Query 003496
Match_columns 815
No_of_seqs 703 out of 5429
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 00:32:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003496.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003496hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 3.2E-71 7E-76 681.3 54.5 644 1-759 441-1099(1153)
2 PLN00113 leucine-rich repeat r 100.0 1E-38 2.2E-43 394.0 28.3 462 56-531 30-511 (968)
3 PLN00113 leucine-rich repeat r 100.0 1.1E-37 2.3E-42 385.0 26.7 441 94-536 94-588 (968)
4 KOG0444 Cytoskeletal regulator 100.0 1.3E-31 2.9E-36 281.7 -2.3 368 118-515 6-379 (1255)
5 KOG0444 Cytoskeletal regulator 100.0 1.6E-31 3.4E-36 281.2 -3.8 361 153-537 8-380 (1255)
6 KOG0472 Leucine-rich repeat pr 99.9 2.4E-31 5.1E-36 267.4 -13.5 383 113-510 85-540 (565)
7 KOG4194 Membrane glycoprotein 99.9 2.5E-27 5.5E-32 248.6 7.1 335 122-466 81-430 (873)
8 KOG0472 Leucine-rich repeat pr 99.9 8E-30 1.7E-34 256.4 -11.1 370 114-500 63-483 (565)
9 KOG4194 Membrane glycoprotein 99.9 2E-27 4.3E-32 249.4 5.3 380 120-507 53-448 (873)
10 KOG0618 Serine/threonine phosp 99.9 8.3E-28 1.8E-32 265.5 -6.6 380 114-509 40-463 (1081)
11 KOG4658 Apoptotic ATPase [Sign 99.9 2.3E-25 4.9E-30 261.0 10.7 399 2-537 416-847 (889)
12 PLN03210 Resistant to P. syrin 99.9 3.1E-22 6.8E-27 247.6 26.4 285 113-417 582-904 (1153)
13 KOG0618 Serine/threonine phosp 99.9 5.5E-25 1.2E-29 243.4 -0.9 385 153-550 46-486 (1081)
14 PRK15387 E3 ubiquitin-protein 99.8 4.7E-18 1E-22 195.4 16.6 71 153-230 202-272 (788)
15 PRK15387 E3 ubiquitin-protein 99.7 2.1E-17 4.6E-22 190.0 17.7 260 175-514 202-461 (788)
16 PRK15370 E3 ubiquitin-protein 99.7 6.6E-16 1.4E-20 179.1 15.2 76 360-440 347-426 (754)
17 KOG4237 Extracellular matrix p 99.7 7E-18 1.5E-22 170.7 -1.8 267 149-416 64-356 (498)
18 PRK15370 E3 ubiquitin-protein 99.7 4.9E-16 1.1E-20 180.2 12.6 243 221-509 179-426 (754)
19 KOG0617 Ras suppressor protein 99.5 8.1E-16 1.7E-20 138.4 -2.4 155 332-509 30-184 (264)
20 cd00116 LRR_RI Leucine-rich re 99.5 4.9E-15 1.1E-19 159.5 -0.3 59 451-509 249-318 (319)
21 cd00116 LRR_RI Leucine-rich re 99.5 1E-14 2.2E-19 157.1 2.0 190 304-511 74-291 (319)
22 KOG0617 Ras suppressor protein 99.4 2.2E-15 4.7E-20 135.6 -4.6 163 380-548 31-198 (264)
23 KOG4237 Extracellular matrix p 99.4 5.6E-14 1.2E-18 142.8 -0.4 298 158-488 52-359 (498)
24 KOG4658 Apoptotic ATPase [Sign 99.2 1.4E-11 3E-16 145.7 8.6 323 118-537 522-865 (889)
25 KOG0532 Leucine-rich repeat (L 99.0 1E-10 2.2E-15 124.6 0.3 191 291-509 78-271 (722)
26 COG4886 Leucine-rich repeat (L 98.9 1.2E-09 2.5E-14 121.3 7.4 180 333-515 114-294 (394)
27 KOG0532 Leucine-rich repeat (L 98.9 7E-11 1.5E-15 125.8 -3.4 186 339-529 79-270 (722)
28 KOG3207 Beta-tubulin folding c 98.9 6.8E-10 1.5E-14 115.1 2.9 180 332-511 143-339 (505)
29 COG4886 Leucine-rich repeat (L 98.9 2.9E-09 6.3E-14 118.1 8.0 185 309-497 114-299 (394)
30 KOG3207 Beta-tubulin folding c 98.8 7.5E-10 1.6E-14 114.8 1.3 199 290-488 123-339 (505)
31 KOG1259 Nischarin, modulator o 98.8 1.8E-09 3.9E-14 106.3 2.3 178 328-509 207-385 (490)
32 KOG1259 Nischarin, modulator o 98.7 2.6E-09 5.7E-14 105.2 0.1 125 359-509 284-410 (490)
33 PRK15386 type III secretion pr 98.7 5.4E-08 1.2E-12 103.6 8.5 57 355-416 48-104 (426)
34 PF14580 LRR_9: Leucine-rich r 98.6 1.3E-08 2.8E-13 96.9 2.0 125 117-252 17-148 (175)
35 KOG1909 Ran GTPase-activating 98.6 7.4E-09 1.6E-13 104.8 0.3 176 334-509 91-309 (382)
36 KOG1909 Ran GTPase-activating 98.6 1E-08 2.2E-13 103.8 -0.2 107 288-394 185-310 (382)
37 PF14580 LRR_9: Leucine-rich r 98.5 6.7E-08 1.4E-12 92.0 4.6 105 406-512 19-127 (175)
38 PLN03150 hypothetical protein; 98.3 1.1E-06 2.5E-11 102.2 8.6 107 175-281 419-529 (623)
39 PLN03150 hypothetical protein; 98.3 2.4E-06 5.3E-11 99.5 9.5 106 312-417 419-526 (623)
40 PF13855 LRR_8: Leucine rich r 98.2 1E-06 2.2E-11 68.7 3.3 58 452-509 1-60 (61)
41 KOG2120 SCF ubiquitin ligase, 98.2 6.7E-08 1.5E-12 95.5 -4.2 62 289-350 186-249 (419)
42 PF13855 LRR_8: Leucine rich r 98.2 1.6E-06 3.4E-11 67.6 4.0 56 153-208 2-60 (61)
43 KOG2120 SCF ubiquitin ligase, 98.2 4E-08 8.8E-13 97.1 -6.6 157 175-348 186-351 (419)
44 PRK15386 type III secretion pr 98.1 1.7E-05 3.7E-10 84.8 10.3 57 307-369 48-104 (426)
45 KOG0531 Protein phosphatase 1, 98.1 5.4E-07 1.2E-11 100.2 -1.3 166 153-322 96-266 (414)
46 KOG0531 Protein phosphatase 1, 98.0 1.3E-06 2.7E-11 97.3 0.6 122 295-421 79-201 (414)
47 KOG4341 F-box protein containi 98.0 3.6E-07 7.8E-12 94.8 -4.7 15 380-394 318-332 (483)
48 KOG4341 F-box protein containi 97.9 2.5E-07 5.4E-12 95.9 -6.2 88 309-396 292-386 (483)
49 KOG2982 Uncharacterized conser 97.8 5.3E-06 1.1E-10 82.4 1.0 67 450-516 197-267 (418)
50 KOG1859 Leucine-rich repeat pr 97.8 1E-06 2.2E-11 97.2 -4.5 196 308-509 81-290 (1096)
51 PF12799 LRR_4: Leucine Rich r 97.8 2.5E-05 5.4E-10 55.8 3.5 40 452-491 1-40 (44)
52 KOG1859 Leucine-rich repeat pr 97.7 1.5E-06 3.2E-11 95.9 -4.9 181 304-491 102-295 (1096)
53 KOG2982 Uncharacterized conser 97.7 1.3E-05 2.7E-10 79.8 1.1 83 172-254 69-156 (418)
54 PF12799 LRR_4: Leucine Rich r 97.6 5.5E-05 1.2E-09 54.0 2.7 35 175-209 2-36 (44)
55 KOG3665 ZYG-1-like serine/thre 97.5 1.6E-05 3.4E-10 92.4 -0.5 128 244-372 122-263 (699)
56 KOG4579 Leucine-rich repeat (L 97.5 8.9E-06 1.9E-10 71.7 -2.2 102 408-509 29-134 (177)
57 KOG3665 ZYG-1-like serine/thre 97.5 5.5E-05 1.2E-09 88.0 2.9 149 359-508 122-285 (699)
58 COG5238 RNA1 Ran GTPase-activa 97.3 6.2E-05 1.4E-09 74.0 0.4 142 191-348 86-255 (388)
59 KOG1644 U2-associated snRNP A' 97.0 0.0014 3E-08 62.2 6.1 107 147-253 37-149 (233)
60 KOG1644 U2-associated snRNP A' 97.0 0.0012 2.6E-08 62.7 5.6 122 155-278 22-151 (233)
61 COG5238 RNA1 Ran GTPase-activa 97.0 0.00022 4.7E-09 70.3 0.7 87 307-393 26-131 (388)
62 KOG4579 Leucine-rich repeat (L 96.8 0.00014 2.9E-09 64.4 -2.0 64 358-422 52-116 (177)
63 KOG2739 Leucine-rich acidic nu 96.5 0.0021 4.5E-08 63.7 3.7 106 430-537 44-161 (260)
64 KOG1947 Leucine rich repeat pr 96.2 0.0011 2.3E-08 75.8 -0.3 17 448-464 358-374 (482)
65 KOG1947 Leucine rich repeat pr 95.9 0.0015 3.3E-08 74.5 -1.0 110 309-418 186-307 (482)
66 KOG2739 Leucine-rich acidic nu 95.7 0.0048 1E-07 61.2 1.5 101 153-253 44-152 (260)
67 KOG2123 Uncharacterized conser 95.4 0.0019 4.2E-08 64.1 -2.1 99 310-412 18-123 (388)
68 PF13306 LRR_5: Leucine rich r 95.2 0.097 2.1E-06 47.4 8.6 105 110-229 3-112 (129)
69 KOG2123 Uncharacterized conser 94.7 0.0019 4.2E-08 64.1 -4.6 84 118-212 18-103 (388)
70 PF00560 LRR_1: Leucine Rich R 94.0 0.027 5.8E-07 33.4 1.0 19 176-194 2-20 (22)
71 PF00560 LRR_1: Leucine Rich R 93.8 0.025 5.5E-07 33.5 0.7 17 477-493 2-18 (22)
72 PF13504 LRR_7: Leucine rich r 92.5 0.088 1.9E-06 28.9 1.5 15 453-467 2-16 (17)
73 PF13504 LRR_7: Leucine rich r 92.3 0.086 1.9E-06 29.0 1.3 16 476-491 2-17 (17)
74 PF13306 LRR_5: Leucine rich r 90.6 0.86 1.9E-05 41.1 7.1 94 153-253 13-112 (129)
75 PF07725 LRR_3: Leucine Rich R 89.6 0.23 5E-06 28.4 1.4 20 175-194 1-20 (20)
76 KOG4308 LRR-containing protein 87.9 0.015 3.2E-07 65.1 -8.1 38 382-419 144-185 (478)
77 smart00370 LRR Leucine-rich re 85.8 0.68 1.5E-05 28.5 2.1 21 474-494 1-21 (26)
78 smart00369 LRR_TYP Leucine-ric 85.8 0.68 1.5E-05 28.5 2.1 21 474-494 1-21 (26)
79 smart00370 LRR Leucine-rich re 81.8 0.87 1.9E-05 28.0 1.3 19 174-192 2-20 (26)
80 smart00369 LRR_TYP Leucine-ric 81.8 0.87 1.9E-05 28.0 1.3 19 174-192 2-20 (26)
81 KOG0473 Leucine-rich repeat pr 81.7 0.061 1.3E-06 52.4 -5.8 85 116-210 39-124 (326)
82 KOG4308 LRR-containing protein 79.9 0.024 5.2E-07 63.5 -10.8 69 304-372 108-185 (478)
83 KOG3864 Uncharacterized conser 78.7 0.29 6.2E-06 47.0 -2.3 37 197-233 101-138 (221)
84 KOG0473 Leucine-rich repeat pr 78.6 0.043 9.2E-07 53.4 -7.9 84 431-514 44-127 (326)
85 smart00364 LRR_BAC Leucine-ric 73.5 2.3 5.1E-05 26.2 1.4 17 153-169 3-19 (26)
86 KOG3864 Uncharacterized conser 66.3 2.2 4.7E-05 41.2 0.4 37 312-348 102-138 (221)
87 smart00365 LRR_SD22 Leucine-ri 59.8 6.5 0.00014 24.3 1.5 16 174-189 2-17 (26)
88 PF13516 LRR_6: Leucine Rich r 53.4 6.7 0.00014 23.5 0.8 12 453-464 3-14 (24)
89 smart00367 LRR_CC Leucine-rich 52.8 8.9 0.00019 23.5 1.3 14 498-511 2-15 (26)
90 smart00368 LRR_RI Leucine rich 31.6 34 0.00074 21.4 1.6 14 475-488 2-15 (28)
91 KOG4242 Predicted myosin-I-bin 28.7 2.2E+02 0.0048 31.6 7.8 36 453-488 414-453 (553)
92 KOG3763 mRNA export factor TAP 20.8 45 0.00098 37.5 1.0 62 450-512 216-284 (585)
93 KOG3763 mRNA export factor TAP 20.5 74 0.0016 35.9 2.6 34 288-321 218-254 (585)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.2e-71 Score=681.32 Aligned_cols=644 Identities=31% Similarity=0.493 Sum_probs=483.2
Q ss_pred CEeEEeeecCCCChhHHHHhhcCCCc-hhhcHHhhhcCccEEEccCCeEEecHHHHHHHHHHHHhcccCCCCCcccccch
Q 003496 1 MFLDIACFLKGEDKDYVTKIQDDPNF-AHYCLSVLVDKSLVTISCNNKVQMHDLLQKMGREIVRQESVKEPGKRSRLWHY 79 (815)
Q Consensus 1 iFl~~a~F~~~~~~~~l~~lw~a~gf-~~~~i~~L~~rsli~~~~~~~~~MHDLl~d~a~~i~~~e~~~~~~~~~~l~~~ 79 (815)
+|+||||||+|++++++..++.++|+ ++.|++.|++||||++. +++++||||+||||++|+++++ .+|++|+|+|++
T Consensus 441 ~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~ 518 (1153)
T PLN03210 441 IFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDA 518 (1153)
T ss_pred hhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCH
Confidence 69999999999999999999999999 99999999999999998 7899999999999999999998 799999999999
Q ss_pred hHHHHHHhhCccccceeEEEecCCCCcceeeccccccccCCceEEEEeCCCCCCccccCcccccCCCCCCCCcCcceEEe
Q 003496 80 EDVYHVLKKNKGTDAIEGILLNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHW 159 (815)
Q Consensus 80 ~di~~vl~~~~~~~~v~~i~l~~~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l 159 (815)
+||++|+.+++|++++++|+++.+...+..+...+|.+|++|++|+++.+.+.. .......+|.++..+|.+||+|+|
T Consensus 519 ~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~--~~~~~~~lp~~~~~lp~~Lr~L~~ 596 (1153)
T PLN03210 519 KDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQ--KKEVRWHLPEGFDYLPPKLRLLRW 596 (1153)
T ss_pred HHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccc--cccceeecCcchhhcCcccEEEEe
Confidence 999999999999999999999999999999999999999999999998765421 122446789999999999999999
Q ss_pred CCCCCCCCCCCCCCccceeeecCCCCcccccccccCCCCccEEecCCCCCCCcCCCCCCCCCCcEEecCCCCCCCCcccc
Q 003496 160 HQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCTNLPYISSS 239 (815)
Q Consensus 160 ~~~~l~~lp~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~ 239 (815)
.+|+++.+|..|.+.+|++|+|+++.++.+|.++..+++|+.|+|+++..+..+|+++.+++|+.|++++|..+..+|.+
T Consensus 597 ~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~s 676 (1153)
T PLN03210 597 DKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSS 676 (1153)
T ss_pred cCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchh
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred cCCCCcccEEecCCCCCCcccCCcccCCCCcEEEecCCCCCCccCCCcccceEEEecCccccccchhhhccCCCCEEecc
Q 003496 240 IQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLS 319 (815)
Q Consensus 240 l~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~ 319 (815)
++++++|+.|++++|..++.+|..+.+++|+.|++++|..+..+|....+++.|++.++.+..+|..+ .+++|+.|.+.
T Consensus 677 i~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~ 755 (1153)
T PLN03210 677 IQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL-RLENLDELILC 755 (1153)
T ss_pred hhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc-ccccccccccc
Confidence 99999999999999999999999888999999999999999999998899999999999999998776 57888888887
Q ss_pred CCcCccccccccCCCCCCCEEeeCCCcCCCCccHHHhccccCCEEeccCC-CccccCchhccCCCCcEEecCCCCCCCcc
Q 003496 320 FCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRET-AIRNLPSSIEYLEGLRKLDLGDCSELASL 398 (815)
Q Consensus 320 ~~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~-~l~~lp~~l~~l~~L~~L~L~~~~~~~~l 398 (815)
++.... +...+..+ .+......++|+.|++++| .+.++|.+++++++|+.|++++|..++.+
T Consensus 756 ~~~~~~-l~~~~~~l----------------~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L 818 (1153)
T PLN03210 756 EMKSEK-LWERVQPL----------------TPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL 818 (1153)
T ss_pred ccchhh-cccccccc----------------chhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee
Confidence 654211 11111100 0111222356666666666 34467777777777888888777766655
Q ss_pred chhhhccccccccccccccCCCCCchhhhhcccceEEecCCCCccCCcccCCCCCCCEEEecCCCC-cccCcccCCCCCC
Q 003496 399 PEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNI-TEIPADIGSLSSI 477 (815)
Q Consensus 399 ~~~l~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~~~l-~~lp~~l~~l~~L 477 (815)
|..+ ++ ++|+.|++++|.. ..+|.. .++|
T Consensus 819 P~~~-~L----------------------------------------------~sL~~L~Ls~c~~L~~~p~~---~~nL 848 (1153)
T PLN03210 819 PTGI-NL----------------------------------------------ESLESLDLSGCSRLRTFPDI---STNI 848 (1153)
T ss_pred CCCC-Cc----------------------------------------------cccCEEECCCCCcccccccc---cccc
Confidence 5422 22 3344444444421 112221 2456
Q ss_pred CeeeccCCcCccCchhhhccCCcceecccccccccCCCCcc---cccceeccccccccCCCCC--CCCchhhhhhhhhhh
Q 003496 478 VWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPELP---IYLVYLEAKNCKRLQTLPE--IPSSVEELDASMLES 552 (815)
Q Consensus 478 ~~L~Ls~n~l~~lp~~l~~l~~L~~L~l~~c~~L~~lp~l~---~sL~~L~i~~C~~L~~l~~--~p~~l~~L~~~~~~~ 552 (815)
+.|+|++|.++.+|.++..+++|+.|++++|+.++.+|..+ .+|+.|++.+|++|+.++. .|.....+ .
T Consensus 849 ~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~--~---- 922 (1153)
T PLN03210 849 SDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMA--T---- 922 (1153)
T ss_pred CEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhh--c----
Confidence 66666666666666666667777777777777777666533 3455566677777765542 22211111 0
Q ss_pred hhccCCCcccccceeccccccccchhhhhhhhhhhhHHHHHHhhcccccccccceeccCCceeEecCCCCCCCccccCCC
Q 003496 553 IYEHSSGIMDGILFFDFTNCLKLNEKEAHKKILADSQQRIQHMASASLRLCYEMVHYTPYGLCNCFPGSEIPDWFSNQCS 632 (815)
Q Consensus 553 l~~~~~~~~~~~~~l~~~nC~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pg~~iP~Wf~~~~~ 632 (815)
.......+....+.|.||++|++... ++.. .. ...+++||.++|+||.||+.
T Consensus 923 --~n~~~~~p~~~~l~f~nC~~L~~~a~--------------l~~~---~~---------~~~~~l~g~evp~~f~hr~~ 974 (1153)
T PLN03210 923 --DNIHSKLPSTVCINFINCFNLDQEAL--------------LQQQ---SI---------FKQLILSGEEVPSYFTHRTT 974 (1153)
T ss_pred --ccccccCCchhccccccccCCCchhh--------------hccc---cc---------ceEEECCCccCchhccCCcc
Confidence 00001122235578999999976211 0000 00 12357999999999999999
Q ss_pred CcEEE-EEcCCCCCCCceeeEEEEEEEeecCccccCCCeeeeEEEEEecCcccc-cC--CccccccccccCCCCCCCCcE
Q 003496 633 GSSLT-IQLPRRSCGRNLVGFALCAVIQFEEDIDASGKYCNVKCNYNFETKTRL-EA--NNNVDDYYNLSLNGSMDSDHV 708 (815)
Q Consensus 633 g~s~~-i~lp~~~~~~~~~gf~~c~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~sdH~ 708 (815)
|++++ |.+|+.|+...+.||++|+|+++...... ...+.++|.|+|++..+. .. ...+.|.+ ....+|+
T Consensus 975 g~sl~~i~l~~~~~~~~~~~f~~c~v~~~~~~~~~-~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~------~~~~~~l 1047 (1153)
T PLN03210 975 GASLTNIPLLHISPCQPFFRFRACAVVDSESFFII-SVSFDIQVCCRFIDRLGNHFDSPYQPHVFSV------TKKGSHL 1047 (1153)
T ss_pred cceeeeeccCCcccCCCccceEEEEEEecCccccC-CCceeEEEEEEEECCCCCccccCCCceeEee------eccccce
Confidence 99999 99999999888999999999998765332 236788999999874321 00 00011111 1234555
Q ss_pred EEecccCCCCCCC---CCCCCceeeEEEEEEecCCCCccEEEeccCeeeecCCC
Q 003496 709 LLGFEPCWNTEVP---DDGNNQTTISFEFSVECKNEKCHQVKCCGVCPVYANPN 759 (815)
Q Consensus 709 ~~~~~~~~~~~~~---~~~~~~~~~~~~f~~~~~~~~~~~Vk~CGv~lvy~~~~ 759 (815)
++.-..+ ..... ....+++.++|+|.|...... ++||+|||+++|+.+.
T Consensus 1048 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~~~~~cg~~~~~~~~~ 1099 (1153)
T PLN03210 1048 VIFDCCF-PLNEDNAPLAELNYDHVDIQFRLTNKNSQ-LKLKGCGIRLSEDDSS 1099 (1153)
T ss_pred EEecccc-cccccccchhccCCceeeEEEEEecCCCC-eEEEeeeEEEeccCCC
Confidence 5211111 10010 112356778899998775544 4999999999997754
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1e-38 Score=394.04 Aligned_cols=462 Identities=20% Similarity=0.213 Sum_probs=347.1
Q ss_pred HHHHHHHHhcccCCCCCcccccchh-HHHH---HHhhCccccceeEEEecCCCCcceeeccccccccCCceEEEEeCCCC
Q 003496 56 KMGREIVRQESVKEPGKRSRLWHYE-DVYH---VLKKNKGTDAIEGILLNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEY 131 (815)
Q Consensus 56 d~a~~i~~~e~~~~~~~~~~l~~~~-di~~---vl~~~~~~~~v~~i~l~~~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l 131 (815)
|.+.-.+-++.+.+|+++.+.|+.. +.|. |.+.+ ..+|+.+.+....+.. ..+.+|.++++|++|++++|.+
T Consensus 30 ~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~--~~~v~~L~L~~~~i~~--~~~~~~~~l~~L~~L~Ls~n~~ 105 (968)
T PLN00113 30 ELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN--SSRVVSIDLSGKNISG--KISSAIFRLPYIQTINLSNNQL 105 (968)
T ss_pred HHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC--CCcEEEEEecCCCccc--cCChHHhCCCCCCEEECCCCcc
Confidence 3333344445556788888899754 4442 33433 3468877777665532 2356899999999999999987
Q ss_pred CCccccCcccccCCCCC-CCCcCcceEEeCCCCCCCCCCCCCCccceeeecCCCCccc-ccccccCCCCccEEecCCCCC
Q 003496 132 KGVPIMSSKVHLDQGLR-YLPEELRYLHWHQYSLKTLPLNFDPENLIELNLPYSNVEQ-IWEGKKQAFKLKFIDLHHSQY 209 (815)
Q Consensus 132 ~~~~~~~~~~~l~~~l~-~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~-lp~~~~~l~~L~~L~L~~~~~ 209 (815)
.| .+|..+. .+ .+||+|++++|.+........+++|++|+|++|.+.. +|..++.+++|++|+|++|.+
T Consensus 106 ~~--------~ip~~~~~~l-~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l 176 (968)
T PLN00113 106 SG--------PIPDDIFTTS-SSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL 176 (968)
T ss_pred CC--------cCChHHhccC-CCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc
Confidence 53 6787766 45 4999999999988743333468899999999999874 788899999999999999988
Q ss_pred CCcCC-CCCCCCCCcEEecCCCCCCCCcccccCCCCcccEEecCCCCCCcccCCccc-CCCCcEEEecCCCCCCccCCCc
Q 003496 210 LTKIP-DLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIY-FRSPIAVDFSDCVNLTEFPLVS 287 (815)
Q Consensus 210 ~~~~p-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~-l~~L~~L~l~~~~~l~~l~~~~ 287 (815)
...+| .++++++|++|++++|.....+|..++++++|++|++++|.....+|..+. +++|+.|++++|.....+|..+
T Consensus 177 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 256 (968)
T PLN00113 177 VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL 256 (968)
T ss_pred cccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH
Confidence 77777 588899999999999888888899999999999999999888778887776 8999999999988777777654
Q ss_pred ---ccceEEEecCcccc-ccchhhhccCCCCEEeccCCcCccccccccCCCCCCCEEeeCCCcCCCCccHHHhccccCCE
Q 003496 288 ---GNIIELRLWNTRIE-EVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLE 363 (815)
Q Consensus 288 ---~~L~~L~l~~~~i~-~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~ 363 (815)
.+|+.|++++|.+. .+|..+..+++|+.|++++|.+.+.+|..+.++++|+.|++++|...+.+|..+..+++|+.
T Consensus 257 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 336 (968)
T PLN00113 257 GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV 336 (968)
T ss_pred hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCE
Confidence 45688889888886 67888888999999999998888888888888899999999988888888888888889999
Q ss_pred EeccCCCcc-ccCchhccCCCCcEEecCCCCCCCccchhhhccccccccccccccCCCC-CchhhhhcccceEEecCCCC
Q 003496 364 IDLRETAIR-NLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQL-PSSISDLNQLKKLKFSGCRG 441 (815)
Q Consensus 364 L~L~~~~l~-~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~ 441 (815)
|++++|.+. .+|..++.+++|+.|++++|...+.+|..+..+++|+.|++++|.+.+. |..+..+++|+.|.+++|..
T Consensus 337 L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l 416 (968)
T PLN00113 337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF 416 (968)
T ss_pred EECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEe
Confidence 999888887 6788888888888888888888777788777778888888887777644 77777777788887777764
Q ss_pred c-cCCcccCCCCCCCEEEecCCCCcc-cCcccCCCCCCCeeeccCCcCc-cCchhhhccCCcceecccccccccCCCCc-
Q 003496 442 L-VLPPLLSGLSSLTELHLTDCNITE-IPADIGSLSSIVWLALSGNHFE-RLPTSVKQLSQLRYLHLSNCNMLQSLPEL- 517 (815)
Q Consensus 442 ~-~lp~~l~~l~~L~~L~Ls~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~l~~c~~L~~lp~l- 517 (815)
. .+|..+..+++|+.|++++|.++. +|..+..+++|+.|++++|.+. .+|.. ...++|+.|++++|+....+|..
T Consensus 417 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~~~L~~L~ls~n~l~~~~~~~~ 495 (968)
T PLN00113 417 SGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFSGAVPRKL 495 (968)
T ss_pred eeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcc-cccccceEEECcCCccCCccChhh
Confidence 3 456666677777777777777665 4555556666666666666554 34432 23455566666665555555432
Q ss_pred --ccccceeccccccc
Q 003496 518 --PIYLVYLEAKNCKR 531 (815)
Q Consensus 518 --~~sL~~L~i~~C~~ 531 (815)
.++|+.|++.+|.-
T Consensus 496 ~~l~~L~~L~Ls~N~l 511 (968)
T PLN00113 496 GSLSELMQLKLSENKL 511 (968)
T ss_pred hhhhccCEEECcCCcc
Confidence 23455555555533
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-37 Score=384.98 Aligned_cols=441 Identities=23% Similarity=0.304 Sum_probs=230.4
Q ss_pred ceeEEEecCCCCcceeeccccccccCCceEEEEeCCCCCCcccc--------------CcccccCCCCCCCCcCcceEEe
Q 003496 94 AIEGILLNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIM--------------SSKVHLDQGLRYLPEELRYLHW 159 (815)
Q Consensus 94 ~v~~i~l~~~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~--------------~~~~~l~~~l~~l~~~Lr~L~l 159 (815)
.++.+.+..+.+ ...+....|.++++||+|++++|.+.+.... .....+|..+..++ +||+|++
T Consensus 94 ~L~~L~Ls~n~~-~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~-~L~~L~L 171 (968)
T PLN00113 94 YIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFS-SLKVLDL 171 (968)
T ss_pred CCCEEECCCCcc-CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCC-CCCEEEC
Confidence 444444443333 1234444555666666666666655421000 00113444444444 5555555
Q ss_pred CCCCCC-CCCCCC-CCccceeeecCCCCccc-ccccccCCCCccEEecCCCCCCCcCC-CCCCCCCCcEEecCCCCCCCC
Q 003496 160 HQYSLK-TLPLNF-DPENLIELNLPYSNVEQ-IWEGKKQAFKLKFIDLHHSQYLTKIP-DLVETPNLERINLLNCTNLPY 235 (815)
Q Consensus 160 ~~~~l~-~lp~~~-~l~~L~~L~L~~~~i~~-lp~~~~~l~~L~~L~L~~~~~~~~~p-~l~~l~~L~~L~L~~~~~~~~ 235 (815)
++|.+. .+|..+ ++++|++|+|++|.+.. +|..+.++++|++|+|++|.+...+| .++.+++|++|++++|...+.
T Consensus 172 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 251 (968)
T PLN00113 172 GGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP 251 (968)
T ss_pred ccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccc
Confidence 555543 445544 55555555555555543 45555555555555555555554444 355555555555555555555
Q ss_pred cccccCCCCcccEEecCCCCCCcccCCccc-CCCCcEEEecCCCCCCccCCCc---ccceEEEecCcccc-ccchhhhcc
Q 003496 236 ISSSIQNFNNLSVLSLAGCRSLVSFPRNIY-FRSPIAVDFSDCVNLTEFPLVS---GNIIELRLWNTRIE-EVPSSIECL 310 (815)
Q Consensus 236 ~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~-l~~L~~L~l~~~~~l~~l~~~~---~~L~~L~l~~~~i~-~lp~~l~~l 310 (815)
+|..++++++|++|++++|.....+|..+. +++|+.|++++|.....+|..+ .+++.|++++|.+. .+|..+..+
T Consensus 252 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 331 (968)
T PLN00113 252 IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL 331 (968)
T ss_pred cChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcC
Confidence 555555555555555555554444554444 5555556655555444444322 34455555555554 445555555
Q ss_pred CCCCEEeccCCcCccccccccCCCCCCCEEeeCCCcCCCCccHHHhccccCCEEeccCCCcc-ccCchhccCCCCcEEec
Q 003496 311 TNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIR-NLPSSIEYLEGLRKLDL 389 (815)
Q Consensus 311 ~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~L 389 (815)
++|+.|++++|.+.+.+|..++.+++|+.|++++|...+.+|..+..+++|+.|++.+|.+. .+|..+..+++|+.|++
T Consensus 332 ~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L 411 (968)
T PLN00113 332 PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRL 411 (968)
T ss_pred CCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEEC
Confidence 55555555555555555555555555555555555555555555555555555555555444 44555555666666666
Q ss_pred CCCCCCCccchhhhccccccccccccccCCCC-CchhhhhcccceEEecCCCCc------------------------cC
Q 003496 390 GDCSELASLPEKLENLKSLKYLNAEFSAIGQL-PSSISDLNQLKKLKFSGCRGL------------------------VL 444 (815)
Q Consensus 390 ~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~------------------------~l 444 (815)
++|...+.+|..+..+++|+.|++++|.+.+. |..+..+++|+.|++++|... ..
T Consensus 412 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~ 491 (968)
T PLN00113 412 QDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAV 491 (968)
T ss_pred cCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCcc
Confidence 66665555666666666666666666655544 344444555555555544432 23
Q ss_pred CcccCCCCCCCEEEecCCCCcc-cCcccCCCCCCCeeeccCCcCc-cCchhhhccCCcceecccccccccCCCCc---cc
Q 003496 445 PPLLSGLSSLTELHLTDCNITE-IPADIGSLSSIVWLALSGNHFE-RLPTSVKQLSQLRYLHLSNCNMLQSLPEL---PI 519 (815)
Q Consensus 445 p~~l~~l~~L~~L~Ls~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~l~~c~~L~~lp~l---~~ 519 (815)
|..+..+++|+.|+|++|.+.. +|..+..+++|++|+|++|.++ .+|..+..+++|+.|++++|+....+|.. ..
T Consensus 492 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 571 (968)
T PLN00113 492 PRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVE 571 (968)
T ss_pred ChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCc
Confidence 3344445555555555555543 4445555555555555555554 44555555555555555555555555532 23
Q ss_pred ccceeccccccccCCCC
Q 003496 520 YLVYLEAKNCKRLQTLP 536 (815)
Q Consensus 520 sL~~L~i~~C~~L~~l~ 536 (815)
+|+.|++++|+-...+|
T Consensus 572 ~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 572 SLVQVNISHNHLHGSLP 588 (968)
T ss_pred ccCEEeccCCcceeeCC
Confidence 34555555554443333
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.3e-31 Score=281.74 Aligned_cols=368 Identities=20% Similarity=0.322 Sum_probs=303.0
Q ss_pred cCCceEEEEeCCCCCCccccCcccccCCCCCCCCcCcceEEeCCCCCCCCCCCC-CCccceeeecCCCCcccccccccCC
Q 003496 118 MSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNF-DPENLIELNLPYSNVEQIWEGKKQA 196 (815)
Q Consensus 118 ~~~Lr~L~l~~~~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~lp~~~~~l 196 (815)
++-.|-.++++|.++| ..+|.++..+. .+++|.+....+..+|... .+.+|++|.+++|++..+-..+..|
T Consensus 6 LpFVrGvDfsgNDFsg-------~~FP~~v~qMt-~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~L 77 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSG-------DRFPHDVEQMT-QMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDL 77 (1255)
T ss_pred cceeecccccCCcCCC-------CcCchhHHHhh-heeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccc
Confidence 3445666777787764 57888888876 8888888888888888888 8888888999999888888888888
Q ss_pred CCccEEecCCCCCCCc-CC-CCCCCCCCcEEecCCCCCCCCcccccCCCCcccEEecCCCCCCcccCCcccCCCCcEEEe
Q 003496 197 FKLKFIDLHHSQYLTK-IP-DLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDF 274 (815)
Q Consensus 197 ~~L~~L~L~~~~~~~~-~p-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l 274 (815)
+.||.+++..|.+... +| ++.++..|..|+|++|. +.++|..+.+.+++-.|+|++|+ +..+|..+.
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lf--------- 146 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-IETIPNSLF--------- 146 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCc-cccCCchHH---------
Confidence 8899888888876533 45 78888888888888865 67788888888888888888754 455554432
Q ss_pred cCCCCCCccCCCcccceEEEecCccccccchhhhccCCCCEEeccCCcCccccccccCCCCCCCEEeeCCCcC-CCCccH
Q 003496 275 SDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSN-LETFPE 353 (815)
Q Consensus 275 ~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~Ls~~~~-~~~~p~ 353 (815)
.....|-.|+|++|++..+|..+..+.+|++|+|++|.+...--..+..+++|++|.+++.+. +..+|.
T Consensus 147 ----------inLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt 216 (1255)
T KOG0444|consen 147 ----------INLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT 216 (1255)
T ss_pred ----------HhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC
Confidence 011233456677788888999999999999999999986544333444678888999988655 467899
Q ss_pred HHhccccCCEEeccCCCccccCchhccCCCCcEEecCCCCCCCccchhhhccccccccccccccCCCCCchhhhhcccce
Q 003496 354 ILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKK 433 (815)
Q Consensus 354 ~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~ 433 (815)
.+..+.+|..++++.|.+..+|..+..+++|+.|+|++|... .+........+|+.|+++.|.++.+|+.+-.++.|+.
T Consensus 217 sld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~k 295 (1255)
T KOG0444|consen 217 SLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTK 295 (1255)
T ss_pred chhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhccchHHHhhhHHHHH
Confidence 999999999999999999999999999999999999998754 4444566778899999999999999999999999999
Q ss_pred EEecCCCC--ccCCcccCCCCCCCEEEecCCCCcccCcccCCCCCCCeeeccCCcCccCchhhhccCCcceecccccccc
Q 003496 434 LKFSGCRG--LVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNML 511 (815)
Q Consensus 434 L~l~~~~~--~~lp~~l~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~l~~c~~L 511 (815)
|...+|.. .-+|+.++.+..|+.+..++|.+.-+|+++..+..|+.|.|+.|.+.++|+.|+-++-|+.||+..|+.|
T Consensus 296 Ly~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 296 LYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred HHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCc
Confidence 99988873 4689999999999999999999988999999999999999999999999999999999999999999998
Q ss_pred cCCC
Q 003496 512 QSLP 515 (815)
Q Consensus 512 ~~lp 515 (815)
.--|
T Consensus 376 VMPP 379 (1255)
T KOG0444|consen 376 VMPP 379 (1255)
T ss_pred cCCC
Confidence 7544
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.6e-31 Score=281.20 Aligned_cols=361 Identities=27% Similarity=0.349 Sum_probs=316.6
Q ss_pred CcceEEeCCCCCC--CCCCCC-CCccceeeecCCCCcccccccccCCCCccEEecCCCCCCCcCCCCCCCCCCcEEecCC
Q 003496 153 ELRYLHWHQYSLK--TLPLNF-DPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLN 229 (815)
Q Consensus 153 ~Lr~L~l~~~~l~--~lp~~~-~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~ 229 (815)
-.|-.++++|.++ .+|.+. .+++++.|.|..+++..+|+.++.+.+|++|.+++|++.+....++.++.||.+.+..
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~ 87 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRD 87 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhc
Confidence 7788899999887 899999 9999999999999999999999999999999999999877777899999999999988
Q ss_pred CCCC-CCcccccCCCCcccEEecCCCCCCcccCCcccCCCCcEEEecCCCCCCccCCCcccceEEEecCccccccchh-h
Q 003496 230 CTNL-PYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSS-I 307 (815)
Q Consensus 230 ~~~~-~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp~~-l 307 (815)
|..- .-+|..|..+..|..|+|+.|+ ++..|.++. .-.++..|.|++|.|..+|.. +
T Consensus 88 N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE--------------------~AKn~iVLNLS~N~IetIPn~lf 146 (1255)
T KOG0444|consen 88 NNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLE--------------------YAKNSIVLNLSYNNIETIPNSLF 146 (1255)
T ss_pred cccccCCCCchhcccccceeeecchhh-hhhcchhhh--------------------hhcCcEEEEcccCccccCCchHH
Confidence 7543 5688899999999999999865 455554432 223557788888899999987 4
Q ss_pred hccCCCCEEeccCCcCccccccccCCCCCCCEEeeCCCcCCCCccHHHhccccCCEEeccCCCcc--ccCchhccCCCCc
Q 003496 308 ECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIR--NLPSSIEYLEGLR 385 (815)
Q Consensus 308 ~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~l~--~lp~~l~~l~~L~ 385 (815)
.+++.|-.|||++|. +..+|+.+..|.+|++|.|++|+....--..+..|++|++|.+++++-+ .+|.++..+.+|.
T Consensus 147 inLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~ 225 (1255)
T KOG0444|consen 147 INLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLR 225 (1255)
T ss_pred HhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhh
Confidence 789999999999876 5788999999999999999999875433344556889999999998655 8999999999999
Q ss_pred EEecCCCCCCCccchhhhccccccccccccccCCCCCchhhhhcccceEEecCCCCccCCcccCCCCCCCEEEecCCCCc
Q 003496 386 KLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNIT 465 (815)
Q Consensus 386 ~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~~~l~ 465 (815)
.++++.| .+..+|+.+.++++|+.|++++|.++++....+...+|+.|+++.|+...+|..+..++.|+.|.+.+|+++
T Consensus 226 dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 226 DVDLSEN-NLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred hcccccc-CCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCccc
Confidence 9999876 467889999999999999999999999988888899999999999999999999999999999999999887
Q ss_pred c--cCcccCCCCCCCeeeccCCcCccCchhhhccCCcceecccccccccCCCC---cccccceeccccccccCCCCC
Q 003496 466 E--IPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPE---LPIYLVYLEAKNCKRLQTLPE 537 (815)
Q Consensus 466 ~--lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~l~~c~~L~~lp~---l~~sL~~L~i~~C~~L~~l~~ 537 (815)
- +|+.++.+..|+.+..++|.+.-+|+++..+.+|+.|.+++|+ |..+|+ +.+-|+.|++.+.|+|..-|.
T Consensus 305 FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 305 FEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred ccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccc-eeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 4 9999999999999999999999999999999999999999876 667887 457788999999999877664
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.95 E-value=2.4e-31 Score=267.40 Aligned_cols=383 Identities=19% Similarity=0.275 Sum_probs=268.7
Q ss_pred ccccccCCceEEEEeCCCCCCccccCcccccCCCCCCCCcCcceEEeCCCCCCCCCCCC-CCccceeeecCCCCcccccc
Q 003496 113 NVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNF-DPENLIELNLPYSNVEQIWE 191 (815)
Q Consensus 113 ~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~lp~ 191 (815)
.+.+++..++.|+.+.|++ ..+|..+..++ .|+.|+.+.+.++.+|+++ .+..|..|+..+|++..+|+
T Consensus 85 ~aig~l~~l~~l~vs~n~l---------s~lp~~i~s~~-~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~ 154 (565)
T KOG0472|consen 85 AAIGELEALKSLNVSHNKL---------SELPEQIGSLI-SLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPE 154 (565)
T ss_pred HHHHHHHHHHHhhcccchH---------hhccHHHhhhh-hhhhhhccccceeecCchHHHHhhhhhhhccccccccCch
Confidence 3556666666677766654 37888888887 8999999999999998888 88899999999999999999
Q ss_pred cccCCCCccEEecCCCCCCCcCCCCCCCCCCcEEecCCCCCCCCcccccCCCCcccEEecCCCCCCcccCCcccCCCCcE
Q 003496 192 GKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIA 271 (815)
Q Consensus 192 ~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~ 271 (815)
++..+.+|..+++.+|......|+.-.++.|++|+...| .++.+|+.++.+.+|..|++..|. +..+|+.-++..|.+
T Consensus 155 ~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lPef~gcs~L~E 232 (565)
T KOG0472|consen 155 DMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNK-IRFLPEFPGCSLLKE 232 (565)
T ss_pred HHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcc-cccCCCCCccHHHHH
Confidence 999999999999999987777777666889999998774 468899999999999999998865 667786556888888
Q ss_pred EEecCCCCCCccCC----CcccceEEEecCccccccchhhhccCCCCEEeccCCcCccccccccCCCCCCCEEeeCCCcC
Q 003496 272 VDFSDCVNLTEFPL----VSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSN 347 (815)
Q Consensus 272 L~l~~~~~l~~l~~----~~~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~Ls~~~~ 347 (815)
++++.+. ++.+|. ....+..|++.+|.++++|..+.-+.+|.+||+++|.+ ..+|.+++++ +|+.|-+.||+.
T Consensus 233 lh~g~N~-i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~i-s~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 233 LHVGENQ-IEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDI-SSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred HHhcccH-HHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcc-ccCCcccccc-eeeehhhcCCch
Confidence 8887765 333433 34567899999999999999999999999999998764 4678889988 899998887643
Q ss_pred CC-------------------------------------Ccc----HHHhccccCCEEeccCCCccccCchhccCCC---
Q 003496 348 LE-------------------------------------TFP----EILEKMEHLLEIDLRETAIRNLPSSIEYLEG--- 383 (815)
Q Consensus 348 ~~-------------------------------------~~p----~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~--- 383 (815)
-+ ..| .....+.+.+.|++++-.++.+|.....-..
T Consensus 310 rTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~ 389 (565)
T KOG0472|consen 310 RTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEI 389 (565)
T ss_pred HHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcc
Confidence 10 000 0122344556666666666655544322221
Q ss_pred CcEEecCCC-----------------------CCCCccchhhhccccccccccccccCCCCCchhhhhcccceEEecCCC
Q 003496 384 LRKLDLGDC-----------------------SELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCR 440 (815)
Q Consensus 384 L~~L~L~~~-----------------------~~~~~l~~~l~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~ 440 (815)
....+++.| +...-.|..++.+++|..|++++|.+..+|..++.+..|+.|+++.|+
T Consensus 390 Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~Nr 469 (565)
T KOG0472|consen 390 VTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNR 469 (565)
T ss_pred eEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccc
Confidence 444455444 333444445555555666666666555555555555556666666555
Q ss_pred CccCCcccCCCCCCCEEEecCCCCcccCcc-cCCCCCCCeeeccCCcCccCchhhhccCCcceeccccccc
Q 003496 441 GLVLPPLLSGLSSLTELHLTDCNITEIPAD-IGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNM 510 (815)
Q Consensus 441 ~~~lp~~l~~l~~L~~L~Ls~~~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~l~~c~~ 510 (815)
...+|..+-.+..|+.+-.+++++..+++. +.++..|..|||.+|.+..+|..++++++|++|++++|+.
T Consensus 470 Fr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 470 FRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred cccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCcc
Confidence 555555555555555555555566555443 6667777777777777777777777777777777777664
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=2.5e-27 Score=248.60 Aligned_cols=335 Identities=20% Similarity=0.200 Sum_probs=159.6
Q ss_pred eEEEEeCCCCCCccccCcccccCCCCCCCCcCcceEEeCCCCCCCCCCCC-CCccceeeecCCCCccccc-ccccCCCCc
Q 003496 122 RFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNF-DPENLIELNLPYSNVEQIW-EGKKQAFKL 199 (815)
Q Consensus 122 r~L~l~~~~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~lp-~~~~~l~~L 199 (815)
++|++++|.+.. .-+..+.++| +|+.+.+..|.++.+|... ...+|+.|+|.+|.|..+- +.++.++.|
T Consensus 81 ~~LdlsnNkl~~--------id~~~f~nl~-nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~al 151 (873)
T KOG4194|consen 81 QTLDLSNNKLSH--------IDFEFFYNLP-NLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPAL 151 (873)
T ss_pred eeeecccccccc--------CcHHHHhcCC-cceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhh
Confidence 346666665531 1123344554 6666666666666666655 4444666666666666653 345666666
Q ss_pred cEEecCCCCCCCc-CCCCCCCCCCcEEecCCCCCCCCcccccCCCCcccEEecCCCCCCcccCCc-cc-CCCCcEEEecC
Q 003496 200 KFIDLHHSQYLTK-IPDLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRN-IY-FRSPIAVDFSD 276 (815)
Q Consensus 200 ~~L~L~~~~~~~~-~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~-~~-l~~L~~L~l~~ 276 (815)
|.|||+.|.+... .|.|..-.++++|+|++|.++..--..+..+.+|..|.|+.|.. ..+|.. +. +++|+.|+|..
T Consensus 152 rslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri-ttLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 152 RSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRI-TTLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred hhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcc-cccCHHHhhhcchhhhhhccc
Confidence 6666666654322 12455556666666666655544445555666666666666543 333332 22 55555555555
Q ss_pred CCCCCc---cCCCcccceEEEecCccccccchh-hhccCCCCEEeccCCcCccccccccCCCCCCCEEeeCCCcCCCCcc
Q 003496 277 CVNLTE---FPLVSGNIIELRLWNTRIEEVPSS-IECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFP 352 (815)
Q Consensus 277 ~~~l~~---l~~~~~~L~~L~l~~~~i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~~p 352 (815)
|..-.. -.....+|+.|.+..|.|..+..+ +-.+.++++|+|..|+....--.++.+|+.|+.|+++.|.....-+
T Consensus 231 N~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~ 310 (873)
T KOG4194|consen 231 NRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI 310 (873)
T ss_pred cceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec
Confidence 432111 011223344444444444444332 2334444444444444443333344444444444444444444444
Q ss_pred HHHhccccCCEEeccCCCccccC-chhccCCCCcEEecCCCCCCCccchhhhccccccccccccccCCCC----Cchhhh
Q 003496 353 EILEKMEHLLEIDLRETAIRNLP-SSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQL----PSSISD 427 (815)
Q Consensus 353 ~~l~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~----p~~l~~ 427 (815)
+...-.++|+.|+|+.|.+++++ .++..+..|++|+|+.|.....--..|..+++|+.|+++.|.+... ...+..
T Consensus 311 d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~g 390 (873)
T KOG4194|consen 311 DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNG 390 (873)
T ss_pred chhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhcc
Confidence 44444444444444444444443 2334444444444444443333333344444444444444443221 122333
Q ss_pred hcccceEEecCCCCccCCc-ccCCCCCCCEEEecCCCCcc
Q 003496 428 LNQLKKLKFSGCRGLVLPP-LLSGLSSLTELHLTDCNITE 466 (815)
Q Consensus 428 l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~Ls~~~l~~ 466 (815)
+++|+.|.+.+|+...+|. .+.+++.|++|+|.+|.+..
T Consensus 391 l~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 391 LPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIAS 430 (873)
T ss_pred chhhhheeecCceeeecchhhhccCcccceecCCCCccee
Confidence 4444444444444333332 23344444444444444433
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=8e-30 Score=256.43 Aligned_cols=370 Identities=24% Similarity=0.317 Sum_probs=214.9
Q ss_pred cccccCCceEEEEeCCCCCCccccCcccccCCCCCCCCcCcceEEeCCCCCCCCCCCC-CCccceeeecCCCCccccccc
Q 003496 114 VFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNF-DPENLIELNLPYSNVEQIWEG 192 (815)
Q Consensus 114 ~f~~~~~Lr~L~l~~~~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~lp~~ 192 (815)
...++..|.+|.+++|.+ ..+|..+..+. .+..|+.+.+.+..+|..+ .+.+|+.|+.++|.+..+|++
T Consensus 63 dl~nL~~l~vl~~~~n~l---------~~lp~aig~l~-~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~ 132 (565)
T KOG0472|consen 63 DLKNLACLTVLNVHDNKL---------SQLPAAIGELE-ALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDS 132 (565)
T ss_pred hhhcccceeEEEeccchh---------hhCCHHHHHHH-HHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCch
Confidence 445555556666655544 25555555554 5555666666666666555 556666666666666666666
Q ss_pred ccCCCCccEEecCCCCCCCcCCCCCCCCCCcEEecCCCCCCCCcccccCCCCcccEEecCCCCCCcccCCccc-CCCCcE
Q 003496 193 KKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIY-FRSPIA 271 (815)
Q Consensus 193 ~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~-l~~L~~ 271 (815)
++.+..|..++..+|++.+..++++.+.+|..|++.++.. .+.|+..-+++.|++|+... ..++.+|+.++ +.+|+.
T Consensus 133 i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l-~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~ 210 (565)
T KOG0472|consen 133 IGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKL-KALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLEL 210 (565)
T ss_pred HHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccch-hhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHH
Confidence 6666666666666666555555566666666666665443 33333333466666666544 23566666666 667777
Q ss_pred EEecCCCCCCccCCCcc--cceEEEecCccccccchhhh-ccCCCCEEeccCCcCccccccccCCCCCCCEEeeCCCcCC
Q 003496 272 VDFSDCVNLTEFPLVSG--NIIELRLWNTRIEEVPSSIE-CLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNL 348 (815)
Q Consensus 272 L~l~~~~~l~~l~~~~~--~L~~L~l~~~~i~~lp~~l~-~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~Ls~~~~~ 348 (815)
|++..+. +..+|++.+ .++++++..|.++.+|+... ++++|..||+++|+ ++..|..++.+++|++|++++|..
T Consensus 211 LyL~~Nk-i~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~i- 287 (565)
T KOG0472|consen 211 LYLRRNK-IRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNNDI- 287 (565)
T ss_pred HHhhhcc-cccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccCCcc-
Confidence 7766654 334444333 34677777777777777654 67777777777765 456677777777777777776543
Q ss_pred CCccHHHhccccCCEEeccCCCccccCchh------------------------------------------ccCCCCcE
Q 003496 349 ETFPEILEKMEHLLEIDLRETAIRNLPSSI------------------------------------------EYLEGLRK 386 (815)
Q Consensus 349 ~~~p~~l~~l~~L~~L~L~~~~l~~lp~~l------------------------------------------~~l~~L~~ 386 (815)
..+|..++++ .|+.|.+.||.+..+-..+ ....+.+.
T Consensus 288 s~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tki 366 (565)
T KOG0472|consen 288 SSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKI 366 (565)
T ss_pred ccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhh
Confidence 4466667777 7777777776654221111 01112333
Q ss_pred EecCCCCCCCccchhhhcccc---ccccccccccCCCCCchhhhhcccc-eEEecCCCCccCCcccCCCCCCCEEEecCC
Q 003496 387 LDLGDCSELASLPEKLENLKS---LKYLNAEFSAIGQLPSSISDLNQLK-KLKFSGCRGLVLPPLLSGLSSLTELHLTDC 462 (815)
Q Consensus 387 L~L~~~~~~~~l~~~l~~l~~---L~~L~l~~~~~~~~p~~l~~l~~L~-~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~~ 462 (815)
|.+++-+ ...+|...+.-.. ....+++.|.+.++|..+..+..+. .+.++++...-+|..+..+++|+.|++++|
T Consensus 367 L~~s~~q-lt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN 445 (565)
T KOG0472|consen 367 LDVSDKQ-LTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN 445 (565)
T ss_pred hcccccc-cccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc
Confidence 3333321 2233333222221 3445555566666665555554433 344455555555666777777777777777
Q ss_pred CCcccCcccCCCCCCCeeeccCCcCccCchhhhccCCc
Q 003496 463 NITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQL 500 (815)
Q Consensus 463 ~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L 500 (815)
-+.++|..++.+..|+.|+++.|.|..+|..+..+..|
T Consensus 446 ~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~l 483 (565)
T KOG0472|consen 446 LLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTL 483 (565)
T ss_pred hhhhcchhhhhhhhhheecccccccccchHHHhhHHHH
Confidence 77777777777777777777777776666544333333
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=2e-27 Score=249.39 Aligned_cols=380 Identities=22% Similarity=0.246 Sum_probs=306.1
Q ss_pred CceEEEEeCCCCCCccccCcccccCCCCCCCCcCcceEEeCCCCCCCCCCCC--CCccceeeecCCCCcccccccccCCC
Q 003496 120 NLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNF--DPENLIELNLPYSNVEQIWEGKKQAF 197 (815)
Q Consensus 120 ~Lr~L~l~~~~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~~lp~~~~~l~ 197 (815)
+-+.|+.+++.+... +...++ ..+|..-+.|++++|.+..+...+ ++++|+.++|.+|.++.+|.......
T Consensus 53 ~~~lldcs~~~lea~----~~~~l~---g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sg 125 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAI----DKSRLK---GFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESG 125 (873)
T ss_pred CceeeecCccccccc----cccccC---CcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhccccccccc
Confidence 345667766655321 111222 234557889999999999776553 99999999999999999999999999
Q ss_pred CccEEecCCCCCCCcCC-CCCCCCCCcEEecCCCCCCCCcccccCCCCcccEEecCCCCCCcccCCccc-CCCCcEEEec
Q 003496 198 KLKFIDLHHSQYLTKIP-DLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIY-FRSPIAVDFS 275 (815)
Q Consensus 198 ~L~~L~L~~~~~~~~~p-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~-l~~L~~L~l~ 275 (815)
+|+.|+|.+|.+.+.-. .+.-++.||.|+|+.|.....--.++..-.++++|+|++|....--...+. +.+|.+|.|+
T Consensus 126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs 205 (873)
T KOG4194|consen 126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS 205 (873)
T ss_pred ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecc
Confidence 99999999998665544 578899999999999765443335666678999999999875443223333 7899999999
Q ss_pred CCCCCCccCCC---cccceEEEecCcccccc-chhhhccCCCCEEeccCCcCccccccccCCCCCCCEEeeCCCcCCCCc
Q 003496 276 DCVNLTEFPLV---SGNIIELRLWNTRIEEV-PSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETF 351 (815)
Q Consensus 276 ~~~~l~~l~~~---~~~L~~L~l~~~~i~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~~ 351 (815)
.|....--+.. .+.|+.|+|..|.|..+ -..+..++.|+.|.|..|.+..--...|..+.++++|+|..|+....-
T Consensus 206 rNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn 285 (873)
T KOG4194|consen 206 RNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN 285 (873)
T ss_pred cCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhh
Confidence 98755433333 34668899999999876 456889999999999999887776777889999999999999887777
Q ss_pred cHHHhccccCCEEeccCCCccccC-chhccCCCCcEEecCCCCCCCccchhhhccccccccccccccCCCC-Cchhhhhc
Q 003496 352 PEILEKMEHLLEIDLRETAIRNLP-SSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQL-PSSISDLN 429 (815)
Q Consensus 352 p~~l~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~-p~~l~~l~ 429 (815)
..++.+++.|+.|+++.|.|..+. .+....++|+.|+|+.|....--+..+..|..|+.|+++.|++..+ ...+..++
T Consensus 286 ~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ls 365 (873)
T KOG4194|consen 286 EGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLS 365 (873)
T ss_pred cccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhh
Confidence 778899999999999999999774 5677889999999999998888888899999999999999999998 57788999
Q ss_pred ccceEEecCCCCcc----CCcccCCCCCCCEEEecCCCCcccC-cccCCCCCCCeeeccCCcCccC-chhhhccCCccee
Q 003496 430 QLKKLKFSGCRGLV----LPPLLSGLSSLTELHLTDCNITEIP-ADIGSLSSIVWLALSGNHFERL-PTSVKQLSQLRYL 503 (815)
Q Consensus 430 ~L~~L~l~~~~~~~----lp~~l~~l~~L~~L~Ls~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L 503 (815)
+|+.|++++|.... -...+.++++|++|.+.+|++..+| ..+..++.|+.|+|.+|.+.++ |..+..+ .|++|
T Consensus 366 sL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~L 444 (873)
T KOG4194|consen 366 SLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKEL 444 (873)
T ss_pred hhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhh
Confidence 99999999988432 2234778999999999999999988 5689999999999999999866 4455555 88888
Q ss_pred cccc
Q 003496 504 HLSN 507 (815)
Q Consensus 504 ~l~~ 507 (815)
.+..
T Consensus 445 v~nS 448 (873)
T KOG4194|consen 445 VMNS 448 (873)
T ss_pred hhcc
Confidence 7654
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=8.3e-28 Score=265.51 Aligned_cols=380 Identities=21% Similarity=0.229 Sum_probs=241.2
Q ss_pred cccccCCceEEEEeCCCCCCccccCcccccCCCCCCCCcCcceEEeCCCCCCCCCCCC-CCccceeeecCCCCccccccc
Q 003496 114 VFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNF-DPENLIELNLPYSNVEQIWEG 192 (815)
Q Consensus 114 ~f~~~~~Lr~L~l~~~~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~lp~~ 192 (815)
+..+.-+|+.|++++|.+. .+|..+..++ +|+.|.++.|.+.++|.+. ++.+|++|+|.+|.+..+|.+
T Consensus 40 ~~~~~v~L~~l~lsnn~~~---------~fp~~it~l~-~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~ 109 (1081)
T KOG0618|consen 40 FVEKRVKLKSLDLSNNQIS---------SFPIQITLLS-HLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPAS 109 (1081)
T ss_pred HhhheeeeEEeeccccccc---------cCCchhhhHH-HHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchh
Confidence 3344555999999988764 7888888887 9999999999999999877 899999999999999999999
Q ss_pred ccCCCCccEEecCCCCCCCcCCCCCCCCCCcEEecCC-------------------CCCCCCcccccCCCCcccEEecCC
Q 003496 193 KKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLN-------------------CTNLPYISSSIQNFNNLSVLSLAG 253 (815)
Q Consensus 193 ~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~-------------------~~~~~~~~~~l~~l~~L~~L~l~~ 253 (815)
+..+++|++|++++|.+....+-+..+..++.+..++ +.....++..+.+++. .|++++
T Consensus 110 ~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~ 187 (1081)
T KOG0618|consen 110 ISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRY 187 (1081)
T ss_pred HHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeeccc
Confidence 9999999999999998765544444444444444444 4444445555555555 466666
Q ss_pred CCCC----------cccCC--------cccCCCCcEEEecCCCCCCccCC-CcccceEEEecCccccccchhhhccCCCC
Q 003496 254 CRSL----------VSFPR--------NIYFRSPIAVDFSDCVNLTEFPL-VSGNIIELRLWNTRIEEVPSSIECLTNLE 314 (815)
Q Consensus 254 ~~~l----------~~lp~--------~~~l~~L~~L~l~~~~~l~~l~~-~~~~L~~L~l~~~~i~~lp~~l~~l~~L~ 314 (815)
|... +.+-. .+..++|+.|+...|......+. ...++++++++.+.+..+|++++.+.+|+
T Consensus 188 N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle 267 (1081)
T KOG0618|consen 188 NEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLE 267 (1081)
T ss_pred chhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccce
Confidence 5543 11110 01145666677777766644433 34577999999999999999999999999
Q ss_pred EEeccCCcCccccccccCCCCCCCEEeeCCCcCCCCccHHHhccccCCEEeccCCCccccCchhccC-C-CCcEEecCCC
Q 003496 315 TLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYL-E-GLRKLDLGDC 392 (815)
Q Consensus 315 ~L~L~~~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~l~~lp~~l~~l-~-~L~~L~L~~~ 392 (815)
.|+..+|.+ ..+|..+....+|+.|.+..| .++.+|...++++.|++|+|..|.+..+|..+..- . +|..|+.+.+
T Consensus 268 ~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n 345 (1081)
T KOG0618|consen 268 ALNANHNRL-VALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSN 345 (1081)
T ss_pred EecccchhH-HhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhc
Confidence 999998877 677878888888888888875 45667777888889999999999888887643211 1 1333333322
Q ss_pred CCCCccc-hhhhccccccccccccccCCCC-CchhhhhcccceEEecCCCCccCCc-ccCCCCCCCEEEecCCCCcccCc
Q 003496 393 SELASLP-EKLENLKSLKYLNAEFSAIGQL-PSSISDLNQLKKLKFSGCRGLVLPP-LLSGLSSLTELHLTDCNITEIPA 469 (815)
Q Consensus 393 ~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~Ls~~~l~~lp~ 469 (815)
+. ..+| ..-...+.|+.|.+.+|.++.- -..+.++.+|+.|++++|+...+|. .+.++..|++|+||+|+++.+|.
T Consensus 346 ~l-~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~ 424 (1081)
T KOG0618|consen 346 KL-STLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPD 424 (1081)
T ss_pred cc-cccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhH
Confidence 21 1111 1112233444444444444433 2334444445555555554444443 23444455555555555555554
Q ss_pred ccCCCCCCCeeeccCCcCccCchhhhccCCcceecccccc
Q 003496 470 DIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCN 509 (815)
Q Consensus 470 ~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~l~~c~ 509 (815)
.+..++.|++|...+|++..+| .+..++.|+.+|++.|.
T Consensus 425 tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 425 TVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNN 463 (1081)
T ss_pred HHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccch
Confidence 4555555555555555555555 44445555555555443
No 11
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.92 E-value=2.3e-25 Score=261.02 Aligned_cols=399 Identities=24% Similarity=0.241 Sum_probs=229.5
Q ss_pred EeEEeeecCCC--ChhHHHHhhcCCCc--h-----------hhcHHhhhcCccEEEccC----CeEEecHHHHHHHHHHH
Q 003496 2 FLDIACFLKGE--DKDYVTKIQDDPNF--A-----------HYCLSVLVDKSLVTISCN----NKVQMHDLLQKMGREIV 62 (815)
Q Consensus 2 Fl~~a~F~~~~--~~~~l~~lw~a~gf--~-----------~~~i~~L~~rsli~~~~~----~~~~MHDLl~d~a~~i~ 62 (815)
|||||.||+|| +++.++.+|+|+|| + ..++.+|++++|++..++ .+|+|||++||||.+++
T Consensus 416 FLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ia 495 (889)
T KOG4658|consen 416 FLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIA 495 (889)
T ss_pred HHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHh
Confidence 99999999999 89999999999998 3 234899999999998742 57999999999999999
Q ss_pred HhcccCCCCCcccccchhHHHHHHhhCccccceeEEEecCCCCcceeeccccccccCCceEEEEeCCCCCCccccCcccc
Q 003496 63 RQESVKEPGKRSRLWHYEDVYHVLKKNKGTDAIEGILLNLSKTRDIHLDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVH 142 (815)
Q Consensus 63 ~~e~~~~~~~~~~l~~~~di~~vl~~~~~~~~v~~i~l~~~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~~ 142 (815)
++...... + .+.-+.... ..
T Consensus 496 s~~~~~~e-----------------------~--~iv~~~~~~-----------------------------------~~ 515 (889)
T KOG4658|consen 496 SDFGKQEE-----------------------N--QIVSDGVGL-----------------------------------SE 515 (889)
T ss_pred cccccccc-----------------------c--eEEECCcCc-----------------------------------cc
Confidence 85432110 0 000000000 01
Q ss_pred cCCCCCCCCcCcceEEeCCCCCCCCCCCCCCccceeeecCCCC--cccccc-cccCCCCccEEecCCCCCCCcCC-CCCC
Q 003496 143 LDQGLRYLPEELRYLHWHQYSLKTLPLNFDPENLIELNLPYSN--VEQIWE-GKKQAFKLKFIDLHHSQYLTKIP-DLVE 218 (815)
Q Consensus 143 l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~--i~~lp~-~~~~l~~L~~L~L~~~~~~~~~p-~l~~ 218 (815)
.|+.. +. ...|...+.++.+..++.....++|+.|=+..|. +..++. .+..++.|++|||++|.....+| .++.
T Consensus 516 ~~~~~-~~-~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~ 593 (889)
T KOG4658|consen 516 IPQVK-SW-NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE 593 (889)
T ss_pred ccccc-ch-hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh
Confidence 12111 11 2666777777777777777766678888887775 555544 36778888888888777777777 4677
Q ss_pred CCCCcEEecCCCCCCCCcccccCCCCcccEEecCCCCCCcccCCcccCCCCcEEEecCCCCCCccCCCcccceEEEecCc
Q 003496 219 TPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNT 298 (815)
Q Consensus 219 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~ 298 (815)
+.+||+|+++++. ...+|.++++|++|.+|++..+..+..+
T Consensus 594 Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-------------------------------------- 634 (889)
T KOG4658|consen 594 LVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESI-------------------------------------- 634 (889)
T ss_pred hhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccc--------------------------------------
Confidence 7777777777643 4567777777777777777664433222
Q ss_pred cccccchhhhccCCCCEEeccCCc--CccccccccCCCCCCCEEeeCCCcCCCCccHHHhccccCC----EEeccCCCcc
Q 003496 299 RIEEVPSSIECLTNLETLDLSFCK--RLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLL----EIDLRETAIR 372 (815)
Q Consensus 299 ~i~~lp~~l~~l~~L~~L~L~~~~--~~~~lp~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~----~L~L~~~~l~ 372 (815)
|.....+++|++|.+..-. .....-..+.++.+|+.+.+..... .+-..+..+..|. .+.+.++...
T Consensus 635 -----~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~ 707 (889)
T KOG4658|consen 635 -----PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR 707 (889)
T ss_pred -----cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccc
Confidence 1223446777777775533 1122223344455555555543222 1111122222222 2222223333
Q ss_pred ccCchhccCCCCcEEecCCCCCCCccchhhhccccccccccccccCCCCCchhh-hhcccceEEecCCCCccCCcccCCC
Q 003496 373 NLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSIS-DLNQLKKLKFSGCRGLVLPPLLSGL 451 (815)
Q Consensus 373 ~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~p~~l~-~l~~L~~L~l~~~~~~~lp~~l~~l 451 (815)
..+..+..+.+|+.|.+.+|............ .... .++++..+.+.+|.....+.+....
T Consensus 708 ~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~------------------~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~ 769 (889)
T KOG4658|consen 708 TLISSLGSLGNLEELSILDCGISEIVIEWEES------------------LIVLLCFPNLSKVSILNCHMLRDLTWLLFA 769 (889)
T ss_pred eeecccccccCcceEEEEcCCCchhhcccccc------------------cchhhhHHHHHHHHhhccccccccchhhcc
Confidence 44444555555555555555443221111000 0011 2556666677777777777777788
Q ss_pred CCCCEEEecCCCCcc-cCcccCCCCCCCeeeccCCcCccCc--hhhhccCCcceecccccccccCCCCcccccceecccc
Q 003496 452 SSLTELHLTDCNITE-IPADIGSLSSIVWLALSGNHFERLP--TSVKQLSQLRYLHLSNCNMLQSLPELPIYLVYLEAKN 528 (815)
Q Consensus 452 ~~L~~L~Ls~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~l~~c~~L~~lp~l~~sL~~L~i~~ 528 (815)
++|+.|.+..|...+ +.+....+..+..+.+..+.+..++ .+.+.++++.. +|-....++.+.+..
T Consensus 770 ~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~-----------~~l~~~~l~~~~ve~ 838 (889)
T KOG4658|consen 770 PHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYW-----------LPLSFLKLEELIVEE 838 (889)
T ss_pred CcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEe-----------cccCccchhheehhc
Confidence 899999999988766 3333444444444444443333221 11222222222 222222367777777
Q ss_pred ccccCCCCC
Q 003496 529 CKRLQTLPE 537 (815)
Q Consensus 529 C~~L~~l~~ 537 (815)
||++..+|.
T Consensus 839 ~p~l~~~P~ 847 (889)
T KOG4658|consen 839 CPKLGKLPL 847 (889)
T ss_pred CcccccCcc
Confidence 887777774
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=3.1e-22 Score=247.62 Aligned_cols=285 Identities=29% Similarity=0.463 Sum_probs=214.4
Q ss_pred cccccc-CCceEEEEeCCCCCCccccCcccccCCCCCCCCcCcceEEeCCCCCCCCCCCC-CCccceeeecCCCC-cccc
Q 003496 113 NVFVNM-SNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNF-DPENLIELNLPYSN-VEQI 189 (815)
Q Consensus 113 ~~f~~~-~~Lr~L~l~~~~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~-i~~l 189 (815)
..|..+ .+||.|.+.++.+. .+|..+. +.+|+.|++.++.++.+|..+ .+++|++|+|+++. +..+
T Consensus 582 ~~~~~lp~~Lr~L~~~~~~l~---------~lP~~f~--~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~i 650 (1153)
T PLN03210 582 EGFDYLPPKLRLLRWDKYPLR---------CMPSNFR--PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEI 650 (1153)
T ss_pred cchhhcCcccEEEEecCCCCC---------CCCCcCC--ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcC
Confidence 345555 46999999887653 6777663 358999999999999988877 89999999998764 6667
Q ss_pred cccccCCCCccEEecCCCCCCCcCC-CCCCCCCCcEEecCCCCCCCCcccccCCCCcccEEecCCCCCCcccCCcccCCC
Q 003496 190 WEGKKQAFKLKFIDLHHSQYLTKIP-DLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRS 268 (815)
Q Consensus 190 p~~~~~l~~L~~L~L~~~~~~~~~p-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~l~~ 268 (815)
| .+..+++|++|+|++|..+..+| .+..+++|+.|++++|..+..+|..+ ++++|+.|++++|..+..+|.. ..+
T Consensus 651 p-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--~~n 726 (1153)
T PLN03210 651 P-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI--STN 726 (1153)
T ss_pred C-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc--cCC
Confidence 6 47788999999999988888888 67889999999999998888888776 7889999999998877776643 356
Q ss_pred CcEEEecCCCCCCccCCC---------------------------------cccceEEEecCcc-ccccchhhhccCCCC
Q 003496 269 PIAVDFSDCVNLTEFPLV---------------------------------SGNIIELRLWNTR-IEEVPSSIECLTNLE 314 (815)
Q Consensus 269 L~~L~l~~~~~l~~l~~~---------------------------------~~~L~~L~l~~~~-i~~lp~~l~~l~~L~ 314 (815)
|+.|+++++. +..+|.. ..+|+.|++++|. +..+|.+++++++|+
T Consensus 727 L~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~ 805 (1153)
T PLN03210 727 ISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLE 805 (1153)
T ss_pred cCeeecCCCc-cccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCC
Confidence 6777776665 3333321 1355666666653 446777777777788
Q ss_pred EEeccCCcCccccccccCCCCCCCEEeeCCCcCCCCccHHHhccccCCEEeccCCCccccCchhccCCCCcEEecCCCCC
Q 003496 315 TLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSE 394 (815)
Q Consensus 315 ~L~L~~~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~ 394 (815)
.|++++|..++.+|..+ .+++|+.|++++|..+..+|.. ..+|+.|++++|.++.+|.++..+++|+.|++.+|+.
T Consensus 806 ~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~ 881 (1153)
T PLN03210 806 HLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNN 881 (1153)
T ss_pred EEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCC
Confidence 88887777777777665 6777778888777777766653 3567777788887777777777788888888888777
Q ss_pred CCccchhhhcccccccccccccc
Q 003496 395 LASLPEKLENLKSLKYLNAEFSA 417 (815)
Q Consensus 395 ~~~l~~~l~~l~~L~~L~l~~~~ 417 (815)
+..+|..+..+++|+.+++++|.
T Consensus 882 L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 882 LQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cCccCcccccccCCCeeecCCCc
Confidence 77777777777777777777664
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.89 E-value=5.5e-25 Score=243.39 Aligned_cols=385 Identities=22% Similarity=0.283 Sum_probs=268.3
Q ss_pred CcceEEeCCCCCCCCCCCC-CCccceeeecCCCCcccccccccCCCCccEEecCCCCCCCcCCCCCCCCCCcEEecCCCC
Q 003496 153 ELRYLHWHQYSLKTLPLNF-DPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCT 231 (815)
Q Consensus 153 ~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~ 231 (815)
+|+.|++++|.+...|..+ .+.+|+.|+++.|.|..+|..+.++.+|++|.|.+|........+..+.+|+.|++++|.
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~ 125 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH 125 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc
Confidence 6999999999999999988 899999999999999999999999999999999998854433379999999999999975
Q ss_pred CCCCcccccCCCCcccEEecCCCCCCcccCCcccCCCCcEEEecCCCCCCccCCCcccceE-EEecCccccccchhhhcc
Q 003496 232 NLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIE-LRLWNTRIEEVPSSIECL 310 (815)
Q Consensus 232 ~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~-L~l~~~~i~~lp~~l~~l 310 (815)
...+|..+..+..+..+..++|..+..++... .+.+++..+.....++....+++. |++..|.+. ...+..+
T Consensus 126 -f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~----ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~--~~dls~~ 198 (1081)
T KOG0618|consen 126 -FGPIPLVIEVLTAEEELAASNNEKIQRLGQTS----IKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME--VLDLSNL 198 (1081)
T ss_pred -cCCCchhHHhhhHHHHHhhhcchhhhhhcccc----chhhhhhhhhcccchhcchhhhheeeecccchhh--hhhhhhc
Confidence 56678888888888888888874444444322 677777777777777777777766 888888777 2334445
Q ss_pred CCCCEEeccCCc--------------------CccccccccCCCCCCCEEeeCCCcCCCCccHHHhccccCCEEeccCCC
Q 003496 311 TNLETLDLSFCK--------------------RLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETA 370 (815)
Q Consensus 311 ~~L~~L~L~~~~--------------------~~~~lp~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~ 370 (815)
.+|+.|....+. +....+ -..-.+|+.++++.+. ...+|++++.+.+|+.+....|.
T Consensus 199 ~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~N~ 275 (1081)
T KOG0618|consen 199 ANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNN-LSNLPEWIGACANLEALNANHNR 275 (1081)
T ss_pred cchhhhhhhhcccceEEecCcchheeeeccCcceeecc--ccccccceeeecchhh-hhcchHHHHhcccceEecccchh
Confidence 555555444433 321111 0112345555555533 23345666666666666666666
Q ss_pred ccccCchhccCCCCcEEecCCCCCCCccchhhhccccccccccccccCCCCCchhhh-----------------------
Q 003496 371 IRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISD----------------------- 427 (815)
Q Consensus 371 l~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~p~~l~~----------------------- 427 (815)
+.++|..+....+|+.|.+..|. +..+|.....+++|+.|++..|.+..+|..+-.
T Consensus 276 l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~ 354 (1081)
T KOG0618|consen 276 LVALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYE 354 (1081)
T ss_pred HHhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccccccc
Confidence 66666666666666666665553 344555566677777777777777666542211
Q ss_pred ---hcccceEEecCCCCc-cCCcccCCCCCCCEEEecCCCCcccCcc-cCCCCCCCeeeccCCcCccCchhhhccCCcce
Q 003496 428 ---LNQLKKLKFSGCRGL-VLPPLLSGLSSLTELHLTDCNITEIPAD-IGSLSSIVWLALSGNHFERLPTSVKQLSQLRY 502 (815)
Q Consensus 428 ---l~~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~Ls~~~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~ 502 (815)
++.|+.|.+.+|... ..-+.+.++.+|+.|+|++|++..+|+. +.++..|++|+||||.++.+|..+..+..|++
T Consensus 355 e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~t 434 (1081)
T KOG0618|consen 355 ENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHT 434 (1081)
T ss_pred chhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHH
Confidence 112334444444321 1223467889999999999999999865 78999999999999999999999999999999
Q ss_pred ecccccccccCCCCc--ccccceeccccccccCCCC---CCC-Cchhhhhhhhh
Q 003496 503 LHLSNCNMLQSLPEL--PIYLVYLEAKNCKRLQTLP---EIP-SSVEELDASML 550 (815)
Q Consensus 503 L~l~~c~~L~~lp~l--~~sL~~L~i~~C~~L~~l~---~~p-~~l~~L~~~~~ 550 (815)
|...+|. +.++|++ .+.|+.++++ |..|..+- ..| +.|+.|+.++.
T Consensus 435 L~ahsN~-l~~fPe~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 435 LRAHSNQ-LLSFPELAQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGN 486 (1081)
T ss_pred HhhcCCc-eeechhhhhcCcceEEecc-cchhhhhhhhhhCCCcccceeeccCC
Confidence 9887775 5667864 3567888875 55554332 255 66776665543
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.77 E-value=4.7e-18 Score=195.43 Aligned_cols=71 Identities=20% Similarity=0.290 Sum_probs=39.9
Q ss_pred CcceEEeCCCCCCCCCCCCCCccceeeecCCCCcccccccccCCCCccEEecCCCCCCCcCCCCCCCCCCcEEecCCC
Q 003496 153 ELRYLHWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNC 230 (815)
Q Consensus 153 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~ 230 (815)
.-..|+++++.++++|..+. .+|+.|++.+|+++.+|.. .++|++|+|++|.+. .+|.+ .++|+.|++++|
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lt-sLP~l--p~sL~~L~Ls~N 272 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLT-SLPVL--PPGLLELSIFSN 272 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccC-cccCc--ccccceeeccCC
Confidence 44556666666666666552 3566666666666666642 355666666666533 33321 245555555554
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.75 E-value=2.1e-17 Score=190.02 Aligned_cols=260 Identities=22% Similarity=0.276 Sum_probs=148.1
Q ss_pred cceeeecCCCCcccccccccCCCCccEEecCCCCCCCcCCCCCCCCCCcEEecCCCCCCCCcccccCCCCcccEEecCCC
Q 003496 175 NLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGC 254 (815)
Q Consensus 175 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~ 254 (815)
.-..|+++.+.++.+|..+. .+|+.|++.+|.+. .+|.+ .++|++|++++|. +..+|.. .++|+.|++.+|
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt-~LP~l--p~~Lk~LdLs~N~-LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPAL--PPELRTLEVSGNQ-LTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCC-CCCCC--CCCCcEEEecCCc-cCcccCc---ccccceeeccCC
Confidence 35567777777777777664 36777777777643 34432 3566666666653 2234431 234445555443
Q ss_pred CCCcccCCcccCCCCcEEEecCCCCCCccCCCcccceEEEecCccccccchhhhccCCCCEEeccCCcCccccccccCCC
Q 003496 255 RSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKL 334 (815)
Q Consensus 255 ~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l 334 (815)
. +..+|....+|+.|++++|.++.+|.. +++|+.|++++|.+.+ +|.. .
T Consensus 273 ~------------------------L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p 321 (788)
T PRK15387 273 P------------------------LTHLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPAL---P 321 (788)
T ss_pred c------------------------hhhhhhchhhcCEEECcCCcccccccc---ccccceeECCCCcccc-CCCC---c
Confidence 2 233344445566667777777766653 3567777777765443 3331 2
Q ss_pred CCCCEEeeCCCcCCCCccHHHhccccCCEEeccCCCccccCchhccCCCCcEEecCCCCCCCccchhhhccccccccccc
Q 003496 335 KSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAE 414 (815)
Q Consensus 335 ~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~ 414 (815)
.+|+.|++++|... .+|.. ..+|+.|++++|.+..+|.. .++|+.|++++|
T Consensus 322 ~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N---------------------- 372 (788)
T PRK15387 322 SELCKLWAYNNQLT-SLPTL---PSGLQELSVSDNQLASLPTL---PSELYKLWAYNN---------------------- 372 (788)
T ss_pred ccccccccccCccc-ccccc---ccccceEecCCCccCCCCCC---Ccccceehhhcc----------------------
Confidence 34555666665433 23321 13566666666666655542 234444555544
Q ss_pred cccCCCCCchhhhhcccceEEecCCCCccCCcccCCCCCCCEEEecCCCCcccCcccCCCCCCCeeeccCCcCccCchhh
Q 003496 415 FSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSV 494 (815)
Q Consensus 415 ~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l 494 (815)
.+..+|... .+|+.|++++|....+|.. .++|+.|++++|+++.+|.. +.+|+.|++++|+++.+|..+
T Consensus 373 --~L~~LP~l~---~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl 441 (788)
T PRK15387 373 --RLTSLPALP---SGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESL 441 (788)
T ss_pred --ccccCcccc---cccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcccccChHH
Confidence 444433221 2345555555554444432 24677777777777777653 245677777777777777777
Q ss_pred hccCCcceecccccccccCC
Q 003496 495 KQLSQLRYLHLSNCNMLQSL 514 (815)
Q Consensus 495 ~~l~~L~~L~l~~c~~L~~l 514 (815)
..+++|+.|+|++|+.-...
T Consensus 442 ~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 442 IHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred hhccCCCeEECCCCCCCchH
Confidence 77777777777777754443
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.66 E-value=6.6e-16 Score=179.12 Aligned_cols=76 Identities=22% Similarity=0.354 Sum_probs=34.3
Q ss_pred cCCEEeccCCCccccCchhccCCCCcEEecCCCCCCCccchhhhccccccccccccccCCCCCchhhhh----cccceEE
Q 003496 360 HLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDL----NQLKKLK 435 (815)
Q Consensus 360 ~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~p~~l~~l----~~L~~L~ 435 (815)
+|+.|++++|.+..+|..+ .++|+.|++++|... .+|..+. .+|+.|++++|.+..+|..+..+ +.+..+.
T Consensus 347 sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~ 421 (754)
T PRK15370 347 ELQVLDVSKNQITVLPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRII 421 (754)
T ss_pred cccEEECCCCCCCcCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEE
Confidence 4444444444444444333 234555555554322 3343332 24555555555555554433332 3445555
Q ss_pred ecCCC
Q 003496 436 FSGCR 440 (815)
Q Consensus 436 l~~~~ 440 (815)
+.+|.
T Consensus 422 L~~Np 426 (754)
T PRK15370 422 VEYNP 426 (754)
T ss_pred eeCCC
Confidence 55554
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.65 E-value=7e-18 Score=170.73 Aligned_cols=267 Identities=20% Similarity=0.175 Sum_probs=160.8
Q ss_pred CCCcCcceEEeCCCCCCCCCCCC--CCccceeeecCCCCcccc-cccccCCCCccEEecCCCCCCCcCC--CCCCCCCCc
Q 003496 149 YLPEELRYLHWHQYSLKTLPLNF--DPENLIELNLPYSNVEQI-WEGKKQAFKLKFIDLHHSQYLTKIP--DLVETPNLE 223 (815)
Q Consensus 149 ~l~~~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~~~p--~l~~l~~L~ 223 (815)
.+|..-..+++..|.++.||+.. .+++||.|||++|.|+.| |..++.+..|..|-+.++..++.+| .|.++..|+
T Consensus 64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 34567888899999999998654 899999999999999986 6788888888888887755566777 588888898
Q ss_pred EEecCCCCCCCCcccccCCCCcccEEecCCCCCCcccCCcc-c-CCCCcEEEecCCCCCC------------ccCCCccc
Q 003496 224 RINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNI-Y-FRSPIAVDFSDCVNLT------------EFPLVSGN 289 (815)
Q Consensus 224 ~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~-~-l~~L~~L~l~~~~~l~------------~l~~~~~~ 289 (815)
.|.+.-|...-.....+..+++|..|.+.++. ...++... . +..++.+.+..++.+. ..|...+.
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg 222 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG 222 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence 88888776555555677888888888888754 44444422 2 6777777777666321 11111111
Q ss_pred c---eEEEecCccccccchh--hhccCCCCEEeccCCcCccccc-cccCCCCCCCEEeeCCCcCCCCccHHHhccccCCE
Q 003496 290 I---IELRLWNTRIEEVPSS--IECLTNLETLDLSFCKRLKRVS-TSICKLKSLCWLELGGCSNLETFPEILEKMEHLLE 363 (815)
Q Consensus 290 L---~~L~l~~~~i~~lp~~--l~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~ 363 (815)
. ....+...++..+++. ...+..+..=-.+.|......| ..|.+|++|++|++++|...+.-+.+|.+...+++
T Consensus 223 arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~e 302 (498)
T KOG4237|consen 223 ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQE 302 (498)
T ss_pred ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhh
Confidence 1 1111112222221111 0011111111111222222222 22556666666666666666555566666666666
Q ss_pred EeccCCCccccCc-hhccCCCCcEEecCCCCCCCccchhhhccccccccccccc
Q 003496 364 IDLRETAIRNLPS-SIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFS 416 (815)
Q Consensus 364 L~L~~~~l~~lp~-~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~ 416 (815)
|.|..|++..+.. .+..+.+|+.|+|.+|+.....|..|..+.+|..|++-.|
T Consensus 303 L~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 303 LYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred hhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccC
Confidence 6666666665542 3455666666666666666666666666666666665443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.65 E-value=4.9e-16 Score=180.18 Aligned_cols=243 Identities=25% Similarity=0.338 Sum_probs=118.8
Q ss_pred CCcEEecCCCCCCCCcccccCCCCcccEEecCCCCCCcccCCcccCCCCcEEEecCCCCCCccCCC-cccceEEEecCcc
Q 003496 221 NLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLV-SGNIIELRLWNTR 299 (815)
Q Consensus 221 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~-~~~L~~L~l~~~~ 299 (815)
+...|+++++. +..+|..+. +.|+.|++++|. +..+|..+ ..+|+.|++++|. +..+|.. ..+++.|++++|.
T Consensus 179 ~~~~L~L~~~~-LtsLP~~Ip--~~L~~L~Ls~N~-LtsLP~~l-~~nL~~L~Ls~N~-LtsLP~~l~~~L~~L~Ls~N~ 252 (754)
T PRK15370 179 NKTELRLKILG-LTTIPACIP--EQITTLILDNNE-LKSLPENL-QGNIKTLYANSNQ-LTSIPATLPDTIQEMELSINR 252 (754)
T ss_pred CceEEEeCCCC-cCcCCcccc--cCCcEEEecCCC-CCcCChhh-ccCCCEEECCCCc-cccCChhhhccccEEECcCCc
Confidence 45667777653 445665443 467777777764 44555543 2456666666553 3344432 2244555555555
Q ss_pred ccccchhhhccCCCCEEeccCCcCccccccccCCCCCCCEEeeCCCcCCCCccHHHhccccCCEEeccCCCccccCchhc
Q 003496 300 IEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIE 379 (815)
Q Consensus 300 i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~l~~lp~~l~ 379 (815)
+..+|..+. ++|+.|++++|.+. .+|..+. ++|+.|++++|... .+|..+. ++|+.|++++|.+..+|..+
T Consensus 253 L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l- 323 (754)
T PRK15370 253 ITELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTALPETL- 323 (754)
T ss_pred cCcCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccccCCccc-
Confidence 555554432 34555555544332 3343322 24444444444222 2222211 23344444444444333222
Q ss_pred cCCCCcEEecCCCCCCCccchhhhccccccccccccccCCCCCchhhhhcccceEEecCCCCccCCcccCCCCCCCEEEe
Q 003496 380 YLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHL 459 (815)
Q Consensus 380 ~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L 459 (815)
.++|+.|++++|.+..+|..+. ++|+.|++++|....+|..+ .++|+.|+|
T Consensus 324 -------------------------~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdL 374 (754)
T PRK15370 324 -------------------------PPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDV 374 (754)
T ss_pred -------------------------cccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEEC
Confidence 1344444444444444443332 34555555555544444433 245666666
Q ss_pred cCCCCcccCcccCCCCCCCeeeccCCcCccCchhhhc----cCCcceecccccc
Q 003496 460 TDCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQ----LSQLRYLHLSNCN 509 (815)
Q Consensus 460 s~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~----l~~L~~L~l~~c~ 509 (815)
++|+++.+|..+. .+|+.|++++|++..+|..+.. ++++..|++.+|+
T Consensus 375 s~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 375 SRNALTNLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CCCcCCCCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 6666666665443 3566666666666665554433 3556666666665
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.51 E-value=8.1e-16 Score=138.37 Aligned_cols=155 Identities=26% Similarity=0.462 Sum_probs=103.5
Q ss_pred CCCCCCCEEeeCCCcCCCCccHHHhccccCCEEeccCCCccccCchhccCCCCcEEecCCCCCCCccchhhhcccccccc
Q 003496 332 CKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYL 411 (815)
Q Consensus 332 ~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L 411 (815)
..+.+...|.+++|. +..+|..+..+.+|+.|++.+|+++++|.+++.++.|+.|++.-| .+..+|..|+.++.|+.|
T Consensus 30 f~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVL 107 (264)
T ss_pred cchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhh
Confidence 345556666666643 344566677777788888888888888888888888887777654 355677777777777777
Q ss_pred ccccccCCCCCchhhhhcccceEEecCCCCccCCcccCCCCCCCEEEecCCCCcccCcccCCCCCCCeeeccCCcCccCc
Q 003496 412 NAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLP 491 (815)
Q Consensus 412 ~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 491 (815)
++..|.+.+- .+|..+..+..|+.|.+++|.+.-+|.+++.+++|+.|.+..|.+.++|
T Consensus 108 dltynnl~e~---------------------~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lp 166 (264)
T KOG0617|consen 108 DLTYNNLNEN---------------------SLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLP 166 (264)
T ss_pred hccccccccc---------------------cCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCc
Confidence 7777766543 2333344444555555555555556666666777777777777777777
Q ss_pred hhhhccCCcceecccccc
Q 003496 492 TSVKQLSQLRYLHLSNCN 509 (815)
Q Consensus 492 ~~l~~l~~L~~L~l~~c~ 509 (815)
..++.++.|+.|.|.+|+
T Consensus 167 keig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 167 KEIGDLTRLRELHIQGNR 184 (264)
T ss_pred HHHHHHHHHHHHhcccce
Confidence 777777777777777765
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.47 E-value=4.9e-15 Score=159.55 Aligned_cols=59 Identities=27% Similarity=0.344 Sum_probs=40.2
Q ss_pred CCCCCEEEecCCCCcc-----cCcccCCCCCCCeeeccCCcCcc-----Cchhhhcc-CCcceecccccc
Q 003496 451 LSSLTELHLTDCNITE-----IPADIGSLSSIVWLALSGNHFER-----LPTSVKQL-SQLRYLHLSNCN 509 (815)
Q Consensus 451 l~~L~~L~Ls~~~l~~-----lp~~l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l-~~L~~L~l~~c~ 509 (815)
.+.|++|++++|.+++ +...+..+++|+.+++++|.+.. +...+... +.|+.|++.+++
T Consensus 249 ~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 249 NISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 3567777777777752 33445566788888888888763 33344555 788888888765
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.47 E-value=1e-14 Score=157.07 Aligned_cols=190 Identities=21% Similarity=0.182 Sum_probs=102.2
Q ss_pred chhhhccCCCCEEeccCCcCccccccccCCCCC---CCEEeeCCCcCCC----CccHHHhcc-ccCCEEeccCCCcc---
Q 003496 304 PSSIECLTNLETLDLSFCKRLKRVSTSICKLKS---LCWLELGGCSNLE----TFPEILEKM-EHLLEIDLRETAIR--- 372 (815)
Q Consensus 304 p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~---L~~L~Ls~~~~~~----~~p~~l~~l-~~L~~L~L~~~~l~--- 372 (815)
+..+..+++|+.|++++|.+....+..+..+.+ |+.|++++|.... .+...+..+ ++|+.|++++|.++
T Consensus 74 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 153 (319)
T cd00116 74 LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS 153 (319)
T ss_pred HHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH
Confidence 334445556666666665554444333333333 6666666655432 122233344 55555665555554
Q ss_pred --ccCchhccCCCCcEEecCCCCCCCc----cchhhhccccccccccccccCCCCCchhhhhcccceEEecCCCCccCCc
Q 003496 373 --NLPSSIEYLEGLRKLDLGDCSELAS----LPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPP 446 (815)
Q Consensus 373 --~lp~~l~~l~~L~~L~L~~~~~~~~----l~~~l~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp~ 446 (815)
.++..+..+++|+.|++++|..... ++..+..+++|+.|++++|.+.... . ..++.
T Consensus 154 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~--~----------------~~l~~ 215 (319)
T cd00116 154 CEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG--A----------------SALAE 215 (319)
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHH--H----------------HHHHH
Confidence 2233344445555555555544321 1222233334444444444433210 0 11223
Q ss_pred ccCCCCCCCEEEecCCCCcc--c---Cccc-CCCCCCCeeeccCCcCc-----cCchhhhccCCcceecccccccc
Q 003496 447 LLSGLSSLTELHLTDCNITE--I---PADI-GSLSSIVWLALSGNHFE-----RLPTSVKQLSQLRYLHLSNCNML 511 (815)
Q Consensus 447 ~l~~l~~L~~L~Ls~~~l~~--l---p~~l-~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~l~~c~~L 511 (815)
.+..+++|+.|++++|.+++ + ...+ ...+.|++|++++|.++ .+...+..+++|+++++++|+.-
T Consensus 216 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 216 TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 45567888899998888775 1 1111 13578999999999885 34556667789999999998754
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.45 E-value=2.2e-15 Score=135.62 Aligned_cols=163 Identities=31% Similarity=0.454 Sum_probs=130.5
Q ss_pred cCCCCcEEecCCCCCCCccchhhhccccccccccccccCCCCCchhhhhcccceEEecCCCCccCCcccCCCCCCCEEEe
Q 003496 380 YLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHL 459 (815)
Q Consensus 380 ~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L 459 (815)
.+.+.+.|.+++|+ +..+|..+..+.+|+.|++++|.+.++|.+++.+++|+.|++.-|+...+|..++.+|.|+.|++
T Consensus 31 ~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 31 NMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred chhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 44556666666654 34456667778888888888888888888888888888888888888889999999999999999
Q ss_pred cCCCCcc--cCcccCCCCCCCeeeccCCcCccCchhhhccCCcceecccccccccCCCCc---ccccceeccccccccCC
Q 003496 460 TDCNITE--IPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNMLQSLPEL---PIYLVYLEAKNCKRLQT 534 (815)
Q Consensus 460 s~~~l~~--lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~l~~c~~L~~lp~l---~~sL~~L~i~~C~~L~~ 534 (815)
..|++.+ +|..|..++.|+-|.|++|.|+-+|..++.+++|+.|.+.+|..+ ++|.- ...|++|+|.+. +
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn----r 184 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN----R 184 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc----e
Confidence 9999998 899999999999999999999999999999999999999998744 57753 356777888763 2
Q ss_pred CCCCCCchhhhhhh
Q 003496 535 LPEIPSSVEELDAS 548 (815)
Q Consensus 535 l~~~p~~l~~L~~~ 548 (815)
+.-+|+.+..|+..
T Consensus 185 l~vlppel~~l~l~ 198 (264)
T KOG0617|consen 185 LTVLPPELANLDLV 198 (264)
T ss_pred eeecChhhhhhhhh
Confidence 33345555555543
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.38 E-value=5.6e-14 Score=142.76 Aligned_cols=298 Identities=19% Similarity=0.220 Sum_probs=173.6
Q ss_pred EeCCCCCCCCCCCCCCccceeeecCCCCcccccc-cccCCCCccEEecCCCCCCCcCC-CCCCCCCCcEEecCCCCCCCC
Q 003496 158 HWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWE-GKKQAFKLKFIDLHHSQYLTKIP-DLVETPNLERINLLNCTNLPY 235 (815)
Q Consensus 158 ~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~~p-~l~~l~~L~~L~L~~~~~~~~ 235 (815)
+-++-.++++|... +..-+.++|..|.|+.||+ .++.+++||.|||++|.+...-| .|.++..|-+|.+.++..+..
T Consensus 52 dCr~~GL~eVP~~L-P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 52 DCRGKGLTEVPANL-PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred EccCCCcccCcccC-CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 34455567777665 4466889999999999987 58999999999999999877767 588888888888888555666
Q ss_pred ccc-ccCCCCcccEEecCCCCCCcccCCcccCCCCcEEEecCCCCCCccCCCcccceEEEecCccccccch-hhhccCCC
Q 003496 236 ISS-SIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPS-SIECLTNL 313 (815)
Q Consensus 236 ~~~-~l~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp~-~l~~l~~L 313 (815)
+|+ .++.|..|+.|.+.-|..- .++... -....++..|.+.+|.+..++. .+..+..+
T Consensus 131 l~k~~F~gL~slqrLllNan~i~-Cir~~a-------------------l~dL~~l~lLslyDn~~q~i~~~tf~~l~~i 190 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANHIN-CIRQDA-------------------LRDLPSLSLLSLYDNKIQSICKGTFQGLAAI 190 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhhhc-chhHHH-------------------HHHhhhcchhcccchhhhhhccccccchhcc
Confidence 664 4677777777776654321 111100 0111223334444455555544 44555555
Q ss_pred CEEeccCCcCccccccccCCCCCCCEEeeCCCcCCCCccHHHhccccCCEEeccCCCccccCch--hccCCCCcEEecCC
Q 003496 314 ETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSS--IEYLEGLRKLDLGD 391 (815)
Q Consensus 314 ~~L~L~~~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~l~~lp~~--l~~l~~L~~L~L~~ 391 (815)
+.+.+..+.+.. .++++.|... ....|..++......-..+....+..+... ...+.++..=-...
T Consensus 191 ~tlhlA~np~ic-----dCnL~wla~~-------~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~ 258 (498)
T KOG4237|consen 191 KTLHLAQNPFIC-----DCNLPWLADD-------LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSE 258 (498)
T ss_pred chHhhhcCcccc-----ccccchhhhH-------HhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccc
Confidence 555555443221 1112211111 111122222222222222222222222211 11111221112233
Q ss_pred CCCCCccch-hhhccccccccccccccCCCC-CchhhhhcccceEEecCCCCccCC-cccCCCCCCCEEEecCCCCcc-c
Q 003496 392 CSELASLPE-KLENLKSLKYLNAEFSAIGQL-PSSISDLNQLKKLKFSGCRGLVLP-PLLSGLSSLTELHLTDCNITE-I 467 (815)
Q Consensus 392 ~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~Ls~~~l~~-l 467 (815)
|......|. .|..+++|+.|++++|.++.+ +.+|..+..+++|.+..|+...+. ..+.++..|+.|+|.+|+|+. -
T Consensus 259 d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~ 338 (498)
T KOG4237|consen 259 DFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVA 338 (498)
T ss_pred cCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEe
Confidence 333344442 366777788888888877777 667777777777777777654443 346778888888888888887 5
Q ss_pred CcccCCCCCCCeeeccCCcCc
Q 003496 468 PADIGSLSSIVWLALSGNHFE 488 (815)
Q Consensus 468 p~~l~~l~~L~~L~Ls~n~l~ 488 (815)
|-.|..+.+|.+|+|-.|.+.
T Consensus 339 ~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 339 PGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred cccccccceeeeeehccCccc
Confidence 667888888888888777553
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.23 E-value=1.4e-11 Score=145.66 Aligned_cols=323 Identities=22% Similarity=0.306 Sum_probs=193.1
Q ss_pred cCCceEEEEeCCCCCCccccCcccccCCCCCCCCcCcceEEeCCCC--CCCCCCCC--CCccceeeecCCC-Cccccccc
Q 003496 118 MSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYS--LKTLPLNF--DPENLIELNLPYS-NVEQIWEG 192 (815)
Q Consensus 118 ~~~Lr~L~l~~~~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~--l~~lp~~~--~l~~L~~L~L~~~-~i~~lp~~ 192 (815)
....|...+.++.+. .++....+. +|++|-+.++. +..++..| .++.|++|||++| .+.+||+.
T Consensus 522 ~~~~rr~s~~~~~~~---------~~~~~~~~~--~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~ 590 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIE---------HIAGSSENP--KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS 590 (889)
T ss_pred hhheeEEEEeccchh---------hccCCCCCC--ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH
Confidence 377888888877653 455544433 79999999996 77777754 8999999999964 57889999
Q ss_pred ccCCCCccEEecCCCCCCCcCC-CCCCCCCCcEEecCCCCCCCCcccccCCCCcccEEecCCCCCCcccCCcccCCCCcE
Q 003496 193 KKQAFKLKFIDLHHSQYLTKIP-DLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIA 271 (815)
Q Consensus 193 ~~~l~~L~~L~L~~~~~~~~~p-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~ 271 (815)
++.|.+||+|+|++..+. .+| .+.++..|.+|++..+..+..+|..+..+.+|++|.+........
T Consensus 591 I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~------------ 657 (889)
T KOG4658|consen 591 IGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSND------------ 657 (889)
T ss_pred HhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccc------------
Confidence 999999999999999865 555 899999999999999887777777777799999999876320000
Q ss_pred EEecCCCCCCccCCCcccceEEEecCccccccchhhhccCCCCEEeccCCcCccccccccCCCCCCC----EEeeCCCcC
Q 003496 272 VDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLC----WLELGGCSN 347 (815)
Q Consensus 272 L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~----~L~Ls~~~~ 347 (815)
...-..+.++.+|+.+.+..... .+-..+..+..|. .+.+.+ ..
T Consensus 658 -----------------------------~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~-~~ 705 (889)
T KOG4658|consen 658 -----------------------------KLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEG-CS 705 (889)
T ss_pred -----------------------------hhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcc-cc
Confidence 00111223445555555543322 1111122233333 333333 23
Q ss_pred CCCccHHHhccccCCEEeccCCCccccCc-hhc-----c-CCCCcEEecCCCCCCCccchhhhccccccccccccccCCC
Q 003496 348 LETFPEILEKMEHLLEIDLRETAIRNLPS-SIE-----Y-LEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQ 420 (815)
Q Consensus 348 ~~~~p~~l~~l~~L~~L~L~~~~l~~lp~-~l~-----~-l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~ 420 (815)
....+..+..+.+|+.|.+.++.+.+... +.. . ++++..+.+.+|.. ..
T Consensus 706 ~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~------------------------~r 761 (889)
T KOG4658|consen 706 KRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHM------------------------LR 761 (889)
T ss_pred cceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccc------------------------cc
Confidence 34455667889999999999988864322 111 1 22333333333332 22
Q ss_pred CCchhhhhcccceEEecCCCCccCC-cccCCCCCCCEEEecCCCCcccC--cccCCCCCCCeeeccCCcCccCchhhhcc
Q 003496 421 LPSSISDLNQLKKLKFSGCRGLVLP-PLLSGLSSLTELHLTDCNITEIP--ADIGSLSSIVWLALSGNHFERLPTSVKQL 497 (815)
Q Consensus 421 ~p~~l~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~Ls~~~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l 497 (815)
.+.+....++|+.|.+..|.....| +....+..+..+.+..+.+..++ .+.+.++++..+.+. +
T Consensus 762 ~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~-------------~ 828 (889)
T KOG4658|consen 762 DLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLS-------------F 828 (889)
T ss_pred ccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccC-------------c
Confidence 2333334455555555555533322 22333333443333333333221 122333333332222 2
Q ss_pred CCcceecccccccccCCCCcccccceeccccc-cccCCCCC
Q 003496 498 SQLRYLHLSNCNMLQSLPELPIYLVYLEAKNC-KRLQTLPE 537 (815)
Q Consensus 498 ~~L~~L~l~~c~~L~~lp~l~~sL~~L~i~~C-~~L~~l~~ 537 (815)
+.|+.+.+..|++++++|. +..+.+.+| +.+...|+
T Consensus 829 ~~l~~~~ve~~p~l~~~P~----~~~~~i~~~~~~~~~~~~ 865 (889)
T KOG4658|consen 829 LKLEELIVEECPKLGKLPL----LSTLTIVGCEEKLKEYPD 865 (889)
T ss_pred cchhheehhcCcccccCcc----ccccceeccccceeecCC
Confidence 2388888888999988885 345667776 66666664
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.97 E-value=1e-10 Score=124.59 Aligned_cols=191 Identities=27% Similarity=0.407 Sum_probs=129.5
Q ss_pred eEEEecCccccccchhhhccCCCCEEeccCCcCccccccccCCCCCCCEEeeCCCcCCCCccHHHhccccCCEEeccCCC
Q 003496 291 IELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETA 370 (815)
Q Consensus 291 ~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~ 370 (815)
...+++.|++.++|..+..+..|+.+.+..|. ...+|..+.++..|..|+++.|.
T Consensus 78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~-------------------------~r~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 78 VFADLSRNRFSELPEEACAFVSLESLILYHNC-------------------------IRTIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred hhhhccccccccCchHHHHHHHHHHHHHHhcc-------------------------ceecchhhhhhhHHHHhhhccch
Confidence 34445555566666655555555555544432 23455566666666666666676
Q ss_pred ccccCchhccCCCCcEEecCCCCCCCccchhhhccccccccccccccCCCCCchhhhhcccceEEecCCCCccCCcccCC
Q 003496 371 IRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSG 450 (815)
Q Consensus 371 l~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~ 450 (815)
+..+|..++.++ |+.|-+++| +++.+|+.++.++.|..|+.+.|.+..+|..++.+.+|+.|++..|....+|..+..
T Consensus 133 lS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~ 210 (722)
T KOG0532|consen 133 LSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCS 210 (722)
T ss_pred hhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhC
Confidence 666666666555 566666554 355667777777777777777777777777777777777777777777777776663
Q ss_pred CCCCCEEEecCCCCcccCcccCCCCCCCeeeccCCcCccCchhhhc---cCCcceecccccc
Q 003496 451 LSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQ---LSQLRYLHLSNCN 509 (815)
Q Consensus 451 l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~---l~~L~~L~l~~c~ 509 (815)
+ .|..||++.|++..+|..|..|+.|++|-|.+|.+.+=|..+.- ..--++|++.-|+
T Consensus 211 L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 211 L-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred C-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 3 47888888888888888888888888888888888877765532 3334677777774
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.94 E-value=1.2e-09 Score=121.29 Aligned_cols=180 Identities=32% Similarity=0.494 Sum_probs=124.7
Q ss_pred CCCCCCEEeeCCCcCCCCccHHHhccc-cCCEEeccCCCccccCchhccCCCCcEEecCCCCCCCccchhhhcccccccc
Q 003496 333 KLKSLCWLELGGCSNLETFPEILEKME-HLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYL 411 (815)
Q Consensus 333 ~l~~L~~L~Ls~~~~~~~~p~~l~~l~-~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L 411 (815)
.++.++.|.+.++.. ..++.....+. +|+.|++++|.+..+|..+..+++|+.|++++|+. ..+|.....++.|+.|
T Consensus 114 ~~~~l~~L~l~~n~i-~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~~~L~~L 191 (394)
T COG4886 114 ELTNLTSLDLDNNNI-TDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL-SDLPKLLSNLSNLNNL 191 (394)
T ss_pred cccceeEEecCCccc-ccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchh-hhhhhhhhhhhhhhhe
Confidence 345555555555433 33344444443 67777777777777766667777777777776653 3334444466777777
Q ss_pred ccccccCCCCCchhhhhcccceEEecCCCCccCCcccCCCCCCCEEEecCCCCcccCcccCCCCCCCeeeccCCcCccCc
Q 003496 412 NAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLP 491 (815)
Q Consensus 412 ~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 491 (815)
++++|.+..+|..+.....|+.+.++++.....+..+..+..+..|.+.++++..++..++.+++|++|++++|.++.++
T Consensus 192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~ 271 (394)
T COG4886 192 DLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSIS 271 (394)
T ss_pred eccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccccccc
Confidence 77777777777766666667777777776666677777778888888888887777777888888888888888888777
Q ss_pred hhhhccCCcceecccccccccCCC
Q 003496 492 TSVKQLSQLRYLHLSNCNMLQSLP 515 (815)
Q Consensus 492 ~~l~~l~~L~~L~l~~c~~L~~lp 515 (815)
. +..+.+|+.|+++++.....+|
T Consensus 272 ~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 272 S-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred c-ccccCccCEEeccCccccccch
Confidence 5 7778888888888877665544
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.91 E-value=7e-11 Score=125.84 Aligned_cols=186 Identities=29% Similarity=0.425 Sum_probs=162.0
Q ss_pred EEeeCCCcCCCCccHHHhccccCCEEeccCCCccccCchhccCCCCcEEecCCCCCCCccchhhhccccccccccccccC
Q 003496 339 WLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAI 418 (815)
Q Consensus 339 ~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~~~ 418 (815)
..+++.|. ...+|..+..+..|+.+.+..|.+..+|..+.++..|+.|+|+.|+ +..+|..++.|+ |+.|.+++|++
T Consensus 79 ~aDlsrNR-~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 79 FADLSRNR-FSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNNKL 155 (722)
T ss_pred hhhccccc-cccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecCcc
Confidence 44555533 4567888889999999999999999999999999999999999876 456787788776 89999999999
Q ss_pred CCCCchhhhhcccceEEecCCCCccCCcccCCCCCCCEEEecCCCCcccCcccCCCCCCCeeeccCCcCccCchhhhccC
Q 003496 419 GQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLS 498 (815)
Q Consensus 419 ~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~ 498 (815)
+.+|..++.+..|..|+.+.|....+|+.++++.+|+.|.+..|++..+|+.+. .-.|..||++.|++..||..+..++
T Consensus 156 ~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~iPv~fr~m~ 234 (722)
T KOG0532|consen 156 TSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISYLPVDFRKMR 234 (722)
T ss_pred ccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceeecchhhhhhh
Confidence 999999999999999999999999999999999999999999999999999988 4468899999999999999999999
Q ss_pred CcceecccccccccCCCCc------ccccceeccccc
Q 003496 499 QLRYLHLSNCNMLQSLPEL------PIYLVYLEAKNC 529 (815)
Q Consensus 499 ~L~~L~l~~c~~L~~lp~l------~~sL~~L~i~~C 529 (815)
.|++|.|.+|+ |++=|.- ..-.++|++.-|
T Consensus 235 ~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 235 HLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 99999999988 6665531 122578888888
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=6.8e-10 Score=115.10 Aligned_cols=180 Identities=21% Similarity=0.230 Sum_probs=109.8
Q ss_pred CCCCCCCEEeeCCCcCCC--CccHHHhccccCCEEeccCCCccccCch--hccCCCCcEEecCCCCCCCc-cchhhhccc
Q 003496 332 CKLKSLCWLELGGCSNLE--TFPEILEKMEHLLEIDLRETAIRNLPSS--IEYLEGLRKLDLGDCSELAS-LPEKLENLK 406 (815)
Q Consensus 332 ~~l~~L~~L~Ls~~~~~~--~~p~~l~~l~~L~~L~L~~~~l~~lp~~--l~~l~~L~~L~L~~~~~~~~-l~~~l~~l~ 406 (815)
..+++++.|+|++|-... .+-.....+++|+.|+++.|.+.....+ -..++.|+.|.|+.|..... +...+..+|
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 345555555555543221 2223344556666666666655533222 12466777777777765422 233345567
Q ss_pred ccccccccccc-CCCCCchhhhhcccceEEecCCCCccCC--cccCCCCCCCEEEecCCCCcc--cCcc-----cCCCCC
Q 003496 407 SLKYLNAEFSA-IGQLPSSISDLNQLKKLKFSGCRGLVLP--PLLSGLSSLTELHLTDCNITE--IPAD-----IGSLSS 476 (815)
Q Consensus 407 ~L~~L~l~~~~-~~~~p~~l~~l~~L~~L~l~~~~~~~lp--~~l~~l~~L~~L~Ls~~~l~~--lp~~-----l~~l~~ 476 (815)
+|+.|++..|. +........-+..|+.|+|++|....++ ...+.++.|+.|+++.|++.+ +|+. ...+++
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~k 302 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPK 302 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccccc
Confidence 77777777774 2222344455666777777777766665 457788888888888888877 4443 466788
Q ss_pred CCeeeccCCcCccCc--hhhhccCCcceecccccccc
Q 003496 477 IVWLALSGNHFERLP--TSVKQLSQLRYLHLSNCNML 511 (815)
Q Consensus 477 L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~l~~c~~L 511 (815)
|++|++..|++...+ ..+..+++|+.|.+..++.-
T Consensus 303 L~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 303 LEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 888888888886554 24556777777777666533
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.89 E-value=2.9e-09 Score=118.12 Aligned_cols=185 Identities=32% Similarity=0.419 Sum_probs=123.2
Q ss_pred ccCCCCEEeccCCcCccccccccCCCC-CCCEEeeCCCcCCCCccHHHhccccCCEEeccCCCccccCchhccCCCCcEE
Q 003496 309 CLTNLETLDLSFCKRLKRVSTSICKLK-SLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKL 387 (815)
Q Consensus 309 ~l~~L~~L~L~~~~~~~~lp~~l~~l~-~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L 387 (815)
.++.++.|++.++... .++.....+. +|+.|+++++.. ..+|..++.+++|+.|++++|.+.++|...+.+++|+.|
T Consensus 114 ~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 114 ELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred cccceeEEecCCcccc-cCccccccchhhcccccccccch-hhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 3344444444443322 2333333332 555555555332 233345566666666666666666666666666667777
Q ss_pred ecCCCCCCCccchhhhccccccccccccccCCCCCchhhhhcccceEEecCCCCccCCcccCCCCCCCEEEecCCCCccc
Q 003496 388 DLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEI 467 (815)
Q Consensus 388 ~L~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~~~l~~l 467 (815)
+++++.. ..+|.....+..|+.|.+++|.+...+..+..+.++..+.+.++....++..++.+++|+.|++++|.++++
T Consensus 192 ~ls~N~i-~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i 270 (394)
T COG4886 192 DLSGNKI-SDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSI 270 (394)
T ss_pred eccCCcc-ccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccc
Confidence 7766543 344444445555777777777666667777777788888877777777788889999999999999999998
Q ss_pred CcccCCCCCCCeeeccCCcCccCchhhhcc
Q 003496 468 PADIGSLSSIVWLALSGNHFERLPTSVKQL 497 (815)
Q Consensus 468 p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l 497 (815)
+. ++.+.+|+.|++++|.+..++......
T Consensus 271 ~~-~~~~~~l~~L~~s~n~~~~~~~~~~~~ 299 (394)
T COG4886 271 SS-LGSLTNLRELDLSGNSLSNALPLIALL 299 (394)
T ss_pred cc-ccccCccCEEeccCccccccchhhhcc
Confidence 87 899999999999999988666444433
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=7.5e-10 Score=114.76 Aligned_cols=199 Identities=19% Similarity=0.181 Sum_probs=126.6
Q ss_pred ceEEEecCccccccc--hhhhccCCCCEEeccCCcCccc--cccccCCCCCCCEEeeCCCcCCCCccH-HHhccccCCEE
Q 003496 290 IIELRLWNTRIEEVP--SSIECLTNLETLDLSFCKRLKR--VSTSICKLKSLCWLELGGCSNLETFPE-ILEKMEHLLEI 364 (815)
Q Consensus 290 L~~L~l~~~~i~~lp--~~l~~l~~L~~L~L~~~~~~~~--lp~~l~~l~~L~~L~Ls~~~~~~~~p~-~l~~l~~L~~L 364 (815)
|+.+.|.++.+...+ .....+++++.|||+.|-+... +-.-...|++|+.|+|+.|...-.... .-..++.|+.|
T Consensus 123 L~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L 202 (505)
T KOG3207|consen 123 LREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQL 202 (505)
T ss_pred hhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheE
Confidence 344445555555444 2456677777777777644332 222244677777777776654322111 11245667777
Q ss_pred eccCCCcc--ccCchhccCCCCcEEecCCCCCCCccchhhhccccccccccccccCCCCC--chhhhhcccceEEecCCC
Q 003496 365 DLRETAIR--NLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLP--SSISDLNQLKKLKFSGCR 440 (815)
Q Consensus 365 ~L~~~~l~--~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~p--~~l~~l~~L~~L~l~~~~ 440 (815)
.+++|++. ++...+..+|+|+.|++..|.....-......+..|+.|+|++|.+...+ ...+.++.|..|+++.+.
T Consensus 203 ~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg 282 (505)
T KOG3207|consen 203 VLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG 282 (505)
T ss_pred EeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC
Confidence 77777776 34444566777777777777533333334455677778888888777765 556777778888777776
Q ss_pred Ccc--CCcc-----cCCCCCCCEEEecCCCCcccC--cccCCCCCCCeeeccCCcCc
Q 003496 441 GLV--LPPL-----LSGLSSLTELHLTDCNITEIP--ADIGSLSSIVWLALSGNHFE 488 (815)
Q Consensus 441 ~~~--lp~~-----l~~l~~L~~L~Ls~~~l~~lp--~~l~~l~~L~~L~Ls~n~l~ 488 (815)
... .|+. ...+++|++|++..|++.+++ ..+..+++|+.|.+..|.+.
T Consensus 283 i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 283 IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 433 3443 467899999999999998765 34666778888887777664
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.80 E-value=1.8e-09 Score=106.35 Aligned_cols=178 Identities=22% Similarity=0.196 Sum_probs=106.8
Q ss_pred ccccCCCCCCCEEeeCCCcCCCCccHHHhccccCCEEeccCCCccccCchhccCCCCcEEecCC-CCCCCccchhhhccc
Q 003496 328 STSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGD-CSELASLPEKLENLK 406 (815)
Q Consensus 328 p~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~-~~~~~~l~~~l~~l~ 406 (815)
|-.+.-+++|+.+.++.|..-. +-.....-|.|+++.+.++.+...|..+. ...+....... ....+..-..+...+
T Consensus 207 ~f~l~~f~~l~~~~~s~~~~~~-i~~~~~~kptl~t~~v~~s~~~~~~~l~p-e~~~~D~~~~E~~t~~G~~~~~~dTWq 284 (490)
T KOG1259|consen 207 SFNLNAFRNLKTLKFSALSTEN-IVDIELLKPTLQTICVHNTTIQDVPSLLP-ETILADPSGSEPSTSNGSALVSADTWQ 284 (490)
T ss_pred ccchHHhhhhheeeeeccchhh-eeceeecCchhheeeeecccccccccccc-hhhhcCccCCCCCccCCceEEecchHh
Confidence 3334445667777776664321 11111123566777776666553332110 01111111100 001111222333456
Q ss_pred cccccccccccCCCCCchhhhhcccceEEecCCCCccCCcccCCCCCCCEEEecCCCCcccCcccCCCCCCCeeeccCCc
Q 003496 407 SLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNH 486 (815)
Q Consensus 407 ~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~Ls~n~ 486 (815)
.|+.+++++|.+..+.+++.-.+.++.|+++.|....+.. +..+++|+.|+|++|.++++-.+-..+-+.++|.|++|.
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~ 363 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK 363 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh
Confidence 7788888888888887788888888888888887666655 777888888888888877755554556677777888887
Q ss_pred CccCchhhhccCCcceecccccc
Q 003496 487 FERLPTSVKQLSQLRYLHLSNCN 509 (815)
Q Consensus 487 l~~lp~~l~~l~~L~~L~l~~c~ 509 (815)
+.++. +++.+.+|..||+++|+
T Consensus 364 iE~LS-GL~KLYSLvnLDl~~N~ 385 (490)
T KOG1259|consen 364 IETLS-GLRKLYSLVNLDLSSNQ 385 (490)
T ss_pred Hhhhh-hhHhhhhheeccccccc
Confidence 77776 67777788888888775
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.71 E-value=2.6e-09 Score=105.16 Aligned_cols=125 Identities=26% Similarity=0.328 Sum_probs=80.3
Q ss_pred ccCCEEeccCCCccccCchhccCCCCcEEecCCCCCCCccchhhhccccccccccccccCCCCCchhhhhcccceEEecC
Q 003496 359 EHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSG 438 (815)
Q Consensus 359 ~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~ 438 (815)
..|++++|++|.|+.+..++.-+|.++.|+++.|.....- .+..+++|+.|++++|.+..+..+-..+-+++.|.+
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L-- 359 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL-- 359 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh--
Confidence 5678888888888888888888888888888887655432 266677777777777776665554444444444444
Q ss_pred CCCccCCcccCCCCCCCEEEecCCCCcccCcccCCCCCCCeeeccCCcCccCc--hhhhccCCcceecccccc
Q 003496 439 CRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLP--TSVKQLSQLRYLHLSNCN 509 (815)
Q Consensus 439 ~~~~~lp~~l~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~l~~c~ 509 (815)
+.|.+.++ +.++.+-+|..||+++|++..+. .+++++|.|++|.+.+|+
T Consensus 360 ---------------------a~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 360 ---------------------AQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ---------------------hhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 44444332 23445556666666666665443 356667777777777666
No 33
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.67 E-value=5.4e-08 Score=103.60 Aligned_cols=57 Identities=19% Similarity=0.414 Sum_probs=36.3
Q ss_pred HhccccCCEEeccCCCccccCchhccCCCCcEEecCCCCCCCccchhhhccccccccccccc
Q 003496 355 LEKMEHLLEIDLRETAIRNLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFS 416 (815)
Q Consensus 355 l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~ 416 (815)
+..+.+++.|++++|.++.+|. -.++|+.|.+++|..+..+|..+ .++|+.|.+++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 3445677777887777777772 23468888888887777666533 134444444443
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.62 E-value=1.3e-08 Score=96.88 Aligned_cols=125 Identities=21% Similarity=0.175 Sum_probs=41.5
Q ss_pred ccCCceEEEEeCCCCCCccccCcccccCCCCC-CCCcCcceEEeCCCCCCCCCCCCCCccceeeecCCCCcccccccc-c
Q 003496 117 NMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLR-YLPEELRYLHWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGK-K 194 (815)
Q Consensus 117 ~~~~Lr~L~l~~~~l~~~~~~~~~~~l~~~l~-~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~lp~~~-~ 194 (815)
+...+|.|++.+|.++ .+ +++. .+ .+|+.|++++|.++.++..-.+++|++|++++|.|+.+.+++ .
T Consensus 17 n~~~~~~L~L~~n~I~---------~I-e~L~~~l-~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~ 85 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS---------TI-ENLGATL-DKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDK 85 (175)
T ss_dssp -----------------------------S--TT--TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHH
T ss_pred cccccccccccccccc---------cc-cchhhhh-cCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHH
Confidence 4446677777777664 22 2343 23 377788888888777765447778888888888888776554 3
Q ss_pred CCCCccEEecCCCCCCCc--CCCCCCCCCCcEEecCCCCCCCCc---ccccCCCCcccEEecC
Q 003496 195 QAFKLKFIDLHHSQYLTK--IPDLVETPNLERINLLNCTNLPYI---SSSIQNFNNLSVLSLA 252 (815)
Q Consensus 195 ~l~~L~~L~L~~~~~~~~--~p~l~~l~~L~~L~L~~~~~~~~~---~~~l~~l~~L~~L~l~ 252 (815)
.+++|+.|+|++|++... +-.+..+++|+.|++.+|.....- ...+..+++|+.||-.
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 577888888887775332 224556677777777776544221 1123455666666543
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.62 E-value=7.4e-09 Score=104.78 Aligned_cols=176 Identities=20% Similarity=0.176 Sum_probs=95.1
Q ss_pred CCCCCEEeeCCCcCCCCccHH----HhccccCCEEeccCCCccccC--------------chhccCCCCcEEecCCCCCC
Q 003496 334 LKSLCWLELGGCSNLETFPEI----LEKMEHLLEIDLRETAIRNLP--------------SSIEYLEGLRKLDLGDCSEL 395 (815)
Q Consensus 334 l~~L~~L~Ls~~~~~~~~p~~----l~~l~~L~~L~L~~~~l~~lp--------------~~l~~l~~L~~L~L~~~~~~ 395 (815)
.++|++|+||.|......+.. +..+..|++|.|.+|.+.... .-...-+.|+++....|..-
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 345555555555443333222 233445555555555544111 11233445555555554322
Q ss_pred C----ccchhhhccccccccccccccCCCC-----CchhhhhcccceEEecCCCCc-----cCCcccCCCCCCCEEEecC
Q 003496 396 A----SLPEKLENLKSLKYLNAEFSAIGQL-----PSSISDLNQLKKLKFSGCRGL-----VLPPLLSGLSSLTELHLTD 461 (815)
Q Consensus 396 ~----~l~~~l~~l~~L~~L~l~~~~~~~~-----p~~l~~l~~L~~L~l~~~~~~-----~lp~~l~~l~~L~~L~Ls~ 461 (815)
. .+-..+...+.|+.+.+..|.+..- ...+..+++|+.|++.+|... .+...+..+++|+.|++++
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 1 1222344445555555555554322 234555666666666666532 2333456677888888888
Q ss_pred CCCcc-----cCcc-cCCCCCCCeeeccCCcCc-----cCchhhhccCCcceecccccc
Q 003496 462 CNITE-----IPAD-IGSLSSIVWLALSGNHFE-----RLPTSVKQLSQLRYLHLSNCN 509 (815)
Q Consensus 462 ~~l~~-----lp~~-l~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~l~~c~ 509 (815)
|.+.. +-.. -...|+|+.|.+.+|.++ .+-..+...+.|+.|+|++|.
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 87764 1111 234688888888888776 233455667888888888886
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.57 E-value=1e-08 Score=103.79 Aligned_cols=107 Identities=23% Similarity=0.248 Sum_probs=62.7
Q ss_pred ccceEEEecCcccc-----ccchhhhccCCCCEEeccCCcCccc----cccccCCCCCCCEEeeCCCcCCCCccHH----
Q 003496 288 GNIIELRLWNTRIE-----EVPSSIECLTNLETLDLSFCKRLKR----VSTSICKLKSLCWLELGGCSNLETFPEI---- 354 (815)
Q Consensus 288 ~~L~~L~l~~~~i~-----~lp~~l~~l~~L~~L~L~~~~~~~~----lp~~l~~l~~L~~L~Ls~~~~~~~~p~~---- 354 (815)
+.++.+++..|.|. .+-..+..+++|+.|||++|.+... +...+..+++|+.|++++|.....-...
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a 264 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA 264 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence 34455555555443 3445678889999999999887653 4445666788888888888654332221
Q ss_pred H-hccccCCEEeccCCCcc-----ccCchhccCCCCcEEecCCCCC
Q 003496 355 L-EKMEHLLEIDLRETAIR-----NLPSSIEYLEGLRKLDLGDCSE 394 (815)
Q Consensus 355 l-~~l~~L~~L~L~~~~l~-----~lp~~l~~l~~L~~L~L~~~~~ 394 (815)
+ ...++|+.|.+.+|.++ .+-..+...+.|..|+|++|..
T Consensus 265 l~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 265 LKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 2 22456666666666665 1222333345555555555543
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.54 E-value=6.7e-08 Score=91.99 Aligned_cols=105 Identities=27% Similarity=0.358 Sum_probs=36.8
Q ss_pred ccccccccccccCCCCCchhh-hhcccceEEecCCCCccCCcccCCCCCCCEEEecCCCCcccCccc-CCCCCCCeeecc
Q 003496 406 KSLKYLNAEFSAIGQLPSSIS-DLNQLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADI-GSLSSIVWLALS 483 (815)
Q Consensus 406 ~~L~~L~l~~~~~~~~p~~l~-~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~~~l~~lp~~l-~~l~~L~~L~Ls 483 (815)
..++.|++.++.+..+. .++ .+.+|+.|++++|....+. .+..++.|+.|++++|.++.++..+ ..+++|++|+++
T Consensus 19 ~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred ccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 34455555555555442 233 3555666666666655554 3667788888888888888876554 357888888888
Q ss_pred CCcCccCc--hhhhccCCcceeccccccccc
Q 003496 484 GNHFERLP--TSVKQLSQLRYLHLSNCNMLQ 512 (815)
Q Consensus 484 ~n~l~~lp--~~l~~l~~L~~L~l~~c~~L~ 512 (815)
+|++..+. ..+..+++|+.|++.+|+.-.
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 88887443 356778888888888887543
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.32 E-value=1.1e-06 Score=102.23 Aligned_cols=107 Identities=21% Similarity=0.220 Sum_probs=79.5
Q ss_pred cceeeecCCCCccc-ccccccCCCCccEEecCCCCCCCcCC-CCCCCCCCcEEecCCCCCCCCcccccCCCCcccEEecC
Q 003496 175 NLIELNLPYSNVEQ-IWEGKKQAFKLKFIDLHHSQYLTKIP-DLVETPNLERINLLNCTNLPYISSSIQNFNNLSVLSLA 252 (815)
Q Consensus 175 ~L~~L~L~~~~i~~-lp~~~~~l~~L~~L~L~~~~~~~~~p-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~ 252 (815)
.++.|+|+++.+.. +|..+..+++|+.|+|++|.+...+| .++.+++|+.|+|++|...+.+|..++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36778888887775 67778888888888888888777777 57778888888888887777788888888888888888
Q ss_pred CCCCCcccCCccc--CCCCcEEEecCCCCCC
Q 003496 253 GCRSLVSFPRNIY--FRSPIAVDFSDCVNLT 281 (815)
Q Consensus 253 ~~~~l~~lp~~~~--l~~L~~L~l~~~~~l~ 281 (815)
+|.....+|..+. ..++..+++.+|..+.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcccc
Confidence 8777777776654 3455566666665443
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.26 E-value=2.4e-06 Score=99.48 Aligned_cols=106 Identities=25% Similarity=0.256 Sum_probs=81.3
Q ss_pred CCCEEeccCCcCccccccccCCCCCCCEEeeCCCcCCCCccHHHhccccCCEEeccCCCcc-ccCchhccCCCCcEEecC
Q 003496 312 NLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIR-NLPSSIEYLEGLRKLDLG 390 (815)
Q Consensus 312 ~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~L~ 390 (815)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|...+.+|..++.+++|+.|+|++|.+. .+|..++.+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3667788888777778888888888888888888777778877888888888888888776 677778888888888888
Q ss_pred CCCCCCccchhhhcc-cccccccccccc
Q 003496 391 DCSELASLPEKLENL-KSLKYLNAEFSA 417 (815)
Q Consensus 391 ~~~~~~~l~~~l~~l-~~L~~L~l~~~~ 417 (815)
+|...+.+|..+..+ .++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 888777888776653 355666666664
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.21 E-value=1e-06 Score=68.67 Aligned_cols=58 Identities=38% Similarity=0.631 Sum_probs=47.5
Q ss_pred CCCCEEEecCCCCcccC-cccCCCCCCCeeeccCCcCccCch-hhhccCCcceecccccc
Q 003496 452 SSLTELHLTDCNITEIP-ADIGSLSSIVWLALSGNHFERLPT-SVKQLSQLRYLHLSNCN 509 (815)
Q Consensus 452 ~~L~~L~Ls~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~l~~c~ 509 (815)
|+|++|++++|+++.+| ..+..+++|++|++++|.++.+|. .+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 46888888888888877 457888888888888888887764 56888888888888885
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=6.7e-08 Score=95.52 Aligned_cols=62 Identities=23% Similarity=0.278 Sum_probs=42.6
Q ss_pred cceEEEecCcccc--ccchhhhccCCCCEEeccCCcCccccccccCCCCCCCEEeeCCCcCCCC
Q 003496 289 NIIELRLWNTRIE--EVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLET 350 (815)
Q Consensus 289 ~L~~L~l~~~~i~--~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~ 350 (815)
.++++++++..|+ .+..-+..+.+|+.|.|.+..+...+-..+++-.+|+.|+|++|+....
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~ 249 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTE 249 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccch
Confidence 4566666666666 4445567777888888887777777766777777777777777765544
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.19 E-value=1.6e-06 Score=67.55 Aligned_cols=56 Identities=25% Similarity=0.394 Sum_probs=40.5
Q ss_pred CcceEEeCCCCCCCCCCC-C-CCccceeeecCCCCcccccc-cccCCCCccEEecCCCC
Q 003496 153 ELRYLHWHQYSLKTLPLN-F-DPENLIELNLPYSNVEQIWE-GKKQAFKLKFIDLHHSQ 208 (815)
Q Consensus 153 ~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~ 208 (815)
+|++|++++|.++.+|.. | .+++|++|++++|.++.++. .+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 677777777777777753 3 67777777777777777654 56777777777777765
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=4e-08 Score=97.06 Aligned_cols=157 Identities=22% Similarity=0.232 Sum_probs=97.4
Q ss_pred cceeeecCCCCccc--ccccccCCCCccEEecCCCCCCCcCC-CCCCCCCCcEEecCCCCCCCCcc--cccCCCCcccEE
Q 003496 175 NLIELNLPYSNVEQ--IWEGKKQAFKLKFIDLHHSQYLTKIP-DLVETPNLERINLLNCTNLPYIS--SSIQNFNNLSVL 249 (815)
Q Consensus 175 ~L~~L~L~~~~i~~--lp~~~~~l~~L~~L~L~~~~~~~~~p-~l~~l~~L~~L~L~~~~~~~~~~--~~l~~l~~L~~L 249 (815)
.|++|||+.+.|+. +-.-++.+.+|+.|.|.++++...+. .+.+-.+|+.|+++.|....+.. --+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 48888888888875 44456788888888888887665544 47777888888888876554332 224677788888
Q ss_pred ecCCCCCCcccCC-ccc--CCCCcEEEecCCCCCCccCCCcccceEEEecCccccccchhhhccCCCCEEeccCCcCcc-
Q 003496 250 SLAGCRSLVSFPR-NIY--FRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETLDLSFCKRLK- 325 (815)
Q Consensus 250 ~l~~~~~l~~lp~-~~~--l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~- 325 (815)
+++.|......-. .+. -+.|+.|+++|+...-. ...+..-...+++|..|||++|..+.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~-----------------~sh~~tL~~rcp~l~~LDLSD~v~l~~ 328 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ-----------------KSHLSTLVRRCPNLVHLDLSDSVMLKN 328 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh-----------------hhHHHHHHHhCCceeeeccccccccCc
Confidence 8887765433211 111 34555555555542110 11222234567888888888775443
Q ss_pred ccccccCCCCCCCEEeeCCCcCC
Q 003496 326 RVSTSICKLKSLCWLELGGCSNL 348 (815)
Q Consensus 326 ~lp~~l~~l~~L~~L~Ls~~~~~ 348 (815)
.....+.+++.|++|.++.|..+
T Consensus 329 ~~~~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 329 DCFQEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred hHHHHHHhcchheeeehhhhcCC
Confidence 33344566777777777777643
No 44
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.08 E-value=1.7e-05 Score=84.84 Aligned_cols=57 Identities=21% Similarity=0.331 Sum_probs=35.0
Q ss_pred hhccCCCCEEeccCCcCccccccccCCCCCCCEEeeCCCcCCCCccHHHhccccCCEEeccCC
Q 003496 307 IECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRET 369 (815)
Q Consensus 307 l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~ 369 (815)
+..+.+++.|++++| .+..+|. -..+|+.|.+++|..+..+|..+. ++|+.|.+.+|
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence 445677888888877 4555552 234578888887777766665432 34555555544
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.07 E-value=5.4e-07 Score=100.21 Aligned_cols=166 Identities=20% Similarity=0.228 Sum_probs=68.5
Q ss_pred CcceEEeCCCCCCCCCCCC-CCccceeeecCCCCcccccccccCCCCccEEecCCCCCCCcCCCCCCCCCCcEEecCCCC
Q 003496 153 ELRYLHWHQYSLKTLPLNF-DPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVETPNLERINLLNCT 231 (815)
Q Consensus 153 ~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~ 231 (815)
+|.+|++.+|.++.+.... .+.+|++|++++|.|+.+ .++..++.|+.|++++|. +..++.+..+++|+.+++++|.
T Consensus 96 ~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~-i~~~~~~~~l~~L~~l~l~~n~ 173 (414)
T KOG0531|consen 96 SLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNL-ISDISGLESLKSLKLLDLSYNR 173 (414)
T ss_pred ceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccCc-chhccCCccchhhhcccCCcch
Confidence 4444444444444444422 444555555555555544 233444445555555544 2333344444445555554443
Q ss_pred CCCCcc-cccCCCCcccEEecCCCCCCcccCCcccCCCCcEEEecCCCCCC--ccCCCcc-cceEEEecCccccccchhh
Q 003496 232 NLPYIS-SSIQNFNNLSVLSLAGCRSLVSFPRNIYFRSPIAVDFSDCVNLT--EFPLVSG-NIIELRLWNTRIEEVPSSI 307 (815)
Q Consensus 232 ~~~~~~-~~l~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~--~l~~~~~-~L~~L~l~~~~i~~lp~~l 307 (815)
....-+ . +..+.+|+.+.+.++..... ...-.+..+..+++..+.... .++.... .++.+++.++.+..++..+
T Consensus 174 i~~ie~~~-~~~~~~l~~l~l~~n~i~~i-~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~ 251 (414)
T KOG0531|consen 174 IVDIENDE-LSELISLEELDLGGNSIREI-EGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSPEGL 251 (414)
T ss_pred hhhhhhhh-hhhccchHHHhccCCchhcc-cchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccccccccc
Confidence 322111 1 23444444444444322110 000001111111222221111 1111100 2455666666666655555
Q ss_pred hccCCCCEEeccCCc
Q 003496 308 ECLTNLETLDLSFCK 322 (815)
Q Consensus 308 ~~l~~L~~L~L~~~~ 322 (815)
..+.++..|++.++.
T Consensus 252 ~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 252 ENLKNLPVLDLSSNR 266 (414)
T ss_pred cccccccccchhhcc
Confidence 666666666666554
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.02 E-value=1.3e-06 Score=97.28 Aligned_cols=122 Identities=26% Similarity=0.237 Sum_probs=53.8
Q ss_pred ecCccccccchhhhccCCCCEEeccCCcCccccccccCCCCCCCEEeeCCCcCCCCccHHHhccccCCEEeccCCCcccc
Q 003496 295 LWNTRIEEVPSSIECLTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNL 374 (815)
Q Consensus 295 l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~l~~l 374 (815)
+..+.++.+-..+..+++|..|++.++.+.+... .+..+++|++|++++|.....- .+..++.|+.|++.+|.+..+
T Consensus 79 l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~ 155 (414)
T KOG0531|consen 79 LRQNLIAKILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI 155 (414)
T ss_pred cchhhhhhhhcccccccceeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhhheeccCcchhc
Confidence 3333343333334445555555555544332211 1334455555555554433221 133344455555555555544
Q ss_pred CchhccCCCCcEEecCCCCCCCccc-hhhhccccccccccccccCCCC
Q 003496 375 PSSIEYLEGLRKLDLGDCSELASLP-EKLENLKSLKYLNAEFSAIGQL 421 (815)
Q Consensus 375 p~~l~~l~~L~~L~L~~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~ 421 (815)
.. +..+++|+.+++++|.....-+ . ...+.+|+.+.+.+|.+..+
T Consensus 156 ~~-~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 156 SG-LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI 201 (414)
T ss_pred cC-CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc
Confidence 32 2225555555555554333222 1 34455555555555554433
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.96 E-value=3.6e-07 Score=94.76 Aligned_cols=15 Identities=27% Similarity=0.567 Sum_probs=8.6
Q ss_pred cCCCCcEEecCCCCC
Q 003496 380 YLEGLRKLDLGDCSE 394 (815)
Q Consensus 380 ~l~~L~~L~L~~~~~ 394 (815)
+.++|+.|.+.+|+.
T Consensus 318 ~~~~L~~l~l~~c~~ 332 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQ 332 (483)
T ss_pred CCCceEEEeccccch
Confidence 445566666666554
No 48
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.95 E-value=2.5e-07 Score=95.92 Aligned_cols=88 Identities=25% Similarity=0.309 Sum_probs=50.2
Q ss_pred ccCCCCEEeccCCcCcccccc-c-cCCCCCCCEEeeCCCcCCCCcc--HHHhccccCCEEeccCCCcc---ccCchhccC
Q 003496 309 CLTNLETLDLSFCKRLKRVST-S-ICKLKSLCWLELGGCSNLETFP--EILEKMEHLLEIDLRETAIR---NLPSSIEYL 381 (815)
Q Consensus 309 ~l~~L~~L~L~~~~~~~~lp~-~-l~~l~~L~~L~Ls~~~~~~~~p--~~l~~l~~L~~L~L~~~~l~---~lp~~l~~l 381 (815)
.+..|+.|+.++|...+..+- . ..+..+|+.|.+++|+.....- ..-.+.+.|+.+++.++... .+-..-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 466777787777776544332 1 2356777788887777543221 12234566777776666443 222333456
Q ss_pred CCCcEEecCCCCCCC
Q 003496 382 EGLRKLDLGDCSELA 396 (815)
Q Consensus 382 ~~L~~L~L~~~~~~~ 396 (815)
+.|+.|.++.|....
T Consensus 372 ~~lr~lslshce~it 386 (483)
T KOG4341|consen 372 PRLRVLSLSHCELIT 386 (483)
T ss_pred chhccCChhhhhhhh
Confidence 666777666665443
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=5.3e-06 Score=82.41 Aligned_cols=67 Identities=13% Similarity=0.212 Sum_probs=52.7
Q ss_pred CCCCCCEEEecCCCCcccC--cccCCCCCCCeeeccCCcCccCc--hhhhccCCcceecccccccccCCCC
Q 003496 450 GLSSLTELHLTDCNITEIP--ADIGSLSSIVWLALSGNHFERLP--TSVKQLSQLRYLHLSNCNMLQSLPE 516 (815)
Q Consensus 450 ~l~~L~~L~Ls~~~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~l~~c~~L~~lp~ 516 (815)
-+|++..+-+..|.+.... .....++++..|+|+.+++.+.. +.+..+++|..|.+++++...++..
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 4677888888888777633 44667788889999999988543 4678899999999999998887764
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.82 E-value=1e-06 Score=97.16 Aligned_cols=196 Identities=23% Similarity=0.238 Sum_probs=109.6
Q ss_pred hccCCCCEEeccCCcCcccc-ccccCCCCCCCEEeeCCCcCCCCccHHHhcc-ccCCEEeccCCCccccCchh----cc-
Q 003496 308 ECLTNLETLDLSFCKRLKRV-STSICKLKSLCWLELGGCSNLETFPEILEKM-EHLLEIDLRETAIRNLPSSI----EY- 380 (815)
Q Consensus 308 ~~l~~L~~L~L~~~~~~~~l-p~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l-~~L~~L~L~~~~l~~lp~~l----~~- 380 (815)
.-+++++.|.+-.-..-+.. |-.|..+.+|++|.+.+|..... ..+..+ ..|+.|-.. +.+..+-..+ +.
T Consensus 81 d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~ 157 (1096)
T KOG1859|consen 81 DFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICH-NSLDALRHVFASCGGDI 157 (1096)
T ss_pred HHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhh-ccHHHHHHHHHHhcccc
Confidence 34556666665544333322 66788889999999999876541 111111 123333221 1111111100 00
Q ss_pred -----CCCCcEEecCCCCCCCccchhhhccccccccccccccCCCCCchhhhhcccceEEecCCCCccCCcccCCCCCCC
Q 003496 381 -----LEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLSSLT 455 (815)
Q Consensus 381 -----l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~ 455 (815)
...|...+.+. +.+..+..++.-++.|+.|+++.|.+.... .+..++.|+.|+|+.|....+|..-..-..|.
T Consensus 158 ~ns~~Wn~L~~a~fsy-N~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~ 235 (1096)
T KOG1859|consen 158 SNSPVWNKLATASFSY-NRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQ 235 (1096)
T ss_pred ccchhhhhHhhhhcch-hhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhhe
Confidence 11233333332 334555566677777777777777777664 66777777777777777666665333333477
Q ss_pred EEEecCCCCcccCcccCCCCCCCeeeccCCcCccCc--hhhhccCCcceecccccc
Q 003496 456 ELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLP--TSVKQLSQLRYLHLSNCN 509 (815)
Q Consensus 456 ~L~Ls~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~l~~c~ 509 (815)
.|.|+||.++++ .++.++.+|+.||++.|-+.... .-+..|..|+.|.|.+|+
T Consensus 236 ~L~lrnN~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 236 LLNLRNNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred eeeecccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 777777776664 23566777777777777554221 134556677777777776
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.78 E-value=2.5e-05 Score=55.76 Aligned_cols=40 Identities=30% Similarity=0.551 Sum_probs=26.0
Q ss_pred CCCCEEEecCCCCcccCcccCCCCCCCeeeccCCcCccCc
Q 003496 452 SSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLP 491 (815)
Q Consensus 452 ~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 491 (815)
++|++|++++|+++++|..++++++|+.|++++|.++++|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3567777777777777666677777777777777666554
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.74 E-value=1.5e-06 Score=95.92 Aligned_cols=181 Identities=23% Similarity=0.246 Sum_probs=124.7
Q ss_pred chhhhccCCCCEEeccCCcCccccccccCCC-CCCCEEeeCCCcCCCCccHHHhc----------cccCCEEeccCCCcc
Q 003496 304 PSSIECLTNLETLDLSFCKRLKRVSTSICKL-KSLCWLELGGCSNLETFPEILEK----------MEHLLEIDLRETAIR 372 (815)
Q Consensus 304 p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l-~~L~~L~Ls~~~~~~~~p~~l~~----------l~~L~~L~L~~~~l~ 372 (815)
|-.|..+..|+.|.+.+|.+... ..+..+ ..|++|.-.+. +..+-..+.. --.|.+.+.+.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~S--l~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNS--LDALRHVFASCGGDISNSPVWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhcc--HHHHHHHHHHhccccccchhhhhHhhhhcchhhHH
Confidence 56677888999999999876531 111111 13444432221 1111111110 124677788888888
Q ss_pred ccCchhccCCCCcEEecCCCCCCCccchhhhccccccccccccccCCCCCchhhhhcccceEEecCCCCccCCcccCCCC
Q 003496 373 NLPSSIEYLEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKLKFSGCRGLVLPPLLSGLS 452 (815)
Q Consensus 373 ~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~ 452 (815)
.+-.++.-++.|+.|+|+.|+....- .+..++.|+.||+++|.+..+|..-..-..|..|.+++|...++- .+.++.
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~-gie~Lk 254 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLR-GIENLK 254 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhh-hHHhhh
Confidence 88889999999999999998876543 678889999999999999888743322223889999888754443 477889
Q ss_pred CCCEEEecCCCCcccC--cccCCCCCCCeeeccCCcCccCc
Q 003496 453 SLTELHLTDCNITEIP--ADIGSLSSIVWLALSGNHFERLP 491 (815)
Q Consensus 453 ~L~~L~Ls~~~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp 491 (815)
+|+.||++.|-|.+.. ..+..+.+|+.|.|.||.+-.-|
T Consensus 255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 9999999999877632 33567788999999999876555
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=1.3e-05 Score=79.80 Aligned_cols=83 Identities=18% Similarity=0.168 Sum_probs=48.2
Q ss_pred CCccceeeecCCCCccc---ccccccCCCCccEEecCCCCCCCcCCCC-CCCCCCcEEecCCCCCC-CCcccccCCCCcc
Q 003496 172 DPENLIELNLPYSNVEQ---IWEGKKQAFKLKFIDLHHSQYLTKIPDL-VETPNLERINLLNCTNL-PYISSSIQNFNNL 246 (815)
Q Consensus 172 ~l~~L~~L~L~~~~i~~---lp~~~~~l~~L~~L~L~~~~~~~~~p~l-~~l~~L~~L~L~~~~~~-~~~~~~l~~l~~L 246 (815)
...++++|||.+|.|+. +-.-+.+++.|++|+|+.|.+...+..+ ....+|+.|.|.|.... ...-..+..++++
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 45566666666666664 2233466777777777777655444433 34566777777663322 2233445566666
Q ss_pred cEEecCCC
Q 003496 247 SVLSLAGC 254 (815)
Q Consensus 247 ~~L~l~~~ 254 (815)
+.|.++.|
T Consensus 149 telHmS~N 156 (418)
T KOG2982|consen 149 TELHMSDN 156 (418)
T ss_pred hhhhhccc
Confidence 66666665
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.56 E-value=5.5e-05 Score=53.98 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=21.1
Q ss_pred cceeeecCCCCcccccccccCCCCccEEecCCCCC
Q 003496 175 NLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQY 209 (815)
Q Consensus 175 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~ 209 (815)
+|++|++++|+|+.+|..+.++++|++|++++|++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 56666666666666665566666666666666653
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.54 E-value=1.6e-05 Score=92.43 Aligned_cols=128 Identities=22% Similarity=0.205 Sum_probs=86.0
Q ss_pred CcccEEecCCCCCC-cccCCccc--CCCCcEEEecCCCC----CCccCCCcccceEEEecCccccccchhhhccCCCCEE
Q 003496 244 NNLSVLSLAGCRSL-VSFPRNIY--FRSPIAVDFSDCVN----LTEFPLVSGNIIELRLWNTRIEEVPSSIECLTNLETL 316 (815)
Q Consensus 244 ~~L~~L~l~~~~~l-~~lp~~~~--l~~L~~L~l~~~~~----l~~l~~~~~~L~~L~l~~~~i~~lp~~l~~l~~L~~L 316 (815)
.+|++|+++|.... ...|..++ +|+|+.|.+++-.. ...+...+++|..|++++++++.+ .+++++++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 35555555553322 22333344 67777777766332 335667788899999999999988 889999999999
Q ss_pred eccCCcCcc-ccccccCCCCCCCEEeeCCCcCCCCc--c----HHHhccccCCEEeccCCCcc
Q 003496 317 DLSFCKRLK-RVSTSICKLKSLCWLELGGCSNLETF--P----EILEKMEHLLEIDLRETAIR 372 (815)
Q Consensus 317 ~L~~~~~~~-~lp~~l~~l~~L~~L~Ls~~~~~~~~--p----~~l~~l~~L~~L~L~~~~l~ 372 (815)
.+.+-.+.. ..-..+.+|++|+.|++|.-...... . +.-..+|+|+.||.+++.+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 998755443 22335778999999999976554322 1 22234788888888888776
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.52 E-value=8.9e-06 Score=71.68 Aligned_cols=102 Identities=19% Similarity=0.309 Sum_probs=69.5
Q ss_pred ccccccccccCCCCCchh---hhhcccceEEecCCCCccCCcccC-CCCCCCEEEecCCCCcccCcccCCCCCCCeeecc
Q 003496 408 LKYLNAEFSAIGQLPSSI---SDLNQLKKLKFSGCRGLVLPPLLS-GLSSLTELHLTDCNITEIPADIGSLSSIVWLALS 483 (815)
Q Consensus 408 L~~L~l~~~~~~~~p~~l---~~l~~L~~L~l~~~~~~~lp~~l~-~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~Ls 483 (815)
+..++++.|.+..++... .....|...++++|....+|..+. .++.++.|++++|.++++|..+..++.|+.|+++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 444555566555453333 333345555667766666666543 4567888888888888888888888888888888
Q ss_pred CCcCccCchhhhccCCcceecccccc
Q 003496 484 GNHFERLPTSVKQLSQLRYLHLSNCN 509 (815)
Q Consensus 484 ~n~l~~lp~~l~~l~~L~~L~l~~c~ 509 (815)
.|.+...|.-+..|.+|-.|+..++.
T Consensus 109 ~N~l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 109 FNPLNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred cCccccchHHHHHHHhHHHhcCCCCc
Confidence 88888888777777777777776654
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.48 E-value=5.5e-05 Score=88.03 Aligned_cols=149 Identities=19% Similarity=0.221 Sum_probs=86.7
Q ss_pred ccCCEEeccCCCcc--ccCchhc-cCCCCcEEecCCCCCCC-ccchhhhccccccccccccccCCCCCchhhhhcccceE
Q 003496 359 EHLLEIDLRETAIR--NLPSSIE-YLEGLRKLDLGDCSELA-SLPEKLENLKSLKYLNAEFSAIGQLPSSISDLNQLKKL 434 (815)
Q Consensus 359 ~~L~~L~L~~~~l~--~lp~~l~-~l~~L~~L~L~~~~~~~-~l~~~l~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L 434 (815)
.+|+.|++++...- ..|..++ .||+|+.|.+.+-.... .+..-..++++|..||++++++..+ .+++++++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 45666666654322 3333333 36777777776644322 2233345667777777777777766 667777777777
Q ss_pred EecCCCCccCC--cccCCCCCCCEEEecCCCCcccC-------cccCCCCCCCeeeccCCcCc--cCchhhhccCCccee
Q 003496 435 KFSGCRGLVLP--PLLSGLSSLTELHLTDCNITEIP-------ADIGSLSSIVWLALSGNHFE--RLPTSVKQLSQLRYL 503 (815)
Q Consensus 435 ~l~~~~~~~lp--~~l~~l~~L~~L~Ls~~~l~~lp-------~~l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L 503 (815)
.+.+-...... ..+.++.+|+.||+|.......+ +.-..+|.|+.||.|+..+. .+...+..-++|+.+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI 280 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence 77665543322 13556788888888876544322 22244788888888887665 223333445556555
Q ss_pred ccccc
Q 003496 504 HLSNC 508 (815)
Q Consensus 504 ~l~~c 508 (815)
.+-+|
T Consensus 281 ~~~~~ 285 (699)
T KOG3665|consen 281 AALDC 285 (699)
T ss_pred hhhhh
Confidence 54443
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.30 E-value=6.2e-05 Score=74.02 Aligned_cols=142 Identities=18% Similarity=0.193 Sum_probs=76.7
Q ss_pred ccccCCCCccEEecCCCCCCCcCC-----CCCCCCCCcEEecCCCCCCCCccccc-------------CCCCcccEEecC
Q 003496 191 EGKKQAFKLKFIDLHHSQYLTKIP-----DLVETPNLERINLLNCTNLPYISSSI-------------QNFNNLSVLSLA 252 (815)
Q Consensus 191 ~~~~~l~~L~~L~L~~~~~~~~~p-----~l~~l~~L~~L~L~~~~~~~~~~~~l-------------~~l~~L~~L~l~ 252 (815)
..+-++++|+..+||.|.+....| -+++.++|.+|.+.+|..-..--..| .+-+.|++....
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 345567777777777777665554 25667777777777765322111112 123444444443
Q ss_pred CCCCCcccCCcccCCCCcEEEecCCCCCCccCCCcccceEEEecCccccc------cchhhhccCCCCEEeccCCcCccc
Q 003496 253 GCRSLVSFPRNIYFRSPIAVDFSDCVNLTEFPLVSGNIIELRLWNTRIEE------VPSSIECLTNLETLDLSFCKRLKR 326 (815)
Q Consensus 253 ~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~------lp~~l~~l~~L~~L~L~~~~~~~~ 326 (815)
.|..- ..|... +...-....+++.+.+..|.|.. +-..+.++++|+.|||.+|.++..
T Consensus 166 rNRle-ngs~~~---------------~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~ 229 (388)
T COG5238 166 RNRLE-NGSKEL---------------SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLE 229 (388)
T ss_pred cchhc-cCcHHH---------------HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhh
Confidence 33210 000000 00011112356777777777761 122456788899999998876542
Q ss_pred ----cccccCCCCCCCEEeeCCCcCC
Q 003496 327 ----VSTSICKLKSLCWLELGGCSNL 348 (815)
Q Consensus 327 ----lp~~l~~l~~L~~L~Ls~~~~~ 348 (815)
+...++..+.|+.|.+..|-..
T Consensus 230 gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 230 GSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred hHHHHHHHhcccchhhhccccchhhc
Confidence 3334555666777777777544
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.00 E-value=0.0014 Score=62.22 Aligned_cols=107 Identities=17% Similarity=0.116 Sum_probs=66.3
Q ss_pred CCCCCcCcceEEeCCCCCCCCCCCCCCccceeeecCCCCcccccccc-cCCCCccEEecCCCCCCCc--CCCCCCCCCCc
Q 003496 147 LRYLPEELRYLHWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWEGK-KQAFKLKFIDLHHSQYLTK--IPDLVETPNLE 223 (815)
Q Consensus 147 l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~lp~~~-~~l~~L~~L~L~~~~~~~~--~p~l~~l~~L~ 223 (815)
++...+..-.+|++.|.+..++..-.+.+|.+|.+.+|+|+.+-..+ ..+++|+.|.|.+|.+... +-.+..+|.|+
T Consensus 37 lg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 37 LGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE 116 (233)
T ss_pred ccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence 44444566777788887777666557778888888888888775554 4456678888877764322 33456677777
Q ss_pred EEecCCCCCCCCcc---cccCCCCcccEEecCC
Q 003496 224 RINLLNCTNLPYIS---SSIQNFNNLSVLSLAG 253 (815)
Q Consensus 224 ~L~L~~~~~~~~~~---~~l~~l~~L~~L~l~~ 253 (815)
+|.+-+|.....-. -.+..+++|++|++.+
T Consensus 117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 77777765432111 1234455555555544
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.00 E-value=0.0012 Score=62.66 Aligned_cols=122 Identities=16% Similarity=0.194 Sum_probs=82.0
Q ss_pred ceEEeCCCCCCCCCCC-CCCccceeeecCCCCcccccccccCCCCccEEecCCCCCCCcCCCCCC-CCCCcEEecCCCCC
Q 003496 155 RYLHWHQYSLKTLPLN-FDPENLIELNLPYSNVEQIWEGKKQAFKLKFIDLHHSQYLTKIPDLVE-TPNLERINLLNCTN 232 (815)
Q Consensus 155 r~L~l~~~~l~~lp~~-~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~p~l~~-l~~L~~L~L~~~~~ 232 (815)
|.+++.++.+..+-.. ..+.+...+||+.|.+..+ ..+..+++|.+|.|++|++...-|.+.. +++|..|.|.+|..
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred cccccccccccchhhccccccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 4444555443322221 1566778899999988876 4577888999999999998887787764 57899999988754
Q ss_pred CCCcc--cccCCCCcccEEecCCCCCCcccCCc---c-cCCCCcEEEecCCC
Q 003496 233 LPYIS--SSIQNFNNLSVLSLAGCRSLVSFPRN---I-YFRSPIAVDFSDCV 278 (815)
Q Consensus 233 ~~~~~--~~l~~l~~L~~L~l~~~~~l~~lp~~---~-~l~~L~~L~l~~~~ 278 (815)
. .+. .-+..+++|++|.+-+|.....---- + .+++|+.||+++-.
T Consensus 101 ~-~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 101 Q-ELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred h-hhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 3 221 23566788999988887643221111 1 27889999988754
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.99 E-value=0.00022 Score=70.31 Aligned_cols=87 Identities=21% Similarity=0.251 Sum_probs=44.2
Q ss_pred hhccCCCCEEeccCCcCccccc----cccCCCCCCCEEeeCCCcCC---CCcc-------HHHhccccCCEEeccCCCcc
Q 003496 307 IECLTNLETLDLSFCKRLKRVS----TSICKLKSLCWLELGGCSNL---ETFP-------EILEKMEHLLEIDLRETAIR 372 (815)
Q Consensus 307 l~~l~~L~~L~L~~~~~~~~lp----~~l~~l~~L~~L~Ls~~~~~---~~~p-------~~l~~l~~L~~L~L~~~~l~ 372 (815)
+.-+..++.++|++|.+...-. ..|.+-.+|+..+++.-... ..++ ..+-+||.|+..+|+.|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 4446667777777776655433 33444556666665542111 1122 23445566666666666554
Q ss_pred -ccCc----hhccCCCCcEEecCCCC
Q 003496 373 -NLPS----SIEYLEGLRKLDLGDCS 393 (815)
Q Consensus 373 -~lp~----~l~~l~~L~~L~L~~~~ 393 (815)
..|. .+..-+.|..|.+++|.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCC
Confidence 2332 23344555555555554
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.82 E-value=0.00014 Score=64.40 Aligned_cols=64 Identities=22% Similarity=0.461 Sum_probs=27.6
Q ss_pred cccCCEEeccCCCccccCchhcc-CCCCcEEecCCCCCCCccchhhhccccccccccccccCCCCC
Q 003496 358 MEHLLEIDLRETAIRNLPSSIEY-LEGLRKLDLGDCSELASLPEKLENLKSLKYLNAEFSAIGQLP 422 (815)
Q Consensus 358 l~~L~~L~L~~~~l~~lp~~l~~-l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~p 422 (815)
...|...+|++|.+..+|..+.. ++.++.|++.+|. +..+|..+..++.|+.|++++|.+...|
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~l~~~p 116 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNPLNAEP 116 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCccccch
Confidence 33444455555555555544332 2344444444432 2233333444444444444444443333
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.54 E-value=0.0021 Score=63.72 Aligned_cols=106 Identities=24% Similarity=0.280 Sum_probs=71.2
Q ss_pred ccceEEecCCCCccCCcccCCCCCCCEEEecCC--CCcc-cCcccCCCCCCCeeeccCCcCc---cCchhhhccCCccee
Q 003496 430 QLKKLKFSGCRGLVLPPLLSGLSSLTELHLTDC--NITE-IPADIGSLSSIVWLALSGNHFE---RLPTSVKQLSQLRYL 503 (815)
Q Consensus 430 ~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~~--~l~~-lp~~l~~l~~L~~L~Ls~n~l~---~lp~~l~~l~~L~~L 503 (815)
.|+.+++.++...++ ..+..+++|++|.++.| .+.. ++.....+++|++|++++|++. +++ .+..+.+|..|
T Consensus 44 ~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~L 121 (260)
T KOG2739|consen 44 ELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSL 121 (260)
T ss_pred chhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhh
Confidence 344444444433222 23556788999999999 4443 5555566799999999999876 343 46778889999
Q ss_pred cccccccccCC------CCcccccceeccccccccCCCCC
Q 003496 504 HLSNCNMLQSL------PELPIYLVYLEAKNCKRLQTLPE 537 (815)
Q Consensus 504 ~l~~c~~L~~l------p~l~~sL~~L~i~~C~~L~~l~~ 537 (815)
++.+|.-.+-- ..+.++|++|+-.++..-+....
T Consensus 122 dl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea~~~ 161 (260)
T KOG2739|consen 122 DLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEAPEA 161 (260)
T ss_pred hcccCCccccccHHHHHHHHhhhhccccccccCCcccccc
Confidence 99999866511 12567788888877776665543
No 64
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.23 E-value=0.0011 Score=75.81 Aligned_cols=17 Identities=41% Similarity=0.683 Sum_probs=9.2
Q ss_pred cCCCCCCCEEEecCCCC
Q 003496 448 LSGLSSLTELHLTDCNI 464 (815)
Q Consensus 448 l~~l~~L~~L~Ls~~~l 464 (815)
...++.|+.+.|..|..
T Consensus 358 ~~~~~~l~~~~l~~~~~ 374 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCGI 374 (482)
T ss_pred HhcCCCcchhhhhhhhc
Confidence 34455556666655553
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.91 E-value=0.0015 Score=74.47 Aligned_cols=110 Identities=25% Similarity=0.316 Sum_probs=58.2
Q ss_pred ccCCCCEEeccCCcCccc--cccccCCCCCCCEEeeCCC-cCCCCcc----HHHhccccCCEEeccCCC-ccccC--chh
Q 003496 309 CLTNLETLDLSFCKRLKR--VSTSICKLKSLCWLELGGC-SNLETFP----EILEKMEHLLEIDLRETA-IRNLP--SSI 378 (815)
Q Consensus 309 ~l~~L~~L~L~~~~~~~~--lp~~l~~l~~L~~L~Ls~~-~~~~~~p----~~l~~l~~L~~L~L~~~~-l~~lp--~~l 378 (815)
.++.|+.|.+.+|..... +-......++|+.|++++| ......+ .....+++|+.|+++.+. ++... ...
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 356777777777655554 3344556677777777763 2222211 233445666777776665 43221 112
Q ss_pred ccCCCCcEEecCCCCCCC--ccchhhhccccccccccccccC
Q 003496 379 EYLEGLRKLDLGDCSELA--SLPEKLENLKSLKYLNAEFSAI 418 (815)
Q Consensus 379 ~~l~~L~~L~L~~~~~~~--~l~~~l~~l~~L~~L~l~~~~~ 418 (815)
..+++|+.|.+.+|.... .+-.....++.|+.|++++|..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 236677777766666421 1222334456666666665544
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.67 E-value=0.0048 Score=61.22 Aligned_cols=101 Identities=23% Similarity=0.216 Sum_probs=47.8
Q ss_pred CcceEEeCCCCCCCCCCCCCCccceeeecCCC--Cccc-ccccccCCCCccEEecCCCCCC--CcCCCCCCCCCCcEEec
Q 003496 153 ELRYLHWHQYSLKTLPLNFDPENLIELNLPYS--NVEQ-IWEGKKQAFKLKFIDLHHSQYL--TKIPDLVETPNLERINL 227 (815)
Q Consensus 153 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~--~i~~-lp~~~~~l~~L~~L~L~~~~~~--~~~p~l~~l~~L~~L~L 227 (815)
.|..|++.+..++++-..-.+++|+.|.++.| ++.. ++.-...+++|++|++++|++. ..++.+..+.||..|++
T Consensus 44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl 123 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDL 123 (260)
T ss_pred chhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhc
Confidence 33344444443333333224556666666666 3332 3333444466666666666543 22334555566666666
Q ss_pred CCCCCCCCcc---cccCCCCcccEEecCC
Q 003496 228 LNCTNLPYIS---SSIQNFNNLSVLSLAG 253 (815)
Q Consensus 228 ~~~~~~~~~~---~~l~~l~~L~~L~l~~ 253 (815)
.+|..+...- ..+.-+++|++|+-..
T Consensus 124 ~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 124 FNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred ccCCccccccHHHHHHHHhhhhccccccc
Confidence 6655432110 1123345555555443
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.44 E-value=0.0019 Score=64.06 Aligned_cols=99 Identities=25% Similarity=0.216 Sum_probs=69.9
Q ss_pred cCCCCEEeccCCcCccccccccCCCCCCCEEeeCCCcCCCCccHHHhccccCCEEeccCCCccccCc--hhccCCCCcEE
Q 003496 310 LTNLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNLETFPEILEKMEHLLEIDLRETAIRNLPS--SIEYLEGLRKL 387 (815)
Q Consensus 310 l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~l~~lp~--~l~~l~~L~~L 387 (815)
+.+.++|+..+|.+... ....+++.|++|.|+-|..... ..+..+++|++|+|..|.|.++.. .+.++|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 45566666666654321 1133678888888888765543 346788999999999999987753 57889999999
Q ss_pred ecCCCCCCCccch-----hhhccccccccc
Q 003496 388 DLGDCSELASLPE-----KLENLKSLKYLN 412 (815)
Q Consensus 388 ~L~~~~~~~~l~~-----~l~~l~~L~~L~ 412 (815)
.|..|+-.+.-+. .+.-||+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9998887776554 345677777765
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.24 E-value=0.097 Score=47.40 Aligned_cols=105 Identities=23% Similarity=0.317 Sum_probs=52.3
Q ss_pred eccccccccCCceEEEEeCCCCCCccccCcccccCCCCCCCCcCcceEEeCCCCCCCCCCCC--CCccceeeecCCCCcc
Q 003496 110 LDGNVFVNMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNF--DPENLIELNLPYSNVE 187 (815)
Q Consensus 110 l~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~ 187 (815)
+...+|.++.+|+.+.+.. .+ ..++...+.-..+|+.+++..+ +..++... ++..|+.+.+.. .+.
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~---------~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~ 70 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TI---------KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK 70 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T-----------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-
T ss_pred ECHHHHhCCCCCCEEEECC-Ce---------eEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc
Confidence 5567888888888888753 22 2455544333347788887764 66666543 666777777765 555
Q ss_pred cccc-cccCCCCccEEecCCCCCCCcCC--CCCCCCCCcEEecCC
Q 003496 188 QIWE-GKKQAFKLKFIDLHHSQYLTKIP--DLVETPNLERINLLN 229 (815)
Q Consensus 188 ~lp~-~~~~l~~L~~L~L~~~~~~~~~p--~l~~l~~L~~L~L~~ 229 (815)
.++. .+..+++|+.+++..+ ...++ .+... +|+.+.+..
T Consensus 71 ~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 71 SIGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EE-TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 5544 3455777777777653 22222 35555 677766654
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.66 E-value=0.0019 Score=64.09 Aligned_cols=84 Identities=18% Similarity=0.142 Sum_probs=59.8
Q ss_pred cCCceEEEEeCCCCCCccccCcccccCCCCCCCCcCcceEEeCCCCCCCCCCCCCCccceeeecCCCCcccccc--cccC
Q 003496 118 MSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNFDPENLIELNLPYSNVEQIWE--GKKQ 195 (815)
Q Consensus 118 ~~~Lr~L~l~~~~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~lp~--~~~~ 195 (815)
+.+.+.|++.++.++. ..+ ...+| .|.+|.++-|.+++|...-.+++|++|.|+.|.|..+-+ -+++
T Consensus 18 l~~vkKLNcwg~~L~D-------Isi---c~kMp-~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLkn 86 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD-------ISI---CEKMP-LLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKN 86 (388)
T ss_pred HHHhhhhcccCCCccH-------HHH---HHhcc-cceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhc
Confidence 4455666776665531 111 12233 788888888888888776689999999999999998743 5788
Q ss_pred CCCccEEecCCCCCCCc
Q 003496 196 AFKLKFIDLHHSQYLTK 212 (815)
Q Consensus 196 l~~L~~L~L~~~~~~~~ 212 (815)
+++|+.|.|..|.-...
T Consensus 87 lpsLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 87 LPSLRTLWLDENPCCGE 103 (388)
T ss_pred CchhhhHhhccCCcccc
Confidence 89999998888875443
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.97 E-value=0.027 Score=33.35 Aligned_cols=19 Identities=26% Similarity=0.146 Sum_probs=10.0
Q ss_pred ceeeecCCCCccccccccc
Q 003496 176 LIELNLPYSNVEQIWEGKK 194 (815)
Q Consensus 176 L~~L~L~~~~i~~lp~~~~ 194 (815)
|++|+|++|.++.+|.+++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555555443
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.79 E-value=0.025 Score=33.46 Aligned_cols=17 Identities=41% Similarity=0.829 Sum_probs=7.8
Q ss_pred CCeeeccCCcCccCchh
Q 003496 477 IVWLALSGNHFERLPTS 493 (815)
Q Consensus 477 L~~L~Ls~n~l~~lp~~ 493 (815)
|++|+|++|+++.+|.+
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44444444444444443
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.48 E-value=0.088 Score=28.90 Aligned_cols=15 Identities=27% Similarity=0.523 Sum_probs=5.8
Q ss_pred CCCEEEecCCCCccc
Q 003496 453 SLTELHLTDCNITEI 467 (815)
Q Consensus 453 ~L~~L~Ls~~~l~~l 467 (815)
+|+.|+|++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 445555555554443
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.29 E-value=0.086 Score=28.95 Aligned_cols=16 Identities=38% Similarity=0.547 Sum_probs=6.5
Q ss_pred CCCeeeccCCcCccCc
Q 003496 476 SIVWLALSGNHFERLP 491 (815)
Q Consensus 476 ~L~~L~Ls~n~l~~lp 491 (815)
+|+.|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555444
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.61 E-value=0.86 Score=41.08 Aligned_cols=94 Identities=23% Similarity=0.370 Sum_probs=42.6
Q ss_pred CcceEEeCCCCCCCCCCC-C-CCccceeeecCCCCcccccc-cccCCCCccEEecCCCCCCCcCC--CCCCCCCCcEEec
Q 003496 153 ELRYLHWHQYSLKTLPLN-F-DPENLIELNLPYSNVEQIWE-GKKQAFKLKFIDLHHSQYLTKIP--DLVETPNLERINL 227 (815)
Q Consensus 153 ~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~~p--~l~~l~~L~~L~L 227 (815)
+|+.+.+.. .++.++.. | .+.+|+.+.+..+ +..++. .+..+.+|+.+.+..+ ...++ .+..+++|+.+.+
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TTECEEEE
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--cccccccccccccccccccc
Confidence 677777764 45556544 3 5667777777664 666654 3556656777777542 22222 3555677777777
Q ss_pred CCCCCCCCc-ccccCCCCcccEEecCC
Q 003496 228 LNCTNLPYI-SSSIQNFNNLSVLSLAG 253 (815)
Q Consensus 228 ~~~~~~~~~-~~~l~~l~~L~~L~l~~ 253 (815)
..+ ...+ ...+.+. +|+.+.+.+
T Consensus 89 ~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 89 PSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTT---BEEHTTTTTT--T--EEE-TT
T ss_pred Ccc--ccEEchhhhcCC-CceEEEECC
Confidence 542 2222 2334444 666666543
No 75
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=89.59 E-value=0.23 Score=28.38 Aligned_cols=20 Identities=65% Similarity=1.316 Sum_probs=17.6
Q ss_pred cceeeecCCCCccccccccc
Q 003496 175 NLIELNLPYSNVEQIWEGKK 194 (815)
Q Consensus 175 ~L~~L~L~~~~i~~lp~~~~ 194 (815)
+|+.|+|++++++.||++.+
T Consensus 1 ~LVeL~m~~S~lekLW~G~k 20 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGVK 20 (20)
T ss_pred CcEEEECCCCChHHhcCccC
Confidence 58999999999999998753
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=87.85 E-value=0.015 Score=65.13 Aligned_cols=38 Identities=26% Similarity=0.302 Sum_probs=20.7
Q ss_pred CCCcEEecCCCCCCCc----cchhhhccccccccccccccCC
Q 003496 382 EGLRKLDLGDCSELAS----LPEKLENLKSLKYLNAEFSAIG 419 (815)
Q Consensus 382 ~~L~~L~L~~~~~~~~----l~~~l~~l~~L~~L~l~~~~~~ 419 (815)
..|++|++..|..... +...+.....++.++++.|.+.
T Consensus 144 ~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 144 CLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLI 185 (478)
T ss_pred HHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccc
Confidence 3455555555554332 3344455666666777666654
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.82 E-value=0.68 Score=28.52 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=14.0
Q ss_pred CCCCCeeeccCCcCccCchhh
Q 003496 474 LSSIVWLALSGNHFERLPTSV 494 (815)
Q Consensus 474 l~~L~~L~Ls~n~l~~lp~~l 494 (815)
+++|+.|+|++|+++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356777777777777776543
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.82 E-value=0.68 Score=28.52 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=14.0
Q ss_pred CCCCCeeeccCCcCccCchhh
Q 003496 474 LSSIVWLALSGNHFERLPTSV 494 (815)
Q Consensus 474 l~~L~~L~Ls~n~l~~lp~~l 494 (815)
+++|+.|+|++|+++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356777777777777776543
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=81.80 E-value=0.87 Score=28.01 Aligned_cols=19 Identities=32% Similarity=0.447 Sum_probs=11.0
Q ss_pred ccceeeecCCCCccccccc
Q 003496 174 ENLIELNLPYSNVEQIWEG 192 (815)
Q Consensus 174 ~~L~~L~L~~~~i~~lp~~ 192 (815)
++|++|+|++|.|+.+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4556666666666665544
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=81.80 E-value=0.87 Score=28.01 Aligned_cols=19 Identities=32% Similarity=0.447 Sum_probs=11.0
Q ss_pred ccceeeecCCCCccccccc
Q 003496 174 ENLIELNLPYSNVEQIWEG 192 (815)
Q Consensus 174 ~~L~~L~L~~~~i~~lp~~ 192 (815)
++|++|+|++|.|+.+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4556666666666665544
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=81.74 E-value=0.061 Score=52.40 Aligned_cols=85 Identities=15% Similarity=0.196 Sum_probs=54.2
Q ss_pred cccCCceEEEEeCCCCCCccccCcccccCCCCCCCCcCcceEEeCCCCCCCCCCCC-CCccceeeecCCCCccccccccc
Q 003496 116 VNMSNLRFLKFYMPEYKGVPIMSSKVHLDQGLRYLPEELRYLHWHQYSLKTLPLNF-DPENLIELNLPYSNVEQIWEGKK 194 (815)
Q Consensus 116 ~~~~~Lr~L~l~~~~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~lp~~~~ 194 (815)
...+..++|+++.|.+ +.+-..+.-+. .|..|+++.+.++.+|..+ .+..++.+++..|..+.+|.+.+
T Consensus 39 ~~~kr~tvld~~s~r~---------vn~~~n~s~~t-~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~ 108 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRL---------VNLGKNFSILT-RLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQK 108 (326)
T ss_pred hccceeeeehhhhhHH---------HhhccchHHHH-HHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCcccc
Confidence 3445566677666643 23333343343 5666777777777777777 67777777777777777777777
Q ss_pred CCCCccEEecCCCCCC
Q 003496 195 QAFKLKFIDLHHSQYL 210 (815)
Q Consensus 195 ~l~~L~~L~L~~~~~~ 210 (815)
.+++++++++.++.+.
T Consensus 109 k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccCCcchhhhccCcch
Confidence 7777777777666543
No 82
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=79.92 E-value=0.024 Score=63.48 Aligned_cols=69 Identities=30% Similarity=0.299 Sum_probs=34.2
Q ss_pred chhhhccCCCCEEeccCCcCccccc----cccCCC-CCCCEEeeCCCcCCC----CccHHHhccccCCEEeccCCCcc
Q 003496 304 PSSIECLTNLETLDLSFCKRLKRVS----TSICKL-KSLCWLELGGCSNLE----TFPEILEKMEHLLEIDLRETAIR 372 (815)
Q Consensus 304 p~~l~~l~~L~~L~L~~~~~~~~lp----~~l~~l-~~L~~L~Ls~~~~~~----~~p~~l~~l~~L~~L~L~~~~l~ 372 (815)
-..+.....|+.|++++|.+...-- ..+... ..|++|.+..|.... .+...+.....++.++++.|.+.
T Consensus 108 ~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 108 AQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLI 185 (478)
T ss_pred HHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccc
Confidence 3445556677777777766553211 112222 345555555554432 23344444555666666665553
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.70 E-value=0.29 Score=47.01 Aligned_cols=37 Identities=19% Similarity=0.433 Sum_probs=19.1
Q ss_pred CCccEEecCCCCCCCc-CCCCCCCCCCcEEecCCCCCC
Q 003496 197 FKLKFIDLHHSQYLTK-IPDLVETPNLERINLLNCTNL 233 (815)
Q Consensus 197 ~~L~~L~L~~~~~~~~-~p~l~~l~~L~~L~L~~~~~~ 233 (815)
..++.+|.+++.+..+ +..+..++.++.|.+.+|...
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~ 138 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYF 138 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccch
Confidence 3466677776654332 223444555555555555433
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=78.63 E-value=0.043 Score=53.42 Aligned_cols=84 Identities=23% Similarity=0.220 Sum_probs=56.2
Q ss_pred cceEEecCCCCccCCcccCCCCCCCEEEecCCCCcccCcccCCCCCCCeeeccCCcCccCchhhhccCCcceeccccccc
Q 003496 431 LKKLKFSGCRGLVLPPLLSGLSSLTELHLTDCNITEIPADIGSLSSIVWLALSGNHFERLPTSVKQLSQLRYLHLSNCNM 510 (815)
Q Consensus 431 L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~l~~c~~ 510 (815)
.+.|+++.++...+-..++.++.|..|+++.+.+..+|.+++.+..+..+++.+|+.+..|.+.+..+.++++++..++.
T Consensus 44 ~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 44 VTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred eeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCcc
Confidence 33444444444444444555566667777777777777777777777777777777778887778888888888877764
Q ss_pred ccCC
Q 003496 511 LQSL 514 (815)
Q Consensus 511 L~~l 514 (815)
...+
T Consensus 124 ~~~~ 127 (326)
T KOG0473|consen 124 FRKL 127 (326)
T ss_pred hHHH
Confidence 4433
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=73.50 E-value=2.3 Score=26.20 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=10.8
Q ss_pred CcceEEeCCCCCCCCCC
Q 003496 153 ELRYLHWHQYSLKTLPL 169 (815)
Q Consensus 153 ~Lr~L~l~~~~l~~lp~ 169 (815)
.|++|+.++|.++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56666666666666665
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.31 E-value=2.2 Score=41.19 Aligned_cols=37 Identities=22% Similarity=0.290 Sum_probs=18.2
Q ss_pred CCCEEeccCCcCccccccccCCCCCCCEEeeCCCcCC
Q 003496 312 NLETLDLSFCKRLKRVSTSICKLKSLCWLELGGCSNL 348 (815)
Q Consensus 312 ~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~Ls~~~~~ 348 (815)
.++.++-+++.+...--..+..++.++.|.+.+|...
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~ 138 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYF 138 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccch
Confidence 3445555555444443344445555555555555443
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=59.79 E-value=6.5 Score=24.34 Aligned_cols=16 Identities=38% Similarity=0.605 Sum_probs=9.1
Q ss_pred ccceeeecCCCCcccc
Q 003496 174 ENLIELNLPYSNVEQI 189 (815)
Q Consensus 174 ~~L~~L~L~~~~i~~l 189 (815)
.+|++|+|++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4556666666665543
No 88
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=53.45 E-value=6.7 Score=23.46 Aligned_cols=12 Identities=33% Similarity=0.548 Sum_probs=4.7
Q ss_pred CCCEEEecCCCC
Q 003496 453 SLTELHLTDCNI 464 (815)
Q Consensus 453 ~L~~L~Ls~~~l 464 (815)
+|++|+|++|++
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 444445544443
No 89
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=52.81 E-value=8.9 Score=23.51 Aligned_cols=14 Identities=43% Similarity=0.731 Sum_probs=8.1
Q ss_pred CCcceecccccccc
Q 003496 498 SQLRYLHLSNCNML 511 (815)
Q Consensus 498 ~~L~~L~l~~c~~L 511 (815)
++|++|+|++|+.+
T Consensus 2 ~~L~~L~l~~C~~i 15 (26)
T smart00367 2 PNLRELDLSGCTNI 15 (26)
T ss_pred CCCCEeCCCCCCCc
Confidence 45666666666544
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=31.58 E-value=34 Score=21.41 Aligned_cols=14 Identities=36% Similarity=0.359 Sum_probs=9.3
Q ss_pred CCCCeeeccCCcCc
Q 003496 475 SSIVWLALSGNHFE 488 (815)
Q Consensus 475 ~~L~~L~Ls~n~l~ 488 (815)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45677777777664
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=28.71 E-value=2.2e+02 Score=31.64 Aligned_cols=36 Identities=25% Similarity=0.262 Sum_probs=21.7
Q ss_pred CCCEEEecCCCCcccC----cccCCCCCCCeeeccCCcCc
Q 003496 453 SLTELHLTDCNITEIP----ADIGSLSSIVWLALSGNHFE 488 (815)
Q Consensus 453 ~L~~L~Ls~~~l~~lp----~~l~~l~~L~~L~Ls~n~l~ 488 (815)
-++.+.++.|.+..-+ ..+..-+.+.+|++++|...
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcc
Confidence 3566666666655422 22445567777788877654
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=20.82 E-value=45 Score=37.49 Aligned_cols=62 Identities=15% Similarity=0.133 Sum_probs=31.0
Q ss_pred CCCCCCEEEecCCCCccc---CcccCCCCCCCeeeccCC--cCccCchhhh--ccCCcceeccccccccc
Q 003496 450 GLSSLTELHLTDCNITEI---PADIGSLSSIVWLALSGN--HFERLPTSVK--QLSQLRYLHLSNCNMLQ 512 (815)
Q Consensus 450 ~l~~L~~L~Ls~~~l~~l---p~~l~~l~~L~~L~Ls~n--~l~~lp~~l~--~l~~L~~L~l~~c~~L~ 512 (815)
+.+.+..++|++|++..+ ..--...|.|+.|+|++| .+.+.+ ++. ....|++|.+.+|+.-.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCcccc
Confidence 345556666666655442 222334566666666666 332222 121 23346666666666443
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=20.47 E-value=74 Score=35.89 Aligned_cols=34 Identities=35% Similarity=0.411 Sum_probs=16.5
Q ss_pred ccceEEEecCcccccc---chhhhccCCCCEEeccCC
Q 003496 288 GNIIELRLWNTRIEEV---PSSIECLTNLETLDLSFC 321 (815)
Q Consensus 288 ~~L~~L~l~~~~i~~l---p~~l~~l~~L~~L~L~~~ 321 (815)
+.+..+.|++|++..+ .+--...++|+.|+|++|
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 3444455555554432 222234556666666665
Done!