BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003496
(815 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 76/184 (41%), Gaps = 11/184 (5%)
Query: 345 CSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKL-- 402
+ L P+ ++ L + L +R LP+SI L LR+L + C EL LPE L
Sbjct: 113 AAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLAS 172
Query: 403 -------ENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRXXXXXXXXXXXXXXX 455
+ L +L+ L E++ I LP+SI++L LK LK
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLE 232
Query: 456 XXXXXDCN-ITEIPADIGSLSSIVWLALSG-NHFERLPTSVKQLSQLRYLHLSNCNMLQS 513
C + P G + + L L ++ LP + +L+QL L L C L
Sbjct: 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292
Query: 514 LPEL 517
LP L
Sbjct: 293 LPSL 296
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 96/219 (43%), Gaps = 21/219 (9%)
Query: 195 QAFKLKFIDLHH----SQYLTKIPDLVET-PNLERINLLNCTNLPYISSSIQNFNNLSVL 249
QAF+L L H + L ++PD + LE + L L + +SI + N L L
Sbjct: 99 QAFRLSH--LQHXTIDAAGLXELPDTXQQFAGLETLTLAR-NPLRALPASIASLNRLREL 155
Query: 250 SLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIEC 309
S+ C L P + + + + VNL LRL T I +P+SI
Sbjct: 156 SIRACPELTELPEPLA-STDASGEHQGLVNLQS----------LRLEWTGIRSLPASIAN 204
Query: 310 LTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRE- 368
L NL++L + L + +I L L L+L GC+ L +P I L + L++
Sbjct: 205 LQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263
Query: 369 TAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKS 407
+ + LP I L L KLDL C L+ LP + L +
Sbjct: 264 SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 75/190 (39%), Gaps = 18/190 (9%)
Query: 362 LEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQL 421
+ ++LR + P L L+ + D + L LP+ + L+ L + + L
Sbjct: 84 VALELRSVPLPQFPDQAFRLSHLQHXTI-DAAGLXELPDTXQQFAGLETLTLARNPLRAL 142
Query: 422 PSSISDLNQLKKLKFSGCRXXXXXXXXXXXXXXXXXXXXDCN----------ITEIPADI 471
P+SI+ LN+L++L C N I +PA I
Sbjct: 143 PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASI 202
Query: 472 GSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIY-----LVYLEA 526
+L ++ L + + L ++ L +L L L C L++ P PI+ L L
Sbjct: 203 ANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYP--PIFGGRAPLKRLIL 260
Query: 527 KNCKRLQTLP 536
K+C L TLP
Sbjct: 261 KDCSNLLTLP 270
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 1/111 (0%)
Query: 175 NLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCTNLP 234
NL L L ++ + + LK + + +S P + P LE ++L CT L
Sbjct: 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALR 243
Query: 235 YISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPI-AVDFSDCVNLTEFP 284
L L L C +L++ P +I+ + + +D CVNL+ P
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 77/151 (50%), Gaps = 8/151 (5%)
Query: 292 ELRLWNTRIEEVPS-SIECLTNLETLDLSFCKRLKRVSTSICK-LKSLCWLELGGCSNLE 349
EL L N IE +PS + + +L LDL KRL+ +S + + L +L +L LG C NL+
Sbjct: 111 ELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMC-NLK 169
Query: 350 TFPEI--LEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKS 407
P + L ++E L R IR P S + L LRKL L ++LKS
Sbjct: 170 DIPNLTALVRLEELELSGNRLDLIR--PGSFQGLTSLRKLWLMHAQVATIERNAFDDLKS 227
Query: 408 LKYLNAEFSAIGQLPSSI-SDLNQLKKLKFS 437
L+ LN + + LP + + L++L+++ +
Sbjct: 228 LEELNLSHNNLMSLPHDLFTPLHRLERVHLN 258
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 77/151 (50%), Gaps = 8/151 (5%)
Query: 292 ELRLWNTRIEEVPS-SIECLTNLETLDLSFCKRLKRVSTSICK-LKSLCWLELGGCSNLE 349
EL L N IE +PS + + +L LDL KRL+ +S + + L +L +L LG C NL+
Sbjct: 111 ELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMC-NLK 169
Query: 350 TFPEI--LEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKS 407
P + L ++E L R IR P S + L LRKL L ++LKS
Sbjct: 170 DIPNLTALVRLEELELSGNRLDLIR--PGSFQGLTSLRKLWLMHAQVATIERNAFDDLKS 227
Query: 408 LKYLNAEFSAIGQLPSSI-SDLNQLKKLKFS 437
L+ LN + + LP + + L++L+++ +
Sbjct: 228 LEELNLSHNNLMSLPHDLFTPLHRLERVHLN 258
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 110/230 (47%), Gaps = 22/230 (9%)
Query: 342 LGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEK 401
+ C++L PE+ + ++ LL + A+ +LP +EYL G+ ++L LPE
Sbjct: 97 VASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYL-GVSN------NQLEKLPE- 148
Query: 402 LENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRXXXXXXXXXXXXXXXXXXXXD 461
L+N LK ++ + +++ +LP DL + +G +
Sbjct: 149 LQNSSFLKIIDVDNNSLKKLP----DLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADN 204
Query: 462 CNITEIPADIGSLSSIVWLALSGNH-FERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIY 520
++ ++P SL SIV +GN+ E LP ++ L L ++ N N+L++LP+LP
Sbjct: 205 NSLKKLPDLPLSLESIV----AGNNILEELP-ELQNLPFLTTIYADN-NLLKTLPDLPPS 258
Query: 521 LVYLEAKNCKRLQTLPEIPSSVEELDASMLESIYEHSSGIMDGILFFDFT 570
L L ++ L LPE+P S+ LD S E+I+ S + + + + +
Sbjct: 259 LEALNVRD-NYLTDLPELPQSLTFLDVS--ENIFSGLSELPPNLYYLNAS 305
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 87/331 (26%), Positives = 144/331 (43%), Gaps = 64/331 (19%)
Query: 147 LRYLPEELRYLHWHQYSLKTLPLNFDPENLIE-LNLPYSNVEQIWEGKKQAFKLKFIDLH 205
L LP+ L+ L +LK L D L+E L + + +E++ E + +F LK ID+
Sbjct: 106 LPELPQSLKSLLVDNNNLKAL---SDLPPLLEYLGVSNNQLEKLPELQNSSF-LKIIDVD 161
Query: 206 HSQYLTKIPDLVETPNLERI--------NLLNCTNLPYISSSIQNFNNLSVLS------- 250
++ L K+PDL P+LE I L NLP++++ + N+L L
Sbjct: 162 NNS-LKKLPDL--PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLE 218
Query: 251 --LAGCRSLVSFP--RNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSS 306
+AG L P +N+ F + I ++D L P + ++ L + + + ++P
Sbjct: 219 SIVAGNNILEELPELQNLPFLTTI---YADNNLLKTLPDLPPSLEALNVRDNYLTDLPEL 275
Query: 307 IECLTNLETLDLSFC------KRLKRVSTSICKLKSLCWL-----ELGGCSN----LETF 351
+ LT L+ + F L ++ S +++SLC L EL +N L
Sbjct: 276 PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL 335
Query: 352 PEILEKM----EHLLEI-----DLRE-----TAIRNLPSSIEYLEGLRKLDLGDCSELAS 397
P LE++ HL E+ +L++ +R P E +E LR S LA
Sbjct: 336 PPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRM-----NSHLAE 390
Query: 398 LPEKLENLKSLKYLNAEFSAIGQLPSSISDL 428
+PE +NLK L +P S+ DL
Sbjct: 391 VPELPQNLKQLHVETNPLREFPDIPESVEDL 421
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 80/343 (23%), Positives = 143/343 (41%), Gaps = 58/343 (16%)
Query: 224 RINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEF 283
+N L ++LP + +++ +A C SL P + VD ++ L++
Sbjct: 77 ELNNLGLSSLPELPPHLESL-------VASCNSLTELPELPQSLKSLLVDNNNLKALSDL 129
Query: 284 PLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLC-WLEL 342
P + + L + N ++E++P E + SF K + + S+ KL L LE
Sbjct: 130 PPL---LEYLGVSNNQLEKLP---------ELQNSSFLKIIDVDNNSLKKLPDLPPSLEF 177
Query: 343 --GGCSNLETFPEILEKMEHLLEIDLRETAIRNLP-------------SSIEYLEGLRKL 387
G + LE PE L+ + L I +++ LP + +E L L+ L
Sbjct: 178 IAAGNNQLEELPE-LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNL 236
Query: 388 DL-----GDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRXX 442
D + L +LP+ +L++L + + + +LP S++ L+ + + FSG
Sbjct: 237 PFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENI-FSGL--- 292
Query: 443 XXXXXXXXXXXXXXXXXXDCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRY 502
+ + EI + S+ L +S N LP +L +L
Sbjct: 293 --------SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERL-- 342
Query: 503 LHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTLPEIPSSVEEL 545
+++ N L +PELP L L + L+ P+IP SVE+L
Sbjct: 343 --IASFNHLAEVPELPQNLKQLHVE-YNPLREFPDIPESVEDL 382
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 7/165 (4%)
Query: 279 NLTEFP-LVSGNIIELRLWNTRIEEVP-SSIECLTNLETLDLSFCKRLKRVSTSICKLKS 336
NL E P +S N L L +I+ + +S + L +LE L LS + L +
Sbjct: 54 NLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLAN 113
Query: 337 LCWLELGGCSNLETFPE-ILEKMEHLLEIDLRETAIRNLPS-SIEYLEGLRKLDLGDCSE 394
L LEL + L T P + L E+ LR I ++PS + + LR+LDLG+
Sbjct: 114 LNTLELFD-NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR 172
Query: 395 LASLPE-KLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSG 438
L+ + E E L +L+YLN + ++P +++ L +L +L SG
Sbjct: 173 LSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSG 216
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 509 NMLQSLPELPIYLVYLEAKNCKRLQTLPEIPSSVEELD 546
N L SLPELP L YL+A + RL TLPE+P+S++ LD
Sbjct: 90 NALISLPELPASLEYLDACD-NRLSTLPELPASLKHLD 126
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 500 LRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTLPEIPSSVEELDAS--MLESI 553
L Y++ N N L LPELP L L +N +L LPE+P S+E LD S +LES+
Sbjct: 142 LEYINADN-NQLTXLPELPTSLEVLSVRN-NQLTFLPELPESLEALDVSTNLLESL 195
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 342 LGGCSN-LETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPE 400
L C N L T PE+ ++HL + + T + LP+ +EY+ D ++L LPE
Sbjct: 105 LDACDNRLSTLPELPASLKHLDVDNNQLTXLPELPALLEYIN-------ADNNQLTXLPE 157
Query: 401 KLENLKSLKYLNAEFSAIGQLPSSISDLN 429
+L+ L N + + + +LP S+ L+
Sbjct: 158 LPTSLEVLSVRNNQLTFLPELPESLEALD 186
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 504 HLSNC-NMLQSLPELPIYLVYLEAKNCKRLQTLPEIPSSVEELDA 547
+L C N L +LPELP L +L+ N +L LPE+P+ +E ++A
Sbjct: 104 YLDACDNRLSTLPELPASLKHLDVDN-NQLTXLPELPALLEYINA 147
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 100/232 (43%), Gaps = 17/232 (7%)
Query: 296 WNTRIEEVPSSIECLT-NLETLDLSFCKRLKRVSTSICK--LKSLCWLELGGCSNLETFP 352
+N E+P S+ L+ +L TLDLS + ++C+ +L L L P
Sbjct: 349 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 408
Query: 353 EILEKMEHLLEIDLRETAIRN-LPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYL 411
L L+ + L + +PSS+ L LR L L +P++L +K+L+ L
Sbjct: 409 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 468
Query: 412 NAEFSAI-GQLPSSISDLNQLKKLKFSGCRXXXXXXXXXXXXXXXXXXXXDCNI--TEIP 468
+F+ + G++PS +S+ L + S R N IP
Sbjct: 469 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 528
Query: 469 ADIGSLSSIVWLALSGNHFE-RLPTSV-KQLSQL--------RYLHLSNCNM 510
A++G S++WL L+ N F +P ++ KQ ++ RY+++ N M
Sbjct: 529 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 580
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 466 EIPADIGSLSSIVWLALSGNHFE-RLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYL 524
IP ++G L + L LS N + R+P ++ L+ L + LSN N+ +PE+ + +
Sbjct: 668 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFP 727
Query: 525 EAK 527
AK
Sbjct: 728 PAK 730
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 60/150 (40%), Gaps = 27/150 (18%)
Query: 262 RNIYFRSPIAVDFSDCVNLTE----FPLVSGNII----------ELRLWNTRIE-EVPSS 306
+N F I S+C L F +SG I +L+LW +E E+P
Sbjct: 399 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 458
Query: 307 IECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDL 366
+ + LETL L F + + + +L W+ L P+ + ++E+L + L
Sbjct: 459 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 518
Query: 367 RETAIR-NLPSSIEYLEGLRKLDLGDCSEL 395
+ N+P+ +LGDC L
Sbjct: 519 SNNSFSGNIPA-----------ELGDCRSL 537
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 100/232 (43%), Gaps = 17/232 (7%)
Query: 296 WNTRIEEVPSSIECLT-NLETLDLSFCKRLKRVSTSICK--LKSLCWLELGGCSNLETFP 352
+N E+P S+ L+ +L TLDLS + ++C+ +L L L P
Sbjct: 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411
Query: 353 EILEKMEHLLEIDLRETAIRN-LPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYL 411
L L+ + L + +PSS+ L LR L L +P++L +K+L+ L
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471
Query: 412 NAEFSAI-GQLPSSISDLNQLKKLKFSGCRXXXXXXXXXXXXXXXXXXXXDCNI--TEIP 468
+F+ + G++PS +S+ L + S R N IP
Sbjct: 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531
Query: 469 ADIGSLSSIVWLALSGNHFE-RLPTSV-KQLSQL--------RYLHLSNCNM 510
A++G S++WL L+ N F +P ++ KQ ++ RY+++ N M
Sbjct: 532 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 466 EIPADIGSLSSIVWLALSGNHFE-RLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYL 524
IP ++G L + L LS N + R+P ++ L+ L + LSN N+ +PE+ + +
Sbjct: 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFP 730
Query: 525 EAK 527
AK
Sbjct: 731 PAK 733
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 13/106 (12%)
Query: 292 ELRLWNTRIE-EVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLET 350
+L+LW +E E+P + + LETL L F + + + +L W+ L
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505
Query: 351 FPEILEKMEHLLEIDLRETAIR-NLPSSIEYLEGLRKLDLGDCSEL 395
P+ + ++E+L + L + N+P+ +LGDC L
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPA-----------ELGDCRSL 540
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 463 NITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLP 515
++TE+PA+I +LS++ L LS N LP + QL+Y + + NM+ +LP
Sbjct: 258 SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD-NMVTTLP 309
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 24/126 (19%)
Query: 364 IDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPS 423
+DL I N+ ++I + L +L L S L LP +++NL +L+ L+ + + LP+
Sbjct: 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSLPA 287
Query: 424 SISDLNQLKKLKFSGCRXXXXXXXXXXXXXXXXXXXXDCNITEIPADIGSLSSIVWLALS 483
+ QLK F D +T +P + G+L ++ +L +
Sbjct: 288 ELGSCFQLKYFYF-----------------------FDNMVTTLPWEFGNLCNLQFLGVE 324
Query: 484 GNHFER 489
GN E+
Sbjct: 325 GNPLEK 330
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 461 DCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLP 515
+ I I A+I + L L+GN LP +K LS LR L LS+ N L SLP
Sbjct: 233 NLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLP 286
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 346 SNLETF--PEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLE 403
SNL+ F + K + L + L ++ LP+ I+ L LR LDL + L SLP +L
Sbjct: 232 SNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLPAELG 290
Query: 404 NLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSG 438
+ LKY + + LP +L L+ L G
Sbjct: 291 SCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEG 325
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 4/76 (5%)
Query: 364 IDLRETAIRNLPSSI-EYLEGLRKLDLGDCSELASLPEKLEN-LKSLKYLNAEFSAIGQL 421
+DL ++++LP+ + + L L +L LG ++L SLP + N L SL YLN + + L
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGG-NKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 422 PSSISD-LNQLKKLKF 436
P+ + D L QLK+L
Sbjct: 92 PNGVFDKLTQLKELAL 107
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 474 LSSIVWLALSGNHFERLPTSV-KQLSQLRYLHLSNCNMLQSLPELPI-YLVYLE--AKNC 529
L+S+ L L GN + LP V +L+ L YL+LS N LQSLP L L+ A N
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST-NQLQSLPNGVFDKLTQLKELALNT 109
Query: 530 KRLQTLPE 537
+LQ+LP+
Sbjct: 110 NQLQSLPD 117
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 23/115 (20%)
Query: 327 VSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRK 386
+ +S+ L L +L +GG +NL + +P +I L L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNL----------------------VGPIPPAIAKLTQLHY 105
Query: 387 LDLGDCSELASLPEKLENLKSLKYLNAEFSAI-GQLPSSISDLNQLKKLKFSGCR 440
L + + ++P+ L +K+L L+ ++A+ G LP SIS L L + F G R
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 467 IPADIGSLSSIVWLALSG--NHFERLPTSVKQLSQLRYLHLSNCNMLQSLPEL 517
IP+ + +L + +L + G N +P ++ +L+QL YL++++ N+ ++P+
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF 120
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 110/227 (48%), Gaps = 27/227 (11%)
Query: 227 LLNCTNLPYISSSIQNFNNLSVLSLAGCRSL--VSFPRNIYFRSPIA-------VDFSDC 277
L N TNL + S +++S LS G SL +SF + P+A +D S
Sbjct: 129 LKNLTNLNRLELSSNTISDISALS--GLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 186
Query: 278 VNLTEFPLVS--GNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLK 335
+++ +++ N+ L N +I ++ + + LTNL+ L L+ +LK + T + L
Sbjct: 187 -KVSDISVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLN-GNQLKDIGT-LASLT 242
Query: 336 SLCWLELGG--CSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCS 393
+L L+L SNL L + L E+ L I N+ S + L L L+L + +
Sbjct: 243 NLTDLDLANNQISNLAP----LSGLTKLTELKLGANQISNI-SPLAGLTALTNLELNE-N 296
Query: 394 ELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCR 440
+L + + NLK+L YL F+ I + S +S L +L++L F+ +
Sbjct: 297 QLEDI-SPISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFANNK 341
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 107/278 (38%), Gaps = 39/278 (14%)
Query: 300 IEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCW------LELGGCSNLETFPE 353
++++ CLTN+ + L VS +I ++K + LEL C FP
Sbjct: 271 LDDIIDLFNCLTNVSSFSL--------VSVTIERVKDFSYNFGWQHLELVNCK-FGQFPT 321
Query: 354 ILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDL--------GDCSELASLPEKLENL 405
+ K++ L + N S ++ L L LDL G CS+
Sbjct: 322 L--KLKSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDF------GT 372
Query: 406 KSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRXXXXXXXXXXXXXXXXXXXXDCNIT 465
SLKYL+ F+ + + S+ L QL+ L F +
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432
Query: 466 EIPADIG---SLSSIVWLALSGNHFER--LPTSVKQLSQLRYLHLSNCNMLQSLPELPIY 520
A G LSS+ L ++GN F+ LP +L L +L LS C + Q P
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Query: 521 LVYLEAKNCKRLQTLPEIPSSVEELDASMLESIYEHSS 558
L L+ N Q L +P + + S L+ I+ H++
Sbjct: 493 LSSLQVLNMASNQ-LKSVPDGIFDRLTS-LQKIWLHTN 528
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 94/236 (39%), Gaps = 11/236 (4%)
Query: 207 SQYLTKIPDLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSL--VSFPRNI 264
S + ++ D + + L+NC + + +++ L+ S G + V P
Sbjct: 291 SVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLE 350
Query: 265 YFR-SPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKR 323
+ S + F C + ++F S ++L + + S+ L LE LD
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF--NGVITMSSNFLGLEQLEHLDFQH-SN 407
Query: 324 LKRVS--TSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRN--LPSSIE 379
LK++S + L++L +L++ F I + L + + + + LP
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467
Query: 380 YLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISD-LNQLKKL 434
L L LDL C P +L SL+ LN + + +P I D L L+K+
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI 523
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 70/127 (55%), Gaps = 6/127 (4%)
Query: 289 NIIELRLWNTRIEEVPSSI-ECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSN 347
N+ L L +++ +P+ + + LTNL+ L L + KL +L +L L +
Sbjct: 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH-NQ 144
Query: 348 LETFPE-ILEKMEHLLEIDLRETAIRNLPSSI-EYLEGLRKLDLGDCSELASLPEKL-EN 404
L++ P+ + +K+ +L E+DL +++LP + + L L+ L L ++L S+P+ + +
Sbjct: 145 LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDR 203
Query: 405 LKSLKYL 411
L SL+Y+
Sbjct: 204 LTSLQYI 210
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 16/100 (16%)
Query: 474 LSSIVWLALSGNHFERLPTSV-KQLSQLRYLHLSNCNMLQSLPELPI----YLVYLEAKN 528
L+++ +L L+GN + LP V +L+ L+ L L N LQSLP+ L YL +
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTNLTYLNLAH 142
Query: 529 CKRLQTLP----EIPSSVEELDAS--MLESIYEHSSGIMD 562
+LQ+LP + +++ ELD S L+S+ E G+ D
Sbjct: 143 -NQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE---GVFD 178
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 108/223 (48%), Gaps = 27/223 (12%)
Query: 227 LLNCTNLPYISSSIQNFNNLSVLSLAGCRSL--VSFPRNIYFRSPIA-------VDFSDC 277
L N TNL + S +++S LS G SL +SF + P+A +D S
Sbjct: 130 LKNLTNLNRLELSSNTISDISALS--GLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 187
Query: 278 VNLTEFPLVS--GNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLK 335
+++ +++ N+ L N +I ++ + + LTNL+ L L+ +LK + T + L
Sbjct: 188 -KVSDISVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLN-GNQLKDIGT-LASLT 243
Query: 336 SLCWLELGG--CSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCS 393
+L L+L SNL L + L E+ L I N+ S + L L L+L + +
Sbjct: 244 NLTDLDLANNQISNLAP----LSGLTKLTELKLGANQISNI-SPLAGLTALTNLELNE-N 297
Query: 394 ELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKF 436
+L + + NLK+L YL F+ I + S +S L +L++L F
Sbjct: 298 QLEDI-SPISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFF 338
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 110/287 (38%), Gaps = 45/287 (15%)
Query: 290 IIELRL--WNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCW------LE 341
I E RL + ++++ CLTN+ + L VS +I ++K + LE
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL--------VSVTIERVKDFSYNFGWQHLE 310
Query: 342 LGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDL--------GDCS 393
L C FP + K++ L + N S ++ L L LDL G CS
Sbjct: 311 LVNCK-FGQFPTL--KLKSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCS 366
Query: 394 ELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRXXXXXXXXXXXXX 453
+ SLKYL+ F+ + + S+ L QL+ L F
Sbjct: 367 QSDF------GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420
Query: 454 XXXXXXXDCNITEIPADIG---SLSSIVWLALSGNHFER--LPTSVKQLSQLRYLHLSNC 508
+ A G LSS+ L ++GN F+ LP +L L +L LS C
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480
Query: 509 NMLQSLPELPIYLVYLEAKNCKR-----LQTLP-EIPSSVEELDASM 549
+ Q P L L+ N L T P + +S++ LD S+
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 527
>pdb|3E0L|A Chain A, Computationally Designed Ammelide Deaminase
pdb|3E0L|B Chain B, Computationally Designed Ammelide Deaminase
Length = 455
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 85 VLKKNKGTDAIEGILLNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVP-------IM 137
V N ++ + G L N++KTRD+H+ ++ N + +K P YK ++
Sbjct: 213 VTPGNGVSETLMGELGNIAKTRDLHIQSHISENRDEVEAVKNLYPSYKNYTSVYDKNNLL 272
Query: 138 SSKVHLDQGLRYLPEELRYLHWHQYSLKTLP 168
++K + G EEL H S+ P
Sbjct: 273 TNKTVMAHGCYLSAEELNVFHERGASIAHCP 303
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 70/127 (55%), Gaps = 6/127 (4%)
Query: 289 NIIELRLWNTRIEEVPSSI-ECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSN 347
N+ L L +++ +P+ + + LTNL+ L L + KL +L +L L +
Sbjct: 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYH-NQ 144
Query: 348 LETFPE-ILEKMEHLLEIDLRETAIRNLPSSI-EYLEGLRKLDLGDCSELASLPEKL-EN 404
L++ P+ + +K+ +L +DL +++LP + + L L++L L D ++L S+P+ + +
Sbjct: 145 LQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLND-NQLKSVPDGVFDR 203
Query: 405 LKSLKYL 411
L SL ++
Sbjct: 204 LTSLTHI 210
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 474 LSSIVWLALSGNHFERLPTSV-KQLSQLRYLHLSNCNMLQSLPE 516
L+++ +L L+GN + LP V +L+ L+ L L N LQSLP+
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPD 126
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 67/159 (42%), Gaps = 26/159 (16%)
Query: 383 GLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDL----NQLKKLKFSG 438
GL++L + D ++LASLP L L N + +++ LPS + +L NQL L
Sbjct: 142 GLQELSVSD-NQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLP--- 197
Query: 439 CRXXXXXXXXXXXXXXXXXXXXDCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLS 498
+ +T +PA L ++ +SGN LP +L
Sbjct: 198 ----------TLPSELYKLWAYNNRLTSLPALPSGLKELI---VSGNRLTSLPVLPSELK 244
Query: 499 QLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTLPE 537
+L + + N L SLP LP L+ L +L LPE
Sbjct: 245 EL----MVSGNRLTSLPMLPSGLLSLSVYR-NQLTRLPE 278
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 484 GNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTLPEIPSSVE 543
GN LP L +L + N L SLP LP L L A N +L +LP +PS ++
Sbjct: 130 GNQLTSLPVLPPGLQELSV----SDNQLASLPALPSELCKLWAYN-NQLTSLPMLPSGLQ 184
Query: 544 ELDAS 548
EL S
Sbjct: 185 ELSVS 189
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 492 TSVKQL-SQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTLPEIPSSVEELDAS 548
TS+ L S L+ L +S+ N L SLP LP L L A N RL +LP +PS ++EL S
Sbjct: 174 TSLPMLPSGLQELSVSD-NQLASLPTLPSELYKLWAYN-NRLTSLPALPSGLKELIVS 229
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 480 LALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKNCKRLQTLPEIP 539
L++S N LPT +L +L + N L SLP LP L L RL +LP +P
Sbjct: 186 LSVSDNQLASLPTLPSELYKLWAYN----NRLTSLPALPSGLKELIVSG-NRLTSLPVLP 240
Query: 540 SSVEELDAS--MLESIYEHSSGIM 561
S ++EL S L S+ SG++
Sbjct: 241 SELKELMVSGNRLTSLPMLPSGLL 264
>pdb|2UZ9|A Chain A, Human Guanine Deaminase (Guad) In Complex With Zinc And
Its Product Xanthine.
pdb|4AQL|A Chain A, Human Guanine Deaminase In Complex With Valacyclovir
Length = 476
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 92 TDAIEGILLNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVP-------IMSSKVHLD 144
++ + G L N++KTRD+H+ ++ N + +K P YK ++++K +
Sbjct: 241 SETLMGELGNIAKTRDLHIQSHISENRDEVEAVKNLYPSYKNYTSVYDKNNLLTNKTVMA 300
Query: 145 QGLRYLPEELRYLHWHQYSLKTLP 168
G EEL H S+ P
Sbjct: 301 HGCYLSAEELNVFHERGASIAHCP 324
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 32.7 bits (73), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 83/214 (38%), Gaps = 8/214 (3%)
Query: 300 IEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKME 359
++ VP I + L + + S C+ ++ WL + ++ +
Sbjct: 23 LQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA--AAFTGLA 80
Query: 360 HLLEIDLRETA-IRNL-PSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSA 417
L ++DL + A +R++ P++ L L L L C P L +L+YL + +A
Sbjct: 81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA 140
Query: 418 IGQLP-SSISDLNQLKKLKFSGCRXXXXXXXXXXXXXXXXXXXXDCN-ITEI-PADIGSL 474
+ LP + DL L L G R N + + P L
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200
Query: 475 SSIVWLALSGNHFERLPT-SVKQLSQLRYLHLSN 507
++ L L N+ LPT ++ L L+YL L++
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 32.7 bits (73), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 83/214 (38%), Gaps = 8/214 (3%)
Query: 300 IEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKME 359
++ VP I + L + + S C+ ++ WL + ++ +
Sbjct: 22 LQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA--AAFTGLA 79
Query: 360 HLLEIDLRETA-IRNL-PSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSA 417
L ++DL + A +R++ P++ L L L L C P L +L+YL + +A
Sbjct: 80 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA 139
Query: 418 IGQLP-SSISDLNQLKKLKFSGCRXXXXXXXXXXXXXXXXXXXXDCN-ITEI-PADIGSL 474
+ LP + DL L L G R N + + P L
Sbjct: 140 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 199
Query: 475 SSIVWLALSGNHFERLPT-SVKQLSQLRYLHLSN 507
++ L L N+ LPT ++ L L+YL L++
Sbjct: 200 GRLMTLYLFANNLSALPTEALAPLRALQYLRLND 233
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 87/228 (38%), Gaps = 41/228 (17%)
Query: 309 CLTNLETLDLSFCKRLKRVSTSICKLKSLCW------LELGGCSNLETFPEILEKMEHLL 362
CLTN+ + L VS +I ++K + LEL C FP + K++ L
Sbjct: 304 CLTNVSSFSL--------VSVTIERVKDFSYNFGWQHLELVNCK-FGQFPTL--KLKSLK 352
Query: 363 EIDLRETAIRNLPSSIEYLEGLRKLDL--------GDCSE--LASLPEKLENLKSLKYLN 412
+ N S ++ L L LDL G CS+ ++ SLKYL+
Sbjct: 353 RLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTI--------SLKYLD 403
Query: 413 AEFSAIGQLPSSISDLNQLKKLKFSGCRXXXXXXXXXXXXXXXXXXXXDCNITEIPADIG 472
F+ + + S+ L QL+ L F + A G
Sbjct: 404 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 463
Query: 473 ---SLSSIVWLALSGNHFER--LPTSVKQLSQLRYLHLSNCNMLQSLP 515
LSS+ L ++GN F+ LP +L L +L LS C + Q P
Sbjct: 464 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 511
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 94/238 (39%), Gaps = 15/238 (6%)
Query: 210 LTKIPDLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSL--VSFPRNIYFR 267
+ ++ D + + L+NC + + +++ L+ S G + V P +
Sbjct: 318 IERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLD 377
Query: 268 -SPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKR 326
S + F C + ++F +S ++L + + S+ L LE LD LK+
Sbjct: 378 LSRNGLSFKGCCSQSDFGTISLKYLDLSF--NGVITMSSNFLGLEQLEHLDFQH-SNLKQ 434
Query: 327 VS--TSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRN--LPSSIEYLE 382
+S + L++L +L++ F I + L + + + + LP L
Sbjct: 435 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 494
Query: 383 GLRKLDLGDCSELASLPEKLENLKSLKYLNAE---FSAIGQLPSSISDLNQLKKLKFS 437
L LDL C P +L SL+ LN F ++ P LN L+ L +S
Sbjct: 495 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC--LNSLQVLDYS 550
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 75/142 (52%), Gaps = 8/142 (5%)
Query: 299 RIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPE-ILEK 357
++ +PS+I T + LDL K S + +L L L L + L+T P I ++
Sbjct: 27 KLTAIPSNIPADT--KKLDLQSNKLSSLPSKAFHRLTKLRLLYLND-NKLQTLPAGIFKE 83
Query: 358 MEHLLEIDLRETAIRNLPSSI-EYLEGLRKLDLGDCSELASLPEKL-ENLKSLKYLNAEF 415
+++L + + + ++ LP + + L L +L L D ++L SLP ++ ++L L YL+ +
Sbjct: 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRL-DRNQLKSLPPRVFDSLTKLTYLSLGY 142
Query: 416 SAIGQLPSSISD-LNQLKKLKF 436
+ + LP + D L LK+L+
Sbjct: 143 NELQSLPKGVFDKLTSLKELRL 164
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 77/178 (43%), Gaps = 46/178 (25%)
Query: 153 ELRYLHWHQYSLKTLPLNFDPENLIELNLPYSNVEQIW--EGKKQAFKLKFIDLHHSQYL 210
+LR L+ + L+TLP E N+E +W + K QA + D
Sbjct: 62 KLRLLYLNDNKLQTLPAGIFKE--------LKNLETLWVTDNKLQALPIGVFD------- 106
Query: 211 TKIPDLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPI 270
++ +L E L+R L + P + S+ LS+ G L S P+ ++ +
Sbjct: 107 -QLVNLAEL-RLDRNQLKSLP--PRVFDSLTKLTYLSL----GYNELQSLPKGVFDK--- 155
Query: 271 AVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVP-SSIECLTNLETLDLSFCKRLKRV 327
LT ++ ELRL+N +++ VP + + LT L+TL L +LKRV
Sbjct: 156 ---------LT-------SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN-NQLKRV 196
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 14/146 (9%)
Query: 287 SGNIIELRLWNTRIEEVPSSIECLTNLETL---DLSFCKRLKRVSTSICKLKSLCWLELG 343
SG ++ R + R VP+ I TN + L D K V S+ LK L +L
Sbjct: 20 SGTTVDCR--SKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKEL-YL--- 71
Query: 344 GCSNLETFP-EILEKMEHLLEIDLRETAIRNLPSSI-EYLEGLRKLDLGDCSELASLPEK 401
G + L P + + + L +DL + LPS++ + L L++L + C++L LP
Sbjct: 72 GSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC-CNKLTELPRG 130
Query: 402 LENLKSLKYLNAEFSAIGQLPSSISD 427
+E L L +L + + + +P D
Sbjct: 131 IERLTHLTHLALDQNQLKSIPHGAFD 156
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 27/134 (20%)
Query: 375 PSSIEYLEGLRKLDLGDCSELASLPEKL-ENLKSLKYLNAEFSAIGQLPSSISD-LNQLK 432
P + L L++L LG ++L +LP + ++L L L+ + + LPS++ D L LK
Sbjct: 57 PGVFDSLINLKELYLGS-NQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK 115
Query: 433 KLKFSGCRXXXXXXXXXXXXXXXXXXXXDCNITEIPADIGSLSSIVWLALSGNHFERLP- 491
+L F C +TE+P I L+ + LAL N + +P
Sbjct: 116 EL-FMCCN----------------------KLTELPRGIERLTHLTHLALDQNQLKSIPH 152
Query: 492 TSVKQLSQLRYLHL 505
+ +LS L + +L
Sbjct: 153 GAFDRLSSLTHAYL 166
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 26/130 (20%)
Query: 290 IIELRLWNTRIEEVPSSIECLTNLETLDL---SFCKRLKRVSTSICKLKSLCWLELGGCS 346
+ EL L + +PS IE + +L+ L L SF + + + S L+ L +++ G
Sbjct: 279 VQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDL-YIK-GNMR 336
Query: 347 NLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLK 406
L+ LEK+E+L ++DL + I + DC L +L+NL+
Sbjct: 337 KLDLGTRCLEKLENLQKLDLSHSDI----------------EASDCCNL-----QLKNLR 375
Query: 407 SLKYLNAEFS 416
L+YLN ++
Sbjct: 376 HLQYLNLSYN 385
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 67/152 (44%), Gaps = 9/152 (5%)
Query: 291 IELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLET 350
I + + ++ +VP I T + +DLSF S S L WL+L C +ET
Sbjct: 14 ITYQCMDQKLSKVPDDIPSST--KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE-IET 70
Query: 351 FPE-ILEKMEHLLEIDLRETAIRNL-PSSIEYLEGLRKLDLGDCSELASLPE-KLENLKS 407
+ + HL + L I++ P S L L L + ++LASL + L +
Sbjct: 71 IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL-VAVETKLASLESFPIGQLIT 129
Query: 408 LKYLNAEFSAIG--QLPSSISDLNQLKKLKFS 437
LK LN + I +LP+ S+L L + S
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 161
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 359 EHLLEIDLRETAIRNLP-SSIEYLEGLRKLDLGD--CSELASLPEKLENLKSLKYLNAEF 415
E + EI L + I+ +P + + LR++DL + SELA P+ + L+SL L
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA--PDAFQGLRSLNSLVLYG 89
Query: 416 SAIGQLPSSI 425
+ I +LP S+
Sbjct: 90 NKITELPKSL 99
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 67/152 (44%), Gaps = 9/152 (5%)
Query: 291 IELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLET 350
I + + ++ +VP I T + +DLSF S S L WL+L C +ET
Sbjct: 9 ITYQCMDQKLSKVPDDIPSST--KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE-IET 65
Query: 351 FPE-ILEKMEHLLEIDLRETAIRNL-PSSIEYLEGLRKLDLGDCSELASLPE-KLENLKS 407
+ + HL + L I++ P S L L L + ++LASL + L +
Sbjct: 66 IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL-VAVETKLASLESFPIGQLIT 124
Query: 408 LKYLNAEFSAIG--QLPSSISDLNQLKKLKFS 437
LK LN + I +LP+ S+L L + S
Sbjct: 125 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 156
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 359 EHLLEIDLRETAIRNLP-SSIEYLEGLRKLDLGD--CSELASLPEKLENLKSLKYLNAEF 415
E + EI L + I+ +P + + LR++DL + SELA P+ + L+SL L
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA--PDAFQGLRSLNSLVLYG 89
Query: 416 SAIGQLPSSI 425
+ I +LP S+
Sbjct: 90 NKITELPKSL 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,852,733
Number of Sequences: 62578
Number of extensions: 1004158
Number of successful extensions: 2950
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 2831
Number of HSP's gapped (non-prelim): 115
length of query: 815
length of database: 14,973,337
effective HSP length: 107
effective length of query: 708
effective length of database: 8,277,491
effective search space: 5860463628
effective search space used: 5860463628
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)