-----9806999968887725201257986
Q 003495 4 RHEKEKGVNVQLCSMRQSGPNGELP-----PEAGVIPRAVQQIFDTLESQ-----NAEYSVKVTFLELYNEEITDLLAPD 73 (815)
Q Consensus 4 l~~~~~G~N~tIlaYGqTGSGKt~t-----~~~GIIPRal~~LF~~i~~~-----~~~~sV~vS~lEIYnE~V~DLL~~~ 73 (815)
+..+++|||+|||+||||||||||| .++|||||++++||..+... +.+|.|+|||+|||||+|+|||++.
T Consensus 129 v~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~ 208 (443)
T 2owm_A 129 LDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPV 208 (443)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEEEEEEEEETTEEEETTSCC
T ss_pred HHHHHCCCCEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCEEEECCCCC
T ss_conf 88863687427998678899998886468777753799999999988765213677349999999999889756856763
Q ss_pred CHHHHHHHHHCCCCCCEEECCCCCEEECCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEEEECC
Q ss_conf 10245553210586442655999768537378990697799998685320133010124578898702899999984159
Q 003495 74 EISRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIKEAT 153 (815)
Q Consensus 74 ~~~~~~~~~~~~~~L~i~ed~~~gv~V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~I~~~~~~ 153 (815)
.. ...+..|.++||+.+|++|.|++++.|.+++|++.+|..|..+|.+++|.||..|||||+||+|+|.+....
T Consensus 209 ~~------~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~ 282 (443)
T 2owm_A 209 VP------NKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHHD 282 (443)
T ss_dssp CS------SCCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCTTEEEEEEEEEEEEC--
T ss_pred CC------CCCCCCCCEEECCCCCEECCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEEECC
T ss_conf 45------786534430377999995268779982899999999999973378633758776677719999999986035
Q ss_pred C-CCCCEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC----------------------
Q ss_conf 8-98510798588986288886543568830116988785364999999999997258----------------------
Q 003495 154 P-EGEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHL---------------------- 210 (815)
Q Consensus 154 ~-~~~~~~~~skL~lVDLAGSEr~~ksga~g~r~kEa~~INkSLlaLg~VI~aL~~~~---------------------- 210 (815)
. .+......|+|+|||||||||+.++++.|.|++|+..||+||++||+||.+|+++.
T Consensus 283 ~~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~g~~~~~~~~~ 362 (443)
T 2owm_A 283 LETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPAN 362 (443)
T ss_dssp -----CCEEEEEEEEEECCCCCC--------------CCSSHHHHHHHHHHHHHCC------------------------
T ss_pred CCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 67887406887799997988753565677664121100105789999999999860455555444322234333445677
Q ss_pred CCCCCCCCCHHHHHHCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 9987767721232101379986310677218998994868999998989400325313665
Q 003495 211 GHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKNIKNKPEVYA 271 (815)
Q Consensus 211 ~hIPYRdSKLTrLLqdsLGGnskT~lIatISP~~~~~eETlsTL~fA~rak~Ikn~p~i~~ 271 (815)
.||||||||||+||+|+||||++|+||+||||+ +++||++||+||.|||+|+|+|.+|.
T Consensus 363 ~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~vN~ 421 (443)
T 2owm_A 363 SVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAVVNQ 421 (443)
T ss_dssp -CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCCCCC
T ss_pred CCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCC--CHHHHHHHHHHHHHHHHCCCCCEECC
T ss_conf 745574547688888862799708999981643--07899999999999854456333513
No 3
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=570.12 Aligned_cols=259 Identities=54% Similarity=0.856 Sum_probs=241.6
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCC----------------CCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCC
Q ss_conf 8877898645788312579999999----------------999928999999999954179806999968887725201
Q 003495 4 RHEKEKGVNVQLCSMRQSGPNGELP----------------PEAGVIPRAVQQIFDTLESQNAEYSVKVTFLELYNEEIT 67 (815)
Q Consensus 4 l~~~~~G~N~tIlaYGqTGSGKt~t----------------~~~GIIPRal~~LF~~i~~~~~~~sV~vS~lEIYnE~V~ 67 (815)
+..+++|||+|||+||||||||||| .++|||||++++||..+...+.+|.|+|||+|||||+|+
T Consensus 93 v~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~v~vS~~EIYnE~i~ 172 (373)
T 2wbe_C 93 IEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMMEVEYTMRISYLELYNEELC 172 (373)
T ss_dssp HHHHHHTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEETTEEE
T ss_pred HHHHHCCCEEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCEEE
T ss_conf 99874794689995268889831523237654433344556788676999999999987258629999999998677678
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCEEEC--CCCCEEECCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 25798610245553210586442655--9997685373789906977999986853201330101245788987028999
Q 003495 68 DLLAPDEISRAAVEDKQKKQLPLMED--GKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSI 145 (815)
Q Consensus 68 DLL~~~~~~~~~~~~~~~~~L~i~ed--~~~gv~V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI 145 (815)
|||++.. ...+.+++| +.++++|.|++++.|.+++|++.+|..|..+|.+++|.||..|||||+||+|
T Consensus 173 DLL~~~~----------~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i 242 (373)
T 2wbe_C 173 DLLSTDD----------TTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSI 242 (373)
T ss_dssp ESSCTTS----------CSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEE
T ss_pred ECCCCCC----------CCCCEEEECCCCCCCEEECCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEE
T ss_conf 9778987----------777246741577895783686687069999999999998633043114388888886189999
Q ss_pred EEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 9998415989851079858898628888654356883-011698878536499999999999725899877677212321
Q 003495 146 TIHIKEATPEGEELIKCGKLNLVDLAGSENISRSGAR-EGRAREAGEINKSLLTLGRVINALVEHLGHIPYRDSKLTRLL 224 (815)
Q Consensus 146 ~I~~~~~~~~~~~~~~~skL~lVDLAGSEr~~ksga~-g~r~kEa~~INkSLlaLg~VI~aL~~~~~hIPYRdSKLTrLL 224 (815)
+|++......+....+.|+|+|||||||||+.++++. |.|++|+..||+||++||+||.+|.++..||||||||||+||
T Consensus 243 ~v~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lL 322 (373)
T 2wbe_C 243 VVHIRENGIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKLTRLL 322 (373)
T ss_dssp EEEECTTCTTTCCEEEEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHCSSCCCGGGCHHHHHT
T ss_pred EEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
T ss_conf 99996578888742558999999799887463236765631467888888899999999999717995762165688999
Q ss_pred HCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 013799863106772189989948689999989894003253136655
Q 003495 225 RDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKNIKNKPEVYAA 272 (815)
Q Consensus 225 qdsLGGnskT~lIatISP~~~~~eETlsTL~fA~rak~Ikn~p~i~~~ 272 (815)
+|+||||++|+||+||||+..+++||++||+||.|||+|+|+|.+|..
T Consensus 323 qdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~~ 370 (373)
T 2wbe_C 323 QESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQK 370 (373)
T ss_dssp HHHHHSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEECCCCCEE
T ss_pred HHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEECCC
T ss_conf 987389960999999699734589999999999998656665433331
No 4
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=1.00 E-value=1 Score=568.64 Aligned_cols=259 Identities=47% Similarity=0.696 Sum_probs=241.6
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCC--------CCCCCHHHHHHHHHHHHHH-CCCCEEEEEEEEEEECCCCCCCCCCCC
Q ss_conf 8877898645788312579999999--------9999289999999999541-798069999688877252012579861
Q 003495 4 RHEKEKGVNVQLCSMRQSGPNGELP--------PEAGVIPRAVQQIFDTLES-QNAEYSVKVTFLELYNEEITDLLAPDE 74 (815)
Q Consensus 4 l~~~~~G~N~tIlaYGqTGSGKt~t--------~~~GIIPRal~~LF~~i~~-~~~~~sV~vS~lEIYnE~V~DLL~~~~ 74 (815)
+..+++|||+|||+||||||||||| ..+|||||++.+||..+.. .+.+|.|++||+|||||+|+|||++..
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 173 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQ 173 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHTCSSCEEEEEEEEEEEETTEEEETTSSCT
T ss_pred HHHHHCCCEEEEEEECCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCEEEECCCCCC
T ss_conf 89986798135886568999998757558998344881889999999986514577369999899996788899778977
Q ss_pred HHHHHHHHHCCCCCCEEECCCCCEEECCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEEEECCC
Q ss_conf 02455532105864426559997685373789906977999986853201330101245788987028999999841598
Q 003495 75 ISRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIKEATP 154 (815)
Q Consensus 75 ~~~~~~~~~~~~~L~i~ed~~~gv~V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~I~~~~~~~ 154 (815)
++.+.+++++.+|++|.|++++.|.|++|++.+|..|..+|.+++|.||..|||||+||+|+|.+.....
T Consensus 174 ----------~~~l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~ 243 (372)
T 3b6u_A 174 ----------TKRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGL 243 (372)
T ss_dssp ----------TCCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC---
T ss_pred ----------CCCCEEEECCCCCEECCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEEECCC
T ss_conf ----------7773689879996752898899926799999999999976672545577877764299999999960477
Q ss_pred CCCCEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf 98510798588986288886543568830116988785364999999999997258-99877677212321013799863
Q 003495 155 EGEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHL-GHIPYRDSKLTRLLRDSLGGRTK 233 (815)
Q Consensus 155 ~~~~~~~~skL~lVDLAGSEr~~ksga~g~r~kEa~~INkSLlaLg~VI~aL~~~~-~hIPYRdSKLTrLLqdsLGGnsk 233 (815)
++......|+|+|||||||||..++++.|.|++|+..||+||++||+||.+|+++. .||||||||||+||+|+||||++
T Consensus 244 ~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnsk 323 (372)
T 3b6u_A 244 DGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAK 323 (372)
T ss_dssp --CCCEEEEEEEEEECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTSSSE
T ss_pred CCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCC
T ss_conf 88762678899999798876554457515431467565064999999999986389887866220889999986299954
Q ss_pred CCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 106772189989948689999989894003253136655
Q 003495 234 TCIIATVSPAVHCLEETLSTLDYAHRAKNIKNKPEVYAA 272 (815)
Q Consensus 234 T~lIatISP~~~~~eETlsTL~fA~rak~Ikn~p~i~~~ 272 (815)
|+||+||||+..+++||++||+||.|||+|+|+|.+|..
T Consensus 324 t~mIa~vsP~~~~~~ETlsTLrfA~rak~I~n~~~~n~~ 362 (372)
T 3b6u_A 324 TVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNED 362 (372)
T ss_dssp EEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCC-
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEECCC
T ss_conf 899999688524799999999999998645566625577
No 5
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=567.22 Aligned_cols=259 Identities=35% Similarity=0.561 Sum_probs=240.7
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCC-----CCCCCHHHHHHHHHHHHHH-----CCCCEEEEEEEEEEECCCCCCCCCCC
Q ss_conf 8877898645788312579999999-----9999289999999999541-----79806999968887725201257986
Q 003495 4 RHEKEKGVNVQLCSMRQSGPNGELP-----PEAGVIPRAVQQIFDTLES-----QNAEYSVKVTFLELYNEEITDLLAPD 73 (815)
Q Consensus 4 l~~~~~G~N~tIlaYGqTGSGKt~t-----~~~GIIPRal~~LF~~i~~-----~~~~~sV~vS~lEIYnE~V~DLL~~~ 73 (815)
+..+++|||+|||+||||||||||| .++|||||++.+||..+.. .+..|.|+|||+|||||+|+|||++.
T Consensus 91 v~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~ 170 (388)
T 3bfn_A 91 LRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPA 170 (388)
T ss_dssp HHHHTTTCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCS
T ss_pred HHHHHCCCEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCEEEEHHCCC
T ss_conf 88761696566761168889997686567556641689999999999874233777148999999999888645600167
Q ss_pred CHHHHHHHHHCCCCCCEEECCCCCEEECCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEEEECC
Q ss_conf 10245553210586442655999768537378990697799998685320133010124578898702899999984159
Q 003495 74 EISRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIKEAT 153 (815)
Q Consensus 74 ~~~~~~~~~~~~~~L~i~ed~~~gv~V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~I~~~~~~ 153 (815)
. ..+.++||+.++++|.|++++.|.+++|++.+|..|..+|.+++|.||..|||||+||+|+|.+....
T Consensus 171 ~-----------~~l~ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~ 239 (388)
T 3bfn_A 171 S-----------GDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERL 239 (388)
T ss_dssp S-----------CBCCCEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESS
T ss_pred C-----------CCCEEEECCCCCEEECCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEEECCC
T ss_conf 8-----------88459986999988536059995899999999999750265223647787777739999999982268
Q ss_pred CCCCCEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf 89851079858898628888654356883011698878536499999999999725899877677212321013799863
Q 003495 154 PEGEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHLGHIPYRDSKLTRLLRDSLGGRTK 233 (815)
Q Consensus 154 ~~~~~~~~~skL~lVDLAGSEr~~ksga~g~r~kEa~~INkSLlaLg~VI~aL~~~~~hIPYRdSKLTrLLqdsLGGnsk 233 (815)
... ....|+|+|||||||||..++++.|.|++|++.||+||++||+||.+|.++..||||||||||+||+|+||||++
T Consensus 240 ~~~--~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSkLTrlLqdsLgGnsk 317 (388)
T 3bfn_A 240 APF--RQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSAH 317 (388)
T ss_dssp TTC--CEEEEEEEEEECCCTTC--------------CCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTTTSSSTTCE
T ss_pred CCC--CEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 887--336889999989877665545675511477767506399999999999669998867565889999986089962
Q ss_pred CCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHC
Q ss_conf 106772189989948689999989894003253136655202
Q 003495 234 TCIIATVSPAVHCLEETLSTLDYAHRAKNIKNKPEVYAAREK 275 (815)
Q Consensus 234 T~lIatISP~~~~~eETlsTL~fA~rak~Ikn~p~i~~~r~k 275 (815)
|+||+||||+..+++||++||+||.|||+|+|+|.+|.....
T Consensus 318 T~mIa~iSP~~~~~~ETlsTLrfA~rak~I~n~p~~n~~~~~ 359 (388)
T 3bfn_A 318 SILIANIAPERRFYLDTVSALNFAARSKEVINRPFTNESLQP 359 (388)
T ss_dssp EEEEEEECCSGGGHHHHHHHHHHHCSEEEEC-----------
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
T ss_conf 899999798500089999999999998517576735678998
No 6
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=1.00 E-value=1 Score=564.43 Aligned_cols=258 Identities=38% Similarity=0.603 Sum_probs=240.1
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCC-----CCCCCHHHHHHHHHHHHHHCC--CCEEEEEEEEEEECCCCCCCCCCCCHH
Q ss_conf 8877898645788312579999999-----999928999999999954179--806999968887725201257986102
Q 003495 4 RHEKEKGVNVQLCSMRQSGPNGELP-----PEAGVIPRAVQQIFDTLESQN--AEYSVKVTFLELYNEEITDLLAPDEIS 76 (815)
Q Consensus 4 l~~~~~G~N~tIlaYGqTGSGKt~t-----~~~GIIPRal~~LF~~i~~~~--~~~sV~vS~lEIYnE~V~DLL~~~~~~ 76 (815)
+..+++|||+|||+||||||||||| .++|||||++.+||..+.... ..|.|++||+|||||.|+|||++..
T Consensus 72 v~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~-- 149 (369)
T 3cob_A 72 VQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQ-- 149 (369)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSS--
T ss_pred HHHHHCCCCEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCEEEECCCCCC--
T ss_conf 576646971599987899998837511799888625899999999987413575267789998770763234578755--
Q ss_pred HHHHHHHCCCCCCEEECCCCCEEECCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCC
Q ss_conf 45553210586442655999768537378990697799998685320133010124578898702899999984159898
Q 003495 77 RAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIKEATPEG 156 (815)
Q Consensus 77 ~~~~~~~~~~~L~i~ed~~~gv~V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~I~~~~~~~~~ 156 (815)
..+..+.+++|+.++++|.|++++.|.+++|++.+|..|..+|.+++|.||..|||||+||+|+|.......
T Consensus 150 ------~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-- 221 (369)
T 3cob_A 150 ------AKRLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQT-- 221 (369)
T ss_dssp ------SCCCCCEEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETTT--
T ss_pred ------CCCCCEEEEECCCCCEECCCCEEEEECCHHHHHHHHHHHHHCCEEECCCCCCCCCCCEEEEEEEEEEECCCC--
T ss_conf ------677642789979998880598799808999999999987525523034477877763389999999852787--
Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCE
Q ss_conf 51079858898628888654356883011698878536499999999999725899877677212321013799863106
Q 003495 157 EELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHLGHIPYRDSKLTRLLRDSLGGRTKTCI 236 (815)
Q Consensus 157 ~~~~~~skL~lVDLAGSEr~~ksga~g~r~kEa~~INkSLlaLg~VI~aL~~~~~hIPYRdSKLTrLLqdsLGGnskT~l 236 (815)
.....|+|+|||||||||..++++.|.|++|+..||+||++||+||.+|+++..||||||||||+||+|+||||++|+|
T Consensus 222 -~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~m 300 (369)
T 3cob_A 222 -QAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLM 300 (369)
T ss_dssp -CCEEEEEEEEEECCCSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTCSCCCGGGCHHHHHTTTTTTSSSEEEE
T ss_pred -CCEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCEEE
T ss_conf -7278889999968878754434763023477878778899999999998648996787477778878876289852799
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 772189989948689999989894003253136655
Q 003495 237 IATVSPAVHCLEETLSTLDYAHRAKNIKNKPEVYAA 272 (815)
Q Consensus 237 IatISP~~~~~eETlsTL~fA~rak~Ikn~p~i~~~ 272 (815)
||||||+..+++||++||+||.|||+|+|+|.+|..
T Consensus 301 Ia~isP~~~~~~ETl~TLrfA~rak~i~~~~~~n~~ 336 (369)
T 3cob_A 301 FVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVS 336 (369)
T ss_dssp EEEECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 999477200289999999999998654567741578
No 7
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=1.00 E-value=1 Score=563.92 Aligned_cols=256 Identities=47% Similarity=0.700 Sum_probs=240.2
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCC-----CCCCCHHHHHHHHHHHHHH--CCCCEEEEEEEEEEECCCCCCCCCCCCHH
Q ss_conf 8877898645788312579999999-----9999289999999999541--79806999968887725201257986102
Q 003495 4 RHEKEKGVNVQLCSMRQSGPNGELP-----PEAGVIPRAVQQIFDTLES--QNAEYSVKVTFLELYNEEITDLLAPDEIS 76 (815)
Q Consensus 4 l~~~~~G~N~tIlaYGqTGSGKt~t-----~~~GIIPRal~~LF~~i~~--~~~~~sV~vS~lEIYnE~V~DLL~~~~~~ 76 (815)
+..+++|||+|||+||||||||||| .++|||||++++||..++. .+..|.|++||+|||||+|+|||++.
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~--- 158 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNN--- 158 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTTTE---
T ss_pred HHHHHCCCCEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCEEEECCCCC---
T ss_conf 99985788526886468999998785358766755889999999999865368757999999999287888855677---
Q ss_pred HHHHHHHCCCCCCEEECCCCCEEECCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCC
Q ss_conf 45553210586442655999768537378990697799998685320133010124578898702899999984159898
Q 003495 77 RAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIKEATPEG 156 (815)
Q Consensus 77 ~~~~~~~~~~~L~i~ed~~~gv~V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~I~~~~~~~~~ 156 (815)
+.+.+++|+.+|++|.|++++.|.+++|++.+|..|.++|.+++|.||..|||||+||+|+|.+.... .+
T Consensus 159 ---------~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-~~ 228 (350)
T 2vvg_A 159 ---------TKLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVI-EN 228 (350)
T ss_dssp ---------EEECEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC----
T ss_pred ---------CCCEEEECCCCCEEECCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEEEECC-CC
T ss_conf ---------68425674899888158779974999999999999984146001457888876529999999995046-78
Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCE
Q ss_conf 51079858898628888654356883011698878536499999999999725899877677212321013799863106
Q 003495 157 EELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHLGHIPYRDSKLTRLLRDSLGGRTKTCI 236 (815)
Q Consensus 157 ~~~~~~skL~lVDLAGSEr~~ksga~g~r~kEa~~INkSLlaLg~VI~aL~~~~~hIPYRdSKLTrLLqdsLGGnskT~l 236 (815)
......|+|+|||||||||..++++.|.|++|+..||+||++||+||.+|.++..||||||||||+||+|+||||++|+|
T Consensus 229 ~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~m 308 (350)
T 2vvg_A 229 KEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLGGNSKTLM 308 (350)
T ss_dssp -CEEEEEEEEEEECCCCCC---------------CTTHHHHHHHHHHHHHHHTCSSCCGGGCHHHHHTTTTTTSSSEEEE
T ss_pred CCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCEEE
T ss_conf 76178899999968988755445650778899988758999999999999738998876455888998986089962899
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 772189989948689999989894003253136655
Q 003495 237 IATVSPAVHCLEETLSTLDYAHRAKNIKNKPEVYAA 272 (815)
Q Consensus 237 IatISP~~~~~eETlsTL~fA~rak~Ikn~p~i~~~ 272 (815)
|+||||+..+++||++||+||.|||+|+|+|.+|..
T Consensus 309 I~~isP~~~~~~ETl~TL~fA~rak~i~n~~~~n~~ 344 (350)
T 2vvg_A 309 CANISPASTNYDETMSTLRYADRAKQIKNKPRINED 344 (350)
T ss_dssp EEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCBS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEECCC
T ss_conf 999688400189999999999998544566612578
No 8
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=1.00 E-value=1 Score=563.40 Aligned_cols=258 Identities=41% Similarity=0.605 Sum_probs=237.7
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCC-------CCCCCHHHHHHHHHHHHHHC---CCCEEEEEEEEEEECCCCCCCCCCC
Q ss_conf 8877898645788312579999999-------99992899999999995417---9806999968887725201257986
Q 003495 4 RHEKEKGVNVQLCSMRQSGPNGELP-------PEAGVIPRAVQQIFDTLESQ---NAEYSVKVTFLELYNEEITDLLAPD 73 (815)
Q Consensus 4 l~~~~~G~N~tIlaYGqTGSGKt~t-------~~~GIIPRal~~LF~~i~~~---~~~~sV~vS~lEIYnE~V~DLL~~~ 73 (815)
+..+++|||+|||+||||||||||| .++|||||++.+||..++.. +..|.|+|||+|||||+|+|||++.
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~ 161 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPK 161 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCTT
T ss_pred HHHHHCCCEEEEEEECCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCEEEECCCCC
T ss_conf 99974697148998589999884586478765778669999999999876402677069999999996088478912355
Q ss_pred CHHHHHHHHHCCCCCCEEECCCCCEEECCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEEEECC
Q ss_conf 10245553210586442655999768537378990697799998685320133010124578898702899999984159
Q 003495 74 EISRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIKEAT 153 (815)
Q Consensus 74 ~~~~~~~~~~~~~~L~i~ed~~~gv~V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~I~~~~~~ 153 (815)
. +..+.+++|+.+|++|.|++++.|.+++|++.+|..|.++|.+++|.||..|||||+||+|.|.+....
T Consensus 162 ~----------~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~ 231 (366)
T 2zfi_A 162 N----------KGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHD 231 (366)
T ss_dssp T----------CSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEEC
T ss_pred C----------CCCCEEEECCCCCEEEECCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEEECCC
T ss_conf 6----------788568886999879769899997799999999999762246112657777776459999999996046
Q ss_pred CCC-CCEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC------------CCCCCCCCCCH
Q ss_conf 898-51079858898628888654356883011698878536499999999999725------------89987767721
Q 003495 154 PEG-EELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEH------------LGHIPYRDSKL 220 (815)
Q Consensus 154 ~~~-~~~~~~skL~lVDLAGSEr~~ksga~g~r~kEa~~INkSLlaLg~VI~aL~~~------------~~hIPYRdSKL 220 (815)
... ......|+|+|||||||||..++++.|.|++|+..||+||++||+||.+|+++ ..|||||||||
T Consensus 232 ~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkL 311 (366)
T 2zfi_A 232 AETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVL 311 (366)
T ss_dssp TTTTCEEEEEEEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHH
T ss_pred CCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 77875413676899996898864554678763004465676789999999999871234543333456677464333288
Q ss_pred HHHHHCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 232101379986310677218998994868999998989400325313665
Q 003495 221 TRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKNIKNKPEVYA 271 (815)
Q Consensus 221 TrLLqdsLGGnskT~lIatISP~~~~~eETlsTL~fA~rak~Ikn~p~i~~ 271 (815)
|+||+|+||||++|+||+||||+..+++||++||+||.|||+|+|+|.++.
T Consensus 312 T~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~~~ 362 (366)
T 2zfi_A 312 TWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNH 362 (366)
T ss_dssp HHHTGGGSSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC----------
T ss_pred HHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 999998728996099999968873349999999999999840558888999
No 9
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=1.00 E-value=1 Score=559.46 Aligned_cols=255 Identities=41% Similarity=0.594 Sum_probs=237.1
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCC--------CCCCCHHHHHHHHHHHHHHC--CCCEEEEEEEEEEECCCCCCCCCCC
Q ss_conf 8877898645788312579999999--------99992899999999995417--9806999968887725201257986
Q 003495 4 RHEKEKGVNVQLCSMRQSGPNGELP--------PEAGVIPRAVQQIFDTLESQ--NAEYSVKVTFLELYNEEITDLLAPD 73 (815)
Q Consensus 4 l~~~~~G~N~tIlaYGqTGSGKt~t--------~~~GIIPRal~~LF~~i~~~--~~~~sV~vS~lEIYnE~V~DLL~~~ 73 (815)
+..+++|||+|||+||||||||||| ..+|||||++++||..+... +.+|.|++||+|||||+|+|||++.
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~ 156 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVS 156 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTT
T ss_pred HHHHHCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCEEEECCCCC
T ss_conf 79986798248983458999996488668887555773779999999999833689539999999999877212622587
Q ss_pred CHHHHHHHHHCCCCCCEEECCCCCEEECCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEEEECC
Q ss_conf 10245553210586442655999768537378990697799998685320133010124578898702899999984159
Q 003495 74 EISRAAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIKEAT 153 (815)
Q Consensus 74 ~~~~~~~~~~~~~~L~i~ed~~~gv~V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~I~~~~~~ 153 (815)
+.++.+++|+.++++|.|++++.|.|++|++.+|..|..+|.+++|.||..|||||+||+|+|.+....
T Consensus 157 -----------~~~l~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~ 225 (365)
T 2y65_A 157 -----------KVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLE 225 (365)
T ss_dssp -----------CCSBCEEECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETT
T ss_pred -----------CCCCEEEECCCCCEEECCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEEECC
T ss_conf -----------677237887999878427889965879999999999986466523568887887639999999997058
Q ss_pred CCCCCEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 89851079858898628888654356883011698878536499999999999725-89987767721232101379986
Q 003495 154 PEGEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEH-LGHIPYRDSKLTRLLRDSLGGRT 232 (815)
Q Consensus 154 ~~~~~~~~~skL~lVDLAGSEr~~ksga~g~r~kEa~~INkSLlaLg~VI~aL~~~-~~hIPYRdSKLTrLLqdsLGGns 232 (815)
.. ....|+|+|||||||||..++++.|.|++|+..||+||++||+||.+|+++ ..||||||||||+||+|+||||+
T Consensus 226 ~~---~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns 302 (365)
T 2y65_A 226 NQ---KKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNA 302 (365)
T ss_dssp TC---CEEEEEEEEEECCCCCC----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSS
T ss_pred CC---CEEEEEEEEEECCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf 88---786899999979998820121895224789988888899999899998527888786635788898776138996
Q ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 3106772189989948689999989894003253136655
Q 003495 233 KTCIIATVSPAVHCLEETLSTLDYAHRAKNIKNKPEVYAA 272 (815)
Q Consensus 233 kT~lIatISP~~~~~eETlsTL~fA~rak~Ikn~p~i~~~ 272 (815)
+|+||+||||+..+++||++||+||.|||+|+|+|.+|..
T Consensus 303 kt~mI~~isP~~~~~~ETl~TL~fA~rak~I~n~~~~n~~ 342 (365)
T 2y65_A 303 RTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEE 342 (365)
T ss_dssp EEEEEEEECCBGGGHHHHHHHHHHHHHHTTCEEECCCEEE
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEECCC
T ss_conf 3799998467527889999999999997215675411788
No 10
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=1.00 E-value=1 Score=558.44 Aligned_cols=259 Identities=39% Similarity=0.613 Sum_probs=238.4
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCC-----CCCCCHHHHHHHHHHHHHHC-CCCEEEEEEEEEEECCCCCCCCCCCCHHH
Q ss_conf 8877898645788312579999999-----99992899999999995417-98069999688877252012579861024
Q 003495 4 RHEKEKGVNVQLCSMRQSGPNGELP-----PEAGVIPRAVQQIFDTLESQ-NAEYSVKVTFLELYNEEITDLLAPDEISR 77 (815)
Q Consensus 4 l~~~~~G~N~tIlaYGqTGSGKt~t-----~~~GIIPRal~~LF~~i~~~-~~~~sV~vS~lEIYnE~V~DLL~~~~~~~ 77 (815)
+..+++|||+|||+||||||||||| .++|||||++++||..++.. +.+|.|+|||+|||||+|+|||++..
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~--- 146 (349)
T 1t5c_A 70 IDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQ--- 146 (349)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHTBCSSSBCHHHHHHHHHHHHGGGCTTEEEEEEEEEEEEETTEEEESSSSSC---
T ss_pred HHHHHCCCCCCEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCEEEECCCCCC---
T ss_conf 99987488640562158999987687468888745889999999999747688679998899984877788667877---
Q ss_pred HHHHHHCCCCCCEEECCCCCEEECCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCC-
Q ss_conf 5553210586442655999768537378990697799998685320133010124578898702899999984159898-
Q 003495 78 AAVEDKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIKEATPEG- 156 (815)
Q Consensus 78 ~~~~~~~~~~L~i~ed~~~gv~V~gLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~I~~~~~~~~~- 156 (815)
..+++.++||+.++++|.|++++.|.+++|++.+|..|.++|.+++|.||..|||||+||+|.|.+.......
T Consensus 147 ------~~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~ 220 (349)
T 1t5c_A 147 ------KMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSN 220 (349)
T ss_dssp ------TTCCEEEEETTTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC----
T ss_pred ------CCCCCEEEECCCCCEEECCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCC
T ss_conf ------78774699889999874488799868999999999975233452336577888876399999999851688767
Q ss_pred -CCEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf -510798588986288886543568830116988785364999999999997258--99877677212321013799863
Q 003495 157 -EELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHL--GHIPYRDSKLTRLLRDSLGGRTK 233 (815)
Q Consensus 157 -~~~~~~skL~lVDLAGSEr~~ksga~g~r~kEa~~INkSLlaLg~VI~aL~~~~--~hIPYRdSKLTrLLqdsLGGnsk 233 (815)
....+.|+|+|||||||||..++++.|.|++|+..||+||++||+||.+|+++. .||||||||||+||||+||||++
T Consensus 221 ~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnsk 300 (349)
T 1t5c_A 221 CEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAK 300 (349)
T ss_dssp ---CEEEEEEEEEECCCGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSE
T ss_pred CCCCEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCE
T ss_conf 67637899999997998753221478641113354776899999999999855687777765563778999986189962
Q ss_pred CCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 1067721899899486899999898940032531366552
Q 003495 234 TCIIATVSPAVHCLEETLSTLDYAHRAKNIKNKPEVYAAR 273 (815)
Q Consensus 234 T~lIatISP~~~~~eETlsTL~fA~rak~Ikn~p~i~~~r 273 (815)
|+|||||||. +++||++||+||.|||+|+|+|.+|...
T Consensus 301 t~mI~~isP~--~~~ETlsTL~fA~rak~I~n~~~vn~~~ 338 (349)
T 1t5c_A 301 TRIICTITPV--SFDETLTALQFASTAKYMKNTPYVNEVS 338 (349)
T ss_dssp EEEEEEECTT--CSHHHHHHHHHHHHHTTCCCCCCCCEEC
T ss_pred EEEEEEECCC--CHHHHHHHHHHHHHHHHCCCCCEECCCC
T ss_conf 9999994777--7899999999999974536676536678
Done!