BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003497
(815 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297737338|emb|CBI26539.3| unnamed protein product [Vitis vinifera]
Length = 868
Score = 1240 bits (3209), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 610/801 (76%), Positives = 678/801 (84%), Gaps = 33/801 (4%)
Query: 48 VTSAITHVAVTAVAIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKA 107
V SAIT VAVTAVAIASGACLSTKVDFLWPK EE PG+ I+DGVDVTGY IFND +VQKA
Sbjct: 68 VASAITQVAVTAVAIASGACLSTKVDFLWPKAEELPGSLILDGVDVTGYHIFNDAKVQKA 127
Query: 108 IAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACES 167
IAFA++AHHGQ RKTGDPYLTHCIHTGRILA+L+PSSGKRA+DTVVAGILHDVVDD CES
Sbjct: 128 IAFARKAHHGQLRKTGDPYLTHCIHTGRILAVLVPSSGKRAIDTVVAGILHDVVDDTCES 187
Query: 168 LGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE-------------- 213
L S+EEEFGD+VAKLVAGVSRLSYINQLLRRHRRINVNQG LGHEE
Sbjct: 188 LHSVEEEFGDDVAKLVAGVSRLSYINQLLRRHRRINVNQGILGHEEANNLRVMLLGMVDD 247
Query: 214 -------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAV 266
LADRLHNMRTIYALP KA+AVAQETLLIWCSLASRLGLWALKAELEDLCFAV
Sbjct: 248 PRVVLIKLADRLHNMRTIYALPLPKAQAVAQETLLIWCSLASRLGLWALKAELEDLCFAV 307
Query: 267 LQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSP-PLDER-TASDDESFTTFDEHVLS 324
LQPQ F +MRADLASMWSP NR G RR SSP PL+E+ A D E D V S
Sbjct: 308 LQPQTFLQMRADLASMWSPSNRSGNPRRTAAKDSSPVPLNEKEIAFDYEGSLAVDADVTS 367
Query: 325 MKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKE 384
MKDLLEAV+PFDIL DRRKR FL++L K S+ QKK +VV+DAG+AL SLV CEEALE+E
Sbjct: 368 MKDLLEAVLPFDILLDRRKRINFLNNLGKCSKTQKKPQVVRDAGLALASLVLCEEALERE 427
Query: 385 LLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPA 444
LLISTSY+PGMEVTLSSRLKSLYSI+SKM+RKDVGI+K+YDARALRVVVGDKNGTL GPA
Sbjct: 428 LLISTSYVPGMEVTLSSRLKSLYSIYSKMKRKDVGINKIYDARALRVVVGDKNGTLCGPA 487
Query: 445 IQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHE 504
+QCCY+LL I+HRLW PIDGEFDDYIVNPKPSGYQSLHTAVQGPD S LEVQIRTQ+MHE
Sbjct: 488 VQCCYNLLSIIHRLWTPIDGEFDDYIVNPKPSGYQSLHTAVQGPDNSPLEVQIRTQRMHE 547
Query: 505 YAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMG 564
YAEHGLAAHWLYKET NKL S S +D+S+I+ASS S+D ++ N + D+FQKY SLK G
Sbjct: 548 YAEHGLAAHWLYKETENKLPSTSILDDSEIKASSYFSEDMENQNSVGDDVFQKYGSLKAG 607
Query: 565 HPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYK 624
HPV+RVEGS+LLAAV++RV+K GRELLVAVSFGL ASE VADRR SFQIK WEAYARLYK
Sbjct: 608 HPVLRVEGSHLLAAVVVRVDKDGRELLVAVSFGLVASEAVADRRSSFQIKRWEAYARLYK 667
Query: 625 KASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAV 684
K SDEWW +PGHGDWCTCLEKYTLCRDGMYHK+DQF RLLPTFIQ+ LTE+EESEYWAV
Sbjct: 668 KVSDEWWFEPGHGDWCTCLEKYTLCRDGMYHKEDQFQRLLPTFIQVIDLTEQEESEYWAV 727
Query: 685 VSAVFEGKPVDSVVS--------RRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEA 736
VSA+FEGK + S+ S R SS+ ++ TS+EA+INNKV LLRTML+WEEQLRSEA
Sbjct: 728 VSAIFEGKQIASIESHSNSSFYKRPSSNPISSTSLEANINNKVHLLRTMLQWEEQLRSEA 787
Query: 737 SLRQ--SKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLV 794
+RQ +K+G P SVV GEVVIVCWP+GEIMRLR+GSTAADAA +VGL+GKLVLV
Sbjct: 788 GMRQTKTKVGADPYSTPKSVVLGEVVIVCWPHGEIMRLRTGSTAADAAQRVGLDGKLVLV 847
Query: 795 NGQLVLPNTELKDGDIVEVRV 815
NGQ VLPNT+LKDGD+VEVR+
Sbjct: 848 NGQYVLPNTQLKDGDVVEVRM 868
>gi|357481159|ref|XP_003610865.1| GTP pyrophosphokinase [Medicago truncatula]
gi|355512200|gb|AES93823.1| GTP pyrophosphokinase [Medicago truncatula]
Length = 889
Score = 1190 bits (3079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 600/873 (68%), Positives = 677/873 (77%), Gaps = 63/873 (7%)
Query: 4 LAQKNSP----FPIFFCKFRRNRPKFSCLLDH------ANVIAAAAAAGKAHGAVTSAIT 53
L Q +SP F + KF+ +R +F CLL ANVIAAAA A HGAV SAI
Sbjct: 19 LHQNSSPLLRRFRFRYVKFKPHRSRFRCLLPQIAVQSSANVIAAAAKAASVHGAVYSAIN 78
Query: 54 HVAVTAVAIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKR 113
HVAVTAVAIASGACLSTKVDFLWPK +EQPGT + DGVDVTGYPIF D +VQKAIAFA +
Sbjct: 79 HVAVTAVAIASGACLSTKVDFLWPKPDEQPGTIMQDGVDVTGYPIFTDAKVQKAIAFATK 138
Query: 114 AHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEE 173
AH GQ RKTGDPYL HCIHTGRILA L+PSSGKRAV+T+VAGILHDVVDD C+SL IE
Sbjct: 139 AHLGQIRKTGDPYLAHCIHTGRILAALVPSSGKRAVETIVAGILHDVVDDTCQSLQDIEA 198
Query: 174 EFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE-------------------- 213
EFGD+VA+LVAGVSRLSYINQLLRRHRR+NVNQG LG EE
Sbjct: 199 EFGDDVAELVAGVSRLSYINQLLRRHRRVNVNQGVLGQEEASNLRGMLLGMIDDPRVVLI 258
Query: 214 -LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 272
LADRLHNMRTIYALP KA+AVA+ETL+IWCSLASRLGLWALKAELEDLCFAVLQPQIF
Sbjct: 259 KLADRLHNMRTIYALPMHKAQAVAEETLIIWCSLASRLGLWALKAELEDLCFAVLQPQIF 318
Query: 273 RKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASD--DESFTTFDEHVLSMKDLLE 330
+ MRADLASMWSP R+G S R+ + PL E++++ ++S F+E + SMKDLLE
Sbjct: 319 QSMRADLASMWSPSARIGSSGRLYLKGNLIPLAEKSSTSFYNKSLA-FNEGLCSMKDLLE 377
Query: 331 AVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTS 390
AVVPFD+L DRRKR FL+ +A + E K KVVQDAG+AL SLV CEEALE+EL+IS S
Sbjct: 378 AVVPFDVLLDRRKRANFLYSIANNVETCTKPKVVQDAGLALASLVICEEALERELIISAS 437
Query: 391 YIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYS 450
Y+PGMEVTLSSRLKSLYSI+SKM+RKD I KVYDARALRVVVGDKNG LHGPA+QCCYS
Sbjct: 438 YVPGMEVTLSSRLKSLYSIYSKMKRKDTSIDKVYDARALRVVVGDKNGALHGPAVQCCYS 497
Query: 451 LLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGL 510
LLDIVHRLW PIDGEFDDYI+NPKPSGYQSLHTAV+GPD S LEVQIRTQ+MHEYAEHGL
Sbjct: 498 LLDIVHRLWTPIDGEFDDYIINPKPSGYQSLHTAVEGPDNSPLEVQIRTQRMHEYAEHGL 557
Query: 511 AAHWLYKETGNKLQSISSMDESDIEASSSL----------------------------SK 542
AAHWLYKETGN S+ MD + +ASSS+ SK
Sbjct: 558 AAHWLYKETGNPFSSVDRMDTPETDASSSIDKMDAPETEASSSIDRMDTPETEASSYFSK 617
Query: 543 DTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASE 602
DT+ N D L K SLK GHPV+RVEGS+LLAAVII VE RELLVAVSF LAAS+
Sbjct: 618 DTEAENSSDI-LLSKNKSLKAGHPVLRVEGSHLLAAVIISVENEARELLVAVSFQLAASD 676
Query: 603 VVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGR 662
VADRR FQ K WEAYARLYKK SDEWW +PGHGDWCTCLEKYTLCRDGMYHKQDQFGR
Sbjct: 677 AVADRRSFFQDKRWEAYARLYKKVSDEWWFEPGHGDWCTCLEKYTLCRDGMYHKQDQFGR 736
Query: 663 LLPTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVSRRSSDSVAPTSMEASINNKVRLL 722
LLPTF+Q+ + TE+EESEYW VVSAVFEGK VD + S+ D V TSM+ASINNKV LL
Sbjct: 737 LLPTFVQVINFTEQEESEYWDVVSAVFEGKQVDCIASQSKLDLVPSTSMDASINNKVHLL 796
Query: 723 RTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAA 782
RTML WEEQLRSE ++ Q+K K +G + GEVV++CWPNGEIMRL++GS+A DAA
Sbjct: 797 RTMLSWEEQLRSEVNINQTKHDAKFDGPRGPLNLGEVVVICWPNGEIMRLKAGSSAVDAA 856
Query: 783 MKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 815
+ GLEGKLVL+NG L LPNT+LKDGD++EVR+
Sbjct: 857 QRTGLEGKLVLINGHLALPNTKLKDGDVLEVRI 889
>gi|449483240|ref|XP_004156531.1| PREDICTED: uncharacterized LOC101208449 [Cucumis sativus]
Length = 875
Score = 1169 bits (3024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 578/795 (72%), Positives = 655/795 (82%), Gaps = 27/795 (3%)
Query: 45 HGAVTSAITHVAVTAVAIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQV 104
HGAVTSAITHVAVTAVAIASGACLSTKVDFLWPK+EEQPG+ ++DGVDVTGY IF D +V
Sbjct: 84 HGAVTSAITHVAVTAVAIASGACLSTKVDFLWPKVEEQPGSLVLDGVDVTGYLIFEDTKV 143
Query: 105 QKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDA 164
QKAI FAK+AHHGQ RKTGDPYLTHCIHTG+ILA L+P +G RAVDTVVAGILHD+VDD
Sbjct: 144 QKAIEFAKKAHHGQLRKTGDPYLTHCIHTGKILAALVPPTGNRAVDTVVAGILHDIVDDT 203
Query: 165 CESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE----------- 213
C+ L SIEEEFGDEVAKLVAGVSRLSYINQLLRRHRR+N+N G+LGHEE
Sbjct: 204 CQKLHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVNLNPGSLGHEEANKLRVMLLGM 263
Query: 214 ----------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLC 263
LADRLHNMRTIYALP KA+AVAQETL+IWCSLASRLGLWALKAELEDLC
Sbjct: 264 VDDPRVVLIKLADRLHNMRTIYALPLPKAQAVAQETLVIWCSLASRLGLWALKAELEDLC 323
Query: 264 FAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLD--ERTASDDESFTTFDEH 321
FAVLQPQ+F K+R++LASMW P +R G SR+I+ P LD T + T DE
Sbjct: 324 FAVLQPQMFLKLRSELASMWMPSSRAGSSRKISARADFPSLDSSSSTCCHNMPITVTDE- 382
Query: 322 VLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEAL 381
+MK+LLEAVVPFDIL+DRRKRT +L++L KS +A + KV+Q+A AL +LV CEEAL
Sbjct: 383 ATNMKELLEAVVPFDILADRRKRTSYLNNLQKSIDACIQPKVMQEARNALAALVVCEEAL 442
Query: 382 EKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLH 441
E+EL+IS SY+PGMEVTLSSRLKSLYSI+SKM+RKDV I+KVYD RALRVVVGDKNGTLH
Sbjct: 443 EQELIISVSYVPGMEVTLSSRLKSLYSIYSKMKRKDVSINKVYDTRALRVVVGDKNGTLH 502
Query: 442 GPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQK 501
GPA+QCCYSLL VH+LW PIDGEFDDYIVNPKPSGYQSLHTAV GPD S LEVQIRTQ+
Sbjct: 503 GPAVQCCYSLLHTVHKLWAPIDGEFDDYIVNPKPSGYQSLHTAVLGPDNSPLEVQIRTQR 562
Query: 502 MHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSL 561
MHEYAEHGLAAHWLYKE GNK S+SS D+S+ + S S DT+ N ++ D KY L
Sbjct: 563 MHEYAEHGLAAHWLYKENGNKTPSLSSKDDSERDVSRYFS-DTEFQNSIEDD-SHKYGFL 620
Query: 562 KMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYAR 621
K GHPV+RVEGS+LLAAVIIRV++ GRELLVAVSFGLAASE VADR SFQIK WEAYAR
Sbjct: 621 KAGHPVLRVEGSHLLAAVIIRVDEDGRELLVAVSFGLAASEAVADRSSSFQIKRWEAYAR 680
Query: 622 LYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEY 681
LYKK S+EWWC+PGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQ+ TE+EE EY
Sbjct: 681 LYKKVSEEWWCEPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQVIDFTEQEEFEY 740
Query: 682 WAVVSAVFEGKPVDSVVSRRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEA-SLRQ 740
WA++SA+ EGK +++ SR SS+SVA S +ASIN KVR LRTML+WEEQL EA + RQ
Sbjct: 741 WAIMSAISEGKQIETASSRTSSNSVASISTDASINTKVRFLRTMLQWEEQLLCEAGNFRQ 800
Query: 741 SKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVL 800
+K GG+ S+ EVVIVCWP GEIMRLR+GSTAADAA +VG EG+LVL+NG VL
Sbjct: 801 AKQGGEYYVCRSSITLEEVVIVCWPLGEIMRLRTGSTAADAARRVGSEGRLVLINGLPVL 860
Query: 801 PNTELKDGDIVEVRV 815
PNTELKDGD+VEVRV
Sbjct: 861 PNTELKDGDVVEVRV 875
>gi|225454821|ref|XP_002274363.1| PREDICTED: uncharacterized protein LOC100247726 [Vitis vinifera]
Length = 816
Score = 1120 bits (2898), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 564/799 (70%), Positives = 631/799 (78%), Gaps = 89/799 (11%)
Query: 48 VTSAITHVAVTAVAIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKA 107
V SAIT VAVTAVAIASGACLSTKVDFLWPK EE PG+ I+DGVDVTGY IFND +VQKA
Sbjct: 76 VASAITQVAVTAVAIASGACLSTKVDFLWPKAEELPGSLILDGVDVTGYHIFNDAKVQKA 135
Query: 108 IAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACES 167
IAFA++AHHGQ RKTGDPYLTHCIHTGRILA+L+PSSGKRA+DTVVAGILHDVVDD CES
Sbjct: 136 IAFARKAHHGQLRKTGDPYLTHCIHTGRILAVLVPSSGKRAIDTVVAGILHDVVDDTCES 195
Query: 168 LGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE-------------- 213
L S+EEEFGD+VAKLVAGVSRLSYINQLLRRHRRINVNQG LGHEE
Sbjct: 196 LHSVEEEFGDDVAKLVAGVSRLSYINQLLRRHRRINVNQGILGHEEANNLRVMLLGMVDD 255
Query: 214 -------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAV 266
LADRLHNMRTIYALP KA+AVAQETLLIWCSLASRLGLWALKAELEDLCFAV
Sbjct: 256 PRVVLIKLADRLHNMRTIYALPLPKAQAVAQETLLIWCSLASRLGLWALKAELEDLCFAV 315
Query: 267 LQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMK 326
LQ + E VL
Sbjct: 316 LQDLL------------------------------------------------EAVLPFD 327
Query: 327 DLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELL 386
LL+ + L++ K +K QKK +VV+DAG+AL SLV CEEALE+ELL
Sbjct: 328 ILLDRRKRINFLNNLGKCSK----------TQKKPQVVRDAGLALASLVLCEEALERELL 377
Query: 387 ISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQ 446
ISTSY+PGMEVTLSSRLKSLYSI+SKM+RKDVGI+K+YDARALRVVVGDKNGTL GPA+Q
Sbjct: 378 ISTSYVPGMEVTLSSRLKSLYSIYSKMKRKDVGINKIYDARALRVVVGDKNGTLCGPAVQ 437
Query: 447 CCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYA 506
CCY+LL I+HRLW PIDGEFDDYIVNPKPSGYQSLHTAVQGPD S LEVQIRTQ+MHEYA
Sbjct: 438 CCYNLLSIIHRLWTPIDGEFDDYIVNPKPSGYQSLHTAVQGPDNSPLEVQIRTQRMHEYA 497
Query: 507 EHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHP 566
EHGLAAHWLYKET NKL S S +D+S+I+ASS S+D ++ N + D+FQKY SLK GHP
Sbjct: 498 EHGLAAHWLYKETENKLPSTSILDDSEIKASSYFSEDMENQNSVGDDVFQKYGSLKAGHP 557
Query: 567 VIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKA 626
V+RVEGS+LLAAV++RV+K GRELLVAVSFGL ASE VADRR SFQIK WEAYARLYKK
Sbjct: 558 VLRVEGSHLLAAVVVRVDKDGRELLVAVSFGLVASEAVADRRSSFQIKRWEAYARLYKKV 617
Query: 627 SDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVS 686
SDEWW +PGHGDWCTCLEKYTLCRDGMYHK+DQF RLLPTFIQ+ LTE+EESEYWAVVS
Sbjct: 618 SDEWWFEPGHGDWCTCLEKYTLCRDGMYHKEDQFQRLLPTFIQVIDLTEQEESEYWAVVS 677
Query: 687 AVFEGKPVDSVVS--------RRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASL 738
A+FEGK + S+ S R SS+ ++ TS+EA+INNKV LLRTML+WEEQLRSEA +
Sbjct: 678 AIFEGKQIASIESHSNSSFYKRPSSNPISSTSLEANINNKVHLLRTMLQWEEQLRSEAGM 737
Query: 739 RQ--SKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNG 796
RQ +K+G P SVV GEVVIVCWP+GEIMRLR+GSTAADAA +VGL+GKLVLVNG
Sbjct: 738 RQTKTKVGADPYSTPKSVVLGEVVIVCWPHGEIMRLRTGSTAADAAQRVGLDGKLVLVNG 797
Query: 797 QLVLPNTELKDGDIVEVRV 815
Q VLPNT+LKDGD+VEVR+
Sbjct: 798 QYVLPNTQLKDGDVVEVRM 816
>gi|255557973|ref|XP_002520015.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, putative
[Ricinus communis]
gi|223540779|gb|EEF42339.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, putative
[Ricinus communis]
Length = 806
Score = 1109 bits (2868), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 585/852 (68%), Positives = 657/852 (77%), Gaps = 87/852 (10%)
Query: 4 LAQKNSPF--PIFFCK--FRRN------RPKFSCLLDH-----------------ANVIA 36
QK+SPF FC FR N KF CLLD N+IA
Sbjct: 2 FTQKSSPFLHKFHFCPYYFRFNTINTNHSYKFRCLLDQIPPKFALSSSLSSVFTTGNIIA 61
Query: 37 AAAAAGK---AHGAVTSAITHVAVTAVAIASGACLSTKVDFLWPKLEEQPGTFIVDGVDV 93
AAAAA HGAVTSAIT VAVTAVAIASGACLSTKVDFLWPK+ EQPG F++DGVDV
Sbjct: 62 AAAAASGSASVHGAVTSAITQVAVTAVAIASGACLSTKVDFLWPKVVEQPGCFVLDGVDV 121
Query: 94 TGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVV 153
TG IF+D +VQKAIAFAKRAHHGQFRKTG+PYL+HCIHTGRILAML+PS+GKRAVDTVV
Sbjct: 122 TGCTIFSDGKVQKAIAFAKRAHHGQFRKTGEPYLSHCIHTGRILAMLVPSAGKRAVDTVV 181
Query: 154 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE 213
AGILHDVVDD ESL SIEEEFG++VAKLVAGVSRLSYINQLLRRHRR+ VNQ +LG EE
Sbjct: 182 AGILHDVVDDTQESLQSIEEEFGEDVAKLVAGVSRLSYINQLLRRHRRVTVNQSSLGQEE 241
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-------GLWALKAELEDLCFAV 266
+N+R + + + ++ LA RL L LKA+ AV
Sbjct: 242 A----NNLRVMLL-------GMVDDPRVVLIKLADRLHNMRTIYALPPLKAQ------AV 284
Query: 267 LQPQIFRKMRADLAS---MWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVL 323
Q + + LAS +W+ + + +D F
Sbjct: 285 AQETL--HIWCSLASRLGLWALKAEL---------------------EDLCFAV------ 315
Query: 324 SMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEK 383
++DLLEAVVPFDIL DR+K T FL+ L K+S+AQ++ KVVQDAGIAL SL+ACEEALE+
Sbjct: 316 -LQDLLEAVVPFDILLDRKKGTIFLNSLRKTSDAQRRPKVVQDAGIALASLIACEEALER 374
Query: 384 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 443
ELLISTSY+PGMEVTLSSRLKSLYS+++KM+RKDVGI KVYDARALRVVVGDKNG LHGP
Sbjct: 375 ELLISTSYVPGMEVTLSSRLKSLYSMYTKMKRKDVGIDKVYDARALRVVVGDKNGALHGP 434
Query: 444 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 503
AIQCCYSLLDIVHRLW PIDGEFDDYIVNPKPSGYQSLHTAVQGPD ++LEVQIRTQKMH
Sbjct: 435 AIQCCYSLLDIVHRLWTPIDGEFDDYIVNPKPSGYQSLHTAVQGPDNASLEVQIRTQKMH 494
Query: 504 EYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKM 563
EYAEHGLAAHWLYKETGNKL SISSMDES+ EASS LSKD +DHN + D FQKY SLK+
Sbjct: 495 EYAEHGLAAHWLYKETGNKLPSISSMDESETEASSCLSKDFEDHNSIGEDQFQKYRSLKV 554
Query: 564 GHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLY 623
GHPV+RV+GS+LLAAVIIRV+K GRELLVAV FGLAASE VADRR SF K WEAYARLY
Sbjct: 555 GHPVLRVQGSHLLAAVIIRVDKDGRELLVAVGFGLAASEAVADRRSSFPRKRWEAYARLY 614
Query: 624 KKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWA 683
KK SDEWWC+PGHGDWCTCLEKYTLCRDGMYHKQDQF RLLPTFIQ+ LTE+EESEYWA
Sbjct: 615 KKVSDEWWCEPGHGDWCTCLEKYTLCRDGMYHKQDQFERLLPTFIQVIDLTEQEESEYWA 674
Query: 684 VVSAVFEGKPVDSVVSRRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKL 743
VVSAVFEGKPVDSV SR + DS A ++A INNKVRLLRTMLRWEEQLR+EASL Q K
Sbjct: 675 VVSAVFEGKPVDSVASRPNLDSAASNPIDAGINNKVRLLRTMLRWEEQLRTEASLGQPKY 734
Query: 744 GGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNT 803
K++ DS++ EVVI+CWP+GEIMRLR+GSTAADAA +VGLEGKLVLVNGQLVLP+T
Sbjct: 735 DMKSHYTADSIILSEVVIICWPHGEIMRLRTGSTAADAARRVGLEGKLVLVNGQLVLPST 794
Query: 804 ELKDGDIVEVRV 815
EL DGD+VEVRV
Sbjct: 795 ELSDGDVVEVRV 806
>gi|356495744|ref|XP_003516733.1| PREDICTED: uncharacterized protein LOC100795418 [Glycine max]
Length = 782
Score = 1046 bits (2706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 543/824 (65%), Positives = 618/824 (75%), Gaps = 58/824 (7%)
Query: 5 AQKNSPFPIFFCKFRRNRPKFSCLLDHA---------NVIAAAAAAGKAHGAVTSAITHV 55
AQ NSPF F F+ +R +F CLLD NVIAAAA A H AV+SAIT V
Sbjct: 4 AQNNSPFLRRFRSFKPHRSRFRCLLDQISAPTLLTSDNVIAAAAKAASVHSAVSSAITQV 63
Query: 56 AVTAVAIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAH 115
AVTAVAIASGACLSTK DFLWPKL+EQ GT + DGVDVTGYPIFND +VQKAIAFA++AH
Sbjct: 64 AVTAVAIASGACLSTKFDFLWPKLQEQSGTVMQDGVDVTGYPIFNDAKVQKAIAFARKAH 123
Query: 116 HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEF 175
GQ RKTGDPYLTHCIHTGRILA L+PSSGKRAVDTVVAGILHDVVDD C+SL IE EF
Sbjct: 124 RGQMRKTGDPYLTHCIHTGRILAALVPSSGKRAVDTVVAGILHDVVDDTCQSLRDIEAEF 183
Query: 176 GDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAV 235
GD+V KLVA VSRLSYINQLLRRHRR++VNQG LG EE + N+R + +
Sbjct: 184 GDDVVKLVASVSRLSYINQLLRRHRRVSVNQGVLGQEEAS----NLRVMLL-------GM 232
Query: 236 AQETLLIWCSLASRL----GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGY 291
+ ++ LA RL ++AL L+ + I A +W+ + +
Sbjct: 233 VDDPRVVLIKLADRLHNMRTIYALP--LQKAQAVAEETLIIWCSLASRLGLWALKAEL-- 288
Query: 292 SRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDL 351
+D F ++DLLEAVVPFDIL DRRKR +L +
Sbjct: 289 -------------------EDLCFAV-------LQDLLEAVVPFDILLDRRKRANYLSSI 322
Query: 352 AKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFS 411
+ E K KVVQDAG+AL S+V CEEALE+E++IS SY+PGME+TLSSRLKSLYS++S
Sbjct: 323 GNNLETCTKPKVVQDAGLALASMVICEEALEREMIISASYVPGMEITLSSRLKSLYSLYS 382
Query: 412 KMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIV 471
KM+RKD+ I KVYDARALRVVVGDKNGTLHGPA+QCCYSLLDIVHRLW PIDGEFDDYI+
Sbjct: 383 KMKRKDISIDKVYDARALRVVVGDKNGTLHGPAVQCCYSLLDIVHRLWTPIDGEFDDYII 442
Query: 472 NPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDE 531
NPKPSGYQSLHTAVQGPD S LEVQIRTQ+MHE AE GLAAHWLYKETGN SI SMDE
Sbjct: 443 NPKPSGYQSLHTAVQGPDNSPLEVQIRTQRMHECAEQGLAAHWLYKETGNPFLSIDSMDE 502
Query: 532 SDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELL 591
+ EASS SKD ++ N D L KY SLK GHPV+RVEGS+LLAA+II VE RELL
Sbjct: 503 PETEASSYFSKDLEEGNSSDI-LLSKYKSLKAGHPVLRVEGSHLLAAIIISVENDERELL 561
Query: 592 VAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRD 651
VAVSFGLAASE VADRR SFQIK WEAYARLYKK SDEWW +PGHGDW TCLEKYTLCRD
Sbjct: 562 VAVSFGLAASEAVADRR-SFQIKRWEAYARLYKKVSDEWWFEPGHGDWFTCLEKYTLCRD 620
Query: 652 GMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVSRRSSDSVAPTSM 711
GMYHKQDQFGRLLPTFIQ+ + TE+EESEYWAVVSAVFEG+ VD + SR D VA TS+
Sbjct: 621 GMYHKQDQFGRLLPTFIQVINFTEQEESEYWAVVSAVFEGRQVDWITSRSKFDLVASTSV 680
Query: 712 EASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMR 771
EA INNKV LLRTML WEEQLRSE S Q+K K S+ GEVVI+CWP+GEI+R
Sbjct: 681 EAGINNKVNLLRTMLSWEEQLRSEVSFMQAKHDAKLYDLHGSL--GEVVIICWPHGEILR 738
Query: 772 LRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 815
L++GSTA DAA +VGLEGKLVL+NGQLVLPNT+L+DGD+VEVR+
Sbjct: 739 LKAGSTATDAAQRVGLEGKLVLINGQLVLPNTKLRDGDVVEVRI 782
>gi|356538795|ref|XP_003537886.1| PREDICTED: uncharacterized protein LOC100799181 [Glycine max]
Length = 793
Score = 1023 bits (2645), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/824 (65%), Positives = 621/824 (75%), Gaps = 59/824 (7%)
Query: 5 AQKNSPFPIFFCKFRRNRPKFSCLLDHA---------NVIAAAAAAGKAHGAVTSAITHV 55
AQ SPF F F+ R +F CLLD NVIAAA AA AV+SAIT V
Sbjct: 16 AQNKSPFLRRFRSFKPYRSRFRCLLDQIAAPTLLTSDNVIAAAKAASAHS-AVSSAITQV 74
Query: 56 AVTAVAIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAH 115
AVTA AIASGACLSTKVDFLWPKL+EQPGT ++DGVDVTGYPIF+D +VQKAIAFA++AH
Sbjct: 75 AVTAFAIASGACLSTKVDFLWPKLQEQPGTVMLDGVDVTGYPIFDDAKVQKAIAFARKAH 134
Query: 116 HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEF 175
GQ RKTGDPYLTHCIHTGRILA L+PSSGKRAVDTVVAGILHDVVDD C+SL IE EF
Sbjct: 135 RGQMRKTGDPYLTHCIHTGRILAALVPSSGKRAVDTVVAGILHDVVDDTCQSLRDIEAEF 194
Query: 176 GDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAV 235
GD+V KLVA VSRLSYINQLLRR+RR++VNQG LG EE + N+R + +
Sbjct: 195 GDDVVKLVASVSRLSYINQLLRRNRRVSVNQGVLGQEEAS----NLRVMLL-------GM 243
Query: 236 AQETLLIWCSLASRL----GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGY 291
+ ++ LA RL ++AL L+ + I A +W+ + +
Sbjct: 244 VDDPRVVLIKLADRLHNMRTIYALP--LQKAQAVAEETLIIWCSLASRLGLWALKAEL-- 299
Query: 292 SRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDL 351
+D F ++DLLEAVVPFDIL DRRKR +L +
Sbjct: 300 -------------------EDLCFAV-------LQDLLEAVVPFDILLDRRKRANYLSSI 333
Query: 352 AKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFS 411
+ E KK KVVQ+AG+AL ++V CEEALE+E++IS+SY+PGME+TLSSRLKSLYS++S
Sbjct: 334 GNNLETCKKPKVVQEAGLALATMVICEEALEREMIISSSYVPGMEITLSSRLKSLYSLYS 393
Query: 412 KMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIV 471
KM+RKDV I KVYDARALRVVVGDKNGTLHGPA++CCYSLLDIVHRLW PIDGEFDDYI+
Sbjct: 394 KMKRKDVSIDKVYDARALRVVVGDKNGTLHGPAVRCCYSLLDIVHRLWTPIDGEFDDYII 453
Query: 472 NPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDE 531
NPKPSGYQSLHTAVQGPD S LEVQIRTQ+MHE AEHGLAAHWLYKETGN SI SMDE
Sbjct: 454 NPKPSGYQSLHTAVQGPDNSPLEVQIRTQRMHECAEHGLAAHWLYKETGNPFLSIDSMDE 513
Query: 532 SDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELL 591
+ EASS SK+ ++ N D L KY SLK GHPV+RVEGS+LLAAVII VE RELL
Sbjct: 514 PETEASSYFSKNLEEGNSSDI-LSSKYKSLKAGHPVLRVEGSHLLAAVIISVENDERELL 572
Query: 592 VAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRD 651
VAVSFGLAASE VADRR SFQIK WEAYARLYKK SDEWW +PGHGDW TCLEKYTLCRD
Sbjct: 573 VAVSFGLAASEAVADRR-SFQIKRWEAYARLYKKVSDEWWFEPGHGDWFTCLEKYTLCRD 631
Query: 652 GMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVSRRSSDSVAPTSM 711
GMYHKQDQFGRLLPTFIQ+ + TE+E+SEYWAVVSAVFEG+ VD + SR D VA TS+
Sbjct: 632 GMYHKQDQFGRLLPTFIQVINFTEQEKSEYWAVVSAVFEGRQVDWITSRSKFDLVASTSV 691
Query: 712 EASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMR 771
EA I+NKV LLRTML WEEQLRSE + +Q+K K S+ GEVVI+CWP+GEI+R
Sbjct: 692 EAGIDNKVNLLRTMLSWEEQLRSEVNFKQTKHDVKLYDLHGSL--GEVVIICWPHGEILR 749
Query: 772 LRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 815
L++GSTA DAA +VGLEGKLVL+NGQLVLPNT+LKDGD+VEVR+
Sbjct: 750 LKAGSTATDAAQRVGLEGKLVLINGQLVLPNTKLKDGDVVEVRI 793
>gi|449439043|ref|XP_004137297.1| PREDICTED: uncharacterized protein LOC101208449 [Cucumis sativus]
Length = 706
Score = 986 bits (2548), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/693 (71%), Positives = 562/693 (81%), Gaps = 27/693 (3%)
Query: 147 RAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQ 206
+AVDTVVAGILHD+VDD C+ L SIEEEFGDEVAKLVAGVSRLSYINQLLRRHRR+N+N
Sbjct: 17 QAVDTVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVNLNP 76
Query: 207 GTLGHEE---------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCS 245
G+LGHEE LADRLHNMRTIYALP KA+AVAQETL+IWCS
Sbjct: 77 GSLGHEEANKLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPLPKAQAVAQETLVIWCS 136
Query: 246 LASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLD 305
LASRLGLWALKAELEDLCFAVLQPQ+F K+R++LASMW P +R G SR+I+ P LD
Sbjct: 137 LASRLGLWALKAELEDLCFAVLQPQMFLKLRSELASMWMPSSRAGSSRKISARADFPSLD 196
Query: 306 ER--TASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKV 363
T + T DE +MK+LLEAVVPFDIL+DRRKRT +L++L KS +A + KV
Sbjct: 197 SSSSTCCHNMPITVTDE-ATNMKELLEAVVPFDILADRRKRTSYLNNLQKSIDACIQPKV 255
Query: 364 VQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKV 423
+Q+A AL +LV CEEALE+EL+IS SY+PGMEVTLSSRLKSLYSI+SKM+RKDV I+KV
Sbjct: 256 MQEARNALAALVVCEEALEQELIISVSYVPGMEVTLSSRLKSLYSIYSKMKRKDVSINKV 315
Query: 424 YDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHT 483
YD RALRVVVGDKNGTLHGPA+QCCYSLL VH+LW PIDGEFDDYIVNPKPSGYQSLHT
Sbjct: 316 YDTRALRVVVGDKNGTLHGPAVQCCYSLLHTVHKLWAPIDGEFDDYIVNPKPSGYQSLHT 375
Query: 484 AVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKD 543
AV GPD S LEVQIRTQ+MHEYAEHGLAAHWLYKE GNK S+SS D+S+ + S S D
Sbjct: 376 AVLGPDNSPLEVQIRTQRMHEYAEHGLAAHWLYKENGNKTPSLSSKDDSERDVSRYFS-D 434
Query: 544 TDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEV 603
T+ N ++ D KY LK GHPV+RVEGS+LLAAVIIRV++ GRELLVAVSFGLAASE
Sbjct: 435 TEFQNSIEDD-SHKYGFLKAGHPVLRVEGSHLLAAVIIRVDEDGRELLVAVSFGLAASEA 493
Query: 604 VADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRL 663
VADR SFQIK WEAYARLYKK S+EWWC+PGHGDWCTCLEKYTLCRDGMYHKQDQFGRL
Sbjct: 494 VADRSSSFQIKRWEAYARLYKKVSEEWWCEPGHGDWCTCLEKYTLCRDGMYHKQDQFGRL 553
Query: 664 LPTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVSRRSSDSVAPTSMEASINNKVRLLR 723
LPTFIQ+ TE+EE EYWA++SA+ EGK +++ SR SS+SVA S +ASIN KVR LR
Sbjct: 554 LPTFIQVIDFTEQEEFEYWAIMSAISEGKQIETASSRTSSNSVASISTDASINTKVRFLR 613
Query: 724 TMLRWEEQLRSEA-SLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAA 782
TML+WEEQL EA + RQ+K GG+ S+ EVVIVCWP GEIMRLR+GSTAADAA
Sbjct: 614 TMLQWEEQLLCEAGNFRQAKQGGEYYVCRSSITLEEVVIVCWPLGEIMRLRTGSTAADAA 673
Query: 783 MKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 815
+VG EG+LVL+NG VLPNTELKDGD+VEVRV
Sbjct: 674 RRVGSEGRLVLINGLPVLPNTELKDGDVVEVRV 706
>gi|222623497|gb|EEE57629.1| hypothetical protein OsJ_08040 [Oryza sativa Japonica Group]
Length = 808
Score = 959 bits (2480), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/778 (63%), Positives = 602/778 (77%), Gaps = 24/778 (3%)
Query: 48 VTSAITHVAVTAVAIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKA 107
V S + + VTAVAIASGACLSTKVDFLWP++E+ P T I +GV+VTGYPIF D +VQKA
Sbjct: 45 VASTLAQLTVTAVAIASGACLSTKVDFLWPRIEQLPDTLIFEGVEVTGYPIFEDPKVQKA 104
Query: 108 IAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACES 167
I FA AH GQFRKTGDPY+THCIHTG+ILA L+PS+G+RA++TVVAGILHDV+DD E+
Sbjct: 105 IVFASTAHIGQFRKTGDPYVTHCIHTGKILAALVPSTGERAINTVVAGILHDVIDDTAEN 164
Query: 168 LGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTIYAL 227
L SIEE+FGD+VA LV+GVS+LSYINQLLRRHR+ N TL EE YAL
Sbjct: 165 LKSIEEQFGDDVASLVSGVSKLSYINQLLRRHRQKNTGGSTLTSEEYFS--------YAL 216
Query: 228 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRN 287
P KA AVAQETL +WCSLASRLG+WALKAELEDLCFAVLQP +F+KMR++L +MW+ N
Sbjct: 217 PIRKAEAVAQETLAVWCSLASRLGVWALKAELEDLCFAVLQPHVFKKMRSELTTMWNSTN 276
Query: 288 RVGYSRRITTIVSSPPL---DERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKR 344
+ +RR ++I S P D T S + F+ ++ +MKDLL+AV+PFD+L DR++R
Sbjct: 277 KTKSTRR-SSIRSGLPASTKDVHTTSVHDFFSLSNQEKPNMKDLLQAVLPFDLLLDRKRR 335
Query: 345 TKFLHDLAKSSEAQ-KKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRL 403
+ FL++L SSE K K+V DA +AL SL ACEE LE+ELLISTSYIPGMEVTLSSRL
Sbjct: 336 SYFLNNLHGSSETSVPKPKIVDDAAVALASLAACEEELEQELLISTSYIPGMEVTLSSRL 395
Query: 404 KSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPID 463
KSLYS++ KM+RK VGI ++YDARALRV++GDKNG LHGPA++ CYS+LDIV+RLW PID
Sbjct: 396 KSLYSMYCKMKRKHVGIKQIYDARALRVIIGDKNGALHGPAVKNCYSVLDIVNRLWTPID 455
Query: 464 GEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKL 523
GEFDDYI+NPK SGYQSLHTAVQ D S LEVQIRTQ+MHEYAE+GLAAHWLYKE+ K+
Sbjct: 456 GEFDDYIINPKGSGYQSLHTAVQASDNSPLEVQIRTQRMHEYAEYGLAAHWLYKES--KV 513
Query: 524 QSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRV 583
S +++S S ++D N + + KYSS+KMGHPV+R+EGS LLAAVI+ +
Sbjct: 514 DYRSGTSNKIGQSTSYPSSSSEDENYIQDVMPSKYSSMKMGHPVLRIEGSQLLAAVIVSI 573
Query: 584 EKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCL 643
+KGG+ELLVAVSFGL ASE VA+RR FQ+K WE YAR+YKK S++WWC PGHGDW T L
Sbjct: 574 DKGGKELLVAVSFGLEASEAVAERRSCFQLKRWETYARVYKKVSEKWWCAPGHGDWSTNL 633
Query: 644 EKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGK------PVDSV 697
EKYTLC+DG++HKQDQFGRLLPTFIQ+ LTEEEE EYW VVSA+FEGK P S
Sbjct: 634 EKYTLCQDGIFHKQDQFGRLLPTFIQLIDLTEEEEEEYWMVVSAIFEGKEASSLTPDSSN 693
Query: 698 VSRRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPG 757
R +S+ + T + INNKV LLRTML+WEEQ+R ASL + L P +
Sbjct: 694 TERSTSEPPSSTPLSDPINNKVHLLRTMLQWEEQVRRGASLVEKSLSVGTCTEP---ILR 750
Query: 758 EVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 815
EV I+CWP G+IMR+ GSTAADAA ++G+EGKL+ VNGQLVLP TELKDGDIVEVR+
Sbjct: 751 EVAIICWPYGKIMRMSLGSTAADAARRMGVEGKLLWVNGQLVLPQTELKDGDIVEVRM 808
>gi|218191410|gb|EEC73837.1| hypothetical protein OsI_08580 [Oryza sativa Indica Group]
Length = 847
Score = 959 bits (2478), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/825 (61%), Positives = 620/825 (75%), Gaps = 43/825 (5%)
Query: 20 RNRPKFSCLLDH-ANVIAAAAAA------------------GKAHGAVTSAITHVAVTAV 60
R R + C+L+H A +A A+AA G H AV S + + VTAV
Sbjct: 37 RARMRLGCVLEHVAPRLAVASAALLGAGEVIAAAAAAGKGGGAGHAAVASTLAQLTVTAV 96
Query: 61 AIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFR 120
AIASGACLSTKVDFLWP++E+ P T I +GV+VTGYPIF D +VQKAI FA AH GQFR
Sbjct: 97 AIASGACLSTKVDFLWPRIEQLPDTLIFEGVEVTGYPIFEDPKVQKAIVFASTAHIGQFR 156
Query: 121 KTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVA 180
KTGDPY+THCIHTG+ILA L+PS+G+RA++TVVAGILHDV+DD E+L SIEE+FGD+VA
Sbjct: 157 KTGDPYVTHCIHTGKILAALVPSTGERAINTVVAGILHDVIDDTAENLKSIEEQFGDDVA 216
Query: 181 KLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETL 240
LV+GVS+LSYINQLLRRHR+ N TL EE YALP KA AVAQETL
Sbjct: 217 SLVSGVSKLSYINQLLRRHRQKNTGGSTLTSEEYFS--------YALPIRKAEAVAQETL 268
Query: 241 LIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVS 300
+WCSLASRLG+WALKAELEDLCFAVLQP +F+KMR++L +MW+ N+ +RR ++I S
Sbjct: 269 AVWCSLASRLGVWALKAELEDLCFAVLQPHVFKKMRSELTTMWNSTNKTKSTRR-SSIRS 327
Query: 301 SPPL---DERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEA 357
P D T S + F+ ++ +MKDLL+AV+PFD+L DR++R+ FL++L SSE
Sbjct: 328 GLPASTKDVHTTSVHDFFSLSNQEKPNMKDLLQAVLPFDLLLDRKRRSYFLNNLHGSSET 387
Query: 358 Q-KKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRK 416
K K+V DA +AL SL ACEE LE+ELLISTSYIPGMEVTLSSRLKSLYS++ KM+RK
Sbjct: 388 SVPKPKIVDDAAVALASLAACEEELEQELLISTSYIPGMEVTLSSRLKSLYSMYCKMKRK 447
Query: 417 DVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPS 476
VGI ++YDARALRV++GDKNG LHGPA++ CYS+LDIV+RLW PIDGEFDDYI+NPK S
Sbjct: 448 HVGIKQIYDARALRVIIGDKNGALHGPAVKNCYSVLDIVNRLWTPIDGEFDDYIINPKGS 507
Query: 477 GYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEA 536
GYQSLHTAVQ D S LEVQIRTQ+MHEYAE+GLAAHWLYKE+ K+ S ++
Sbjct: 508 GYQSLHTAVQASDNSPLEVQIRTQRMHEYAEYGLAAHWLYKES--KVDYRSGTSNKIGQS 565
Query: 537 SSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSF 596
+S S ++D + + + KYSS+KMGHPV+R+EGS LLAAVI+ ++KGG+ELLVAVSF
Sbjct: 566 TSYPSSSSEDESYIQDVMPSKYSSMKMGHPVLRIEGSQLLAAVIVSIDKGGKELLVAVSF 625
Query: 597 GLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHK 656
GL ASE VA+RR FQ+K WE YAR+YKK S++WWC PGHGDW T LEKYTLC+DG++HK
Sbjct: 626 GLEASEAVAERRSCFQLKRWETYARVYKKVSEKWWCAPGHGDWSTNLEKYTLCQDGIFHK 685
Query: 657 QDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGK------PVDSVVSRRSSDSVAPTS 710
QDQFGRLLPTFIQ+ LTEEEE EYW VVSA+FEGK P S R +S+ + T
Sbjct: 686 QDQFGRLLPTFIQLIDLTEEEEEEYWMVVSAIFEGKEASSLTPDSSNTERSTSEPPSSTP 745
Query: 711 MEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIM 770
+ INNKV LLRTML+WEEQ+R ASL + L P + EV I+CWP G+IM
Sbjct: 746 LSDPINNKVHLLRTMLQWEEQVRRGASLAEKSLSVGTCTEP---ILREVAIICWPYGKIM 802
Query: 771 RLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 815
R+ GSTAADAA ++G+EGKL+ VNGQLVLP TELKDGDIVEVR+
Sbjct: 803 RMSLGSTAADAARRMGVEGKLLWVNGQLVLPQTELKDGDIVEVRM 847
>gi|242066290|ref|XP_002454434.1| hypothetical protein SORBIDRAFT_04g030900 [Sorghum bicolor]
gi|241934265|gb|EES07410.1| hypothetical protein SORBIDRAFT_04g030900 [Sorghum bicolor]
Length = 878
Score = 957 bits (2474), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/796 (63%), Positives = 613/796 (77%), Gaps = 35/796 (4%)
Query: 50 SAITHVAVTAVAIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIA 109
S + VAVTAVAIASGACLSTKVDFLWP++E+ P T I +GV+VTGY IF D +VQKAI
Sbjct: 88 STLAQVAVTAVAIASGACLSTKVDFLWPRIEQLPDTLIFEGVEVTGYQIFEDPKVQKAIE 147
Query: 110 FAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLG 169
FA AH GQFR+TGDPY+THCIHTG+ILA L+PS+G+RAV+TVVAGILHDVV D ESL
Sbjct: 148 FASTAHLGQFRRTGDPYVTHCIHTGKILAALVPSTGERAVNTVVAGILHDVVCDTSESLK 207
Query: 170 SIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE---------------- 213
SIEE+FGD+VA LV+GVS+LSYINQLLRRHR+ N TL EE
Sbjct: 208 SIEEQFGDDVASLVSGVSKLSYINQLLRRHRQKNTGGSTLTSEEANNLRVMLLGMVDDPR 267
Query: 214 -----LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQ 268
LADRLHNMRTIYALP KA AVAQETL +WCSLASRLG+WALKAELEDLCFAVLQ
Sbjct: 268 VVLIKLADRLHNMRTIYALPVPKAEAVAQETLAVWCSLASRLGVWALKAELEDLCFAVLQ 327
Query: 269 PQIFRKMRADLASMWSPRNRVGYSRR--ITTIVSSPPLDERTASDDESFTTFDEHVLSMK 326
PQ+F+K+R++L MWS + RR I + + D S ++ F++ ++ +MK
Sbjct: 328 PQVFKKIRSELTLMWSRTGKSKNMRRSSIRNELLASMKDGHMTSINDLFSSCNQEKPNMK 387
Query: 327 DLLEAVVPFDILSDRRKRTKFLHDLAKSS-EAQKKAKVVQDAGIALTSLVACEEALEKEL 385
DLL+AV+PFDI DR++R+ FL +L +S E+ K+V DA +AL SL +CEE LE+EL
Sbjct: 388 DLLQAVLPFDIFLDRKRRSYFLRNLNNNSGESIPNPKIVDDAAVALASLASCEEELEREL 447
Query: 386 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 445
LISTSYIPGMEVTLSSRLKSLYSI+ KM+RKD G+ +VYDARALRV+VGDKNG +HGPA+
Sbjct: 448 LISTSYIPGMEVTLSSRLKSLYSIYCKMKRKDKGLRQVYDARALRVIVGDKNGAMHGPAV 507
Query: 446 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 505
+ CYS+LDIVHRLW PIDGEFDDYI+NPK SGY+SLHTAVQ D S LEVQIRTQ+MHEY
Sbjct: 508 RSCYSILDIVHRLWTPIDGEFDDYIINPKGSGYRSLHTAVQASDSSPLEVQIRTQRMHEY 567
Query: 506 AEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGH 565
AEHGLAAHWLYKE+ K++ SSM + +++S S ++D + + D+ KYSS+K+GH
Sbjct: 568 AEHGLAAHWLYKES--KVEYRSSMSKRIRQSTSYSSSSSEDESSIQDDIPSKYSSIKVGH 625
Query: 566 PVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKK 625
PV+R+EG +LLAAVI+ ++KGG+EL+VAVSF L ASE VA+ R SFQ+K WEAYARL+KK
Sbjct: 626 PVLRIEGCDLLAAVIVSIDKGGKELIVAVSFSLEASEAVAELRSSFQLKRWEAYARLHKK 685
Query: 626 ASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVV 685
S++WWC PGHGDW T LE+YTLC+DG++HKQDQFGRLLPTF+QI LTEEEE EYW VV
Sbjct: 686 VSEKWWCAPGHGDWSTNLERYTLCQDGIFHKQDQFGRLLPTFLQIIDLTEEEEEEYWMVV 745
Query: 686 SAVFEGKPVDSVVSRRS-SDSVAPTSMEAS-----INNKVRLLRTMLRWEEQLRSEASLR 739
SA+FEGK S+ S S +D + ++ INNKV LLRTML+WEEQ+R ASL
Sbjct: 746 SAIFEGKETCSLPSESSYADKSSSEPPSSTPLSDPINNKVHLLRTMLQWEEQVRRGASLA 805
Query: 740 QSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLV 799
+ LG P + EV I+ WPNG+IMR+ +GSTAADAA ++G+EGKL+ VNGQ+V
Sbjct: 806 EKSLGVNTCTKP---ILREVAIIFWPNGKIMRMSTGSTAADAARRMGVEGKLLWVNGQVV 862
Query: 800 LPNTELKDGDIVEVRV 815
LP TELKDGDIVEVRV
Sbjct: 863 LPQTELKDGDIVEVRV 878
>gi|413923562|gb|AFW63494.1| hypothetical protein ZEAMMB73_341215 [Zea mays]
Length = 877
Score = 949 bits (2454), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/801 (62%), Positives = 612/801 (76%), Gaps = 41/801 (5%)
Query: 48 VTSAITHVAVTAVAIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKA 107
V S + VAVTAVAIASGACLSTKVDFLWP++++ P T I +GV+VTGY IF D +VQKA
Sbjct: 85 VASTLAQVAVTAVAIASGACLSTKVDFLWPRIDQLPDTLIFEGVEVTGYQIFEDPKVQKA 144
Query: 108 IAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACES 167
I FA AH GQFR+TGDPY+THCIHTG+ILA L+PS+G+RAV+T+VAGILHDVV D ES
Sbjct: 145 IEFASTAHLGQFRRTGDPYITHCIHTGKILAALVPSTGERAVNTIVAGILHDVVCDTSES 204
Query: 168 LGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE-------------- 213
L SIEE+FG +VA LV+GVS+LSYINQLLRRHR+ N TL EE
Sbjct: 205 LKSIEEQFGADVASLVSGVSKLSYINQLLRRHRQKNTGGSTLTSEEANNLRVMLLGMVDD 264
Query: 214 -------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAV 266
LADRLHNMRTIYALP KA AVAQETL +WCSLASRLG+WALKAELEDLCFAV
Sbjct: 265 PRVVLIKLADRLHNMRTIYALPVPKAEAVAQETLAVWCSLASRLGVWALKAELEDLCFAV 324
Query: 267 LQPQIFRKMRADLASMWSPRNRVGYSRR-----ITTIVSSPPLDERTASDDESFTTFDEH 321
LQPQIF+K++++L MW NR G S+ I + + D S ++ F++ ++
Sbjct: 325 LQPQIFKKIQSELTLMW---NRTGKSKNMRRSSIRNELLASMKDGNMVSINDLFSSCNQE 381
Query: 322 VLSMKDLLEAVVPFDILSDRRKRTKFLHDL-AKSSEAQKKAKVVQDAGIALTSLVACEEA 380
+MKDLL+AV+PFDI DR++R+ FL +L + S E+ K+V DA +AL SL +CEE
Sbjct: 382 RPNMKDLLQAVLPFDIFLDRKRRSYFLSNLNSNSGESIPNPKIVDDAAVALASLASCEEE 441
Query: 381 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 440
LE+ELLISTSYIPGMEVTLSSRLKSLYSI+ KM+RK+VGI +VYDARALRV+VGDKNG +
Sbjct: 442 LERELLISTSYIPGMEVTLSSRLKSLYSIYCKMKRKEVGIRQVYDARALRVIVGDKNGAM 501
Query: 441 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 500
HG A++ CYS+LDIVHRLW PIDGEFDDYI+NPK SGYQSLHTAVQ D S LEVQIRTQ
Sbjct: 502 HGSAVRSCYSILDIVHRLWTPIDGEFDDYIINPKGSGYQSLHTAVQASDSSPLEVQIRTQ 561
Query: 501 KMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSS 560
+MHEYAEHGLAAHWLYKE+ K++ SSM + +++S S ++D + + D+ KYSS
Sbjct: 562 RMHEYAEHGLAAHWLYKES--KVEYRSSMSKRIRQSTSYSSSSSEDESSVQDDIPSKYSS 619
Query: 561 LKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYA 620
+K+GHPV+R+EGS+LLAAV++ ++KGG+EL+VAVSF L ASE VA+ R SFQ+K WEAYA
Sbjct: 620 MKVGHPVLRIEGSHLLAAVVVSIDKGGKELIVAVSFSLEASEAVAELRSSFQLKRWEAYA 679
Query: 621 RLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESE 680
RL+KK S++WWC PGHGDW T LE+YTLC+DG++HKQDQFGRLLPTFIQI L EEEE E
Sbjct: 680 RLHKKVSEKWWCAPGHGDWSTNLERYTLCQDGIFHKQDQFGRLLPTFIQIIDLAEEEEEE 739
Query: 681 YWAVVSAVFEGKPVDSVVSRRS-SDSVAPTSMEAS-----INNKVRLLRTMLRWEEQLRS 734
YW VVSA+FEGK S+ S S +D + ++ INNKV LLRTML+WEEQ+R
Sbjct: 740 YWMVVSAIFEGKETCSLPSESSYADKSSSEPPSSTPLSDPINNKVHLLRTMLQWEEQVRR 799
Query: 735 EASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLV 794
ASL + L + EV I+ WPNG+IMR+ +GSTAADAA ++G+EGKL+ V
Sbjct: 800 GASLAEKSLSASIC---TKAILREVAIIFWPNGKIMRMSTGSTAADAARRMGVEGKLLWV 856
Query: 795 NGQLVLPNTELKDGDIVEVRV 815
NGQLVLP TELKDGDIVEVRV
Sbjct: 857 NGQLVLPQTELKDGDIVEVRV 877
>gi|297599793|ref|NP_001047830.2| Os02g0699400 [Oryza sativa Japonica Group]
gi|255671187|dbj|BAF09744.2| Os02g0699400 [Oryza sativa Japonica Group]
Length = 868
Score = 936 bits (2419), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/838 (59%), Positives = 619/838 (73%), Gaps = 48/838 (5%)
Query: 20 RNRPKFSCLLDH-ANVIAAAAAA------------------GKAHGAVTSAITHVAVTAV 60
R R + C+L+H A +A A+AA G H AV S + + VTAV
Sbjct: 37 RARMRLGCVLEHVAPRLAVASAALLGAGEVIAAAAAAGKSGGAGHAAVASTLAQLTVTAV 96
Query: 61 AIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFR 120
AIASGACLSTKVDFLWP++E+ P T I +GV+VTGYPIF D +VQKAI FA AH GQFR
Sbjct: 97 AIASGACLSTKVDFLWPRIEQLPDTLIFEGVEVTGYPIFEDPKVQKAIVFASTAHIGQFR 156
Query: 121 KTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVA 180
KTGDPY+THCIHTG+ILA L+PS+G+RA++TVVAGILHDV+DD E+L SIEE+FGD+VA
Sbjct: 157 KTGDPYVTHCIHTGKILAALVPSTGERAINTVVAGILHDVIDDTAENLKSIEEQFGDDVA 216
Query: 181 KLVAGVSRLSYINQLLRRHRRI--------NVNQGTLGHEELADRLHNMRTI-----YAL 227
LV+GVS+LSYINQ++ + +++ T L + + + YAL
Sbjct: 217 SLVSGVSKLSYINQVMHMLEKTLLSADYCAGIDKKTPVEALLLQKKYVLFYASKYFSYAL 276
Query: 228 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRN 287
P KA AVAQETL +WCSLASRLG+WALKAELEDLCFAVLQP +F+KMR++L +MW+ N
Sbjct: 277 PIRKAEAVAQETLAVWCSLASRLGVWALKAELEDLCFAVLQPHVFKKMRSELTTMWNSTN 336
Query: 288 RVGYSRRITTIVSSPPL---DERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKR 344
+ +RR ++I S P D T S + F+ ++ +MKDLL+AV+PFD+L DR++R
Sbjct: 337 KTKSTRR-SSIRSGLPASTKDVHTTSVHDFFSLSNQEKPNMKDLLQAVLPFDLLLDRKRR 395
Query: 345 TKFLHDLAKSSEAQ-KKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRL 403
+ FL++L SSE K K+V DA +AL SL ACEE LE+ELLISTSYIPGMEVTLSSRL
Sbjct: 396 SYFLNNLHGSSETSVPKPKIVDDAAVALASLAACEEELEQELLISTSYIPGMEVTLSSRL 455
Query: 404 KSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPID 463
KSLYS++ KM+RK VGI ++YDARALRV++GDKNG LHGPA++ CYS+LDIV+RLW PID
Sbjct: 456 KSLYSMYCKMKRKHVGIKQIYDARALRVIIGDKNGALHGPAVKNCYSVLDIVNRLWTPID 515
Query: 464 GEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKL 523
GEFDDYI+NPK SGYQSLHTAVQ D S LEVQIRTQ+MHEYAE+GLAAHWLYKE+ K+
Sbjct: 516 GEFDDYIINPKGSGYQSLHTAVQASDNSPLEVQIRTQRMHEYAEYGLAAHWLYKES--KV 573
Query: 524 QSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRV 583
S +++S S ++D N + + KYSS+KMGHPV+R+EGS LLAAVI+ +
Sbjct: 574 DYRSGTSNKIGQSTSYPSSSSEDENYIQDVMPSKYSSMKMGHPVLRIEGSQLLAAVIVSI 633
Query: 584 EKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCL 643
+KGG+ELLVAVSFGL ASE VA+RR FQ+K WE YAR+YKK S++WWC PGHGDW T L
Sbjct: 634 DKGGKELLVAVSFGLEASEAVAERRSCFQLKRWETYARVYKKVSEKWWCAPGHGDWSTNL 693
Query: 644 EKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGK------PVDSV 697
EKYTLC+DG++HKQDQFGRLLPTFIQ+ LTEEEE EYW VVSA+FEGK P S
Sbjct: 694 EKYTLCQDGIFHKQDQFGRLLPTFIQLIDLTEEEEEEYWMVVSAIFEGKEASSLTPDSSN 753
Query: 698 VSRRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPG 757
R +S+ + T + INNKV LLRTML+WEEQ+R ASL + L P +
Sbjct: 754 TERSTSEPPSSTPLSDPINNKVHLLRTMLQWEEQVRRGASLVEKSLSVGTCTEP---ILR 810
Query: 758 EVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 815
EV I+CWP G+IMR+ GSTAADAA ++G+EGKL+ VNGQLVLP TELKDGDIVEVR+
Sbjct: 811 EVAIICWPYGKIMRMSLGSTAADAARRMGVEGKLLWVNGQLVLPQTELKDGDIVEVRM 868
>gi|357137144|ref|XP_003570161.1| PREDICTED: uncharacterized protein LOC100839209 [Brachypodium
distachyon]
Length = 812
Score = 865 bits (2235), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/779 (57%), Positives = 562/779 (72%), Gaps = 58/779 (7%)
Query: 45 HGAVTSAITHVAVTAVAIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQV 104
H AV S I +AV+AVAIASGACLSTKVDFLWP++E+ P T + +GV+VTGY IF D +V
Sbjct: 82 HAAVASTIAQLAVSAVAIASGACLSTKVDFLWPRIEQLPDTLVFEGVEVTGYQIFEDPKV 141
Query: 105 QKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDA 164
QKAI FA AH GQFR+TGDPY+THCIHTG+ILA L+PS+G+RA++TVVAGILHDV+DD
Sbjct: 142 QKAIVFASTAHFGQFRRTGDPYVTHCIHTGKILAALVPSTGERAINTVVAGILHDVIDDT 201
Query: 165 CESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTI 224
ESL SIEE+FG++VA LV+ VS+LSYINQLLRRHR+ N + TL EE +N+R
Sbjct: 202 TESLKSIEEQFGNDVASLVSCVSKLSYINQLLRRHRQKNTDGSTLTSEEA----NNLRA- 256
Query: 225 YALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL--CFAVLQPQIFRKMRADLASM 282
+L+ R+ L L L ++ +A+ P+ + LA
Sbjct: 257 ---------------MLLGMVDDPRVVLIKLSDRLHNMRTIYALPIPKAEAVAQETLAVW 301
Query: 283 WSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
S +R+G + +D F ++DLL+AV+PFD+ DR
Sbjct: 302 CSLASRLGV------------WALKAELEDLCFAV-------LQDLLQAVLPFDLFLDRG 342
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
+R+ FL++L SSEA KK K+V DA +ALTSL ACEE L++ELLI+TSYIPGMEVTLSSR
Sbjct: 343 RRSDFLNNLQSSSEASKKPKIVDDAAVALTSLAACEEELQQELLITTSYIPGMEVTLSSR 402
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
LKSLYSI+ KM RK VGI +VYDARALRV+VGDKNG LHGPA++ CYS+LDIVHRLW PI
Sbjct: 403 LKSLYSIYCKMERKHVGIRQVYDARALRVIVGDKNGALHGPAVRSCYSILDIVHRLWTPI 462
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
DGEFDDYI+NPK SGYQSLHTAVQ D S LEVQIRTQ+MHEYAE+GLAAHWLYKE+ K
Sbjct: 463 DGEFDDYIINPKGSGYQSLHTAVQASDSSPLEVQIRTQRMHEYAEYGLAAHWLYKES--K 520
Query: 523 LQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIR 582
+ + S M +++S S ++D + + + S+K+GHPV+R++G++LLAAVI+
Sbjct: 521 VDTRSGMSNKISQSTSYASSSSEDESYVKDSI----PSIKVGHPVLRIDGNHLLAAVIVS 576
Query: 583 VEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTC 642
++KGG+ELLVAV F ASE VA+RR SFQ++ WEAYARL+KK +++WWC PGHGDW T
Sbjct: 577 IDKGGKELLVAVHFTHEASEDVAERRSSFQLERWEAYARLHKKVTEKWWCAPGHGDWSTN 636
Query: 643 LEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVSRRS 702
LEKYTLCRDG++HKQDQFGRLLPTFIQI LTEEEE EYW VVSAVFEGK ++ S S
Sbjct: 637 LEKYTLCRDGIFHKQDQFGRLLPTFIQIIDLTEEEEDEYWMVVSAVFEGKETSTLTS-ES 695
Query: 703 SDSVAPTSMEAS-------INNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVV 755
S++ PTS S INNKV LLRTML+WEEQ+R AS + LG + P +
Sbjct: 696 SNADRPTSYPPSSTPLSDPINNKVHLLRTMLQWEEQVRRGASWAERSLGARTLTEP---I 752
Query: 756 PGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVR 814
EV I+CWP G+IMR+ +GSTAADA ++G++GKL+ VNGQLV P TELKDGDIVEVR
Sbjct: 753 LHEVAIICWPYGKIMRMSTGSTAADAGRRMGVDGKLLWVNGQLVQPQTELKDGDIVEVR 811
>gi|302810512|ref|XP_002986947.1| hypothetical protein SELMODRAFT_446775 [Selaginella moellendorffii]
gi|300145352|gb|EFJ12029.1| hypothetical protein SELMODRAFT_446775 [Selaginella moellendorffii]
Length = 947
Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/855 (49%), Positives = 552/855 (64%), Gaps = 86/855 (10%)
Query: 13 IFFCKFRRNRPKFSCLLDHANVIAAAAAAGKAHGAVTSAITHVAVTAVAIASG------- 65
+ K R + S LLDH A+ G+ ++A VA TA A A
Sbjct: 124 VLVKKEGRRQAISSLLLDHVVRQVPLASVGQLLATGSTAFRTVAPTASAHAVALMTFAQV 183
Query: 66 ---------ACL--STKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRA 114
AC+ D K+++ + + DGVDV+ YPIF DE+VQ+A+++A+ A
Sbjct: 184 AVTAAVAYGACILPQASSDPRNGKVDDGTASLVFDGVDVSDYPIFQDEKVQRAVSYAREA 243
Query: 115 HHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEE 174
H GQ R TGDPY+THCIHT +ILA L+P G +A+DTVVAGILHDVVDD SL +
Sbjct: 244 HAGQMRMTGDPYITHCIHTAKILAALVPQVGTKAIDTVVAGILHDVVDDTTRSLHDLRTS 303
Query: 175 FGDEVAKLVAGVSRLSYINQLLRRHRRINVNQ-----GTLGHEE---------------- 213
FGD VA LVAGVSRLSYINQLLRRHRR ++ L EE
Sbjct: 304 FGDNVADLVAGVSRLSYINQLLRRHRRKTAHEREEFGNGLTSEEVDSLRIMLLGMVNDPR 363
Query: 214 -----LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQ 268
LADRLHNMRTIYALP KARAVAQETL +WCSLASRLG+W +KAELEDLCFAVL+
Sbjct: 364 VVLVKLADRLHNMRTIYALPAPKARAVAQETLAVWCSLASRLGVWTVKAELEDLCFAVLE 423
Query: 269 PQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTAS-DDESFTTFDEHVLSMKD 327
PQ FR++R+ LA+MWS V + R++T L T S +DES ++ LSMKD
Sbjct: 424 PQTFRELRSGLAAMWSVDEEVRHYRKMTKREKRRALIYGTESTEDESNEEIED--LSMKD 481
Query: 328 LLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLI 387
LL+AV+PFD+LS R+ R K L S K+KV++D +AL +L CEEAL+KE+ I
Sbjct: 482 LLDAVIPFDLLSGRKNRGKQKFGLPPS---LSKSKVIEDTKVALAALSLCEEALDKEVAI 538
Query: 388 STSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQC 447
ST YIPG EVTLS RLKSLYS SKM+RK V + ++YDARALRVVVGD G LH AI+
Sbjct: 539 STPYIPGTEVTLSGRLKSLYSTHSKMKRKGVHLDQIYDARALRVVVGDGGGKLHVAAIKG 598
Query: 448 CYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAE 507
CYSLLD+VHRLW+PI GEFDDYI+NPKPSGYQSLHTAV+GPDG+ LEVQIRTQ MHE AE
Sbjct: 599 CYSLLDVVHRLWMPISGEFDDYILNPKPSGYQSLHTAVRGPDGAPLEVQIRTQLMHEQAE 658
Query: 508 HGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSS----LKM 563
G AAHWLYKE+G + + +A + +D+ DTDL S+ +++
Sbjct: 659 SGNAAHWLYKESGAPVMT---------QALPTNGRDS------DTDLTPSSSTPSKQVQL 703
Query: 564 GHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKC-WEAYARL 622
+P +R+EG +L AAV+IRV+ G+ELLVAVS G A +V+ SF K W+ +A +
Sbjct: 704 RYPALRIEGGSLRAAVVIRVDHDGKELLVAVSSGEA---IVSG--ASFDDKDRWKIFAYM 758
Query: 623 YKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYW 682
Y K + WW PGHGDW TCLEKY LC D +YHK+DQF R LPTF+Q+ L E EY
Sbjct: 759 YSKVAKSWWFAPGHGDWDTCLEKYVLCGDHIYHKKDQFHRPLPTFLQLLELDARELKEYM 818
Query: 683 AVVSAVFEGKPVD---SVVSRRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLR 739
V++ V EG ++ + SS +++ S +NNKV+LLR+ML+WE+++ EA+
Sbjct: 819 EVMTMVDEGIEIELQTQAGTSMSSQNLSSGSATTRLNNKVKLLRSMLQWEKEVHFEAA-- 876
Query: 740 QSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLV 799
+ +P S V EV+++ WPNG+I+R+ +GST +DAA ++G++ K++ VNGQL
Sbjct: 877 ------RHPDDPSSAVLTEVLVISWPNGDIVRMPAGSTVSDAAQRMGIDNKIMYVNGQLA 930
Query: 800 LPNTELKDGDIVEVR 814
LP EL+DGD++EVR
Sbjct: 931 LPLVELRDGDVIEVR 945
>gi|326495622|dbj|BAJ85907.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 491
Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/506 (64%), Positives = 393/506 (77%), Gaps = 30/506 (5%)
Query: 325 MKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQ-KKAKVVQDAGIALTSLVACEEALEK 383
M+DLL+AV+PFD+ DRR+R+ FL++L SSEA +K K+V DA IALTSL ACEE L++
Sbjct: 1 MEDLLQAVLPFDLFLDRRRRSDFLNNLQSSSEASIRKPKIVDDAAIALTSLAACEEELQQ 60
Query: 384 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 443
ELLI+TSYIPGMEV LSSRLKSLYSI+ KM+RK VGI +VYDARALRV+VGDKNG LHGP
Sbjct: 61 ELLITTSYIPGMEVRLSSRLKSLYSIYCKMKRKHVGIRQVYDARALRVIVGDKNGALHGP 120
Query: 444 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 503
A++ CY++LDIVHRLW PIDGEFDDYI+NPK SGYQSLHTAVQ D S LEVQIRTQ+MH
Sbjct: 121 AVRSCYNILDIVHRLWTPIDGEFDDYIINPKGSGYQSLHTAVQASDSSPLEVQIRTQRMH 180
Query: 504 EYAEHGLAAHWLYKET--------GNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLF 555
EYAE+GLAAHWLYKE+ GNK++ +S + ASSS + D P
Sbjct: 181 EYAEYGLAAHWLYKESNVNTGSGMGNKIK------QSTLYASSSSEDEITDGVP------ 228
Query: 556 QKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKC 615
KY S+K+GHPV+R++G++LLAAVI+ +EKGG+ELLVAV F L ASE VA+RR SFQ+K
Sbjct: 229 SKYISMKVGHPVLRIDGNHLLAAVIVSIEKGGKELLVAVRFTLEASEDVAERRSSFQLKR 288
Query: 616 WEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTE 675
WEAYARL+KK +++WWC PGHGDW T LEKY LCRDG+YHKQDQFGRLLPTFIQI LTE
Sbjct: 289 WEAYARLHKKVTEKWWCAPGHGDWSTNLEKYILCRDGIYHKQDQFGRLLPTFIQIIDLTE 348
Query: 676 EEESEYWAVVSAVFEGKPVDSVVS------RRSSDSVAPTSMEASINNKVRLLRTMLRWE 729
EEE EYW VVSAVFEGK ++ S R +SD T + INNKV LLRTML+WE
Sbjct: 349 EEEEEYWMVVSAVFEGKETSTLTSESSNGDRSTSDLPISTPLSDPINNKVHLLRTMLQWE 408
Query: 730 EQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEG 789
EQ+R AS+ + LG K+ +P + EV I+CWP G+IMR+ +GSTAADA ++G++G
Sbjct: 409 EQVRRRASVAERSLGAKSLTDP---ILREVAIICWPYGKIMRMSTGSTAADAGRRLGVDG 465
Query: 790 KLVLVNGQLVLPNTELKDGDIVEVRV 815
KL+ VNG LVLP TELKDGDIVEVR
Sbjct: 466 KLLWVNGLLVLPQTELKDGDIVEVRT 491
>gi|41052967|dbj|BAD07877.1| putative relA/spoT homologous protein RSH2 [Oryza sativa Japonica
Group]
Length = 772
Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust.
Identities = 321/498 (64%), Positives = 390/498 (78%), Gaps = 12/498 (2%)
Query: 325 MKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQ-KKAKVVQDAGIALTSLVACEEALEK 383
++DLL+AV+PFD+L DR++R+ FL++L SSE K K+V DA +AL SL ACEE LE+
Sbjct: 280 LQDLLQAVLPFDLLLDRKRRSYFLNNLHGSSETSVPKPKIVDDAAVALASLAACEEELEQ 339
Query: 384 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 443
ELLISTSYIPGMEVTLSSRLKSLYS++ KM+RK VGI ++YDARALRV++GDKNG LHGP
Sbjct: 340 ELLISTSYIPGMEVTLSSRLKSLYSMYCKMKRKHVGIKQIYDARALRVIIGDKNGALHGP 399
Query: 444 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 503
A++ CYS+LDIV+RLW PIDGEFDDYI+NPK SGYQSLHTAVQ D S LEVQIRTQ+MH
Sbjct: 400 AVKNCYSVLDIVNRLWTPIDGEFDDYIINPKGSGYQSLHTAVQASDNSPLEVQIRTQRMH 459
Query: 504 EYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKM 563
EYAE+GLAAHWLYKE+ K+ S +++S S ++D N + + KYSS+KM
Sbjct: 460 EYAEYGLAAHWLYKES--KVDYRSGTSNKIGQSTSYPSSSSEDENYIQDVMPSKYSSMKM 517
Query: 564 GHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLY 623
GHPV+R+EGS LLAAVI+ ++KGG+ELLVAVSFGL ASE VA+RR FQ+K WE YAR+Y
Sbjct: 518 GHPVLRIEGSQLLAAVIVSIDKGGKELLVAVSFGLEASEAVAERRSCFQLKRWETYARVY 577
Query: 624 KKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWA 683
KK S++WWC PGHGDW T LEKYTLC+DG++HKQDQFGRLLPTFIQ+ LTEEEE EYW
Sbjct: 578 KKVSEKWWCAPGHGDWSTNLEKYTLCQDGIFHKQDQFGRLLPTFIQLIDLTEEEEEEYWM 637
Query: 684 VVSAVFEGK------PVDSVVSRRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEAS 737
VVSA+FEGK P S R +S+ + T + INNKV LLRTML+WEEQ+R AS
Sbjct: 638 VVSAIFEGKEASSLTPDSSNTERSTSEPPSSTPLSDPINNKVHLLRTMLQWEEQVRRGAS 697
Query: 738 LRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQ 797
L + L P + EV I+CWP G+IMR+ GSTAADAA ++G+EGKL+ VNGQ
Sbjct: 698 LVEKSLSVGTCTEP---ILREVAIICWPYGKIMRMSLGSTAADAARRMGVEGKLLWVNGQ 754
Query: 798 LVLPNTELKDGDIVEVRV 815
LVLP TELKDGDIVEVR+
Sbjct: 755 LVLPQTELKDGDIVEVRM 772
Score = 322 bits (826), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 168/268 (62%), Positives = 197/268 (73%), Gaps = 27/268 (10%)
Query: 20 RNRPKFSCLLDH-ANVIAAAAAA------------------GKAHGAVTSAITHVAVTAV 60
R R + C+L+H A +A A+AA G H AV S + + VTAV
Sbjct: 22 RARMRLGCVLEHVAPRLAVASAALLGAGEVIAAAAAAGKSGGAGHAAVASTLAQLTVTAV 81
Query: 61 AIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFR 120
AIASGACLSTKVDFLWP++E+ P T I +GV+VTGYPIF D +VQKAI FA AH GQFR
Sbjct: 82 AIASGACLSTKVDFLWPRIEQLPDTLIFEGVEVTGYPIFEDPKVQKAIVFASTAHIGQFR 141
Query: 121 KTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVA 180
KTGDPY+THCIHTG+ILA L+PS+G+RA++TVVAGILHDV+DD E+L SIEE+FGD+VA
Sbjct: 142 KTGDPYVTHCIHTGKILAALVPSTGERAINTVVAGILHDVIDDTAENLKSIEEQFGDDVA 201
Query: 181 KLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETL 240
LV+GVS+LSYINQLLRRHR+ N TL EE YALP KA AVAQETL
Sbjct: 202 SLVSGVSKLSYINQLLRRHRQKNTGGSTLTSEEYFS--------YALPIRKAEAVAQETL 253
Query: 241 LIWCSLASRLGLWALKAELEDLCFAVLQ 268
+WCSLASRLG+WALKAELEDLCFAVLQ
Sbjct: 254 AVWCSLASRLGVWALKAELEDLCFAVLQ 281
>gi|147784360|emb|CAN72734.1| hypothetical protein VITISV_020261 [Vitis vinifera]
Length = 378
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 262/376 (69%), Positives = 302/376 (80%), Gaps = 19/376 (5%)
Query: 459 WIPIDGEFDDYIVNPKPSG---------YQSLHTAVQGPDGSALEVQIRTQKMHEYAEHG 509
W+P D +N K G SLHTAVQGPD S LEVQIRTQ+MHEYAEHG
Sbjct: 3 WVPPKSISDMMFINYKGFGKSKRGVILWQNSLHTAVQGPDNSPLEVQIRTQRMHEYAEHG 62
Query: 510 LAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIR 569
LAAHWLYKET NKL S S +D+S+I+ASS S+D ++ N + D+FQKY SLK GHPV+R
Sbjct: 63 LAAHWLYKETENKLPSTSILDDSEIKASSYFSEDMENQNSVGDDVFQKYGSLKAGHPVLR 122
Query: 570 VEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDE 629
VEGS+LLAAV++RV+K GRELLVAVSFGLAASE VADRR SFQIK WEAYARLYKK SDE
Sbjct: 123 VEGSHLLAAVVVRVDKDGRELLVAVSFGLAASEAVADRRSSFQIKRWEAYARLYKKVSDE 182
Query: 630 WWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVF 689
WW +PGHGDWCTCLEKYTLCRDGMYHK+DQF RLLPTFIQ+ LTE+EESEYWAVVSA+F
Sbjct: 183 WWFEPGHGDWCTCLEKYTLCRDGMYHKEDQFQRLLPTFIQVIDLTEQEESEYWAVVSAIF 242
Query: 690 EGKPVDSVVS--------RRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQ- 740
EGK + S+ S R SS+ ++ TS+EA+INNKV LLRTML+WEEQLRSEA +RQ
Sbjct: 243 EGKQIASIESHSNSSFYKRPSSNPISSTSLEANINNKVHLLRTMLQWEEQLRSEAGMRQT 302
Query: 741 -SKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLV 799
+K+G P SVV GEVVIVCWP+GEIMRLR+GSTAADAA +VGL+GKLVLVNGQ V
Sbjct: 303 KTKVGADPYSTPKSVVLGEVVIVCWPHGEIMRLRTGSTAADAAQRVGLDGKLVLVNGQYV 362
Query: 800 LPNTELKDGDIVEVRV 815
LPNT+LKDGD+VEVR+
Sbjct: 363 LPNTQLKDGDVVEVRM 378
>gi|168004493|ref|XP_001754946.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694050|gb|EDQ80400.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 667
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 266/496 (53%), Positives = 354/496 (71%), Gaps = 14/496 (2%)
Query: 325 MKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKE 384
+ +LL+AVVPF++LSDR++R + + +K KV++DA +AL +L ACEEALE+E
Sbjct: 174 LYELLQAVVPFEVLSDRKRRKWRI--VTPGPGEKKLPKVIRDAKVALAALSACEEALERE 231
Query: 385 LLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPA 444
LLI+TSY+PGMEV LS RLKSLYS + KMRRK VG+ +++DARALRV+VGD +G LH A
Sbjct: 232 LLIATSYVPGMEVRLSGRLKSLYSTWCKMRRKGVGVDQIFDARALRVIVGDGDGKLHVAA 291
Query: 445 IQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHE 504
++ CY+LL +VH LW P+ GEFDDYI+NPKPSGYQSLHTAVQGPDG+ LEVQIRT+ MH+
Sbjct: 292 VEGCYNLLSVVHSLWKPVGGEFDDYILNPKPSGYQSLHTAVQGPDGAPLEVQIRTRGMHD 351
Query: 505 YAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLK-- 562
+AE+G AAHWLYKE +++ + M+ +++ S D D D +F K S +
Sbjct: 352 HAEYGHAAHWLYKEGDTVVKATTPMNPP-VDSPLPDSDDASD----DEQVFAKPSPRRPV 406
Query: 563 -MGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYAR 621
MGHP +RVE LLAAVI+ V GRELLVA SF L A E VA R Q K W Y R
Sbjct: 407 YMGHPALRVEDGRLLAAVIVGVMDEGRELLVAASFALHAREAVAAGRFGNQRKRWLTYCR 466
Query: 622 LYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEY 681
LYKK +D+WW PGHGDW TCLEKYTLCRDG+YHKQDQF R LPTFIQ+ L E E+ +Y
Sbjct: 467 LYKKVADQWWFAPGHGDWSTCLEKYTLCRDGLYHKQDQFDRSLPTFIQLLDLNESEQDDY 526
Query: 682 WAVVSAVFEGKPVDSVVSR---RSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASL 738
W V+S V +G+ VD V + +D + TS +NNKV+LLR+ML+WE++LR E +
Sbjct: 527 WKVMSMVEQGEEVDIFVDNAADQHNDLGSGTSTTTRLNNKVKLLRSMLQWEQELRHEVAP 586
Query: 739 RQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQL 798
S + +P++ EV+++ WP+G+IMR+ +GSTAAD A ++G++G++V +N Q
Sbjct: 587 DGSVTILNPD-HPETAALVEVLVISWPDGDIMRMPAGSTAADLARRMGMDGEIVFINHQA 645
Query: 799 VLPNTELKDGDIVEVR 814
LP+T+L+DGD+VE R
Sbjct: 646 ALPHTKLRDGDLVETR 661
Score = 203 bits (516), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 107/168 (63%), Positives = 125/168 (74%), Gaps = 11/168 (6%)
Query: 101 DEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIP-SSGKRAVDTVVAGILHD 159
D QVQKAI +A+ AH GQFR+TG+PY+THCIHT RILA LIP GKR +DT++AGILHD
Sbjct: 17 DLQVQKAIEYAREAHAGQFRRTGEPYITHCIHTARILADLIPHQQGKRVIDTIIAGILHD 76
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLH 219
V+DD S+ FGD+V+KLVAGVS+LS INQLLRR RR V + L R +
Sbjct: 77 VIDDTDRDHQSVRLHFGDDVSKLVAGVSKLSNINQLLRRQRRKAVTR-------LFSRCN 129
Query: 220 NMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL 267
YALP AKA AVAQETL +WCSLAS+LG WA+KAELEDLCFAVL
Sbjct: 130 ---CSYALPEAKASAVAQETLAVWCSLASKLGEWAVKAELEDLCFAVL 174
>gi|302792310|ref|XP_002977921.1| hypothetical protein SELMODRAFT_152204 [Selaginella moellendorffii]
gi|300154624|gb|EFJ21259.1| hypothetical protein SELMODRAFT_152204 [Selaginella moellendorffii]
Length = 370
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 219/375 (58%), Positives = 269/375 (71%), Gaps = 25/375 (6%)
Query: 213 ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 272
+LADRLHNMRTIYALP KARAVAQETL +WCSLASRLG+W +KAELEDLCFAVL+PQ F
Sbjct: 15 KLADRLHNMRTIYALPAPKARAVAQETLAVWCSLASRLGVWTVKAELEDLCFAVLEPQTF 74
Query: 273 RKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTAS-DDESFTTFDEHVLSMKDLLEA 331
R++R+ LA+MWS V + R++T L T S +DES ++ LSMKDLL+A
Sbjct: 75 RELRSGLAAMWSVDEEVRHYRKMTKREKRRALIYGTESTEDESNEEIED--LSMKDLLDA 132
Query: 332 VVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSY 391
V+PFD+LS R+ R K L S K+KV++D +AL +L CEEAL+KE+ IST Y
Sbjct: 133 VIPFDLLSGRKNRGKQKFGLPPS---LSKSKVIEDTKVALAALSLCEEALDKEVAISTPY 189
Query: 392 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 451
IPG EVTLS RLKSLYS SKM+RK V + ++YDARALRVVVGD G LH AI+ CYSL
Sbjct: 190 IPGTEVTLSGRLKSLYSTHSKMKRKGVHLDQIYDARALRVVVGDGGGKLHVAAIKGCYSL 249
Query: 452 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 511
LD+VHRLW+PI GEFDDYI+NPKPSGYQSLHTAV+GPDG+ LEVQIRTQ MHE AE G A
Sbjct: 250 LDVVHRLWMPISGEFDDYILNPKPSGYQSLHTAVRGPDGAPLEVQIRTQLMHEQAESGNA 309
Query: 512 AHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSS----LKMGHPV 567
AHWLYKE+G + + D+ + S DTDL S+ +++ +P
Sbjct: 310 AHWLYKESGAPVMT------QDLPTNGRDS---------DTDLTPSSSTPSKQVQLRYPA 354
Query: 568 IRVEGSNLLAAVIIR 582
+R+EG +L AAV+IR
Sbjct: 355 LRIEGGSLRAAVVIR 369
>gi|308810138|ref|XP_003082378.1| putative relA/spoT homologous protein RSH2 (ISS) [Ostreococcus
tauri]
gi|116060846|emb|CAL57324.1| putative relA/spoT homologous protein RSH2 (ISS) [Ostreococcus
tauri]
Length = 850
Score = 335 bits (860), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 259/836 (30%), Positives = 401/836 (47%), Gaps = 154/836 (18%)
Query: 87 IVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGK 146
+V GVDV+ Y IF++ +V++A+ FA H G+ RK G+ Y HC+ + +ILA +P +G
Sbjct: 46 MVHGVDVSRYAIFDEPEVRRALGFATGWHGGRRRKNGETYARHCVESAKILAANLPGTGP 105
Query: 147 RAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI---N 203
++ D VVA +LHDV+DD S ++ E FG V LV VSR+ +NQ++RR RR +
Sbjct: 106 KSRDAVVACLLHDVLDDTGCSEETLREAFGPGVYNLVVQVSRVGSMNQVIRRRRRDLPES 165
Query: 204 VNQGTLGHEEL---------------------ADRLHNMRTIYALPP-AKARAVAQETLL 241
+ L E+L ADRLHNMRT+YA+ KA +A ETL
Sbjct: 166 DERNKLSEEDLTQLRKILLLIVRDPRVFLIKIADRLHNMRTLYAISSEQKAMDIANETLR 225
Query: 242 IWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP-----------RNRVG 290
+WCSLA +LG+WA+K+ELEDLCFAVL+P F +R MW P N G
Sbjct: 226 VWCSLAEKLGMWAIKSELEDLCFAVLEPDNFDSVREARDKMWRPIYEDEDEGLDSENSYG 285
Query: 291 YSRRITTIVSSPPLDERTA-------SDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRK 343
+ + + P + SDD + + L+MK +E++ FD +S R
Sbjct: 286 WLSKSFGVSKLPFFNAEETNASGSFDSDDSPSVQYTQAQLAMKMRIESIPSFDWISTRE- 344
Query: 344 RTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRL 403
S + +++ + +L +L + ELL+ Y + +++SSRL
Sbjct: 345 --------GDSLRYDRMSELPESIAASLNTLDEVRGRIWSELLMD-GYDSDLNISMSSRL 395
Query: 404 KSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPA--IQCCYSLLDIVHRLWIP 461
KS YS KM+RK + ++V DARA+R+VVGD + + G + CY+LLD++H+++ P
Sbjct: 396 KSAYSTHQKMKRKGLPFNRVCDARAMRIVVGDPSASAGGTEREVDACYALLDLIHKMYRP 455
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
I+GE+DDYI+NPK +GY+SLHTAV GPDG+ EVQ+RT+ MH+ AE G+AA W+YK G
Sbjct: 456 IEGEYDDYIINPKQTGYRSLHTAVNGPDGAPFEVQVRTRSMHDSAEFGMAAQWMYK--GK 513
Query: 522 KLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVII 581
+ S + ++L+ D D +G V V V+I
Sbjct: 514 ATYASKSYQD------AALTDDVPD----------------VGAGVQLVSSGRRSCGVVI 551
Query: 582 RVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYAR----LYKKASDEWWCQPGHG 637
+ GG +LVA S+VVA + + E L ++ + E++
Sbjct: 552 --QSGGSRMLVAEPKQAQWSDVVAWMSEGYHKQLLEEVRESGLMLARQGTSEFFI----S 605
Query: 638 DWCTCLEKYTLCRDGMYHK-------------------------------------QDQF 660
++C C+++ D + HK Q
Sbjct: 606 EFCYCVDQRWHRVDNLGHKTRVTAEIVAKRLEMSNAEFGEEFGEEMDDIDARIRQLQTIA 665
Query: 661 GRLLPTFIQITHLTEEEESEYWAVVSAV------FEGKPVDSVVSRR----SSDSVAPTS 710
G LL + L E E + A V A+ + + + +R + ++ A +
Sbjct: 666 GDLLNDSTASSILQETELGNWSATVQAIKKRERAMQARQSQAEREKRWRTGAEEAPALSI 725
Query: 711 MEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNG--E 768
+ AS K + + + EE + EA + S KAN +P+ V V+I+ W + E
Sbjct: 726 LMASSALKAKPAAGIFQTEEAAKFEAEVALS--SPKAN-HPNIDVEDGVMIITWTDNYPE 782
Query: 769 IMRLRSGSTAADAAM---KVGLEGKL----------VLVNGQLVLPNTELKDGDIV 811
+ ++ GST A+ K+ E +L V VN +V P T LKDGD++
Sbjct: 783 LHSIKRGSTVAEIREIIDKIPGEKRLAPPKVESDESVNVNMVMVPPTTTLKDGDMI 838
>gi|145353023|ref|XP_001420831.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581066|gb|ABO99124.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 890
Score = 313 bits (801), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 193/505 (38%), Positives = 280/505 (55%), Gaps = 64/505 (12%)
Query: 90 GVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAV 149
GVDV+ Y IF + +V++A+AFA H GQ RK GD Y HC+ + +ILA +P +G R+
Sbjct: 81 GVDVSRYAIFQEPEVKRALAFAASWHRGQRRKNGDSYAKHCVESAKILAANLPGNGSRSR 140
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL-------------- 195
D V A +LHDV+DD + +++ FG V LV VSR+ +N++
Sbjct: 141 DAVCACLLHDVLDDTACTDETLKATFGTRVYNLVIQVSRVGQMNEVMRRRRRDVDDVEVK 200
Query: 196 ----------LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPA-KARAVAQETLLIWC 244
LR+ + V + ++ADRLHNMRTIYA+ KA +A ETL +WC
Sbjct: 201 AKLSEEDLTQLRKILLLIVRDPRVFLIKIADRLHNMRTIYAISSEEKAMDIANETLRVWC 260
Query: 245 SLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR--------VGYSRRIT 296
SLA +LG+WA+K+ELEDLCFAVL P+ F + + W PR + S++
Sbjct: 261 SLAEKLGMWAIKSELEDLCFAVLDPENFDGIMTARSKAWKPRAKDMSGRARSSSKSKQTG 320
Query: 297 TIVSSPP----LD--------ERTASD--DESFTTFDEHV----LSMKDLLEAVVPFDIL 338
SSP LD E T SD D S + D+ L +K +E++ FD L
Sbjct: 321 QTESSPSSFFGLDAVSFFGAKEETESDSFDGSGSHDDDRYAPWQLDVKHRIESIPSFDWL 380
Query: 339 SDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLIST-SYIPGMEV 397
S R S + + + +L++L A L ELL+ + + +
Sbjct: 381 STRE---------GDSLQVEGLTALPGSIAASLSTLDAIRGRLWSELLMDGYTTQSDLNI 431
Query: 398 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPA--IQCCYSLLDIV 455
++SSRLKS YS + KM+RK++ +V D RA+R+VVGD + + G I CY+LLD++
Sbjct: 432 SVSSRLKSAYSTYMKMKRKNLPFERVCDTRAMRIVVGDASTSERGTEREIDACYALLDLI 491
Query: 456 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 515
H+++ PI+GE+DDYI N K +GY+SLHTA+ GPDG+ LEVQ+RT+ MH+ AE G+AA W+
Sbjct: 492 HKMYRPIEGEYDDYITNAKKTGYRSLHTAIGGPDGAPLEVQVRTRSMHDAAEFGVAAQWM 551
Query: 516 YKETGNKLQSISSMDESDIEASSSL 540
YK K S S D S + + S+
Sbjct: 552 YKGK-PKFASKSYQDASHTDETPSV 575
>gi|224126647|ref|XP_002319889.1| predicted protein [Populus trichocarpa]
gi|222858265|gb|EEE95812.1| predicted protein [Populus trichocarpa]
Length = 222
Score = 286 bits (732), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 145/201 (72%), Positives = 164/201 (81%), Gaps = 13/201 (6%)
Query: 7 KNSP-----FPIFFCKFRRNRPKFSCLLDH-----ANVIAAAAAA---GKAHGAVTSAIT 53
K SP + + F ++ K+ CLLD ANVIAAA A+ G HGAVTSAIT
Sbjct: 6 KTSPSLFHRYSLHFRSSNSSKYKYRCLLDQIAPVSANVIAAAVASSGSGYLHGAVTSAIT 65
Query: 54 HVAVTAVAIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKR 113
HVAVTAVAIASGACLST+VDFLWPK EEQPG FIVDGVDVTGYPIFN+ +V KAIAFAK+
Sbjct: 66 HVAVTAVAIASGACLSTRVDFLWPKGEEQPGCFIVDGVDVTGYPIFNEAKVVKAIAFAKK 125
Query: 114 AHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEE 173
AHHGQFRKTGDPY THCIHT RILAML+PS+GKRA+DT+VAGILHDVV+D ESL SIEE
Sbjct: 126 AHHGQFRKTGDPYFTHCIHTARILAMLVPSTGKRAIDTLVAGILHDVVEDTSESLLSIEE 185
Query: 174 EFGDEVAKLVAGVSRLSYINQ 194
FG++VAKLVAGVS++SYINQ
Sbjct: 186 NFGEDVAKLVAGVSKISYINQ 206
>gi|224126639|ref|XP_002319887.1| predicted protein [Populus trichocarpa]
gi|222858263|gb|EEE95810.1| predicted protein [Populus trichocarpa]
Length = 160
Score = 264 bits (675), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 124/150 (82%), Positives = 130/150 (86%)
Query: 502 MHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSL 561
MHEYAEHGLAAHWLYKETGN L SI S DES+ EASS LSKD DD ++ D FQKY SL
Sbjct: 1 MHEYAEHGLAAHWLYKETGNTLSSIGSTDESETEASSYLSKDIDDQTSMEDDQFQKYRSL 60
Query: 562 KMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYAR 621
K GHPV+RVE S+LLAAVIIRVEKGGRELLVAVSFGLAASE VADRR SFQIK WEAYAR
Sbjct: 61 KAGHPVLRVERSHLLAAVIIRVEKGGRELLVAVSFGLAASEAVADRRSSFQIKQWEAYAR 120
Query: 622 LYKKASDEWWCQPGHGDWCTCLEKYTLCRD 651
LYKK SDEWWC+PGHGDWCTCLEKYT CRD
Sbjct: 121 LYKKVSDEWWCEPGHGDWCTCLEKYTFCRD 150
>gi|224126635|ref|XP_002319886.1| predicted protein [Populus trichocarpa]
gi|222858262|gb|EEE95809.1| predicted protein [Populus trichocarpa]
Length = 161
Score = 236 bits (601), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 121/160 (75%), Positives = 136/160 (85%)
Query: 656 KQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVSRRSSDSVAPTSMEASI 715
+QDQF RLLPTFIQ+ L EEEESEY AV+SAVFEGKPVDS+ SR + D+VA TSMEASI
Sbjct: 2 QQDQFERLLPTFIQVIDLMEEEESEYRAVLSAVFEGKPVDSIASRPNIDTVASTSMEASI 61
Query: 716 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 775
NNKVRLLRTML+WEEQLR EA L Q K K+ + +S GEVVIVCWP+GEI+RLRSG
Sbjct: 62 NNKVRLLRTMLQWEEQLRYEAILGQPKHERKSYSSLESGGLGEVVIVCWPHGEIIRLRSG 121
Query: 776 STAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 815
STAADAA +VG +GKLVLVNGQLVLPNTELKDGD+VEVRV
Sbjct: 122 STAADAARRVGFDGKLVLVNGQLVLPNTELKDGDVVEVRV 161
>gi|384245712|gb|EIE19205.1| hypothetical protein COCSUDRAFT_59689 [Coccomyxa subellipsoidea
C-169]
Length = 880
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 176/501 (35%), Positives = 247/501 (49%), Gaps = 94/501 (18%)
Query: 327 DLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELL 386
+L++ V+PF ++ R + +S+ Q +A AL L C L EL
Sbjct: 453 ELIQTVLPFYAVTFR----------SGASQQQSRA--------ALDVLDKCAHRLLYELK 494
Query: 387 ISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQ 446
+ G++V + R+KSLYS++ KM RK V + +V+DA ALRVVV D+NG AI+
Sbjct: 495 ME-GLATGLDVHVEGRIKSLYSMYRKMIRKSVSLREVFDALALRVVVDDQNGFKMQRAIE 553
Query: 447 CCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYA 506
CY + VHRLW PI GE DDYI NPK SGYQSLH+AV GP G +EVQIRT MHE A
Sbjct: 554 ACYEIQPAVHRLWRPIRGELDDYIFNPKASGYQSLHSAVIGPAGVPMEVQIRTSSMHEIA 613
Query: 507 EHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHP 566
E+G AAHW YK+T + + ++A +S S DT +K+G P
Sbjct: 614 EYGAAAHWAYKDTPH----------APVQAGASTSGDT----------------IKVGQP 647
Query: 567 VIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRR-PSFQIKCWEAYARLYKK 625
++RV L V++ +E G +LVAV + S V+ D Q+K AY R K
Sbjct: 648 MVRVLRGKLQLGVVVDIE--GDRMLVAV---VVPSRVMPDTSIDKNQVKTVLAYVRRKK- 701
Query: 626 ASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVV 685
+W PGHGD LE Y LC+DG +H D + + P F+ +
Sbjct: 702 ----FWA-PGHGDLHLSLESYMLCKDGYWHLVDSYDQKQPPFVMPLQNVQ---------- 746
Query: 686 SAVFEGKPVDSVVSRRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGG 745
K D V + TS EA K RLLR ML W+ L + + + G
Sbjct: 747 ------KGFDGVKGKAKL-----TSAEA---RKARLLRRMLEWQRDLLGDPDGMEGEAGS 792
Query: 746 KANGNPDSVVP--GEVVIVCWPNGEIMRLRSGSTAADAAMKVGL-----EG------KLV 792
+ + ++ +P +V ++ P G+I ++ G+TA D + G EG +LV
Sbjct: 793 GGSSSGNAPIPQSSQVQVLIVPTGKIEQVERGTTAGDIIRQKGRIEIEEEGRRHIGPRLV 852
Query: 793 LVNGQLVLPNTELKDGDIVEV 813
VN LV +T L DGD V +
Sbjct: 853 NVNNHLVPESTPLGDGDWVSL 873
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 116/200 (58%), Gaps = 34/200 (17%)
Query: 118 QFRKTGDPYLTHCIHTGRILAMLIPSS-----GKRAVDTVVAGILHDVVDDACESLGSIE 172
Q R TGDPY+ HC+ T I+ L +S +R V+A +LHDVVDD SL +
Sbjct: 63 QKRLTGDPYIMHCVETAAIVECLHATSKLDEMDERVEAAVLAALLHDVVDDTRVSLEEVR 122
Query: 173 EEFGDEVAKLVAGVSRLSYI-----------NQL------------------LRRHRRIN 203
EFG +A++V V++LS N++ LR
Sbjct: 123 AEFGPRIARIVGQVAQLSTTTQLLRRRRRTHNEMYVGAAAPAPELTREEDADLRNMILAM 182
Query: 204 VNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLC 263
V++ + +LADRLHNMRT++AL P + RAVA ET+ +WCSLA RLG+++LK+ELEDLC
Sbjct: 183 VDEPLVLVVKLADRLHNMRTVFALRPDRQRAVALETMQVWCSLAERLGMYSLKSELEDLC 242
Query: 264 FAVLQPQIFRKMRADLASMW 283
FAV+ P+ +R +R++L ++W
Sbjct: 243 FAVMHPREYRALRSELDTIW 262
>gi|307103379|gb|EFN51640.1| hypothetical protein CHLNCDRAFT_59199 [Chlorella variabilis]
Length = 1290
Score = 225 bits (574), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 181/515 (35%), Positives = 246/515 (47%), Gaps = 87/515 (16%)
Query: 323 LSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGI--ALTSLVACEEA 380
L K L++ V+PFD T F AK+ AG L L AC +
Sbjct: 745 LQAKLLIDTVLPFDA-------TTF-----------NIAKLRSGAGALRGLEVLQACAQL 786
Query: 381 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 440
L +E+ + S G+EV++ RLKSLYS F KM RK V + +VYDARALRVVV D G
Sbjct: 787 LMREI-GTESLASGLEVSVQGRLKSLYSTFRKMSRKAVPLSEVYDARALRVVVDDDGGRR 845
Query: 441 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 500
AI CY LL VHRL+ + GE DDYI PKPSGYQSLHTAV GP G +EVQ+RT
Sbjct: 846 QAEAIAACYKLLPAVHRLFRRVAGEEDDYIAQPKPSGYQSLHTAVIGPGGVPMEVQMRTS 905
Query: 501 KMHEYAEHGLAAHWLYKE---------TGNKLQSISSMDESDIEASSSLSKDTDDHNPLD 551
MH AE+G AAHW YKE G S+ + + + S+ + + D D
Sbjct: 906 SMHSDAEYGKAAHWAYKEKPAVPAVQLPGPAAPSLPAPSSASTSSGSATTSGSVDDE--D 963
Query: 552 TDLFQKYSSLKMGHPVIRV-EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPS 610
D + + GHP++ + G L V++ E GGR LL AVS V D RP+
Sbjct: 964 GD-----AGIAAGHPMLHIGPGGRLRDGVVVASEFGGRRLLCAVS---QEQRAVPDARPA 1015
Query: 611 FQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQI 670
E Y L + + + QP GD +E +TLC DG YH+ D+FG LPT +
Sbjct: 1016 PA----ERYRALLRYVEERGYFQPSQGDMTAAMELFTLCSDGKYHRIDRFGHKLPTVVVP 1071
Query: 671 THLTEEEESEYWAVVSAVFEGKPVDSVVSR------------------RSSDSVAPTSME 712
L EEEE+ A S++ + RS SV M+
Sbjct: 1072 LTLEEEEEAASAADASSLSGSAAAAVAGAAGSEGAAGGGGAGPAPEHIRSQSSVE-GEMD 1130
Query: 713 ASINNKVRLLRTMLRWEEQL----RSEASLRQS----------------KLGGKANGNPD 752
+NN++ LLR+ML W +L +E++L Q +L + G
Sbjct: 1131 -YMNNRIPLLRSMLEWGRELGASIAAESALAQEAAAGNDAAAIAAWTERQLAPQVQGADG 1189
Query: 753 SVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGL 787
+ +V+++ WP G I+R+ G+TA +GL
Sbjct: 1190 AGA--DVMVLIWPGGRILRVPRGTTAGTVIRDLGL 1222
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 102/233 (43%), Positives = 135/233 (57%), Gaps = 35/233 (15%)
Query: 86 FIVDGVDVTGYPIFNDEQVQKAIAFAKRAHH--------------GQFRKTGDPYLTHCI 131
++ GVD++G F VQ+A FA RAH GQ RKT PY++HC+
Sbjct: 345 LLLHGVDISGSRFFCRPIVQQAAEFAARAHRQAPAAAGGLEPGRRGQVRKTRTPYVSHCV 404
Query: 132 HTGRILAMLIPSSGK--RAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRL 189
T I+ L+ + + RA VVA +LHDV+DD G +EE FG +VA +VA VS+L
Sbjct: 405 ETALIVEGLLSPTEEDERAEAAVVAALLHDVLDDTEVEAGEVEELFGAQVASMVAKVSQL 464
Query: 190 SYINQLLRRHRRINVNQGTLGHE-------------------ELADRLHNMRTIYALPPA 230
S NQ++RR R+ Q T E +LADRLHNMRT++AL P
Sbjct: 465 STTNQIVRRRLRVESAQPTKEEEAQLRNMILTMVGEPLVIAIKLADRLHNMRTVFALSPE 524
Query: 231 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
K +AVA ET +WCSLA RLG++A+K+ELEDLCFAVLQP +R +R L +W
Sbjct: 525 KQQAVASETRRVWCSLAERLGMFAVKSELEDLCFAVLQPAEYRALRRQLDELW 577
>gi|424513407|emb|CCO66029.1| GTP pyrophosphokinase [Bathycoccus prasinos]
Length = 1103
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 189/363 (52%), Gaps = 69/363 (19%)
Query: 213 ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 272
++A+RLHNMRT+YAL P KA VA ETL +WCS A +LG+W +K+ELED+CFAVL+P+ F
Sbjct: 379 KIAERLHNMRTLYALDPRKAETVADETLRVWCSFAEKLGIWTVKSELEDMCFAVLEPERF 438
Query: 273 RKMRADLASMWSPRNRVGYSR--RITTIVSSPPLDERTASD------------------- 311
++ W ++ G R ++ +ER +
Sbjct: 439 EEIVQSRDDFWLEESKRGRFRGKNFRGTIAPELQEERNEKEKAEKEALAFKTNQNKNNYV 498
Query: 312 ----------DESFTTFDEHVLSMKDLLEAVVPFDILSDR-----RKRTKFLHDLAKSSE 356
D S+T +E +++ L+ V PF+ L+ R R K L +
Sbjct: 499 MMDALDETERDPSWTRLNETQRALRRRLQCVQPFEALTTRDGGAMRIDEKVLRESPMRPA 558
Query: 357 AQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRK 416
+K +L +L + + + L + + + V +SSRLKSL+S KM+RK
Sbjct: 559 TKK----------SLEALAQWQNKMFQALRLD-GVVLNVNVRMSSRLKSLFSTSEKMKRK 607
Query: 417 DVGIHKVYDARALRVVVGD----KNGTLHGPA------------------IQCCYSLLDI 454
+V +VYD RA R+++GD T G I+ CY+LL+
Sbjct: 608 NVPFSEVYDGRATRIIIGDPVSASTMTSDGEGSASEFFDKDKLDSGLPSEIEACYALLNA 667
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH++ PI+GE+DDYI PK SGY+SLHTAV G DG LEVQIRT+ MH+ AE G+AAHW
Sbjct: 668 VHKINRPINGEYDDYITKPKKSGYKSLHTAVLGDDGKPLEVQIRTRGMHDAAEWGVAAHW 727
Query: 515 LYK 517
LYK
Sbjct: 728 LYK 730
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 23/129 (17%)
Query: 87 IVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIP---- 142
+V GVDVT +PIF DE V KA+ FA+ H GQ RKTG+PY+TH + RILA +P
Sbjct: 183 VVQGVDVTLFPIFKDEVVLKAVKFAEEKHKGQSRKTGEPYVTHLVEAARILAAALPEPRD 242
Query: 143 ------SSGKRAVDTVVAGILHDVVDDACESLGS-------------IEEEFGDEVAKLV 183
++ ++ +T+ A +L +DD + ++E FGD A+LV
Sbjct: 243 QNKFGSTTREKLRETISACLLVATLDDPNSKSSNLLKGETNDRIKDELKENFGDATAELV 302
Query: 184 AGVSRLSYI 192
+R+ +
Sbjct: 303 LQAARMGKL 311
>gi|414870236|tpg|DAA48793.1| TPA: hypothetical protein ZEAMMB73_708443 [Zea mays]
Length = 713
Score = 216 bits (549), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 155/448 (34%), Positives = 212/448 (47%), Gaps = 118/448 (26%)
Query: 98 IFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGIL 157
IF DE V KA A+RAH GQ R +GDPYL HC+ T LA + G A V AG+L
Sbjct: 213 IFRDELVVKAFKEAERAHRGQKRASGDPYLQHCVETAVHLANI----GANAT-VVSAGLL 267
Query: 158 HDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHR---------RINVNQGT 208
HD +DD+ I FG VA LV GVS+LS++++L R + R++
Sbjct: 268 HDTIDDSFMDYDHIFRMFGAGVADLVEGVSKLSHLSKLARDNNTASRTVEADRLHTMFLA 327
Query: 209 LGHE-----ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLC 263
+ +LADRLHNM TI ALP K + A+ET+ I+ LA+RLG+ + K LE++C
Sbjct: 328 MADARAVLIKLADRLHNMNTIEALPLVKQQRFAKETMEIFVPLANRLGIASWKDHLENIC 387
Query: 264 FAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVL 323
F L P+ +++ + L +FDE +L
Sbjct: 388 FKHLNPEEHKELSSKL-----------------------------------LMSFDEALL 412
Query: 324 SMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEK 383
T LH+L KS ++D GI+ S
Sbjct: 413 ---------------------TSTLHNLDKS---------LRDEGISYHS---------- 432
Query: 384 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 443
LS R KSLYSI+SKM +K++ + V+D LR+VV +
Sbjct: 433 ---------------LSGRHKSLYSIYSKMIKKNLTMDDVHDIHGLRLVVETEED----- 472
Query: 444 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 503
CY LDIVH+LW + G F DYI +PK +GY+SLHT + E+QIRT++MH
Sbjct: 473 ----CYRALDIVHKLWPRVTGRFKDYICHPKLNGYRSLHTVIMCEGVHPFEIQIRTKEMH 528
Query: 504 EYAEHGLAAHWLYKETGNKLQSISSMDE 531
AE+G AAHW YKE G + + M E
Sbjct: 529 LQAEYGFAAHWRYKEGGCRHSFVLQMVE 556
>gi|320449341|ref|YP_004201437.1| GTP pyrophosphokinase [Thermus scotoductus SA-01]
gi|320149510|gb|ADW20888.1| GTP pyrophosphokinase [Thermus scotoductus SA-01]
Length = 667
Score = 189 bits (480), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 155/478 (32%), Positives = 227/478 (47%), Gaps = 101/478 (21%)
Query: 75 LWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTG 134
LW KLE ++D + P + E+V++A FA+ AH GQ RK+G+PY+TH +
Sbjct: 7 LWDKLES-----LLDYL-----PPQDREKVREAYRFAEEAHRGQLRKSGEPYITHPVAVA 56
Query: 135 RILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQ 194
ILA L + DTV+AG+LHD ++D + +E FG V +LV G +++S + +
Sbjct: 57 EILASL-----RMDADTVMAGLLHDTLEDCGVAPEELERRFGPAVRRLVEGETKVSKLYK 111
Query: 195 LLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 254
L N+ G E+ A+ L M A+A++ +I LA RL
Sbjct: 112 L------ANLE----GEEKRAEDLRQMFI----------AMAEDVRIIIVKLADRL---- 147
Query: 255 LKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDD-- 312
+ T+ PP +R + +
Sbjct: 148 --------------------------------------HNLRTLEHMPPEKQRRIAQETL 169
Query: 313 ESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALT 372
E + H L M L + LS R + H L + ++A+ I
Sbjct: 170 EIYAPLA-HRLGMGQL---KWELEDLSFRYLHPEAYHALLSRIQETQEAR----EQIIRK 221
Query: 373 SLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 432
++VA EEAL ++ L+ + G+EVT R K LYSI+ KM R+ + ++YD A+RV+
Sbjct: 222 AMVALEEALRRDELLQAQ-LQGLEVT--GRPKHLYSIWKKMEREGKALEQIYDLLAVRVI 278
Query: 433 VGDKNG-TLHGPAI---QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGP 488
+ K T G A+ Q CY +L +VH LW PI G DYI PKP+GYQSLHT V
Sbjct: 279 LDPKPAPTEEGRALREKQVCYHVLGLVHALWQPIPGRVKDYIAVPKPNGYQSLHTTVIAL 338
Query: 489 DGSALEVQIRTQKMHEYAEHGLAAHWLYK-------ETGNKLQSISSMDESDIEASSS 539
+G LEVQIRT++MH AE+G+AAHWLYK E ++ + S+ E E SSS
Sbjct: 339 EGLPLEVQIRTREMHRIAEYGIAAHWLYKEGLTDPEELKRRVSWLKSIQEWQQEFSSS 396
>gi|449467867|ref|XP_004151644.1| PREDICTED: uncharacterized LOC101208449, partial [Cucumis sativus]
Length = 186
Score = 186 bits (471), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 85/103 (82%), Positives = 94/103 (91%)
Query: 45 HGAVTSAITHVAVTAVAIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQV 104
HGAVTSAITHVAVTAVAIASGACLSTKVDFLWPK+EEQPG+ ++DGVDVTGY IF D +V
Sbjct: 84 HGAVTSAITHVAVTAVAIASGACLSTKVDFLWPKVEEQPGSLVLDGVDVTGYLIFEDTKV 143
Query: 105 QKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKR 147
QKAI FAK+AHHGQ RKTGDPYLTHCIHTG+ILA L+P +G R
Sbjct: 144 QKAIEFAKKAHHGQLRKTGDPYLTHCIHTGKILAALVPPTGNR 186
>gi|115476746|ref|NP_001061969.1| Os08g0457600 [Oryza sativa Japonica Group]
gi|33354141|dbj|BAC81140.1| plastid (p)ppGpp synthase [Oryza sativa Japonica Group]
gi|42408400|dbj|BAD09583.1| plastid (p)ppGpp synthase [Oryza sativa Japonica Group]
gi|113623938|dbj|BAF23883.1| Os08g0457600 [Oryza sativa Japonica Group]
gi|215694336|dbj|BAG89329.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704598|dbj|BAG94226.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201251|gb|EEC83678.1| hypothetical protein OsI_29472 [Oryza sativa Indica Group]
gi|222640676|gb|EEE68808.1| hypothetical protein OsJ_27564 [Oryza sativa Japonica Group]
Length = 718
Score = 183 bits (465), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 154/436 (35%), Positives = 209/436 (47%), Gaps = 94/436 (21%)
Query: 98 IFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGIL 157
IF+DE V KA A+RAH GQ R +GDPYL HC+ T +LA + G A V AG+L
Sbjct: 215 IFHDELVVKAFFEAERAHRGQTRASGDPYLQHCVETAVLLAKI----GANAT-VVSAGLL 269
Query: 158 HDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADR 217
HD +DD+ I FG VA LV GVS+LS++++L R + T ADR
Sbjct: 270 HDTIDDSFMDYDQIFRMFGAGVADLVEGVSKLSHLSKLAR-------DNNTASRTVEADR 322
Query: 218 LHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMR 276
LH M L A ARAV LI LA RL + ++A +++ Q F K
Sbjct: 323 LHTM----FLAMADARAV-----LI--KLADRLHNMKTIEA------LPLVKQQRFAK-- 363
Query: 277 ADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPF 335
+ ++ P NR+G + S KD LE + F
Sbjct: 364 -ETMEIFVPLANRLG-------------------------------IASWKDQLENIC-F 390
Query: 336 DILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGM 395
L+ + E K + D + ++L ++ L E SY
Sbjct: 391 KHLNPEEHK-----------ELSSKLVISFDEALLTSTLDKLDKGLRDE---GISYH--- 433
Query: 396 EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIV 455
+LS R KSLYSI+SKM +K++ + V+D LR+VV + Q CY LDIV
Sbjct: 434 --SLSGRHKSLYSIYSKMIKKNLTMDDVHDIHGLRLVVDTE---------QDCYQALDIV 482
Query: 456 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 515
H+LW + G F DYI++PK +GY+SLHT + EVQIRT++MH AE+G AAHW
Sbjct: 483 HKLWPRVAGRFKDYILHPKLNGYRSLHTVIMCEGIHPFEVQIRTKEMHLQAEYGFAAHWR 542
Query: 516 YKETGNKLQSISSMDE 531
YKE G K + M E
Sbjct: 543 YKEGGCKHSFVLQMVE 558
>gi|159885638|dbj|BAF93196.1| putative relA/spoT homologous protein RSH2 [Hordeum vulgare]
Length = 139
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/150 (60%), Positives = 111/150 (74%), Gaps = 20/150 (13%)
Query: 440 LHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRT 499
LHGPA + CY++LDIVHRLW PIDGEFDDYI+NPK SGYQSLHTAVQ D S LEVQIRT
Sbjct: 1 LHGPAARSCYNILDIVHRLWTPIDGEFDDYIINPKGSGYQSLHTAVQASDSSPLEVQIRT 60
Query: 500 QKMHEYAEHGLAAHWLYKET--------GNKLQSISSMDESDIEASSSLSKDTDDHNPLD 551
Q+MHEYAE+GLAAHWLYKE+ GNK++ +S + ASSS + D P
Sbjct: 61 QRMHEYAEYGLAAHWLYKESNVNTGSGMGNKIK------QSTLYASSSSEDEITDGVP-- 112
Query: 552 TDLFQKYSSLKMGHPVIRVEGSNLLAAVII 581
KY S+K+GHPV+R++G++LLAAVI+
Sbjct: 113 ----SKYISMKVGHPVLRIDGNHLLAAVIV 138
>gi|410696071|gb|AFV75139.1| (p)ppGpp synthetase, RelA/SpoT family [Thermus oshimai JL-2]
Length = 732
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 146/450 (32%), Positives = 223/450 (49%), Gaps = 91/450 (20%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
QV+ A FA+ AH GQ R++G+PY+TH + ILA L + +TV+AG+LHDVV+
Sbjct: 31 QVEAAYRFAEAAHAGQRRRSGEPYITHPVAVAEILASL-----RMDAETVMAGLLHDVVE 85
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMR 222
D + +E FG V ++V G +++S + ++ N+ G E A+ L M
Sbjct: 86 DCGVAPEELERRFGAGVRRIVEGETKVSKLYKM------ANLE----GEERRAEDLRQMF 135
Query: 223 TIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLAS 281
A+A++ +I LA RL L L+ + P+ R++ +
Sbjct: 136 I----------AMAEDVRIIIVKLADRLHNLRTLEH---------MPPEKQRRIAQETLE 176
Query: 282 MWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSD 340
+++P +R+G + + +D SF H + + LLE
Sbjct: 177 IYAPLAHRLGMGQIKWEL------------EDLSFRYL--HPEAYQSLLE---------- 212
Query: 341 RRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLS 400
L + EA++K + ++ +EALEK+ L+ I G EVT
Sbjct: 213 ---------RLKEGQEAREK--------LVERAMARLKEALEKDELLQAQ-IQGFEVT-- 252
Query: 401 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDK-NGTLHGPAI---QCCYSLLDIVH 456
R K LYSI+ KM R+ + ++YD A+RV++ K + T ++ Q CY +L +VH
Sbjct: 253 GRPKHLYSIWKKMEREGKALEQIYDLLAVRVILDPKPSATEEARSLREKQVCYHVLGLVH 312
Query: 457 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 516
LW PI G DYI PKP+GYQSLHT V +G LEVQIRT++MH+ AE+G+AAHWLY
Sbjct: 313 ALWQPIPGRVKDYIAVPKPNGYQSLHTTVIALEGLPLEVQIRTREMHKVAEYGIAAHWLY 372
Query: 517 K-------ETGNKLQSISSMDESDIEASSS 539
K E ++ + S+ E E SSS
Sbjct: 373 KEGLTDPEEVKRRVSWLKSIQEWQQEFSSS 402
>gi|145336732|ref|NP_564652.2| RELA/SPOT homolog 3 [Arabidopsis thaliana]
gi|4587556|gb|AAD25787.1|AC006577_23 Similar to gi|1653162 (p)ppGpp 3-pyrophosphohydrolase from
Synechocystis sp genome gb|D90911. EST gb|W43807 comes
from this gene [Arabidopsis thaliana]
gi|110742595|dbj|BAE99211.1| RSH3 [Arabidopsis thaliana]
gi|332194932|gb|AEE33053.1| RELA/SPOT homolog 3 [Arabidopsis thaliana]
Length = 715
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 148/434 (34%), Positives = 202/434 (46%), Gaps = 96/434 (22%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF DE V KA A++AH GQ R TGDPYL HC+ T AML+ G + VVAG
Sbjct: 207 HKIFEDESVIKAFYEAEKAHRGQMRATGDPYLQHCVET----AMLLADIGANST-VVVAG 261
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
ILHD +DD+ S I FG VA LV GVS+LS +++L R + N T+ A
Sbjct: 262 ILHDTLDDSFMSYDYILRTFGSGVADLVEGVSKLSQLSKLAREN---NTACKTVE----A 314
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
DRLH M L A ARA + LA RL + L P ++
Sbjct: 315 DRLHTM----FLAMADARA-------VLIKLADRLH--------NMMTLYALPPVKRQRF 355
Query: 276 RADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTF--DEHVLSMKDLLEAV 332
+ +++P NR+G S + ++ F D+H M D+LE
Sbjct: 356 AKETLEIFAPLANRLGIS------------SWKVKLENLCFKHLHPDQH-HEMSDMLEDS 402
Query: 333 VPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYI 392
D + +++ E+AL+KE SY
Sbjct: 403 F--------------------------------DEAMITSAIEKLEQALKKE---GISY- 426
Query: 393 PGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLL 452
+S R KSLYSI+ KM +K + + +++D LR++V ++ CY L
Sbjct: 427 ----HVVSGRHKSLYSIYCKMLKKKLTMDEIHDIHGLRLIVDNEKD---------CYKAL 473
Query: 453 DIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAA 512
+VH+LW + G+ DYI +PK +GYQSLHT V G LEVQIRT++MH AE G AA
Sbjct: 474 GVVHKLWSEVPGKLKDYISHPKFNGYQSLHTVVMGDGTIPLEVQIRTKEMHLQAEFGFAA 533
Query: 513 HWLYKETGNKLQSI 526
HW YKE K S
Sbjct: 534 HWRYKEGDCKHSSF 547
>gi|224054061|ref|XP_002298089.1| predicted protein [Populus trichocarpa]
gi|222845347|gb|EEE82894.1| predicted protein [Populus trichocarpa]
Length = 716
Score = 179 bits (454), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 151/433 (34%), Positives = 211/433 (48%), Gaps = 95/433 (21%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF D+ V KA A++AH GQ R +GDPYL HC+ T +LA++ +S V AG
Sbjct: 225 HTIFCDDFVIKAFHEAEKAHRGQMRASGDPYLQHCVETAVLLAIIGANS-----TVVAAG 279
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
+LHD +DD+ S I + FG VA LV GVS+LS +++L R + N T+ A
Sbjct: 280 LLHDTLDDSFISYDHIFKTFGAGVADLVEGVSKLSQLSKLAREN---NTASKTVE----A 332
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRK 274
DRLH M L A ARAV LI LA RL + L A +++ Q F K
Sbjct: 333 DRLHTM----FLAMADARAV-----LI--KLADRLHNMMTLDA------LPLVKQQRFAK 375
Query: 275 MRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVV 333
+ + +++P NR+G S S K+ LE +
Sbjct: 376 ---ETSEIFAPLANRLGIS-------------------------------SWKEQLENLC 401
Query: 334 PFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIP 393
+ D+ K DL+ A++V A+ + + +E LEK L
Sbjct: 402 FKHLNPDQHK------DLS--------ARLVDSFDEAM--IASAKEKLEKALTDE----- 440
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
+ LS R KSLYS + KM +K + + +++D LR++V + CY L
Sbjct: 441 AISYDLSGRHKSLYSTYCKMLKKKLNMDQIHDIHGLRLIVENNED---------CYRALR 491
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+V RLW + G+F DYI NPK +GY+SLHT V G LEVQIRT++MH AE G AAH
Sbjct: 492 VVQRLWSEVPGKFKDYINNPKFNGYRSLHTVVMGEGTVPLEVQIRTREMHLQAEFGFAAH 551
Query: 514 WLYKETGNKLQSI 526
W YKE +K S
Sbjct: 552 WRYKEGDSKHSSF 564
>gi|297847822|ref|XP_002891792.1| hypothetical protein ARALYDRAFT_892466 [Arabidopsis lyrata subsp.
lyrata]
gi|297337634|gb|EFH68051.1| hypothetical protein ARALYDRAFT_892466 [Arabidopsis lyrata subsp.
lyrata]
Length = 715
Score = 179 bits (454), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 148/432 (34%), Positives = 201/432 (46%), Gaps = 92/432 (21%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF DE V KA A++AH GQ R GDPYL HC+ T AML+ G + VVAG
Sbjct: 207 HKIFEDESVIKAFYEAEKAHRGQMRANGDPYLQHCVET----AMLLADIGANST-VVVAG 261
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
ILHD +DD+ S I FG VA LV GVS+LS +++L R + N T+ A
Sbjct: 262 ILHDTLDDSFMSYDYILRTFGSGVADLVEGVSKLSQLSKLAREN---NTACKTVE----A 314
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
DRLH M L A ARA + LA RL + L P ++
Sbjct: 315 DRLHTM----FLAMADARA-------VLIKLADRLH--------NMMTLYALPPVKQQRF 355
Query: 276 RADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVP 334
+ +++P NR+G S S K LE +
Sbjct: 356 AKETLEIFAPLANRLGIS-------------------------------SWKVELENMCF 384
Query: 335 FDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPG 394
+ D+ H+++ E ++ A + E+AL+KE SY
Sbjct: 385 KHLYPDQH------HEMSDMLEDSFNEAMITSA------IGKLEQALKKE---GISY--- 426
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
LS R KSLYSI+ KM +K + + +++D LR++V ++ CY L +
Sbjct: 427 --HVLSGRHKSLYSIYCKMLKKKLTMDEIHDIHGLRLIVDNEKD---------CYKALGV 475
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH+LW + G+ DYI +PK +GYQSLHT V G LEVQIRT++MH AE G AAHW
Sbjct: 476 VHKLWSEVPGKLKDYISHPKFNGYQSLHTVVMGDGTIPLEVQIRTKEMHLQAEFGFAAHW 535
Query: 515 LYKETGNKLQSI 526
YKE K S
Sbjct: 536 RYKEGDCKHSSF 547
>gi|15822693|gb|AAL03950.1| relA/spoT-like protein RSH2 [Nicotiana tabacum]
Length = 643
Score = 179 bits (453), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 154/435 (35%), Positives = 207/435 (47%), Gaps = 98/435 (22%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF D+ V KA A++AH GQ R +GDPYL HC+ T +LAM+ +S V AG
Sbjct: 211 HKIFCDDFVIKAFYEAEKAHRGQVRASGDPYLQHCVETAVLLAMIGANS-----TVVAAG 265
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
+LHD +DD + I G VA LV GVS+LS QL + R N T+ A
Sbjct: 266 LLHDTLDDTFMTYDYIFRTLGAGVADLVEGVSKLS---QLSKLARDFNTASKTVE----A 318
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRK 274
DRLH M L A ARAV LI LA RL + L A + + Q F K
Sbjct: 319 DRLHTM----FLAMADARAV-----LI--KLADRLHNMMTLDA------LPLAKQQRFAK 361
Query: 275 MRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVV 333
+ +++P NR+G S + K+ LE +
Sbjct: 362 ---ETLEIFAPLANRLGIS-------------------------------TWKEQLENLC 387
Query: 334 PFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQ--DAGIALTSLVACEEALEKELLISTSY 391
F H L + +K+V+ D + +S+ E+AL+ + S SY
Sbjct: 388 -------------FKH-LNPDQHNELSSKLVKSFDEAMITSSVGKLEQALKDD---SVSY 430
Query: 392 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 451
LS R KSLYSI+ KM +K + + +V+D LR++V +K CY
Sbjct: 431 H-----VLSGRHKSLYSIYCKMLKKKLNMDEVHDIHGLRLIVENKED---------CYKA 476
Query: 452 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 511
L +VH+LW + G + DYI NPK +GYQSLHT V G LEVQIRT++MH AE+G A
Sbjct: 477 LRVVHQLWSEVPGRYKDYIANPKFNGYQSLHTVVLGEGMVPLEVQIRTKEMHLQAEYGFA 536
Query: 512 AHWLYKETGNKLQSI 526
AHW YKE K S
Sbjct: 537 AHWRYKEGACKHSSF 551
>gi|33637487|gb|AAQ23899.1| RSH2 [Nicotiana tabacum]
Length = 718
Score = 179 bits (453), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 154/435 (35%), Positives = 208/435 (47%), Gaps = 98/435 (22%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF D+ V KA A++AH GQ R +GDPYL HC+ T +LAM+ +S V AG
Sbjct: 211 HKIFCDDFVIKAFYEAEKAHRGQVRASGDPYLQHCVETAVLLAMIGANS-----TVVAAG 265
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
+LHD +DD + I G VA LV GVS+LS QL + R N T+ A
Sbjct: 266 LLHDTLDDTFMTYDYIFRTLGAGVADLVEGVSKLS---QLSKLARDFNTASKTVE----A 318
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRK 274
DRLH M L A ARAV LI LA RL + L A + + Q F K
Sbjct: 319 DRLHTM----FLAMADARAV-----LI--KLADRLHNMMTLDA------LPLAKQQRFAK 361
Query: 275 MRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVV 333
+ +++P NR+G S + K+ LE +
Sbjct: 362 ---ETLEIFAPLANRLGIS-------------------------------TWKEQLENLC 387
Query: 334 PFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQ--DAGIALTSLVACEEALEKELLISTSY 391
F H L + +K+V+ D + +S+ E+AL+ + S SY
Sbjct: 388 -------------FKH-LNPDQHNELSSKLVKSFDEAMITSSVGKLEQALKDD---SVSY 430
Query: 392 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 451
LS R KSLYSI+ KM +K + + +V+D LR++V +K + CY
Sbjct: 431 H-----VLSGRHKSLYSIYCKMLKKKLNMDEVHDIHGLRLIVENK---------EDCYKA 476
Query: 452 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 511
L +VH+LW + G + DYI NPK +GYQSLHT V G LEVQIRT++MH AE+G A
Sbjct: 477 LRVVHQLWSEVPGRYKDYIANPKFNGYQSLHTVVLGEGMVPLEVQIRTKEMHLQAEYGFA 536
Query: 512 AHWLYKETGNKLQSI 526
AHW YKE K S
Sbjct: 537 AHWRYKEGACKHSSF 551
>gi|289434803|ref|YP_003464675.1| GTP pyrophosphokinase [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289171047|emb|CBH27589.1| GTP pyrophosphokinase [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 738
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 137/428 (32%), Positives = 202/428 (47%), Gaps = 97/428 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA+ +H QFRK+G+PY+ H I IL L K TV +G LHDVV+D
Sbjct: 28 VKKAYEFARDSHKEQFRKSGEPYIIHPIQVAGILVEL-----KMDPSTVASGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L +EEEFG EVA LV GV++L I HEE + N R
Sbjct: 83 TPVTLADLEEEFGSEVAMLVDGVTKLGKIK--------------YKSHEE--QQAENHRK 126
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
++ A+AQ+ +I LA RL + L ++ Q R++ + ++
Sbjct: 127 MFI-------AMAQDIRVILIKLADRL------HNMRTLKHLPVEKQ--RRIANETLEIF 171
Query: 284 SP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
+P +R+G SR + + L R + + + H++ K R
Sbjct: 172 APLAHRLGISR-VKWELEDTAL--RYLNPQQYYRIV--HLMKQK--------------RD 212
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
R ++LHD V+ L L ++ +S R
Sbjct: 213 ARERYLHD------------VIDGVNENLDEL-------------------NIQADISGR 241
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L I+H W P+
Sbjct: 242 PKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLGIIHTRWKPM 292
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAHW YKE G
Sbjct: 293 PGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAHWAYKE-GKV 351
Query: 523 LQSISSMD 530
+ S +S D
Sbjct: 352 VNSKTSFD 359
>gi|384440422|ref|YP_005655146.1| Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase (PpGpp
synthase) [Thermus sp. CCB_US3_UF1]
gi|359291555|gb|AEV17072.1| Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase (PpGpp
synthase) [Thermus sp. CCB_US3_UF1]
Length = 726
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 145/451 (32%), Positives = 214/451 (47%), Gaps = 91/451 (20%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E V+ A FA+ AH GQ RK+G+PY+TH + ILA L + +TV AG+LHD V
Sbjct: 24 EGVKAAYLFAEEAHRGQLRKSGEPYITHPVAVAEILASL-----RMDAETVAAGLLHDTV 78
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNM 221
+D + +E FG V ++V G +++S + +L N+ G E+ A+ L M
Sbjct: 79 EDCGVAPEELERRFGPGVRRIVEGETKVSKLYKL------ANLE----GEEKRAEDLRQM 128
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL-CFAVLQPQIFRKMRADLA 280
A+A++ +I LA R L +L + P R++ +
Sbjct: 129 FI----------AMAEDVRIIIVKLADR---------LHNLRTLEHMPPHKQRRIAQETL 169
Query: 281 SMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILS 339
+++P +R+G + + +D SF H + LL I
Sbjct: 170 EIYAPLAHRLGIGQLKWEL------------EDLSFRYL--HPEAYHALLS-----RIQE 210
Query: 340 DRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTL 399
+ R + +H ++ EEAL K+ L+ + G EVT
Sbjct: 211 TQEARERVIH----------------------RAMAILEEALRKDELLQAQ-LQGFEVT- 246
Query: 400 SSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG-TLHGPAI---QCCYSLLDIV 455
R K LYSI+ KM R+ + ++YD A+RV++ K T G A+ Q CY +L +V
Sbjct: 247 -GRPKHLYSIWKKMEREGKALEQIYDLLAVRVILDPKPAPTEEGQALREKQVCYHVLGLV 305
Query: 456 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 515
H LW PI G DYI PKP+GYQSLHT V +G LEVQIRT++MH AE+G+AAHWL
Sbjct: 306 HALWQPIPGRVKDYIAVPKPNGYQSLHTTVIALEGLPLEVQIRTREMHRVAEYGIAAHWL 365
Query: 516 YK-------ETGNKLQSISSMDESDIEASSS 539
YK E ++ + S+ E E SSS
Sbjct: 366 YKEGLTDPEEVKRRISWLRSIQEWQQEFSSS 396
Score = 39.3 bits (90), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 33/145 (22%)
Query: 689 FEGKPVDSVVSRRSSDSVAPTSMEA------------SINNKVRLLRTMLRWEEQLRSE- 735
EG P++ + R VA + A + ++ LR++ W+++ S
Sbjct: 338 LEGLPLEVQIRTREMHRVAEYGIAAHWLYKEGLTDPEEVKRRISWLRSIQEWQQEFSSSR 397
Query: 736 ---ASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLE-GKL 791
++ + LGG+ V V P G I+ L G+T D A + E G
Sbjct: 398 EFVEAVTRDLLGGR-------------VFVFTPKGRIINLPKGATPVDFAYHIHTEVGHH 444
Query: 792 VL---VNGQLVLPNTELKDGDIVEV 813
++ VNG++V + EL++G+IVE+
Sbjct: 445 MVGAKVNGRIVPLSYELQNGEIVEI 469
>gi|449461673|ref|XP_004148566.1| PREDICTED: GTP pyrophosphokinase-like [Cucumis sativus]
gi|449528710|ref|XP_004171346.1| PREDICTED: GTP pyrophosphokinase-like [Cucumis sativus]
Length = 733
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 145/434 (33%), Positives = 208/434 (47%), Gaps = 96/434 (22%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF DE V KA A++AH GQ R +GDPYL HC+ T +LA++ +S V AG
Sbjct: 231 HKIFCDEFVVKAFFEAEKAHRGQLRASGDPYLEHCVETAVMLALVGANS-----TVVAAG 285
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
+LHD +DD+ + I FG EVA LV GVS+LS++++L R H + + T+ A
Sbjct: 286 LLHDTIDDSFVTHDYILGTFGAEVADLVEGVSKLSHLSKLAREH---DTAERTVE----A 338
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRK 274
DRLH M L A ARAV LA RL + L A L P ++
Sbjct: 339 DRLHTM----FLAMADARAVL-------VKLADRLHNMMTLDA---------LPPIKQQR 378
Query: 275 MRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVV 333
+ ++ P NR+G + + K+ LE +
Sbjct: 379 FAKETMEIFVPLANRLG-------------------------------IYTWKEQLENMC 407
Query: 334 PFDILSDRRKRTKFLH-DLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYI 392
F H +L + + K + D I ++ E AL K+ IS +
Sbjct: 408 -------------FKHLNLEQHEDLSSKLLGLYDEAIIFSATQKLERAL-KDKGISYHVV 453
Query: 393 PGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLL 452
G R KS+YSI KM +K++ +++++D LR++V ++ + CY L
Sbjct: 454 TG-------RHKSVYSIHRKMLKKNLTVNEIHDIHGLRLIVENE---------EDCYEAL 497
Query: 453 DIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAA 512
IVH+LW + G+ DYI PK +GYQS+HT V+G LEVQIRT++MH AE G AA
Sbjct: 498 RIVHQLWPNVPGKLKDYISKPKLNGYQSIHTVVRGEGDVPLEVQIRTKEMHLQAEFGFAA 557
Query: 513 HWLYKETGNKLQSI 526
HW YKE +K S
Sbjct: 558 HWRYKEGDSKHSSF 571
>gi|37196706|dbj|BAC97801.1| RelA-SpoT like protein PsRSH1 [Pisum sativum]
Length = 729
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 149/432 (34%), Positives = 206/432 (47%), Gaps = 94/432 (21%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF +E V KA A++AH GQ R +GDPYL HC+ T +LA++ +S V AG
Sbjct: 219 HKIFCEEFVIKAFCEAEKAHRGQMRASGDPYLQHCLETAVLLALIGANS-----TVVAAG 273
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
+LHD +DDA + I FG VA LV GVS+LS++++L R + T A
Sbjct: 274 LLHDTLDDAFLTYDYIFGMFGAGVADLVGGVSKLSHLSKLAR-------DNNTASKSVEA 326
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRK 274
DRLH M L A ARAV LI LA RL + L A V + Q F K
Sbjct: 327 DRLHTM----FLAMADARAV-----LI--KLADRLHNMMTLDA------LPVAKQQRFAK 369
Query: 275 MRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVV 333
+ +++P NR+G + + K+ LE +
Sbjct: 370 ---ETLEIFAPLANRLG-------------------------------IANWKEQLENLC 395
Query: 334 PFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIP 393
K L+ + + K + DA IA +++ E+AL+ E SY
Sbjct: 396 -----------FKHLNPVQHMELSSKLVESYDDAMIA-SAINRLEQALKDE---GISY-- 438
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
+S R KSLYSI+ KM +K + I ++D LR++V + CY L
Sbjct: 439 ---HVISGRHKSLYSIYCKMLKKKLTIDDIHDIYGLRLIVEKEED---------CYKALK 486
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH+LW+ + G+ DYI PK +GYQSLHT V G LEVQ+RT+ MH AE G AAH
Sbjct: 487 VVHQLWLEVPGKLKDYIRGPKFNGYQSLHTVVMGEGKIPLEVQVRTKDMHSQAEFGFAAH 546
Query: 514 WLYKETGNKLQS 525
W YKE +L S
Sbjct: 547 WRYKEDHCQLSS 558
>gi|357514019|ref|XP_003627298.1| GTP pyrophosphokinase [Medicago truncatula]
gi|66947621|emb|CAJ00006.1| RelA-SpoT homolog 1 [Medicago truncatula]
gi|355521320|gb|AET01774.1| GTP pyrophosphokinase [Medicago truncatula]
Length = 726
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 150/432 (34%), Positives = 205/432 (47%), Gaps = 94/432 (21%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF +E V KA A++AH GQ R +GDPYL HC+ T +LA++ +S V AG
Sbjct: 215 HKIFCEEFVIKAFCEAEKAHRGQMRASGDPYLQHCLETAVLLALIGANS-----TVVAAG 269
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
+LHD VDDA + I FG VA LV GVS+LS++++L R + T A
Sbjct: 270 LLHDTVDDAFLTYDYIYGMFGAGVADLVEGVSKLSHLSKLAR-------DNNTASKSVEA 322
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRK 274
DRLH M L A ARAV LI LA RL + L A V + Q F K
Sbjct: 323 DRLHTM----FLAMADARAV-----LI--KLADRLHNMMTLDA------LPVAKQQRFAK 365
Query: 275 MRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVV 333
+ +++P NR+G + + KD LE +
Sbjct: 366 ---ETLEIFAPLANRLG-------------------------------IANWKDQLENLC 391
Query: 334 PFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIP 393
K L+ + + K + DA IA +++ E+AL+ E SY
Sbjct: 392 -----------FKHLNPVQHKELSSKLVESYDDAMIA-SAIERLEQALKDE---GISYH- 435
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
+S R KSLYS++ K+ +K + I ++D LR++V + CY L
Sbjct: 436 ----VISGRHKSLYSVYCKILKKKLTIDDIHDIYGLRLIVDKEED---------CYKALK 482
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VHRLW + G+ DYI PK +GYQSLHT V G LEVQ+RT+ MH AE G AAH
Sbjct: 483 VVHRLWSEVHGKLKDYIRFPKFNGYQSLHTVVMGEGKVPLEVQVRTKDMHLQAEFGFAAH 542
Query: 514 WLYKETGNKLQS 525
W YKE +L S
Sbjct: 543 WRYKEDHCQLSS 554
>gi|365873417|ref|ZP_09412950.1| (p)ppGpp synthetase, RelA/SpoT family [Thermanaerovibrio velox DSM
12556]
gi|363983504|gb|EHM09711.1| (p)ppGpp synthetase, RelA/SpoT family [Thermanaerovibrio velox DSM
12556]
Length = 760
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 130/423 (30%), Positives = 204/423 (48%), Gaps = 98/423 (23%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A+ FA AH Q R +G+PY+ H I ILA + + VDT+ A +LHDV++D
Sbjct: 65 EALVFAANAHRDQRRHSGEPYVVHSISVAAILADM-----ELDVDTLCAALLHDVLEDTE 119
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELAD-RLHNMRTI 224
++ FG++V +V GV++L G L + + D + N+R +
Sbjct: 120 IGKEEMQSRFGEDVVTMVDGVTKL-----------------GKLAFKSMEDYQAENLRKM 162
Query: 225 YALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
+ + +A++ ++ LA RL + L+A D + + + ++ A LA
Sbjct: 163 FLV-------MAKDIRVVLIKLADRLHNMRTLQAHRRDKQITIAKETL--EIYAPLA--- 210
Query: 284 SPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRK 343
+R+G + E ++DL ++ +I + R+
Sbjct: 211 ---HRLGI-----------------------YNVKRE----LEDLCFKILEPEIYYEIRR 240
Query: 344 RTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRL 403
R + K+ + I +L ++ L++E G+E +LS R
Sbjct: 241 RVR--------------KKLPEREAIIKQALDVLQQKLKEE---------GIEASLSGRP 277
Query: 404 KSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPID 463
K YSI+ KMRRK++ + ++YD ALRVVVG + CY +L +VH +W PI
Sbjct: 278 KHFYSIYEKMRRKNLSLEQLYDLLALRVVVG---------TVAECYQVLGLVHTIWKPIP 328
Query: 464 GEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKL 523
G+FDDYI NPK + YQSLHT V GP G LEVQIRT +MH AE+G+AAHW YKE ++
Sbjct: 329 GQFDDYIANPKSNMYQSLHTTVLGPSGEPLEVQIRTWEMHWLAEYGIAAHWHYKEGKRRV 388
Query: 524 QSI 526
I
Sbjct: 389 DQI 391
>gi|357514023|ref|XP_003627300.1| GTP pyrophosphokinase [Medicago truncatula]
gi|355521322|gb|AET01776.1| GTP pyrophosphokinase [Medicago truncatula]
Length = 682
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 150/432 (34%), Positives = 205/432 (47%), Gaps = 94/432 (21%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF +E V KA A++AH GQ R +GDPYL HC+ T +LA++ +S V AG
Sbjct: 215 HKIFCEEFVIKAFCEAEKAHRGQMRASGDPYLQHCLETAVLLALIGANS-----TVVAAG 269
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
+LHD VDDA + I FG VA LV GVS+LS++++L R + T A
Sbjct: 270 LLHDTVDDAFLTYDYIYGMFGAGVADLVEGVSKLSHLSKLAR-------DNNTASKSVEA 322
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRK 274
DRLH M L A ARAV LI LA RL + L A V + Q F K
Sbjct: 323 DRLHTM----FLAMADARAV-----LI--KLADRLHNMMTLDA------LPVAKQQRFAK 365
Query: 275 MRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVV 333
+ +++P NR+G + + KD LE +
Sbjct: 366 ---ETLEIFAPLANRLG-------------------------------IANWKDQLENLC 391
Query: 334 PFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIP 393
K L+ + + K + DA IA +++ E+AL+ E SY
Sbjct: 392 -----------FKHLNPVQHKELSSKLVESYDDAMIA-SAIERLEQALKDE---GISY-- 434
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
+S R KSLYS++ K+ +K + I ++D LR++V + CY L
Sbjct: 435 ---HVISGRHKSLYSVYCKILKKKLTIDDIHDIYGLRLIVDKEED---------CYKALK 482
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VHRLW + G+ DYI PK +GYQSLHT V G LEVQ+RT+ MH AE G AAH
Sbjct: 483 VVHRLWSEVHGKLKDYIRFPKFNGYQSLHTVVMGEGKVPLEVQVRTKDMHLQAEFGFAAH 542
Query: 514 WLYKETGNKLQS 525
W YKE +L S
Sbjct: 543 WRYKEDHCQLSS 554
>gi|210616270|ref|ZP_03291020.1| hypothetical protein CLONEX_03241 [Clostridium nexile DSM 1787]
gi|210149868|gb|EEA80877.1| hypothetical protein CLONEX_03241 [Clostridium nexile DSM 1787]
Length = 781
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 140/470 (29%), Positives = 221/470 (47%), Gaps = 105/470 (22%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + V+KA A AH GQFRK+G+ Y+ H + G ILA L +T+VAG
Sbjct: 60 HPSTDISMVEKAFNIAYHAHEGQFRKSGEAYIIHPLWVGIILADLELDK-----ETIVAG 114
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
ILHDVV+D + I E FG EVA LV GV++L Q + ++L
Sbjct: 115 ILHDVVEDTVMTEQEITEIFGSEVALLVDGVTKLG---------------QLSYSADKLE 159
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
+ N+R ++ A+A++ +I LA RL + L F + QI K
Sbjct: 160 VQAENLRKMFL-------AMAKDIRVILIKLADRL------HNMRTLQFMRPEKQI-EKA 205
Query: 276 RADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVP 334
R + +++P R+G SR +T DD S V DL++
Sbjct: 206 RETM-DIYAPIAQRLGISRI------------KTELDDLSLKYSQPEVFY--DLVQ---- 246
Query: 335 FDILSDRRKRTKFLHDLAKS-SEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIP 393
I + + +R +F+ + + SE K AK+
Sbjct: 247 -QINARKTEREEFVQQIVEEVSEHMKNAKI------------------------------ 275
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
+ + R+K +SI+ KM +D + ++YD A+R++V +++ CY+ L
Sbjct: 276 --KAEVKGRVKHFFSIYKKMVNQDKTVDQIYDLFAVRIIV---------ESVKDCYAALG 324
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
++H ++ PI G F DYI PKP+ YQSLHT + G E+QIRT++MH+ AE+G+AAH
Sbjct: 325 VIHEMYTPIPGRFKDYIAMPKPNMYQSLHTTLMSSVGQPFEIQIRTEEMHKTAEYGIAAH 384
Query: 514 WLYKETGNKLQSISSMDESDIEASSSL---SKDTDDHNPL-----DTDLF 555
W YKE+ + +S+++ +E + + +DTD+ L D DLF
Sbjct: 385 WKYKESNDGKKSVAAQEEEKLSWLRQILEWQQDTDNREFLSLLKGDLDLF 434
>gi|78044718|ref|YP_361036.1| GTP pyrophosphokinase [Carboxydothermus hydrogenoformans Z-2901]
gi|77996833|gb|ABB15732.1| GTP pyrophosphokinase [Carboxydothermus hydrogenoformans Z-2901]
Length = 716
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 132/424 (31%), Positives = 203/424 (47%), Gaps = 98/424 (23%)
Query: 99 FNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILH 158
++E ++KA FA AH GQ R +G+ Y+TH + ILA L +T+ AG+LH
Sbjct: 18 MDEELIKKAYNFAAEAHAGQKRASGEDYITHPLAVAFILAGLQMDD-----ETIAAGLLH 72
Query: 159 DVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRL 218
DVV+D ++ I EFG+EVA LV GV++LS I + +++
Sbjct: 73 DVVEDTAYTIEDIAREFGEEVANLVDGVTKLSRIEFKNKEEQQV---------------- 116
Query: 219 HNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRA 277
N+R ++ A+A++ +I LA RL + LK P+ +++
Sbjct: 117 ENLRKMFL-------AMAKDIRVILIKLADRLHNMRTLKYH---------NPEKQKEIAR 160
Query: 278 DLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFD 336
+ +++P +R+G R + +D +F D + D++E
Sbjct: 161 ETLEIFAPLAHRLGIYRI------------KWELEDLAFRYLDPD--NYYDIVEK----- 201
Query: 337 ILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGME 396
I R KR +++ + + EE L+ SY ++
Sbjct: 202 IAKTRAKREQYIQQV----------------------ISILEEKLK-------SY--NIK 230
Query: 397 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 456
+ R K LYSIF KMR + +VYD A+RV+V +++ CY++L I+H
Sbjct: 231 AKIEGRPKHLYSIFQKMREQQKDFSEVYDVMAVRVIV---------ESVRDCYTVLGIIH 281
Query: 457 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 516
+WIP+ G F DYI PK + YQSLHT V GP G LE+QIRT +MH AE+G+AAHW Y
Sbjct: 282 TMWIPVPGRFKDYIAMPKSNMYQSLHTTVIGPFGEPLEIQIRTFEMHRTAEYGIAAHWRY 341
Query: 517 KETG 520
KE G
Sbjct: 342 KEGG 345
Score = 41.2 bits (95), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 13/106 (12%)
Query: 712 EASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMR 771
+ + K+ LR +L W+ +L+ ++ K + DSV V P G+++
Sbjct: 348 DKKFDEKLSWLRQILEWQRELKDAREFMETL---KVDIFSDSV------FVFTPKGDVVE 398
Query: 772 LRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
L +GS D A + VG VNG+LV + +LK+GDIVE+
Sbjct: 399 LPAGSVPIDFAYRIHTDVGNRCVGAKVNGRLVPLDYQLKNGDIVEI 444
>gi|325662331|ref|ZP_08150940.1| hypothetical protein HMPREF0490_01679 [Lachnospiraceae bacterium
4_1_37FAA]
gi|331086134|ref|ZP_08335216.1| hypothetical protein HMPREF0987_01519 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|325471333|gb|EGC74556.1| hypothetical protein HMPREF0490_01679 [Lachnospiraceae bacterium
4_1_37FAA]
gi|330406293|gb|EGG85807.1| hypothetical protein HMPREF0987_01519 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 767
Score = 177 bits (448), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 129/445 (28%), Positives = 211/445 (47%), Gaps = 103/445 (23%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + ++KA AK+AH GQ RK+G+PY+ H + G ILA L + +T+VAG
Sbjct: 44 HPSADISMIEKAYRIAKQAHEGQKRKSGEPYIIHPLWVGIILAEL-----EMDKETIVAG 98
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
ILHD V+D + IE EFG EVA LV GV++L G L + +
Sbjct: 99 ILHDAVEDTIMTRDDIEREFGAEVALLVEGVTKL-----------------GQLSYSKDV 141
Query: 216 DRLH----NMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
D++ N+R ++ A++++ +I LA RL
Sbjct: 142 DKMELQAENLRKMFL-------AMSKDIRVIIVKLADRL--------------------- 173
Query: 272 FRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEA 331
MR A W P + +R I + P+ +R + +K L
Sbjct: 174 -HNMRT--AQFWPPHKQKEKARETMDIYA--PIAQRLG------------ISKIKKEL-- 214
Query: 332 VVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSY 391
D L+ + + + +DL K +K + EE +++ + S+
Sbjct: 215 ----DDLALKYYQPEVFYDLVKQINDRKTER---------------EEFVQQIVDEVASH 255
Query: 392 IPGMEVT--LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCY 449
+ ++ + R+K +SI+ KM +D + +VYD A+R++V ++ CY
Sbjct: 256 MKNADIQAEVYGRVKHFFSIYKKMVNQDKTVDQVYDLFAVRIIVD---------TVKDCY 306
Query: 450 SLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHG 509
+ L ++H ++ PI G F DYI PK + YQSLHT + GP G E+QIRT++MH+ AE+G
Sbjct: 307 AALGVIHEMYTPIPGRFKDYIAMPKANMYQSLHTTLMGPAGQPFEIQIRTKEMHKTAEYG 366
Query: 510 LAAHWLYKETGNKLQSISSMDESDI 534
+AAHW YKE+G+ ++I+ +E +
Sbjct: 367 IAAHWKYKESGDGKKNIAMQEEEKL 391
>gi|291549196|emb|CBL25458.1| (p)ppGpp synthetase, RelA/SpoT family [Ruminococcus torques L2-14]
Length = 773
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 201/419 (47%), Gaps = 97/419 (23%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA K AH QFRK+G+PY+ H + ILA L + +T+VAG+LHDVV+D
Sbjct: 60 IEKAYQIGKEAHKNQFRKSGEPYIIHPLWVAIILADL-----EMDKETIVAGMLHDVVED 114
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L I EFG+EVA LV GV++L +N ++L + N+R
Sbjct: 115 TTMTLDEISAEFGEEVALLVDGVTKLGQLN---------------YSQDKLEAQAENLRK 159
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
++ A+A++ +I LA RL + + F + P ++ + ++
Sbjct: 160 MFL-------AMAKDIRVIIVKLADRL------HNMRTMEF--MTPAKQKEKSRETMDIY 204
Query: 284 SP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
+P R+G S+ +T DD S + V + + D+ + +
Sbjct: 205 APIAQRLGISKI------------KTELDDLSLKYYQPEVYNQ-------LVHDLNARKT 245
Query: 343 KRTKFLHDL-AKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
+R +F+ + A+ S+ K A + E +
Sbjct: 246 EREEFVQQIVAEVSKHMKNADI--------------------------------EAKVYG 273
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R+K +SI+ KM ++ + +VYD A+R++V +++ CY+ L ++H ++ P
Sbjct: 274 RVKHFFSIYKKMVNQNKTLDQVYDLFAVRIIV---------DSVKDCYAALGVIHEMYTP 324
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 520
I G F DYI PK + YQSLHT + GP G E+QIRT++MH+ AE+G+AAHW YKETG
Sbjct: 325 IPGRFKDYIAMPKANMYQSLHTTLIGPSGQPFEIQIRTEEMHKTAEYGIAAHWKYKETG 383
>gi|291297171|ref|YP_003508569.1| (p)ppGpp synthetase I SpoT/RelA [Meiothermus ruber DSM 1279]
gi|290472130|gb|ADD29549.1| (p)ppGpp synthetase I, SpoT/RelA [Meiothermus ruber DSM 1279]
Length = 750
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 142/423 (33%), Positives = 211/423 (49%), Gaps = 81/423 (19%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
QV++A+ FA RAH GQ RK+G+PY+ H + +ILA L V+T++AG+LHD ++
Sbjct: 41 QVREALEFAYRAHEGQQRKSGEPYIVHPVAVAQILAEL-----GLDVETLLAGLLHDTIE 95
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMR 222
D IEE FG V K+V G +++S + +L + +G H E ++R
Sbjct: 96 DTEVRPEDIEERFGAAVRKIVEGETKVSKLYKLAHAAQEDKHAEGK--HAE------DLR 147
Query: 223 TIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
++ A+A++ +I LA RL L L F + P +++ + +
Sbjct: 148 QMFI-------AMAEDVRIIIVKLADRL------HNLRTLEF--MPPHKQQRIARETLEI 192
Query: 283 WSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
++P +R+G + + +D SF D P + +
Sbjct: 193 YAPLAHRLGIGQVKLEL------------EDLSFRYLD--------------PENYQALE 226
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
R+ KS A+++A VQ A L E+AL ++ ++ S I EVT
Sbjct: 227 RR--------LKSHRAEREA-AVQAAKEKL------EQALARDFILKQS-IKKFEVT--G 268
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPA------IQCCYSLLDIV 455
R K L+SI+ KM R+ I ++YD ALRV++ + G P Q CY +L +V
Sbjct: 269 RTKHLFSIWKKMEREGKTIEQIYDLLALRVILDPRQGP--DPEENSLREKQVCYHVLGLV 326
Query: 456 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 515
H LW PI G DYI PKP+GYQSLHT V +G LEVQIRT++MH AE G+AAHWL
Sbjct: 327 HALWQPIPGRVKDYIAVPKPNGYQSLHTTVIAVNGLPLEVQIRTREMHRVAEFGVAAHWL 386
Query: 516 YKE 518
YKE
Sbjct: 387 YKE 389
>gi|16800626|ref|NP_470894.1| hypothetical protein lin1558 [Listeria innocua Clip11262]
gi|422413014|ref|ZP_16489973.1| GTP diphosphokinase [Listeria innocua FSL S4-378]
gi|16414045|emb|CAC96789.1| relA [Listeria innocua Clip11262]
gi|313618809|gb|EFR90701.1| GTP diphosphokinase [Listeria innocua FSL S4-378]
Length = 738
Score = 176 bits (447), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 136/428 (31%), Positives = 202/428 (47%), Gaps = 97/428 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA+ +H QFRK+G+PY+ H I IL L K TV +G LHDVV+D
Sbjct: 28 VKKAYEFARDSHKEQFRKSGEPYIIHPIQVAGILVEL-----KMDPSTVASGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L +EE FG+EVA LV GV++L I HEE + N R
Sbjct: 83 TPVTLADLEEVFGEEVAMLVDGVTKLGKIK--------------YKSHEE--QQAENHRK 126
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
++ A+AQ+ +I LA RL + L ++ Q R++ + ++
Sbjct: 127 MFI-------AMAQDIRVILIKLADRL------HNMRTLKHLPVEKQ--RRIANETLEIF 171
Query: 284 SP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
+P +R+G SR + + L R + + + H++ K R
Sbjct: 172 APLAHRLGISR-VKWELEDTAL--RYLNPQQYYRIV--HLMKQK--------------RD 212
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
R ++LHD V+ L L ++ +S R
Sbjct: 213 ARERYLHD------------VIDGVNENLDEL-------------------NIQADISGR 241
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L I+H W P+
Sbjct: 242 PKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLGIIHTRWKPM 292
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAHW YKE G
Sbjct: 293 PGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAHWAYKE-GKV 351
Query: 523 LQSISSMD 530
+ S +S D
Sbjct: 352 VNSKTSFD 359
>gi|312880418|ref|ZP_07740218.1| (p)ppGpp synthetase I, SpoT/RelA [Aminomonas paucivorans DSM 12260]
gi|310783709|gb|EFQ24107.1| (p)ppGpp synthetase I, SpoT/RelA [Aminomonas paucivorans DSM 12260]
Length = 760
Score = 176 bits (447), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 143/455 (31%), Positives = 218/455 (47%), Gaps = 101/455 (22%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A+ FA AH Q R +G+PY+ H I ILA + + V+T+ A +LHDV++D
Sbjct: 70 EALVFAAEAHREQKRHSGEPYVVHTISVASILADM-----ELDVETLSAALLHDVLEDTP 124
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELAD-RLHNMRTI 224
++E FG EV LV GV++L G L + + D + N+R +
Sbjct: 125 VGDAVLKERFGPEVLTLVDGVTKL-----------------GKLPFKSIEDYQAENLRKM 167
Query: 225 YALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
+ + +A++ ++ LA RL + L+A D A+ + + ++ A LA
Sbjct: 168 FLV-------MAKDIRVVLIKLADRLHNMRTLQAHRRDRQLAIAKETL--EIYAPLA--- 215
Query: 284 SPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRK 343
+R+G + + +D SF D + ++I RR
Sbjct: 216 ---HRLGIYQ------------VKRELEDLSFKILDPEIY-----------YEI--RRRV 247
Query: 344 RTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRL 403
R K +++A + Q I L++ LL G+E +L+ R
Sbjct: 248 RKKL---------PEREAIIKQALDI-----------LQQRLLEE-----GVEASLNGRP 282
Query: 404 KSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPID 463
K YSI+ KMRRK++ + ++YD ALRVVVG + CY +L +VH +W PI
Sbjct: 283 KHFYSIYEKMRRKNLSLDQLYDLLALRVVVG---------GLAECYQVLGLVHTIWKPIP 333
Query: 464 GEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG--- 520
G+FDDYI NPK + YQSLHT V GP G LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 334 GQFDDYIANPKSNMYQSLHTTVLGPSGEPLEVQIRTWEMHRLAEYGIAAHWHYKEGKQRV 393
Query: 521 NKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLF 555
N+L + +E+ S+ T+ + L TD+
Sbjct: 394 NQLDRRLTWIRQVLESQQDGSEPTEFLDNLKTDVL 428
>gi|422416024|ref|ZP_16492981.1| GTP diphosphokinase [Listeria innocua FSL J1-023]
gi|423100605|ref|ZP_17088312.1| GTP diphosphokinase [Listeria innocua ATCC 33091]
gi|313623673|gb|EFR93827.1| GTP diphosphokinase [Listeria innocua FSL J1-023]
gi|370792829|gb|EHN60672.1| GTP diphosphokinase [Listeria innocua ATCC 33091]
Length = 738
Score = 176 bits (447), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 136/428 (31%), Positives = 202/428 (47%), Gaps = 97/428 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA+ +H QFRK+G+PY+ H I IL L K TV +G LHDVV+D
Sbjct: 28 VKKAYEFARDSHKEQFRKSGEPYIIHPIQVAGILVEL-----KMDPSTVASGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L +EE FG+EVA LV GV++L I HEE + N R
Sbjct: 83 TPVTLADLEEVFGEEVAMLVDGVTKLGKIK--------------YKSHEE--QQAENHRK 126
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
++ A+AQ+ +I LA RL + L ++ Q R++ + ++
Sbjct: 127 MFI-------AMAQDIRVILIKLADRL------HNMRTLKHLPVEKQ--RRIANETLEIF 171
Query: 284 SP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
+P +R+G SR + + L R + + + H++ K R
Sbjct: 172 APLAHRLGISR-VKWELEDTAL--RYLNPQQYYRIV--HLMKQK--------------RD 212
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
R ++LHD V+ L L ++ +S R
Sbjct: 213 ARERYLHD------------VIDGVNENLDEL-------------------NIQADISGR 241
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L I+H W P+
Sbjct: 242 PKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLGIIHTRWKPM 292
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAHW YKE G
Sbjct: 293 PGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAHWAYKE-GKV 351
Query: 523 LQSISSMD 530
+ S +S D
Sbjct: 352 VNSKTSFD 359
>gi|356558920|ref|XP_003547750.1| PREDICTED: uncharacterized protein LOC100787301 [Glycine max]
Length = 715
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 152/427 (35%), Positives = 205/427 (48%), Gaps = 98/427 (22%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF +E V KA A++AH GQ R +GDPYL HC+ T +LA++ +S V AG
Sbjct: 205 HKIFCEEFVIKAFCEAEKAHRGQMRASGDPYLQHCLETAVLLALIGANS-----TVVAAG 259
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
+LHD +DDA + I FG VA LV GVS+LS++++L R + T A
Sbjct: 260 LLHDSLDDAFLTYDYIVGMFGAGVADLVEGVSKLSHLSKLAREN-------NTASKSVEA 312
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRK 274
DRLH M L A ARAV LI LA RL + L A V + Q F K
Sbjct: 313 DRLHTM----FLGMADARAV-----LI--KLADRLHNMMTLDA------LPVAKRQRFAK 355
Query: 275 MRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVV 333
+ +++P NR+G S + K+ LE +
Sbjct: 356 ---ETLEIFAPLANRLGIS-------------------------------TWKEQLENLC 381
Query: 334 PFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQ--DAGIALTSLVACEEALEKELLISTSY 391
F H L S + +K+V+ D + +++ EEAL+ E SY
Sbjct: 382 -------------FKH-LNPSHHEELSSKLVESYDDAMITSAIERLEEALKDE---GISY 424
Query: 392 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 451
+S R KSLYS++ KM +K + I ++D LR++V DK + CY
Sbjct: 425 -----NVISGRHKSLYSVYCKMLKKKLTIDDIHDIYGLRLIV-DKE--------EDCYKA 470
Query: 452 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 511
L +VHRLW + G+ DYI PK +GYQSLHT V G LEVQIRT+ MH AE G A
Sbjct: 471 LTVVHRLWSEVPGKLKDYICRPKFNGYQSLHTVVMGEGKVPLEVQIRTKDMHLQAEFGFA 530
Query: 512 AHWLYKE 518
AHW YKE
Sbjct: 531 AHWRYKE 537
>gi|238926103|ref|ZP_04657863.1| GTP diphosphokinase [Selenomonas flueggei ATCC 43531]
gi|238885993|gb|EEQ49631.1| GTP diphosphokinase [Selenomonas flueggei ATCC 43531]
Length = 739
Score = 176 bits (446), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 138/456 (30%), Positives = 205/456 (44%), Gaps = 105/456 (23%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P + ++ +A FA AH GQ R +G+PY+ H +H IL L +T+ A
Sbjct: 22 PNADINKIVRAYEFAANAHRGQERVSGEPYIVHPMHVAYILTTLHLDD-----ETICAAF 76
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELAD 216
LHDVV+D +L IE FG V L+ GV++L I ++ E++
Sbjct: 77 LHDVVEDTQTTLEEIEAVFGKNVMTLIDGVTKLGRIE--------------SMSKEDV-- 120
Query: 217 RLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKM 275
+L N R ++ A+A++ +I LA RL + LK ED + R
Sbjct: 121 KLENYRKMFL-------AMAKDIRVIMIKLADRLHNMRTLKYMRED--------KRQRIA 165
Query: 276 RADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPF 335
R L NR+G S L R + +T +E
Sbjct: 166 RETLEVYAPLANRLGIS---GIKAELEDLCLRYLEPEAYYTLVEE--------------- 207
Query: 336 DILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGM 395
+ RR+R +F+ D + AQ +A G+
Sbjct: 208 -VKQKRRERQEFIQDAVQKIRAQLEA-------------------------------AGI 235
Query: 396 EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIV 455
E + R K YSI+ KM+R + I+++YD A+RV+V ++ CY +L ++
Sbjct: 236 EAEIKGRAKHFYSIYRKMKRDNKSINEIYDLSAVRVLVS---------TVKDCYGVLGVI 286
Query: 456 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 515
H +W PI G F DYI PK +GYQSLHT V +G LE+QIRT+ MH+ +E G+AAHW
Sbjct: 287 HAMWKPIPGRFKDYIAMPKSNGYQSLHTTVM-TEGDPLEIQIRTKAMHQISEFGIAAHWK 345
Query: 516 YKETGNKLQSISSMDESDIEAS-----SSLSKDTDD 546
YKE G +S+ + DE+D + S SL K+ DD
Sbjct: 346 YKEAG---RSVGAGDENDQKMSWLRQMVSLQKEYDD 378
>gi|224070802|ref|XP_002303242.1| predicted protein [Populus trichocarpa]
gi|222840674|gb|EEE78221.1| predicted protein [Populus trichocarpa]
Length = 737
Score = 176 bits (446), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 149/433 (34%), Positives = 206/433 (47%), Gaps = 95/433 (21%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF D+ V KA A++AH GQ R +GDPYL HC+ T +LA++ +S V AG
Sbjct: 227 HKIFCDDFVIKAFYEAEKAHRGQMRASGDPYLEHCVETAVLLAIIGANSS-----VVAAG 281
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
+LHD +DD+ S I + FG VA LV GVS+LS +++L R + N T+ A
Sbjct: 282 LLHDSLDDSFLSYDYIFKTFGAGVADLVEGVSKLSQLSKLAREN---NTASKTVE----A 334
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRK 274
DRLH M L A ARAV LI LA RL + L A +++ Q F K
Sbjct: 335 DRLHTM----FLAMADARAV-----LI--KLADRLHNMITLDA------LPLVKQQRFAK 377
Query: 275 MRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVV 333
+ +++P NR+G S + K+ LE +
Sbjct: 378 ---ETMQIFAPLANRLGIS-------------------------------TWKEQLETLC 403
Query: 334 PFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIP 393
F H L A++V+ A+ + + +E L+K L
Sbjct: 404 -------------FKH-LNPDQHRHLSARLVESFDEAM--IASTKEKLDKALTDE----- 442
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
+ L R KSLYSI KM +K + + +++D LR++V +K CY L
Sbjct: 443 AISYNLHGRHKSLYSIHCKMSKKKLNMDQIHDIHGLRLIVENKED---------CYRALR 493
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW + G+F DYI NPK +GY+SLHT V G LEVQIRT++MH AE G AAH
Sbjct: 494 VVHCLWSEVPGQFKDYITNPKFNGYRSLHTVVMGEGTVPLEVQIRTKEMHLQAEFGFAAH 553
Query: 514 WLYKETGNKLQSI 526
W YKE K S
Sbjct: 554 WRYKEGDCKHSSF 566
>gi|407002062|gb|EKE18918.1| hypothetical protein ACD_9C00200G0011 [uncultured bacterium]
Length = 494
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 136/421 (32%), Positives = 209/421 (49%), Gaps = 96/421 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ +A FA++AH GQ R++G+ Y H T +ILA + GK T+ AG++HDV +D
Sbjct: 25 ISEAYEFAQQAHEGQKRRSGEEYFQHPAATAKILAQM-GMGGK----TIAAGLMHDVPED 79
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L IE++FG E+A LV GV++L I LR G+ HEE L N+R
Sbjct: 80 TEFTLEDIEKKFGKEIAHLVDGVTKLGRIK--LR---------GS--HEEYY--LENLRK 124
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
+ A+A + +I LA RL ++ L L P +++ + ++
Sbjct: 125 MLL-------AMASDIRVILIKLADRL------HNMQTLNH--LPPDKQQRIAQETMEIF 169
Query: 284 SP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
+P NR+G + +T D SF D+ S+ LE D +
Sbjct: 170 APIANRLGIG------------EIKTQLQDLSFRYLDKENYSLVKELEE-------KDYK 210
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS- 401
+R+++ VQ A + +E ++KE G+++ +
Sbjct: 211 ERSRY----------------VQQA------IDELKEEIKKE---------GIQIIQADG 239
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R KS+YS+F K+++ D+ I+++YD A+R++V P + CY L IVH+ + P
Sbjct: 240 RAKSIYSLFLKLQKHDMDINRIYDLAAVRIIV---------PEVADCYETLGIVHKKYRP 290
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ G DYI PKP+GYQS+HT V GPDG LEVQIRT KMH AE G+AAHW+Y E
Sbjct: 291 MIGRIKDYISLPKPNGYQSIHTTVFGPDGKILEVQIRTIKMHNEAEFGIAAHWIYTENKK 350
Query: 522 K 522
+
Sbjct: 351 R 351
>gi|315282436|ref|ZP_07870851.1| GTP diphosphokinase [Listeria marthii FSL S4-120]
gi|313613919|gb|EFR87648.1| GTP diphosphokinase [Listeria marthii FSL S4-120]
Length = 738
Score = 175 bits (444), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 136/428 (31%), Positives = 201/428 (46%), Gaps = 97/428 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA+ +H QFRK+G+PY+ H I IL L K TV +G LHDVV+D
Sbjct: 28 VKKAYEFARDSHKEQFRKSGEPYIIHPIQVAGILVEL-----KMDPSTVASGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L +EE FG EVA LV GV++L I HEE + N R
Sbjct: 83 TPVTLADLEEVFGSEVAMLVDGVTKLGKIK--------------YKSHEE--QQAENHRK 126
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
++ A+AQ+ +I LA RL + L ++ Q R++ + ++
Sbjct: 127 MFI-------AMAQDIRVILIKLADRL------HNMRTLKHLPVEKQ--RRIANETLEIF 171
Query: 284 SP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
+P +R+G SR + + L R + + + H++ K R
Sbjct: 172 APLAHRLGISR-VKWELEDTAL--RYLNPQQYYRIV--HLMKQK--------------RD 212
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
R ++LHD V+ L L ++ +S R
Sbjct: 213 ARERYLHD------------VIDGVNENLDEL-------------------NIQADISGR 241
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L I+H W P+
Sbjct: 242 PKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLGIIHTRWKPM 292
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAHW YKE G
Sbjct: 293 PGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAHWAYKE-GKV 351
Query: 523 LQSISSMD 530
+ S +S D
Sbjct: 352 VNSKTSFD 359
>gi|16803563|ref|NP_465048.1| hypothetical protein lmo1523 [Listeria monocytogenes EGD-e]
gi|47097020|ref|ZP_00234593.1| GTP pyrophosphokinase [Listeria monocytogenes str. 1/2a F6854]
gi|254828243|ref|ZP_05232930.1| relA [Listeria monocytogenes FSL N3-165]
gi|254912197|ref|ZP_05262209.1| GTP pyrophosphokinase [Listeria monocytogenes J2818]
gi|254936525|ref|ZP_05268222.1| relA [Listeria monocytogenes F6900]
gi|284801913|ref|YP_003413778.1| hypothetical protein LM5578_1668 [Listeria monocytogenes 08-5578]
gi|284995055|ref|YP_003416823.1| hypothetical protein LM5923_1620 [Listeria monocytogenes 08-5923]
gi|386043834|ref|YP_005962639.1| GTP pyrophosphokinase [Listeria monocytogenes 10403S]
gi|386047175|ref|YP_005965507.1| relA [Listeria monocytogenes J0161]
gi|386050499|ref|YP_005968490.1| GTP pyrophosphokinase [Listeria monocytogenes FSL R2-561]
gi|386053776|ref|YP_005971334.1| GTP pyrophosphokinase [Listeria monocytogenes Finland 1998]
gi|404284015|ref|YP_006684912.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2372]
gi|404410825|ref|YP_006696413.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC5850]
gi|405758571|ref|YP_006687847.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2479]
gi|16410952|emb|CAC99601.1| relA [Listeria monocytogenes EGD-e]
gi|47014602|gb|EAL05562.1| GTP pyrophosphokinase [Listeria monocytogenes str. 1/2a F6854]
gi|258600631|gb|EEW13956.1| relA [Listeria monocytogenes FSL N3-165]
gi|258609119|gb|EEW21727.1| relA [Listeria monocytogenes F6900]
gi|284057475|gb|ADB68416.1| hypothetical protein LM5578_1668 [Listeria monocytogenes 08-5578]
gi|284060522|gb|ADB71461.1| hypothetical protein LM5923_1620 [Listeria monocytogenes 08-5923]
gi|293590170|gb|EFF98504.1| GTP pyrophosphokinase [Listeria monocytogenes J2818]
gi|345534166|gb|AEO03607.1| relA [Listeria monocytogenes J0161]
gi|345537068|gb|AEO06508.1| GTP pyrophosphokinase [Listeria monocytogenes 10403S]
gi|346424345|gb|AEO25870.1| GTP pyrophosphokinase [Listeria monocytogenes FSL R2-561]
gi|346646427|gb|AEO39052.1| GTP pyrophosphokinase [Listeria monocytogenes Finland 1998]
gi|404230651|emb|CBY52055.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC5850]
gi|404233517|emb|CBY54920.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2372]
gi|404236453|emb|CBY57855.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2479]
gi|441471216|emb|CCQ20971.1| GTP pyrophosphokinase [Listeria monocytogenes]
gi|441474345|emb|CCQ24099.1| GTP pyrophosphokinase [Listeria monocytogenes N53-1]
Length = 738
Score = 175 bits (444), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 136/428 (31%), Positives = 201/428 (46%), Gaps = 97/428 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA+ +H QFRK+G+PY+ H I IL L K TV +G LHDVV+D
Sbjct: 28 VKKAYEFARDSHKEQFRKSGEPYIIHPIQVAGILVEL-----KMDPSTVASGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L +EE FG EVA LV GV++L I HEE + N R
Sbjct: 83 TPVTLADLEEVFGSEVAMLVDGVTKLGKIK--------------YKSHEE--QQAENHRK 126
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
++ A+AQ+ +I LA RL + L ++ Q R++ + ++
Sbjct: 127 MFI-------AMAQDIRVILIKLADRL------HNMRTLKHLPVEKQ--RRIANETLEIF 171
Query: 284 SP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
+P +R+G SR + + L R + + + H++ K R
Sbjct: 172 APLAHRLGISR-VKWELEDTAL--RYLNPQQYYRIV--HLMKQK--------------RD 212
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
R ++LHD V+ L L ++ +S R
Sbjct: 213 ARERYLHD------------VIDGVNENLDEL-------------------NIQADISGR 241
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L I+H W P+
Sbjct: 242 PKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLGIIHTRWKPM 292
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAHW YKE G
Sbjct: 293 PGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAHWAYKE-GKV 351
Query: 523 LQSISSMD 530
+ S +S D
Sbjct: 352 VNSKTSFD 359
>gi|401564457|ref|ZP_10805350.1| GTP diphosphokinase [Selenomonas sp. FOBRC6]
gi|400188859|gb|EJO22995.1| GTP diphosphokinase [Selenomonas sp. FOBRC6]
Length = 743
Score = 175 bits (444), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 136/451 (30%), Positives = 215/451 (47%), Gaps = 105/451 (23%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
++++KA A+A++AH GQ R +GD Y+ H ++ IL L +T+ A +LHDVV
Sbjct: 28 DKIRKAYAYAEQAHSGQVRISGDAYIIHPLNVAYILTGLHLDD-----ETICAALLHDVV 82
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNM 221
+D C +L +E EFG + L+ GV++L I + + E++ +L N
Sbjct: 83 EDTCATLEEMEAEFGKNIMALIDGVTKLGRIEYMSK--------------EDV--QLENY 126
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLA 280
R ++ A+A++ +I LA RL + LK ED + + + ++ A LA
Sbjct: 127 RKMFL-------AMAKDIRVIMIKLADRLHNMRTLKYMREDKRHRIAKETL--EVYAPLA 177
Query: 281 SMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSD 340
NR+G S V L R + +T +E +
Sbjct: 178 ------NRLGIS---NIKVELEDLCLRYLEPEAYYTLVEE----------------VKHK 212
Query: 341 RRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLS 400
R++R +F+ + S+ E LE G++ +
Sbjct: 213 RKERQEFIRE----------------------SIEQIREKLEA---------AGIKAEIK 241
Query: 401 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 460
R K YSI+ KM+R + ++++YD A+RV+V +++ CY +L ++H +W
Sbjct: 242 GRAKHFYSIYRKMKRDNKSVNEIYDLSAVRVLVS---------SVKDCYGVLGVIHAMWK 292
Query: 461 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 520
PI G F DYI PK +GYQSLHT V G LE+QIRT+ MH+ +E G+AAHW YKE G
Sbjct: 293 PIPGRFKDYIAMPKSNGYQSLHTTVM-THGYPLEIQIRTKAMHQVSEFGVAAHWKYKEAG 351
Query: 521 NKLQSISSMDESDIEAS-----SSLSKDTDD 546
+SI + DE+D + S SL K+ DD
Sbjct: 352 ---RSIGATDETDQKMSWLRQMVSLQKEYDD 379
>gi|314938569|ref|ZP_07845853.1| GTP diphosphokinase [Enterococcus faecium TX0133a04]
gi|314952050|ref|ZP_07855073.1| GTP diphosphokinase [Enterococcus faecium TX0133A]
gi|314995190|ref|ZP_07860304.1| GTP diphosphokinase [Enterococcus faecium TX0133a01]
gi|313590599|gb|EFR69444.1| GTP diphosphokinase [Enterococcus faecium TX0133a01]
gi|313595840|gb|EFR74685.1| GTP diphosphokinase [Enterococcus faecium TX0133A]
gi|313642126|gb|EFS06706.1| GTP diphosphokinase [Enterococcus faecium TX0133a04]
Length = 737
Score = 175 bits (444), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 138/421 (32%), Positives = 199/421 (47%), Gaps = 98/421 (23%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA +A AH GQFRK+G+PY+ H I ILA L K TV G LHDVV+D
Sbjct: 28 VEKACEYATAAHDGQFRKSGEPYIIHPIQVAGILADL-----KMDPHTVATGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L + EEFGD+VA LV GV++L I + H E+LA+ M
Sbjct: 83 TEITLEDLREEFGDDVAMLVDGVTKLGKIK--YKSHE-----------EQLAENHRKMLL 129
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
A+AQ+ +I LA RL + LK ED R++ + +
Sbjct: 130 ----------AMAQDLRVIMVKLADRLHNMRTLKHLREDKQ---------RRIAQETLEI 170
Query: 283 WSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
++P +R+G SR I + L R + + + H++ K R
Sbjct: 171 YAPLAHRLGISR-IKWELEDTAL--RYLNPKQYYRIV--HLMQTK--------------R 211
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
+R K++ + V+D IA L G+ +
Sbjct: 212 EEREKYV------------SGTVEDIRIATEEL-------------------GIFAEIYG 240
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L +H W P
Sbjct: 241 RPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLGAIHTKWKP 291
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ G F DYI PK + YQSLHT V GP G+ +E+QIRTQ+MHE AE G+AAHW YKE N
Sbjct: 292 MPGRFKDYIAMPKANMYQSLHTTVIGPAGNPVEIQIRTQEMHEIAEFGVAAHWAYKEGKN 351
Query: 522 K 522
+
Sbjct: 352 E 352
>gi|46907751|ref|YP_014140.1| GTP pyrophosphokinase [Listeria monocytogenes serotype 4b str.
F2365]
gi|226224124|ref|YP_002758231.1| (p)ppGpp synthetase [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|254824418|ref|ZP_05229419.1| GTP pyrophosphokinase [Listeria monocytogenes FSL J1-194]
gi|254852146|ref|ZP_05241494.1| GTP pyrophosphokinase [Listeria monocytogenes FSL R2-503]
gi|254931458|ref|ZP_05264817.1| GTP pyrophosphokinase [Listeria monocytogenes HPB2262]
gi|300764810|ref|ZP_07074800.1| GTP pyrophosphokinase [Listeria monocytogenes FSL N1-017]
gi|386732261|ref|YP_006205757.1| (p)ppGpp synthetase [Listeria monocytogenes 07PF0776]
gi|404281082|ref|YP_006681980.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2755]
gi|404286945|ref|YP_006693531.1| GTP pyrophosphokinase [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|405749867|ref|YP_006673333.1| GTP pyrophosphokinase [Listeria monocytogenes ATCC 19117]
gi|405752743|ref|YP_006676208.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2378]
gi|405755681|ref|YP_006679145.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2540]
gi|406704296|ref|YP_006754650.1| GTP pyrophosphokinase [Listeria monocytogenes L312]
gi|417316063|ref|ZP_12102721.1| (p)ppGpp synthetase [Listeria monocytogenes J1816]
gi|424714398|ref|YP_007015113.1| GTP pyrophosphokinase [Listeria monocytogenes serotype 4b str.
LL195]
gi|424823285|ref|ZP_18248298.1| GTP pyrophosphokinase [Listeria monocytogenes str. Scott A]
gi|46881020|gb|AAT04317.1| GTP pyrophosphokinase [Listeria monocytogenes serotype 4b str.
F2365]
gi|225876586|emb|CAS05295.1| Putative (p)ppGpp synthetase [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|258605450|gb|EEW18058.1| GTP pyrophosphokinase [Listeria monocytogenes FSL R2-503]
gi|293583010|gb|EFF95042.1| GTP pyrophosphokinase [Listeria monocytogenes HPB2262]
gi|293593653|gb|EFG01414.1| GTP pyrophosphokinase [Listeria monocytogenes FSL J1-194]
gi|300514486|gb|EFK41543.1| GTP pyrophosphokinase [Listeria monocytogenes FSL N1-017]
gi|328465560|gb|EGF36789.1| (p)ppGpp synthetase [Listeria monocytogenes J1816]
gi|332311965|gb|EGJ25060.1| GTP pyrophosphokinase [Listeria monocytogenes str. Scott A]
gi|384391019|gb|AFH80089.1| (p)ppGpp synthetase [Listeria monocytogenes 07PF0776]
gi|404219067|emb|CBY70431.1| GTP pyrophosphokinase [Listeria monocytogenes ATCC 19117]
gi|404221943|emb|CBY73306.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2378]
gi|404224881|emb|CBY76243.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2540]
gi|404227717|emb|CBY49122.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2755]
gi|404245874|emb|CBY04099.1| GTP pyrophosphokinase [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|406361326|emb|CBY67599.1| GTP pyrophosphokinase [Listeria monocytogenes L312]
gi|424013582|emb|CCO64122.1| GTP pyrophosphokinase [Listeria monocytogenes serotype 4b str.
LL195]
Length = 738
Score = 175 bits (444), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 136/428 (31%), Positives = 201/428 (46%), Gaps = 97/428 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA+ +H QFRK+G+PY+ H I IL L K TV +G LHDVV+D
Sbjct: 28 VKKAYEFARDSHKEQFRKSGEPYIIHPIQVAGILVEL-----KMDPSTVASGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L +EE FG EVA LV GV++L I HEE + N R
Sbjct: 83 TPVTLADLEEVFGSEVAMLVDGVTKLGKIK--------------YKSHEE--QQAENHRK 126
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
++ A+AQ+ +I LA RL + L ++ Q R++ + ++
Sbjct: 127 MFI-------AMAQDIRVILIKLADRL------HNMRTLKHLPVEKQ--RRIANETLEIF 171
Query: 284 SP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
+P +R+G SR + + L R + + + H++ K R
Sbjct: 172 APLAHRLGISR-VKWELEDTAL--RYLNPQQYYRIV--HLMKQK--------------RD 212
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
R ++LHD V+ L L ++ +S R
Sbjct: 213 ARERYLHD------------VIDGVNENLDEL-------------------NIQADISGR 241
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L I+H W P+
Sbjct: 242 PKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLGIIHTRWKPM 292
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAHW YKE G
Sbjct: 293 PGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAHWAYKE-GKV 351
Query: 523 LQSISSMD 530
+ S +S D
Sbjct: 352 VNSKTSFD 359
>gi|254994034|ref|ZP_05276224.1| (p)ppGpp synthetase [Listeria monocytogenes FSL J2-064]
Length = 711
Score = 175 bits (444), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 136/428 (31%), Positives = 201/428 (46%), Gaps = 97/428 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA+ +H QFRK+G+PY+ H I IL L K TV +G LHDVV+D
Sbjct: 28 VKKAYEFARDSHKEQFRKSGEPYIIHPIQVAGILVEL-----KMDPSTVASGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L +EE FG EVA LV GV++L I HEE + N R
Sbjct: 83 TPVTLADLEEVFGSEVAMLVDGVTKLGKIK--------------YKSHEE--QQAENHRK 126
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
++ A+AQ+ +I LA RL + L ++ Q R++ + ++
Sbjct: 127 MFI-------AMAQDIRVILIKLADRL------HNMRTLKHLPVEKQ--RRIANETLEIF 171
Query: 284 SP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
+P +R+G SR + + L R + + + H++ K R
Sbjct: 172 APLAHRLGISR-VKWELEDTAL--RYLNPQQYYRIV--HLMKQK--------------RD 212
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
R ++LHD V+ L L ++ +S R
Sbjct: 213 ARERYLHD------------VIDGVNENLDEL-------------------NIQADISGR 241
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L I+H W P+
Sbjct: 242 PKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLGIIHTRWKPM 292
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAHW YKE G
Sbjct: 293 PGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAHWAYKE-GKV 351
Query: 523 LQSISSMD 530
+ S +S D
Sbjct: 352 VNSKTSFD 359
>gi|429735228|ref|ZP_19269197.1| GTP diphosphokinase [Selenomonas sp. oral taxon 138 str. F0429]
gi|429159340|gb|EKY01855.1| GTP diphosphokinase [Selenomonas sp. oral taxon 138 str. F0429]
Length = 743
Score = 175 bits (444), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 134/452 (29%), Positives = 215/452 (47%), Gaps = 107/452 (23%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
++++KA A+A++AH GQ R +GD Y+ H ++ IL L +T+ A +LHDVV
Sbjct: 28 DKIRKAYAYAEQAHSGQVRISGDAYIIHPLNVAYILTGLHLDD-----ETICAALLHDVV 82
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNM 221
+D C +L +E EFG + L+ GV++L I + + E++ +L N
Sbjct: 83 EDTCATLEEMEAEFGKNIMALIDGVTKLGRIEYMSK--------------EDV--QLENY 126
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLA 280
R ++ A+A++ +I LA RL + LK ED +++ +
Sbjct: 127 RKMFL-------AMAKDIRVIMIKLADRLHNMRTLKYMREDK---------RQRIAKETL 170
Query: 281 SMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILS 339
+++P NR+G S V L R + +T +E +
Sbjct: 171 EVYAPLANRLGIS---NIKVELEDLCLRYLEPEAYYTLVEE----------------VKH 211
Query: 340 DRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTL 399
R++R +F+ + S+ E LE G++ +
Sbjct: 212 KRKERQEFIRE----------------------SIEQIREKLEA---------AGIKAEI 240
Query: 400 SSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLW 459
R K YSI+ KM+R + ++++YD A+RV+V +++ CY +L ++H +W
Sbjct: 241 KGRAKHFYSIYRKMKRDNKSVNEIYDLSAVRVLVS---------SVKDCYGVLGVIHAMW 291
Query: 460 IPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET 519
PI G F DYI PK +GYQSLHT V G LE+QIRT+ MH+ +E G+AAHW YKE
Sbjct: 292 KPIPGRFKDYIAMPKSNGYQSLHTTVM-THGYPLEIQIRTKAMHQVSEFGVAAHWKYKEA 350
Query: 520 GNKLQSISSMDESDIEAS-----SSLSKDTDD 546
G +SI + DE+D + S SL K+ DD
Sbjct: 351 G---RSIGATDENDQKMSWLRQMVSLQKEYDD 379
>gi|217964330|ref|YP_002350008.1| GTP pyrophosphokinase [Listeria monocytogenes HCC23]
gi|290893882|ref|ZP_06556860.1| GTP pyrophosphokinase [Listeria monocytogenes FSL J2-071]
gi|386008294|ref|YP_005926572.1| GTP pyrophosphokinase [Listeria monocytogenes L99]
gi|386026896|ref|YP_005947672.1| putative (p)ppGpp synthetase [Listeria monocytogenes M7]
gi|404407961|ref|YP_006690676.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2376]
gi|217333600|gb|ACK39394.1| GTP pyrophosphokinase (ATP:GTP 3-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase) [Listeria
monocytogenes HCC23]
gi|290556599|gb|EFD90135.1| GTP pyrophosphokinase [Listeria monocytogenes FSL J2-071]
gi|307571104|emb|CAR84283.1| GTP pyrophosphokinase [Listeria monocytogenes L99]
gi|336023477|gb|AEH92614.1| putative (p)ppGpp synthetase [Listeria monocytogenes M7]
gi|404242110|emb|CBY63510.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2376]
Length = 738
Score = 175 bits (444), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 136/428 (31%), Positives = 201/428 (46%), Gaps = 97/428 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA+ +H QFRK+G+PY+ H I IL L K TV +G LHDVV+D
Sbjct: 28 VKKAYEFARDSHKEQFRKSGEPYIIHPIQVAGILVEL-----KMDPSTVASGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L +EE FG EVA LV GV++L I HEE + N R
Sbjct: 83 TPVTLADLEEVFGSEVAMLVDGVTKLGKIK--------------YKSHEE--QQAENHRK 126
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
++ A+AQ+ +I LA RL + L ++ Q R++ + ++
Sbjct: 127 MFI-------AMAQDIRVILIKLADRL------HNMRTLKHLPVEKQ--RRIANETLEIF 171
Query: 284 SP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
+P +R+G SR + + L R + + + H++ K R
Sbjct: 172 APLAHRLGISR-VKWELEDTAL--RYLNPQQYYRIV--HLMKQK--------------RD 212
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
R ++LHD V+ L L ++ +S R
Sbjct: 213 ARERYLHD------------VIDGVNENLDEL-------------------NIQADISGR 241
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L I+H W P+
Sbjct: 242 PKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLGIIHTRWKPM 292
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAHW YKE G
Sbjct: 293 PGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAHWAYKE-GKV 351
Query: 523 LQSISSMD 530
+ S +S D
Sbjct: 352 VNSKTSFD 359
>gi|430834057|ref|ZP_19452067.1| RelA/SpoT family protein [Enterococcus faecium E0679]
gi|430485957|gb|ELA62838.1| RelA/SpoT family protein [Enterococcus faecium E0679]
Length = 786
Score = 175 bits (444), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 138/421 (32%), Positives = 199/421 (47%), Gaps = 98/421 (23%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA +A AH GQFRK+G+PY+ H I ILA L K TV G LHDVV+D
Sbjct: 77 VEKACEYATAAHDGQFRKSGEPYIIHPIQVAGILADL-----KMDPHTVATGFLHDVVED 131
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L + EEFGD+VA LV GV++L I + H E+LA+ M
Sbjct: 132 TEITLEDLREEFGDDVAMLVDGVTKLGKIK--YKSH-----------EEQLAENHRKMLL 178
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
A+AQ+ +I LA RL + LK ED R++ + +
Sbjct: 179 ----------AMAQDLRVIMVKLADRLHNMRTLKHLREDKQ---------RRIAQETLEI 219
Query: 283 WSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
++P +R+G SR I + L R + + + H++ K R
Sbjct: 220 YAPLAHRLGISR-IKWELEDTAL--RYLNPKQYYRIV--HLMQTK--------------R 260
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
+R K++ + V+D IA L G+ +
Sbjct: 261 EEREKYV------------SGTVEDIRIATEEL-------------------GIFAEIYG 289
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L +H W P
Sbjct: 290 RPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLGAIHTKWKP 340
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ G F DYI PK + YQSLHT V GP G+ +E+QIRTQ+MHE AE G+AAHW YKE N
Sbjct: 341 MPGRFKDYIAMPKANMYQSLHTTVIGPAGNPVEIQIRTQEMHEIAEFGVAAHWAYKEGKN 400
Query: 522 K 522
+
Sbjct: 401 E 401
>gi|422809604|ref|ZP_16858015.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Listeria
monocytogenes FSL J1-208]
gi|378753218|gb|EHY63803.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Listeria
monocytogenes FSL J1-208]
Length = 738
Score = 175 bits (444), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 136/428 (31%), Positives = 201/428 (46%), Gaps = 97/428 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA+ +H QFRK+G+PY+ H I IL L K TV +G LHDVV+D
Sbjct: 28 VKKAYEFARDSHKEQFRKSGEPYIIHPIQVAGILVEL-----KMDPSTVASGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L +EE FG EVA LV GV++L I HEE + N R
Sbjct: 83 TPVTLADLEEVFGSEVAMLVDGVTKLGKIK--------------YKSHEE--QQAENHRK 126
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
++ A+AQ+ +I LA RL + L ++ Q R++ + ++
Sbjct: 127 MFI-------AMAQDIRVILIKLADRL------HNMRTLKHLPVEKQ--RRIANETLEIF 171
Query: 284 SP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
+P +R+G SR + + L R + + + H++ K R
Sbjct: 172 APLAHRLGISR-VKWELEDTAL--RYLNPQQYYRIV--HLMKQK--------------RD 212
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
R ++LHD V+ L L ++ +S R
Sbjct: 213 ARERYLHD------------VIDGVNENLDEL-------------------NIQADISGR 241
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L I+H W P+
Sbjct: 242 PKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLGIIHTRWKPM 292
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAHW YKE G
Sbjct: 293 PGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAHWAYKE-GKV 351
Query: 523 LQSISSMD 530
+ S +S D
Sbjct: 352 VNSKTSFD 359
>gi|69247932|ref|ZP_00604548.1| RelA/SpoT protein [Enterococcus faecium DO]
gi|257880296|ref|ZP_05659949.1| RelA/SpoT protein [Enterococcus faecium 1,230,933]
gi|257882151|ref|ZP_05661804.1| RelA/SpoT protein [Enterococcus faecium 1,231,502]
gi|257885343|ref|ZP_05664996.1| RelA/SpoT protein [Enterococcus faecium 1,231,501]
gi|257890955|ref|ZP_05670608.1| RelA/SpoT protein [Enterococcus faecium 1,231,410]
gi|257894210|ref|ZP_05673863.1| RelA/SpoT protein [Enterococcus faecium 1,231,408]
gi|260562400|ref|ZP_05832914.1| RelA/SpoT protein [Enterococcus faecium C68]
gi|261209225|ref|ZP_05923617.1| RelA/SpoT protein [Enterococcus faecium TC 6]
gi|289566141|ref|ZP_06446576.1| GTP pyrophosphokinase [Enterococcus faecium D344SRF]
gi|293556306|ref|ZP_06674891.1| GTP pyrophosphokinase [Enterococcus faecium E1039]
gi|293560712|ref|ZP_06677191.1| GTP pyrophosphokinase [Enterococcus faecium E1162]
gi|293566146|ref|ZP_06678549.1| GTP pyrophosphokinase [Enterococcus faecium E1071]
gi|294614195|ref|ZP_06694115.1| GTP pyrophosphokinase [Enterococcus faecium E1636]
gi|294622232|ref|ZP_06701292.1| GTP pyrophosphokinase [Enterococcus faecium U0317]
gi|314940914|ref|ZP_07847820.1| GTP diphosphokinase [Enterococcus faecium TX0133C]
gi|314948065|ref|ZP_07851467.1| GTP diphosphokinase [Enterococcus faecium TX0082]
gi|383329817|ref|YP_005355701.1| GTP diphosphokinase [Enterococcus faecium Aus0004]
gi|389869622|ref|YP_006377045.1| GTP diphosphokinase [Enterococcus faecium DO]
gi|406579528|ref|ZP_11054758.1| GTP diphosphokinase [Enterococcus sp. GMD4E]
gi|406581760|ref|ZP_11056896.1| GTP diphosphokinase [Enterococcus sp. GMD3E]
gi|406583837|ref|ZP_11058876.1| GTP diphosphokinase [Enterococcus sp. GMD2E]
gi|406590128|ref|ZP_11064525.1| GTP diphosphokinase [Enterococcus sp. GMD1E]
gi|410936653|ref|ZP_11368517.1| GTP diphosphokinase [Enterococcus sp. GMD5E]
gi|415888277|ref|ZP_11549092.1| GTP pyrophosphokinase [Enterococcus faecium E4453]
gi|416130760|ref|ZP_11597546.1| GTP pyrophosphokinase [Enterococcus faecium E4452]
gi|424779554|ref|ZP_18206474.1| GTP diphosphokinase [Enterococcus faecium V689]
gi|424795887|ref|ZP_18221693.1| GTP diphosphokinase [Enterococcus faecium S447]
gi|424819810|ref|ZP_18244850.1| GTP diphosphokinase [Enterococcus faecium R501]
gi|424853535|ref|ZP_18277909.1| GTP diphosphokinase [Enterococcus faecium R499]
gi|424869894|ref|ZP_18293570.1| GTP diphosphokinase [Enterococcus faecium R497]
gi|424938634|ref|ZP_18354408.1| GTP diphosphokinase [Enterococcus faecium R496]
gi|424952976|ref|ZP_18367967.1| GTP diphosphokinase [Enterococcus faecium R494]
gi|424956106|ref|ZP_18370901.1| GTP diphosphokinase [Enterococcus faecium R446]
gi|424959724|ref|ZP_18374290.1| GTP diphosphokinase [Enterococcus faecium P1986]
gi|424963000|ref|ZP_18377271.1| GTP diphosphokinase [Enterococcus faecium P1190]
gi|424966612|ref|ZP_18380376.1| GTP diphosphokinase [Enterococcus faecium P1140]
gi|424969680|ref|ZP_18383237.1| GTP diphosphokinase [Enterococcus faecium P1139]
gi|424974168|ref|ZP_18387418.1| GTP diphosphokinase [Enterococcus faecium P1137]
gi|424976523|ref|ZP_18389606.1| GTP diphosphokinase [Enterococcus faecium P1123]
gi|424979818|ref|ZP_18392650.1| GTP diphosphokinase [Enterococcus faecium ERV99]
gi|424983299|ref|ZP_18395893.1| GTP diphosphokinase [Enterococcus faecium ERV69]
gi|424986419|ref|ZP_18398840.1| GTP diphosphokinase [Enterococcus faecium ERV38]
gi|424989780|ref|ZP_18402034.1| GTP diphosphokinase [Enterococcus faecium ERV26]
gi|424993982|ref|ZP_18405949.1| GTP diphosphokinase [Enterococcus faecium ERV168]
gi|424996634|ref|ZP_18408432.1| GTP diphosphokinase [Enterococcus faecium ERV165]
gi|425000745|ref|ZP_18412295.1| GTP diphosphokinase [Enterococcus faecium ERV161]
gi|425003498|ref|ZP_18414862.1| GTP diphosphokinase [Enterococcus faecium ERV102]
gi|425007259|ref|ZP_18418397.1| GTP diphosphokinase [Enterococcus faecium ERV1]
gi|425010106|ref|ZP_18421078.1| GTP diphosphokinase [Enterococcus faecium E422]
gi|425013069|ref|ZP_18423816.1| GTP diphosphokinase [Enterococcus faecium E417]
gi|425017455|ref|ZP_18427958.1| GTP diphosphokinase [Enterococcus faecium C621]
gi|425020272|ref|ZP_18430589.1| GTP diphosphokinase [Enterococcus faecium C497]
gi|425022625|ref|ZP_18432796.1| GTP diphosphokinase [Enterococcus faecium C1904]
gi|425031926|ref|ZP_18437021.1| GTP diphosphokinase [Enterococcus faecium 515]
gi|425034244|ref|ZP_18439149.1| GTP diphosphokinase [Enterococcus faecium 514]
gi|425037683|ref|ZP_18442334.1| GTP diphosphokinase [Enterococcus faecium 513]
gi|425040580|ref|ZP_18445039.1| GTP diphosphokinase [Enterococcus faecium 511]
gi|425047514|ref|ZP_18451464.1| GTP diphosphokinase [Enterococcus faecium 509]
gi|425051955|ref|ZP_18455592.1| GTP diphosphokinase [Enterococcus faecium 506]
gi|425057217|ref|ZP_18460644.1| GTP diphosphokinase [Enterococcus faecium 504]
gi|425061739|ref|ZP_18464946.1| GTP diphosphokinase [Enterococcus faecium 503]
gi|427395763|ref|ZP_18888685.1| RelA/SpoT family protein [Enterococcus durans FB129-CNAB-4]
gi|430820722|ref|ZP_19439345.1| RelA/SpoT family protein [Enterococcus faecium E0045]
gi|430823660|ref|ZP_19442229.1| RelA/SpoT family protein [Enterococcus faecium E0120]
gi|430826557|ref|ZP_19444737.1| RelA/SpoT family protein [Enterococcus faecium E0164]
gi|430829158|ref|ZP_19447255.1| RelA/SpoT family protein [Enterococcus faecium E0269]
gi|430832404|ref|ZP_19450450.1| RelA/SpoT family protein [Enterococcus faecium E0333]
gi|430836653|ref|ZP_19454630.1| RelA/SpoT family protein [Enterococcus faecium E0680]
gi|430839686|ref|ZP_19457624.1| RelA/SpoT family protein [Enterococcus faecium E0688]
gi|430845201|ref|ZP_19463097.1| RelA/SpoT family protein [Enterococcus faecium E1050]
gi|430845719|ref|ZP_19463596.1| RelA/SpoT family protein [Enterococcus faecium E1133]
gi|430850320|ref|ZP_19468082.1| RelA/SpoT family protein [Enterococcus faecium E1185]
gi|430853864|ref|ZP_19471590.1| RelA/SpoT family protein [Enterococcus faecium E1258]
gi|430856707|ref|ZP_19474392.1| RelA/SpoT family protein [Enterococcus faecium E1392]
gi|430859526|ref|ZP_19477137.1| RelA/SpoT family protein [Enterococcus faecium E1552]
gi|430860918|ref|ZP_19478513.1| RelA/SpoT family protein [Enterococcus faecium E1573]
gi|430866741|ref|ZP_19481967.1| RelA/SpoT family protein [Enterococcus faecium E1574]
gi|430902730|ref|ZP_19484857.1| RelA/SpoT family protein [Enterococcus faecium E1575]
gi|430960575|ref|ZP_19487111.1| RelA/SpoT family protein [Enterococcus faecium E1576]
gi|431012401|ref|ZP_19490192.1| RelA/SpoT family protein [Enterococcus faecium E1578]
gi|431217876|ref|ZP_19501297.1| RelA/SpoT family protein [Enterococcus faecium E1620]
gi|431238716|ref|ZP_19503585.1| RelA/SpoT family protein [Enterococcus faecium E1622]
gi|431260184|ref|ZP_19505690.1| RelA/SpoT family protein [Enterococcus faecium E1623]
gi|431305128|ref|ZP_19508495.1| RelA/SpoT family protein [Enterococcus faecium E1626]
gi|431468375|ref|ZP_19514404.1| RelA/SpoT family protein [Enterococcus faecium E1630]
gi|431520320|ref|ZP_19516603.1| RelA/SpoT family protein [Enterococcus faecium E1634]
gi|431548672|ref|ZP_19519144.1| RelA/SpoT family protein [Enterococcus faecium E1731]
gi|431744430|ref|ZP_19533298.1| RelA/SpoT family protein [Enterococcus faecium E2071]
gi|431745118|ref|ZP_19533972.1| RelA/SpoT family protein [Enterococcus faecium E2134]
gi|431749532|ref|ZP_19538271.1| RelA/SpoT family protein [Enterococcus faecium E2297]
gi|431755466|ref|ZP_19544115.1| RelA/SpoT family protein [Enterococcus faecium E2883]
gi|431760950|ref|ZP_19549541.1| RelA/SpoT family protein [Enterococcus faecium E3346]
gi|431765578|ref|ZP_19554088.1| RelA/SpoT family protein [Enterococcus faecium E4215]
gi|431768374|ref|ZP_19556813.1| RelA/SpoT family protein [Enterococcus faecium E1321]
gi|431771621|ref|ZP_19560002.1| RelA/SpoT family protein [Enterococcus faecium E1644]
gi|431773741|ref|ZP_19562058.1| RelA/SpoT family protein [Enterococcus faecium E2369]
gi|431777486|ref|ZP_19565740.1| RelA/SpoT family protein [Enterococcus faecium E2560]
gi|431779833|ref|ZP_19568023.1| RelA/SpoT family protein [Enterococcus faecium E4389]
gi|431783794|ref|ZP_19571884.1| RelA/SpoT family protein [Enterococcus faecium E6012]
gi|431786298|ref|ZP_19574312.1| RelA/SpoT family protein [Enterococcus faecium E6045]
gi|68194634|gb|EAN09121.1| RelA/SpoT protein [Enterococcus faecium DO]
gi|257814524|gb|EEV43282.1| RelA/SpoT protein [Enterococcus faecium 1,230,933]
gi|257817809|gb|EEV45137.1| RelA/SpoT protein [Enterococcus faecium 1,231,502]
gi|257821199|gb|EEV48329.1| RelA/SpoT protein [Enterococcus faecium 1,231,501]
gi|257827315|gb|EEV53941.1| RelA/SpoT protein [Enterococcus faecium 1,231,410]
gi|257830589|gb|EEV57196.1| RelA/SpoT protein [Enterococcus faecium 1,231,408]
gi|260073324|gb|EEW61665.1| RelA/SpoT protein [Enterococcus faecium C68]
gi|260076771|gb|EEW64506.1| RelA/SpoT protein [Enterococcus faecium TC 6]
gi|289162086|gb|EFD09951.1| GTP pyrophosphokinase [Enterococcus faecium D344SRF]
gi|291590072|gb|EFF21864.1| GTP pyrophosphokinase [Enterococcus faecium E1071]
gi|291592971|gb|EFF24560.1| GTP pyrophosphokinase [Enterococcus faecium E1636]
gi|291598274|gb|EFF29367.1| GTP pyrophosphokinase [Enterococcus faecium U0317]
gi|291601565|gb|EFF31832.1| GTP pyrophosphokinase [Enterococcus faecium E1039]
gi|291605303|gb|EFF34758.1| GTP pyrophosphokinase [Enterococcus faecium E1162]
gi|313600272|gb|EFR79115.1| GTP diphosphokinase [Enterococcus faecium TX0133C]
gi|313645481|gb|EFS10061.1| GTP diphosphokinase [Enterococcus faecium TX0082]
gi|364093929|gb|EHM36159.1| GTP pyrophosphokinase [Enterococcus faecium E4452]
gi|364094941|gb|EHM37052.1| GTP pyrophosphokinase [Enterococcus faecium E4453]
gi|378939511|gb|AFC64583.1| GTP diphosphokinase [Enterococcus faecium Aus0004]
gi|388534871|gb|AFK60063.1| GTP diphosphokinase [Enterococcus faecium DO]
gi|402923904|gb|EJX44154.1| GTP diphosphokinase [Enterococcus faecium S447]
gi|402925120|gb|EJX45291.1| GTP diphosphokinase [Enterococcus faecium V689]
gi|402925823|gb|EJX45917.1| GTP diphosphokinase [Enterococcus faecium R501]
gi|402932657|gb|EJX52146.1| GTP diphosphokinase [Enterococcus faecium R499]
gi|402935071|gb|EJX54355.1| GTP diphosphokinase [Enterococcus faecium R497]
gi|402936556|gb|EJX55726.1| GTP diphosphokinase [Enterococcus faecium R496]
gi|402940183|gb|EJX59039.1| GTP diphosphokinase [Enterococcus faecium R494]
gi|402946666|gb|EJX64923.1| GTP diphosphokinase [Enterococcus faecium R446]
gi|402949655|gb|EJX67700.1| GTP diphosphokinase [Enterococcus faecium P1986]
gi|402950598|gb|EJX68588.1| GTP diphosphokinase [Enterococcus faecium P1190]
gi|402956167|gb|EJX73641.1| GTP diphosphokinase [Enterococcus faecium P1140]
gi|402957308|gb|EJX74705.1| GTP diphosphokinase [Enterococcus faecium P1137]
gi|402963682|gb|EJX80533.1| GTP diphosphokinase [Enterococcus faecium P1139]
gi|402968072|gb|EJX84574.1| GTP diphosphokinase [Enterococcus faecium ERV99]
gi|402969316|gb|EJX85739.1| GTP diphosphokinase [Enterococcus faecium P1123]
gi|402971897|gb|EJX88137.1| GTP diphosphokinase [Enterococcus faecium ERV69]
gi|402976533|gb|EJX92419.1| GTP diphosphokinase [Enterococcus faecium ERV38]
gi|402981157|gb|EJX96705.1| GTP diphosphokinase [Enterococcus faecium ERV26]
gi|402981321|gb|EJX96860.1| GTP diphosphokinase [Enterococcus faecium ERV168]
gi|402988221|gb|EJY03239.1| GTP diphosphokinase [Enterococcus faecium ERV165]
gi|402988601|gb|EJY03598.1| GTP diphosphokinase [Enterococcus faecium ERV161]
gi|402991807|gb|EJY06555.1| GTP diphosphokinase [Enterococcus faecium ERV102]
gi|402995444|gb|EJY09907.1| GTP diphosphokinase [Enterococcus faecium ERV1]
gi|403001134|gb|EJY15206.1| GTP diphosphokinase [Enterococcus faecium E422]
gi|403001881|gb|EJY15900.1| GTP diphosphokinase [Enterococcus faecium E417]
gi|403004240|gb|EJY18059.1| GTP diphosphokinase [Enterococcus faecium C621]
gi|403009667|gb|EJY23096.1| GTP diphosphokinase [Enterococcus faecium C497]
gi|403012474|gb|EJY25699.1| GTP diphosphokinase [Enterococcus faecium C1904]
gi|403014462|gb|EJY27465.1| GTP diphosphokinase [Enterococcus faecium 515]
gi|403020940|gb|EJY33429.1| GTP diphosphokinase [Enterococcus faecium 514]
gi|403021466|gb|EJY33924.1| GTP diphosphokinase [Enterococcus faecium 513]
gi|403028235|gb|EJY40070.1| GTP diphosphokinase [Enterococcus faecium 511]
gi|403033499|gb|EJY44999.1| GTP diphosphokinase [Enterococcus faecium 509]
gi|403036143|gb|EJY47507.1| GTP diphosphokinase [Enterococcus faecium 506]
gi|403040620|gb|EJY51683.1| GTP diphosphokinase [Enterococcus faecium 503]
gi|403040883|gb|EJY51930.1| GTP diphosphokinase [Enterococcus faecium 504]
gi|404455256|gb|EKA02115.1| GTP diphosphokinase [Enterococcus sp. GMD4E]
gi|404459225|gb|EKA05595.1| GTP diphosphokinase [Enterococcus sp. GMD3E]
gi|404464985|gb|EKA10494.1| GTP diphosphokinase [Enterococcus sp. GMD2E]
gi|404469816|gb|EKA14531.1| GTP diphosphokinase [Enterococcus sp. GMD1E]
gi|410735069|gb|EKQ76986.1| GTP diphosphokinase [Enterococcus sp. GMD5E]
gi|425723752|gb|EKU86639.1| RelA/SpoT family protein [Enterococcus durans FB129-CNAB-4]
gi|430439268|gb|ELA49634.1| RelA/SpoT family protein [Enterococcus faecium E0045]
gi|430441693|gb|ELA51764.1| RelA/SpoT family protein [Enterococcus faecium E0120]
gi|430444965|gb|ELA54762.1| RelA/SpoT family protein [Enterococcus faecium E0164]
gi|430480102|gb|ELA57296.1| RelA/SpoT family protein [Enterococcus faecium E0333]
gi|430481238|gb|ELA58395.1| RelA/SpoT family protein [Enterococcus faecium E0269]
gi|430487976|gb|ELA64669.1| RelA/SpoT family protein [Enterococcus faecium E0680]
gi|430490422|gb|ELA66947.1| RelA/SpoT family protein [Enterococcus faecium E0688]
gi|430496035|gb|ELA72155.1| RelA/SpoT family protein [Enterococcus faecium E1050]
gi|430535658|gb|ELA76057.1| RelA/SpoT family protein [Enterococcus faecium E1185]
gi|430540113|gb|ELA80331.1| RelA/SpoT family protein [Enterococcus faecium E1258]
gi|430540337|gb|ELA80540.1| RelA/SpoT family protein [Enterococcus faecium E1133]
gi|430543493|gb|ELA83555.1| RelA/SpoT family protein [Enterococcus faecium E1552]
gi|430544143|gb|ELA84187.1| RelA/SpoT family protein [Enterococcus faecium E1392]
gi|430550791|gb|ELA90561.1| RelA/SpoT family protein [Enterococcus faecium E1574]
gi|430551236|gb|ELA91005.1| RelA/SpoT family protein [Enterococcus faecium E1573]
gi|430554665|gb|ELA94250.1| RelA/SpoT family protein [Enterococcus faecium E1575]
gi|430556084|gb|ELA95600.1| RelA/SpoT family protein [Enterococcus faecium E1576]
gi|430559912|gb|ELA99236.1| RelA/SpoT family protein [Enterococcus faecium E1578]
gi|430569791|gb|ELB08777.1| RelA/SpoT family protein [Enterococcus faecium E1620]
gi|430572417|gb|ELB11279.1| RelA/SpoT family protein [Enterococcus faecium E1622]
gi|430576923|gb|ELB15548.1| RelA/SpoT family protein [Enterococcus faecium E1623]
gi|430579335|gb|ELB17844.1| RelA/SpoT family protein [Enterococcus faecium E1626]
gi|430584052|gb|ELB22403.1| RelA/SpoT family protein [Enterococcus faecium E1630]
gi|430585200|gb|ELB23495.1| RelA/SpoT family protein [Enterococcus faecium E1634]
gi|430590980|gb|ELB29025.1| RelA/SpoT family protein [Enterococcus faecium E1731]
gi|430605173|gb|ELB42578.1| RelA/SpoT family protein [Enterococcus faecium E2071]
gi|430611172|gb|ELB48282.1| RelA/SpoT family protein [Enterococcus faecium E2134]
gi|430611446|gb|ELB48536.1| RelA/SpoT family protein [Enterococcus faecium E2297]
gi|430616688|gb|ELB53583.1| RelA/SpoT family protein [Enterococcus faecium E2883]
gi|430623229|gb|ELB59929.1| RelA/SpoT family protein [Enterococcus faecium E3346]
gi|430628052|gb|ELB64509.1| RelA/SpoT family protein [Enterococcus faecium E4215]
gi|430629449|gb|ELB65850.1| RelA/SpoT family protein [Enterococcus faecium E1321]
gi|430633038|gb|ELB69221.1| RelA/SpoT family protein [Enterococcus faecium E1644]
gi|430635627|gb|ELB71720.1| RelA/SpoT family protein [Enterococcus faecium E2369]
gi|430639598|gb|ELB75471.1| RelA/SpoT family protein [Enterococcus faecium E2560]
gi|430641221|gb|ELB77034.1| RelA/SpoT family protein [Enterococcus faecium E4389]
gi|430644484|gb|ELB80099.1| RelA/SpoT family protein [Enterococcus faecium E6012]
gi|430645783|gb|ELB81286.1| RelA/SpoT family protein [Enterococcus faecium E6045]
Length = 737
Score = 175 bits (444), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 138/421 (32%), Positives = 199/421 (47%), Gaps = 98/421 (23%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA +A AH GQFRK+G+PY+ H I ILA L K TV G LHDVV+D
Sbjct: 28 VEKACEYATAAHDGQFRKSGEPYIIHPIQVAGILADL-----KMDPHTVATGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L + EEFGD+VA LV GV++L I + H E+LA+ M
Sbjct: 83 TEITLEDLREEFGDDVAMLVDGVTKLGKIK--YKSHE-----------EQLAENHRKMLL 129
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
A+AQ+ +I LA RL + LK ED R++ + +
Sbjct: 130 ----------AMAQDLRVIMVKLADRLHNMRTLKHLREDKQ---------RRIAQETLEI 170
Query: 283 WSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
++P +R+G SR I + L R + + + H++ K R
Sbjct: 171 YAPLAHRLGISR-IKWELEDTAL--RYLNPKQYYRIV--HLMQTK--------------R 211
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
+R K++ + V+D IA L G+ +
Sbjct: 212 EEREKYV------------SGTVEDIRIATEEL-------------------GIFAEIYG 240
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L +H W P
Sbjct: 241 RPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLGAIHTKWKP 291
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ G F DYI PK + YQSLHT V GP G+ +E+QIRTQ+MHE AE G+AAHW YKE N
Sbjct: 292 MPGRFKDYIAMPKANMYQSLHTTVIGPAGNPVEIQIRTQEMHEIAEFGVAAHWAYKEGKN 351
Query: 522 K 522
+
Sbjct: 352 E 352
>gi|47094426|ref|ZP_00232112.1| GTP pyrophosphokinase [Listeria monocytogenes str. 4b H7858]
gi|47017201|gb|EAL08048.1| GTP pyrophosphokinase [Listeria monocytogenes str. 4b H7858]
Length = 724
Score = 175 bits (444), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 136/428 (31%), Positives = 201/428 (46%), Gaps = 97/428 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA+ +H QFRK+G+PY+ H I IL L K TV +G LHDVV+D
Sbjct: 14 VKKAYEFARDSHKEQFRKSGEPYIIHPIQVAGILVEL-----KMDPSTVASGFLHDVVED 68
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L +EE FG EVA LV GV++L I HEE + N R
Sbjct: 69 TPVTLADLEEVFGSEVAMLVDGVTKLGKIK--------------YKSHEE--QQAENHRK 112
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
++ A+AQ+ +I LA RL + L ++ Q R++ + ++
Sbjct: 113 MFI-------AMAQDIRVILIKLADRL------HNMRTLKHLPVEKQ--RRIANETLEIF 157
Query: 284 SP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
+P +R+G SR + + L R + + + H++ K R
Sbjct: 158 APLAHRLGISR-VKWELEDTAL--RYLNPQQYYRIV--HLMKQK--------------RD 198
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
R ++LHD V+ L L ++ +S R
Sbjct: 199 ARERYLHD------------VIDGVNENLDEL-------------------NIQADISGR 227
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L I+H W P+
Sbjct: 228 PKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLGIIHTRWKPM 278
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAHW YKE G
Sbjct: 279 PGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAHWAYKE-GKV 337
Query: 523 LQSISSMD 530
+ S +S D
Sbjct: 338 VNSKTSFD 345
>gi|431702948|ref|ZP_19525071.1| RelA/SpoT family protein [Enterococcus faecium E1904]
gi|430597031|gb|ELB34842.1| RelA/SpoT family protein [Enterococcus faecium E1904]
Length = 737
Score = 175 bits (444), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 138/421 (32%), Positives = 199/421 (47%), Gaps = 98/421 (23%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA +A AH GQFRK+G+PY+ H I ILA L K TV G LHDVV+D
Sbjct: 28 VEKACEYATAAHDGQFRKSGEPYIIHPIQVAGILADL-----KMDPHTVATGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L + EEFGD+VA LV GV++L I + H E+LA+ M
Sbjct: 83 TEITLEDLREEFGDDVAMLVDGVTKLGKIK--YKSHE-----------EQLAENHRKMLL 129
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
A+AQ+ +I LA RL + LK ED R++ + +
Sbjct: 130 ----------AMAQDLRVIMVKLADRLHNMRTLKHLREDKQ---------RRIAQETLEI 170
Query: 283 WSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
++P +R+G SR I + L R + + + H++ K R
Sbjct: 171 YAPLAHRLGISR-IKWELEDTAL--RYLNPKQYYRIV--HLMQTK--------------R 211
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
+R K++ + V+D IA L G+ +
Sbjct: 212 EEREKYV------------SGTVEDIRIATEEL-------------------GIFAEIYG 240
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L +H W P
Sbjct: 241 RPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLGAIHTKWKP 291
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ G F DYI PK + YQSLHT V GP G+ +E+QIRTQ+MHE AE G+AAHW YKE N
Sbjct: 292 MPGRFKDYIAMPKANMYQSLHTTVIGPAGNPVEIQIRTQEMHEIAEFGVAAHWAYKEGKN 351
Query: 522 K 522
+
Sbjct: 352 E 352
>gi|425044315|ref|ZP_18448481.1| GTP diphosphokinase [Enterococcus faecium 510]
gi|403030120|gb|EJY41832.1| GTP diphosphokinase [Enterococcus faecium 510]
Length = 737
Score = 175 bits (444), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 138/421 (32%), Positives = 199/421 (47%), Gaps = 98/421 (23%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA +A AH GQFRK+G+PY+ H I ILA L K TV G LHDVV+D
Sbjct: 28 VEKACEYATAAHDGQFRKSGEPYIIHPIQVAGILADL-----KMDPHTVATGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L + EEFGD+VA LV GV++L I + H E+LA+ M
Sbjct: 83 TEITLEDLREEFGDDVAMLVDGVTKLGKIK--YKSHE-----------EQLAENHRKMLL 129
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
A+AQ+ +I LA RL + LK ED R++ + +
Sbjct: 130 ----------AMAQDLRVIMVKLADRLHNMRTLKHLREDKQ---------RRIAQETLEI 170
Query: 283 WSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
++P +R+G SR I + L R + + + H++ K R
Sbjct: 171 YAPLAHRLGISR-IKWELEDTAL--RYLNPKQYYRIV--HLMQTK--------------R 211
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
+R K++ + V+D IA L G+ +
Sbjct: 212 EEREKYV------------SGTVEDIRIATEEL-------------------GIFAEIYG 240
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L +H W P
Sbjct: 241 RPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLGAIHTKWKP 291
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ G F DYI PK + YQSLHT V GP G+ +E+QIRTQ+MHE AE G+AAHW YKE N
Sbjct: 292 MPGRFKDYIAMPKANMYQSLHTTVIGPAGNPVEIQIRTQEMHEIAEFGVAAHWAYKEGKN 351
Query: 522 K 522
+
Sbjct: 352 E 352
>gi|227552630|ref|ZP_03982679.1| GTP diphosphokinase [Enterococcus faecium TX1330]
gi|257888143|ref|ZP_05667796.1| GTP pyrophosphokinase [Enterococcus faecium 1,141,733]
gi|293378678|ref|ZP_06624837.1| GTP diphosphokinase [Enterococcus faecium PC4.1]
gi|424764268|ref|ZP_18191711.1| GTP diphosphokinase [Enterococcus faecium TX1337RF]
gi|431040301|ref|ZP_19492808.1| RelA/SpoT family protein [Enterococcus faecium E1590]
gi|431750927|ref|ZP_19539621.1| RelA/SpoT family protein [Enterococcus faecium E2620]
gi|431758269|ref|ZP_19546897.1| RelA/SpoT family protein [Enterococcus faecium E3083]
gi|431763734|ref|ZP_19552283.1| RelA/SpoT family protein [Enterococcus faecium E3548]
gi|227178256|gb|EEI59228.1| GTP diphosphokinase [Enterococcus faecium TX1330]
gi|257824197|gb|EEV51129.1| GTP pyrophosphokinase [Enterococcus faecium 1,141,733]
gi|292642718|gb|EFF60869.1| GTP diphosphokinase [Enterococcus faecium PC4.1]
gi|402419837|gb|EJV52110.1| GTP diphosphokinase [Enterococcus faecium TX1337RF]
gi|430562153|gb|ELB01406.1| RelA/SpoT family protein [Enterococcus faecium E1590]
gi|430616185|gb|ELB53109.1| RelA/SpoT family protein [Enterococcus faecium E2620]
gi|430617932|gb|ELB54796.1| RelA/SpoT family protein [Enterococcus faecium E3083]
gi|430622107|gb|ELB58848.1| RelA/SpoT family protein [Enterococcus faecium E3548]
Length = 786
Score = 175 bits (444), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 137/421 (32%), Positives = 199/421 (47%), Gaps = 98/421 (23%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA +A AH GQFRK+G+PY+ H I ILA L K TV G LHDVV+D
Sbjct: 77 VEKACEYATAAHDGQFRKSGEPYIIHPIQVAGILADL-----KMDPHTVATGFLHDVVED 131
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L + EEFGD+VA LV GV++L I + H E+LA+ M
Sbjct: 132 TEVTLEDLREEFGDDVAMLVDGVTKLGKIK--YKSHE-----------EQLAENHRKMLL 178
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
A+AQ+ +I LA RL + LK ED R++ + +
Sbjct: 179 ----------AMAQDLRVIMVKLADRLHNMRTLKHLREDKQ---------RRIAQETLEI 219
Query: 283 WSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
++P +R+G SR I + L R + + + H++ K R
Sbjct: 220 YAPLAHRLGISR-IKWELEDTAL--RYLNPKQYYRIV--HLMQTK--------------R 260
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
+R K+++ V+D +A L G+ +
Sbjct: 261 EEREKYVNG------------TVEDIRVATEEL-------------------GIFAEIYG 289
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L +H W P
Sbjct: 290 RPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLGAIHTKWKP 340
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ G F DYI PK + YQSLHT V GP G+ +E+QIRTQ+MHE AE G+AAHW YKE N
Sbjct: 341 MPGRFKDYIAMPKANMYQSLHTTVIGPAGNPVEIQIRTQEMHEIAEFGVAAHWAYKEGKN 400
Query: 522 K 522
+
Sbjct: 401 E 401
>gi|425054812|ref|ZP_18458314.1| GTP diphosphokinase [Enterococcus faecium 505]
gi|430840370|ref|ZP_19458295.1| RelA/SpoT family protein [Enterococcus faecium E1007]
gi|431064204|ref|ZP_19493551.1| RelA/SpoT family protein [Enterococcus faecium E1604]
gi|431124683|ref|ZP_19498679.1| RelA/SpoT family protein [Enterococcus faecium E1613]
gi|431593365|ref|ZP_19521694.1| RelA/SpoT family protein [Enterococcus faecium E1861]
gi|431741443|ref|ZP_19530348.1| RelA/SpoT family protein [Enterococcus faecium E2039]
gi|403035121|gb|EJY46526.1| GTP diphosphokinase [Enterococcus faecium 505]
gi|430495135|gb|ELA71342.1| RelA/SpoT family protein [Enterococcus faecium E1007]
gi|430566968|gb|ELB06056.1| RelA/SpoT family protein [Enterococcus faecium E1613]
gi|430568845|gb|ELB07875.1| RelA/SpoT family protein [Enterococcus faecium E1604]
gi|430591242|gb|ELB29280.1| RelA/SpoT family protein [Enterococcus faecium E1861]
gi|430601621|gb|ELB39215.1| RelA/SpoT family protein [Enterococcus faecium E2039]
Length = 786
Score = 175 bits (444), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 137/421 (32%), Positives = 199/421 (47%), Gaps = 98/421 (23%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA +A AH GQFRK+G+PY+ H I ILA L K TV G LHDVV+D
Sbjct: 77 VEKACEYATAAHDGQFRKSGEPYIIHPIQVAGILADL-----KMDPHTVATGFLHDVVED 131
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L + EEFGD+VA LV GV++L I + H E+LA+ M
Sbjct: 132 TEVTLEDLREEFGDDVAMLVDGVTKLGKIK--YKSHE-----------EQLAENHRKMLL 178
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
A+AQ+ +I LA RL + LK ED R++ + +
Sbjct: 179 ----------AMAQDLRVIMVKLADRLHNMRTLKHLREDKQ---------RRIAQETLEI 219
Query: 283 WSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
++P +R+G SR I + L R + + + H++ K R
Sbjct: 220 YAPLAHRLGISR-IKWELEDTAL--RYLNPKQYYRIV--HLMQTK--------------R 260
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
+R K+++ V+D +A L G+ +
Sbjct: 261 EEREKYVNG------------TVEDIRVATEEL-------------------GIFAEIYG 289
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L +H W P
Sbjct: 290 RPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLGAIHTKWKP 340
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ G F DYI PK + YQSLHT V GP G+ +E+QIRTQ+MHE AE G+AAHW YKE N
Sbjct: 341 MPGRFKDYIAMPKANMYQSLHTTVIGPAGNPVEIQIRTQEMHEIAEFGVAAHWAYKEGKN 400
Query: 522 K 522
+
Sbjct: 401 E 401
>gi|294618771|ref|ZP_06698298.1| GTP pyrophosphokinase [Enterococcus faecium E1679]
gi|291594959|gb|EFF26309.1| GTP pyrophosphokinase [Enterococcus faecium E1679]
Length = 737
Score = 175 bits (443), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 138/421 (32%), Positives = 199/421 (47%), Gaps = 98/421 (23%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA +A AH GQFRK+G+PY+ H I ILA L K TV G LHDVV+D
Sbjct: 28 VEKACEYATAAHDGQFRKSGEPYIIHPIQVAGILADL-----KMDPHTVATGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L + EEFGD+VA LV GV++L I + H E+LA+ M
Sbjct: 83 TEITLEDLREEFGDDVAMLVDGVTKLGKIK--YKSHE-----------EQLAENHRKMLL 129
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
A+AQ+ +I LA RL + LK ED R++ + +
Sbjct: 130 ----------AMAQDLRVIMVKLADRLHNMRTLKHLREDKQ---------RRIAQETLEI 170
Query: 283 WSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
++P +R+G SR I + L R + + + H++ K R
Sbjct: 171 YAPLAHRLGISR-IKWELEDTAL--RYLNPKQYYRIV--HLMQTK--------------R 211
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
+R K++ + V+D IA L G+ +
Sbjct: 212 EEREKYV------------SGTVEDIRIATEEL-------------------GIFAEIYG 240
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L +H W P
Sbjct: 241 RPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLGAIHTKWKP 291
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ G F DYI PK + YQSLHT V GP G+ +E+QIRTQ+MHE AE G+AAHW YKE N
Sbjct: 292 MPGRFKDYIAMPKANMYQSLHTTVIGPAGNPVEIQIRTQEMHEIAEFGVAAHWAYKEGKN 351
Query: 522 K 522
+
Sbjct: 352 E 352
>gi|297564854|ref|YP_003683826.1| (p)ppGpp synthetase I SpoT/RelA [Meiothermus silvanus DSM 9946]
gi|296849303|gb|ADH62318.1| (p)ppGpp synthetase I, SpoT/RelA [Meiothermus silvanus DSM 9946]
Length = 738
Score = 175 bits (443), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 154/488 (31%), Positives = 232/488 (47%), Gaps = 97/488 (19%)
Query: 68 LSTKVDF----LWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTG 123
+S VD LW +LE + + P +V+ A+ FA AH GQ RK+G
Sbjct: 1 MSQAVDISPTQLWARLEPK----------IAYLPPAEQGRVRTALEFAFAAHQGQLRKSG 50
Query: 124 DPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLV 183
+PY+ H + ILA L + +T++AG+LHD V+D IEE FG V ++V
Sbjct: 51 EPYIVHPVAVAEILAELGLDA-----ETLMAGLLHDTVEDTEVKPEDIEERFGTAVRRIV 105
Query: 184 AGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIW 243
G +++S + +L V + EE R ++R ++ A+A++ +I
Sbjct: 106 EGETKVSKLYKLAH-----QVAEERPSLEE--QRAEDLRQMFI-------AMAEDVRIII 151
Query: 244 CSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP-RNRVGYSRRITTIVSSP 302
LA RL L L F + P ++ + +++P +R+G I I
Sbjct: 152 VKLADRL------HNLRTLEF--MPPHKQTRIARETLEIYAPLAHRLG----IGQI---- 195
Query: 303 PLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAK 362
+ +D SF + + DLL + KS A+++A
Sbjct: 196 ----KWELEDLSFRYLEPEAYA--DLLGRL--------------------KSHRAEREAA 229
Query: 363 VVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHK 422
V + A E L+++ ++ S I G EVT R K LYSI+ KM+R+ + +
Sbjct: 230 VERGKE-------ALEAVLQRDSVLGAS-IQGYEVT--GRTKHLYSIWKKMQREGRALEQ 279
Query: 423 VYDARALRVVVGDK-NGTLHGPAI---QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGY 478
+YD ALRV++ + L A+ Q CY +L +VH LW PI G DYI PKP+GY
Sbjct: 280 IYDLLALRVILEPRPTPNLEEKAMREKQVCYHVLGLVHALWQPIPGRVKDYIAVPKPNGY 339
Query: 479 QSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK-------ETGNKLQSISSMDE 531
QSLHT V G LEVQIRT++MH+ AE+G+AAHWLYK E ++ + S+ E
Sbjct: 340 QSLHTTVIAGSGLPLEVQIRTREMHQIAEYGIAAHWLYKQGLTDPEEIKRRVDWLRSIQE 399
Query: 532 SDIEASSS 539
E SSS
Sbjct: 400 WQAEFSSS 407
>gi|257899574|ref|ZP_05679227.1| RelA/SpoT protein [Enterococcus faecium Com15]
gi|257837486|gb|EEV62560.1| RelA/SpoT protein [Enterococcus faecium Com15]
Length = 737
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 137/421 (32%), Positives = 199/421 (47%), Gaps = 98/421 (23%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA +A AH GQFRK+G+PY+ H I ILA L K TV G LHDVV+D
Sbjct: 28 VEKACEYATAAHDGQFRKSGEPYIIHPIQVAGILADL-----KMDPHTVATGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L + EEFGD+VA LV GV++L I + H E+LA+ M
Sbjct: 83 TEVTLEDLREEFGDDVAMLVDGVTKLGKIK--YKSHE-----------EQLAENHRKMLL 129
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
A+AQ+ +I LA RL + LK ED R++ + +
Sbjct: 130 ----------AMAQDLRVIMVKLADRLHNMRTLKHLREDKQ---------RRIAQETLEI 170
Query: 283 WSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
++P +R+G SR I + L R + + + H++ K R
Sbjct: 171 YAPLAHRLGISR-IKWELEDTAL--RYLNPKQYYRIV--HLMQTK--------------R 211
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
+R K+++ V+D +A L G+ +
Sbjct: 212 EEREKYVNG------------TVEDIRVATEEL-------------------GIFAEIYG 240
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L +H W P
Sbjct: 241 RPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLGAIHTKWKP 291
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ G F DYI PK + YQSLHT V GP G+ +E+QIRTQ+MHE AE G+AAHW YKE N
Sbjct: 292 MPGRFKDYIAMPKANMYQSLHTTVIGPAGNPVEIQIRTQEMHEIAEFGVAAHWAYKEGKN 351
Query: 522 K 522
+
Sbjct: 352 E 352
>gi|257896966|ref|ZP_05676619.1| RelA/SpoT protein [Enterococcus faecium Com12]
gi|257833531|gb|EEV59952.1| RelA/SpoT protein [Enterococcus faecium Com12]
Length = 737
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 137/421 (32%), Positives = 199/421 (47%), Gaps = 98/421 (23%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA +A AH GQFRK+G+PY+ H I ILA L K TV G LHDVV+D
Sbjct: 28 VEKACEYATAAHDGQFRKSGEPYIIHPIQVAGILADL-----KMDPHTVATGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L + EEFGD+VA LV GV++L I + H E+LA+ M
Sbjct: 83 TEVTLEDLREEFGDDVAMLVDGVTKLGKIK--YKSHE-----------EQLAENHRKMLL 129
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
A+AQ+ +I LA RL + LK ED R++ + +
Sbjct: 130 ----------AMAQDLRVIMVKLADRLHNMRTLKHLREDKQ---------RRIAQETLEI 170
Query: 283 WSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
++P +R+G SR I + L R + + + H++ K R
Sbjct: 171 YAPLAHRLGISR-IKWELEDTAL--RYLNPKQYYRIV--HLMQTK--------------R 211
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
+R K+++ V+D +A L G+ +
Sbjct: 212 EEREKYVNG------------TVEDIRVATEEL-------------------GIFAEIYG 240
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L +H W P
Sbjct: 241 RPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLGAIHTKWKP 291
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ G F DYI PK + YQSLHT V GP G+ +E+QIRTQ+MHE AE G+AAHW YKE N
Sbjct: 292 MPGRFKDYIAMPKANMYQSLHTTVIGPAGNPVEIQIRTQEMHEIAEFGVAAHWAYKEGKN 351
Query: 522 K 522
+
Sbjct: 352 E 352
>gi|336437345|ref|ZP_08617051.1| hypothetical protein HMPREF0988_02636 [Lachnospiraceae bacterium
1_4_56FAA]
gi|336005471|gb|EGN35516.1| hypothetical protein HMPREF0988_02636 [Lachnospiraceae bacterium
1_4_56FAA]
Length = 767
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 122/429 (28%), Positives = 205/429 (47%), Gaps = 95/429 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA A AH+GQ RK+G+PY+ H + G ILA L + +T+VAG+LHD V+D
Sbjct: 54 IEKAYKTANEAHNGQVRKSGEPYIIHPLWVGIILADL-----EMDKETIVAGMLHDAVED 108
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L + EFG+EVA LV GV++L Q + ++L + N+R
Sbjct: 109 TDMTLDDVSREFGEEVALLVDGVTKLG---------------QLSYSQDKLEIQAENLRK 153
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
++ A+A++ +I LA RL + L F ++P+ ++ + ++
Sbjct: 154 MFL-------AMAKDIRVIIIKLADRL------HNMRTLEF--MRPEKQKEKAKETMDIY 198
Query: 284 SP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
+P R+G S+ + DD S S ++ + +V D+ +
Sbjct: 199 APIAQRLGISKI------------KIELDDLSLK------YSQPEVYQQLV-HDLNERKT 239
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
KR +F+ + K +Q + R
Sbjct: 240 KREEFVQQIVSEVSTHMKNAHIQ-------------------------------AKVYGR 268
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
+K +SI+ KM ++ + +VYD A+R++V +++ CY+ L ++H ++ PI
Sbjct: 269 VKHFFSIYKKMVNQNKTLDQVYDLFAVRIIV---------DSVKDCYAALGVIHEMYTPI 319
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
G F DYI PKP+ YQSLHT + GP G E+QIRT++MH+ AE+G+AAHW YKE G+
Sbjct: 320 PGRFKDYIAMPKPNMYQSLHTTLMGPSGQPFEIQIRTEEMHKTAEYGIAAHWKYKEGGDA 379
Query: 523 LQSISSMDE 531
+ + + +E
Sbjct: 380 AKVVQAQEE 388
>gi|431381389|ref|ZP_19510991.1| RelA/SpoT family protein [Enterococcus faecium E1627]
gi|430581751|gb|ELB20189.1| RelA/SpoT family protein [Enterococcus faecium E1627]
Length = 737
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 138/421 (32%), Positives = 199/421 (47%), Gaps = 98/421 (23%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA +A AH GQFRK+G+PY+ H I ILA L K TV G LHDVV+D
Sbjct: 28 VEKACEYATAAHDGQFRKSGEPYIIHPIQVAGILADL-----KMDPHTVATGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L + EEFGD+VA LV GV++L I + H E+LA+ M
Sbjct: 83 TEITLEDLREEFGDDVAMLVDGVTKLGKIK--YKSHE-----------EQLAENHRKMLL 129
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
A+AQ+ +I LA RL + LK ED R++ + +
Sbjct: 130 ----------AMAQDLRVIMVKLADRLHNMRTLKHLREDKQ---------RRIAQETLEI 170
Query: 283 WSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
++P +R+G SR I + L R + + + H++ K R
Sbjct: 171 YAPLAHRLGISR-IKWELEDTAL--RYLNPKQYYRIV--HLMQTK--------------R 211
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
+R K++ + V+D IA L G+ +
Sbjct: 212 EEREKYV------------SGTVEDIRIATEEL-------------------GIFAEIYG 240
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L +H W P
Sbjct: 241 RPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLGAIHTKWKP 291
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ G F DYI PK + YQSLHT V GP G+ +E+QIRTQ+MHE AE G+AAHW YKE N
Sbjct: 292 MPGRFKDYIAMPKANMYQSLHTTVIGPAGNPVEIQIRTQEMHEIAEFGVAAHWAYKEGKN 351
Query: 522 K 522
+
Sbjct: 352 E 352
>gi|7141308|gb|AAF37283.1|AF225704_1 RSH3 [Arabidopsis thaliana]
Length = 712
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 147/434 (33%), Positives = 198/434 (45%), Gaps = 99/434 (22%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF DE V KA A++AH GQ R TGDPYL HC+ T AML+ G + VVAG
Sbjct: 207 HKIFEDESVIKAFYEAEKAHRGQMRATGDPYLQHCVET----AMLLADIGANST-VVVAG 261
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
ILHD +DD+ S I FG VA LV GVS+LS + R N T+ A
Sbjct: 262 ILHDTLDDSFMSYDYILRTFGSGVADLVEGVSQLSKLA------RENNTACKTVE----A 311
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
DRLH M L A ARA + LA RL + L P ++
Sbjct: 312 DRLHTM----FLAMADARA-------VLIKLADRLH--------NMMTLYALPPVKRQRF 352
Query: 276 RADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTF--DEHVLSMKDLLEAV 332
+ +++P NR+G S + ++ F D+H M D+LE
Sbjct: 353 AKETLEIFAPLANRLGIS------------SWKVKLENLCFKHLHPDQH-HEMSDMLEDS 399
Query: 333 VPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYI 392
D + +++ E+AL+KE SY
Sbjct: 400 F--------------------------------DEAMITSAIEKLEQALKKE---GISY- 423
Query: 393 PGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLL 452
+S R KSLYSI+ KM +K + + +++D LR++V ++ CY L
Sbjct: 424 ----HVVSGRHKSLYSIYCKMLKKKLTMDEIHDIHGLRLIVDNEKD---------CYKAL 470
Query: 453 DIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAA 512
+VH+LW + G+ DYI +PK +GYQSLHT V G LEVQIRT++MH AE G AA
Sbjct: 471 GVVHKLWSEVPGKLKDYISHPKFNGYQSLHTVVMGDGTIPLEVQIRTKEMHLQAEFGFAA 530
Query: 513 HWLYKETGNKLQSI 526
HW YKE K S
Sbjct: 531 HWRYKEGDCKHSSF 544
>gi|386359779|ref|YP_006058024.1| RelA/SpoT family (p)ppGpp synthetase [Thermus thermophilus JL-18]
gi|383508806|gb|AFH38238.1| (p)ppGpp synthetase, RelA/SpoT family [Thermus thermophilus JL-18]
Length = 724
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 142/450 (31%), Positives = 216/450 (48%), Gaps = 91/450 (20%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
+VQ+A FA+ AH GQ R++G+PY+TH + ILA L + DTV AG+LHD ++
Sbjct: 23 KVQEAYRFAEEAHRGQLRRSGEPYITHPVAVAEILAGL-----QMDADTVAAGLLHDTLE 77
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMR 222
D + +E FG V ++V G +++S + +L N+ G E A+ L M
Sbjct: 78 DCGVAPEELERRFGPTVRRIVEGETKVSKLYKL------ANLE----GEERRAEDLRQMF 127
Query: 223 TIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLAS 281
A+A++ +I LA RL L L+ + P+ +++ +
Sbjct: 128 I----------AMAEDVRIIIVKLADRLHNLRTLEH---------MPPEKQKRIAQETLE 168
Query: 282 MWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSD 340
+++P +R+G + + +D SF F LS
Sbjct: 169 IYAPLAHRLGMGQLKWEL------------EDLSFRYLHPEA------------FASLSA 204
Query: 341 RRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLS 400
R + T+ + + +++Q A L + +E L+ S + G EVT
Sbjct: 205 RIQATQ-----------EARERLIQKAIHLLQETLTRDELLQ-------SQLQGFEVT-- 244
Query: 401 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG-TLHGPAI---QCCYSLLDIVH 456
R K LYSI+ KM R+ + ++YD A+RV++ K T A+ Q CY +L +VH
Sbjct: 245 GRPKHLYSIWKKMEREGKTLEQIYDLLAVRVILDPKPAPTRESQALREKQVCYHVLGLVH 304
Query: 457 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 516
LW PI G DYI PKP+GYQSLHT V +G LEVQIRT++MH AE+G+AAHWLY
Sbjct: 305 ALWQPIPGRVKDYIAVPKPNGYQSLHTTVIALEGLPLEVQIRTREMHRVAEYGIAAHWLY 364
Query: 517 K-------ETGNKLQSISSMDESDIEASSS 539
K E ++ + S+ E E SSS
Sbjct: 365 KEGLTDPEEVKRRVSWLKSIQEWQKEFSSS 394
>gi|334127724|ref|ZP_08501627.1| GTP diphosphokinase [Centipeda periodontii DSM 2778]
gi|333388860|gb|EGK60030.1| GTP diphosphokinase [Centipeda periodontii DSM 2778]
Length = 743
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 133/451 (29%), Positives = 214/451 (47%), Gaps = 105/451 (23%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E++++A +A++AH GQ R +GD Y+ H ++ IL L +T+ A +LHDVV
Sbjct: 28 EKIRRAYVYAEKAHSGQVRISGDAYIMHPLNVAYILTSLHLDD-----ETICAALLHDVV 82
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNM 221
+D C +L +E +FG + +L+ GV++L I + + E++ +L N
Sbjct: 83 EDTCATLEEMEAQFGKNIMELIDGVTKLGRIEYMSK--------------EDV--KLENY 126
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLA 280
R ++ A+A++ +I LA RL + LK ED + + + ++ A LA
Sbjct: 127 RKMFL-------AMAKDIRVIMIKLADRLHNMRTLKYMREDKRHRIAKETL--EVYAPLA 177
Query: 281 SMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSD 340
NR+G S V L R + + +E +
Sbjct: 178 ------NRLGIS---NIKVELEDLCLRYLEPEAYYALVEE----------------VKHK 212
Query: 341 RRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLS 400
R++R F+ + S+ E LE + G+E +
Sbjct: 213 RQERQDFIRE----------------------SIQQIREKLE---------VAGIEAEIK 241
Query: 401 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 460
R K YSI+ KM+R + ++++YD A+RV+V +++ CY +L ++H +W
Sbjct: 242 GRAKHFYSIYRKMKRDNKSVNEIYDLSAVRVLVS---------SVKDCYGVLGVIHAMWK 292
Query: 461 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 520
PI G F DYI PK +GYQSLHT V G LE+QIRT+ MH+ +E G+AAHW YKE G
Sbjct: 293 PIPGRFKDYIAMPKSNGYQSLHTTVM-THGDPLEIQIRTKAMHQVSEFGIAAHWKYKEAG 351
Query: 521 NKLQSISSMDESDIEAS-----SSLSKDTDD 546
+SI + DE+D + S SL ++ DD
Sbjct: 352 ---RSIGATDENDQKMSWLRQMVSLQQEYDD 379
>gi|304436591|ref|ZP_07396560.1| GTP diphosphokinase [Selenomonas sp. oral taxon 149 str. 67H29BP]
gi|304370287|gb|EFM23943.1| GTP diphosphokinase [Selenomonas sp. oral taxon 149 str. 67H29BP]
Length = 739
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 143/474 (30%), Positives = 214/474 (45%), Gaps = 106/474 (22%)
Query: 80 EEQPGTFIVDGVDVTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILA 138
E +P T + ++ Y P + ++ +A FA AH GQ R +G+PY+ H +H IL
Sbjct: 4 ELKPVTLDMILEEIAAYQPNADINKIIRAYEFAANAHRGQERVSGEPYIVHPMHVAYILT 63
Query: 139 MLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRR 198
L +T+ A LHDVV+D +L IE FG V L+ GV++L I
Sbjct: 64 TLHLDD-----ETICAAFLHDVVEDTQTTLEEIEAVFGKNVMTLIDGVTKLGRIE----- 113
Query: 199 HRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKA 257
++ E++ +L N R ++ A+A++ +I LA RL + LK
Sbjct: 114 ---------SMSKEDV--KLENYRKMFL-------AMAKDIRVIMIKLADRLHNMRTLKY 155
Query: 258 ELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTT 317
ED + R R L NR+G S L R + +T
Sbjct: 156 MRED--------KRQRIARETLEVYAPLANRLGIS---GIKAELEDLCLRYLEPEAYYTL 204
Query: 318 FDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVAC 377
+E + RR+R +F+ D + AQ ++ AGI
Sbjct: 205 VEE----------------VKQKRRERQEFIQDAVQKIRAQ-----LETAGI-------- 235
Query: 378 EEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKN 437
E + R K YSI+ KM+R + I+++YD A+RV+V
Sbjct: 236 ------------------EAEIKGRAKHFYSIYRKMKRDNKSINEIYDLSAVRVLVS--- 274
Query: 438 GTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQI 497
++ CY +L ++H +W PI G F DYI PK +GYQSLHT V +G LE+QI
Sbjct: 275 ------TVKDCYGVLGVIHAMWKPIPGRFKDYIAMPKSNGYQSLHTTVM-TEGDPLEIQI 327
Query: 498 RTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEAS-----SSLSKDTDD 546
RT+ MH+ +E G+AAHW YKE G +S+ + DE+D + S SL K+ DD
Sbjct: 328 RTKAMHQISEFGIAAHWKYKEAG---RSVGAGDENDQKMSWLRQMVSLQKEYDD 378
>gi|300914191|ref|ZP_07131507.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter sp. X561]
gi|307724574|ref|YP_003904325.1| (p)ppGpp synthetase I SpoT/RelA [Thermoanaerobacter sp. X513]
gi|300889126|gb|EFK84272.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter sp. X561]
gi|307581635|gb|ADN55034.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter sp. X513]
Length = 719
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 128/416 (30%), Positives = 196/416 (47%), Gaps = 96/416 (23%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ KA FA AH GQ R +G+PY+ H I ILA L + + T+ AG+LHDV++D
Sbjct: 22 IYKAYDFAVNAHDGQIRNSGEPYIIHPIEVAYILAEL-----ELDITTIAAGLLHDVIED 76
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+ G + E FG E+A LV GV++L I ++ + NMR
Sbjct: 77 TDVTYGQLLEYFGKEIADLVDGVTKLGKIEY----------------KSKVEQQAENMRK 120
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
+ A+A++ +I LA RL + L + L Q ++ + ++
Sbjct: 121 MLI-------AMAKDIRVILIKLADRL------HNMRTLKYLPLDKQ--KEKAEETLEIY 165
Query: 284 SP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
+P +R+G S+ + L R DE + DL+E V + R+
Sbjct: 166 APIAHRLGISKIKWEL---EDLCLRYLHPDEYY-----------DLVEKVA-----AKRK 206
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
+R +F+ ++ + +E L KE+ G++ + R
Sbjct: 207 EREEFIQNI----------------------ITTIKEKL-KEM--------GIQAEVDGR 235
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K YSI+ KM+ ++ ++YD A+R++V ++ CY +L IVH LW PI
Sbjct: 236 PKHFYSIYKKMKTQNKTFEQIYDLLAVRIIVN---------TVKDCYGVLGIVHTLWKPI 286
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAHW YKE
Sbjct: 287 PGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEIQIRTWEMHKTAEYGIAAHWKYKE 342
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 13/108 (12%)
Query: 712 EASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMR 771
E + K+ LR +L W+++L+ ++ K + D V V P G+++
Sbjct: 347 EDEFDQKLSWLRQLLEWQKELKDAKEFMETL---KIDLFTDEV------FVFTPKGDVIN 397
Query: 772 LRSGSTAADAAMKVGLEGKLVL----VNGQLVLPNTELKDGDIVEVRV 815
L +GST D A + E L VNG++V N +LK+GDIVE+ V
Sbjct: 398 LPAGSTPIDFAYSIHTEIGHRLNGAKVNGKIVPINYQLKNGDIVEILV 445
>gi|46199657|ref|YP_005324.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Thermus
thermophilus HB27]
gi|384431896|ref|YP_005641256.1| (p)ppGpp synthetase I SpoT/RelA [Thermus thermophilus SG0.5JP17-16]
gi|46197283|gb|AAS81697.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Thermus
thermophilus HB27]
gi|333967364|gb|AEG34129.1| (p)ppGpp synthetase I, SpoT/RelA [Thermus thermophilus
SG0.5JP17-16]
Length = 727
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 142/450 (31%), Positives = 217/450 (48%), Gaps = 91/450 (20%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
+V++A FA+ AH GQ R++G+PY+TH + ILA L + DTV AG+LHD ++
Sbjct: 26 KVREAYRFAEEAHRGQLRRSGEPYITHPVAVAEILAGL-----QMDADTVAAGLLHDTLE 80
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMR 222
D + +E FG V ++V G +++S + +L N+ G E A+ L M
Sbjct: 81 DCGVAPEELERRFGPTVRRIVEGETKVSKLYKL------ANLE----GEERRAEDLRQMF 130
Query: 223 TIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLAS 281
A+A++ +I LA RL L L+ + P+ +++ +
Sbjct: 131 I----------AMAEDVRIIIVKLADRLHNLRTLEH---------MPPEKQKRIAQETLE 171
Query: 282 MWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSD 340
+++P +R+G + + +D SF F LS
Sbjct: 172 IYAPLAHRLGMGQLKWEL------------EDLSFRYLHPEA------------FASLSA 207
Query: 341 RRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLS 400
R + T+ + + +++Q A L +A +E L+ S + G EVT
Sbjct: 208 RIQATQ-----------EARERLIQKAIHLLQETLARDELLQ-------SQLQGFEVT-- 247
Query: 401 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG-TLHGPAI---QCCYSLLDIVH 456
R K LYSI+ KM R+ + ++YD A+RV++ K T A+ Q CY +L +VH
Sbjct: 248 GRPKHLYSIWKKMEREGKTLEQIYDLLAVRVILDPKPAPTRESQALREKQVCYHVLGLVH 307
Query: 457 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 516
LW PI G DYI PKP+GYQSLHT V +G LEVQIRT++MH AE+G+AAHWLY
Sbjct: 308 ALWQPIPGRVKDYIAVPKPNGYQSLHTTVIALEGLPLEVQIRTREMHRVAEYGIAAHWLY 367
Query: 517 K-------ETGNKLQSISSMDESDIEASSS 539
K E ++ + S+ E E SSS
Sbjct: 368 KEGLTDPEEVKRRVSWLKSIQEWQKEFSSS 397
>gi|420144910|ref|ZP_14652389.1| GTP pyrophosphokinase [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398403467|gb|EJN56709.1| GTP pyrophosphokinase [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 746
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 135/425 (31%), Positives = 205/425 (48%), Gaps = 101/425 (23%)
Query: 99 FNDEQV---QKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
NDE V +KA+ FA H QFR++G+PY+ H I ILA L K TV +G
Sbjct: 20 MNDEHVAFVKKALDFANYVHKEQFRQSGEPYIVHPIQVAAILAEL-----KMDPATVASG 74
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
LHDVV+D +LG I+E FG +VA +V GV++LS I + + +ELA
Sbjct: 75 FLHDVVEDTNITLGDIQELFGHDVAVIVDGVTKLSKIKYVAHK-------------DELA 121
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRK 274
+ M A+A++ ++ LA RL + LK L+P+ R+
Sbjct: 122 ENHRKM----------ILAMAKDLRVVMVKLADRLHNMRTLKH---------LRPEKQRR 162
Query: 275 MRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVV 333
+ + +++P +R+G S+ + E TA L +
Sbjct: 163 IANETLEIYAPLADRLGISQFKWEL-------EDTA-------------------LRYLN 196
Query: 334 PFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIP 393
P ++ + +H L S AQ++A + +EA+++ T +
Sbjct: 197 P-------QQYYRIVH-LMNSKRAQRQAYI--------------DEAIKQIKASMTDF-- 232
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
++ + R K +YSI+ KMR K ++YD A+RV+V I+ CY++L
Sbjct: 233 NIKYEIYGRPKHIYSIYKKMRDKHKQFEEIYDLLAIRVIVD---------TIKDCYAVLG 283
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+H W P+ G F DYI PK + YQSLHT V GP G LE+QIRT++MH+ AE+G+AAH
Sbjct: 284 AIHTKWKPMPGRFKDYIAMPKANMYQSLHTTVIGPKGQPLEIQIRTEEMHQVAEYGVAAH 343
Query: 514 WLYKE 518
W YKE
Sbjct: 344 WAYKE 348
>gi|326390128|ref|ZP_08211689.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter ethanolicus JW
200]
gi|325993776|gb|EGD52207.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter ethanolicus JW
200]
Length = 719
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 127/420 (30%), Positives = 194/420 (46%), Gaps = 96/420 (22%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
N E + KA FA AH GQ R +G+PY+ H I ILA L + + T+ AG+LHD
Sbjct: 18 NLELIYKAYDFAVNAHEGQMRNSGEPYIVHPIEVAYILADL-----ELDITTIAAGLLHD 72
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLH 219
V++D + + E FG E+A LV GV++L I ++ +
Sbjct: 73 VIEDTDVTYDQLMENFGKEIADLVDGVTKLGKIEY----------------KSKVEQQAE 116
Query: 220 NMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 279
NMR + A+A++ +I LA RL + L + L Q ++ +
Sbjct: 117 NMRKMLI-------AMAKDIRVILIKLADRL------HNMRTLKYLPLDKQ--KEKAEET 161
Query: 280 ASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDIL 338
+++P +R+G S+ + E H DL+E V
Sbjct: 162 LEIYAPIAHRLGISK--------------IKWELEDLCLRYLHPEEYYDLVEKVA----- 202
Query: 339 SDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVT 398
+ R++R +F+ ++ + +E L KE+ G++
Sbjct: 203 AKRKEREEFIQNI----------------------ITTIKEKL-KEM--------GIQAE 231
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+ R K YSI+ KM+ ++ ++YD A+R++V ++ CY +L IVH L
Sbjct: 232 VDGRPKHFYSIYKKMKTQNKTFEQIYDLLAVRIIVN---------TVKDCYGVLGIVHTL 282
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAHW YKE
Sbjct: 283 WKPIPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEIQIRTWEMHKTAEYGIAAHWKYKE 342
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 710 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 769
+ E + K+ LR +L W+++L+ ++ K + D V V P G++
Sbjct: 345 TTEDEFDQKLSWLRQLLEWQKELKDAKEFMETL---KIDLFTDEV------FVFTPKGDV 395
Query: 770 MRLRSGSTAADAAMKVGLEGKLVL----VNGQLVLPNTELKDGDIVEVRV 815
+ L +GST D A + E L VNG++V N +LK+GDIVE+ V
Sbjct: 396 INLPAGSTPIDFAYSIHTEIGHRLNGAKVNGKIVPINYQLKNGDIVEILV 445
>gi|381191174|ref|ZP_09898685.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Thermus
sp. RL]
gi|380450963|gb|EIA38576.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Thermus
sp. RL]
Length = 727
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 142/450 (31%), Positives = 217/450 (48%), Gaps = 91/450 (20%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
+V++A FA+ AH GQ R++G+PY+TH + ILA L + DTV AG+LHD ++
Sbjct: 26 KVREAYRFAEEAHRGQLRRSGEPYITHPVAVAEILAGL-----QMDADTVAAGLLHDTLE 80
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMR 222
D + +E FG V ++V G +++S + +L N+ G E A+ L M
Sbjct: 81 DCGVAPEELERRFGPTVRRIVEGETKVSKLYKL------ANLE----GEERRAEDLRQMF 130
Query: 223 TIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLAS 281
A+A++ +I LA RL L L+ + P+ +++ +
Sbjct: 131 I----------AMAEDVRIIIVKLADRLHNLRTLEH---------MPPEKQKRIAQETLE 171
Query: 282 MWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSD 340
+++P +R+G + + +D SF F LS
Sbjct: 172 IYAPLAHRLGMGQLKWEL------------EDLSFRYLHPEA------------FASLSA 207
Query: 341 RRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLS 400
R + T+ + + +++Q A L +A +E L+ S + G EVT
Sbjct: 208 RIQATQ-----------EARERLIQKAIHLLQETLARDELLQ-------SQLQGFEVT-- 247
Query: 401 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG-TLHGPAI---QCCYSLLDIVH 456
R K LYSI+ KM R+ + ++YD A+RV++ K T A+ Q CY +L +VH
Sbjct: 248 GRPKHLYSIWKKMEREGKTLEQIYDLLAVRVILDPKPAPTRESQALREKQVCYHVLGLVH 307
Query: 457 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 516
LW PI G DYI PKP+GYQSLHT V +G LEVQIRT++MH AE+G+AAHWLY
Sbjct: 308 ALWQPIPGRVKDYIAVPKPNGYQSLHTTVIALEGLPLEVQIRTREMHRVAEYGIAAHWLY 367
Query: 517 K-------ETGNKLQSISSMDESDIEASSS 539
K E ++ + S+ E E SSS
Sbjct: 368 KEGLTDPEEVKRRVSWLKSIQEWQKEFSSS 397
>gi|333394996|ref|ZP_08476815.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Lactobacillus coryniformis subsp. coryniformis KCTC
3167]
gi|336392924|ref|ZP_08574323.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Lactobacillus coryniformis subsp. torquens KCTC 3535]
Length = 746
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 135/425 (31%), Positives = 205/425 (48%), Gaps = 101/425 (23%)
Query: 99 FNDEQV---QKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
NDE V +KA+ FA H QFR++G+PY+ H I ILA L K TV +G
Sbjct: 20 MNDEHVAFVKKALDFATYVHKEQFRQSGEPYIVHPIQVAAILAEL-----KMDPATVASG 74
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
LHDVV+D +LG I+E FG +VA +V GV++LS I + + +ELA
Sbjct: 75 FLHDVVEDTNITLGDIQELFGHDVAVIVDGVTKLSKIKYVAHK-------------DELA 121
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRK 274
+ M A+A++ ++ LA RL + LK L+P+ R+
Sbjct: 122 ENHRKM----------ILAMAKDLRVVMVKLADRLHNMRTLKH---------LRPEKQRR 162
Query: 275 MRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVV 333
+ + +++P +R+G S+ + E TA L +
Sbjct: 163 IANETLEIYAPLADRLGISQFKWEL-------EDTA-------------------LRYLN 196
Query: 334 PFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIP 393
P ++ + +H L S AQ++A + +EA+++ T +
Sbjct: 197 P-------QQYYRIVH-LMNSKRAQRQAYI--------------DEAIKQIKASMTDF-- 232
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
++ + R K +YSI+ KMR K ++YD A+RV+V I+ CY++L
Sbjct: 233 NIKYEIYGRPKHIYSIYKKMRDKHKQFEEIYDLLAIRVIVD---------TIKDCYAVLG 283
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+H W P+ G F DYI PK + YQSLHT V GP G LE+QIRT++MH+ AE+G+AAH
Sbjct: 284 AIHTKWKPMPGRFKDYIAMPKANMYQSLHTTVIGPKGQPLEIQIRTEEMHQVAEYGVAAH 343
Query: 514 WLYKE 518
W YKE
Sbjct: 344 WAYKE 348
>gi|55981686|ref|YP_144983.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Thermus
thermophilus HB8]
gi|55773099|dbj|BAD71540.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (ppGpp
synthase) [Thermus thermophilus HB8]
Length = 727
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 142/450 (31%), Positives = 217/450 (48%), Gaps = 91/450 (20%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
+V++A FA+ AH GQ R++G+PY+TH + ILA L + DTV AG+LHD ++
Sbjct: 26 KVREAYRFAEEAHRGQLRRSGEPYITHPVAVAEILAGL-----QMDADTVAAGLLHDTLE 80
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMR 222
D + +E FG V ++V G +++S + +L N+ G E A+ L M
Sbjct: 81 DCGVAPEELERRFGPTVRRIVEGETKVSKLYKL------ANLE----GEERRAEDLRQMF 130
Query: 223 TIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLAS 281
A+A++ +I LA RL L L+ + P+ +++ +
Sbjct: 131 I----------AMAEDVRIIIVKLADRLHNLRTLEH---------MPPEKQKRIAQETLE 171
Query: 282 MWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSD 340
+++P +R+G + + +D SF F LS
Sbjct: 172 IYAPLAHRLGMGQLKWEL------------EDLSFRYLHPEA------------FASLSA 207
Query: 341 RRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLS 400
R + T+ + + +++Q A L +A +E L+ S + G EVT
Sbjct: 208 RIQATQ-----------EARERLIQRAIHLLQETLARDELLQ-------SQLQGFEVT-- 247
Query: 401 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG-TLHGPAI---QCCYSLLDIVH 456
R K LYSI+ KM R+ + ++YD A+RV++ K T A+ Q CY +L +VH
Sbjct: 248 GRPKHLYSIWKKMEREGKTLEQIYDLLAVRVILDPKPAPTRESQALREKQVCYHVLGLVH 307
Query: 457 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 516
LW PI G DYI PKP+GYQSLHT V +G LEVQIRT++MH AE+G+AAHWLY
Sbjct: 308 ALWQPIPGRVKDYIAVPKPNGYQSLHTTVIALEGLPLEVQIRTREMHRVAEYGIAAHWLY 367
Query: 517 K-------ETGNKLQSISSMDESDIEASSS 539
K E ++ + S+ E E SSS
Sbjct: 368 KEGLTDPEEVKRRVSWLKSIQEWQKEFSSS 397
>gi|392941128|ref|ZP_10306772.1| LOW QUALITY PROTEIN: (p)ppGpp synthetase, RelA/SpoT family
[Thermoanaerobacter siderophilus SR4]
gi|392292878|gb|EIW01322.1| LOW QUALITY PROTEIN: (p)ppGpp synthetase, RelA/SpoT family
[Thermoanaerobacter siderophilus SR4]
Length = 719
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 127/420 (30%), Positives = 194/420 (46%), Gaps = 96/420 (22%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
N E + KA FA AH GQ R +G+PY+ H I ILA L + + T+ AG+LHD
Sbjct: 18 NLELIYKAYDFAVNAHEGQMRNSGEPYIVHPIEVAYILADL-----ELDITTIAAGLLHD 72
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLH 219
V++D + + E FG E+A LV GV++L I ++ +
Sbjct: 73 VIEDTDVTYDQLMENFGKEIADLVDGVTKLGKIEY----------------KSKVEQQAE 116
Query: 220 NMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 279
NMR + A+A++ +I LA RL + L + L Q ++ +
Sbjct: 117 NMRKMLI-------AMAKDIRVILIKLADRL------HNMRTLKYLPLDKQ--KEKAEET 161
Query: 280 ASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDIL 338
+++P +R+G S+ + E H DL+E V
Sbjct: 162 LEIYAPIAHRLGISK--------------IKWELEDLCLRYLHPEEYYDLVEKVA----- 202
Query: 339 SDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVT 398
+ R++R +F+ ++ + +E L KE+ G++
Sbjct: 203 AKRKEREEFIQNI----------------------ITTIKEKL-KEM--------GIQAE 231
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+ R K YSI+ KM+ ++ ++YD A+R++V ++ CY +L IVH L
Sbjct: 232 VDGRPKHFYSIYKKMKTQNKTFEQIYDLLAVRIIVN---------TVKDCYGVLGIVHTL 282
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAHW YKE
Sbjct: 283 WKPIPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEIQIRTWEMHKTAEYGIAAHWKYKE 342
Score = 45.8 bits (107), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 710 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 769
+ E + K+ LR +L W+++L+ ++ K + D V V P G++
Sbjct: 345 TTEDEFDQKLSWLRQLLEWQKELKDAKEFMETL---KIDLFTDEV------FVFTPKGDV 395
Query: 770 MRLRSGSTAADAAMKVGLEGKLVL----VNGQLVLPNTELKDGDIVEVRV 815
+ L +GST D A + E L VNG++V N +LK+GDIVE+ V
Sbjct: 396 INLPAGSTPIDFAYSIHTEIGHRLNGAKVNGKIVPINYQLKNGDIVEILV 445
>gi|293571366|ref|ZP_06682397.1| GTP pyrophosphokinase [Enterococcus faecium E980]
gi|431738631|ref|ZP_19527574.1| RelA/SpoT family protein [Enterococcus faecium E1972]
gi|291608582|gb|EFF37873.1| GTP pyrophosphokinase [Enterococcus faecium E980]
gi|430597359|gb|ELB35162.1| RelA/SpoT family protein [Enterococcus faecium E1972]
Length = 786
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 136/417 (32%), Positives = 197/417 (47%), Gaps = 98/417 (23%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA +A AH GQFRK+G+PY+ H I ILA L K TV G LHDVV+D
Sbjct: 77 VEKACEYATAAHDGQFRKSGEPYIIHPIQVAGILADL-----KMDPHTVATGFLHDVVED 131
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L + EEFGD+VA LV GV++L I + H E+LA+ M
Sbjct: 132 TEVTLEDLREEFGDDVAMLVDGVTKLGKIK--YKSHE-----------EQLAENHRKMLL 178
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
A+AQ+ +I LA RL + LK ED R++ + +
Sbjct: 179 ----------AMAQDLRVIMVKLADRLHNMRTLKHLREDKQ---------RRIAQETLEI 219
Query: 283 WSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
++P +R+G SR I + L R + + + H++ K R
Sbjct: 220 YAPLAHRLGISR-IKWELEDTAL--RYLNPKQYYRIV--HLMQTK--------------R 260
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
+R K+++ V+D +A L G+ +
Sbjct: 261 EEREKYVNG------------TVEDIRVATEEL-------------------GIFAEIYG 289
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L +H W P
Sbjct: 290 RPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLGAIHTKWKP 340
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
+ G F DYI PK + YQSLHT V GP G+ +E+QIRTQ+MHE AE G+AAHW YKE
Sbjct: 341 MPGRFKDYIAMPKANMYQSLHTTVIGPAGNPVEIQIRTQEMHEIAEFGVAAHWAYKE 397
>gi|314991932|ref|ZP_07857387.1| GTP diphosphokinase [Enterococcus faecium TX0133B]
gi|313593516|gb|EFR72361.1| GTP diphosphokinase [Enterococcus faecium TX0133B]
Length = 737
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 137/421 (32%), Positives = 198/421 (47%), Gaps = 98/421 (23%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA +A AH GQFRK+G+PY+ H I ILA L K TV G LHDVV+D
Sbjct: 28 VEKACEYATAAHDGQFRKSGEPYIIHPIQVAGILADL-----KMDPHTVATGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L + EEFGD+VA LV GV++L I + H E+LA+ M
Sbjct: 83 TEITLEDLREEFGDDVAMLVDGVTKLGKIK--YKSHE-----------EQLAENHRKMLL 129
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
A+AQ+ +I LA RL + LK ED R++ + +
Sbjct: 130 ----------AMAQDLRVIMVKLADRLHNMRTLKHLREDKQ---------RRIAQETLEI 170
Query: 283 WSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
++P +R+G SR I + L R + + + H++ K R
Sbjct: 171 YAPLAHRLGISR-IKWELEDTAL--RYLNPKQYYRIV--HLMQTK--------------R 211
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
+R K++ + V+D IA L G+ +
Sbjct: 212 EEREKYV------------SGTVEDIRIATEEL-------------------GIFAEIYG 240
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI+ KM+ + +++YD +RV+V +I+ CY++L +H W P
Sbjct: 241 RPKHIYSIYRKMKDQKKQFNEIYDLLVIRVIVD---------SIKDCYAVLGAIHTKWKP 291
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ G F DYI PK + YQSLHT V GP G+ +E+QIRTQ+MHE AE G+AAHW YKE N
Sbjct: 292 MPGRFKDYIAMPKANMYQSLHTTVIGPAGNPVEIQIRTQEMHEIAEFGVAAHWAYKEGKN 351
Query: 522 K 522
+
Sbjct: 352 E 352
>gi|345017525|ref|YP_004819878.1| (p)ppGpp synthetase I SpoT/RelA [Thermoanaerobacter wiegelii
Rt8.B1]
gi|344032868|gb|AEM78594.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 719
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 127/420 (30%), Positives = 194/420 (46%), Gaps = 96/420 (22%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
N E + KA FA AH GQ R +G+PY+ H I ILA L + + T+ AG+LHD
Sbjct: 18 NLELIYKAYDFAVNAHEGQMRNSGEPYIVHPIEVAFILADL-----ELDITTIAAGLLHD 72
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLH 219
V++D + + E FG E+A LV GV++L I ++ +
Sbjct: 73 VIEDTDVTYDQLMENFGKEIADLVDGVTKLGKIEY----------------KSKVEQQAE 116
Query: 220 NMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 279
NMR + A+A++ +I LA RL + L + L Q ++ +
Sbjct: 117 NMRKMLI-------AMAKDIRVILIKLADRL------HNMRTLKYLPLDKQ--KEKAEET 161
Query: 280 ASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDIL 338
+++P +R+G S+ + E H DL+E V
Sbjct: 162 LEIYAPIAHRLGISK--------------IKWELEDLCLRYLHPEEYYDLVEKVA----- 202
Query: 339 SDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVT 398
+ R++R +F+ ++ + +E L KE+ G++
Sbjct: 203 AKRKEREEFIQNI----------------------ITTIKEKL-KEM--------GIQAE 231
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+ R K YSI+ KM+ ++ ++YD A+R++V ++ CY +L IVH L
Sbjct: 232 VDGRPKHFYSIYKKMKTQNKTFEQIYDLLAVRIIVN---------TVKDCYGVLGIVHTL 282
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAHW YKE
Sbjct: 283 WKPIPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEIQIRTWEMHKTAEYGIAAHWKYKE 342
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 710 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 769
+ E + K+ LR +L W+++L+ ++ K + D V V P G++
Sbjct: 345 TTEDEFDQKLSWLRQLLEWQKELKDAKEFMETL---KIDLFTDEV------FVFTPKGDV 395
Query: 770 MRLRSGSTAADAAMKVGLEGKLVL----VNGQLVLPNTELKDGDIVEVRV 815
+ L +GST D A + E L VNG++V N +LK+GDIVE+ V
Sbjct: 396 INLPAGSTPIDFAYSIHTEIGHRLNGAKVNGKIVPINYQLKNGDIVEILV 445
>gi|404413602|ref|YP_006699189.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC7179]
gi|404239301|emb|CBY60702.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC7179]
Length = 738
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 135/428 (31%), Positives = 200/428 (46%), Gaps = 97/428 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+ A FA+ +H QFRK+G+PY+ H I IL L K TV +G LHDVV+D
Sbjct: 28 VKNAYEFARDSHKEQFRKSGEPYIIHPIQVAGILVEL-----KMDPSTVASGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L +EE FG EVA LV GV++L I HEE + N R
Sbjct: 83 TPVTLADLEEVFGSEVAMLVDGVTKLGKIK--------------YKSHEE--QQAENHRK 126
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
++ A+AQ+ +I LA RL + L ++ Q R++ + ++
Sbjct: 127 MFI-------AMAQDIRVILIKLADRL------HNMRTLKHLPVEKQ--RRIANETLEIF 171
Query: 284 SP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
+P +R+G SR + + L R + + + H++ K R
Sbjct: 172 APLAHRLGISR-VKWELEDTAL--RYLNPQQYYRIV--HLMKQK--------------RD 212
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
R ++LHD V+ L L ++ +S R
Sbjct: 213 ARERYLHD------------VIDGVNENLDEL-------------------NIQADISGR 241
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L I+H W P+
Sbjct: 242 PKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLGIIHTRWKPM 292
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAHW YKE G
Sbjct: 293 PGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAHWAYKE-GKV 351
Query: 523 LQSISSMD 530
+ S +S D
Sbjct: 352 VNSKTSFD 359
>gi|158320743|ref|YP_001513250.1| (p)ppGpp synthetase I SpoT/RelA [Alkaliphilus oremlandii OhILAs]
gi|158140942|gb|ABW19254.1| (p)ppGpp synthetase I, SpoT/RelA [Alkaliphilus oremlandii OhILAs]
Length = 724
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 127/419 (30%), Positives = 194/419 (46%), Gaps = 98/419 (23%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E + KA +A++AH GQ+RK+G+ Y H + RIL L + T+VAG+LHDV+
Sbjct: 20 ELITKAFNYAEKAHQGQYRKSGEDYFIHPVEVARILIDL-----QMDASTIVAGLLHDVI 74
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNM 221
+D ++EEFG E+A LV GV++++ R++ N E A+ L M
Sbjct: 75 EDTEYGYDMVKEEFGVEIADLVEGVTKIT----------RLSFNSK---EERQAENLRKM 121
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLA 280
A+A++ +I LA RL + LK + P+ ++ +
Sbjct: 122 ----------VLAMAKDIRVILIKLADRLHNMRTLKFQ---------NPEKQKEKATETL 162
Query: 281 SMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILS 339
+++P NR+G SR + +D D DL+E V
Sbjct: 163 EIFAPIANRLGISRI------------KWELEDICLRYIDPQ--GYYDLVEKVS-----Q 203
Query: 340 DRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTL 399
R+ R F+ D+ ++ E LE +E +
Sbjct: 204 KRKDRENFISDIIET----------------------LREKLED---------FDIENEI 232
Query: 400 SSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLW 459
+ R K YSI+ KM + +++D A+RV+V +++ CY +L +VH +W
Sbjct: 233 TGRPKHFYSIYRKMTYQGKSFDEIFDFMAVRVIVN---------SVKDCYGVLGVVHTIW 283
Query: 460 IPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAHW YKE
Sbjct: 284 KPIPGRFKDYIAMPKPNMYQSLHTTVIGPQGDPFEIQIRTFEMHQIAEYGIAAHWKYKE 342
Score = 43.5 bits (101), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 15/109 (13%)
Query: 710 SMEASINNKVRLLRTMLRWEEQLRSEASLRQS-KLGGKANGNPDSVVPGEVVIVCWPNGE 768
++E + K+ LR ML WE++++ +S K+ +N V V P GE
Sbjct: 347 TVEQQNDMKLAWLRQMLEWEKEIKDPKEFMESLKIDLFSNE----------VFVFTPKGE 396
Query: 769 IMRLRSGSTAADAAMKV--GLEGKLV--LVNGQLVLPNTELKDGDIVEV 813
++ L GST D A K+ G+ K V V+G++V + +LK+G+IV++
Sbjct: 397 VVNLPIGSTPIDFAYKIHSGVGNKCVGAKVDGRIVPIDYKLKNGNIVQI 445
>gi|167037441|ref|YP_001665019.1| (p)ppGpp synthetase I SpoT/RelA [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320115854|ref|YP_004186013.1| RelA/SpoT family protein [Thermoanaerobacter brockii subsp. finnii
Ako-1]
gi|166856275|gb|ABY94683.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319928945|gb|ADV79630.1| RelA/SpoT family protein [Thermoanaerobacter brockii subsp. finnii
Ako-1]
Length = 719
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 127/420 (30%), Positives = 194/420 (46%), Gaps = 96/420 (22%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
N E + KA FA AH GQ R +G+PY+ H I ILA L + + T+ AG+LHD
Sbjct: 18 NLELIYKAYDFAVNAHEGQMRNSGEPYIVHPIEVAFILADL-----ELDITTIAAGLLHD 72
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLH 219
V++D + + E FG E+A LV GV++L I ++ +
Sbjct: 73 VIEDTDVTYDQLMENFGKEIADLVDGVTKLGKIEY----------------KSKVEQQAE 116
Query: 220 NMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 279
NMR + A+A++ +I LA RL + L + L Q ++ +
Sbjct: 117 NMRKMLI-------AMAKDIRVILIKLADRL------HNMRTLKYLPLDKQ--KEKAEET 161
Query: 280 ASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDIL 338
+++P +R+G S+ + E H DL+E V
Sbjct: 162 LEIYAPIAHRLGISK--------------IKWELEDLCLRYLHPEEYYDLVEKVA----- 202
Query: 339 SDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVT 398
+ R++R +F+ ++ + +E L KE+ G++
Sbjct: 203 AKRKEREEFIQNI----------------------ITTIKEKL-KEM--------GIQAE 231
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+ R K YSI+ KM+ ++ ++YD A+R++V ++ CY +L IVH L
Sbjct: 232 VDGRPKHFYSIYKKMKTQNKTFEQIYDLLAVRIIVN---------TVKDCYGVLGIVHTL 282
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAHW YKE
Sbjct: 283 WKPIPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEIQIRTWEMHKTAEYGIAAHWKYKE 342
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 710 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 769
+ E + K+ LR +L W+++L+ ++ K + D V V P G++
Sbjct: 345 TTEDEFDQKLSWLRQLLEWQKELKDAKEFMETL---KIDLFTDEV------FVFTPKGDV 395
Query: 770 MRLRSGSTAADAAMKVGLEGKLVL----VNGQLVLPNTELKDGDIVEVRV 815
+ L +GST D A + E L VNG++V N +LK+GDIVE+ V
Sbjct: 396 INLPAGSTPIDFAYSIHTEIGHRLNGAKVNGKIVPINYQLKNGDIVEILV 445
>gi|256752957|ref|ZP_05493784.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter ethanolicus
CCSD1]
gi|256748165|gb|EEU61242.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter ethanolicus
CCSD1]
Length = 493
Score = 173 bits (438), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 126/416 (30%), Positives = 193/416 (46%), Gaps = 96/416 (23%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ KA FA AH GQ R +G+PY+ H I ILA L + + T+ AG+LHDV++D
Sbjct: 22 IYKAYDFAVNAHDGQIRNSGEPYIIHPIEVAYILAEL-----ELDITTIAAGLLHDVIED 76
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+ G + E FG E+A LV GV++L I ++ + NMR
Sbjct: 77 TDVTYGQLLEYFGKEIADLVDGVTKLGKIEY----------------KSKVEQQAENMRK 120
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
+ A+A++ +I LA RL + L + L Q ++ + ++
Sbjct: 121 MLI-------AMAKDIRVILIKLADRL------HNMRTLKYLPLDKQ--KEKAEETLEIY 165
Query: 284 SP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
+P +R+G S+ + E H DL+E V + R+
Sbjct: 166 APIAHRLGISK--------------IKWELEDLCLRYLHPEEYYDLVEKVA-----AKRK 206
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
+R +F+ ++ + +E L KE+ G++ + R
Sbjct: 207 EREEFIQNI----------------------ITTIKEKL-KEM--------GIQAEVDGR 235
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K YSI+ KM+ ++ ++YD A+R++V ++ CY +L IVH LW PI
Sbjct: 236 PKHFYSIYKKMKTQNKTFEQIYDLLAVRIIVN---------TVKDCYGVLGIVHTLWKPI 286
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAHW YKE
Sbjct: 287 PGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEIQIRTWEMHKTAEYGIAAHWKYKE 342
Score = 47.0 bits (110), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 710 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 769
+ E + K+ LR +L W+++L+ ++ K + D V V P G++
Sbjct: 345 TTEDEFDQKLSWLRQLLEWQKELKDAKEFMETL---KIDLFTDEV------FVFTPKGDV 395
Query: 770 MRLRSGSTAADAAMKVGLEGKLVL----VNGQLVLPNTELKDGDIVEVRV 815
+ L +GST D A + E L VNG++V N +LK+GDIVE+ V
Sbjct: 396 INLPAGSTPIDFAYSIHTEIGHRLNGAKVNGKIVPINYQLKNGDIVEILV 445
>gi|331090444|ref|ZP_08339325.1| hypothetical protein HMPREF1025_02908 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336440256|ref|ZP_08619849.1| hypothetical protein HMPREF0990_02243 [Lachnospiraceae bacterium
1_1_57FAA]
gi|330401191|gb|EGG80784.1| hypothetical protein HMPREF1025_02908 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336013722|gb|EGN43596.1| hypothetical protein HMPREF0990_02243 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 767
Score = 173 bits (438), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 127/433 (29%), Positives = 207/433 (47%), Gaps = 105/433 (24%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA K AH Q RK+G+PY+ H + G ILA L + +T+VAG+LHD V+D
Sbjct: 54 IEKAYRIGKEAHRDQVRKSGEPYIIHPLWVGIILADL-----EMDKETIVAGMLHDAVED 108
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L + EFG+EVA LV GV++L +N ++L + N+R
Sbjct: 109 TDMTLDDVAGEFGEEVALLVDGVTKLGQLN---------------YSQDKLEVQAENLRK 153
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
++ A+A++ +I LA RL + L F + P ++ + ++
Sbjct: 154 MFL-------AMAKDIRVIIIKLADRL------HNMRTLEF--MTPTKQQEKARETMDIY 198
Query: 284 SP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSD-- 340
+P R+G S+ +T DD S + V ++++ D
Sbjct: 199 APIAQRLGISKI------------KTELDDLSLKYWKPEVY-----------YNLVRDLN 235
Query: 341 RRK--RTKFLHDL-AKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEV 397
RRK R +F+ + A+ S+ K A + E
Sbjct: 236 RRKTEREEFVQQIVAEVSKHMKNAHI--------------------------------EA 263
Query: 398 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 457
+ R+K +SI+ KM ++ + +VYD A+R++V +++ CY+ L ++H
Sbjct: 264 KVYGRVKHFFSIYKKMVNQNKTLDQVYDLFAVRIIV---------DSVKDCYAALGVIHE 314
Query: 458 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 517
++ PI G F DYI PKP+ YQSLHT + GP G E+QIRT++MH+ AE+G+AAHW YK
Sbjct: 315 MYTPIPGRFKDYIAMPKPNMYQSLHTTLMGPSGQPFEIQIRTEEMHKTAEYGIAAHWKYK 374
Query: 518 ETGNKLQSISSMD 530
E G+ +S+ S +
Sbjct: 375 EGGDSAKSMESQE 387
>gi|317502040|ref|ZP_07960222.1| GTP diphosphokinase [Lachnospiraceae bacterium 8_1_57FAA]
gi|316896514|gb|EFV18603.1| GTP diphosphokinase [Lachnospiraceae bacterium 8_1_57FAA]
Length = 774
Score = 173 bits (438), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 127/433 (29%), Positives = 207/433 (47%), Gaps = 105/433 (24%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA K AH Q RK+G+PY+ H + G ILA L + +T+VAG+LHD V+D
Sbjct: 61 IEKAYRIGKEAHRDQVRKSGEPYIIHPLWVGIILADL-----EMDKETIVAGMLHDAVED 115
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L + EFG+EVA LV GV++L +N ++L + N+R
Sbjct: 116 TDMTLDDVAGEFGEEVALLVDGVTKLGQLN---------------YSQDKLEVQAENLRK 160
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
++ A+A++ +I LA RL + L F + P ++ + ++
Sbjct: 161 MFL-------AMAKDIRVIIIKLADRL------HNMRTLEF--MTPTKQQEKARETMDIY 205
Query: 284 SP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSD-- 340
+P R+G S+ +T DD S + V ++++ D
Sbjct: 206 APIAQRLGISKI------------KTELDDLSLKYWKPEVY-----------YNLVRDLN 242
Query: 341 RRK--RTKFLHDL-AKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEV 397
RRK R +F+ + A+ S+ K A + E
Sbjct: 243 RRKTEREEFVQQIVAEVSKHMKNAHI--------------------------------EA 270
Query: 398 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 457
+ R+K +SI+ KM ++ + +VYD A+R++V +++ CY+ L ++H
Sbjct: 271 KVYGRVKHFFSIYKKMVNQNKTLDQVYDLFAVRIIV---------DSVKDCYAALGVIHE 321
Query: 458 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 517
++ PI G F DYI PKP+ YQSLHT + GP G E+QIRT++MH+ AE+G+AAHW YK
Sbjct: 322 MYTPIPGRFKDYIAMPKPNMYQSLHTTLMGPSGQPFEIQIRTEEMHKTAEYGIAAHWKYK 381
Query: 518 ETGNKLQSISSMD 530
E G+ +S+ S +
Sbjct: 382 EGGDSAKSMESQE 394
>gi|116872952|ref|YP_849733.1| GTP pyrophosphokinase [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116741830|emb|CAK20954.1| GTP pyrophosphokinase [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 738
Score = 173 bits (438), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 135/428 (31%), Positives = 200/428 (46%), Gaps = 97/428 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA+ +H QFRK+G+PY+ H I IL L K TV +G LHDVV+D
Sbjct: 28 VKKAYEFARDSHKEQFRKSGEPYIIHPIQVAGILVEL-----KMDPSTVASGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L +EE F EVA LV GV++L I HEE + N R
Sbjct: 83 TPVTLADLEEAFDSEVAMLVDGVTKLGKIK--------------YKSHEE--QQAENHRK 126
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
++ A+AQ+ +I LA RL + L ++ Q R++ + ++
Sbjct: 127 MFI-------AMAQDIRVILIKLADRL------HNMRTLKHLPVEKQ--RRIANETLEIF 171
Query: 284 SP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
+P +R+G SR + + L R + + + H++ K R
Sbjct: 172 APLAHRLGISR-VKWELEDTAL--RYLNPQQYYRIV--HLMKQK--------------RD 212
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
R ++LHD V+ L L ++ +S R
Sbjct: 213 ARERYLHD------------VIDGVNENLDEL-------------------NIQADISGR 241
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L I+H W P+
Sbjct: 242 PKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLGIIHTRWKPM 292
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAHW YKE G
Sbjct: 293 PGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAHWAYKE-GKV 351
Query: 523 LQSISSMD 530
+ S +S D
Sbjct: 352 VNSKTSFD 359
>gi|157741797|gb|ABV69554.1| RelA/SpoT-like protein [Ipomoea nil]
Length = 727
Score = 173 bits (438), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 146/433 (33%), Positives = 206/433 (47%), Gaps = 94/433 (21%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF+D+ V KA A+ AH GQ R +GDPYL HC+ T +LA + +S V AG
Sbjct: 221 HKIFHDDLVVKAFCEAENAHRGQMRASGDPYLQHCVETAVLLATIGANS-----TVVAAG 275
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
+LHD +DD + I FG VA LV GVS+LS++++L R + N A
Sbjct: 276 LLHDTLDDTFVTYNYISLSFGAGVADLVEGVSKLSHLSKLARENDTANKIVE-------A 328
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRK 274
DRLH M L A ARAV LI LA RL + L + +++ Q F K
Sbjct: 329 DRLHTM----FLAMADARAV-----LI--KLADRLHNMMTLDS------LPMIKQQRFAK 371
Query: 275 MRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVV 333
+ +++P NR+G S + K+ LE +
Sbjct: 372 ---ETLEIFAPLANRLGIS-------------------------------TWKEQLENLC 397
Query: 334 PFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIP 393
K+L+ + + E K D + +++ E AL+ E S SY
Sbjct: 398 -----------FKYLNPV-QHKELTSKLVTSFDEAMVTSAVEKLERALKDE---SISY-- 440
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
+LS R KSLYSI KM +K + + +++D LR++V ++ CY
Sbjct: 441 ---HSLSGRHKSLYSIHRKMSKKKLNMDEIHDIHGLRIIVENEED---------CYKAAT 488
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH+LW + G+F DYI++PK +GYQSLHT V LEVQIRT++MH AE G AAH
Sbjct: 489 VVHQLWPEVPGKFKDYILHPKFNGYQSLHTVVTREGMVPLEVQIRTKEMHLQAEFGFAAH 548
Query: 514 WLYKETGNKLQSI 526
W YKE K S
Sbjct: 549 WRYKEGDCKHSSF 561
>gi|331090638|ref|ZP_08339489.1| hypothetical protein HMPREF9477_00132 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330401078|gb|EGG80673.1| hypothetical protein HMPREF9477_00132 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 766
Score = 172 bits (437), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 132/461 (28%), Positives = 213/461 (46%), Gaps = 103/461 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA AK AH GQ RK+G+ Y+ H G ILA L +T+ AGILHDVV+D
Sbjct: 54 IEKAYRIAKEAHEGQVRKSGEAYIIHPTWVGLILADLELDK-----ETIAAGILHDVVED 108
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+ I EEFG EVA LV GV++L Q + ++L + N+R
Sbjct: 109 TVMTEEEITEEFGSEVALLVDGVTKLG---------------QLSYSADKLEVQAENLRK 153
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
++ A+A++ +I LA RL + L F ++P+ ++ + ++
Sbjct: 154 MFL-------AMAKDIRVILIKLADRL------HNMRTLQF--MRPEKQKEKARETMDIY 198
Query: 284 SP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
+P R+G S+ +T DD + S D+ +V I + +
Sbjct: 199 APIAQRLGISKI------------KTELDDLALK------YSQPDVFYDLVN-QINARKT 239
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
+R +F+ + + K ++ + R
Sbjct: 240 EREEFVQQIVEEVSTHMKN-------------------------------ANIKAEVYGR 268
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
+K +SI+ KM +D + ++YD A+R++V +++ CY+ L +H ++ PI
Sbjct: 269 VKHFFSIYKKMVNQDKTVDQIYDLFAIRIIV---------DSVKDCYAALGAIHEMYTPI 319
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
G F DYI PKP+ YQSLHT + GP G E+QIRT +MH+ AE+G+AAHW YKE+G
Sbjct: 320 PGRFKDYIAMPKPNMYQSLHTTLMGPAGQPFEIQIRTVEMHKTAEYGIAAHWKYKESGGS 379
Query: 523 LQSISSMDESDIEASSSL---SKDTDDHNPL-----DTDLF 555
+S+++ E + + +DTD+ L D DLF
Sbjct: 380 EKSVATRAEEKLSWLRQILEWQQDTDNREFLSLLKGDLDLF 420
>gi|260891210|ref|ZP_05902473.1| GTP diphosphokinase [Leptotrichia hofstadii F0254]
gi|260859237|gb|EEX73737.1| GTP diphosphokinase [Leptotrichia hofstadii F0254]
Length = 389
Score = 172 bits (437), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 132/433 (30%), Positives = 206/433 (47%), Gaps = 102/433 (23%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
N ++++ A A +H GQ RK+G+ Y+ H + ILA + K DT+VAG+LHD
Sbjct: 54 NMDKIEHAFILAYESHIGQKRKSGEDYILHPVEVAEILADM-----KMDTDTIVAGLLHD 108
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLH 219
VV+D L IE+ FG +V KLV GV++ LR R + + +L
Sbjct: 109 VVEDTLIVLEDIEDNFGKDVKKLVDGVTK-------LRNLPRTD-----------SKKLE 150
Query: 220 NMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRAD 278
N R + A++++ ++ LA RL + LK ++P+ ++ +
Sbjct: 151 NKRKMVI-------AMSEDIRVVIIKLADRLHNMRTLK---------YMKPEKQQEKSKE 194
Query: 279 LASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFT-TFDEHVLSMKDLLEAVVPFD 336
+++P +R+G +R + +D SF + +K+L+
Sbjct: 195 TIEIYAPIAHRIGMARI------------KWELEDISFRFLYPNDYYEIKELVN------ 236
Query: 337 ILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGME 396
+ RR+R ++ AK ++ I L + I G E
Sbjct: 237 --TKRREREEYT------------AKFIEKIKIELKK----------------NNIKG-E 265
Query: 397 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 456
VT R K LYSI+ KM K +YD A+R++V KN CY++L I+H
Sbjct: 266 VT--GRPKHLYSIYRKMNEKQKRFMDLYDLIAIRIIVEKKNE---------CYNVLGIIH 314
Query: 457 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 516
L+IP+ F DY+ PKP+GYQS+HT V+GP+ +E+QIRTQ+MHE AE G+AAHW Y
Sbjct: 315 DLFIPVFDRFKDYVAQPKPNGYQSIHTTVKGPNNQNVEIQIRTQEMHEIAEEGVAAHWKY 374
Query: 517 KETGNKLQSISSM 529
KE L+ + M
Sbjct: 375 KEKNQNLKMKNFM 387
>gi|302670706|ref|YP_003830666.1| RelA/SpoT family protein [Butyrivibrio proteoclasticus B316]
gi|302395179|gb|ADL34084.1| RelA/SpoT family protein [Butyrivibrio proteoclasticus B316]
Length = 760
Score = 172 bits (436), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 125/423 (29%), Positives = 209/423 (49%), Gaps = 96/423 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA A AH GQ RK+G+PY+ H + ILA L + +T+ AG+LHDVV+D
Sbjct: 42 IEKAYNQAAEAHQGQLRKSGEPYIIHPLCVAIILADL-----EMDKETIAAGLLHDVVED 96
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+ I+E FG +VA LV GV++L+ + +++ + E++ + N+R
Sbjct: 97 TICTKEEIQESFGADVALLVDGVTKLTAL--------QLSTDNTNKTQEQIDMQAQNLRK 148
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
++ A+A++ +I LA RL A + P+ +++ + ++
Sbjct: 149 MFL-------AMAKDIRVILIKLADRLHNMR--------TLAHMPPEKQQRIAQETLDIY 193
Query: 284 SP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSD-- 340
SP R+G SR + DD LS+K L+ V +D++
Sbjct: 194 SPIAGRLGISRI------------KVELDD----------LSLK-YLKPDVYYDLVDKVS 230
Query: 341 --RRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVT 398
+ +R K++ D+ ++ V+DA I T+ G+E
Sbjct: 231 IRKSEREKYVEDICEN---------VRDA-------------------IKTA---GIEGE 259
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R+K +SI+ KMR ++ + ++YD A+R++V ++ CY+ L ++H +
Sbjct: 260 VNGRVKHFFSIYKKMRNQNKTLDQIYDLFAIRIIVA---------TVKDCYAALGVIHEM 310
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
+ PI G F DYI PKP+ YQSLHT + G G E+QIRT MH+ AE+G+AAHW YKE
Sbjct: 311 YKPIPGRFKDYIAMPKPNMYQSLHTTLIGQTGQPFEIQIRTYDMHKAAEYGIAAHWKYKE 370
Query: 519 TGN 521
T +
Sbjct: 371 TSD 373
>gi|433449313|ref|ZP_20412177.1| GTP pyrophosphokinase [Weissella ceti NC36]
gi|429538827|gb|ELA06865.1| GTP pyrophosphokinase [Weissella ceti NC36]
Length = 741
Score = 172 bits (436), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 139/449 (30%), Positives = 213/449 (47%), Gaps = 99/449 (22%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
+V KA AFA+ HH Q R++G+PY+ H I ILA L DTVVAG LHDV++
Sbjct: 27 KVDKAYAFAENLHHDQMRQSGEPYIMHPIQVAGILADL-----NMDPDTVVAGYLHDVIE 81
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMR 222
D +L + E FG VA +V GVS+LS I R E+LA+ N R
Sbjct: 82 DTDATLEELTELFGANVAIIVDGVSKLSKIEYKSSR-------------EQLAE---NHR 125
Query: 223 TIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLAS 281
+ A++++ +I LA RL + L A L+P+ R++ ++
Sbjct: 126 KLLL-------AMSKDIRVIIVKLADRLHNMRTLDA---------LKPEKQRRIASETLE 169
Query: 282 MWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSD 340
+++P +R+G ++++K LE LS
Sbjct: 170 IYAPLADRLG-------------------------------IMTIKWELED------LSL 192
Query: 341 RRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEK-ELLISTSYIPGMEVTL 399
R HD+AK + +++ + L EEA+++ E +IS+ + +V
Sbjct: 193 RYLDPDAYHDIAKKMKMRRQER-----------LNFVEEAVDEIENIISSLNLEHTDV-- 239
Query: 400 SSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLW 459
R K +YS++ KM K ++D A+RVVV ++ Y++L ++H W
Sbjct: 240 YGRPKHIYSVYRKMVDKHKDFEDIFDLSAIRVVVD---------SMPETYAVLGMIHSKW 290
Query: 460 IPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET 519
P+ G F DYI PK +GYQSLHT V GP G +EVQIRT +MHE AE G+AAHW YKE
Sbjct: 291 TPMPGRFKDYIALPKNNGYQSLHTTVVGPGGRPMEVQIRTHEMHEVAEFGVAAHWAYKEG 350
Query: 520 GNKLQSISSMDESDIEASSSLSKDTDDHN 548
+ + + D+ + ++ D H+
Sbjct: 351 NHDGADVQNADQQKLNVIQTILDLNDVHD 379
>gi|51893575|ref|YP_076266.1| GTP pyrophosphokinase [Symbiobacterium thermophilum IAM 14863]
gi|51857264|dbj|BAD41422.1| GTP pyrophosphokinase [Symbiobacterium thermophilum IAM 14863]
Length = 735
Score = 172 bits (436), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 131/418 (31%), Positives = 196/418 (46%), Gaps = 100/418 (23%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ A AFAK+AH GQ R++G+PY+TH I I+A L +++ A +LHDV++D
Sbjct: 26 IDNAFAFAKQAHEGQCRRSGEPYITHPIAVAEIVASLELDE-----ESIAAALLHDVLED 80
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+EE FG EVA LV GVS+L + R ++ N+R
Sbjct: 81 CGVKYEELEERFGKEVATLVDGVSKLDRLQFTSRDEAQVE----------------NLRK 124
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
++ A+A++ +I LA RL + LK + D + Q + +
Sbjct: 125 MFL-------AMAKDLRVILIKLADRLHNMRTLKHQPSDAQVRIAQ---------ETMDI 168
Query: 283 WSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILS-D 340
++P +R+G S E ++DL F IL D
Sbjct: 169 YAPLAHRLGLS---------------------------EIKWELEDL-----AFRILEPD 196
Query: 341 RRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLS 400
R + +L + + Q++ + QD L E LEKE G++ +S
Sbjct: 197 RYQEMAYL----VARKRQERMAITQDLMDQL------REVLEKE---------GIQAEIS 237
Query: 401 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 460
R K YSI+ KM R+ I ++YD A+R++V + ++ CY++L I+H W
Sbjct: 238 GRPKHFYSIYKKMYRQGKDISQIYDLIAIRIIVEE---------VKDCYAVLGIIHSHWK 288
Query: 461 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
P+ F DYI PKP+ YQSLHT V GP G E+QIRT++MH AE G+AAHW YKE
Sbjct: 289 PLPLRFKDYIATPKPNMYQSLHTTVIGPHGEPFEIQIRTREMHRTAEFGVAAHWSYKE 346
Score = 39.7 bits (91), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 712 EASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMR 771
+ + K++ LR++L W +++R +S K + D V V P G +
Sbjct: 350 DKEFDRKLQWLRSLLEWHQEIRDAREFVESV---KVDIFSDQV------FVFSPKGHVFS 400
Query: 772 LRSGSTAADAAMKV----GLEGKLVLVNGQLVLPNTELKDGDIVEV 813
L +G T D A V G VNG++ +T LK+GD+VE+
Sbjct: 401 LPAGGTPLDFAFAVHSDIGYRCVGAKVNGKIAPLDTALKNGDVVEI 446
>gi|238922253|ref|YP_002935767.1| GTP pyrophosphokinase [Eubacterium eligens ATCC 27750]
gi|238873925|gb|ACR73633.1| GTP pyrophosphokinase [Eubacterium eligens ATCC 27750]
Length = 770
Score = 172 bits (436), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 205/429 (47%), Gaps = 95/429 (22%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + ++KA A++AH GQFRK+G+PY+ H + ILA L + ++++AG
Sbjct: 50 HPSTDLSDIEKAYETARKAHEGQFRKSGEPYIIHPLCVAIILAEL-----ELDKESIIAG 104
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
+LHDVV+D + + +EFGDEVA LV GV++L+ QL +H +I V
Sbjct: 105 LLHDVVEDTVMTSEDVAKEFGDEVALLVDGVTKLT---QLNYQHDKIEV----------- 150
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
+ N+R ++ A+A++ +I LA RL M
Sbjct: 151 -QAENLRKMFL-------AMAKDIRVILIKLADRL----------------------HNM 180
Query: 276 RADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPF 335
R SP ++ SR I + P+ R D LSMK L+
Sbjct: 181 RT--MQYQSPAKQIEKSRETMEIYA--PIAHRLGISKIKVELDD---LSMKYLMP----- 228
Query: 336 DILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGM 395
D+ +D ++ +L + ++++ G+ +++ G+
Sbjct: 229 DVYNDLVEQV----NLNRPGREAFIKSIIKEVGMHISN-------------------AGI 265
Query: 396 EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIV 455
E + R+K +SI+ KM ++ + ++YD A+R+ V ++ CY+ L ++
Sbjct: 266 EAEIDGRVKHFFSIYRKMVNQNKTLDQIYDIFAVRIKVD---------TVKDCYAALGVI 316
Query: 456 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 515
H ++ PI G F DYI PKP+ YQSLHT + +G E+QIRT +MH+ AE+G+AAHW
Sbjct: 317 HEMYKPIPGRFKDYIAMPKPNNYQSLHTTLIASNGQPFEIQIRTYEMHKIAEYGIAAHWK 376
Query: 516 YKE--TGNK 522
YKE TG K
Sbjct: 377 YKEGKTGEK 385
>gi|341821272|emb|CCC57628.1| GTP diphosphokinase [Weissella thailandensis fsh4-2]
Length = 746
Score = 172 bits (436), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 143/428 (33%), Positives = 203/428 (47%), Gaps = 101/428 (23%)
Query: 99 FNDEQVQK---AIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
NDE V+K A FA H Q RK+G+PY+ H I ILA L DTVVAG
Sbjct: 23 MNDEHVKKVDKAYQFAFHLHQEQKRKSGEPYIIHPIQVAGILAELHMDP-----DTVVAG 77
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
LHDVV+D +L +E+ FG +VA +V GVS+LS I R E+LA
Sbjct: 78 YLHDVVEDTTATLADVEQAFGHDVAVIVDGVSKLSRIKYKSSR-------------EQLA 124
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRK 274
+ N R + A++ + +I LA RL + L A L+ + R+
Sbjct: 125 E---NHRKLLL-------AMSHDIRVIIVKLADRLHNMRTLSA---------LREEKQRR 165
Query: 275 MRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVV 333
+ A+ +++P +R+G I TI ++D+ +
Sbjct: 166 IAAETLEIYAPLADRLG----IMTIK-----------------------WELEDMALRYL 198
Query: 334 PFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIP 393
FD HD+AKS +++ + L +EA++ E+ S + +
Sbjct: 199 NFDAY----------HDIAKSMNLRRQER-----------LEIVDEAVD-EIKHSITDLH 236
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
+ R K +YSI+ KM K+ ++YD A+RV+V I Y++L
Sbjct: 237 LANTEVYGRPKHIYSIYRKMVDKNKRFEEIYDLLAIRVLVD---------TIPETYAVLG 287
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+H W P+ G F DYI PK +GYQSLHT+V GP G LEVQIRT KMHE AE+G+AAH
Sbjct: 288 AIHARWTPMPGRFKDYIALPKANGYQSLHTSVIGPGGRPLEVQIRTYKMHEIAEYGIAAH 347
Query: 514 WLYKETGN 521
W YKE GN
Sbjct: 348 WAYKE-GN 354
>gi|14325225|dbj|BAB60670.1| Rel [Listeria monocytogenes]
Length = 738
Score = 172 bits (436), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 135/428 (31%), Positives = 200/428 (46%), Gaps = 97/428 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA+ + QFRK+G+PY+ H I IL L K TV +G LHDVV+D
Sbjct: 28 VKKAYEFARDSRKEQFRKSGEPYIIHPIQVAGILVEL-----KMDPSTVASGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L +EE FG EVA LV GV++L I HEE + N R
Sbjct: 83 TPVTLADLEEVFGSEVAMLVDGVTKLGKIK--------------YKSHEE--QQAENHRK 126
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
++ A+AQ+ +I LA RL + L ++ Q R++ + ++
Sbjct: 127 MFI-------AMAQDIRVILIKLADRL------HNMRTLKHLPVEKQ--RRIANETLEIF 171
Query: 284 SP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
+P +R+G SR + + L R + + + H++ K R
Sbjct: 172 APLAHRLGISR-VKWELEDTAL--RYLNPQQYYRIV--HLMKQK--------------RD 212
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
R ++LHD V+ L L ++ +S R
Sbjct: 213 ARERYLHD------------VIDGVNENLDEL-------------------NIQADISGR 241
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L I+H W P+
Sbjct: 242 PKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLGIIHTRWKPM 292
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAHW YKE G
Sbjct: 293 PGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAHWAYKE-GKV 351
Query: 523 LQSISSMD 530
+ S +S D
Sbjct: 352 VNSKTSFD 359
>gi|260437936|ref|ZP_05791752.1| GTP diphosphokinase [Butyrivibrio crossotus DSM 2876]
gi|292809687|gb|EFF68892.1| GTP diphosphokinase [Butyrivibrio crossotus DSM 2876]
Length = 762
Score = 172 bits (435), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 127/416 (30%), Positives = 197/416 (47%), Gaps = 93/416 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA A +AH GQ RK+G+PY+ H + ILA L + +T++AGILHDV++D
Sbjct: 48 IEKAYKVADKAHSGQKRKSGEPYIIHPLCVAIILAQL-----ELDKETIIAGILHDVIED 102
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+ I EFG+EVA LV GV++L+ +N H+++ + N+R
Sbjct: 103 TEVTYEDISREFGEEVALLVDGVTKLTQLN---------------YEHDKIEIQAENLRK 147
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
++ A+A++ +I LA RL MR
Sbjct: 148 MFL-------AMAKDIRVILIKLADRL----------------------HNMRT--MQYQ 176
Query: 284 SPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRK 343
P ++ SR I S P+ +R + + + DL + D+
Sbjct: 177 KPEKQIEKSRETMEIYS--PIAQRLG--------ISKIKVELDDLSLMYLQPDVYH---- 222
Query: 344 RTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRL 403
K HDL EA++ + +VA E EK +ST+ G+ T+ R+
Sbjct: 223 --KLEHDLTLGKEARENF---------VKEIVA--EVKEK---LSTT---GINYTIDGRV 263
Query: 404 KSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPID 463
K +SI+ KM +D + ++YD A+R++V I+ CY++L ++H ++ PI
Sbjct: 264 KHFFSIYKKMVNQDKTLDQIYDLFAVRIIVD---------TIKDCYAVLGLIHEMYKPIP 314
Query: 464 GEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET 519
G F DYI PKP+ YQSLHT + G E+QIRT +MH AE+G+AAHW YKE
Sbjct: 315 GRFKDYIAMPKPNMYQSLHTTLISQTGQPFEIQIRTYEMHRTAEYGIAAHWKYKEN 370
>gi|255280796|ref|ZP_05345351.1| GTP diphosphokinase [Bryantella formatexigens DSM 14469]
gi|255268733|gb|EET61938.1| RelA/SpoT family protein [Marvinbryantia formatexigens DSM 14469]
Length = 774
Score = 172 bits (435), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 135/468 (28%), Positives = 218/468 (46%), Gaps = 104/468 (22%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + ++KA A AH GQ RK+G+PY+ H + ILA L + +T+ AG
Sbjct: 49 HPSADTSMIEKAYKIASEAHKGQKRKSGEPYIIHPLCVAIILADL-----EMDKETITAG 103
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
+LHDVV+D + I +EFG++V +LV GV++L QL +I V
Sbjct: 104 LLHDVVEDTVMTSEEIRQEFGEDVEQLVDGVTKLG---QLSYSADKIEV----------- 149
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRK 274
+ N+R ++ A+A++ +I LA RL + LK + P+ ++
Sbjct: 150 -QAENLRKMFL-------AMAKDIRVILIKLADRLHNMRTLK---------YMSPEKQKE 192
Query: 275 MRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVV 333
+ +++P R+G S+ + DD S V DL+E V
Sbjct: 193 KARETMDIYAPIAQRLGISKI------------KVELDDLSLKYLQPDVYY--DLVEKVA 238
Query: 334 PFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIP 393
+ +R KF+ + + K ++DAGI
Sbjct: 239 -----LRKTEREKFVQGIVDEVK-----KHIEDAGI------------------------ 264
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
+ R+K +SI+ KM +D I ++YD A+R++V ++ CY+ L
Sbjct: 265 --RAQVDGRVKHFFSIYKKMVNQDKTIDQIYDLFAVRIIVD---------TVKDCYAALG 313
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
++H ++ PI G F DYI PKP+ YQSLHT + GP+G+ E+QIRT +MH+ AE+G+AAH
Sbjct: 314 VIHEMYTPIPGRFKDYIAMPKPNMYQSLHTTLIGPNGTPFEIQIRTFEMHKTAEYGIAAH 373
Query: 514 WLYKETGNKLQSISSMDESD-------IEASSSLSKDTDDHNPLDTDL 554
W YKE + + SS +E +E +S + + N L +DL
Sbjct: 374 WKYKEQSDGKKPDSSREEEKMTWLRQILEWQRDMSDNHEFLNLLKSDL 421
>gi|254479350|ref|ZP_05092687.1| RelA/SpoT family protein [Carboxydibrachium pacificum DSM 12653]
gi|214034716|gb|EEB75453.1| RelA/SpoT family protein [Carboxydibrachium pacificum DSM 12653]
Length = 720
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 125/421 (29%), Positives = 194/421 (46%), Gaps = 98/421 (23%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
N + + KA FA +AH GQ R +G+PY+ H + ILA L + + T+ AG+LHD
Sbjct: 20 NLDLLYKAYNFAVKAHEGQVRNSGEPYIVHPVEVAYILADL-----ELDLTTIAAGLLHD 74
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLH 219
V++D + + EEFG E+A LV GV++L I ++ +
Sbjct: 75 VIEDTGVTYDQLMEEFGKEIADLVDGVTKLGKIEY----------------KSKVEQQAE 118
Query: 220 NMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRAD 278
NMR + A+A++ +I LA RL + LK L P ++ +
Sbjct: 119 NMRKMLI-------AMAKDIRVILIKLADRLHNMRTLK---------YLPPDKQKEKAEE 162
Query: 279 LASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDI 337
+++P +R+G S+ + E H DL+E V
Sbjct: 163 TLEIYAPIAHRLGISK--------------IKWELEDLCLRYLHPEEYYDLVEKVA---- 204
Query: 338 LSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEV 397
+ R++R +F+ ++ + ++ L++ G+
Sbjct: 205 -AKRKEREEFIQNI----------------------IATIKQKLDE---------MGIPA 232
Query: 398 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 457
+ R K YSI+ KM+ ++ ++YD A+R++V ++ CY +L IVH
Sbjct: 233 EVDGRPKHFYSIYKKMKTQNKTFEEIYDLLAIRIIVN---------TVKDCYGVLGIVHT 283
Query: 458 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 517
LW PI G F DYI PKP+ YQSLHT V GP G EVQIRT +MH+ AE+G+AAHW YK
Sbjct: 284 LWKPIPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEVQIRTWEMHKTAEYGIAAHWRYK 343
Query: 518 E 518
E
Sbjct: 344 E 344
Score = 43.1 bits (100), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 710 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 769
+ E + K+ LR +L W+++L+ ++ K + D V V P G++
Sbjct: 347 TTEDEFDKKLVWLRQLLEWQKELKDPKEFMETL---KIDLFTDEV------FVFTPKGDV 397
Query: 770 MRLRSGSTAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 815
+ L +GST D A ++G VNG++V N +LK GDIVE+ V
Sbjct: 398 ISLPAGSTPIDFAYSIHTEIGHRMNGAKVNGRIVPINYQLKTGDIVEILV 447
>gi|312621838|ref|YP_004023451.1| (p)ppgpp synthetase i, spot/rela [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202305|gb|ADQ45632.1| (p)ppGpp synthetase I, SpoT/RelA [Caldicellulosiruptor
kronotskyensis 2002]
Length = 726
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 137/435 (31%), Positives = 203/435 (46%), Gaps = 108/435 (24%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAML---IPSSGKRAVDTVVAGILHDV 160
++KA FA++ H GQ R +G+PY+ H + ILA L IPS +VAG+LHDV
Sbjct: 28 IKKAFEFAQKHHDGQSRNSGEPYILHPLEVALILADLELDIPS--------IVAGLLHDV 79
Query: 161 VDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHN 220
V+D SL +E EFG E+A+LV GV++L + + R++ N
Sbjct: 80 VEDTSASLEDVEREFGKEIAELVDGVTKLGKLEFTSKLERQV----------------EN 123
Query: 221 MRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADL 279
R + A+A++ +I LA RL + LK L P+ R+ +
Sbjct: 124 YRKMLI-------AMAKDIRVILIKLADRLHNMRTLK---------YLPPEKQRQKAQET 167
Query: 280 ASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDIL 338
+++P +R+G S+ + +D S D DL+E +
Sbjct: 168 IDIYAPLAHRLGISKI------------KWELEDLSLRYLDPE--GYYDLVEKIA----- 208
Query: 339 SDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVT 398
R +R +++ + I+L S E L KE I I G
Sbjct: 209 KKRVEREEYIKRI-----------------ISLIS-----EKL-KEANIEVGQIDG---- 241
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
R K YSI+ KM+ + + ++YD A+R++V +++ CY +L I+H L
Sbjct: 242 ---RPKHFYSIYRKMKEQGKTLEEIYDLFAIRIIVN---------SVKDCYGVLGIIHTL 289
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
+ P+ G F DYI PKP+ YQSLHT V GP+G EVQIRT MH AE+G+AAHW YKE
Sbjct: 290 FKPMPGRFKDYIAMPKPNMYQSLHTTVIGPEGEPFEVQIRTFDMHRTAEYGIAAHWKYKE 349
Query: 519 TGNKLQSISSMDESD 533
I S DE +
Sbjct: 350 G-----RIKSTDEDE 359
Score = 44.7 bits (104), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 716 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 775
+ K LR +L W+++L+ +S K N D V V P G+++ L G
Sbjct: 358 DEKFAWLRELLEWQKELKDAKEFMESL---KINLFSDEV------FVFTPKGDVISLPQG 408
Query: 776 STAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
ST D A ++G + VNG+LV + ELK+GDIVE+
Sbjct: 409 STPIDFAYAIHSEIGNKMAGAKVNGKLVPIDYELKNGDIVEI 450
>gi|344996822|ref|YP_004799165.1| (p)ppGpp synthetase I SpoT/RelA [Caldicellulosiruptor lactoaceticus
6A]
gi|343965041|gb|AEM74188.1| (p)ppGpp synthetase I, SpoT/RelA [Caldicellulosiruptor
lactoaceticus 6A]
Length = 726
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 135/432 (31%), Positives = 202/432 (46%), Gaps = 102/432 (23%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA FA++ H GQ R +G+PY+ H + ILA L + + ++VAG+LHDVV+D
Sbjct: 28 IKKAFEFAQKYHDGQVRSSGEPYIVHPLEVALILADL-----ELDIASIVAGLLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
SL +E EFG E+A+LV GV++L + + R+ N R
Sbjct: 83 TSASLEDVEREFGKEIAELVDGVTKLGKLEFTSKLERQ----------------AENYRK 126
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
+ A+A++ +I LA RL + LK L P+ R+ + +
Sbjct: 127 MLI-------AMAKDIRVILIKLADRLHNMRTLK---------YLPPEKQRQKAQETIDI 170
Query: 283 WSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
++P +R+G S+ + +D S D DL+E I R
Sbjct: 171 YAPLAHRLGISKI------------KWELEDLSLRYLDPE--GYYDLVEK-----IAKKR 211
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
+R +++ + I+L S E L KE I I G
Sbjct: 212 VEREEYIKKI-----------------ISLIS-----EKL-KEANIEVGQIDG------- 241
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K YSI+ KM+ + + ++YD A+R++V +++ CY +L I+H L+ P
Sbjct: 242 RPKHFYSIYRKMKEQGKTLEEIYDLFAIRIIVN---------SVKDCYGVLGIIHTLFKP 292
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ G F DYI PKP+ YQSLHT V GP+G EVQIRT MH AE+G+AAHW YKE
Sbjct: 293 MPGRFKDYIAMPKPNMYQSLHTTVIGPEGEPFEVQIRTFDMHRTAEYGIAAHWKYKEG-- 350
Query: 522 KLQSISSMDESD 533
I S DE +
Sbjct: 351 ---RIKSTDEDE 359
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 716 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 775
+ K LR +L W+++L+ +S K N D V V P G+++ L G
Sbjct: 358 DEKFAWLRELLEWQKELKDAKEFMESL---KINLFSDEV------FVFTPKGDVISLPQG 408
Query: 776 STAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
ST D A ++G + VNG+LV + ELK+GDIVE+
Sbjct: 409 STPIDFAYAIHSEIGNKMAGAKVNGKLVPIDYELKNGDIVEI 450
>gi|312792967|ref|YP_004025890.1| (p)ppgpp synthetase i, spot/rela [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180107|gb|ADQ40277.1| (p)ppGpp synthetase I, SpoT/RelA [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 726
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 136/432 (31%), Positives = 200/432 (46%), Gaps = 102/432 (23%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA FA++ H GQ R +G+PY+ H + ILA L + + ++VAG+LHDVV+D
Sbjct: 28 IKKAFEFAQKYHDGQVRSSGEPYIVHPLEVALILADL-----ELDIASIVAGLLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
SL +E EFG E+A+LV GV++ LG E +L
Sbjct: 83 TSASLEDVEREFGKEIAELVDGVTK--------------------LGKLEFTSKLERQAE 122
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
Y A+A++ +I LA RL + LK L P+ R+ + +
Sbjct: 123 NYR---KMLIAMAKDIRVILIKLADRLHNMRTLK---------YLPPEKQRQKAQETIDI 170
Query: 283 WSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
++P +R+G S+ + +D S D DL+E I R
Sbjct: 171 YAPLAHRLGISKI------------KWELEDLSLRYLDPE--GYYDLVEK-----IAKKR 211
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
+R +++ + I+L S E L KE I I G
Sbjct: 212 VEREEYIKKI-----------------ISLIS-----EKL-KEANIEVGQIDG------- 241
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K YSI+ KM+ + + ++YD A+R++V +++ CY +L I+H L+ P
Sbjct: 242 RPKHFYSIYRKMKEQGKTLEEIYDLFAIRIIVN---------SVKDCYGVLGIIHTLFKP 292
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ G F DYI PKP+ YQSLHT V GP+G EVQIRT MH AE+G+AAHW YKE
Sbjct: 293 MPGRFKDYIAMPKPNMYQSLHTTVIGPEGEPFEVQIRTFDMHRTAEYGIAAHWKYKEG-- 350
Query: 522 KLQSISSMDESD 533
I S DE +
Sbjct: 351 ---RIKSTDEDE 359
Score = 44.7 bits (104), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 716 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 775
+ K LR +L W+++L+ +S K N D V V P G+++ L G
Sbjct: 358 DEKFAWLRELLEWQKELKDAKEFMESL---KINLFSDEV------FVFTPKGDVISLPQG 408
Query: 776 STAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
ST D A ++G + VNG+LV + ELK+GDIVE+
Sbjct: 409 STPIDFAYAIHSEIGNKMAGAKVNGKLVPIDYELKNGDIVEI 450
>gi|302872388|ref|YP_003841024.1| (p)ppGpp synthetase I SpoT/RelA [Caldicellulosiruptor obsidiansis
OB47]
gi|302575247|gb|ADL43038.1| (p)ppGpp synthetase I, SpoT/RelA [Caldicellulosiruptor obsidiansis
OB47]
Length = 722
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 137/432 (31%), Positives = 200/432 (46%), Gaps = 102/432 (23%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA FA++ H GQ R +G+PY+ H + ILA L + + ++VAG+LHDVV+D
Sbjct: 24 IKKAFEFAQKYHEGQARSSGEPYIVHPLEVALILADL-----ELDIASIVAGLLHDVVED 78
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
SL IE EFG E+A+LV GV++ LG E +L
Sbjct: 79 TSASLEDIEREFGKEIAELVDGVTK--------------------LGKLEFTSKLERQAE 118
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
Y A+A++ +I LA RL + LK L P+ R+ + +
Sbjct: 119 NYR---KMLIAMAKDIRVILIKLADRLHNMRTLK---------YLPPEKQRQKAQETIDI 166
Query: 283 WSPR-NRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
++P +R+G S+ + +D S D DL+E I R
Sbjct: 167 YAPLVHRLGISKI------------KWELEDLSLRYLDPE--GYYDLVEK-----IAKKR 207
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
+R +++ + I+L S E L KE I I G
Sbjct: 208 VEREEYIKRI-----------------ISLIS-----EKL-KEANIEVGQIDG------- 237
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K YSI+ KM+ + + ++YD A+R++V +++ CY +L I+H L+ P
Sbjct: 238 RPKHFYSIYRKMKEQGKTLEEIYDLFAIRIIVN---------SVKDCYGVLGIIHTLFKP 288
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ G F DYI PKP+ YQSLHT V GP+G EVQIRT MH AE+G+AAHW YKE
Sbjct: 289 MPGRFKDYIAMPKPNMYQSLHTTVIGPEGEPFEVQIRTFDMHRTAEYGIAAHWKYKEG-- 346
Query: 522 KLQSISSMDESD 533
I S DE +
Sbjct: 347 ---RIKSTDEDE 355
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 716 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 775
+ K LR +L W+++L+ +S K N D V V P G+++ L G
Sbjct: 354 DEKFAWLRELLEWQKELKDAKEFMESL---KINLFSDEV------FVFTPKGDVINLPQG 404
Query: 776 STAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
ST D A ++G + VNG+LV + ELK+GDIVE+
Sbjct: 405 STPIDFAYAIHSEIGNKMAGAKVNGKLVPIDYELKNGDIVEI 446
>gi|347730539|gb|AEP20477.1| RelA/SpoT-like protein [Quercus suber]
Length = 506
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 146/432 (33%), Positives = 205/432 (47%), Gaps = 96/432 (22%)
Query: 98 IFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGIL 157
IF ++ V KA A++AH GQ R +GDPYL HC+ T +LA++ +S V AG+L
Sbjct: 1 IFCEDFVVKAFYEAEKAHRGQMRASGDPYLQHCVETAVMLALIGANST-----VVAAGLL 55
Query: 158 HDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADR 217
HD +DD+ + + FG VA LV GVS+LS++++L R + T ADR
Sbjct: 56 HDTLDDSFMNYDYVFGTFGAGVADLVEGVSKLSHLSKLAR-------DNNTANKTVEADR 108
Query: 218 LHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMR 276
LH M L A ARAV LI LA RL + L A L P ++
Sbjct: 109 LHTM----FLAMADARAV-----LI--KLADRLHNMMTLDA---------LPPAKQQRFA 148
Query: 277 ADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPF 335
+ +++P NR+G S S KD LE +
Sbjct: 149 KETLEIFAPLANRLGIS-------------------------------SWKDQLENLC-- 175
Query: 336 DILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLI-STSYIPG 394
F H L + +K+V+ A+ + + E L++ L S SY
Sbjct: 176 -----------FKH-LHPDQHEELSSKLVESFDEAM--ITSATEKLKQALKAKSVSY--- 218
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
LS R KSLYSI+SKM +K + + +++D LR++V ++ CY L +
Sbjct: 219 --QDLSGRHKSLYSIYSKMLKKKLTMDEIHDIHGLRLIVDNEED---------CYKALRV 267
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH+LW + G+ DYI +PK +GY+SLHT V LEVQIRT++MH AE G AAHW
Sbjct: 268 VHQLWPEVPGKLKDYISHPKFNGYRSLHTVVMDEGMVPLEVQIRTREMHLQAEFGFAAHW 327
Query: 515 LYKETGNKLQSI 526
YKE K S
Sbjct: 328 RYKEGDCKHPSF 339
>gi|312135681|ref|YP_004003019.1| (p)ppgpp synthetase i, spot/rela [Caldicellulosiruptor owensensis
OL]
gi|311775732|gb|ADQ05219.1| (p)ppGpp synthetase I, SpoT/RelA [Caldicellulosiruptor owensensis
OL]
Length = 726
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 133/417 (31%), Positives = 195/417 (46%), Gaps = 97/417 (23%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA FA++ H GQ R +G+PY+ H + ILA L + + ++VAG+LHDVV+D
Sbjct: 28 IKKAFEFAQKHHEGQARSSGEPYIVHPLEVALILADL-----ELDIASIVAGLLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
SL IE EFG E+A+LV GV++ LG E +L
Sbjct: 83 TSASLEDIEREFGKEIAELVDGVTK--------------------LGKLEFTSKLERQAE 122
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
Y A+A++ +I LA RL + LK L P+ R+ + +
Sbjct: 123 NYR---KMLIAMAKDIRVILIKLADRLHNMRTLK---------YLPPEKQRQKAQETIEI 170
Query: 283 WSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
++P +R+G S+ + +D S D DL+E I R
Sbjct: 171 YAPLAHRLGISKI------------KWELEDLSLRYLDPE--GYYDLVEK-----IAKKR 211
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
+R +++ + I+L S E L KE I I G
Sbjct: 212 VEREEYIKRI-----------------ISLIS-----EKL-KEANIEVGQIDG------- 241
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K YSI+ KM+ + + ++YD A+R++V +++ CY +L I+H L+ P
Sbjct: 242 RPKHFYSIYRKMKEQGKTLEEIYDLFAIRIIVN---------SVKDCYGVLGIIHTLFKP 292
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
+ G F DYI PKP+ YQSLHT V GP+G EVQIRT MH AE+G+AAHW YKE
Sbjct: 293 MPGRFKDYIAMPKPNMYQSLHTTVIGPEGEPFEVQIRTFDMHRTAEYGIAAHWKYKE 349
Score = 44.7 bits (104), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 716 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 775
+ K LR +L W+++L+ +S K N D V V P G+++ L G
Sbjct: 358 DEKFAWLRELLEWQKELKDAKEFMESL---KINLFSDEV------FVFTPKGDVISLPQG 408
Query: 776 STAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
ST D A ++G + VNG+LV + ELK+GDIVE+
Sbjct: 409 STPIDFAYAIHSEIGNKMAGAKVNGKLVPIDYELKNGDIVEI 450
>gi|336395470|ref|ZP_08576869.1| GTP pyrophosphokinase [Lactobacillus farciminis KCTC 3681]
Length = 743
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 139/433 (32%), Positives = 204/433 (47%), Gaps = 106/433 (24%)
Query: 95 GYPIFNDEQVQ---KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
GY NDE V+ KA FA H Q R TG+PY+ H +ILA L T
Sbjct: 19 GY--MNDEHVEFVNKAYNFAAYVHKEQKRATGEPYIIHPTQVAQILASLHMDPY-----T 71
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
V AG LHDVV+D +LG ++E FGD+VA +V GV+++S + H H
Sbjct: 72 VAAGYLHDVVEDTNVTLGDVKELFGDQVATIVDGVTKIS----KYKYH----------SH 117
Query: 212 EELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQ 270
+EL H + A A++ +I LA RL + LKA L+P
Sbjct: 118 QELLAENHRKMLL---------ATAKDLRVIMVKLADRLHNMRTLKA---------LRPD 159
Query: 271 IFRKMRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDL- 328
R++ + +++P +R+G S+ ++DL
Sbjct: 160 KQRRIANETLEIYAPLADRLGISKI---------------------------KWELEDLS 192
Query: 329 LEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLIS 388
L + P ++ + +H L S Q++A + + A+ + +AL
Sbjct: 193 LHYINP-------QQYYRIVH-LMNSKRDQREAYIAE----AIDYIKKNVDAL------- 233
Query: 389 TSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCC 448
G++ + R K +YSI+ KMR K ++YD A+R+VV +++ C
Sbjct: 234 -----GIKYDIYGRPKHIYSIYKKMRDKHKQFSELYDLLAIRIVVD---------SVKDC 279
Query: 449 YSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEH 508
Y++L +H W PI G F DYI PK +GYQSLHT + GP G LEVQIRT +MH+ AE+
Sbjct: 280 YAVLGSIHSKWKPIPGRFKDYIAVPKANGYQSLHTTIIGPGGQPLEVQIRTFEMHQVAEY 339
Query: 509 GLAAHWLYKETGN 521
G+AAHW YKE GN
Sbjct: 340 GVAAHWAYKE-GN 351
>gi|356519788|ref|XP_003528551.1| PREDICTED: uncharacterized protein LOC100789399 [Glycine max]
Length = 714
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 148/427 (34%), Positives = 205/427 (48%), Gaps = 98/427 (22%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF +E V KA A++AH GQ R +GDPYL HC+ T +LA++ +S V AG
Sbjct: 204 HKIFCEEFVIKAFCEAEKAHRGQMRASGDPYLQHCLETAVLLALIGANS-----TVVAAG 258
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
+LHD +DDA + I FG VA LV GVS+LS++++L R + T A
Sbjct: 259 LLHDSLDDAFLTYDYIVGVFGTGVADLVEGVSKLSHLSKLARENN-------TASKSVEA 311
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRK 274
DRLH T++ L A ARA + LA RL + L A + Q F K
Sbjct: 312 DRLH---TMF-LGMADARA-------VLVKLADRLHNMMTLDA------LPGAKQQRFAK 354
Query: 275 MRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVV 333
+ +++P NR+G S + K+ LE +
Sbjct: 355 ---ETLEIFAPLANRLGIS-------------------------------TWKEQLENLC 380
Query: 334 PFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQ--DAGIALTSLVACEEALEKELLISTSY 391
F H L S + +K+V+ D + +++ E+AL+ E IS +
Sbjct: 381 -------------FKH-LNPSQHEELSSKLVESYDDAMITSAIERLEQALKDEG-ISYNV 425
Query: 392 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 451
I G R KSLYSI+ KM +K + I ++D LR++V DK + CY
Sbjct: 426 ISG-------RHKSLYSIYCKMLKKKLTIDDIHDIYGLRLIV-DKE--------EDCYKA 469
Query: 452 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 511
L +VHRLW + G+ DYI PK +GYQSLHT V G LEVQIRT+ MH A+ G A
Sbjct: 470 LTVVHRLWSEVPGKLKDYICRPKFNGYQSLHTVVMGEGKVPLEVQIRTKDMHLQADFGFA 529
Query: 512 AHWLYKE 518
AHW YKE
Sbjct: 530 AHWRYKE 536
>gi|392988581|ref|YP_006487174.1| GTP pyrophosphokinase [Enterococcus hirae ATCC 9790]
gi|392336001|gb|AFM70283.1| GTP pyrophosphokinase [Enterococcus hirae ATCC 9790]
Length = 737
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 136/420 (32%), Positives = 197/420 (46%), Gaps = 98/420 (23%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
VQKA +A AH GQFRK+G+PY+ H I ILA L + TV G LHDVV+D
Sbjct: 28 VQKACDYATAAHDGQFRKSGEPYIIHPIQVAGILADL-----RMDPHTVATGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L ++EEFG +VA LV GV++L I + H E+LA+ M
Sbjct: 83 TDVTLDDLKEEFGPDVAMLVDGVTKLGKIK--YKSHE-----------EQLAENHRKMLL 129
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
A+AQ+ +I LA RL + LK ED R++ + +
Sbjct: 130 ----------AMAQDLRVIMVKLADRLHNMRTLKHLREDKQ---------RRIAQETLEI 170
Query: 283 WSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
++P +R+G S RI + L R + + + H++ K R
Sbjct: 171 YAPLAHRLGIS-RIKWELEDTAL--RYLNPKQYYRIV--HLMQTK--------------R 211
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
+R K+++ V+D +A L E +
Sbjct: 212 EEREKYVN------------ATVEDIRLATEELDIYAE-------------------IYG 240
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L +H W P
Sbjct: 241 RPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLGAIHTKWKP 291
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ G F DYI PK + YQSLHT V GP G+ +E+QIRTQ+MHE AE G+AAHW YKE N
Sbjct: 292 MPGRFKDYIAMPKANMYQSLHTTVIGPAGNPVEIQIRTQEMHEIAEFGVAAHWAYKEGKN 351
>gi|222529929|ref|YP_002573811.1| (p)ppGpp synthetase I SpoT/RelA [Caldicellulosiruptor bescii DSM
6725]
gi|222456776|gb|ACM61038.1| (p)ppGpp synthetase I, SpoT/RelA [Caldicellulosiruptor bescii DSM
6725]
Length = 726
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 136/432 (31%), Positives = 200/432 (46%), Gaps = 102/432 (23%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA FA++ H GQ R +G+PY+ H + ILA L + + ++VAG+LHDVV+D
Sbjct: 28 IKKAFEFAQKHHDGQSRNSGEPYIVHPLEVALILADL-----ELDIASIVAGLLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
SL +E EFG E+A+LV GV++ LG E +L
Sbjct: 83 TSASLEDVEREFGKEIAELVDGVTK--------------------LGKLEFTSKLERQAE 122
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
Y A+A++ +I LA RL + LK L P+ R+ + +
Sbjct: 123 NYR---KMLIAMAKDIRVILIKLADRLHNMRTLK---------YLPPEKQRQKAQETIDI 170
Query: 283 WSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
++P +R+G S+ + +D S D DL+E I R
Sbjct: 171 YAPLAHRLGISKI------------KWELEDLSLRYLDPE--GYYDLVEK-----IAKKR 211
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
+R +++ + I+L S E L KE I I G
Sbjct: 212 VEREEYIKKI-----------------ISLIS-----EKL-KEANIEVGQIDG------- 241
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K YSI+ KM+ + + ++YD A+R++V +++ CY +L I+H L+ P
Sbjct: 242 RPKHFYSIYRKMKEQGKTLEEIYDLFAIRIIVN---------SVKDCYGVLGIIHTLFKP 292
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ G F DYI PKP+ YQSLHT V GP+G EVQIRT MH AE+G+AAHW YKE
Sbjct: 293 MPGRFKDYIAMPKPNMYQSLHTTVIGPEGEPFEVQIRTFDMHRTAEYGIAAHWKYKEG-- 350
Query: 522 KLQSISSMDESD 533
I S DE +
Sbjct: 351 ---RIKSTDEDE 359
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 716 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 775
+ K LR +L W+++L+ +S K N D V V P G+++ L G
Sbjct: 358 DEKFAWLRELLEWQKELKDAKEFMESL---KINLFSDEV------FVFTPKGDVISLPQG 408
Query: 776 STAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
ST D A ++G + VNG+LV + ELK+GDIVE+
Sbjct: 409 STPIDFAYAIHSEIGNKMAGAKVNGKLVPIDYELKNGDIVEI 450
>gi|306490820|gb|ADM94941.1| guanosine polyphosphate pyrophosphohydrolase/synthetases
[uncultured candidate division JS1 bacterium]
Length = 724
Score = 170 bits (430), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 130/421 (30%), Positives = 196/421 (46%), Gaps = 94/421 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA F+++AH Q R +G PYL+H + ILA L + T+VAG+LHDVV+D
Sbjct: 29 LRKAYIFSQQAHQNQKRYSGQPYLSHPLGVADILADL-----NMDIITIVAGLLHDVVED 83
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L IE+ FG EVA LV GV++LS I+ + R+ N R
Sbjct: 84 TQVNLEEIEQVFGAEVAMLVNGVTKLSKISFKTKEERQ----------------AENFRK 127
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
++ A+A++ +I LA RL + L + V P+ +K + L
Sbjct: 128 MFL-------AIAEDIRVILIKLADRLN------NMRTLKY-VPAPKRLKKAKETLDIYV 173
Query: 284 SPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRK 343
NR+G R +K LE ++ D RK
Sbjct: 174 PIANRLGLYR-------------------------------VKWELEDYALLNL--DPRK 200
Query: 344 RTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRL 403
+ +AKS ++K EE K+ ++ G++ + R
Sbjct: 201 YNELARKVAKSRAEREKY---------------IEEV--KKRIVEELQKFGIKARIQGRP 243
Query: 404 KSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPID 463
K++YSI+ KM +D ++YD A+R++ +I CY+ L ++H LW P+
Sbjct: 244 KNIYSIYKKMEEQDKDFFQIYDLMAIRIICN---------SITDCYASLGLLHSLWKPMP 294
Query: 464 GEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKL 523
G F DYI PK + YQSLHT V +G LEVQIRT++MH AE+G+AAHW YKE G+ L
Sbjct: 295 GRFKDYIAMPKSNMYQSLHTTVITSEGEPLEVQIRTEEMHRTAEYGIAAHWKYKEKGDFL 354
Query: 524 Q 524
+
Sbjct: 355 K 355
>gi|357057600|ref|ZP_09118458.1| hypothetical protein HMPREF9334_00175 [Selenomonas infelix ATCC
43532]
gi|355374848|gb|EHG22139.1| hypothetical protein HMPREF9334_00175 [Selenomonas infelix ATCC
43532]
Length = 743
Score = 170 bits (430), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 135/450 (30%), Positives = 212/450 (47%), Gaps = 105/450 (23%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
+++KA A++AH GQ R +GD Y+ H ++ IL L +T+ A +LHDVV+
Sbjct: 29 KIRKAYDCAEKAHSGQVRISGDAYIVHPLNVAYILTGLHLDD-----ETICAALLHDVVE 83
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMR 222
D C +L ++ EFG + +L+ GV++L I + + E++ +L N R
Sbjct: 84 DTCATLEEMDAEFGRNIMELIDGVTKLGRIEYMSK--------------EDV--KLENYR 127
Query: 223 TIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLAS 281
++ A+A++ +I LA RL + LK ED + + I ++ A LA
Sbjct: 128 KMFL-------AMAKDIRVIMIKLADRLHNMRTLKYMREDKRQRIAKETI--EVYAPLA- 177
Query: 282 MWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
NR+G S + V L R + + +E + R
Sbjct: 178 -----NRLGIS---SIKVELEDLCLRYLEPEAYYALVEE----------------VKHKR 213
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
++R +F+ + S+ E LE G+E +
Sbjct: 214 QERQEFIRE----------------------SIRQIREKLEA---------AGIEAEIKG 242
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K YSI+ KM+R + + ++YD A+RV+V +++ CY +L ++H +W P
Sbjct: 243 RAKHFYSIYRKMKRDNKSVSEIYDLSAVRVLVS---------SVKDCYGVLGVIHAMWKP 293
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
I G F DYI PK +GYQSLHT V G LE+QIRT+ MH+ +E G+AAHW YKE G
Sbjct: 294 IPGRFKDYIAMPKSNGYQSLHTTVM-THGDPLEIQIRTKAMHQVSEFGVAAHWKYKEAG- 351
Query: 522 KLQSISSMDESDIEAS-----SSLSKDTDD 546
+SI + DE+D + S SL K+ DD
Sbjct: 352 --RSIGATDENDQKMSWLRQMVSLQKEYDD 379
>gi|312127055|ref|YP_003991929.1| (p)ppgpp synthetase i, spot/rela [Caldicellulosiruptor
hydrothermalis 108]
gi|311777074|gb|ADQ06560.1| (p)ppGpp synthetase I, SpoT/RelA [Caldicellulosiruptor
hydrothermalis 108]
Length = 722
Score = 169 bits (429), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 136/432 (31%), Positives = 200/432 (46%), Gaps = 102/432 (23%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA FA++ H GQ R +G+PY+ H + ILA L + + ++VAG+LHDVV+D
Sbjct: 24 IKKAFDFAQKYHDGQARNSGEPYIVHPLEVALILADL-----ELDIASIVAGLLHDVVED 78
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
SL +E EFG E+A LV GV++ LG E +L
Sbjct: 79 TSASLEDVEREFGKEIADLVDGVTK--------------------LGKLEFTSKLERQAE 118
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
Y A+A++ +I LA RL + LK L P+ R+ + +
Sbjct: 119 NYR---KMLIAMAKDIRVILIKLADRLHNMRTLK---------YLPPEKQRQKAQETIDI 166
Query: 283 WSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
++P +R+G S+ + +D S D DL+E I R
Sbjct: 167 YAPLAHRLGISKI------------KWELEDLSLRYLDPE--GYYDLVEK-----IAKKR 207
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
+R +++ + I+L S E L KE I I G
Sbjct: 208 VEREEYIKKI-----------------ISLIS-----EKL-KEANIEVGQIDG------- 237
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K YSI+ KM+++ + ++YD A+R++V +++ CY +L I+H L+ P
Sbjct: 238 RPKHFYSIYRKMKQQGKTLEEIYDLFAIRIIVN---------SVKDCYGVLGIIHTLFKP 288
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ G F DYI PKP+ YQSLHT V GP+G EVQIRT MH AE+G+AAHW YKE
Sbjct: 289 MPGRFKDYIAMPKPNMYQSLHTTVIGPEGEPFEVQIRTFDMHRTAEYGIAAHWKYKEG-- 346
Query: 522 KLQSISSMDESD 533
I S DE +
Sbjct: 347 ---RIKSTDEDE 355
Score = 44.7 bits (104), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 716 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 775
+ K LR +L W+++L+ +S K N D V V P G+++ L G
Sbjct: 354 DEKFAWLRELLEWQKELKDAKEFMESL---KINLFSDEV------FVFTPKGDVISLPQG 404
Query: 776 STAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
ST D A ++G + VNG+LV + ELK+GDIVE+
Sbjct: 405 STPIDFAYAIHSEIGNKMAGAKVNGKLVPIDYELKNGDIVEI 446
>gi|407003296|gb|EKE19893.1| hypothetical protein ACD_8C00092G0015 [uncultured bacterium]
Length = 496
Score = 169 bits (429), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 136/417 (32%), Positives = 202/417 (48%), Gaps = 96/417 (23%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ +A FA +AH GQ R++G+ Y+ H I +ILA + GK T+ AG+LHDV +D
Sbjct: 25 ITEAYNFAMKAHTGQLRRSGEDYIQHPIAVAKILAE-VGMGGK----TIAAGLLHDVPED 79
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L +E+EFG E+A+LV GV++L I LR HEE L N+R
Sbjct: 80 TQMTLEDVEKEFGKEIAQLVNGVTKLGKIK--LRG-----------SHEEYF--LENLRK 124
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
+ A+A + +I LA RL ++ L + Q+ R R +
Sbjct: 125 MLL-------AMASDIRVIIIKLADRL------HNMQTLQHNPPEKQV-RIARETMEVFA 170
Query: 284 SPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFD-EHVLSMKDLLEAVVPFDILSDRR 342
NR+G + ++ D SF D E+ ++K++ E
Sbjct: 171 PIANRLGMG------------EMKSQLQDLSFKYLDPENYKTVKEMEE------------ 206
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEV-TLSS 401
+H ++K K V L ++ + ++KE G+ V +S
Sbjct: 207 -----IH-------YKEKEKYV------LQAIKEIQTEMKKE---------GITVLDISG 239
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R KS+YS+F K+++ D+ I ++YD A+RV V + + CY L IVH+ + P
Sbjct: 240 RAKSVYSLFLKLQKHDMDISRIYDLAAVRVTVQE---------VADCYETLGIVHKKYRP 290
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
+ G DYI PKP+GYQS+HT V GPDG LEVQIRT KMH AE G+AAHW+Y E
Sbjct: 291 MIGRIKDYISLPKPNGYQSIHTTVFGPDGKILEVQIRTIKMHNEAEFGIAAHWIYAE 347
>gi|407010993|gb|EKE25735.1| hypothetical protein ACD_5C00050G0005 [uncultured bacterium]
Length = 498
Score = 169 bits (429), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 135/421 (32%), Positives = 202/421 (47%), Gaps = 96/421 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA FAK+AH GQ R++G+ Y+ H + +ILA I GK T+ A +LHD +D
Sbjct: 26 IKKAYEFAKKAHEGQKRRSGEDYIQHPLAAAKILAE-IGMGGK----TIAASLLHDTAED 80
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
++ IE+ FG E+A +V GV++L I LR HEE L N+R
Sbjct: 81 TEVTIEEIEKTFGKEIAAMVDGVTKLGKIK--LRG-----------SHEEYF--LENLRK 125
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
++ A+A + +I LA RL ++ L + QI R R +
Sbjct: 126 MFI-------AMATDIRVIIIKLADRL------HNMQTLEHNPPEKQI-RIARETMEVFA 171
Query: 284 SPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDE-HVLSMKDLLEAVVPFDILSDRR 342
NR+G + +T D +F D + +K+L E D +
Sbjct: 172 PIANRLGMG------------EIKTQLQDLAFQYLDPVNYERVKELEE--------KDYK 211
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEV-TLSS 401
+R KF+ D I+ E ++KE G++V +
Sbjct: 212 ERKKFV-----------------DQAIS-----ELETEIKKE---------GIDVLEIHG 240
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R KS+YS++ K+++ D+ I++VYD A+R++V + + CY L +VH+ + P
Sbjct: 241 RAKSIYSLYLKLQKHDMDINRVYDLSAVRILVNE---------VADCYETLGVVHKKYRP 291
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ G DYI PKP+GYQS+HT V GPDG +EVQIRT KMH AE G+AAHWLY E
Sbjct: 292 MIGRIKDYISLPKPNGYQSIHTTVFGPDGKIMEVQIRTLKMHNEAEFGIAAHWLYSERKK 351
Query: 522 K 522
K
Sbjct: 352 K 352
>gi|225026135|ref|ZP_03715327.1| hypothetical protein EUBHAL_00376 [Eubacterium hallii DSM 3353]
gi|224956540|gb|EEG37749.1| RelA/SpoT family protein [Eubacterium hallii DSM 3353]
Length = 758
Score = 169 bits (429), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 134/463 (28%), Positives = 217/463 (46%), Gaps = 98/463 (21%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + V+KA A+ AH Q RK+G+PY+ H + ILA L + +T+VAG
Sbjct: 39 HPSTDLSMVEKAYKLARDAHKDQKRKSGEPYIIHPLCVAIILAEL-----ELDKETIVAG 93
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
ILHDVV+D +L + EF DEVA LV GV++L Q + H+++
Sbjct: 94 ILHDVVEDTTATLEDLSREFNDEVALLVDGVTKLG---------------QLSYSHDKMD 138
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
+ N+R ++ A+A++ +I LA RL + L + ++P+ ++
Sbjct: 139 LQAENLRKMFL-------AMAKDIRVILIKLADRL------HNMRTLQY--MRPEKQKEK 183
Query: 276 RADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVP 334
+ +++P +R+G S+ +T DD S V KDL E
Sbjct: 184 ARETMDIYAPIAHRLGISKI------------KTELDDLSLKYLQPEVY--KDLEEK--- 226
Query: 335 FDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPG 394
+ +++ R F+ + +K +++AGI
Sbjct: 227 --LQTNKEGRENFIQSIIDEV-----SKHIEEAGI------------------------- 254
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+ R+K L+SI+ KMR ++ + ++YD A+R+ V ++ CY+ L +
Sbjct: 255 -RAEIDGRVKHLFSIYKKMRNQNKTLDQIYDIFAVRIKVD---------TVKDCYAALGV 304
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
+H ++ PI G F DYI PK + YQSLHT + G G+ E+QIRT +MH AE+G+AAHW
Sbjct: 305 IHEMYKPIPGRFKDYIAMPKQNMYQSLHTTLIGSSGTPFEIQIRTFEMHRTAEYGIAAHW 364
Query: 515 LYKETG---NKLQSISSMDESDIEASSSLSKDTDDHNPLDTDL 554
YKE G NK + S +E +S + + L TDL
Sbjct: 365 KYKEGGGNINKEEEKLSWLRQILEWQQDMSDNKEFLTMLKTDL 407
>gi|289578226|ref|YP_003476853.1| (p)ppGpp synthetase I SpoT/RelA [Thermoanaerobacter italicus Ab9]
gi|289527939|gb|ADD02291.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter italicus Ab9]
Length = 719
Score = 169 bits (428), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 137/461 (29%), Positives = 210/461 (45%), Gaps = 101/461 (21%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
N + + K+ FA AH GQ R +G+PY+ H I ILA L + + T+ AG+LHD
Sbjct: 18 NLDLIYKSYDFAVNAHDGQMRNSGEPYIVHPIEVSYILADL-----ELDITTIAAGLLHD 72
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLH 219
V++D + + E+FG E+A LV GV++L I ++ +
Sbjct: 73 VIEDTDVTYEQLLEKFGKEIADLVDGVTKLGKIEY----------------KSKVEQQAE 116
Query: 220 NMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRAD 278
NMR + A+A++ +I LA RL + LK L P ++ +
Sbjct: 117 NMRKMLI-------AMAKDIRVILIKLADRLHNMRTLK---------YLPPDKQKEKAEE 160
Query: 279 LASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDI 337
+++P +R+G S+ I + L R DE + DL+E V
Sbjct: 161 TLEIYAPIAHRLGISK-IKWELEDLCL--RYLHPDEYY-----------DLVEKVA---- 202
Query: 338 LSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEV 397
+ R++R + + ++ + +E L KE+ G++
Sbjct: 203 -AKRKEREELIQNI----------------------ITTIKEKL-KEM--------GIQA 230
Query: 398 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 457
+ R K YSI+ KM+ ++ ++YD A+R++V ++ CY +L IVH
Sbjct: 231 EVDGRPKHFYSIYKKMKTQNKSFDQIYDLLAVRIIVN---------TVKECYGVLGIVHT 281
Query: 458 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 517
LW PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAHW YK
Sbjct: 282 LWKPIPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEIQIRTWEMHKTAEYGIAAHWKYK 341
Query: 518 E---TGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLF 555
E T +K S +E L + L DLF
Sbjct: 342 EGKTTEDKFDQKLSWLRQLLEWQKELKDAKEFMETLKIDLF 382
Score = 47.4 bits (111), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 710 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 769
+ E + K+ LR +L W+++L+ ++ K + D V V P G++
Sbjct: 345 TTEDKFDQKLSWLRQLLEWQKELKDAKEFMETL---KIDLFTDEV------FVFTPKGDV 395
Query: 770 MRLRSGSTAADAAMKVGLEGKLVL----VNGQLVLPNTELKDGDIVEVRV 815
+ L +GST D A + E L VNG+LV N +LK+GDIVE+ V
Sbjct: 396 INLPAGSTPVDFAYSIHTEIGHRLNGAKVNGKLVPINYQLKNGDIVEILV 445
>gi|225376526|ref|ZP_03753747.1| hypothetical protein ROSEINA2194_02168 [Roseburia inulinivorans DSM
16841]
gi|225211625|gb|EEG93979.1| hypothetical protein ROSEINA2194_02168 [Roseburia inulinivorans DSM
16841]
Length = 768
Score = 169 bits (428), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 128/424 (30%), Positives = 201/424 (47%), Gaps = 105/424 (24%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA A AH GQ RK+G+PY+ H + ILA L + +T+VAG+LHDVV+D
Sbjct: 52 IEKAYNIAYEAHKGQVRKSGEPYIIHPLCVAIILAEL-----ELDKETIVAGLLHDVVED 106
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLH---- 219
+ I++EFG EVA LV GV++L G L ++ AD++
Sbjct: 107 TVMTDEEIKQEFGAEVALLVDGVTKL-----------------GQLSYD--ADKVEVQAE 147
Query: 220 NMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRAD 278
N+R ++ A+A++ +I LA RL + LK + P+ ++ +
Sbjct: 148 NLRKMFL-------AMAKDIRVILIKLADRLHNMRTLK---------YMTPEKQKEKARE 191
Query: 279 LASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDI 337
+++P R+G S+ + DD LS+K LE +D+
Sbjct: 192 TMDIYAPIAQRLGISKI------------KIELDD----------LSLK-YLEPEAYYDL 228
Query: 338 LSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEV 397
+ +R D +S + K K + +AGI
Sbjct: 229 VHQIAQRKSVRDDYVQSLVEEVK-KHIHEAGIP--------------------------A 261
Query: 398 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 457
+ R K +SI+ KM+ +D + ++YD A+R++V +++ CY+ L ++H
Sbjct: 262 QIDGRAKHFFSIYKKMKNQDKTLDQIYDLFAIRIIVD---------SVKDCYAALGVIHE 312
Query: 458 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 517
++ PI G F DYI PKP+ YQSLHT + GP G E+QIRT +MH AE+G+AAHW YK
Sbjct: 313 MYKPIPGRFKDYIAMPKPNMYQSLHTTLIGPTGQPFEIQIRTYEMHRTAEYGIAAHWKYK 372
Query: 518 ETGN 521
E N
Sbjct: 373 EASN 376
>gi|297544507|ref|YP_003676809.1| (p)ppGpp synthetase I SpoT/RelA [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296842282|gb|ADH60798.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 719
Score = 169 bits (428), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 137/461 (29%), Positives = 210/461 (45%), Gaps = 101/461 (21%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
N + + K+ FA AH GQ R +G+PY+ H I ILA L + + T+ AG+LHD
Sbjct: 18 NLDLIYKSYDFAVNAHDGQMRNSGEPYIVHPIEVSYILADL-----ELDITTIAAGLLHD 72
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLH 219
V++D + + E+FG E+A LV GV++L I ++ +
Sbjct: 73 VIEDTDVTYEQLLEKFGKEIADLVDGVTKLGKIEY----------------KSKVEQQAE 116
Query: 220 NMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRAD 278
NMR + A+A++ +I LA RL + LK L P ++ +
Sbjct: 117 NMRKMLI-------AMAKDIRVILIKLADRLHNMRTLK---------YLPPDKQKEKAEE 160
Query: 279 LASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDI 337
+++P +R+G S+ I + L R DE + DL+E V
Sbjct: 161 TLEIYAPIAHRLGISK-IKWELEDLCL--RYLHPDEYY-----------DLVEKVA---- 202
Query: 338 LSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEV 397
+ R++R + + ++ + +E L KE+ G++
Sbjct: 203 -AKRKEREELIQNI----------------------ITTIKEKL-KEM--------GIQA 230
Query: 398 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 457
+ R K YSI+ KM+ ++ ++YD A+R++V ++ CY +L IVH
Sbjct: 231 EVDGRPKHFYSIYKKMKTQNKSFDQIYDLLAVRIIVN---------TVKDCYGVLGIVHT 281
Query: 458 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 517
LW PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAHW YK
Sbjct: 282 LWKPIPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEIQIRTWEMHKTAEYGIAAHWKYK 341
Query: 518 E---TGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLF 555
E T +K S +E L + L DLF
Sbjct: 342 EGKTTEDKFDQKLSWLRQLLEWQKELKDAKEFMETLKIDLF 382
Score = 47.4 bits (111), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 710 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 769
+ E + K+ LR +L W+++L+ ++ K + D V V P G++
Sbjct: 345 TTEDKFDQKLSWLRQLLEWQKELKDAKEFMETL---KIDLFTDEV------FVFTPKGDV 395
Query: 770 MRLRSGSTAADAAMKVGLEGKLVL----VNGQLVLPNTELKDGDIVEVRV 815
+ L +GST D A + E L VNG+LV N +LK+GDIVE+ V
Sbjct: 396 INLPAGSTPVDFAYSIHTEIGHRLNGAKVNGKLVPINYQLKNGDIVEILV 445
>gi|365904121|ref|ZP_09441880.1| GTP pyrophosphokinase [Lactobacillus versmoldensis KCTC 3814]
Length = 745
Score = 169 bits (427), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 135/423 (31%), Positives = 195/423 (46%), Gaps = 101/423 (23%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E V KA FA H Q R TG+PY+ H +IL L + TV AG LHDVV
Sbjct: 26 EFVNKAYNFAAYVHKEQKRATGEPYIIHPTQVAQILVSL-----RMDPYTVAAGYLHDVV 80
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNM 221
+D +LG + E FGD+VA +V GV+++S + H H+EL H
Sbjct: 81 EDTNITLGDVNELFGDQVATIVDGVTKISK----YKYH----------SHQELLAENHRK 126
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLA 280
I A A++ +I LA RL + LKA L+P R++ +
Sbjct: 127 MLI---------ATAKDLRVIMVKLADRLHNMRTLKA---------LRPDKQRRIATETL 168
Query: 281 SMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDL-LEAVVPFDIL 338
+++P +R+G S RI ++DL L+ + P
Sbjct: 169 EIYAPLADRLGIS-RIK--------------------------WELEDLSLQYINP---- 197
Query: 339 SDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVT 398
++ + +H L S Q++ + + TS+ + G++
Sbjct: 198 ---QQYYRIVH-LMNSKREQREGYIAEAIKYIRTSVDSL----------------GIKYE 237
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+ R K +YSI+ KMR K ++YD A+R+VV ++ CY++L +H
Sbjct: 238 IYGRPKHIYSIYKKMRDKHKQFSELYDLLAIRIVVD---------TVKDCYAVLGSIHSK 288
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI G F DYI PK +GYQSL T + GP G LEVQIRT KMH+ AE+G+AAHW YKE
Sbjct: 289 WKPIPGRFKDYIAVPKTNGYQSLQTTIIGPGGQPLEVQIRTHKMHDVAEYGVAAHWAYKE 348
Query: 519 TGN 521
GN
Sbjct: 349 -GN 350
>gi|242044820|ref|XP_002460281.1| hypothetical protein SORBIDRAFT_02g025940 [Sorghum bicolor]
gi|241923658|gb|EER96802.1| hypothetical protein SORBIDRAFT_02g025940 [Sorghum bicolor]
Length = 712
Score = 169 bits (427), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 144/428 (33%), Positives = 201/428 (46%), Gaps = 104/428 (24%)
Query: 98 IFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGIL 157
IF++E V KA A++AH GQ R +G+PYL HC+ T +LA + G A V AG+L
Sbjct: 208 IFHEELVVKAFLEAEKAHRGQTRASGEPYLQHCVETAVLLAKI----GANAT-VVSAGLL 262
Query: 158 HDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADR 217
HD +DD+ I FG VA LV GVS+LS++++L R + T ADR
Sbjct: 263 HDTIDDSFIDYDHIFHMFGAGVADLVEGVSKLSHLSKLAR-------DNNTASRTVEADR 315
Query: 218 LHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMR 276
LH M L A ARAV LI LA RL + L+A ++++ Q F K
Sbjct: 316 LHTM----LLAMADARAV-----LI--KLADRLHNMKTLEA------LSLVKQQRFAK-- 356
Query: 277 ADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVV-- 333
+ ++ P NR+G + S KD LE +
Sbjct: 357 -ETKEIFVPLANRLG-------------------------------IASWKDQLENLCFK 384
Query: 334 ---PFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTS 390
P + K T+ + +S K K ++DAG++ +L
Sbjct: 385 YLNPEEYKELSSKLTESFDEELITSAVGKLDKGLRDAGVSYHNL---------------- 428
Query: 391 YIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYS 450
S R KSLYSI SKM +K++ + +++D LR+VV ++ CY
Sbjct: 429 ---------SGRHKSLYSIHSKMLKKNLTMEEIHDIHGLRLVVD---------TVEDCYE 470
Query: 451 LLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGL 510
L +VH+LW + G F DYI PK +GY+SLHT V EVQIRT++MH AE+G
Sbjct: 471 ALCVVHKLWPRVTGRFKDYISRPKLNGYRSLHTVVMSEGVHPFEVQIRTKEMHLQAEYGF 530
Query: 511 AAHWLYKE 518
AAHW YKE
Sbjct: 531 AAHWRYKE 538
>gi|268319355|ref|YP_003293011.1| GTP pyrophosphokinase [Lactobacillus johnsonii FI9785]
gi|262397730|emb|CAX66744.1| GTP pyrophosphokinase [Lactobacillus johnsonii FI9785]
Length = 749
Score = 169 bits (427), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 133/425 (31%), Positives = 199/425 (46%), Gaps = 99/425 (23%)
Query: 99 FNDEQ---VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
NDE V+ A FAK+AH GQFR +G PY+ H LA L + DTV AG
Sbjct: 20 MNDEHLAFVESAYEFAKKAHEGQFRVSGQPYIIHPTQVAGTLATL-----RLDPDTVAAG 74
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
LHD V+D + I+E+FG +VA +V GV++LS I + H E LA
Sbjct: 75 YLHDTVEDTPVTNDDIKEKFGKDVAFIVDGVTKLSKIQYKSKSHE-----------EYLA 123
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRK 274
D M A+A++ +I LA RL + L L+P R+
Sbjct: 124 DNHRKMLI----------AMAKDLRVIMVKLADRLHNMHTLDH---------LRPDKQRR 164
Query: 275 MRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVV 333
+ + +++P +R+G I TI + +D S H L+ + V
Sbjct: 165 IADETLDIYAPLADRLG----IGTI--------KWELEDMSL-----HYLNPQQYYRIV- 206
Query: 334 PFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIP 393
+L +S ++++ + A+++L ++L
Sbjct: 207 ----------------NLMQSKRSEREGYIAD----AISTLKQTLDSL------------ 234
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K +YSI+ KM K ++YD A+RV+V +++ CY++L
Sbjct: 235 GIKYEIYGRPKHIYSIYKKMVNKHKDFSEIYDLLAVRVIV---------KSVKDCYAVLG 285
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT+ MH+ AE+G+AAH
Sbjct: 286 AVHTKWKPMPGRFKDYIAVPKVNGYQSLHTTIIGPGGKPLEIQIRTEAMHQVAEYGVAAH 345
Query: 514 WLYKE 518
W YKE
Sbjct: 346 WAYKE 350
>gi|410657483|ref|YP_006909854.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Dehalobacter sp. DCA]
gi|410660520|ref|YP_006912891.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Dehalobacter sp. CF]
gi|409019838|gb|AFV01869.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Dehalobacter sp. DCA]
gi|409022876|gb|AFV04906.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Dehalobacter sp. CF]
Length = 722
Score = 169 bits (427), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 134/463 (28%), Positives = 209/463 (45%), Gaps = 102/463 (22%)
Query: 99 FNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILH 158
+N E++++A +A+ AH GQ R +G+ Y+ H + ILA L T++A +LH
Sbjct: 17 YNLEKIEEAYEYAELAHRGQLRNSGEKYIYHPLEVASILAELEMDDS-----TIIAALLH 71
Query: 159 DVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRL 218
DV +D +LG I + FGDEVA LV GV++L I+ ++ ++
Sbjct: 72 DVAEDTNRTLGDIRKNFGDEVAGLVDGVTKLGKISY----------------KSKVEVQV 115
Query: 219 HNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRA 277
N+R ++ A+A++ +I LA RL + LK + E + Q I ++ A
Sbjct: 116 ENLRKMFL-------AMAKDIRVILIKLADRLHNMRTLKYQSESKQKEIAQETI--EIYA 166
Query: 278 DLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDI 337
LA NR+G R + +D +F H DL+E +
Sbjct: 167 PLA------NRLGIFRI------------KWELEDLAFRYL--HSQEYYDLVEGI----- 201
Query: 338 LSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEV 397
L + ++ +V++ I L + G+E
Sbjct: 202 ------------SLKRKERQEQIDEVIEQLKIRLDEV-------------------GIEA 230
Query: 398 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 457
++ R K +SI+ KM ++ + +++D A+RV+V + CY L ++H
Sbjct: 231 DIAGRPKHFFSIYKKMLDQNKDLSEIFDLTAVRVIV---------KTVNDCYGALGVIHT 281
Query: 458 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 517
LW PI G F DYI PKP+ YQSLHT + G G E+QIRT +MH AE+G+AAHW YK
Sbjct: 282 LWKPIPGRFKDYIAMPKPNMYQSLHTTLIGNHGDPFEIQIRTWEMHRTAEYGIAAHWKYK 341
Query: 518 ETGNKLQSISSMDESDIEASSSLSKDTDDH-----NPLDTDLF 555
E G K++S S I + D+ D L DLF
Sbjct: 342 E-GKKIESNFEQKLSWIRQLLEVQHDSKDDAGEFMESLKIDLF 383
>gi|227890126|ref|ZP_04007931.1| GTP diphosphokinase [Lactobacillus johnsonii ATCC 33200]
gi|227849301|gb|EEJ59387.1| GTP diphosphokinase [Lactobacillus johnsonii ATCC 33200]
Length = 749
Score = 169 bits (427), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 133/425 (31%), Positives = 199/425 (46%), Gaps = 99/425 (23%)
Query: 99 FNDEQ---VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
NDE V+ A FAK+AH GQFR +G PY+ H LA L + DTV AG
Sbjct: 20 MNDEHLAFVESAYEFAKKAHEGQFRVSGQPYIIHPTQVAGTLATL-----RLDPDTVAAG 74
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
LHD V+D + I+E+FG +VA +V GV++LS I + H E LA
Sbjct: 75 YLHDTVEDTPVTNDDIKEKFGKDVAFIVDGVTKLSKIQYKSKSHE-----------EYLA 123
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRK 274
D M A+A++ +I LA RL + L L+P R+
Sbjct: 124 DNHRKMLI----------AMAKDLRVIMVKLADRLHNMHTLDH---------LRPDKQRR 164
Query: 275 MRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVV 333
+ + +++P +R+G I TI + +D S H L+ + V
Sbjct: 165 IADETLDIYAPLADRLG----IGTI--------KWELEDMSL-----HYLNPQQYYRIV- 206
Query: 334 PFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIP 393
+L +S ++++ + A+++L ++L
Sbjct: 207 ----------------NLMQSKRSEREGYIAD----AISTLKQTLDSL------------ 234
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K +YSI+ KM K ++YD A+RV+V +++ CY++L
Sbjct: 235 GIKYEIYGRPKHIYSIYKKMVNKHKDFSEIYDLLAVRVIV---------KSVKDCYAVLG 285
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT+ MH+ AE+G+AAH
Sbjct: 286 AVHTKWKPMPGRFKDYIAVPKVNGYQSLHTTIIGPGGKPLEIQIRTEAMHQVAEYGVAAH 345
Query: 514 WLYKE 518
W YKE
Sbjct: 346 WAYKE 350
>gi|346307058|ref|ZP_08849203.1| hypothetical protein HMPREF9457_00912 [Dorea formicigenerans
4_6_53AFAA]
gi|345907004|gb|EGX76722.1| hypothetical protein HMPREF9457_00912 [Dorea formicigenerans
4_6_53AFAA]
Length = 781
Score = 169 bits (427), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 125/437 (28%), Positives = 212/437 (48%), Gaps = 95/437 (21%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + Q++KA AK+AH Q RK+G+PY+ H + ILA L + +T++A
Sbjct: 60 HPSADVTQIEKAYNLAKKAHGDQKRKSGEPYIIHPLWVAIILADL-----EMDKETIIAA 114
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
+LHDVV+D I+EEFG+EVA LV GV++L + ++L
Sbjct: 115 LLHDVVEDTQIGEDYIKEEFGEEVALLVDGVTKLGRV---------------AYSADKLE 159
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
+ N+R ++ A+A++ +I LA RL + L F + P ++
Sbjct: 160 LQAENLRKMFL-------AMAKDIRVIIIKLADRL------HNMRTLQF--MTPAKQQEK 204
Query: 276 RADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVP 334
+ +++P R+G S+ +T DD LS+K L+ V
Sbjct: 205 ARETMDIYAPIAGRLGISKI------------KTELDD----------LSLK-YLKPDVF 241
Query: 335 FDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPG 394
FD+++ R K+ + ++V + + + + G
Sbjct: 242 FDLVNQINAR--------KTEREEFVQQIVDEVSMHMKN-------------------AG 274
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
++ ++ R+K +SI+ KM +D + ++YD A+R++V +++ CY+ L I
Sbjct: 275 IKADVNGRVKHFFSIYKKMVNQDKTVDQIYDLFAVRIIV---------DSVKDCYAALGI 325
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
+H ++ PI G F DYI PKP+ YQSLHT + G E+QIRTQ+MH+ AE+G+AAHW
Sbjct: 326 IHEIYTPIPGRFKDYIAMPKPNMYQSLHTTLMSSIGQPFEIQIRTQEMHKTAEYGIAAHW 385
Query: 515 LYKETGNKLQSISSMDE 531
YKE+G + + + +E
Sbjct: 386 KYKESGGSKKGVMAEEE 402
>gi|417837430|ref|ZP_12483668.1| GTP pyrophosphokinase , ppGpp synthetase I [Lactobacillus johnsonii
pf01]
gi|338760973|gb|EGP12242.1| GTP pyrophosphokinase , ppGpp synthetase I [Lactobacillus johnsonii
pf01]
Length = 749
Score = 169 bits (427), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 133/425 (31%), Positives = 199/425 (46%), Gaps = 99/425 (23%)
Query: 99 FNDEQ---VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
NDE V+ A FAK+AH GQFR +G PY+ H LA L + DTV AG
Sbjct: 20 MNDEHLAFVESAYEFAKKAHEGQFRVSGQPYIIHPTQVAGTLATL-----RLDPDTVAAG 74
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
LHD V+D + I+E+FG +VA +V GV++LS I + H E LA
Sbjct: 75 YLHDTVEDTPVTNDDIKEKFGKDVAFIVDGVTKLSKIQYKSKSHE-----------EYLA 123
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRK 274
D M A+A++ +I LA RL + L L+P R+
Sbjct: 124 DNHRKMLI----------AMAKDLRVIMVKLADRLHNMHTLDH---------LRPDKQRR 164
Query: 275 MRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVV 333
+ + +++P +R+G I TI + +D S H L+ + V
Sbjct: 165 IADETLDIYAPLADRLG----IGTI--------KWELEDMSL-----HYLNPQQYYRIV- 206
Query: 334 PFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIP 393
+L +S ++++ + A+++L ++L
Sbjct: 207 ----------------NLMQSKRSEREGYIAD----AISTLKQTLDSL------------ 234
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K +YSI+ KM K ++YD A+RV+V +++ CY++L
Sbjct: 235 GIKYEIYGRPKHIYSIYKKMVNKHKDFSEIYDLLAVRVIV---------KSVKDCYAVLG 285
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT+ MH+ AE+G+AAH
Sbjct: 286 AVHTKWKPMPGRFKDYIAVPKVNGYQSLHTTIIGPGGKPLEIQIRTEAMHQVAEYGVAAH 345
Query: 514 WLYKE 518
W YKE
Sbjct: 346 WAYKE 350
>gi|363899872|ref|ZP_09326379.1| hypothetical protein HMPREF9625_01039 [Oribacterium sp. ACB1]
gi|395210307|ref|ZP_10399227.1| putative GTP diphosphokinase [Oribacterium sp. ACB8]
gi|361957535|gb|EHL10843.1| hypothetical protein HMPREF9625_01039 [Oribacterium sp. ACB1]
gi|394704597|gb|EJF12135.1| putative GTP diphosphokinase [Oribacterium sp. ACB8]
Length = 755
Score = 168 bits (426), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 123/418 (29%), Positives = 193/418 (46%), Gaps = 95/418 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ KA AK H Q RK+G+PY+ H + ILA L + +T+ AG+LHDVV+D
Sbjct: 43 ITKAYEVAKEQHKDQKRKSGEPYIIHPLCVAIILADL-----EMDKETIAAGLLHDVVED 97
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L +E EF +VA LV GV++L+ +N L +++ + N+R
Sbjct: 98 TGMTLKDLEAEFNPDVASLVDGVTKLTQLN---------------LNSDKVEMQAENLRK 142
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
++ ++A++ +I LA RL L L+ +
Sbjct: 143 MFV-------SMAKDIRVIIIKLADRLHNLRTLEYQ------------------------ 171
Query: 283 WSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
SP R +R I S PL +R + + + D LS +
Sbjct: 172 -SPEKRKEKARESLEIYS--PLADRLG------------------ISKIKIEMDDLSLKY 210
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
+ +DLA +++A+ + I EE+ G+E + R
Sbjct: 211 LEPEVYYDLADKVHFKREAREDRINSIVEEVREHIEES-------------GIEANIKGR 257
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
+K +SI+ KM ++ I ++YD A+R++V ++ CY++L ++H+++ PI
Sbjct: 258 IKHFFSIYKKMVNQNKTIDQIYDLFAIRIIV---------ETVRDCYAVLGVIHKMYTPI 308
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 520
G F DYI PKP+ YQSLHT V G DG E+QIRT +MH AE G+AAHW YKE G
Sbjct: 309 PGRFKDYIAMPKPNMYQSLHTTVIGRDGVPFEIQIRTYEMHRTAEFGIAAHWKYKEQG 366
>gi|409351741|ref|ZP_11234324.1| GTP pyrophosphokinase [Lactobacillus equicursoris CIP 110162]
gi|407876538|emb|CCK86382.1| GTP pyrophosphokinase [Lactobacillus equicursoris CIP 110162]
Length = 753
Score = 168 bits (426), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 133/420 (31%), Positives = 197/420 (46%), Gaps = 99/420 (23%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+ A FA RAH GQ R +G PY+ H LA L DTV AG LHD V+D
Sbjct: 28 VESAYQFAARAHEGQTRASGQPYIVHPTQVAGTLANLGLDP-----DTVAAGFLHDTVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+ I+E+FG +VA +V GV++L N+ + H+E H
Sbjct: 83 TSVTNDDIKEKFGADVAFIVDGVTKL---NKYEYK-----------SHKEFLAENHRKML 128
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
I A+A++ +I LA RL + L+ L+P R++ A+ +
Sbjct: 129 I---------AMAKDLRVILVKLADRLHNMHTLEH---------LRPDKQRRIAAETLDI 170
Query: 283 WSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
++P +R+G I TI + +D SF H ++ + + V D + R
Sbjct: 171 YAPLADRLG----IGTI--------KWELEDMSF-----HYINPDEYYKIVSMMD--AKR 211
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
+R ++ D A+ L ++L G++ +S
Sbjct: 212 SEREGYIKD-------------------AIDYLKGTLDSL------------GIDYDISG 240
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI+ KM K +++YD A+RV+V P ++ CY++L VH W P
Sbjct: 241 RPKHIYSIYKKMVNKHKDFNEIYDLLAVRVIV---------PTVKDCYAVLGAVHTKWKP 291
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ G F DYI PK +GYQSLHT + GP G LE+QIRT++MHE AE+G+AAHW YK GN
Sbjct: 292 MPGRFKDYIAMPKANGYQSLHTTIIGPGGKPLEIQIRTKEMHEVAEYGVAAHWAYKR-GN 350
>gi|444919613|ref|ZP_21239613.1| GTP pyrophosphokinase [Cystobacter fuscus DSM 2262]
gi|444708165|gb|ELW49258.1| GTP pyrophosphokinase [Cystobacter fuscus DSM 2262]
Length = 740
Score = 168 bits (426), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 128/431 (29%), Positives = 200/431 (46%), Gaps = 99/431 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA ++ + H GQ RK+G+PYL H + +LA L K ++V G+LHD ++D
Sbjct: 23 IKKAYVYSAKVHQGQLRKSGEPYLIHPLEVAGLLAEL-----KLDEASIVTGLLHDTIED 77
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+ + E FG EVA+LV GV++LS + TL EE + N R
Sbjct: 78 TLATAEELTELFGPEVAQLVDGVTKLSKFSA-----------SATLSQEE--KQAENFRK 124
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
+ A+AQ+ +I LA R + L + Q R++ + ++
Sbjct: 125 MII-------AMAQDIRVILVKLADR------THNMRTLDHMSEEKQ--RRIAQETLDIY 169
Query: 284 SP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFD-EHVLSMKDLLEAVVPFDILSDR 341
+P NR+G S +T +D SF + L+++D I +
Sbjct: 170 APLANRLGISW------------VKTELEDLSFRYLKPQEYLALQD--------KIGRRK 209
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIP-GMEVTLS 400
++R K++ D++ LI+T G++ +S
Sbjct: 210 KEREKYIDDVST--------------------------------LITTKLTERGLKGEVS 237
Query: 401 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 460
R K +YSI+ KM+ + + +++D A R++ ++ CY L +VH+LW
Sbjct: 238 GRFKHVYSIYKKMKSQGIEFEQIHDVIAFRIITN---------SMPACYEALGLVHQLWK 288
Query: 461 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 520
P+ G F D+I PKP+ YQSLHT V GP G +EVQIRT MH+ AE G+AAHW YKE
Sbjct: 289 PVPGRFKDFIAIPKPNMYQSLHTTVVGPLGERIEVQIRTPDMHKVAEEGIAAHWAYKE-- 346
Query: 521 NKLQSISSMDE 531
K S+S DE
Sbjct: 347 GKALSVSKDDE 357
>gi|42519264|ref|NP_965194.1| GTP pyrophosphokinase [Lactobacillus johnsonii NCC 533]
gi|385825782|ref|YP_005862124.1| GTP pyrophosphokinase [Lactobacillus johnsonii DPC 6026]
gi|41583552|gb|AAS09160.1| GTP pyrophosphokinase [Lactobacillus johnsonii NCC 533]
gi|329667226|gb|AEB93174.1| GTP pyrophosphokinase [Lactobacillus johnsonii DPC 6026]
Length = 749
Score = 168 bits (426), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 133/425 (31%), Positives = 199/425 (46%), Gaps = 99/425 (23%)
Query: 99 FNDEQ---VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
NDE V+ A FAK+AH GQFR +G PY+ H LA L + DTV AG
Sbjct: 20 MNDEHLAFVESAYEFAKKAHEGQFRVSGQPYIIHPTQVAGTLATL-----RLDPDTVAAG 74
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
LHD V+D + I+E+FG +VA +V GV++LS I + H E LA
Sbjct: 75 YLHDTVEDTPVTNDDIKEKFGKDVAFIVDGVTKLSKIQYKSKSHE-----------EYLA 123
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRK 274
D M A+A++ +I LA RL + L L+P R+
Sbjct: 124 DNHRKMLI----------AMAKDLRVIMVKLADRLHNMHTLDH---------LRPDKQRR 164
Query: 275 MRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVV 333
+ + +++P +R+G I TI + +D S H L+ + V
Sbjct: 165 IADETLDIYAPLADRLG----IGTI--------KWELEDMSL-----HYLNPQQYYRIV- 206
Query: 334 PFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIP 393
+L +S ++++ + A+++L ++L
Sbjct: 207 ----------------NLMQSKRSEREGYIAD----AISTLKQTLDSL------------ 234
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K +YSI+ KM K ++YD A+RV+V +++ CY++L
Sbjct: 235 GIKYEIYGRPKHIYSIYKKMVNKHKDFSEIYDLLAVRVIV---------KSVKDCYAVLG 285
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT+ MH+ AE+G+AAH
Sbjct: 286 AVHTKWKPMPGRFKDYIAVPKVNGYQSLHTTIIGPGGKPLEIQIRTEAMHQVAEYGVAAH 345
Query: 514 WLYKE 518
W YKE
Sbjct: 346 WAYKE 350
>gi|422845570|ref|ZP_16892280.1| GTP diphosphokinase [Lactobacillus delbrueckii subsp. lactis DSM
20072]
gi|325684220|gb|EGD26396.1| GTP diphosphokinase [Lactobacillus delbrueckii subsp. lactis DSM
20072]
Length = 753
Score = 168 bits (426), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 138/450 (30%), Positives = 207/450 (46%), Gaps = 100/450 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+ A FA RAH GQ R +G PY+ H LA L DTV AG LHD V+D
Sbjct: 28 VESAYQFAARAHEGQTRASGQPYIVHPTQVAGTLANLGLDP-----DTVAAGFLHDTVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+ I+EEFG +VA +V GV++L N+ + H+E H
Sbjct: 83 TSVTNDDIKEEFGADVAFIVDGVTKL---NKYEYK-----------SHKEFLAENHRKML 128
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
I A+A++ +I LA RL + L+ L+P R++ A+ +
Sbjct: 129 I---------AMAKDLRVILVKLADRLHNMHTLEH---------LRPDKQRRIAAETLDI 170
Query: 283 WSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
++P +R+G I TI + +D SF H ++ + + V D + R
Sbjct: 171 YAPLADRLG----IGTI--------KWELEDMSF-----HYMNPEAYYKIVSMMD--AKR 211
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
+R ++ D A+ L ++L G++ +S
Sbjct: 212 SEREDYIKD-------------------AIDYLRGTLDSL------------GIKYDISG 240
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI+ KM K +++YD A+RV+V P ++ CY++L VH W P
Sbjct: 241 RPKHIYSIYKKMVNKHKDFNEIYDLLAVRVIV---------PTVKDCYAVLGAVHTKWKP 291
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ G F DYI PK +GYQSLHT + GP G LE+QIRT++MH+ AE+G+AAHW YK GN
Sbjct: 292 MPGRFKDYIAMPKANGYQSLHTTIIGPGGKPLEIQIRTEEMHKVAEYGVAAHWAYKR-GN 350
Query: 522 KLQSISSMDESDIEASSSLSKDTDDHNPLD 551
Q + D ++ + + D N D
Sbjct: 351 -FQGVDEKDGGALDIGREILELQKDSNNAD 379
>gi|197303672|ref|ZP_03168709.1| hypothetical protein RUMLAC_02399 [Ruminococcus lactaris ATCC
29176]
gi|197297192|gb|EDY31755.1| RelA/SpoT family protein [Ruminococcus lactaris ATCC 29176]
Length = 774
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 122/418 (29%), Positives = 199/418 (47%), Gaps = 95/418 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA K AH Q RK+G+PY+ H + G ILA L + +T+VAG+LHDVV+D
Sbjct: 60 IEKAYRIGKEAHKDQVRKSGEPYIIHPLWVGIILAEL-----EMDKETIVAGMLHDVVED 114
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L I EFG+EVA LV GV++L Q + ++L + N+R
Sbjct: 115 TEMTLDDITREFGEEVALLVDGVTKLG---------------QLSYSQDKLEVQAENLRK 159
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
++ A+A++ +I LA RL + L F Q ++ + ++
Sbjct: 160 MFL-------AMAKDIRVIIIKLADRL------HNMRTLEFMTEAKQ--KEKARETMDIY 204
Query: 284 SP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
+P R+G S+ +T DD S + V + D+ + +
Sbjct: 205 APIAQRLGISKI------------KTELDDLSLKYYQPEVYYQ-------LVKDLNARKT 245
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
+R +F+ + +K +++A I + + R
Sbjct: 246 EREEFVQQIVAEV-----SKHMENASI--------------------------KAKVYGR 274
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
+K +SI+ KM ++ + +VYD A+R++V +++ CY+ L ++H ++ PI
Sbjct: 275 VKHFFSIYKKMVNQNKTLDQVYDLFAVRIIV---------DSVKDCYAALGVIHEMYTPI 325
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 520
G F DYI PK + YQSLHT + GP G E+QIRT++MH+ AE+G+AAHW YKETG
Sbjct: 326 PGRFKDYIAMPKANMYQSLHTTLMGPAGQPFEIQIRTEEMHKTAEYGIAAHWKYKETG 383
>gi|408409949|ref|ZP_11181214.1| GTP pyrophosphokinase [Lactobacillus sp. 66c]
gi|407875894|emb|CCK83020.1| GTP pyrophosphokinase [Lactobacillus sp. 66c]
Length = 753
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 133/420 (31%), Positives = 197/420 (46%), Gaps = 99/420 (23%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+ A FA RAH GQ R +G PY+ H LA L DTV AG LHD V+D
Sbjct: 28 VESAYQFAARAHEGQTRASGQPYIVHPTQVAGTLANLGLDP-----DTVAAGFLHDTVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+ I+E+FG +VA +V GV++L N+ + H+E H
Sbjct: 83 TSVTNDDIKEKFGADVAFIVDGVTKL---NKYEYK-----------SHKEFLAENHRKML 128
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
I A+A++ +I LA RL + L+ L+P R++ A+ +
Sbjct: 129 I---------AMAKDLRVILVKLADRLHNMHTLEH---------LRPDKQRRIAAETLDI 170
Query: 283 WSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
++P +R+G I TI + +D SF H ++ + + V D + R
Sbjct: 171 YAPLADRLG----IGTI--------KWELEDMSF-----HYINPDEYYKIVSMMD--AKR 211
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
+R ++ D A+ L ++L G++ +S
Sbjct: 212 SEREGYIKD-------------------AIDYLKGTLDSL------------GIDYDISG 240
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI+ KM K +++YD A+RV+V P ++ CY++L VH W P
Sbjct: 241 RPKHIYSIYKKMVNKHKDFNEIYDLLAVRVIV---------PTVKDCYAVLGAVHTKWKP 291
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ G F DYI PK +GYQSLHT + GP G LE+QIRT++MHE AE+G+AAHW YK GN
Sbjct: 292 MPGRFKDYIAMPKANGYQSLHTTIIGPGGKPLEIQIRTKEMHEVAEYGVAAHWAYKR-GN 350
>gi|292670701|ref|ZP_06604127.1| GTP diphosphokinase [Selenomonas noxia ATCC 43541]
gi|292647647|gb|EFF65619.1| GTP diphosphokinase [Selenomonas noxia ATCC 43541]
Length = 746
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 134/452 (29%), Positives = 211/452 (46%), Gaps = 107/452 (23%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E+++KA +FA++AH GQ R +GD Y+ H ++ IL L +TV A +LHDVV
Sbjct: 31 EKIKKAYSFAEQAHRGQVRISGDAYIMHPLNVAYILTGLHLDD-----ETVCAALLHDVV 85
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNM 221
+D +L +E EFG + L+ GV++L I + + E++ +L N
Sbjct: 86 EDTHATLEEMEAEFGRNIMALIDGVTKLGRIEYMSK--------------EDV--KLENY 129
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLA 280
R ++ A+A++ +I LA RL + LK ED R++ +
Sbjct: 130 RKMFL-------AMAKDIRVIMIKLADRLHNMRTLKYMREDK---------RRRIAKETI 173
Query: 281 SMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILS 339
+++P NR+G S + V L R + + +E +
Sbjct: 174 EVYAPLANRLGIS---SIKVELEDLCLRYLEPEAYYALVEE----------------VKH 214
Query: 340 DRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTL 399
R++R +F+ L S+ E LE ++ +
Sbjct: 215 KRQERQEFI----------------------LDSIQKIHEKLEA---------ADIKAEI 243
Query: 400 SSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLW 459
R K YSI+ KM+R + ++++YD A+R++V +++ CY +L ++H +W
Sbjct: 244 KGRAKHFYSIYRKMKRDNKSVNEIYDLSAVRILVS---------SVKDCYGVLGVIHAMW 294
Query: 460 IPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET 519
PI G F DYI PK +GYQSLHT V G LE+QIRT+ MH +E G+AAHW YKE
Sbjct: 295 KPIPGRFKDYIAMPKSNGYQSLHTTVM-TRGYPLEIQIRTEAMHRISEFGVAAHWKYKEA 353
Query: 520 GNKLQSISSMDESDIEAS-----SSLSKDTDD 546
G +SI DE+D + S SL K+ DD
Sbjct: 354 G---RSIGVTDENDQKMSWLRQMVSLQKEYDD 382
>gi|335046678|ref|ZP_08539701.1| GTP diphosphokinase [Oribacterium sp. oral taxon 108 str. F0425]
gi|363896423|ref|ZP_09322974.1| hypothetical protein HMPREF9624_01718 [Oribacterium sp. ACB7]
gi|333760464|gb|EGL38021.1| GTP diphosphokinase [Oribacterium sp. oral taxon 108 str. F0425]
gi|361960709|gb|EHL13942.1| hypothetical protein HMPREF9624_01718 [Oribacterium sp. ACB7]
Length = 755
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 127/430 (29%), Positives = 199/430 (46%), Gaps = 94/430 (21%)
Query: 92 DVTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD 150
DV Y P + + KA AK H Q RK+G+PY+ H + ILA L + +
Sbjct: 30 DVRSYHPSEDLSMITKAYEVAKEQHKEQKRKSGEPYIIHPLCVAIILADL-----EMDKE 84
Query: 151 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 210
T+ AG+LHDVV+D +L +E+EF +VA LV GV++L+ +N L
Sbjct: 85 TIAAGLLHDVVEDTGMTLEEVEKEFNPDVATLVDGVTKLTKLN---------------LN 129
Query: 211 HEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
+++ + N+R ++ ++A++ +I LA RL L+ Q
Sbjct: 130 SDKVEMQAENLRKMFV-------SMAKDIRVIIIKLADRLH-----------NLRTLEYQ 171
Query: 271 IFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLE 330
SP R +R I S PL +R + +
Sbjct: 172 -------------SPEKRKEKARESLEIYS--PLADRLG------------------ISK 198
Query: 331 AVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTS 390
+ D LS + + +DLA +++A+ + I EE+
Sbjct: 199 IKIEMDDLSLKYLEPEVYYDLADKVHFKREAREDRINAIVEEVREHIEES---------- 248
Query: 391 YIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYS 450
G+E + R+K +SI+ KM ++ I ++YD A+R++V +++ CY+
Sbjct: 249 ---GIEANIKGRIKHFFSIYKKMVNQNKTIDQIYDLFAIRIIV---------ESVRDCYA 296
Query: 451 LLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGL 510
+L ++H+++ PI G F DYI PKP+ YQSLHT V G DG E+QIRT +MH AE G+
Sbjct: 297 VLGVIHKMYRPIPGRFKDYIAMPKPNMYQSLHTTVIGRDGVPFEIQIRTFEMHRTAEFGI 356
Query: 511 AAHWLYKETG 520
AAHW YKE G
Sbjct: 357 AAHWKYKEQG 366
>gi|418036575|ref|ZP_12674991.1| GTP diphosphokinase [Lactobacillus delbrueckii subsp. bulgaricus
CNCM I-1519]
gi|354687625|gb|EHE87705.1| GTP diphosphokinase [Lactobacillus delbrueckii subsp. bulgaricus
CNCM I-1519]
Length = 753
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 133/420 (31%), Positives = 198/420 (47%), Gaps = 99/420 (23%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+ A FA RAH GQ R +G PY+ H ILA L DTV AG LHD V+D
Sbjct: 28 VESAYQFAARAHEGQTRASGQPYIVHPTQVAGILANLGLDP-----DTVAAGFLHDTVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+ I+E+FG +VA +V GV++L N+ + H+E H
Sbjct: 83 TSVTNDDIKEKFGADVAFIVDGVTKL---NKYEYK-----------SHKEFLAENHRKML 128
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
I A+A++ +I LA RL + L+ L+P R++ A+ +
Sbjct: 129 I---------AMAKDLRVILVKLADRLHNMHTLEH---------LRPDKQRRIAAETLDI 170
Query: 283 WSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
++P +R+G I TI + +D SF H ++ + + V D + R
Sbjct: 171 YAPLADRLG----IGTI--------KWKLEDMSF-----HYMNPEAYYKIVSMMD--AKR 211
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
+R ++ D A+ L ++L G++ +S
Sbjct: 212 SEREGYIKD-------------------AIDYLRGTLDSL------------GIKYDISG 240
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI+ KM K +++YD A+RV+V P ++ CY++L VH W P
Sbjct: 241 RPKHIYSIYKKMVNKHKNFNEIYDLLAVRVIV---------PTVKDCYAVLGAVHTKWKP 291
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ G F DYI PK +GYQSLHT + GP G LE+QIRT++MH+ AE+G+AAHW YK GN
Sbjct: 292 MPGRFKDYIAMPKANGYQSLHTTIIGPGGKPLEIQIRTEEMHKVAEYGVAAHWAYKR-GN 350
>gi|253997766|ref|YP_003049829.1| (p)ppGpp synthetase I SpoT/RelA [Methylovorus glucosetrophus
SIP3-4]
gi|313199830|ref|YP_004038488.1| (p)ppGpp synthetase I SpoT/RelA [Methylovorus sp. MP688]
gi|253984445|gb|ACT49302.1| (p)ppGpp synthetase I, SpoT/RelA [Methylovorus glucosetrophus
SIP3-4]
gi|312439146|gb|ADQ83252.1| (p)ppGpp synthetase I, SpoT/RelA [Methylovorus sp. MP688]
Length = 740
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 141/461 (30%), Positives = 211/461 (45%), Gaps = 104/461 (22%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
EQV A F+ AH GQ RK+G+PY+TH + ILA L V T+VA +LHDVV
Sbjct: 44 EQVWAAYRFSDMAHTGQLRKSGEPYITHPVSVACILAEL-----HMDVPTLVAALLHDVV 98
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNM 221
+D + + E FG +VA+LV G+S+L +I + T E N
Sbjct: 99 EDTGVTTQEVSERFGKQVAELVDGLSKLD----------KIKFSTETEAQAE------NF 142
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLAS 281
R + A++Q+ +I LA RL + V+ P+ R+ +
Sbjct: 143 RKMLL-------AMSQDVRVILVKLADRLHNMS--------TLGVMTPEKRRRTARETLE 187
Query: 282 MWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSD 340
+++P NR+G + + +D SF +H+ M+ +V+ IL+
Sbjct: 188 IYAPIANRLGLNAIYQEL------------EDLSF----KHLYPMR---YSVISKAILAA 228
Query: 341 RRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLS 400
R R + + + L A E L E+ I E ++
Sbjct: 229 RGNRKEVVGKI----------------------LDAIRERL-GEMHI--------EAEVT 257
Query: 401 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 460
R K LYSI+ KM K V ++YD R++V D + CY L ++H L+
Sbjct: 258 GREKHLYSIYRKMTGKTVTFSQIYDIYGFRIIVKD---------LSSCYLALGVLHGLYK 308
Query: 461 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 520
PI G+F DYI PK +GYQSLHT + GP G+ +EVQIR+++MH A+ G+AAHWLYK T
Sbjct: 309 PIPGKFKDYIAIPKANGYQSLHTTLFGPFGTPIEVQIRSREMHNIADAGVAAHWLYKTTD 368
Query: 521 NKLQSISSMDES------DIEASSSLSKDTDDHNPLDTDLF 555
L + DI++ S+ S + +H DLF
Sbjct: 369 AHLTELQQQTHQWLQRLLDIQSESTDSLEFLEH--FKVDLF 407
>gi|166031162|ref|ZP_02233991.1| hypothetical protein DORFOR_00848 [Dorea formicigenerans ATCC
27755]
gi|166029009|gb|EDR47766.1| RelA/SpoT family protein [Dorea formicigenerans ATCC 27755]
Length = 803
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 125/437 (28%), Positives = 212/437 (48%), Gaps = 95/437 (21%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + Q++KA AK+AH Q RK+G+PY+ H + ILA L + +T++A
Sbjct: 82 HPSADVTQIEKAYNLAKKAHGDQKRKSGEPYIIHPLWVAIILADL-----EMDKETIIAA 136
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
+LHDVV+D I+EEFG+EVA LV GV++L + ++L
Sbjct: 137 LLHDVVEDTRIGEDYIKEEFGEEVALLVDGVTKLGRV---------------AYSADKLE 181
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
+ N+R ++ A+A++ +I LA RL + L F + P ++
Sbjct: 182 LQAENLRKMFL-------AMAKDIRVIIIKLADRL------HNMRTLQF--MTPAKQQEK 226
Query: 276 RADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVP 334
+ +++P R+G S+ +T DD LS+K L+ V
Sbjct: 227 ARETMDIYAPIAGRLGISKI------------KTELDD----------LSLK-YLKPDVF 263
Query: 335 FDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPG 394
FD+++ R K+ + ++V + + + + G
Sbjct: 264 FDLVNQINAR--------KTEREEFVQQIVDEVSMHMKN-------------------AG 296
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
++ ++ R+K +SI+ KM +D + ++YD A+R++V +++ CY+ L I
Sbjct: 297 IKADVNGRVKHFFSIYKKMVNQDKTVDQIYDLFAVRIIV---------DSVKDCYAALGI 347
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
+H ++ PI G F DYI PKP+ YQSLHT + G E+QIRTQ+MH+ AE+G+AAHW
Sbjct: 348 IHEIYTPIPGRFKDYIAMPKPNMYQSLHTTLMSSIGQPFEIQIRTQEMHKTAEYGIAAHW 407
Query: 515 LYKETGNKLQSISSMDE 531
YKE+G + + + +E
Sbjct: 408 KYKESGGSKKGVMAEEE 424
>gi|313123577|ref|YP_004033836.1| GTP pyrophosphokinase [Lactobacillus delbrueckii subsp. bulgaricus
ND02]
gi|312280140|gb|ADQ60859.1| GTP pyrophosphokinase [Lactobacillus delbrueckii subsp. bulgaricus
ND02]
Length = 753
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 137/450 (30%), Positives = 208/450 (46%), Gaps = 100/450 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+ A FA RAH GQ R +G PY+ H LA L DTV AG LHD V+D
Sbjct: 28 VESAYQFAARAHEGQTRASGQPYIVHPTQVAGTLANLGLDP-----DTVAAGFLHDTVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+ I+E+FG +VA +V GV++L N+ + H+E H
Sbjct: 83 TSVTNDDIKEKFGADVAFIVDGVTKL---NKYEYK-----------SHKEFLAENHRKML 128
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
I A+A++ +I LA RL + L+ L+P R++ A+ +
Sbjct: 129 I---------AMAKDLRVILVKLADRLHNMHTLEH---------LRPDKQRRIAAETLDI 170
Query: 283 WSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
++P +R+G I TI + +D SF H ++ ++ + V D + R
Sbjct: 171 YAPLADRLG----IGTI--------KWELEDMSF-----HYMNPEEYYKIVSMMD--AKR 211
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
+R ++ D A+ L ++L G++ +S
Sbjct: 212 SEREDYIKD-------------------AIDYLRGTLDSL------------GIKYDISG 240
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI+ KM K +++YD A+RV+V P ++ CY++L VH W P
Sbjct: 241 RPKHIYSIYKKMVNKHKDFNEIYDLLAVRVIV---------PTVKDCYAVLGAVHTKWKP 291
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ G F DYI PK +GYQSLHT + GP G LE+QIRT++MH+ AE+G+AAHW YK GN
Sbjct: 292 MPGRFKDYIAMPKANGYQSLHTTIIGPGGKPLEIQIRTEEMHKVAEYGVAAHWAYKR-GN 350
Query: 522 KLQSISSMDESDIEASSSLSKDTDDHNPLD 551
Q + D ++ + + D N D
Sbjct: 351 -FQGVDEKDGGALDIGREILELQKDSNNAD 379
>gi|104773939|ref|YP_618919.1| GTP pyrophosphokinase [Lactobacillus delbrueckii subsp. bulgaricus
ATCC 11842]
gi|103423020|emb|CAI97706.1| GTP pyrophosphokinase [Lactobacillus delbrueckii subsp. bulgaricus
ATCC 11842]
Length = 753
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 133/420 (31%), Positives = 198/420 (47%), Gaps = 99/420 (23%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+ A FA RAH GQ R +G PY+ H ILA L DTV AG LHD V+D
Sbjct: 28 VESAYQFAARAHEGQTRASGQPYIVHPTQVAGILANLGLDP-----DTVAAGFLHDTVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+ I+E+FG +VA +V GV++L N+ + H+E H
Sbjct: 83 TSVTNDDIKEKFGADVAFIVDGVTKL---NKYEYK-----------SHKEFLAENHRKML 128
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
I A+A++ +I LA RL + L+ L+P R++ A+ +
Sbjct: 129 I---------AMAKDLRVILVKLADRLHNMHTLEH---------LRPDKQRRIAAETLDI 170
Query: 283 WSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
++P +R+G I TI + +D SF H ++ + + V D + R
Sbjct: 171 YAPLADRLG----IGTI--------KWKLEDMSF-----HYMNPEAYYKIVSMMD--AKR 211
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
+R ++ D A+ L ++L G++ +S
Sbjct: 212 SEREGYIKD-------------------AIDYLRGTLDSL------------GIKYDISG 240
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI+ KM K +++YD A+RV+V P ++ CY++L VH W P
Sbjct: 241 RPKHIYSIYKKMVNKHKNFNEIYDLLAVRVIV---------PTVKDCYAVLGAVHTKWKP 291
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ G F DYI PK +GYQSLHT + GP G LE+QIRT++MH+ AE+G+AAHW YK GN
Sbjct: 292 MPGRFKDYIAMPKANGYQSLHTTIIGPGGKPLEIQIRTEEMHKVAEYGVAAHWAYKR-GN 350
>gi|339441909|ref|YP_004707914.1| guanosine polyphosphate pyrophosphohydrolase/synthetases
[Clostridium sp. SY8519]
gi|338901310|dbj|BAK46812.1| guanosine polyphosphate pyrophosphohydrolase/synthetases
[Clostridium sp. SY8519]
Length = 779
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 129/419 (30%), Positives = 202/419 (48%), Gaps = 95/419 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA A AH GQ RK+G+ Y+ H + ILA L + +T+VAG+LHDV +D
Sbjct: 55 VEKAYHIAANAHKGQVRKSGEEYIIHPLCVAIILADL-----EMDKETIVAGLLHDVAED 109
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L + E+F DEVA LV GV++L NQL +I V + N+R
Sbjct: 110 TGMTLEELAEDFNDEVALLVDGVTKL---NQLSYDADKIEV------------QAENLRK 154
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
++ A+A++ +I LA RL + L F ++P+ ++ + ++
Sbjct: 155 MFL-------AMAKDIRVIIIKLADRL------HNMRTLQF--MKPEKQKEKARETMEIY 199
Query: 284 SP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
+P R+G S S+K V + LS +
Sbjct: 200 APIAQRLGIS-------------------------------SIK------VELEDLSLKY 222
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
+ +DL + +KK + DA + +AL K++ ST +E T+ R
Sbjct: 223 LEPEAYYDLVEKIALRKKER---DAYV---------DALVKQVK-STIAAADIEATVYGR 269
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K +SI+ KM +D + ++YD A+R++V D ++ CY+ L ++H + P+
Sbjct: 270 AKHFFSIYKKMVNQDKTLDQIYDLFAIRIIVKD---------VKDCYAALGVIHEHYTPV 320
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
G F DYI PKP+ YQSLHT + GP+G E+QIRT++MH E+G+AAHW YKE N
Sbjct: 321 PGRFKDYIAMPKPNMYQSLHTTLMGPNGQPFEIQIRTEEMHRTCEYGIAAHWKYKEANN 379
>gi|385815572|ref|YP_005851963.1| ppGpp synthetase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
gi|325125609|gb|ADY84939.1| ppGpp synthetase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
Length = 738
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 132/420 (31%), Positives = 196/420 (46%), Gaps = 99/420 (23%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+ A FA RAH GQ R +G PY+ H I LA L DTV AG LHD V+D
Sbjct: 13 VESAYQFAARAHEGQTRASGQPYIVHPIQVAGTLANLGLDP-----DTVAAGFLHDTVED 67
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+ I+E+FG +VA +V GV++L+ H+E H
Sbjct: 68 TSVTNDDIKEKFGADVAFIVDGVTKLNKYE--------------YKSHKEFLAENHRKML 113
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
I A+A++ +I LA RL + L+ L+P R++ A+ +
Sbjct: 114 I---------AMAKDLRVILVKLADRLHNMHTLEH---------LRPDKQRRIAAETLDI 155
Query: 283 WSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
++P +R+G I TI + +D SF H ++ + + V D + R
Sbjct: 156 YAPLADRLG----IGTI--------KWKLEDMSF-----HYMNPEAYYKIVSMMD--AKR 196
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
+R ++ D A+ L ++L G++ +S
Sbjct: 197 SEREGYIKD-------------------AIDYLRGTLDSL------------GIKYDISG 225
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI+ KM K +++YD A+RV+V P ++ CY++L VH W P
Sbjct: 226 RPKHIYSIYKKMVNKHKNFNEIYDLLAVRVIV---------PTVKDCYAVLGAVHTKWKP 276
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ G F DYI PK +GYQSLHT + GP G LE+QIRT++MH+ AE+G+AAHW YK GN
Sbjct: 277 MPGRFKDYIAMPKANGYQSLHTTIIGPGGKPLEIQIRTEEMHKVAEYGVAAHWAYKR-GN 335
>gi|269792823|ref|YP_003317727.1| (p)ppGpp synthetase I SpoT/RelA [Thermanaerovibrio acidaminovorans
DSM 6589]
gi|269100458|gb|ACZ19445.1| (p)ppGpp synthetase I, SpoT/RelA [Thermanaerovibrio acidaminovorans
DSM 6589]
Length = 756
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 129/426 (30%), Positives = 201/426 (47%), Gaps = 98/426 (23%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
++ +A+ FA AH Q R +G+PY+ H I ILA + V+T+ A +LHDV++
Sbjct: 58 KLGEALVFAANAHREQRRHSGEPYIVHSISVAAILADM-----GLDVETLSAALLHDVLE 112
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELAD-RLHNM 221
D + FG+ V +V GV++L G L + + D + N+
Sbjct: 113 DTEVGKEEMLSRFGEGVLTMVDGVTKL-----------------GKLAFKSMEDYQAENL 155
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLA 280
R ++ + +A++ ++ LA RL + L+A D + + + ++ A LA
Sbjct: 156 RKMFLV-------MAKDIRVVLIKLADRLHNMRTLQAHRRDKQITIAKETL--EIYAPLA 206
Query: 281 SMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSD 340
+R+G + E ++DL ++ DI +
Sbjct: 207 ------HRLGI-----------------------YNVKRE----LEDLCFKILEPDIYYE 233
Query: 341 RRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLS 400
R+R + K+ + I +L + L++E G+E LS
Sbjct: 234 IRRRVR--------------KKLPEREAIIKQALDVLQGKLKEE---------GIEAYLS 270
Query: 401 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 460
R K YSI+ KMRRK++ + ++YD ALRV+VG + CY +L +VH +W
Sbjct: 271 GRPKHFYSIYEKMRRKNLSLDQLYDLLALRVIVG---------TVAECYQVLGLVHTIWK 321
Query: 461 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 520
PI G+FDDYI NPK + YQSLHT V GP G LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 322 PIPGQFDDYIANPKSNMYQSLHTTVLGPSGEPLEVQIRTWEMHWLAEYGVAAHWHYKEGK 381
Query: 521 NKLQSI 526
++ I
Sbjct: 382 RRVDQI 387
>gi|427405631|ref|ZP_18895836.1| RelA/SpoT family protein [Selenomonas sp. F0473]
gi|425708472|gb|EKU71511.1| RelA/SpoT family protein [Selenomonas sp. F0473]
Length = 742
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 132/452 (29%), Positives = 212/452 (46%), Gaps = 107/452 (23%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
+++++A FA++AH GQ R +G+ Y+ H ++ IL L +T+ A +LHDVV
Sbjct: 28 DKIERAYRFAEKAHRGQARISGEAYIIHPLNVAYILTGLHMDD-----ETICAALLHDVV 82
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNM 221
+D ++ +EE FG +A L+ GV++L I + + E++ +L N
Sbjct: 83 EDTHATIEEMEELFGKNIAALIDGVTKLGRIQYMSK--------------EDV--QLENY 126
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLA 280
R ++ A+A++ +I LA RL + LK ED +++ +
Sbjct: 127 RKMFL-------AMAKDIRVIMIKLADRLHNMRTLKYMREDK---------RQRIAHETL 170
Query: 281 SMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILS 339
+++P NR+G S + L R + +T +E +
Sbjct: 171 EVYAPLANRLGIS---NIKIELEDLCLRYLEPEAYYTLVEE----------------VKH 211
Query: 340 DRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTL 399
R++R +F+ L S+ +E LE G+E +
Sbjct: 212 KRQERQEFI----------------------LDSIRQIKEKLED---------AGIEAEI 240
Query: 400 SSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLW 459
R K YSI+ KM+R + ++++YD A+RV+V +++ CY +L ++H +W
Sbjct: 241 KGRAKHFYSIYRKMKRDNKSVNEIYDLSAVRVLVS---------SVKDCYGVLGVIHAMW 291
Query: 460 IPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET 519
PI G F DYI PK +GYQSLHT V G LE+QIRT MH +E G+AAHW YKE
Sbjct: 292 KPIPGRFKDYIAMPKSNGYQSLHTTVM-THGDPLEIQIRTHAMHRISEFGVAAHWKYKEA 350
Query: 520 GNKLQSISSMDESDIEAS-----SSLSKDTDD 546
G +S + DESD + S SL K+ DD
Sbjct: 351 G---KSTGATDESDQKMSWLRQMVSLQKEYDD 379
>gi|422344010|ref|ZP_16424937.1| hypothetical protein HMPREF9432_00997 [Selenomonas noxia F0398]
gi|355377758|gb|EHG24967.1| hypothetical protein HMPREF9432_00997 [Selenomonas noxia F0398]
Length = 743
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 133/452 (29%), Positives = 211/452 (46%), Gaps = 107/452 (23%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E+++KA +FA++AH GQ R +GD Y+ H ++ IL L +T+ A +LHDVV
Sbjct: 28 EKIKKAYSFAEQAHRGQVRISGDAYIMHPLNVAYILTGLHLDD-----ETICAALLHDVV 82
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNM 221
+D +L +E EFG + L+ GV++L I + + E++ +L N
Sbjct: 83 EDTHATLEEMEAEFGRNIMALIDGVTKLGRIEYMSK--------------EDV--KLENY 126
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLA 280
R ++ A+A++ +I LA RL + LK ED R++ +
Sbjct: 127 RKMFL-------AMAKDIRVIMIKLADRLHNMRTLKYMREDK---------RRRIAKETI 170
Query: 281 SMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILS 339
+++P NR+G S + V L R + + +E +
Sbjct: 171 EVYAPLANRLGIS---SIKVELEDLCLRYLEPEAYYALVEE----------------VKH 211
Query: 340 DRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTL 399
R++R +F+ L S+ E LE ++ +
Sbjct: 212 KRQERQEFI----------------------LDSIQKIHEKLEA---------ADIKAEI 240
Query: 400 SSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLW 459
R K YSI+ KM+R + ++++YD A+R++V +++ CY +L ++H +W
Sbjct: 241 KGRAKHFYSIYRKMKRDNKSVNEIYDLSAVRILVS---------SVKDCYGVLGVIHAMW 291
Query: 460 IPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET 519
PI G F DYI PK +GYQSLHT V G LE+QIRT+ MH +E G+AAHW YKE
Sbjct: 292 KPIPGRFKDYIAMPKSNGYQSLHTTVM-TRGYPLEIQIRTEAMHRISEFGVAAHWKYKEA 350
Query: 520 GNKLQSISSMDESDIEAS-----SSLSKDTDD 546
G +SI DE+D + S SL K+ DD
Sbjct: 351 G---RSIGVTDENDQKMSWLRQMVSLQKEYDD 379
>gi|256619448|ref|ZP_05476294.1| RelA/SpoT protein [Enterococcus faecalis ATCC 4200]
gi|256598975|gb|EEU18151.1| RelA/SpoT protein [Enterococcus faecalis ATCC 4200]
Length = 737
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 131/419 (31%), Positives = 200/419 (47%), Gaps = 98/419 (23%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E VQKA+ +A++AH GQ R++G+PY+ H I ILA L TV G LHDVV
Sbjct: 26 ELVQKALTYAEKAHEGQVRQSGEPYIIHPIQVAGILAELHMDP-----HTVATGFLHDVV 80
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNM 221
+D +L ++EEFG+++A LV GV++L I + H E+LA+ M
Sbjct: 81 EDTDVTLDDLKEEFGEDIAMLVDGVTKLGKIK--YKSHE-----------EQLAENYRKM 127
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLA 280
A+AQ+ +I LA RL + LK ED R++ +
Sbjct: 128 LL----------AMAQDLRVIMVKLADRLHNMRTLKHLREDKQ---------RRIAQETL 168
Query: 281 SMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILS 339
+++P +R+G S RI + L R + ++ + + L++ S
Sbjct: 169 EIYAPLAHRLGIS-RIKWELEDTAL--RYINPNQYYRIVN--------LMQ--------S 209
Query: 340 DRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTL 399
R +R ++ A+ V+D +A L E +
Sbjct: 210 KRDEREAYV------------AEAVEDIRLATEDLEIYAE-------------------I 238
Query: 400 SSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLW 459
R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L +H W
Sbjct: 239 YGRPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLGAIHTRW 289
Query: 460 IPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
P+ G F DYI PK + YQS+HT V GP G+ +EVQIRT +MH+ AE G+AAHW YKE
Sbjct: 290 TPMPGRFKDYIAMPKANMYQSIHTTVIGPKGNPVEVQIRTHEMHQIAEFGVAAHWAYKE 348
>gi|418029539|ref|ZP_12668077.1| GTP diphosphokinase [Lactobacillus delbrueckii subsp. bulgaricus
CNCM I-1632]
gi|354689845|gb|EHE89818.1| GTP diphosphokinase [Lactobacillus delbrueckii subsp. bulgaricus
CNCM I-1632]
Length = 753
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 138/448 (30%), Positives = 208/448 (46%), Gaps = 103/448 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+ A FA RAH GQ R +G PY+ H LA L DTV AG LHD V+D
Sbjct: 28 VESAYQFAARAHEGQTRASGQPYIVHPTQVAGTLANLGLDP-----DTVAAGFLHDTVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+ I+E+FG +VA +V GV++L N+ + H+E H
Sbjct: 83 TSVTNDDIKEKFGADVAFIVDGVTKL---NKYEYK-----------SHKEFLAENHRKML 128
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
I A+A++ +I LA RL + L+ L+P R++ A+ +
Sbjct: 129 I---------AMAKDLRVILVKLADRLHNMHTLEH---------LRPDKQRRIAAETLDI 170
Query: 283 WSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
++P +R+G I TI + +D SF H ++ + + V D + R
Sbjct: 171 YAPLADRLG----IGTI--------KWKLEDMSF-----HYMNPEAYYKIVYMMD--AKR 211
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
+R ++ D A+ L ++L G++ +S
Sbjct: 212 SEREGYIKD-------------------AIDYLRGTLDSL------------GIKYDISG 240
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI+ KM K +++YD A+RV+V P ++ CY++L VH W P
Sbjct: 241 RPKHIYSIYKKMVNKHKNFNEIYDLLAVRVIV---------PTVKDCYAVLGAVHTKWKP 291
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ G F DYI PK +GYQSLHT + GP G LE+QIRT++MH+ AE+G+AAHW YK GN
Sbjct: 292 MPGRFKDYIAMPKANGYQSLHTTIIGPGGKPLEIQIRTEEMHKVAEYGVAAHWAYKR-GN 350
Query: 522 KLQSISSMDESDIEASS---SLSKDTDD 546
Q + + ++ S L KD+ D
Sbjct: 351 -FQGVDEKEGGALDISREILELQKDSSD 377
>gi|313895497|ref|ZP_07829053.1| GTP diphosphokinase [Selenomonas sp. oral taxon 137 str. F0430]
gi|320528880|ref|ZP_08029972.1| GTP diphosphokinase [Selenomonas artemidis F0399]
gi|402302377|ref|ZP_10821491.1| GTP diphosphokinase [Selenomonas sp. FOBRC9]
gi|312975623|gb|EFR41082.1| GTP diphosphokinase [Selenomonas sp. oral taxon 137 str. F0430]
gi|320138510|gb|EFW30400.1| GTP diphosphokinase [Selenomonas artemidis F0399]
gi|400380596|gb|EJP33410.1| GTP diphosphokinase [Selenomonas sp. FOBRC9]
Length = 742
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 131/454 (28%), Positives = 208/454 (45%), Gaps = 101/454 (22%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P + ++++A FA++AH GQ R +G+ Y+ H +H IL L +T+ A +
Sbjct: 23 PDADTAKIERAYQFAEKAHRGQARISGEAYIIHPLHVAYILTGLHMDD-----ETICAAL 77
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELAD 216
LHDVV+D ++ +EE FG +A L+ GV++L I + + E++
Sbjct: 78 LHDVVEDTHATIEEMEELFGKNIAVLIDGVTKLGRIQYMSK--------------EDV-- 121
Query: 217 RLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKM 275
+L N R ++ A+A++ +I LA RL + LK ED +++
Sbjct: 122 QLENYRKMFL-------AMAKDIRVIMIKLADRLHNMRTLKYMREDK---------RQRI 165
Query: 276 RADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVP 334
+ +++P NR+G S + L R D + +E
Sbjct: 166 AHETLEVYAPLANRLGIS---NIKIELEDLCLRYLEPDAYYALVEE-------------- 208
Query: 335 FDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPG 394
+ RR+R F+ L S+ E LE G
Sbjct: 209 --VKHKRRERQAFI----------------------LDSIRQIREKLED---------AG 235
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+E + R K YSI+ KM+R + + ++YD A+RV+V +++ CY +L +
Sbjct: 236 IEAEIKGRAKHFYSIYRKMKRDNKSVSEIYDLSAVRVLVS---------SVKDCYGVLGV 286
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
+H +W PI G F DYI PK +GYQSLHT V G LE+QIRT MH +E G+AAHW
Sbjct: 287 IHAMWKPIPGRFKDYIAMPKSNGYQSLHTTVM-TQGDPLEIQIRTHAMHRVSEFGVAAHW 345
Query: 515 LYKETGNKLQSISSMDE--SDIEASSSLSKDTDD 546
YKE+G + + + D+ S + SL K+ DD
Sbjct: 346 KYKESGKSIGAGGAADQKMSWLRQMVSLQKEYDD 379
>gi|428201543|ref|YP_007080132.1| RelA/SpoT family (p)ppGpp synthetase [Pleurocapsa sp. PCC 7327]
gi|427978975|gb|AFY76575.1| (p)ppGpp synthetase, RelA/SpoT family [Pleurocapsa sp. PCC 7327]
Length = 765
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 137/418 (32%), Positives = 193/418 (46%), Gaps = 99/418 (23%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A FA H GQ+RK+G+PY+ H I +L L G +A+ + AG LHDVV+D
Sbjct: 51 RAFNFAYELHEGQYRKSGEPYIAHPIAVASLLRDL---GGDKAM--IAAGFLHDVVEDTD 105
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTIY 225
+L IEE FG EV +LV GV++LS + N + T E N R ++
Sbjct: 106 VTLEEIEERFGAEVRQLVEGVTKLS----------KFNFSSKTERQAE------NFRRMF 149
Query: 226 ALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASMWS 284
A+A++ +I LA RL + L+ L+P+ R + + +++
Sbjct: 150 L-------AMAKDIRVIIVKLADRLHNMRTLEH---------LKPEKQRSIALETREIFA 193
Query: 285 P-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRK 343
P NR+G R + +D +F + L A K
Sbjct: 194 PLANRLGIGRL------------KWELEDLAFKYLEPEAYRAVQSLVA----------EK 231
Query: 344 RTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEV-TLSSR 402
RT L K SE ++ LTSL G+ V + R
Sbjct: 232 RTDREARLEKVSEMLRER---------LTSL-------------------GINVREIKGR 263
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K LY I+ KM+R+ H++YD ALR++V K+ CY L +VH + PI
Sbjct: 264 PKHLYGIYQKMQRQQKEFHEIYDIAALRIIVDSKDE---------CYRALAVVHDAFRPI 314
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 520
G F DYI PKP+ YQSLHT V G +G +EVQIRT +MH AE+G+AAHW YKETG
Sbjct: 315 PGRFKDYIGLPKPNRYQSLHTTVVGLNGRPMEVQIRTLEMHHIAEYGIAAHWKYKETG 372
>gi|116513948|ref|YP_812854.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
gi|116093263|gb|ABJ58416.1| Guanosine polyphosphate pyrophosphohydrolase/synthetase
[Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
Length = 754
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 134/419 (31%), Positives = 197/419 (47%), Gaps = 96/419 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+ A FA RAH GQ R +G PY+ H LA L DTV AG LHD V+D
Sbjct: 28 VESAYQFAARAHEGQTRASGQPYIVHPTQVAGTLANLGLDP-----DTVAAGFLHDTVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+ I+E+FG +VA +V GV++L N+ + H+E H
Sbjct: 83 TSVTNDDIKEKFGADVAFIVDGVTKL---NKYEYK-----------SHKEFLAENHRKML 128
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
I A+A++ +I LA RL LE L L+P R++ A+ ++
Sbjct: 129 I---------AMAKDLRVILVKLADRLHNMHT---LEHL----LRPDKQRRIAAETLDIY 172
Query: 284 SP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
+P +R+G I TI + +D SF H ++ + + V D + R
Sbjct: 173 APLADRLG----IGTI--------KWKLEDMSF-----HYMNPEAYYKIVSMMD--AKRS 213
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
+R ++ D A+ L ++L G++ +S R
Sbjct: 214 EREGYIKD-------------------AIDYLRGTLDSL------------GIKYDISGR 242
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K +YSI+ KM K +++YD A+RV+V P ++ CY++L VH W P+
Sbjct: 243 PKHIYSIYKKMVNKHKNFNEIYDLLAVRVIV---------PTVKDCYAVLGAVHTKWKPM 293
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
G F DYI PK +GYQSLHT + GP G LE+QIRT++MH+ AE+G+AAHW YK GN
Sbjct: 294 PGRFKDYIAMPKANGYQSLHTTIIGPGGKPLEIQIRTEEMHKVAEYGVAAHWAYKR-GN 351
>gi|340753531|ref|ZP_08690310.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Fusobacterium sp. 2_1_31]
gi|422316887|ref|ZP_16398262.1| RelA/SpoT family protein [Fusobacterium periodonticum D10]
gi|229423101|gb|EEO38148.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Fusobacterium sp. 2_1_31]
gi|404590479|gb|EKA92877.1| RelA/SpoT family protein [Fusobacterium periodonticum D10]
Length = 725
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 122/423 (28%), Positives = 197/423 (46%), Gaps = 100/423 (23%)
Query: 99 FNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILH 158
++ ++++ A+AFA+ +H GQ+RK+GD Y+ H + +IL + K DTVVAG+LH
Sbjct: 19 YDFDKLKLALAFAEESHQGQYRKSGDDYIIHPVEVAKILMDM-----KMDTDTVVAGLLH 73
Query: 159 DVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRL 218
DVV+D + I+ FGD VA LV GV++L + GT E
Sbjct: 74 DVVEDTLIPIADIKYNFGDTVAVLVDGVTKLKALPN------------GTKNQAE----- 116
Query: 219 HNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRAD 278
N+R + A+A+ +I LA RL + L F ++P+ + + +
Sbjct: 117 -NIRKMIL-------AMAENIRVILIKLADRL------HNMRTLKF--MKPEKQQAISKE 160
Query: 279 LASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFD-EHVLSMKDLLEAVVPFD 336
+++P +R+G ++ ++ +D SF+ E L +K L+E
Sbjct: 161 TLDIYAPLAHRLGMAKI------------KSELEDLSFSYLHHEEYLEIKRLVE------ 202
Query: 337 ILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGME 396
+ + +R ++ + ++ + L L G++
Sbjct: 203 --NTKEERKDYIENFIRTMKR------------TLVDL-------------------GLK 229
Query: 397 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 456
+ R K YSI+ KM +K +YD +RV+V DK CY +L IVH
Sbjct: 230 AEVKGRFKHFYSIYKKMYQKGKEFDDIYDLMGVRVIVEDK---------AACYHILGIVH 280
Query: 457 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 516
+ P+ G F DYI PK + YQS+HT + GP G +E+QIRT+ M + AE G+AAHW Y
Sbjct: 281 SQYTPVPGRFKDYIAVPKSNNYQSIHTTIVGPLGKFIEIQIRTKDMDDIAEEGIAAHWNY 340
Query: 517 KET 519
KE
Sbjct: 341 KEN 343
>gi|257416410|ref|ZP_05593404.1| RelA/SpoT protein [Enterococcus faecalis ARO1/DG]
gi|422695354|ref|ZP_16753342.1| GTP diphosphokinase [Enterococcus faecalis TX4244]
gi|257158238|gb|EEU88198.1| RelA/SpoT protein [Enterococcus faecalis ARO1/DG]
gi|315147637|gb|EFT91653.1| GTP diphosphokinase [Enterococcus faecalis TX4244]
Length = 737
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 131/419 (31%), Positives = 200/419 (47%), Gaps = 98/419 (23%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E VQKA+ +A++AH GQ R++G+PY+ H I ILA L TV G LHDVV
Sbjct: 26 ELVQKALTYAEKAHEGQVRQSGEPYIIHPIQVAGILAELHMDP-----HTVATGFLHDVV 80
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNM 221
+D +L ++EEFG+++A LV GV++L I + H E+LA+ M
Sbjct: 81 EDTDVTLDDLKEEFGEDIAMLVDGVTKLGKIK--YKSHE-----------EQLAENHRKM 127
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLA 280
A+AQ+ +I LA RL + LK ED R++ +
Sbjct: 128 LL----------AMAQDLRVIMVKLADRLHNMRTLKHLREDKQ---------RRIAQETL 168
Query: 281 SMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILS 339
+++P +R+G S RI + L R + ++ + + L++ S
Sbjct: 169 EIYAPLAHRLGIS-RIKWELEDTAL--RYINPNQYYRIVN--------LMQ--------S 209
Query: 340 DRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTL 399
R +R ++ A+ V+D +A L E +
Sbjct: 210 KRDEREAYV------------AEAVEDIRLATEDLEIYAE-------------------I 238
Query: 400 SSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLW 459
R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L +H W
Sbjct: 239 YGRPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLGAIHTRW 289
Query: 460 IPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
P+ G F DYI PK + YQS+HT V GP G+ +EVQIRT +MH+ AE G+AAHW YKE
Sbjct: 290 TPMPGRFKDYIAMPKANMYQSIHTTVIGPKGNPVEVQIRTHEMHQIAEFGVAAHWAYKE 348
>gi|257090255|ref|ZP_05584616.1| RelA/SpoT family protein [Enterococcus faecalis CH188]
gi|312902753|ref|ZP_07761957.1| GTP diphosphokinase [Enterococcus faecalis TX0635]
gi|422690313|ref|ZP_16748370.1| GTP diphosphokinase [Enterococcus faecalis TX0630]
gi|422702134|ref|ZP_16759974.1| GTP diphosphokinase [Enterococcus faecalis TX1342]
gi|256999067|gb|EEU85587.1| RelA/SpoT family protein [Enterococcus faecalis CH188]
gi|310633807|gb|EFQ17090.1| GTP diphosphokinase [Enterococcus faecalis TX0635]
gi|315169383|gb|EFU13400.1| GTP diphosphokinase [Enterococcus faecalis TX1342]
gi|315576684|gb|EFU88875.1| GTP diphosphokinase [Enterococcus faecalis TX0630]
Length = 737
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 131/419 (31%), Positives = 200/419 (47%), Gaps = 98/419 (23%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E VQKA+ +A++AH GQ R++G+PY+ H I ILA L TV G LHDVV
Sbjct: 26 ELVQKALTYAEKAHEGQVRQSGEPYIIHPIQVAGILAELHMDP-----HTVATGFLHDVV 80
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNM 221
+D +L ++EEFG+++A LV GV++L I + H E+LA+ M
Sbjct: 81 EDTDVTLDDLKEEFGEDIAMLVDGVTKLGKIK--YKSHE-----------EQLAENHRKM 127
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLA 280
A+AQ+ +I LA RL + LK ED R++ +
Sbjct: 128 LL----------AMAQDLRVIMVKLADRLHNMRTLKHLREDKQ---------RRIAQETL 168
Query: 281 SMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILS 339
+++P +R+G S RI + L R + ++ + + L++ S
Sbjct: 169 EIYAPLAHRLGIS-RIKWELEDTAL--RYINPNQYYRIVN--------LMQ--------S 209
Query: 340 DRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTL 399
R +R ++ A+ V+D +A L E +
Sbjct: 210 KRDEREAYV------------AEAVEDIRLATEDLEIYAE-------------------I 238
Query: 400 SSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLW 459
R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L +H W
Sbjct: 239 YGRPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLGAIHTRW 289
Query: 460 IPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
P+ G F DYI PK + YQS+HT V GP G+ +EVQIRT +MH+ AE G+AAHW YKE
Sbjct: 290 TPMPGRFKDYIAMPKANMYQSIHTTVIGPKGNPVEVQIRTHEMHQIAEFGVAAHWAYKE 348
>gi|385813969|ref|YP_005850362.1| PpGpp synthetase [Lactobacillus helveticus H10]
gi|323466688|gb|ADX70375.1| PpGpp synthetase [Lactobacillus helveticus H10]
Length = 749
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 132/424 (31%), Positives = 198/424 (46%), Gaps = 101/424 (23%)
Query: 99 FNDEQV---QKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
ND+QV +KA FA +AH GQ R +G PY+ H LA L DT+VAG
Sbjct: 23 MNDDQVAFVEKAYEFANKAHAGQKRASGQPYIIHPTQVAGTLATLGLDP-----DTIVAG 77
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
LHD V+D + ++E+FG++VA +V GV++L+ H+E
Sbjct: 78 FLHDTVEDTPVTNDELKEKFGEDVAFIVDGVTKLNKYE--------------YKSHQEFL 123
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRK 274
H I A+A++ +I LA RL + L+ L+P R+
Sbjct: 124 AENHRKMLI---------AMAKDLRVIMVKLADRLHNMHTLQH---------LRPDKQRR 165
Query: 275 MRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVV 333
+ ++ +++P +R+G I TI + +D SF H L+ + V
Sbjct: 166 IASETMDIYAPLADRLG----IGTI--------KWELEDMSF-----HYLNPEAYYRIVN 208
Query: 334 PFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIP 393
D+ R +R K++ D K+ + K + + GI
Sbjct: 209 LMDV--KRSQREKYIADTIKTLK-----KTLDELGI------------------------ 237
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
+ + R K +YSI+ KM K ++YD A+RV+V + ++ CY++L
Sbjct: 238 --KYEIYGRPKHIYSIYKKMVNKHKDFDEIYDLLAVRVIVKN---------VRDCYAVLG 286
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
VH W PI G F DYI PK +GYQSLHT + GP G LE+QIRT++MHE AE+G+AAH
Sbjct: 287 AVHTEWKPIPGRFKDYIAMPKVNGYQSLHTTIIGPGGRPLEIQIRTEQMHEVAEYGVAAH 346
Query: 514 WLYK 517
W YK
Sbjct: 347 WAYK 350
>gi|256961538|ref|ZP_05565709.1| RelA/SpoT protein [Enterococcus faecalis Merz96]
gi|293384703|ref|ZP_06630558.1| GTP diphosphokinase [Enterococcus faecalis R712]
gi|293387403|ref|ZP_06631958.1| GTP diphosphokinase [Enterococcus faecalis S613]
gi|312908311|ref|ZP_07767275.1| GTP diphosphokinase [Enterococcus faecalis DAPTO 512]
gi|312910615|ref|ZP_07769457.1| GTP diphosphokinase [Enterococcus faecalis DAPTO 516]
gi|256952034|gb|EEU68666.1| RelA/SpoT protein [Enterococcus faecalis Merz96]
gi|291078010|gb|EFE15374.1| GTP diphosphokinase [Enterococcus faecalis R712]
gi|291083194|gb|EFE20157.1| GTP diphosphokinase [Enterococcus faecalis S613]
gi|310625725|gb|EFQ09008.1| GTP diphosphokinase [Enterococcus faecalis DAPTO 512]
gi|311289163|gb|EFQ67719.1| GTP diphosphokinase [Enterococcus faecalis DAPTO 516]
Length = 737
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 131/419 (31%), Positives = 200/419 (47%), Gaps = 98/419 (23%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E VQKA+ +A++AH GQ R++G+PY+ H I ILA L TV G LHDVV
Sbjct: 26 ELVQKALTYAEKAHEGQVRQSGEPYIIHPIQVAGILAELHMDP-----HTVATGFLHDVV 80
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNM 221
+D +L ++EEFG+++A LV GV++L I + H E+LA+ M
Sbjct: 81 EDTDVTLDDLKEEFGEDIAMLVDGVTKLGKIK--YKSHE-----------EQLAENHRKM 127
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLA 280
A+AQ+ +I LA RL + LK ED R++ +
Sbjct: 128 LL----------AMAQDLRVIMVKLADRLHNMRTLKHLREDKQ---------RRIAQETL 168
Query: 281 SMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILS 339
+++P +R+G S RI + L R + ++ + + L++ S
Sbjct: 169 EIYAPLAHRLGIS-RIKWELEDTAL--RYINPNQYYRIVN--------LMQ--------S 209
Query: 340 DRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTL 399
R +R ++ A+ V+D +A L E +
Sbjct: 210 KRDEREAYV------------AEAVEDIRLATEDLEIYAE-------------------I 238
Query: 400 SSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLW 459
R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L +H W
Sbjct: 239 YGRPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLGAIHTRW 289
Query: 460 IPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
P+ G F DYI PK + YQS+HT V GP G+ +EVQIRT +MH+ AE G+AAHW YKE
Sbjct: 290 TPMPGRFKDYIAMPKANMYQSIHTTVIGPKGNPVEVQIRTHEMHQIAEFGVAAHWAYKE 348
>gi|29376496|ref|NP_815650.1| GTP pyrophosphokinase [Enterococcus faecalis V583]
gi|227519316|ref|ZP_03949365.1| GTP pyrophosphokinase [Enterococcus faecalis TX0104]
gi|229545443|ref|ZP_04434168.1| GTP pyrophosphokinase [Enterococcus faecalis TX1322]
gi|229549687|ref|ZP_04438412.1| GTP pyrophosphokinase [Enterococcus faecalis ATCC 29200]
gi|255972385|ref|ZP_05422971.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|255975488|ref|ZP_05426074.1| RelA/SpoT protein [Enterococcus faecalis T2]
gi|256762903|ref|ZP_05503483.1| RelA/SpoT protein [Enterococcus faecalis T3]
gi|256853488|ref|ZP_05558858.1| GTP pyrophosphokinase [Enterococcus faecalis T8]
gi|256959287|ref|ZP_05563458.1| RelA/SpoT protein [Enterococcus faecalis DS5]
gi|256964754|ref|ZP_05568925.1| RelA/SpoT protein [Enterococcus faecalis HIP11704]
gi|257079353|ref|ZP_05573714.1| RelA/SpoT protein [Enterococcus faecalis JH1]
gi|257082207|ref|ZP_05576568.1| RelA/SpoT protein [Enterococcus faecalis E1Sol]
gi|257084825|ref|ZP_05579186.1| RelA/SpoT protein [Enterococcus faecalis Fly1]
gi|257087178|ref|ZP_05581539.1| RelA/SpoT protein [Enterococcus faecalis D6]
gi|257419654|ref|ZP_05596648.1| RelA/SpoT family protein [Enterococcus faecalis T11]
gi|294779745|ref|ZP_06745132.1| GTP diphosphokinase [Enterococcus faecalis PC1.1]
gi|300860169|ref|ZP_07106256.1| GTP diphosphokinase [Enterococcus faecalis TUSoD Ef11]
gi|307268139|ref|ZP_07549526.1| GTP diphosphokinase [Enterococcus faecalis TX4248]
gi|307272834|ref|ZP_07554081.1| GTP diphosphokinase [Enterococcus faecalis TX0855]
gi|307275913|ref|ZP_07557046.1| GTP diphosphokinase [Enterococcus faecalis TX2134]
gi|307277696|ref|ZP_07558782.1| GTP diphosphokinase [Enterococcus faecalis TX0860]
gi|307287881|ref|ZP_07567914.1| GTP diphosphokinase [Enterococcus faecalis TX0109]
gi|307295910|ref|ZP_07575742.1| GTP diphosphokinase [Enterococcus faecalis TX0411]
gi|312900879|ref|ZP_07760173.1| GTP diphosphokinase [Enterococcus faecalis TX0470]
gi|312951286|ref|ZP_07770187.1| GTP diphosphokinase [Enterococcus faecalis TX0102]
gi|384513600|ref|YP_005708693.1| GTP diphosphokinase [Enterococcus faecalis OG1RF]
gi|384518976|ref|YP_005706281.1| GTP pyrophosphokinase [Enterococcus faecalis 62]
gi|397700204|ref|YP_006537992.1| GTP pyrophosphokinase [Enterococcus faecalis D32]
gi|422686386|ref|ZP_16744584.1| GTP diphosphokinase [Enterococcus faecalis TX4000]
gi|422692692|ref|ZP_16750707.1| GTP diphosphokinase [Enterococcus faecalis TX0031]
gi|422697189|ref|ZP_16755135.1| GTP diphosphokinase [Enterococcus faecalis TX1346]
gi|422704878|ref|ZP_16762688.1| GTP diphosphokinase [Enterococcus faecalis TX1302]
gi|422711426|ref|ZP_16768355.1| GTP diphosphokinase [Enterococcus faecalis TX0027]
gi|422713284|ref|ZP_16770037.1| GTP diphosphokinase [Enterococcus faecalis TX0309A]
gi|422717180|ref|ZP_16773870.1| GTP diphosphokinase [Enterococcus faecalis TX0309B]
gi|422719465|ref|ZP_16776106.1| GTP diphosphokinase [Enterococcus faecalis TX0017]
gi|422724016|ref|ZP_16780506.1| GTP diphosphokinase [Enterococcus faecalis TX2137]
gi|422725202|ref|ZP_16781670.1| GTP diphosphokinase [Enterococcus faecalis TX0312]
gi|422730242|ref|ZP_16786635.1| GTP diphosphokinase [Enterococcus faecalis TX0012]
gi|422732553|ref|ZP_16788884.1| GTP diphosphokinase [Enterococcus faecalis TX0645]
gi|422735767|ref|ZP_16792033.1| GTP diphosphokinase [Enterococcus faecalis TX1341]
gi|422741846|ref|ZP_16795868.1| GTP diphosphokinase [Enterococcus faecalis TX2141]
gi|424672845|ref|ZP_18109788.1| GTP diphosphokinase [Enterococcus faecalis 599]
gi|424678338|ref|ZP_18115178.1| GTP diphosphokinase [Enterococcus faecalis ERV103]
gi|424682195|ref|ZP_18118972.1| GTP diphosphokinase [Enterococcus faecalis ERV116]
gi|424685423|ref|ZP_18122121.1| GTP diphosphokinase [Enterococcus faecalis ERV129]
gi|424688183|ref|ZP_18124799.1| GTP diphosphokinase [Enterococcus faecalis ERV25]
gi|424691052|ref|ZP_18127579.1| GTP diphosphokinase [Enterococcus faecalis ERV31]
gi|424694635|ref|ZP_18131031.1| GTP diphosphokinase [Enterococcus faecalis ERV37]
gi|424695820|ref|ZP_18132193.1| GTP diphosphokinase [Enterococcus faecalis ERV41]
gi|424702067|ref|ZP_18138230.1| GTP diphosphokinase [Enterococcus faecalis ERV62]
gi|424704288|ref|ZP_18140390.1| GTP diphosphokinase [Enterococcus faecalis ERV63]
gi|424712754|ref|ZP_18144923.1| GTP diphosphokinase [Enterococcus faecalis ERV65]
gi|424716877|ref|ZP_18146176.1| GTP diphosphokinase [Enterococcus faecalis ERV68]
gi|424722259|ref|ZP_18151323.1| GTP diphosphokinase [Enterococcus faecalis ERV72]
gi|424722967|ref|ZP_18151987.1| GTP diphosphokinase [Enterococcus faecalis ERV73]
gi|424728350|ref|ZP_18156957.1| GTP diphosphokinase [Enterococcus faecalis ERV81]
gi|424740517|ref|ZP_18168899.1| GTP diphosphokinase [Enterococcus faecalis ERV85]
gi|424749874|ref|ZP_18177951.1| GTP diphosphokinase [Enterococcus faecalis ERV93]
gi|424759337|ref|ZP_18187003.1| GTP diphosphokinase [Enterococcus faecalis R508]
gi|428767377|ref|YP_007153488.1| GTP pyrophosphokinase [Enterococcus faecalis str. Symbioflor 1]
gi|430360791|ref|ZP_19426449.1| RelA/SpoT family protein [Enterococcus faecalis OG1X]
gi|430367252|ref|ZP_19427815.1| RelA/SpoT family protein [Enterococcus faecalis M7]
gi|29343960|gb|AAO81720.1| GTP pyrophosphokinase [Enterococcus faecalis V583]
gi|227073245|gb|EEI11208.1| GTP pyrophosphokinase [Enterococcus faecalis TX0104]
gi|229305167|gb|EEN71163.1| GTP pyrophosphokinase [Enterococcus faecalis ATCC 29200]
gi|229309359|gb|EEN75346.1| GTP pyrophosphokinase [Enterococcus faecalis TX1322]
gi|255963403|gb|EET95879.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|255968360|gb|EET98982.1| RelA/SpoT protein [Enterococcus faecalis T2]
gi|256684154|gb|EEU23849.1| RelA/SpoT protein [Enterococcus faecalis T3]
gi|256711947|gb|EEU26985.1| GTP pyrophosphokinase [Enterococcus faecalis T8]
gi|256949783|gb|EEU66415.1| RelA/SpoT protein [Enterococcus faecalis DS5]
gi|256955250|gb|EEU71882.1| RelA/SpoT protein [Enterococcus faecalis HIP11704]
gi|256987383|gb|EEU74685.1| RelA/SpoT protein [Enterococcus faecalis JH1]
gi|256990237|gb|EEU77539.1| RelA/SpoT protein [Enterococcus faecalis E1Sol]
gi|256992855|gb|EEU80157.1| RelA/SpoT protein [Enterococcus faecalis Fly1]
gi|256995208|gb|EEU82510.1| RelA/SpoT protein [Enterococcus faecalis D6]
gi|257161482|gb|EEU91442.1| RelA/SpoT family protein [Enterococcus faecalis T11]
gi|294453119|gb|EFG21534.1| GTP diphosphokinase [Enterococcus faecalis PC1.1]
gi|295113238|emb|CBL31875.1| (p)ppGpp synthetase, RelA/SpoT family [Enterococcus sp. 7L76]
gi|300849208|gb|EFK76958.1| GTP diphosphokinase [Enterococcus faecalis TUSoD Ef11]
gi|306496241|gb|EFM65820.1| GTP diphosphokinase [Enterococcus faecalis TX0411]
gi|306501026|gb|EFM70333.1| GTP diphosphokinase [Enterococcus faecalis TX0109]
gi|306505575|gb|EFM74759.1| GTP diphosphokinase [Enterococcus faecalis TX0860]
gi|306507243|gb|EFM76380.1| GTP diphosphokinase [Enterococcus faecalis TX2134]
gi|306510448|gb|EFM79471.1| GTP diphosphokinase [Enterococcus faecalis TX0855]
gi|306515529|gb|EFM84057.1| GTP diphosphokinase [Enterococcus faecalis TX4248]
gi|310630722|gb|EFQ14005.1| GTP diphosphokinase [Enterococcus faecalis TX0102]
gi|311291978|gb|EFQ70534.1| GTP diphosphokinase [Enterococcus faecalis TX0470]
gi|315025979|gb|EFT37911.1| GTP diphosphokinase [Enterococcus faecalis TX2137]
gi|315028900|gb|EFT40832.1| GTP diphosphokinase [Enterococcus faecalis TX4000]
gi|315033291|gb|EFT45223.1| GTP diphosphokinase [Enterococcus faecalis TX0017]
gi|315034529|gb|EFT46461.1| GTP diphosphokinase [Enterococcus faecalis TX0027]
gi|315143404|gb|EFT87420.1| GTP diphosphokinase [Enterococcus faecalis TX2141]
gi|315149223|gb|EFT93239.1| GTP diphosphokinase [Enterococcus faecalis TX0012]
gi|315152592|gb|EFT96608.1| GTP diphosphokinase [Enterococcus faecalis TX0031]
gi|315159888|gb|EFU03905.1| GTP diphosphokinase [Enterococcus faecalis TX0312]
gi|315161370|gb|EFU05387.1| GTP diphosphokinase [Enterococcus faecalis TX0645]
gi|315163667|gb|EFU07684.1| GTP diphosphokinase [Enterococcus faecalis TX1302]
gi|315167501|gb|EFU11518.1| GTP diphosphokinase [Enterococcus faecalis TX1341]
gi|315174315|gb|EFU18332.1| GTP diphosphokinase [Enterococcus faecalis TX1346]
gi|315574555|gb|EFU86746.1| GTP diphosphokinase [Enterococcus faecalis TX0309B]
gi|315581803|gb|EFU93994.1| GTP diphosphokinase [Enterococcus faecalis TX0309A]
gi|323481109|gb|ADX80548.1| GTP pyrophosphokinase [Enterococcus faecalis 62]
gi|327535489|gb|AEA94323.1| GTP diphosphokinase [Enterococcus faecalis OG1RF]
gi|397336843|gb|AFO44515.1| GTP pyrophosphokinase [Enterococcus faecalis D32]
gi|402349566|gb|EJU84510.1| GTP diphosphokinase [Enterococcus faecalis ERV116]
gi|402351666|gb|EJU86546.1| GTP diphosphokinase [Enterococcus faecalis ERV103]
gi|402353351|gb|EJU88183.1| GTP diphosphokinase [Enterococcus faecalis 599]
gi|402358773|gb|EJU93433.1| GTP diphosphokinase [Enterococcus faecalis ERV129]
gi|402361575|gb|EJU96125.1| GTP diphosphokinase [Enterococcus faecalis ERV25]
gi|402362896|gb|EJU97408.1| GTP diphosphokinase [Enterococcus faecalis ERV31]
gi|402370073|gb|EJV04313.1| GTP diphosphokinase [Enterococcus faecalis ERV62]
gi|402370270|gb|EJV04490.1| GTP diphosphokinase [Enterococcus faecalis ERV37]
gi|402379160|gb|EJV12977.1| GTP diphosphokinase [Enterococcus faecalis ERV41]
gi|402379631|gb|EJV13423.1| GTP diphosphokinase [Enterococcus faecalis ERV65]
gi|402382377|gb|EJV16044.1| GTP diphosphokinase [Enterococcus faecalis ERV63]
gi|402386637|gb|EJV20139.1| GTP diphosphokinase [Enterococcus faecalis ERV68]
gi|402389444|gb|EJV22840.1| GTP diphosphokinase [Enterococcus faecalis ERV72]
gi|402394029|gb|EJV27227.1| GTP diphosphokinase [Enterococcus faecalis ERV81]
gi|402400374|gb|EJV33205.1| GTP diphosphokinase [Enterococcus faecalis ERV73]
gi|402401938|gb|EJV34677.1| GTP diphosphokinase [Enterococcus faecalis ERV85]
gi|402404795|gb|EJV37408.1| GTP diphosphokinase [Enterococcus faecalis R508]
gi|402407443|gb|EJV39973.1| GTP diphosphokinase [Enterococcus faecalis ERV93]
gi|427185550|emb|CCO72774.1| GTP pyrophosphokinase [Enterococcus faecalis str. Symbioflor 1]
gi|429512728|gb|ELA02326.1| RelA/SpoT family protein [Enterococcus faecalis OG1X]
gi|429516725|gb|ELA06204.1| RelA/SpoT family protein [Enterococcus faecalis M7]
Length = 737
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 131/419 (31%), Positives = 200/419 (47%), Gaps = 98/419 (23%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E VQKA+ +A++AH GQ R++G+PY+ H I ILA L TV G LHDVV
Sbjct: 26 ELVQKALTYAEKAHEGQVRQSGEPYIIHPIQVAGILAELHMDP-----HTVATGFLHDVV 80
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNM 221
+D +L ++EEFG+++A LV GV++L I + H E+LA+ M
Sbjct: 81 EDTDVTLDDLKEEFGEDIAMLVDGVTKLGKIK--YKSHE-----------EQLAENHRKM 127
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLA 280
A+AQ+ +I LA RL + LK ED R++ +
Sbjct: 128 LL----------AMAQDLRVIMVKLADRLHNMRTLKHLREDKQ---------RRIAQETL 168
Query: 281 SMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILS 339
+++P +R+G S RI + L R + ++ + + L++ S
Sbjct: 169 EIYAPLAHRLGIS-RIKWELEDTAL--RYINPNQYYRIVN--------LMQ--------S 209
Query: 340 DRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTL 399
R +R ++ A+ V+D +A L E +
Sbjct: 210 KRDEREAYV------------AEAVEDIRLATEDLEIYAE-------------------I 238
Query: 400 SSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLW 459
R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L +H W
Sbjct: 239 YGRPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLGAIHTRW 289
Query: 460 IPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
P+ G F DYI PK + YQS+HT V GP G+ +EVQIRT +MH+ AE G+AAHW YKE
Sbjct: 290 TPMPGRFKDYIAMPKANMYQSIHTTVIGPKGNPVEVQIRTHEMHQIAEFGVAAHWAYKE 348
>gi|442804848|ref|YP_007372997.1| GTP pyrophosphokinase RelA [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442740698|gb|AGC68387.1| GTP pyrophosphokinase RelA [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 759
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 126/426 (29%), Positives = 204/426 (47%), Gaps = 96/426 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA FA AH GQ R +G+P++ H + ILA + + TVVAG+LHD V+D
Sbjct: 56 IEKAYKFACIAHEGQKRSSGEPFVIHPLQVAYILAEMEMDTA-----TVVAGMLHDTVED 110
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+ + + + FG+E+A LV GV++L+ I N+ + E N+R
Sbjct: 111 SSFTYENTLKNFGEEIANLVDGVTKLAKIPY---------TNKQEIQAE-------NLRK 154
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
++ A++++ +I LA RL + L + + QI ++ + ++
Sbjct: 155 MFL-------AMSKDIRVIIIKLADRL------HNMRTLKYKPREKQI--EIAQETLDIY 199
Query: 284 SP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
+P +R+G + + +D SF H DL E + R+
Sbjct: 200 APLAHRLGIYKV------------KWELEDLSFRYL--HEKEYYDLAEKIA-----KKRK 240
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
+R +++ ++ K+ E+A+E G+E + R
Sbjct: 241 EREEYIENIMKT---------------------VAEKAMEM----------GIEAHIDGR 269
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K LYSI+ KM+R+ + ++YD A+RV+V ++ CY++L +VH L+ P+
Sbjct: 270 PKHLYSIYMKMKRQHKELDQIYDLFAIRVIVN---------TVKDCYAVLGLVHELYKPM 320
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
G F DYI PKP+ YQSLHT V GP+G EVQIRT +MH AE G+AAHW YKE G +
Sbjct: 321 PGRFKDYISMPKPNMYQSLHTTVIGPEGIPFEVQIRTWEMHRIAEVGIAAHWKYKEGGRQ 380
Query: 523 LQSISS 528
+S
Sbjct: 381 NDDLSE 386
>gi|257422238|ref|ZP_05599228.1| GTP pyrophosphokinase [Enterococcus faecalis X98]
gi|422705431|ref|ZP_16763233.1| GTP diphosphokinase [Enterococcus faecalis TX0043]
gi|257164062|gb|EEU94022.1| GTP pyrophosphokinase [Enterococcus faecalis X98]
gi|315157277|gb|EFU01294.1| GTP diphosphokinase [Enterococcus faecalis TX0043]
Length = 737
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 131/419 (31%), Positives = 200/419 (47%), Gaps = 98/419 (23%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E VQKA+ +A++AH GQ R++G+PY+ H I ILA L TV G LHDVV
Sbjct: 26 ELVQKALTYAEKAHEGQVRQSGEPYIIHPIQVAGILAELHMDP-----HTVATGFLHDVV 80
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNM 221
+D +L ++EEFG+++A LV GV++L I + H E+LA+ M
Sbjct: 81 EDTDVTLDDLKEEFGEDIAMLVDGVTKLGKIK--YKSHE-----------EQLAENHRKM 127
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLA 280
A+AQ+ +I LA RL + LK ED R++ +
Sbjct: 128 LL----------AMAQDLRVIMVKLADRLHNMRTLKHLREDKQ---------RRIAQETL 168
Query: 281 SMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILS 339
+++P +R+G S RI + L R + ++ + + L++ S
Sbjct: 169 EIYAPLAHRLGIS-RIKWELEDTAL--RYINPNQYYRIVN--------LMQ--------S 209
Query: 340 DRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTL 399
R +R ++ A+ V+D +A L E +
Sbjct: 210 KRDEREAYV------------AEAVEDIRLATEDLEIYAE-------------------I 238
Query: 400 SSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLW 459
R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L +H W
Sbjct: 239 YGRPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLGAIHTRW 289
Query: 460 IPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
P+ G F DYI PK + YQS+HT V GP G+ +EVQIRT +MH+ AE G+AAHW YKE
Sbjct: 290 TPMPGRFKDYIAMPKANMYQSIHTTVIGPKGNPVEVQIRTHEMHQIAEFGVAAHWAYKE 348
>gi|227871732|ref|ZP_03990140.1| GTP diphosphokinase, partial [Oribacterium sinus F0268]
gi|227842420|gb|EEJ52642.1| GTP diphosphokinase [Oribacterium sinus F0268]
Length = 708
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 129/418 (30%), Positives = 197/418 (47%), Gaps = 95/418 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA AK H Q RK+G+PY+ H + IL+ L + +T+ AG+LHDVV+D
Sbjct: 42 IEKAYEVAKEQHKDQKRKSGEPYIIHPLCVAIILSDL-----EMDKETIAAGLLHDVVED 96
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
SL +EE F +VA LV GV++L+ +N +N ++ L E N+R
Sbjct: 97 TGMSLKQVEEMFNPDVAVLVDGVTKLTQLN--------LNTDKVELQAE-------NLRK 141
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
++ ++A++ +I LA RL L L+ +
Sbjct: 142 MFV-------SMAKDIRVIIIKLADRLHNLRTLEYQ------------------------ 170
Query: 283 WSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
SP R +R I S PL +R D LS+K LE V +D+
Sbjct: 171 -SPEKRKEKARESLEIYS--PLADRLGISKIKIEMDD---LSLK-YLEPEVYYDL----- 218
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
+ +H + ++ K+VQ+ E +E+ G+ + R
Sbjct: 219 --AEKVH-FKREVREERIDKIVQE----------VREHIEES---------GIRANIKGR 256
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
+K +SI+ KM ++ I ++YD A+R++V ++ CY++L +H+L+ PI
Sbjct: 257 IKHFFSIYKKMVNQNKTIDQIYDLFAIRIIVD---------TVKDCYAVLGFIHKLYTPI 307
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 520
G F DYI PKP+ YQSLHT V G DG E+QIRT +MH AE G+AAHW YKE G
Sbjct: 308 PGRFKDYIAMPKPNMYQSLHTTVIGKDGVPFEIQIRTFEMHRTAEFGIAAHWKYKEEG 365
>gi|126660186|ref|ZP_01731304.1| (p)ppGpp 3'-pyrophosphohydrolase [Cyanothece sp. CCY0110]
gi|126618551|gb|EAZ89302.1| (p)ppGpp 3'-pyrophosphohydrolase [Cyanothece sp. CCY0110]
Length = 744
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 132/418 (31%), Positives = 200/418 (47%), Gaps = 99/418 (23%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A FA + H GQ RK+G+PY+ H + IL L G +A+ + AG LHDVV+D
Sbjct: 41 RAFNFAYKLHEGQARKSGEPYIAHPVAVAGILRDL---GGDKAM--IAAGFLHDVVEDTD 95
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTIY 225
++ IEE FG EVA LV GV++LS + N + T E N R ++
Sbjct: 96 VTVEEIEEMFGHEVALLVEGVTKLS----------KFNFSNKTEQQAE------NFRRMF 139
Query: 226 ALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASMWS 284
A+A++ +I LA RL + L+ L+P+ R++ + +++
Sbjct: 140 L-------AMAKDIRVIVVKLADRLHNMRTLEP---------LRPEKQRRIARETKEIFA 183
Query: 285 P-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFD-EHVLSMKDLLEAVVPFDILSDRR 342
P NR+G R + +D SF + E +++L+ + DR
Sbjct: 184 PLANRLGIWR------------VKWELEDLSFKYLEPEDYREIQNLIS-----EKRIDRE 226
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
R + + + + K + D GI++ + L R
Sbjct: 227 TRIETVKNTLQ--------KRLDDMGISI-------------------------LELQGR 253
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K LY I+ KM+R++ G H++YD ALR++V + CY L +VH ++ P+
Sbjct: 254 PKHLYGIYFKMQRQNKGFHEIYDLAALRIIVKTN---------EECYRALAVVHDVFKPM 304
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 520
G F DYI PKP+ YQSLHT V G +G LE+QIRT +MH AE+G+AAHW YKETG
Sbjct: 305 PGRFKDYIGLPKPNRYQSLHTTVVGLNGRPLEIQIRTLEMHHIAEYGIAAHWKYKETG 362
Score = 39.7 bits (91), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 718 KVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGST 777
K LR +L W+ L+ + + D++ +V + PNG+++ L G+T
Sbjct: 375 KFTWLRQLLDWQNDLKDDQEY--------VDNLKDNLFDDDVYVFT-PNGDVISLSRGAT 425
Query: 778 AADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
A D A + VG K +NG+ + + L +GDIVE+
Sbjct: 426 AVDFAYRIHTEVGNHMKGARINGKWSVLDQPLHNGDIVEI 465
>gi|304309936|ref|YP_003809534.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [gamma
proteobacterium HdN1]
gi|301795669|emb|CBL43868.1| Guanosine-3\',5\'-bis(Diphosphate) 3\'-pyrophosphohydrolase [gamma
proteobacterium HdN1]
Length = 703
Score = 166 bits (421), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 124/428 (28%), Positives = 188/428 (43%), Gaps = 120/428 (28%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILA---MLIPSSGKRAVDTVVAGILHD 159
Q+QKA FA AH GQFR+TGDPY+ H + ILA M PS ++AG+LHD
Sbjct: 21 QIQKAYTFAASAHEGQFRRTGDPYIAHPLAVSMILADMHMDAPS--------IMAGLLHD 72
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------QLLRRHRRINVNQGTLG 210
V++D S ++++EFG+ VA LV GVS++ I Q R+ +
Sbjct: 73 VIEDTHVSKEAVKQEFGETVANLVDGVSKIGAIKFESKAEAQAQNFRKMMLAMTKDIRVI 132
Query: 211 HEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
+LADRLHNMR AVL PQ
Sbjct: 133 LVKLADRLHNMR----------------------------------------TLAVLHPQ 152
Query: 271 IFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDL-L 329
R++ + +++P + Y +E + ++DL
Sbjct: 153 KRRRIATETLEIYAP---IAYR-----------------------LGMNEVRIELEDLGF 186
Query: 330 EAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLIST 389
+A+ P + T+ K +++ G +V+ +E L L
Sbjct: 187 QAIYPM-------RATRI------------KKAIIKARGTRKDMIVSIQEMLVHAL--EH 225
Query: 390 SYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCY 449
+++P + R K LYSI+ KM+ + ++ D R++V + + CY
Sbjct: 226 NHLPARVI---GREKHLYSIYQKMKTQRKPFSEIMDVYGFRIIVDN---------VDACY 273
Query: 450 SLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHG 509
L VH L+ PI G F DYI PK +GYQSLHT ++G +G +E+QIRT+ M + A G
Sbjct: 274 RALGTVHNLYTPIPGRFKDYIAIPKSNGYQSLHTTLKGKNGVPIEIQIRTEDMEDMANSG 333
Query: 510 LAAHWLYK 517
+A+HWLYK
Sbjct: 334 IASHWLYK 341
>gi|218132940|ref|ZP_03461744.1| hypothetical protein BACPEC_00801 [[Bacteroides] pectinophilus ATCC
43243]
gi|217991813|gb|EEC57817.1| RelA/SpoT family protein [[Bacteroides] pectinophilus ATCC 43243]
Length = 776
Score = 166 bits (421), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 127/432 (29%), Positives = 195/432 (45%), Gaps = 98/432 (22%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + Q++KA A +AH GQFRK+G+PY+ H I ILA L + ++++AG
Sbjct: 57 HPSTDMSQIEKAYKIATKAHEGQFRKSGEPYIIHPICVAIILAEL-----ELDKESIIAG 111
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
+LHDVV+D + I EFG EVA LV GV++L+ +N H+++
Sbjct: 112 LLHDVVEDTVMTTDDITREFGAEVALLVDGVTKLTQLN---------------YEHDKIE 156
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
+ N+R ++ A+A++ +I LA RL M
Sbjct: 157 IQAENLRKMFL-------AMAKDIRVIMIKLADRL----------------------HNM 187
Query: 276 RADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPF 335
R SP ++ SR I + P+ R D LSM+ L+ V
Sbjct: 188 RT--MQYQSPAKQIEKSRETMEIYA--PIAHRLGISKIKVELDD---LSMQYLMPDV--- 237
Query: 336 DILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGM 395
+DL K K+ + I + E A G+
Sbjct: 238 ------------YNDLVKQINMNKENREAFIKSIIKEVKMHIENA-------------GI 272
Query: 396 EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIV 455
E + R+K +SI+ KM ++ + ++YD A+R+ V ++ CY+ L ++
Sbjct: 273 EAEIDGRVKHFFSIYRKMVNQNKTLDQIYDLFAVRIKV---------ETVKDCYAALGVI 323
Query: 456 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 515
H ++ PI G F DYI PK + YQSLHT + +G E+QIRT +MH AE+G+AAHW
Sbjct: 324 HEMYKPIPGRFKDYIAMPKENMYQSLHTTLIASNGRPFEIQIRTYEMHRTAEYGIAAHWK 383
Query: 516 YK-----ETGNK 522
YK ETGN+
Sbjct: 384 YKEGKTGETGNQ 395
>gi|294783445|ref|ZP_06748769.1| GTP diphosphokinase [Fusobacterium sp. 1_1_41FAA]
gi|294480323|gb|EFG28100.1| GTP diphosphokinase [Fusobacterium sp. 1_1_41FAA]
Length = 725
Score = 166 bits (421), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 122/423 (28%), Positives = 197/423 (46%), Gaps = 100/423 (23%)
Query: 99 FNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILH 158
++ ++++ A+AFA+ +H GQ+RK+GD Y+ H + +IL + K DTVVAG+LH
Sbjct: 19 YDFDKLKLALAFAEESHQGQYRKSGDDYIIHPVEVAKILMDM-----KMDTDTVVAGLLH 73
Query: 159 DVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRL 218
DVV+D + I+ FGD VA LV GV++L + GT E
Sbjct: 74 DVVEDTLIPIADIKYNFGDTVAVLVDGVTKLKALPN------------GTKNQAE----- 116
Query: 219 HNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRAD 278
N+R + A+A+ +I LA RL + L F ++P+ + + +
Sbjct: 117 -NIRKMIL-------AMAENIRVILIKLADRL------HNMRTLKF--MKPEKQQAISKE 160
Query: 279 LASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFD-EHVLSMKDLLEAVVPFD 336
+++P +R+G ++ ++ +D SF+ E L +K L+E
Sbjct: 161 TLDIYAPLAHRLGMAKI------------KSELEDLSFSYLHHEEYLEIKRLVE------ 202
Query: 337 ILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGME 396
+ + +R ++ + ++ + L L G++
Sbjct: 203 --NTKEERKDYIDNFIRTMKR------------TLVDL-------------------GLK 229
Query: 397 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 456
+ R K YSI+ KM +K +YD +RV+V DK CY +L IVH
Sbjct: 230 AEVKGRFKHFYSIYKKMYQKGKEFDDIYDLMGVRVIVEDK---------AACYHILGIVH 280
Query: 457 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 516
+ P+ G F DYI PK + YQS+HT + GP G +E+QIRT+ M + AE G+AAHW Y
Sbjct: 281 SQYTPVPGRFKDYIAVPKSNNYQSIHTTIVGPLGKFIEIQIRTKDMDDIAEEGIAAHWNY 340
Query: 517 KET 519
KE
Sbjct: 341 KEN 343
>gi|300812618|ref|ZP_07093031.1| GTP diphosphokinase [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|300496399|gb|EFK31508.1| GTP diphosphokinase [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
Length = 753
Score = 166 bits (421), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 138/448 (30%), Positives = 207/448 (46%), Gaps = 103/448 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+ A FA RAH GQ R +G PY+ H LA L DTV AG LHD V+D
Sbjct: 28 VESAYQFAARAHEGQTRASGQPYIVHPTQVAGTLANLGLDP-----DTVAAGFLHDTVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+ I+E+FG +VA +V GV++L N+ + H+E H
Sbjct: 83 TSVTNDDIKEKFGADVAFIVDGVTKL---NKYEYK-----------SHKEFLAENHRKML 128
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
I A+A++ +I LA RL + L+ L+P R++ A+ +
Sbjct: 129 I---------AMAKDLRVILVKLADRLHNMHTLEH---------LRPDKQRRIAAETLDI 170
Query: 283 WSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
++P +R+G I TI + +D SF H ++ + + V D + R
Sbjct: 171 YAPLADRLG----IGTI--------KWELEDMSF-----HYMNPEAYYKIVSMMD--AKR 211
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
+R ++ D A+ L ++L G++ +S
Sbjct: 212 SEREGYIKD-------------------AIDYLRGTLDSL------------GIKYDISG 240
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI+ KM K +++YD A+RV+V P ++ CY++L VH W P
Sbjct: 241 RPKHIYSIYKKMVNKHKDFNEIYDLLAVRVIV---------PTVKDCYAVLGAVHTKWKP 291
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ G F DYI PK +GYQSLHT + GP G LE+QIRT++MH+ AE+G+AAHW YK GN
Sbjct: 292 MPGRFKDYIAMPKANGYQSLHTTIIGPGGKPLEIQIRTEEMHKVAEYGVAAHWAYKR-GN 350
Query: 522 KLQSISSMDESDIEASS---SLSKDTDD 546
Q + D ++ L KD+ D
Sbjct: 351 -FQGVDEKDGGALDIGREILELQKDSSD 377
>gi|20807650|ref|NP_622821.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Thermoanaerobacter tengcongensis MB4]
gi|20516195|gb|AAM24425.1| Guanosine polyphosphate pyrophosphohydrolases/synthetases
[Thermoanaerobacter tengcongensis MB4]
Length = 718
Score = 166 bits (421), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 125/421 (29%), Positives = 194/421 (46%), Gaps = 98/421 (23%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
N + + KA FA +AH GQ R +G+PY+ H + ILA L + + T+ AG+LHD
Sbjct: 18 NLDLLYKAYNFAVKAHEGQVRNSGEPYIVHPVEVAYILADL-----ELDLTTIAAGLLHD 72
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLH 219
V++D + + EEFG E+A LV G + +L + + V Q +
Sbjct: 73 VIEDTGVTYDQLMEEFGKEIADLVDG------VTKLGKIEYKSKVEQ----------QAE 116
Query: 220 NMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRAD 278
NMR + A+A++ +I LA RL + LK L P ++ +
Sbjct: 117 NMRKMLI-------AMAKDIRVILIKLADRLHNMRTLK---------YLPPDKQKEKAEE 160
Query: 279 LASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDI 337
+++P +R+G S+ + E H DL+E V
Sbjct: 161 TLEIYAPIAHRLGISK--------------IKWELEDLCLRYLHPEEYYDLVEKVA---- 202
Query: 338 LSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEV 397
+ R++R +F+ ++ + ++ L++ G+
Sbjct: 203 -AKRKEREEFIQNI----------------------IATIKQKLDE---------MGIPA 230
Query: 398 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 457
+ R K YSI+ KM+ ++ ++YD A+R++V ++ CY +L IVH
Sbjct: 231 EVDGRPKHFYSIYKKMKTQNKTFEEIYDLLAIRIIVN---------TVKDCYGVLGIVHT 281
Query: 458 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 517
LW PI G F DYI PKP+ YQSLHT V GP G EVQIRT +MH+ AE+G+AAHW YK
Sbjct: 282 LWKPIPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEVQIRTWEMHKTAEYGIAAHWRYK 341
Query: 518 E 518
E
Sbjct: 342 E 342
Score = 43.1 bits (100), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 710 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 769
+ E + K+ LR +L W+++L+ ++ K + D V V P G++
Sbjct: 345 TTEDEFDKKLVWLRQLLEWQKELKDPKEFMETL---KIDLFTDEV------FVFTPKGDV 395
Query: 770 MRLRSGSTAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 815
+ L +GST D A ++G VNG++V N +LK GDIVE+ V
Sbjct: 396 ISLPAGSTPIDFAYSIHTEIGHRMNGAKVNGRIVPINYQLKTGDIVEILV 445
>gi|295426083|ref|ZP_06818753.1| GTP diphosphokinase [Lactobacillus amylolyticus DSM 11664]
gi|295064252|gb|EFG55190.1| GTP diphosphokinase [Lactobacillus amylolyticus DSM 11664]
Length = 749
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 140/443 (31%), Positives = 207/443 (46%), Gaps = 104/443 (23%)
Query: 99 FNDEQ---VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
NDEQ V+KA FA +AH GQ R +G PY+ H LA L DT+ AG
Sbjct: 20 MNDEQIAFVEKAYEFANKAHAGQKRASGQPYIMHPTQVAGTLAALGLDP-----DTIAAG 74
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
LHD V+D + I++EFG++VA +V GV++L N+ + H+E
Sbjct: 75 FLHDTVEDTPVTNDDIKKEFGEDVAFIVDGVTKL---NKYQYK-----------SHQEFL 120
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRK 274
H I A+A++ +I LA RL + L+ L+P R+
Sbjct: 121 AENHRKMLI---------AMAKDLRVIMVKLADRLHNMHTLQH---------LRPDKQRR 162
Query: 275 MRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVV 333
+ ++ +++P +R+G I TI + +D SF H L+ + V
Sbjct: 163 IASETMDIYAPLADRLG----IGTI--------KWELEDMSF-----HYLNPEAYYRIVN 205
Query: 334 PFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIP 393
+ R +R K++ D A++ L + L
Sbjct: 206 L--VAVKRSEREKYISD-------------------AISVLKKTLDNL------------ 232
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K +YSI+ KM K ++YD A+RV+V ++ CY++L
Sbjct: 233 GIKYEIYGRPKHIYSIYKKMVNKHKDFDEIYDLLAVRVIV---------KTVRDCYAVLG 283
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRTQ+MHE AE+G+AAH
Sbjct: 284 AVHTEWKPMPGRFKDYIAVPKVNGYQSLHTTIIGPGGRPLEIQIRTQQMHEVAEYGVAAH 343
Query: 514 WLYKETGN--KLQSISSMDESDI 534
W YK GN +Q SS D+ D+
Sbjct: 344 WAYKR-GNFSGVQETSSGDKLDM 365
>gi|291460900|ref|ZP_06600232.1| GTP diphosphokinase [Fusobacterium periodonticum ATCC 33693]
gi|291380153|gb|EFE87671.1| GTP diphosphokinase [Fusobacterium periodonticum ATCC 33693]
Length = 515
Score = 166 bits (420), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 122/423 (28%), Positives = 197/423 (46%), Gaps = 100/423 (23%)
Query: 99 FNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILH 158
++ ++++ A+AFA+ +H GQ+RK+GD Y+ H + +IL + K DTVVAG+LH
Sbjct: 19 YDFDKLKLALAFAEESHQGQYRKSGDDYIIHPVEVAKILMEM-----KMDTDTVVAGLLH 73
Query: 159 DVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRL 218
DVV+D + I+ FGD VA LV GV++L + GT E
Sbjct: 74 DVVEDTLIPIADIKYNFGDTVAVLVDGVTKLKALPN------------GTKNQAE----- 116
Query: 219 HNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRAD 278
N+R + A+A+ +I LA RL + L F ++P+ + + +
Sbjct: 117 -NIRKMIL-------AMAENIRVILIKLADRL------HNMRTLKF--MKPEKQQAISKE 160
Query: 279 LASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFD-EHVLSMKDLLEAVVPFD 336
+++P +R+G ++ ++ +D SF+ E L +K L+E
Sbjct: 161 TLDIYAPLAHRLGMAKI------------KSELEDLSFSYLHHEEYLEIKRLVE------ 202
Query: 337 ILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGME 396
+ + +R ++ + ++ K L+ G++
Sbjct: 203 --NTKEERKDYIDNFIRTM---------------------------KRTLVDL----GLK 229
Query: 397 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 456
+ R K YSI+ KM +K +YD +RV+V DK CY +L IVH
Sbjct: 230 AEVKGRFKHFYSIYKKMYQKGKEFDDIYDLMGVRVIVEDK---------AACYHILGIVH 280
Query: 457 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 516
+ P+ G F DYI PK + YQS+HT + GP G +E+QIRT+ M + AE G+AAHW Y
Sbjct: 281 SQYTPVPGRFKDYIAVPKSNNYQSIHTTIVGPLGKFIEIQIRTKDMDDIAEEGIAAHWNY 340
Query: 517 KET 519
KE
Sbjct: 341 KEN 343
>gi|416384945|ref|ZP_11684705.1| GTP pyrophosphokinase , (p)ppGpp synthetase II /
Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Crocosphaera watsonii WH 0003]
gi|357264961|gb|EHJ13781.1| GTP pyrophosphokinase , (p)ppGpp synthetase II /
Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Crocosphaera watsonii WH 0003]
Length = 744
Score = 166 bits (419), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 133/418 (31%), Positives = 197/418 (47%), Gaps = 99/418 (23%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A FA + H GQ RK+G+PY+ H + IL L G +A+ + AG LHDVV+D
Sbjct: 41 RAFNFAYQLHEGQTRKSGEPYIAHPVAVAGILREL---GGDKAM--IAAGFLHDVVEDTD 95
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTIY 225
++ IE+ FG EVA LV GV++LS + N + T E N R ++
Sbjct: 96 VTVEDIEQRFGQEVALLVEGVTKLS----------KFNFSNKTEQQAE------NFRRMF 139
Query: 226 ALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASMWS 284
A+A++ +I L+ RL + L+ L+P R++ + +++
Sbjct: 140 L-------AMAKDIRVIVVKLSDRLHNMRTLEP---------LRPDKQRRIALETKEIFA 183
Query: 285 P-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRK 343
P NR+G R + +D SF + D RK
Sbjct: 184 PLANRLGIWR------------VKWELEDLSFKYLES------------------EDYRK 213
Query: 344 RTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVT-LSSR 402
F+ + K + + + + V K+LL G++V L R
Sbjct: 214 IQNFVSE--KRIDRETRIETV------------------KKLLSKRLDTMGIQVEELQGR 253
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K LY I+ KM+R++ G H++YD ALR++V + CY L +VH L+ P+
Sbjct: 254 PKHLYGIYCKMQRQNKGFHEIYDLAALRIIVKTN---------EECYRSLAVVHDLFKPM 304
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 520
G F DYI PKP+ YQSLHT V G +G LE+QIRT +MH AE+G+AAHW YKETG
Sbjct: 305 PGRFKDYIGLPKPNLYQSLHTTVVGLNGRPLEIQIRTLEMHHIAEYGIAAHWKYKETG 362
Score = 40.8 bits (94), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 716 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 775
+ K LR +L W+ L+ + + D++ +V + PNG+++ L G
Sbjct: 373 DEKFTWLRQLLDWQNDLKDDQEY--------VDNLKDNLFDDDVYVFT-PNGDVIALARG 423
Query: 776 STAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
+TA D A + VG + K +NG+ + + L++GDIVE+
Sbjct: 424 ATAVDFAYRIHTEVGNQMKGARINGRWSVLDQPLQNGDIVEI 465
>gi|389577382|ref|ZP_10167410.1| (p)ppGpp synthetase, RelA/SpoT family [Eubacterium cellulosolvens
6]
gi|389312867|gb|EIM57800.1| (p)ppGpp synthetase, RelA/SpoT family [Eubacterium cellulosolvens
6]
Length = 777
Score = 166 bits (419), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 120/423 (28%), Positives = 199/423 (47%), Gaps = 103/423 (24%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA A AH GQ RK+G+ Y+ H + G ILA L + +T+V+G+LHDVV+D
Sbjct: 65 IEKAYKIASDAHQGQKRKSGEDYIIHPLCVGIILADL-----ELDKETIVSGLLHDVVED 119
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+ I +FG+EVA++V GV++L +N +++ ++ N+R
Sbjct: 120 TIMTKEEIAGQFGNEVAEIVDGVTKLGQLN---------------YSKDKVEEQAENLRK 164
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
++ A+A++ +I LA RL + LK ++P+ + + +
Sbjct: 165 MFL-------AMAKDIRVIMVKLADRLHNMRTLK---------YMRPEKQLEKARETIDI 208
Query: 283 WSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDIL---- 338
+SP ++R+ LD+ LS+K LE +D++
Sbjct: 209 YSP-----IAQRLGITKVKNELDD----------------LSLK-YLEPAAYYDLVRQIN 246
Query: 339 SDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVT 398
+ +RT F+ A++V D + G+E
Sbjct: 247 GKKSERTAFV------------AQIVDDVKKKIDD-------------------AGLEAQ 275
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+S R K +SI+ KM ++ + ++YD A+R++V ++ CY+ L ++H +
Sbjct: 276 ISGRAKHFFSIYKKMVNQNKTLDQIYDLFAVRIIV---------ETVRDCYAALGVIHEM 326
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
+ PI G F DYI PKP+ YQSLHT + GP G E+QIRT MH AE+G+AAHW YKE
Sbjct: 327 YTPIPGRFKDYIAMPKPNMYQSLHTTLIGPQGKPFEIQIRTFDMHRVAEYGIAAHWKYKE 386
Query: 519 TGN 521
+
Sbjct: 387 ASD 389
>gi|67921546|ref|ZP_00515064.1| RelA/SpoT protein [Crocosphaera watsonii WH 8501]
gi|67856658|gb|EAM51899.1| RelA/SpoT protein [Crocosphaera watsonii WH 8501]
Length = 744
Score = 166 bits (419), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 133/418 (31%), Positives = 197/418 (47%), Gaps = 99/418 (23%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A FA + H GQ RK+G+PY+ H + IL L G +A+ + AG LHDVV+D
Sbjct: 41 RAFNFAYQLHEGQTRKSGEPYIAHPVAVAGILREL---GGDKAM--IAAGFLHDVVEDTD 95
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTIY 225
++ IE+ FG EVA LV GV++LS + N + T E N R ++
Sbjct: 96 VTVEDIEQRFGQEVALLVEGVTKLS----------KFNFSNKTEQQAE------NFRRMF 139
Query: 226 ALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASMWS 284
A+A++ +I L+ RL + L+ L+P R++ + +++
Sbjct: 140 L-------AMAKDIRVIVVKLSDRLHNMRTLEP---------LRPDKQRRIALETKEIFA 183
Query: 285 P-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRK 343
P NR+G R + +D SF + D RK
Sbjct: 184 PLANRLGIWR------------VKWELEDLSFKYLES------------------EDYRK 213
Query: 344 RTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVT-LSSR 402
F+ + K + + + + V K+LL G++V L R
Sbjct: 214 IQNFVSE--KRIDRETRIETV------------------KKLLSKRLDTMGIQVEELQGR 253
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K LY I+ KM+R++ G H++YD ALR++V + CY L +VH L+ P+
Sbjct: 254 PKHLYGIYCKMQRQNKGFHEIYDLAALRIIVKTN---------EECYRSLAVVHDLFKPM 304
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 520
G F DYI PKP+ YQSLHT V G +G LE+QIRT +MH AE+G+AAHW YKETG
Sbjct: 305 PGRFKDYIGLPKPNLYQSLHTTVVGLNGRPLEIQIRTLEMHHIAEYGIAAHWKYKETG 362
Score = 40.8 bits (94), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 716 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 775
+ K LR +L W+ L+ + + D++ +V + PNG+++ L G
Sbjct: 373 DEKFTWLRQLLDWQNDLKDDQEY--------VDNLKDNLFDDDVYVFT-PNGDVIALARG 423
Query: 776 STAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
+TA D A + VG + K +NG+ + + L++GDIVE+
Sbjct: 424 ATAVDFAYRIHTEVGNQMKGARINGRWSVLDQPLQNGDIVEI 465
>gi|326692698|ref|ZP_08229703.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Leuconostoc argentinum KCTC 3773]
Length = 745
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 130/423 (30%), Positives = 198/423 (46%), Gaps = 103/423 (24%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E+V+ A +A HH QFRK+G+PY+ H I ILA L K TV++G LHDVV
Sbjct: 26 EKVKLAYDWASELHHNQFRKSGEPYIIHPIQVAGILAEL-----KMDTATVISGYLHDVV 80
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNM 221
+D S+ IEE+FG +A+++ GV+++S I R E+LA+ N
Sbjct: 81 EDTPASIQDIEEKFGATIAQIIDGVTKISKIEYKNSR-------------EQLAE---NH 124
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRL----GLWALKAELEDLCFAVLQPQIFRKMRA 277
R + A++++ +I LA RL L AL+ E + R++ +
Sbjct: 125 RKLLL-------AMSKDIRVIIVKLADRLHNMRTLGALREEKQ------------RRIAS 165
Query: 278 DLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFD 336
+ +++P +R+G I+TI + +D + + D M +
Sbjct: 166 ETLDIYAPLADRLG----ISTI--------KWELEDLALSYLDPEKYYM-------IASQ 206
Query: 337 ILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGME 396
+ R +R +++ + A+T + + LE E
Sbjct: 207 MNMKRDERIQYVQE-------------------AVTEITQAIQDLELE-----------N 236
Query: 397 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 456
V++ R K +YSI+ KM K ++YD A+RV+ I Y++L +H
Sbjct: 237 VSVYGRPKHIYSIYRKMTDKHKAFEEIYDLSAVRVLT---------DTIPDTYAVLGAIH 287
Query: 457 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 516
W+P+ G F DYI PK +GYQSLHT V GP G LEVQIRT MHE AE G+AAHW Y
Sbjct: 288 SKWMPLPGRFKDYIALPKANGYQSLHTTVIGPSGRPLEVQIRTHNMHEVAEFGVAAHWAY 347
Query: 517 KET 519
K+
Sbjct: 348 KKN 350
>gi|154505866|ref|ZP_02042604.1| hypothetical protein RUMGNA_03408 [Ruminococcus gnavus ATCC 29149]
gi|336432177|ref|ZP_08612016.1| hypothetical protein HMPREF0991_01135 [Lachnospiraceae bacterium
2_1_58FAA]
gi|153793884|gb|EDN76304.1| RelA/SpoT family protein [Ruminococcus gnavus ATCC 29149]
gi|336019336|gb|EGN49062.1| hypothetical protein HMPREF0991_01135 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 768
Score = 165 bits (418), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 124/435 (28%), Positives = 206/435 (47%), Gaps = 101/435 (23%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA ++ AH Q RK+G+PY+ H + G ILA L + +T+VAG+LHD V+D
Sbjct: 54 IEKAYKLSREAHKEQVRKSGEPYIIHPLWVGIILADL-----EMDKETIVAGMLHDTVED 108
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
++ I EFG+EVA LV GV++L Q + ++L + N+R
Sbjct: 109 TEMTVEDITREFGEEVALLVDGVTKLG---------------QLSYSKDKLEVQAENLRK 153
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
++ A+A++ +I LA RL + L F V P ++ + ++
Sbjct: 154 MFL-------AMAKDIRVIIIKLADRL------HNMRTLEFMV--PAKQKEKARETMDIY 198
Query: 284 SP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLS--MKDLLEAVVPFDILSD 340
+P R+G S+ +T DD S + V +KDL E
Sbjct: 199 APIAQRLGISKI------------KTELDDLSLKYYQPEVYFQLVKDLNER--------- 237
Query: 341 RRKRTKFLHDL-AKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTL 399
+ +R +F+ + A+ S + A + + +
Sbjct: 238 KTEREEFVQQIVAEVSHHMENAHI--------------------------------QAKV 265
Query: 400 SSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLW 459
R+K +SI+ KM ++ + +VYD A+R++V +++ CY+ L ++H ++
Sbjct: 266 YGRVKHFFSIYKKMVNQNKTLDQVYDLFAVRIIV---------DSVKDCYAALGVIHEMY 316
Query: 460 IPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET 519
PI G F DYI PK + YQSLHT + GP G E+QIRT++MH+ AE+G+AAHW YKE+
Sbjct: 317 TPIPGRFKDYIAMPKANMYQSLHTTLMGPAGQPFEIQIRTEEMHKTAEYGIAAHWKYKES 376
Query: 520 GNKLQSISSMDESDI 534
G ++ S +E +
Sbjct: 377 GGSAKNNKSREEEKL 391
>gi|160903362|ref|YP_001568943.1| (p)ppGpp synthetase I SpoT/RelA [Petrotoga mobilis SJ95]
gi|160361006|gb|ABX32620.1| (p)ppGpp synthetase I, SpoT/RelA [Petrotoga mobilis SJ95]
Length = 712
Score = 165 bits (418), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 137/458 (29%), Positives = 218/458 (47%), Gaps = 93/458 (20%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E+++ A A+ +H GQFR +G+ + H G ILA L K VDT++AG+LHDVV
Sbjct: 26 ERIKIAYELAETSHSGQFRDSGEEFFEHPKSVGLILAGL-----KMDVDTIIAGLLHDVV 80
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNM 221
+D S+ I++ FG +VA +V+GV+++S L+ + R+N N L +
Sbjct: 81 EDCGVSIDKIKDLFGIDVANIVSGVTKISN----LKLNERLNEND--------MKSLEKV 128
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLAS 281
TI + A++++ +I LA RL + L F + QI +AD
Sbjct: 129 ETIRKM----LFAMSEDIRVIIVKLADRL------HNMRTLEFVDRKKQI---AKAD--- 172
Query: 282 MWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
T+ P+ R + MK+ LE LS R
Sbjct: 173 --------------ETLKIYAPIAHRLG------------IYKMKEELED------LSFR 200
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
+ DL K K+ + + L + +++EL ++ T+
Sbjct: 201 YLYPETYFDL--------KTKIEEKIRLGQNRLNEYAQIIKQELDNQK-----IKATVEG 247
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K LYSI+ KM RK + ++YD ALR++ D+N CY++L I+H +W P
Sbjct: 248 RSKHLYSIWDKMIRKGKTLDEIYDYIALRIITEDQNK---------CYAVLGIIHSIWSP 298
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE--T 519
+ G DYI PK +GY+SLHT V G LE+QIR +MHE AE+GLAAHW+YKE +
Sbjct: 299 VPGRIKDYIATPKFNGYKSLHTTVITHKGDPLEIQIRDWEMHEEAEYGLAAHWVYKEGVS 358
Query: 520 GNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQK 557
KL+ ++ + +E ++++ + ++T+L K
Sbjct: 359 QEKLKFLTDL----MELHRYIAQNAFELKDIETNLLSK 392
>gi|443315184|ref|ZP_21044689.1| (p)ppGpp synthetase, RelA/SpoT family [Leptolyngbya sp. PCC 6406]
gi|442785224|gb|ELR95059.1| (p)ppGpp synthetase, RelA/SpoT family [Leptolyngbya sp. PCC 6406]
Length = 762
Score = 165 bits (418), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 132/435 (30%), Positives = 200/435 (45%), Gaps = 99/435 (22%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
N E V +A FA H GQ R +G+PY+ H I +L L G A+ + AG LHD
Sbjct: 43 NSELVCRAFEFAYALHQGQMRASGEPYICHPIAVASLLRDL---GGDSAM--IAAGFLHD 97
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLH 219
+V+D + IE +FG EV +LV GV++LS N + R+
Sbjct: 98 IVEDTDVTPEEIEAQFGGEVRRLVEGVTKLSKFNFQSKTERQAE---------------- 141
Query: 220 NMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRAD 278
N R ++ A+AQ+ +I LA RL + L+ L+P+ R++ +
Sbjct: 142 NFRRMFL-------AMAQDARVIVVKLADRLHNMRTLEH---------LKPEKQRRIAQE 185
Query: 279 LASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLS-MKDLLEAVVPFD 336
+ +++P NR+G R + +D SF + M+D + +
Sbjct: 186 TSEIFAPLANRLGIGRFKWEL------------EDLSFKYLEPDAYRHMQDCVS-----E 228
Query: 337 ILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGME 396
+DR R + + A + +++AG+ +
Sbjct: 229 KRTDRESRLQLV--------AATLRERLEEAGVKV------------------------- 255
Query: 397 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 456
V +S R K LY I+ KM R+ H+++D A+RV+V +K+ CY L IVH
Sbjct: 256 VEVSGRPKHLYGIYRKMERQQKAFHEIFDVAAVRVIVHNKDE---------CYRTLAIVH 306
Query: 457 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 516
+ PI G F DYI PKP+ YQSLHT V G G +EVQIRT +MH AE+G+AAHW Y
Sbjct: 307 DAFRPIPGRFKDYIGLPKPNRYQSLHTVVLGNHGRPIEVQIRTLEMHHVAEYGIAAHWKY 366
Query: 517 KETGNKLQSISSMDE 531
KE+G + + D+
Sbjct: 367 KESGGSSNTQVTTDD 381
>gi|320334134|ref|YP_004170845.1| (p)ppGpp synthetase I SpoT/RelA [Deinococcus maricopensis DSM
21211]
gi|319755423|gb|ADV67180.1| (p)ppGpp synthetase I, SpoT/RelA [Deinococcus maricopensis DSM
21211]
Length = 748
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 138/434 (31%), Positives = 210/434 (48%), Gaps = 92/434 (21%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E++++A FA+ AH G RK+G+PY+TH + ILA L + D + AG LHD V
Sbjct: 17 EKIERAYEFARDAHDGVLRKSGEPYITHPVAVALILAELGMDT-----DAICAGFLHDTV 71
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNM 221
+D + IE+ FG +V ++V G +++S + + Q T ++ ++ L M
Sbjct: 72 EDTDVTFQQIEDHFGRDVRRIVEGETKVSKLTK-----------QTTSLQDQQSENLRQM 120
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLAS 281
A+ + +I LA RL MR L S
Sbjct: 121 LI----------AMTDDIRIIVVKLADRL----------------------HNMRT-LGS 147
Query: 282 MWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
M P + SR I + PL R + D LS K LE D+ R
Sbjct: 148 M-RPDKQQRISRETIEIYA--PLAHRLGIGQIKWELED---LSFK-YLEPEAYADLA--R 198
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
R RT+ + Q++A V +AL L EAL ++L + +I +++ +
Sbjct: 199 RLRTR---------QDQREAHV----KLALQQL---REALTEDLELP-EWIDNIDI--AG 239
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPA------------IQCCY 449
R K LYSI +KMR++ + +++D A+RV++ K ++ P + CY
Sbjct: 240 RSKHLYSIHTKMRKEGKALEQIFDLLAIRVILTPK--PVNAPEGKQKDRAEEVREKRVCY 297
Query: 450 SLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHG 509
L IVH +W PI G F DYI PKP+GYQSLHT V +G +EVQIR+++MHE AE+G
Sbjct: 298 HSLGIVHSMWTPIPGRFKDYIAVPKPNGYQSLHTTVISTEGQPIEVQIRSRRMHEVAEYG 357
Query: 510 LAAHWLYKETGNKL 523
+AAHW+YK+ G++L
Sbjct: 358 VAAHWMYKQ-GDRL 370
>gi|254527119|ref|ZP_05139171.1| RelA/SpoT family protein [Prochlorococcus marinus str. MIT 9202]
gi|221538543|gb|EEE40996.1| RelA/SpoT family protein [Prochlorococcus marinus str. MIT 9202]
Length = 769
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 141/430 (32%), Positives = 195/430 (45%), Gaps = 99/430 (23%)
Query: 100 NDEQ---VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
NDE + KA A +AH GQFR +G+PY+ H + +L + SS + AG+
Sbjct: 56 NDENQNLIAKAFKLAYKAHDGQFRASGEPYIIHPVAVANLLKEIGASSS-----VIAAGL 110
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELAD 216
LHDVV+D L IE FG EV LV GV++L I+ N T E
Sbjct: 111 LHDVVEDTGIDLCEIETNFGLEVKILVEGVTKLG----------GIHFNNRTEAQAE--- 157
Query: 217 RLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 276
N+R ++ A+A + ++ LA RL L D + +I R+ R
Sbjct: 158 ---NLRKMFL-------AMASDIRVVLVKLADRLHNMRTIEWLND----EKKLRIARETR 203
Query: 277 ADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFD-EHVLSMKDLLEAVVPF 335
A + NR+G +R + +D +F + + L +KD +
Sbjct: 204 EIYAPL---ANRLGINRF------------KWELEDLAFKFLEPKEYLDLKDQIAVK--- 245
Query: 336 DILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGM 395
SDR KR K +L K E LIS +
Sbjct: 246 --RSDREKRLKLTLNLMK------------------------------ENLISAG-LKNF 272
Query: 396 EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIV 455
E+T R K LY I+SKM R+ H++YD ALR++V D + CY L +V
Sbjct: 273 EIT--GRPKHLYGIWSKMERQQKHFHEIYDVAALRIIVDDSD---------SCYRALAVV 321
Query: 456 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 515
H + PI G F DYI PKP+GYQSLHT+V G +EVQIRT MH+ AE+G+AAHW
Sbjct: 322 HDTFKPIPGRFKDYIGLPKPNGYQSLHTSVIGRH-RPIEVQIRTTSMHQIAEYGIAAHWQ 380
Query: 516 YKETGNKLQS 525
YKE G+ +S
Sbjct: 381 YKEGGSPAKS 390
>gi|303232508|ref|ZP_07319195.1| putative GTP diphosphokinase [Atopobium vaginae PB189-T1-4]
gi|302481392|gb|EFL44465.1| putative GTP diphosphokinase [Atopobium vaginae PB189-T1-4]
Length = 829
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 134/437 (30%), Positives = 206/437 (47%), Gaps = 99/437 (22%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
++ +A FA AH Q R++G+PY+ H + ILA + D++ + ILHD V+
Sbjct: 93 RIDEAYDFASAAHKDQRRQSGEPYINHPVEVAFILAKDLHMDE----DSICSAILHDTVE 148
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMR 222
D +L IEE FG V +LV GV++L+ ++ ++ ++ N+R
Sbjct: 149 DTSATLDDIEERFGYTVRELVDGVTKLT------------SIEVSSMDEKQAL----NLR 192
Query: 223 TIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
++ A++++ +I LA RL MR LA++
Sbjct: 193 KMFL-------AMSKDIRVIIIKLADRL----------------------HNMRT-LAAL 222
Query: 283 WSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
P NR + + T V +P D S S+K LE + + D
Sbjct: 223 --PENRRTFKAKETRDVYAPLADRLGIS-------------SIKWELEDLAFLYLDHDEY 267
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
+R + + + S AQ++ + I LE EL + + V++ R
Sbjct: 268 QR---IARMVQQSRAQREQNITSTIHI-----------LEDEL----ARVGMQGVSIQGR 309
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVV---VGDKNGTLHGPAIQCCYSLLDIVHRLW 459
K L+SI+ KM RKD + +YD A+RV+ VGD CYS L VH +W
Sbjct: 310 PKHLWSIYQKMIRKDKNFNDIYDLIAIRVLTKTVGD------------CYSALGSVHTIW 357
Query: 460 IPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET 519
P+ G F DYI PKP+GY+SLHT V G D +E+QIRT +MH AE+G+AAHWLYK++
Sbjct: 358 HPLPGRFKDYIAMPKPNGYRSLHTTVIGIDARPIEIQIRTYEMHSQAEYGIAAHWLYKKS 417
Query: 520 GNKLQSISSMDESDIEA 536
G+ Q S DE +I++
Sbjct: 418 GSS-QGKMSRDEKEIDS 433
>gi|283795474|ref|ZP_06344627.1| GTP diphosphokinase [Clostridium sp. M62/1]
gi|291077138|gb|EFE14502.1| RelA/SpoT family protein [Clostridium sp. M62/1]
Length = 761
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 129/429 (30%), Positives = 203/429 (47%), Gaps = 95/429 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA A AH Q RK+G+PY+ H + ILA L + +T+VAGILHDVV+D
Sbjct: 46 VEKAYRLAFEAHKDQKRKSGEPYIIHPLCVAIILADL-----ELDKETIVAGILHDVVED 100
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+ + EFG EVA LV GV++L+ I + +++ + N+R
Sbjct: 101 TVMTTDGLAREFGAEVALLVDGVTKLTNI---------------SWDKDKVEMQAENLRK 145
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
++ A+A++ +I LA RL + L + ++P+ R+ + ++
Sbjct: 146 MFL-------AMAKDIRVILVKLADRL------HNMRTLQY--MKPEKQREKARETMDIY 190
Query: 284 SP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
+P +R+G SR I T + L + E + E + KD EA V
Sbjct: 191 APIADRLGISR-IKTELDDLAL---KYLEPEVYYELSEKISLRKDAREAFV--------- 237
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
K + D KS + DAGI E + R
Sbjct: 238 ---KGIVDEVKSH--------MDDAGI--------------------------ECKVDGR 260
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
+K +SI+ KM +++ + ++YD A+R++V ++ CY+ L ++H L+ PI
Sbjct: 261 VKHFFSIYKKMVKQNKTLDQIYDLFAVRIIVD---------TVKDCYAALGVIHELYKPI 311
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
G F DYI PK + YQSLHT + G G E+QIRT +MH AE+G+AAHW YKE+G+
Sbjct: 312 PGRFKDYIAMPKINNYQSLHTTLIGSSGQPFEIQIRTYEMHRVAEYGIAAHWKYKESGST 371
Query: 523 LQSISSMDE 531
++ S +E
Sbjct: 372 KAAMDSAEE 380
>gi|295091158|emb|CBK77265.1| (p)ppGpp synthetase, RelA/SpoT family [Clostridium cf.
saccharolyticum K10]
Length = 761
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 129/429 (30%), Positives = 203/429 (47%), Gaps = 95/429 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA A AH Q RK+G+PY+ H + ILA L + +T+VAGILHDVV+D
Sbjct: 46 VEKAYRLAFEAHKDQKRKSGEPYIIHPLCVAIILADL-----ELDKETIVAGILHDVVED 100
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+ + EFG EVA LV GV++L+ I + +++ + N+R
Sbjct: 101 TVMTTDGLAREFGAEVALLVDGVTKLTNI---------------SWDKDKVEMQAENLRK 145
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
++ A+A++ +I LA RL + L + ++P+ R+ + ++
Sbjct: 146 MFL-------AMAKDIRVILVKLADRL------HNMRTLQY--MKPEKQREKARETMDIY 190
Query: 284 SP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
+P +R+G SR I T + L + E + E + KD EA V
Sbjct: 191 APIADRLGISR-IKTELDDLAL---KYLEPEVYYELSEKISLRKDAREAFV--------- 237
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
K + D KS + DAGI E + R
Sbjct: 238 ---KGIVDEVKSH--------MDDAGI--------------------------ECKVDGR 260
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
+K +SI+ KM +++ + ++YD A+R++V ++ CY+ L ++H L+ PI
Sbjct: 261 VKHFFSIYKKMVKQNKTLDQIYDLFAVRIIVD---------TVKDCYAALGVIHELYKPI 311
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
G F DYI PK + YQSLHT + G G E+QIRT +MH AE+G+AAHW YKE+G+
Sbjct: 312 PGRFKDYIAMPKINNYQSLHTTLIGSSGQPFEIQIRTYEMHRVAEYGIAAHWKYKESGST 371
Query: 523 LQSISSMDE 531
++ S +E
Sbjct: 372 KAAMDSAEE 380
>gi|358466796|ref|ZP_09176585.1| hypothetical protein HMPREF9093_01060 [Fusobacterium sp. oral taxon
370 str. F0437]
gi|357068679|gb|EHI78668.1| hypothetical protein HMPREF9093_01060 [Fusobacterium sp. oral taxon
370 str. F0437]
Length = 725
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 121/423 (28%), Positives = 196/423 (46%), Gaps = 100/423 (23%)
Query: 99 FNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILH 158
++ +++ A+AFA+ +H GQ+RK+GD Y+ H + +IL + K DTVVAG+LH
Sbjct: 19 YDFNKLKLALAFAEESHKGQYRKSGDDYIVHPVEVAKILMDM-----KMDTDTVVAGLLH 73
Query: 159 DVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRL 218
DVV+D + I+ FGD VA LV GV++L + GT E
Sbjct: 74 DVVEDTLIPIADIKYNFGDTVAILVDGVTKLKALPN------------GTKNQAE----- 116
Query: 219 HNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRAD 278
N+R + A+A+ +I LA RL + L F ++P+ + + +
Sbjct: 117 -NIRKMIL-------AMAENIRVILIKLADRL------HNMRTLKF--MKPEKQQTISKE 160
Query: 279 LASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFD-EHVLSMKDLLEAVVPFD 336
+++P +R+G ++ ++ +D +F+ E L +K L+E
Sbjct: 161 TLDIYAPLAHRLGMAKI------------KSELEDLAFSYLHHEEYLEIKKLVE------ 202
Query: 337 ILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGME 396
+ + +R ++ + ++ + L L G++
Sbjct: 203 --NTKEERKDYIENFIRTMKR------------TLVDL-------------------GLK 229
Query: 397 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 456
+ R K YSI+ KM +K +YD +RV+V DK CY +L IVH
Sbjct: 230 AEVKGRFKHFYSIYRKMYQKGKEFDDIYDLMGVRVIVEDK---------AACYHVLGIVH 280
Query: 457 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 516
+ P+ G F DYI PK + YQS+HT + GP G +E+QIRT+ M + AE G+AAHW Y
Sbjct: 281 SQYTPVPGRFKDYIAVPKSNNYQSIHTTIVGPLGKFIEIQIRTKDMDDIAEEGIAAHWNY 340
Query: 517 KET 519
KE
Sbjct: 341 KEN 343
>gi|406944952|gb|EKD76584.1| hypothetical protein ACD_43C00052G0002 [uncultured bacterium]
Length = 477
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 134/459 (29%), Positives = 209/459 (45%), Gaps = 103/459 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ +A FA+ AH GQ RK+G PY H T LA + +T+ AG+LHDV +D
Sbjct: 22 IDRAYQFAEHAHEGQMRKSGAPYFEHPQATAYKLAAF-----RMDDETIAAGLLHDVPED 76
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L I++EFG E+A LV GV++L G L + + + N+R
Sbjct: 77 TTHTLHEIKKEFGSEIAFLVEGVTKL-----------------GQLKYRGMQRYVENLRR 119
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
++ A+A++ +I A R+ LE L A L P+ R++ + ++
Sbjct: 120 MFV-------AMAKDIRVIVIKFADRMH------NLETL--AALPPEKARRIALESLEIY 164
Query: 284 SP-RNRVGYSRRITTIVSSPPLDERTASDDESFT-TFDEHVLSMKDLLEAVVPFDILSDR 341
+P NR+G D R +D +F + E + +E R
Sbjct: 165 APIANRLGMG------------DVRGQLEDLAFPYVYPEEYQWLLKKIEVT--------R 204
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
R++ K + L E E L+ ++P +++
Sbjct: 205 REKEKTMERLRN----------------------------EVEKLLREHHVPY--ISVHG 234
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K LYS + K+ + + +VYD ALR+VV D + CY L +VH++ P
Sbjct: 235 RAKHLYSTYKKLLLHNRDLTQVYDLVALRIVVSD---------VSKCYETLGLVHKICTP 285
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ G DYI PKP+GY+SLHT V G E+QIRT +MH+ AE+G+AAHW YKE+G+
Sbjct: 286 LKGRIKDYIAQPKPNGYRSLHTTVFTQSGEIAEIQIRTPEMHDEAEYGIAAHWHYKESGH 345
Query: 522 KLQSISSMDESDIEASSSLSKDTDDHN----PLDTDLFQ 556
IS+ + +E + L K+ D + L D+FQ
Sbjct: 346 G-GEISNEKFAWVEQLAKLQKEIKDDSQYLESLKIDIFQ 383
>gi|71908440|ref|YP_286027.1| RelA/SpoT protein [Dechloromonas aromatica RCB]
gi|71848061|gb|AAZ47557.1| RelA/SpoT protein [Dechloromonas aromatica RCB]
Length = 740
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 137/448 (30%), Positives = 215/448 (47%), Gaps = 84/448 (18%)
Query: 86 FIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSG 145
F+V D G P + E+++KA+ +A + + +G+ +H + I+A L
Sbjct: 17 FLVTLTD--GVPPADAERLKKAVEYAWEVYGDRTLGSGERIWSHALGMAVIIAGL----- 69
Query: 146 KRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN 205
K V++ +A +L + + SIE FG A LV G+SRL+ + + + IN+
Sbjct: 70 KLDVESRIAAVLFAIPSHDEHGITSIESRFGKPAAHLVHGISRLNRLRPITKGFVAINIE 129
Query: 206 QGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFA 265
G + E+ ++ +R + A+ ++ ++ LASR + L F
Sbjct: 130 AGEINPAEMKAQVEVLRKMLL-------AMVEDIRVVLLRLASRT---------QTLRFY 173
Query: 266 VLQPQIFR-KMRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVL 323
P R ++ + ++SP NR+G V
Sbjct: 174 AAHPDELRVQVARETLELYSPLANRLG-------------------------------VW 202
Query: 324 SMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEK 383
+K LE + I D K+ + D +S ++ K + DA + V E
Sbjct: 203 ELKWELEDLSFRFIHPDTYKKIAKMLDEKRS----EREKFIVDA----VARVRGE----- 249
Query: 384 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 443
+ + + G EV R K +YSI++KMR+KDV +VYD RALR++V D
Sbjct: 250 ---LEAAGVKGAEVY--GRPKHIYSIWNKMRKKDVEFSEVYDVRALRIIVDD-------- 296
Query: 444 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 503
++ CY+ L IVH LW+PI EFDDYI NPK + Y+SLHTAV+ PDG +LE+QIRT +MH
Sbjct: 297 -LKDCYTALGIVHNLWLPIPREFDDYISNPKGNYYRSLHTAVRCPDGRSLEIQIRTAEMH 355
Query: 504 EYAEHGLAAHWLYKETGNKLQSISSMDE 531
++AE G+AAHW YKE G+K + DE
Sbjct: 356 KHAELGVAAHWRYKE-GSKRTTEDDYDE 382
>gi|390629433|ref|ZP_10257428.1| GTP diphosphokinase [Weissella confusa LBAE C39-2]
gi|390485337|emb|CCF29776.1| GTP diphosphokinase [Weissella confusa LBAE C39-2]
Length = 744
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 149/473 (31%), Positives = 214/473 (45%), Gaps = 105/473 (22%)
Query: 93 VTGYPIFNDEQVQK---AIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAV 149
V GY N++ V+K A FA H Q RK+G+PY+ H I ILA L
Sbjct: 16 VAGY--MNEDHVKKVDKAYDFAYNLHKEQKRKSGEPYIIHPIQVAGILADLHMDP----- 68
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
DTVVAG LHDVV+D +L +E EFG +VA +V GVS+LS I R
Sbjct: 69 DTVVAGYLHDVVEDTEATLEDVEREFGHDVAVIVDGVSKLSKIEYKSSR----------- 117
Query: 210 GHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 269
E+LA+ N R + A++ + +I LA RL
Sbjct: 118 --EQLAE---NHRKLLL-------AMSHDIRVIIVKLADRL------------------- 146
Query: 270 QIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLL 329
MR A + R+ T+ PL +R ++++K L
Sbjct: 147 ---HNMRTLSALREEKQKRIASE----TLEIYAPLADRLG------------IMTIKWEL 187
Query: 330 EAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLIST 389
E +S R + HD+AKS + +++ ++ I ++ E+A+ EL +
Sbjct: 188 ED------MSLRYLEPEAYHDIAKSMQLRRQERL----EIVDQAVNDIEQAI-TELHLQH 236
Query: 390 SYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCY 449
+ + G R K +YSI+ KM K ++YD A+RV+V I Y
Sbjct: 237 AEVYG-------RPKHIYSIYRKMVDKKKKFDEIYDLLAIRVLVD---------TIPETY 280
Query: 450 SLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHG 509
++L +H W P+ G F DYI PK +GYQSLHT+V GP G LEVQIRT +MHE AE G
Sbjct: 281 AVLGAIHARWTPMPGRFKDYIALPKANGYQSLHTSVIGPGGRPLEVQIRTYQMHEVAEFG 340
Query: 510 LAAHWLYKETGNKLQSISSMDESDIEASSSL------SKDTDDH-NPLDTDLF 555
+AAHW YKE + + D+ + + ++D DD + DLF
Sbjct: 341 VAAHWAYKEGNFAGADVQNADQQKLNVIQGILELQEDARDADDFMESVKGDLF 393
>gi|332637871|ref|ZP_08416734.1| GTP pyrophosphokinase [Weissella cibaria KACC 11862]
Length = 744
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 150/473 (31%), Positives = 213/473 (45%), Gaps = 105/473 (22%)
Query: 93 VTGYPIFNDEQVQK---AIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAV 149
V GY N+E V+K A FA H Q RK+G+PY+ H I ILA L
Sbjct: 16 VAGY--MNEEHVKKVDKAYDFACNLHQEQKRKSGEPYIIHPIQVAGILADLHMDP----- 68
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
DTVVAG LHDVV+D +L +E EFG +VA +V GVS+LS I R
Sbjct: 69 DTVVAGYLHDVVEDTDATLEDVEREFGHDVAVIVDGVSKLSKIEYKSSR----------- 117
Query: 210 GHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 269
E+LA+ N R + A++ + +I LA RL
Sbjct: 118 --EQLAE---NHRKLLL-------AMSHDIRVIIVKLADRL------------------- 146
Query: 270 QIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLL 329
MR A + R+ T+ PL +R ++++K L
Sbjct: 147 ---HNMRTLSALREEKQKRIASE----TLEIYAPLADRLG------------IMTIKWEL 187
Query: 330 EAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLIST 389
E +S R + HD+AKS + +++ ++ I ++ E A+ EL +
Sbjct: 188 ED------MSLRYLEPEAYHDIAKSMQLRRQERL----EIVDQAVDDIEHAI-TELHLKH 236
Query: 390 SYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCY 449
+ + G R K +YSI+ KM K ++YD A+RV+V I Y
Sbjct: 237 AEVYG-------RPKHIYSIYRKMVDKKKKFDEIYDLLAIRVLVD---------TIPETY 280
Query: 450 SLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHG 509
++L +H W P+ G F DYI PK +GYQSLHT+V GP G LEVQIRT +MHE AE G
Sbjct: 281 AVLGAIHARWTPMPGRFKDYIALPKANGYQSLHTSVIGPGGRPLEVQIRTYQMHEVAEFG 340
Query: 510 LAAHWLYKETGNKLQSISSMDESDIEASSSL------SKDTDDH-NPLDTDLF 555
+AAHW YKE + + D+ + + ++D DD + DLF
Sbjct: 341 VAAHWAYKEGNFAGADVQNADQQKLNVIQGILELQEDARDADDFMESVKGDLF 393
>gi|359412257|ref|ZP_09204722.1| (p)ppGpp synthetase I, SpoT/RelA [Clostridium sp. DL-VIII]
gi|357171141|gb|EHI99315.1| (p)ppGpp synthetase I, SpoT/RelA [Clostridium sp. DL-VIII]
Length = 736
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 129/421 (30%), Positives = 203/421 (48%), Gaps = 99/421 (23%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
+ V++A FA++AH Q R++G+PY+ H I ILA L + +T+VAG+LHDV+
Sbjct: 19 DMVKRAYNFAEKAHKEQKRESGEPYIIHPIAVAEILAELGMDT-----NTIVAGLLHDVI 73
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNM 221
+D S F E+A LV GV++L+ + ++ + + E+ AD + M
Sbjct: 74 EDTDCSYDETVNLFNAEIADLVDGVTKLTKLGEMEYKTK----------EEQQADNVRKM 123
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRA-DL 279
A+A++ +I LA RL + LK P+ +K +A +
Sbjct: 124 LL----------AMAKDIRVIIIKLADRLHNMRTLK----------FMPEKKQKNKAKET 163
Query: 280 ASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDIL 338
+++P +R+G S+ + +D F E K+ E V D +
Sbjct: 164 LDIYAPLAHRLGMSKI------------KWELEDLCFRYLHE-----KEYYELV---DSI 203
Query: 339 SDRR-KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEV 397
+++R +R ++ D +V D EE LE G++
Sbjct: 204 AEKRVERETYIKD------------IVSD----------LEEKLEA---------AGIQS 232
Query: 398 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 457
+ R K YSI+ KM K+ I +++D A+RV+V +++ CY +L IVH
Sbjct: 233 DIDGRPKHFYSIYKKMVSKNKSIEQIFDLTAIRVLVN---------SVKDCYGVLGIVHT 283
Query: 458 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 517
++ PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAHW YK
Sbjct: 284 IYRPIPGRFKDYIAMPKPNMYQSLHTTVIGPQGKTFEIQIRTFEMHKTAEYGIAAHWKYK 343
Query: 518 E 518
E
Sbjct: 344 E 344
>gi|451819384|ref|YP_007455585.1| GTP pyrophosphokinase RelA [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451785363|gb|AGF56331.1| GTP pyrophosphokinase RelA [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 737
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 124/421 (29%), Positives = 201/421 (47%), Gaps = 99/421 (23%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
+ V+KA FA+ AH Q R++G+PY+ H I ILA L + +T+VAG+LHDV+
Sbjct: 19 DMVKKAYYFAEDAHKEQKRQSGEPYIIHPIAVAEILAELGMDT-----NTIVAGLLHDVI 73
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNM 221
+D S + F +E+ L+ GV++L+ + ++ + + E+ AD + M
Sbjct: 74 EDTEFSYEETVKLFNEEIGNLIEGVTKLTRLGEMEYKTK----------EEQQADNVRKM 123
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRA-DL 279
A+A++ +I LA RL + LK P+ +K +A +
Sbjct: 124 LL----------AMAKDIRVIIIKLADRLHNMRTLK----------FMPEKKQKNKAKET 163
Query: 280 ASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDIL 338
+++P +R+G S+ + +D F E K+ E V D +
Sbjct: 164 LDIYAPLAHRLGMSKI------------KWELEDLCFRYLHE-----KEYYELV---DSI 203
Query: 339 SDRR-KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEV 397
+++R +R ++ D+ A+ +A G+E
Sbjct: 204 AEKRVERETYIKDIVDDLYAKLQA-------------------------------AGIES 232
Query: 398 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 457
+ R K YSI+ KM K+ I +++D A+R++V +++ CY +L IVH
Sbjct: 233 DIDGRPKHFYSIYKKMVNKNKSIEQIFDLTAIRILVN---------SVKDCYGVLGIVHT 283
Query: 458 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 517
++ PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAHW YK
Sbjct: 284 IYRPIPGRFKDYIAMPKPNMYQSLHTTVIGPQGKTFEIQIRTFEMHKTAEYGIAAHWKYK 343
Query: 518 E 518
E
Sbjct: 344 E 344
>gi|428297512|ref|YP_007135818.1| (p)ppGpp synthetase I SpoT/RelA [Calothrix sp. PCC 6303]
gi|428234056|gb|AFY99845.1| (p)ppGpp synthetase I, SpoT/RelA [Calothrix sp. PCC 6303]
Length = 758
Score = 164 bits (414), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 131/418 (31%), Positives = 193/418 (46%), Gaps = 99/418 (23%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A FA + H GQ+RK+G+PY+ H + +L L G A+ + AG LHDVV+D
Sbjct: 46 RAFIFAYQLHQGQYRKSGEPYIYHPVAVAGLLRDL---GGSPAM--IAAGFLHDVVEDTE 100
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTIY 225
++ IE +FG+EV +LV GV++LS +IN T G E N R ++
Sbjct: 101 VTVEDIESKFGEEVRRLVEGVTKLS----------KINFKSKTEGQAE------NFRRMF 144
Query: 226 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP 285
A+AQ+ +I LA RL V+ + R+ + +++P
Sbjct: 145 L-------AMAQDIRVIVVKLADRLH--------NMRTMEVMSEESRRRNAQETRDIYAP 189
Query: 286 -RNRVGYSRRITTIVSSPPLDERTAS--DDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
NR+G R L++ + +SF +HV +D R
Sbjct: 190 LANRLGIWR------FKWELEDLAFKYLEPQSFREMQKHVAEKRDA------------RE 231
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
R K + D+ ++ + +AGI T + S R
Sbjct: 232 DRLKTVSDMLRTR--------MVEAGIQCTDI-------------------------SGR 258
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K LYSIF KM+R++ +++YD A+RV+V + CY L ++H ++ PI
Sbjct: 259 PKHLYSIFQKMQRQNKEFNEIYDLAAIRVIVTTN---------EECYRALAVLHDVFRPI 309
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 520
G F DYI PK + YQSLHT V P G LE QIRT +MH AE+G+AAHW YKETG
Sbjct: 310 PGRFKDYIGLPKSNRYQSLHTGVISPWGRPLEAQIRTLEMHRIAEYGIAAHWKYKETG 367
Score = 39.3 bits (90), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 716 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 775
+ K +R +L W+ L+ S K N D V V P G+++ L +G
Sbjct: 378 DEKFTWVRQLLEWQNDLKDAQEYMDSI---KNNLFEDDVY------VFTPKGDLVALSAG 428
Query: 776 STAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
ST+ D A + VG VNG+++ +T+L++GDIVE+
Sbjct: 429 STSVDFAYRIHSEVGNHCGGAKVNGRMIPLSTKLQNGDIVEI 470
>gi|403515171|ref|YP_006655991.1| PpGpp synthetase [Lactobacillus helveticus R0052]
gi|403080609|gb|AFR22187.1| PpGpp synthetase [Lactobacillus helveticus R0052]
Length = 746
Score = 164 bits (414), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 130/424 (30%), Positives = 197/424 (46%), Gaps = 101/424 (23%)
Query: 99 FNDEQV---QKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
ND+QV +KA FA +AH GQ R +G PY+ H LA L DT+ AG
Sbjct: 20 MNDDQVAFVEKAYEFANKAHAGQKRASGQPYIIHPTQVAGTLATLGLDP-----DTIAAG 74
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
LHD V+D + ++E+FG++VA +V GV++L+ H+E
Sbjct: 75 FLHDTVEDTPVTNDELKEKFGEDVAFIVDGVTKLNKYE--------------YKSHQEFL 120
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRK 274
H I A+A++ +I LA RL + L+ L+P R+
Sbjct: 121 AENHRKMLI---------AMAKDLRVIMVKLADRLHNMHTLQH---------LRPDKQRR 162
Query: 275 MRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVV 333
+ ++ +++P +R+G I TI + +D SF H L+ + V
Sbjct: 163 IASETMDIYAPLADRLG----IGTI--------KWELEDMSF-----HYLNPEAYYRIVN 205
Query: 334 PFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIP 393
D+ R +R K++ D K+ + K + + GI
Sbjct: 206 LMDV--KRSQREKYIADTIKTLK-----KTLDELGI------------------------ 234
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
+ + R K +YSI+ KM K ++YD A+RV+V + ++ CY++L
Sbjct: 235 --KYEIYGRPKHIYSIYKKMVNKHKDFDEIYDLLAVRVIVKN---------VRDCYAVLG 283
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT++MHE AE+G+AAH
Sbjct: 284 AVHTEWKPMPGRFKDYIAMPKVNGYQSLHTTIIGPGGRPLEIQIRTEQMHEVAEYGVAAH 343
Query: 514 WLYK 517
W YK
Sbjct: 344 WAYK 347
>gi|315038166|ref|YP_004031734.1| ppGpp synthetase [Lactobacillus amylovorus GRL 1112]
gi|325956617|ref|YP_004292029.1| ppGpp synthetase [Lactobacillus acidophilus 30SC]
gi|385817505|ref|YP_005853895.1| ppGpp synthetase [Lactobacillus amylovorus GRL1118]
gi|312276299|gb|ADQ58939.1| ppGpp synthetase [Lactobacillus amylovorus GRL 1112]
gi|325333182|gb|ADZ07090.1| ppGpp synthetase [Lactobacillus acidophilus 30SC]
gi|327183443|gb|AEA31890.1| ppGpp synthetase [Lactobacillus amylovorus GRL1118]
Length = 746
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 134/442 (30%), Positives = 206/442 (46%), Gaps = 102/442 (23%)
Query: 99 FNDEQV---QKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
ND+QV +KA FA +AH GQ R +G PY+ H LA L DTV AG
Sbjct: 20 MNDKQVAFVEKAYEFANKAHAGQKRASGQPYIIHPTQVAGTLATLGLDP-----DTVAAG 74
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
LHD V+D + ++E+FG++VA +V GV++L+ H+E
Sbjct: 75 FLHDTVEDTPVTNDELKEKFGEDVAFIVDGVTKLNKYE--------------YKSHQEFL 120
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRK 274
H I A+A++ +I LA RL + L+ L+P R+
Sbjct: 121 AENHRKMLI---------AMAKDLRVIMVKLADRLHNMHTLQH---------LRPDKQRR 162
Query: 275 MRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVV 333
+ ++ +++P +R+G I TI + +D SF H L+ + V
Sbjct: 163 IASETMDIYAPLADRLG----IGTI--------KWELEDMSF-----HYLNPEAYYRIVN 205
Query: 334 PFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIP 393
D+ R +R K++ D K+ + K + + GI
Sbjct: 206 LMDV--KRSQREKYIADTIKTLK-----KTLDELGI------------------------ 234
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
+ + R K +YSI+ KM K ++YD A+RV+V + ++ CY++L
Sbjct: 235 --KYEIYGRPKHIYSIYKKMVNKHKDFDEIYDLLAVRVIVKN---------VRDCYAVLG 283
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT+ MH+ AE+G+AAH
Sbjct: 284 AVHTEWKPMPGRFKDYIAMPKVNGYQSLHTTIIGPGGRPLEIQIRTEAMHQVAEYGVAAH 343
Query: 514 WLYKETG-NKLQSISSMDESDI 534
W YK N +++ SS ++ D+
Sbjct: 344 WAYKRGNFNGVEATSSGEKLDM 365
>gi|418045100|ref|ZP_12683196.1| (p)ppGpp synthetase I, SpoT/RelA [Thermotoga maritima MSB8]
gi|351678182|gb|EHA61329.1| (p)ppGpp synthetase I, SpoT/RelA [Thermotoga maritima MSB8]
Length = 714
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 128/415 (30%), Positives = 195/415 (46%), Gaps = 92/415 (22%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
KA FA+ H GQ R +G+P++TH + +ILA L V T+VA +LHDVV+D
Sbjct: 36 KAYEFARIVHEGQKRFSGEPFITHPVEVTKILAGLGVD-----VTTLVAALLHDVVEDGE 90
Query: 166 E-SLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTI 224
SL I++EFG EVA++V GV+++S IN + R + D + TI
Sbjct: 91 NVSLDQIKKEFGPEVARIVDGVTKVSNINAPIGRDQ---------------DSRKKIETI 135
Query: 225 YALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWS 284
+ A+A++ +I+ LA RL ++D P+ R + +++
Sbjct: 136 QKM----FFAMAEDMRVIFVKLADRLHNMRTIHYVQD-------PEKKRYKAYETLEIYA 184
Query: 285 PRNRVGYSRRITTIVSSPPLDERTASDDESFTT-FDEHVLSMKDLLEAVVPFDILSDRRK 343
P + + I +I ++ +D +F + E +K+L+ + +R K
Sbjct: 185 P---LAHKLGIYSI--------KSELEDLAFKVLYPEEYYKIKELVA-----EKRKEREK 228
Query: 344 RTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRL 403
RT L KS+ + K K + + R
Sbjct: 229 RTNEYISLLKSALEEHKIKAI----------------------------------VEGRY 254
Query: 404 KSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPID 463
K YSI+ KM+ K ++YD ALRV+V D + CY++L IVH +W P+
Sbjct: 255 KHYYSIWRKMKEKGKKFEEIYDLIALRVIVKD---------VTTCYTVLGIVHNIWKPLP 305
Query: 464 GEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
G F DYI PK +GY+SLHT V G LE+QIR ++MH AE+GL AHW+YKE
Sbjct: 306 GRFKDYIAAPKSNGYRSLHTTVITGYGEPLEIQIRDEEMHREAEYGLIAHWIYKE 360
>gi|417007457|ref|ZP_11945369.1| ppGpp synthetase [Lactobacillus helveticus MTCC 5463]
gi|328467645|gb|EGF38700.1| ppGpp synthetase [Lactobacillus helveticus MTCC 5463]
Length = 746
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 131/424 (30%), Positives = 197/424 (46%), Gaps = 101/424 (23%)
Query: 99 FNDEQV---QKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
ND+QV +KA FA +AH GQ R +G PY+ H LA L DT+VAG
Sbjct: 20 MNDDQVAFVEKAYEFANKAHAGQKRASGQPYIIHPTQVAGTLATLGLDP-----DTIVAG 74
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
LHD V+D + ++E+FG++VA +V GV++L+ H+E
Sbjct: 75 FLHDTVEDTPVTNDELKEKFGEDVAFIVDGVTKLNKYE--------------YKSHQEFL 120
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRK 274
H I A+A++ +I LA RL + L+ L+P R
Sbjct: 121 AENHRKMLI---------AMAKDLRVIMVKLADRLHNMHTLQH---------LRPDKQRW 162
Query: 275 MRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVV 333
+ ++ +++P +R+G I TI + +D SF H L+ + V
Sbjct: 163 ISSETMDIYAPLADRLG----IGTI--------KWELEDMSF-----HYLNPEAYYRIVN 205
Query: 334 PFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIP 393
D+ R +R K++ D K+ + K + + GI
Sbjct: 206 LMDV--KRSQREKYIADTIKTLK-----KTLDELGI------------------------ 234
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
+ + R K +YSI+ KM K ++YD A+RV+V + ++ CY++L
Sbjct: 235 --KYEIYGRPKHIYSIYKKMVNKHKDFDEIYDLLAVRVIVKN---------VRDCYAVLG 283
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT++MHE AE+G+AAH
Sbjct: 284 AVHTEWKPMPGRFKDYIAMPKVNGYQSLHTTIIGPGGRPLEIQIRTEQMHEVAEYGVAAH 343
Query: 514 WLYK 517
W YK
Sbjct: 344 WAYK 347
>gi|15643492|ref|NP_228538.1| (p)ppGpp synthetase [Thermotoga maritima MSB8]
gi|4981255|gb|AAD35811.1|AE001744_1 (p)ppGpp synthetase [Thermotoga maritima MSB8]
Length = 751
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 128/415 (30%), Positives = 195/415 (46%), Gaps = 92/415 (22%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
KA FA+ H GQ R +G+P++TH + +ILA L V T+VA +LHDVV+D
Sbjct: 73 KAYEFARIVHEGQKRFSGEPFITHPVEVTKILAGLGVD-----VTTLVAALLHDVVEDGE 127
Query: 166 E-SLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTI 224
SL I++EFG EVA++V GV+++S IN + R + D + TI
Sbjct: 128 NVSLDQIKKEFGPEVARIVDGVTKVSNINAPIGRDQ---------------DSRKKIETI 172
Query: 225 YALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWS 284
+ A+A++ +I+ LA RL ++D P+ R + +++
Sbjct: 173 QKM----FFAMAEDMRVIFVKLADRLHNMRTIHYVQD-------PEKKRYKAYETLEIYA 221
Query: 285 PRNRVGYSRRITTIVSSPPLDERTASDDESFTT-FDEHVLSMKDLLEAVVPFDILSDRRK 343
P + + I +I ++ +D +F + E +K+L+ + +R K
Sbjct: 222 P---LAHKLGIYSI--------KSELEDLAFKVLYPEEYYKIKELVA-----EKRKEREK 265
Query: 344 RTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRL 403
RT L KS+ + K K + + R
Sbjct: 266 RTNEYISLLKSALEEHKIKAI----------------------------------VEGRY 291
Query: 404 KSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPID 463
K YSI+ KM+ K ++YD ALRV+V D + CY++L IVH +W P+
Sbjct: 292 KHYYSIWRKMKEKGKKFEEIYDLIALRVIVKD---------VTTCYTVLGIVHNIWKPLP 342
Query: 464 GEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
G F DYI PK +GY+SLHT V G LE+QIR ++MH AE+GL AHW+YKE
Sbjct: 343 GRFKDYIAAPKSNGYRSLHTTVITGYGEPLEIQIRDEEMHREAEYGLIAHWIYKE 397
>gi|189425343|ref|YP_001952520.1| (p)ppGpp synthetase I SpoT/RelA [Geobacter lovleyi SZ]
gi|189421602|gb|ACD96000.1| (p)ppGpp synthetase I, SpoT/RelA [Geobacter lovleyi SZ]
Length = 716
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 134/436 (30%), Positives = 200/436 (45%), Gaps = 103/436 (23%)
Query: 87 IVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGK 146
I+D V VT P + ++KA + + H GQ R +G+PY+ H + +LA L K
Sbjct: 7 ILDTV-VTYNPSADLNLIRKAYVYCAKVHQGQTRLSGEPYIIHPLEVAGLLAGL-----K 60
Query: 147 RAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQ 206
V ++V G LHD ++D + + E FG EVA+LV GV+++S I+ + NQ
Sbjct: 61 LDVPSIVTGFLHDTIEDTLTTSEELAEMFGKEVAELVDGVTKISKIHFKTKEE-----NQ 115
Query: 207 GTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAV 266
N R + A+A + +I LA RL + L F
Sbjct: 116 A-----------ENFRKMLI-------AMANDIRVILVKLADRL------HNMRTLQFQP 151
Query: 267 LQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMK 326
Q R + + +++P + + I+ I +T +D SF
Sbjct: 152 DTKQ--RSISRETMDIYAP---IAHRLGISWI--------KTELEDLSFR---------- 188
Query: 327 DLLEAVVPFD----ILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALE 382
L+ V FD I +++R F+H++ +EA+
Sbjct: 189 -YLQPDVYFDLATKIQRKKQERESFIHEI--------------------------QEAIR 221
Query: 383 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 442
++L+ I G +S R K LYSI+ KM ++ V ++YD ALR++V D
Sbjct: 222 QKLV--EHQIVG---EVSGRSKHLYSIYRKMEKRKVDFEEIYDLTALRILVDD------- 269
Query: 443 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 502
I+ CY +L ++H W PI G F DYI PK + YQSLHT V GP G +EVQIRT +M
Sbjct: 270 --IKSCYEVLGLIHSSWRPIPGRFKDYIAMPKGNMYQSLHTTVIGPHGDRMEVQIRTHEM 327
Query: 503 HEYAEHGLAAHWLYKE 518
H AE G+AAHW YKE
Sbjct: 328 HRVAEAGIAAHWKYKE 343
>gi|204789670|gb|ACI02046.1| hypothetical protein [uncultured bacterium]
Length = 742
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 122/420 (29%), Positives = 198/420 (47%), Gaps = 97/420 (23%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA A +AH Q RK+G+PY+ H + ILA L + +++VAG+LHDVV+D
Sbjct: 30 IEKAYNIASKAHAKQLRKSGEPYIVHPLCVAIILADL-----QLDKESIVAGLLHDVVED 84
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+ IE EFG +VA +V GV++L +I N L ++ N+R
Sbjct: 85 TVMTDEDIEREFGPDVALIVDGVTKLE----------KIKYNNDKLEYQA-----ENLRR 129
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK-MRADLASM 282
++ A+A++ +I LA RL ++ QP+ +K + + +
Sbjct: 130 MFI-------AMAKDIRVIMVKLADRL---------HNMRTLSHQPEAKQKEIAKETMDI 173
Query: 283 WSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
++P R+G S+ + DD S + V +DL++ I +
Sbjct: 174 YAPLAQRLGISKV------------KVELDDLSLKYLEPEVY--RDLVDK-----IAVRK 214
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
R F+ D +V + A+++ G++ +
Sbjct: 215 SVREAFVQD------------IVDEVAEAISA-------------------AGIKAQIDG 243
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R+K +SI+ KM +D + ++YD A+R++V +I+ CY+ L I+H ++ P
Sbjct: 244 RVKHFFSIYRKMLNQDKSLDQIYDLFAVRIIVD---------SIKDCYAALGIIHEIYKP 294
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
I G F DYI PKP+ YQSLHT + G G+ E+QIRT MH AE+G+AAHW YKE N
Sbjct: 295 IPGRFKDYIAMPKPNMYQSLHTTLVGKTGTPFEIQIRTYDMHRTAEYGIAAHWKYKEASN 354
>gi|58337233|ref|YP_193818.1| ppGpp synthetase [Lactobacillus acidophilus NCFM]
gi|58254550|gb|AAV42787.1| ppGpp synthetase [Lactobacillus acidophilus NCFM]
Length = 746
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 133/442 (30%), Positives = 209/442 (47%), Gaps = 102/442 (23%)
Query: 99 FNDEQV---QKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
N++QV ++A FA +AH GQ R +G PY+ H LA L DT+ AG
Sbjct: 20 MNEDQVAFVERAYEFANKAHAGQKRASGQPYIIHPTQVAGTLANLGLDP-----DTIAAG 74
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
LHD V+D + ++E+FG++VA +V GV++L+ + N H+E
Sbjct: 75 FLHDTVEDTPVTNDELKEKFGEDVAFIVDGVTKLN----------KYEYN----SHQEFL 120
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRK 274
H I A+A++ +I LA RL + L+ L+P R+
Sbjct: 121 AENHRKMLI---------AMAKDLRVIMVKLADRLHNMHTLQH---------LRPDKQRR 162
Query: 275 MRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVV 333
+ ++ +++P +R+G I TI + +D SF H L+ + V
Sbjct: 163 IASETMDIYAPLADRLG----IGTI--------KWELEDMSF-----HYLNPEAYYRIVN 205
Query: 334 PFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIP 393
D+ R +R K++ D K+ + K + + GI
Sbjct: 206 LMDV--KRSQREKYISDTIKTLK-----KTLDELGI------------------------ 234
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
+ + R K +YSI+ KM K ++YD A+RV+V + ++ CY++L
Sbjct: 235 --KYDIYGRPKHIYSIYKKMVNKHKDFDEIYDLLAVRVIVKN---------VRDCYAVLG 283
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT++MHE AE+G+AAH
Sbjct: 284 AVHTEWKPMPGRFKDYIAMPKVNGYQSLHTTIIGPGGRPLEIQIRTEQMHEVAEYGVAAH 343
Query: 514 WLYKETG-NKLQSISSMDESDI 534
W YK N +++ SS ++ D+
Sbjct: 344 WAYKRGNFNGVEATSSGEKLDM 365
>gi|336054243|ref|YP_004562530.1| PpGpp synthetase [Lactobacillus kefiranofaciens ZW3]
gi|333957620|gb|AEG40428.1| PpGpp synthetase [Lactobacillus kefiranofaciens ZW3]
Length = 746
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 136/443 (30%), Positives = 207/443 (46%), Gaps = 104/443 (23%)
Query: 99 FNDEQV---QKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
ND+QV +KA FA +AH GQ R +G PY+ H LA L DTV AG
Sbjct: 20 MNDDQVAFVEKAYEFADKAHAGQKRASGQPYIIHPTQVAGTLATLGLDP-----DTVAAG 74
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
LHD V+D + ++E+FG++VA +V GV++L+ H+E
Sbjct: 75 FLHDTVEDTPVTNDELKEKFGEDVAFIVDGVTKLNKYE--------------YKSHQEFL 120
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRK 274
H I A+A++ +I LA RL + L+ L+P R+
Sbjct: 121 AENHRKMLI---------AMAKDLRVIMVKLADRLHNMHTLQH---------LRPDKQRR 162
Query: 275 MRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVV 333
+ ++ +++P +R+G I TI + +D SF H L+ + V
Sbjct: 163 IASETMDIYAPLADRLG----IGTI--------KWELEDMSF-----HYLNPEAYYRIVN 205
Query: 334 PFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIP 393
D+ R +R K++ D K+ + K + + GI
Sbjct: 206 LMDV--KRSQREKYIADTIKTLK-----KTLDELGI------------------------ 234
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
+ + R K +YSI+ KM K ++YD A+R +V + ++ CY++L
Sbjct: 235 --KYEIYGRPKHIYSIYKKMVNKHKDFDEIYDLLAVRAIVKN---------VRDCYAVLG 283
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT++MHE AE+G+AAH
Sbjct: 284 AVHTEWKPMPGRFKDYIAMPKVNGYQSLHTTIIGPGGRPLEIQIRTEQMHEVAEYGVAAH 343
Query: 514 WLYKETGN--KLQSISSMDESDI 534
W YK GN +Q+ SS ++ D+
Sbjct: 344 WAYKR-GNFSGVQTTSSGEKLDM 365
>gi|406920704|gb|EKD58719.1| hypothetical protein ACD_56C00061G0001 [uncultured bacterium]
Length = 498
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 131/421 (31%), Positives = 202/421 (47%), Gaps = 96/421 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA FA +AH GQ R++G+ Y+ H + +ILA I GK T+ A +LHDV +D
Sbjct: 25 IKKAYEFAFQAHVGQKRRSGEDYIQHPLAAAKILAE-IGMGGK----TIAACLLHDVPED 79
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
++ +E+ FG E+A +V GV++L I LR HEE L N+R
Sbjct: 80 TQVTMAEVEKTFGKEIAAMVDGVTKLGKIK--LRG-----------SHEEYF--LENLRK 124
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
++ A+A + +I LA RL ++ L + Q+ R R +
Sbjct: 125 MFI-------AMATDIRVIIIKLADRL------HNMQTLQHNPPEKQL-RIARETMEVFA 170
Query: 284 SPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFD-EHVLSMKDLLEAVVPFDILSDRR 342
NR+G + +T D SF D + ++K+L E D +
Sbjct: 171 PIANRLGMG------------EIKTQLQDLSFQYLDPTNYQAVKELEE--------KDYK 210
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEV-TLSS 401
+R +++ ++ E ++KE G++V +
Sbjct: 211 QRKQYVD----------------------QAIHELETDIKKE---------GIDVLEIHG 239
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R KS+YS++ K+++ D+ I++VYD A+R++V + + CY L +VH+ + P
Sbjct: 240 RAKSVYSLYLKLQKHDMDINRVYDLAAVRIIVNE---------VADCYETLGVVHKKYRP 290
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ G DYI PKP+GYQS+HT V GPDG LEVQIRT KMH AE G+AAHWLY E
Sbjct: 291 MIGRIKDYISLPKPNGYQSIHTTVFGPDGKILEVQIRTLKMHNEAEFGIAAHWLYSEGKK 350
Query: 522 K 522
K
Sbjct: 351 K 351
>gi|91774406|ref|YP_544162.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Methylobacillus flagellatus KT]
gi|91708393|gb|ABE48321.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Methylobacillus flagellatus KT]
Length = 740
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 129/461 (27%), Positives = 213/461 (46%), Gaps = 104/461 (22%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
+ + A F+ AH GQ R++G+PY+TH + ILA L T++A +LHDVV
Sbjct: 42 DHIWDAYRFSAAAHEGQVRRSGEPYVTHPVSVAGILAELHLDP-----PTLIAALLHDVV 96
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNM 221
+D + I + FG +VA+LV G+S+L +I T E N
Sbjct: 97 EDTGVTKQEISDRFGKQVAELVDGLSKLD----------KIEFQSATQAQAE------NF 140
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLAS 281
R + A++Q+ +I LA RL + V++P+ R++ +
Sbjct: 141 RKMLL-------AMSQDVRVILVKLADRLHNMS--------TLDVMKPEKQRRIARETLD 185
Query: 282 MWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSD 340
+++P NR+G + T+ +D SF +++ M+ V+ +++
Sbjct: 186 IYAPIANRLGLNEIYQTL------------EDLSF----KYLYPMR---HRVISKAVMAA 226
Query: 341 RRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLS 400
R R + + + L A + L+++ +E ++
Sbjct: 227 RGNRKEVVGKI----------------------LDAINQRLKEQ---------NIEAEVT 255
Query: 401 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 460
R K LYSI+ KM K + ++YD RV+V D + CY+ L ++H L+
Sbjct: 256 GREKHLYSIYKKMTGKTITFSQIYDIYGFRVIVRD---------LPTCYAALGVLHGLYK 306
Query: 461 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 520
PI G+F DYI PK +GYQSLHT + GP G+ +E+QIR+++MH A+ G+AAHWLYK T
Sbjct: 307 PIPGKFKDYIAIPKANGYQSLHTTLFGPFGTPIEIQIRSREMHNIADAGVAAHWLYKTTD 366
Query: 521 NKLQSISSMDES------DIEASSSLSKDTDDHNPLDTDLF 555
L ++ DI++ S+ S + +H DLF
Sbjct: 367 AHLTALQQQTHQWLQRLLDIQSESTDSLEFLEH--FKVDLF 405
>gi|403252468|ref|ZP_10918778.1| (p)ppGpp synthetase [Thermotoga sp. EMP]
gi|402812481|gb|EJX26960.1| (p)ppGpp synthetase [Thermotoga sp. EMP]
Length = 733
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 129/416 (31%), Positives = 199/416 (47%), Gaps = 94/416 (22%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
KA FA+ H GQ R +G+P++TH + +ILA L V T+VA +LHDVV+D
Sbjct: 55 KAYEFARIVHEGQKRFSGEPFITHPVEVTKILAGLGVD-----VTTLVAALLHDVVEDGE 109
Query: 166 E-SLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTI 224
SL I++EFG EVA++V GV+++S IN + R + D + TI
Sbjct: 110 NVSLDQIKKEFGPEVARIVDGVTKVSNINAPIGRDQ---------------DSRKKIETI 154
Query: 225 YALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRA-DLASMW 283
+ A+A++ +I+ LA RL + + + +Q Q ++ +A + ++
Sbjct: 155 QKM----FFAMAEDMRVIFVKLADRL------HNMRTIHY--VQDQEKKRYKAYETLEIY 202
Query: 284 SPRNRVGYSRRITTIVSSPPLDERTASDDESFTT-FDEHVLSMKDLLEAVVPFDILSDRR 342
+P + + I +I ++ +D +F + E +K+L+ + +R
Sbjct: 203 AP---LAHKLGIYSI--------KSELEDLAFKVLYPEEYYKIKELVA-----EKRKERE 246
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
KRT L KS+ + K K + + R
Sbjct: 247 KRTNEYISLLKSALEEHKIKAI----------------------------------VEGR 272
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K YSI+ KMR K ++YD ALRV+V D + CY++L IVH +W P+
Sbjct: 273 YKHYYSIWRKMREKGKKFEEIYDLIALRVIVKD---------VTTCYTVLGIVHNIWKPL 323
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
G F DYI PK +GY+SLHT V G LE+QIR ++MH AE+GL AHW+YKE
Sbjct: 324 PGRFKDYIAAPKSNGYRSLHTTVITGYGEPLEIQIRDEEMHREAEYGLIAHWIYKE 379
>gi|410724219|ref|ZP_11363418.1| (p)ppGpp synthetase, RelA/SpoT family [Clostridium sp. Maddingley
MBC34-26]
gi|410602505|gb|EKQ56985.1| (p)ppGpp synthetase, RelA/SpoT family [Clostridium sp. Maddingley
MBC34-26]
Length = 738
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 128/419 (30%), Positives = 200/419 (47%), Gaps = 99/419 (23%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA++AH Q R++G+PY+ H I ILA L + +T+VAG+LHDV++D
Sbjct: 21 VEKAYHFAEQAHKDQKRESGEPYIIHPIAVAEILAELGMDT-----NTIVAGLLHDVIED 75
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
S + F E+A LV GV++L+ + ++ + + E+ AD + M
Sbjct: 76 TDCSYDETVKLFNAEIANLVEGVTKLTKLGEMEYKTKE----------EQQADNVRKMLL 125
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRA-DLAS 281
A+A++ +I LA RL + LK P+ +K +A +
Sbjct: 126 ----------AMAKDIRVIIIKLADRLHNMRTLK----------FMPEKKQKNKAKETLD 165
Query: 282 MWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSD 340
+++P +R+G S+ + +D F E K+ E V D +++
Sbjct: 166 IYAPLAHRLGMSKI------------KWELEDLCFRYLHE-----KEYYELV---DSIAE 205
Query: 341 RR-KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTL 399
+R +R ++ D+ K E LE G+ +
Sbjct: 206 KRVERETYIKDIVKD----------------------LYEKLE---------TSGIHSDI 234
Query: 400 SSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLW 459
R K YSI+ KM K+ I +++D A+RV+V +++ CY +L IVH ++
Sbjct: 235 DGRPKHFYSIYKKMVSKNKSIEQIFDLTAIRVLV---------HSVKDCYGVLGIVHTIY 285
Query: 460 IPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAHW YKE
Sbjct: 286 RPIPGRFKDYIAMPKPNMYQSLHTTVIGPQGKTFEIQIRTFEMHKTAEYGIAAHWKYKE 344
>gi|329897893|ref|ZP_08272243.1| GTP pyrophosphokinase [gamma proteobacterium IMCC3088]
gi|328921019|gb|EGG28438.1| GTP pyrophosphokinase [gamma proteobacterium IMCC3088]
Length = 702
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 125/420 (29%), Positives = 196/420 (46%), Gaps = 102/420 (24%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILA--MLIPSSGKRAVDTVVAGILHD 159
+ V++A +A++AH GQ R++GDPY+TH + ILA + P S ++AG+LHD
Sbjct: 21 QNVKRAFFYAEQAHFGQTRRSGDPYVTHPLAVACILAEMHMDPQS-------IMAGLLHD 73
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYI--NQLLRRHRRINVNQGTLGHEELADR 217
V++D S ++ E+FGD VA+LV GVS+L+ I N L E+ A+
Sbjct: 74 VIEDTGISKTALAEQFGDTVAELVDGVSKLTQIEFNSLA---------------EKQAEN 118
Query: 218 LHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRA 277
M A A+A++ +I LA RL VL P R++
Sbjct: 119 FQKM----------ALAMARDIRVILVKLADRLHNMR--------TLGVLNPAKSRRIAK 160
Query: 278 DLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDI 337
+ +++P + + T+ R +D F H + + ++ A
Sbjct: 161 ETLEIYAP---IAMRLGMNTV--------RMEFEDLGFKAL--HPMRYERIMAA------ 201
Query: 338 LSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEV 397
R K +L ++ +Q E AL +E G
Sbjct: 202 ---RAKARGHRKELVENIRSQ------------------IEAALHRE---------GHSA 231
Query: 398 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 457
T++ R K LYSI+ KM+ K ++ D A R++V ++ CY +L VH
Sbjct: 232 TVTGREKHLYSIYQKMKEKRKSFAEIMDIYAFRIIVD---------SVDTCYRVLGCVHS 282
Query: 458 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 517
++ P+ GEF DYI PK +GYQSLHT ++G G +E+QIRT++M + A +G+AAHWLYK
Sbjct: 283 IYKPVPGEFTDYIAMPKANGYQSLHTVLRGMHGVPIEIQIRTREMEDMANNGIAAHWLYK 342
>gi|424779945|ref|ZP_18206831.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Catellicoccus
marimammalium M35/04/3]
gi|422843484|gb|EKU27921.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Catellicoccus
marimammalium M35/04/3]
Length = 724
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 134/447 (29%), Positives = 203/447 (45%), Gaps = 100/447 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
VQKA+ FA +AH Q RK+G+PY+ H I L + TV AG LHDVV+D
Sbjct: 28 VQKALDFATKAHAPQVRKSGEPYIIHPIQVANTLVEIHTDPC-----TVAAGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L I EEF D+VA +V GV++L I + H E+LA+ M
Sbjct: 83 TPVTLEEIAEEFNDDVAAIVDGVTKLGKIK--YKSHE-----------EQLAENHQKMLL 129
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
A+AQ+ +I LA RL + LK L+P R++ + +
Sbjct: 130 ----------AMAQDLRVILVKLADRLHNMRTLK---------YLRPDKQRRIAKETLEI 170
Query: 283 WSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
++P NR+G SR + +D S D
Sbjct: 171 YAPLANRLGMSRI------------KWELEDRSLRYLDP--------------------- 197
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
++ + +H +A+ E ++K S + E E E L + ++
Sbjct: 198 QQYYRIVHLMAEKREEREK----------YVSEMIREVKKEVEQL-------HIHADING 240
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI+ KM + ++YD A+R++V + I+ CY++L VH W P
Sbjct: 241 RPKHIYSIYRKMHDQKKSFEEIYDLTAIRIIVDN---------IKECYAILGAVHTRWTP 291
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE-TG 520
+ F DYI PK + YQSLHT V GP G +E+QIRT +MH+ AE G+AAHW YK+
Sbjct: 292 MPKRFKDYIAMPKANMYQSLHTTVIGPGGRPIEIQIRTHEMHKIAEFGVAAHWAYKQGKK 351
Query: 521 NKLQSISSMDESD-IEASSSLSKDTDD 546
+K++ ++ + D L KD++D
Sbjct: 352 DKVKGDNTDQQLDWFREIIELQKDSND 378
>gi|126695549|ref|YP_001090435.1| guanosine-3',5'-bis(diphosphate) 3'-diphosphatase, (ppGpp)ase
[Prochlorococcus marinus str. MIT 9301]
gi|126542592|gb|ABO16834.1| guanosine-3',5'-bis(diphosphate) 3'-diphosphatase, (ppGpp)ase
[Prochlorococcus marinus str. MIT 9301]
Length = 769
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 140/430 (32%), Positives = 195/430 (45%), Gaps = 99/430 (23%)
Query: 100 NDEQ---VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
NDE + KA A +AH GQFR +G+PY+ H + +L + SS + AG+
Sbjct: 56 NDENQNLIVKAFKLAYKAHDGQFRASGEPYIIHPVAVANLLKEIGASSS-----VIAAGL 110
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELAD 216
LHDVV+D L IE FG EV LV GV++L I+ N T E
Sbjct: 111 LHDVVEDTGIDLSEIETNFGLEVKILVEGVTKLG----------GIHFNNRTEAQAE--- 157
Query: 217 RLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 276
N+R ++ A+A + ++ LA RL L D + +I R+ R
Sbjct: 158 ---NLRKMFL-------AMASDIRVVLVKLADRLHNMRTIEWLNDEK----KLRIARETR 203
Query: 277 ADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFD-EHVLSMKDLLEAVVPF 335
A + NR+G +R + +D +F + + L +KD +
Sbjct: 204 EIYAPL---ANRLGINRF------------KWELEDLAFKFLEPKEYLDLKDQIAVK--- 245
Query: 336 DILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGM 395
SDR KR K +L K E LIS +
Sbjct: 246 --RSDREKRLKVTLNLMK------------------------------ENLISAG-LKNF 272
Query: 396 EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIV 455
E+T R K LY I+SKM R+ H++YD ALR++V + + CY L +V
Sbjct: 273 EIT--GRPKHLYGIWSKMERQQKHFHEIYDVAALRIIVDNSD---------SCYRALAVV 321
Query: 456 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 515
H + PI G F DYI PKP+GYQSLHT+V G +EVQIRT MH+ AE+G+AAHW
Sbjct: 322 HDTFKPIPGRFKDYIGLPKPNGYQSLHTSVIGRH-RPIEVQIRTTSMHQIAEYGIAAHWQ 380
Query: 516 YKETGNKLQS 525
YKE G+ +S
Sbjct: 381 YKEGGSPAKS 390
>gi|157412548|ref|YP_001483414.1| guanosine-3',5'-bis(diphosphate) 3'-diphosphatase, (ppGpp)ase
[Prochlorococcus marinus str. MIT 9215]
gi|157387123|gb|ABV49828.1| guanosine-3',5'-bis(diphosphate) 3'-diphosphatase, (ppGpp)ase
[Prochlorococcus marinus str. MIT 9215]
Length = 769
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 140/430 (32%), Positives = 195/430 (45%), Gaps = 99/430 (23%)
Query: 100 NDEQ---VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
NDE + KA A +AH GQFR +G+PY+ H + +L + SS + AG+
Sbjct: 56 NDENQNLIAKAFKLAYKAHDGQFRASGEPYIIHPVAVANLLKEIGASSS-----VIAAGL 110
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELAD 216
LHDVV+D L IE FG EV LV GV++L I+ N T E
Sbjct: 111 LHDVVEDTGIDLYEIETNFGLEVKILVEGVTKLG----------GIHFNNRTEAQAE--- 157
Query: 217 RLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 276
N+R ++ A+A + ++ LA RL L D + +I R+ R
Sbjct: 158 ---NLRKMFL-------AMASDIRVVLVKLADRLHNMRTIEWLND----EKKLRIARETR 203
Query: 277 ADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFD-EHVLSMKDLLEAVVPF 335
A + NR+G +R + +D +F + + L +KD +
Sbjct: 204 EIYAPL---ANRLGINRF------------KWELEDLAFKFLEPKEYLDLKDQIAVK--- 245
Query: 336 DILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGM 395
SDR KR K +L K E LIS +
Sbjct: 246 --RSDREKRLKLTLNLMK------------------------------ENLISAG-LKNF 272
Query: 396 EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIV 455
E+T R K LY I+SKM R+ H++YD ALR++V + + CY L +V
Sbjct: 273 EIT--GRPKHLYGIWSKMERQQKHFHEIYDVAALRIIVDNSD---------SCYRALAVV 321
Query: 456 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 515
H + PI G F DYI PKP+GYQSLHT+V G +EVQIRT MH+ AE+G+AAHW
Sbjct: 322 HDTFKPIPGRFKDYIGLPKPNGYQSLHTSVIGRH-RPIEVQIRTTSMHQIAEYGIAAHWQ 380
Query: 516 YKETGNKLQS 525
YKE G+ +S
Sbjct: 381 YKEGGSPAKS 390
>gi|428313851|ref|YP_007124828.1| RelA/SpoT family (p)ppGpp synthetase [Microcoleus sp. PCC 7113]
gi|428255463|gb|AFZ21422.1| (p)ppGpp synthetase, RelA/SpoT family [Microcoleus sp. PCC 7113]
Length = 751
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 136/432 (31%), Positives = 199/432 (46%), Gaps = 100/432 (23%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ +A FA + H GQ R +G+PY+ H + +L L SS + AG LHDVV+D
Sbjct: 40 ISRAFEFAYKLHEGQLRASGEPYIAHPVAVAGLLRDLGGSSV-----MIAAGFLHDVVED 94
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+ IE FG EV +LV GV++LS + N + T E N R
Sbjct: 95 TDVTPEEIESRFGVEVRRLVEGVTKLS----------KFNFSSKTERQAE------NFRR 138
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
++ A+A + +I LA RL + L+ L PQ R + + +
Sbjct: 139 MFL-------AMAADIRVIVVKLADRLHNMRTLEH---------LNPQKQRSISQETREI 182
Query: 283 WSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFD-EHVLSMKDLLEAVVPFDILSD 340
++P NR+G R + +D +F + E M+ L+ + +D
Sbjct: 183 FAPLANRLGIGR------------VKWELEDLAFKYLEPESYRQMQQLVA-----ERRTD 225
Query: 341 RRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLS 400
R R + D+ + E LE ++ I +E+ S
Sbjct: 226 RETRLSKVGDILR-------------------------ERLE------STEIHCLEI--S 252
Query: 401 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 460
R K LY I+ KM+R+ G H++YD A+R+++ K + CY L IVH +
Sbjct: 253 GRPKHLYGIYQKMQRQQKGFHEIYDLAAMRLILQTK---------EDCYRALAIVHDAFR 303
Query: 461 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 520
PI G F DYI PKP+ YQSLHT V GP G +EVQIRT +MH AE+G+AAHW YKE+G
Sbjct: 304 PIPGRFKDYIGLPKPNRYQSLHTGVMGPSGRPIEVQIRTLEMHHIAEYGIAAHWKYKESG 363
Query: 521 NKLQS-ISSMDE 531
+ IS+ DE
Sbjct: 364 GSSNNRISAEDE 375
>gi|33239669|ref|NP_874611.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
gi|33237194|gb|AAP99263.1| GTP pyrophosphokinase [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
Length = 776
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 132/427 (30%), Positives = 193/427 (45%), Gaps = 98/427 (22%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P +D + A A R H GQFR +GDPY++H I +L + S + AG
Sbjct: 62 PADSDTLLASAFDLAFRLHKGQFRVSGDPYISHPIAVADLLRDIGASP-----TVIAAGF 116
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELAD 216
LHDVV+D +L +E FG EV LV GV++L I+ R +
Sbjct: 117 LHDVVEDTSITLPELEAYFGSEVRGLVEGVTKLGGIHFTNRTEAQA-------------- 162
Query: 217 RLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 276
N+R ++ A+A++ ++ LA RL VLQP +++
Sbjct: 163 --ENLRKMFL-------AMARDIRVVLVKLADRLHNMR--------TIEVLQPAKQQRIA 205
Query: 277 ADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPF 335
+ +++P NR+G R + +D +F + S K + + V
Sbjct: 206 LETREIYAPLANRLGIGRF------------KWELEDLAFKLLEPE--SYKKIQQEVA-- 249
Query: 336 DILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGM 395
+ R +R K LH L ELL + G+
Sbjct: 250 ---TKRSEREKRLH-------------------------------LTIELLKNRLINAGL 275
Query: 396 -EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+ + R K L+ I+SKM ++D H++YD ALR++V P ++ CY L +
Sbjct: 276 NDCNIDGRPKHLFGIWSKMEKQDKEFHEIYDVAALRIIV---------PNLETCYRALAV 326
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH + PI G F DYI PKP+GYQSLHTAV G +EVQIRTQ+MH+ AE G+AAHW
Sbjct: 327 VHDTFRPIPGRFKDYIGLPKPNGYQSLHTAVIGRH-RPIEVQIRTQEMHQVAEFGIAAHW 385
Query: 515 LYKETGN 521
YKE G+
Sbjct: 386 KYKEGGS 392
>gi|387128852|ref|YP_006297457.1| GTP pyrophosphokinase , (p)ppGpp synthetase II /
Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Methylophaga sp. JAM1]
gi|386275914|gb|AFI85812.1| GTP pyrophosphokinase , (p)ppGpp synthetase II /
Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Methylophaga sp. JAM1]
Length = 719
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 133/468 (28%), Positives = 215/468 (45%), Gaps = 104/468 (22%)
Query: 62 IASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFND--EQVQKAIAFAKRAHHGQF 119
+++ +++++DF+ E +P I D T + N+ E +++A FA++ H GQ
Sbjct: 1 MSAKPSVASELDFIQ---ESEPKLTIDDLCFATSNYLENNQVESIRRAYHFAEQCHEGQT 57
Query: 120 RKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEV 179
R++G+ Y+TH + +LAM+ + ++AG+LHDV++D S + EFG+ V
Sbjct: 58 RRSGERYITHPLAVAHVLAMM-----HMDYECIMAGLLHDVIEDTEMSKRDVIAEFGEPV 112
Query: 180 AKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQET 239
A+LV GV++L+ R+H + A+ L M A++++
Sbjct: 113 AELVEGVTKLAQAAFETRQHAQ-------------AENLRKMLL----------AMSRDI 149
Query: 240 LLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP-RNRVGYSRRITTI 298
+I LA RL L+P+ R++ + +++P R+G +
Sbjct: 150 RVIIVKLADRLHNMR--------TLGHLRPEKRRRIAHETLEIYAPIAQRLGMNLM---- 197
Query: 299 VSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQ 358
R +D F HVL P R + L D + +
Sbjct: 198 --------RCELEDLGF-----HVL---------YPI--------RYRVLGDAVRKARGN 227
Query: 359 KKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDV 418
+K V Q L + E+E G+ + R K+LYSI+ KM K +
Sbjct: 228 RKEIVSQITASILNRM-------EQE---------GLSADIQGREKNLYSIYKKMVSKQL 271
Query: 419 GIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGY 478
+V D A R++V D + CY +L +VH L+ P+ G+F DYI PK +GY
Sbjct: 272 SFSEVMDVYAFRIIVDD---------VDACYRMLGVVHNLYKPVQGKFKDYIAIPKANGY 322
Query: 479 QSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE---TGNKL 523
QSLHT + GP G +EVQIR++ M + AE G+AAHWLYK GN L
Sbjct: 323 QSLHTVLFGPYGVPIEVQIRSRDMDQLAEAGVAAHWLYKTGEVAGNTL 370
>gi|119509915|ref|ZP_01629057.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA [Nodularia
spumigena CCY9414]
gi|119465381|gb|EAW46276.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA [Nodularia
spumigena CCY9414]
Length = 756
Score = 162 bits (411), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 137/431 (31%), Positives = 196/431 (45%), Gaps = 99/431 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ KA FA + H GQ+RK+G+ Y++H + +L L G A+ + AG LHDVV+D
Sbjct: 44 IGKAFEFAYQLHEGQYRKSGELYISHPVAVAGLLRDL---GGSPAM--IAAGFLHDVVED 98
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+ IEE FG EV +LV GV++LS +IN T E N R
Sbjct: 99 TDVTSEQIEEHFGPEVRQLVEGVTKLS----------KINFTSKTESQAE------NFRR 142
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALK--AELEDLCFAVLQPQIFRKMRADLA 280
++ A+AQ+ +I LA RL + L+ +E A IF + A+
Sbjct: 143 MFL-------AMAQDIRVIVVKLADRLHNMRTLQYMSESSRRRSAQETRDIFAPL-ANRL 194
Query: 281 SMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSD 340
MW R+ + + P E+F +HV
Sbjct: 195 GMW----RIKWELEDLSFKYLEP---------EAFRQIQDHV------------------ 223
Query: 341 RRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLS 400
KR LAK+++ ++ +Q AGI C++ +S
Sbjct: 224 SEKRAAREEKLAKTTDMLRER--LQQAGIH------CQD-------------------IS 256
Query: 401 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 460
R K LYSI+ KM+R+ H++YD ALR++V + CY L +VH +
Sbjct: 257 GRPKHLYSIYQKMQRQQKEFHEIYDLAALRIIVQTN---------EECYRALAVVHDAFR 307
Query: 461 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 520
PI F DYI PKP+ YQSLHT V G G LE+QIRT +MH AE+G+AAHW YKETG
Sbjct: 308 PIPSRFKDYIGLPKPNRYQSLHTGVIGLSGRPLEIQIRTVEMHHVAEYGIAAHWKYKETG 367
Query: 521 NKLQSISSMDE 531
+++ DE
Sbjct: 368 GSTSQLTNADE 378
>gi|443325885|ref|ZP_21054559.1| (p)ppGpp synthetase, RelA/SpoT family [Xenococcus sp. PCC 7305]
gi|442794512|gb|ELS03925.1| (p)ppGpp synthetase, RelA/SpoT family [Xenococcus sp. PCC 7305]
Length = 750
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 133/429 (31%), Positives = 199/429 (46%), Gaps = 99/429 (23%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A FA H GQ+RK+G+PY+ H + +A L+ G V T+ AG LHD+V+D
Sbjct: 41 RAFNFAYNLHEGQYRKSGEPYIAHPV----AVAGLLRDLGGDCV-TIAAGFLHDIVEDTD 95
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTIY 225
+ IEE FG EV LV GV++LS N + R+ N R ++
Sbjct: 96 ITPEQIEEMFGFEVRCLVEGVTKLSKFNFSSTKERQA----------------ENFRRMF 139
Query: 226 ALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASMWS 284
A+AQ+ +I LA RL + L+ L+P+ R++ + +++
Sbjct: 140 L-------AMAQDIRVIVVKLADRLHNMRTLEH---------LKPEKQRRIALETREIFA 183
Query: 285 P-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFD-EHVLSMKDLLEAVVPFDILSDRR 342
P NR+G R + +D F + E ++ L+ + SDR
Sbjct: 184 PLANRLGIGRF------------KWELEDLCFKYLEPEAYREIQSLIS-----ERRSDRE 226
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
R + + D +S +++ GI + + L R
Sbjct: 227 ARIEKVLDTLRSQ--------MENLGIKI-------------------------LELKGR 253
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K LY I+ KM+R+ ++YD A+R++V A + CY L +VH + PI
Sbjct: 254 PKHLYGIYQKMQRQQKKFEEIYDIAAIRIIV---------EANEQCYRSLAVVHDAFKPI 304
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
G F DYI PKP+ YQSLHT V G +G LEVQIRT +MH AE+G+AAHW YKETG+
Sbjct: 305 PGRFKDYIGLPKPNRYQSLHTTVVGSNGRPLEVQIRTLEMHHIAEYGIAAHWKYKETGSS 364
Query: 523 LQSISSMDE 531
++S DE
Sbjct: 365 EAPVNSDDE 373
>gi|123967746|ref|YP_001008604.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Prochlorococcus marinus str. AS9601]
gi|123197856|gb|ABM69497.1| guanosine-3',5'-bis(diphosphate) 3'-diphosphatase, (ppGpp)ase
[Prochlorococcus marinus str. AS9601]
Length = 769
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 138/427 (32%), Positives = 193/427 (45%), Gaps = 96/427 (22%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
N + KA A +AH GQFR +G+PY+ H + +L + SS + AG+LHD
Sbjct: 59 NQNLIVKAFKLAYKAHDGQFRASGEPYIIHPVAVANLLKEIGASSS-----VIAAGLLHD 113
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLH 219
VV+D L IE FG EV LV GV++L I+ N T E
Sbjct: 114 VVEDTGIDLSEIETNFGLEVKILVEGVTKLG----------GIHFNNRTEAQAE------ 157
Query: 220 NMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 279
N+R ++ A+A + ++ LA RL L D + +I R+ R
Sbjct: 158 NLRKMFL-------AMASDFRVVLVKLADRLHNMRTIEWLNDEK----KLRIARETREIY 206
Query: 280 ASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFD-EHVLSMKDLLEAVVPFDIL 338
A + NR+G +R + +D +F + + L +KD +
Sbjct: 207 APL---ANRLGINRF------------KWELEDLAFKFLEPKEYLDLKDQIAVK-----R 246
Query: 339 SDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVT 398
SDR KR K +L K E LIS + E+T
Sbjct: 247 SDREKRLKVTLNLMK------------------------------ENLISAG-LKNFEIT 275
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
R K LY I+SKM R+ H++YD ALR++V + + CY L +VH
Sbjct: 276 --GRPKHLYGIWSKMERQQKHFHEIYDVAALRIIVDNSD---------SCYRALAVVHDT 324
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
+ PI G F DYI PKP+GYQSLHT+V G +EVQIRT MH+ AE+G+AAHW YKE
Sbjct: 325 FKPIPGRFKDYIGLPKPNGYQSLHTSVIGRH-RPIEVQIRTTSMHQIAEYGIAAHWQYKE 383
Query: 519 TGNKLQS 525
G+ +S
Sbjct: 384 GGSPAKS 390
>gi|427704011|ref|YP_007047233.1| RelA/SpoT family (p)ppGpp synthetase [Cyanobium gracile PCC 6307]
gi|427347179|gb|AFY29892.1| (p)ppGpp synthetase, RelA/SpoT family [Cyanobium gracile PCC 6307]
Length = 773
Score = 162 bits (410), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 136/435 (31%), Positives = 201/435 (46%), Gaps = 104/435 (23%)
Query: 92 DVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
D P+ + V A FA + H GQFR +G+PY+ H I +L + S+
Sbjct: 55 DAEARPVDPEALVATAFDFAYQLHDGQFRASGEPYIVHPIAVAGLLRDIGASAA-----V 109
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
+ AG LHDVV+D + IE FG+EV LV GV++L I+ R T
Sbjct: 110 IAAGFLHDVVEDTQVTPDEIEARFGEEVRALVEGVTKLGGIHFTNR----------TEAQ 159
Query: 212 EELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL----GLWALKAELEDLCFAVL 267
E N+R ++ A+A + ++ LA RL L ALK E
Sbjct: 160 AE------NLRRMFL-------AMASDIRVVLVKLADRLHNMRTLGALKPEK-------- 198
Query: 268 QPQIFRKMRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMK 326
Q +I R+ R +++P NR+G R + +D +F + S +
Sbjct: 199 QQRIARETR----DIYAPLANRLGIGRFKWEL------------EDLAFKVLEPE--SYR 240
Query: 327 DLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELL 386
D+ + V TK +S ++ VQ L ++ L
Sbjct: 241 DVQQQVA-----------TK------RSEREERLGATVQ---------------LLRDRL 268
Query: 387 ISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQ 446
++ + +S R K LY I+SKM+R+ H++YD ALR++ P+++
Sbjct: 269 VAAGL---QDCEVSGRPKHLYGIWSKMQRQQKAFHEIYDVAALRILC---------PSVE 316
Query: 447 CCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYA 506
CY L +VH ++ PI G F DYI PKP+GYQSLHTAV G +EVQIRT +MH+ A
Sbjct: 317 SCYRALAVVHDIFRPIPGRFKDYIGLPKPNGYQSLHTAVIG-RHRPIEVQIRTTEMHQVA 375
Query: 507 EHGLAAHWLYKETGN 521
E+G+AAHW YKE G+
Sbjct: 376 EYGIAAHWKYKEGGS 390
>gi|226227361|ref|YP_002761467.1| GTP pyrophosphokinase [Gemmatimonas aurantiaca T-27]
gi|226090552|dbj|BAH38997.1| GTP pyrophosphokinase [Gemmatimonas aurantiaca T-27]
Length = 717
Score = 162 bits (410), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 122/426 (28%), Positives = 196/426 (46%), Gaps = 95/426 (22%)
Query: 95 GYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVA 154
Y + + + +A ++ AH GQ R +G+PY++HCI RILA L + TV +
Sbjct: 12 AYDRLDHDLLVRAYKYSDAAHAGQVRHSGEPYVSHCIEVARILADLQLDTA-----TVTS 66
Query: 155 GILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEL 214
G+LHD+V+D ++ IE EFG E+A++V G+++++ + R R+
Sbjct: 67 GLLHDIVEDTDITVEDIEREFGSEIAQIVDGLTKIANLPMSSREERQ------------- 113
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
+ N R + ++A++ +I LA RL + L + L P+ R+
Sbjct: 114 ---VENYRKLLL-------SIAKDARVILIKLADRL------HNMRTLDW--LAPEKRRR 155
Query: 275 MRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVV 333
+ + +++P +R G ++ R +D +F +
Sbjct: 156 IAQETRDLYAPLAHRFGMAK------------VRWELEDLAFKHLEPDAY---------- 193
Query: 334 PFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIP 393
K L L + +++A + Q E LEK L + + I
Sbjct: 194 ------------KTLARLVAAKRGEREALIAQ-----------MREPLEKRL--TDAGIA 228
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
+EVT R K L+SI+ KM+++D +YD A+RV+V P + CY L
Sbjct: 229 DVEVT--GRPKHLWSIYKKMQQRDRPYEDIYDLLAIRVIV---------PNVLECYHALG 277
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
++H W P+ DYI PK +GYQSLHT V GP E+QIRT+ MH A+ G+AAH
Sbjct: 278 VIHDGWTPVQERIKDYIAQPKSNGYQSLHTTVFGPGRQLFEIQIRTRDMHRTADFGIAAH 337
Query: 514 WLYKET 519
WLYKE
Sbjct: 338 WLYKEN 343
>gi|227903817|ref|ZP_04021622.1| GTP diphosphokinase [Lactobacillus acidophilus ATCC 4796]
gi|227868704|gb|EEJ76125.1| GTP diphosphokinase [Lactobacillus acidophilus ATCC 4796]
Length = 749
Score = 162 bits (410), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 132/442 (29%), Positives = 209/442 (47%), Gaps = 102/442 (23%)
Query: 99 FNDEQV---QKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
N++QV ++A FA +AH GQ R +G PY+ H LA L DT+ AG
Sbjct: 23 MNEDQVAFVERAYEFANKAHAGQKRASGQPYIIHPTQVAGTLANLGLDP-----DTIAAG 77
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
LHD V+D + ++E+FG++V+ +V GV++L+ + N H+E
Sbjct: 78 FLHDTVEDTPVTNDELKEKFGEDVSFIVDGVTKLN----------KYEYN----SHQEFL 123
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRK 274
H I A+A++ +I LA RL + L+ L+P R+
Sbjct: 124 AENHRKMLI---------AMAKDLRVIMVKLADRLHNMHTLQH---------LRPDKQRR 165
Query: 275 MRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVV 333
+ ++ +++P +R+G I TI + +D SF H L+ + V
Sbjct: 166 IASETMDIYAPLADRLG----IGTI--------KWELEDMSF-----HYLNPEAYYRIVN 208
Query: 334 PFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIP 393
D+ R +R K++ D K+ + K + + GI
Sbjct: 209 LMDV--KRSQREKYISDTIKTLK-----KTLDELGI------------------------ 237
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
+ + R K +YSI+ KM K ++YD A+RV+V + ++ CY++L
Sbjct: 238 --KYDIYGRPKHIYSIYKKMVNKHKDFDEIYDLLAVRVIVKN---------VRDCYAVLG 286
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT++MHE AE+G+AAH
Sbjct: 287 AVHTEWKPMPGRFKDYIAMPKVNGYQSLHTTIIGPGGRPLEIQIRTEQMHEVAEYGVAAH 346
Query: 514 WLYKETG-NKLQSISSMDESDI 534
W YK N +++ SS ++ D+
Sbjct: 347 WAYKRGNFNGVEATSSGEKLDM 368
>gi|161507422|ref|YP_001577376.1| ppGpp synthetase [Lactobacillus helveticus DPC 4571]
gi|160348411|gb|ABX27085.1| ppGpp synthetase [Lactobacillus helveticus DPC 4571]
Length = 746
Score = 162 bits (409), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 131/424 (30%), Positives = 196/424 (46%), Gaps = 101/424 (23%)
Query: 99 FNDEQV---QKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
ND+QV +KA FA +AH GQ R +G PY+ H LA L DT+VAG
Sbjct: 20 MNDDQVAFVEKAYEFANKAHAGQKRASGQPYIIHPTQVAGTLATLGLDP-----DTIVAG 74
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
LHD V+D + ++E+FG+ VA +V GV++L+ H+E
Sbjct: 75 FLHDTVEDTPVTNDELKEKFGEGVAFIVDGVTKLNKYE--------------YKSHQEFL 120
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRK 274
H I A+A++ +I LA RL + L+ L+P R
Sbjct: 121 AENHRKMLI---------AMAKDLRVIMVKLADRLHNMHTLQH---------LRPDKQRW 162
Query: 275 MRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVV 333
+ ++ +++P +R+G I TI + +D SF H L+ + V
Sbjct: 163 IASETMDIYAPLADRLG----IGTI--------KWELEDMSF-----HYLNPEAYYRIVN 205
Query: 334 PFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIP 393
D+ R +R K++ D K+ + K + + GI
Sbjct: 206 LMDV--KRSQREKYIADTIKTLK-----KTLDELGI------------------------ 234
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
+ + R K +YSI+ KM K ++YD A+RV+V + ++ CY++L
Sbjct: 235 --KYEIYGRPKHIYSIYKKMVNKHKDFDEIYDLLAVRVIVKN---------VRDCYAVLG 283
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT++MHE AE+G+AAH
Sbjct: 284 AVHTEWKPMPGRFKDYIAMPKVNGYQSLHTTIIGPGGRPLEIQIRTEQMHEVAEYGVAAH 343
Query: 514 WLYK 517
W YK
Sbjct: 344 WAYK 347
>gi|260101667|ref|ZP_05751904.1| GTP diphosphokinase [Lactobacillus helveticus DSM 20075]
gi|260084527|gb|EEW68647.1| GTP diphosphokinase [Lactobacillus helveticus DSM 20075]
Length = 746
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 130/424 (30%), Positives = 196/424 (46%), Gaps = 101/424 (23%)
Query: 99 FNDEQV---QKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
ND+QV +KA FA +AH GQ R +G PY+ H LA L DT+VAG
Sbjct: 20 MNDDQVAFVEKAYEFANKAHAGQKRASGQPYIIHPTQVAGTLATLGLDP-----DTIVAG 74
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
LHD V+D + ++E+FG++V +V GV++L+ H+E
Sbjct: 75 FLHDTVEDTPVTNDELKEKFGEDVTFIVDGVTKLNKYE--------------YKSHQEFL 120
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRK 274
H I A+A++ +I LA RL + L+ L+P R
Sbjct: 121 AENHRKMLI---------AMAKDLRVIMVKLADRLHNMHTLQH---------LRPDKQRW 162
Query: 275 MRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVV 333
+ ++ +++P +R+G I TI + +D SF H L+ + V
Sbjct: 163 ISSETMDIYAPLADRLG----IGTI--------KWELEDMSF-----HYLNPEAYYRIVN 205
Query: 334 PFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIP 393
D+ R +R K++ D K+ + K + + GI
Sbjct: 206 LMDV--KRSQREKYIADTIKTLK-----KTLDELGI------------------------ 234
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
+ + R K +YSI+ KM K ++YD A+RV+V + ++ CY++L
Sbjct: 235 --KYEIYGRPKHIYSIYKKMVNKHKDFDEIYDLLAVRVIVKN---------VRDCYAVLG 283
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT++MHE AE+G+AAH
Sbjct: 284 AVHTEWKPMPGRFKDYIAMPKVNGYQSLHTTIIGPGGRPLEIQIRTEQMHEVAEYGVAAH 343
Query: 514 WLYK 517
W YK
Sbjct: 344 WAYK 347
>gi|429221371|ref|YP_007183015.1| RelA/SpoT family (p)ppGpp synthetase [Deinococcus peraridilitoris
DSM 19664]
gi|429132234|gb|AFZ69249.1| (p)ppGpp synthetase, RelA/SpoT family [Deinococcus peraridilitoris
DSM 19664]
Length = 746
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 211/442 (47%), Gaps = 107/442 (24%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
+ ++V +A FA+RAH G RK+G+PY+TH + +ILA L + D V+AG+LHD
Sbjct: 11 DQDRVARAYHFAERAHDGVLRKSGEPYITHPVTVAQILADLGMDT-----DGVIAGLLHD 65
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLH 219
V+D + +E++FG V ++V G +++S + +++ N H+E ++ L
Sbjct: 66 TVEDTDVTFEQVEQDFGVVVRRIVEGETKVSKLT-------KMSSNL----HDEQSENLR 114
Query: 220 NMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 279
M A+ + +I LA RL MR L
Sbjct: 115 QMLI----------AMTGDIRVIIVKLADRL----------------------HNMRT-L 141
Query: 280 ASMWSPRNRVGYSRRITTIVSSPPLDERTAS-------DDESFTTFDEHVLSMKDLLEAV 332
ASM + + + +R I + PL R +D SF D D E++
Sbjct: 142 ASMPAHKQQ-RIARETLEIFA--PLAHRLGIGQIKWELEDLSFKYLD------PDAYESL 192
Query: 333 VPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVAC-EEALEKELLISTSY 391
+RR RT+ +++++ +V AL L A EE +E ++++
Sbjct: 193 -------ERRLRTR---------QSERERHIVG----ALEQLRATLEEDVELPEWVASTD 232
Query: 392 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPA------- 444
I G R K LYSI +KMR++ + +++D A+RV++ K + P
Sbjct: 233 ITG-------RGKHLYSIHNKMRKEGKSLEQIFDLLAVRVILRPK--PVEAPPGKAKERA 283
Query: 445 -----IQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRT 499
+ CY L +VH +W PI G F DYI PKP+GYQSLHT V G +EVQIR+
Sbjct: 284 EDAREKRVCYHALGLVHSMWTPIPGRFKDYIAVPKPNGYQSLHTTVISTAGQPIEVQIRS 343
Query: 500 QKMHEYAEHGLAAHWLYKETGN 521
Q+MHE AE G+AAHW+YK+ G
Sbjct: 344 QRMHEVAEFGIAAHWMYKQGGK 365
>gi|153854672|ref|ZP_01995922.1| hypothetical protein DORLON_01920 [Dorea longicatena DSM 13814]
gi|149752776|gb|EDM62707.1| RelA/SpoT family protein [Dorea longicatena DSM 13814]
Length = 781
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 118/442 (26%), Positives = 208/442 (47%), Gaps = 99/442 (22%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + ++KA A +AH Q RK+G+PY+ H + ILA L + +T+ AG
Sbjct: 59 HPSTDVSMIEKAYKLAVKAHGDQRRKSGEPYIIHPLWVAIILADL-----EMDKETIAAG 113
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
+LHDVV+D + I EFGDEVA LV GV++L + + ++L
Sbjct: 114 MLHDVVEDTKFTEEDIRREFGDEVALLVDGVTKLGRL---------------SYSSDKLE 158
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
+ N+R ++ A+A++ +I LA RL + L F + P ++
Sbjct: 159 VQAENLRKMFL-------AMAKDIRVIIIKLADRL------HNMRTLQF--MTPAKQKEK 203
Query: 276 RADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVP 334
+ +++P R+G S+ T +
Sbjct: 204 AKETMDIYAPIAQRLGISKIKTEL------------------------------------ 227
Query: 335 FDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPG 394
D L+ + + + +DL A+K + EE +E+ + ++++
Sbjct: 228 -DDLALKYSQPEVFYDLVNQINARKTER---------------EEFVEQIVEEVSTHMKN 271
Query: 395 MEVT--LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLL 452
+ ++ R+K +SI+ KM +D + ++YD A+R++V +++ CY+ L
Sbjct: 272 ANIKAEVNGRVKHFFSIYKKMVNQDKTVDQIYDLFAVRIIV---------ESVKDCYAAL 322
Query: 453 DIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAA 512
++H ++ PI G F DYI PKP+ YQSLHT + G E+QIRT++MH+ AE+G+AA
Sbjct: 323 GVIHEMYTPIPGRFKDYIAMPKPNMYQSLHTTLMSSVGQPFEIQIRTEEMHKTAEYGIAA 382
Query: 513 HWLYKETGNKLQSISSMDESDI 534
HW YKE+ + +S+ + +E +
Sbjct: 383 HWKYKESNDGKKSVEAQEEEKL 404
>gi|284048851|ref|YP_003399190.1| (p)ppGpp synthetase I SpoT/RelA [Acidaminococcus fermentans DSM
20731]
gi|283953072|gb|ADB47875.1| (p)ppGpp synthetase I, SpoT/RelA [Acidaminococcus fermentans DSM
20731]
Length = 740
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 132/425 (31%), Positives = 198/425 (46%), Gaps = 106/425 (24%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E V++A FA AH Q R +G+PY+ H + ILA L +D T+ A LHD
Sbjct: 28 EFVREAYNFAAEAHAKQKRASGEPYIIHPLGVASILAQL-------QMDDVTLAAAFLHD 80
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLH 219
VV+D +L +E+ FG EVA LV GV++L I + R +++
Sbjct: 81 VVEDTEVTLDQMEDIFGREVAMLVDGVTKLGKIEYISREEQQV----------------E 124
Query: 220 NMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 279
N R ++ A+A++ ++ LA RL R M+
Sbjct: 125 NYRKMFL-------AMAKDIRVVLIKLADRL-------------------HNMRTMK--- 155
Query: 280 ASMWSPRNRVGYSRRIT--TIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDI 337
+ P N+ +RI+ T+ PL R + ++K LE
Sbjct: 156 ---FMPVNK---QKRISSETLEIYAPLAHRLG------------IYAIKWELED------ 191
Query: 338 LSDRRKRTKFLHDLAKSSEAQKKAK--VVQDAGIALTSLVACEEALEKELLISTSYIPGM 395
L+ R + ++L + + ++ + +VQ+A L L CEE+ G+
Sbjct: 192 LAFRYMEPQHYYELVEQVKVKRHEREAMVQEAMDELRKL--CEES-------------GI 236
Query: 396 EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIV 455
+ R KS YSI+ KM+R I+++YD A+RV+V ++ CY +L IV
Sbjct: 237 NCQIQGRPKSFYSIYKKMQRDHKTINEIYDLLAVRVLVD---------TVKDCYGVLGIV 287
Query: 456 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 515
H W PI G F DYI PK +GYQSLHT V G LE+QIRT +MH+ +E+G+AAHW
Sbjct: 288 HGKWKPIPGRFKDYIAVPKSNGYQSLHTTVVSSSGQPLEIQIRTFEMHKVSEYGVAAHWR 347
Query: 516 YKETG 520
YKE+G
Sbjct: 348 YKESG 352
Score = 44.7 bits (104), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 19/121 (15%)
Query: 700 RRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSV---VP 756
+ S S P+S + +++ K+ LR +L W + +R D+V V
Sbjct: 349 KESGGSKMPSSSDKNVDAKMAWLRQLLEWHKDMRDPHEF------------VDTVKMDVF 396
Query: 757 GEVVIVCWPNGEIMRLRSGSTAADAAMKV--GLEGKLV--LVNGQLVLPNTELKDGDIVE 812
+ V V P G+++ L GS D A +V G+ V VNG++V + LK+GDIVE
Sbjct: 397 SDEVFVFTPQGDVLDLPEGSVPIDFAYRVHTGVGNSCVGAKVNGKIVPLDYHLKNGDIVE 456
Query: 813 V 813
+
Sbjct: 457 I 457
>gi|302342677|ref|YP_003807206.1| (p)ppGpp synthetase I SpoT/RelA [Desulfarculus baarsii DSM 2075]
gi|301639290|gb|ADK84612.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfarculus baarsii DSM 2075]
Length = 726
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 125/428 (29%), Positives = 203/428 (47%), Gaps = 92/428 (21%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
V GY P + + + KA ++ + H GQ R +G+PYL+H + +L S + V +
Sbjct: 11 VLGYHPGADVKAIMKAYVYSAKVHAGQRRSSGEPYLSHPLAVAALL-----SEMQLDVAS 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
+ AG+LHD V+D +L I G EVA LV GV++++ + + + Q
Sbjct: 66 ICAGLLHDTVEDTEATLADITALLGAEVASLVDGVTKITLLAAPAQAQPDASAMQA---- 121
Query: 212 EELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
N+R + A+A + ++ LA RL + L + L+P+
Sbjct: 122 -------QNLRKMIL-------AMANDIRVLLIKLADRL------HNMRTLGY--LKPEK 159
Query: 272 FRKMRADLASMWSPR-NRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLE 330
R++ + +++P +R+G R + +D +F D +
Sbjct: 160 QRRIAQETRDIYAPMAHRLGIRRWQIEL------------EDLAFYYLDPEIYQR----- 202
Query: 331 AVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTS 390
+ ++ + +R F++++ + QKK +Q+AGI+ C
Sbjct: 203 --IKEEVAQSQAERNSFINEVI--AILQKK---MQEAGIS------C------------- 236
Query: 391 YIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYS 450
++ R K SI+ KM+R++V I ++YD A RV+VG +I+ CY
Sbjct: 237 -------SVYGRPKHFASIYGKMQRRNVDISELYDLLAFRVLVG---------SIKDCYE 280
Query: 451 LLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGL 510
L +VH +W P+ G F DYI PK + YQSLHTAV GP G +EVQIRT++MH AE G+
Sbjct: 281 ALGVVHTIWKPVPGRFRDYIGMPKANMYQSLHTAVVGPMGQRMEVQIRTEEMHRIAEEGI 340
Query: 511 AAHWLYKE 518
AAHW YKE
Sbjct: 341 AAHWRYKE 348
>gi|323485946|ref|ZP_08091279.1| hypothetical protein HMPREF9474_03030 [Clostridium symbiosum
WAL-14163]
gi|323693057|ref|ZP_08107277.1| hypothetical protein HMPREF9475_02140 [Clostridium symbiosum
WAL-14673]
gi|355621474|ref|ZP_09046124.1| hypothetical protein HMPREF1020_00203 [Clostridium sp. 7_3_54FAA]
gi|323400736|gb|EGA93101.1| hypothetical protein HMPREF9474_03030 [Clostridium symbiosum
WAL-14163]
gi|323502938|gb|EGB18780.1| hypothetical protein HMPREF9475_02140 [Clostridium symbiosum
WAL-14673]
gi|354823569|gb|EHF07899.1| hypothetical protein HMPREF1020_00203 [Clostridium sp. 7_3_54FAA]
Length = 761
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 199/419 (47%), Gaps = 95/419 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA A AH Q R++G+PY+ H + ILA L + +T+VAGILHDVV+D
Sbjct: 46 VEKAYDIAYNAHKEQKRRSGEPYIIHPLCVAIILADL-----ELDKETIVAGILHDVVED 100
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+ + FG+EVA LV GV++L+ I + +++ + N+R
Sbjct: 101 TVMTEEELTSIFGEEVALLVDGVTKLTQI---------------SWSMDKVEIQAENLRK 145
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
++ A+A++ +I LA RL + L + ++P+ ++ + ++
Sbjct: 146 MFL-------AMAKDIRVILIKLADRL------HNMRTLQY--MKPEKQKEKARETMDIY 190
Query: 284 SP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
+P +R+G S+ +T DD LS+K L V
Sbjct: 191 APIADRLGISKI------------KTELDD----------LSLKYLEPEV---------- 218
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
++LA+ +K A+ GI E+A G+E + R
Sbjct: 219 -----YYELAEKVALRKDAREAFVQGIVFEVKSHMEDA-------------GIEAKVDGR 260
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
+K +SI+ KM +D + ++YD A+R+VV ++ CY+ L ++H L+ PI
Sbjct: 261 VKHFFSIYKKMVNQDKTLEQIYDLFAVRIVV---------ETVKDCYAALGVIHELYKPI 311
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
G F DYI PKP+ YQSLHT + G E+QIRT +MH AE+G+AAHW YKE+G+
Sbjct: 312 PGRFKDYIAMPKPNMYQSLHTTLISSSGQPFEIQIRTFEMHRTAEYGIAAHWKYKESGS 370
>gi|78778579|ref|YP_396691.1| guanosine-3',5'-bis(diphosphate) 3'-diphosphatase, (ppGpp)ase
[Prochlorococcus marinus str. MIT 9312]
gi|78712078|gb|ABB49255.1| metal dependent phosphohydrolase [Prochlorococcus marinus str. MIT
9312]
Length = 769
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 137/429 (31%), Positives = 196/429 (45%), Gaps = 97/429 (22%)
Query: 100 NDEQ---VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
NDE + KA A +AH GQFR +G+PY+ H + +L + S+ + AG+
Sbjct: 56 NDENQNLLVKAFKLAYKAHDGQFRASGEPYIIHPVAVANLLKEIGASTS-----VIAAGL 110
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELAD 216
LHDVV+D L IE FG EV LV GV++L I+ N T E
Sbjct: 111 LHDVVEDTGIDLSEIETNFGLEVKILVEGVTKLG----------GIHFNNRTEAQAE--- 157
Query: 217 RLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 276
N+R ++ A+A + ++ LA RL L D + +I R+ R
Sbjct: 158 ---NLRKMFL-------AMASDIRVVLVKLADRLHNMRTIEWLNDEK----KLRIARETR 203
Query: 277 ADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFD 336
A + NR+G +R + +D +F + KDL + +
Sbjct: 204 EIYAPL---ANRLGINRF------------KWELEDLAFKFLEPK--EYKDLKDQIA--- 243
Query: 337 ILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGME 396
K S+ +K+ KV + L KE L+S + E
Sbjct: 244 ---------------VKRSDREKRLKVTLN--------------LMKENLVSAG-LKNFE 273
Query: 397 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 456
+T R K LY I+SKM R+ H++YD ALR++V + + CY L +VH
Sbjct: 274 IT--GRPKHLYGIWSKMERQQKHFHEIYDVAALRIIVDNSD---------SCYRALAVVH 322
Query: 457 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 516
+ PI G F DYI PKP+GYQSLHT+V G +EVQIRT MH+ AE+G+AAHW Y
Sbjct: 323 DTFKPIPGRFKDYIGLPKPNGYQSLHTSVIGRH-RPIEVQIRTTSMHQIAEYGIAAHWQY 381
Query: 517 KETGNKLQS 525
KE G+ +S
Sbjct: 382 KEGGSPAKS 390
>gi|438002543|ref|YP_007272286.1| GTP pyrophosphokinase [Tepidanaerobacter acetatoxydans Re1]
gi|432179337|emb|CCP26310.1| GTP pyrophosphokinase [Tepidanaerobacter acetatoxydans Re1]
Length = 716
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 129/415 (31%), Positives = 194/415 (46%), Gaps = 94/415 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA FAK AH GQ R +G+ +++H + ILA L + + T+ AG+LHDVV+D
Sbjct: 17 IRKAYMFAKEAHSGQHRVSGELFISHPLGVAMILADL-----ELDIPTIAAGLLHDVVED 71
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
++ IE+ FG E+A LV GV++L + + E+ A+ N+R
Sbjct: 72 TDYTIEDIEKIFGSEIAILVDGVTKLGKL-------------EFKTKEEQQAE---NLRK 115
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
++ A+A++ +I LA RL MR L SM
Sbjct: 116 MFF-------AMAKDIRIILIKLADRL----------------------HNMRT-LKSMP 145
Query: 284 SPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRK 343
+ R + + TI PL R + +K LE L+ R
Sbjct: 146 EEKQR---EKAMETIDIFAPLAHRLG------------ISKIKWELED------LAFRYL 184
Query: 344 RTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRL 403
+ +DL +K AK Q+ + ++ + L + LL + G+ + R
Sbjct: 185 EPEHYYDLV-----EKVAKKRQERENHINKMI---DILNERLLAT-----GINAEIQGRP 231
Query: 404 KSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPID 463
K YSI+ KM+ ++ ++YD A+RV+V ++ CY L +VH LW PI
Sbjct: 232 KHFYSIYKKMKDQNKTFEQIYDLTAVRVIVN---------TVKDCYGALGVVHTLWKPIP 282
Query: 464 GEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
G F DYI PKP+ YQSLHT V G LE+QIRT +MH+ AE+G+AAHW YKE
Sbjct: 283 GRFKDYIAMPKPNMYQSLHTTVIDSSGDPLEIQIRTYEMHKTAEYGIAAHWRYKE 337
>gi|332799394|ref|YP_004460893.1| (p)ppGpp synthetase I SpoT/RelA [Tepidanaerobacter acetatoxydans
Re1]
gi|332697129|gb|AEE91586.1| (p)ppGpp synthetase I, SpoT/RelA [Tepidanaerobacter acetatoxydans
Re1]
Length = 721
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 129/415 (31%), Positives = 194/415 (46%), Gaps = 94/415 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA FAK AH GQ R +G+ +++H + ILA L + + T+ AG+LHDVV+D
Sbjct: 22 IRKAYMFAKEAHSGQHRVSGELFISHPLGVAMILADL-----ELDIPTIAAGLLHDVVED 76
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
++ IE+ FG E+A LV GV++L + + E+ A+ N+R
Sbjct: 77 TDYTIEDIEKIFGSEIAILVDGVTKLGKL-------------EFKTKEEQQAE---NLRK 120
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
++ A+A++ +I LA RL MR L SM
Sbjct: 121 MFF-------AMAKDIRIILIKLADRL----------------------HNMRT-LKSMP 150
Query: 284 SPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRK 343
+ R + + TI PL R + +K LE L+ R
Sbjct: 151 EEKQR---EKAMETIDIFAPLAHRLG------------ISKIKWELED------LAFRYL 189
Query: 344 RTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRL 403
+ +DL +K AK Q+ + ++ + L + LL + G+ + R
Sbjct: 190 EPEHYYDLV-----EKVAKKRQERENHINKMI---DILNERLLAT-----GINAEIQGRP 236
Query: 404 KSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPID 463
K YSI+ KM+ ++ ++YD A+RV+V ++ CY L +VH LW PI
Sbjct: 237 KHFYSIYKKMKDQNKTFEQIYDLTAVRVIVN---------TVKDCYGALGVVHTLWKPIP 287
Query: 464 GEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
G F DYI PKP+ YQSLHT V G LE+QIRT +MH+ AE+G+AAHW YKE
Sbjct: 288 GRFKDYIAMPKPNMYQSLHTTVIDSSGDPLEIQIRTYEMHKTAEYGIAAHWRYKE 342
>gi|255658298|ref|ZP_05403707.1| GTP diphosphokinase [Mitsuokella multacida DSM 20544]
gi|260849615|gb|EEX69622.1| GTP diphosphokinase [Mitsuokella multacida DSM 20544]
Length = 740
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 129/457 (28%), Positives = 216/457 (47%), Gaps = 104/457 (22%)
Query: 80 EEQPGTF--IVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRIL 137
E++P T I+D V + P + + +++A A++AH GQ R +G+ Y+ H +H +IL
Sbjct: 5 EKEPVTIENILDAVK-SYSPKADLDLIRRAYELARKAHAGQTRVSGEAYIIHPLHVAQIL 63
Query: 138 AMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLR 197
L T+ A +LHDVV+D + ++E FGDEVA L+ GV++L
Sbjct: 64 TQLHLDDA-----TISAALLHDVVEDTIYTNDQMKEMFGDEVAMLIDGVTKL-------- 110
Query: 198 RHRRINVNQGTLGHEELAD-RLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWAL 255
G L ++ + +L + R ++ A+A++ +I LA RL + L
Sbjct: 111 ---------GRLQYKSKEEAQLESYRKMFL-------AMAKDIRVIMIKLADRLHNMRTL 154
Query: 256 KAELEDLCFAVLQPQIFRKMRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDES 314
K ED Q +I R + +++P NR+G S
Sbjct: 155 KYMREDK-----QKRIAR----ETIEIYAPLANRLGISS--------------------- 184
Query: 315 FTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSL 374
++ L ++ LE + +D++ + +++ K +S Q K K+ +
Sbjct: 185 -IKWELEDLCLR-YLEPEIYYDLVENVKQKRKERQTFIDTSIEQIKEKLAE--------- 233
Query: 375 VACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVG 434
++ +S R K YSI+ KM+R + + ++YD A+RV+V
Sbjct: 234 ------------------AHIKADISGRAKHFYSIYKKMKRDNKELSEIYDLSAVRVLVD 275
Query: 435 DKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALE 494
+++ CY +L ++H +W PI G F DYI PK +GYQSLHT V G LE
Sbjct: 276 ---------SVKDCYGVLGVIHAMWKPIPGRFKDYIAMPKSNGYQSLHTTVM-TRGYPLE 325
Query: 495 VQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDE 531
+QIRT MH+ +E+G+AAHW YKE G ++ ++D+
Sbjct: 326 IQIRTFAMHQVSEYGVAAHWKYKEAGKGAKATGAVDQ 362
>gi|86609008|ref|YP_477770.1| RelA/SpoT family protein [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557550|gb|ABD02507.1| RelA/SpoT family protein [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 760
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 135/420 (32%), Positives = 204/420 (48%), Gaps = 97/420 (23%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+++A F+ H GQ RK+GDPY+ H + +A L+ G AV TV AG+LHDV++D
Sbjct: 52 LRRAFEFSYCLHQGQKRKSGDPYIAHPV----AVATLLRELGGDAV-TVAAGLLHDVIED 106
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+ ++E EFG EV LV GV++LS + N + T E+ A+ N R
Sbjct: 107 TEVTPEALEAEFGSEVRLLVEGVTKLS----------KFNFSSKT---EQQAE---NFRR 150
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
++ A+A++ +I LA RL + L + L P R++ A+ ++
Sbjct: 151 MFV-------AMAKDIRVIVVKLADRL------HNMRTLQY--LSPSKQRQIAAETMEIF 195
Query: 284 SP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
+P NR+G + K LE + F L
Sbjct: 196 APLANRLG-------------------------------IWHFKWELEDLA-FKYLDYEA 223
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGME-VTLSS 401
R + +L + A+++A++ A E L + LL + G+E +S
Sbjct: 224 YRK--IQELVNAKRAEREAEIQ-----------AFIEELRQNLLQA-----GLEHFEISG 265
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K LYSI+ KM+++ H++YD A+RV+V + CY +L +VH + P
Sbjct: 266 RPKHLYSIYRKMQQQHKEFHEIYDLSAVRVIVHTNSE---------CYRVLAVVHNCFRP 316
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
I G F DYI PK + YQSLHTAV G G +EVQIRT++MH AE+G+AAHW YKE G+
Sbjct: 317 IPGRFKDYIGLPKANRYQSLHTAVIGLQGRPVEVQIRTEEMHRVAEYGIAAHWKYKEAGS 376
>gi|427428065|ref|ZP_18918107.1| GTP pyrophosphokinase [Caenispirillum salinarum AK4]
gi|425882766|gb|EKV31445.1| GTP pyrophosphokinase [Caenispirillum salinarum AK4]
Length = 725
Score = 159 bits (403), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 117/422 (27%), Positives = 200/422 (47%), Gaps = 93/422 (22%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P +++ + +A FA + H Q R +GDPY +H + IL + + +++ +
Sbjct: 16 PQADEDALNRAYVFAMKMHGSQLRASGDPYFSHPVEVAGIL-----TDYRLDCASIITAL 70
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELAD 216
LHD ++D +L IE+ FG +VA+LV GV++L+ RI + + A
Sbjct: 71 LHDTIEDTPATLEEIEKLFGKQVARLVDGVTKLT----------RIELTSDS------AK 114
Query: 217 RLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 276
+ N R + A++++ ++ LA R+ + L F + +P+ +++
Sbjct: 115 QAENFRKLLL-------AMSEDIRVLLVKLADRM------HNMRTLHF-IKKPEKRQRIA 160
Query: 277 ADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFD 336
A+ +++P + RI L++R ++
Sbjct: 161 AETMEIYAP-----LAERIGMDAWKMELEDRAFAE------------------------- 190
Query: 337 ILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGME 396
LH A+ S + + + G + S++A E + +++ S G+E
Sbjct: 191 -----------LHPDARESIMTRLQYLREQGGGLVDSILA-----ELKRVLAES---GVE 231
Query: 397 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 456
V LS R KS +SI+ KM+ KDV ++ D A RV+V P+++ CY L ++H
Sbjct: 232 VELSGREKSPFSIYKKMQMKDVAFEQLSDIMAFRVIV---------PSVEDCYRALGVIH 282
Query: 457 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 516
+ + G F DYI PKP+GYQSLHT + GP+ +EVQIRT+ MHE AE G+AAHW Y
Sbjct: 283 GAYPMVPGRFKDYISTPKPNGYQSLHTGIIGPEKHRIEVQIRTKAMHEIAELGVAAHWSY 342
Query: 517 KE 518
K+
Sbjct: 343 KQ 344
>gi|78185706|ref|YP_378140.1| metal dependent phosphohydrolase [Synechococcus sp. CC9902]
gi|78170000|gb|ABB27097.1| metal dependent phosphohydrolase [Synechococcus sp. CC9902]
Length = 776
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 133/419 (31%), Positives = 194/419 (46%), Gaps = 102/419 (24%)
Query: 107 AIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACE 166
A F + H GQFR +GDPY+ H + +L + S+ + AG LHDVV+D
Sbjct: 72 AFDFGFQLHEGQFRASGDPYIVHPVAVADLLRDIGASA-----PVIAAGFLHDVVEDTDV 126
Query: 167 SLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTIYA 226
SL I+E FG EV +LV GV++L I + N T E N+R ++
Sbjct: 127 SLDEIQEHFGSEVRELVEGVTKLGGI----------HFNDRTEAQAE------NLRRMFM 170
Query: 227 LPPAKARAVAQETLLIWCSLASRL----GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
A+A + ++ LA R+ L ALK E +I R+ R A +
Sbjct: 171 -------AMASDIRVVLVKLADRVHNMRTLGALKEEKRQ--------RIARETREIYAPL 215
Query: 283 WSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
NR+G R + +D +F + + +++ + V
Sbjct: 216 A---NRLGIGRFKWEL------------EDLAFKLLEPE--AFREIQQEV---------- 248
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
A K+++ Q G+ + L E L++ + + G EV S R
Sbjct: 249 --------------ATKRSEREQRLGVTVGLL---NERLQR------AGLEGCEV--SGR 283
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K LY I+SKM R+ H++YD ALR++ P+++ CY L +VH + PI
Sbjct: 284 PKHLYGIWSKMERQQKAFHEIYDVAALRIIT---------PSVETCYRALAVVHDTFRPI 334
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
G F DYI PKP+GYQSLHTAV G +EVQIRT +MH+ AE G+AAHW YKE G+
Sbjct: 335 PGRFKDYIGLPKPNGYQSLHTAVIGRH-RPIEVQIRTLEMHQVAEFGIAAHWKYKEGGS 392
>gi|253995493|ref|YP_003047557.1| RelA/SpoT family protein [Methylotenera mobilis JLW8]
gi|253982172|gb|ACT47030.1| RelA/SpoT family protein [Methylotenera mobilis JLW8]
Length = 666
Score = 159 bits (402), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 140/471 (29%), Positives = 216/471 (45%), Gaps = 96/471 (20%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
Y + + E V++A A A+ TG+P L H T IL L + ++++A
Sbjct: 29 YSLADVELVRQACQLATLAYDAHAELTGEPLLQHATSTAAILVSLNLDA-----ESIIAT 83
Query: 156 ILHDV---VDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE 212
IL+ V +D+ E+L + FG+ VA+LV G+ R++ + + R Q +
Sbjct: 84 ILYAVPAHIDNWQETL---KLRFGNNVARLVEGLLRITQVQEFSELERLQQQEQEDADNS 140
Query: 213 ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 272
+ + L M A+ Q+ ++ LA R QI
Sbjct: 141 KQVESLRKMLL----------AMVQDIRVVLIKLAER-------------------TQIL 171
Query: 273 RKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAV 332
R + S +V +R I I S PL R + D + ++ L
Sbjct: 172 RSLAGA-----SREQQVLIAREIQGIFS--PLANRLGVWQLKWEMEDLSLRYLEPQLYKE 224
Query: 333 VPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYI 392
V + S R R +++ D+ EE L+++L +
Sbjct: 225 VAKLLDSRRVDREQYIADV--------------------------EELLKQKLAQA---- 254
Query: 393 PGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLL 452
G++ +S R K +YSI +KMRRK++ +++D RA+R++V D ++ CYS L
Sbjct: 255 -GIQAEVSGRPKHIYSIINKMRRKNLDFEQLFDVRAVRILVED---------VKDCYSAL 304
Query: 453 DIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAA 512
+V LW PI GEFDDYI PK + Y+SLHTAV GP+G ALEVQIRT +MH+Y+E G+AA
Sbjct: 305 SLVQTLWQPIPGEFDDYIARPKSNNYRSLHTAVSGPEGLALEVQIRTHEMHQYSELGVAA 364
Query: 513 HWLYKETGNKLQSISSMDES-----DIEASSSLSKDTDD-HNPLDTDLFQK 557
HW YKE G +S + +DE I A + D+ D T+LFQ+
Sbjct: 365 HWRYKEGG---KSDNILDEKIAWLRQILAWKEGATDSSDLLEQFKTELFQE 412
>gi|333909817|ref|YP_004483403.1| (p)ppGpp synthetase I SpoT/RelA [Marinomonas posidonica
IVIA-Po-181]
gi|333479823|gb|AEF56484.1| (p)ppGpp synthetase I, SpoT/RelA [Marinomonas posidonica
IVIA-Po-181]
Length = 705
Score = 159 bits (402), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 133/462 (28%), Positives = 215/462 (46%), Gaps = 106/462 (22%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
+V++A +A++AH GQ RK+G+PY+TH + +IL+ L + D + A +LHDV++
Sbjct: 22 KVKRAYYYAEQAHDGQKRKSGEPYVTHPLAVAKILSEL-----RMDCDGLSAALLHDVIE 76
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMR 222
D S ++ +FG+EVA LV GVS+L+++ + +L + HN +
Sbjct: 77 DTGISREALAAQFGEEVASLVDGVSKLTHLE----------------FNNQLEKQAHNFQ 120
Query: 223 TIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLAS 281
+ A A+A + +I LA RL + L A + R++ +
Sbjct: 121 KM-------AMAMADDIRVILVKLADRLHNMRTLDA---------MPAHKKRRIAKETLD 164
Query: 282 MWSP-RNRVG-YSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILS 339
+++P NR+G Y+ R+ D ES +A P
Sbjct: 165 IYAPIANRLGMYNVRV---------------DLESLA------------FQAYYPM---- 193
Query: 340 DRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTL 399
R + L Q++ K Q E+ + EL + YI E +
Sbjct: 194 ----RAQMLQRAIHKKYGQQRIKDTQ----------KLEDTIRSEL--AADYI---EAKI 234
Query: 400 SSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLW 459
S R K +YSI+ KM +K + ++ D +R+V D++ + CY +L ++H L+
Sbjct: 235 SVREKHIYSIYQKMDKKRRSLDEIMDVMGVRIVT-DRHDS--------CYRILGVIHALF 285
Query: 460 IPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET 519
PI+G F DYI PK +GYQSLHT V G +G +E+QIRT++M A +G+AAHW YK
Sbjct: 286 KPIEGRFKDYIAVPKSNGYQSLHTTVLGTNGIPMEIQIRTEEMDLVANNGIAAHWAYKVN 345
Query: 520 GNKLQSISSMDESDIEASSSLSKDTDDHNPLD------TDLF 555
G + S+ D + S L NP++ +DLF
Sbjct: 346 GTS-SAPSNHDRATKWVKSLLEIQQKTRNPVEFVDNVKSDLF 386
>gi|302335523|ref|YP_003800730.1| (p)ppGpp synthetase I SpoT/RelA [Olsenella uli DSM 7084]
gi|301319363|gb|ADK67850.1| (p)ppGpp synthetase I, SpoT/RelA [Olsenella uli DSM 7084]
Length = 781
Score = 159 bits (402), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 129/437 (29%), Positives = 201/437 (45%), Gaps = 99/437 (22%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
++ A +FA H Q R++G+PY+ H + ILA + K D + A +LHD V+
Sbjct: 40 KIDAAYSFAADFHRDQRRRSGEPYINHPVEVALILAKDL----KMDEDPICAALLHDTVE 95
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMR 222
D +L + E FG VA+LV GV++L+ ++ ++ ++ N+R
Sbjct: 96 DTSATLDDLTERFGATVAELVDGVTKLT------------SIEVSSMDEKQAL----NLR 139
Query: 223 TIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
++ A++++ ++ LA RL MR LA++
Sbjct: 140 KMFL-------AMSKDIRVVIIKLADRL----------------------HNMRT-LAAL 169
Query: 283 WSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
P +R + R T V +P D S S+K LE + F + D
Sbjct: 170 --PPDRRVFKARETMDVYAPLADRLGIS-------------SIKWELEDLAFFYLNPDEY 214
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
+R + +++ Q + ++ G L + I G ++ R
Sbjct: 215 ERIARMVQESRAQREQNTDEAIKTLGDELARV----------------GITGFQI--HGR 256
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVV---VGDKNGTLHGPAIQCCYSLLDIVHRLW 459
K L+SI+ KM RK +YD A+RV+ VGD CYS L VH +W
Sbjct: 257 PKHLWSIYQKMTRKGKKFTDIYDLIAIRVLTESVGD------------CYSTLGAVHTVW 304
Query: 460 IPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET 519
P+ G F DYI PKP+GYQSLHT V G D +E+QIRT +MH AE+G+AAHWLYK++
Sbjct: 305 HPLPGRFKDYIAMPKPNGYQSLHTTVIGFDARPIEIQIRTFEMHSQAEYGIAAHWLYKKS 364
Query: 520 GNKLQSISSMDESDIEA 536
GN +S DE+D+++
Sbjct: 365 GNSSGRMSR-DEADVDS 380
>gi|421186884|ref|ZP_15644265.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Oenococcus
oeni AWRIB418]
gi|399965134|gb|EJN99760.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Oenococcus
oeni AWRIB418]
Length = 748
Score = 159 bits (401), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 138/437 (31%), Positives = 196/437 (44%), Gaps = 95/437 (21%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
++V A AK+ H GQ RK+G+ Y+ H I ILA L K DT+ AG LHDVV
Sbjct: 26 KRVDSAYQLAKKMHAGQKRKSGEDYIYHPIQVAGILADL-----KMDPDTIAAGFLHDVV 80
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNM 221
+D E+ I + +GD+VA +V G + +L R H H +L
Sbjct: 81 EDTPETNDEIRQNYGDDVADIVDG------VTKLGRIHYESTEENMAENHRKLL------ 128
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLAS 281
A+A++ +I LA RL MR
Sbjct: 129 -----------LAMAKDVRVIIVKLADRL----------------------HNMR----- 150
Query: 282 MWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
T V P R AS+ H L + ++ + LS R
Sbjct: 151 --------------TLQVHRPEKQHRIASETLDIYAPLAHRLGLANIK---WELEDLSLR 193
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
H +AK ++++ + DA IA + + +EK +IS I EVT
Sbjct: 194 YLDPDEYHRIAKMMHSRREER---DADIA-----SATKQIEK--VISDLKIGHFEVT--G 241
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI+ KM K ++YD A+RV+V ++ CY+ L +H W P
Sbjct: 242 RPKHIYSIYRKMTDKHKQFSEIYDLLAIRVLVD---------SVADCYAALGTIHANWKP 292
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET-G 520
+ G F DYI PKP+GYQSLHT + GP+G LEVQIRT +MH+ AE G+AAHW YKE G
Sbjct: 293 LPGRFKDYIALPKPNGYQSLHTTIIGPNGHPLEVQIRTFEMHQVAEFGVAAHWAYKENKG 352
Query: 521 NKLQS-ISSMDESDIEA 536
++ Q+ +S D+ + A
Sbjct: 353 SEKQARVSDSDQQHLNA 369
>gi|86606590|ref|YP_475353.1| RelA/SpoT family protein [Synechococcus sp. JA-3-3Ab]
gi|86555132|gb|ABD00090.1| RelA/SpoT family protein [Synechococcus sp. JA-3-3Ab]
Length = 760
Score = 159 bits (401), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 131/420 (31%), Positives = 197/420 (46%), Gaps = 97/420 (23%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+++A FA H GQ RK+GDPY+ H + +L L G AV TV AG+LHDVV+D
Sbjct: 52 LRRAFEFAYCLHKGQKRKSGDPYIAHPVAVASLLREL----GGDAV-TVAAGLLHDVVED 106
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L ++E EFG EV LV GV++LS + N + T E N R
Sbjct: 107 TEVTLEALEAEFGPEVRLLVEGVTKLS----------QFNFSSKTEQQAE------NFRR 150
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
++ A+A++ +I LA RL + L + L P +++ A+ ++
Sbjct: 151 MFV-------AMAKDIRVIVVKLADRL------HNMRTLQY--LPPHKQKQIAAETMEIF 195
Query: 284 SP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
+P NR+G + +D +F D
Sbjct: 196 APLANRLGI------------WHFKWELEDLAFKYLDYEAYRQ----------------- 226
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGME-VTLSS 401
+ +L + ++++A++ A E L K L+ G+E +S
Sbjct: 227 -----IQELVNAKRSEREAEIQ-----------AFIEELRKHLIQG-----GLEHFEISG 265
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K LY I+ KM+++ H++YD A+RV+V + CY +L +VH + P
Sbjct: 266 RPKHLYGIYRKMQQQRKEFHEIYDLLAVRVIVQ---------TVSECYRVLAVVHNCFRP 316
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
I G F DYI PK + YQSLHTAV G G +EVQIRT++MH AE+G+AAHW YKE G+
Sbjct: 317 IPGRFKDYIGLPKANRYQSLHTAVIGLQGRPVEVQIRTEEMHRVAEYGIAAHWKYKEAGS 376
>gi|37522317|ref|NP_925694.1| (p)ppGpp 3'-pyrophosphohydrolase [Gloeobacter violaceus PCC 7421]
gi|35213317|dbj|BAC90689.1| (p)ppGpp 3'-pyrophosphohydrolase [Gloeobacter violaceus PCC 7421]
Length = 758
Score = 159 bits (401), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 186/419 (44%), Gaps = 96/419 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ +A FA R H GQ R +G+PY+ H + +L L S V AG LHD+++D
Sbjct: 60 IARAFDFAYRLHTGQNRASGEPYILHPVQVAGMLRELGSDSA-----MVAAGFLHDIIED 114
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+ +E+ FG++V LV GV++LS + R+ N R
Sbjct: 115 TATTSEDLEQLFGEQVRLLVEGVTKLSKFTFDSKEERQAE----------------NFRR 158
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 283
++ A+AQ+ +I LA RL + L F Q R++ + ++
Sbjct: 159 MFL-------AMAQDIRVIVVKLADRL------HNMRTLDFLPTHKQ--RRIAQETMDIF 203
Query: 284 SP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
+P NR+G R + +D +F D L + R
Sbjct: 204 APLANRLGIWRF------------KWELEDLAFKYLDPDAYRHMQKL-------VSQKRA 244
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
+R +F+ + ++ A+ I +I G ++ R
Sbjct: 245 EREQFIDQVVQTIRAE----------------------------IDRQHIHG---EITGR 273
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K L+ I+ KM+R+ H++YD A+R++V + + CY L IVH + PI
Sbjct: 274 PKHLWGIYQKMQRQQKEFHEIYDVSAVRIIVEQQ---------EECYRALSIVHNKFRPI 324
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
G F DYI PKP+ YQSLHTAV GP+G LEVQIRT MH AE+G+AAHW YKE G+
Sbjct: 325 PGRFKDYIGLPKPNRYQSLHTAVVGPEGKPLEVQIRTVDMHRIAEYGIAAHWKYKEAGS 383
>gi|73747961|ref|YP_307200.1| GTP pyrophosphokinase [Dehalococcoides sp. CBDB1]
gi|289431960|ref|YP_003461833.1| (p)ppGpp synthetase I SpoT/RelA [Dehalococcoides sp. GT]
gi|452204331|ref|YP_007484460.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Dehalococcoides
mccartyi BTF08]
gi|73659677|emb|CAI82284.1| GTP pyrophosphokinase [Dehalococcoides sp. CBDB1]
gi|288945680|gb|ADC73377.1| (p)ppGpp synthetase I, SpoT/RelA [Dehalococcoides sp. GT]
gi|452111387|gb|AGG07118.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Dehalococcoides
mccartyi BTF08]
Length = 728
Score = 159 bits (401), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 135/411 (32%), Positives = 190/411 (46%), Gaps = 90/411 (21%)
Query: 117 GQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFG 176
GQ RK+G+P++ H ++ LA L + T+ A +LHDV +DA SL I+++FG
Sbjct: 35 GQMRKSGEPFIEHPLNVAMTLADLQLDAA-----TLSAALLHDVPEDANISLEQIDKKFG 89
Query: 177 DEVAKLVAGVSRLSYI--NQLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARA 234
+VAKLV GV++LS + + RR N +L E N+R + A
Sbjct: 90 ADVAKLVDGVTKLSKLALGPAIEDARRPGGN-ASLRQAE------NLRKMLV-------A 135
Query: 235 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRR 294
+A++ +++ LA R F MR A SP R ++
Sbjct: 136 MAEDLRVVFIKLADR----------------------FHNMRTLQA--LSPEKRRSIAKE 171
Query: 295 ITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKS 354
I + PL R + +K LE + F L R R + +L S
Sbjct: 172 TMEIYA--PLAHRLG------------IWELKWQLEDLA-FRYLDPRHYRQ--VANLVDS 214
Query: 355 SEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMR 414
AQ++ + + I + EK G+ V +S R K LYSI+ KM
Sbjct: 215 KLAQRQNYLEHVSAI-------LQGEFEKN---------GLNVEVSGRPKHLYSIYQKME 258
Query: 415 R---KDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIV 471
+ + +YD ALRV+V D I CY + IVH LW PI G FDDYI
Sbjct: 259 KYASQGKQFEDIYDVLALRVLVND---------IPDCYHAVGIVHSLWHPIPGAFDDYIA 309
Query: 472 NPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
NPKP+GYQSLHTAV + LEVQ+RT +MH AE+G+AAHW YK G +
Sbjct: 310 NPKPNGYQSLHTAVMSLGTTPLEVQVRTYQMHHIAEYGVAAHWRYKTAGKE 360
>gi|395240870|ref|ZP_10417894.1| GTP diphosphokinase [Lactobacillus gigeriorum CRBIP 24.85]
gi|394475652|emb|CCI87871.1| GTP diphosphokinase [Lactobacillus gigeriorum CRBIP 24.85]
Length = 748
Score = 158 bits (400), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 129/425 (30%), Positives = 196/425 (46%), Gaps = 103/425 (24%)
Query: 99 FNDEQ---VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
N+EQ V+ A FA +AH GQFR +G PY+ H LA L DT+ AG
Sbjct: 23 MNEEQLAFVEHAYDFANKAHEGQFRASGQPYIIHPTQVAGTLANLGLDP-----DTIAAG 77
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLS-YINQLLRRHRRINVNQGTLGHEEL 214
LHD V+D + I+ FG++VA +V GV++L+ Y Q H+E
Sbjct: 78 FLHDTVEDTPVTNDDIKNIFGEDVAFIVDGVTKLNKYQYQ---------------SHQEF 122
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFR 273
H I A+A++ +I LA RL + L+ L+P R
Sbjct: 123 LAENHRKMLI---------AMAKDLRVIMVKLADRLHNMHTLEH---------LRPDKQR 164
Query: 274 KMRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAV 332
++ ++ +++P +R+G I +I + +D SF H L+ V
Sbjct: 165 RIASETMDIYAPLADRLG----IGSI--------KWELEDISF-----HYLNPDAYYRIV 207
Query: 333 VPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYI 392
D+ R +R +++ D A++ + ++L
Sbjct: 208 GLMDV--KRSERERYISD-------------------AISVMKKTLDSL----------- 235
Query: 393 PGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLL 452
G++ + R K +YSI+ KM K +YD A+RV+V + ++ CY++L
Sbjct: 236 -GIQYQIYGRPKHIYSIYKKMVNKHKDFEDIYDLLAVRVLVKN---------VRDCYAVL 285
Query: 453 DIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAA 512
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT++MHE AE+G+AA
Sbjct: 286 GAVHTEWKPMPGRFKDYIAVPKVNGYQSLHTTIIGPGGKPLEIQIRTEQMHEVAEYGVAA 345
Query: 513 HWLYK 517
HW YK
Sbjct: 346 HWAYK 350
>gi|116490651|ref|YP_810195.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Oenococcus
oeni PSU-1]
gi|290890065|ref|ZP_06553148.1| hypothetical protein AWRIB429_0538 [Oenococcus oeni AWRIB429]
gi|419758622|ref|ZP_14284937.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Oenococcus
oeni AWRIB304]
gi|419857019|ref|ZP_14379733.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Oenococcus
oeni AWRIB202]
gi|419858563|ref|ZP_14381234.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Oenococcus
oeni DSM 20252 = AWRIB129]
gi|421184442|ref|ZP_15641865.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Oenococcus
oeni AWRIB318]
gi|421188651|ref|ZP_15645987.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Oenococcus
oeni AWRIB419]
gi|421193977|ref|ZP_15651217.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Oenococcus
oeni AWRIB553]
gi|421194238|ref|ZP_15651460.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Oenococcus
oeni AWRIB568]
gi|421197168|ref|ZP_15654348.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Oenococcus
oeni AWRIB576]
gi|116091376|gb|ABJ56530.1| Guanosine polyphosphate pyrophosphohydrolase/synthetase [Oenococcus
oeni PSU-1]
gi|290480256|gb|EFD88897.1| hypothetical protein AWRIB429_0538 [Oenococcus oeni AWRIB429]
gi|399904650|gb|EJN92103.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Oenococcus
oeni AWRIB304]
gi|399964824|gb|EJN99458.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Oenococcus
oeni AWRIB419]
gi|399967156|gb|EJO01639.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Oenococcus
oeni AWRIB318]
gi|399970443|gb|EJO04736.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Oenococcus
oeni AWRIB553]
gi|399975682|gb|EJO09718.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Oenococcus
oeni AWRIB576]
gi|399978250|gb|EJO12206.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Oenococcus
oeni AWRIB568]
gi|410498511|gb|EKP89961.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Oenococcus
oeni DSM 20252 = AWRIB129]
gi|410498678|gb|EKP90126.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Oenococcus
oeni AWRIB202]
Length = 748
Score = 158 bits (400), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 138/437 (31%), Positives = 196/437 (44%), Gaps = 95/437 (21%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
++V A AK+ H GQ RK+G+ Y+ H I ILA L K DT+ AG LHDVV
Sbjct: 26 KRVDSAYQLAKKMHAGQKRKSGEDYIYHPIQVAGILADL-----KMDPDTIAAGFLHDVV 80
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNM 221
+D E+ I + +GD+VA +V G + +L R H H +L
Sbjct: 81 EDTPETNDEIRQNYGDDVADIVDG------VTKLGRIHYESTEENMAENHRKLL------ 128
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLAS 281
A+A++ +I LA RL MR
Sbjct: 129 -----------LAMAKDVRVIIVKLADRL----------------------HNMR----- 150
Query: 282 MWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
T V P R AS+ H L + ++ + LS R
Sbjct: 151 --------------TLQVHRPEKQHRIASETLDIYAPLAHRLGLANIK---WELEDLSLR 193
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
H +AK ++++ + DA IA + + +EK +IS I EVT
Sbjct: 194 YLDPDEYHRIAKMMHSRREER---DADIA-----SATKQIEK--VISDLKIGHFEVT--G 241
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI+ KM K ++YD A+RV+V ++ CY+ L +H W P
Sbjct: 242 RPKHIYSIYRKMTDKHKQFSEIYDLLAIRVLVD---------SVADCYAALGTIHANWKP 292
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET-G 520
+ G F DYI PKP+GYQSLHT + GP+G LEVQIRT +MH+ AE G+AAHW YKE G
Sbjct: 293 LPGRFKDYIALPKPNGYQSLHTTIIGPNGHPLEVQIRTFEMHQVAEFGVAAHWAYKENKG 352
Query: 521 NKLQS-ISSMDESDIEA 536
++ Q+ +S D+ + A
Sbjct: 353 SEKQARVSDSDQQHLNA 369
>gi|147668657|ref|YP_001213475.1| (p)ppGpp synthetase I SpoT/RelA [Dehalococcoides sp. BAV1]
gi|146269605|gb|ABQ16597.1| (p)ppGpp synthetase I, SpoT/RelA [Dehalococcoides sp. BAV1]
Length = 728
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 135/411 (32%), Positives = 190/411 (46%), Gaps = 90/411 (21%)
Query: 117 GQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFG 176
GQ RK+G+P++ H ++ LA L + T+ A +LHDV +DA SL I+++FG
Sbjct: 35 GQMRKSGEPFIEHPLNVAMTLADLQLDAA-----TLSAALLHDVPEDANISLEQIDKKFG 89
Query: 177 DEVAKLVAGVSRLSYI--NQLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARA 234
+VAKLV GV++LS + + RR N +L E N+R + A
Sbjct: 90 ADVAKLVDGVTKLSKLALGPAIEDARRPGGN-ASLRQAE------NLRKMLV-------A 135
Query: 235 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRR 294
+A++ +++ LA R F MR A SP R ++
Sbjct: 136 MAEDLRVVFIKLADR----------------------FHNMRTLQA--LSPEKRRSIAKE 171
Query: 295 ITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKS 354
I + PL R + +K LE + F L R R + +L S
Sbjct: 172 TMEIYA--PLAHRLG------------IWELKWQLEDLA-FRYLDPRHYRQ--VANLVDS 214
Query: 355 SEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMR 414
AQ++ + + I + EK G+ V +S R K LYSI+ KM
Sbjct: 215 KLAQRQNYLEHVSAI-------LQGEFEKN---------GLNVEVSGRPKHLYSIYQKME 258
Query: 415 R---KDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIV 471
+ + +YD ALRV+V D I CY + IVH LW PI G FDDYI
Sbjct: 259 KYASQGKQFEDIYDVLALRVLVND---------IPDCYHAVGIVHSLWHPIPGAFDDYIA 309
Query: 472 NPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
NPKP+GYQSLHTAV + LEVQ+RT +MH AE+G+AAHW YK G +
Sbjct: 310 NPKPNGYQSLHTAVMSLGTTPLEVQVRTYQMHHIAEYGVAAHWRYKTAGKE 360
>gi|255521241|ref|ZP_05388478.1| (p)ppGpp synthetase [Listeria monocytogenes FSL J1-175]
Length = 696
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 128/413 (30%), Positives = 190/413 (46%), Gaps = 97/413 (23%)
Query: 119 FRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDE 178
FRK+G+PY+ H I IL L K TV +G LHDVV+D +L +EE FG E
Sbjct: 1 FRKSGEPYIIHPIQVAGILVEL-----KMDPSTVASGFLHDVVEDTPVTLADLEEVFGSE 55
Query: 179 VAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQE 238
VA LV GV++L I HEE + N R ++ A+AQ+
Sbjct: 56 VAMLVDGVTKLGKIK--------------YKSHEE--QQAENHRKMFI-------AMAQD 92
Query: 239 TLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP-RNRVGYSRRITT 297
+I LA RL + L ++ Q R++ + +++P +R+G SR +
Sbjct: 93 IRVILIKLADRL------HNMRTLKHLPVEKQ--RRIANETLEIFAPLAHRLGISR-VKW 143
Query: 298 IVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEA 357
+ L R + + + H++ K R R ++LHD
Sbjct: 144 ELEDTAL--RYLNPQQYYRIV--HLMKQK--------------RDARERYLHD------- 178
Query: 358 QKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKD 417
V+ L L ++ +S R K +YSI+ KM ++
Sbjct: 179 -----VIDGVNENLDEL-------------------NIQADISGRPKHIYSIYRKMSEQN 214
Query: 418 VGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSG 477
+++YD A+R+VV +I+ C ++L I+H W P+ G F DYI PK +
Sbjct: 215 KQFNEIYDLLAVRIVVS---------SIKDCXAVLGIIHTRWKPMPGRFKDYIAMPKSNM 265
Query: 478 YQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMD 530
YQS+HT V GP G LEVQIRT +MH+ AE+G+AAHW YKE G + S +S D
Sbjct: 266 YQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAHWAYKE-GKVVNSKTSFD 317
>gi|254784428|ref|YP_003071856.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Teredinibacter turnerae T7901]
gi|237685288|gb|ACR12552.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Teredinibacter turnerae T7901]
Length = 704
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 128/432 (29%), Positives = 199/432 (46%), Gaps = 98/432 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V++A +A++AH GQFR++G+PY+TH + ILA + +++A +LHDV++D
Sbjct: 23 VKRAYYYAEQAHTGQFRRSGEPYITHPLAVANILASIHMDH-----QSLMAAMLHDVIED 77
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+I +FGD+VA++V GVS+L+ +I+ E+ A M
Sbjct: 78 TGIGKSAISHQFGDQVAEIVDGVSKLA----------KIDYESQA---EKQAKNFQKM-- 122
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
A A+A++ +I L+ RL + L A L P+ R++ + +
Sbjct: 123 --------AMAMARDLRVIVVKLSDRLHNMRTLGA---------LPPEKKRRIAKETLEI 165
Query: 283 WSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
++P +R+G + D R +D F A+ P
Sbjct: 166 YAPIAHRLGMN------------DWRIEFEDRGFA--------------AMHPL------ 193
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
R LH + +KA V + + ++E L T I G+ +
Sbjct: 194 --RATRLHASLQQVRGNRKAIVEK-----------IQSSIEMRLQRET--IEGLVI---G 235
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K LYSI++KMR K ++ D A R++V + I CY L +H L+ P
Sbjct: 236 REKHLYSIYNKMRGKHKSFEEIMDVYAFRIIVEN---------IDTCYRALGAIHNLYKP 286
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
EF DYI PK +GYQSLHT V G G +EVQIRT++M E A G+AAHWLYK G+
Sbjct: 287 KPNEFKDYIAIPKENGYQSLHTVVVGTQGVPIEVQIRTKEMDELASRGIAAHWLYKSNGD 346
Query: 522 KLQSISSMDESD 533
+ S D ++
Sbjct: 347 EESKNGSYDRAN 358
>gi|377809688|ref|YP_005004909.1| GTP pyrophosphokinase [Pediococcus claussenii ATCC BAA-344]
gi|361056429|gb|AEV95233.1| GTP pyrophosphokinase [Pediococcus claussenii ATCC BAA-344]
Length = 742
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 130/419 (31%), Positives = 200/419 (47%), Gaps = 101/419 (24%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
VQKA FA H Q R++G+ Y+ H I ILA L K +TV +G LHD V+D
Sbjct: 28 VQKACDFASYVHREQRRQSGEAYIMHPIQVAGILANL-----KMYPETVASGFLHDTVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+LG I+E FG +VA +V GVS++S I + NQ E+LA+ N R
Sbjct: 83 TLITLGDIQELFGKDVAVIVDGVSKISKI--------KYKSNQ-----EQLAE---NHRK 126
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
+ A++++ +I LA RL + L+ L+P+ R++ + +
Sbjct: 127 LLL-------AMSKDIRVIIVKLADRLHNMRTLEH---------LRPEKQRRISNETLEI 170
Query: 283 WSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFD-EHVLSMKDLLEAVVPFDILSD 340
++P R+G I+TI + +D S + + + L+ S
Sbjct: 171 YAPLAERLG----ISTI--------KWELEDTSLRYLNPQQYYRIVHLMN--------SR 210
Query: 341 RRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVT-L 399
R +R ++++ K + D +A+ L G+E T +
Sbjct: 211 RTQREEYIN------------KAIDDIKVAVDDL-------------------GLEYTEI 239
Query: 400 SSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLW 459
R K +YS++ KM + ++YD A+RV+ +I+ CY++L +H W
Sbjct: 240 YGRPKHIYSVYRKMVDQHKQFSQIYDLLAIRVITD---------SIRDCYAILGAIHTKW 290
Query: 460 IPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
P+ G F DYI PK + YQSLHT V GP+G LEVQIRT++MH AE+G+AAHW YKE
Sbjct: 291 KPMPGRFKDYIAMPKANMYQSLHTTVVGPEGRPLEVQIRTEEMHRVAEYGVAAHWAYKE 349
>gi|397670345|ref|YP_006511880.1| GTP diphosphokinase [Propionibacterium propionicum F0230a]
gi|395142267|gb|AFN46374.1| GTP diphosphokinase [Propionibacterium propionicum F0230a]
Length = 760
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 137/467 (29%), Positives = 213/467 (45%), Gaps = 107/467 (22%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P N ++ A A++ H GQ RK+GDPY+TH + ILA L + +VA
Sbjct: 53 HPKANLSLIEHAYRTAEQLHRGQKRKSGDPYITHPLAVATILAELGMTE-----PVLVAA 107
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
+LHD V+D +L + EEF DEVA++V GV++L + T G A
Sbjct: 108 LLHDTVEDTEYTLEQLREEFTDEVARMVDGVTKLDKV---------------TYGETAKA 152
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
+ + M A ++E ++ LA RL + + F L+P ++
Sbjct: 153 ETIRKM----------IMATSEEVRVLVIKLADRL------HNMRTIGF--LRPDKQVRI 194
Query: 276 RADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLS-MKDLLEAVV 333
+ ++++P +R+G + T+ + +D SF + V S + DL+
Sbjct: 195 ATETLNIFAPLAHRLG----MNTV--------KWELEDLSFQAIEPKVYSEIADLVAQQA 242
Query: 334 PFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIP 393
P R ++L DL A K+L+
Sbjct: 243 P--------GRERYLRDLI---------------------------AQFKQLMADNK--- 264
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
++ T+ R K YSI+ KM + +YD LRV+V + ++ CY +L
Sbjct: 265 -IKATIYGRPKHFYSIYQKMMVRGRDFADIYDLIGLRVLVDN---------VRDCYGVLG 314
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+ H W PI G F DYI NPK + YQSLHT V G G +E+QIRT +MH AE+G+AAH
Sbjct: 315 VAHSKWKPIPGRFKDYIANPKFNMYQSLHTTVLGDRGEPVELQIRTHEMHRRAEYGVAAH 374
Query: 514 WLYKETGNKLQSISSMDESDIEASSSL---SKDTDDHNP-LDTDLFQ 556
W YKE L++ + +E+ + A L SK+T+D LD+ LF+
Sbjct: 375 WKYKEN---LRNGVTPEEAGLRAMHQLGVMSKETEDPTEFLDSVLFE 418
>gi|325290218|ref|YP_004266399.1| (p)ppGpp synthetase I SpoT/RelA [Syntrophobotulus glycolicus DSM
8271]
gi|324965619|gb|ADY56398.1| (p)ppGpp synthetase I, SpoT/RelA [Syntrophobotulus glycolicus DSM
8271]
Length = 718
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 123/429 (28%), Positives = 194/429 (45%), Gaps = 99/429 (23%)
Query: 99 FNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILH 158
+N +++ A +A+ AH GQ R +G+ Y+ H + ILA L T++A LH
Sbjct: 17 YNLAKIKAAYRYAEEAHRGQLRVSGEDYIQHPLEVALILAELEMDDS-----TIIAAFLH 71
Query: 159 DVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-ELADR 217
DV +D L I + FG+EV LV GV++L G L ++ ++ +
Sbjct: 72 DVAEDTERKLEDIRKVFGEEVEGLVDGVTKL-----------------GKLEYKSKMEVQ 114
Query: 218 LHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRA 277
+ N+R ++ A+A++ +I LA RL + L F Q Q +++
Sbjct: 115 VENLRKMFL-------AMAKDIRVILIKLADRL------HNMRTLRFKTEQKQ--KEIAQ 159
Query: 278 DLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFD 336
+ +++P NR+G R + +D SF H DL+E +
Sbjct: 160 ETIEIYAPLANRLGIFRI------------KWELEDLSFRYL--HPQEYYDLVEGIA--- 202
Query: 337 ILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGME 396
L + ++ KV++ L + G+E
Sbjct: 203 --------------LKRKEREEQINKVIEHLKARLGEV-------------------GIE 229
Query: 397 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 456
++ R K YSI+ KM ++ + ++YD A+RV+V + CY L ++H
Sbjct: 230 ADIAGRPKHFYSIYKKMITQNKDLSEIYDLTAIRVIV---------ETVNDCYGALGVIH 280
Query: 457 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 516
LW PI G F DYI PKP+ YQSLHT + G G E+QIRT +MH AE+G+AAHW Y
Sbjct: 281 TLWKPIPGRFKDYIAMPKPNMYQSLHTTLIGTLGEPFEIQIRTWEMHRTAEYGIAAHWKY 340
Query: 517 KETGNKLQS 525
KE G K++S
Sbjct: 341 KE-GKKVES 348
>gi|198282856|ref|YP_002219177.1| (p)ppGpp synthetase I SpoT/RelA [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|198247377|gb|ACH82970.1| (p)ppGpp synthetase I, SpoT/RelA [Acidithiobacillus ferrooxidans
ATCC 53993]
Length = 759
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 126/420 (30%), Positives = 189/420 (45%), Gaps = 94/420 (22%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
+ + A A AH Q R++G+PY+ H + ILA L + + T+ A +LHDV++
Sbjct: 57 RARDAYELAANAHGAQTRRSGEPYIHHPVAVACILAEL-----QLDIFTIQAALLHDVIE 111
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMR 222
D S +I E FG EVA++V GVS+L + R + N R
Sbjct: 112 DCNISKENITERFGPEVAEMVDGVSKLGQVRFETREEAQAE----------------NFR 155
Query: 223 TIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
++ A++++ ++ LA RL MR +
Sbjct: 156 KMFL-------AMSRDIRVVLIKLADRL----------------------HNMRT--MGV 184
Query: 283 WSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
+P R SR I + P+ +R + +++ LE + F L +R
Sbjct: 185 MTPEKRRRISRETLDIYA--PIAQRLG------------IHAIRIELEELA-FSHLYPKR 229
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
T L++ K++ +K V + E ALE LL G +S R
Sbjct: 230 WHT--LNEAVKAARGNRKEAVQK-----------IEHALEDRLLQE-----GFAAQVSGR 271
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K +YSI+ KM++K + ++D A R++V D + CY +L +VH L+ PI
Sbjct: 272 EKHVYSIYRKMQKKGMPFGDIHDLHAFRIIVAD---------VDTCYRVLGLVHSLYRPI 322
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
G F DYI PK +GYQSLHT + GP G +EVQIRT+ MH AE G+AAHWLYK N
Sbjct: 323 PGRFKDYIAIPKSNGYQSLHTVLLGPFGHPVEVQIRTEDMHRVAEAGVAAHWLYKTGSNN 382
>gi|342218775|ref|ZP_08711379.1| GTP diphosphokinase [Megasphaera sp. UPII 135-E]
gi|341588903|gb|EGS32275.1| GTP diphosphokinase [Megasphaera sp. UPII 135-E]
Length = 737
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 128/426 (30%), Positives = 196/426 (46%), Gaps = 102/426 (23%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P +++ + KA A AH Q R +G+ Y+ H + +ILA + K T+ A +
Sbjct: 27 PDLSEDILTKAFILAADAHKTQRRVSGELYIVHPLAVAQILADM-----KIDATTITASL 81
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELAD 216
LHDVV+D +L IEE FG EVA LV GV++L+ ++ + +++N
Sbjct: 82 LHDVVEDTKYTLEEIEERFGKEVAFLVDGVTKLNRLDYRTKEDQQLN------------- 128
Query: 217 RLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 276
++R ++ A+A++ ++ LA RL + R MR
Sbjct: 129 ---SLRKMFL-------AMAKDIRVVVIKLADRLH----------------NMRTLRYMR 162
Query: 277 ADLASMWSPRNRVGYSRRIT--TIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVP 334
+D +RI+ T+ PL R + ++K LE
Sbjct: 163 SD------------KQKRISQETLEIFAPLAHRLG------------IFNIKWELED--- 195
Query: 335 FDILSDRRKRTKFLHDLAKSSEAQKKAK--VVQDAGIALTSLVACEEALEKELLISTSYI 392
LS R +DL + ++ A+ +V DA L +A S+I
Sbjct: 196 ---LSFRYLEPDKYYDLVDQMKQKRHAREEIVNDAITVLQKALA------------DSHI 240
Query: 393 PGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLL 452
++ R K LYSI+ KM++ + + +VYD A+R++V +Q CY +L
Sbjct: 241 S---FEINGRPKHLYSIYKKMKKDNRDLSQVYDLYAIRIIVD---------TVQDCYGVL 288
Query: 453 DIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAA 512
IVH LW P+ F DYI PKP+ YQSLHT V G G +E+QIRT +MH AE+G+AA
Sbjct: 289 GIVHSLWKPLPYRFKDYIAMPKPNNYQSLHTTVIGSQGQPVEIQIRTWEMHHVAEYGVAA 348
Query: 513 HWLYKE 518
HW YKE
Sbjct: 349 HWRYKE 354
>gi|218666350|ref|YP_002425057.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Acidithiobacillus ferrooxidans ATCC 23270]
gi|218518563|gb|ACK79149.1| guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase
[Acidithiobacillus ferrooxidans ATCC 23270]
Length = 734
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 128/420 (30%), Positives = 191/420 (45%), Gaps = 94/420 (22%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
+ + A A AH Q R++G+PY+ H + ILA L + + T+ A +LHDV++
Sbjct: 32 RARDAYELAANAHGAQTRRSGEPYIHHPVAVACILAEL-----QLDIFTIQAALLHDVIE 86
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMR 222
D S +I E FG EVA++V GVS+L + R EE + N R
Sbjct: 87 DCNISKENITERFGPEVAEMVDGVSKLGQVRFETR--------------EEA--QAENFR 130
Query: 223 TIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
++ A++++ ++ LA RL MR +
Sbjct: 131 KMFL-------AMSRDIRVVLIKLADRL----------------------HNMRT--MGV 159
Query: 283 WSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
+P R SR I + P+ +R + +++ LE + F L +R
Sbjct: 160 MTPEKRRRISRETLDIYA--PIAQRLG------------IHAIRIELEELA-FSHLYPKR 204
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
T L++ K++ +K V + E ALE LL G +S R
Sbjct: 205 WHT--LNEAVKAARGNRKEAVQK-----------IEHALEDRLLQE-----GFAAQVSGR 246
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K +YSI+ KM++K + ++D A R++V D + CY +L +VH L+ PI
Sbjct: 247 EKHVYSIYRKMQKKGMPFGDIHDLHAFRIIVAD---------VDTCYRVLGLVHSLYRPI 297
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
G F DYI PK +GYQSLHT + GP G +EVQIRT+ MH AE G+AAHWLYK N
Sbjct: 298 PGRFKDYIAIPKSNGYQSLHTVLLGPFGHPVEVQIRTEDMHRVAEAGVAAHWLYKTGSNN 357
>gi|94499848|ref|ZP_01306384.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Bermanella marisrubri]
gi|94428049|gb|EAT13023.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Oceanobacter sp. RED65]
Length = 710
Score = 157 bits (396), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 116/418 (27%), Positives = 195/418 (46%), Gaps = 98/418 (23%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
QV +A +A++AH GQFR++GDPY+ H + IL+ + S +++A +LHDV++
Sbjct: 22 QVCRAYYYAEQAHEGQFRRSGDPYIVHPLAVANILSEMHMDS-----QSLMAAMLHDVIE 76
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMR 222
D +++++FG+ V++LV GVS+L++I + E+ A M
Sbjct: 77 DTAVPKDALKDQFGETVSELVDGVSKLTHI-------------KFESQEEKQAGNFQKM- 122
Query: 223 TIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLAS 281
A A+A++ +I LA RL + L A + P+ R++ +
Sbjct: 123 ---------AMAMAKDIRVILVKLADRLHNMRTLSA---------MPPEKKRRIAGETLE 164
Query: 282 MWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSD 340
+++P NR+G S + R +D F +H +
Sbjct: 165 IYAPIANRLGIS------------NIRIELEDLCFNA--KHPM----------------- 193
Query: 341 RRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLS 400
R+ + KS+ + +++V+ AL + + E G++ +
Sbjct: 194 ---RSNMIKKAVKSARGNR-SELVEKINQALKTRLKEE---------------GLKTRVM 234
Query: 401 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 460
R K LYSI+ KM+ + ++ D R++V + + CY L IVH +
Sbjct: 235 GREKHLYSIYRKMKEQKKSFKQIMDVYGFRIIVDN---------VDSCYRALGIVHNFYK 285
Query: 461 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
P+ G F DYI PK +GYQSLHT V G G +E+QIRT++M A +G+AAHWLYK+
Sbjct: 286 PVPGRFKDYIAIPKSNGYQSLHTTVVGVGGVHIEIQIRTEEMEAMAHNGIAAHWLYKD 343
>gi|352684036|ref|YP_004896020.1| GTP pyrophosphokinase [Acidaminococcus intestini RyC-MR95]
gi|350278690|gb|AEQ21880.1| GTP pyrophosphokinase [Acidaminococcus intestini RyC-MR95]
Length = 740
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 130/436 (29%), Positives = 200/436 (45%), Gaps = 102/436 (23%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E V++A FA H Q R +G+PY+ H + ILA L T+ A LHDVV
Sbjct: 28 EFVREAYNFAAEQHASQKRASGEPYIIHPLGVASILAQLHMDD-----TTLAAAFLHDVV 82
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNM 221
+D +L + + FG EVA LV GV++L I + R +++ N
Sbjct: 83 EDTDVTLDQLTDIFGLEVAGLVDGVTKLGKIEYISREEQQVE----------------NY 126
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLAS 281
R ++ A+A++ ++ LA RL R M+
Sbjct: 127 RKMFL-------AMAKDIRVVLIKLADRL-------------------HNMRTMK----- 155
Query: 282 MWSPRNRVGYSRRIT--TIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILS 339
+ P N+ +RI+ T+ PL R + ++K LE LS
Sbjct: 156 -YMPPNK---QKRISSETLEIYAPLAHRLG------------IYAIKWELED------LS 193
Query: 340 DRRKRTKFLHDLAKSSEAQKKAK--VVQDAGIALTSLVACEEALEKELLISTSYIPGMEV 397
R + ++L + + ++ + +VQ+A L+ L C ++ G++
Sbjct: 194 FRYMEPQHYYELVEQVKVKRHEREAMVQEAMDELSHL--CSDS-------------GIKC 238
Query: 398 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 457
+ R KS YSI+ KM++ + I+++YD A+RV+V +++ CY +L IVH
Sbjct: 239 EIQGRPKSFYSIYKKMQKDNKSINEIYDLLAVRVLVD---------SVKDCYGVLGIVHG 289
Query: 458 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 517
W PI G F DYI PK +GYQSLHT V G LE+QIRT +MH +E+G+AAHW YK
Sbjct: 290 KWRPIPGRFKDYIAVPKSNGYQSLHTTVVSSSGQPLEIQIRTFEMHRISEYGVAAHWRYK 349
Query: 518 ETGNKLQSISSMDESD 533
E+G SS +D
Sbjct: 350 ESGGSNMPSSSDKSAD 365
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 19/121 (15%)
Query: 700 RRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSV---VP 756
+ S S P+S + S + K+ LR +L W +R D+V V
Sbjct: 349 KESGGSNMPSSSDKSADEKMAWLRQLLDWHRDMRDPHEF------------VDTVKMDVF 396
Query: 757 GEVVIVCWPNGEIMRLRSGSTAADAAMKV--GLEGKLV--LVNGQLVLPNTELKDGDIVE 812
+ V V P G+++ L GS D A ++ G+ + V +NG++V + +LK+GDIVE
Sbjct: 397 SDEVFVFTPPGDVIDLPFGSVPIDFAYRIHTGVGNRCVGAKINGKIVPLDYKLKNGDIVE 456
Query: 813 V 813
+
Sbjct: 457 I 457
>gi|227824350|ref|ZP_03989182.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|226904849|gb|EEH90767.1| conserved hypothetical protein [Acidaminococcus sp. D21]
Length = 725
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 135/453 (29%), Positives = 208/453 (45%), Gaps = 103/453 (22%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E V++A FA H Q R +G+PY+ H + ILA L T+ A LHDVV
Sbjct: 13 EFVREAYNFAAEQHASQKRASGEPYIIHPLGVASILAQLHMDD-----TTLAAAFLHDVV 67
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNM 221
+D +L + + FG EVA LV GV++L I + R +++ N
Sbjct: 68 EDTDVTLDQLTDIFGLEVAGLVDGVTKLGKIEYISREEQQVE----------------NY 111
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLAS 281
R ++ A+A++ ++ LA RL R M+
Sbjct: 112 RKMFL-------AMAKDIRVVLIKLADRL-------------------HNMRTMK----- 140
Query: 282 MWSPRNRVGYSRRIT--TIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILS 339
+ P N+ +RI+ T+ PL R + ++K LE LS
Sbjct: 141 -YMPPNK---QKRISSETLEIYAPLAHRLG------------IYAIKWELED------LS 178
Query: 340 DRRKRTKFLHDLAKSSEAQKKAK--VVQDAGIALTSLVACEEALEKELLISTSYIPGMEV 397
R + ++L + + ++ + +VQ+A L+ L C ++ G++
Sbjct: 179 FRYMEPQHYYELVEQVKVKRHEREAMVQEAMDELSHL--CSDS-------------GIKC 223
Query: 398 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 457
+ R KS YSI+ KM++ + I+++YD A+RV+V +++ CY +L IVH
Sbjct: 224 EIQGRPKSFYSIYKKMQKDNKSINEIYDLLAVRVLVD---------SVKDCYGVLGIVHG 274
Query: 458 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 517
W PI G F DYI PK +GYQSLHT V G LE+QIRT +MH +E+G+AAHW YK
Sbjct: 275 KWRPIPGRFKDYIAVPKSNGYQSLHTTVVSSSGQPLEIQIRTFEMHRISEYGVAAHWRYK 334
Query: 518 ETGNKLQSISSMDESDIEASSSLSKDTDDHNPL 550
E+G SS D+S E + L + D H +
Sbjct: 335 ESGGS-NMPSSSDKSADEKMAWLRQLLDWHRDM 366
Score = 43.1 bits (100), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 19/121 (15%)
Query: 700 RRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSV---VP 756
+ S S P+S + S + K+ LR +L W +R D+V V
Sbjct: 334 KESGGSNMPSSSDKSADEKMAWLRQLLDWHRDMRDPHEF------------VDTVKMDVF 381
Query: 757 GEVVIVCWPNGEIMRLRSGSTAADAAMKV--GLEGKLV--LVNGQLVLPNTELKDGDIVE 812
+ V V P G+++ L GS D A ++ G+ + V +NG++V + +LK+GDIVE
Sbjct: 382 SDEVFVFTPQGDVIDLPFGSVPIDFAYRIHTGVGNRCVGAKINGKIVPLDYKLKNGDIVE 441
Query: 813 V 813
+
Sbjct: 442 I 442
>gi|229816634|ref|ZP_04446923.1| hypothetical protein COLINT_03683 [Collinsella intestinalis DSM
13280]
gi|229807762|gb|EEP43575.1| hypothetical protein COLINT_03683 [Collinsella intestinalis DSM
13280]
Length = 797
Score = 156 bits (394), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 131/418 (31%), Positives = 195/418 (46%), Gaps = 95/418 (22%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V++A FA H Q R++G+ Y+ H + IL+ L K D V A +LHD V+D
Sbjct: 67 VEQAYCFAAEKHCAQKRRSGEAYINHPVEVAIILSEL-----KMDCDVVCAALLHDTVED 121
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL-GHEELADRLHNMR 222
SL + FG VA LV GV++L+ N++ T+ G + L N+R
Sbjct: 122 TTTSLADVTAFFGATVADLVDGVTKLT------------NIDVDTMDGKQAL-----NLR 164
Query: 223 TIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
++ A++++ ++ LA RL MR LA++
Sbjct: 165 KMFL-------AMSRDIRVVIVKLADRL----------------------HNMRT-LAAL 194
Query: 283 WSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
P +R + R T V +P D S S+K LE + F + +
Sbjct: 195 --PADRRLFKARETMDVYAPLADRLGMS-------------SIKWELEDLSFFYLEPESY 239
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
+R + +++S EA+++ L +AL+ EL + I G ++T R
Sbjct: 240 QRIARM--VSESREARERF------------LAETIKALDDEL--KRAGIEGYQIT--GR 281
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K +SI+ KM+RK ++YD ALRV+ ++ CYS L H LW P+
Sbjct: 282 SKHYWSIYQKMKRKGKEFSEIYDLVALRVIT---------KSVVDCYSTLGAAHSLWTPV 332
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 520
G F DYI PK + YQSLHT V GP LE+QIRT +MHE AE+G+AAHWLYK +G
Sbjct: 333 PGRFKDYINMPKANNYQSLHTTVIGPTARPLEIQIRTYEMHEQAEYGIAAHWLYKRSG 390
>gi|359687928|ref|ZP_09257929.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Leptospira
licerasiae serovar Varillal str. MMD0835]
gi|418750353|ref|ZP_13306639.1| putative GTP diphosphokinase [Leptospira licerasiae str. MMD4847]
gi|418758451|ref|ZP_13314633.1| GTP diphosphokinase [Leptospira licerasiae serovar Varillal str.
VAR 010]
gi|384114353|gb|EIE00616.1| GTP diphosphokinase [Leptospira licerasiae serovar Varillal str.
VAR 010]
gi|404272956|gb|EJZ40276.1| putative GTP diphosphokinase [Leptospira licerasiae str. MMD4847]
Length = 677
Score = 156 bits (394), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 125/422 (29%), Positives = 194/422 (45%), Gaps = 104/422 (24%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVV--AGILHD 159
E ++KA ++ +H GQFR +G+PY+ H + G IL L +D V AGILHD
Sbjct: 27 ELIEKAYKVSEDSHQGQFRLSGEPYIVHPLQVGFILYEL-------GLDEKVISAGILHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLH 219
V++D + + +FG E+ +LV G ++ I+Q+ + + +
Sbjct: 80 VIEDTKYTKEDMVRDFGTEITQLVEG---VTKISQIKSQSKETEAAE------------- 123
Query: 220 NMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 279
N+R I A Q+ +I LA + + L F P+ R++ +
Sbjct: 124 NIRKIII-------ATIQDIRVILIKLADKT------HNMRTLSFQ--PPEKQRRIANET 168
Query: 280 ASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDIL 338
S+++P R+G I ++ S ++DL V+ +
Sbjct: 169 LSLYAPIAGRLG----IYSVKSE-----------------------LEDLAFQVIFPEEY 201
Query: 339 SDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVT 398
D +KR AK SE E+ +EK LI + +++
Sbjct: 202 QDIKKRIS-----AKKSER--------------------EDYIEKLQLILKQRLAEIQIN 236
Query: 399 --LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 456
+ R K +SI+ KM+ K+ +++D RA+R+V + I+ CY +L IVH
Sbjct: 237 ANVEGRAKHFFSIYRKMKTKEKTFDEIFDLRAIRIVTDE---------IKDCYGVLGIVH 287
Query: 457 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 516
LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT +M+ AE G+AAHW+Y
Sbjct: 288 TLWSPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTAEMNAIAEFGIAAHWVY 347
Query: 517 KE 518
KE
Sbjct: 348 KE 349
Score = 43.9 bits (102), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 760 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 815
V V P GEI++L G+T D A + VGL K +NG+++ TEL+ GD VEV V
Sbjct: 393 VFVFTPKGEIIQLPKGATVLDFAFRIHTDVGLHCKGAKINGRMIPLRTELRSGDQVEVVV 452
>gi|384107667|ref|ZP_10008565.1| Guanosine polyphosphate pyrophosphohydrolase/synthetase [Treponema
sp. JC4]
gi|383870523|gb|EID86125.1| Guanosine polyphosphate pyrophosphohydrolase/synthetase [Treponema
sp. JC4]
Length = 470
Score = 155 bits (393), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 131/452 (28%), Positives = 202/452 (44%), Gaps = 116/452 (25%)
Query: 93 VTGYPIFNDE---QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAV 149
++ Y FNDE ++ KA F + R G PY H + ++LA K
Sbjct: 22 LSQYDYFNDEDRERISKAWYFMTEKCGDKKRSCGTPYYLHPLRLAKVLA-----DSKLDA 76
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D V+ GILH + D S I + FG+++ KL+ G +++ Y+ +N TL
Sbjct: 77 DAVITGILHTIRDFGV-SPEEIGKTFGEQIEKLLQGTNKIMYLP----------INSKTL 125
Query: 210 GHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLG-LWALKAELEDLCFAVLQ 268
AD + M I+A+ + +I +A RL + +K+ L+
Sbjct: 126 RQ---ADAIRKM--IFAM--------VDDVRIILVKIADRLDRIRNIKS---------LE 163
Query: 269 PQIFRKMRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKD 327
P+ R + ++ +W+P +R+G +TA ++ + +
Sbjct: 164 PERQRILAEEIIDIWAPLADRLGM---------------QTAKNEFEDLSLRYTNPKAYN 208
Query: 328 LLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLI 387
+EA+V + +R +FL+ K K+ Q A A
Sbjct: 209 QIEAIVA----QSKEERAEFLNSAVK--------KIQQKAEKA----------------- 239
Query: 388 STSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQC 447
G+ VT++SR K YSI+ KMR+++ ++YD ALR++
Sbjct: 240 ------GISVTITSRAKHFYSIYQKMRKRNKSASELYDLLALRILCNSNAE--------- 284
Query: 448 CYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAE 507
CY L+ IVH LW+P+DG F DYI PK +GYQSLHT V +G LE+QIRT +MH AE
Sbjct: 285 CYQLVGIVHSLWLPMDGRFKDYIAVPKANGYQSLHTTVIC-EGKPLEIQIRTYEMHNMAE 343
Query: 508 HGLAAHWLYK-------------ETGNKLQSI 526
HG+A+HWLYK E NKLQS+
Sbjct: 344 HGIASHWLYKKGTNHDLVEADKLEIFNKLQSL 375
>gi|270307456|ref|YP_003329514.1| relA/spoT protein, GTP pyrophosphokinase [Dehalococcoides sp. VS]
gi|270153348|gb|ACZ61186.1| relA/spoT protein, GTP pyrophosphokinase [Dehalococcoides sp. VS]
Length = 728
Score = 155 bits (392), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 135/414 (32%), Positives = 191/414 (46%), Gaps = 92/414 (22%)
Query: 115 HHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEE 174
H GQ RK+G+P++ H ++ LA L + V T+ A +LHDV +DA SL I+++
Sbjct: 33 HTGQMRKSGEPFIEHPLNVALTLADL-----QLDVSTLSAALLHDVPEDANISLEQIDKK 87
Query: 175 FGDEVAKL---VAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAK 231
FG +VAKL V +S+L+ + + RR N +L E N+R +
Sbjct: 88 FGPDVAKLVDGVTKLSKLA-LGPAIEDARRPGGN-ASLRQAE------NLRKMLV----- 134
Query: 232 ARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGY 291
A++++ +++ LA R F MR A S R
Sbjct: 135 --AMSEDLRVVFIKLADR----------------------FHNMRTLQA--LSAEKRRSI 168
Query: 292 SRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDL 351
++ I + PL R + +K LE + F L R R + +L
Sbjct: 169 AKETMEIYA--PLAHRLG------------IWELKWQLEDLA-FRYLDPRHYRQ--VANL 211
Query: 352 AKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFS 411
S AQ+K + + I + EK G++V LS R K LYSI+
Sbjct: 212 VDSKLAQRKNYIEHVSAI-------LQSEFEKN---------GLKVELSGRPKHLYSIYQ 255
Query: 412 KMRR---KDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDD 468
KM + + +YD ALRV+V D I CY + IVH LW PI G FDD
Sbjct: 256 KMEKYASQGKQFEDIYDVLALRVLVND---------IPDCYHAIGIVHSLWHPIPGAFDD 306
Query: 469 YIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
YI NPKP+GYQSLHTAV + LEVQ+RT +MH AE+G+AAHW YK G +
Sbjct: 307 YIANPKPNGYQSLHTAVMSLGTTPLEVQVRTYQMHHIAEYGVAAHWRYKTAGKE 360
>gi|255080932|ref|XP_002504032.1| predicted protein [Micromonas sp. RCC299]
gi|226519299|gb|ACO65290.1| predicted protein [Micromonas sp. RCC299]
Length = 1340
Score = 155 bits (392), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 126/381 (33%), Positives = 189/381 (49%), Gaps = 44/381 (11%)
Query: 325 MKDLLEAVVPFDIL--SDRRKRTKFLHDLAKSSEAQKKAK-------VVQDAGI--ALTS 373
+K LL V PFD+L S+R RT A + + A V A + +L S
Sbjct: 582 LKALLACVPPFDLLQASERNSRTAAAAAAAMMAADEATAATAADGRPTVGGASLDASLRS 641
Query: 374 LVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVV 433
L C+ + L + S PG+ V ++ RLKS +S KMRRK++ +V DARALR+V+
Sbjct: 642 LRQCQATTMRSLQLD-SLAPGLRVEITGRLKSAHSTHLKMRRKNIDFGQVCDARALRIVI 700
Query: 434 GDKNGTLHGPA--IQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGS 491
G+ G G ++ CY++++ +H+L+ + GE+DDY+ N K SGYQSLHTAV GPDG+
Sbjct: 701 GEP-GEAPGTKDEVEACYAVVNAIHKLYRAVPGEYDDYVANKKRSGYQSLHTAVTGPDGA 759
Query: 492 ALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDI-----------EASSSL 540
LE Q+RT+ MHE AE G AAHWLYK+ N ++ + DES I +
Sbjct: 760 LLEFQVRTRAMHEAAEFGDAAHWLYKDFINAVKRRPN-DESAIGGDGGGGGPEDVDVVAA 818
Query: 541 SKDTDDHNPL-DTDLFQKYSSLKMGHPVIRV------EGSNLLAAVIIRVEKGGRELLVA 593
+P +T++ + Y +G PV V G L+A ++ +G R +V
Sbjct: 819 GVARARASPTAETNVDRSY----VGQPVQIVWDVGTSGGGGRLSAGVVCFAEGSRIHVVE 874
Query: 594 VSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEW----WCQPGHGDWCTCLEKYTLC 649
G + V + + W A L++ A D +P + ++ LC
Sbjct: 875 PRRGDVLAPGVGSTGLA-ETAEWVAMG-LHRDALDRAVRANRVEPRQNGPGYLVLEFALC 932
Query: 650 RDGMYHKQDQFGRLLPTFIQI 670
DG +HK D F R L T ++
Sbjct: 933 SDGRWHKVDAFDRKLATTAEL 953
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 80/124 (64%), Gaps = 5/124 (4%)
Query: 86 FIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSG 145
++ GVD + YPIF ++ +A FA+R HHGQ+R++G+PY+THC+ RILA L+P
Sbjct: 159 IVLCGVDCSAYPIFRHPKIVRAALFAERWHHGQYRRSGEPYVTHCVEAARILAALLPQRA 218
Query: 146 -----KRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHR 200
++ VD V A ILHDVVDD + + +FG VAKLV VS L + Q+LRR++
Sbjct: 219 AERGERKYVDAVAACILHDVVDDTECDVEDVRAQFGSRVAKLVQDVSTLGKLPQILRRYQ 278
Query: 201 RINV 204
R +V
Sbjct: 279 RRSV 282
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 48/61 (78%)
Query: 213 ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 272
++ADRLHNMRT+YA+ AK++ VA ETL +WCS A +LG++ KAE+EDL FAV+ P F
Sbjct: 377 KIADRLHNMRTMYAVNSAKSKFVANETLQVWCSFAEQLGMFGAKAEMEDLSFAVVNPDAF 436
Query: 273 R 273
R
Sbjct: 437 R 437
>gi|428212424|ref|YP_007085568.1| RelA/SpoT family (p)ppGpp synthetase [Oscillatoria acuminata PCC
6304]
gi|428000805|gb|AFY81648.1| (p)ppGpp synthetase, RelA/SpoT family [Oscillatoria acuminata PCC
6304]
Length = 754
Score = 155 bits (392), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 137/463 (29%), Positives = 205/463 (44%), Gaps = 108/463 (23%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A FA + H Q RK+G+PY+ H I +L L SS + AG LHDVV+D
Sbjct: 48 RAFEFAYQLHECQRRKSGEPYIIHPIAVAGLLRELGGSSA-----MIAAGFLHDVVEDTE 102
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTIY 225
+ I+E FG+EV +LV GV++LS + N + T E N R ++
Sbjct: 103 VTPDEIQERFGEEVRQLVEGVTKLS----------KFNFSSKTERQAE------NFRRMF 146
Query: 226 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP 285
A+A++ +I LA RL L D V + +I + R A +
Sbjct: 147 L-------AMAKDIRVIVVKLADRLHNMRTLESLAD----VKRQRIALETREIFAPL--- 192
Query: 286 RNRVGYSRRITTIVSSPPLDERTASDDESFTTFD-EHVLSMKDLLEAVVPFDILSDRRKR 344
NR+G R + +D SF + + M+DL+ KR
Sbjct: 193 ANRLGIGRF------------KWELEDLSFKYLEPDSYRQMQDLVA-----------EKR 229
Query: 345 TKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLK 404
+ L K +E + +++ GI T + S R K
Sbjct: 230 IDRENRLNKVTETLRLR--LEELGIGCTEV-------------------------SGRPK 262
Query: 405 SLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDG 464
LY I+ KM+R++ ++YD A+R++V + CY L I H + P+ G
Sbjct: 263 HLYGIYQKMQRQNKKFEEIYDVAAVRILVQKS---------EECYRALAIAHDAFRPLPG 313
Query: 465 EFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQ 524
F DYI PKP+ YQSLHT V GP G +EVQIRT +MH AE+G+AAHW YKE G+
Sbjct: 314 RFKDYIGLPKPNRYQSLHTVVLGPTGRPIEVQIRTVEMHHVAEYGIAAHWKYKEAGSSYS 373
Query: 525 SISSMDE------------SDIEASSSLSKDTDDHNPLDTDLF 555
+++ DE SD++ + ++ D N D D++
Sbjct: 374 KLNNDDEKFTWLRQLLEWQSDLKDAQEYLENVKD-NLFDEDVY 415
>gi|328948969|ref|YP_004366306.1| (p)ppGpp synthetase I SpoT/RelA [Treponema succinifaciens DSM 2489]
gi|328449293|gb|AEB15009.1| (p)ppGpp synthetase I, SpoT/RelA [Treponema succinifaciens DSM
2489]
Length = 636
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 118/403 (29%), Positives = 182/403 (45%), Gaps = 97/403 (24%)
Query: 120 RKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEV 179
RK G PY H + ILA DT++AG H+++D + L IE++FG E+
Sbjct: 52 RKCGKPYYLHPLRVATILA-----EKNLGADTIIAGFFHNILDVDNDCLPEIEKKFGKEI 106
Query: 180 AKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQET 239
A + G ++++ + +N +L AD + M ++A+ +
Sbjct: 107 AVICNGTAKIT----------GLKINSTSLHQ---ADSIRKM--LFAM--------VDDI 143
Query: 240 LLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP-RNRVGYSRRITTI 298
+I LA RL + +L F Q Q R + ++ +W P +R+G S
Sbjct: 144 RVILVKLADRLD------RMRNLKFVSAQAQ--RAVAKEVIDIWCPLASRLGMS------ 189
Query: 299 VSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQ 358
D ++ +D S + V KS AQ
Sbjct: 190 ------DVKSEMEDLSLKYSNPEVFQQ--------------------------IKSIVAQ 217
Query: 359 KKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDV 418
KKA+ + A+ + E G+ V ++SR K YSI+ KMR+++
Sbjct: 218 KKAERSEYLNNAVKKIYTATEK------------AGITVNITSRAKHFYSIYQKMRKRNK 265
Query: 419 GIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGY 478
++YD ALR++ ++ CY+L+ IVH LW P++G F DYI PK +GY
Sbjct: 266 EPGELYDLLALRIICNTESE---------CYTLIGIVHGLWKPMEGRFKDYIAMPKANGY 316
Query: 479 QSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
QSLHT V +G LE+QIRTQ+MH AEHG+A+HWLYK+ N
Sbjct: 317 QSLHTTVIC-EGKPLEIQIRTQEMHSIAEHGVASHWLYKKGTN 358
>gi|303271107|ref|XP_003054915.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462889|gb|EEH60167.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 328
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 114/177 (64%), Gaps = 12/177 (6%)
Query: 348 LHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLY 407
+ DLA + + + + +A +L +L +C +A + L + + PG+ V ++ RLKS Y
Sbjct: 158 MEDLAFAVKDPDAFRAIINARASLNALASCRDACMRSLQLD-AIAPGLRVDITGRLKSAY 216
Query: 408 SIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPA------IQCCYSLLDIVHRLWIP 461
S KM RK + V DARALRVV+G+ GPA ++ C+ LL+ +H+L+ P
Sbjct: 217 STHLKMARKKIPFGAVCDARALRVVIGEP-----GPAPGTKDEVEACFVLLEAIHKLYRP 271
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
+ GE+DDY+ N K SGYQSLHTAV GPDG+ LEVQ+RT+ MH+ AE G AAHW+YK+
Sbjct: 272 VPGEYDDYVTNVKASGYQSLHTAVTGPDGALLEVQVRTRAMHDAAEFGDAAHWIYKD 328
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/200 (43%), Positives = 115/200 (57%), Gaps = 16/200 (8%)
Query: 115 HHGQFRKTGDPYLTHCIHTGRILAMLIP---SSGKRAVDTVVAGILHDVVDDACESLGSI 171
HHGQFR +G+PY+ HC+ RI+A L+P + K+ VD VVA ILHDVVDD ++ +
Sbjct: 1 HHGQFRNSGEPYVVHCVEAARIMAALLPPDVNGKKKYVDAVVACILHDVVDDTECAIEDV 60
Query: 172 EEEFGDEVAKLVAGVSRLSYINQLLRRHRR----------INVNQGTLGHEELADRLHNM 221
E EFG VAKLV VS+L R V+ + ++ADRLHNM
Sbjct: 61 EAEFGSTVAKLVTDVSKLGNDEDRGRMDTEELVKLKKLLLFMVDDPRVFLIKVADRLHNM 120
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM---RAD 278
RT+YA+ P KAR VA ETL +WC ++ LGL AE+EDL FAV P FR + RA
Sbjct: 121 RTMYAVKPEKARFVANETLQVWCPVSEALGLLGANAEMEDLAFAVKDPDAFRAIINARAS 180
Query: 279 LASMWSPRNRVGYSRRITTI 298
L ++ S R+ S ++ I
Sbjct: 181 LNALASCRDACMRSLQLDAI 200
>gi|373451938|ref|ZP_09543856.1| RelA/SpoT family protein [Eubacterium sp. 3_1_31]
gi|371967370|gb|EHO84841.1| RelA/SpoT family protein [Eubacterium sp. 3_1_31]
Length = 738
Score = 154 bits (388), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 136/471 (28%), Positives = 214/471 (45%), Gaps = 113/471 (23%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
N + + +A A++ H GQ+RK+G+PY+ H I G ILAML +G + T+ AG+LHD
Sbjct: 30 NIDLITRAFLCAEKNHAGQYRKSGEPYIIHAIQVGYILAML--RTGPK---TIAAGLLHD 84
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRL- 218
VV+D L I E FG+EVA LV V+++ G L ++ + L
Sbjct: 85 VVEDCDVCLEQISEMFGEEVASLVESVTKI-----------------GALKFKDEKEYLA 127
Query: 219 HNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRAD 278
N R I+ A+A++ +I L+ RL + L + + PQ +K+ ++
Sbjct: 128 SNHRKIFI-------AMAKDVRVILIKLSDRLH------NMRTLQY--MTPQKQQKIASE 172
Query: 279 LASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDI 337
+++P +R+G S +K+ LE + F
Sbjct: 173 TLEVYAPIAHRLGIS-------------------------------DIKNELEDLC-FQY 200
Query: 338 LSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEV 397
L+ + +++AK E +K + Q + S++ +L E I +
Sbjct: 201 LNKEK-----YYEIAKLVEKRKTERDAQ-----VQSMIREISSLLDEHQI--------KY 242
Query: 398 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 457
+ R K LYSI+ KM K+ ++ D A+R++ CY +L +H
Sbjct: 243 RIFGRSKHLYSIYKKMITKNKRFEEILDLLAIRIITDTDTA---------CYEILGYIHA 293
Query: 458 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 517
+ PI G F DYI PK + YQSLHT + DG+ EVQIRT+ M E AE G+AAHW YK
Sbjct: 294 KYRPIPGRFKDYIAMPKVNMYQSLHTTIVAEDGNIFEVQIRTESMDEVAEQGIAAHWRYK 353
Query: 518 ETGNKLQSISSMDESDIEAS-------SSLSKDTDDH-----NPLDTDLFQ 556
E N + + + +IE S +S D +D N L D+F+
Sbjct: 354 ENLNGGREVH---QKEIEEQLHWFKDFSVMSDDVNDDAMEYMNLLQKDIFE 401
>gi|298491762|ref|YP_003721939.1| (p)ppGpp synthetase I ['Nostoc azollae' 0708]
gi|298233680|gb|ADI64816.1| (p)ppGpp synthetase I, SpoT/RelA ['Nostoc azollae' 0708]
Length = 758
Score = 153 bits (386), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 137/429 (31%), Positives = 194/429 (45%), Gaps = 100/429 (23%)
Query: 107 AIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACE 166
A FA + H GQ+RK+G+ Y+ H + +L L S + AG LHDVV+D
Sbjct: 47 AFQFAYQLHQGQYRKSGEAYIAHPVAVAGLLRDLGGSPA-----MIGAGFLHDVVEDTEV 101
Query: 167 SLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTIYA 226
++ IEE FG EV +LV GV++LS +IN T E N R ++
Sbjct: 102 TIEEIEEHFGAEVRQLVEGVTKLS----------KINFTSKTESQAE------NFRRMFL 145
Query: 227 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP- 285
A+AQ+ +I LA RL + L + + R+ + +++P
Sbjct: 146 -------AMAQDIRVIVVKLADRL------HNMRTLQY--MSEASRRRSAQETRDIFAPL 190
Query: 286 RNRVGYSRRITTIVSSPPLDERTAS--DDESFTTFDEHVLSMKDLLEAVVPFDILSDRRK 343
NR+G R L++ + ++F +HV K
Sbjct: 191 ANRLGIWR------VKWELEDLAFKYLEPDAFREIQQHV------------------SEK 226
Query: 344 RTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRL 403
RT LA+++E +K +Q AGI C + +S R
Sbjct: 227 RTAREEKLARATEVLRKR--MQQAGIQ------C-------------------LDVSGRP 259
Query: 404 KSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPID 463
K LYSI+ KM R+ H++YD ALR++V + CY L +VH + PI
Sbjct: 260 KHLYSIYQKMHRQHKEFHEIYDLAALRIIVQTN---------EECYRALAVVHDAFRPIP 310
Query: 464 GEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKL 523
G F DYI PKP+ YQSLHT V G G LEVQIRT +MH AE+G+AAHW YKETG
Sbjct: 311 GRFKDYIGLPKPNRYQSLHTGVIGLTGRPLEVQIRTMEMHHVAEYGIAAHWKYKETGGST 370
Query: 524 QS-ISSMDE 531
S ++ DE
Sbjct: 371 NSQLTGTDE 379
>gi|344200336|ref|YP_004784662.1| (p)ppGpp synthetase I SpoT/RelA [Acidithiobacillus ferrivorans SS3]
gi|343775780|gb|AEM48336.1| (p)ppGpp synthetase I, SpoT/RelA [Acidithiobacillus ferrivorans
SS3]
Length = 760
Score = 153 bits (386), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 125/415 (30%), Positives = 189/415 (45%), Gaps = 94/415 (22%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
+ ++A A AH Q R++G+PY+ H + ILA L + + T+ A +LHDV++
Sbjct: 57 RAREAYELAAIAHGAQTRRSGEPYIHHPVAVACILAEL-----QLDIFTIQAALLHDVIE 111
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMR 222
D S +I E FG EVA++V GVS+L + R + N R
Sbjct: 112 DCSISKENIVERFGPEVAEMVDGVSKLGQVRFETREEAQAE----------------NFR 155
Query: 223 TIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
++ A++++ ++ LA RL MR +
Sbjct: 156 KMFL-------AMSRDIRVVLIKLADRL----------------------HNMRT--MGV 184
Query: 283 WSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
+P R SR I + P+ +R + +++ LE + F L +R
Sbjct: 185 MTPEKRRRISRETLDIYA--PIAQRLG------------IHAIRIELEELA-FSHLYPKR 229
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
T L++ K+S +K V T A E+ L +E G + R
Sbjct: 230 WHT--LNEAIKASRGNRKEGV-------QTIQRALEDRLRQE---------GFVAQVCGR 271
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K +YSI+SKM++K + ++D A RV+V D + CY +L ++H L+ PI
Sbjct: 272 EKHVYSIYSKMQKKGMPFGAIHDLHAFRVIVAD---------VDTCYRVLGLIHSLYRPI 322
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 517
G F DYI PK +GYQSLHT + GP G +EVQIRT+ MH AE G+AAHWLYK
Sbjct: 323 PGRFKDYIAIPKSNGYQSLHTVLLGPFGHPVEVQIRTEDMHRVAEAGVAAHWLYK 377
>gi|308233820|ref|ZP_07664557.1| (p)ppGpp synthetase I, SpoT/RelA [Atopobium vaginae DSM 15829]
gi|328944552|ref|ZP_08242013.1| GTP diphosphokinase [Atopobium vaginae DSM 15829]
gi|327490953|gb|EGF22731.1| GTP diphosphokinase [Atopobium vaginae DSM 15829]
Length = 796
Score = 153 bits (386), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 130/438 (29%), Positives = 201/438 (45%), Gaps = 99/438 (22%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
+++ +A FA H Q R++G+PY+ H + ILA + D++ A +LHD V
Sbjct: 59 KRLDEAYDFASTYHKKQMRQSGEPYINHPVEVAFILAKDLHMDE----DSICAALLHDTV 114
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNM 221
+D +L I FG+ V LV GV++L+ I ++ Q N+
Sbjct: 115 EDTSATLDDIRNLFGETVMDLVDGVTKLTSIEV-----SSMDEKQAL-----------NL 158
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLAS 281
R ++ A++++ +I LA RL MR LA+
Sbjct: 159 RKMFL-------AMSKDIRVIIIKLADRL----------------------HNMRT-LAA 188
Query: 282 MWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
+ P +R + R T V +P D S S+K LE + + D
Sbjct: 189 L--PPHRRNFKARETMDVYAPLADRLGIS-------------SIKWELEDLAFLYLEHDE 233
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
+ + + + AQ++ + +++ E+ L K + IS I G
Sbjct: 234 YEHVALM---VQETRAQREQNIT-------STIHMLEQELHK-VGISDFQIQG------- 275
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVV---VGDKNGTLHGPAIQCCYSLLDIVHRL 458
R K L+SI+ KM RKD + +YD A+RV+ VGD CY L VH +
Sbjct: 276 RPKHLWSIYQKMLRKDKSFNDIYDLVAIRVLTKSVGD------------CYLALGAVHTI 323
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W P+ G F DYI PKP+GY+SLHT V G D +E+QIRT +MH+ AE+G+AAHWLYK+
Sbjct: 324 WHPLPGRFKDYIAMPKPNGYRSLHTTVVGVDARPIEIQIRTFEMHDQAEYGIAAHWLYKK 383
Query: 519 TGNKLQSISSMDESDIEA 536
G+ +S DE +I++
Sbjct: 384 NGSSTGKMSR-DEEEIDS 400
>gi|293400748|ref|ZP_06644893.1| GTP diphosphokinase [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291305774|gb|EFE47018.1| GTP diphosphokinase [Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 738
Score = 152 bits (385), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 136/471 (28%), Positives = 214/471 (45%), Gaps = 113/471 (23%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
N + + +A A++ H GQ+RK+G+PY+ H I G ILAML +G +A+ AG+LHD
Sbjct: 30 NIDLITRAYLCAEKNHAGQYRKSGEPYIIHAIQVGYILAML--RTGPKAI---AAGLLHD 84
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRL- 218
VV+D L I E FG+EVA LV V+++ G L ++ + L
Sbjct: 85 VVEDCDVCLEQISEMFGEEVASLVESVTKI-----------------GALKFKDEKEYLA 127
Query: 219 HNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRAD 278
N R I+ A+A++ +I L+ RL + L + + PQ +K+ ++
Sbjct: 128 SNHRKIFI-------AMAKDVRVILIKLSDRLH------NMRTLQY--MTPQKQQKIASE 172
Query: 279 LASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDI 337
+++P +R+G S +K+ LE + F
Sbjct: 173 TLEVYAPIAHRLGIS-------------------------------DIKNELEDLC-FQY 200
Query: 338 LSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEV 397
L+ + +++AK E +K + Q + S++ +L E I +
Sbjct: 201 LNKEK-----YYEIAKLVEKRKTERDAQ-----VQSMIREISSLLDEHQI--------KY 242
Query: 398 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 457
+ R K LYSI+ KM K+ ++ D A+R++ CY +L +H
Sbjct: 243 RIFGRSKHLYSIYKKMITKNKRFEEILDLLAIRIITDTDTA---------CYEILGYIHA 293
Query: 458 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 517
+ PI G F DYI PK + YQSLHT + DG+ EVQIRT+ M E AE G+AAHW YK
Sbjct: 294 KYRPIPGRFKDYIAMPKVNMYQSLHTTIVAEDGNIFEVQIRTESMDEVAEQGIAAHWRYK 353
Query: 518 ETGNKLQSISSMDESDIEAS-------SSLSKDTDDH-----NPLDTDLFQ 556
E N + + + +IE S +S D +D N L D+F+
Sbjct: 354 ENLNGGREVH---QKEIEEQLHWFKDFSVMSDDVNDDAMEYMNLLQKDIFE 401
>gi|254432294|ref|ZP_05045997.1| RelA/SpoT family protein [Cyanobium sp. PCC 7001]
gi|197626747|gb|EDY39306.1| RelA/SpoT family protein [Cyanobium sp. PCC 7001]
Length = 826
Score = 152 bits (385), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 129/419 (30%), Positives = 190/419 (45%), Gaps = 102/419 (24%)
Query: 107 AIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACE 166
A FA + H GQ+R +G+PY+ H + +L + S+ + AG LHDVV+D
Sbjct: 116 AFDFAYQLHEGQYRASGEPYIVHPVAVADLLRDIGASA-----SVIAAGFLHDVVEDTEV 170
Query: 167 SLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTIYA 226
+ +E+ FG EV LV GV++L I+ T E N+R ++
Sbjct: 171 TPDELEQHFGAEVRALVEGVTKLGGIH----------FTNKTEAQAE------NLRRMFL 214
Query: 227 LPPAKARAVAQETLLIWCSLASRL----GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
A+A + ++ LA RL L ALK E Q +I R+ R A +
Sbjct: 215 -------AMASDIRVVLVKLADRLHNMRTLAALKPEK--------QLRIARETREIYAPL 259
Query: 283 WSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 342
NR+G R + +D +F + + +D+ + V
Sbjct: 260 ---ANRLGIGRLKWEL------------EDLAFKILEPE--AYRDVQQQVA--------T 294
Query: 343 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 402
KR + L + + ++ +A L ACE +S R
Sbjct: 295 KRCEREERLGVTVQLLRER-------LAAVGLSACE--------------------VSGR 327
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K LY I+SKM+R+ H++YD ALR++ P++ CY L +VH + PI
Sbjct: 328 PKHLYGIWSKMQRQQKAFHEIYDVAALRIIC---------PSLDGCYRSLAVVHDTFRPI 378
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
G F DYI PKP+GYQSLHTAV G +EVQIRT +MH+ AE+G+AAHW YKE G+
Sbjct: 379 PGRFKDYIGLPKPNGYQSLHTAVIG-RHRPIEVQIRTPEMHQVAEYGIAAHWKYKEGGS 436
Score = 40.0 bits (92), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 758 EVVIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
E V V PNG+++ LR GSTA D A + VG + V +N +L T L++GD V++
Sbjct: 479 EEVFVFTPNGDVVGLRKGSTAVDFAYRIHSEVGNHCQGVRINDRLCPLATPLQNGDFVQI 538
>gi|16330670|ref|NP_441398.1| (p)ppGpp 3'-pyrophosphohydrolase [Synechocystis sp. PCC 6803]
gi|383322412|ref|YP_005383265.1| (p)ppGpp 3'-pyrophosphohydrolase [Synechocystis sp. PCC 6803
substr. GT-I]
gi|383325581|ref|YP_005386434.1| (p)ppGpp 3'-pyrophosphohydrolase [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|383491465|ref|YP_005409141.1| (p)ppGpp 3'-pyrophosphohydrolase [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|384436732|ref|YP_005651456.1| (p)ppGpp 3'-pyrophosphohydrolase [Synechocystis sp. PCC 6803]
gi|451814828|ref|YP_007451280.1| (p)ppGpp 3'-pyrophosphohydrolase [Synechocystis sp. PCC 6803]
gi|6647853|sp|P74007.1|SPOT_SYNY3 RecName: Full=Probable guanosine-3',5'-bis(diphosphate)
3'-pyrophosphohydrolase; AltName: Full=Penta-phosphate
guanosine-3'-pyrophosphohydrolase; Short=(ppGpp)ase
gi|1653162|dbj|BAA18078.1| (p)ppGpp 3'-pyrophosphohydrolase [Synechocystis sp. PCC 6803]
gi|339273764|dbj|BAK50251.1| (p)ppGpp 3'-pyrophosphohydrolase [Synechocystis sp. PCC 6803]
gi|359271731|dbj|BAL29250.1| (p)ppGpp 3'-pyrophosphohydrolase [Synechocystis sp. PCC 6803
substr. GT-I]
gi|359274901|dbj|BAL32419.1| (p)ppGpp 3'-pyrophosphohydrolase [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|359278071|dbj|BAL35588.1| (p)ppGpp 3'-pyrophosphohydrolase [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|407958589|dbj|BAM51829.1| (p)ppGpp 3'-pyrophosphohydrolase [Synechocystis sp. PCC 6803]
gi|451780797|gb|AGF51766.1| (p)ppGpp 3'-pyrophosphohydrolase [Synechocystis sp. PCC 6803]
Length = 760
Score = 152 bits (385), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 134/429 (31%), Positives = 196/429 (45%), Gaps = 98/429 (22%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A FA H Q RK+G+PY+ H + +L L G A+ + AG LHDVV+D
Sbjct: 56 RAFCFAYDLHAQQRRKSGEPYIAHPVAVAGLLRDL---GGDEAM--IAAGFLHDVVEDTD 110
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTIY 225
S+ IE FG+E A LV GV++LS N T H+ N R ++
Sbjct: 111 ISIEQIEALFGEETASLVEGVTKLSKFN-----------FSSTTEHQA-----ENFRRMF 154
Query: 226 ALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASMWS 284
A+A++ +I LA RL + L A L P+ R++ + +++
Sbjct: 155 L-------AMAKDIRVIVVKLADRLHNMRTLDA---------LSPEKQRRIARETKDIFA 198
Query: 285 P-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRK 343
P NR+G R + +D SF + S + + VV + DR
Sbjct: 199 PLANRLGIWRF------------KWELEDLSFKYLEPD--SYRKIQSLVV--EKRGDRES 242
Query: 344 RTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRL 403
R + + D+ + ++D GI E E L R
Sbjct: 243 RLETVKDMLRFR--------LRDEGI---------EHFE----------------LQGRP 269
Query: 404 KSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPID 463
K LY I+ KM +D ++YD ALR++V K CY L +VH ++ PI
Sbjct: 270 KHLYGIYYKMTSQDKAFEEIYDIAALRIIVESKGE---------CYRALSVVHDVFKPIP 320
Query: 464 GEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET-GNK 522
G F DYI PKP+ YQSLHT V G LE+QIRT++MH AE+G+AAHW YKE+ G++
Sbjct: 321 GRFKDYIGLPKPNRYQSLHTTVLGLTSRPLEIQIRTEEMHHVAEYGIAAHWKYKESGGSE 380
Query: 523 LQSISSMDE 531
+++S DE
Sbjct: 381 NATLTSTDE 389
Score = 43.5 bits (101), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 713 ASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRL 772
S + K LR +L W+ L+ ++ K N D V V P GE++ L
Sbjct: 385 TSTDEKFTWLRQLLDWQSDLKDAQEYVENL---KQNLFDDDVY------VFTPKGEVISL 435
Query: 773 RSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
G+T D A + VG K VNGQ + +T LK+GDIVE+
Sbjct: 436 ARGATPVDFAYRIHTEVGHHMKGARVNGQWLGVDTRLKNGDIVEI 480
>gi|254456187|ref|ZP_05069616.1| RelA/SpoT family protein [Candidatus Pelagibacter sp. HTCC7211]
gi|207083189|gb|EDZ60615.1| RelA/SpoT family protein [Candidatus Pelagibacter sp. HTCC7211]
Length = 581
Score = 152 bits (385), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 123/439 (28%), Positives = 202/439 (46%), Gaps = 101/439 (23%)
Query: 93 VTGYPIF-NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
V GY F N E++ KA FA +AH Q R +GDPY H I IL L S T
Sbjct: 11 VKGYNKFLNPERLDKAYNFAVKAHQNQKRASGDPYSVHPIEVANILTDLKLDSA-----T 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
+ G+LHD ++D + +I+ EFGDEVA+LV GV+ +I+V + T G
Sbjct: 66 ITTGLLHDTIEDTFATYDTIKTEFGDEVAELVDGVT-------------KISVFENTAGA 112
Query: 212 EELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQ 270
++ N R + A +++ ++ +A RL + +KA + +
Sbjct: 113 NS---KVENFRKLIL-------ATSKDIRVLLVKIADRLHNMRTIKA--------IPKED 154
Query: 271 IFRKMRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLL 329
+++ + +++P +R+G R ++D L
Sbjct: 155 KRKRIAQETMEIYAPLADRMGMHR-------------------------------IRDEL 183
Query: 330 EAVVPFDILS-DRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLIS 388
E + F+IL+ D RK K D K K + ++ L+ ++
Sbjct: 184 EDL-SFEILNNDARKLIKIRLDEIKLD----KKDIFEELSFELSEILNDNH--------- 229
Query: 389 TSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCC 448
+ + R K+ +SI+ K+++K V + +V D R+++ + I C
Sbjct: 230 ------INAEIYGREKTPFSIWRKVQKKRVSLEQVTDIIGFRIILKN---------IDDC 274
Query: 449 YSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEH 508
Y L I H+ W I G+F DYI +PK +GY+S+HTAV G + +E+QIRT +MHE+AE
Sbjct: 275 YKTLGIFHKKWNCIPGKFKDYISSPKINGYKSIHTAVIGSNKKPIEIQIRTNEMHEFAER 334
Query: 509 GLAAHWLYKETGNKLQSIS 527
G+A+HW YK + + S+S
Sbjct: 335 GVASHWQYK-SSERFNSLS 352
>gi|452202850|ref|YP_007482983.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Dehalococcoides
mccartyi DCMB5]
gi|452109909|gb|AGG05641.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Dehalococcoides
mccartyi DCMB5]
Length = 728
Score = 152 bits (384), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 134/412 (32%), Positives = 191/412 (46%), Gaps = 92/412 (22%)
Query: 117 GQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFG 176
GQ RK+G+P++ H ++ LA L + T+ A +LHDV +DA SL I+++FG
Sbjct: 35 GQMRKSGEPFIEHPLNVAMTLADLQLDAA-----TLSAALLHDVPEDANISLEQIDKKFG 89
Query: 177 DEVAKLVAG---VSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKAR 233
+VAKLV G +S+L+ + + RR N +L E N+R +
Sbjct: 90 ADVAKLVDGVTKLSKLA-LGPAIEDARRPGGN-ASLRQAE------NLRKMLV------- 134
Query: 234 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSR 293
A+A++ +++ LA R F MR A SP R ++
Sbjct: 135 AMAEDLRVVFIKLADR----------------------FHNMRTLQA--LSPEKRRSIAK 170
Query: 294 RITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAK 353
I + PL R + +K LE + F L R R + +L
Sbjct: 171 ETMEIYA--PLAHRLG------------IWELKWQLEDLA-FRYLDPRHYRQ--VANLVD 213
Query: 354 SSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKM 413
S AQ++ + + I L+ E + G+ V +S R K LYSI+ KM
Sbjct: 214 SKLAQRQNYLEHVSAI-----------LQGEFKKN-----GLNVEVSGRPKHLYSIYQKM 257
Query: 414 RR---KDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYI 470
+ + +YD ALRV+V D I CY + IVH LW PI G FDDYI
Sbjct: 258 EKYASQGKQFEDIYDVLALRVLVND---------IPDCYHAVGIVHSLWHPIPGAFDDYI 308
Query: 471 VNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
NPKP+GYQSLHTAV + LEVQ+RT +MH AE+G+AAHW YK G +
Sbjct: 309 ANPKPNGYQSLHTAVMSLGTTPLEVQVRTYQMHHIAEYGVAAHWRYKTAGKE 360
>gi|187924733|ref|YP_001896375.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia phytofirmans PsJN]
gi|187715927|gb|ACD17151.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia phytofirmans PsJN]
Length = 747
Score = 152 bits (383), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/180 (46%), Positives = 112/180 (62%), Gaps = 19/180 (10%)
Query: 348 LHDLAKSSEA----QKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 402
L DLA E ++ AK++ + + S VA E L+KEL + + +S R
Sbjct: 192 LEDLALRFEEPVTYKRIAKLLDEKRVERESYVAQAIERLQKELAAAN-----IRAEVSGR 246
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 247 PKHIYSIWRKMRGKELDFAELYDVRAFRVIV---------PDIKDCYTVLGIVHNLWQPV 297
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH++AE+G+AAHW YKE G +
Sbjct: 298 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHQFAEYGVAAHWRYKEAGTR 357
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 26/131 (19%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYIN------------------QLLRRHRRINVNQGTLGHE 212
I + FG+EVA+LV V +L + Q RR + + + L
Sbjct: 78 IADNFGEEVAQLVGDVRKLLRLGTVSLRAAQNAMPEAGRDAQAARRAQVEALRKMLLAFA 137
Query: 213 E--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 264
+ LA RL ++R A + VA+ETL I+ LA+RLG+W LK ELEDL
Sbjct: 138 QDIRVVLIRLASRLQSLRYYAAAKITPSPDVARETLDIYAPLANRLGIWQLKWELEDLAL 197
Query: 265 AVLQPQIFRKM 275
+P ++++
Sbjct: 198 RFEEPVTYKRI 208
>gi|334143143|ref|YP_004536299.1| (p)ppGpp synthetase I SpoT/RelA [Thioalkalimicrobium cyclicum ALM1]
gi|333964054|gb|AEG30820.1| (p)ppGpp synthetase I, SpoT/RelA [Thioalkalimicrobium cyclicum
ALM1]
Length = 725
Score = 151 bits (381), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 122/433 (28%), Positives = 199/433 (45%), Gaps = 100/433 (23%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
+Q+ A F AH GQ RK G Y+ H + ILA + + ++++A ILHDV+
Sbjct: 24 KQIIAAFEFGDLAHAGQTRKAGGAYIWHPVAVAEILAEI-----QLDHESLIAAILHDVI 78
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNM 221
+D + I + FG++VA ++ GV++L G + +
Sbjct: 79 EDTPYTKQDIIDRFGEKVADIIDGVTKL-----------------GKIAFDN-------- 113
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL-CFAVLQPQIFRKMRADLA 280
P +A+A + +++ S R+ L L L ++ V++P R++ +
Sbjct: 114 -------PQEAQAESFRKMMLAMSRDIRVILIKLADRLHNMRTLGVMRPDKQRRIARETL 166
Query: 281 SMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDL-LEAVVPFDIL 338
+++P R+G + SF + ++DL +A+ P
Sbjct: 167 DIYAPIAARLGIN---------------------SFR------IELEDLGFKAMYP---- 195
Query: 339 SDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVT 398
KR L K + +K +VV+ ALT+ + E G E
Sbjct: 196 ----KRYAALEKAIKKARGNRK-EVVEQISDALTARLNQE---------------GYEAE 235
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+ R K L+S++ KMR+K + +V D A R++V ++ CY L +VH L
Sbjct: 236 VIGREKHLFSLYKKMRQKRLTFVEVLDIFAFRIIV---------KSVDECYRALGLVHSL 286
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
+ P+ G+F DYI PK +GYQSLHT + GP G +EVQIRT+ MHE +EHG+AAHW YK
Sbjct: 287 YKPLPGKFKDYIAIPKGNGYQSLHTLLFGPYGVHIEVQIRTEAMHEVSEHGIAAHWHYKL 346
Query: 519 TGNKLQSISSMDE 531
+G+ ++DE
Sbjct: 347 SGDGANQTHAIDE 359
>gi|330815851|ref|YP_004359556.1| Guanosine polyphosphate pyrophosphohydrolases/synthetase
[Burkholderia gladioli BSR3]
gi|327368244|gb|AEA59600.1| Guanosine polyphosphate pyrophosphohydrolases/synthetase
[Burkholderia gladioli BSR3]
Length = 794
Score = 151 bits (381), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 125/426 (29%), Positives = 196/426 (46%), Gaps = 96/426 (22%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
++V+ A F+ AH GQ+R++G+PY+TH + I A K V+A +LHDV+
Sbjct: 79 KEVKAAFHFSDEAHLGQYRQSGEPYITHPVAVAEICA-----GWKLDAQAVMAALLHDVM 133
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNM 221
+D + E FG +VA+LV G LS ++++ R R E A+ M
Sbjct: 134 EDQGVMKSELAERFGPKVAELVDG---LSKLDKMEFRSR----------EEAQAENFRKM 180
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLAS 281
A+A++ +I LA RL + L ++ + R++ +
Sbjct: 181 LL----------AMARDVRVILVKLADRL------HNMRTLGAVPMEKR--RRVARETLD 222
Query: 282 MWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSD 340
+++P +R+G + + D SF F+ H + LE V
Sbjct: 223 IYAPIAHRLGLNNTYREL------------QDMSFANFNPHRYAT---LEKAV------- 260
Query: 341 RRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLS 400
A+ + + K+++ A A+ E LE E++
Sbjct: 261 ---------KAARGNRREVIGKILESAQRAV-----GEAKLEAEIM-------------- 292
Query: 401 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 460
R K++YSI+ KMR K + +V D RVVV A++C Y+ + +H L+
Sbjct: 293 GREKTIYSIYRKMRDKQLSFSQVLDVYGFRVVVEH--------ALEC-YTCIGALHALYK 343
Query: 461 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 520
P+ G+F DYI PK +GYQSLHT V GP G+ +E Q+RT+KMHE AE G+AAHWLYK G
Sbjct: 344 PVPGKFKDYIAIPKMNGYQSLHTTVVGPFGAPIEFQVRTRKMHEIAEAGVAAHWLYKNGG 403
Query: 521 NKLQSI 526
L +
Sbjct: 404 ADLNDV 409
>gi|209516676|ref|ZP_03265529.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia sp. H160]
gi|209502951|gb|EEA02954.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia sp. H160]
Length = 747
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 112/180 (62%), Gaps = 19/180 (10%)
Query: 348 LHDLA----KSSEAQKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 402
L DLA + + ++ AK++ + + S VA E L++EL + + +S R
Sbjct: 192 LEDLAFRFEEPNTYKRIAKLLDEKRVERESYVAQAIERLQQELAAAQ-----IRAEVSGR 246
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K +YSI+ KMR KD+ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 247 PKHIYSIWRKMRGKDLNFAELYDVRAFRVIV---------PDIKDCYTVLGIVHNLWQPV 297
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW YKE G +
Sbjct: 298 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHWRYKEAGAR 357
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA RL +R A + VA+ETL I+ LA+RLG+W LK ELEDL F +P ++
Sbjct: 147 LASRLQTLRYYAAAKITPSPDVARETLDIYAPLANRLGIWQLKWELEDLAFRFEEPNTYK 206
Query: 274 KM 275
++
Sbjct: 207 RI 208
>gi|91784429|ref|YP_559635.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Burkholderia xenovorans LB400]
gi|91688383|gb|ABE31583.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Burkholderia xenovorans LB400]
Length = 747
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/180 (46%), Positives = 112/180 (62%), Gaps = 19/180 (10%)
Query: 348 LHDLAKSSEA----QKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 402
L DLA E ++ AK++ + + S VA E L+KEL + + +S R
Sbjct: 192 LEDLALRFEEPVTYKRIAKLLDEKRVERESYVAQAIERLQKELAAAH-----IRAEVSGR 246
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 247 PKHIYSIWRKMRGKELDFAELYDVRAFRVIV---------PDIKDCYTVLGIVHNLWQPV 297
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH++AE+G+AAHW YKE G +
Sbjct: 298 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHQFAEYGVAAHWRYKEAGTR 357
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 26/131 (19%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYIN------------------QLLRRHRRINVNQGTLGHE 212
I + FG+EVA+LV V +L + Q RR + + + L
Sbjct: 78 IADNFGEEVAQLVGDVRKLLRLGTVSLRAAQNAMPEAGRDAQAARRAQVEALRKMLLAFA 137
Query: 213 E--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 264
+ LA RL ++R A + VA+ETL I+ LA+RLG+W LK ELEDL
Sbjct: 138 QDIRVVLIRLASRLQSLRYYAAAKITPSPDVARETLDIYAPLANRLGIWQLKWELEDLAL 197
Query: 265 AVLQPQIFRKM 275
+P ++++
Sbjct: 198 RFEEPVTYKRI 208
>gi|372489431|ref|YP_005028996.1| RelA/SpoT family (p)ppGpp synthetase [Dechlorosoma suillum PS]
gi|359355984|gb|AEV27155.1| (p)ppGpp synthetase, RelA/SpoT family [Dechlorosoma suillum PS]
Length = 740
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 133/431 (30%), Positives = 205/431 (47%), Gaps = 88/431 (20%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+++A FA+ A+ +G+ L+H + I+A L K D+ A +L V
Sbjct: 33 IREAALFARDAYGDNTLGSGEGILSHALGMALIIAGL-----KLDADSRAAALLFAVATY 87
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+ L ++ E FG VA LV G+SRL+ LR R V T +E+ ++ +R
Sbjct: 88 DEKGLETLNERFGGGVAHLVGGISRLNR----LRPISRGFVADTTQNPQEMKAQVEVLRK 143
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
++ A+ ++ ++ LASR L AE +DL V + + +
Sbjct: 144 MFL-------AMVEDIRVVLLRLASRTQTLRYYAAEPDDLRVHVARETL---------EL 187
Query: 283 WSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
+SP NR+G + + +D SF H + K + + +L ++
Sbjct: 188 YSPLANRLGV------------WELKWELEDLSFRFI--HPDTYKKIAK------MLDEK 227
Query: 342 R-KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLS 400
R +R +F+ D +++ A + A I
Sbjct: 228 RLEREQFIIDAVDRVKSELAAVGIHKAEI------------------------------Y 257
Query: 401 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 460
R K +YSI++KMR+K V +VYD RALRV+V + ++ CY++L IVH +W
Sbjct: 258 GRPKHIYSIWNKMRKKGVDFSEVYDIRALRVIVDE---------VKDCYTVLGIVHNIWT 308
Query: 461 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 520
PI EFDDYI NPK + Y+SLHTAV+ PDG +LEVQIRT +MH +AE G+AAHW YKE G
Sbjct: 309 PIPKEFDDYISNPKGNNYRSLHTAVRCPDGRSLEVQIRTWEMHRHAELGVAAHWRYKE-G 367
Query: 521 NKLQSISSMDE 531
K S + D+
Sbjct: 368 TKHSSEDNYDD 378
>gi|427825820|ref|ZP_18992882.1| putative GTP pyrophosphokinase [Bordetella bronchiseptica Bbr77]
gi|410591085|emb|CCN06182.1| putative GTP pyrophosphokinase [Bordetella bronchiseptica Bbr77]
Length = 737
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 131/436 (30%), Positives = 197/436 (45%), Gaps = 83/436 (19%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
Q+ A A+A Q TG+P +H RILA L R V V+A + D+
Sbjct: 32 QLAHAAAWAWPRFEAQKALTGEPLASHAAGAVRILASLHTDQATR-VAAVLASLPADLNA 90
Query: 163 DACESLGS-IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNM 221
A + EFG EVA+LV G L + + R G+ +E+ ++
Sbjct: 91 PAPTLRNDPVASEFGVEVARLVQGARALLRLGIVARHASDSEAESGS--QKEMQRKM--- 145
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLAS 281
A+A + ++ LASRL AE + C A
Sbjct: 146 ----------LLAMAADLRIVLMRLASRLQSLRWHAETKTPCAA---------------- 179
Query: 282 MWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
G++R + + PL R + M+DL F L
Sbjct: 180 --------GFARETLDLYT--PLANRLG--------IWQLKWEMEDL-----AFRFLEPE 216
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
R R + H L ++ +V ++A IA ++ +EAL + G+ +S
Sbjct: 217 RYR-QIAHLL-------EEKRVEREAFIA-EAIARMQEALARA---------GVVAEVSG 258
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L +VH +W P
Sbjct: 259 RPKHIYSIWNKMRLKGLDFSQMYDLRALRIIVDD---------VRACYTALGLVHEMWTP 309
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ EFDDYI PKP+GY+SLHT V G A EVQIRT++MH++AE+G+AAHW YKE G
Sbjct: 310 LPEEFDDYISRPKPNGYRSLHTVVTDAQGRAFEVQIRTREMHQFAEYGMAAHWRYKEAGA 369
Query: 522 KLQSISSMDESDIEAS 537
+ +++ E D + S
Sbjct: 370 RGGQVAASSEYDRQLS 385
>gi|427402162|ref|ZP_18893234.1| RelA/SpoT family protein [Massilia timonae CCUG 45783]
gi|425718935|gb|EKU81876.1| RelA/SpoT family protein [Massilia timonae CCUG 45783]
Length = 746
Score = 150 bits (379), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 110/175 (62%), Gaps = 15/175 (8%)
Query: 358 QKKAKVVQDAGIALTSLVACEEA-LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRK 416
++ A+++++ ++ S VA A L+ EL + G++ +S R K +YSI+SKMR K
Sbjct: 215 KRIARMLEEKRMSRESFVASSIARLQSELAAA-----GIKADVSGRPKHIYSIWSKMRGK 269
Query: 417 DVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPS 476
++ ++YD RA RV+V D I+ CY++L ++H +W P+ EFDDYI PKP+
Sbjct: 270 ELDFSELYDVRAFRVIVAD---------IKTCYTVLGVIHNIWTPVPKEFDDYISRPKPN 320
Query: 477 GYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDE 531
GY+SLHT V DG LEVQIRTQ+MH +AE+G+AAHW YKE G DE
Sbjct: 321 GYRSLHTVVTADDGRPLEVQIRTQEMHNFAEYGIAAHWRYKEEGGSNFKSQQYDE 375
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 39/158 (24%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
+T +AG+L ++ + G IEE FG EVA LV GV +QL+R R + V Q +
Sbjct: 67 ETRIAGLLFELALMDPSTFGRIEERFGPEVAALVQGV------HQLIRL-RDLTVGQAPV 119
Query: 210 G-----------HEELADRL-----HNMRTIYALPPAKA----------------RAVAQ 237
G H E ++ +MR + + A RA +
Sbjct: 120 GSGKNAAQQAAAHNETLRKMLLAMATDMRVVLMRLASCAATLRHFAEHKRFDEVTRAYGR 179
Query: 238 ETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
E L + LA+RLG+W LK ELEDL F ++P ++++
Sbjct: 180 EVLDFYAPLANRLGIWQLKWELEDLAFRFIEPDTYKRI 217
>gi|409386207|ref|ZP_11238654.1| GTP pyrophosphokinaseppGpp synthetase I [Lactococcus raffinolactis
4877]
gi|399206527|emb|CCK19569.1| GTP pyrophosphokinaseppGpp synthetase I [Lactococcus raffinolactis
4877]
Length = 736
Score = 150 bits (379), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 123/418 (29%), Positives = 190/418 (45%), Gaps = 103/418 (24%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA+ +A AH Q+R++G+PY+ H I ILA L K TV G LHDVV+D
Sbjct: 28 VKKALVYATNAHKEQYRQSGEPYIIHPIQVAGILAKL-----KLDAVTVACGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+L +E EFG EV + GV++L + + H E+LA+ M
Sbjct: 83 TESTLDDLEAEFGPEVRIITDGVTKLGKVE--YKSHE-----------EQLAENHRKM-- 127
Query: 224 IYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
A++++ +I LA RL + LK L+P +++ + ++
Sbjct: 128 --------LMAMSKDMRVILVKLADRLHNMRTLKH---------LRPDKQKRISRETMAI 170
Query: 283 WSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDE-HVLSMKDLLEAVVPFDILSD 340
++P +R+G SR + +D SF DE ++ L++
Sbjct: 171 YAPLAHRLGISRI------------KWELEDLSFRYLDEIEFYRIRGLMK--------EK 210
Query: 341 RRKRTKFLHDL-AKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTL 399
R R + + ++ +K + +KA VV + +
Sbjct: 211 RADRERLVEEVTSKLKDYTEKAGVVGE--------------------------------I 238
Query: 400 SSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLW 459
R K +YSI+ KM K ++YD A+R ++ Y+ L +H LW
Sbjct: 239 YGRPKHIYSIYRKMHDKKKRFDELYDLIAVRCIL---------ETTSDVYTTLGYIHDLW 289
Query: 460 IPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 517
P+ G F DYI NPK +GYQS+HT V GP G +E QIRT++MHE AE+G+AAHW YK
Sbjct: 290 KPMPGRFKDYIANPKANGYQSVHTTVYGPKG-PMEFQIRTREMHEIAEYGVAAHWAYK 346
>gi|149927844|ref|ZP_01916095.1| RelA/SpoT protein [Limnobacter sp. MED105]
gi|149823466|gb|EDM82697.1| RelA/SpoT protein [Limnobacter sp. MED105]
Length = 764
Score = 150 bits (379), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 129/446 (28%), Positives = 203/446 (45%), Gaps = 81/446 (18%)
Query: 99 FNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILH 158
F+ +V++A+ +A+ T +P + H + +LA L + +T +AG L
Sbjct: 27 FDAARVEEALNYARLHAADHILDTQEPAIQHMLAVADLLAEL-----RADANTRIAGALG 81
Query: 159 DVV--DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI--NVNQGTLGHEEL 214
+V D ES +E++FGDEV ++ L+ + +L + + + + T+
Sbjct: 82 PLVFFDKHLES--QMEKKFGDEVGRM------LASLRKLFKMRSMVGPSATRTTIETLRW 133
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
AD++ +R + A++ + +I L SRL ED+
Sbjct: 134 ADQIETLRKMLL-------AMSTDIRVIMIRLCSRLQTLRHFTSHEDI------------ 174
Query: 275 MRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVP 334
+ + S+W S T+ PL R + +K LE +
Sbjct: 175 -KNEKGSLWP----YAVSHAQETLDLYAPLANRLG------------LWQLKWELEDL-S 216
Query: 335 FDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPG 394
F IL + + + AK++ + + + + A KE L+ + G
Sbjct: 217 FRIL--------------QPNTYKNVAKMLDEKRVEREAFIESAMASIKENLL----LAG 258
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+ +S R K +YSI++KMR K + K+YD RA RV+V + CY+ L I
Sbjct: 259 IHCEISGRPKHIYSIWNKMRGKGISFDKLYDVRACRVIVD---------TVDDCYTALGI 309
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW PI EFDDYI PKP+GYQSLHT VQ G LEVQIRT+ MH++AE+G+AAHW
Sbjct: 310 VHNLWTPISEEFDDYISKPKPNGYQSLHTVVQDETGKTLEVQIRTEAMHQFAEYGVAAHW 369
Query: 515 LYKETGNKLQSISSMDESDIEASSSL 540
YKE+G + S E E +L
Sbjct: 370 RYKESGKDGYTGESRAEGQFEERIAL 395
>gi|407714183|ref|YP_006834748.1| GTP pyrophosphokinase [Burkholderia phenoliruptrix BR3459a]
gi|407236367|gb|AFT86566.1| GTP pyrophosphokinase [Burkholderia phenoliruptrix BR3459a]
Length = 728
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 112/180 (62%), Gaps = 19/180 (10%)
Query: 348 LHDLAKSSEA----QKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 402
L DLA E ++ AK++ + + S VA E L++EL + G+ +S R
Sbjct: 173 LEDLAFRFEEPVVYKRIAKLLDEKRVERESYVAQAIERLQRELAAA-----GIRAEVSGR 227
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 228 PKHIYSIWRKMRGKELDFAELYDVRAFRVIV---------PDIKDCYTVLGIVHNLWQPV 278
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
EFDDYI PKP+GY+SLHT V G DG A EVQIRT +MH++AE+G+AAHW YKE G +
Sbjct: 279 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTHEMHQFAEYGVAAHWRYKEAGAR 338
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 26/131 (19%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYIN------------------QLLRRHRRINVNQGTLGHE 212
I + FG+EVA+LV V +L + Q RR + + + L
Sbjct: 59 IADNFGEEVAQLVGDVRKLLRLGTVSLRAAQNAMPEAGRDAQAARRAQVEALRKMLLAFA 118
Query: 213 E--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 264
+ LA RL ++R A + VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 119 QDIRVVLIRLASRLQSLRYYAAAKLTPSPDVARETLDIYAPLANRLGIWQLKWELEDLAF 178
Query: 265 AVLQPQIFRKM 275
+P +++++
Sbjct: 179 RFEEPVVYKRI 189
>gi|323526737|ref|YP_004228890.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia sp. CCGE1001]
gi|323383739|gb|ADX55830.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia sp. CCGE1001]
Length = 747
Score = 150 bits (378), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 112/180 (62%), Gaps = 19/180 (10%)
Query: 348 LHDLAKSSEA----QKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 402
L DLA E ++ AK++ + + S VA E L++EL + G+ +S R
Sbjct: 192 LEDLAFRFEEPVVYKRIAKLLDEKRVERESYVAQAIERLQRELAAA-----GIRAEVSGR 246
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 247 PKHIYSIWRKMRGKELDFAELYDVRAFRVIV---------PDIKDCYTVLGIVHNLWQPV 297
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
EFDDYI PKP+GY+SLHT V G DG A EVQIRT +MH++AE+G+AAHW YKE G +
Sbjct: 298 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTHEMHQFAEYGVAAHWRYKEAGAR 357
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 88/206 (42%), Gaps = 38/206 (18%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
P F+D A+AF R H G+ R +G+ H T I+ L + A
Sbjct: 14 PSFDD-----AMAFV-RQHAGEVRLSSGELLADHAAGTASIMRTLNVDPPAVLAAALFAL 67
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN------------------QLLR 197
H E I + FG+EVA+LV V +L + Q R
Sbjct: 68 TPH-----LQEPERVIADNFGEEVAQLVGDVRKLLRLGTVSLRAAQNAMPEAGRDAQAAR 122
Query: 198 RHRRINVNQGTLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 249
R + + + L + LA RL ++R A + VA+ETL I+ LA+R
Sbjct: 123 RAQVEALRKMLLAFAQDIRVVLIRLASRLQSLRYYAAAKLTPSPDVARETLDIYAPLANR 182
Query: 250 LGLWALKAELEDLCFAVLQPQIFRKM 275
LG+W LK ELEDL F +P +++++
Sbjct: 183 LGIWQLKWELEDLAFRFEEPVVYKRI 208
>gi|307546995|ref|YP_003899474.1| (p)ppGpp synthetase I SpoT/RelA [Halomonas elongata DSM 2581]
gi|307219019|emb|CBV44289.1| (p)ppGpp synthetase I, SpoT/RelA [Halomonas elongata DSM 2581]
Length = 711
Score = 150 bits (378), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 127/436 (29%), Positives = 206/436 (47%), Gaps = 99/436 (22%)
Query: 86 FIVDGV-DVTGYPIFNDE--QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIP 142
F +D + D G + DE QV++A +A++AH GQ R++G+PY+TH + ILA +
Sbjct: 2 FTIDDLADRLGGYLPQDEIQQVKRAFYYAEQAHDGQRRRSGEPYVTHPLAVANILANMHM 61
Query: 143 SSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI 202
+++A +LHDV++D ++ E+FG VA+LV GVS+L+ I
Sbjct: 62 DH-----QSLMAAMLHDVIEDTGVDKEALGEQFGKPVAELVDGVSKLTQI---------- 106
Query: 203 NVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELED 261
T + +A + + + A+ +++ +I LA RL + L A
Sbjct: 107 -----TFEDKAVAQAENFQKMVLAM--------SRDIRVIIVKLADRLHNMRTLGA---- 149
Query: 262 LCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEH 321
L+P+ R++ + +++ RV I TI R +D SF
Sbjct: 150 -----LRPEKKRRIARETLEIYA---RVASRLGINTI--------RVELEDLSF------ 187
Query: 322 VLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEAL 381
+A+ P + S+R KR S+ Q++A + Q + +L
Sbjct: 188 --------QALHP--MRSERIKRA------VASARGQRRASIRQ-----------IQNSL 220
Query: 382 EKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLH 441
+K L G++ ++ R K L SI+ KMR + ++ D R++ D
Sbjct: 221 QKSL-----DDEGLKGSVVGRQKHLLSIYRKMRDQRKSFAEIMDVFGFRIITQD------ 269
Query: 442 GPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQK 501
+ CY +L +VH L+ P+ G F DYI PK +GYQSLHT + G G +EVQIRT++
Sbjct: 270 ---VDTCYRILGVVHNLYKPVPGRFKDYIAIPKANGYQSLHTTLFGTGGMPIEVQIRTRE 326
Query: 502 MHEYAEHGLAAHWLYK 517
M A +G+AAHWLYK
Sbjct: 327 MEAMANNGIAAHWLYK 342
>gi|385208783|ref|ZP_10035651.1| (p)ppGpp synthetase, RelA/SpoT family [Burkholderia sp. Ch1-1]
gi|385181121|gb|EIF30397.1| (p)ppGpp synthetase, RelA/SpoT family [Burkholderia sp. Ch1-1]
Length = 747
Score = 150 bits (378), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 83/178 (46%), Positives = 111/178 (62%), Gaps = 19/178 (10%)
Query: 348 LHDLAKSSEA----QKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 402
L DLA E ++ AK++ + + S VA E L+KEL + + +S R
Sbjct: 192 LEDLALRFEEPVTYKRIAKLLDEKRVERESYVAQAIERLQKELAAAH-----IRAEVSGR 246
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 247 PKHIYSIWRKMRGKELDFAELYDVRAFRVIV---------PDIKDCYTVLGIVHNLWQPV 297
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 520
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH++AE+G+AAHW YKE G
Sbjct: 298 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHQFAEYGVAAHWRYKEAG 355
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 26/131 (19%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYIN------------------QLLRRHRRINVNQGTLGHE 212
I + FG+EVA+LV V +L + Q RR + + + L
Sbjct: 78 IADNFGEEVAQLVGDVRKLLRLGTVSLRAAQNAMPEAGRDAQAARRAQVEALRKMLLAFA 137
Query: 213 E--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 264
+ LA RL ++R A + VA+ETL I+ LA+RLG+W LK ELEDL
Sbjct: 138 QDIRVVLIRLASRLQSLRYYAAAKITPSPDVARETLDIYAPLANRLGIWQLKWELEDLAL 197
Query: 265 AVLQPQIFRKM 275
+P ++++
Sbjct: 198 RFEEPVTYKRI 208
>gi|237746845|ref|ZP_04577325.1| GTP pyrophosphokinase [Oxalobacter formigenes HOxBLS]
gi|229378196|gb|EEO28287.1| GTP pyrophosphokinase [Oxalobacter formigenes HOxBLS]
Length = 754
Score = 150 bits (378), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/155 (48%), Positives = 96/155 (61%), Gaps = 11/155 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ ++ R K +YSI++KMR K + ++YD RA RV+V D I+ C+++LD
Sbjct: 255 GIKADVTGRPKHIYSIYNKMRGKSLDFSRMYDLRAFRVIVSD---------IKTCFTVLD 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
I+HRLW PI EFDDYI PKP+GYQSLHT V +G EVQIRTQ+MH AE G+AAH
Sbjct: 306 IIHRLWTPILKEFDDYISRPKPNGYQSLHTVVVSENGQPFEVQIRTQEMHRLAEFGVAAH 365
Query: 514 WLYKETGNKLQSISSMDE--SDIEASSSLSKDTDD 546
W YKETG DE S + S D DD
Sbjct: 366 WRYKETGGSSFVAQQYDEKISFLRQLLSWKTDVDD 400
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 85/208 (40%), Gaps = 30/208 (14%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V A AFA+ ++ +G G ILA L + R +AG+L +
Sbjct: 34 VMDAYAFARESYADISLDSGQSAAEFSKSIGLILAELNSDAQTR-----IAGLLAVLPKY 88
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLL---------RRHRRINVNQGTLGHEEL 214
E IE FG EV+ LV V +L + L + +I Q + L
Sbjct: 89 HPEVADQIESRFGTEVSNLVDSVRKLFKLRDLTGGLEEIGHGKNAAQIRKAQAETLRKML 148
Query: 215 ADRLHNMRTIYALPPAK----------------ARAVAQETLLIWCSLASRLGLWALKAE 258
+MR + A+ +R A+ETL I+ LA+RLG+W +K E
Sbjct: 149 LAMAADMRVVMIRLAARMAALRYLARKKEDNDASRHYAKETLEIYAPLANRLGIWQVKWE 208
Query: 259 LEDLCFAVLQPQIFRKMRADLASMWSPR 286
LEDL F + P+ +R + +L + R
Sbjct: 209 LEDLAFRFIDPEAYRTIAKNLEEKRTER 236
>gi|416908762|ref|ZP_11931227.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia sp. TJI49]
gi|325528728|gb|EGD05798.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia sp. TJI49]
Length = 744
Score = 149 bits (377), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 74/144 (51%), Positives = 97/144 (67%), Gaps = 14/144 (9%)
Query: 379 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 438
E L++EL + ++IP +S R K +YSI+ KMR K++ ++YD RA RV+V
Sbjct: 227 ERLQQEL--AQAHIPA---DVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV----- 276
Query: 439 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 498
P I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIR
Sbjct: 277 ----PDIKDCYAVLGIVHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIR 332
Query: 499 TQKMHEYAEHGLAAHWLYKETGNK 522
TQ MH +AE+G+AAHW YKE G +
Sbjct: 333 TQDMHRFAEYGVAAHWRYKEAGTR 356
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 60/131 (45%), Gaps = 26/131 (19%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE---------------- 213
+ E FGDEVA+LV+ V +L + + LR + + G E
Sbjct: 77 LAERFGDEVARLVSDVRKLLRLGTVSLRAAQNAAPDAGRDAAAERRTQIEALRKMLLAFA 136
Query: 214 ---------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 264
LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 137 QDIRVVLIRLASRLQSLRYYAAAKLDPPPDVARETLEIYAPLANRLGIWQLKWELEDLAF 196
Query: 265 AVLQPQIFRKM 275
P ++++
Sbjct: 197 RFEDPVTYKRI 207
>gi|238027732|ref|YP_002911963.1| GTP diphosphokinase [Burkholderia glumae BGR1]
gi|237876926|gb|ACR29259.1| GTP diphosphokinase [Burkholderia glumae BGR1]
Length = 742
Score = 149 bits (377), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 75/144 (52%), Positives = 97/144 (67%), Gaps = 14/144 (9%)
Query: 379 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 438
E LE+EL + + IP +S R K +YSI+ KMR K++ ++YD RA RV+V
Sbjct: 224 ERLEREL--AAAQIPA---EVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV----- 273
Query: 439 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 498
P I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIR
Sbjct: 274 ----PDIKDCYAVLGIVHHLWQPVPREFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIR 329
Query: 499 TQKMHEYAEHGLAAHWLYKETGNK 522
TQ+MH +AE+G+AAHW YKE G +
Sbjct: 330 TQEMHRFAEYGVAAHWRYKEAGAR 353
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 59/130 (45%), Gaps = 25/130 (19%)
Query: 171 IEEEFGDEVAKLVAGVSRL-----------------SYINQLLRRHRRINVNQGTLGHEE 213
I + FG EVA+LVA +L S Q RR + + + L +
Sbjct: 75 ITQRFGAEVARLVADTRKLLKLGTVSLIAARQASDGSRDAQAERRAQIEALRKMLLAFAQ 134
Query: 214 --------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFA 265
LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 135 DIRVVMIRLASRLQSLRYYAAAKLQPPPDVARETLDIYAPLANRLGIWQLKWELEDLAFR 194
Query: 266 VLQPQIFRKM 275
P ++++
Sbjct: 195 FEDPVTYKRI 204
>gi|352085537|ref|ZP_08953157.1| RelA/SpoT family protein [Rhodanobacter sp. 2APBS1]
gi|351681958|gb|EHA65072.1| RelA/SpoT family protein [Rhodanobacter sp. 2APBS1]
Length = 710
Score = 149 bits (377), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 110/308 (35%), Positives = 139/308 (45%), Gaps = 98/308 (31%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR ALP + +A+A+ T I LA+RLG+W LK ELEDL FR
Sbjct: 132 LARQLARMRAAPALPEGERQALARLTRDIHAPLANRLGIWQLKWELEDLA--------FR 183
Query: 274 KMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVV 333
++ D RRI + LDER A
Sbjct: 184 YLQPD------------TYRRIANL-----LDERRAD----------------------- 203
Query: 334 PFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIP 393
R F+ D SL + ALE
Sbjct: 204 ----------REAFIRD----------------------SLAELQRALEAA--------- 222
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ L+ R K +YSI+ KM+RK + +YD RA+RV+V + I CY+ L
Sbjct: 223 GIQAELAGRPKHIYSIWKKMQRKSLDFSDLYDIRAVRVLVDN---------ITDCYAALG 273
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW + GEFDDYI PK +GYQSLHTAV GP G LEVQIRT MH E G+AAH
Sbjct: 274 VVHALWPHLPGEFDDYIARPKANGYQSLHTAVIGPQGKTLEVQIRTHAMHRANELGVAAH 333
Query: 514 WLYKETGN 521
W YKE G+
Sbjct: 334 WRYKEGGS 341
>gi|59710711|ref|YP_203487.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio fischeri
ES114]
gi|59478812|gb|AAW84599.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio fischeri
ES114]
Length = 707
Score = 149 bits (376), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 123/421 (29%), Positives = 193/421 (45%), Gaps = 96/421 (22%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++++ AK AH GQ R +G+PY+ H + RILA + K T++A +LHDV+
Sbjct: 21 EALRRSYLVAKEAHEGQTRSSGEPYIIHPVAVARILAEM-----KLDHKTLMAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNM 221
+D S + E+FGD VA+LV GVS+L ++L R ++ E A+ M
Sbjct: 76 EDTAVSKEELAEQFGDTVAELVDGVSKL---DKLKFRDKK----------EAQAENFRKM 122
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLAS 281
A+ Q+ +I LA R L+P R++ +
Sbjct: 123 ----------VMAMVQDIRVILIKLADRTHNMR--------TLGALRPDKRRRIARETLE 164
Query: 282 MWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSD 340
++SP +R+G I I +T ++ F EA+ P
Sbjct: 165 IFSPLAHRLG----IHNI--------KTELEELGF--------------EALYP------ 192
Query: 341 RRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLS 400
R + L ++ KS+ +K +++Q + +A EA G+ +
Sbjct: 193 --NRYRVLKEVVKSARGNRK-EMIQKIHSEIEGRIA--EA-------------GITGRVI 234
Query: 401 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 460
R K+L++I++KM+ K+ H + D A RV+ + + CY L VH ++
Sbjct: 235 GREKNLFAIYNKMKNKEQRFHTIMDIYAFRVITDN---------VDTCYRALGQVHSIYK 285
Query: 461 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 520
P G DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A G+AAHW YKE
Sbjct: 286 PRPGRIKDYIAVPKANGYQSLHTSMVGPHGVPVEVQIRTEDMEQMANKGVAAHWSYKEGD 345
Query: 521 N 521
N
Sbjct: 346 N 346
>gi|33864375|ref|NP_895935.1| guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [Prochlorococcus
marinus str. MIT 9313]
gi|33641155|emb|CAE22285.1| guanosine-3',5'-bis(diphosphate) 3'-diphosphatase, (ppGpp)ase
[Prochlorococcus marinus str. MIT 9313]
Length = 776
Score = 149 bits (376), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 128/425 (30%), Positives = 192/425 (45%), Gaps = 94/425 (22%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
PI ++ + A A + H GQFR +GDPY+ H + +L + S+ + AG
Sbjct: 62 PIDSEALLAAAFDLAFQLHEGQFRASGDPYIVHPVAVADLLRDIGASAS-----VIAAGF 116
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELAD 216
LHDVV+D + +E+ FG EV +LV GV++L I N T E
Sbjct: 117 LHDVVEDTDLTPEQLEDYFGAEVRELVEGVTKLGGI----------NFTNHTEAQAE--- 163
Query: 217 RLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 276
N+R ++ A+A + ++ LA RL L+ A Q +I R+ R
Sbjct: 164 ---NLRKMFL-------AMASDIRVVLVKLADRLHNMRTLGSLQ----ADKQQRIARETR 209
Query: 277 ADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFD 336
A + NR+G R + +D +F + + +++ + V
Sbjct: 210 EIYAPL---ANRLGIGRF------------KWELEDLAFKLLEPE--AFREIQQEVAT-- 250
Query: 337 ILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGME 396
KR++ + LA + E + +A L CE
Sbjct: 251 ------KRSERENRLANTVELLTER-------LASAGLDTCE------------------ 279
Query: 397 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 456
+S R K LY I+SKM+R+ H+++D ALR++ P+++ CY L +VH
Sbjct: 280 --VSGRPKHLYGIWSKMQRQQKAFHEIFDVAALRII---------APSVETCYRALAVVH 328
Query: 457 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 516
+ PI G F DYI PKP+GYQSLHTAV G +EVQIRT MH +E G+AAHW Y
Sbjct: 329 DTFRPIPGRFKDYIGLPKPNGYQSLHTAVIGKH-RPIEVQIRTPGMHRVSEFGIAAHWEY 387
Query: 517 KETGN 521
KE G+
Sbjct: 388 KEGGS 392
>gi|410421226|ref|YP_006901675.1| GTP pyrophosphokinase [Bordetella bronchiseptica MO149]
gi|408448521|emb|CCJ60204.1| putative GTP pyrophosphokinase [Bordetella bronchiseptica MO149]
Length = 737
Score = 149 bits (376), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 130/436 (29%), Positives = 197/436 (45%), Gaps = 83/436 (19%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
Q+ A A+A Q TG+P +H RILA L R V V+A + D+
Sbjct: 32 QLAHAAAWAWPRFEAQKALTGEPLASHAAGAVRILASLHTDQATR-VAAVLASLPADLNA 90
Query: 163 DACESLGS-IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNM 221
A + EFG EVA+LV G L + + R G+ +E+ ++
Sbjct: 91 PAPTLRNDPVASEFGVEVARLVQGARALLRLGIVARHASDSEAESGS--QKEMQRKM--- 145
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLAS 281
A+A + ++ LASRL AE + C A
Sbjct: 146 ----------LLAMAADLRIVLMRLASRLQSLRWHAETKTPCAA---------------- 179
Query: 282 MWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
G++R + + PL R + M+DL F L
Sbjct: 180 --------GFARETLDLYT--PLANRLG--------IWQLKWEMEDL-----AFRFLEPE 216
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
R + + H L ++ +V ++A IA ++ +EAL + G+ +S
Sbjct: 217 RYK-QIAHLL-------EEKRVEREAFIA-EAIARMQEALARA---------GVVAEVSG 258
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L +VH +W P
Sbjct: 259 RPKHIYSIWNKMRLKGLDFSQMYDLRALRIIVDD---------VRACYTALGLVHEMWTP 309
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ EFDDYI PKP+GY+SLHT V G A EVQIRT++MH++AE+G+AAHW YKE G
Sbjct: 310 LPEEFDDYISRPKPNGYRSLHTVVTDAQGRAFEVQIRTREMHQFAEYGMAAHWRYKEAGA 369
Query: 522 KLQSISSMDESDIEAS 537
+ +++ E D + S
Sbjct: 370 RGGQVAASSEYDRQLS 385
>gi|115351411|ref|YP_773250.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia ambifaria AMMD]
gi|115281399|gb|ABI86916.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia ambifaria AMMD]
Length = 739
Score = 149 bits (376), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 84/180 (46%), Positives = 113/180 (62%), Gaps = 19/180 (10%)
Query: 348 LHDLAKSSE----AQKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 402
L DLA E ++ AK++ + I + VA E L+ EL + ++IP +S R
Sbjct: 190 LEDLAFRFEDPVTYKRIAKLLDEKRIEREAYVAQAIERLQHEL--AEAHIPA---DVSGR 244
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 245 PKHIYSIWRKMRGKELDFAELYDVRAFRVIV---------PDIKDCYAVLGIVHHLWQPV 295
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW YKE G +
Sbjct: 296 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGIAAHWRYKEAGAR 355
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 83/204 (40%), Gaps = 35/204 (17%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P F+D +AF + TG+ H T I+ L + A+ +
Sbjct: 13 PSFDD-----VLAFVRERAGDARLSTGELLADHSAGTASIMRTL--NVDPHAMQAAALFV 65
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--- 213
L ++D L E FG+EVA+LV+ V +L + + R + G EE
Sbjct: 66 LTPHLNDPEREL---TERFGEEVARLVSDVRKLLRLGTVSLRAQNAMPEAGRDAAEERRT 122
Query: 214 ----------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLG 251
LA RL ++R A VA+ETL I+ LA+RLG
Sbjct: 123 QIEALRKMLLAFAQDIRVVLIRLASRLQSLRYYAAAKIDPPPDVARETLEIYAPLANRLG 182
Query: 252 LWALKAELEDLCFAVLQPQIFRKM 275
+W LK ELEDL F P ++++
Sbjct: 183 IWQLKWELEDLAFRFEDPVTYKRI 206
>gi|33594456|ref|NP_882100.1| GTP pyrophosphokinase [Bordetella pertussis Tohama I]
gi|384205753|ref|YP_005591492.1| putative GTP pyrophosphokinase [Bordetella pertussis CS]
gi|408416485|ref|YP_006627192.1| GTP pyrophosphokinase [Bordetella pertussis 18323]
gi|33564531|emb|CAE43846.1| putative GTP pyrophosphokinase [Bordetella pertussis Tohama I]
gi|332383867|gb|AEE68714.1| putative GTP pyrophosphokinase [Bordetella pertussis CS]
gi|401778655|emb|CCJ64097.1| putative GTP pyrophosphokinase [Bordetella pertussis 18323]
Length = 737
Score = 149 bits (376), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 130/436 (29%), Positives = 197/436 (45%), Gaps = 83/436 (19%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
Q+ A A+A Q TG+P +H RILA L R V V+A + D+
Sbjct: 32 QLAHAAAWAWPRFEAQKALTGEPLASHAAGAVRILASLHTDQATR-VAAVLASLPADLNA 90
Query: 163 DACESLGS-IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNM 221
A + EFG EVA+LV G L + + R G+ +E+ ++
Sbjct: 91 PAPTLRNDPVASEFGVEVARLVQGARALLRLGIVARHASDSEAESGS--QKEMQRKM--- 145
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLAS 281
A+A + ++ LASRL AE + C A
Sbjct: 146 ----------LLAMAADLRIVLMRLASRLQSLRWHAETKTPCAA---------------- 179
Query: 282 MWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
G++R + + PL R + M+DL F L
Sbjct: 180 --------GFARETLDLYT--PLANRLG--------IWQLKWEMEDL-----AFRFLEPE 216
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
R + + H L ++ +V ++A IA ++ +EAL + G+ +S
Sbjct: 217 RYK-QIAHLL-------EEKRVEREAFIA-EAIARMQEALARA---------GVVAEVSG 258
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L +VH +W P
Sbjct: 259 RPKHIYSIWNKMRLKGLDFSQMYDLRALRIIVDD---------VRACYTALGLVHEMWTP 309
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ EFDDYI PKP+GY+SLHT V G A EVQIRT++MH++AE+G+AAHW YKE G
Sbjct: 310 LPEEFDDYISRPKPNGYRSLHTVVTDAQGRAFEVQIRTREMHQFAEYGMAAHWRYKEAGA 369
Query: 522 KLQSISSMDESDIEAS 537
+ +++ E D + S
Sbjct: 370 RGGQVAASSEYDRQLS 385
>gi|170701133|ref|ZP_02892107.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia ambifaria IOP40-10]
gi|170133955|gb|EDT02309.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia ambifaria IOP40-10]
Length = 740
Score = 149 bits (376), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 84/180 (46%), Positives = 113/180 (62%), Gaps = 19/180 (10%)
Query: 348 LHDLAKSSE----AQKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 402
L DLA E ++ AK++ + I + VA E L+ EL + ++IP +S R
Sbjct: 191 LEDLAFRFEDPVTYKRIAKLLDEKRIEREAYVAQAIERLQHEL--AEAHIPA---DVSGR 245
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 246 PKHIYSIWRKMRGKELDFAELYDVRAFRVIV---------PDIKDCYAVLGIVHHLWQPV 296
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW YKE G +
Sbjct: 297 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGIAAHWRYKEAGAR 356
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 85/205 (41%), Gaps = 36/205 (17%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P F+D +AF + TG+ H T I+ L + A+ +
Sbjct: 13 PSFDD-----VLAFVRERAGDARLSTGELLADHSAGTASIMRTL--NVDPHAMQAAALFV 65
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE-- 213
L ++D L + FG+EVA+LV+ V +L + + LR + + G EE
Sbjct: 66 LTPHLNDPEREL---TDRFGEEVARLVSDVRKLLRLGTVSLRAAQNAMPDTGRDAAEERR 122
Query: 214 -----------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 250
LA RL ++R A VA+ETL I+ LA+RL
Sbjct: 123 TQIEALRKMLLAFAQDIRVVLIRLASRLQSLRYYAAAKIDPPPDVARETLEIYAPLANRL 182
Query: 251 GLWALKAELEDLCFAVLQPQIFRKM 275
G+W LK ELEDL F P ++++
Sbjct: 183 GIWQLKWELEDLAFRFEDPVTYKRI 207
>gi|330816668|ref|YP_004360373.1| GTP diphosphokinase [Burkholderia gladioli BSR3]
gi|327369061|gb|AEA60417.1| GTP diphosphokinase [Burkholderia gladioli BSR3]
Length = 744
Score = 149 bits (376), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 74/142 (52%), Positives = 96/142 (67%), Gaps = 14/142 (9%)
Query: 381 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 440
LE+EL + + IP +S R K +YSI+ KMR K++ ++YD RA RV+V
Sbjct: 228 LEQEL--AAAQIPA---EVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV------- 275
Query: 441 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 500
P I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ
Sbjct: 276 --PDIKDCYAVLGIVHHLWQPVPREFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQ 333
Query: 501 KMHEYAEHGLAAHWLYKETGNK 522
+MH +AE+G+AAHW YKE G +
Sbjct: 334 EMHRFAEYGVAAHWRYKEAGTR 355
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 61/130 (46%), Gaps = 25/130 (19%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYIN-----------------QLLRRHRRINVNQGTLGHEE 213
I + FG+EVA+LVA V +L + Q RR + + + L +
Sbjct: 77 IAQRFGEEVARLVADVRKLLRLGTVSLMAAKQVPEGNRDAQAERRAQIEALRKMLLAFAQ 136
Query: 214 --------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFA 265
LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 137 DIRVVVIRLASRLQSLRYYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWELEDLAFR 196
Query: 266 VLQPQIFRKM 275
P ++++
Sbjct: 197 FEDPVTYKRI 206
>gi|134295546|ref|YP_001119281.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia vietnamiensis G4]
gi|387902065|ref|YP_006332404.1| GTP pyrophosphokinase [Burkholderia sp. KJ006]
gi|134138703|gb|ABO54446.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia vietnamiensis G4]
gi|387576957|gb|AFJ85673.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Burkholderia sp.
KJ006]
Length = 744
Score = 149 bits (376), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 112/178 (62%), Gaps = 19/178 (10%)
Query: 348 LHDLAKSSE----AQKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 402
L DLA E ++ AK++ + I + VA E L+ EL + ++IP +S R
Sbjct: 191 LEDLAFRFEDPVTYKRIAKLLDEKRIEREAYVAQAIERLQHEL--AQAHIPA---DVSGR 245
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 246 PKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGIVHHLWQPV 296
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 520
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW YKE G
Sbjct: 297 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHWRYKEAG 354
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 26/131 (19%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQLLRR---------------HRRINVN---QGTLGHE 212
+ E FG+EVA+LVA V +L + + R RR + + L
Sbjct: 77 LTERFGEEVARLVADVRKLLRLGTVSLRAAQNAMPDAGRDAAQQRRTQIEALRKMLLAFA 136
Query: 213 E--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 264
+ LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 137 QDIRVVLIRLASRLQSLRYYAAAKADPPPDVARETLEIYAPLANRLGIWQLKWELEDLAF 196
Query: 265 AVLQPQIFRKM 275
P ++++
Sbjct: 197 RFEDPVTYKRI 207
>gi|412341915|ref|YP_006970670.1| GTP pyrophosphokinase [Bordetella bronchiseptica 253]
gi|408771749|emb|CCJ56553.1| putative GTP pyrophosphokinase [Bordetella bronchiseptica 253]
Length = 737
Score = 149 bits (376), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 130/436 (29%), Positives = 196/436 (44%), Gaps = 83/436 (19%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
Q+ A A+A Q TG+P +H RILA L R V V+A + D+
Sbjct: 32 QLAHAAAWAWPRFEAQRALTGEPLASHAAGAVRILASLHTDQATR-VAAVLASLPADLNA 90
Query: 163 DACESLGS-IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNM 221
A + EFG EVA+LV G L + + R G+ +E+ ++
Sbjct: 91 PAPTLRNDPVASEFGVEVARLVQGARALLRLGIVARHASDSEAESGS--QKEMQRKM--- 145
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLAS 281
A+A + ++ LASRL AE C A
Sbjct: 146 ----------LLAMAADLRIVLMRLASRLQSLRWHAETRTPCAA---------------- 179
Query: 282 MWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
G++R + + PL R + M+DL F L
Sbjct: 180 --------GFARETLDLYT--PLANRLG--------IWQLKWEMEDL-----AFRFLEPE 216
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
R + + H L ++ +V ++A IA ++ +EAL + G+ +S
Sbjct: 217 RYK-QIAHLL-------EEKRVEREAFIA-EAIARMQEALARA---------GVVAEVSG 258
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L +VH +W P
Sbjct: 259 RPKHIYSIWNKMRLKGLDFSQMYDLRALRIIVDD---------VRACYTALGLVHEMWTP 309
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ EFDDYI PKP+GY+SLHT V G A EVQIRT++MH++AE+G+AAHW YKE G
Sbjct: 310 LPEEFDDYISRPKPNGYRSLHTVVTDAQGRAFEVQIRTREMHQFAEYGMAAHWRYKEAGA 369
Query: 522 KLQSISSMDESDIEAS 537
+ +++ E D + S
Sbjct: 370 RGGQVAASSEYDRQLS 385
>gi|402566725|ref|YP_006616070.1| GTP pyrophosphokinase ppGpp synthetase I [Burkholderia cepacia GG4]
gi|402247922|gb|AFQ48376.1| GTP pyrophosphokinase ppGpp synthetase I [Burkholderia cepacia GG4]
Length = 744
Score = 149 bits (376), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 83/180 (46%), Positives = 114/180 (63%), Gaps = 19/180 (10%)
Query: 348 LHDLAKSSE----AQKKAKVVQDAGIALTSLVACEEALEK-ELLISTSYIPGMEVTLSSR 402
L DLA E ++ AK++ + I + VA EA+E+ + ++ ++IP +S R
Sbjct: 191 LEDLAFRFEDPVTYKRIAKLLDEKRIEREAYVA--EAIERLQHELAEAHIPA---DVSGR 245
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 246 PKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYAVLGIVHHLWQPV 296
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ MH +AE+G+AAHW YKE G +
Sbjct: 297 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQDMHRFAEYGVAAHWRYKEAGAR 356
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 61/131 (46%), Gaps = 26/131 (19%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE---------------- 213
+ E FG+EVA+LVA V +L + + LR + + G EE
Sbjct: 77 LTERFGEEVARLVADVRKLLRLGTVSLRAAQNAKPDTGRDAAEERRTQIEALRKMLLAFA 136
Query: 214 ---------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 264
LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 137 QDIRVVLIRLASRLQSLRYYAAAKIDPPPDVARETLEIYAPLANRLGIWQLKWELEDLAF 196
Query: 265 AVLQPQIFRKM 275
P ++++
Sbjct: 197 RFEDPVTYKRI 207
>gi|167836853|ref|ZP_02463736.1| GTP pyrophosphokinase [Burkholderia thailandensis MSMB43]
gi|424904162|ref|ZP_18327672.1| GTP pyrophosphokinase [Burkholderia thailandensis MSMB43]
gi|390930140|gb|EIP87542.1| GTP pyrophosphokinase [Burkholderia thailandensis MSMB43]
Length = 747
Score = 149 bits (375), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 74/144 (51%), Positives = 97/144 (67%), Gaps = 14/144 (9%)
Query: 379 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 438
E L++EL + +IP +S R K +YSI+ KMR K++ ++YD RA RV+V
Sbjct: 228 ERLQREL--AAVHIPA---EVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV----- 277
Query: 439 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 498
P I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIR
Sbjct: 278 ----PDIRDCYTVLGIVHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIR 333
Query: 499 TQKMHEYAEHGLAAHWLYKETGNK 522
TQ+MH +AE+G+AAHW YKE G +
Sbjct: 334 TQEMHRFAEYGVAAHWRYKEAGAR 357
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 82/197 (41%), Gaps = 37/197 (18%)
Query: 108 IAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLI--PSSGKRAVDTVVAGILHDVVDDA 164
+AF R H G R +G+ H T I+ L P + + A +A L D
Sbjct: 20 LAFV-REHAGDARLSSGELLADHATGTSAIMQRLNVDPPATQAAALFALAPYLSD----- 73
Query: 165 CESLGSIEEEFGDEVAKLVAGVSRL------------------SYINQLLRRHRRINVNQ 206
I FGDEVA+LV V +L S Q RR + + +
Sbjct: 74 --PEKQIAGRFGDEVARLVTDVRKLLRLGTVSLRAAQSAPADASRDAQAERRAQIEALRK 131
Query: 207 GTLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 258
L + LA RL ++R A VA+ETL I+ LA+RLG+W LK E
Sbjct: 132 MLLAFAQDIRVVLIRLASRLQSLRYYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWE 191
Query: 259 LEDLCFAVLQPQIFRKM 275
LEDL F P ++++
Sbjct: 192 LEDLAFRFEDPVTYKRI 208
>gi|161524953|ref|YP_001579965.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia multivorans ATCC
17616]
gi|189350299|ref|YP_001945927.1| GTP pyrophosphokinase [Burkholderia multivorans ATCC 17616]
gi|160342382|gb|ABX15468.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia multivorans ATCC
17616]
gi|189334321|dbj|BAG43391.1| GTP pyrophosphokinase [Burkholderia multivorans ATCC 17616]
Length = 744
Score = 149 bits (375), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 96/144 (66%), Gaps = 14/144 (9%)
Query: 379 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 438
E L++EL + ++ +S R K +YSI+ KMR K++ ++YD RA RV+V
Sbjct: 227 ERLQQELAAAN-----VQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV----- 276
Query: 439 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 498
P I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIR
Sbjct: 277 ----PDIKDCYAVLGIVHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIR 332
Query: 499 TQKMHEYAEHGLAAHWLYKETGNK 522
TQ+MH +AE+G+AAHW YKE G +
Sbjct: 333 TQEMHRFAEYGVAAHWRYKEAGTR 356
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 61/131 (46%), Gaps = 26/131 (19%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQLLRR---------------HRRINVN---QGTLGHE 212
+ E FGDEVA+LVA V +L + + R RR + + L
Sbjct: 77 LTERFGDEVARLVADVRKLLRLGTVSLRAAQHAAPEAGRDAAQQRRAQIEALRKMLLAFA 136
Query: 213 E--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 264
+ LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 137 QDIRVVLIRLASRLQSLRYYAAAKLEPPPEVARETLEIYAPLANRLGIWQLKWELEDLAF 196
Query: 265 AVLQPQIFRKM 275
P ++++
Sbjct: 197 RFEDPITYKRI 207
>gi|421475885|ref|ZP_15923817.1| RelA/SpoT family protein [Burkholderia multivorans CF2]
gi|400229518|gb|EJO59365.1| RelA/SpoT family protein [Burkholderia multivorans CF2]
Length = 744
Score = 149 bits (375), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 96/144 (66%), Gaps = 14/144 (9%)
Query: 379 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 438
E L++EL + ++ +S R K +YSI+ KMR K++ ++YD RA RV+V
Sbjct: 227 ERLQQELAAAN-----VQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV----- 276
Query: 439 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 498
P I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIR
Sbjct: 277 ----PDIKDCYAVLGIVHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIR 332
Query: 499 TQKMHEYAEHGLAAHWLYKETGNK 522
TQ+MH +AE+G+AAHW YKE G +
Sbjct: 333 TQEMHRFAEYGVAAHWRYKEAGTR 356
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 61/131 (46%), Gaps = 26/131 (19%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQLLRR---------------HRRINVN---QGTLGHE 212
+ E FGDEVA+LVA V +L + + R RR + + L
Sbjct: 77 LTERFGDEVARLVADVRKLLRLGTVSLRAAQHAAPEAGRDAAQQRRAQIEALRKMLLAFA 136
Query: 213 E--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 264
+ LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 137 QDIRVVLIRLASRLQSLRYYAAAKLEPPPEVARETLEIYAPLANRLGIWQLKWELEDLAF 196
Query: 265 AVLQPQIFRKM 275
P ++++
Sbjct: 197 RFEDPITYKRI 207
>gi|221197732|ref|ZP_03570778.1| GTP diphosphokinase [Burkholderia multivorans CGD2M]
gi|221204710|ref|ZP_03577727.1| RelA/SpoT family protein [Burkholderia multivorans CGD2]
gi|221214905|ref|ZP_03587873.1| GTP diphosphokinase [Burkholderia multivorans CGD1]
gi|421467902|ref|ZP_15916483.1| RelA/SpoT family protein [Burkholderia multivorans ATCC BAA-247]
gi|221165132|gb|EED97610.1| GTP diphosphokinase [Burkholderia multivorans CGD1]
gi|221175567|gb|EEE07997.1| RelA/SpoT family protein [Burkholderia multivorans CGD2]
gi|221181664|gb|EEE14065.1| GTP diphosphokinase [Burkholderia multivorans CGD2M]
gi|400232987|gb|EJO62569.1| RelA/SpoT family protein [Burkholderia multivorans ATCC BAA-247]
Length = 744
Score = 149 bits (375), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 96/144 (66%), Gaps = 14/144 (9%)
Query: 379 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 438
E L++EL + ++ +S R K +YSI+ KMR K++ ++YD RA RV+V
Sbjct: 227 ERLQQELAAAN-----VQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV----- 276
Query: 439 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 498
P I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIR
Sbjct: 277 ----PDIKDCYAVLGIVHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIR 332
Query: 499 TQKMHEYAEHGLAAHWLYKETGNK 522
TQ+MH +AE+G+AAHW YKE G +
Sbjct: 333 TQEMHRFAEYGVAAHWRYKEAGTR 356
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 61/131 (46%), Gaps = 26/131 (19%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQLLRR---------------HRRINVN---QGTLGHE 212
+ E FGDEVA+LVA V +L + + R RR + + L
Sbjct: 77 LTERFGDEVARLVADVRKLLRLGTVSLRAAQHAAPEAGRDAAQQRRAQIEALRKMLLAFA 136
Query: 213 E--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 264
+ LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 137 QDIRVVLIRLASRLQSLRYYAAAKLEPPPEVARETLEIYAPLANRLGIWQLKWELEDLAF 196
Query: 265 AVLQPQIFRKM 275
P ++++
Sbjct: 197 RFEDPITYKRI 207
>gi|33602751|ref|NP_890311.1| GTP pyrophosphokinase [Bordetella bronchiseptica RB50]
gi|427815767|ref|ZP_18982831.1| putative GTP pyrophosphokinase [Bordetella bronchiseptica 1289]
gi|33577193|emb|CAE35750.1| putative GTP pyrophosphokinase [Bordetella bronchiseptica RB50]
gi|410566767|emb|CCN24336.1| putative GTP pyrophosphokinase [Bordetella bronchiseptica 1289]
Length = 737
Score = 149 bits (375), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 130/436 (29%), Positives = 196/436 (44%), Gaps = 83/436 (19%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
Q+ A A+A Q TG+P +H RILA L R V V+A + D+
Sbjct: 32 QLAHAAAWAWPRFEAQKALTGEPLASHAAGAVRILASLHTDQATR-VAAVLASLPADLNA 90
Query: 163 DACESLGS-IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNM 221
A + EFG EVA+LV G L + + R G+ +E+ ++
Sbjct: 91 PAPTLRNDPVASEFGVEVARLVQGARALLRLGIVARHASDSEAESGS--QKEMQRKM--- 145
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLAS 281
A+A + ++ LASRL AE C A
Sbjct: 146 ----------LLAMAADLRIVLMRLASRLQSLRWHAETRTPCAA---------------- 179
Query: 282 MWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
G++R + + PL R + M+DL F L
Sbjct: 180 --------GFARETLDLYT--PLANRLG--------IWQLKWEMEDL-----AFRFLEPE 216
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
R + + H L ++ +V ++A IA ++ +EAL + G+ +S
Sbjct: 217 RYK-QIAHLL-------EEKRVEREAFIA-EAIARMQEALARA---------GVVAEVSG 258
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L +VH +W P
Sbjct: 259 RPKHIYSIWNKMRLKGLDFSQMYDLRALRIIVDD---------VRACYTALGLVHEMWTP 309
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ EFDDYI PKP+GY+SLHT V G A EVQIRT++MH++AE+G+AAHW YKE G
Sbjct: 310 LPEEFDDYISRPKPNGYRSLHTVVTDAQGRAFEVQIRTREMHQFAEYGMAAHWRYKEAGA 369
Query: 522 KLQSISSMDESDIEAS 537
+ +++ E D + S
Sbjct: 370 RGGQVAASSEYDRQLS 385
>gi|420251756|ref|ZP_14754917.1| (p)ppGpp synthetase, RelA/SpoT family [Burkholderia sp. BT03]
gi|398057279|gb|EJL49251.1| (p)ppGpp synthetase, RelA/SpoT family [Burkholderia sp. BT03]
Length = 747
Score = 149 bits (375), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 68/124 (54%), Positives = 88/124 (70%), Gaps = 9/124 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH L
Sbjct: 244 VSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGIVHNL 294
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH++AE+G+AAHW YKE
Sbjct: 295 WQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHQFAEYGVAAHWRYKE 354
Query: 519 TGNK 522
G +
Sbjct: 355 AGTR 358
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 90/208 (43%), Gaps = 42/208 (20%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVV 153
P F+D A+AF R H G R +G+P H T I+ L VD V+
Sbjct: 15 PSFDD-----ALAFV-REHAGDARLSSGEPLADHAAGTAAIMRTL-------NVDPPAVL 61
Query: 154 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN------------------QL 195
A L + +I + FG+EVA+LV V +L + Q
Sbjct: 62 AAALFSLTPHLANPEQTIADNFGEEVAQLVGDVRKLLRLGTVSMRAAQNAMPEAGRDAQA 121
Query: 196 LRRHRRINVNQGTLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 247
RR + + + L + LA RL ++R A VA+ETL I+ LA
Sbjct: 122 ARRAQVEALRKMLLAFAQDIRVVLIRLASRLQSLRYYAAAKITPTPDVARETLDIYAPLA 181
Query: 248 SRLGLWALKAELEDLCFAVLQPQIFRKM 275
+RLG+W LK ELEDL +PQ ++++
Sbjct: 182 NRLGIWQLKWELEDLALRFEEPQTYKRI 209
>gi|390571447|ref|ZP_10251688.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia terrae BS001]
gi|389936550|gb|EIM98437.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia terrae BS001]
Length = 746
Score = 149 bits (375), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 68/124 (54%), Positives = 88/124 (70%), Gaps = 9/124 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH L
Sbjct: 243 VSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGIVHNL 293
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH++AE+G+AAHW YKE
Sbjct: 294 WQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHQFAEYGVAAHWRYKE 353
Query: 519 TGNK 522
G +
Sbjct: 354 AGTR 357
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 90/208 (43%), Gaps = 42/208 (20%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVV 153
P F+D A+AF R H G R +G+P H T I+ L VD V+
Sbjct: 14 PSFDD-----ALAFV-REHAGDARLSSGEPLADHAAGTAAIMRTL-------NVDPPAVL 60
Query: 154 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN------------------QL 195
A L + +I + FG+EVA+LV V +L + Q
Sbjct: 61 AAALFSLTPHLANPEQTIADNFGEEVAQLVGDVRKLLRLGTVSMRAAQNAMPEAGRDAQA 120
Query: 196 LRRHRRINVNQGTLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 247
RR + + + L + LA RL ++R A VA+ETL I+ LA
Sbjct: 121 ARRAQVEALRKMLLAFAQDIRVVLIRLASRLQSLRYYAAAKITPTPDVARETLDIYAPLA 180
Query: 248 SRLGLWALKAELEDLCFAVLQPQIFRKM 275
+RLG+W LK ELEDL +PQ ++++
Sbjct: 181 NRLGIWQLKWELEDLALRFEEPQTYKRI 208
>gi|171318441|ref|ZP_02907596.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia ambifaria MEX-5]
gi|171096355|gb|EDT41257.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia ambifaria MEX-5]
Length = 740
Score = 148 bits (374), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 83/180 (46%), Positives = 113/180 (62%), Gaps = 19/180 (10%)
Query: 348 LHDLAKSSE----AQKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 402
L DLA E ++ AK++ + + + VA E L+ EL + ++IP +S R
Sbjct: 191 LEDLAFRFEDPVTYKRIAKLLDEKRVEREAYVAQAIERLQHEL--AEAHIPA---DVSGR 245
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 246 PKHIYSIWRKMRGKELDFAELYDVRAFRVIV---------PDIKDCYAVLGIVHHLWQPV 296
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW YKE G +
Sbjct: 297 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGIAAHWRYKEAGAR 356
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 26/131 (19%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE---------------- 213
+ E FG+EVA+LV+ V +L + + LR + + G +E
Sbjct: 77 LTERFGEEVARLVSDVRKLLRLGTVSLRAAQNAMPDAGRDAAQERRTQIEALRKMLLAFA 136
Query: 214 ---------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 264
LA RL ++R A V +ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 137 QDIRVVLIRLASRLQSLRYYAAAKIDPPPDVGRETLDIYAPLANRLGIWQLKWELEDLAF 196
Query: 265 AVLQPQIFRKM 275
P ++++
Sbjct: 197 RFEDPVTYKRI 207
>gi|359797514|ref|ZP_09300098.1| GTP pyrophosphokinase [Achromobacter arsenitoxydans SY8]
gi|359364625|gb|EHK66338.1| GTP pyrophosphokinase [Achromobacter arsenitoxydans SY8]
Length = 758
Score = 148 bits (374), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 103/172 (59%), Gaps = 24/172 (13%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L
Sbjct: 251 GIDAEVSGRPKHIYSIWNKMRVKRLDFSQMYDLRALRIIVDD---------VRACYTALG 301
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH +W P+ EFDDYI PKP+GY+SLHT V DG EVQIRT++MH++AE+G+AAH
Sbjct: 302 MVHEMWTPLSDEFDDYISRPKPNGYRSLHTVVADDDGRPFEVQIRTREMHQFAEYGMAAH 361
Query: 514 WLYKETGNKLQSISSMDE---------------SDIEASSSLSKDTDDHNPL 550
W YKE G K +S+ E SD+E + + DT P+
Sbjct: 362 WRYKEAGAKGGQVSASSEYDRQLAWMRQLLAWNSDVEGGAEAAPDTAKAAPV 413
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 86/203 (42%), Gaps = 22/203 (10%)
Query: 90 GVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAV 149
G+D G + + +A+A+++ GQ TG+P H RILA L + RA
Sbjct: 24 GLDADGLALLD-----RAVAWSEPRFEGQNALTGEPLAGHGAGVVRILAALHTDAATRAA 78
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
+ A + + FG E+A+LV G L + + R+ G+
Sbjct: 79 ALLAALPTDFMAPAPSLRNDPVATAFGAEIARLVQGARALLRLGVVARQASDAAAESGSQ 138
Query: 210 GHEE-----------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+ LA RL +R + A+ETL ++ LA+RLG+
Sbjct: 139 KEMQRKMLLAMAADLRIVLMRLASRLRTLRWHAESKAPCSPDFARETLDLYAPLANRLGI 198
Query: 253 WALKAELEDLCFAVLQPQIFRKM 275
W +K E+EDL F L+P ++++
Sbjct: 199 WQIKWEMEDLSFRFLEPDKYKQI 221
>gi|172060450|ref|YP_001808102.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia ambifaria MC40-6]
gi|171992967|gb|ACB63886.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia ambifaria MC40-6]
Length = 739
Score = 148 bits (374), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 83/180 (46%), Positives = 113/180 (62%), Gaps = 19/180 (10%)
Query: 348 LHDLAKSSE----AQKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 402
L DLA E ++ AK++ + + + VA E L+ EL + ++IP +S R
Sbjct: 190 LEDLAFRFEDPVTYKRIAKLLDEKRVEREAYVAQAIERLQHEL--AEAHIPA---DVSGR 244
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 245 PKHIYSIWRKMRGKELDFAELYDVRAFRVIV---------PDIKDCYAVLGIVHHLWQPV 295
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW YKE G +
Sbjct: 296 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGIAAHWRYKEAGAR 355
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 83/204 (40%), Gaps = 35/204 (17%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P F+D +AF + TG+ H T I+ L + A+ +
Sbjct: 13 PSFDD-----VLAFVRERAGDARLSTGELLADHSAGTASIMRTL--NVDPHAMQAAALFV 65
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--- 213
L ++D L E FG+EVA+LV+ V +L + + R + G EE
Sbjct: 66 LTPHLNDPEREL---TERFGEEVARLVSDVRKLLRLGTVSLRAQNAMPEAGRDAAEERRT 122
Query: 214 ----------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLG 251
LA RL ++R A VA+ETL I+ LA+RLG
Sbjct: 123 QIEALRKMLLAFAQDIRVVLIRLASRLQSLRYYAAAKIDPPPDVARETLEIYAPLANRLG 182
Query: 252 LWALKAELEDLCFAVLQPQIFRKM 275
+W LK ELEDL F P ++++
Sbjct: 183 IWQLKWELEDLAFRFEDPVTYKRI 206
>gi|167562969|ref|ZP_02355885.1| GTP diphosphokinase [Burkholderia oklahomensis EO147]
gi|167570157|ref|ZP_02363031.1| GTP diphosphokinase [Burkholderia oklahomensis C6786]
Length = 748
Score = 148 bits (374), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 112/180 (62%), Gaps = 19/180 (10%)
Query: 348 LHDLAKSSE----AQKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 402
L DLA E ++ AK++ + I + VA E L++EL + ++ +S R
Sbjct: 192 LEDLAFRFEDPVTYKRIAKLLDEKRIEREAYVAEAIERLQRELAAAH-----IQAEVSGR 246
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 247 PKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGIVHHLWQPV 297
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW YKE G +
Sbjct: 298 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHWRYKEAGAR 357
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 88/211 (41%), Gaps = 48/211 (22%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVV 153
P F+D +AF R H G R +G+ H T I+ L VD V
Sbjct: 14 PSFDD-----VLAFV-REHAGDARLSSGELLADHAAGTSTIMQRL-------NVDPPAVQ 60
Query: 154 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHE 212
A L + + I E FGDEVA+LV V +L + + LR + V+ G
Sbjct: 61 AAALFALAPYLSDPEKQIAERFGDEVARLVTDVRKLLRLGTVSLRAAQSAPVDAGRDAQA 120
Query: 213 E-------------------------LADRLHNMRTIYAL---PPAKARAVAQETLLIWC 244
E LA RL ++R A PP A A+ETL I+
Sbjct: 121 ERRAQIEALRKMLLAFAQDIRVVLIRLASRLQSLRYYAAAKIEPPPDA---ARETLEIYA 177
Query: 245 SLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
LA+RLG+W LK ELEDL F P ++++
Sbjct: 178 PLANRLGIWQLKWELEDLAFRFEDPVTYKRI 208
>gi|83644638|ref|YP_433073.1| GTP pyrophosphokinase [Hahella chejuensis KCTC 2396]
gi|83632681|gb|ABC28648.1| GTP pyrophosphokinase [Hahella chejuensis KCTC 2396]
Length = 746
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/146 (53%), Positives = 96/146 (65%), Gaps = 14/146 (9%)
Query: 380 ALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGT 439
AL +EL S G++ LS R K +YSI+ KM RK + +VYD RA+R++V
Sbjct: 247 ALRQELEAS-----GIKAELSGRAKHIYSIWRKMHRKGIDFSQVYDIRAIRILV------ 295
Query: 440 LHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRT 499
P+I+ CYS L +VH LW I EFDDYI NPK +GYQSLHTAV GP G +EVQIRT
Sbjct: 296 ---PSIRDCYSALGVVHALWRHIPHEFDDYIANPKQNGYQSLHTAVVGPSGKIMEVQIRT 352
Query: 500 QKMHEYAEHGLAAHWLYKETGNKLQS 525
QKMHE AE G+ AHWLYK T + +S
Sbjct: 353 QKMHEEAELGVCAHWLYKGTDTQQKS 378
Score = 63.2 bits (152), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 18/143 (12%)
Query: 151 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL--------------- 195
+++A +L+ V + SL + EEFG+EV+KL+ GVS+++ I+ L
Sbjct: 84 SLIAAVLYRAVREGKLSLVRVNEEFGEEVSKLIEGVSQMAAISSLRHPIQGSVLGQTQTQ 143
Query: 196 ---LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+RR ++ + +LA+R +R + K VA+E I+ LA RLG+
Sbjct: 144 VDNIRRMLVTMIDDVRVALIKLAERTCAIRDVKNAGSDKRHRVAREVFDIYAPLAHRLGI 203
Query: 253 WALKAELEDLCFAVLQPQIFRKM 275
LK ELEDL F L ++K+
Sbjct: 204 GYLKWELEDLSFRYLHETAYKKI 226
>gi|422323088|ref|ZP_16404128.1| GTP pyrophosphokinase [Achromobacter xylosoxidans C54]
gi|317401930|gb|EFV82535.1| GTP pyrophosphokinase [Achromobacter xylosoxidans C54]
Length = 652
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 94/140 (67%), Gaps = 9/140 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+E +S R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L
Sbjct: 140 GIEAEVSGRPKHIYSIWNKMRVKRLDFSQMYDLRALRIIVDD---------VRACYTALG 190
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH +W P+ EFDDYI PKP+GY+SLHT V DG EVQIRT++MH++AE+G+AAH
Sbjct: 191 MVHEMWTPLSDEFDDYISRPKPNGYRSLHTVVADDDGRPFEVQIRTREMHQFAEYGMAAH 250
Query: 514 WLYKETGNKLQSISSMDESD 533
W YKE G K +++ E D
Sbjct: 251 WRYKEAGAKGGQVAASSEYD 270
Score = 47.8 bits (112), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA RL +R + A A+ETL ++ LA+RLG+W +K E+EDL F L+P ++
Sbjct: 49 LASRLRTLRWHAESKTPCSTAFARETLDLYAPLANRLGIWQIKWEMEDLAFRFLEPDRYK 108
Query: 274 KM 275
++
Sbjct: 109 QI 110
>gi|311104723|ref|YP_003977576.1| GTP pyrophosphokinase [Achromobacter xylosoxidans A8]
gi|310759412|gb|ADP14861.1| GTP pyrophosphokinase [Achromobacter xylosoxidans A8]
Length = 755
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 93/140 (66%), Gaps = 9/140 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+E +S R K +YSI++KMR K + ++YD RALR++V D G CY+ L
Sbjct: 251 GVEAEVSGRPKHIYSIWNKMRVKRLDFSQMYDLRALRIIVDDVRG---------CYTALG 301
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH +W PI EFDDYI PKP+GY+SLHT V DG EVQIRT++MH++AE+G+AAH
Sbjct: 302 MVHEMWTPISEEFDDYISRPKPNGYRSLHTVVADDDGRPFEVQIRTREMHQFAEYGMAAH 361
Query: 514 WLYKETGNKLQSISSMDESD 533
W YKE G K +++ E D
Sbjct: 362 WRYKEAGAKGGQVAASSEYD 381
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 87/203 (42%), Gaps = 22/203 (10%)
Query: 90 GVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAV 149
G+D G + + +A+A+A+ GQ TG+P H RILA L + RA
Sbjct: 24 GLDADGMALID-----QAVAWAEPRFEGQQALTGEPLAGHGAGVVRILAALHTDAATRAA 78
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
+ A + + FG E+A+LV G L + + R+ G+
Sbjct: 79 ALLAALPTDLMAPAPSLRNDPVAATFGAEIARLVQGTRALLRLGVVARQASDAAAESGSQ 138
Query: 210 GHEE-----------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+ LA RL +R + A+ETL ++ LA+RLG+
Sbjct: 139 KEMQRKMLLAMAADLRIVLMRLASRLRTLRWHAESKAPCSTDFARETLDLYAPLANRLGI 198
Query: 253 WALKAELEDLCFAVLQPQIFRKM 275
W +K E+EDL F L+P+ ++++
Sbjct: 199 WQIKWEMEDLAFRFLEPEKYKQI 221
>gi|309782525|ref|ZP_07677249.1| GTP diphosphokinase [Ralstonia sp. 5_7_47FAA]
gi|404396238|ref|ZP_10988033.1| RelA/SpoT family protein [Ralstonia sp. 5_2_56FAA]
gi|308918862|gb|EFP64535.1| GTP diphosphokinase [Ralstonia sp. 5_7_47FAA]
gi|348614727|gb|EGY64266.1| RelA/SpoT family protein [Ralstonia sp. 5_2_56FAA]
Length = 741
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 92/139 (66%), Gaps = 9/139 (6%)
Query: 384 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 443
E L T + G++ +S R K +YSI+ KMR K++ +YD RA RV+V D
Sbjct: 231 EQLQKTLHDAGIQAEVSGRPKHIYSIWKKMRGKELDFADLYDVRAFRVIVDD-------- 282
Query: 444 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 503
I+ CY++L VH +W PI EFDDYI PK +GY SLHT V G DG ALEVQIRT++MH
Sbjct: 283 -IKDCYTVLGFVHHMWQPIPKEFDDYISRPKANGYMSLHTVVIGDDGRALEVQIRTREMH 341
Query: 504 EYAEHGLAAHWLYKETGNK 522
+AE+G+AAHW YKE GNK
Sbjct: 342 HFAEYGVAAHWRYKEAGNK 360
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 87/202 (43%), Gaps = 35/202 (17%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT--VVAGILHD 159
EQV +AI + TG+P +H T IL L VDT + A L
Sbjct: 17 EQVARAIEYLAANAADSVTLTGEPLESHARGTIAILEGL-------RVDTPSLQAAALFL 69
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLL------------------RRHRR 201
+ A ++ ++E FG EV KLV V +L I + RR +
Sbjct: 70 LPTLAMDNEKALEPAFGAEVVKLVHDVRQLLRIGAIAGLVSPTDASITRKNEAEARRAQV 129
Query: 202 INVNQGTLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 253
+ + L + LA RL ++R + + +A+ETL I+ LA+RLG+W
Sbjct: 130 EALRKMLLAFAQDIRVVLIRLASRLQSLRWLAQTKRSAPEGMARETLDIYAPLANRLGIW 189
Query: 254 ALKAELEDLCFAVLQPQIFRKM 275
LK ELEDL F P ++++
Sbjct: 190 QLKWELEDLGFRFEDPDTYKRI 211
>gi|241663243|ref|YP_002981603.1| (p)ppGpp synthetase I SpoT/RelA [Ralstonia pickettii 12D]
gi|240865270|gb|ACS62931.1| (p)ppGpp synthetase I, SpoT/RelA [Ralstonia pickettii 12D]
Length = 741
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 92/139 (66%), Gaps = 9/139 (6%)
Query: 384 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 443
E L T + G++ +S R K +YSI+ KMR K++ +YD RA RV+V D
Sbjct: 231 EQLQKTLHDAGIQAEVSGRPKHIYSIWKKMRGKELDFADLYDVRAFRVIVDD-------- 282
Query: 444 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 503
I+ CY++L VH +W PI EFDDYI PK +GY SLHT V G DG ALEVQIRT++MH
Sbjct: 283 -IKDCYTVLGFVHHMWQPIPKEFDDYISRPKANGYMSLHTVVIGDDGRALEVQIRTREMH 341
Query: 504 EYAEHGLAAHWLYKETGNK 522
+AE+G+AAHW YKE GNK
Sbjct: 342 HFAEYGVAAHWRYKEAGNK 360
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 87/202 (43%), Gaps = 35/202 (17%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT--VVAGILHD 159
EQV +AI + TG+P +H T IL L VDT + A L
Sbjct: 17 EQVARAIEYLVANAADSVTLTGEPLESHARGTVAILEGL-------RVDTPSLQAAALFL 69
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLL------------------RRHRR 201
+ A ++ ++E FG EV KLV V +L I + RR +
Sbjct: 70 LPTLAMDNEKALEPAFGAEVVKLVHDVRQLLRIGAIAGLVSPTDASITRKNEAEARRAQV 129
Query: 202 INVNQGTLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 253
+ + L + LA RL ++R + + +A+ETL I+ LA+RLG+W
Sbjct: 130 EALRKMLLAFAQDIRVVLIRLASRLQSLRWLAQTKRSAPEGMARETLDIYAPLANRLGIW 189
Query: 254 ALKAELEDLCFAVLQPQIFRKM 275
LK ELEDL F P ++++
Sbjct: 190 QLKWELEDLGFRFEDPDTYKRI 211
>gi|421482790|ref|ZP_15930370.1| GTP pyrophosphokinase [Achromobacter piechaudii HLE]
gi|400199101|gb|EJO32057.1| GTP pyrophosphokinase [Achromobacter piechaudii HLE]
Length = 764
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 94/140 (67%), Gaps = 9/140 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+E +S R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L
Sbjct: 251 GIEAEVSGRPKHIYSIWNKMRVKRLDFAQMYDLRALRIIVED---------VRACYTALG 301
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH +W P+ EFDDYI PKP+GY+SLHT V DG EVQIRT++MH++AE+G+AAH
Sbjct: 302 LVHEMWTPLSDEFDDYISRPKPNGYRSLHTVVADDDGRPFEVQIRTREMHQFAEYGMAAH 361
Query: 514 WLYKETGNKLQSISSMDESD 533
W YKE G K +++ E D
Sbjct: 362 WRYKEAGAKGGQVAASSEYD 381
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 87/203 (42%), Gaps = 22/203 (10%)
Query: 90 GVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAV 149
G+D G + + +A+A+A GQ TG+P +H RILA L + RA
Sbjct: 24 GLDADGMALID-----QAVAWAIPRFEGQQALTGEPLASHGAGVVRILAALHTDAATRAA 78
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
+ A + + FG EVA+LV G L + + R+ G+
Sbjct: 79 ALLAALPTDLMAPAPALRNDPVATAFGAEVARLVQGTRALLRLGVVARQASDAEAESGSQ 138
Query: 210 GHEE-----------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+ LA RL +R + A A+ETL ++ LA+RLG+
Sbjct: 139 KEMQRKMLLAMAADLRIVLMRLASRLRTLRWHAESKAPCSIAFARETLDLYAPLANRLGI 198
Query: 253 WALKAELEDLCFAVLQPQIFRKM 275
W +K E+EDL F L+P ++++
Sbjct: 199 WQIKWEMEDLAFRFLEPDRYKQI 221
>gi|375264179|ref|YP_005021622.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio sp. EJY3]
gi|369839503|gb|AEX20647.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio sp. EJY3]
Length = 706
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 125/426 (29%), Positives = 199/426 (46%), Gaps = 106/426 (24%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++++ A+ AH GQ R +G+PY+ H + RILA + + ++T+ A +LHDV+
Sbjct: 21 EALRQSYVVARDAHEGQTRSSGEPYIIHPVAVSRILAEM-----RLDIETLQAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNM 221
+D S +EE+FG+ VA+LV GV S +++L R R+ E A+ M
Sbjct: 76 EDCDVSKEDLEEQFGNTVAELVDGV---SKLDKLKFRDRK----------EAQAENFRKM 122
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLA 280
A+ Q+ +I LA R + L A L+P R++ +
Sbjct: 123 ----------VLAMVQDIRVILIKLADRTHNMRTLGA---------LRPDKKRRIARETL 163
Query: 281 SMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILS 339
+++P +R+G I I +T ++ F EA+ P
Sbjct: 164 EIYAPLAHRLG----IHNI--------KTELEELGF--------------EALYP----- 192
Query: 340 DRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTL 399
R + L ++ K++ +K + + +E L +V L
Sbjct: 193 ---NRYRVLKEVVKTARGNRKEMIQR-----------IHSEIEGRL---------QDVGL 229
Query: 400 SSRL----KSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIV 455
SSR+ K+L+SI++KM+ K+ H + D A RVVV + CY +L V
Sbjct: 230 SSRVVGREKNLFSIYNKMKTKEQRFHTIMDIYAFRVVVDTAD---------TCYRVLGQV 280
Query: 456 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 515
H L+ P G DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A+ G+AAHW
Sbjct: 281 HSLYKPRPGRMKDYIAVPKANGYQSLHTSMVGPHGVPVEVQIRTEDMDQMADKGVAAHWS 340
Query: 516 YKETGN 521
YK+ G+
Sbjct: 341 YKDKGD 346
>gi|187929058|ref|YP_001899545.1| (p)ppGpp synthetase I SpoT/RelA [Ralstonia pickettii 12J]
gi|187725948|gb|ACD27113.1| (p)ppGpp synthetase I, SpoT/RelA [Ralstonia pickettii 12J]
Length = 741
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 92/139 (66%), Gaps = 9/139 (6%)
Query: 384 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 443
E L T + G++ +S R K +YSI+ KMR K++ +YD RA RV+V D
Sbjct: 231 EQLQKTLHDAGIQAEVSGRPKHIYSIWKKMRGKELDFADLYDVRAFRVIVDD-------- 282
Query: 444 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 503
I+ CY++L VH +W PI EFDDYI PK +GY SLHT V G DG ALEVQIRT++MH
Sbjct: 283 -IKDCYTVLGFVHHMWQPIPKEFDDYISRPKANGYMSLHTVVIGDDGRALEVQIRTREMH 341
Query: 504 EYAEHGLAAHWLYKETGNK 522
+AE+G+AAHW YKE GNK
Sbjct: 342 HFAEYGVAAHWRYKEAGNK 360
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 88/207 (42%), Gaps = 35/207 (16%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT--VVA 154
P EQV +AI + TG+P +H T IL L VDT + A
Sbjct: 12 PGSTAEQVARAIEYLAANAADSVTLTGEPLESHARGTIAILEGL-------RVDTPSLQA 64
Query: 155 GILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLL------------------ 196
L + A +S ++E FG EV KLV V +L I +
Sbjct: 65 AALFLLPTLAMDSEKALEPAFGAEVVKLVHDVRQLLRIGAIAGLVSPTDASITRKNEAEA 124
Query: 197 RRHRRINVNQGTLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 248
RR + + + L + LA RL ++R + + +A+ETL I+ LA+
Sbjct: 125 RRAQVEALRKMLLAFAQDIRVVMIRLASRLQSLRWLAQTKRSAPEGMARETLDIYAPLAN 184
Query: 249 RLGLWALKAELEDLCFAVLQPQIFRKM 275
RLG+W LK ELEDL F P ++++
Sbjct: 185 RLGIWQLKWELEDLGFRFEDPDTYKRI 211
>gi|410473818|ref|YP_006897099.1| GTP pyrophosphokinase [Bordetella parapertussis Bpp5]
gi|408443928|emb|CCJ50622.1| putative GTP pyrophosphokinase [Bordetella parapertussis Bpp5]
Length = 737
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 130/436 (29%), Positives = 196/436 (44%), Gaps = 83/436 (19%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
Q+ A A+A Q TG+P +H RILA L R V V+A + D+
Sbjct: 32 QLAHAAAWAWPRFEAQKALTGEPLASHAAGAVRILASLHTDQATR-VAAVLASLPADLNA 90
Query: 163 DACESLGS-IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNM 221
A + EFG EVA+LV G L + + R G+ +E+ ++
Sbjct: 91 PAPTLRNDPVASEFGVEVARLVQGALALLRLGIVARHASDSEAESGS--QKEMQRKM--- 145
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLAS 281
A+A + ++ LASRL AE C A
Sbjct: 146 ----------LLAMAADLRIVLMRLASRLQSLRWHAETRTPCAA---------------- 179
Query: 282 MWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
G++R + + PL R + M+DL F L
Sbjct: 180 --------GFARETLDLYT--PLANRLG--------IWQLKWEMEDL-----AFRFLEPE 216
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
R + + H L ++ +V ++A IA ++ +EAL + G+ +S
Sbjct: 217 RYK-QIAHLL-------EEKRVEREAFIA-EAIARMQEALARA---------GVVAEVSG 258
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L +VH +W P
Sbjct: 259 RPKHIYSIWNKMRLKGLDFSQMYDLRALRIIVDD---------VRACYTALGLVHEMWTP 309
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ EFDDYI PKP+GY+SLHT V G A EVQIRT++MH++AE+G+AAHW YKE G
Sbjct: 310 LPEEFDDYISRPKPNGYRSLHTVVTDAQGRAFEVQIRTREMHQFAEYGMAAHWRYKEAGA 369
Query: 522 KLQSISSMDESDIEAS 537
+ +++ E D + S
Sbjct: 370 RGGQVAASSEYDRQLS 385
>gi|409405788|ref|ZP_11254250.1| (p)ppGpp synthetase I [Herbaspirillum sp. GW103]
gi|386434337|gb|EIJ47162.1| (p)ppGpp synthetase I [Herbaspirillum sp. GW103]
Length = 750
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 88/133 (66%), Gaps = 9/133 (6%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+S R K +YSI++KMR K + ++YD RA RV+V D ++ CYS+L IVH +
Sbjct: 255 VSGRPKHIYSIWNKMRGKSIDFSELYDVRAFRVIVDD---------VKTCYSVLGIVHNI 305
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI EFDDYI PK +GYQSLHT V DG ALEVQIRT +MH +AE+G+AAHW YKE
Sbjct: 306 WTPIPEEFDDYISRPKQNGYQSLHTVVMAEDGRALEVQIRTHEMHHFAEYGVAAHWRYKE 365
Query: 519 TGNKLQSISSMDE 531
+G S DE
Sbjct: 366 SGGSNFSAQKYDE 378
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 77/182 (42%), Gaps = 34/182 (18%)
Query: 122 TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVV-AGILHDVVDDACESLGSIEEEFGDEVA 180
+G L + +L L + R A +LH +D+ +EE FG E+A
Sbjct: 45 SGQNALQFAVSVATVLTALNVDAATRIAGLAFEAQMLHPELDE------KLEERFGKEIA 98
Query: 181 KLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAV----- 235
+LV V +L + L + + V +G ++ A ++ +R + RAV
Sbjct: 99 ELVGNVRQLMRFHSLSFQPQHQEVLRGKNAAQQAAAQVETLRKMLLAMATDMRAVLVRLA 158
Query: 236 ----------------------AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
A++T ++ LA+RLG+W LK ELEDL F L+P ++
Sbjct: 159 SRVATLRYFAETKQENEASAQYARQTFDLYAPLANRLGIWQLKWELEDLSFRFLEPATYK 218
Query: 274 KM 275
++
Sbjct: 219 RI 220
>gi|319786299|ref|YP_004145774.1| RelA/SpoT family protein [Pseudoxanthomonas suwonensis 11-1]
gi|317464811|gb|ADV26543.1| RelA/SpoT family protein [Pseudoxanthomonas suwonensis 11-1]
Length = 722
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/126 (54%), Positives = 88/126 (69%), Gaps = 9/126 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G +S R K +YSI+ KM++K + + K+YD RA+RV+V D + CY+ L
Sbjct: 230 GFTAEISGRPKHIYSIWRKMQKKQLPLDKLYDLRAVRVMVAD---------VAACYAALG 280
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW P+ GEFDDYI PKP+GY SLHTAV GP+G LEVQIRT++MHE AE G+AAH
Sbjct: 281 VVHSLWAPVPGEFDDYIARPKPNGYASLHTAVVGPEGRTLEVQIRTREMHEQAELGVAAH 340
Query: 514 WLYKET 519
W YKET
Sbjct: 341 WRYKET 346
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
L+ +L MR LP + RA+AQ T I LA+RLG+W LK ELEDL F L P +R
Sbjct: 139 LSRQLARMRAAGGLPGEERRALAQLTRDIHAPLANRLGIWQLKWELEDLAFRFLDPDTYR 198
Query: 274 KMRADLASMWSPRNR 288
++ +L + R R
Sbjct: 199 RIAHELDESRADRER 213
>gi|254514119|ref|ZP_05126180.1| GTP pyrophosphokinase [gamma proteobacterium NOR5-3]
gi|219676362|gb|EED32727.1| GTP pyrophosphokinase [gamma proteobacterium NOR5-3]
Length = 744
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/138 (53%), Positives = 93/138 (67%), Gaps = 9/138 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+E +S R K +YSI+ KM+RK +G +VYD RALR++V P ++ CY+ L
Sbjct: 257 GIEFEVSGRSKHIYSIWRKMQRKGIGFSQVYDIRALRILV---------PELKDCYATLG 307
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW I EFDDYI +PK +GY+SLHTAV GP+G LEVQIRT +MHE AE G+ AH
Sbjct: 308 LVHGLWRNIPNEFDDYIASPKENGYRSLHTAVIGPEGKILEVQIRTHEMHEEAELGVCAH 367
Query: 514 WLYKETGNKLQSISSMDE 531
W YK T K S SS DE
Sbjct: 368 WRYKGTDTKRGSGSSYDE 385
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 24/176 (13%)
Query: 131 IHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLS 190
I + +ILA L + V+ ++AG+L+ V + + +E FG VA L+ GV R++
Sbjct: 71 IESAQILAEL-----RVGVNCLIAGLLYRAVREQRLEIRDVEARFGKVVADLLRGVLRMA 125
Query: 191 YINQLLR----------RHRRINVNQGTLGHEE--------LADRLHNMRTIYALPPAKA 232
I L + +R N+ Q + + LA+R +R + + +
Sbjct: 126 AIADLRNPSDTAVLGEAQRQRDNIRQMLVAIVDDVQVALIKLAERTCAIRAVKS-DKTRQ 184
Query: 233 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 288
VA++ ++ LA RLG+ LK ELEDL F L ++++ L R+R
Sbjct: 185 ELVARDVFDVYAPLAHRLGIGHLKWELEDLSFRYLYNDSYKRIAGLLDGKRLERDR 240
>gi|53725295|ref|YP_102788.1| GTP pyrophosphokinase [Burkholderia mallei ATCC 23344]
gi|67641369|ref|ZP_00440149.1| GTP diphosphokinase [Burkholderia mallei GB8 horse 4]
gi|254178309|ref|ZP_04884964.1| GTP pyrophosphokinase [Burkholderia mallei ATCC 10399]
gi|254199740|ref|ZP_04906106.1| GTP pyrophosphokinase [Burkholderia mallei FMH]
gi|254206062|ref|ZP_04912414.1| GTP pyrophosphokinase [Burkholderia mallei JHU]
gi|52428718|gb|AAU49311.1| GTP pyrophosphokinase [Burkholderia mallei ATCC 23344]
gi|147749336|gb|EDK56410.1| GTP pyrophosphokinase [Burkholderia mallei FMH]
gi|147753505|gb|EDK60570.1| GTP pyrophosphokinase [Burkholderia mallei JHU]
gi|160699348|gb|EDP89318.1| GTP pyrophosphokinase [Burkholderia mallei ATCC 10399]
gi|238522292|gb|EEP85737.1| GTP diphosphokinase [Burkholderia mallei GB8 horse 4]
Length = 745
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 237 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 287
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 288 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGIAAHW 347
Query: 515 LYKETGNK 522
YKE G +
Sbjct: 348 RYKEAGAR 355
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 83/197 (42%), Gaps = 37/197 (18%)
Query: 108 IAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLI--PSSGKRAVDTVVAGILHDVVDDA 164
+AF R H G R +G+ H T I+ L P + + A +A L D
Sbjct: 18 LAFV-REHAGDARLSSGERLADHAAGTSTIMQRLNVDPPATQAAALFALAPYLSD----- 71
Query: 165 CESLGSIEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE---------- 213
I E FGDEVA LVA V +L + + LR + V+ G E
Sbjct: 72 --PDKQIAEHFGDEVAHLVADVRKLLRLGTVSLRAVQSAPVDAGRDAQAERRAQIEALRK 129
Query: 214 ---------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 258
LA RL ++R A VA+ETL I+ LA+RLG+W LK E
Sbjct: 130 MLLAFAQDIRVVLIRLASRLQSLRYYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWE 189
Query: 259 LEDLCFAVLQPQIFRKM 275
LEDL F P ++++
Sbjct: 190 LEDLAFRFEDPVTYKRI 206
>gi|121599766|ref|YP_992868.1| GTP pyrophosphokinase [Burkholderia mallei SAVP1]
gi|167003092|ref|ZP_02268882.1| GTP pyrophosphokinase [Burkholderia mallei PRL-20]
gi|167894559|ref|ZP_02481961.1| GTP pyrophosphokinase [Burkholderia pseudomallei 7894]
gi|167919223|ref|ZP_02506314.1| GTP pyrophosphokinase [Burkholderia pseudomallei BCC215]
gi|254188580|ref|ZP_04895091.1| GTP diphosphokinase [Burkholderia pseudomallei Pasteur 52237]
gi|254297840|ref|ZP_04965293.1| GTP diphosphokinase [Burkholderia pseudomallei 406e]
gi|386861980|ref|YP_006274929.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1026b]
gi|403518435|ref|YP_006652568.1| GTP diphosphokinase [Burkholderia pseudomallei BPC006]
gi|418534127|ref|ZP_13099976.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1026a]
gi|121228576|gb|ABM51094.1| GTP pyrophosphokinase [Burkholderia mallei SAVP1]
gi|157807669|gb|EDO84839.1| GTP diphosphokinase [Burkholderia pseudomallei 406e]
gi|157936259|gb|EDO91929.1| GTP diphosphokinase [Burkholderia pseudomallei Pasteur 52237]
gi|243061342|gb|EES43528.1| GTP pyrophosphokinase [Burkholderia mallei PRL-20]
gi|385359986|gb|EIF65932.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1026a]
gi|385659108|gb|AFI66531.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1026b]
gi|403074077|gb|AFR15657.1| GTP diphosphokinase [Burkholderia pseudomallei BPC006]
Length = 745
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 237 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 287
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 288 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGIAAHW 347
Query: 515 LYKETGNK 522
YKE G +
Sbjct: 348 RYKEAGAR 355
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 83/197 (42%), Gaps = 37/197 (18%)
Query: 108 IAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLI--PSSGKRAVDTVVAGILHDVVDDA 164
+AF R H G R +G+ H T I+ L P + + A +A L D
Sbjct: 18 LAFV-REHAGDARLSSGERLADHAAGTSTIMQRLNVDPPATQAAALFALAPYLSD----- 71
Query: 165 CESLGSIEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE---------- 213
I E FGDEVA LVA V +L + + LR + V+ G E
Sbjct: 72 --PDKQIAEHFGDEVAHLVADVRKLLRLGTVSLRAAQSAPVDAGRDAQAERRAQIEALRK 129
Query: 214 ---------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 258
LA RL ++R A VA+ETL I+ LA+RLG+W LK E
Sbjct: 130 MLLAFAQDIRVVLIRLASRLQSLRYYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWE 189
Query: 259 LEDLCFAVLQPQIFRKM 275
LEDL F P ++++
Sbjct: 190 LEDLAFRFEDPVTYKRI 206
>gi|167816074|ref|ZP_02447754.1| GTP pyrophosphokinase [Burkholderia pseudomallei 91]
gi|418387544|ref|ZP_12967400.1| GTP pyrophosphokinase [Burkholderia pseudomallei 354a]
gi|418553592|ref|ZP_13118411.1| GTP pyrophosphokinase [Burkholderia pseudomallei 354e]
gi|385371430|gb|EIF76609.1| GTP pyrophosphokinase [Burkholderia pseudomallei 354e]
gi|385376264|gb|EIF80962.1| GTP pyrophosphokinase [Burkholderia pseudomallei 354a]
Length = 745
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 237 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 287
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 288 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGIAAHW 347
Query: 515 LYKETGNK 522
YKE G +
Sbjct: 348 RYKEAGAR 355
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 82/197 (41%), Gaps = 37/197 (18%)
Query: 108 IAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLI--PSSGKRAVDTVVAGILHDVVDDA 164
+AF R H G R +G+ H T I+ L P + + A +A L D
Sbjct: 18 LAFV-REHAGDARLSSGERLADHAAGTSTIMQRLNVDPPATQAAALFALAPYLSD----- 71
Query: 165 CESLGSIEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE---------- 213
I FGDEVA LVA V +L + + LR + V+ G E
Sbjct: 72 --PDKQIAGHFGDEVAHLVADVRKLLRLGTVSLRAAQSAPVDAGRDAQAERRAQIEALRK 129
Query: 214 ---------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 258
LA RL ++R A VA+ETL I+ LA+RLG+W LK E
Sbjct: 130 MLLAFAQDIRVVLIRLASRLQSLRYYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWE 189
Query: 259 LEDLCFAVLQPQIFRKM 275
LEDL F P ++++
Sbjct: 190 LEDLAFRFEDPVTYKRI 206
>gi|124385843|ref|YP_001026206.1| GTP pyrophosphokinase [Burkholderia mallei NCTC 10229]
gi|126448214|ref|YP_001080522.1| GTP pyrophosphokinase [Burkholderia mallei NCTC 10247]
gi|254358433|ref|ZP_04974706.1| GTP pyrophosphokinase [Burkholderia mallei 2002721280]
gi|124293863|gb|ABN03132.1| GTP diphosphokinase [Burkholderia mallei NCTC 10229]
gi|126241084|gb|ABO04177.1| GTP diphosphokinase [Burkholderia mallei NCTC 10247]
gi|148027560|gb|EDK85581.1| GTP pyrophosphokinase [Burkholderia mallei 2002721280]
Length = 745
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 237 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 287
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 288 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGIAAHW 347
Query: 515 LYKETGNK 522
YKE G +
Sbjct: 348 RYKEAGAR 355
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 83/197 (42%), Gaps = 37/197 (18%)
Query: 108 IAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLI--PSSGKRAVDTVVAGILHDVVDDA 164
+AF R H G R +G+ H T I+ L P + + A +A L D
Sbjct: 18 LAFV-REHAGDARLSSGERLADHAAGTSTIMQRLNVDPPATQAAALFALAPYLSD----- 71
Query: 165 CESLGSIEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE---------- 213
I E FGDEVA LVA V +L + + LR + V+ G E
Sbjct: 72 --PDKQIAEHFGDEVAHLVADVRKLLRLGTVSLRAAQSAPVDAGRDAQAERRAQIEALRK 129
Query: 214 ---------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 258
LA RL ++R A VA+ETL I+ LA+RLG+W LK E
Sbjct: 130 MLLAFAQDIRVVLIRLASRLQSLRYYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWE 189
Query: 259 LEDLCFAVLQPQIFRKM 275
LEDL F P ++++
Sbjct: 190 LEDLAFRFEDPVTYKRI 206
>gi|167911198|ref|ZP_02498289.1| GTP diphosphokinase [Burkholderia pseudomallei 112]
Length = 745
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 237 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 287
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 288 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 347
Query: 515 LYKETGNK 522
YKE G +
Sbjct: 348 RYKEAGAR 355
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 88/216 (40%), Gaps = 42/216 (19%)
Query: 89 DGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLI--PSSG 145
D + P +D +AF R H G R +G+ H T I+ L P +
Sbjct: 4 DSASTSAAPSLDD-----VLAFV-REHAGDARLSSGERLADHAAGTSTIMQRLNVDPPAT 57
Query: 146 KRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINV 204
+ A +A L D I E FGDEVA LVA V +L + + LR + V
Sbjct: 58 QAAALFALAPYLRD-------PDKQIAEHFGDEVAHLVADVRKLLRLGTVSLRAAQSAPV 110
Query: 205 NQGTLGHEE-------------------------LADRLHNMRTIYALPPAKARAVAQET 239
+ G E LA RL ++R A VA+ET
Sbjct: 111 DAGRDAQAERRAQIEALRKMLLAFAQDIRVVLIRLASRLQSLRYYAAAKIEPPPDVARET 170
Query: 240 LLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
L I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 171 LEIYAPLANRLGIWQLKWELEDLAFRFEDPVTYKRI 206
>gi|217423675|ref|ZP_03455176.1| GTP diphosphokinase [Burkholderia pseudomallei 576]
gi|217393533|gb|EEC33554.1| GTP diphosphokinase [Burkholderia pseudomallei 576]
Length = 774
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 266 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 316
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 317 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGIAAHW 376
Query: 515 LYKETGNK 522
YKE G +
Sbjct: 377 RYKEAGAR 384
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 83/197 (42%), Gaps = 37/197 (18%)
Query: 108 IAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLI--PSSGKRAVDTVVAGILHDVVDDA 164
+AF R H G R +G+ H T I+ L P + + A +A L D
Sbjct: 47 LAFV-REHAGDARLSSGERLADHAAGTSTIMQRLNVDPPATQAAALFALAPYLSD----- 100
Query: 165 CESLGSIEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE---------- 213
I E FGDEVA LVA V +L + + LR + V+ G E
Sbjct: 101 --PDKQIAEHFGDEVAHLVADVRKLLRLGTVSLRAAQSAPVDAGRDAQAERRAQIEALRK 158
Query: 214 ---------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 258
LA RL ++R A VA+ETL I+ LA+RLG+W LK E
Sbjct: 159 MLLAFAQDIRVVLIRLASRLQSLRYYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWE 218
Query: 259 LEDLCFAVLQPQIFRKM 275
LEDL F P ++++
Sbjct: 219 LEDLAFRFEDPVTYKRI 235
>gi|118580813|ref|YP_902063.1| (p)ppGpp synthetase I SpoT/RelA [Pelobacter propionicus DSM 2379]
gi|118503523|gb|ABL00006.1| (p)ppGpp synthetase I, SpoT/RelA [Pelobacter propionicus DSM 2379]
Length = 717
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 119/441 (26%), Positives = 191/441 (43%), Gaps = 105/441 (23%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA + + H GQ R +G+PY+ H + +LA L + V +V+ G LHD ++D
Sbjct: 23 IRKAYVYCAKVHQGQTRLSGEPYIIHPMEVAGLLAEL-----RLDVASVITGFLHDTIED 77
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRT 223
+ + FGDEVA L D + +
Sbjct: 78 TLTTAEELTSLFGDEVAT--------------------------------LVDGVTKISK 105
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF-RKMRADLASM 282
I+ A+++A +L+ S+ R+ L L L ++ QP++ R + + +
Sbjct: 106 IHFKTKAESQAENFRKMLLAMSIDIRVILVKLADRLHNMRTLEFQPELKQRSIAQETMDI 165
Query: 283 WSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
++P NR+G S V + LS R
Sbjct: 166 YAPIANRLGISW-------------------------------------IKVELEDLSFR 188
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
+ DLA+ +K+ + +A ++ V ++ + G++ +S
Sbjct: 189 YLNPEIYFDLARKISLKKRER---EAYVSEAKTVIADKLGQH----------GIKGEVSG 235
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K LYSI+ KM ++V + ++YD ALR++V D ++ CY +L ++H W P
Sbjct: 236 RSKHLYSIYRKMLARNVELDEIYDLIALRILVDD---------VRDCYEVLGVIHSAWKP 286
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
I G F DYI PK + YQSLHT V GP G +EVQIRT +MH A+ G+AAHW YKE
Sbjct: 287 IPGRFKDYIAMPKGNMYQSLHTTVIGPHGDRMEVQIRTHEMHNVADAGIAAHWKYKEG-- 344
Query: 522 KLQSISSMDESDIEASSSLSK 542
DE D++ S L +
Sbjct: 345 -----KGYDERDVKRFSWLRQ 360
>gi|78066085|ref|YP_368854.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia sp. 383]
gi|77966830|gb|ABB08210.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia sp. 383]
Length = 744
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 238 IQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYAVLGI 288
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 289 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 348
Query: 515 LYKETGNK 522
YKE G +
Sbjct: 349 RYKEAGAR 356
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 89/208 (42%), Gaps = 42/208 (20%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLI--PSSGKRAVDTVV 153
P F+D +AF R G R +G+ H T I+ L PS+ + A V+
Sbjct: 13 PSFDD-----VLAFV-RERAGDVRLSSGELLADHSAGTASIMRTLNVDPSAMQAAALFVL 66
Query: 154 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHE 212
L D + + E FGDEVA+LV+ V +L + + LR + + G E
Sbjct: 67 TPHLSDPERE-------LTERFGDEVARLVSDVRKLLRLGTVSLRAAQNAVPDAGRDAAE 119
Query: 213 E-------------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 247
E LA RL ++R A VA+ETL I+ LA
Sbjct: 120 ERRTQIEALRKMLLSFAQDIRVVLIRLASRLQSLRYYAAAKIDPPPDVARETLEIYAPLA 179
Query: 248 SRLGLWALKAELEDLCFAVLQPQIFRKM 275
+RLG+W LK ELEDL F P ++++
Sbjct: 180 NRLGIWQLKWELEDLAFRFEDPVTYKRI 207
>gi|260892286|ref|YP_003238383.1| (p)ppGpp synthetase I SpoT/RelA [Ammonifex degensii KC4]
gi|260864427|gb|ACX51533.1| (p)ppGpp synthetase I, SpoT/RelA [Ammonifex degensii KC4]
Length = 710
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/214 (41%), Positives = 128/214 (59%), Gaps = 16/214 (7%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P N+ ++KA FA+ H GQ R +G+P+L+H + RILA L + +T+VAG+
Sbjct: 16 PGVNEALLRKAFDFAQAKHAGQRRFSGEPFLSHPVAVARILAELELDT-----ETIVAGL 70
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRRINVNQGT-- 208
LHDVV+D +L IE EFG E+A LV GV++LS + Q R++ V
Sbjct: 71 LHDVVEDTGTTLEEIEHEFGAEIAALVDGVTKLSRLQFRSQEEQQAENLRKMFVAMAKDV 130
Query: 209 -LGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL 267
+ +LADRLHN+RT+ LPP K RA+A+ETL I+ LA RLG++ LK ELEDL F L
Sbjct: 131 RVVLIKLADRLHNLRTLQYLPPEKQRAIAKETLEIFAPLAHRLGIYRLKWELEDLAFRYL 190
Query: 268 QPQIFRKMRADLASMWSPRNRVGYSRRITTIVSS 301
+P+ +R++ A +A + R Y+R + I+
Sbjct: 191 EPERYRELAAKVAKTRAAREE--YTRELIAILQK 222
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 81/135 (60%), Gaps = 9/135 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ L R K+LYSI+ KM R ++YD +R +V ++ CY++L
Sbjct: 228 GIKAELMGRPKNLYSIYQKMLRDGKEYSEIYDRTGIRALV---------ETVRDCYAVLG 278
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW P+ G F DYI PK + YQSLHT V GP G +EVQIRT +MH AE+G+AAH
Sbjct: 279 VVHTLWKPVPGRFKDYIAMPKENMYQSLHTTVIGPQGEPVEVQIRTYEMHRTAEYGIAAH 338
Query: 514 WLYKETGNKLQSISS 528
W YKE + + + +
Sbjct: 339 WRYKEGQTRDKQLEA 353
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 15/109 (13%)
Query: 710 SMEASINNKVRLLRTMLRWEEQLR-SEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGE 768
+ + + K LR +L W +++R + + + K+ V +VV V P G+
Sbjct: 346 TRDKQLEAKFAWLRELLEWVQEMRDAREFMERLKID----------VFSDVVFVFTPKGD 395
Query: 769 IMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
++ L +G+ D A + VG K VNG+LV + +LK GDIVE+
Sbjct: 396 VVELPAGAVPLDFAYRIHTEVGHRYKGAKVNGRLVPLDYQLKTGDIVEI 444
>gi|167582119|ref|ZP_02374993.1| GTP pyrophosphokinase [Burkholderia thailandensis TXDOH]
Length = 747
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 239 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 289
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 290 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 349
Query: 515 LYKETGNK 522
YKE G +
Sbjct: 350 RYKEAGAR 357
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 83/197 (42%), Gaps = 37/197 (18%)
Query: 108 IAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLI--PSSGKRAVDTVVAGILHDVVDDA 164
+AF R H G R +G+ H T I+ L P + + A +A L D
Sbjct: 20 LAFV-REHAGDARLPSGELLADHATGTSTIMQRLNVDPPATQAAALFALAPYLSD----- 73
Query: 165 CESLGSIEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE---------- 213
I E FGDEVA LV V +L + + LR + + V+ G E
Sbjct: 74 --PEKQIAERFGDEVAHLVTDVRKLLRLGTVSLRAAQSVPVDAGRDAQAERRAQIEALRK 131
Query: 214 ---------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 258
LA RL ++R A VA+ETL I+ LA+RLG+W LK E
Sbjct: 132 MLLAFAQDIRVVLIRLASRLQSLRHYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWE 191
Query: 259 LEDLCFAVLQPQIFRKM 275
LEDL F P ++++
Sbjct: 192 LEDLAFRFEDPVTYKRI 208
>gi|53719559|ref|YP_108545.1| GTP pyrophosphokinase [Burkholderia pseudomallei K96243]
gi|126439059|ref|YP_001058750.1| GTP diphosphokinase [Burkholderia pseudomallei 668]
gi|126454760|ref|YP_001066004.1| GTP diphosphokinase [Burkholderia pseudomallei 1106a]
gi|134282417|ref|ZP_01769122.1| GTP diphosphokinase [Burkholderia pseudomallei 305]
gi|167738853|ref|ZP_02411627.1| GTP diphosphokinase [Burkholderia pseudomallei 14]
gi|167845982|ref|ZP_02471490.1| GTP diphosphokinase [Burkholderia pseudomallei B7210]
gi|167902962|ref|ZP_02490167.1| GTP diphosphokinase [Burkholderia pseudomallei NCTC 13177]
gi|237812014|ref|YP_002896465.1| GTP diphosphokinase [Burkholderia pseudomallei MSHR346]
gi|242314558|ref|ZP_04813574.1| GTP diphosphokinase [Burkholderia pseudomallei 1106b]
gi|254180006|ref|ZP_04886605.1| GTP diphosphokinase [Burkholderia pseudomallei 1655]
gi|254197483|ref|ZP_04903905.1| GTP diphosphokinase [Burkholderia pseudomallei S13]
gi|254260414|ref|ZP_04951468.1| GTP diphosphokinase [Burkholderia pseudomallei 1710a]
gi|418541171|ref|ZP_13106668.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1258a]
gi|418547411|ref|ZP_13112570.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1258b]
gi|52209973|emb|CAH35945.1| GTP pyrophosphokinase [Burkholderia pseudomallei K96243]
gi|126218552|gb|ABN82058.1| GTP diphosphokinase [Burkholderia pseudomallei 668]
gi|126228402|gb|ABN91942.1| GTP diphosphokinase [Burkholderia pseudomallei 1106a]
gi|134246455|gb|EBA46544.1| GTP diphosphokinase [Burkholderia pseudomallei 305]
gi|169654224|gb|EDS86917.1| GTP diphosphokinase [Burkholderia pseudomallei S13]
gi|184210546|gb|EDU07589.1| GTP diphosphokinase [Burkholderia pseudomallei 1655]
gi|237506121|gb|ACQ98439.1| GTP diphosphokinase [Burkholderia pseudomallei MSHR346]
gi|242137797|gb|EES24199.1| GTP diphosphokinase [Burkholderia pseudomallei 1106b]
gi|254219103|gb|EET08487.1| GTP diphosphokinase [Burkholderia pseudomallei 1710a]
gi|385358680|gb|EIF64665.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1258a]
gi|385361196|gb|EIF67084.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1258b]
Length = 745
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 237 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 287
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 288 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 347
Query: 515 LYKETGNK 522
YKE G +
Sbjct: 348 RYKEAGAR 355
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 83/197 (42%), Gaps = 37/197 (18%)
Query: 108 IAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLI--PSSGKRAVDTVVAGILHDVVDDA 164
+AF R H G R +G+ H T I+ L P + + A +A L D
Sbjct: 18 LAFV-REHAGDARLSSGERLADHAAGTSTIMQRLNVDPPATQAAALFALAPYLSD----- 71
Query: 165 CESLGSIEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE---------- 213
I E FGDEVA LVA V +L + + LR + V+ G E
Sbjct: 72 --PDKQIAEHFGDEVAHLVADVRKLLRLGTVSLRAAQSAPVDAGRDAQAERRAQIEALRK 129
Query: 214 ---------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 258
LA RL ++R A VA+ETL I+ LA+RLG+W LK E
Sbjct: 130 MLLAFAQDIRVVLIRLASRLQSLRYYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWE 189
Query: 259 LEDLCFAVLQPQIFRKM 275
LEDL F P ++++
Sbjct: 190 LEDLAFRFEDPVTYKRI 206
>gi|76808714|ref|YP_333288.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1710b]
gi|76578167|gb|ABA47642.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1710b]
Length = 716
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 208 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 258
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 259 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 318
Query: 515 LYKETGNK 522
YKE G +
Sbjct: 319 RYKEAGAR 326
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 60/131 (45%), Gaps = 26/131 (19%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE---------------- 213
I E FGDEVA LVA V +L + + LR + V+ G E
Sbjct: 47 IAEHFGDEVAHLVADVRKLLRLGTVSLRAAQSAPVDAGRDAQAERRAQIEALRKMLLAFA 106
Query: 214 ---------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 264
LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 107 QDIRVVLIRLASRLQSLRYYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWELEDLAF 166
Query: 265 AVLQPQIFRKM 275
P ++++
Sbjct: 167 RFEDPVTYKRI 177
>gi|307730403|ref|YP_003907627.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia sp. CCGE1003]
gi|307584938|gb|ADN58336.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia sp. CCGE1003]
Length = 747
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/180 (45%), Positives = 110/180 (61%), Gaps = 19/180 (10%)
Query: 348 LHDLAKSSEA----QKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 402
L DLA E ++ AK++ + + S VA E L++EL + + +S R
Sbjct: 192 LEDLAFRFEEPVVYKRIAKLLDEKRVERESYVAQAIERLQQELAAAN-----IRAEVSGR 246
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 247 PKHIYSIWRKMRGKELDFAELYDVRAFRVIV---------PDIKDCYTVLGIVHNLWQPV 297
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
EFDDYI PKP+GY+SLHT V G DG A EVQIRT MH++AE+G+AAHW YKE G +
Sbjct: 298 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTHDMHQFAEYGVAAHWRYKEAGTR 357
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 26/131 (19%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYIN------------------QLLRRHRRINVNQGTLGHE 212
I + FG+EVA+LV V +L + Q RR + + + L
Sbjct: 78 IADNFGEEVAQLVGDVRKLLRLGTVSLRAAQNAMPEAGRDAQAARRAQVEALRKMLLAFA 137
Query: 213 E--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 264
+ LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 138 QDIRVVLIRLASRLQSLRYYAAAKLTPTPDVARETLDIYAPLANRLGIWQLKWELEDLAF 197
Query: 265 AVLQPQIFRKM 275
+P +++++
Sbjct: 198 RFEEPVVYKRI 208
>gi|116689495|ref|YP_835118.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia cenocepacia HI2424]
gi|116647584|gb|ABK08225.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia cenocepacia HI2424]
Length = 745
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 239 IQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYAVLGI 289
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 290 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 349
Query: 515 LYKETGNK 522
YKE G +
Sbjct: 350 RYKEAGAR 357
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 59/132 (44%), Gaps = 27/132 (20%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQLLRR--HRRINVNQGTLGHEE--------------- 213
+ E FGDEVA+LV+ V +L + + R + G EE
Sbjct: 77 LTERFGDEVARLVSDVRKLLRLGTVSLRAAQNAAKPDSGRDAAEERRTQIEALRKMLLAF 136
Query: 214 ----------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLC 263
LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL
Sbjct: 137 AQDIRVVLIRLASRLQSLRYYAAAKLDPPPDVARETLEIYAPLANRLGIWQLKWELEDLA 196
Query: 264 FAVLQPQIFRKM 275
F P ++++
Sbjct: 197 FRFEDPVTYKRI 208
>gi|421865372|ref|ZP_16297052.1| GTP pyrophosphokinase ppGpp synthetase I [Burkholderia cenocepacia
H111]
gi|444361037|ref|ZP_21162189.1| RelA/SpoT family protein [Burkholderia cenocepacia BC7]
gi|444365636|ref|ZP_21165760.1| RelA/SpoT family protein [Burkholderia cenocepacia K56-2Valvano]
gi|358074835|emb|CCE47930.1| GTP pyrophosphokinase ppGpp synthetase I [Burkholderia cenocepacia
H111]
gi|443598684|gb|ELT67015.1| RelA/SpoT family protein [Burkholderia cenocepacia BC7]
gi|443605805|gb|ELT73627.1| RelA/SpoT family protein [Burkholderia cenocepacia K56-2Valvano]
Length = 744
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 238 IQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYAVLGI 288
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 289 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 348
Query: 515 LYKETGNK 522
YKE G +
Sbjct: 349 RYKEAGAR 356
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 61/131 (46%), Gaps = 26/131 (19%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE---------------- 213
+ E FGDEVA+LV+ V +L + + LR + + G EE
Sbjct: 77 LTERFGDEVARLVSDVRKLLRLGTVSLRAAQNAKPDSGRDAAEERRTQIEALRKMLLAFA 136
Query: 214 ---------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 264
LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 137 QDIRVVLIRLASRLQSLRYYAAAKLDPPPDVARETLEIYAPLANRLGIWQLKWELEDLAF 196
Query: 265 AVLQPQIFRKM 275
P ++++
Sbjct: 197 RFEDPVTYKRI 207
>gi|170732801|ref|YP_001764748.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia cenocepacia MC0-3]
gi|169816043|gb|ACA90626.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia cenocepacia MC0-3]
Length = 745
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 239 IQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYAVLGI 289
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 290 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 349
Query: 515 LYKETGNK 522
YKE G +
Sbjct: 350 RYKEAGAR 357
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 59/132 (44%), Gaps = 27/132 (20%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQLLRR--HRRINVNQGTLGHEE--------------- 213
+ E FGDEVA+LV+ V +L + + R + G EE
Sbjct: 77 LTERFGDEVARLVSDVRKLLRLGTVGLRAAQNAAKPDSGRDAAEERRTQIEALRKMLLAF 136
Query: 214 ----------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLC 263
LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL
Sbjct: 137 AQDIRVVLIRLASRLQSLRYYAAAKLDPPPDVARETLEIYAPLANRLGIWQLKWELEDLA 196
Query: 264 FAVLQPQIFRKM 275
F P ++++
Sbjct: 197 FRFEDPVTYKRI 208
>gi|254245610|ref|ZP_04938931.1| Guanosine polyphosphate pyrophosphohydrolase/synthetase
[Burkholderia cenocepacia PC184]
gi|124870386|gb|EAY62102.1| Guanosine polyphosphate pyrophosphohydrolase/synthetase
[Burkholderia cenocepacia PC184]
Length = 745
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 239 IQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYAVLGI 289
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 290 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 349
Query: 515 LYKETGNK 522
YKE G +
Sbjct: 350 RYKEAGAR 357
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 83/206 (40%), Gaps = 37/206 (17%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P F+D +AF + +G+ H T I+ ML + A+ +
Sbjct: 13 PSFDD-----VLAFVRERAGDARLSSGELLADHSAGTAAIMRML--NVDPHAMQAAALFV 65
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRR--HRRINVNQGTLGHEE- 213
L + D L E FGDEVA+LV+ V +L + + R + G EE
Sbjct: 66 LTPHLSDPEREL---TERFGDEVARLVSDVRKLLRLGTVSLRAAQNAAKPDSGRDAAEER 122
Query: 214 ------------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 249
LA RL ++R A VA+ETL I+ LA+R
Sbjct: 123 RTQIEALRKMLLAFAQDIRVVLIRLASRLQSLRYYAAAKLDPPPDVARETLEIYAPLANR 182
Query: 250 LGLWALKAELEDLCFAVLQPQIFRKM 275
LG+W LK ELEDL F P ++++
Sbjct: 183 LGIWQLKWELEDLAFRFEDPVTYKRI 208
>gi|186476317|ref|YP_001857787.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia phymatum STM815]
gi|184192776|gb|ACC70741.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia phymatum STM815]
Length = 746
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 88/128 (68%), Gaps = 9/128 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
++ +S R K +YSI+ KMR K + ++YD RA RV+V P I+ CY++L I
Sbjct: 239 IKAEVSGRPKHIYSIWRKMRGKQLDFSELYDVRAFRVIV---------PDIKDCYTVLGI 289
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 290 VHNLWQPVPREFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 349
Query: 515 LYKETGNK 522
YKE G +
Sbjct: 350 RYKEAGTR 357
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 94/208 (45%), Gaps = 42/208 (20%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVV 153
P F D A+AF R H G+ R +G+P H T I+ L VD V+
Sbjct: 14 PSFED-----ALAFV-RDHAGEARLSSGEPLAEHAAGTAAIMRTL-------NVDPPAVL 60
Query: 154 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH-------------- 199
A L + +I + FG+EVA+LV+ V +L + + R
Sbjct: 61 AAALFSLTPHLQNPEQTIADNFGEEVAQLVSDVRKLLRLGTVSMRAAQNAMPEAGRDAQA 120
Query: 200 -RRINVN---QGTLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 247
RR+ V + L + LA RL ++R A + VA+ETL I+ LA
Sbjct: 121 ARRVQVEALRKMLLAFAQDIRVVLIRLASRLQSLRYYAAAKITPSPDVARETLDIYAPLA 180
Query: 248 SRLGLWALKAELEDLCFAVLQPQIFRKM 275
+RLG+W LK ELEDL F +PQ ++++
Sbjct: 181 NRLGIWQLKWELEDLAFRFEEPQTYKRI 208
>gi|254252559|ref|ZP_04945877.1| Guanosine polyphosphate pyrophosphohydrolase [Burkholderia dolosa
AUO158]
gi|124895168|gb|EAY69048.1| Guanosine polyphosphate pyrophosphohydrolase [Burkholderia dolosa
AUO158]
Length = 744
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 94/144 (65%), Gaps = 14/144 (9%)
Query: 379 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 438
E L++EL + + +S R K +YSI+ KMR K++ ++YD RA RV+V
Sbjct: 227 ERLQRELADAN-----IHADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV----- 276
Query: 439 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 498
P I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIR
Sbjct: 277 ----PDIKDCYAVLGIVHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIR 332
Query: 499 TQKMHEYAEHGLAAHWLYKETGNK 522
TQ MH +AE+G+AAHW YKE G +
Sbjct: 333 TQDMHRFAEYGVAAHWRYKEAGTR 356
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 64/134 (47%), Gaps = 32/134 (23%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQLLRR---------------HRRINVN---QGTLGHE 212
+ E FGDEVA+LV+ V +L + + R RR + + L
Sbjct: 77 LTEHFGDEVARLVSDVRKLLRLGTVSLRVAQNAMPGVGRDAAAERRAQIEALRKMLLAFA 136
Query: 213 E--------LADRLHNMRTIYAL---PPAKARAVAQETLLIWCSLASRLGLWALKAELED 261
+ LA RL ++R A PP + VA+ETL I+ LA+RLG+W LK ELED
Sbjct: 137 QDIRVVLIRLASRLQSLRYYAAAKLDPPPE---VARETLEIYAPLANRLGIWQLKWELED 193
Query: 262 LCFAVLQPQIFRKM 275
L F P ++++
Sbjct: 194 LAFRFEDPVTYKRI 207
>gi|206559847|ref|YP_002230611.1| GTP pyrophosphokinase [Burkholderia cenocepacia J2315]
gi|198035888|emb|CAR51779.1| GTP pyrophosphokinase [Burkholderia cenocepacia J2315]
Length = 727
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 221 IQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYAVLGI 271
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 272 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 331
Query: 515 LYKETGNK 522
YKE G +
Sbjct: 332 RYKEAGAR 339
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 61/131 (46%), Gaps = 26/131 (19%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE---------------- 213
+ E FGDEVA+LV+ V +L + + LR + + G EE
Sbjct: 60 LTERFGDEVARLVSDVRKLLRLGTVSLRAAQNAKPDSGRDAAEERRTQIEALRKMLLAFA 119
Query: 214 ---------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 264
LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 120 QDIRVVLIRLASRLQSLRYYAAAKLDPPPDVARETLEIYAPLANRLGIWQLKWELEDLAF 179
Query: 265 AVLQPQIFRKM 275
P ++++
Sbjct: 180 RFEDPVTYKRI 190
>gi|107022546|ref|YP_620873.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia cenocepacia AU 1054]
gi|105892735|gb|ABF75900.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia cenocepacia AU 1054]
Length = 745
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 239 IQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYAVLGI 289
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 290 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 349
Query: 515 LYKETGNK 522
YKE G +
Sbjct: 350 RYKEAGAR 357
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 59/132 (44%), Gaps = 27/132 (20%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQLLRR--HRRINVNQGTLGHEE--------------- 213
+ E FGDEVA+LV+ V +L + + R + G EE
Sbjct: 77 LTERFGDEVARLVSDVRKLLRLGTVSLRAAQNAAKPDSGRDAAEERRTQIEALRKMLLAF 136
Query: 214 ----------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLC 263
LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL
Sbjct: 137 AQDIRVVLIRLASRLQSLRYYAAAKLDPPPGVARETLEIYAPLANRLGIWQLKWELEDLA 196
Query: 264 FAVLQPQIFRKM 275
F P ++++
Sbjct: 197 FRFEDPVTYKRI 208
>gi|149374702|ref|ZP_01892476.1| GTP pyrophosphokinase [Marinobacter algicola DG893]
gi|149361405|gb|EDM49855.1| GTP pyrophosphokinase [Marinobacter algicola DG893]
Length = 745
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/179 (45%), Positives = 112/179 (62%), Gaps = 19/179 (10%)
Query: 346 KFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKS 405
++LH+ A +K AK++ + + S + K+ L+++ G++ LS R K
Sbjct: 216 RYLHETA----YKKIAKLLDEKRLDRESYIKRVITTIKDELVAS----GIDGELSGRAKH 267
Query: 406 LYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGE 465
+YSI+ KMRRK + +VYD RA+R++V P ++ CY+ L IVH LW I E
Sbjct: 268 IYSIWRKMRRKGIDFSQVYDVRAVRILV---------PEVRDCYAALGIVHTLWRHIPNE 318
Query: 466 FDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET--GNK 522
FDDY+ NPK +GYQSLHTAV GP+G +EVQIRTQ MHE AE G+ AHWLYK T GN+
Sbjct: 319 FDDYVANPKENGYQSLHTAVIGPEGKVMEVQIRTQAMHEEAELGVCAHWLYKGTDKGNR 377
Score = 62.8 bits (151), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 92/196 (46%), Gaps = 29/196 (14%)
Query: 151 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL--------------- 195
++VA IL+ V + L I +EFGDEVA L+ GV +++ I+ +
Sbjct: 84 SLVAAILYRAVREERIPLEKIRKEFGDEVAGLIDGVQQMAAISSIHHPLKGNVLGQTEGQ 143
Query: 196 ---LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+R+ ++ + +LA+R +R + P K VA+E I+ LA RLG+
Sbjct: 144 LDNVRKMLVTMIDDVRVALIKLAERTCAIRAVKNAPEEKRMRVAREVFDIYAPLAHRLGI 203
Query: 253 WALKAELEDLCFAVLQPQIFRKMRADLASMWSPR--NRVGYSRRITTIVSSPPLDERTAS 310
+K ELEDL F L ++K +A + + +R Y +R+ T + DE AS
Sbjct: 204 GHIKWELEDLSFRYLHETAYKK----IAKLLDEKRLDRESYIKRVITTIK----DELVAS 255
Query: 311 D-DESFTTFDEHVLSM 325
D + +H+ S+
Sbjct: 256 GIDGELSGRAKHIYSI 271
>gi|293603983|ref|ZP_06686396.1| GTP diphosphokinase [Achromobacter piechaudii ATCC 43553]
gi|292817587|gb|EFF76655.1| GTP diphosphokinase [Achromobacter piechaudii ATCC 43553]
Length = 769
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 94/140 (67%), Gaps = 9/140 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L
Sbjct: 251 GIDAEVSGRPKHIYSIWNKMRVKRLDFAQMYDLRALRIIVED---------VRACYTALG 301
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH +W P+ EFDDYI PKP+GY+SLHT V DG EVQIRT++MH++AE+G+AAH
Sbjct: 302 LVHEMWTPLSNEFDDYISRPKPNGYRSLHTVVADDDGRPFEVQIRTREMHQFAEYGMAAH 361
Query: 514 WLYKETGNKLQSISSMDESD 533
W YKE G K +++ E D
Sbjct: 362 WRYKEAGAKGGQVAASSEYD 381
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 22/203 (10%)
Query: 90 GVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAV 149
G+D G + + +A+A+A GQ TG+P +H RILA L + RA
Sbjct: 24 GLDADGVAL-----IDRAVAWAIPRFEGQHALTGEPLASHGAGVVRILAALHTDAATRAA 78
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
+ A + + FG EVA+LV G L + + R+ + G+
Sbjct: 79 ALLAALPTDLMAPAPALRNDPVAAAFGAEVARLVQGTRALLRLGVVARQASDVEAESGSQ 138
Query: 210 GHEE-----------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+ LA RL +R + A+ETL ++ LA+RLG+
Sbjct: 139 KEMQRKMLLAMAADLRIVLMRLASRLRTLRWHAESKAPCSTDFARETLDLYAPLANRLGI 198
Query: 253 WALKAELEDLCFAVLQPQIFRKM 275
W +K E+EDL F L+P ++++
Sbjct: 199 WQIKWEMEDLSFRFLEPDRYKQI 221
>gi|295677049|ref|YP_003605573.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia sp. CCGE1002]
gi|295436892|gb|ADG16062.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia sp. CCGE1002]
Length = 747
Score = 147 bits (371), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 110/180 (61%), Gaps = 19/180 (10%)
Query: 348 LHDLAKSSEA----QKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 402
L DLA E ++ AK++ + + S VA E L++EL + + +S R
Sbjct: 192 LEDLAFRFEEPDTYKRIAKLLDEKRVERESYVAQAIERLQQELAAAH-----IRAEVSGR 246
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K +YSI+ KMR K + ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 247 PKHIYSIWRKMRGKQLDFAELYDVRAFRVIV---------PDIKDCYTVLGIVHNLWQPV 297
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW YKE G +
Sbjct: 298 RKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHWRYKEAGAR 357
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 89/199 (44%), Gaps = 37/199 (18%)
Query: 106 KAIAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLI--PSSGKRAVDTVVAGILHDVVD 162
+A+AF R H G+ R +G+ H T I+ L P + A + LHD
Sbjct: 18 EAMAFV-REHAGEVRLSSGELLADHAAGTASIMRKLNVDPPAVLAAALFALTPHLHD--- 73
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYIN------------------QLLRRHRRINV 204
E + I + FG+EVA+LV V +L + Q RR + +
Sbjct: 74 --PERV--IADNFGEEVAQLVGDVRKLLRLGTVSLRAAQNAMPEAGRDAQAARRAQVEAL 129
Query: 205 NQGTLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 256
+ L + LA RL ++R A + VA+ETL I+ LA+RLG+W LK
Sbjct: 130 RKMLLAFAQDIRVVLIRLASRLQSLRYYAAAKITPSPDVARETLDIYAPLANRLGIWQLK 189
Query: 257 AELEDLCFAVLQPQIFRKM 275
ELEDL F +P ++++
Sbjct: 190 WELEDLAFRFEEPDTYKRI 208
>gi|167719851|ref|ZP_02403087.1| GTP diphosphokinase [Burkholderia pseudomallei DM98]
Length = 745
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 237 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 287
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 288 VHYLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 347
Query: 515 LYKETGNK 522
YKE G +
Sbjct: 348 RYKEAGAR 355
Score = 59.3 bits (142), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 83/197 (42%), Gaps = 37/197 (18%)
Query: 108 IAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLI--PSSGKRAVDTVVAGILHDVVDDA 164
+AF R H G R +G+ H T I+ L P + + A +A L D
Sbjct: 18 LAFV-RKHAGDARLSSGERLADHAAGTSTIMQRLNVDPPATQAAALFALAPYLSD----- 71
Query: 165 CESLGSIEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE---------- 213
I E FGDEVA LVA V +L + + LR + V+ G E
Sbjct: 72 --PDKQIAEHFGDEVAHLVADVRKLLRLGTVSLRAAQSAPVDAGRDAQAERRAQIEALRK 129
Query: 214 ---------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 258
LA RL ++R A VA+ETL I+ LA+RLG+W LK E
Sbjct: 130 MLLAFAQDIRVVLIRLASRLQSLRYYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWE 189
Query: 259 LEDLCFAVLQPQIFRKM 275
LEDL F P ++++
Sbjct: 190 LEDLAFRFEDPVTYKRI 206
>gi|389798715|ref|ZP_10201725.1| RelA/SpoT family (p)ppGpp synthetase [Rhodanobacter sp. 116-2]
gi|388444397|gb|EIM00510.1| RelA/SpoT family (p)ppGpp synthetase [Rhodanobacter sp. 116-2]
Length = 710
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 109/308 (35%), Positives = 138/308 (44%), Gaps = 98/308 (31%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR A P + +A+A+ T I LA+RLG+W LK ELEDL FR
Sbjct: 132 LARQLARMRAAPARPEGERQALARLTRDIHAPLANRLGIWQLKWELEDLA--------FR 183
Query: 274 KMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVV 333
++ D RRI + LDER A
Sbjct: 184 YLQPD------------TYRRIANL-----LDERRAD----------------------- 203
Query: 334 PFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIP 393
R F+ D SL + ALE
Sbjct: 204 ----------REAFIRD----------------------SLAELQRALEAA--------- 222
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ L+ R K +YSI+ KM+RK + +YD RA+RV+V + I CY+ L
Sbjct: 223 GIQAELAGRPKHIYSIWKKMQRKSLDFSDLYDIRAVRVLVDN---------ITDCYAALG 273
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW + GEFDDYI PK +GYQSLHTAV GP G LEVQIRT MH E G+AAH
Sbjct: 274 VVHALWPHLPGEFDDYIARPKANGYQSLHTAVIGPQGKTLEVQIRTHAMHRANELGVAAH 333
Query: 514 WLYKETGN 521
W YKE G+
Sbjct: 334 WRYKEGGS 341
>gi|385330532|ref|YP_005884483.1| (p)ppGpp synthetase SpoT/RelA [Marinobacter adhaerens HP15]
gi|311693682|gb|ADP96555.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Marinobacter adhaerens HP15]
Length = 757
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/131 (55%), Positives = 89/131 (67%), Gaps = 11/131 (8%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+E LS R K +YSI+ KMRRK + +VYD RA+R++V P ++ CY+ L
Sbjct: 268 GIEGELSGRAKHIYSIWRKMRRKGIDFSQVYDVRAVRILV---------PEVRDCYAALG 318
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GYQSLHTAV GP+G +EVQIRT MHE AE G+ AH
Sbjct: 319 IVHTLWRHIPNEFDDYIANPKENGYQSLHTAVIGPEGKVMEVQIRTHTMHEEAELGVCAH 378
Query: 514 WLYK--ETGNK 522
WLYK + GNK
Sbjct: 379 WLYKGMDKGNK 389
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 82/176 (46%), Gaps = 34/176 (19%)
Query: 151 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 210
++VA IL+ V + L +I +EFGDEVA L+ GV +++ I+ + H + N LG
Sbjct: 96 SLVAAILYRAVREERVPLETIRKEFGDEVAGLINGVQQMAAISSI---HHPLKGN--VLG 150
Query: 211 HEE-----------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 247
E LA+R +R + P K VA+E I+ LA
Sbjct: 151 QSEGQLDNVRKMLVTMIDDVRVALIKLAERTCAIRAVKDAPEEKRMRVAREVFDIYAPLA 210
Query: 248 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR--NRVGYSRRITTIVSS 301
RLG+ +K ELEDL F L ++K +A + + +R GY +R+ + +
Sbjct: 211 HRLGIGHIKWELEDLSFRYLHGSAYKK----IAKLLDEKRLDRDGYIKRVIETLQT 262
>gi|358451268|ref|ZP_09161702.1| (p)ppGpp synthetase I, SpoT/RelA [Marinobacter manganoxydans
MnI7-9]
gi|357224501|gb|EHJ03032.1| (p)ppGpp synthetase I, SpoT/RelA [Marinobacter manganoxydans
MnI7-9]
Length = 745
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/131 (55%), Positives = 89/131 (67%), Gaps = 11/131 (8%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+E LS R K +YSI+ KMRRK + +VYD RA+R++V P ++ CY+ L
Sbjct: 256 GIEGELSGRAKHIYSIWRKMRRKGIDFSQVYDVRAVRILV---------PEVRDCYAALG 306
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GYQSLHTAV GP+G +EVQIRT MHE AE G+ AH
Sbjct: 307 IVHTLWRHIPNEFDDYIANPKENGYQSLHTAVIGPEGKVMEVQIRTHTMHEEAELGVCAH 366
Query: 514 WLYK--ETGNK 522
WLYK + GNK
Sbjct: 367 WLYKGMDKGNK 377
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 82/176 (46%), Gaps = 34/176 (19%)
Query: 151 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 210
++VA IL+ V + L +I +EFGDEVA L+ GV +++ I+ + H + N LG
Sbjct: 84 SLVAAILYRAVREERVPLETIRKEFGDEVAGLINGVQQMAAISSI---HHPLKGN--VLG 138
Query: 211 HEE-----------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 247
E LA+R +R + P K VA+E I+ LA
Sbjct: 139 QSEGQLDNVRKMLVTMIDDVRVALIKLAERTCAIRAVKDAPEEKRMRVAREVFDIYAPLA 198
Query: 248 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR--NRVGYSRRITTIVSS 301
RLG+ +K ELEDL F L ++K +A + + +R GY +R+ + +
Sbjct: 199 HRLGIGHIKWELEDLSFRYLHGSAYKK----IAKLLDEKRLDRDGYIKRVIETLQT 250
>gi|406906918|gb|EKD47922.1| hypothetical protein ACD_65C00216G0008 [uncultured bacterium]
Length = 804
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 115/427 (26%), Positives = 203/427 (47%), Gaps = 92/427 (21%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P +++++++A +FA+ +H GQF+ PY+ H ++ ++ L P +D V+A +
Sbjct: 22 PEVDEKRIREAYSFAEESHEGQFKYDKFPYILHPLNATYLMLELKPD-----MDAVLACL 76
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELAD 216
+HD +++ I+++FG +V LV+ +L+++N H+
Sbjct: 77 VHDTHLHNKDAMDFIKKKFGHDVHTLVSDAKKLTFMNVKTYEHQ---------------- 120
Query: 217 RLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 276
+ +R ++ A+A + +++ LA RL + ++PQ+ KM
Sbjct: 121 -VETLRRMFL-------AMASDLRVVFIRLADRLH--------NMMTLEYMEPQLRIKMA 164
Query: 277 ADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFD 336
+ +++P + R+ L++ L+ K+L
Sbjct: 165 QETHDVYAP-----IASRLGIYQFKSRLED----------------LTFKNL-------- 195
Query: 337 ILSDRRKRTKFLHDLAKSSEAQKKAKVVQDA-GIALTSLVACEEALEKELLISTSYIPGM 395
K K L + E QK K Q++ A++ L A L+KE G
Sbjct: 196 ----HPKEYKVL-----NKEVQKYGKKQQESVDHAISELSAV---LKKE---------GF 234
Query: 396 EVTLSSRLKSLYSIFSKMRRKDVG-IHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
E ++ R+K +YSI++K+++K + +YD ALRVV+ DK YS+L I
Sbjct: 235 ESKITGRVKHIYSIYNKLKKKSTNDLSSIYDIYALRVVLPDKEDERGREDFSHLYSILGI 294
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQG---PDGSALEVQIRTQKMHEYAEHGLA 511
VH+ W+P+ F DY+ PK +GY+SLHT+V G + +E+QIRT+ MHE AE+G+A
Sbjct: 295 VHKNWVPLPKRFKDYLAVPKVNGYRSLHTSVVGLVEDSNNPVEIQIRTKSMHEEAEYGIA 354
Query: 512 AHWLYKE 518
AHW YKE
Sbjct: 355 AHWWYKE 361
>gi|167587364|ref|ZP_02379752.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Burkholderia ubonensis Bu]
Length = 746
Score = 146 bits (368), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 88/128 (68%), Gaps = 9/128 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 240 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 290
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRT +MH +AE+G+AAHW
Sbjct: 291 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTHEMHSFAEYGVAAHW 350
Query: 515 LYKETGNK 522
YKE G +
Sbjct: 351 RYKEAGTR 358
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 84/197 (42%), Gaps = 37/197 (18%)
Query: 108 IAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHDVVDDA 164
+AF R H G R +G+ H T I+ GK VD V A L +
Sbjct: 21 LAFV-REHAGDARLSSGELLADHAAGTASIM-------GKLNVDPPAVQAAALFALTPHL 72
Query: 165 CESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRR---------------HRRINVN---Q 206
+ + FGDEVA+LV+ V +L + + R RR + +
Sbjct: 73 NDPERELAARFGDEVARLVSDVRKLLRLGTVSLRVAQNAAPEAGRDAAAERRAQIEALRK 132
Query: 207 GTLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 258
L + LA RL ++R A A VA+ETL I+ LA+RLG+W LK E
Sbjct: 133 MLLAFAQDIRVVLIRLASRLQSLRYYAAAKVAPPPDVARETLEIYAPLANRLGIWQLKWE 192
Query: 259 LEDLCFAVLQPQIFRKM 275
LEDL F P ++++
Sbjct: 193 LEDLAFRFEDPVTYKRI 209
>gi|170695919|ref|ZP_02887059.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia graminis C4D1M]
gi|170139217|gb|EDT07405.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia graminis C4D1M]
Length = 747
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 80/180 (44%), Positives = 110/180 (61%), Gaps = 19/180 (10%)
Query: 348 LHDLAKSSEA----QKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 402
L DLA E ++ AK++ + + S VA E L++EL + + +S R
Sbjct: 192 LEDLAFRFEEPAVYKRIAKLLDEKRVERESYVAQAIERLQQELAAAN-----IRAEVSGR 246
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K ++SI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 247 PKHIFSIWRKMRGKELDFAELYDVRAFRVIV---------PDIKDCYTVLGIVHNLWQPV 297
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
EFDDYI PKP+GY+SLHT V G DG A EVQIRT +MH +AE+G+AAHW YKE G +
Sbjct: 298 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTHEMHRFAEYGVAAHWRYKEAGTR 357
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 26/131 (19%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYIN------------------QLLRRHRRINVNQGTLGHE 212
I + FG+EVA+LV+ V +L + Q RR + + + L
Sbjct: 78 IADNFGEEVAQLVSDVRKLLRLGTVSLRAAQNTMPEAGRDAQAARRAQVEALRKMLLAFA 137
Query: 213 E--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 264
+ LA RL ++R A + VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 138 QDIRVVLIRLASRLQSLRYYAAAKLTPSPDVARETLDIYAPLANRLGIWQLKWELEDLAF 197
Query: 265 AVLQPQIFRKM 275
+P +++++
Sbjct: 198 RFEEPAVYKRI 208
>gi|326794413|ref|YP_004312233.1| (p)ppGpp synthetase I SpoT/RelA [Marinomonas mediterranea MMB-1]
gi|326545177|gb|ADZ90397.1| (p)ppGpp synthetase I, SpoT/RelA [Marinomonas mediterranea MMB-1]
Length = 749
Score = 145 bits (367), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 96/152 (63%), Gaps = 11/152 (7%)
Query: 384 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 443
ELL S +E L R K +YSI+ KM+RK++G +VYD RA+R++V +
Sbjct: 246 ELLDSRLKGIKIEADLMGRAKHIYSIWRKMKRKNIGFDEVYDVRAVRILVEED------- 298
Query: 444 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 503
CY +L +VH LW PI EFDDYI NPKP+GYQSLHTAV GP G ALE+QIRT MH
Sbjct: 299 --MQCYGVLGVVHNLWKPIPQEFDDYISNPKPNGYQSLHTAVVGPQGRALEIQIRTNTMH 356
Query: 504 EYAEHGLAAHWLYKETGNKLQSISSMDESDIE 535
E AE G+ AHW YK G L S S+ E ++
Sbjct: 357 EDAELGVCAHWKYK--GTDLSSNSTSYEEKLQ 386
Score = 45.8 bits (107), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 25/183 (13%)
Query: 137 LAMLIPSSGKRA-VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYI--- 192
L M+ +G RA D++VA L+ V + + + + FG +VA L+ GV R+ +
Sbjct: 68 LEMVEILAGFRADQDSLVAAALYRTVREDQLPISRVVDMFGRKVASLIEGVIRMGEVSKN 127
Query: 193 --------------NQL--LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVA 236
NQL LR+ ++ + +LA+R ++ A+ AVA
Sbjct: 128 LSADATAEVLGSSENQLESLRKMLVSIIDDVRVVLIKLAERACAIKEAKHQDGARKEAVA 187
Query: 237 QETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRIT 296
E ++ LA RLG+ +K ELEDL F L P ++++ + W R+ + I
Sbjct: 188 LEVQSVYAPLAHRLGIGHIKWELEDLSFRYLYPVEYKRI-----AKWLDEKRLDRQQYIQ 242
Query: 297 TIV 299
++
Sbjct: 243 DVI 245
>gi|88703547|ref|ZP_01101263.1| GTP pyrophosphokinase [Congregibacter litoralis KT71]
gi|88702261|gb|EAQ99364.1| GTP pyrophosphokinase [Congregibacter litoralis KT71]
Length = 744
Score = 145 bits (367), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 72/138 (52%), Positives = 94/138 (68%), Gaps = 9/138 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+E +S R K +YSI+ KM+RK +G +VYD RA+R++V P ++ CY+ L
Sbjct: 257 GIEFEISGRSKHIYSIWRKMQRKGIGFSQVYDIRAIRILV---------PELKDCYATLG 307
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW I EFDDYI +PK +GY+SLHTAV GP+G LEVQIRT++MHE AE G+ AH
Sbjct: 308 LVHGLWRNIPNEFDDYIASPKENGYRSLHTAVIGPEGKILEVQIRTREMHEEAELGVCAH 367
Query: 514 WLYKETGNKLQSISSMDE 531
W YK T + S SS DE
Sbjct: 368 WRYKGTDTQPGSGSSYDE 385
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 32/167 (19%)
Query: 131 IHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLS 190
I + +ILA L + VD ++AG+L+ V + SL +E+ FG +V+ + GV R++
Sbjct: 71 IESAQILAEL-----RVGVDCLIAGLLYRAVREQRLSLDDVEKRFGKKVSNQLRGVLRMA 125
Query: 191 YINQLLRRHRRINVNQGTLGH-EELADRLHNM-----------------RT--IYALPPA 230
I L R + LG E D + M RT I A+
Sbjct: 126 AIADL-----RNPSDTAVLGEAERQRDNIRKMLVAIVDDVQVALIKLAERTCAIRAVKSD 180
Query: 231 KARA--VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
K R VA++ ++ LA RLG+ LK ELEDL F L ++++
Sbjct: 181 KTRQELVARDVFDVYAPLAHRLGIGHLKWELEDLSFRYLYNDSYKRI 227
>gi|300311292|ref|YP_003775384.1| (p)ppGpp synthetase I [Herbaspirillum seropedicae SmR1]
gi|300074077|gb|ADJ63476.1| (p)ppGpp synthetase I (GTP pyrophosphokinase) protein
[Herbaspirillum seropedicae SmR1]
Length = 749
Score = 145 bits (367), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 69/133 (51%), Positives = 88/133 (66%), Gaps = 9/133 (6%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+S R K +YSI++KMR K + ++YD RA RV+V D ++ CY++L IVH +
Sbjct: 254 VSGRPKHIYSIWNKMRGKHIDFSELYDVRAFRVIVDD---------VKTCYAVLGIVHDI 304
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI EFDDYI PK +GYQSLHT V DG ALEVQIRT +MH +AE+G+AAHW YKE
Sbjct: 305 WTPIPEEFDDYISRPKQNGYQSLHTVVTAEDGRALEVQIRTHEMHHFAEYGVAAHWRYKE 364
Query: 519 TGNKLQSISSMDE 531
+G S DE
Sbjct: 365 SGGSNFSAQKYDE 377
Score = 46.6 bits (109), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 45/187 (24%)
Query: 122 TGDPYLTHCIHTGRILAML-IPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVA 180
+G L I +L L + ++ + A A +LH +++ +EE FG E+A
Sbjct: 45 SGQNALQFSISVATVLTALNVDAATRIAALAFEAQMLHPELEE------KLEERFGKEIA 98
Query: 181 KLVAGVSRLSYINQLLRRHR-----RINVNQGTLGHEELADRLHNMRTIYALPPAKARAV 235
LV V QL+R H + V +G ++ A ++ +R + RAV
Sbjct: 99 DLVGNV------RQLMRFHSFSFQPQQEVLRGKNAAQQAAAQIETLRKMLLAMATDMRAV 152
Query: 236 ---------------------------AQETLLIWCSLASRLGLWALKAELEDLCFAVLQ 268
A++T ++ LA+RLG+W LK ELEDL F L+
Sbjct: 153 LVRLASRVATLRYFAETKQEDEASANYARQTFELYAPLANRLGIWQLKWELEDLSFRFLE 212
Query: 269 PQIFRKM 275
P ++++
Sbjct: 213 PVTYKRI 219
>gi|120555153|ref|YP_959504.1| (p)ppGpp synthetase I SpoT/RelA [Marinobacter aquaeolei VT8]
gi|387813411|ref|YP_005428893.1| (p)ppGpp synthetase I/GTP pyrophosphokinaseP), SpoT/RelA
[Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|120325002|gb|ABM19317.1| (p)ppGpp synthetase I, SpoT/RelA [Marinobacter aquaeolei VT8]
gi|381338423|emb|CCG94470.1| (p)ppGpp synthetase I/GTP pyrophosphokinaseP), SpoT/RelA
[Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 745
Score = 145 bits (367), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 82/181 (45%), Positives = 109/181 (60%), Gaps = 19/181 (10%)
Query: 346 KFLHDLAKSSEAQKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSRLK 404
++LH S +K AK++ + + S + + L+ EL S G++ LS R K
Sbjct: 216 RYLH----GSAYKKIAKLLDEKRLDRESYIRRVIDTLQTELKAS-----GIKAELSGRAK 266
Query: 405 SLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDG 464
+YSI+ KMRRK + +VYD RA+R++V P ++ CY L IVH LW I
Sbjct: 267 HIYSIWRKMRRKGIDFSQVYDVRAVRILV---------PEVRDCYGALGIVHTLWRHIPN 317
Query: 465 EFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQ 524
EFDDYI NPK +GYQSLHTAV GP+G +EVQIRT MHE AE G+ AHWLYK T + +
Sbjct: 318 EFDDYIANPKENGYQSLHTAVIGPEGKVMEVQIRTHAMHEEAELGVCAHWLYKGTDTRNK 377
Query: 525 S 525
S
Sbjct: 378 S 378
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 69/148 (46%), Gaps = 28/148 (18%)
Query: 151 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 210
++VA +L+ V + L + +EFGDEVA L+ GV +++ I+ + H + N LG
Sbjct: 84 SLVAAVLYRAVREERVPLEEVRKEFGDEVAGLINGVQQMAAISSI---HHPLKGN--VLG 138
Query: 211 HEE-----------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 247
E LA+R +R + P K VA+E I+ LA
Sbjct: 139 QSEGQLDNVRKMLVTMIDDVRVALIKLAERTCAIRAVKDAPEEKRMRVAREVFDIYAPLA 198
Query: 248 SRLGLWALKAELEDLCFAVLQPQIFRKM 275
RLG+ +K ELEDL F L ++K+
Sbjct: 199 HRLGIGHIKWELEDLSFRYLHGSAYKKI 226
>gi|339325467|ref|YP_004685160.1| GTP pyrophosphokinase [Cupriavidus necator N-1]
gi|338165624|gb|AEI76679.1| GTP pyrophosphokinase RelA [Cupriavidus necator N-1]
Length = 742
Score = 145 bits (367), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 141/445 (31%), Positives = 200/445 (44%), Gaps = 93/445 (20%)
Query: 87 IVDGVDVTGY--PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSS 144
+V D+TG I + E V++A+A+ + TG+ L+H RIL
Sbjct: 1 MVTSTDLTGRVAGIPDAELVERALAYVREHGAEVALPTGETVLSHAQGMLRIL------D 54
Query: 145 GKRAVDTVVAGI-LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI- 202
G R D A L +V + I FGDEVA+LV GV +L I +
Sbjct: 55 GLRVDDAARAAACLFGLVAFVPGTEAEIAPRFGDEVARLVDGVRQLLRIGAIAGSRPEAE 114
Query: 203 ----NVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 258
+ N+ HE++ + L M A AQ+ ++ LASRL AE
Sbjct: 115 PAAPSKNEAQARHEQV-EALRKMLL----------AFAQDIRVVLVRLASRLQTLRWMAE 163
Query: 259 LEDLCFAVLQPQIFRKMRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTT 317
+ QP + R + +++P NR+G
Sbjct: 164 TKQ----APQPGVAR----ETLDIYAPLANRLG--------------------------- 188
Query: 318 FDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVAC 377
+ MK LE + D KR L D K ++ G +++
Sbjct: 189 ----IWQMKWELEDLAFRFEQPDTYKRIAKLLD----------EKRIEREGYIASAI--- 231
Query: 378 EEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKN 437
E L+ EL +T+ IP +S R K +YSI+ KMR K++ +YD RA RV+V D
Sbjct: 232 -ERLQSEL--ATAGIPA---EVSGRPKHIYSIWKKMRGKELDFADLYDVRAFRVIVDD-- 283
Query: 438 GTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQI 497
I+ CY++L IVH +W PI EFDDYI PK +GY+SLHT V G DG A EVQI
Sbjct: 284 -------IKDCYTVLGIVHHIWQPIPREFDDYISRPKANGYKSLHTVVIGDDGRAFEVQI 336
Query: 498 RTQKMHEYAEHGLAAHWLYKETGNK 522
RT +MH +AE+G+AAHW YKE G++
Sbjct: 337 RTHEMHHFAEYGVAAHWRYKEAGSR 361
>gi|444921552|ref|ZP_21241387.1| GTP pyrophosphokinase [Wohlfahrtiimonas chitiniclastica SH04]
gi|444507279|gb|ELV07456.1| GTP pyrophosphokinase [Wohlfahrtiimonas chitiniclastica SH04]
Length = 695
Score = 145 bits (367), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 103/166 (62%), Gaps = 18/166 (10%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+E +S R+K +YSI+ KM K ++ D RA+RV+V + + CY +L
Sbjct: 212 GIEGEVSGRVKHIYSIWKKMTTKGKSFEELLDVRAVRVIVKN---------LSDCYRVLG 262
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH W P+ EFDDYI NPKP+GYQSLHTAV GP A+EVQIRT+KMHE+AE G+AAH
Sbjct: 263 MVHEKWPPLPREFDDYIANPKPNGYQSLHTAVLGPQNKAIEVQIRTRKMHEHAELGVAAH 322
Query: 514 WLYKETGNKLQSISSMDES----DIEASSSLSKDTDDHNPLDTDLF 555
W YKE+ L + ++ D EA+S SK+ LD DLF
Sbjct: 323 WHYKESDASLSQQAKLNRVRQLLDQEANSESSKEL-----LDKDLF 363
>gi|415946935|ref|ZP_11556523.1| GTP pyrophosphokinase [Herbaspirillum frisingense GSF30]
gi|407758147|gb|EKF68016.1| GTP pyrophosphokinase [Herbaspirillum frisingense GSF30]
Length = 727
Score = 145 bits (366), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 99/162 (61%), Gaps = 17/162 (10%)
Query: 378 EEALEKELLISTSYI--------PGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARAL 429
E+ LE+E ++++ + +S R K +YSI++KMR K + ++YD RA
Sbjct: 203 EKRLEREAFVASAIARLRSEMAAQDIRAEVSGRPKHIYSIWNKMRGKSIDFSELYDVRAF 262
Query: 430 RVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD 489
RV+V D ++ CY++L IVH +W PI EFDDYI PK +GYQSLHT V D
Sbjct: 263 RVIVDD---------VKTCYAVLGIVHDIWTPIPEEFDDYISRPKQNGYQSLHTVVLAED 313
Query: 490 GSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDE 531
G ALEVQIRT +MH +AE+G+AAHW YKE+G S DE
Sbjct: 314 GRALEVQIRTHEMHHFAEYGVAAHWRYKESGGSNFSAQKYDE 355
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 27/132 (20%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPA 230
+EE FG E+A+LV V +L + L + + V +G ++ A ++ +R +
Sbjct: 66 LEERFGKEIAELVGNVRQLMRFHSLSFQPQNQEVLRGKNAAQQAAAQVETLRKMLLAMAT 125
Query: 231 KARAV---------------------------AQETLLIWCSLASRLGLWALKAELEDLC 263
RAV A++T ++ LA+RLG+W LK ELEDL
Sbjct: 126 DMRAVLVRLASRVATLRYFAETKQENEASAQYARQTFDLYAPLANRLGIWQLKWELEDLS 185
Query: 264 FAVLQPQIFRKM 275
F L+PQ ++++
Sbjct: 186 FRFLEPQTYKRI 197
>gi|167824448|ref|ZP_02455919.1| GTP pyrophosphokinase [Burkholderia pseudomallei 9]
gi|226199671|ref|ZP_03795224.1| GTP diphosphokinase [Burkholderia pseudomallei Pakistan 9]
gi|225928257|gb|EEH24291.1| GTP diphosphokinase [Burkholderia pseudomallei Pakistan 9]
Length = 745
Score = 145 bits (366), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 88/128 (68%), Gaps = 9/128 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 237 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 287
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW P+ EFDDYI PKP+GY+SLH V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 288 VHHLWQPVPKEFDDYISRPKPNGYKSLHAVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 347
Query: 515 LYKETGNK 522
YKE G +
Sbjct: 348 RYKEAGAR 355
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 82/197 (41%), Gaps = 37/197 (18%)
Query: 108 IAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLI--PSSGKRAVDTVVAGILHDVVDDA 164
+AF R H G R +G+ H T I+ L P + + A +A L D
Sbjct: 18 LAFV-REHAGDARLSSGERLADHAAGTSTIMQRLNVDPPATQAAALFALAPYLSD----- 71
Query: 165 CESLGSIEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE---------- 213
I FGDEVA LVA V +L + + LR + V+ G E
Sbjct: 72 --PDKQIAGHFGDEVAHLVADVRKLLRLGTVSLRAAQSAPVDAGRDAQAERRAQIEALRK 129
Query: 214 ---------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 258
LA RL ++R A VA+ETL I+ LA+RLG+W LK E
Sbjct: 130 MLLAFAQDIRVVLIRLASRLQSLRYYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWE 189
Query: 259 LEDLCFAVLQPQIFRKM 275
LEDL F P ++++
Sbjct: 190 LEDLAFRFEDPVTYKRI 206
>gi|399020946|ref|ZP_10723070.1| (p)ppGpp synthetase, RelA/SpoT family [Herbaspirillum sp. CF444]
gi|398093912|gb|EJL84286.1| (p)ppGpp synthetase, RelA/SpoT family [Herbaspirillum sp. CF444]
Length = 752
Score = 145 bits (366), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 90/137 (65%), Gaps = 9/137 (6%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
++ +S R K +YSI++KMR K + ++YD RA RV+V D I+ CY++L I
Sbjct: 250 IKAEVSGRPKHIYSIWNKMRGKSIDFSELYDVRAFRVIVDD---------IKTCYTVLGI 300
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
+H +W+PI EFDDYI PK +GYQSLHT V DG LEVQIRT +MH +AE+G+AAHW
Sbjct: 301 IHNIWVPIPKEFDDYISRPKQNGYQSLHTVVIAEDGRPLEVQIRTHEMHHFAEYGVAAHW 360
Query: 515 LYKETGNKLQSISSMDE 531
YKE+G S DE
Sbjct: 361 RYKESGGSNFSAQKYDE 377
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 93/209 (44%), Gaps = 31/209 (14%)
Query: 93 VTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
V G + +V A+AF + + G+ +G L +L L + +T
Sbjct: 16 VAGLSPEDSARVLSALAFVEPLYAGKPIPSGQDALQFVQGVVSVLTALNVDA-----ETR 70
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH------------- 199
+AG+L ++ ++ +IEE FG ++A LVAGV +L + L +H
Sbjct: 71 IAGLLFELHVLDLDAAATIEERFGKDIADLVAGVRQLMRFHGLTFQHPQEVLRGKNAAQQ 130
Query: 200 --------RRINVNQGT---LGHEELADRLHNMRTI--YALPPAKARAVAQETLLIWCSL 246
R++ + T + LA R+ +R L A+ET ++ L
Sbjct: 131 AAAQVETLRKMLLAMATDMRVVLVRLASRVTTLRYFAENKLENETTAQYARETFDLYAPL 190
Query: 247 ASRLGLWALKAELEDLCFAVLQPQIFRKM 275
A+RLG+W LK ELEDL F ++P ++++
Sbjct: 191 ANRLGIWQLKWELEDLSFRFIEPVTYKRI 219
>gi|350545530|ref|ZP_08915006.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [Candidatus
Burkholderia kirkii UZHbot1]
gi|350526692|emb|CCD39813.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [Candidatus
Burkholderia kirkii UZHbot1]
Length = 740
Score = 145 bits (366), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 68/124 (54%), Positives = 87/124 (70%), Gaps = 9/124 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+S R K +YSI+ KMR K + ++ D RA RV+VGD I+ CY++L IVH L
Sbjct: 243 VSGRPKHIYSIWKKMRGKHLDFSELNDVRAFRVIVGD---------IKDCYTVLGIVHNL 293
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH++AE+G+AAHW YKE
Sbjct: 294 WQPVPREFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHQFAEYGVAAHWRYKE 353
Query: 519 TGNK 522
G +
Sbjct: 354 AGTR 357
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 80/198 (40%), Gaps = 31/198 (15%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ A+AF + TG+ + H T RI+ L S A + A H +DD
Sbjct: 16 IDDALAFVREHAKDARLSTGELLVDHAAGTARIMQTLNVDSHAIAAAALFAPAPH--LDD 73
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE----------- 212
+ I E FG EV +LV V +L + + R + + T +
Sbjct: 74 PEKV---ITERFGPEVQRLVGDVRKLLRLGSVSSRATLAELPENTRDAQAARHAQVEALR 130
Query: 213 ---------------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKA 257
LA R+ +R A + V +ETL I+ LA+RLG+W LK
Sbjct: 131 KMLLAFAQDIRVVLIRLASRVQTLRYHAAHKIDPSPDVPRETLEIYAPLANRLGIWQLKW 190
Query: 258 ELEDLCFAVLQPQIFRKM 275
ELEDL F P ++++
Sbjct: 191 ELEDLSFRFEDPVTYKRI 208
>gi|33866854|ref|NP_898413.1| guanosine-3',5'-bis(diphosphate) 3'-diphosphatase, (ppGpp)ase
[Synechococcus sp. WH 8102]
gi|33639455|emb|CAE08839.1| guanosine-3',5'-bis(diphosphate) 3'-diphosphatase, (ppGpp)ase
[Synechococcus sp. WH 8102]
Length = 776
Score = 145 bits (366), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 126/416 (30%), Positives = 188/416 (45%), Gaps = 104/416 (25%)
Query: 107 AIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACE 166
A F + H GQFR +GDP + H + +L + S+ + AG LHDVV+D
Sbjct: 72 AFDFGFQLHEGQFRASGDPCIVHPVAVADLLRDIGASAS-----VIAAGFLHDVVEDTDV 126
Query: 167 SLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTIYA 226
+ IE FG EV +LV GV++L I+ N T E N+R ++
Sbjct: 127 TPDQIELHFGSEVRELVEGVTKLGGIH----------FNNRTEAQAE------NLRRMFL 170
Query: 227 LPPAKARAVAQETLLIWCSLASRL----GLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
A+A + ++ LA RL L ALK E +++ + +
Sbjct: 171 -------AMASDIRVVLVKLADRLHNMRTLGALKEEKR------------QRIARETKEI 211
Query: 283 WSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
++P NR+G R + +D +F + + +++ + V
Sbjct: 212 YAPLANRLGIGRFKWEL------------EDLAFKLLEPE--AFREIQQEVA-------- 249
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
+K SE +++ V +AL + + LE G EV S
Sbjct: 250 ----------SKRSEREERLGVT----VALLNDRLAQAGLE-----------GCEV--SG 282
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K L+ I+SKM+R+ H++YD ALR++ P+++ CY L +VH + P
Sbjct: 283 RPKHLFGIWSKMQRQQKAFHEIYDVAALRIIT---------PSVEACYRALAVVHDTFRP 333
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 517
I G F DYI PKP+GYQSLHTAV G +EVQIRT +MH AE G+AAHW YK
Sbjct: 334 IPGRFKDYIGLPKPNGYQSLHTAVIGRH-RPIEVQIRTIEMHRVAEFGIAAHWKYK 388
>gi|421745285|ref|ZP_16183143.1| (p)ppgpp synthetase i (gtp pyrophosphokinase) [Cupriavidus necator
HPC(L)]
gi|409776307|gb|EKN57726.1| (p)ppgpp synthetase i (gtp pyrophosphokinase) [Cupriavidus necator
HPC(L)]
Length = 742
Score = 145 bits (366), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 73/144 (50%), Positives = 93/144 (64%), Gaps = 14/144 (9%)
Query: 379 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 438
E L++EL + G+ +S R K +YSI+ KMR KD+ +YD RA RV+V D
Sbjct: 232 ERLQRELAAA-----GIRAEVSGRPKHIYSIWKKMRGKDLDFADLYDVRAFRVIVDD--- 283
Query: 439 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 498
I+ CY++L IVH +W PI EFDDYI PK +GY+SLHT V G DG A EVQIR
Sbjct: 284 ------IKDCYAVLGIVHHVWQPIPREFDDYISRPKANGYKSLHTVVIGDDGRAFEVQIR 337
Query: 499 TQKMHEYAEHGLAAHWLYKETGNK 522
T +MH +AE+G+AAHW YKE G K
Sbjct: 338 THEMHHFAEYGVAAHWRYKEAGGK 361
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 88/199 (44%), Gaps = 33/199 (16%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI-LHDVVD 162
V++A+A+A+ TG+ L+H RIL G R D A L V
Sbjct: 20 VEQALAYAREHGEAVALPTGESVLSHAEGMLRIL------DGLRIDDAARAAACLFPVAA 73
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINV----NQGTLGHEE---- 213
E+ I E FGDEVA+LV V +L I + + R + N+ HE+
Sbjct: 74 FVPETEAEIPERFGDEVARLVKDVRQLLRIGAIAVNRGDTVEAPSSRNEAQARHEQVEAL 133
Query: 214 -----------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 256
LA RL +R + A VA+ETL I+ LA+RLG+W +K
Sbjct: 134 RKMLLAFAQDIRVVLVRLASRLQTLRWLAQTKNAPLPGVARETLDIYAPLANRLGIWQMK 193
Query: 257 AELEDLCFAVLQPQIFRKM 275
ELEDL F QP ++++
Sbjct: 194 WELEDLAFRFEQPDTYKRI 212
>gi|167620277|ref|ZP_02388908.1| GTP pyrophosphokinase [Burkholderia thailandensis Bt4]
gi|257139341|ref|ZP_05587603.1| GTP pyrophosphokinase [Burkholderia thailandensis E264]
Length = 747
Score = 145 bits (366), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 88/128 (68%), Gaps = 9/128 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 239 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 289
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRT +MH +AE+G+AAHW
Sbjct: 290 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTHEMHRFAEYGVAAHW 349
Query: 515 LYKETGNK 522
YKE G +
Sbjct: 350 RYKEAGAR 357
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 83/197 (42%), Gaps = 37/197 (18%)
Query: 108 IAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLI--PSSGKRAVDTVVAGILHDVVDDA 164
+AF R H G R +G+ H T I+ L P + + A +A L D
Sbjct: 20 LAFV-REHAGDARLPSGELLADHATGTSTIMQRLNVDPPATQAAALFALAPYLSD----- 73
Query: 165 CESLGSIEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE---------- 213
I E FGDEVA LV V +L + + LR + + V+ G E
Sbjct: 74 --PEKQIAERFGDEVAHLVTDVRKLLRLGTVSLRAAQSVPVDAGRDAQAERRAQIEALRK 131
Query: 214 ---------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 258
LA RL ++R A VA+ETL I+ LA+RLG+W LK E
Sbjct: 132 MLLAFAQDIRVVLIRLASRLQSLRHYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWE 191
Query: 259 LEDLCFAVLQPQIFRKM 275
LEDL F P ++++
Sbjct: 192 LEDLAFRFEDPVTYKRI 208
>gi|83719568|ref|YP_443112.1| GTP pyrophosphokinase [Burkholderia thailandensis E264]
gi|83653393|gb|ABC37456.1| GTP pyrophosphokinase [Burkholderia thailandensis E264]
Length = 725
Score = 145 bits (366), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 88/128 (68%), Gaps = 9/128 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 217 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 267
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRT +MH +AE+G+AAHW
Sbjct: 268 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTHEMHRFAEYGVAAHW 327
Query: 515 LYKETGNK 522
YKE G +
Sbjct: 328 RYKEAGAR 335
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 60/131 (45%), Gaps = 26/131 (19%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE---------------- 213
I E FGDEVA LV V +L + + LR + + V+ G E
Sbjct: 56 IAERFGDEVAHLVTDVRKLLRLGTVSLRAAQSVPVDAGRDAQAERRAQIEALRKMLLAFA 115
Query: 214 ---------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 264
LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 116 QDIRVVLIRLASRLQSLRHYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWELEDLAF 175
Query: 265 AVLQPQIFRKM 275
P ++++
Sbjct: 176 RFEDPVTYKRI 186
>gi|17546295|ref|NP_519697.1| GTP pyrophosphokinase [Ralstonia solanacearum GMI1000]
gi|17428592|emb|CAD15278.1| probable gtp pyrophosphokinase (atp:gtp 3'-pyrophosphotransferase)
protein [Ralstonia solanacearum GMI1000]
Length = 746
Score = 145 bits (366), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 88/129 (68%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KMR KD+ +YD RA RV+V D I+ CY++L
Sbjct: 247 GIHAEVSGRPKHIYSIWRKMRGKDLDFADLYDVRAFRVIVDD---------IKDCYTVLG 297
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
VH +W PI EFDDYI PK +GY+SLHT V G DG ALEVQIRT++MH +AE+G+AAH
Sbjct: 298 FVHHMWQPIPKEFDDYISRPKTNGYKSLHTVVIGDDGRALEVQIRTREMHHFAEYGVAAH 357
Query: 514 WLYKETGNK 522
W YKE G+K
Sbjct: 358 WRYKEAGSK 366
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 81/181 (44%), Gaps = 33/181 (18%)
Query: 122 TGDPYLTHCIHTGRILAML-IPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVA 180
TG+P ++H T IL L + + +A + IL A ++ +IE FG EVA
Sbjct: 43 TGEPLVSHARGTVAILEGLRVDAPSLQAAALFLLPIL------ATDNEKAIEPAFGGEVA 96
Query: 181 KLVAGVSRLSYINQLL------------------RRHRRINVNQGTLGHEE--------L 214
+LV V +L I + RR + + + L + L
Sbjct: 97 RLVHDVRQLLRIGAIAGMASPAEAGVTRKNEAEARRAQVEALRKMLLAFAQDIRVVLIRL 156
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
A RL ++R + +A+ETL I+ LA+RLG+W LK ELEDL F P +++
Sbjct: 157 ASRLQSLRWLAQNKLPAPEGMARETLDIYAPLANRLGIWQLKWELEDLGFRFEDPDTYKR 216
Query: 275 M 275
+
Sbjct: 217 I 217
>gi|119476417|ref|ZP_01616768.1| GTP pyrophosphokinase [marine gamma proteobacterium HTCC2143]
gi|119450281|gb|EAW31516.1| GTP pyrophosphokinase [marine gamma proteobacterium HTCC2143]
Length = 741
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 89/129 (68%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+E LS R K +YSI+ KM+RK +G +VYD RA+R++V P ++ CY+ L
Sbjct: 254 GIEADLSGRAKHIYSIWRKMQRKGIGFSQVYDIRAVRILV---------PDVRDCYAALG 304
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW I EFDDYI NPK +GY+SLHTAV GP+G ALE+QIRT MHE AE G+ AH
Sbjct: 305 LVHSLWRNIPNEFDDYIANPKDNGYRSLHTAVIGPEGKALEIQIRTFSMHEEAEFGICAH 364
Query: 514 WLYKETGNK 522
W YK + N+
Sbjct: 365 WRYKGSDNQ 373
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 72/143 (50%), Gaps = 18/143 (12%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLL------------- 196
+T++A IL+ V + + + + FG+E+ L+ GV R++ ++ ++
Sbjct: 83 ETLIAAILYRAVREEKLQIELVAKNFGEEIVHLINGVLRMAAMSTVITGDNPVLGQAEAQ 142
Query: 197 ----RRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
R+ V+ + +LA+R +R + PAK VA+E ++ LA RLG+
Sbjct: 143 KDNIRKMLVALVDDVRVALVKLAERTCAIRMVKN-NPAKRYRVAREVHDVYAPLAHRLGI 201
Query: 253 WALKAELEDLCFAVLQPQIFRKM 275
+K ELEDL F LQP ++K+
Sbjct: 202 GHIKWELEDLSFRYLQPVAYKKI 224
>gi|332284967|ref|YP_004416878.1| GTP pyrophosphokinase [Pusillimonas sp. T7-7]
gi|330428920|gb|AEC20254.1| GTP pyrophosphokinase [Pusillimonas sp. T7-7]
Length = 770
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 101/160 (63%), Gaps = 14/160 (8%)
Query: 374 LVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVV 433
+ A LE+EL + ++IP +S R K +YSI++KMR K + +++D RALR++V
Sbjct: 251 ITAAVSRLEREL--ADAHIPAQ---VSGRPKHIYSIWNKMRNKGIDFSQLFDLRALRIIV 305
Query: 434 GDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSAL 493
D+ + CY++L + H LW P+ EFDDYI PKP+GY+SLHT V G
Sbjct: 306 QDE---------RACYAVLALAHSLWTPVSDEFDDYISRPKPNGYRSLHTVVTDTQGRTF 356
Query: 494 EVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESD 533
E+QIRTQ+MHE+AE+G+AAHW YKE G + +S+ D
Sbjct: 357 EIQIRTQEMHEFAEYGMAAHWRYKEAGPRGGQVSAAGRYD 396
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 80/196 (40%), Gaps = 21/196 (10%)
Query: 101 DEQ----VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
DEQ + KA+ + + G TG+P HC ILA L + RA +
Sbjct: 41 DEQGTDLLAKAVQWVREPLAGLTASTGEPLGEHCAEVVLILAELGTDAETRASALITVLP 100
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVS---RLSYINQLLRRHRRINVNQGTLGHE- 212
L A + + FG EV LV G RL Y+ +Q + +
Sbjct: 101 LAAPDSAAGTRQDPLRKAFGSEVVSLVQGTRALLRLGYLTGQAADSTASGTDQKEMQRKM 160
Query: 213 -------------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAEL 259
LA RL ++R + A+ET+ ++ LA+RLG+W +K E+
Sbjct: 161 LLAMAADLRIVLMRLASRLQSLRWYATTKIPCPSSFARETMELYTPLANRLGIWQIKWEM 220
Query: 260 EDLCFAVLQPQIFRKM 275
EDL F L+P ++ +
Sbjct: 221 EDLAFRFLEPVTYKAI 236
>gi|91788565|ref|YP_549517.1| (p)ppGpp synthetase I SpoT/RelA [Polaromonas sp. JS666]
gi|91697790|gb|ABE44619.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Polaromonas sp. JS666]
Length = 750
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 90/141 (63%), Gaps = 10/141 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ + R K +YSI KMR K +G +V+D RALRV+ D NG CY+ L
Sbjct: 252 GIAALVQGRPKHIYSIVKKMRGKSLGFDQVFDIRALRVIAADING---------CYAALG 302
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
VH + P+ GEFDDYI PK +GYQSLHT V+ G A+E+QIRTQ MH++AEHG+AAH
Sbjct: 303 FVHSRFTPVAGEFDDYIAKPKSNGYQSLHTVVRDAAGRAVEIQIRTQAMHDHAEHGVAAH 362
Query: 514 WLYKETGNKLQS-ISSMDESD 533
W YKE G K S +S+ E D
Sbjct: 363 WAYKEAGTKGYSGVSASSEYD 383
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 88/221 (39%), Gaps = 35/221 (15%)
Query: 77 PKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRI 136
P ++P IV P + +A AFA+ G+ TG+ L H I
Sbjct: 11 PTAPQRPNASIVTAT--ADSPPDQPNALARARAFAEPLIAGETLDTGENILAHADAVAAI 68
Query: 137 LAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEE----EFGDEVAKLVAGVSRLSYI 192
L + S +A +V AC+ L +E FG A L ++L ++
Sbjct: 69 LKGIGGSEAMQAATYLV---------HACQHLTKPQEVIAKAFGANYAALAIETTKLVHV 119
Query: 193 NQLLRRH------------RRINVNQGTLGHEE--------LADRLHNMRTIYALPPAKA 232
+ R + NV + L LA RL +R A +
Sbjct: 120 QRQARTADAKAQLLDDPAAQTENVRKMLLAFSRDLRVVMLRLASRLQTLRYYAATRQSAP 179
Query: 233 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
A+A E+L ++ LA+RLG+W +K E+EDL F L+P ++
Sbjct: 180 LALAHESLHVFAPLANRLGIWQIKWEMEDLAFRFLEPDTYK 220
>gi|398833360|ref|ZP_10591494.1| (p)ppGpp synthetase, RelA/SpoT family [Herbaspirillum sp. YR522]
gi|398221717|gb|EJN08119.1| (p)ppGpp synthetase, RelA/SpoT family [Herbaspirillum sp. YR522]
Length = 750
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 90/138 (65%), Gaps = 9/138 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI++KMR K + ++YD RA RV+V D ++ CY++L
Sbjct: 250 GIRAEVSGRPKHIYSIWNKMRGKSLDFSELYDVRAFRVIVDD---------VKTCYTVLG 300
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH +W PI EFDDYI PK +GYQSLHT V DG A+EVQ+RT +MH +AE+G+AAH
Sbjct: 301 IVHDIWTPIPEEFDDYISRPKANGYQSLHTVVMAEDGRAIEVQVRTHEMHYFAEYGVAAH 360
Query: 514 WLYKETGNKLQSISSMDE 531
W YKE+G + DE
Sbjct: 361 WRYKESGGSNFAAQKYDE 378
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 27/154 (17%)
Query: 149 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 208
V+T +AG+L ++ E +EE FG E A+LV GV +L + L + + V +G
Sbjct: 67 VETRLAGLLFELKMIHPELDERLEERFGRETAELVGGVRQLMRFHSLTFQAPQQEVLRGK 126
Query: 209 LGHEELADRLHNMRTIYALPPAKARAV---------------------------AQETLL 241
++ A ++ +R + + R V A+ET
Sbjct: 127 HAAQQAASQVETLRKMLLAMASDMRVVLVRLASRVATLRYFAETKQENDASRQYARETFE 186
Query: 242 IWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
++ LA+RLG+W LK ELEDL F +P ++++
Sbjct: 187 LYAPLANRLGIWQLKWELEDLSFRFQEPATYKRI 220
>gi|386333316|ref|YP_006029485.1| GTP diphosphokinase [Ralstonia solanacearum Po82]
gi|334195764|gb|AEG68949.1| GTP diphosphokinase [Ralstonia solanacearum Po82]
Length = 746
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/159 (47%), Positives = 99/159 (62%), Gaps = 20/159 (12%)
Query: 375 VAC---EEALEKELLI--------STSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKV 423
+AC E+ +E+E I T + G+ +S R K +YSI+ KMR K++ +
Sbjct: 217 IACLLDEKRIEREKFIGEAIARLQQTLHDAGIHAEVSGRPKHIYSIWRKMRGKELDFADL 276
Query: 424 YDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHT 483
YD RA RV+V D I+ CY++L VH +W PI EFDDYI PK +GY SLHT
Sbjct: 277 YDVRAFRVIVDD---------IKDCYTVLGFVHHMWQPIPKEFDDYISRPKANGYMSLHT 327
Query: 484 AVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
V G DG ALEVQIRT++MH +AE+G+AAHW YKE G+K
Sbjct: 328 VVIGDDGRALEVQIRTREMHHFAEYGVAAHWRYKEAGSK 366
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 79/180 (43%), Gaps = 31/180 (17%)
Query: 122 TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAK 181
TG+P ++H T IL L + ++ A L + A ++ +IE FG EVA+
Sbjct: 43 TGEPLVSHARGTVAILEGL-----RVDAPSLQAAALFLLPTLAADNEKAIEPAFGAEVAR 97
Query: 182 LVAGVSRLSYINQLL------------------RRHRRINVNQGTLGHEE--------LA 215
LV V +L I + RR + + + L + LA
Sbjct: 98 LVHDVRQLLRIGAIAGMVSPAETNVTRKNEAEARRAQVEALRKMLLAFAQDIRVVLIRLA 157
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
RL ++R + +A+ETL I+ LA+RLG+W LK ELEDL F ++++
Sbjct: 158 SRLQSLRWLAQNKLPAPEGMARETLDIYAPLANRLGIWQLKWELEDLGFRFEDSDTYKRI 217
>gi|302784096|ref|XP_002973820.1| hypothetical protein SELMODRAFT_100367 [Selaginella moellendorffii]
gi|300158152|gb|EFJ24775.1| hypothetical protein SELMODRAFT_100367 [Selaginella moellendorffii]
Length = 542
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 117/201 (58%), Gaps = 25/201 (12%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ +F D + KA A+ AH G FR++G+ YLTHC+ T A+L+ S+G A V AG
Sbjct: 10 HKVFKDPFIIKAFRLAEEAHRGHFRRSGELYLTHCVET----AILLASAGAEAT-VVAAG 64
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE--- 212
+LHD +DD+ I FGD+VA LV GVS++S ++QL R + N+ TL +
Sbjct: 65 LLHDTLDDSSIDEAQIRAIFGDDVADLVVGVSKISQLSQLARDN---NIASKTLEADRLR 121
Query: 213 --------------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 258
+LADRLHNMRT+ AL K +A ETL I +A+RLG+W+ KAE
Sbjct: 122 TMFLAMVDVRVVLIKLADRLHNMRTLEALAAEKQNRIASETLEILVPIANRLGIWSWKAE 181
Query: 259 LEDLCFAVLQPQIFRKMRADL 279
+EDLCF L P ++++ A L
Sbjct: 182 MEDLCFKYLNPTEYQELAAKL 202
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 95/159 (59%), Gaps = 17/159 (10%)
Query: 367 AGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDA 426
G+ L+++ E L+K L S I L R K+L+SI++KM++K I ++YD
Sbjct: 208 GGVVLSAI----EQLDKALRKSKIKIED----LCGRSKTLFSIYTKMKKKGRSIDEIYDV 259
Query: 427 RALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ 486
R LR++V D+ CY L+ VH+LW I G+ DYI PK +GYQSLHT V
Sbjct: 260 RGLRLIVKDEAD---------CYKALEFVHKLWDHIPGKLKDYIKQPKANGYQSLHTVVS 310
Query: 487 GPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQS 525
G DG LEVQIRT++MH +AE G+AAHW YKE + S
Sbjct: 311 GKDGLPLEVQIRTKEMHSHAEFGMAAHWRYKEGNDTKHS 349
>gi|332528308|ref|ZP_08404308.1| (p)ppGpp synthetase I SpoT/RelA [Hylemonella gracilis ATCC 19624]
gi|332042179|gb|EGI78505.1| (p)ppGpp synthetase I SpoT/RelA [Hylemonella gracilis ATCC 19624]
Length = 739
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
GMEV + R K +YSI KMR K + ++YD RALRVVV D + CY+ L
Sbjct: 233 GMEVEVQGRPKHIYSIIRKMRGKSLDFDRIYDVRALRVVVSD---------VPACYAALS 283
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
VH + P+ EFDDYI PKP+GYQSLHT V+ +G A+E+QIRTQ MHE+AE G+AAH
Sbjct: 284 WVHSHYTPVVEEFDDYIARPKPNGYQSLHTVVRDAEGRAIEIQIRTQAMHEHAELGVAAH 343
Query: 514 WLYKETGNK 522
W YKE G K
Sbjct: 344 WAYKEAGAK 352
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 18/110 (16%)
Query: 173 EEFGDEVAKLVAGVSRLSYINQLL---RRHRRINVNQGTLGHEELADRLHNMRTIYA--- 226
E+ G E A + G ++ + ++L R R+ + + LA RL +R A
Sbjct: 105 EKTGSEAAGMDLGAVQIENVRKMLLAFSRDLRVVLLR-------LASRLQTLRWFAASKR 157
Query: 227 -LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
LPP +A E+L ++ LA+RLG+W +K E+EDL F L+P ++ +
Sbjct: 158 PLPPG----LAAESLHVFAPLANRLGIWEIKWEMEDLAFRFLEPDTYKHI 203
Score = 40.8 bits (94), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 710 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 769
+ +++ + K+ +LR +L WE+ L +S + G A G +V+ + ++ P I
Sbjct: 359 TADSAYDAKIAVLRQLLAWEQDL---SSGKDESASGLARGAAGAVLDDRIYVLT-PQATI 414
Query: 770 MRLRSGSTAADAAMKV----GLEGKLVLVNGQLVLPNTELKDGDIVEV 813
+ L G+T D A + G + V+G +V NT LK+G VE+
Sbjct: 415 VDLPQGATPVDFAYSLHTDLGHHCRGARVDGAMVPLNTPLKNGQTVEI 462
>gi|333915501|ref|YP_004489233.1| (p)ppGpp synthetase I SpoT/RelA [Delftia sp. Cs1-4]
gi|333745701|gb|AEF90878.1| (p)ppGpp synthetase I, SpoT/RelA [Delftia sp. Cs1-4]
Length = 749
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+ T+ R K +YSI KMR K + +V+D RA+RVVV P I+ CY+ L
Sbjct: 262 ISATVQGRPKHIYSIVKKMRGKSLNFDQVFDIRAMRVVV---------PTIKDCYATLSW 312
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH + PI+ EFDDYI PKP+GYQSLHT V+ G A+E+QIRTQ MH++AEHG+AAHW
Sbjct: 313 VHEQFTPIEAEFDDYIAKPKPNGYQSLHTVVRDETGRAIEIQIRTQAMHDHAEHGVAAHW 372
Query: 515 LYKETGNK 522
YKE G K
Sbjct: 373 AYKEAGTK 380
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 20/125 (16%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQLLR------------RHRRINVNQGTLGHEE----- 213
I + FG+ A L ++L + Q R + NV + LG
Sbjct: 107 IAKAFGENFATLAVETNKLMRVQQQARGAELGGQYLDDEATQTENVRKMLLGFSRDLRVV 166
Query: 214 ---LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
LA RL +R A + +A+E L ++ LA+RLG+W +K ELEDL L+P+
Sbjct: 167 LLRLASRLQTLRYYAASKRPVSPGIAREALTVFAPLANRLGIWQIKWELEDLSLRFLEPE 226
Query: 271 IFRKM 275
+R++
Sbjct: 227 TYREV 231
>gi|374584179|ref|ZP_09657271.1| LOW QUALITY PROTEIN: hypothetical protein Lepil_0327 [Leptonema
illini DSM 21528]
gi|373873040|gb|EHQ05034.1| LOW QUALITY PROTEIN: hypothetical protein Lepil_0327 [Leptonema
illini DSM 21528]
Length = 690
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 103/168 (61%), Gaps = 20/168 (11%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+ R K LYS++SKM++ GIH++YD R +R++V + I+ CY L IVH L
Sbjct: 249 IDGRAKHLYSVYSKMQKYGKGIHEIYDLRGVRIIVDE---------IRDCYGALGIVHTL 299
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK- 517
W P+ G F DYI PK +GYQSLHT V GPDG LEVQIRTQ+M E AEHG+AAHWLYK
Sbjct: 300 WPPLPGRFKDYIAMPKSNGYQSLHTTVVGPDGRPLEVQIRTQEMDERAEHGIAAHWLYKN 359
Query: 518 ----ETGNK-----LQSISSMDESDIEASSSLSKD-TDDHNPLDTDLF 555
E G++ L+++S + + S +D D+ NP D +F
Sbjct: 360 DMRAERGDQGKLEWLRTLSRITQEFQGDSKDFIEDLRDELNPKDVYVF 407
Score = 106 bits (265), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 107/202 (52%), Gaps = 29/202 (14%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P + +++A FA RAH Q R +G+PY+ H + + M + ++ T+ A +
Sbjct: 27 PSVDLRTIRRAFLFAHRAHKDQRRLSGEPYIIHPV----LAEMGLDTA------TIAAAL 76
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYI-----------NQLLRRHRRINVN 205
LHDVV+D SI EFG+EV LV V+++S + ++L R N+
Sbjct: 77 LHDVVEDTSFGEDSIRREFGEEVNMLVRAVTKISLVKKDSMKDQKPSSELKAREAAENIR 136
Query: 206 QGTLGHE--------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKA 257
L +LAD+LHNM+T+ P K +A+E + I+ +A RLG++ +K+
Sbjct: 137 LMLLATTRDVRVILIKLADKLHNMQTLGFQKPHKVERIAREVIDIYAPIAGRLGMFRMKS 196
Query: 258 ELEDLCFAVLQPQIFRKMRADL 279
ELEDL F LQP+ F ++++L
Sbjct: 197 ELEDLAFGALQPEEFETLQSEL 218
Score = 39.7 bits (91), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 752 DSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKV----GLEGKLVLVNGQLVLPNTELKD 807
D + P +V + P G+I+ L GST D A ++ GL K VN ++V TEL+
Sbjct: 397 DELNPKDVYVFT-PKGDIINLPQGSTVLDFAFRIHTDIGLRCKSAKVNDRIVPLRTELRS 455
Query: 808 GDIVEV 813
GD +E+
Sbjct: 456 GDRIEI 461
>gi|313897335|ref|ZP_07830878.1| GTP diphosphokinase [Clostridium sp. HGF2]
gi|312957705|gb|EFR39330.1| GTP diphosphokinase [Clostridium sp. HGF2]
Length = 733
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 118/426 (27%), Positives = 194/426 (45%), Gaps = 102/426 (23%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
N + + +A A++ H GQ+RK+G+PY+ H I G IL ML +G + T+ AG LHD
Sbjct: 25 NIDLITRAYLCAEKNHTGQYRKSGEPYIIHAIQVGYILTML--RTGPK---TIAAGFLHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRL- 218
VV+D ++ + + FG+EVA LV V+++ G L ++ + L
Sbjct: 80 VVEDCDVTIQEMSDMFGEEVASLVESVTKI-----------------GALKFKDEKEYLA 122
Query: 219 HNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRAD 278
N R I+ A+A++ +I LA RL + L + ++P+ +K+ ++
Sbjct: 123 SNHRKIFI-------AMAKDVRVILIKLADRLH------NMRTLQY--MRPEKQKKIASE 167
Query: 279 LASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDI 337
+++P +R+G S +K+ LE + F
Sbjct: 168 TLEVYAPIAHRLGIS-------------------------------DIKNELEDLC-FQY 195
Query: 338 LSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEV 397
L+ + +++AK E +K + +E +++ + +S + +
Sbjct: 196 LNKEK-----YYEIAKLVEKRKTER---------------DEQVQRMIADISSLLDAHHI 235
Query: 398 --TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIV 455
+ R K LYSI+ KM K+ ++ D A+R++ CY L +
Sbjct: 236 GYRIFGRSKHLYSIYKKMMTKNKRFEEILDLLAIRIITDTDTA---------CYETLGYI 286
Query: 456 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 515
H + PI G F DYI PK + YQSLHT + DG+ EVQIRT+ M AE G+AAHW
Sbjct: 287 HAKYRPIPGRFKDYIAMPKVNMYQSLHTTIVAEDGNIFEVQIRTEAMDAVAEQGIAAHWR 346
Query: 516 YKETGN 521
YKE N
Sbjct: 347 YKENIN 352
>gi|121605432|ref|YP_982761.1| (p)ppGpp synthetase I SpoT/RelA [Polaromonas naphthalenivorans CJ2]
gi|120594401|gb|ABM37840.1| (p)ppGpp synthetase I, SpoT/RelA [Polaromonas naphthalenivorans
CJ2]
Length = 756
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 90/141 (63%), Gaps = 10/141 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ + R K +YSI KMR K +G +V+D RALRV+ D G CY+ L
Sbjct: 252 GIAALVQGRPKHIYSIVKKMRGKSLGFDQVFDIRALRVIAADVKG---------CYAALG 302
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
VH + P++GEFDDYI PKP+GYQSLHT V+ G A+E+QIRTQ MH++AE+G+AAH
Sbjct: 303 FVHSCFSPVNGEFDDYIAKPKPNGYQSLHTVVRDEGGRAMEIQIRTQAMHDHAENGVAAH 362
Query: 514 WLYKETGNK-LQSISSMDESD 533
W YKE G K +S+ E D
Sbjct: 363 WAYKEAGTKGYAGVSASSEYD 383
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 84/194 (43%), Gaps = 33/194 (17%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A AFA+ + TG+ L H ++ +L G AV ++H +C
Sbjct: 38 RARAFAEPLIASEVMDTGENILAHA---DAVVGILKTIGGSEAVQAATY-LVH-----SC 88
Query: 166 ESLGS----IEEEFGDEVAKLVAGVSRLSYINQLLRR------------HRRINVNQGTL 209
+ L I + FG A L ++L Y+ + R + NV + L
Sbjct: 89 QHLNKPQDVIAKAFGPSYAALAVETTKLIYLQRQTRAVDAKSQLHDDPAAQTENVRRMLL 148
Query: 210 GHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 261
LA RL +R A A RA+A E+L ++ LA+RLG+W +K E+ED
Sbjct: 149 AFSRDLRVVMLRLASRLQTLRYYAASRQAAPRALAHESLHVFAPLANRLGIWQIKWEMED 208
Query: 262 LCFAVLQPQIFRKM 275
L F L+P ++++
Sbjct: 209 LAFRFLEPDTYKQI 222
>gi|160898297|ref|YP_001563879.1| (p)ppGpp synthetase I SpoT/RelA [Delftia acidovorans SPH-1]
gi|160363881|gb|ABX35494.1| (p)ppGpp synthetase I, SpoT/RelA [Delftia acidovorans SPH-1]
Length = 749
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+ T+ R K +YSI KMR K + +V+D RA+RVVV P I+ CY+ L
Sbjct: 262 ISATVQGRPKHIYSIVKKMRGKSLNFDQVFDIRAMRVVV---------PTIKDCYATLSW 312
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH + PI+ EFDDYI PKP+GYQSLHT V+ G A+E+QIRTQ MH++AEHG+AAHW
Sbjct: 313 VHEQFTPIEAEFDDYIAKPKPNGYQSLHTVVRDETGRAIEIQIRTQAMHDHAEHGVAAHW 372
Query: 515 LYKETGNK 522
YKE G K
Sbjct: 373 AYKEAGTK 380
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 20/125 (16%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQLLR------------RHRRINVNQGTLGHEE----- 213
I + FG+ A L ++L + Q R + NV + LG
Sbjct: 107 IAKAFGENFATLAVETNKLMRVQQQARGAELGGQYLDDEATQTENVRKMLLGFSRDLRVV 166
Query: 214 ---LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
LA RL +R A + +A+E L ++ LA+RLG+W +K ELEDL L+P+
Sbjct: 167 LLRLASRLQTLRYYAASKRPVSPGIAREALTVFAPLANRLGIWQIKWELEDLSLRFLEPE 226
Query: 271 IFRKM 275
+R++
Sbjct: 227 TYREV 231
>gi|187477599|ref|YP_785623.1| GTP pyrophosphokinase [Bordetella avium 197N]
gi|115422185|emb|CAJ48709.1| putative GTP pyrophosphokinase [Bordetella avium 197N]
Length = 743
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 104/164 (63%), Gaps = 17/164 (10%)
Query: 378 EEALEKELLISTSYI--------PGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARAL 429
E+ +++E I+ + + G++ +S R K +YSI++K R K + K+YD RAL
Sbjct: 225 EKRVQREAFITDTIVRIQAVLARAGIKGEVSGRPKHIYSIWNKTRIKGLDFSKLYDLRAL 284
Query: 430 RVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD 489
RV+V D ++ CYS L +VH LW PI EFDDYI PKP+GY+SLHT V +
Sbjct: 285 RVIVDD---------VRDCYSALALVHELWTPIPEEFDDYISRPKPNGYRSLHTVVMDEE 335
Query: 490 GSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESD 533
G A EVQIRT++MH++AE+G+AAHW YKE G K +++ + D
Sbjct: 336 GRAFEVQIRTREMHQFAEYGMAAHWRYKEAGAKGGQVAASSDYD 379
Score = 47.0 bits (110), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 175 FGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE-----------------LADR 217
FG EV +LV G L + + R+ G+ + LA R
Sbjct: 102 FGAEVVRLVQGARALLRLGVVARQAADTAAVTGSQKEMQRKMLLAMAADLRIVLMRLASR 161
Query: 218 LHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
L ++R A A+ETL ++ LA+RLG+W +K E+EDL F L+P ++++
Sbjct: 162 LQSLRWHAETKTPCNPAFARETLDLYTPLANRLGIWQIKWEMEDLSFRFLEPDRYKEI 219
>gi|346314576|ref|ZP_08856095.1| hypothetical protein HMPREF9022_01752 [Erysipelotrichaceae
bacterium 2_2_44A]
gi|373124054|ref|ZP_09537896.1| RelA/SpoT family protein [Erysipelotrichaceae bacterium 21_3]
gi|422327153|ref|ZP_16408180.1| RelA/SpoT family protein [Erysipelotrichaceae bacterium 6_1_45]
gi|345906311|gb|EGX76040.1| hypothetical protein HMPREF9022_01752 [Erysipelotrichaceae
bacterium 2_2_44A]
gi|371659886|gb|EHO25146.1| RelA/SpoT family protein [Erysipelotrichaceae bacterium 21_3]
gi|371663847|gb|EHO29031.1| RelA/SpoT family protein [Erysipelotrichaceae bacterium 6_1_45]
Length = 739
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 117/426 (27%), Positives = 192/426 (45%), Gaps = 102/426 (23%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
N + + +A A++ H GQ+RK+G+PY+ H I G IL ML + T+ AG LHD
Sbjct: 31 NIDLITRAYLCAEKNHTGQYRKSGEPYIIHAIQVGYILTML-----RTGPKTIAAGFLHD 85
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRL- 218
VV+D ++ + + FG+EVA LV V+++ G L ++ + L
Sbjct: 86 VVEDCDVTIQEMSDMFGEEVASLVESVTKI-----------------GALKFKDEKEYLA 128
Query: 219 HNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRAD 278
N R I+ A+A++ +I LA RL + L + ++P+ +K+ ++
Sbjct: 129 SNHRKIFI-------AMAKDVRVILIKLADRLH------NMRTLQY--MRPEKQKKIASE 173
Query: 279 LASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDI 337
+++P +R+G S +K+ LE + F
Sbjct: 174 TLEVYAPIAHRLGIS-------------------------------DIKNELEDLC-FQY 201
Query: 338 LSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEV 397
L+ + +++AK E +K + +E +++ + +S + +
Sbjct: 202 LNKEK-----YYEIAKLVEKRKTER---------------DEQVQRMIADISSLLDAHHI 241
Query: 398 --TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIV 455
+ R K LYSI+ KM K+ ++ D A+R++ CY L +
Sbjct: 242 GYRIFGRSKHLYSIYKKMMTKNKRFEEILDLLAIRIITDTDTA---------CYETLGYI 292
Query: 456 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 515
H + PI G F DYI PK + YQSLHT + DG+ EVQIRT+ M AE G+AAHW
Sbjct: 293 HAKYRPIPGRFKDYIAMPKVNMYQSLHTTIVAEDGNIFEVQIRTEAMDAVAEQGIAAHWR 352
Query: 516 YKETGN 521
YKE N
Sbjct: 353 YKENIN 358
>gi|237748987|ref|ZP_04579467.1| GTP pyrophosphokinase [Oxalobacter formigenes OXCC13]
gi|229380349|gb|EEO30440.1| GTP pyrophosphokinase [Oxalobacter formigenes OXCC13]
Length = 747
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/130 (52%), Positives = 87/130 (66%), Gaps = 9/130 (6%)
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI++KMR K + ++YD RA+R++V D I+ C+++LDIV+RLW P
Sbjct: 255 RPKHIYSIYNKMRGKSLDFSQMYDLRAVRIIVDD---------IKSCFTVLDIVNRLWTP 305
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
I EFDDYI PKP+GYQSLHT V +G EVQIRTQ+MH AE+G+AAHW YKETG
Sbjct: 306 ILEEFDDYISRPKPNGYQSLHTVVVAENGQPFEVQIRTQEMHRLAEYGVAAHWRYKETGG 365
Query: 522 KLQSISSMDE 531
DE
Sbjct: 366 STFVAQQYDE 375
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 91/210 (43%), Gaps = 30/210 (14%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
++V +A FAK ++ ++G+ + + G ILA L S R+ AG+L +
Sbjct: 24 KKVMEAYVFAKESYGDIHIESGELAIDYSKAIGLILAELNTDSQTRS-----AGLLAVLP 78
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI----NVNQGTLGHEE---- 213
E IE FG EV+ LV V +L + L I N Q E
Sbjct: 79 RYNPEIASQIESRFGVEVSNLVDSVIKLFKLRDLTGNLEEIAQGKNAAQIRKAQAETLRK 138
Query: 214 ---------------LADRLHNMRTIYALPP--AKARAVAQETLLIWCSLASRLGLWALK 256
LA R+ ++R + + + R A+ETL I+ LA+RLG+W +K
Sbjct: 139 MLLAMAADMRVVMIRLAARMASLRYLAKIKKDTSDRRQYAKETLEIYAPLANRLGIWQVK 198
Query: 257 AELEDLCFAVLQPQIFRKMRADLASMWSPR 286
ELEDL F ++P ++ + L + R
Sbjct: 199 WELEDLSFRFIEPDAYKNIAKSLEEKRTER 228
>gi|309775429|ref|ZP_07670432.1| GTP diphosphokinase [Erysipelotrichaceae bacterium 3_1_53]
gi|308916818|gb|EFP62555.1| GTP diphosphokinase [Erysipelotrichaceae bacterium 3_1_53]
Length = 733
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 118/426 (27%), Positives = 194/426 (45%), Gaps = 102/426 (23%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
N + + +A A++ H GQ+RK+G+PY+ H I G IL ML +G + T+ AG LHD
Sbjct: 25 NIDLITRAYLCAEKNHTGQYRKSGEPYIIHAIQVGYILTML--RTGPK---TIAAGFLHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRL- 218
VV+D ++ + + FG+EVA LV V+++ G L ++ + L
Sbjct: 80 VVEDCDVTIQEMSDMFGEEVASLVESVTKI-----------------GALKFKDEKEYLA 122
Query: 219 HNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRAD 278
N R I+ A+A++ +I LA RL + L + + P+ +K+ ++
Sbjct: 123 SNHRKIFI-------AMAKDVRVILIKLADRLH------NMRTLQY--MTPEKQKKIASE 167
Query: 279 LASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDI 337
+++P +R+G S +K+ LE + F
Sbjct: 168 TLEVYAPIAHRLGIS-------------------------------DIKNELEDLC-FQY 195
Query: 338 LSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEV 397
L++ + +++AK E +K + +E +++ + +S + +
Sbjct: 196 LNNEK-----YYEIAKLVEKRKTER---------------DEQVQRMIADISSLLDAHHI 235
Query: 398 --TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIV 455
+ R K LYSI+ KM K+ ++ D A+R++ CY L +
Sbjct: 236 GYRIFGRSKHLYSIYKKMITKNKRFEEILDLLAIRIITDSDTA---------CYETLGYI 286
Query: 456 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 515
H + PI G F DYI PK + YQSLHT + DG+ EVQIRT+ M AE G+AAHW
Sbjct: 287 HAKYRPIPGRFKDYIAMPKVNMYQSLHTTIVAEDGNIFEVQIRTEAMDAVAEQGIAAHWR 346
Query: 516 YKETGN 521
YKE N
Sbjct: 347 YKENLN 352
>gi|413962948|ref|ZP_11402175.1| (p)ppGpp synthetase SpoT/RelA [Burkholderia sp. SJ98]
gi|413928780|gb|EKS68068.1| (p)ppGpp synthetase SpoT/RelA [Burkholderia sp. SJ98]
Length = 740
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/142 (51%), Positives = 96/142 (67%), Gaps = 14/142 (9%)
Query: 381 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 440
L+KEL T++I + +S R K +YSI+ KMR K + ++ D RA RV+VGD
Sbjct: 230 LQKEL--ETAHI---KADVSGRPKHIYSIWKKMRGKQLDFAELNDVRAFRVIVGD----- 279
Query: 441 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 500
I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRT
Sbjct: 280 ----IKDCYTVLGIVHNLWQPVPREFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTY 335
Query: 501 KMHEYAEHGLAAHWLYKETGNK 522
+MH++AE+G+AAHW YKE G +
Sbjct: 336 EMHQFAEYGVAAHWRYKEAGAR 357
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 78/198 (39%), Gaps = 31/198 (15%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ A+AF + TG+ H T RI+ L S A + H +DD
Sbjct: 16 IDDALAFVREHAKDARVSTGELLADHAAGTARIMQTLNVDSHAVAAAALFVLAPH--LDD 73
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE----------- 212
+ I E FG EV +LV V +L + + R + + T +
Sbjct: 74 PEKV---IAERFGPEVQRLVGDVRKLLRLGSVSSRATLAELPENTRDAQAARRAQVEALR 130
Query: 213 ---------------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKA 257
LA R+ +R A + V +ETL I+ LA+RLG+W LK
Sbjct: 131 KMLLAFAQDIRVVLIRLASRVQTLRYYAAHKIEPSPDVPRETLEIYAPLANRLGIWQLKW 190
Query: 258 ELEDLCFAVLQPQIFRKM 275
ELEDL F P ++++
Sbjct: 191 ELEDLSFRFEDPVTYKRI 208
>gi|126667182|ref|ZP_01738156.1| GTP pyrophosphokinase [Marinobacter sp. ELB17]
gi|126628338|gb|EAZ98961.1| GTP pyrophosphokinase [Marinobacter sp. ELB17]
Length = 743
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/181 (45%), Positives = 112/181 (61%), Gaps = 19/181 (10%)
Query: 346 KFLHDLAKSSEAQKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSRLK 404
++LH+ A +K AK++ + + S + ALE EL + G++ +S R+K
Sbjct: 216 RYLHETA----YKKIAKLLDEKRLNRESYIKRVVAALESELGST-----GIKGDVSGRVK 266
Query: 405 SLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDG 464
+YSI+ KMRRK + +VYD RA+R++V P ++ CY++L IVH LW I
Sbjct: 267 HIYSIWRKMRRKGIDFSQVYDVRAVRILV---------PEVRDCYAVLGIVHGLWRHIPN 317
Query: 465 EFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQ 524
EFDDYI N K +GYQSLHTAV GP+G +EVQIRT MHE AE G+ AHWLYK T K +
Sbjct: 318 EFDDYIANVKENGYQSLHTAVIGPEGKVMEVQIRTHDMHEEAELGVCAHWLYKGTDTKNK 377
Query: 525 S 525
S
Sbjct: 378 S 378
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 89/191 (46%), Gaps = 29/191 (15%)
Query: 131 IHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLS 190
I R+LA L ++ A +L+ V + +L ++ +EFGDEVA L++GV +++
Sbjct: 69 IEMARVLAELHLDQA-----SLTAAVLYRAVREERVTLEAVRKEFGDEVAGLISGVLQMA 123
Query: 191 YINQL------------------LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKA 232
I+ + +R+ V+ + +LA+R +R + P K
Sbjct: 124 AISSIHHPLKGNVLGQSEGQLDNVRKMLVTMVDDVRVALIKLAERTCAIRGVKDALPEKR 183
Query: 233 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR--NRVG 290
VA+E I+ LA RLG+ +K ELEDL F L ++K +A + + NR
Sbjct: 184 MRVAREVSDIYAPLAHRLGIGYIKWELEDLSFRYLHETAYKK----IAKLLDEKRLNRES 239
Query: 291 YSRRITTIVSS 301
Y +R+ + S
Sbjct: 240 YIKRVVAALES 250
>gi|377820441|ref|YP_004976812.1| (p)ppGpp synthetase SpoT/RelA [Burkholderia sp. YI23]
gi|357935276|gb|AET88835.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Burkholderia sp. YI23]
Length = 740
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/142 (51%), Positives = 95/142 (66%), Gaps = 14/142 (9%)
Query: 381 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 440
L+KEL T++I +S R K +YSI+ KMR K + ++ D RA RV+VGD
Sbjct: 230 LQKEL--DTAHI---RADVSGRPKHIYSIWKKMRGKHLDFSELNDVRAFRVIVGD----- 279
Query: 441 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 500
I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRT
Sbjct: 280 ----IKDCYTVLGIVHNLWQPVPREFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTY 335
Query: 501 KMHEYAEHGLAAHWLYKETGNK 522
+MH++AE+G+AAHW YKE G +
Sbjct: 336 EMHQFAEYGVAAHWRYKEAGTR 357
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 84/199 (42%), Gaps = 33/199 (16%)
Query: 104 VQKAIAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
+ A+AF R H G R TG+ H + T RI+ L + A + H +D
Sbjct: 16 IDGALAFV-REHAGDARVSTGELLADHAVGTARIVQTLNVDAHAVAAAALFVLAPH--LD 72
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE---------- 212
D + I E FG EV +LV V +L + + R ++ + T +
Sbjct: 73 DPDKV---IAERFGPEVQRLVGDVRKLLRLGSVSSRATLADLPENTRDAQAARRAQVEAL 129
Query: 213 ----------------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 256
LA R+ ++R A + V +ETL I+ LA+RLG+W LK
Sbjct: 130 RKMLLAFAQDIRVVLIRLASRVQSLRYHAAHKIDPSPDVPRETLEIYAPLANRLGIWQLK 189
Query: 257 AELEDLCFAVLQPQIFRKM 275
ELEDL F P ++++
Sbjct: 190 WELEDLSFRFEDPVTYKRI 208
>gi|163856045|ref|YP_001630343.1| GTP pyrophosphokinase [Bordetella petrii DSM 12804]
gi|163259773|emb|CAP42074.1| GTP pyrophosphokinase [Bordetella petrii]
Length = 745
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 94/144 (65%), Gaps = 9/144 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI++KMR K + ++YD RALRV+V D ++ CY+ L
Sbjct: 251 GIHAEVSGRPKHIYSIWNKMRLKGLEFSQMYDLRALRVIVDD---------VRDCYTALG 301
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH +W P+ EFDDYI PKP+GY+SLHT V DG EVQIRT+ MH++AE+G+AAH
Sbjct: 302 MVHDMWTPLPDEFDDYISRPKPNGYRSLHTVVADDDGRPFEVQIRTRGMHQFAEYGMAAH 361
Query: 514 WLYKETGNKLQSISSMDESDIEAS 537
W YKE G K +++ E D + S
Sbjct: 362 WRYKEAGAKGGQVAASSEYDRQLS 385
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 79/190 (41%), Gaps = 17/190 (8%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
++++A+A+A GQ TG+P H RILA L R + A
Sbjct: 32 RIERAVAWATPQFAGQHTVTGEPLARHAAGAVRILAGLQTDVAVRIAALLAALPADLTQP 91
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--------- 213
I EFG EVA+LV G L + + R + G +
Sbjct: 92 APPLRNDPIAAEFGAEVARLVQGARALLRLGLVARHASDSEADSGDQKEMQRKMLLAMAA 151
Query: 214 --------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFA 265
LA RL +R A A+ETL ++ LA+RLG+W +K E+EDL F
Sbjct: 152 DLRIVLMRLASRLQTLRWHAESKAPCTPAFARETLDLYAPLANRLGIWQVKWEMEDLAFR 211
Query: 266 VLQPQIFRKM 275
L+P ++++
Sbjct: 212 FLEPDRYKQI 221
>gi|207742944|ref|YP_002259336.1| gtp pyrophosphokinase (atp:gtp 3'-pyrophosphotransferase) protein
[Ralstonia solanacearum IPO1609]
gi|206594339|emb|CAQ61266.1| gtp pyrophosphokinase (atp:gtp 3'-pyrophosphotransferase) protein
[Ralstonia solanacearum IPO1609]
Length = 746
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/137 (51%), Positives = 90/137 (65%), Gaps = 9/137 (6%)
Query: 386 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 445
L T + G+ +S R K +YSI+ KMR K++ +YD RA RV+V D I
Sbjct: 239 LQQTLHDAGIHAEVSGRPKHIYSIWRKMRGKELDFADLYDVRAFRVIVDD---------I 289
Query: 446 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 505
+ CY++L VH +W PI EFDDYI PK +GY SLHT V G DG ALEVQIRT++MH +
Sbjct: 290 KDCYTVLGFVHHMWQPIPKEFDDYISRPKANGYMSLHTVVIGDDGRALEVQIRTREMHHF 349
Query: 506 AEHGLAAHWLYKETGNK 522
AE+G+AAHW YKE G+K
Sbjct: 350 AEYGVAAHWRYKEAGSK 366
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 79/180 (43%), Gaps = 31/180 (17%)
Query: 122 TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAK 181
TG+P ++H T IL L + ++ A L + A ++ +IE FG EVA+
Sbjct: 43 TGEPLVSHARGTVAILEGL-----RVDAPSLQAAALFLLPTLAADNEKAIEPAFGAEVAR 97
Query: 182 LVAGVSRLSYINQLL------------------RRHRRINVNQGTLGHEE--------LA 215
LV V +L I + RR + + + L + LA
Sbjct: 98 LVHDVRQLLRIGAIAGMVSPAETNVTRKNEAEARRAQVEALRKMLLAFAQDIRVVLIRLA 157
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
RL ++R + +A+ETL I+ LA+RLG+W LK ELEDL F ++++
Sbjct: 158 SRLQSLRWLAQNKLPAPEGMARETLDIYAPLANRLGIWQLKWELEDLGFRFEDSDTYKRI 217
>gi|421887916|ref|ZP_16319044.1| GTP diphosphokinase [Ralstonia solanacearum K60-1]
gi|378966725|emb|CCF95792.1| GTP diphosphokinase [Ralstonia solanacearum K60-1]
Length = 746
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/137 (51%), Positives = 90/137 (65%), Gaps = 9/137 (6%)
Query: 386 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 445
L T + G+ +S R K +YSI+ KMR K++ +YD RA RV+V D I
Sbjct: 239 LQQTLHDAGIHAEVSGRPKHIYSIWRKMRGKELDFADLYDVRAFRVIVDD---------I 289
Query: 446 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 505
+ CY++L VH +W PI EFDDYI PK +GY SLHT V G DG ALEVQIRT++MH +
Sbjct: 290 KDCYTVLGFVHHMWQPIPKEFDDYISRPKANGYMSLHTVVIGDDGRALEVQIRTREMHHF 349
Query: 506 AEHGLAAHWLYKETGNK 522
AE+G+AAHW YKE G+K
Sbjct: 350 AEYGVAAHWRYKEAGSK 366
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 82/188 (43%), Gaps = 32/188 (17%)
Query: 115 HHGQFRK-TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEE 173
H G R TG+P ++H T IL L + ++ A L + A ++ +IE
Sbjct: 35 HAGDHRTLTGEPLVSHARGTVAILDGL-----RVDAPSLQAAALFLLPTLAADNEKAIEP 89
Query: 174 EFGDEVAKLVAGVSRLSYINQLL------------------RRHRRINVNQGTLGHEE-- 213
FG EVA+LV V +L I + RR + + + L +
Sbjct: 90 AFGAEVARLVHDVRQLLRIGAIAGMVNPAETNVTRKNEAEARRAQVEALRKMLLAFAQDI 149
Query: 214 ------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL 267
LA RL ++R + +A+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 150 RVVLIRLASRLQSLRWLAQNKLPAPEGMARETLDIYAPLANRLGIWQLKWELEDLGFRFE 209
Query: 268 QPQIFRKM 275
++++
Sbjct: 210 DSDTYKRI 217
>gi|421897088|ref|ZP_16327461.1| probable gtp 3'-pyrophosphotransferase protein, partial [Ralstonia
solanacearum MolK2]
gi|206588253|emb|CAQ18811.1| probable gtp 3'-pyrophosphotransferase protein, partial [Ralstonia
solanacearum MolK2]
Length = 729
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/137 (51%), Positives = 90/137 (65%), Gaps = 9/137 (6%)
Query: 386 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 445
L T + G+ +S R K +YSI+ KMR K++ +YD RA RV+V D I
Sbjct: 222 LQQTLHDAGIHAEVSGRPKHIYSIWRKMRGKELDFADLYDVRAFRVIVDD---------I 272
Query: 446 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 505
+ CY++L VH +W PI EFDDYI PK +GY SLHT V G DG ALEVQIRT++MH +
Sbjct: 273 KDCYTVLGFVHHMWQPIPKEFDDYISRPKANGYMSLHTVVIGDDGRALEVQIRTREMHHF 332
Query: 506 AEHGLAAHWLYKETGNK 522
AE+G+AAHW YKE G+K
Sbjct: 333 AEYGVAAHWRYKEAGSK 349
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 79/180 (43%), Gaps = 31/180 (17%)
Query: 122 TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAK 181
TG+P ++H T IL L + ++ A L + A ++ +IE FG EVA+
Sbjct: 26 TGEPLVSHARGTVAILEGL-----RVDAPSLQAAALFLLPTLAADNEKAIEPAFGAEVAR 80
Query: 182 LVAGVSRLSYINQLL------------------RRHRRINVNQGTLGHEE--------LA 215
LV V +L I + RR + + + L + LA
Sbjct: 81 LVHDVRQLLRIGAIAGMVSPAETNVTRKNEAEARRAQVEALRKMLLAFAQDIRVVLIRLA 140
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
RL ++R + +A+ETL I+ LA+RLG+W LK ELEDL F ++++
Sbjct: 141 SRLQSLRWLAQNKLPAPEGMARETLDIYAPLANRLGIWQLKWELEDLGFRFEDSDTYKRI 200
>gi|344167567|emb|CCA79805.1| GTP diphosphokinase [blood disease bacterium R229]
Length = 746
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/137 (50%), Positives = 91/137 (66%), Gaps = 9/137 (6%)
Query: 386 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 445
L T + G+ +S R K +YSI+ KMR K++ +YD RA RV+V D I
Sbjct: 239 LQQTLHDAGIHAEVSGRPKHIYSIWRKMRGKELDFADLYDVRAFRVIVDD---------I 289
Query: 446 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 505
+ CY++L VH +W P+ EFDDYI PK +GY+SLHT V G DG ALEVQIRT++MH +
Sbjct: 290 KDCYTVLGFVHHMWQPVPREFDDYISRPKANGYKSLHTVVIGDDGRALEVQIRTREMHHF 349
Query: 506 AEHGLAAHWLYKETGNK 522
AE+G+AAHW YKE G+K
Sbjct: 350 AEYGVAAHWRYKEAGSK 366
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 80/181 (44%), Gaps = 33/181 (18%)
Query: 122 TGDPYLTHCIHTGRILAML-IPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVA 180
TG+P ++H T IL L + + +A + IL A + +IE FG EVA
Sbjct: 43 TGEPLVSHARGTVAILEGLRVDAPSLQAAALFLLPIL------ATGNEKAIEPAFGAEVA 96
Query: 181 KLVAGVSRLSYINQLL------------------RRHRRINVNQGTLGHEE--------L 214
+LV V +L I + RR + + + L + L
Sbjct: 97 RLVHDVRQLLRIGAIAGMVSPAEANVTRKNEAEARRAQVEALRKMLLAFAQDIRVVLIRL 156
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
A RL ++R + +A+ETL I+ LA+RLG+W LK ELEDL F P +++
Sbjct: 157 ASRLQSLRWLAQNKRPAPEGMARETLDIYAPLANRLGVWQLKWELEDLGFRFEDPDTYKR 216
Query: 275 M 275
+
Sbjct: 217 I 217
>gi|344174549|emb|CCA86347.1| GTP diphosphokinase [Ralstonia syzygii R24]
Length = 746
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/137 (50%), Positives = 91/137 (66%), Gaps = 9/137 (6%)
Query: 386 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 445
L T + G+ +S R K +YSI+ KMR K++ +YD RA RV+V D I
Sbjct: 239 LQQTLHDAGIHAEVSGRPKHIYSIWRKMRGKELDFADLYDVRAFRVIVDD---------I 289
Query: 446 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 505
+ CY++L VH +W P+ EFDDYI PK +GY+SLHT V G DG ALEVQIRT++MH +
Sbjct: 290 KDCYTVLGFVHHMWQPVPREFDDYISRPKANGYKSLHTVVIGDDGRALEVQIRTREMHHF 349
Query: 506 AEHGLAAHWLYKETGNK 522
AE+G+AAHW YKE G+K
Sbjct: 350 AEYGVAAHWRYKEAGSK 366
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 89/215 (41%), Gaps = 33/215 (15%)
Query: 88 VDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAML-IPSSGK 146
+G T + V +A+A+ TG+P ++H T IL L + +
Sbjct: 9 TEGAGATADRTAREAAVARALAYLDDRAGDHQTLTGEPLVSHARGTVAILEGLRVDAPSL 68
Query: 147 RAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLL---------- 196
+A + IL A + +IE FG EV +LV V +L I +
Sbjct: 69 QAAALFLLPIL------ATGNEKAIEPAFGAEVVRLVHDVRQLLRIGAIAGMVSPAEANV 122
Query: 197 --------RRHRRINVNQGTLGHEE--------LADRLHNMRTIYALPPAKARAVAQETL 240
RR + + + L + LA RL ++R + +A+ETL
Sbjct: 123 TRKNEAEARRAQVEALRKMLLAFAQDIRVVLIRLASRLQSLRWLAQNKRPAPEGMARETL 182
Query: 241 LIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 183 DIYAPLANRLGIWQLKWELEDLGFRFEDPDTYKRI 217
>gi|300691314|ref|YP_003752309.1| GTP diphosphokinase [Ralstonia solanacearum PSI07]
gi|299078374|emb|CBJ51024.1| GTP diphosphokinase [Ralstonia solanacearum PSI07]
Length = 746
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/137 (50%), Positives = 91/137 (66%), Gaps = 9/137 (6%)
Query: 386 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 445
L T + G+ +S R K +YSI+ KMR K++ +YD RA RV+V D I
Sbjct: 239 LQQTLHDAGIHAEVSGRPKHIYSIWRKMRGKELDFADLYDVRAFRVIVDD---------I 289
Query: 446 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 505
+ CY++L VH +W P+ EFDDYI PK +GY+SLHT V G DG ALEVQIRT++MH +
Sbjct: 290 KDCYTVLGFVHHMWQPVPREFDDYISRPKANGYKSLHTVVIGDDGRALEVQIRTREMHHF 349
Query: 506 AEHGLAAHWLYKETGNK 522
AE+G+AAHW YKE G+K
Sbjct: 350 AEYGVAAHWRYKEAGSK 366
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 80/181 (44%), Gaps = 33/181 (18%)
Query: 122 TGDPYLTHCIHTGRILAML-IPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVA 180
TG+P ++H T IL L + + +A + IL A + +IE FG EVA
Sbjct: 43 TGEPLVSHARGTVAILEGLRVDAPSLQAAALFLLPIL------ATGNEKAIEPAFGAEVA 96
Query: 181 KLVAGVSRLSYINQLL------------------RRHRRINVNQGTLGHEE--------L 214
+LV V +L I + RR + + + L + L
Sbjct: 97 RLVHDVRQLLRIGAIAGMVSPAEANVTRKNEAEARRAQVEALRKMLLAFAQDIRVVLIRL 156
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
A RL ++R + +A+ETL I+ LA+RLG+W LK ELEDL F P +++
Sbjct: 157 ASRLQSLRWLAQNKRPAPEGMARETLDIYAPLANRLGIWQLKWELEDLGFRFEDPDTYKR 216
Query: 275 M 275
+
Sbjct: 217 I 217
>gi|445497639|ref|ZP_21464494.1| GTP pyrophosphokinase RelA [Janthinobacterium sp. HH01]
gi|444787634|gb|ELX09182.1| GTP pyrophosphokinase RelA [Janthinobacterium sp. HH01]
Length = 752
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 89/138 (64%), Gaps = 9/138 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K +YSI+SKM+ K++ +YD RA RV+V D ++ CY++L
Sbjct: 253 GIQAEVFGRPKHIYSIWSKMKGKELDFTDLYDVRAFRVIVAD---------VKTCYTVLG 303
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH +W PI EFDDYI PK +GYQSLHT V DG LEVQIRTQ+MH +AE+G+AAH
Sbjct: 304 VVHNIWTPIPKEFDDYISRPKSNGYQSLHTVVTAEDGRPLEVQIRTQEMHGFAEYGVAAH 363
Query: 514 WLYKETGNKLQSISSMDE 531
W YKE G + DE
Sbjct: 364 WRYKEAGGSNFAGQKYDE 381
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 88/199 (44%), Gaps = 35/199 (17%)
Query: 107 AIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACE 166
A+ FA A+ + +G P + + LA S + V+T +AG++ ++
Sbjct: 30 ALDFASEAYGDKVCVSGQPAIDFAVGVAGTLA-----SMRTDVETRIAGLMFELTLLDTA 84
Query: 167 SLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH---------RRINVNQGTLGHEELADR 217
IE FG EV++LVAGV +L + +L + R N Q + E +
Sbjct: 85 QAPIIEPRFGHEVSELVAGVRQLIRLRELTQTQGQGQPGAVARGRNAAQMAVAQVETLRK 144
Query: 218 L-----HNMRTIYA----------------LPPAKARAVAQETLLIWCSLASRLGLWALK 256
+ +MR + L A +ETL ++ LA+RLG+W LK
Sbjct: 145 MLLAMASDMRVVLVRLASCVTTLRYFADIKLFNDMTCAYGRETLDLYAPLANRLGIWQLK 204
Query: 257 AELEDLCFAVLQPQIFRKM 275
ELEDL F ++P+ ++++
Sbjct: 205 WELEDLSFRFIEPEAYKRI 223
>gi|386286490|ref|ZP_10063680.1| GTP pyrophosphokinase [gamma proteobacterium BDW918]
gi|385280640|gb|EIF44562.1| GTP pyrophosphokinase [gamma proteobacterium BDW918]
Length = 745
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/138 (49%), Positives = 91/138 (65%), Gaps = 9/138 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
++ ++ R K +YSI+ KM+RK +G +VYD RA+RV+V P + CY+ L
Sbjct: 255 NIQADIAGRAKHIYSIWRKMQRKGIGFSQVYDIRAVRVLV---------PDTKSCYAALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW I EFDDYI NPK +GY+SLHTAV GPDG LE+QIRT+ MHE AE G+ +H
Sbjct: 306 LVHGLWRNIPNEFDDYIANPKENGYRSLHTAVIGPDGKVLEIQIRTRAMHEEAEFGVCSH 365
Query: 514 WLYKETGNKLQSISSMDE 531
W+YK +S +S DE
Sbjct: 366 WMYKGADKSAKSSNSYDE 383
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 74/144 (51%), Gaps = 19/144 (13%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL-------------- 195
D+++A L V ++ S+ ++E +FG VAKLV GV ++ I+++
Sbjct: 83 DSLIAATLFRAVRESRLSMSALERDFGRSVAKLVDGVLGMAAISRVNAELDAPVLGQSEA 142
Query: 196 ----LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLG 251
+R+ V+ + +LA+R +R + P + R VA+E I+ LA RLG
Sbjct: 143 QSETIRKMLVALVDDVRVALIKLAERTSAIRAVKNKPEKRYR-VAREVADIYAPLAHRLG 201
Query: 252 LWALKAELEDLCFAVLQPQIFRKM 275
+ +K ELEDL F LQP ++K+
Sbjct: 202 IGHIKWELEDLSFRYLQPLAYKKI 225
>gi|399545685|ref|YP_006558993.1| GTP pyrophosphokinase [Marinobacter sp. BSs20148]
gi|399161017|gb|AFP31580.1| GTP pyrophosphokinase [Marinobacter sp. BSs20148]
Length = 743
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/181 (44%), Positives = 113/181 (62%), Gaps = 19/181 (10%)
Query: 346 KFLHDLAKSSEAQKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSRLK 404
++LH+ A +K AK++ + + S + ALE EL + G++ +S R+K
Sbjct: 216 RYLHETA----YKKIAKLLDEKRLNRESYIKRVVAALESELGSA-----GIKGDVSGRVK 266
Query: 405 SLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDG 464
+YSI+ KMRRK + +VYD RA+R++V P ++ CY++L +VH LW I
Sbjct: 267 HIYSIWRKMRRKGIDFSQVYDVRAVRILV---------PEVRDCYAVLGVVHGLWRHIPN 317
Query: 465 EFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQ 524
EFDDYI N K +GYQSLHTAV GP+G +EVQIRT+ MHE AE G+ AHWLYK T K +
Sbjct: 318 EFDDYIANVKENGYQSLHTAVIGPEGKVMEVQIRTRDMHEEAELGVCAHWLYKGTDTKNK 377
Query: 525 S 525
S
Sbjct: 378 S 378
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 29/191 (15%)
Query: 131 IHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLS 190
I R+LA L ++ A +L+ V + +L ++ +EFGDEVA L+ GV +++
Sbjct: 69 IEMARVLAELHLDQA-----SLTAAVLYRAVREERVTLEAVRKEFGDEVAGLIKGVLQMA 123
Query: 191 YINQL------------------LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKA 232
I+ + +R+ V+ + +LA+R +R + P K
Sbjct: 124 AISSIHHPLKGNVLGQSEGQLDNVRKMLVTMVDDVRVALIKLAERTCAIRGVKDALPEKR 183
Query: 233 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR--NRVG 290
VA+E I+ LA RLG+ +K ELEDL F L ++K +A + + NR
Sbjct: 184 MRVAREVFEIYAPLAHRLGIGYIKWELEDLSFRYLHETAYKK----IAKLLDEKRLNRES 239
Query: 291 YSRRITTIVSS 301
Y +R+ + S
Sbjct: 240 YIKRVVAALES 250
>gi|299066585|emb|CBJ37775.1| GTP diphosphokinase [Ralstonia solanacearum CMR15]
Length = 746
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 88/129 (68%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KMR K++ +YD RA RV+V D I+ CY++L
Sbjct: 247 GIHAEVSGRPKHIYSIWRKMRGKELDFADLYDVRAFRVIVDD---------IKDCYTVLG 297
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
VH +W PI EFDDYI PK +GY+SLHT V G DG ALEVQIRT++MH +AE+G+AAH
Sbjct: 298 FVHHMWQPIPKEFDDYISRPKTNGYKSLHTVVIGDDGRALEVQIRTREMHHFAEYGVAAH 357
Query: 514 WLYKETGNK 522
W YKE G+K
Sbjct: 358 WRYKEAGSK 366
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 81/181 (44%), Gaps = 33/181 (18%)
Query: 122 TGDPYLTHCIHTGRILAML-IPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVA 180
TG+P ++H T IL L + + +A + IL A ++ +IE FGDEVA
Sbjct: 43 TGEPLVSHARGTVAILEGLRVDAPSLQAAALFLLPIL------ATDNERAIEPAFGDEVA 96
Query: 181 KLVAGVSRLSYINQLL------------------RRHRRINVNQGTLGHEE--------L 214
+LV V +L I + RR + + + L + L
Sbjct: 97 RLVHDVRQLLRIGAIAGMVSPAEAGVTRKNEAEARRAQVEALRKMLLAFAQDIRVVLIRL 156
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
A RL ++R + +A+ETL I+ LA+RLG+W LK ELEDL F +++
Sbjct: 157 ASRLQSLRWLAQNKLPAPEGMARETLDIYAPLANRLGIWQLKWELEDLGFRFEDSDTYKR 216
Query: 275 M 275
+
Sbjct: 217 I 217
>gi|83748296|ref|ZP_00945321.1| GTP pyrophosphokinase / Guanosine-3',5'-bis(Diphosphate)
3'-pyrophosphohydrolase [Ralstonia solanacearum UW551]
gi|83725028|gb|EAP72181.1| GTP pyrophosphokinase / Guanosine-3',5'-bis(Diphosphate)
3'-pyrophosphohydrolase [Ralstonia solanacearum UW551]
Length = 792
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/153 (47%), Positives = 96/153 (62%), Gaps = 17/153 (11%)
Query: 378 EEALEKELLI--------STSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARAL 429
E+ +E+E I T + G+ +S R K +YSI+ KMR K++ +YD RA
Sbjct: 269 EKRIEREKFIGEAIARLQQTLHDAGIHAEVSGRPKHIYSIWRKMRGKELDFADLYDVRAF 328
Query: 430 RVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD 489
RV+V D I+ CY++L VH +W PI EFDDYI PK +GY SLHT V G D
Sbjct: 329 RVIVDD---------IKDCYTVLGFVHHMWQPIPKEFDDYISRPKANGYMSLHTVVIGDD 379
Query: 490 GSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
G ALEVQIRT++MH +AE+G+AAHW YKE G+K
Sbjct: 380 GRALEVQIRTREMHHFAEYGVAAHWRYKEAGSK 412
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 79/180 (43%), Gaps = 31/180 (17%)
Query: 122 TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAK 181
TG+P ++H T IL L + ++ A L + A ++ +IE FG EVA+
Sbjct: 89 TGEPLVSHARGTVAILEGL-----RVDAPSLQAAALFLLPTLAADNEKAIEPAFGAEVAR 143
Query: 182 LVAGVSRLSYINQLL------------------RRHRRINVNQGTLGHEE--------LA 215
LV V +L I + RR + + + L + LA
Sbjct: 144 LVHDVRQLLRIGAIAGMVSPAETNVTRKNEAEARRAQVEALRKMLLAFAQDIRVVLIRLA 203
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
RL ++R + +A+ETL I+ LA+RLG+W LK ELEDL F ++++
Sbjct: 204 SRLQSLRWLAQNKLPAPEGMARETLDIYAPLANRLGIWQLKWELEDLGFRFEDSDTYKRI 263
>gi|120610273|ref|YP_969951.1| (p)ppGpp synthetase I SpoT/RelA [Acidovorax citrulli AAC00-1]
gi|120588737|gb|ABM32177.1| (p)ppGpp synthetase I, SpoT/RelA [Acidovorax citrulli AAC00-1]
Length = 753
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 71/140 (50%), Positives = 90/140 (64%), Gaps = 10/140 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+ T+ R K +YSI KMR K + +V+D RALRVVV P ++ CY+ L
Sbjct: 254 ISATVQGRPKHIYSIVKKMRGKSLDFDQVFDIRALRVVV---------PTVKDCYAALSW 304
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH + PID EFDDYI PKP+GYQSLHT V+ G A+E+QIRTQ MH++AEHG+AAHW
Sbjct: 305 VHSHFKPIDAEFDDYIAKPKPNGYQSLHTVVRDEAGKAIEIQIRTQAMHDHAEHGVAAHW 364
Query: 515 LYKETGNK-LQSISSMDESD 533
YKE G K +S+ E D
Sbjct: 365 AYKEAGAKGYAGVSASSEYD 384
Score = 55.8 bits (133), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 79/194 (40%), Gaps = 33/194 (17%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A AFA+ G+ +TG+ H IL + S +A +V AC
Sbjct: 39 RARAFAEPLLSGETLETGENTFAHAEAVAAILKTIGGSEAMQAASYLV---------HAC 89
Query: 166 ESLGSIEE----EFGDEVAKLVAGVSRLSYINQLLRRHRRI------------NVNQGTL 209
L EE FG A L ++L + R + NV + L
Sbjct: 90 SHLNKPEEVIAKAFGQNFATLAVETTKLMRVQHHAREAQLAGHAVDDPATHTENVRKMLL 149
Query: 210 GHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 261
LA RL +R A + ++A+E L ++ LA+RLG+W +K ELED
Sbjct: 150 AFSRDLRVVMLRLASRLQTLRFYAASKRPVSPSIAREALQVFAPLANRLGIWQMKWELED 209
Query: 262 LCFAVLQPQIFRKM 275
L F L+P ++++
Sbjct: 210 LSFRFLEPDTYKQI 223
>gi|393776779|ref|ZP_10365073.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Ralstonia sp. PBA]
gi|392716136|gb|EIZ03716.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Ralstonia sp. PBA]
Length = 735
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 89/129 (68%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ ++ R K +YSI+ KMR K++ +YD RA RV+V D ++ CY++L
Sbjct: 236 GVRAEVTGRPKHIYSIWKKMRGKELDFADLYDVRAFRVIVDD---------VKDCYTVLG 286
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH +W PI EFDDYI PK +GY+SLHT V G DG ALEVQIRT++MH +AE+G+AAH
Sbjct: 287 IVHHIWHPIPKEFDDYISRPKANGYRSLHTVVIGDDGRALEVQIRTREMHHFAEYGVAAH 346
Query: 514 WLYKETGNK 522
W YKE G+K
Sbjct: 347 WRYKEAGSK 355
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 89/195 (45%), Gaps = 28/195 (14%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V +A+ F + G TG+ L+H T R+L L A AG L V
Sbjct: 17 VVQALDFVRTRGEGHTVFTGESMLSHAEGTLRVLEGLDVGPSAEA-----AGCLFAVAAA 71
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLL---------------RRHRRINVNQGT 208
+ IE +FG+EVA+LV + +L I + R+H+ ++ +
Sbjct: 72 VPGAETEIETQFGEEVARLVRDIRQLLRIGAIATHADAVGSSKNEAEARQHQVESLRKML 131
Query: 209 LGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 260
L + LA RL +R + +A+ETL ++ LA+RLG+W +K ELE
Sbjct: 132 LAFAQDIRVVLVRLASRLATLRWLAQNKREALPGMARETLDVYAPLANRLGIWQIKWELE 191
Query: 261 DLCFAVLQPQIFRKM 275
DL F +P+I++++
Sbjct: 192 DLAFRFAEPEIYKRI 206
>gi|302803634|ref|XP_002983570.1| hypothetical protein SELMODRAFT_118606 [Selaginella moellendorffii]
gi|300148813|gb|EFJ15471.1| hypothetical protein SELMODRAFT_118606 [Selaginella moellendorffii]
Length = 540
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 116/201 (57%), Gaps = 25/201 (12%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ +F D + KA A+ AH G FR++G+ YLTHC+ T A+L+ S+G A V AG
Sbjct: 10 HKVFKDPFIIKAFRLAEEAHRGHFRRSGELYLTHCVET----AILLASAGAEAT-VVAAG 64
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE--- 212
+LHD +DD+ I FGD+VA LV GVS++S ++QL R + N+ TL
Sbjct: 65 LLHDTLDDSSIDEAQIRAIFGDDVADLVVGVSKISQLSQLARDN---NIASKTLEAGRLR 121
Query: 213 --------------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 258
+LADRLHNMRT+ AL K +A ETL I +A+RLG+W+ KAE
Sbjct: 122 TMFLAMVDVRVVLIKLADRLHNMRTLEALATEKQNRIASETLEILVPIANRLGIWSWKAE 181
Query: 259 LEDLCFAVLQPQIFRKMRADL 279
+EDLCF L P ++++ A L
Sbjct: 182 MEDLCFKYLNPTEYQELAAKL 202
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 95/155 (61%), Gaps = 18/155 (11%)
Query: 367 AGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDA 426
G+ L+++ E L+K L S I L R K+L+SI++KM++K I ++YD
Sbjct: 208 GGVVLSAI----EQLDKALRKSKIKIED----LCGRSKTLFSIYTKMKKKGRSIDEIYDV 259
Query: 427 RALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ 486
R LR++V D+ CY L+ VH+LW I G+ DYI PK +GYQSLHT V
Sbjct: 260 RGLRLIVKDEAD---------CYKALEFVHKLWDHIPGKLKDYIKQPKANGYQSLHTVVS 310
Query: 487 GPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
G DG LEVQIRT++MH +AE G+AAHW YKE GN
Sbjct: 311 GKDGLPLEVQIRTKEMHSHAEFGMAAHWRYKE-GN 344
>gi|452124129|ref|ZP_21936713.1| GTP pyrophosphokinase [Bordetella holmesii F627]
gi|452127514|ref|ZP_21940095.1| GTP pyrophosphokinase [Bordetella holmesii H558]
gi|451923359|gb|EMD73500.1| GTP pyrophosphokinase [Bordetella holmesii F627]
gi|451926794|gb|EMD76924.1| GTP pyrophosphokinase [Bordetella holmesii H558]
Length = 748
Score = 143 bits (361), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 94/140 (67%), Gaps = 9/140 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L
Sbjct: 251 GIRGEVSGRPKHIYSIWNKMRLKRLDFSQMYDLRALRIIVDD---------VRDCYAALA 301
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW+P+ EFDDYI PKP+GY+SLHT V G A EVQIRT +MH++AE+G+AAH
Sbjct: 302 LVHELWVPLQDEFDDYISRPKPNGYRSLHTVVADQQGRAFEVQIRTHEMHQFAEYGMAAH 361
Query: 514 WLYKETGNKLQSISSMDESD 533
W YKE G++ +++ + D
Sbjct: 362 WRYKEAGSRGGQVTASSDYD 381
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 17/119 (14%)
Query: 174 EFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE-----------------LAD 216
EFG EVA+LV G L + + R+ + G+ + LA
Sbjct: 103 EFGAEVARLVQGARALLRLGIVARQASDSAADTGSQKEMQRKMLLAMAADLRIVLMRLAS 162
Query: 217 RLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
RL ++R + + AQETL ++ LA+RLG+W LK ELEDL F L P ++++
Sbjct: 163 RLQSLRWHAETKTPCSASFAQETLDLYTPLANRLGIWQLKWELEDLSFRFLDPVRYKEI 221
>gi|73540969|ref|YP_295489.1| RelA/SpoT protein [Ralstonia eutropha JMP134]
gi|72118382|gb|AAZ60645.1| RelA/SpoT protein [Ralstonia eutropha JMP134]
Length = 741
Score = 143 bits (361), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 87/129 (67%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KMR K++ +YD RA RV+V D I+ CY++L
Sbjct: 239 GIRAEVSGRPKHIYSIWKKMRGKELDFADLYDVRAFRVIVDD---------IKDCYTVLG 289
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH +W PI EFDDYI PK +GY+SLHT V G DG A EVQIRT +MH +AE+G+AAH
Sbjct: 290 IVHHIWQPIPREFDDYISRPKSNGYKSLHTVVIGDDGRAFEVQIRTHEMHHFAEYGVAAH 349
Query: 514 WLYKETGNK 522
W YKE G+K
Sbjct: 350 WRYKEAGSK 358
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 92/206 (44%), Gaps = 30/206 (14%)
Query: 93 VTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
V G P + + V++A+A+ + TG+P L+H RIL L RA
Sbjct: 11 VAGVP--DADMVERALAYVREQAGDAVLPTGEPVLSHAEGMLRILDGLRVDDAARA---- 64
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH--RRINVNQGTLG 210
A L + + A IE FG++V ++V GV +L I + H + + N
Sbjct: 65 -ACCLFPLAEFAPAVEPEIEARFGEDVCRMVKGVRQLLRIGAIAGGHDAQEASRNVAQAR 123
Query: 211 HEE---------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 249
HE+ LA RL ++R + +A+ETL I+ LA+R
Sbjct: 124 HEQVEALRKMLLAFAQDIRVVLVRLASRLQSLRWLAQNKREPLPGIARETLDIYAPLANR 183
Query: 250 LGLWALKAELEDLCFAVLQPQIFRKM 275
LG+W +K ELEDL F QP ++++
Sbjct: 184 LGIWQMKWELEDLAFRFEQPDTYKRI 209
>gi|374370980|ref|ZP_09628969.1| RelA/SpoT protein [Cupriavidus basilensis OR16]
gi|373097537|gb|EHP38669.1| RelA/SpoT protein [Cupriavidus basilensis OR16]
Length = 717
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 68/124 (54%), Positives = 86/124 (69%), Gaps = 9/124 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+S R K +YSI+ KMR K++ +YD RA RV+V D I+ CY++L IVH +
Sbjct: 222 VSGRPKHIYSIWKKMRGKELDFADLYDVRAFRVIVDD---------IKDCYTVLGIVHHI 272
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI EFDDYI PK +GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW YKE
Sbjct: 273 WQPIPREFDDYISRPKSNGYKSLHTVVIGDDGRAFEVQIRTQEMHHFAEYGVAAHWRYKE 332
Query: 519 TGNK 522
G+K
Sbjct: 333 AGSK 336
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 74/175 (42%), Gaps = 10/175 (5%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V++A+AF + TG+ L+H RIL G R D A +
Sbjct: 20 VERALAFVRERGSAALLPTGETVLSHAEGMLRIL------DGLRVDDAARAAACLFALAA 73
Query: 164 ACE-SLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI--NVNQGTLGHEELADRLHN 220
S IE FG+EVA LV GV +L I + H +E + L
Sbjct: 74 FVPGSEVEIEPLFGEEVAGLVKGVRQLLRIGAIAVGHSGAPETTKDEIAARQEQVEALRK 133
Query: 221 MRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
M +A + V + L LA+RLG+W +K ELEDL F QP+ ++++
Sbjct: 134 MLLAFA-QDIRVVLVRLASRLQTLRLANRLGIWQMKWELEDLAFRFEQPETYKRI 187
>gi|260219530|emb|CBA26375.1| GTP pyrophosphokinase [Curvibacter putative symbiont of Hydra
magnipapillata]
Length = 745
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 84/129 (65%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ T+ R K +YSI KMR K +G +VYD RALR+VV P + CY+ L
Sbjct: 254 GVHATVQGRPKHIYSIVKKMRGKSLGFDQVYDIRALRIVV---------PTVPDCYAALS 304
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH + PI EFDDYI PKP+GYQSLHT V+ +EVQIRTQ MH++AEHG+AAH
Sbjct: 305 LVHTRFTPITEEFDDYIARPKPNGYQSLHTVVRDAGSQPIEVQIRTQAMHDHAEHGVAAH 364
Query: 514 WLYKETGNK 522
W YKE G K
Sbjct: 365 WAYKEAGAK 373
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 82/203 (40%), Gaps = 40/203 (19%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+Q+A AFA+ + TG+ L H IL + S +A +V
Sbjct: 31 LQRARAFAEPLLATESLDTGENVLQHADAVAAILHTIGGSEAMQAASYLVY--------- 81
Query: 164 ACESLGS----IEEEFGDEVAKLVAGVSRLSYINQLLR-------------------RHR 200
AC+ L I + FGD A L ++L + ++ R +
Sbjct: 82 ACDHLNKPHEIIAKAFGDNFADLALETTKLVRLQRMARLAQQSASHSSSAAPMAQTAAAQ 141
Query: 201 RINVNQGTLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+V + L + LA RL +R A +A E L ++ LA+RLG+
Sbjct: 142 TESVRKMLLAFSKDLRVVMLRLASRLQTLRHFAATKLPVPPGLASEALQVFAPLANRLGI 201
Query: 253 WALKAELEDLCFAVLQPQIFRKM 275
W +K E+EDL F L+P ++++
Sbjct: 202 WEIKWEMEDLSFRFLEPDTYKQV 224
>gi|300703877|ref|YP_003745479.1| GTP diphosphokinase [Ralstonia solanacearum CFBP2957]
gi|299071540|emb|CBJ42864.1| GTP diphosphokinase [Ralstonia solanacearum CFBP2957]
Length = 746
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 87/129 (67%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KMR K++ +YD RA RV+V D I+ CY++L
Sbjct: 247 GIHAEVSGRPKHIYSIWRKMRGKELDFADLYDVRAFRVIVDD---------IKDCYTVLG 297
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
VH +W PI EFDDYI PK +GY SLHT V G DG ALEVQIRT++MH +AE+G+AAH
Sbjct: 298 FVHHMWQPIPKEFDDYISRPKANGYMSLHTVVIGDDGRALEVQIRTREMHHFAEYGVAAH 357
Query: 514 WLYKETGNK 522
W YKE G+K
Sbjct: 358 WRYKEAGSK 366
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 82/188 (43%), Gaps = 32/188 (17%)
Query: 115 HHGQFRK-TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEE 173
H G R TG+P ++H T IL L + ++ A L + A ++ +IE
Sbjct: 35 HAGDHRTLTGEPLVSHARGTVAILDGL-----RVDAPSLQAAALFLLPTLAADNEKAIEP 89
Query: 174 EFGDEVAKLVAGVSRLSYINQLL------------------RRHRRINVNQGTLGHEE-- 213
FG EVA+LV V +L I + RR + + + L +
Sbjct: 90 AFGAEVARLVHDVRQLLRIGAIAGMVNPAETNVTRKNEAEARRAQVEALRKMLLAFAQDI 149
Query: 214 ------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL 267
LA RL ++R + +A+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 150 RVVLIRLASRLQSLRWLAQNKLPAPEGMARETLDIYAPLANRLGIWQLKWELEDLGFRFE 209
Query: 268 QPQIFRKM 275
++++
Sbjct: 210 DSDTYKRI 217
>gi|395762127|ref|ZP_10442796.1| GTP pyrophosphokinase [Janthinobacterium lividum PAMC 25724]
Length = 750
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 88/138 (63%), Gaps = 9/138 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+E + R K +YSI++KMR K++ +YD RA RV+V D ++ CY++L
Sbjct: 250 GIEAEVFGRPKHIYSIWNKMRGKELDFTALYDVRAFRVIVAD---------VKTCYTVLG 300
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH +W PI EFDDYI PK +GYQSLHT V DG LEVQIRT +MH +AE+G+AAH
Sbjct: 301 VVHNVWTPIPKEFDDYISRPKANGYQSLHTVVTAEDGRPLEVQIRTNEMHSFAEYGVAAH 360
Query: 514 WLYKETGNKLQSISSMDE 531
W YKE G + DE
Sbjct: 361 WRYKEEGGSNFAGQKYDE 378
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 87/210 (41%), Gaps = 32/210 (15%)
Query: 93 VTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
V G + +V A+A+A A+ + G L I LA L + +T
Sbjct: 16 VEGLSAPDSARVLDALAYATEAYGDKQTFAGCSALEFAIGVATTLAFL-----RSDAETR 70
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE 212
+AG++ ++ ++ IE FG +V L GV +L + L + +G +
Sbjct: 71 IAGLMFELTMLDPDTAADIEPRFGKQVCDLATGVRQLIRLRALTQAQHGSAAGRGKNAAQ 130
Query: 213 ELADRLHNMRTIYALPPAKARAV---------------------------AQETLLIWCS 245
+ ++ +R + + R V +ETL ++
Sbjct: 131 QAVAQVETLRKMLLAMASDMRVVLVRLAACVTTLRYFAEIKLFNDMTREYGKETLDLYAP 190
Query: 246 LASRLGLWALKAELEDLCFAVLQPQIFRKM 275
LA+RLG+W LK ELEDL F ++P+ ++++
Sbjct: 191 LANRLGIWQLKWELEDLSFRFIEPEAYKRI 220
>gi|332298737|ref|YP_004440659.1| (p)ppGpp synthetase I SpoT/RelA [Treponema brennaborense DSM 12168]
gi|332181840|gb|AEE17528.1| (p)ppGpp synthetase I, SpoT/RelA [Treponema brennaborense DSM
12168]
Length = 615
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 115/421 (27%), Positives = 194/421 (46%), Gaps = 97/421 (23%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E+++ A + G R G PY H + ILA + DT+VAG LH+V+
Sbjct: 35 ERIRTAWEYLCGTTAGLLRACGKPYYQHPMRVACILA-----ESRLDADTIVAGFLHNVL 89
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNM 221
+E FG V ++++G ++++ + + + TL H+ AD + M
Sbjct: 90 SLETVDPADVESRFGSAVFRIISGTAKIT----------NLKIQKKTL-HQ--ADSIRKM 136
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLAS 281
++A+ + +I LA RL + +L + ++P + + + ++
Sbjct: 137 --LFAM--------IDDIRVILVKLADRLD------RMRNL--SSVEPDVQKLIAQEVID 178
Query: 282 MWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSD 340
+W+P NR+G S ++ +D S + V + L+++V
Sbjct: 179 IWAPLANRLGMS------------SVKSELEDLSLKFTNPDVYAQ---LKSIVALK---- 219
Query: 341 RRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLS 400
+ +R+ +L E +KE+ + S G+E+ +S
Sbjct: 220 KNERSDYL------------------------------EKAQKEIYRAASR-AGIEIAVS 248
Query: 401 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 460
SR K YSI+ KMR+++ +++D ALRV+ CY+L+ +VH LW
Sbjct: 249 SRAKHFYSIYQKMRKRNKAADELFDLLALRVICNTSAE---------CYTLVGLVHNLWK 299
Query: 461 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 520
P+DG F DYI PK +GYQSLHT V +G LE+QIRT+ MH AE+G+A+HWLYK+
Sbjct: 300 PLDGRFKDYIAMPKANGYQSLHTTVLC-EGMPLEIQIRTKDMHSVAEYGVASHWLYKKGT 358
Query: 521 N 521
N
Sbjct: 359 N 359
>gi|24059853|dbj|BAC21321.1| putative RSH, disease resistance-related protein [Oryza sativa
Japonica Group]
Length = 589
Score = 143 bits (360), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 83/203 (40%), Positives = 121/203 (59%), Gaps = 19/203 (9%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF DE V++A A+ AH GQ R +GDPYL HC+ T +LA L V AG
Sbjct: 102 HAIFRDELVRRAFYAAEAAHRGQMRASGDPYLQHCVETAALLAELGAGPA-----VVAAG 156
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH---RRIN----VNQGT 208
+LHD VDDA GS+ +FG VA LV GVS LS++++L RR+ R++ +
Sbjct: 157 LLHDTVDDAGLGYGSLSVQFGAGVADLVKGVSNLSHLSKLARRNDTASRVDEADKLRTVF 216
Query: 209 LGHEE-------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 261
L E+ LADRLHNMRT+ +LP K + A+ETL I+ LA++LG+ K +LE+
Sbjct: 217 LAMEDARAVLIKLADRLHNMRTLDSLPKVKQQCFAKETLEIFAPLANQLGILNWKEQLEN 276
Query: 262 LCFAVLQPQIFRKMRADLASMWS 284
LCF L P+++ ++ ++L ++
Sbjct: 277 LCFKYLYPELYEELSSNLLEFYN 299
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 85/135 (62%), Gaps = 12/135 (8%)
Query: 398 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 457
T+S R KS+YSI+SKM +K + + ++YD +RV++ +K C++ L+IVH
Sbjct: 323 TISGRNKSMYSIYSKMAKK-LDMDEIYDIHGVRVILDNKAD---------CFTTLEIVHH 372
Query: 458 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 517
LW I G+F DYI +PKP+ YQSLHT V + LE+QIRT+ MH AE G+AAHW YK
Sbjct: 373 LWPRIPGKFKDYINSPKPN-YQSLHTVVLSEETLPLEIQIRTRDMHLQAEFGIAAHWRYK 431
Query: 518 E-TGNKLQSISSMDE 531
E N S+ M E
Sbjct: 432 EAVRNCCSSVPEMVE 446
>gi|113867356|ref|YP_725845.1| GTP pyrophosphokinase [Ralstonia eutropha H16]
gi|113526132|emb|CAJ92477.1| GTP pyrophosphokinase [Ralstonia eutropha H16]
Length = 742
Score = 143 bits (360), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 70/139 (50%), Positives = 90/139 (64%), Gaps = 9/139 (6%)
Query: 384 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 443
E L S G+ +S R K +YSI+ KMR K++ +YD RA RV+V D
Sbjct: 232 ERLQSELATAGIRAEVSGRPKHIYSIWKKMRGKELDFADLYDVRAFRVIVDD-------- 283
Query: 444 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 503
I+ CY++L IVH +W PI EFDDYI PK +GY+SLHT V G DG A EVQIRT +MH
Sbjct: 284 -IKDCYTVLGIVHHIWQPIPREFDDYISRPKANGYKSLHTVVIGDDGRAFEVQIRTHEMH 342
Query: 504 EYAEHGLAAHWLYKETGNK 522
+AE+G+AAHW YKE G++
Sbjct: 343 HFAEYGVAAHWRYKEAGSR 361
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 97/218 (44%), Gaps = 35/218 (16%)
Query: 87 IVDGVDVTGY--PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSS 144
+V D+TG I + E V++A+A+ + TG+ L+H RIL
Sbjct: 1 MVTSTDLTGRVAGIPDAELVERALAYVREHGAEVALPTGETVLSHAQGMLRIL------D 54
Query: 145 GKRAVDTVVAGI-LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYI----------- 192
G R D A L +V + I FGDEVA+LV GV +L I
Sbjct: 55 GLRVDDAARAAACLFGLVAFVPGTEAEIAPRFGDEVARLVDGVRQLLRIGAIAGSRPEAE 114
Query: 193 ------NQLLRRHRRIN-VNQGTLGHEE--------LADRLHNMRTIYALPPAKARAVAQ 237
N+ RH ++ + + L + LA RL +R + A VA+
Sbjct: 115 PAAPSKNEAQARHEQVEALRKMLLAFAQDIRVVLVRLASRLQTLRWLAETKQAPQPGVAR 174
Query: 238 ETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
ETL I+ LA+RLG+W +K ELEDL F QP ++++
Sbjct: 175 ETLDIYAPLANRLGIWQMKWELEDLAFRFEQPDTYKRI 212
>gi|326316451|ref|YP_004234123.1| (p)ppGpp synthetase I SpoT/RelA [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323373287|gb|ADX45556.1| (p)ppGpp synthetase I, SpoT/RelA [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 741
Score = 143 bits (360), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+ T+ R K +YSI KMR K + +V+D RALRVVV P ++ CY+ L
Sbjct: 242 ISATVQGRPKHIYSIVKKMRGKSLDFDQVFDIRALRVVV---------PTVKDCYAALSW 292
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH + PID EFDDYI PKP+GYQSLHT V+ G A+E+QIRTQ MH++AEHG+AAHW
Sbjct: 293 VHSHFKPIDAEFDDYIAKPKPNGYQSLHTVVRDEAGKAIEIQIRTQAMHDHAEHGVAAHW 352
Query: 515 LYKETGNK 522
YKE G K
Sbjct: 353 AYKEAGAK 360
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 79/194 (40%), Gaps = 33/194 (17%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A AFA+ + +TG+ H IL + S +A +V AC
Sbjct: 27 RARAFAEPLLSAETLETGENTFAHAEAVAAILKAIGGSEAMQAASYLV---------HAC 77
Query: 166 ESLGSIEE----EFGDEVAKLVAGVSRLSYINQLLRRHRRI------------NVNQGTL 209
L EE FG A L ++L + R + NV + L
Sbjct: 78 SHLNKPEEVIAKAFGQNFATLAVETTKLMRVQHHAREAQLAGHAVDDPATHTENVRKMLL 137
Query: 210 GHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 261
LA RL +R A + ++A+E L ++ SLA+RLG+W +K ELED
Sbjct: 138 AFSRDLRVVMLRLASRLQTLRFYAASKRPVSPSIAREALQVFASLANRLGIWQMKWELED 197
Query: 262 LCFAVLQPQIFRKM 275
L F L+P ++++
Sbjct: 198 LSFRFLEPDTYKQI 211
>gi|194289382|ref|YP_002005289.1| (p)ppgpp synthetase i (gtp pyrophosphokinase) [Cupriavidus
taiwanensis LMG 19424]
gi|193223217|emb|CAQ69222.1| (p)ppGpp synthetase I (GTP pyrophosphokinase) [Cupriavidus
taiwanensis LMG 19424]
Length = 742
Score = 142 bits (359), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 87/129 (67%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KMR K++ +YD RA RV+V D I+ CY++L
Sbjct: 242 GIRAEVSGRPKHIYSIWKKMRGKELDFADLYDVRAFRVIVDD---------IKDCYTVLG 292
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH +W PI EFDDYI PK +GY+SLHT V G DG A EVQIRT +MH +AE+G+AAH
Sbjct: 293 IVHHIWQPIPREFDDYISRPKANGYKSLHTVVIGDDGRAFEVQIRTHEMHHFAEYGVAAH 352
Query: 514 WLYKETGNK 522
W YKE G++
Sbjct: 353 WRYKEAGSR 361
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 94/209 (44%), Gaps = 33/209 (15%)
Query: 93 VTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
V G P + E V++A+A+ + G TG+ +H RIL L RA
Sbjct: 11 VAGIP--DTELVERALAYVREHGAGVALPTGETVPSHAEGMLRILDGLRVDDSARA---- 64
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYI-----------------NQL 195
A L + E+ IE FG+EVA+LV GV +L I N+
Sbjct: 65 -AACLFGLAAFVPETEAEIEPRFGEEVARLVNGVRQLLRIGAIAGNRPDAESAAPSKNEA 123
Query: 196 LRRHRRIN-VNQGTLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSL 246
RH ++ + + L + LA RL +R + + VA+ETL I+ L
Sbjct: 124 QARHEQVEALRKMLLAFAQDIRVVLVRLASRLQTLRWLAETKQSPLPGVARETLDIYAPL 183
Query: 247 ASRLGLWALKAELEDLCFAVLQPQIFRKM 275
A+RLG+W +K ELEDL F QP ++++
Sbjct: 184 ANRLGIWQMKWELEDLAFRFEQPDTYKRI 212
>gi|121595454|ref|YP_987350.1| (p)ppGpp synthetase I SpoT/RelA [Acidovorax sp. JS42]
gi|120607534|gb|ABM43274.1| (p)ppGpp synthetase I, SpoT/RelA [Acidovorax sp. JS42]
Length = 747
Score = 142 bits (359), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 91/140 (65%), Gaps = 10/140 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+ ++ R K +YSI KMR K + +V+D RALRVVV P+++ CY+ L
Sbjct: 259 ISASVQGRPKHIYSIVKKMRGKSLNFDQVFDIRALRVVV---------PSVKDCYAALSW 309
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH + PI+ EFDDYI PKP+GYQSLHT V+ G A+E+QIRTQ MH++AEHG+AAHW
Sbjct: 310 VHSQFKPIEAEFDDYIARPKPNGYQSLHTVVRDEAGKAIEIQIRTQAMHDHAEHGVAAHW 369
Query: 515 LYKETGNK-LQSISSMDESD 533
YKE G K +S+ E D
Sbjct: 370 AYKEAGTKGYAGVSASSEYD 389
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 84/195 (43%), Gaps = 35/195 (17%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A AFA+ G+ +TG+ L H IL L S +A +V AC
Sbjct: 44 RARAFAEPLLIGETLETGENTLVHADAVSAILKHLGGSETMQAAAYLVY---------AC 94
Query: 166 ESLGSIEE----EFGDEVAKLVAGVSRLSYINQLLRRHRRI-------------NVNQGT 208
L EE FG A L ++L + QL R ++ NV +
Sbjct: 95 SHLNKPEEVITKAFGSNFAALALETTKLMRV-QLQAREAQVMGQQVDDAATQTENVRKML 153
Query: 209 LGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 260
L LA RL +R A + A+A+E L ++ LA+RLG+W +K ELE
Sbjct: 154 LAFSRDLRVVMLRLASRLQTLRFYAAAKRPVSPAIAREALQVFAPLANRLGIWQMKWELE 213
Query: 261 DLCFAVLQPQIFRKM 275
DL F L+P+ ++++
Sbjct: 214 DLAFRFLEPETYKEV 228
>gi|222111668|ref|YP_002553932.1| (p)ppGpp synthetase I SpoT/RelA [Acidovorax ebreus TPSY]
gi|221731112|gb|ACM33932.1| (p)ppGpp synthetase I, SpoT/RelA [Acidovorax ebreus TPSY]
Length = 747
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 91/140 (65%), Gaps = 10/140 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+ ++ R K +YSI KMR K + +V+D RALRVVV P+++ CY+ L
Sbjct: 259 ISASVQGRPKHIYSIVKKMRGKSLNFDQVFDIRALRVVV---------PSVKDCYAALSW 309
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH + PI+ EFDDYI PKP+GYQSLHT V+ G A+E+QIRTQ MH++AEHG+AAHW
Sbjct: 310 VHSQFKPIEAEFDDYIARPKPNGYQSLHTVVRDEAGKAIEIQIRTQAMHDHAEHGVAAHW 369
Query: 515 LYKETGNK-LQSISSMDESD 533
YKE G K +S+ E D
Sbjct: 370 AYKEAGTKGYAGVSASSEYD 389
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 84/195 (43%), Gaps = 35/195 (17%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A AFA+ G+ +TG+ L H IL L S +A +V AC
Sbjct: 44 RARAFAEPLLIGETLETGENTLVHADAVSAILKHLGGSETMQAAVYLVY---------AC 94
Query: 166 ESLGSIEE----EFGDEVAKLVAGVSRLSYINQLLRRHRRI-------------NVNQGT 208
L EE FG A L ++L + QL R ++ NV +
Sbjct: 95 SHLNKPEEVITKAFGSNFAALALETTKLMRV-QLQAREAQVTGQQVDDAATQTENVRKML 153
Query: 209 LGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 260
L LA RL +R A + A+A+E L ++ LA+RLG+W +K ELE
Sbjct: 154 LAFSRDLRVVMLRLASRLQTLRFYAAAKRPVSPAIAREALQVFAPLANRLGIWQMKWELE 213
Query: 261 DLCFAVLQPQIFRKM 275
DL F L+P+ ++++
Sbjct: 214 DLAFRFLEPETYKEV 228
>gi|340786805|ref|YP_004752270.1| GTP pyrophosphokinase [Collimonas fungivorans Ter331]
gi|340552072|gb|AEK61447.1| GTP pyrophosphokinase [Collimonas fungivorans Ter331]
Length = 757
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 90/137 (65%), Gaps = 9/137 (6%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
++ +S R K +YSI++KM+ K++ ++YD RA RV+V D ++ CY++L I
Sbjct: 251 IKAEVSGRPKHIYSIWNKMQGKELDFSELYDVRAFRVIVDD---------VKTCYTVLGI 301
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH +W+PI EFDDYI PK +GYQSLHT V D ALEVQIRT +MH +AE+G+AAHW
Sbjct: 302 VHNIWVPIPKEFDDYISRPKQNGYQSLHTVVLADDDRALEVQIRTNEMHHFAEYGVAAHW 361
Query: 515 LYKETGNKLQSISSMDE 531
YKE G S DE
Sbjct: 362 RYKEAGGSNFSAQKYDE 378
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 86/205 (41%), Gaps = 43/205 (20%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
+V A+AF + + TG L ILA+L V+T +AG+L ++
Sbjct: 27 RVLDALAFVEPLYADNVITTGQSTLDFSQGVTSILALLDTD-----VETRIAGLLFELPL 81
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH-----------RRINVNQGTLGH 211
+IE+ FG E++ LV G I QL+R H R N Q
Sbjct: 82 LDASYADTIEQRFGKEISDLVGG------IRQLMRLHGFTFGLPQEVMRGKNAAQQAASQ 135
Query: 212 EE-------------------LADRLHNMRTI--YALPPAKARAVAQETLLIWCSLASRL 250
E LA R+ +R + + + A+ETL ++ LA+RL
Sbjct: 136 VETLRKMLLAMATDMRVVLVRLASRVTALRYFSEHKIENERTSQYARETLDLYAPLANRL 195
Query: 251 GLWALKAELEDLCFAVLQPQIFRKM 275
G+W LK ELEDL F + P ++++
Sbjct: 196 GIWQLKWELEDLSFRFIDPVTYKRI 220
>gi|152995282|ref|YP_001340117.1| (p)ppGpp synthetase I SpoT/RelA [Marinomonas sp. MWYL1]
gi|150836206|gb|ABR70182.1| (p)ppGpp synthetase I, SpoT/RelA [Marinomonas sp. MWYL1]
Length = 749
Score = 142 bits (358), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 73/137 (53%), Positives = 90/137 (65%), Gaps = 11/137 (8%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
L R K +YSI+ KM+RK++G +VYD RA+R++V + CY +L +VH L
Sbjct: 261 LMGRAKHIYSIWRKMKRKNIGFDEVYDVRAVRILVDEP---------MECYGVLGVVHNL 311
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI EFDDYI NPK +GYQSLHTAV GP G ALE+QIRT KMHE AE G+ AHW YK
Sbjct: 312 WRPIPQEFDDYISNPKSNGYQSLHTAVIGPQGRALEIQIRTHKMHEDAELGVCAHWKYK- 370
Query: 519 TGNKLQSISSMDESDIE 535
G L S SS E ++
Sbjct: 371 -GTDLSSNSSSYEEKLQ 386
Score = 48.1 bits (113), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 27/191 (14%)
Query: 137 LAMLIPSSGKRA-VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL 195
L M+ SG RA D++VA L+ VV + + + E FG +V+ +V GV ++ +++
Sbjct: 68 LEMVEILSGFRADQDSLVAAALYRVVREDQLPISRVTEMFGRKVSSIVEGVMKMGEVSKN 127
Query: 196 LRRHRRINV-----NQGTLGHEELADRLHNMRTIY--------ALPPAKAR------AVA 236
L V NQ + L + ++R + A+ AK + AVA
Sbjct: 128 LTADSAAEVLGSSENQLESLRKMLVSIIDDVRVVLIKLAERACAIKEAKYQNEERRVAVA 187
Query: 237 QETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRIT 296
E ++ LA RLG+ +K ELEDL F L P ++++ + W R+ + I
Sbjct: 188 LEVQSVYAPLAHRLGIGHIKWELEDLSFRYLYPNDYKRI-----ATWLDEKRLDRQQYID 242
Query: 297 TIVSSPPLDER 307
++ LD+R
Sbjct: 243 DVIK--LLDDR 251
>gi|372268561|ref|ZP_09504609.1| GTP pyrophosphokinase [Alteromonas sp. S89]
Length = 723
Score = 142 bits (358), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 77/158 (48%), Positives = 98/158 (62%), Gaps = 15/158 (9%)
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI+ KMRRK++G +VYD RA+R++V P ++ CY++L IVH LW
Sbjct: 240 RAKHIYSIWRKMRRKNIGFSQVYDIRAVRILV---------PTVRDCYAVLGIVHNLWRN 290
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
I EFDDYI +PK +GY+SLHTAV GPD LEVQIRT MHE AE+G+ AHW YK T
Sbjct: 291 IPNEFDDYIASPKENGYRSLHTAVIGPDRKVLEVQIRTFAMHEEAEYGVCAHWRYKGTDK 350
Query: 522 KLQSISSMDESDIEASSSLSKDTDDH-----NPLDTDL 554
K + D + + S L + D H NPL DL
Sbjct: 351 KSGQLEGQDGYE-QKISWLRQVLDWHEEVGGNPLQDDL 387
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 19/145 (13%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYI----------------- 192
+ + A +L+ V + L ++E E G+ VAKL+ GV R++ I
Sbjct: 58 EALCAAMLYRAVREKRLPLKTVEAEMGETVAKLIRGVLRMAVIRSRSADTGEENQSGAVE 117
Query: 193 --NQLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 250
++ +RR V+ + +LA+R +R AK R VA+E ++ LA RL
Sbjct: 118 EHSENIRRMLVALVDDVRVALIKLAERTCAIRAAKNTDEAKRRRVAREVADVYAPLAHRL 177
Query: 251 GLWALKAELEDLCFAVLQPQIFRKM 275
G+ +K ELEDL F L+P + ++
Sbjct: 178 GIGHIKWELEDLAFRYLEPDDYMQI 202
>gi|282857439|ref|ZP_06266672.1| GTP diphosphokinase [Pyramidobacter piscolens W5455]
gi|282584724|gb|EFB90059.1| GTP diphosphokinase [Pyramidobacter piscolens W5455]
Length = 816
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 99/169 (58%), Gaps = 16/169 (9%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+E + R K YSIF KM RK + + ++YD ALRV+V D + CY++L
Sbjct: 325 GIEAHIKGRAKHFYSIFEKMNRKKLSVEQLYDLLALRVIVND---------VTTCYTVLG 375
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW PI G+FDDYI NPK + Y+SLHT V GP G LEVQIRT +MH AE+G+AAH
Sbjct: 376 IVHTLWKPIPGQFDDYIANPKNNMYRSLHTTVMGPQGEPLEVQIRTWEMHWLAEYGVAAH 435
Query: 514 WLYK-------ETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLF 555
W YK E KL+ I E+ E +S + + L +D+F
Sbjct: 436 WRYKEGQGHIDELDQKLEWIRKTLENGPETNSQEFMERLRDDVLTSDVF 484
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 102/184 (55%), Gaps = 14/184 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
+Q+ +A+ FA +AH Q R +G+PY+ H ++ ILA + + + T+ AG+LHDV+
Sbjct: 118 KQLGEALVFAAQAHGDQMRASGEPYVIHPVYVTSILADM-----RMDLPTLQAGLLHDVL 172
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLS---------YINQLLRRHRRINVNQGTLGHE 212
+D + ++ FG V LV GV++L Y + LR+ + +
Sbjct: 173 EDTPVTADEMKNRFGATVEMLVDGVTKLGKLPFKTFEDYQAENLRKMFLVMAKDIRVVLI 232
Query: 213 ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 272
+LADR HNMR++ AL K + +A+ETL I+ LA RLG++ +K LEDL F P ++
Sbjct: 233 KLADRTHNMRSLGALRRDKQQRIAKETLEIYAPLAHRLGIYQVKRTLEDLAFKYYDPTMY 292
Query: 273 RKMR 276
++
Sbjct: 293 YDIK 296
>gi|320161070|ref|YP_004174294.1| GTP pyrophosphokinase [Anaerolinea thermophila UNI-1]
gi|319994923|dbj|BAJ63694.1| GTP pyrophosphokinase [Anaerolinea thermophila UNI-1]
Length = 733
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 99/281 (35%), Positives = 146/281 (51%), Gaps = 45/281 (16%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILA-MLIPSSGKRAVDTVVA 154
Y + E + KA A++AH GQ R +G+PY+THC ILA + +P + V+A
Sbjct: 14 YSAADREMICKAYQLAEKAHEGQKRLSGEPYITHCEAVAAILADIRVPPT------LVIA 67
Query: 155 GILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH--------------- 199
G+LHD V+D +L I EFGDE+AKLV GV++L+++ ++ R
Sbjct: 68 GLLHDTVEDTPITLEDIRREFGDEIAKLVDGVTKLTHLPRVSRDDQYASEVEEYGLALET 127
Query: 200 ----RRINVNQGTL-------GHE------ELADRLHNMRTIYALPPAKARAVAQETLLI 242
RR + Q TL G + +LADRLHNMRT+ +P K R +AQETL I
Sbjct: 128 TEDTRRKQLAQETLRKTFLAMGEDIRVVLIKLADRLHNMRTLGYMPENKRRRIAQETLDI 187
Query: 243 WCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSP 302
+ LA+RLG+W +K ELEDL F + P+ ++++ LA + R ++I I+S
Sbjct: 188 FAPLANRLGIWQIKWELEDLAFRYVNPEKYKEIAELLA-----QKRADREKQIQEIISRL 242
Query: 303 PLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 342
A T +H+ S+ K ++E FD L D R
Sbjct: 243 RTILEQAGIQAEITGRPKHIYSIYKKMVEKSRSFDSLMDLR 283
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/132 (46%), Positives = 79/132 (59%), Gaps = 9/132 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ ++ R K +YSI+ KM K + D R +R++V P Q CY+ L
Sbjct: 250 GIQAEITGRPKHIYSIYKKMVEKSRSFDSLMDLRGVRLIV---------PTTQDCYAALG 300
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
I+H W PI EFDDYI PK + YQSLHTAV DG LEVQIRT +M + AE+G+AAH
Sbjct: 301 IIHTHWRPIPHEFDDYIAAPKDNNYQSLHTAVIYDDGKPLEVQIRTPEMDQNAEYGIAAH 360
Query: 514 WLYKETGNKLQS 525
W YKE KL+
Sbjct: 361 WRYKEKHGKLEE 372
Score = 42.7 bits (99), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 28/161 (17%)
Query: 672 HLTEEEESEYWAVVSAVF--EGKPVDSVVSRRSSDSVAPT-------------SMEASIN 716
++ +++ Y ++ +AV +GKP++ + D A +E
Sbjct: 316 YIAAPKDNNYQSLHTAVIYDDGKPLEVQIRTPEMDQNAEYGIAAHWRYKEKHGKLEEDYE 375
Query: 717 NKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGS 776
+V LLR ++ W +++ A G + + D V V P G+I+ L GS
Sbjct: 376 QRVNLLRRLMDWRQEVTDAAEFMD---GVRTDVFKDRVY------VFTPKGDIIDLPQGS 426
Query: 777 TAADAA----MKVGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
T D A ++G + VNG+LV + ELK GD VE+
Sbjct: 427 TPIDFAYHVHTEIGHRCRGAKVNGKLVTLDYELKTGDQVEI 467
>gi|217970681|ref|YP_002355915.1| (p)ppGpp synthetase I SpoT/RelA [Thauera sp. MZ1T]
gi|217508008|gb|ACK55019.1| (p)ppGpp synthetase I, SpoT/RelA [Thauera sp. MZ1T]
Length = 734
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/125 (54%), Positives = 88/125 (70%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+E ++ R K +YSI++KMR+K + +V+D RALRV+V P I+ CY++L
Sbjct: 246 GIEAEITGRAKHIYSIYNKMRKKRLDFSQVFDIRALRVLV---------PEIKDCYTVLG 296
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH++W PI EFDDYI PK + YQSLHTAV DG ALEVQIRT MH++AE G+AAH
Sbjct: 297 IVHQMWQPIAKEFDDYITKPKGNNYQSLHTAVLAGDGRALEVQIRTFDMHKHAELGVAAH 356
Query: 514 WLYKE 518
W YKE
Sbjct: 357 WRYKE 361
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 89/192 (46%), Gaps = 23/192 (11%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++ A+ + + G+ TG+P TH I A LI +S + +T VA +L
Sbjct: 30 EHIEAALEWIADLYEGKVLGTGEPTWTHAIG-----AALIAASLRLDAETRVAALLFAAW 84
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLR----------RHRRINVNQGTLGH 211
++ IE FG + LV G+ +L+ + L R R + + + L
Sbjct: 85 EELEAPAEEIEARFGPAITALVRGLHKLNGLRVLTRLTTSASAPEIRAQTEVLRKMLLAM 144
Query: 212 EE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLC 263
E LA R +R LP VA+E+L I+ LA+RLG+W +K ELEDL
Sbjct: 145 VEDIRVVLVRLASRTQTLRFYTDLPGEARVEVARESLDIYAPLANRLGVWQIKWELEDLS 204
Query: 264 FAVLQPQIFRKM 275
F ++P ++++
Sbjct: 205 FRFIEPDTYKRI 216
>gi|329907906|ref|ZP_08274732.1| GTP pyrophosphokinase [Oxalobacteraceae bacterium IMCC9480]
gi|327546888|gb|EGF31806.1| GTP pyrophosphokinase [Oxalobacteraceae bacterium IMCC9480]
Length = 757
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 89/138 (64%), Gaps = 9/138 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+E + R K +YSI++KMR K + ++D RA RV+V D ++ CY++L
Sbjct: 248 GIEAEVFGRPKHIYSIWNKMRGKAIDFSSLHDVRAFRVIVDD---------VKTCYAVLG 298
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH W P+ EFDDYI PKP+GYQSLHT V DG LE+QIRT++MH +AE+G+AAH
Sbjct: 299 IVHDNWAPVPEEFDDYIARPKPNGYQSLHTIVMAEDGRPLEIQIRTKEMHYFAEYGVAAH 358
Query: 514 WLYKETGNKLQSISSMDE 531
W YKE+G + DE
Sbjct: 359 WRYKESGGSNFAAQKYDE 376
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 38/202 (18%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD--V 160
+V + +AF + + G+ TG + LA L + DT +A +L + V
Sbjct: 26 RVAEVLAFVEPVYTGRTVVTGQDACDFSLGVAMTLAAL-----QTDADTRIAALLFELPV 80
Query: 161 VDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHN 220
+D G IE FG EVA V V ++ +++L + V +G ++ A +L
Sbjct: 81 LDPLLA--GQIETRFGKEVAVFVEDVRQMMRLHELTFGQQ--EVGRGKNAAQQAAAQLET 136
Query: 221 MRTIYALPPAKARAV---------------------------AQETLLIWCSLASRLGLW 253
+R + + R V A+ETL ++ LA+RLG+W
Sbjct: 137 LRKMLLAMASDMRVVLVRLASRTTTLRYFAERRIDTEQTYRYARETLDLYAPLANRLGVW 196
Query: 254 ALKAELEDLCFAVLQPQIFRKM 275
LK E+EDL F L+P ++++
Sbjct: 197 QLKWEMEDLSFRFLEPAAYKQI 218
>gi|394988989|ref|ZP_10381824.1| hypothetical protein SCD_01404 [Sulfuricella denitrificans skB26]
gi|393792368|dbj|GAB71463.1| hypothetical protein SCD_01404 [Sulfuricella denitrificans skB26]
Length = 728
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/140 (50%), Positives = 92/140 (65%), Gaps = 9/140 (6%)
Query: 383 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 442
+E L + G+ +S R K +YSI+ KM+RK V +VYD RA+RV+V D
Sbjct: 235 REQLRQELHKNGVVAEVSGRPKHIYSIYKKMKRKGVDFSEVYDVRAVRVLVND------- 287
Query: 443 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 502
++ CY+ L +VH LW PI GEFDDYI +PK + Y+SLHTAV GP+ ALEVQIRT M
Sbjct: 288 --LKDCYTALGVVHSLWQPIPGEFDDYIAHPKGNDYRSLHTAVVGPEEKALEVQIRTHDM 345
Query: 503 HEYAEHGLAAHWLYKETGNK 522
H +AE G+AAHW YKE G +
Sbjct: 346 HNHAELGVAAHWRYKEGGRQ 365
Score = 63.2 bits (152), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 79/173 (45%), Gaps = 23/173 (13%)
Query: 121 KTGDP-YLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEV 179
T DP + H + T ILA +++VA IL + E L + FG+ V
Sbjct: 49 NTEDPDAMRHVLGTAVILAHQNLDQ-----ESIVAAILQGAAEHDPEVLAKVAAIFGEGV 103
Query: 180 AKLVAGVSRLSYINQL-----------------LRRHRRINVNQGTLGHEELADRLHNMR 222
A+LV GV+R+ I++ LR+ V + +LA+R MR
Sbjct: 104 ARLVDGVARMGQISEYSAPAGGDKREQGAHIESLRKMLLAMVEDIRVVLIKLAERTQAMR 163
Query: 223 TIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
+ VA E I+ LA+RLG+W +K ELEDL F L+P +++K+
Sbjct: 164 ELSHADEDTRHRVAHEVQDIFAPLANRLGVWQVKWELEDLSFRYLEPDLYKKI 216
>gi|254481349|ref|ZP_05094594.1| RelA/SpoT family protein [marine gamma proteobacterium HTCC2148]
gi|214038512|gb|EEB79174.1| RelA/SpoT family protein [marine gamma proteobacterium HTCC2148]
Length = 706
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/149 (48%), Positives = 95/149 (63%), Gaps = 9/149 (6%)
Query: 383 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 442
K LL G+E + R K +YSI+ KM+RK +G +VYD RA+R++V
Sbjct: 208 KALLTDVLQQAGLEFEIEGRAKHIYSIWRKMQRKGIGFSQVYDIRAVRILV--------- 258
Query: 443 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 502
P I+ CY+ L +VH LW I EFDDYI +PK +GY+SLHTAV GP+G LEVQIRT++M
Sbjct: 259 PEIKDCYATLGLVHGLWRNIPNEFDDYIASPKENGYRSLHTAVIGPEGKILEVQIRTRQM 318
Query: 503 HEYAEHGLAAHWLYKETGNKLQSISSMDE 531
HE AE G+ AHW YK + + SS +E
Sbjct: 319 HEEAELGVCAHWRYKGSDSTPGMASSYEE 347
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 74/171 (43%), Gaps = 30/171 (17%)
Query: 128 THCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVS 187
+ C G + +LI + D ++AG+L+ V + + +EE FG VA L+ GV
Sbjct: 26 SDCFRAG-LDVVLILAELHVGTDCLLAGMLYRTVREKRIEIPEVEERFGAGVASLLRGVL 84
Query: 188 RLSYINQLLRRHRRINVNQGTLGHE-----------------------ELADRLHNMRTI 224
R++ I L R +Q LG +LA+R +R +
Sbjct: 85 RMAAIGDL-----RPQQDQPVLGQAHAQKDNVRKMLIALVDDVRVALIKLAERTCAIRAV 139
Query: 225 YALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
+ VA+E ++ LA RLG+ LK ELEDL F + +RK+
Sbjct: 140 KD-DEDRREPVAREVFDVYAPLAHRLGIGHLKWELEDLSFRYIYADAYRKI 189
>gi|333909014|ref|YP_004482600.1| (p)ppGpp synthetase I SpoT/RelA [Marinomonas posidonica
IVIA-Po-181]
gi|333479020|gb|AEF55681.1| (p)ppGpp synthetase I, SpoT/RelA [Marinomonas posidonica
IVIA-Po-181]
Length = 751
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/137 (52%), Positives = 90/137 (65%), Gaps = 11/137 (8%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
L R K +YSI+ KM+RK++G +VYD RA+R++V + CY +L +VH L
Sbjct: 261 LMGRAKHIYSIWRKMKRKNIGFDEVYDVRAVRILVDEP---------MECYGVLGVVHNL 311
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI EFDDYI NPK +GYQSLHTAV GP G ALE+QIRT KMHE AE G+ AHW YK
Sbjct: 312 WRPIPQEFDDYISNPKSNGYQSLHTAVVGPQGRALEIQIRTHKMHEDAELGVCAHWKYK- 370
Query: 519 TGNKLQSISSMDESDIE 535
G L S S+ E ++
Sbjct: 371 -GTDLSSNSTSYEEKLQ 386
Score = 47.8 bits (112), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 27/191 (14%)
Query: 137 LAMLIPSSGKRA-VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL 195
L M+ SG RA D++VA L+ V + + + + FG +VA L+ GV R+ +++
Sbjct: 68 LEMVEILSGFRADQDSLVAAALYRAVREDQLPISRVVDMFGRKVASLIEGVIRMGEVSKN 127
Query: 196 LRRHRRI-----NVNQGTLGHEELADRLHNMRTIY--------ALPPAKAR------AVA 236
L + N NQ + L + ++R + A+ AK + AVA
Sbjct: 128 LTADTAVEVLGSNENQLESLRKMLVSIIDDVRVVLIKLAERACAIKEAKYQGEDRRVAVA 187
Query: 237 QETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRIT 296
E ++ LA RLG+ +K ELEDL F L P ++++ + W R+ + I
Sbjct: 188 LEVQSVYAPLAHRLGIGHIKWELEDLSFRYLYPTEYKRI-----AKWLDEKRLDRQQYID 242
Query: 297 TIVSSPPLDER 307
++ LD+R
Sbjct: 243 DVIGL--LDQR 251
>gi|149923136|ref|ZP_01911550.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Plesiocystis pacifica SIR-1]
gi|149815974|gb|EDM75489.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Plesiocystis pacifica SIR-1]
Length = 741
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/180 (43%), Positives = 107/180 (59%), Gaps = 11/180 (6%)
Query: 379 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 438
E LE+EL + ++ ++ R K +YSI KMRRK VG ++D A+RV+V D G
Sbjct: 233 ETLERELAEAE-----LDAEVNGRPKHIYSIVKKMRRKGVGFEDIFDVTAVRVIV-DGEG 286
Query: 439 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 498
+ + CY+ L +VH LW PI EFDDYI PK +GYQSLHTAV GP G LE+QIR
Sbjct: 287 KV---GKRDCYAALGLVHGLWNPIASEFDDYIARPKDNGYQSLHTAVVGPGGEPLEIQIR 343
Query: 499 TQKMHEYAEHGLAAHWLYKE--TGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQ 556
T++MH +AE+G+AAHW YKE G K ++ ++ L + L TDLF+
Sbjct: 344 TRQMHLFAEYGVAAHWAYKEGKRGAKQMERFNLLRQLVDWQKQLVDPKELAEALKTDLFE 403
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 214 LADRLHNMRTIYALPPAKARA-VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 272
L+DRL +R + L A AR +A ET ++ LA+RLG+W LK ELEDL L P+ +
Sbjct: 151 LSDRLEVIRDLRTLDDADARRRIATETREVFAPLANRLGIWQLKWELEDLAMRELDPEQY 210
Query: 273 RKMRADLASMWSPRNRV 289
R + L++ + R RV
Sbjct: 211 RDITTKLSTKRAERQRV 227
>gi|414887563|tpg|DAA63577.1| TPA: hypothetical protein ZEAMMB73_929416 [Zea mays]
Length = 614
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 128/227 (56%), Gaps = 20/227 (8%)
Query: 83 PGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIP 142
P ++ G + + IF DE V++A A+ AH GQ R +GDPYL HC+ T +LA L
Sbjct: 116 PSAALIAGAQ-SRHAIFRDELVRRAFTAAEAAHRGQVRASGDPYLQHCVETAALLAELGA 174
Query: 143 SSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH--- 199
V AG+LHD VDDA G I E FG VA LV GVS LS++++L RR+
Sbjct: 175 GPA-----VVAAGLLHDTVDDAGLGYGFISEHFGAGVADLVKGVSNLSHLSKLARRNDTA 229
Query: 200 RRIN----VNQGTLGHEE-------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 248
RI+ + L E+ LADRLHNMRT+ +L K ++VA+ETL I+ LA+
Sbjct: 230 SRIDEADRLRIVFLAMEDARAVLIKLADRLHNMRTLDSLSKTKQQSVAKETLEIFAPLAN 289
Query: 249 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRI 295
+LG+ K +LE+LCF L P+ F ++ L +++ +RR+
Sbjct: 290 QLGILNWKEQLENLCFKYLYPENFDELSTKLIEIYNIDMIAAATRRL 336
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 75/117 (64%), Gaps = 9/117 (7%)
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R KS+YSI+ KM RK + + K+YD +RV++ +K C++ L+I+H LW
Sbjct: 353 RHKSMYSIYRKMARKKLVMDKIYDIHGVRVILENKAD---------CFATLEIIHHLWPR 403
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
I G+F DYI +PKP+ YQSLHT V LE+QIRT+ MH AE G+AAHW YKE
Sbjct: 404 IPGKFKDYINSPKPNRYQSLHTVVLTEQTLPLEIQIRTRDMHLQAEFGIAAHWRYKE 460
>gi|357419457|ref|YP_004932449.1| (p)ppGpp synthetase I SpoT/RelA [Thermovirga lienii DSM 17291]
gi|355396923|gb|AER66352.1| (p)ppGpp synthetase I, SpoT/RelA [Thermovirga lienii DSM 17291]
Length = 775
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 89/133 (66%), Gaps = 9/133 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ ++ R K YSI+ KMRRK++ + +++D ALRV+V D + CY++L
Sbjct: 280 GIKAHITGRAKHFYSIYEKMRRKNLSLEELFDLLALRVIVDD---------VATCYTVLG 330
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH +W P+ G+FDDYI NPK + YQSLHTAV GP G LEVQIRT MH AE+G+A+H
Sbjct: 331 VVHTIWKPLPGQFDDYIANPKSNMYQSLHTAVIGPSGEPLEVQIRTWDMHWLAEYGVASH 390
Query: 514 WLYKETGNKLQSI 526
W YKE KL +
Sbjct: 391 WRYKEGKQKLDEL 403
Score = 105 bits (263), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 98/180 (54%), Gaps = 14/180 (7%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A FA AH GQFR + +PY+ H I ILA + + V+T+ A +LHDV++D
Sbjct: 77 EAFVFAALAHDGQFRLSKEPYVVHPIRVAAILAEM-----ELDVNTLEAALLHDVLEDTS 131
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRL---------SYINQLLRRHRRINVNQGTLGHEELAD 216
+ + +FG +V LV GV++L Y + LR+ + + +LAD
Sbjct: 132 VTPEELSNKFGRDVLLLVDGVTKLGKITFKSFEDYQAENLRKMFLVMAKDVRVVLIKLAD 191
Query: 217 RLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 276
RLHNM+TI L K +A+ETL I+ LA RLG++ +K ELED F + P+ + +R
Sbjct: 192 RLHNMKTIQYLRMDKQIRIAKETLEIYAPLAHRLGIYQIKRELEDAAFKIADPEAYYDIR 251
>gi|347819089|ref|ZP_08872523.1| (p)ppGpp synthetase I SpoT/RelA [Verminephrobacter aporrectodeae
subsp. tuberculatae At4]
Length = 737
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/140 (50%), Positives = 89/140 (63%), Gaps = 10/140 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+ ++ R K +YSI KMR K + +V+D RALRV+V P ++ CY+ L
Sbjct: 249 ISASVQGRPKHIYSIVKKMRGKSLDFDQVFDIRALRVIV---------PTVKDCYAALSW 299
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH PI EFDDYI PKP+GYQSLHT V+ DG +E+QIRTQ MHE+AEHG+AAHW
Sbjct: 300 VHEQLQPIVEEFDDYIARPKPNGYQSLHTIVRDADGRPIEIQIRTQAMHEHAEHGVAAHW 359
Query: 515 LYKETGNK-LQSISSMDESD 533
YKE GNK +S+ E D
Sbjct: 360 AYKEAGNKGYAGVSAAGEYD 379
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 82/190 (43%), Gaps = 29/190 (15%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A AFA+ G+ +G+ L H + A+L G A+ ++ AC
Sbjct: 38 RARAFAEPLIAGETLDSGENTLAHA---DAVAALLKEIGGSEAMQAAA------YLEHAC 88
Query: 166 ESLGSIEE----EFGDEVAKLVAGVSRLSYINQLLRRHRRI--------NVNQGTLGHEE 213
L EE FG A L ++L + Q R + + NV + L
Sbjct: 89 MHLNKPEEVIAKTFGAHFATLAMESTKLMRVQQQARAAQHVDDPAVQTENVRKMLLAFSR 148
Query: 214 --------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFA 265
LA RL +R A + ++A+E+L ++ LA+RLG+W LK ELEDL
Sbjct: 149 DLSVVLLHLASRLQTLRYHAANKRPVSPSMARESLQVFAPLANRLGIWQLKWELEDLALR 208
Query: 266 VLQPQIFRKM 275
L+P ++K+
Sbjct: 209 FLEPDTYKKV 218
>gi|398803829|ref|ZP_10562843.1| (p)ppGpp synthetase, RelA/SpoT family [Polaromonas sp. CF318]
gi|398095693|gb|EJL86028.1| (p)ppGpp synthetase, RelA/SpoT family [Polaromonas sp. CF318]
Length = 753
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 88/141 (62%), Gaps = 10/141 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ + R K +YSI KMR K + +V+D RALRV+ D G CY+ L
Sbjct: 252 GIAALVQGRPKHIYSIVKKMRGKSLDFEQVFDIRALRVIAADVKG---------CYAALG 302
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
VH + P+DGEFDDYI PK +GYQSLHT V+ G A+E+Q+RTQ MH++AEHG+AAH
Sbjct: 303 YVHSRFTPVDGEFDDYIAKPKSNGYQSLHTVVRDEAGRAVEIQVRTQAMHDHAEHGVAAH 362
Query: 514 WLYKETGNK-LQSISSMDESD 533
W YKE G K +S+ E D
Sbjct: 363 WAYKEAGTKGYGGVSASSEYD 383
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 77/196 (39%), Gaps = 39/196 (19%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A AFA+ + TG+ L H IL + S +A +V AC
Sbjct: 38 RARAFAEPLIASETHDTGENILAHADAVAAILKTIGGSEAMQAATYLVY---------AC 88
Query: 166 ESLGSIEE----EFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE--------- 212
+ L +E FG A L ++L Q+ R+ R N L
Sbjct: 89 QHLTKPQEVITKAFGANYAALAMETTKLV---QVQRQARSANAKAQLLDDPAAQTENVRK 145
Query: 213 --------------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 258
LA RL +R A +A E+L ++ LA+RLG+W +K E
Sbjct: 146 MLLAFSRDLRVVMLRLASRLQTLRHYAATRQTAPLPLAYESLHVFAPLANRLGIWQIKWE 205
Query: 259 LEDLCFAVLQPQIFRK 274
+EDL F L+P+ +++
Sbjct: 206 MEDLAFRFLEPETYKQ 221
>gi|407939728|ref|YP_006855369.1| (p)ppGpp synthetase I SpoT/RelA [Acidovorax sp. KKS102]
gi|407897522|gb|AFU46731.1| (p)ppGpp synthetase I SpoT/RelA [Acidovorax sp. KKS102]
Length = 737
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/140 (50%), Positives = 90/140 (64%), Gaps = 10/140 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+ T++ R K +YSI KMR K + +V+D RALRVVV P ++ CY+ L
Sbjct: 249 ISATVAGRPKHIYSIVKKMRGKSLNFDQVFDIRALRVVV---------PTVKDCYAALSW 299
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH + PI EFDDYI PKP+GYQSLHT V+ +G +E+QIRTQ MHE+AEHG+AAHW
Sbjct: 300 VHEQFKPIVEEFDDYIAKPKPNGYQSLHTIVRDDNGKPIEIQIRTQAMHEHAEHGVAAHW 359
Query: 515 LYKETGNK-LQSISSMDESD 533
YKE G K +S+ E D
Sbjct: 360 AYKEAGAKGYAGVSATGEYD 379
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 86/193 (44%), Gaps = 24/193 (12%)
Query: 102 EQVQ---KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILH 158
EQV +A AFA+ G+ +G+ L H IL + S +A +V +H
Sbjct: 31 EQVNALARARAFAEPLMAGETLDSGENTLAHADAVAAILKGIGGSEAMQAASYLVHACIH 90
Query: 159 DVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI--------NVNQGTLG 210
++ E I + FG A L ++L + Q R + NV + L
Sbjct: 91 --LNKPEEV---IAKAFGANFAALAVETTKLMRVQQQARAAAPLDDPAVQTENVRKMLLA 145
Query: 211 HEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 262
LA RL +R A + ++A+E+L ++ LA+RLG+W +K ELEDL
Sbjct: 146 FSRDLRVVMLRLASRLQTLRFHAASKRPVSPSLARESLQVFAPLANRLGIWQVKWELEDL 205
Query: 263 CFAVLQPQIFRKM 275
F L+P ++++
Sbjct: 206 SFRFLEPDTYKEV 218
>gi|406942692|gb|EKD74870.1| hypothetical protein ACD_44C00312G0002 [uncultured bacterium]
Length = 728
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 119/429 (27%), Positives = 194/429 (45%), Gaps = 95/429 (22%)
Query: 99 FNDEQVQKAIAFAKRAHHGQFRKTGDPYLTH---CIHTGRILAMLIPSSGKRAVDTVVAG 155
F+ ++ K ++F + A H +GD + C G I+A ++ V+T+V
Sbjct: 25 FSQKRSAKEVSFLRHALHLAQVASGDHLTSEGQSCFQQGVIMAEILFELN-LDVETLVTA 83
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
+L++ V +A L I E+ V+ L+AGV ++ +N L +H I++
Sbjct: 84 LLYNTVRNADLRLEDISEQVSKGVSNLLAGVLQMEGVN-LWHKHHEIHIE---------- 132
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
N+R + + R V + LA RL + + L + + Q K+
Sbjct: 133 ----NLRKMLLVMVQDVRGV-------FIKLAERLCVLRYASTLNKV-----EQQ---KI 173
Query: 276 RADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLS-MKDLLEAVV 333
++ ++SP NR+G + + +D SF + + LL+A
Sbjct: 174 AHEVMDIYSPLANRLGLGQL------------KWELEDLSFRYLEPQTYKKLAKLLDA-- 219
Query: 334 PFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIP 393
R R ++ D+ + ++ L+KE ++
Sbjct: 220 ------RRLDRENYIQDV----------------------ISVIDKTLKKEGVV------ 245
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
+S R K +YSI+ KM+RK VG ++YD A+RV+V ++ CY +L
Sbjct: 246 --HFQISGRAKHIYSIYRKMKRKSVGYEEIYDVSAVRVLVD---------TVEQCYQVLS 294
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW PI EFDDYI +PK +GY SLHTAV GP +EVQIRT +MH +E G+AAH
Sbjct: 295 VVHHLWEPIAKEFDDYIAHPKANGYASLHTAVLGPQKRNVEVQIRTIEMHNVSELGVAAH 354
Query: 514 WLYKETGNK 522
W+YKE +
Sbjct: 355 WMYKEGATR 363
>gi|94310104|ref|YP_583314.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Cupriavidus
metallidurans CH34]
gi|93353956|gb|ABF08045.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Cupriavidus
metallidurans CH34]
Length = 742
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ ++ R K +YSI+ KMR K + +YD RA RV+V D I+ CY++L
Sbjct: 242 GIRAEVTGRPKHIYSIWKKMRGKALDFADLYDVRAFRVIVDD---------IKDCYTVLG 292
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH +W PI EFDDYI PK +GY+SLHT V G DG A EVQIRT +MH +AE+G+AAH
Sbjct: 293 IVHHIWQPIPREFDDYISRPKANGYKSLHTVVIGDDGRAFEVQIRTHEMHHFAEYGVAAH 352
Query: 514 WLYKETGNK 522
W YKE G K
Sbjct: 353 WRYKEAGGK 361
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 87/199 (43%), Gaps = 33/199 (16%)
Query: 104 VQKAIAFAKRAHHGQ---FRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI-LHD 159
V++A+A+ + G+ TG+ L+H RIL G R D A L
Sbjct: 20 VERALAYVREKADGEKPTTLPTGETVLSHAEGMLRIL------DGLRVDDAARAAACLFP 73
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE------ 213
+V IEE FG++VA+LV GV +L I + + + ++ +
Sbjct: 74 MVAFVPGVEAHIEERFGEDVARLVKGVRQLLRIGAIATQAEAVETSKSQAAARQEQVEAL 133
Query: 214 -----------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 256
LA RL +R + VA+ETL I+ LA+RLG+W +K
Sbjct: 134 RKMLLAFAQDIRVVLVRLASRLQTLRWLAQTKSQPLPGVARETLDIYAPLANRLGIWQMK 193
Query: 257 AELEDLCFAVLQPQIFRKM 275
ELEDL F QP+ ++++
Sbjct: 194 WELEDLAFRFEQPETYKRI 212
>gi|254785342|ref|YP_003072771.1| GTP pyrophosphokinase [Teredinibacter turnerae T7901]
gi|237686776|gb|ACR14040.1| GTP pyrophosphokinase [Teredinibacter turnerae T7901]
Length = 747
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/126 (52%), Positives = 88/126 (69%), Gaps = 9/126 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+E + R K +YSI+ KMRRK++G +VYD RA+R++V + + CY++L
Sbjct: 259 GVEAHIYGRAKHIYSIWRKMRRKNIGFSEVYDIRAVRILVNSE---------RECYTVLG 309
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+ LEVQIRT+ MH+ AE+G+ AH
Sbjct: 310 IVHALWRNIPREFDDYIANPKENGYRSLHTAVNGPNNQVLEVQIRTRTMHDEAEYGVCAH 369
Query: 514 WLYKET 519
W YK+T
Sbjct: 370 WRYKDT 375
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 35/176 (19%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
DT+VA +L+ V + + +EE+FG V L+ GV +++ I+ L + N+
Sbjct: 85 DTLVAAVLYRSVRERKLAADVVEEKFGKTVVGLIQGVQKMAAISGLSN-----HSNEHVF 139
Query: 210 GHE------------------------ELADRLHNMRTIYALPPAKARAVAQETLLIWCS 245
G E +L++R +R + P + + VA+E ++
Sbjct: 140 GQESAEQSENVRKMLVAMVDDVRVALIKLSERTCAIRAVKGAPVERRQKVAKEVSEVYAP 199
Query: 246 LASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR--NRVGYSRRITTIV 299
LA RLG+ +K ELEDL F L P ++ +A + R +R Y R+ +I+
Sbjct: 200 LAHRLGIGHIKWELEDLSFRYLHPFDYKY----IAKLLDERRVDRQAYIDRVISIL 251
>gi|121535597|ref|ZP_01667404.1| (p)ppGpp synthetase I, SpoT/RelA [Thermosinus carboxydivorans Nor1]
gi|121305837|gb|EAX46772.1| (p)ppGpp synthetase I, SpoT/RelA [Thermosinus carboxydivorans Nor1]
Length = 735
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/185 (43%), Positives = 119/185 (64%), Gaps = 18/185 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E VQKA AFA AH GQ+R +G+ Y+TH + +ILA L +D T+ AG+LHD
Sbjct: 26 ELVQKAYAFAGEAHRGQYRVSGEEYITHPLGVAKILADL-------QIDALTISAGLLHD 78
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRRINVNQGT---LG 210
VV+D +L IE++FG E+A LV GV++LS + Q L +R++ + +
Sbjct: 79 VVEDTPVTLEEIEKQFGKEIAMLVDGVTKLSRMEYKSKEEQQLESYRKMFLAMAKDIRVV 138
Query: 211 HEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
+LADRLHNMRT+ +PPAK + +A+ETL I+ LA+RLG++++K ELEDL F L+P+
Sbjct: 139 LIKLADRLHNMRTLKYMPPAKQKEIARETLEIFAPLANRLGIFSIKWELEDLAFRFLEPE 198
Query: 271 IFRKM 275
+ ++
Sbjct: 199 KYYEL 203
Score = 122 bits (306), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 79/128 (61%), Gaps = 9/128 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K YSI+ KM++ + + ++YD A+RV+V I+ CY+ L
Sbjct: 233 GIKAEIQGRPKHFYSIYKKMQKDNKDLSEIYDLSAVRVIVD---------TIKDCYAALG 283
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW PI G F DYI PK + YQSLHT V G G LE+QIRT +MH +E+G+AAH
Sbjct: 284 IVHTLWKPIPGRFKDYIAMPKSNMYQSLHTTVIGLQGQPLEIQIRTVEMHRTSEYGIAAH 343
Query: 514 WLYKETGN 521
W YKE G
Sbjct: 344 WRYKEGGK 351
>gi|365175246|ref|ZP_09362677.1| RelA/SpoT family protein [Synergistes sp. 3_1_syn1]
gi|363613138|gb|EHL64661.1| RelA/SpoT family protein [Synergistes sp. 3_1_syn1]
Length = 784
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/133 (49%), Positives = 89/133 (66%), Gaps = 9/133 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
+ ++ R K YSI+ KMRRK++ + ++YD ALRV+V I CY +L
Sbjct: 281 NINASIKGRPKHFYSIYEKMRRKNLSLEQLYDLLALRVIV---------KTIGECYQVLG 331
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH +W PI G FDDYI NPK + YQSLHT V GP+G LEVQIRT++MH AE+G+AAH
Sbjct: 332 LVHTIWKPIPGLFDDYIANPKSNMYQSLHTTVVGPEGEPLEVQIRTKEMHLLAEYGIAAH 391
Query: 514 WLYKETGNKLQSI 526
W YKE G+K+ ++
Sbjct: 392 WNYKEGGHKVDNL 404
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 111/196 (56%), Gaps = 18/196 (9%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P + + + +A F+ AH Q R TG+PY+ H + IL SS + +T+VA +
Sbjct: 69 PKDDMKMIGEAFVFSSVAHGKQRRHTGEPYIIHTVSVAAIL-----SSMEIDRETIVASL 123
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLS---------YINQLLRRHRRINVNQG 207
LHDV++D + + E+FG++V LV GV++L Y ++ LR+ +
Sbjct: 124 LHDVLEDTATTPQQLSEKFGEDVVILVDGVTKLGKLQFKSVEEYQSENLRKMFVVMAKDI 183
Query: 208 TLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL 267
+ +LADRLHNMRTI + K ++A+ETL I+ LA RLG++ +K ELEDL F +L
Sbjct: 184 RVVLIKLADRLHNMRTISSHKREKQLSIARETLEIYAPLAHRLGIYQVKRELEDLSFRIL 243
Query: 268 QPQIF----RKMRADL 279
P+++ R++R L
Sbjct: 244 DPEMYYDIKRRVRKKL 259
>gi|297834248|ref|XP_002885006.1| hypothetical protein ARALYDRAFT_897663 [Arabidopsis lyrata subsp.
lyrata]
gi|297330846|gb|EFH61265.1| hypothetical protein ARALYDRAFT_897663 [Arabidopsis lyrata subsp.
lyrata]
Length = 714
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/194 (42%), Positives = 112/194 (57%), Gaps = 19/194 (9%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF DE V KA A++AH GQ R +GDPYL HC+ T +LA + SS VVAG
Sbjct: 208 HKIFKDESVIKAFYEAEKAHRGQMRASGDPYLQHCVETAMLLANIGASS-----TVVVAG 262
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHR---------RINVNQ 206
+LHD +DD+ S I FG VA LV GVS+LS +++L R + R++
Sbjct: 263 LLHDTMDDSFMSYDYILRNFGAGVADLVEGVSKLSQLSKLARENNTACKTVEADRLHTMF 322
Query: 207 GTLGHE-----ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 261
+ +LADRLHNM+T+YAL P K + A+ETL I+ LA+RLG+ K +LE+
Sbjct: 323 LAMADARAVLIKLADRLHNMKTLYALSPVKQQRFAKETLEIFAPLANRLGISTWKVQLEN 382
Query: 262 LCFAVLQPQIFRKM 275
LCF L P +M
Sbjct: 383 LCFKHLYPNQHNEM 396
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 90/161 (55%), Gaps = 17/161 (10%)
Query: 366 DAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYD 425
D + +++ E+AL+KE SY L R KSLYSI+SKM +K + + +++D
Sbjct: 405 DEAMITSAIEKLEQALKKE---GISYH-----VLCGRHKSLYSIYSKMLKKKLTVDEIHD 456
Query: 426 ARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAV 485
LR++V D G CY L +VH LW + G+ DYI +PK +GYQSLHT V
Sbjct: 457 IHGLRLIV-DNEGD--------CYKALGVVHSLWSEVPGKLKDYITHPKFNGYQSLHTVV 507
Query: 486 QGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSI 526
LEVQIRTQ+MH AE G AAHW YKE K S
Sbjct: 508 MDNGTVPLEVQIRTQEMHLQAEFGFAAHWRYKEGDCKYSSF 548
>gi|168004491|ref|XP_001754945.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694049|gb|EDQ80399.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 573
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 123/210 (58%), Gaps = 25/210 (11%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVA- 154
Y +F D V KA A+ AH GQFR+ GD +L+HC+ T ILA ++G +TVVA
Sbjct: 40 YKVFCDPVVVKAFRMAEEAHRGQFRRNGDTFLSHCVETALILA----ATG--VGNTVVAA 93
Query: 155 GILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-------NVNQG 207
G+LHD +DD+ SL + G++VA LV+GVS+LS +QL R + ++
Sbjct: 94 GLLHDAIDDSNLSLQLLRGALGEDVASLVSGVSKLSEFSQLARDSNTVRDPTEADSLRTM 153
Query: 208 TLGHEE-------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 260
L + +ADRLHN+RT+ ALP K +A ETL I+ LA+RLG+W+ KAELE
Sbjct: 154 ILAMVDVRVVLIKIADRLHNLRTLGALPYLKQIGIANETLEIFAPLANRLGIWSWKAELE 213
Query: 261 DLCFAVLQPQIFRKMRADLASMWSPRNRVG 290
DLCF L+P + DL++ S R R G
Sbjct: 214 DLCFKCLKPVEHQ----DLSARLSERCREG 239
Score = 133 bits (334), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 97/162 (59%), Gaps = 19/162 (11%)
Query: 368 GIALTSLVACEEALEKELLISTSYIPGME-VTLSSRLKSLYSIFSKMRRKDVGIHKVYDA 426
G+ ++S+ ++AL E G++ V LS R K+LYSI+ KM +K ++ D
Sbjct: 239 GLVMSSIRDLDDALRNE---------GVQFVDLSGRPKNLYSIYKKMMKKKRTPEEILDV 289
Query: 427 RALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ 486
R LR++V D+N CY L IVH+LW + G+ DYI + KP+GY+SLHT V
Sbjct: 290 RGLRLIVSDENN---------CYEALQIVHKLWKQVPGKSKDYIAHSKPNGYKSLHTVVI 340
Query: 487 GPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISS 528
G DG LEVQIRT KMH AE+GLAAHW YKE + + SS
Sbjct: 341 GSDGYPLEVQIRTMKMHHQAEYGLAAHWRYKEDNTQHSAFSS 382
>gi|226945754|ref|YP_002800827.1| RelA/SpoT protein [Azotobacter vinelandii DJ]
gi|226720681|gb|ACO79852.1| RelA/SpoT protein [Azotobacter vinelandii DJ]
Length = 749
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ ++ R K +YSI+ KM++K + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIKADINGRAKHIYSIWRKMQKKGLQFSQIYDVRAVRVLV---------PEVRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GPDG LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHSLWRHIPREFDDYIANPKENGYRSLHTAVIGPDGKTLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQSISSMDESDI 534
W YK G L+S SS E I
Sbjct: 366 WRYK--GTDLKSTSSHYEEKI 384
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 72/143 (50%), Gaps = 17/143 (11%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------------- 193
D++VA +L+ V +L ++ FG VAKL+ GV R++ I+
Sbjct: 83 DSLVAAVLYRGVRQKQIALDEVQRRFGQVVAKLIEGVLRMAAISDSLNPRESLVLDAQTQ 142
Query: 194 -QLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+ LR+ V+ + +LA+R +R + + + VA+E I+ LA RLG+
Sbjct: 143 VENLRKMLVAMVDDVRVALIKLAERTCAIRAVKHADEERRQRVAREVSAIYAPLAHRLGI 202
Query: 253 WALKAELEDLCFAVLQPQIFRKM 275
+K ELEDL F L+P+ ++++
Sbjct: 203 GHIKWELEDLAFRYLEPEQYKQI 225
>gi|375105841|ref|ZP_09752102.1| (p)ppGpp synthetase, RelA/SpoT family [Burkholderiales bacterium
JOSHI_001]
gi|374666572|gb|EHR71357.1| (p)ppGpp synthetase, RelA/SpoT family [Burkholderiales bacterium
JOSHI_001]
Length = 741
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/129 (50%), Positives = 86/129 (66%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ + R K +YSI+ KM+ K + +V+D RALRV+V D + CY+ L
Sbjct: 242 GIGADVQGRPKHIYSIWKKMQGKRLHFEQVFDLRALRVIVAD---------VPACYAALA 292
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH+ + P+DGEFDDYI PK +GYQSLHT V DG +E+QIRT+ MH++AEHG+AAH
Sbjct: 293 IVHQRYRPVDGEFDDYIARPKANGYQSLHTVVLAEDGREVEIQIRTRAMHDHAEHGVAAH 352
Query: 514 WLYKETGNK 522
W YKE G K
Sbjct: 353 WAYKEAGTK 361
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 83/202 (41%), Gaps = 26/202 (12%)
Query: 91 VDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD 150
V + G + + +A FA+ GQ TG+ H R+L + + RA
Sbjct: 16 VRIAGVDDGGADALSRAREFARPLLIGQVLDTGEEAFAHAEGVDRVLQEIGAAPSMRAAA 75
Query: 151 TVV-AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
+V AG D+ + + FGD A LVA +L + Q R ++ Q
Sbjct: 76 YLVYAGDFLQKPDEV------VAKAFGDSYAHLVAYTRKLVQV-QRAARQAQVGAEQRAE 128
Query: 210 GHEE------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLG 251
E LA RL +R A A A+A E+ ++ LA+RLG
Sbjct: 129 QTERVRKMLLAFSRDLRVVLLRLASRLQTLRWFAATKAACPPALAWESQQVFAPLANRLG 188
Query: 252 LWALKAELEDLCFAVLQPQIFR 273
+W +K E+EDL F LQP ++
Sbjct: 189 IWQIKWEMEDLAFRFLQPDDYK 210
>gi|288574632|ref|ZP_06392989.1| (p)ppGpp synthetase I, SpoT/RelA [Dethiosulfovibrio peptidovorans
DSM 11002]
gi|288570373|gb|EFC91930.1| (p)ppGpp synthetase I, SpoT/RelA [Dethiosulfovibrio peptidovorans
DSM 11002]
Length = 753
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/135 (48%), Positives = 87/135 (64%), Gaps = 9/135 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K YSI KM RK + + ++YD A+R++V D I CY++L
Sbjct: 262 GIDALIKGRAKHFYSILEKMNRKGLSVDQLYDLLAMRIIVDD---------ITTCYTVLG 312
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH +W PI G+FDDYI NPK + YQSLHT V GP G LEVQIRT +MH AE+G+AAH
Sbjct: 313 IVHTIWKPIPGQFDDYIANPKNNMYQSLHTTVVGPSGEPLEVQIRTWEMHWLAEYGVAAH 372
Query: 514 WLYKETGNKLQSISS 528
W YKE +K+ + +
Sbjct: 373 WRYKEGADKMDDLDA 387
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 103/183 (56%), Gaps = 14/183 (7%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
++ +A+ FA AH Q R TG+PY+ HC++ ILA + K V T+ A +LHD ++
Sbjct: 56 ELGEALIFAAEAHGEQKRGTGEPYIIHCVYVASILADM-----KMDVKTMEAALLHDCIE 110
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLS---------YINQLLRRHRRINVNQGTLGHEE 213
D + ++ E FG+EV LV GV++L Y + LR+ + + +
Sbjct: 111 DTVVTKEALAERFGEEVGVLVDGVTKLGKLPFKSFEDYQAENLRKMFLVMAKDIRVVLIK 170
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LADR HNMRT+ AL K + +A+ETL I+ LA RLG++ +K LEDL F P ++
Sbjct: 171 LADRTHNMRTLGALRKDKQQRIAKETLEIYAPLAHRLGIYQVKRTLEDLAFKYYDPNMYY 230
Query: 274 KMR 276
+++
Sbjct: 231 EIK 233
>gi|87118649|ref|ZP_01074548.1| RelA/SpoT protein [Marinomonas sp. MED121]
gi|86166283|gb|EAQ67549.1| RelA/SpoT protein [Marinomonas sp. MED121]
Length = 747
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/130 (56%), Positives = 88/130 (67%), Gaps = 11/130 (8%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
L R K +YSI+ KM+RK++G +VYD RA+R++V DK CY +L VH L
Sbjct: 261 LMGRAKHIYSIWRKMKRKNIGFDEVYDVRAVRILV-DKT--------MDCYGVLGTVHTL 311
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI EFDDYI NPK +GYQSLHTAV GP+G A+E+QIRT KMHE AE G+ AHW YK
Sbjct: 312 WKPIPHEFDDYISNPKSNGYQSLHTAVVGPNGRAVEIQIRTHKMHEDAELGVCAHWKYK- 370
Query: 519 TGNKLQSISS 528
G L S SS
Sbjct: 371 -GTDLSSNSS 379
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 102/231 (44%), Gaps = 34/231 (14%)
Query: 137 LAMLIPSSGKRA-VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL 195
L M+ SG RA D+++A L+ VV + ++ + + FG +VA ++ GV R+ +++
Sbjct: 68 LEMVEILSGFRADQDSLLAAALYRVVREDQLAIEKVADMFGRKVASIIEGVIRMGEVSKN 127
Query: 196 LRRHRRINVNQGTLGHEE-----------------------LADRLHNMRTIYALPPAKA 232
L + V LG+ E LA+R ++ A+
Sbjct: 128 LSADTKAEV----LGNSENQLESLRKMLVSIIDDVRVVLVKLAERACAIKEAKHQDGARR 183
Query: 233 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYS 292
AVA E ++ LA RLG+ +K ELEDL F L P ++++ + W R+
Sbjct: 184 EAVALEVQSVYAPLAHRLGIGYIKWELEDLSFRYLYPVEYKRV-----AKWLDEKRIARQ 238
Query: 293 RRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 342
I ++S+ ++ + + +H+ S+ + + + FD + D R
Sbjct: 239 EYIDEVISTLDIELQKINIHADLMGRAKHIYSIWRKMKRKNIGFDEVYDVR 289
>gi|383758537|ref|YP_005437522.1| GTP pyrophosphokinase RelA [Rubrivivax gelatinosus IL144]
gi|381379206|dbj|BAL96023.1| GTP pyrophosphokinase RelA [Rubrivivax gelatinosus IL144]
Length = 745
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 85/127 (66%), Gaps = 9/127 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ + R K L+SI+ KMR K + I +V+D ALRV+V D G CY+ L
Sbjct: 247 GLRAEVYGRPKHLHSIWKKMRGKGLPIERVFDLSALRVIVDDVAG---------CYAALS 297
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
VH + +DGE+DDYI PKP+GYQSLHT V DG ALEVQIRT+ MHE+AEHG+AAH
Sbjct: 298 RVHECYRAVDGEYDDYIARPKPNGYQSLHTVVLDDDGRALEVQIRTRAMHEHAEHGVAAH 357
Query: 514 WLYKETG 520
W+YKE G
Sbjct: 358 WMYKEAG 364
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 81/190 (42%), Gaps = 24/190 (12%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVV-AGILHDVVD 162
+++A AFA+ G TG+P L H IL + + RA +V AG D +
Sbjct: 34 LERARAFAEPLLAGHLLDTGEPALVHADGVAAILQAIGAAPSMRAAAYLVYAG---DYLQ 90
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQG-----------TLGH 211
E + + FG A LV RL I + R + + H
Sbjct: 91 HPEEM---VAKAFGQSYASLVTHTRRLVQIQRATRAATVLEAQRQQQAEQVRKMLLAFSH 147
Query: 212 E------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFA 265
+ LA RL +R A +A+ET I+ LA+RLG+W +K ELEDL F
Sbjct: 148 DLRVVLLRLASRLQTLRWYAAERVPCPEVLAEETQQIFAPLANRLGIWQIKWELEDLAFR 207
Query: 266 VLQPQIFRKM 275
LQP ++++
Sbjct: 208 FLQPDEYKRI 217
>gi|404400825|ref|ZP_10992409.1| (p)ppGpp synthetase SpoT/RelA [Pseudomonas fuscovaginae UPB0736]
Length = 746
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/152 (50%), Positives = 96/152 (63%), Gaps = 16/152 (10%)
Query: 371 LTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALR 430
S V C+ LE ELL + G++ +S R K +YSI+ KM+RK + ++YD RA+R
Sbjct: 238 FISEVMCQ--LENELLAT-----GVKADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVR 290
Query: 431 VVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDG 490
V+V P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G
Sbjct: 291 VLV---------PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEG 341
Query: 491 SALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
LEVQIRT MHE AE G+ AHW YK T K
Sbjct: 342 KVLEVQIRTHAMHEEAELGVCAHWKYKGTDVK 373
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 17/143 (11%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------------- 193
D++VA +L+ V L ++ ++FG VAKL+ GV R++ I+
Sbjct: 82 DSLVAAVLYRGVRQGQVQLQAVSQKFGPVVAKLIDGVQRMAAISASLSPRQSQVMGSQVQ 141
Query: 194 -QLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+ LR+ V+ + +LA+R +R + K VA+E I+ LA RLG+
Sbjct: 142 VENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADEEKRNRVAREVFDIYAPLAHRLGI 201
Query: 253 WALKAELEDLCFAVLQPQIFRKM 275
+K ELEDL F L+P ++++
Sbjct: 202 GHIKWELEDLSFRYLEPDQYKQI 224
>gi|384083087|ref|ZP_09994262.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [gamma
proteobacterium HIMB30]
Length = 709
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 120/417 (28%), Positives = 190/417 (45%), Gaps = 98/417 (23%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
QV++A ++++AH GQ R++GDPY+ H + ILA + + +++A +LHDV++
Sbjct: 26 QVRRAYLYSEQAHDGQKRRSGDPYIIHPLQVAEILADM-----RMDHQSLMAAMLHDVIE 80
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMR 222
D + +++ +FGD VA+LV GVS+L++I+ R E A+ M
Sbjct: 81 DTGIAKDALQSQFGDAVAELVDGVSKLTHISFETR-------------AEAQAENFQKMT 127
Query: 223 TIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASM 282
A+A++ +I LA RL L P+ R++ + +
Sbjct: 128 L----------AMARDIRVIIVKLADRLHNMR--------TIGSLNPEKRRRIARETLDI 169
Query: 283 WSP-RNRVG-YSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSD 340
+SP NR+G Y R + H L+ + A+ P I +
Sbjct: 170 YSPIANRLGMYELR-----------------------SELHELAYR----AMYPMRI--E 200
Query: 341 RRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLS 400
R +R A + + + K+V + L + + ALEK ++ +
Sbjct: 201 RIER-------AVQNVSGNRKKIVSEI------LESLKGALEKS---------AIKARVE 238
Query: 401 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 460
R K+ SI+ KMR + + D A R+V ++ CY L IVH L+
Sbjct: 239 GREKAANSIYRKMRDQSKSFSDIMDVYAFRIVTD---------SVDDCYRTLGIVHNLYK 289
Query: 461 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 517
P G F DYI PK +GYQSLHT + G G +E+QIRT +M A G+AAHWLYK
Sbjct: 290 PRPGRFKDYIAIPKANGYQSLHTTLFGMHGVPIEIQIRTSEMDAMASGGIAAHWLYK 346
>gi|88813282|ref|ZP_01128521.1| (p)ppGpp synthetase I [Nitrococcus mobilis Nb-231]
gi|88789454|gb|EAR20582.1| (p)ppGpp synthetase I [Nitrococcus mobilis Nb-231]
Length = 737
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 124/418 (29%), Positives = 189/418 (45%), Gaps = 101/418 (24%)
Query: 111 AKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGS 170
A+ + GQ R +G+ H + ILA L + D ++AG+ H A SLG
Sbjct: 44 AQSVYSGQHRTSGEGCFQHALSVATILAGL-----RLDADAIIAGLFH-----ALPSLGV 93
Query: 171 IE-----EEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTIY 225
E EFG+ V L+ GV++++ +++ R + QGT E L +
Sbjct: 94 FEPTRLAAEFGELVPSLIDGVAQVATLSE----QREPSGKQGTGQVEALRKMIL------ 143
Query: 226 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP 285
A+A++ ++ +LA RL LE L AV Q M +++P
Sbjct: 144 --------AMARDIRVVLIALAQRL---VDIRTLERLSLAVQQ-----HMARQTLELYAP 187
Query: 286 -RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKR 344
NR+G SR + +D S + D R+
Sbjct: 188 LANRLGLSRIKWEL------------EDRSLRILEPE------------------DYRRI 217
Query: 345 TKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLK 404
+ L + K E +++ + +Q A A ++A G+E ++ R K
Sbjct: 218 ARSLAE--KRVEREREIRALQRRASA-----ALQQA-------------GIEAQVAGRAK 257
Query: 405 SLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDG 464
+YSI+ KM++K +G H + D RA+RV+V I CY+ L ++ LW PI
Sbjct: 258 HIYSIWRKMQQKSLGFHDLLDIRAIRVLV---------RTIPDCYAALGVIQSLWQPIPH 308
Query: 465 EFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
+DDYI PK + YQSLH AV GP G +LEVQIRT++MH+ AE G+AAHW YKE G +
Sbjct: 309 GYDDYIATPKANNYQSLHAAVIGPTGKSLEVQIRTREMHQRAELGVAAHWRYKEGGQR 366
>gi|430809513|ref|ZP_19436628.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Cupriavidus sp. HMR-1]
gi|429498027|gb|EKZ96543.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Cupriavidus sp. HMR-1]
Length = 742
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 66/129 (51%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ ++ R K +YSI+ KMR K + +YD RA RV+V D I+ CY++L
Sbjct: 242 GIRAEVTGRPKHIYSIWKKMRGKALDFADLYDVRAFRVIVDD---------IKDCYTVLG 292
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH +W PI EFDDYI PK +GY+SLHT V G DG A EVQIRT +MH +AE+G+AAH
Sbjct: 293 IVHHIWQPIPREFDDYISRPKANGYKSLHTVVIGDDGRAFEVQIRTHEMHHFAEYGVAAH 352
Query: 514 WLYKETGNK 522
W YKE G +
Sbjct: 353 WRYKEAGGR 361
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 86/199 (43%), Gaps = 33/199 (16%)
Query: 104 VQKAIAFAKRAHHGQ---FRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI-LHD 159
V++A+A+ + G+ TG+ L+H RIL G R D A L
Sbjct: 20 VERALAYVREKADGEKPTTLPTGETVLSHAEGMLRIL------DGLRVDDAARAAACLFP 73
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE------ 213
+V IEE FG++VA+LV GV +L I + + ++ +
Sbjct: 74 MVAFVPGVEAHIEERFGEDVARLVKGVRQLLRIGAIATQAETAETSKSQAAARQEQVEAL 133
Query: 214 -----------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 256
LA RL +R + VA+ETL I+ LA+RLG+W +K
Sbjct: 134 RKMLLAFAQDIRVVLVRLASRLQTLRWLAQTKSQPLPGVARETLDIYAPLANRLGIWQMK 193
Query: 257 AELEDLCFAVLQPQIFRKM 275
ELEDL F QP+ ++++
Sbjct: 194 WELEDLAFRFEQPETYKRI 212
>gi|160872046|ref|ZP_02062178.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase) [Rickettsiella
grylli]
gi|159120845|gb|EDP46183.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase) [Rickettsiella
grylli]
Length = 736
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 61/121 (50%), Positives = 85/121 (70%), Gaps = 9/121 (7%)
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R+K +YSI+ KM++K + ++YD A+R++V ++ CY +L I+H LW P
Sbjct: 255 RVKHIYSIYKKMQQKKLKFEELYDLNAIRILVS---------TVRDCYHVLSIIHNLWSP 305
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
I G+FDDYI PKP+GY+S+HTAV GP LE+QIRTQ+MH+ +EHGLAAHW YKET
Sbjct: 306 IAGQFDDYISTPKPNGYRSIHTAVIGPHKKVLEIQIRTQQMHQESEHGLAAHWQYKETAQ 365
Query: 522 K 522
+
Sbjct: 366 Q 366
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 74/139 (53%), Gaps = 13/139 (9%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYI-----------NQL--L 196
+T+ A +++ V+ A L ++ E G VAK++ G +++ I QL +
Sbjct: 78 ETIAASLIYSCVNYAELCLDTVREHLGPNVAKIIEGAKQMNAIRIASPAANLHQTQLENI 137
Query: 197 RRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 256
R+ V + +LA+R MRT+ L ++A A+ETL I+ SLA+RLG+ L+
Sbjct: 138 RKMLLAMVKDMRVVLIKLAERTATMRTLDMLDTKTSQAYARETLDIYASLANRLGVGQLQ 197
Query: 257 AELEDLCFAVLQPQIFRKM 275
ELEDL L+P ++ ++
Sbjct: 198 WELEDLSLHYLEPTVYTQI 216
>gi|420141146|ref|ZP_14648853.1| GTP pyrophosphokinase [Pseudomonas aeruginosa CIG1]
gi|403246117|gb|EJY59866.1| GTP pyrophosphokinase [Pseudomonas aeruginosa CIG1]
Length = 747
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 92/143 (64%), Gaps = 13/143 (9%)
Query: 383 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 442
KE L +T G++ LS R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 248 KEALAAT----GVQADLSGRAKHIYSIWRKMQRKGLDFSQIYDVRAVRVLV--------- 294
Query: 443 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 502
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT M
Sbjct: 295 PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSM 354
Query: 503 HEYAEHGLAAHWLYKETGNKLQS 525
HE AE G+ AHW YK T K S
Sbjct: 355 HEEAELGVCAHWRYKGTDVKASS 377
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 72/143 (50%), Gaps = 17/143 (11%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLR-RHRRINVNQGT 208
+++VA +++ V + +L ++ + FG VAKL+ GV R++ I+ L RH + Q
Sbjct: 83 ESLVAAVIYRGVREGKITLEAVNKHFGPVVAKLIEGVLRMAAISASLNPRHSMVLGTQAQ 142
Query: 209 LGHE----------------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+ + +LA+R +R + K VA+E I+ LA RLG+
Sbjct: 143 VENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADEEKRHRVAREVFDIYAPLAHRLGI 202
Query: 253 WALKAELEDLCFAVLQPQIFRKM 275
+K ELEDL F L+P ++++
Sbjct: 203 GHIKWELEDLSFRYLEPDQYKQI 225
>gi|15596131|ref|NP_249625.1| GTP pyrophosphokinase [Pseudomonas aeruginosa PAO1]
gi|107100390|ref|ZP_01364308.1| hypothetical protein PaerPA_01001415 [Pseudomonas aeruginosa PACS2]
gi|116048857|ref|YP_792342.1| GTP pyrophosphokinase [Pseudomonas aeruginosa UCBPP-PA14]
gi|218893097|ref|YP_002441966.1| GTP pyrophosphokinase [Pseudomonas aeruginosa LESB58]
gi|254245218|ref|ZP_04938540.1| GTP pyrophosphokinase [Pseudomonas aeruginosa 2192]
gi|296390712|ref|ZP_06880187.1| GTP pyrophosphokinase [Pseudomonas aeruginosa PAb1]
gi|313105818|ref|ZP_07792081.1| GTP pyrophosphokinase [Pseudomonas aeruginosa 39016]
gi|355647570|ref|ZP_09055107.1| hypothetical protein HMPREF1030_04193 [Pseudomonas sp. 2_1_26]
gi|386060166|ref|YP_005976688.1| GTP pyrophosphokinase [Pseudomonas aeruginosa M18]
gi|386064659|ref|YP_005979963.1| GTP pyrophosphokinase [Pseudomonas aeruginosa NCGM2.S1]
gi|392985589|ref|YP_006484176.1| GTP pyrophosphokinase [Pseudomonas aeruginosa DK2]
gi|416858716|ref|ZP_11913485.1| GTP pyrophosphokinase [Pseudomonas aeruginosa 138244]
gi|416875655|ref|ZP_11918813.1| GTP pyrophosphokinase [Pseudomonas aeruginosa 152504]
gi|418583603|ref|ZP_13147672.1| GTP pyrophosphokinase [Pseudomonas aeruginosa MPAO1/P1]
gi|418588968|ref|ZP_13152898.1| GTP pyrophosphokinase [Pseudomonas aeruginosa MPAO1/P2]
gi|419753887|ref|ZP_14280285.1| GTP pyrophosphokinase [Pseudomonas aeruginosa PADK2_CF510]
gi|421162455|ref|ZP_15621297.1| GTP pyrophosphokinase [Pseudomonas aeruginosa ATCC 25324]
gi|421169697|ref|ZP_15627704.1| GTP pyrophosphokinase [Pseudomonas aeruginosa ATCC 700888]
gi|421176068|ref|ZP_15633737.1| GTP pyrophosphokinase [Pseudomonas aeruginosa CI27]
gi|421182068|ref|ZP_15639553.1| GTP pyrophosphokinase [Pseudomonas aeruginosa E2]
gi|421515556|ref|ZP_15962242.1| GTP pyrophosphokinase [Pseudomonas aeruginosa PAO579]
gi|424940017|ref|ZP_18355780.1| GTP pyrophosphokinase [Pseudomonas aeruginosa NCMG1179]
gi|451987418|ref|ZP_21935576.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas aeruginosa 18A]
gi|9946839|gb|AAG04323.1|AE004528_1 GTP pyrophosphokinase [Pseudomonas aeruginosa PAO1]
gi|115584078|gb|ABJ10093.1| GTP pyrophosphokinase [Pseudomonas aeruginosa UCBPP-PA14]
gi|126198596|gb|EAZ62659.1| GTP pyrophosphokinase [Pseudomonas aeruginosa 2192]
gi|218773325|emb|CAW29137.1| GTP pyrophosphokinase [Pseudomonas aeruginosa LESB58]
gi|310878583|gb|EFQ37177.1| GTP pyrophosphokinase [Pseudomonas aeruginosa 39016]
gi|334839201|gb|EGM17894.1| GTP pyrophosphokinase [Pseudomonas aeruginosa 138244]
gi|334841754|gb|EGM20376.1| GTP pyrophosphokinase [Pseudomonas aeruginosa 152504]
gi|346056463|dbj|GAA16346.1| GTP pyrophosphokinase [Pseudomonas aeruginosa NCMG1179]
gi|347306472|gb|AEO76586.1| GTP pyrophosphokinase [Pseudomonas aeruginosa M18]
gi|348033218|dbj|BAK88578.1| GTP pyrophosphokinase [Pseudomonas aeruginosa NCGM2.S1]
gi|354827764|gb|EHF11903.1| hypothetical protein HMPREF1030_04193 [Pseudomonas sp. 2_1_26]
gi|375047211|gb|EHS39760.1| GTP pyrophosphokinase [Pseudomonas aeruginosa MPAO1/P1]
gi|375052127|gb|EHS44586.1| GTP pyrophosphokinase [Pseudomonas aeruginosa MPAO1/P2]
gi|384399826|gb|EIE46191.1| GTP pyrophosphokinase [Pseudomonas aeruginosa PADK2_CF510]
gi|392321094|gb|AFM66474.1| GTP pyrophosphokinase [Pseudomonas aeruginosa DK2]
gi|404349284|gb|EJZ75621.1| GTP pyrophosphokinase [Pseudomonas aeruginosa PAO579]
gi|404525836|gb|EKA36084.1| GTP pyrophosphokinase [Pseudomonas aeruginosa ATCC 700888]
gi|404531419|gb|EKA41374.1| GTP pyrophosphokinase [Pseudomonas aeruginosa CI27]
gi|404534535|gb|EKA44267.1| GTP pyrophosphokinase [Pseudomonas aeruginosa ATCC 25324]
gi|404542788|gb|EKA52097.1| GTP pyrophosphokinase [Pseudomonas aeruginosa E2]
gi|451755036|emb|CCQ88099.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas aeruginosa 18A]
gi|453047959|gb|EME95672.1| GTP pyrophosphokinase [Pseudomonas aeruginosa PA21_ST175]
Length = 747
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 92/143 (64%), Gaps = 13/143 (9%)
Query: 383 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 442
KE L +T G++ LS R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 248 KEALAAT----GVQADLSGRAKHIYSIWRKMQRKGLDFSQIYDVRAVRVLV--------- 294
Query: 443 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 502
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT M
Sbjct: 295 PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSM 354
Query: 503 HEYAEHGLAAHWLYKETGNKLQS 525
HE AE G+ AHW YK T K S
Sbjct: 355 HEEAELGVCAHWRYKGTDVKASS 377
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 72/143 (50%), Gaps = 17/143 (11%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLR-RHRRINVNQGT 208
+++VA +++ V + +L ++ + FG VAKL+ GV R++ I+ L RH + Q
Sbjct: 83 ESLVAAVIYRGVREGKITLEAVNKHFGPVVAKLIEGVLRMAAISASLNPRHSMVLGTQAQ 142
Query: 209 LGHE----------------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+ + +LA+R +R + K VA+E I+ LA RLG+
Sbjct: 143 VENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADEEKRHRVAREVFDIYAPLAHRLGI 202
Query: 253 WALKAELEDLCFAVLQPQIFRKM 275
+K ELEDL F L+P ++++
Sbjct: 203 GHIKWELEDLSFRYLEPDQYKQI 225
>gi|333899695|ref|YP_004473568.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas fulva 12-X]
gi|333114960|gb|AEF21474.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas fulva 12-X]
Length = 748
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 93/141 (65%), Gaps = 11/141 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V PA++ CY+ L
Sbjct: 256 GIKADISGRAKHIYSIWRKMQRKGLQFSQIYDVRAVRVLV---------PAVRDCYTALG 306
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 307 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVLGPEGKVLEVQIRTSNMHEEAELGVCAH 366
Query: 514 WLYKETGNKLQSISSMDESDI 534
W YK G ++S S+ E I
Sbjct: 367 WRYK--GTDVKSGSNHYEEKI 385
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 18/144 (12%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------------- 193
D++VA +++ V + L + + FG VAKL+ GV R++ I+
Sbjct: 83 DSLVAAVIYRGVREGKIPLAEVRQRFGPVVAKLIEGVLRMAAISASLNPRGESTVLGSQA 142
Query: 194 --QLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLG 251
LR+ V+ + +LA+R +R + + + VA+E I+ LA RLG
Sbjct: 143 QVDNLRKMLVAMVDDVRVALIKLAERTCAIRAVKDTDEERRQRVAREVFDIYAPLAHRLG 202
Query: 252 LWALKAELEDLCFAVLQPQIFRKM 275
+ +K ELEDL F L+P+ ++++
Sbjct: 203 IGHIKWELEDLSFRYLEPEQYKQI 226
>gi|152985899|ref|YP_001349924.1| GTP pyrophosphokinase [Pseudomonas aeruginosa PA7]
gi|150961057|gb|ABR83082.1| GTP pyrophosphokinase [Pseudomonas aeruginosa PA7]
Length = 747
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 92/143 (64%), Gaps = 13/143 (9%)
Query: 383 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 442
KE L +T G++ LS R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 248 KEALAAT----GVQADLSGRAKHIYSIWRKMQRKGLDFSQIYDVRAVRVLV--------- 294
Query: 443 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 502
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT M
Sbjct: 295 PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSM 354
Query: 503 HEYAEHGLAAHWLYKETGNKLQS 525
HE AE G+ AHW YK T K S
Sbjct: 355 HEEAELGVCAHWRYKGTDVKASS 377
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 72/143 (50%), Gaps = 17/143 (11%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLR-RHRRINVNQGT 208
+++VA +++ V + +L ++ + FG VAKL+ GV R++ I+ L RH + Q
Sbjct: 83 ESLVAAVIYRGVREGTITLEAVNKRFGPVVAKLIEGVLRMAAISASLNPRHSMVLGTQAQ 142
Query: 209 LGHE----------------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+ + +LA+R +R + K VA+E I+ LA RLG+
Sbjct: 143 VENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADEEKRHRVAREVFDIYAPLAHRLGI 202
Query: 253 WALKAELEDLCFAVLQPQIFRKM 275
+K ELEDL F L+P ++++
Sbjct: 203 GHIKWELEDLSFRYLEPDQYKQI 225
>gi|254239285|ref|ZP_04932608.1| GTP pyrophosphokinase [Pseudomonas aeruginosa C3719]
gi|126171216|gb|EAZ56727.1| GTP pyrophosphokinase [Pseudomonas aeruginosa C3719]
Length = 747
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 92/143 (64%), Gaps = 13/143 (9%)
Query: 383 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 442
KE L +T G++ LS R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 248 KEALAAT----GVQADLSGRAKHIYSIWRKMQRKGLDFSQIYDVRAVRVLV--------- 294
Query: 443 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 502
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT M
Sbjct: 295 PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSM 354
Query: 503 HEYAEHGLAAHWLYKETGNKLQS 525
HE AE G+ AHW YK T K S
Sbjct: 355 HEEAELGVCAHWRYKGTDVKASS 377
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 72/143 (50%), Gaps = 17/143 (11%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLR-RHRRINVNQGT 208
+++VA +++ V + +L ++ + FG VAKL+ GV R++ I+ L RH + Q
Sbjct: 83 ESLVAAVIYRGVREGKITLEAVNKHFGPVVAKLIEGVLRMAAISASLNPRHSMVLGTQAQ 142
Query: 209 LGHE----------------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+ + +LA+R +R + K VA+E I+ LA RLG+
Sbjct: 143 VENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADEEKRHRVAREVFDIYAPLAHRLGI 202
Query: 253 WALKAELEDLCFAVLQPQIFRKM 275
+K ELEDL F L+P ++++
Sbjct: 203 GHIKWELEDLSFRYLEPDQYKQI 225
>gi|320594365|gb|ADW54434.1| RelA [Pseudomonas sp. DF41]
gi|342674037|gb|AEL31268.1| RelA [Pseudomonas chlororaphis]
Length = 747
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 92/143 (64%), Gaps = 13/143 (9%)
Query: 383 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 442
KE L +T G++ LS R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 248 KEALAAT----GVQADLSGRAKHIYSIWRKMQRKGLDFSQIYDVRAVRVLV--------- 294
Query: 443 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 502
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT M
Sbjct: 295 PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSM 354
Query: 503 HEYAEHGLAAHWLYKETGNKLQS 525
HE AE G+ AHW YK T K S
Sbjct: 355 HEEAELGVCAHWRYKGTDVKASS 377
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 17/143 (11%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLR-RHRRINVNQGT 208
+++VA +++ V + +L ++ + FG VAKL+ GV R++ I+ L RH + Q
Sbjct: 83 ESLVAAVIYRGVREGKITLEAVNKHFGPVVAKLIEGVLRMAAISASLNPRHSMVLGTQAQ 142
Query: 209 LGHEE----------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+ + LA+R +R + K VA+E I+ LA RLG+
Sbjct: 143 VENLRKMLVAMVDDVRVALIRLAERTCAIRAVKNADEEKRHCVAREVFDIYAPLAHRLGI 202
Query: 253 WALKAELEDLCFAVLQPQIFRKM 275
+K ELEDL F L+P ++++
Sbjct: 203 GHIKWELEDLSFRYLEPDQYKQI 225
>gi|134095007|ref|YP_001100082.1| (p)ppGpp synthetase I [Herminiimonas arsenicoxydans]
gi|133738910|emb|CAL61957.1| GTP pyrophosphokinase [Herminiimonas arsenicoxydans]
Length = 761
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 97/162 (59%), Gaps = 17/162 (10%)
Query: 378 EEALEKELLISTSY--------IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARAL 429
E+ +E+E + S G++ + R K ++SI+SK+R K++ +YD RA
Sbjct: 231 EKRVEREAFVENSIKRLKSEMAAAGIKAEVFGRPKHIFSIWSKLRGKEIEFSDLYDVRAF 290
Query: 430 RVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD 489
RV+V D ++ CY++L IVH +W PI EFDDYI PK +GYQSLHT V D
Sbjct: 291 RVIVDD---------VKTCYTVLGIVHNIWTPIPEEFDDYISRPKANGYQSLHTIVIAED 341
Query: 490 GSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDE 531
G LEVQ+RT MH++AE+G+AAHW YKE+G + DE
Sbjct: 342 GRPLEVQVRTNDMHDFAEYGVAAHWRYKESGGSNFAGQKYDE 383
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 25/151 (16%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQ--------------- 194
DT +A +L ++ A + IEE FG +V+ LVAGV +L +++
Sbjct: 75 DTRIAALLFELEMIAPAAAEKIEERFGKDVSDLVAGVRQLMRLHEATFTQHEAARNKNAA 134
Query: 195 --------LLRRHRRINVNQGTLGHEELADRLHNMRTI--YALPPAKARAVAQETLLIWC 244
+LR+ + + L R+ +R L ++R A+ET ++
Sbjct: 135 QEAAAQLEVLRKMLLAMASDMRVVLVRLGTRVTTLRYFADNKLVNERSRQYARETFDLYA 194
Query: 245 SLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
LA+RLG+W LK ELEDL F L+P+ +R++
Sbjct: 195 PLANRLGIWQLKWELEDLSFRFLEPEAYRRI 225
>gi|332524801|ref|ZP_08400994.1| GTP diphosphokinase [Rubrivivax benzoatilyticus JA2]
gi|332108103|gb|EGJ09327.1| GTP diphosphokinase [Rubrivivax benzoatilyticus JA2]
Length = 744
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 85/127 (66%), Gaps = 9/127 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ + R K L+SI+ KMR K + I +V+D ALRV+V D G CY+ L
Sbjct: 247 GIRAEVHGRPKHLHSIWKKMRGKGLPIERVFDLSALRVIVDDVAG---------CYAALS 297
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
VH + +DGE+DDYI PKP+GYQSLHT V DG ALEVQIRT+ MHE+AEHG+AAH
Sbjct: 298 RVHECFRAVDGEYDDYIARPKPNGYQSLHTVVLDDDGRALEVQIRTRAMHEHAEHGVAAH 357
Query: 514 WLYKETG 520
W+YKE G
Sbjct: 358 WMYKEAG 364
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 83/190 (43%), Gaps = 24/190 (12%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVV-AGILHDVVD 162
+++A AFA+ G TG+P L H IL + + RA +V AG D +
Sbjct: 34 LERARAFAEPLLAGHLLDTGEPALLHADGVAAILQAIGAAPSMRAAAYLVYAG---DYLQ 90
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQG-----------TLGH 211
E + + FG A LV RL I + R + + H
Sbjct: 91 HPEEM---VAKAFGQSYASLVTHTRRLVQIQRATRAASVLEAQRQQQAEQVRKMLLAFSH 147
Query: 212 E------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFA 265
+ LA RL +R A + +A+ET I+ LA+RLG+W +K ELEDL F
Sbjct: 148 DLRVVLLRLASRLQTLRWYAAERVPCPQELAEETQQIFAPLANRLGIWQIKWELEDLAFR 207
Query: 266 VLQPQIFRKM 275
LQP+ ++++
Sbjct: 208 FLQPEEYKRI 217
>gi|15231772|ref|NP_188021.1| RelA-SpoT like protein RSH2 [Arabidopsis thaliana]
gi|11994378|dbj|BAB02337.1| unnamed protein product [Arabidopsis thaliana]
gi|332641938|gb|AEE75459.1| RelA-SpoT like protein RSH2 [Arabidopsis thaliana]
Length = 709
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 83/194 (42%), Positives = 113/194 (58%), Gaps = 19/194 (9%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IFNDE V KA A++AH GQ R + DPYL HC+ T AML+ + G + VVAG
Sbjct: 203 HKIFNDESVIKAFYEAEKAHRGQMRASRDPYLQHCVET----AMLLANIGANST-VVVAG 257
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHR---------RINVNQ 206
+LHD +DD+ S I FG VA LV GVS+LS +++L R + R++
Sbjct: 258 LLHDTIDDSFMSYDYILRNFGAGVADLVEGVSKLSQLSKLARENNTACKTVEADRLHTMF 317
Query: 207 GTLGHE-----ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 261
+ +LADRLHNM+T+YAL P K + A+ETL I+ LA+RLG+ K +LE+
Sbjct: 318 LAMADARAVLIKLADRLHNMKTLYALSPVKQQRFAKETLEIFAPLANRLGISTWKVQLEN 377
Query: 262 LCFAVLQPQIFRKM 275
LCF L P +M
Sbjct: 378 LCFKHLYPNQHNEM 391
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 77/128 (60%), Gaps = 9/128 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
L R KSLYSI+SKM +K + + +++D LR++V D G CY L +VH L
Sbjct: 425 LCGRHKSLYSIYSKMLKKKLTVDEIHDIHGLRLIV-DNEGD--------CYKALGVVHSL 475
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W + G+ DYI +PK +GYQSLHT V LEVQIRTQ+MH AE G AAHW YKE
Sbjct: 476 WSEVPGKLKDYITHPKFNGYQSLHTVVMDNGTVPLEVQIRTQEMHLQAEFGFAAHWRYKE 535
Query: 519 TGNKLQSI 526
G K S
Sbjct: 536 GGCKYSSF 543
>gi|399521243|ref|ZP_10761983.1| GTP pyrophosphokinase [Pseudomonas pseudoalcaligenes CECT 5344]
gi|399110481|emb|CCH38542.1| GTP pyrophosphokinase [Pseudomonas pseudoalcaligenes CECT 5344]
Length = 747
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GIKADISGRAKHIYSIWRKMQRKGLQFSQIYDVRALRVLV---------PEVRDCYTTLG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVLGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQSISSMDESDI 534
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 97/203 (47%), Gaps = 31/203 (15%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGR-------ILAMLIPSSGKRAV 149
P + + +Q+A FA+ A Q T + + + T R ILA L K
Sbjct: 30 PALDRQALQEACEFARDAE--QQANTTEHHWSEGASTFRAGLDIAEILADL-----KLDQ 82
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------------- 193
D++VA +++ V + +L ++++ FG VAKL+ GV R++ I+
Sbjct: 83 DSLVAAVIYRGVREGKITLAAVQQRFGAVVAKLIEGVLRMAAISASINPRESVVVGSQTQ 142
Query: 194 -QLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+ LR+ V+ + +LA+R +R + K + VA+E I+ LA RLG+
Sbjct: 143 VENLRKMLVAMVDDVRVALIKLAERTCAIRAVKEADEDKRQRVAREVFDIYAPLAHRLGI 202
Query: 253 WALKAELEDLCFAVLQPQIFRKM 275
+K ELEDL F L+P ++++
Sbjct: 203 GHIKWELEDLSFRYLEPDQYKQI 225
>gi|325266683|ref|ZP_08133360.1| GTP diphosphokinase [Kingella denitrificans ATCC 33394]
gi|324982126|gb|EGC17761.1| GTP diphosphokinase [Kingella denitrificans ATCC 33394]
Length = 726
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+E ++ R K +YSI+ KM +K + +YD RA+RV+V + CYS+L
Sbjct: 242 GIECDVAGRPKHIYSIYRKMVKKKLDFDGLYDIRAVRVLVN---------TVPECYSVLG 292
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT +MHE+ E G+AAH
Sbjct: 293 IVHSLWQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGIEVQIRTNEMHEFNEFGVAAH 352
Query: 514 WLYKETGN 521
W YKE G
Sbjct: 353 WRYKEGGK 360
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 87/195 (44%), Gaps = 31/195 (15%)
Query: 104 VQKAIAFAKRAH-HGQFRKTGDPYLTHCIHTGRILAM--LIPSSGKRAVDTVVAGILHDV 160
+Q A+ A++ + G +P L H + ++A L+P S V A +L D
Sbjct: 26 LQAALQLAEQIYPAGAATTAQEPLLPHLLQAALMVADMDLLPES-------VAATVLTDA 78
Query: 161 VDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL------------------LRRHRRI 202
A + E G VA LV G+ + + +R+
Sbjct: 79 PAHADNWEERVTEACGGAVANLVKGIDEVQKLTHFAKVDSLATPEERAAQAETMRKMLLA 138
Query: 203 NVNQGTLGHEELADRLHNMRTIYALP--PAKARAVAQETLLIWCSLASRLGLWALKAELE 260
V+ + +LA R M+ + P PAK RA+A+ETL I+ LA+RLG+W LK +LE
Sbjct: 139 MVSDIRVVLIKLALRTRTMQFLSQTPDSPAK-RALAKETLDIFAPLANRLGVWQLKWQLE 197
Query: 261 DLCFAVLQPQIFRKM 275
DL F P+ +R++
Sbjct: 198 DLGFRHYNPEEYRRI 212
>gi|443469722|ref|ZP_21059876.1| GTP pyrophosphokinase [Pseudomonas pseudoalcaligenes KF707]
gi|442899174|gb|ELS25705.1| GTP pyrophosphokinase [Pseudomonas pseudoalcaligenes KF707]
Length = 748
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIKADISGRAKHIYSIWRKMQRKGLQFSQIYDVRAVRVLV---------PEVRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GPDG LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPDGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQS 525
W YK T K S
Sbjct: 366 WRYKGTDVKSSS 377
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 91/194 (46%), Gaps = 28/194 (14%)
Query: 99 FNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILH 158
F + Q+AIA R G T TG +A ++ + K +++VA +++
Sbjct: 43 FARDAEQQAIAAQNRWAEG----------TSSFQTGLEIAEIL-ADLKLDQESLVAAVIY 91
Query: 159 DVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN-----------------QLLRRHRR 201
V + L ++++ FG VAKL+ GV R++ I+ + LR+
Sbjct: 92 RGVREGKIQLQAVQQRFGAVVAKLIEGVLRMAAISASLNPRQSMVLGAQAQVENLRKMLV 151
Query: 202 INVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 261
V+ + +LA+R +R + K VA+E I+ LA RLG+ +K ELED
Sbjct: 152 AMVDDVRVALIKLAERTCAIREVKNADEEKRHRVAREVFDIYAPLAHRLGIGHIKWELED 211
Query: 262 LCFAVLQPQIFRKM 275
L F L+P+ ++++
Sbjct: 212 LSFRYLEPEQYKQI 225
>gi|294101598|ref|YP_003553456.1| (p)ppGpp synthetase I SpoT/RelA [Aminobacterium colombiense DSM
12261]
gi|293616578|gb|ADE56732.1| (p)ppGpp synthetase I, SpoT/RelA [Aminobacterium colombiense DSM
12261]
Length = 734
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 66/130 (50%), Positives = 85/130 (65%), Gaps = 9/130 (6%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+ R K YSI+ KM RK + + ++YD ALRVVV D + CY++L IVH +
Sbjct: 251 VKGRAKHFYSIYEKMNRKKLPVEQLYDLLALRVVVDD---------VAACYTVLGIVHTI 301
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI G+FDDYI NPK + YQSLHT V GP G LEVQIR+ +M+ AE+G+AAHW YKE
Sbjct: 302 WKPIPGQFDDYIANPKTNMYQSLHTTVVGPTGEPLEVQIRSAEMNRLAEYGIAAHWRYKE 361
Query: 519 TGNKLQSISS 528
GN L + +
Sbjct: 362 GGNVLDDLDA 371
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 102/184 (55%), Gaps = 14/184 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
+++ +A A AH Q R +GDPY+ H I+ ILA + + + T++A +LHDV+
Sbjct: 39 KKLGEAFVMAADAHGEQKRSSGDPYVVHSINVASILADM-----QLDLVTLIAALLHDVL 93
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLS---------YINQLLRRHRRINVNQGTLGHE 212
+D S ++ FGD+V LV GV++L Y + LR+ + +
Sbjct: 94 EDTALSAEKVKSAFGDDVITLVDGVTKLGKLPFKSFEDYQAENLRKMFVVMAKDIRVVLI 153
Query: 213 ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 272
+LADRLHNMRT+ AL K +A+ETL I+ LA RLG++ +K LEDL F P ++
Sbjct: 154 KLADRLHNMRTLGALRRDKQLRIAKETLEIYAPLAHRLGIYQVKRGLEDLAFKYSDPDMY 213
Query: 273 RKMR 276
++R
Sbjct: 214 YEIR 217
>gi|408480593|ref|ZP_11186812.1| GTP pyrophosphokinase, partial [Pseudomonas sp. R81]
Length = 599
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVEADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQS 525
W YK T K S
Sbjct: 366 WRYKGTDVKAGS 377
Score = 59.3 bits (142), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 26/171 (15%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D+++A +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLIAAVLYRGVREGHIQLATVGQRFGSVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 210 GHEE-------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 250
G E LA+R +R + K VA+E I+ LA RL
Sbjct: 141 GQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAHRL 200
Query: 251 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSS 301
G+ +K ELEDL F L+P +++ +A++ R R+ R IT +++
Sbjct: 201 GIGHIKWELEDLSFRYLEPDQYKQ----IATLLHER-RLDRERFITDVMNQ 246
>gi|339486235|ref|YP_004700763.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas putida S16]
gi|338837078|gb|AEJ11883.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas putida S16]
Length = 773
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 98/154 (63%), Gaps = 16/154 (10%)
Query: 381 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 440
L+ ELL + G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 274 LQNELLAT-----GVKADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 321
Query: 441 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 500
P I+ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 322 --PEIRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 379
Query: 501 KMHEYAEHGLAAHWLYKETGNKLQSISSMDESDI 534
MHE AE G+ AHW YK G ++S S+ E I
Sbjct: 380 GMHEEAELGVCAHWRYK--GTDVKSSSNHYEEKI 411
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 72/143 (50%), Gaps = 17/143 (11%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------------- 193
D++VA +++ V + +L + + FG V+KL+ GV R++ I+
Sbjct: 110 DSLVAAVIYRSVREGKVTLAEVSQRFGPVVSKLIDGVLRMAAISASLSPRQSLVLGSQAQ 169
Query: 194 -QLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+ LR+ V+ + +LA+R +R + A K VA+E I+ LA RLG+
Sbjct: 170 VENLRKMLVAMVDDVRVALIKLAERTCAIRAVKAADDEKRLRVAREVFDIYAPLAHRLGI 229
Query: 253 WALKAELEDLCFAVLQPQIFRKM 275
+K ELEDL F L+P ++++
Sbjct: 230 GHIKWELEDLSFRYLEPDQYKQI 252
>gi|440736805|ref|ZP_20916390.1| GTP pyrophosphokinase [Pseudomonas fluorescens BRIP34879]
gi|447917681|ref|YP_007398249.1| GTP pyrophosphokinase [Pseudomonas poae RE*1-1-14]
gi|440382737|gb|ELQ19229.1| GTP pyrophosphokinase [Pseudomonas fluorescens BRIP34879]
gi|445201544|gb|AGE26753.1| GTP pyrophosphokinase [Pseudomonas poae RE*1-1-14]
Length = 747
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVEADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQS 525
W YK T K S
Sbjct: 366 WRYKGTDVKAGS 377
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 21/145 (14%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D+++A +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLIAAVLYRGVREGHIELATVGQRFGSVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 210 GHEE-------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 250
G E LA+R +R + K VA+E I+ LA RL
Sbjct: 141 GQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAHRL 200
Query: 251 GLWALKAELEDLCFAVLQPQIFRKM 275
G+ +K ELEDL F L+P ++++
Sbjct: 201 GIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|410092308|ref|ZP_11288837.1| RelA/SpoT protein [Pseudomonas viridiflava UASWS0038]
gi|409760333|gb|EKN45487.1| RelA/SpoT protein [Pseudomonas viridiflava UASWS0038]
Length = 747
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 73/142 (51%), Positives = 91/142 (64%), Gaps = 14/142 (9%)
Query: 381 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 440
LE ELL + G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LENELLAT-----GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV------- 294
Query: 441 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 500
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 501 KMHEYAEHGLAAHWLYKETGNK 522
MHE AE G+ AHW YK T K
Sbjct: 353 SMHEEAELGVCAHWRYKGTDVK 374
Score = 63.2 bits (152), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 96/196 (48%), Gaps = 19/196 (9%)
Query: 98 IFNDEQVQKAIAFAKRAHHG-QFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
+ + E ++KA FA++A + K T TG +A ++ + K D++VA +
Sbjct: 31 VLDREVMKKACEFARQAEQNDKALKNHWADGTSSFQTGLEIAEIL-ADLKLDQDSLVAAV 89
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN-----------------QLLRRH 199
++ V + L +E++FG+ VAKL+ GV R++ I+ + LR+
Sbjct: 90 IYRGVREGVIPLPDVEQQFGETVAKLIDGVLRMAAISASLSPRQSLVLGSQAQVENLRKM 149
Query: 200 RRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAEL 259
V+ + +LA+R +R + K VA+E I+ LA RLG+ +K EL
Sbjct: 150 LVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRLGIGHIKWEL 209
Query: 260 EDLCFAVLQPQIFRKM 275
EDL F L+P ++++
Sbjct: 210 EDLSFRYLEPDQYKQI 225
>gi|229591916|ref|YP_002874035.1| GTP pyrophosphokinase [Pseudomonas fluorescens SBW25]
gi|229363782|emb|CAY51208.1| GTP pyrophosphokinase [Pseudomonas fluorescens SBW25]
Length = 747
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVEADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQS 525
W YK T K S
Sbjct: 366 WRYKGTDVKAGS 377
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 21/145 (14%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D+++A +L+ V + +L + + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLIAAVLYRGVREGHIALPIVSQRFGTVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 210 GHEE-------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 250
G E LA+R +R + K VA+E I+ LA RL
Sbjct: 141 GQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAHRL 200
Query: 251 GLWALKAELEDLCFAVLQPQIFRKM 275
G+ +K ELEDL F L+P ++++
Sbjct: 201 GIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|121611280|ref|YP_999087.1| (p)ppGpp synthetase I SpoT/RelA [Verminephrobacter eiseniae EF01-2]
gi|121555920|gb|ABM60069.1| (p)ppGpp synthetase I, SpoT/RelA [Verminephrobacter eiseniae
EF01-2]
Length = 736
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 64/128 (50%), Positives = 87/128 (67%), Gaps = 9/128 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+ ++ R K +YSI KMR K + +V+D RALRVVV P ++ CY+ L
Sbjct: 248 ISASVQGRPKHIYSIVRKMRGKALNFDQVFDIRALRVVV---------PTVKDCYAALSW 298
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH+ + PI+ EFDDYI PKP+GYQSLHT V+ +G +E+Q+RTQ MH +AEHG+AAHW
Sbjct: 299 VHQQFKPIEQEFDDYIARPKPNGYQSLHTVVRDDNGKPIEIQLRTQAMHRHAEHGMAAHW 358
Query: 515 LYKETGNK 522
+YKE G+K
Sbjct: 359 VYKEAGSK 366
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 21/185 (11%)
Query: 107 AIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACE 166
A AFA+ G +G+ L H IL + S +A +V +H + E
Sbjct: 38 ARAFAEPLLAGASLDSGENTLAHADAVAAILKGIGGSEAMQAASYLVQACIHL---NKPE 94
Query: 167 SLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI--------NVNQGTLGHEE----- 213
L I + FG A L ++L + + R + + NV + L
Sbjct: 95 EL--ITKTFGANFATLALETTQLMRVQRQARAAQPVDDPALQTENVRKMLLAFSRDLRVV 152
Query: 214 ---LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
LA RL +R A + + +E+L ++ LA+RLG+W +K ELEDLC L+P
Sbjct: 153 LLHLASRLQTLRFHAASKRPVSPGLVRESLQVFAPLANRLGIWQMKWELEDLCLRFLEPD 212
Query: 271 IFRKM 275
+++++
Sbjct: 213 VYKQV 217
>gi|304310589|ref|YP_003810187.1| GTP pyrophosphokinase [gamma proteobacterium HdN1]
gi|301796322|emb|CBL44530.1| GTP pyrophosphokinase [gamma proteobacterium HdN1]
Length = 755
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+E + R K +YSI+ KM+RK + ++VYD RA+RV+V P I+ CY+ L
Sbjct: 257 GIEAEVKGRAKHIYSIWRKMKRKSIDFYQVYDVRAVRVLV---------PEIRDCYAALG 307
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
I H LW I EFDDYI PK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 308 IAHNLWQHIPREFDDYIATPKENGYRSLHTAVLGPEGKVLEVQIRTFSMHEEAELGVCAH 367
Query: 514 WLYKETGNK 522
W YKE N+
Sbjct: 368 WRYKEGNNQ 376
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 72/144 (50%), Gaps = 18/144 (12%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT- 208
D++ A +++ V + +L S+ + G +AKL+ GV R++ I+ +++ + Q +
Sbjct: 84 DSLKAAVIYRAVREGQITLESVRKTAGPGIAKLIEGVLRMAAISVATNPEKKVVLGQSSD 143
Query: 209 -----------------LGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLG 251
+ +LA+R +R + P AK + VA+E I+ LA RLG
Sbjct: 144 QLDNLRKMLIAMIDDVRVALIKLAERTCAIRAVKDAPDAKRQRVAREVFDIYAPLAHRLG 203
Query: 252 LWALKAELEDLCFAVLQPQIFRKM 275
+ +K ELEDL F LQP + ++
Sbjct: 204 IGHIKWELEDLAFRYLQPDAYMRI 227
>gi|319762029|ref|YP_004125966.1| rela/spot family protein [Alicycliphilus denitrificans BC]
gi|317116590|gb|ADU99078.1| RelA/SpoT family protein [Alicycliphilus denitrificans BC]
Length = 748
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 86/128 (67%), Gaps = 9/128 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+ ++S R K +YSI KMR K + +V+D RALRV+V P+++ CY+ L
Sbjct: 260 ISASVSGRPKHIYSIVKKMRGKSLDFDQVFDIRALRVIV---------PSVKDCYAALSW 310
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH + I+ EFDDYI PKP+GYQSLHT V+ G A+E+QIRTQ MH++AEHG+AAHW
Sbjct: 311 VHSQFTSIEAEFDDYIARPKPNGYQSLHTVVRDEAGRAIEIQIRTQAMHDHAEHGVAAHW 370
Query: 515 LYKETGNK 522
YKE G K
Sbjct: 371 AYKEAGTK 378
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 83/195 (42%), Gaps = 35/195 (17%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A AFA+ G+ +TG+ L H IL L S +A +V C
Sbjct: 45 RARAFAEPLLIGETLETGENTLAHADAVAAILKNLGGSETMQAAAYLVY---------TC 95
Query: 166 ESLGSIEE----EFGDEVAKLVAGVSRLSYINQLLRRHRRI-------------NVNQGT 208
E L EE FG A L ++L + QL R ++ NV +
Sbjct: 96 EHLNKPEEVIGKAFGSNFAALAVETTKLMRV-QLQAREAQVAGLQVDDAATQTENVRKML 154
Query: 209 LGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 260
L LA RL +R A + A+A+E L ++ LA+RLG+W +K ELE
Sbjct: 155 LAFSRDLRVVMLRLASRLQTLRYYAAAKRPVSPAIAREALQVFAPLANRLGIWQMKWELE 214
Query: 261 DLCFAVLQPQIFRKM 275
DL F L+P +R++
Sbjct: 215 DLAFRFLEPDTYREV 229
>gi|421139488|ref|ZP_15599527.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas fluorescens
BBc6R8]
gi|404509404|gb|EKA23335.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas fluorescens
BBc6R8]
Length = 747
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVEADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQS 525
W YK T K S
Sbjct: 366 WRYKGTDVKAGS 377
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 21/145 (14%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D+++A +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLIAAVLYRGVREGHIQLPTVSQRFGTVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 210 GHEE-------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 250
G E LA+R +R + K VA+E I+ LA RL
Sbjct: 141 GQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAHRL 200
Query: 251 GLWALKAELEDLCFAVLQPQIFRKM 275
G+ +K ELEDL F L+P ++++
Sbjct: 201 GIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|395500048|ref|ZP_10431627.1| GTP pyrophosphokinase [Pseudomonas sp. PAMC 25886]
Length = 747
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVEADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQS 525
W YK T K S
Sbjct: 366 WRYKGTDVKAGS 377
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 21/145 (14%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D+++A +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLIAAVLYRGVREGHIQLPTVSQRFGTVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 210 GHEE-------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 250
G E LA+R +R + K VA+E I+ LA RL
Sbjct: 141 GQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAHRL 200
Query: 251 GLWALKAELEDLCFAVLQPQIFRKM 275
G+ +K ELEDL F L+P ++++
Sbjct: 201 GIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|325274863|ref|ZP_08140878.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas sp. TJI-51]
gi|324100011|gb|EGB97842.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas sp. TJI-51]
Length = 746
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 93/145 (64%), Gaps = 14/145 (9%)
Query: 381 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 440
L+ ELL + G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVKADISGRAKHIYSIWRKMKRKGLEFSQIYDVRAVRVLV------- 294
Query: 441 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 500
P I+ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEIRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 501 KMHEYAEHGLAAHWLYKETGNKLQS 525
MHE AE G+ AHW YK T K S
Sbjct: 353 GMHEEAELGVCAHWRYKGTDVKPSS 377
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 73/143 (51%), Gaps = 17/143 (11%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------------- 193
D++VA +++ V + +L + + FG V+KL+ GV R++ I+
Sbjct: 83 DSLVAAVIYRSVREGKVTLAEVSQRFGPVVSKLIDGVLRMAAISASLSPRQSLVLGSQAQ 142
Query: 194 -QLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+ LR+ V+ + +LA+R +R + A K VA+E I+ LA RLG+
Sbjct: 143 VENLRKMLVAMVDDVRVALIKLAERTCAIRAVKAADDEKRLRVAREVFDIYAPLAHRLGI 202
Query: 253 WALKAELEDLCFAVLQPQIFRKM 275
+K ELEDL F L+P+ ++++
Sbjct: 203 GHIKWELEDLSFRYLEPEQYKQI 225
>gi|421155567|ref|ZP_15615043.1| GTP pyrophosphokinase [Pseudomonas aeruginosa ATCC 14886]
gi|404520448|gb|EKA31121.1| GTP pyrophosphokinase [Pseudomonas aeruginosa ATCC 14886]
Length = 747
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ LS R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVQADLSGRAKHIYSIWRKMQRKGLDFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQS 525
W YK T K S
Sbjct: 366 WRYKGTDVKASS 377
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 72/143 (50%), Gaps = 17/143 (11%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLR-RHRRINVNQGT 208
+++VA +++ V + +L ++ + FG VAKL+ GV R++ I+ L RH + Q
Sbjct: 83 ESLVAAVIYRGVREGKITLEAVNKHFGPVVAKLIEGVLRMAAISASLNPRHSMVLGTQAQ 142
Query: 209 LGHE----------------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+ + +LA+R +R + K VA+E I+ LA RLG+
Sbjct: 143 VENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADEEKRHRVAREVFDIYAPLAHRLGI 202
Query: 253 WALKAELEDLCFAVLQPQIFRKM 275
+K ELEDL F L+P ++++
Sbjct: 203 GHIKWELEDLSFRYLEPDQYKQI 225
>gi|330826152|ref|YP_004389455.1| (p)ppGpp synthetase I SpoT/RelA [Alicycliphilus denitrificans K601]
gi|329311524|gb|AEB85939.1| (p)ppGpp synthetase I, SpoT/RelA [Alicycliphilus denitrificans
K601]
Length = 748
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 86/128 (67%), Gaps = 9/128 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+ ++S R K +YSI KMR K + +V+D RALRV+V P+++ CY+ L
Sbjct: 260 ISASVSGRPKHIYSIVKKMRGKSLDFDQVFDIRALRVIV---------PSVKDCYAALSW 310
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH + I+ EFDDYI PKP+GYQSLHT V+ G A+E+QIRTQ MH++AEHG+AAHW
Sbjct: 311 VHSQFTSIEAEFDDYIARPKPNGYQSLHTVVRDEAGRAIEIQIRTQAMHDHAEHGVAAHW 370
Query: 515 LYKETGNK 522
YKE G K
Sbjct: 371 AYKEAGTK 378
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 83/195 (42%), Gaps = 35/195 (17%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A AFA+ G+ +TG+ L H IL L S +A +V C
Sbjct: 45 RARAFAEPLLIGETLETGENTLAHADAVAAILKNLGGSETMQAAAYLVY---------TC 95
Query: 166 ESLGSIEE----EFGDEVAKLVAGVSRLSYINQLLRRHRRI-------------NVNQGT 208
E L EE FG A L ++L + QL R ++ NV +
Sbjct: 96 EHLNKPEEVIGKAFGSNFAALAVETTKLMRV-QLQAREAQVAGLQVDDAATQTENVRKML 154
Query: 209 LGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 260
L LA RL +R A + A+A+E L ++ LA+RLG+W +K ELE
Sbjct: 155 LAFSRDLRVVMLRLASRLQTLRYYAAAKRPVSPAIAREALQVFAPLANRLGIWQMKWELE 214
Query: 261 DLCFAVLQPQIFRKM 275
DL F L+P +R++
Sbjct: 215 DLAFRFLEPDTYREV 229
>gi|395798927|ref|ZP_10478210.1| GTP pyrophosphokinase [Pseudomonas sp. Ag1]
gi|395337161|gb|EJF69019.1| GTP pyrophosphokinase [Pseudomonas sp. Ag1]
Length = 747
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVEADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQS 525
W YK T K S
Sbjct: 366 WRYKGTDVKAGS 377
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 21/145 (14%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D+++A +L+ V + L +I + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLIAAVLYRGVREGHIQLPTISQRFGTVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 210 GHEE-------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 250
G E LA+R +R + K VA+E I+ LA RL
Sbjct: 141 GQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAHRL 200
Query: 251 GLWALKAELEDLCFAVLQPQIFRKM 275
G+ +K ELEDL F L+P ++++
Sbjct: 201 GIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|431801220|ref|YP_007228123.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas putida HB3267]
gi|430791985|gb|AGA72180.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas putida HB3267]
Length = 746
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 98/154 (63%), Gaps = 16/154 (10%)
Query: 381 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 440
L+ ELL + G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVKADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 441 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 500
P I+ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEIRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 501 KMHEYAEHGLAAHWLYKETGNKLQSISSMDESDI 534
MHE AE G+ AHW YK G ++S S+ E I
Sbjct: 353 GMHEEAELGVCAHWRYK--GTDVKSSSNHYEEKI 384
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 72/143 (50%), Gaps = 17/143 (11%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------------- 193
D++VA +++ V + +L + + FG V+KL+ GV R++ I+
Sbjct: 83 DSLVAAVIYRSVREGKVTLAEVSQRFGPVVSKLIDGVLRMAAISASLSPRQSLVLGSQAQ 142
Query: 194 -QLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+ LR+ V+ + +LA+R +R + A K VA+E I+ LA RLG+
Sbjct: 143 VENLRKMLVAMVDDVRVALIKLAERTCAIRAVKAADDEKRLRVAREVFDIYAPLAHRLGI 202
Query: 253 WALKAELEDLCFAVLQPQIFRKM 275
+K ELEDL F L+P ++++
Sbjct: 203 GHIKWELEDLSFRYLEPDQYKQI 225
>gi|395648544|ref|ZP_10436394.1| GTP pyrophosphokinase [Pseudomonas extremaustralis 14-3 substr.
14-3b]
Length = 747
Score = 139 bits (350), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P I+ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEIRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQS 525
W YK T K S
Sbjct: 366 WRYKGTDVKAGS 377
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 26/195 (13%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D+++A +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLIAAVLYRGVREGHIPLATVGQRFGSVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 210 GHEE-------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 250
G E LA+R +R + K VA+E I+ LA RL
Sbjct: 141 GQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAHRL 200
Query: 251 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTAS 310
G+ +K ELEDL F L+P +++ +A++ R R+ R IT ++ + +
Sbjct: 201 GIGHIKWELEDLSFRYLEPDQYKQ----IATLLHER-RLDRERFITDVMGQLRAELQATG 255
Query: 311 DDESFTTFDEHVLSM 325
D + +H+ S+
Sbjct: 256 VDADISGRAKHIYSI 270
>gi|312795968|ref|YP_004028890.1| GTP pyrophosphokinase / Guanosine-3',5'-bis(Diphosphate)
3'-pyrophosphohydrolase [Burkholderia rhizoxinica HKI
454]
gi|312167743|emb|CBW74746.1| GTP pyrophosphokinase (EC 2.7.6.5) /
Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase
(EC 3.1.7.2) [Burkholderia rhizoxinica HKI 454]
Length = 741
Score = 139 bits (350), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 64/128 (50%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
++ +S R K +YSI+ KMR K + ++ D RA RV+V P ++ CY++L I
Sbjct: 238 IDAEVSGRPKHIYSIWRKMRGKKLEFSELNDVRAFRVIV---------PDVKDCYTVLGI 288
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH +W P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRT MH +AE+G+AAHW
Sbjct: 289 VHNIWQPVPREFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTHDMHRFAEYGIAAHW 348
Query: 515 LYKETGNK 522
YKE G +
Sbjct: 349 RYKEAGTR 356
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 88/200 (44%), Gaps = 42/200 (21%)
Query: 107 AIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAML---IPSSGKRAVDTVVAGILHDVVDD 163
A+AF + G +G+ + H T +I+ L PSS VA L V+
Sbjct: 19 ALAFVREHASGVRLGSGEMLVEHAQGTAQIVNTLNVDPPSS--------VAAALFPVIPY 70
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQL--------------LRRHRRINVN---Q 206
E + E FG++V +LV V +L + + + HRR V +
Sbjct: 71 LSEPERLLGERFGEDVLQLVTDVRKLLRLGVIGIQATTPDSDKGRDAQAHRRAQVEALRK 130
Query: 207 GTLGHEE--------LADRLHNMRTIYA---LPPAKARAVAQETLLIWCSLASRLGLWAL 255
+ + LA RL +R A PPA+ + +ETL I+ LA+RLG+W L
Sbjct: 131 MLMAFAQDIRVVLIRLASRLQTLRFYAAHKLAPPAE---LPRETLEIYAPLANRLGIWQL 187
Query: 256 KAELEDLCFAVLQPQIFRKM 275
K ELEDL F +P ++++
Sbjct: 188 KWELEDLAFRFEEPATYKRI 207
>gi|26988388|ref|NP_743813.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas putida KT2440]
gi|24983142|gb|AAN67277.1|AE016354_4 GTP pyrophosphokinase [Pseudomonas putida KT2440]
Length = 746
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 93/145 (64%), Gaps = 14/145 (9%)
Query: 381 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 440
L+ ELL + G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVKADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 441 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 500
P I+ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEIRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 501 KMHEYAEHGLAAHWLYKETGNKLQS 525
MHE AE G+ AHW YK T K S
Sbjct: 353 GMHEEAELGVCAHWRYKGTDVKPSS 377
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 72/143 (50%), Gaps = 17/143 (11%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------------- 193
D++VA +++ V + +L + + FG V+KL+ GV R++ I+
Sbjct: 83 DSLVAAVIYRSVREGKVTLAEVSQRFGPVVSKLIDGVLRMAAISASLSPRQSLVLGSQAQ 142
Query: 194 -QLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+ LR+ V+ + +LA+R +R + + K VA+E I+ LA RLG+
Sbjct: 143 VENLRKMLVAMVDDVRVALIKLAERTCAIRAVKSADDEKRLRVAREVFDIYAPLAHRLGI 202
Query: 253 WALKAELEDLCFAVLQPQIFRKM 275
+K ELEDL F L+P ++++
Sbjct: 203 GHIKWELEDLSFRYLEPDQYKQI 225
>gi|451936564|ref|YP_007460418.1| GTP pyrophosphokinase [Candidatus Kinetoplastibacterium oncopeltii
TCC290E]
gi|451777487|gb|AGF48462.1| GTP pyrophosphokinase [Candidatus Kinetoplastibacterium oncopeltii
TCC290E]
Length = 279
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 86/128 (67%), Gaps = 9/128 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ ++ RLK +YSI++KMR K++ K+YD A+R+VV D I+ CY +LD
Sbjct: 155 GIKSEINGRLKHIYSIWNKMRIKNIDFAKLYDLSAVRIVVDD---------IKTCYIVLD 205
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
I+H+LW I EFDDYI PK +GYQSLHT V D +E+QIRT MH +AEHGLAAH
Sbjct: 206 IIHKLWNHIPEEFDDYISKPKANGYQSLHTVVIDKDNYLIEIQIRTYNMHNFAEHGLAAH 265
Query: 514 WLYKETGN 521
W YK+ N
Sbjct: 266 WYYKKFRN 273
>gi|381158677|ref|ZP_09867910.1| (p)ppGpp synthetase, RelA/SpoT family [Thiorhodovibrio sp. 970]
gi|380880035|gb|EIC22126.1| (p)ppGpp synthetase, RelA/SpoT family [Thiorhodovibrio sp. 970]
Length = 750
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 69/127 (54%), Positives = 86/127 (67%), Gaps = 9/127 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+E +S R K +YSI+ KM+RK V I +++D RALRV+V D I CY+ L
Sbjct: 249 GIEAQISGRPKHIYSIWRKMQRKRVDIEQIFDLRALRVIVAD---------IPACYAALG 299
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW I EFDDYI PK + Y+SLHTAV GP+ LEVQIRTQ+MHE+AE G+AAH
Sbjct: 300 VVHGLWKHIPREFDDYIATPKGNLYRSLHTAVIGPEDKPLEVQIRTQEMHEHAELGVAAH 359
Query: 514 WLYKETG 520
W YKE
Sbjct: 360 WAYKEAA 366
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 20/169 (11%)
Query: 122 TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAK 181
TG+ H + T IL L + DT+ A +L+ + + + E FG +A+
Sbjct: 56 TGESEARHRLATADILFNL-----RMDADTLCAALLNGCLGREQVTEDRLAERFGPGIAR 110
Query: 182 LVAGVSRLSYINQLLR-------RHRRINVNQGTLGHEE--------LADRLHNMRTIYA 226
+VA + R+ + + R N+ + LG E LA+RL MR
Sbjct: 111 MVADLGRIGALTNVARIIAEKDQHEHEENLRRLLLGIAEDVRVVLVVLAERLQLMRAAKL 170
Query: 227 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
L PA+ A+A++T ++ LA+RLG+W +K ELEDL P+ ++++
Sbjct: 171 LEPARQTALAEDTERVYAPLANRLGVWQIKWELEDLALRYRHPKDYKRV 219
>gi|270160131|ref|ZP_06188787.1| stringent stress response protein RelA [Legionella longbeachae
D-4968]
gi|289165092|ref|YP_003455230.1| GTP pyrophosphokinase [Legionella longbeachae NSW150]
gi|269988470|gb|EEZ94725.1| stringent stress response protein RelA [Legionella longbeachae
D-4968]
gi|288858265|emb|CBJ12133.1| GTP pyrophosphokinase [Legionella longbeachae NSW150]
Length = 734
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 68/121 (56%), Positives = 84/121 (69%), Gaps = 9/121 (7%)
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K ++SI+ KM RK+V + ++YDA A+RV+V K P CY +L +VH LW
Sbjct: 257 RSKHIHSIYKKMTRKNVSLDEIYDATAVRVLVDTK------PQ---CYEVLGMVHTLWKQ 307
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
I EFDDYI+NPK +GYQSLHTAVQGP+G EVQIRT MH+ AE G+AAHW YKE G
Sbjct: 308 ISAEFDDYIINPKANGYQSLHTAVQGPEGRVFEVQIRTFHMHDLAEMGVAAHWKYKEGGG 367
Query: 522 K 522
K
Sbjct: 368 K 368
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 96/202 (47%), Gaps = 21/202 (10%)
Query: 95 GYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVA 154
GY + N E ++ A ++ A +TG L + +LA L +T+ A
Sbjct: 29 GY-LDNLELIRAACTLSQLAGQEHATETGQSCLQQGLSMADLLADLEVDQ-----ETLAA 82
Query: 155 GILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSY------INQLLRRHRRI-NVNQG 207
I+ + V A S+ + E+ G +AKLV G+ R+S +N+ + ++I N+ +
Sbjct: 83 AIIFENVHYADLSVDDVAEQLGPNIAKLVKGIERMSAMHSFQALNKYPQNKQQIDNIRKM 142
Query: 208 TLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAEL 259
L + LA+RL +RT L + +A E + I+ LA+RLG+ A+K E+
Sbjct: 143 LLAMVDDVRAVLIKLAERLCVLRTASHLSEELRKQLATEAMEIYAPLANRLGIGAIKWEM 202
Query: 260 EDLCFAVLQPQIFRKMRADLAS 281
EDL F L P ++ + L +
Sbjct: 203 EDLAFRYLHPDDYKAIAKGLKA 224
>gi|430761273|ref|YP_007217130.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Thioalkalivibrio
nitratireducens DSM 14787]
gi|430010897|gb|AGA33649.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Thioalkalivibrio
nitratireducens DSM 14787]
Length = 724
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 98/158 (62%), Gaps = 12/158 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K +YSI+ KM++K + + ++ D RA RV+V D + CY++L
Sbjct: 234 GIQARVYGRPKHIYSIWRKMQKKQLALEELTDLRATRVIVDD---------LSACYTVLG 284
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH W + EFDDYI NPK +GYQSLHTAV GP+G +EVQIRT+ MHE+AE G+AAH
Sbjct: 285 IVHNQWPHLPREFDDYIANPKDNGYQSLHTAVVGPEGKVVEVQIRTRAMHEFAELGVAAH 344
Query: 514 WLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLD 551
W YKE G + +++ S L D DD N L+
Sbjct: 345 WRYKEGGREDLALARAINS---LRQLLESDGDDQNLLE 379
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYIN-----------QLLRRHRRINVNQGTLGHEELADRLH 219
+ ++FG+ VA+L VS L + LRR V+ + A RL
Sbjct: 89 MSQQFGEVVARLAENVSELVRRRFEAPTGRPEQAERLRRMLLAMVDDVRAVLIKFAFRLQ 148
Query: 220 NMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 279
N+R + +AQETL + LA+RLG+ +LK E+EDL +L+P+ +R + L
Sbjct: 149 NLRLAVKQMEPGTKLLAQETLDVIAPLANRLGIGSLKWEMEDLSLRILEPEAYRAIANGL 208
Query: 280 ASMWSPRNRVGYSRRITTIVSS 301
+ + R R Y T + S
Sbjct: 209 DA--NRRAREAYVETFTRTLES 228
>gi|310778489|ref|YP_003966822.1| (p)ppGpp synthetase I SpoT/RelA [Ilyobacter polytropus DSM 2926]
gi|309747812|gb|ADO82474.1| (p)ppGpp synthetase I, SpoT/RelA [Ilyobacter polytropus DSM 2926]
Length = 718
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 112/189 (59%), Gaps = 12/189 (6%)
Query: 107 AIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACE 166
A FAK H GQFRK+GD Y+ H I +IL + K DT+VAGILHD+V+D
Sbjct: 26 AYEFAKECHVGQFRKSGDEYIIHPIEVSKILINM-----KMDTDTIVAGILHDIVEDTLI 80
Query: 167 SLGSIEEEFGDEVAKLVAGVSRLSYINQ-LLRRHRRINVNQGTLGHE------ELADRLH 219
++ IE FG+ VAKLV GV++LS + + ++H I + + +LADRLH
Sbjct: 81 TVSDIEYNFGNSVAKLVDGVTKLSVLPKGTKKQHENIRKMIVAMAQDIRVVIIKLADRLH 140
Query: 220 NMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 279
NMRT+ +P K +++ETL I+ LA RLG+ +K ELEDL L+P+I+R++ +
Sbjct: 141 NMRTLKYMPAHKQERISRETLEIFAPLAHRLGMAMIKCELEDLSLYYLEPEIYRELVKLI 200
Query: 280 ASMWSPRNR 288
S + R +
Sbjct: 201 NSKKAEREK 209
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 86/145 (59%), Gaps = 14/145 (9%)
Query: 376 ACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGD 435
A ++ +EK LL + I G +S R K YSI+ KM K ++YD ALR++V
Sbjct: 213 ATKKEIEKFLL--ENNIKG---EVSGRPKHFYSIYKKMYEKGKEFDEIYDLIALRIIVET 267
Query: 436 KNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEV 495
+ CY++L ++H + P+ G F DYI PK +GYQS+HT + GP G +EV
Sbjct: 268 EGE---------CYNVLGVLHGNYKPVPGRFKDYIAVPKSNGYQSIHTTIVGPQGKFIEV 318
Query: 496 QIRTQKMHEYAEHGLAAHWLYKETG 520
QIRT++MH AE G+AAHW YKE G
Sbjct: 319 QIRTEEMHGIAEEGVAAHWSYKERG 343
>gi|451812326|ref|YP_007448780.1| GTP pyrophosphokinase [Candidatus Kinetoplastibacterium galatii
TCC219]
gi|451778228|gb|AGF49176.1| GTP pyrophosphokinase [Candidatus Kinetoplastibacterium galatii
TCC219]
Length = 330
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 70/147 (47%), Positives = 92/147 (62%), Gaps = 11/147 (7%)
Query: 375 VACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVG 434
+ E L K I Y G++ +S RLK +YSI++KM K++ ++YD ALRVVV
Sbjct: 187 IFIESTLSKIKSILNRY--GIKAEISGRLKHIYSIWNKMCFKNIDFSRLYDLSALRVVVD 244
Query: 435 DKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALE 494
D ++ CY +LDIVH+LW I EFDDYI PKP+GYQSLHT V D +E
Sbjct: 245 D---------VKTCYMVLDIVHKLWDHIPEEFDDYISRPKPNGYQSLHTVVIDKDNYLIE 295
Query: 495 VQIRTQKMHEYAEHGLAAHWLYKETGN 521
+QIRT MH +AE+GLA+HW YK+ N
Sbjct: 296 IQIRTCDMHNFAEYGLASHWFYKKFRN 322
>gi|77460438|ref|YP_349945.1| (p)ppGpp synthetase SpoT/RelA [Pseudomonas fluorescens Pf0-1]
gi|398979244|ref|ZP_10688299.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM25]
gi|77384441|gb|ABA75954.1| GTP pyrophosphokinase [Pseudomonas fluorescens Pf0-1]
gi|398135907|gb|EJM25009.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM25]
Length = 747
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVEADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQSISSMDESDI 534
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 21/145 (14%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLVAAVLYRGVREGQIELAAVSQRFGPVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 210 GHEE-------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 250
G E LA+R +R + K VA+E I+ LA RL
Sbjct: 141 GQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAHRL 200
Query: 251 GLWALKAELEDLCFAVLQPQIFRKM 275
G+ +K ELEDL F L+P ++++
Sbjct: 201 GIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|78485556|ref|YP_391481.1| (p)ppGpp synthetase SpoT/RelA [Thiomicrospira crunogena XCL-2]
gi|78363842|gb|ABB41807.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Thiomicrospira crunogena XCL-2]
Length = 716
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 114/391 (29%), Positives = 179/391 (45%), Gaps = 91/391 (23%)
Query: 136 ILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL 195
I A +I S K DT++A ++ D+ + + I +EFGD +A++V GV RL++ +
Sbjct: 43 IDAAIILSDLKLDRDTLIATLISDMGLEQRYPIEKISDEFGDHIAQMVTGVRRLNHFKEF 102
Query: 196 LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLG-LWA 254
+ T +E +RL M A+ + ++ LA R+ L
Sbjct: 103 ---------HPATTSNEVQTERLRQM----------LLAMTSDIRIMIVKLAFRVARLRT 143
Query: 255 LKAELEDLCFAVLQPQIFRKMRADLASM-WSP-RNRVGYSRRITTIVSSPPLDERTASDD 312
LK E P+ R+ A M ++P NR+G
Sbjct: 144 LKNE----------PEAIRQQIASETQMIFAPLANRLG---------------------- 171
Query: 313 ESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALT 372
+ +K LE LS R + ++A+ +A++ + GI
Sbjct: 172 ---------IAQLKWELED------LSFRFLQPDTYKEVARQLDAKRHGRETYIQGI--- 213
Query: 373 SLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 432
+ + EE L+ G+E +S R K +YSI+ KM RK+V I +++D RA+R+
Sbjct: 214 -IQSLEEMLKDS---------GIEHHISGRPKHIYSIWKKMTRKNVPIDELFDLRAVRIY 263
Query: 433 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 492
V +Q CY +L ++H W I EFDDYI NPK +GYQS+HT + G +
Sbjct: 264 VD---------TVQQCYEVLGMIHSRWPYIKDEFDDYIANPKENGYQSIHTVIIGAENKT 314
Query: 493 LEVQIRTQKMHEYAEHGLAAHWLYKETGNKL 523
+E+QIRT +MH +AE G+AAHW YKE G +
Sbjct: 315 VEIQIRTHEMHRHAEFGVAAHWRYKEGGKSI 345
>gi|148549268|ref|YP_001269370.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas putida F1]
gi|421522586|ref|ZP_15969227.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas putida LS46]
gi|148513326|gb|ABQ80186.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas putida F1]
gi|402753686|gb|EJX14179.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas putida LS46]
Length = 746
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 92/145 (63%), Gaps = 14/145 (9%)
Query: 381 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 440
L+ ELL + G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVNADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 441 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 500
P I+ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEIRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 501 KMHEYAEHGLAAHWLYKETGNKLQS 525
MHE AE G+ AHW YK T K S
Sbjct: 353 GMHEEAELGVCAHWRYKGTDVKPSS 377
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 72/143 (50%), Gaps = 17/143 (11%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------------- 193
D++VA +++ V + +L + + FG V+KL+ GV R++ I+
Sbjct: 83 DSLVAAVIYRSVREGKVTLAEVSQRFGPVVSKLIDGVLRMAAISASLSPRQSLVLGSQAQ 142
Query: 194 -QLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+ LR+ V+ + +LA+R +R + + K VA+E I+ LA RLG+
Sbjct: 143 VENLRKMLVAMVDDVRVALIKLAERTCAIRAVKSADDEKRLRVAREVFDIYAPLAHRLGI 202
Query: 253 WALKAELEDLCFAVLQPQIFRKM 275
+K ELEDL F L+P ++++
Sbjct: 203 GHIKWELEDLSFRYLEPDQYKQI 225
>gi|422658161|ref|ZP_16720597.1| GTP pyrophosphokinase, partial [Pseudomonas syringae pv. lachrymans
str. M302278]
gi|331016788|gb|EGH96844.1| GTP pyrophosphokinase, partial [Pseudomonas syringae pv. lachrymans
str. M302278]
Length = 599
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQSISSMDESDI 534
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSSSNHYEEKI 384
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 91/200 (45%), Gaps = 27/200 (13%)
Query: 98 IFNDEQVQKAIAFAKRAH-----HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
+ + E +++A FA++A H G + ILA L K D++
Sbjct: 31 VLDREVMKQACEFARQAEQNDKAHKNHWAEGTSSFQTGLEIAEILADL-----KLDQDSL 85
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN-----------------QL 195
VA +++ V + L +E+ FG VAKL+ GV R++ I+ +
Sbjct: 86 VAAVMYRGVREGVIPLPDVEQRFGATVAKLIDGVLRMAAISASLSPRQSLVLGIQAQVEN 145
Query: 196 LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 255
LR+ V+ + +LA+R +R + K VA+E I+ LA RLG+ +
Sbjct: 146 LRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRLGIGHI 205
Query: 256 KAELEDLCFAVLQPQIFRKM 275
K ELEDL F L+P ++++
Sbjct: 206 KWELEDLSFRYLEPDQYKQI 225
>gi|386013472|ref|YP_005931749.1| GTP pyrophosphokinase [Pseudomonas putida BIRD-1]
gi|313500178|gb|ADR61544.1| GTP pyrophosphokinase [Pseudomonas putida BIRD-1]
Length = 741
Score = 138 bits (348), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 92/145 (63%), Gaps = 14/145 (9%)
Query: 381 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 440
L+ ELL + G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 242 LQNELLAT-----GVNADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 289
Query: 441 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 500
P I+ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 290 --PEIRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 347
Query: 501 KMHEYAEHGLAAHWLYKETGNKLQS 525
MHE AE G+ AHW YK T K S
Sbjct: 348 GMHEEAELGVCAHWRYKGTDVKPSS 372
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 72/143 (50%), Gaps = 17/143 (11%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------------- 193
D++VA +++ V + +L + + FG V+KL+ GV R++ I+
Sbjct: 78 DSLVAAVIYRSVREGKVTLAEVSQRFGPVVSKLIDGVLRMAAISASLSPRQSLVLGSQAQ 137
Query: 194 -QLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+ LR+ V+ + +LA+R +R + + K VA+E I+ LA RLG+
Sbjct: 138 VENLRKMLVAMVDDVRVALIKLAERTCAIRAVKSADDEKRLRVAREVFDIYAPLAHRLGI 197
Query: 253 WALKAELEDLCFAVLQPQIFRKM 275
+K ELEDL F L+P ++++
Sbjct: 198 GHIKWELEDLSFRYLEPDQYKQI 220
>gi|395444967|ref|YP_006385220.1| ppGpp synthetase I SpoT/RelA [Pseudomonas putida ND6]
gi|397696412|ref|YP_006534295.1| GTP pyrophosphokinase [Pseudomonas putida DOT-T1E]
gi|388558964|gb|AFK68105.1| ppGpp synthetase I SpoT/RelA [Pseudomonas putida ND6]
gi|397333142|gb|AFO49501.1| GTP pyrophosphokinase [Pseudomonas putida DOT-T1E]
Length = 741
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 92/145 (63%), Gaps = 14/145 (9%)
Query: 381 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 440
L+ ELL + G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 242 LQNELLAT-----GVNADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 289
Query: 441 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 500
P I+ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 290 --PEIRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 347
Query: 501 KMHEYAEHGLAAHWLYKETGNKLQS 525
MHE AE G+ AHW YK T K S
Sbjct: 348 GMHEEAELGVCAHWRYKGTDVKPSS 372
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 72/143 (50%), Gaps = 17/143 (11%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------------- 193
D++VA +++ V + +L + + FG V+KL+ GV R++ I+
Sbjct: 78 DSLVAAVIYRSVREGKVTLAEVSQRFGPVVSKLIDGVLRMAAISASLSPRQSLVLGSQAQ 137
Query: 194 -QLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+ LR+ V+ + +LA+R +R + + K VA+E I+ LA RLG+
Sbjct: 138 VENLRKMLVAMVDDVRVALIKLAERTCAIRAVKSADDEKRLRVAREVFDIYAPLAHRLGI 197
Query: 253 WALKAELEDLCFAVLQPQIFRKM 275
+K ELEDL F L+P ++++
Sbjct: 198 GHIKWELEDLSFRYLEPDQYKQI 220
>gi|374702789|ref|ZP_09709659.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas sp. S9]
Length = 748
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 86/129 (66%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIEADISGRAKHIYSIWRKMQRKGLQFSQIYDVRAVRVLV---------PQMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVLGPEGKVLEVQIRTAAMHEEAELGVCAH 365
Query: 514 WLYKETGNK 522
W YK T K
Sbjct: 366 WRYKGTDVK 374
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 72/143 (50%), Gaps = 17/143 (11%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------------- 193
D++VA +L+ V + L ++ + FG VAKL+ GV R++ I+
Sbjct: 83 DSLVAAVLYRGVREGTVELAAVHQRFGPVVAKLIEGVLRMAAISASMNPRDSMVLGSQAQ 142
Query: 194 -QLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
LR+ V+ + +LA+R +R + K + VA+E I+ LA RLG+
Sbjct: 143 VDNLRKMLVAMVDDVRVALIKLAERTCAIRAVKLADDEKRQRVAREVFDIYAPLAHRLGI 202
Query: 253 WALKAELEDLCFAVLQPQIFRKM 275
+K ELEDL F L+P+ ++++
Sbjct: 203 GHIKWELEDLSFRYLEPEQYKQI 225
>gi|337279372|ref|YP_004618844.1| GTP pyrophosphokinase [Ramlibacter tataouinensis TTB310]
gi|334730449|gb|AEG92825.1| candidate GTP pyrophosphokinase (GTP pyrophosphokinase)
[Ramlibacter tataouinensis TTB310]
Length = 733
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 94/155 (60%), Gaps = 15/155 (9%)
Query: 380 ALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGT 439
+LE EL ++ G+ + R K +YSI KMR K + V+D RALRV+V
Sbjct: 239 SLEAELRVN-----GIPAQVHGRPKHIYSIVKKMRGKSLDFEHVFDVRALRVIV------ 287
Query: 440 LHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRT 499
P ++ CY+ L VH + PI EFDDYI PKP+GYQSLHT V+ G +E+Q+RT
Sbjct: 288 ---PEVRDCYAALAWVHERFEPIASEFDDYIARPKPNGYQSLHTVVRDEAGRPIEIQVRT 344
Query: 500 QKMHEYAEHGLAAHWLYKETGNK-LQSISSMDESD 533
Q MHE+AEHG+AAHW YKE G K +S+ E D
Sbjct: 345 QAMHEHAEHGVAAHWAYKEAGAKGYAGVSASSEYD 379
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 39/62 (62%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA RL +R A R+VA+E L ++ LA+RLG+W LK E+EDL F L+P ++
Sbjct: 157 LASRLQTLRWHAAAKTLAPRSVAREALQVFAPLANRLGIWQLKWEMEDLAFRFLEPATYK 216
Query: 274 KM 275
++
Sbjct: 217 QV 218
>gi|344941876|ref|ZP_08781164.1| RelA/SpoT family protein [Methylobacter tundripaludum SV96]
gi|344263068|gb|EGW23339.1| RelA/SpoT family protein [Methylobacter tundripaludum SV96]
Length = 710
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/206 (40%), Positives = 112/206 (54%), Gaps = 20/206 (9%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ + R K +YSI+ KMRRK + I ++YD A+RV+V + + CY+ L
Sbjct: 227 GISAEIYGRPKHIYSIWKKMRRKQLDIDELYDLLAVRVIVDN---------LTACYATLG 277
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW I EFDDYI NPK +GYQSLHT + P+G+ +EVQIRTQ+MH++AE G+AAH
Sbjct: 278 MVHSLWQTIPKEFDDYIANPKENGYQSLHTVIIDPEGNRIEVQIRTQQMHDFAELGVAAH 337
Query: 514 WLYKETGNKLQSISS--------MDESDIEASSSLSKDTDDHNPLDTDLFQK--YSSLKM 563
W YKE G +I +DE+ E S D ++LF Y
Sbjct: 338 WSYKEGGKHDAAIEKNIASLRKLLDETSPERSRKEGSDEALSENFRSELFNDRVYVLTPA 397
Query: 564 GHPVIRVEGSNLLA-AVIIRVEKGGR 588
G + V+GS L A I E G R
Sbjct: 398 GKLIDLVKGSTPLDFAYAIHTEVGHR 423
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 13/145 (8%)
Query: 149 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN-------------QL 195
+ T++A IL D +I+E+FG+ VA LV V+ L+ + +
Sbjct: 58 LKTILAAILSDPRLAHLNPKPNIKEQFGETVATLVNDVNWLNKLTVYSLEMTDQPSQTET 117
Query: 196 LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 255
LRR +LA RL ++ + R +AQETL I+ +A+R+G+ L
Sbjct: 118 LRRMLLSMTQDVRAVLIKLAYRLQRLKVLPRESYELRRFIAQETLDIYAPIANRMGIHQL 177
Query: 256 KAELEDLCFAVLQPQIFRKMRADLA 280
K ELED+ F L+PQ +R++ L
Sbjct: 178 KWELEDMAFRYLKPQSYRRIAKSLT 202
>gi|104780553|ref|YP_607051.1| GTP pyrophosphokinase RelA [Pseudomonas entomophila L48]
gi|95109540|emb|CAK14241.1| putative GTP pyrophosphokinase RelA [Pseudomonas entomophila L48]
Length = 746
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/145 (50%), Positives = 92/145 (63%), Gaps = 14/145 (9%)
Query: 381 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 440
L+ ELL + G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVNADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 441 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 500
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEVRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 501 KMHEYAEHGLAAHWLYKETGNKLQS 525
MHE AE G+ AHW YK T K S
Sbjct: 353 SMHEEAELGVCAHWRYKGTDVKPSS 377
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 72/143 (50%), Gaps = 17/143 (11%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------------- 193
D++VA +++ V + +L I + FG V+KL+ GV R++ I+
Sbjct: 83 DSLVAAVIYRSVREGKVTLAEIGQRFGPVVSKLIDGVLRMAAISASLSPRQSLVLGSQAQ 142
Query: 194 -QLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+ LR+ V+ + +LA+R +R + + K VA+E I+ LA RLG+
Sbjct: 143 VENLRKMLVAMVDDVRVALIKLAERTCAIRAVKSADDEKRLRVAREVFDIYAPLAHRLGI 202
Query: 253 WALKAELEDLCFAVLQPQIFRKM 275
+K ELEDL F L+P ++++
Sbjct: 203 GHIKWELEDLSFRYLEPDQYKQI 225
>gi|302132005|ref|ZP_07257995.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tomato NCPPB 1108]
Length = 747
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQSISSMDESDI 534
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSSSNHYEEKI 384
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 90/200 (45%), Gaps = 27/200 (13%)
Query: 98 IFNDEQVQKAIAFAKRAH-----HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
+ + E +++A FA++A H G + ILA L K D++
Sbjct: 31 VLDREVMKQACEFARQAEQNDKAHKNHWAEGTSSFQTGLEIAEILADL-----KLDQDSL 85
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN-----------------QL 195
VA ++ V + L +E+ FG VAKL+ GV R++ I+ +
Sbjct: 86 VAAGMYRGVREGVIPLPDVEQRFGATVAKLIDGVLRMAAISASLSPRQSLVLGSQAQVEN 145
Query: 196 LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 255
LR+ V+ + +LA+R +R + K VA+E I+ LA RLG+ +
Sbjct: 146 LRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRLGIGHI 205
Query: 256 KAELEDLCFAVLQPQIFRKM 275
K ELEDL F L+P ++++
Sbjct: 206 KWELEDLSFRYLEPDQYKQI 225
>gi|291612747|ref|YP_003522904.1| RelA/SpoT family protein [Sideroxydans lithotrophicus ES-1]
gi|291582859|gb|ADE10517.1| RelA/SpoT family protein [Sideroxydans lithotrophicus ES-1]
Length = 659
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/138 (49%), Positives = 92/138 (66%), Gaps = 12/138 (8%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ ++ R K +YSI +KM+RK++ ++YD RA+R++V I+ CY+ L
Sbjct: 254 GIKAEVTGRPKHIYSIINKMKRKNLDFDQLYDVRAVRILVD---------TIEQCYAALS 304
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW PI EFDDYI PKP+GY+SLHTAV GP +EVQIRTQ+MH +E G+AAH
Sbjct: 305 IVHELWTPIQKEFDDYIARPKPNGYKSLHTAVLGPRDLPVEVQIRTQQMHHDSELGVAAH 364
Query: 514 WLYKETGNKLQSISSMDE 531
W YKE +S S +DE
Sbjct: 365 WRYKENR---KSESGLDE 379
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 116/257 (45%), Gaps = 31/257 (12%)
Query: 107 AIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACE 166
A FA +HG TG P L H + + IL L +T+ A LH + D +
Sbjct: 41 ACEFAAPLYHGHSEITGTPLLQHALGSASILIGLHMDH-----ETIAATALHAIPDFLDD 95
Query: 167 SLGSIEEEFGDEVAKLVAGVSRLSYINQL--------------------LRRHRRINVNQ 206
+EE FG + +V G+SR+ ++ Q LR+ V
Sbjct: 96 WKSVLEERFGHNIPLMVDGISRMEHVRQFSEIRTAAADDKEAAAQQLEGLRQMLLAMVED 155
Query: 207 GTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAV 266
+ +LA+R +RT+ PP + + +AQET I+ LA+RLG+W +K ELEDL
Sbjct: 156 IRVVLIKLAERTQTLRTLPGAPPEQQKLIAQETQSIFAPLANRLGVWQIKWELEDLSTRY 215
Query: 267 LQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMK 326
L+P +++K +A + R R+ R I I+S + A T +H+ S+
Sbjct: 216 LEPGLYKK----IAKLLDER-RIDRERYIADIISHLQRELAQAGIKAEVTGRPKHIYSII 270
Query: 327 DLLE-AVVPFDILSDRR 342
+ ++ + FD L D R
Sbjct: 271 NKMKRKNLDFDQLYDVR 287
>gi|167032269|ref|YP_001667500.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas putida GB-1]
gi|166858757|gb|ABY97164.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas putida GB-1]
Length = 746
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 92/145 (63%), Gaps = 14/145 (9%)
Query: 381 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 440
L+ ELL + G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVNADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 441 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 500
P I+ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEIRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 501 KMHEYAEHGLAAHWLYKETGNKLQS 525
MHE AE G+ AHW YK T K S
Sbjct: 353 GMHEEAELGVCAHWRYKGTDVKPSS 377
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 72/143 (50%), Gaps = 17/143 (11%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------------- 193
D++VA +++ V + +L + + FG V+KL+ GV R++ I+
Sbjct: 83 DSLVAAVIYRSVREGKVTLAEVSQRFGPVVSKLIDGVLRMAAISASLSPRQSLVLGSQAQ 142
Query: 194 -QLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+ LR+ V+ + +LA+R +R + A K VA+E I+ LA RLG+
Sbjct: 143 VENLRKMLVAMVDDVRVALIKLAERTCAIRAVKAADDEKRLRVAREVFDIYAPLAHRLGI 202
Query: 253 WALKAELEDLCFAVLQPQIFRKM 275
+K ELEDL F L+P ++++
Sbjct: 203 GHIKWELEDLSFRYLEPDQYKQI 225
>gi|289677067|ref|ZP_06497957.1| RelA/SpoT protein, partial [Pseudomonas syringae pv. syringae FF5]
Length = 402
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNK 522
W YK T K
Sbjct: 366 WRYKGTDVK 374
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 91/200 (45%), Gaps = 27/200 (13%)
Query: 98 IFNDEQVQKAIAFAKRAH-----HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
+ + E ++KA FA+ A H G + ILA L K D++
Sbjct: 31 VLDREVMKKACEFAREAEQTDKAHKNHWAEGTSSFQTGLEIAEILADL-----KLDQDSL 85
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN-----------------QL 195
VA +++ V + +L +E+ FG VAKL+ GV R++ I+ +
Sbjct: 86 VAAVIYRGVREGLIALPEVEQRFGATVAKLIDGVLRMAAISASLSPRQSLVLGSQAQVEN 145
Query: 196 LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 255
LR+ V+ + +LA+R +R + K VA+E I+ LA RLG+ +
Sbjct: 146 LRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRLGIGHI 205
Query: 256 KAELEDLCFAVLQPQIFRKM 275
K ELEDL F L+P ++++
Sbjct: 206 KWELEDLSFRYLEPDQYKQI 225
>gi|422667889|ref|ZP_16727749.1| RelA/SpoT protein, partial [Pseudomonas syringae pv. aptata str.
DSM 50252]
gi|330980190|gb|EGH78361.1| RelA/SpoT protein [Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 386
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNK 522
W YK T K
Sbjct: 366 WRYKGTDVK 374
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 91/200 (45%), Gaps = 27/200 (13%)
Query: 98 IFNDEQVQKAIAFAKRAH-----HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
+ + E ++KA FA+ A H G + ILA L K D++
Sbjct: 31 VLDREVMKKACEFAREAEQTDKAHKNHWAEGTSSFQTGLEIAEILADL-----KLDQDSL 85
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN-----------------QL 195
VA +++ V + +L +E+ FG VAKL+ GV R++ I+ +
Sbjct: 86 VAAVIYRGVREGLIALPEVEQRFGATVAKLIDGVLRMAAISASLSPRQSLVLGSQAQVEN 145
Query: 196 LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 255
LR+ V+ + +LA+R +R + K VA+E I+ LA RLG+ +
Sbjct: 146 LRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRLGIGHI 205
Query: 256 KAELEDLCFAVLQPQIFRKM 275
K ELEDL F L+P ++++
Sbjct: 206 KWELEDLSFRYLEPDQYKQI 225
>gi|378952324|ref|YP_005209812.1| RelA protein [Pseudomonas fluorescens F113]
gi|359762338|gb|AEV64417.1| RelA [Pseudomonas fluorescens F113]
Length = 748
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVEADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQSISSMDESDI 534
W YK G ++S S+ E I
Sbjct: 366 WKYK--GTDVKSGSNHYEEKI 384
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 82/171 (47%), Gaps = 26/171 (15%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA +L+ V + L + + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLVAAVLYRGVREGQIQLPVVSQRFGTVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 210 GHEE-------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 250
G E LA+R +R + + K VA+E I+ LA RL
Sbjct: 141 GQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKSADDEKRNRVAREVFDIYAPLAHRL 200
Query: 251 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSS 301
G+ +K ELEDL F L+P +++ +A + R R+ R IT +++
Sbjct: 201 GIGHIKWELEDLSFRYLEPDQYKQ----IAKLLHER-RLDRERFITDVMTQ 246
>gi|213971907|ref|ZP_03400007.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tomato T1]
gi|301384477|ref|ZP_07232895.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tomato Max13]
gi|213923332|gb|EEB56927.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tomato T1]
Length = 747
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQSISSMDESDI 534
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSSSNHYEEKI 384
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 91/200 (45%), Gaps = 27/200 (13%)
Query: 98 IFNDEQVQKAIAFAKRAH-----HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
+ + E +++A FA++A H G + ILA L K D++
Sbjct: 31 VLDREVMKQACEFARQAEQNDKAHKNHWAEGTSSFQTGLEIAEILADL-----KLDQDSL 85
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN-----------------QL 195
VA +++ V + L +E+ FG VAKL+ GV R++ I+ +
Sbjct: 86 VAAVMYRGVREGVIPLPDVEQRFGATVAKLIDGVLRMAAISASLSPRQSLVLGSQAQVEN 145
Query: 196 LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 255
LR+ V+ + +LA+R +R + K VA+E I+ LA RLG+ +
Sbjct: 146 LRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRLGIGHI 205
Query: 256 KAELEDLCFAVLQPQIFRKM 275
K ELEDL F L+P ++++
Sbjct: 206 KWELEDLSFRYLEPDQYKQI 225
>gi|28868900|ref|NP_791519.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tomato str. DC3000]
gi|28852139|gb|AAO55214.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tomato str. DC3000]
Length = 744
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 252 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 302
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 303 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 362
Query: 514 WLYKETGNKLQSISSMDESDI 534
W YK G ++S S+ E I
Sbjct: 363 WRYK--GTDVKSSSNHYEEKI 381
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 91/200 (45%), Gaps = 27/200 (13%)
Query: 98 IFNDEQVQKAIAFAKRAH-----HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
+ + E +++A FA++A H G + ILA L K D++
Sbjct: 28 VLDREVMKQACEFARQAEQNDKAHKNHWAEGTSSFQTGLEIAEILADL-----KLDQDSL 82
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN-----------------QL 195
VA +++ V + L +E+ FG VAKL+ GV R++ I+ +
Sbjct: 83 VAAVMYRGVREGVIPLPDVEQRFGATVAKLIDGVLRMAAISASLSPRQSLVLGSQAQVEN 142
Query: 196 LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 255
LR+ V+ + +LA+R +R + K VA+E I+ LA RLG+ +
Sbjct: 143 LRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRLGIGHI 202
Query: 256 KAELEDLCFAVLQPQIFRKM 275
K ELEDL F L+P ++++
Sbjct: 203 KWELEDLSFRYLEPDQYKQI 222
>gi|330504040|ref|YP_004380909.1| (p)ppGpp synthetase I [Pseudomonas mendocina NK-01]
gi|328918326|gb|AEB59157.1| (p)ppGpp synthetase I [Pseudomonas mendocina NK-01]
Length = 747
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIKADISGRAKHIYSIWRKMQRKGLQFSQIYDVRAVRVLV---------PEVRDCYTTLG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVLGPEGKVLEVQIRTHSMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQSISSMDESDI 534
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 73/143 (51%), Gaps = 17/143 (11%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------------- 193
D++VA I++ V + +L ++ + FG VAKL+ GV R++ I+
Sbjct: 83 DSLVAAIIYRGVREGKITLAAVHQRFGPVVAKLIEGVLRMAAISASINPRESVVVGSQTQ 142
Query: 194 -QLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+ LR+ V+ + +LA+R +R + K + VA+E I+ LA RLG+
Sbjct: 143 VENLRKMLVAMVDDVRVALIKLAERTCAIRAVKEADEEKRQRVAREVFDIYAPLAHRLGI 202
Query: 253 WALKAELEDLCFAVLQPQIFRKM 275
+K ELEDL F L+P ++++
Sbjct: 203 GHIKWELEDLSFRYLEPDQYKQI 225
>gi|329894308|ref|ZP_08270178.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [gamma
proteobacterium IMCC3088]
gi|328923104|gb|EGG30427.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [gamma
proteobacterium IMCC3088]
Length = 739
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 93/137 (67%), Gaps = 11/137 (8%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K ++SI+ KM+RK +G +V+D RA+R++V P+++ CY+ L ++H L
Sbjct: 260 INGRAKHIFSIWKKMQRKGIGFSQVHDVRAIRILV---------PSVKDCYTTLGVIHGL 310
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W I EFDDYI NPKP+GY+SLHTAV GP+G LEVQ+RT +MH+ AE G+ AHW YK+
Sbjct: 311 WRTIPNEFDDYIANPKPNGYRSLHTAVIGPEGKVLEVQVRTNEMHDEAELGVCAHWRYKQ 370
Query: 519 TGNKLQSISSMDESDIE 535
+ S S+ E IE
Sbjct: 371 SDRA--SSGSVYEEKIE 385
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 98/224 (43%), Gaps = 21/224 (9%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
Y + E+V +A++ + A H D T + + LI K V + AG
Sbjct: 29 YSASDAERVSEALSCLQSASHRVGVDCNDWAQTSNLVVESLDIALILIELKVDVQALCAG 88
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYI------------------NQLLR 197
+L+ V + S+ S+ EFG V LV GV +++ + N LR
Sbjct: 89 LLYRAVREQRLSVESVRREFGQSVEALVVGVLKMADVADVQSFTAASVLGQPQSANDNLR 148
Query: 198 RHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKA 257
+ V+ + +LA+R +R + + R +A E ++ LA RLG+ LK
Sbjct: 149 QMLVAMVDDVRVALIKLAERTCAIRVVKNDEQRRER-LAAEVSGLYVPLAHRLGIGQLKW 207
Query: 258 ELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSS 301
ELEDL F QP +++++ L R+R Y RR++ V +
Sbjct: 208 ELEDLAFRYTQPSVYKRIAKLLDGKRVERDR--YIRRVSQTVDA 249
>gi|350561728|ref|ZP_08930566.1| (p)ppGpp synthetase I, SpoT/RelA [Thioalkalivibrio thiocyanoxidans
ARh 4]
gi|349780760|gb|EGZ35078.1| (p)ppGpp synthetase I, SpoT/RelA [Thioalkalivibrio thiocyanoxidans
ARh 4]
Length = 724
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 98/158 (62%), Gaps = 12/158 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K +YSI+ KM++K + + ++ D RA RV+V D + CY++L
Sbjct: 234 GVQARVYGRPKHIYSIWRKMQKKQLALEELTDLRATRVIVDD---------LSACYTVLG 284
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH W + EFDDYI NPK +GYQSLHTAV GP+G +EVQIRT+ MHE+AE G+AAH
Sbjct: 285 IVHNQWPHLPREFDDYIANPKDNGYQSLHTAVIGPEGKVVEVQIRTRAMHEFAELGVAAH 344
Query: 514 WLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLD 551
W YKE G + +++ S L D DD N L+
Sbjct: 345 WRYKEGGREDLALARAINS---LRQLLESDGDDQNLLE 379
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 11/117 (9%)
Query: 170 SIEEEFGDEVAKLVAGVSRLSYIN-----------QLLRRHRRINVNQGTLGHEELADRL 218
+ ++FG+ VA+L VS L + LRR V+ + A RL
Sbjct: 88 QMSQQFGEVVARLTENVSELVRRRFESPTGRPEQAERLRRMLLAMVDDVRALLIKFAFRL 147
Query: 219 HNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
N+R A+ +AQETL + LA+RLG+ +LK E+EDL +L+P +R +
Sbjct: 148 QNLRLAVKQMEPNAKLLAQETLDVIAPLANRLGIGSLKWEMEDLSLRILEPDAYRAI 204
>gi|146306766|ref|YP_001187231.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas mendocina ymp]
gi|421506221|ref|ZP_15953146.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas mendocina DLHK]
gi|145574967|gb|ABP84499.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas mendocina ymp]
gi|400343003|gb|EJO91388.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas mendocina DLHK]
Length = 747
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIKADISGRAKHIYSIWRKMQRKGLQFSQIYDVRAVRVLV---------PEVRDCYTTLG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVLGPEGKVLEVQIRTHSMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQSISSMDESDI 534
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 74/143 (51%), Gaps = 17/143 (11%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------------- 193
D++VA +++ V + +L ++ + FG VAKL+ GV R++ I+
Sbjct: 83 DSLVAAVIYRGVREGKITLAAVHQRFGPVVAKLIEGVLRMAAISASINPRESVVVGSQTQ 142
Query: 194 -QLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+ LR+ V+ + +LA+R +R + K + VA+E I+ LA RLG+
Sbjct: 143 VENLRKMLVAMVDDVRVALIKLAERTCAIRAVKEADEEKRQRVAREVFDIYAPLAHRLGI 202
Query: 253 WALKAELEDLCFAVLQPQIFRKM 275
+K ELEDL F L+P+ ++++
Sbjct: 203 GHIKWELEDLSFRYLEPEQYKQI 225
>gi|424845459|ref|ZP_18270070.1| (p)ppGpp synthetase, RelA/SpoT family [Jonquetella anthropi DSM
22815]
gi|363986897|gb|EHM13727.1| (p)ppGpp synthetase, RelA/SpoT family [Jonquetella anthropi DSM
22815]
Length = 762
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/135 (49%), Positives = 87/135 (64%), Gaps = 9/135 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ ++ R K YSI+ KM RK + I ++YD ALRV+V D + CYS+L
Sbjct: 272 GIKNSIKGRAKHFYSIYEKMNRKKLSIDQLYDLLALRVIVED---------VAQCYSVLG 322
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH +W PI G+FDDYI NPK + YQSLHT V GP G LEVQIRT MH AE+G+AAH
Sbjct: 323 VVHTIWKPIPGQFDDYIANPKNNMYQSLHTTVLGPSGEPLEVQIRTWAMHWRAEYGVAAH 382
Query: 514 WLYKETGNKLQSISS 528
W YKE + + + S
Sbjct: 383 WRYKEGDSHVDDLDS 397
Score = 99.4 bits (246), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 100/195 (51%), Gaps = 14/195 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V +A FA AH Q R G+PY+ H + ILA + K V T+ A +LHDV++D
Sbjct: 67 VGEAFVFAAGAHGEQMRMGGEPYIIHPVFAASILADM-----KLDVATLQAALLHDVLED 121
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLS---------YINQLLRRHRRINVNQGTLGHEEL 214
+ + E FG+ V LV GV++L Y + LR+ + + +L
Sbjct: 122 TECTAEQMRERFGEVVTTLVDGVTKLGKLPFKTFEDYQAENLRKMFLVMAKDIRVVLIKL 181
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADR HNMR++ A+ K A+ETL I+ LA RLG++ +K LEDL F P+++ +
Sbjct: 182 ADRTHNMRSLGAMRRDKQIRTAKETLEIYAPLAHRLGIYQMKRTLEDLAFKYYDPEMYYE 241
Query: 275 MRADLASMWSPRNRV 289
+++ + R V
Sbjct: 242 IKSKVKKRLPEREAV 256
>gi|422616769|ref|ZP_16685474.1| RelA/SpoT protein, partial [Pseudomonas syringae pv. japonica str.
M301072]
gi|330897095|gb|EGH28573.1| RelA/SpoT protein, partial [Pseudomonas syringae pv. japonica str.
M301072]
Length = 611
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNK 522
W YK T K
Sbjct: 366 WRYKGTDVK 374
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 91/200 (45%), Gaps = 27/200 (13%)
Query: 98 IFNDEQVQKAIAFAKRAH-----HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
+ + E ++KA FA+ A H G + ILA L K D++
Sbjct: 31 VLDREVMKKACEFAREAEQTDKAHKNHWAEGTSSFQTGLEIAEILADL-----KLDQDSL 85
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN-----------------QL 195
VA +++ V + +L +E+ FG VAKL+ GV R++ I+ +
Sbjct: 86 VAAVIYRGVREGLIALPEVEQRFGAMVAKLIDGVLRMAAISASLSPRQSLVLGSQAQVEN 145
Query: 196 LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 255
LR+ V+ + +LA+R +R + K VA+E I+ LA RLG+ +
Sbjct: 146 LRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRLGIGHI 205
Query: 256 KAELEDLCFAVLQPQIFRKM 275
K ELEDL F L+P ++++
Sbjct: 206 KWELEDLSFRYLEPDQYKQI 225
>gi|410663229|ref|YP_006915600.1| GTP pyrophosphokinase [Simiduia agarivorans SA1 = DSM 21679]
gi|409025586|gb|AFU97870.1| GTP pyrophosphokinase [Simiduia agarivorans SA1 = DSM 21679]
Length = 748
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 94/137 (68%), Gaps = 10/137 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+E ++ R K +YSI+ KMRRK++G +VYD RA+R++V P+++ CY++L I
Sbjct: 259 IEGEITGRAKHIYSIWRKMRRKNIGFSQVYDIRAVRILV---------PSVRDCYAVLGI 309
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW I EFDDYI +PK +GY+SLHTAV GP+ LEVQIRT MH+ AE G+ AHW
Sbjct: 310 VHSLWRNIPNEFDDYIASPKENGYRSLHTAVIGPEQKVLEVQIRTHGMHQDAEFGVCAHW 369
Query: 515 LYKETGNKLQSISSMDE 531
YK T +K +S + D+
Sbjct: 370 RYKGT-DKEESQNGYDQ 385
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 71/141 (50%), Gaps = 18/141 (12%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN--QL------------ 195
++++A IL+ V + SL + + FG+ ++KL+ GV R++ I+ QL
Sbjct: 85 ESLIAAILYRAVREGKLSLDRVAKAFGNTISKLIEGVLRMAAISATQLDESIALGRESEE 144
Query: 196 ----LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLG 251
+R+ V+ + +LA+R +R + + + VA+E ++ LA RLG
Sbjct: 145 QAENVRKMLVAMVDDVRVALIKLAERTCAIRALKTATEERRQRVAKEIANVYAPLAHRLG 204
Query: 252 LWALKAELEDLCFAVLQPQIF 272
+ +K ELEDL F L+P +
Sbjct: 205 IGHIKWELEDLSFRYLEPDDY 225
>gi|260655712|ref|ZP_05861185.1| GTP diphosphokinase [Jonquetella anthropi E3_33 E1]
gi|260629629|gb|EEX47823.1| GTP diphosphokinase [Jonquetella anthropi E3_33 E1]
Length = 762
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/135 (49%), Positives = 87/135 (64%), Gaps = 9/135 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ ++ R K YSI+ KM RK + I ++YD ALRV+V D + CYS+L
Sbjct: 272 GIKNSIKGRAKHFYSIYEKMNRKKLSIDQLYDLLALRVIVED---------VAQCYSVLG 322
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH +W PI G+FDDYI NPK + YQSLHT V GP G LEVQIRT MH AE+G+AAH
Sbjct: 323 VVHTIWKPIPGQFDDYIANPKNNMYQSLHTTVLGPSGEPLEVQIRTWAMHWRAEYGVAAH 382
Query: 514 WLYKETGNKLQSISS 528
W YKE + + + S
Sbjct: 383 WRYKEGDSHVDDLDS 397
Score = 99.0 bits (245), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 100/195 (51%), Gaps = 14/195 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V +A FA AH Q R G+PY+ H + ILA + K V T+ A +LHDV++D
Sbjct: 67 VGEAFVFAAGAHGEQMRMGGEPYIIHPVFAASILADM-----KLDVATLQAALLHDVLED 121
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLS---------YINQLLRRHRRINVNQGTLGHEEL 214
+ + E FG+ V LV GV++L Y + LR+ + + +L
Sbjct: 122 TECTAEQMRERFGEVVTTLVDGVTKLGKLPFKTFEDYQAENLRKMFLVMAKDIRVVLIKL 181
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADR HNMR++ A+ K A+ETL I+ LA RLG++ +K LEDL F P+++ +
Sbjct: 182 ADRAHNMRSLGAMRRDKQIRTAKETLEIYAPLAHRLGIYQMKRTLEDLAFKYYDPEMYYE 241
Query: 275 MRADLASMWSPRNRV 289
+++ + R V
Sbjct: 242 IKSKVKKRLPEREAV 256
>gi|347753065|ref|YP_004860630.1| (p)ppGpp synthetase I SpoT/RelA [Bacillus coagulans 36D1]
gi|347585583|gb|AEP01850.1| (p)ppGpp synthetase I, SpoT/RelA [Bacillus coagulans 36D1]
Length = 729
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/191 (45%), Positives = 110/191 (57%), Gaps = 21/191 (10%)
Query: 99 FNDEQVQ---KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAML--IPSSGKRAVDTVV 153
NDE V+ A AFA +AH GQ RK+G+PY+ H I ILA L PS TV
Sbjct: 20 LNDEHVEMVRHACAFASKAHEGQKRKSGEPYIIHPIQVAGILADLEMDPS-------TVA 72
Query: 154 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRL------SYINQLLRRHRRINVNQG 207
AG LHDVV+D +L + EEF DEVA LV GV++L S+ Q HR++ V
Sbjct: 73 AGFLHDVVEDTDVTLDELREEFNDEVAMLVDGVTKLGKIKYKSHEEQQAENHRKMFVAMA 132
Query: 208 T---LGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 264
+ +LADRLHNMRT+ LPP K R +A ETL I+ LA RLG+ A+K ELED
Sbjct: 133 QDIRVILIKLADRLHNMRTLKHLPPEKQRRIANETLEIFAPLAHRLGISAIKWELEDTSL 192
Query: 265 AVLQPQIFRKM 275
L PQ + ++
Sbjct: 193 RYLNPQQYYRI 203
Score = 122 bits (307), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 79/120 (65%), Gaps = 9/120 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+S R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L ++H
Sbjct: 238 ISGRPKHIYSIYRKMVQQHKQFNEIYDLLAVRIIV---------KSIKDCYAVLGVIHTC 288
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPLEVQIRTFEMHRIAEYGVAAHWAYKE 348
>gi|423094042|ref|ZP_17081838.1| GTP pyrophosphokinase [Pseudomonas fluorescens Q2-87]
gi|397885448|gb|EJL01931.1| GTP pyrophosphokinase [Pseudomonas fluorescens Q2-87]
Length = 748
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVEADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQSISSMDESDI 534
W YK G ++S S+ E I
Sbjct: 366 WKYK--GTDVKSGSNHYEEKI 384
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 82/171 (47%), Gaps = 26/171 (15%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA +L+ V + L + + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLVAAVLYRGVREGQIQLPVVSQRFGTVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 210 GHEE-------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 250
G E LA+R +R + + K VA+E I+ LA RL
Sbjct: 141 GQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKSADDEKRNRVAREVFDIYAPLAHRL 200
Query: 251 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSS 301
G+ +K ELEDL F L+P +++ +A + R R+ R IT +++
Sbjct: 201 GIGHIKWELEDLSFRYLEPDQYKQ----IAKLLHER-RLDRERFITDVMTQ 246
>gi|422637401|ref|ZP_16700833.1| RelA/SpoT protein [Pseudomonas syringae Cit 7]
gi|330949797|gb|EGH50057.1| RelA/SpoT protein [Pseudomonas syringae Cit 7]
Length = 747
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNK 522
W YK T K
Sbjct: 366 WRYKGTDVK 374
Score = 62.8 bits (151), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 91/200 (45%), Gaps = 27/200 (13%)
Query: 98 IFNDEQVQKAIAFAKRAH-----HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
+ + E ++KA FA+ A H G + ILA L K D++
Sbjct: 31 VLDREVMKKACEFAREAEQTDKAHKNHWAEGTSSFQTGLEIAEILADL-----KLDQDSL 85
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN-----------------QL 195
VA +++ V + +L +E+ FG VAKL+ GV R++ I+ +
Sbjct: 86 VAAVIYRGVREGLVALPDVEQRFGATVAKLIDGVLRMAAISASLSPRQSLVLGSQAQVEN 145
Query: 196 LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 255
LR+ V+ + +LA+R +R + K VA+E I+ LA RLG+ +
Sbjct: 146 LRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRLGIGHI 205
Query: 256 KAELEDLCFAVLQPQIFRKM 275
K ELEDL F L+P ++++
Sbjct: 206 KWELEDLSFRYLEPDQYKQI 225
>gi|302059737|ref|ZP_07251278.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tomato K40]
Length = 661
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 169 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 219
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 220 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 279
Query: 514 WLYKETGNKLQSISSMDESDI 534
W YK G ++S S+ E I
Sbjct: 280 WRYK--GTDVKSSSNHYEEKI 298
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 17/139 (12%)
Query: 154 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN-----------------QLL 196
A +++ V + L +E+ FG VAKL+ GV R++ I+ + L
Sbjct: 1 AAVMYRGVREGVIPLPDVEQRFGATVAKLIDGVLRMAAISASLSPRQSLVLGSQAQVENL 60
Query: 197 RRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 256
R+ V+ + +LA+R +R + K VA+E I+ LA RLG+ +K
Sbjct: 61 RKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRLGIGHIK 120
Query: 257 AELEDLCFAVLQPQIFRKM 275
ELEDL F L+P ++++
Sbjct: 121 WELEDLSFRYLEPDQYKQI 139
>gi|422297689|ref|ZP_16385319.1| GTP pyrophospho kinase [Pseudomonas avellanae BPIC 631]
gi|407990823|gb|EKG32828.1| GTP pyrophospho kinase [Pseudomonas avellanae BPIC 631]
Length = 711
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 219 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 269
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 270 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 329
Query: 514 WLYKETGNKLQSISSMDESDI 534
W YK G ++S S+ E I
Sbjct: 330 WRYK--GTDVKSGSNHYEEKI 348
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 88/194 (45%), Gaps = 27/194 (13%)
Query: 104 VQKAIAFAKRAH-----HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILH 158
+++A FA++A H G + ILA L K D++VA +++
Sbjct: 1 MKQACEFARQAEQNDKAHKNHWAEGTSSFQTGLEIAEILADL-----KLDQDSLVAAVMY 55
Query: 159 DVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN-----------------QLLRRHRR 201
V + L +E+ FG VAKL+ GV R++ I+ + LR+
Sbjct: 56 RGVREGVIPLPDVEQRFGATVAKLIDGVLRMAAISASLSPRQSLVLGSQAQVENLRKMLV 115
Query: 202 INVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 261
V+ + +LA+R +R + K VA+E I+ LA RLG+ +K ELED
Sbjct: 116 AMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRLGIGHIKWELED 175
Query: 262 LCFAVLQPQIFRKM 275
L F L+P ++++
Sbjct: 176 LSFRYLEPDQYKQI 189
>gi|429212426|ref|ZP_19203591.1| GTP pyrophosphokinase [Pseudomonas sp. M1]
gi|428156908|gb|EKX03456.1| GTP pyrophosphokinase [Pseudomonas sp. M1]
Length = 752
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ LS R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 256 GIKADLSGRAKHIYSIWRKMQRKGLDFSQIYDVRAVRVLV---------PEMRDCYTALG 306
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 307 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 366
Query: 514 WLYKETGNKLQSISSMDESDI 534
W YK G ++S S+ E I
Sbjct: 367 WRYK--GTDVKSGSNHYEEKI 385
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 95/201 (47%), Gaps = 20/201 (9%)
Query: 94 TGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYL--THCIHTGRILAMLIPSSGKRAVDT 151
T P+ + + + +A FA+ A + + + T TG +A ++ + K ++
Sbjct: 27 TLVPVLDRKVLLEACEFAREAENKAVSQVEAAWADGTSSFQTGLEIAEIL-ADLKLDQES 85
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN-----------------Q 194
+VA +++ V + L +++ FG VAKL+ GV R++ I+ +
Sbjct: 86 LVAAVIYRGVREGKVKLEEVQQRFGPVVAKLIEGVLRMAAISASLNPRQSMVLGTQAQIE 145
Query: 195 LLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 254
LR+ V+ + +LA+R +R + K VA+E I+ LA RLG+
Sbjct: 146 NLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADEEKRMRVAREVFDIYAPLAHRLGIGH 205
Query: 255 LKAELEDLCFAVLQPQIFRKM 275
+K ELEDL F L+P ++++
Sbjct: 206 IKWELEDLSFRYLEPDQYKQI 226
>gi|336114504|ref|YP_004569271.1| (p)ppGpp synthetase I SpoT/RelA [Bacillus coagulans 2-6]
gi|335367934|gb|AEH53885.1| (p)ppGpp synthetase I, SpoT/RelA [Bacillus coagulans 2-6]
Length = 723
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/191 (45%), Positives = 110/191 (57%), Gaps = 21/191 (10%)
Query: 99 FNDEQVQ---KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAML--IPSSGKRAVDTVV 153
NDE V+ A AFA +AH GQ RK+G+PY+ H I ILA L PS TV
Sbjct: 14 LNDEHVEMVRHACAFASKAHEGQKRKSGEPYIIHPIQVAGILADLEMDPS-------TVA 66
Query: 154 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRL------SYINQLLRRHRRINVNQG 207
AG LHDVV+D +L + EEF DEVA LV GV++L S+ Q HR++ V
Sbjct: 67 AGFLHDVVEDTDVTLDELREEFNDEVAMLVDGVTKLGKIKYKSHEEQQAENHRKMFVAMA 126
Query: 208 T---LGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 264
+ +LADRLHNMRT+ LPP K R +A ETL I+ LA RLG+ A+K ELED
Sbjct: 127 QDIRVILIKLADRLHNMRTLKHLPPEKQRRIANETLEIFAPLAHRLGISAIKWELEDTSL 186
Query: 265 AVLQPQIFRKM 275
L PQ + ++
Sbjct: 187 RYLNPQQYYRI 197
Score = 122 bits (306), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 79/120 (65%), Gaps = 9/120 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+S R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L ++H
Sbjct: 232 ISGRPKHIYSIYRKMVQQHKQFNEIYDLLAVRIIV---------KSIKDCYAVLGVIHTC 282
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 283 WKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPLEVQIRTFEMHRIAEYGVAAHWAYKE 342
>gi|422590107|ref|ZP_16664765.1| GTP pyrophosphokinase [Pseudomonas syringae pv. morsprunorum str.
M302280]
gi|422653534|ref|ZP_16716298.1| GTP pyrophosphokinase [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|330877091|gb|EGH11240.1| GTP pyrophosphokinase [Pseudomonas syringae pv. morsprunorum str.
M302280]
gi|330966581|gb|EGH66841.1| GTP pyrophosphokinase [Pseudomonas syringae pv. actinidiae str.
M302091]
Length = 747
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNK 522
W YK T K
Sbjct: 366 WRYKGTDVK 374
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 91/200 (45%), Gaps = 27/200 (13%)
Query: 98 IFNDEQVQKAIAFAKRAH-----HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
+ + E +++A FA++A H G + ILA L K D++
Sbjct: 31 VLDREVMKQACEFARQAEQNDKAHKNHWAEGTSSFQTGLEIAEILADL-----KLDQDSL 85
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN-----------------QL 195
VA +++ V + L +E+ FG VAKL+ GV R++ I+ +
Sbjct: 86 VAAVMYRGVREGVIPLPDVEQRFGATVAKLIDGVLRMAAISASLSPRQSLVLGSQAQVEN 145
Query: 196 LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 255
LR+ V+ + +LA+R +R + K VA+E I+ LA RLG+ +
Sbjct: 146 LRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRLGIGHI 205
Query: 256 KAELEDLCFAVLQPQIFRKM 275
K ELEDL F L+P ++++
Sbjct: 206 KWELEDLSFRYLEPDQYKQI 225
>gi|237798966|ref|ZP_04587427.1| GTP pyrophosphokinase, partial [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|237806202|ref|ZP_04592906.1| GTP pyrophosphokinase, partial [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331021820|gb|EGI01877.1| GTP pyrophosphokinase [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331027315|gb|EGI07370.1| GTP pyrophosphokinase [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 533
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQSISSMDESDI 534
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 94/196 (47%), Gaps = 19/196 (9%)
Query: 98 IFNDEQVQKAIAFAKRAHHG-QFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
+ + E +++A FA++A + K T TG +A ++ + K D++VA +
Sbjct: 31 VLDREVMKQACEFARQAEQNDKVHKNHWAEGTSSFQTGLEIAEIL-ADLKLDQDSLVAAV 89
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN-----------------QLLRRH 199
++ V + L +E+ FG VAKL+ GV R++ I+ + LR+
Sbjct: 90 IYRGVREGVIPLPEVEQRFGSTVAKLIDGVLRMAAISASLSPRQSLVLGSQAQVENLRKM 149
Query: 200 RRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAEL 259
V+ + +LA+R +R + K VA+E I+ LA RLG+ +K EL
Sbjct: 150 LVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRLGIGHIKWEL 209
Query: 260 EDLCFAVLQPQIFRKM 275
EDL F L+P ++++
Sbjct: 210 EDLSFRYLEPDQYKQI 225
>gi|71733843|ref|YP_275858.1| GTP pyrophosphokinase [Pseudomonas syringae pv. phaseolicola 1448A]
gi|71554396|gb|AAZ33607.1| GTP pyrophosphokinase [Pseudomonas syringae pv. phaseolicola 1448A]
Length = 744
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 252 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 302
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 303 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 362
Query: 514 WLYKETGNK 522
W YK T K
Sbjct: 363 WRYKGTDVK 371
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 91/200 (45%), Gaps = 27/200 (13%)
Query: 98 IFNDEQVQKAIAFAKRAH-----HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
+ + E +++A FA++A H G + ILA L K D++
Sbjct: 28 VLDREVMKQACEFARQAEQNDKAHKNHWAEGTSSFQTGLEIAEILADL-----KLDQDSL 82
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN-----------------QL 195
VA +++ V + L +E+ FG VAKL+ GV R++ I+ +
Sbjct: 83 VAAVIYRGVREGVIPLPEVEQRFGATVAKLIDGVLRMAAISASLSPRQSLVLGSQAQVEN 142
Query: 196 LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 255
LR+ V+ + +LA+R +R + K VA+E I+ LA RLG+ +
Sbjct: 143 LRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRLGIGHI 202
Query: 256 KAELEDLCFAVLQPQIFRKM 275
K ELEDL F L+P ++++
Sbjct: 203 KWELEDLSFRYLEPDQYKQI 222
>gi|429332116|ref|ZP_19212848.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas putida CSV86]
gi|428763166|gb|EKX85349.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas putida CSV86]
Length = 746
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 98/154 (63%), Gaps = 16/154 (10%)
Query: 381 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 440
L+ ELL + G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVKADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 441 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 500
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 501 KMHEYAEHGLAAHWLYKETGNKLQSISSMDESDI 534
MHE AE G+ AHW YK G ++S S+ E I
Sbjct: 353 AMHEEAELGVCAHWRYK--GTDVKSGSNHYEEKI 384
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 17/143 (11%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------------- 193
D++VA I++ V + +L + + FG V+KL+ GV R++ I+
Sbjct: 83 DSLVAAIIYRAVREGKATLAEVAQRFGPVVSKLIDGVLRMAAISASLNPRQSLVLGSQAQ 142
Query: 194 -QLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+ LR+ V+ + +LA+R +R + K VA+E I+ LA RLG+
Sbjct: 143 VENLRKMLVAMVDDVRVALIKLAERTCAIRAVKGADDEKRHRVAREVFDIYAPLAHRLGI 202
Query: 253 WALKAELEDLCFAVLQPQIFRKM 275
+K ELEDL F L+P ++++
Sbjct: 203 GHIKWELEDLSFRYLEPDQYKQI 225
>gi|298157515|gb|EFH98596.1| GTP pyrophosphokinase / Guanosine-3',5'-bis(diphosphate)
3'-pyrophosphohydrolase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 747
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNK 522
W YK T K
Sbjct: 366 WRYKGTDVK 374
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 91/200 (45%), Gaps = 27/200 (13%)
Query: 98 IFNDEQVQKAIAFAKRAH-----HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
+ + E +++A FA++A H G + ILA L K D++
Sbjct: 31 VLDREVMKQACEFARQAEQNDKAHKNHWAEGTSSFQTGLEIAEILADL-----KLDQDSL 85
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN-----------------QL 195
VA +++ V + L +E+ FG VAKL+ GV R++ I+ +
Sbjct: 86 VAAVIYRGVREGVIPLPEVEQRFGATVAKLIDGVLRMAAISASLSPRQSLVLGSQAQVEN 145
Query: 196 LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 255
LR+ V+ + +LA+R +R + K VA+E I+ LA RLG+ +
Sbjct: 146 LRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRLGIGHI 205
Query: 256 KAELEDLCFAVLQPQIFRKM 275
K ELEDL F L+P ++++
Sbjct: 206 KWELEDLSFRYLEPDQYKQI 225
>gi|289628370|ref|ZP_06461324.1| GTP pyrophosphokinase [Pseudomonas syringae pv. aesculi str. NCPPB
3681]
gi|289648124|ref|ZP_06479467.1| GTP pyrophosphokinase [Pseudomonas syringae pv. aesculi str. 2250]
gi|422581197|ref|ZP_16656340.1| GTP pyrophosphokinase [Pseudomonas syringae pv. aesculi str.
0893_23]
gi|330866047|gb|EGH00756.1| GTP pyrophosphokinase [Pseudomonas syringae pv. aesculi str.
0893_23]
Length = 747
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNK 522
W YK T K
Sbjct: 366 WRYKGTDVK 374
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 91/200 (45%), Gaps = 27/200 (13%)
Query: 98 IFNDEQVQKAIAFAKRAH-----HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
+ + E +++A FA++A H G + ILA L K D++
Sbjct: 31 VLDREVMKQACEFARQAEQNDKAHKNHWAEGTSSFQTGLEIAEILADL-----KLDQDSL 85
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN-----------------QL 195
VA +++ V + L +E+ FG VAKL+ GV R++ I+ +
Sbjct: 86 VAAVIYRGVREGVIPLPEVEQRFGATVAKLIDGVLRMAAISASLSPRQSLVLGSQAQVEN 145
Query: 196 LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 255
LR+ V+ + +LA+R +R + K VA+E I+ LA RLG+ +
Sbjct: 146 LRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRLGIGHI 205
Query: 256 KAELEDLCFAVLQPQIFRKM 275
K ELEDL F L+P ++++
Sbjct: 206 KWELEDLSFRYLEPDQYKQI 225
>gi|257485907|ref|ZP_05639948.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|416017928|ref|ZP_11564965.1| GTP pyrophosphokinase [Pseudomonas syringae pv. glycinea str. B076]
gi|416028609|ref|ZP_11571554.1| GTP pyrophosphokinase [Pseudomonas syringae pv. glycinea str. race
4]
gi|422404211|ref|ZP_16481265.1| GTP pyrophosphokinase [Pseudomonas syringae pv. glycinea str. race
4]
gi|422596420|ref|ZP_16670702.1| GTP pyrophosphokinase [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|422605745|ref|ZP_16677758.1| GTP pyrophosphokinase [Pseudomonas syringae pv. mori str. 301020]
gi|422684161|ref|ZP_16742412.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|320323401|gb|EFW79489.1| GTP pyrophosphokinase [Pseudomonas syringae pv. glycinea str. B076]
gi|320327598|gb|EFW83610.1| GTP pyrophosphokinase [Pseudomonas syringae pv. glycinea str. race
4]
gi|330876402|gb|EGH10551.1| GTP pyrophosphokinase [Pseudomonas syringae pv. glycinea str. race
4]
gi|330889400|gb|EGH22061.1| GTP pyrophosphokinase [Pseudomonas syringae pv. mori str. 301020]
gi|330986719|gb|EGH84822.1| GTP pyrophosphokinase [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|331013486|gb|EGH93542.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tabaci str. ATCC
11528]
Length = 747
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNK 522
W YK T K
Sbjct: 366 WRYKGTDVK 374
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 91/200 (45%), Gaps = 27/200 (13%)
Query: 98 IFNDEQVQKAIAFAKRAH-----HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
+ + E +++A FA++A H G + ILA L K D++
Sbjct: 31 VLDREVMKQACEFARQAEQNDKAHKNHWAEGTSSFQTGLEIAEILADL-----KLDQDSL 85
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN-----------------QL 195
VA +++ V + L +E+ FG VAKL+ GV R++ I+ +
Sbjct: 86 VAAVIYRGVREGVIPLPEVEQRFGATVAKLIDGVLRMAAISASLSPRQSLVLGSQAQVEN 145
Query: 196 LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 255
LR+ V+ + +LA+R +R + K VA+E I+ LA RLG+ +
Sbjct: 146 LRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRLGIGHI 205
Query: 256 KAELEDLCFAVLQPQIFRKM 275
K ELEDL F L+P ++++
Sbjct: 206 KWELEDLSFRYLEPDQYKQI 225
>gi|443642861|ref|ZP_21126711.1| Bifunctional (p)ppGpp synthetase I / (p)ppGpp pyrophosphohydrolase
[Pseudomonas syringae pv. syringae B64]
gi|443282878|gb|ELS41883.1| Bifunctional (p)ppGpp synthetase I / (p)ppGpp pyrophosphohydrolase
[Pseudomonas syringae pv. syringae B64]
Length = 747
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNK 522
W YK T K
Sbjct: 366 WRYKGTDVK 374
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 91/200 (45%), Gaps = 27/200 (13%)
Query: 98 IFNDEQVQKAIAFAKRAH-----HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
+ + E ++KA FA+ A H G + ILA L K D++
Sbjct: 31 VLDREVMKKACEFAREAEQTDKAHKNHWAEGTSSFQTGLEIAEILADL-----KLDQDSL 85
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN-----------------QL 195
VA +++ V + +L +E+ FG VAKL+ GV R++ I+ +
Sbjct: 86 VAAVIYRGVREGLIALPEVEQRFGATVAKLIDGVLRMAAISASLSPRQSLVLGSQAQVEN 145
Query: 196 LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 255
LR+ V+ + +LA+R +R + K VA+E I+ LA RLG+ +
Sbjct: 146 LRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRLGIGHI 205
Query: 256 KAELEDLCFAVLQPQIFRKM 275
K ELEDL F L+P ++++
Sbjct: 206 KWELEDLSFRYLEPDQYKQI 225
>gi|66046924|ref|YP_236765.1| RelA/SpoT protein [Pseudomonas syringae pv. syringae B728a]
gi|63257631|gb|AAY38727.1| RelA/SpoT protein [Pseudomonas syringae pv. syringae B728a]
Length = 747
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNK 522
W YK T K
Sbjct: 366 WRYKGTDVK 374
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 91/200 (45%), Gaps = 27/200 (13%)
Query: 98 IFNDEQVQKAIAFAKRAH-----HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
+ + E ++KA FA+ A H G + ILA L K D++
Sbjct: 31 VLDREVMKKACEFAREAEQTDKAHKNHWAEGTSSFQTGLEIAEILADL-----KLDQDSL 85
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN-----------------QL 195
VA +++ V + +L +E+ FG VAKL+ GV R++ I+ +
Sbjct: 86 VAAVIYRGVREGLIALPDVEQRFGATVAKLIDGVLRMAAISASLSPRQSLVLGSQAQVEN 145
Query: 196 LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 255
LR+ V+ + +LA+R +R + K VA+E I+ LA RLG+ +
Sbjct: 146 LRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRLGIGHI 205
Query: 256 KAELEDLCFAVLQPQIFRKM 275
K ELEDL F L+P ++++
Sbjct: 206 KWELEDLSFRYLEPDQYKQI 225
>gi|424068834|ref|ZP_17806283.1| GTP pyrophospho kinase [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|424073260|ref|ZP_17810678.1| GTP pyrophospho kinase [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|407996341|gb|EKG36818.1| GTP pyrophospho kinase [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|407996350|gb|EKG36826.1| GTP pyrophospho kinase [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
Length = 747
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNK 522
W YK T K
Sbjct: 366 WRYKGTDVK 374
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 91/200 (45%), Gaps = 27/200 (13%)
Query: 98 IFNDEQVQKAIAFAKRAH-----HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
+ + E ++KA FA+ A H G + ILA L K D++
Sbjct: 31 VLDREVMKKACEFAREAEQTDKAHKNHWAEGTSSFQTGLEIAEILADL-----KLDQDSL 85
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN-----------------QL 195
VA +++ V + +L +E+ FG VAKL+ GV R++ I+ +
Sbjct: 86 VAAVIYRGVREGLIALPDVEQRFGATVAKLIDGVLRMAAISASLSPRQSLVLGSQAQVEN 145
Query: 196 LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 255
LR+ V+ + +LA+R +R + K VA+E I+ LA RLG+ +
Sbjct: 146 LRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRLGIGHI 205
Query: 256 KAELEDLCFAVLQPQIFRKM 275
K ELEDL F L+P ++++
Sbjct: 206 KWELEDLSFRYLEPDQYKQI 225
>gi|388543450|ref|ZP_10146741.1| RelA protein [Pseudomonas sp. M47T1]
gi|388278762|gb|EIK98333.1| RelA protein [Pseudomonas sp. M47T1]
Length = 748
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 98/154 (63%), Gaps = 16/154 (10%)
Query: 381 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 440
L+ ELL + G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVKADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 441 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 500
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 501 KMHEYAEHGLAAHWLYKETGNKLQSISSMDESDI 534
MHE AE G+ AHW YK G ++S S+ E I
Sbjct: 353 AMHEEAELGVCAHWRYK--GTDVKSGSNHYEEKI 384
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 19/195 (9%)
Query: 99 FNDEQVQKAIAFAKRA-HHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGIL 157
+ E ++ A FA +A G K T C G +A ++ + K DT+VA ++
Sbjct: 32 LDREALKTACEFALQAEQQGNKAKHSWADGTSCFQAGLEIAEIL-ADLKLDQDTLVAAVI 90
Query: 158 HDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN-----------------QLLRRHR 200
+ V + +L + + FG VAKL+ GV R++ I+ + LR+
Sbjct: 91 YRAVREGRVTLADVGQRFGALVAKLIDGVLRMAAISASLSPRQSLVLGSQGQVENLRKML 150
Query: 201 RINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 260
V+ + +LA+R +R + K VA+E I+ LA RLG+ +K ELE
Sbjct: 151 VAMVDDVRVALIKLAERTCAIRAVKNADEEKRNRVAREVFDIYAPLAHRLGIGHIKWELE 210
Query: 261 DLCFAVLQPQIFRKM 275
DL F L+P ++++
Sbjct: 211 DLSFRYLEPDQYKQI 225
>gi|440745105|ref|ZP_20924402.1| RelA/SpoT protein [Pseudomonas syringae BRIP39023]
gi|440373090|gb|ELQ09862.1| RelA/SpoT protein [Pseudomonas syringae BRIP39023]
Length = 747
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNK 522
W YK T K
Sbjct: 366 WRYKGTDVK 374
Score = 62.4 bits (150), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 91/200 (45%), Gaps = 27/200 (13%)
Query: 98 IFNDEQVQKAIAFAKRAH-----HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
+ + E ++KA FA+ A H G + ILA L K D++
Sbjct: 31 VLDREVMKKACEFAREAEQTDKAHKNHWAEGTSSFQTGLEIAEILADL-----KLDQDSL 85
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN-----------------QL 195
VA +++ V + +L +E+ FG VAKL+ GV R++ I+ +
Sbjct: 86 VAAVIYRGVREGLVALPDVEQRFGATVAKLIDGVLRMAAISASLSPRQSLVLGSQAQVEN 145
Query: 196 LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 255
LR+ V+ + +LA+R +R + K VA+E I+ LA RLG+ +
Sbjct: 146 LRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRLGIGHI 205
Query: 256 KAELEDLCFAVLQPQIFRKM 275
K ELEDL F L+P ++++
Sbjct: 206 KWELEDLSFRYLEPDQYKQI 225
>gi|440722555|ref|ZP_20902933.1| RelA/SpoT protein [Pseudomonas syringae BRIP34876]
gi|440729399|ref|ZP_20909579.1| RelA/SpoT protein [Pseudomonas syringae BRIP34881]
gi|440358722|gb|ELP96062.1| RelA/SpoT protein [Pseudomonas syringae BRIP34881]
gi|440361143|gb|ELP98385.1| RelA/SpoT protein [Pseudomonas syringae BRIP34876]
Length = 747
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNK 522
W YK T K
Sbjct: 366 WRYKGTDVK 374
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 91/200 (45%), Gaps = 27/200 (13%)
Query: 98 IFNDEQVQKAIAFAKRAH-----HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
+ + E ++KA FA+ A H G + ILA L K D++
Sbjct: 31 VLDREVMKKACEFAREAEQTDKAHKNHWAEGTSSFQTGLEIAEILADL-----KLDQDSL 85
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN-----------------QL 195
VA +++ V + +L +E+ FG VAKL+ GV R++ I+ +
Sbjct: 86 VAAVIYRGVREGLIALPEVEQRFGAMVAKLIDGVLRMAAISASLSPRQSLVLGSQAQVEN 145
Query: 196 LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 255
LR+ V+ + +LA+R +R + K VA+E I+ LA RLG+ +
Sbjct: 146 LRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRLGIGHI 205
Query: 256 KAELEDLCFAVLQPQIFRKM 275
K ELEDL F L+P ++++
Sbjct: 206 KWELEDLSFRYLEPDQYKQI 225
>gi|409427770|ref|ZP_11262262.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas sp. HYS]
Length = 746
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 97/154 (62%), Gaps = 16/154 (10%)
Query: 381 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 440
L+ ELL + G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVNADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 441 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 500
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 501 KMHEYAEHGLAAHWLYKETGNKLQSISSMDESDI 534
MHE AE G+ AHW YK G ++S S+ E I
Sbjct: 353 AMHEEAELGVCAHWRYK--GTDVKSSSNHYEEKI 384
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 17/143 (11%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------------- 193
D++VA +++ V + +L + + FG V+KL+ GV R++ I+
Sbjct: 83 DSLVAAVIYRAVREGKVTLAEVGQRFGPVVSKLIDGVLRMAAISASLSPRQSLVLGSQAQ 142
Query: 194 -QLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+ LR+ V+ + +LA+R +R + K VA+E I+ LA RLG+
Sbjct: 143 VENLRKMLVAMVDDVRVALIKLAERTCAIRAVKGADDEKRNRVAREVFDIYAPLAHRLGI 202
Query: 253 WALKAELEDLCFAVLQPQIFRKM 275
+K ELEDL F L+P ++++
Sbjct: 203 GHIKWELEDLSFRYLEPDQYKQI 225
>gi|239815569|ref|YP_002944479.1| (p)ppGpp synthetase I SpoT/RelA [Variovorax paradoxus S110]
gi|239802146|gb|ACS19213.1| (p)ppGpp synthetase I, SpoT/RelA [Variovorax paradoxus S110]
Length = 747
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/146 (48%), Positives = 94/146 (64%), Gaps = 18/146 (12%)
Query: 381 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 440
LE+EL G+ T+ R K++YSI KMR K + +V+D ALRVVV
Sbjct: 247 LERELQAE-----GVRATVQGRPKNIYSIVKKMRGKSLDFAQVFDILALRVVV------- 294
Query: 441 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ----GPDGSALEVQ 496
P ++ CY+ L VH ++PID EFDDYI PKP+GYQSLHT V+ G G +E+Q
Sbjct: 295 --PDVKDCYAALAWVHSHFLPIDEEFDDYIARPKPNGYQSLHTVVREMVDGKPGKPIEIQ 352
Query: 497 IRTQKMHEYAEHGLAAHWLYKETGNK 522
IRT++MH++AEHG+AAHW YKE G+K
Sbjct: 353 IRTEEMHDHAEHGVAAHWAYKEAGHK 378
Score = 55.8 bits (133), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 34/193 (17%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A AFA+ + TG+ L H I+A + S +A +V AC
Sbjct: 40 RARAFAEPLIADEKLDTGENTLAHADAVAAIVAKMGGSEAMQAASYLVY---------AC 90
Query: 166 ESLGSIEEE----FGDEVAKLVAGVSRLSYINQLLRRHRR-INVNQGTLGHE-------- 212
+ L +E FGD A L ++L + + R + ++ +G G +
Sbjct: 91 QHLNRPQEVIAKVFGDNFAALAVETTKLVRVQEQARSASQGHHLAEGAAGAQTENVRKML 150
Query: 213 ------------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 260
LA RL +R A +VA+E+L ++ LA+RLG+W +K E+E
Sbjct: 151 LAFSRDLRVVMLRLASRLQTLRHAAASKQPAPESVARESLQVFAPLANRLGIWQVKWEIE 210
Query: 261 DLCFAVLQPQIFR 273
DL F L+P+ ++
Sbjct: 211 DLSFRFLEPETYK 223
>gi|423692851|ref|ZP_17667371.1| GTP diphosphokinase [Pseudomonas fluorescens SS101]
gi|387998684|gb|EIK60013.1| GTP diphosphokinase [Pseudomonas fluorescens SS101]
Length = 747
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/132 (52%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQS 525
W YK T K S
Sbjct: 366 WRYKGTDVKAGS 377
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 91/195 (46%), Gaps = 26/195 (13%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D+++A +L+ V + +L + + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLIAAVLYRGVREGHIALPLVSQRFGAVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 210 GHEE-------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 250
G E LA+R +R + K VA+E I+ LA RL
Sbjct: 141 GQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAHRL 200
Query: 251 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTAS 310
G+ +K ELEDL F L+P +++ +A++ R R+ R I+ ++ + +
Sbjct: 201 GIGHIKWELEDLSFRYLEPDQYKQ----IATLLHER-RLDRERFISDVMGQLRSELQATG 255
Query: 311 DDESFTTFDEHVLSM 325
D + +H+ S+
Sbjct: 256 VDADISGRAKHIYSI 270
>gi|398845089|ref|ZP_10602135.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM84]
gi|398253944|gb|EJN39055.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM84]
Length = 746
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/145 (50%), Positives = 92/145 (63%), Gaps = 14/145 (9%)
Query: 381 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 440
L+ ELL + G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVNADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 441 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 500
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEVRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 501 KMHEYAEHGLAAHWLYKETGNKLQS 525
MHE AE G+ AHW YK T K S
Sbjct: 353 GMHEEAELGVCAHWRYKGTDVKPSS 377
Score = 55.8 bits (133), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 72/143 (50%), Gaps = 17/143 (11%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------------- 193
D++VA +++ V + +L + + FG V+KL+ GV R++ I+
Sbjct: 83 DSLVAAVIYRSVREGKVTLAEVGQRFGPVVSKLIDGVLRMAAISASLSPRQSLVLGSQAQ 142
Query: 194 -QLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+ LR+ V+ + +LA+R +R + + K VA+E I+ LA RLG+
Sbjct: 143 VENLRKMLVAMVDDVRVALIKLAERTCAIRAVKSADDEKRLRVAREVFDIYAPLAHRLGI 202
Query: 253 WALKAELEDLCFAVLQPQIFRKM 275
+K ELEDL F L+P ++++
Sbjct: 203 GHIKWELEDLSFRYLEPDQYKQI 225
>gi|387894956|ref|YP_006325253.1| GTP pyrophosphokinase [Pseudomonas fluorescens A506]
gi|388467232|ref|ZP_10141442.1| GTP diphosphokinase [Pseudomonas synxantha BG33R]
gi|387163946|gb|AFJ59145.1| GTP pyrophosphokinase [Pseudomonas fluorescens A506]
gi|388010812|gb|EIK71999.1| GTP diphosphokinase [Pseudomonas synxantha BG33R]
Length = 747
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/132 (52%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQS 525
W YK T K S
Sbjct: 366 WRYKGTDVKAGS 377
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 91/195 (46%), Gaps = 26/195 (13%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D+++A +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLIAAVLYRGVREGHIPLATVGQRFGSVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 210 GHEE-------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 250
G E LA+R +R + K VA+E I+ LA RL
Sbjct: 141 GQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAHRL 200
Query: 251 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTAS 310
G+ +K ELEDL F L+P +++ +A++ R R+ R I+ ++ + +
Sbjct: 201 GIGHIKWELEDLSFRYLEPDQYKQ----IATLLHER-RLDRERFISDVMGQLRSELQATG 255
Query: 311 DDESFTTFDEHVLSM 325
D + +H+ S+
Sbjct: 256 VDADISGRAKHIYSI 270
>gi|345869729|ref|ZP_08821685.1| (p)ppGpp synthetase I, SpoT/RelA [Thiorhodococcus drewsii AZ1]
gi|343922591|gb|EGV33290.1| (p)ppGpp synthetase I, SpoT/RelA [Thiorhodococcus drewsii AZ1]
Length = 738
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 119/424 (28%), Positives = 188/424 (44%), Gaps = 90/424 (21%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP Q+ +A R +TG+ + H + T ILA L + +T+VA
Sbjct: 30 YPGEEHAQIARACEALARYRGDHRIETGETQVRHVLSTADILAGL-----RMDYETLVAA 84
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
+L+ ++ + ++E+FG VA +V ++R+ I NVN + ++
Sbjct: 85 LLNGCLNQTGLTEAQMQEQFGHNVAHMVGDLARIGQI---------ANVN-AIIAAKDQP 134
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
N+R + +A++ ++ LA R+ L +LE P+ K+
Sbjct: 135 QHEENLRRLLL-------GIAEDVRVVLVVLAERVHLMRAIKDLE--------PERRTKI 179
Query: 276 RADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVP 334
D +++P NR+G + +K LE +
Sbjct: 180 ARDTQRVYAPLANRLG-------------------------------IWQIKWELEDLSL 208
Query: 335 FDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPG 394
+ D KR L + Q A V+Q EA E+ G
Sbjct: 209 RYLQPDEYKRIAKLIAERREEREQYIATVMQ----------TLREAFEQ---------AG 249
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
++ ++ R K +YSI+ KMRRK V I +++D RA+R++V + CY+ L +
Sbjct: 250 IKAEITGRPKHIYSIWKKMRRKGVDIAEIFDLRAVRIMV---------ETVADCYAALGL 300
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW I EFDDYI PK + Y+SLHTAV GP+ +LEVQIRT +MH ++E G+AAHW
Sbjct: 301 VHGLWRHIPKEFDDYIATPKGNMYRSLHTAVIGPEDKSLEVQIRTYEMHRHSEFGVAAHW 360
Query: 515 LYKE 518
YKE
Sbjct: 361 AYKE 364
>gi|170720403|ref|YP_001748091.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas putida W619]
gi|169758406|gb|ACA71722.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas putida W619]
Length = 746
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/145 (50%), Positives = 92/145 (63%), Gaps = 14/145 (9%)
Query: 381 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 440
L+ ELL + G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVNADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 441 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 500
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEVRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 501 KMHEYAEHGLAAHWLYKETGNKLQS 525
MHE AE G+ AHW YK T K S
Sbjct: 353 GMHEEAELGVCAHWRYKGTDVKPSS 377
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 72/143 (50%), Gaps = 17/143 (11%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------------- 193
D++VA +++ V + +L + + FG V+KL+ GV R++ I+
Sbjct: 83 DSLVAAVIYRSVREGKVTLAEVGQRFGPVVSKLIDGVLRMAAISASLSPRQSLVLGSQAQ 142
Query: 194 -QLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+ LR+ V+ + +LA+R +R + + K VA+E I+ LA RLG+
Sbjct: 143 VENLRKMLVAMVDDVRVALIKLAERTCAIRAVKSADDEKRLRVAREVFDIYAPLAHRLGI 202
Query: 253 WALKAELEDLCFAVLQPQIFRKM 275
+K ELEDL F L+P ++++
Sbjct: 203 GHIKWELEDLSFRYLEPDQYKQI 225
>gi|402698898|ref|ZP_10846877.1| GTP pyrophosphokinase [Pseudomonas fragi A22]
Length = 750
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/132 (52%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQS 525
W YK T K S
Sbjct: 366 WRYKGTDVKAGS 377
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 73/145 (50%), Gaps = 21/145 (14%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA IL+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLVAAILYRCVREGQVQLPAVSQRFGPVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 210 GHEE-------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 250
G E LA+R +R + P K VA+E I+ LA RL
Sbjct: 141 GQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNAPDEKRNRVAREVFDIYAPLAHRL 200
Query: 251 GLWALKAELEDLCFAVLQPQIFRKM 275
G+ +K ELEDL F L+P+ ++++
Sbjct: 201 GIGHIKWELEDLSFRYLEPEQYKQI 225
>gi|312962345|ref|ZP_07776836.1| (p)ppGpp synthetase I (GTP pyrophosphokinase) [Pseudomonas
fluorescens WH6]
gi|311283272|gb|EFQ61862.1| (p)ppGpp synthetase I (GTP pyrophosphokinase) [Pseudomonas
fluorescens WH6]
Length = 762
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/132 (52%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 270 GVDADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEMRDCYTALG 320
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 321 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 380
Query: 514 WLYKETGNKLQS 525
W YK T K S
Sbjct: 381 WRYKGTDVKAGS 392
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 91/195 (46%), Gaps = 26/195 (13%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D+++A +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 98 DSLIAAVLYRGVREGHIPLATVGQRFGSVVAKLIDGVLRMAAISASL--SPRQSLVLGTQ 155
Query: 210 GHEE-------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 250
G E LA+R +R + K VA+E I+ LA RL
Sbjct: 156 GQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAHRL 215
Query: 251 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTAS 310
G+ +K ELEDL F L+P +++ +A++ R R+ R I+ ++ + +
Sbjct: 216 GIGHIKWELEDLSFRYLEPDQYKQ----IATLLHER-RLDRERFISDVMGQLRSELQATG 270
Query: 311 DDESFTTFDEHVLSM 325
D + +H+ S+
Sbjct: 271 VDADISGRAKHIYSI 285
>gi|357418302|ref|YP_004931322.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Pseudoxanthomonas spadix BD-a59]
gi|355335880|gb|AER57281.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Pseudoxanthomonas spadix BD-a59]
Length = 712
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/123 (53%), Positives = 83/123 (67%), Gaps = 9/123 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+S R K +YSI+ KM+RK V + +++D RA+R+ V D + CY+ L +VH L
Sbjct: 232 VSGRPKHIYSIWKKMQRKQVALDELFDLRAVRITVSD---------VAQCYAALGVVHAL 282
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI EFDDYI PK +GY+SLHTAV GP G ALEVQIRT +MH AE G+AAHW YKE
Sbjct: 283 WTPIPSEFDDYIARPKANGYRSLHTAVVGPQGRALEVQIRTYEMHAQAELGVAAHWRYKE 342
Query: 519 TGN 521
G
Sbjct: 343 GGG 345
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR ALP + RA+A T I LA+RLG+W LK ELEDL F LQP +R
Sbjct: 136 LARQLARMRAASALPEDQRRALALLTRDIHAPLANRLGIWQLKWELEDLAFRYLQPDTYR 195
Query: 274 KMRADLASMWSPRNRVGYSRRITTIVSS 301
+ A L NR G R I + ++
Sbjct: 196 AIAAQLDD-----NRAGRERYIEKVKAT 218
>gi|152980252|ref|YP_001353176.1| GTP pyrophosphokinase [Janthinobacterium sp. Marseille]
gi|151280329|gb|ABR88739.1| GTP pyrophosphokinase [Janthinobacterium sp. Marseille]
Length = 759
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/138 (47%), Positives = 87/138 (63%), Gaps = 9/138 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K ++SI+SK+R K + +YD RA RV+V D ++ CY++L
Sbjct: 255 GIKAEVFGRPKHIFSIWSKLRGKAIEFSDLYDVRAFRVIVDD---------VKTCYTVLG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
I+H +W PI EFDDYI PK +GYQSLHT V DG LEVQ+RT MH++AE+G+AAH
Sbjct: 306 IIHNIWAPIPEEFDDYISRPKSNGYQSLHTIVIAEDGRPLEVQVRTNDMHDFAEYGVAAH 365
Query: 514 WLYKETGNKLQSISSMDE 531
W YKE G S DE
Sbjct: 366 WRYKEAGGSNFSGQKYDE 383
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 75/155 (48%), Gaps = 25/155 (16%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL-LRRH---RRINVN 205
DT +A +L ++ + IEE FG EV LV GV +L ++++ +H R N
Sbjct: 75 DTRIAALLFELATIDPTAADKIEERFGKEVNNLVLGVRQLMRLHEVTFVQHEAARSKNAA 134
Query: 206 QGTLGHEELADRL-----HNMRTIYA----------------LPPAKARAVAQETLLIWC 244
Q E+ ++ +MR + + +++ A+ET ++
Sbjct: 135 QEAAAQLEVVRKMLLAMASDMRVVLVRLGTRVTTLRYFADNKVQNERSKQYARETFDLYA 194
Query: 245 SLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 279
LA+RLG+W LK ELEDL F LQP+ ++++ + L
Sbjct: 195 PLANRLGVWQLKWELEDLSFRFLQPEAYKRIASQL 229
>gi|289208234|ref|YP_003460300.1| (p)ppGpp synthetase I SpoT/RelA [Thioalkalivibrio sp. K90mix]
gi|288943865|gb|ADC71564.1| (p)ppGpp synthetase I, SpoT/RelA [Thioalkalivibrio sp. K90mix]
Length = 733
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 101/163 (61%), Gaps = 21/163 (12%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K +YSI+ KM+RK + ++YD RA RV+V + + CY++L
Sbjct: 237 GIQARVFGRPKHIYSIWKKMQRKQTSLDELYDLRATRVIVDE---------LATCYTVLG 287
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH W + EFDDYI NPK +GYQSLHTAV GP+G +EVQIRT++M ++AE G+AAH
Sbjct: 288 IVHNDWRHLPSEFDDYIANPKDNGYQSLHTAVVGPEGKVVEVQIRTREMDDFAELGVAAH 347
Query: 514 WLYKETGNKLQSISSMDESDIEASSSLSK-----DTDDHNPLD 551
W YKE G + Q+++ A SSL + D D N LD
Sbjct: 348 WRYKEGGREDQALN-------RAISSLRQLLEAADNSDQNLLD 383
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 11/117 (9%)
Query: 170 SIEEEFGDEVAKLVAGVSRLSYIN-----------QLLRRHRRINVNQGTLGHEELADRL 218
+++E FGD +A+L V+ L + LRR V+ +LA R+
Sbjct: 91 ALKERFGDSIARLTVNVAALVSRRFEAPVGRPEQAERLRRMLMAMVDDVRAVLIKLAYRV 150
Query: 219 HNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
++R P AR +AQETL + LA+RLG+ LK E+EDL +L+P+ +R++
Sbjct: 151 QHLRLAVKEPDDGARVLAQETLDVIAPLANRLGVGQLKWEMEDLALRILEPETYREI 207
>gi|381401703|ref|ZP_09926596.1| GTP pyrophosphokinase [Kingella kingae PYKK081]
gi|380833262|gb|EIC13137.1| GTP pyrophosphokinase [Kingella kingae PYKK081]
Length = 725
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/127 (49%), Positives = 85/127 (66%), Gaps = 9/127 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ ++ R K +YSI+ KM +K + +YD RA+RV+V ++ CY+ L
Sbjct: 241 GIQCDVAGRPKHIYSIYKKMVKKKLDFDGLYDIRAVRVLVN---------SVSECYTTLG 291
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT +MHE+ E G+AAH
Sbjct: 292 IVHSLWQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGIEVQIRTHEMHEFNEFGVAAH 351
Query: 514 WLYKETG 520
W YKE G
Sbjct: 352 WRYKEGG 358
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 19/145 (13%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGV------SRLSYINQLLRRHRRIN 203
+ V A +L D+ + + E+ G VA LVAG+ + + ++ L R N
Sbjct: 67 EAVAATLLTDISTYCTDWKTQVSEQCGQAVATLVAGIDEVQKLTHFAKVDALATPEERAN 126
Query: 204 ------------VNQGTLGHEELADRLHNMRTIYALPPA-KARAVAQETLLIWCSLASRL 250
V+ + +LA R +M+ + P + + RA+A+ETL I+ LA+RL
Sbjct: 127 QAETMRKMLLAMVSDIRVVLIKLALRTRSMQYLSQTPDSPQKRALAKETLDIFAPLANRL 186
Query: 251 GLWALKAELEDLCFAVLQPQIFRKM 275
G+W LK +LEDL F P+ ++++
Sbjct: 187 GVWQLKWQLEDLGFRHYNPEEYKRI 211
>gi|37958841|gb|AAP51105.1| putative pyrophosphokinase [uncultured bacterium]
Length = 865
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 89/141 (63%), Gaps = 10/141 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ + R K LYSI+ KM+ K++ I +V+D RALRV+V D I CY+ L
Sbjct: 360 GLNAQVQGRPKHLYSIWKKMQGKNLSIDRVFDVRALRVIVDD---------IPSCYAALS 410
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
H LW P+ EF DYI PKP+GYQSLHT V G D +E+QIR+Q MHE+A+ G+AAH
Sbjct: 411 RAHELWRPMPDEFSDYIARPKPNGYQSLHTVVLGDDDKPIEIQIRSQAMHEHADSGVAAH 470
Query: 514 WLYKETGNK-LQSISSMDESD 533
W YKE G K + ++ ES+
Sbjct: 471 WAYKEAGAKGYAGVQTVGESE 491
Score = 47.8 bits (112), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 87/214 (40%), Gaps = 32/214 (14%)
Query: 87 IVDGVDVTGYPIFNDEQVQKAIA----FAKRAHHGQFRKTGDPYLTHCIHTGRIL-AMLI 141
IVD VD+ P + A+A FA+ GQ TG+ L H +IL +
Sbjct: 124 IVDLVDLD-LPAADGGSAAHALARARVFAEPLLAGQLFDTGENALAHADGVSQILLGIGA 182
Query: 142 PSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQ------- 194
P S + A V A DD I FG + A LVA +L I +
Sbjct: 183 PPSLRAAAYLVYASEYLTTPDDV------IGRAFGADAAALVAHTRKLVQIQRNARDALG 236
Query: 195 -----LLRRHRRINVNQGTLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLL 241
LR + + + L LA RL +R +A+A+E++
Sbjct: 237 DEAYGPLRADQVERIRKMLLAFSRDLRVVLMRLASRLQTLRHYAETKLPCPKALARESMQ 296
Query: 242 IWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
++ LASRLG+ +K E+EDL F L P+ + +
Sbjct: 297 VFAPLASRLGIGQIKWEMEDLSFRFLMPEAYHSI 330
>gi|333374620|ref|ZP_08466460.1| GTP diphosphokinase [Kingella kingae ATCC 23330]
gi|332975258|gb|EGK12158.1| GTP diphosphokinase [Kingella kingae ATCC 23330]
Length = 725
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/127 (49%), Positives = 85/127 (66%), Gaps = 9/127 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ ++ R K +YSI+ KM +K + +YD RA+RV+V ++ CY+ L
Sbjct: 241 GIQCDVAGRPKHIYSIYKKMVKKKLDFDGLYDIRAVRVLVN---------SVSECYTTLG 291
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT +MHE+ E G+AAH
Sbjct: 292 IVHSLWQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGIEVQIRTHEMHEFNEFGVAAH 351
Query: 514 WLYKETG 520
W YKE G
Sbjct: 352 WRYKEGG 358
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 19/145 (13%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGV------SRLSYINQLLRRHRRIN 203
+ V A +L D+ + + E+ G VA LVAG+ + + ++ L R N
Sbjct: 67 EAVAATLLTDISTYCTDWKTQVSEQCGQAVATLVAGIDEVQKLTHFAKVDALATPEERAN 126
Query: 204 ------------VNQGTLGHEELADRLHNMRTIYALPPA-KARAVAQETLLIWCSLASRL 250
V+ + +LA R +M+ + P + + R +A+ETL I+ LA+RL
Sbjct: 127 QAETMRKMLLAMVSDIRVVLIKLALRTRSMQYLSQTPDSPQKRVLAKETLDIFAPLANRL 186
Query: 251 GLWALKAELEDLCFAVLQPQIFRKM 275
G+W LK +LEDL F P+ ++++
Sbjct: 187 GVWQLKWQLEDLGFRHYNPEEYKRI 211
>gi|302185507|ref|ZP_07262180.1| RelA/SpoT protein [Pseudomonas syringae pv. syringae 642]
Length = 599
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 107 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 157
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 158 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 217
Query: 514 WLYKETGNKLQSISSMDESDI 534
W YK G ++S S+ E I
Sbjct: 218 WRYK--GTDVKSGSNHYEEKI 236
Score = 43.1 bits (100), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 213 ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 272
+LA+R +R + K VA+E I+ LA RLG+ +K ELEDL F L+P +
Sbjct: 15 KLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRLGIGHIKWELEDLSFRYLEPDQY 74
Query: 273 RKM 275
+++
Sbjct: 75 KQI 77
>gi|359779979|ref|ZP_09283206.1| GTP pyrophosphokinase [Pseudomonas psychrotolerans L19]
gi|359372595|gb|EHK73159.1| GTP pyrophosphokinase [Pseudomonas psychrotolerans L19]
Length = 746
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIKSDISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEVRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPREFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQSISSMDESDI 534
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSASNHYEEKI 384
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 95/198 (47%), Gaps = 21/198 (10%)
Query: 97 PIFNDEQVQKAIAFAKRA--HHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVA 154
P + E + A FA+ A + GQ T T HTG +A ++ + K D+++A
Sbjct: 30 PNLDRETLLDACGFARTAEENSGQVEHTWAEG-TSSFHTGLEMAEIL-ADLKLDQDSLIA 87
Query: 155 GILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLL-----------------R 197
I++ V + +L S E FG VAKL+ GV R++ I++ L R
Sbjct: 88 AIVYRAVREGKATLESAAEHFGPVVAKLIEGVLRMAAISESLNPRKSMVLGSQTQVDNLR 147
Query: 198 RHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKA 257
R V+ + +LA+R +R + + VA+E I+ LA RLG+ +K
Sbjct: 148 RMLVAMVDDVRVALIKLAERTCAIRAVKNATEERRNRVAREVADIYAPLAHRLGIGHIKW 207
Query: 258 ELEDLCFAVLQPQIFRKM 275
ELEDL F L+PQ ++++
Sbjct: 208 ELEDLSFRYLEPQQYKQI 225
>gi|424924370|ref|ZP_18347731.1| (p)ppGpp synthetase [Pseudomonas fluorescens R124]
gi|404305530|gb|EJZ59492.1| (p)ppGpp synthetase [Pseudomonas fluorescens R124]
Length = 747
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQSISSMDESDI 534
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 21/145 (14%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLVAAVLYRGVREGQIELAAVSQRFGPVVAKLIDGVQRMAAISASL--SPRQSMVMGTQ 140
Query: 210 GHEE-------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 250
G E LA+R +R + K VA+E I+ LA RL
Sbjct: 141 GQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAHRL 200
Query: 251 GLWALKAELEDLCFAVLQPQIFRKM 275
G+ +K ELEDL F L+P ++++
Sbjct: 201 GIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|398970197|ref|ZP_10683249.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM30]
gi|398140908|gb|EJM29854.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM30]
Length = 747
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQSISSMDESDI 534
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 110/251 (43%), Gaps = 36/251 (14%)
Query: 99 FNDEQVQKAIAFAKRAHHGQFRKT-----GDPYLTHCIHTGRILAMLIPSSGKRAVDTVV 153
+ E +++A FA+ A K G + + ILA L K D++V
Sbjct: 32 LDREALKEACEFAREAEQQSNAKKNLWAEGSGSFSTGLEIAEILADL-----KLDQDSLV 86
Query: 154 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE 213
A +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT G E
Sbjct: 87 AAVLYRGVREGQIELAAVGQRFGPVVAKLIDGVQRMAAISASL--SPRQSMVMGTQGQVE 144
Query: 214 -------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 254
LA+R +R + K VA+E I+ LA RLG+
Sbjct: 145 NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAHRLGIGH 204
Query: 255 LKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDES 314
+K ELEDL F L+P +++ +A + R R+ R I+ +++ + + D
Sbjct: 205 IKWELEDLSFRYLEPDQYKQ----IAKLLHER-RLDRERFISDVMTQLKDELQATGVDAD 259
Query: 315 FTTFDEHVLSM 325
+ +H+ S+
Sbjct: 260 ISGRAKHIYSI 270
>gi|398991852|ref|ZP_10694940.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM24]
gi|399015483|ref|ZP_10717753.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM16]
gi|398108446|gb|EJL98407.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM16]
gi|398136809|gb|EJM25888.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM24]
Length = 747
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQSISSMDESDI 534
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 90/201 (44%), Gaps = 31/201 (15%)
Query: 99 FNDEQVQKAIAFAKRAHHGQFRKT-----GDPYLTHCIHTGRILAMLIPSSGKRAVDTVV 153
+ E +++A FA+ A K G + + ILA L K D++V
Sbjct: 32 LDREALKEACEFAREAEQQSNAKKNLWAEGSGSFSTGLEIAEILADL-----KLDQDSLV 86
Query: 154 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE 213
A +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT G E
Sbjct: 87 AAVLYRGVREGQIELAAVGQRFGPVVAKLIDGVQRMAAISASL--SPRQSMVMGTQGQVE 144
Query: 214 -------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 254
LA+R +R + K VA+E I+ LA RLG+
Sbjct: 145 NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAHRLGIGH 204
Query: 255 LKAELEDLCFAVLQPQIFRKM 275
+K ELEDL F L+P ++++
Sbjct: 205 IKWELEDLSFRYLEPDQYKQI 225
>gi|398850507|ref|ZP_10607212.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM80]
gi|398248721|gb|EJN34123.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM80]
Length = 747
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQSISSMDESDI 534
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 90/201 (44%), Gaps = 31/201 (15%)
Query: 99 FNDEQVQKAIAFAKRAHHGQFRKT-----GDPYLTHCIHTGRILAMLIPSSGKRAVDTVV 153
+ E +++A FA+ A K G + + ILA L K D++V
Sbjct: 32 LDREALKEACEFAREAEQQSNAKKNLWAEGSGSFSTGLEIAEILADL-----KLDQDSLV 86
Query: 154 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE 213
A +L+ V + L +I + FG VAKL+ GV R++ I+ L R ++ GT G E
Sbjct: 87 AAVLYRGVREGQIELAAIGQRFGPVVAKLIDGVQRMAAISASL--SPRQSMVMGTQGQVE 144
Query: 214 -------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 254
LA+R +R + K VA+E I+ LA RLG+
Sbjct: 145 NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAHRLGIGH 204
Query: 255 LKAELEDLCFAVLQPQIFRKM 275
+K ELEDL F L+P ++++
Sbjct: 205 IKWELEDLSFRYLEPDQYKQI 225
>gi|351729669|ref|ZP_08947360.1| (p)ppGpp synthetase I SpoT/RelA [Acidovorax radicis N35]
Length = 737
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/140 (48%), Positives = 89/140 (63%), Gaps = 10/140 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+ ++ R K +YSI KMR K + +V+D RALRVVV P ++ CY+ L
Sbjct: 249 ISASVQGRPKHIYSIVKKMRGKSLNFDQVFDIRALRVVV---------PTVKDCYAALSW 299
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH + PI EFDDYI PKP+GYQSLHT V+ G +E+QIRTQ MH++AEHG+AAHW
Sbjct: 300 VHEQFKPIVEEFDDYIAKPKPNGYQSLHTIVRDDHGKPIEIQIRTQAMHDHAEHGVAAHW 359
Query: 515 LYKETGNK-LQSISSMDESD 533
YKE G+K +S+ E D
Sbjct: 360 AYKEAGSKGYAGVSATGEYD 379
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 86/193 (44%), Gaps = 24/193 (12%)
Query: 102 EQVQ---KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILH 158
EQV +A AFA+ G+ +G+ L H IL + S +A +V +H
Sbjct: 31 EQVNALSRARAFAEPLMAGETLDSGENTLAHADAVAAILKGIGGSEAMQAASYLVHACIH 90
Query: 159 DVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI--------NVNQGTLG 210
++ E I + FG A L ++L + Q R + NV + L
Sbjct: 91 --LNKPEEV---IAKAFGANFAALAVETTKLMRVQQQARTAEHLEDPAVQTENVRKMLLA 145
Query: 211 HEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 262
LA RL +R A + ++A+E+L ++ LA+RLG+W +K ELEDL
Sbjct: 146 FSRDLRVVMLRLASRLQTLRFHAASKRPVSPSLARESLQVFAPLANRLGIWQVKWELEDL 205
Query: 263 CFAVLQPQIFRKM 275
F L+P ++++
Sbjct: 206 SFRFLEPDTYKEV 218
>gi|398867522|ref|ZP_10622978.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM78]
gi|398236591|gb|EJN22368.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM78]
Length = 747
Score = 137 bits (345), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQSISSMDESDI 534
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 26/195 (13%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLVAAVLYRGVREGQIPLPAVSQRFGPVVAKLIDGVQRMAAISDSL--SPRKSMVMGTQ 140
Query: 210 GHEE-------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 250
G E LA+R +R + K VA+E I+ LA RL
Sbjct: 141 GQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAHRL 200
Query: 251 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTAS 310
G+ +K ELEDL F L+P +++ +A + R R+ R I+ ++S + +
Sbjct: 201 GIGHIKWELEDLSFRYLEPDQYKQ----IAKLLHER-RLDRERFISDVMSQLKNELQATG 255
Query: 311 DDESFTTFDEHVLSM 325
D + +H+ S+
Sbjct: 256 VDADISGRAKHIYSI 270
>gi|398889275|ref|ZP_10643151.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM55]
gi|398189719|gb|EJM76986.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM55]
Length = 747
Score = 137 bits (345), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQSISSMDESDI 534
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 26/195 (13%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA IL+ V + L ++ + FG VAKL+ GV R++ I+ L + + + GT
Sbjct: 83 DSLVAAILYRGVREGQIKLPAVSQRFGPVVAKLIDGVQRMAAISDSLSPRKSLVL--GTQ 140
Query: 210 GHEE-------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 250
G E LA+R +R + K VA+E I+ LA RL
Sbjct: 141 GQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAHRL 200
Query: 251 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTAS 310
G+ +K ELEDL F L+P +++ +A + R R+ R I+ ++S + +
Sbjct: 201 GIGHIKWELEDLSFRYLEPDQYKQ----IAKLLHER-RLDRERFISDVMSQLKNELQATG 255
Query: 311 DDESFTTFDEHVLSM 325
D + +H+ S+
Sbjct: 256 VDADISGRAKHIYSI 270
>gi|418532189|ref|ZP_13098098.1| (p)ppGpp synthetase I, SpoT/RelA [Comamonas testosteroni ATCC
11996]
gi|371450984|gb|EHN64027.1| (p)ppGpp synthetase I, SpoT/RelA [Comamonas testosteroni ATCC
11996]
Length = 743
Score = 137 bits (345), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 89/140 (63%), Gaps = 10/140 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+ ++ R K +YSI KMR K + +++D RA+RV+V P ++ CY+ L
Sbjct: 256 ISASVQGRPKHIYSIVKKMRGKSLSFDQLFDIRAMRVIV---------PTVKDCYAALSW 306
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH + P++ EFDDYI PKP+GYQSLHT V+ G +E+QIRTQ MH++AEHG+AAHW
Sbjct: 307 VHEQFTPLEKEFDDYIAKPKPNGYQSLHTVVRDETGRTIEIQIRTQAMHDHAEHGVAAHW 366
Query: 515 LYKETGNK-LQSISSMDESD 533
YKE G K +S+ E D
Sbjct: 367 AYKEAGTKGYAGVSASSEYD 386
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 87/190 (45%), Gaps = 25/190 (13%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A AFA+ G+ +TG+ LTH IL + S +A +V +H ++
Sbjct: 41 RARAFAEPLIAGEVMETGENTLTHADAVAAILKKIGGSETMQAAIYLVHASVH--LNKPQ 98
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLR------RH------RRINVNQGTLGHEE 213
E I + FGD A L +L + Q R +H + NV + LG
Sbjct: 99 EV---IAKAFGDNFATLAVETIKLIRVQQQAREAELSSQHVDGVATQTENVRKMLLGFSR 155
Query: 214 --------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFA 265
LA RL +R A + ++A+E L ++ LA+RLG+W +K ELEDL F
Sbjct: 156 DLRVVLLRLASRLQTLRYYAAEKSPVSPSIAREALYVFAPLANRLGIWQIKWELEDLAFR 215
Query: 266 VLQPQIFRKM 275
L+P +R++
Sbjct: 216 FLEPDTYRQI 225
>gi|221067473|ref|ZP_03543578.1| (p)ppGpp synthetase I, SpoT/RelA [Comamonas testosteroni KF-1]
gi|220712496|gb|EED67864.1| (p)ppGpp synthetase I, SpoT/RelA [Comamonas testosteroni KF-1]
Length = 743
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 89/140 (63%), Gaps = 10/140 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+ ++ R K +YSI KMR K + +++D RA+RV+V P ++ CY+ L
Sbjct: 256 ISASVQGRPKHIYSIVKKMRGKSLSFDQLFDIRAMRVIV---------PTVKDCYAALSW 306
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH + P++ EFDDYI PKP+GYQSLHT V+ G +E+QIRTQ MH++AEHG+AAHW
Sbjct: 307 VHEQFTPLEKEFDDYIAKPKPNGYQSLHTVVRDETGRTIEIQIRTQAMHDHAEHGVAAHW 366
Query: 515 LYKETGNK-LQSISSMDESD 533
YKE G K +S+ E D
Sbjct: 367 AYKEAGTKGYAGVSASSEYD 386
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 86/190 (45%), Gaps = 25/190 (13%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A AFA+ G+ +TG+ L H IL + S +A +V +H ++
Sbjct: 41 RARAFAEPLIAGEVMETGENTLIHADAVAAILKKIGGSETMQAAIYLVHASVH--LNKPQ 98
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLR------RH------RRINVNQGTLGHEE 213
E I + FGD A L +L + Q R +H + NV + LG
Sbjct: 99 EV---IAKAFGDNFATLAVETIKLIRVQQQARDAELSSQHVDGVATQTENVRKMLLGFSR 155
Query: 214 --------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFA 265
LA RL +R A + ++A+E L ++ LA+RLG+W +K ELEDL F
Sbjct: 156 DLRVVLLRLASRLQTLRYYAAEKSPVSPSIAREALYVFAPLANRLGIWQIKWELEDLAFR 215
Query: 266 VLQPQIFRKM 275
L+P +R++
Sbjct: 216 FLEPDTYRQI 225
>gi|264678112|ref|YP_003278019.1| (p)ppGpp synthetase I SpoT/RelA [Comamonas testosteroni CNB-2]
gi|299533684|ref|ZP_07047058.1| (p)ppGpp synthetase I, SpoT/RelA [Comamonas testosteroni S44]
gi|262208625|gb|ACY32723.1| (p)ppGpp synthetase I, SpoT/RelA [Comamonas testosteroni CNB-2]
gi|298718406|gb|EFI59389.1| (p)ppGpp synthetase I, SpoT/RelA [Comamonas testosteroni S44]
Length = 743
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 89/140 (63%), Gaps = 10/140 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+ ++ R K +YSI KMR K + +++D RA+RV+V P ++ CY+ L
Sbjct: 256 ISASVQGRPKHIYSIVKKMRGKSLSFDQLFDIRAMRVIV---------PTVKDCYAALSW 306
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH + P++ EFDDYI PKP+GYQSLHT V+ G +E+QIRTQ MH++AEHG+AAHW
Sbjct: 307 VHEQFTPLEKEFDDYIAKPKPNGYQSLHTVVRDETGRTIEIQIRTQAMHDHAEHGVAAHW 366
Query: 515 LYKETGNK-LQSISSMDESD 533
YKE G K +S+ E D
Sbjct: 367 AYKEAGTKGYAGVSASSEYD 386
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 87/190 (45%), Gaps = 25/190 (13%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A AFA+ G+ +TG+ LTH IL + S +A +V +H ++
Sbjct: 41 RARAFAEPLIAGEVMETGENTLTHADAVAAILKKIGGSETMQAAIYLVHASVH--LNKPQ 98
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLR------RH------RRINVNQGTLGHEE 213
E I + FGD A L +L + Q R +H + NV + LG
Sbjct: 99 EV---IAKAFGDNFATLAVETIKLIRVQQQARDAELSSQHVDGVATQTENVRKMLLGFSR 155
Query: 214 --------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFA 265
LA RL +R A + ++A+E L ++ LA+RLG+W +K ELEDL F
Sbjct: 156 DLRVVLLRLASRLQTLRYYAAEKSPVSPSIAREALYVFAPLANRLGIWQIKWELEDLAFR 215
Query: 266 VLQPQIFRKM 275
L+P +R++
Sbjct: 216 FLEPDTYRQI 225
>gi|398938103|ref|ZP_10667592.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM41(2012)]
gi|398166296|gb|EJM54397.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM41(2012)]
Length = 747
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQSISSMDESDI 534
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 94/200 (47%), Gaps = 25/200 (12%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYL--THCIHTGRILAMLIPSSGKRAVDTVVA 154
P + E +++A FA RA Q + + T TG +A ++ + K D++VA
Sbjct: 30 PALDREALKEACEFA-RASEQQANAAKNLWSEGTSSFRTGLEIAEIL-ADLKLDQDSLVA 87
Query: 155 GILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE- 213
IL+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT G E
Sbjct: 88 AILYRGVREGQIELPAVSQRFGPVVAKLIDGVLRMAAISASL--SPRQSLVLGTQGQVEN 145
Query: 214 ------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 255
LA+R +R + K VA+E I+ LA RLG+ +
Sbjct: 146 LRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAHRLGIGHI 205
Query: 256 KAELEDLCFAVLQPQIFRKM 275
K ELEDL F L+P ++++
Sbjct: 206 KWELEDLSFRYLEPDQYKQI 225
>gi|398879075|ref|ZP_10634177.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM67]
gi|398884173|ref|ZP_10639114.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM60]
gi|398195242|gb|EJM82292.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM60]
gi|398197436|gb|EJM84415.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM67]
Length = 747
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 86/129 (66%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSMHEEAELGVCAH 365
Query: 514 WLYKETGNK 522
W YK T K
Sbjct: 366 WRYKGTDVK 374
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 26/195 (13%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLVAAVLYRGVREGQIQLPAVSQRFGPVVAKLIDGVQRMAAISDSL--SPRKSMVMGTQ 140
Query: 210 GHEE-------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 250
G E LA+R +R + K VA+E I+ LA RL
Sbjct: 141 GQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAHRL 200
Query: 251 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTAS 310
G+ +K ELEDL F L+P +++ +A + R R+ R I +++ ++ +
Sbjct: 201 GIGHIKWELEDLSFRYLEPDQYKQ----IAKLLHER-RLDRERFIADVMNQLKVELQATG 255
Query: 311 DDESFTTFDEHVLSM 325
D + +H+ S+
Sbjct: 256 VDADISGRAKHIYSI 270
>gi|399001092|ref|ZP_10703811.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM18]
gi|398128549|gb|EJM17936.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM18]
Length = 747
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 100/165 (60%), Gaps = 19/165 (11%)
Query: 378 EEALEKELLISTS--------YIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARAL 429
E L++E IS + G++ +S R K +YSI+ KM+RK + ++YD RA+
Sbjct: 231 ERRLDRERFISDVMTQLKNELHATGVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAV 290
Query: 430 RVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD 489
RV+V P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+
Sbjct: 291 RVLV---------PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPE 341
Query: 490 GSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDI 534
G LEVQIRT MHE AE G+ AHW YK G ++S S+ E I
Sbjct: 342 GKVLEVQIRTHAMHEEAELGVCAHWRYK--GTDVKSGSNHYEEKI 384
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 21/145 (14%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLVAAVLYRGVREGQIQLPAVSQRFGPLVAKLIDGVQRMAAISDSL--SPRKSMVMGTQ 140
Query: 210 GHEE-------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 250
G E LA+R +R + K VA+E I+ LA RL
Sbjct: 141 GQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAHRL 200
Query: 251 GLWALKAELEDLCFAVLQPQIFRKM 275
G+ +K ELEDL F L+P ++++
Sbjct: 201 GIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|94502135|ref|ZP_01308636.1| GTP pyrophosphokinase [Bermanella marisrubri]
gi|94425737|gb|EAT10744.1| GTP pyrophosphokinase [Oceanobacter sp. RED65]
Length = 747
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 101/169 (59%), Gaps = 15/169 (8%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+E + R K +YSI+ KM RK++ +VYD RA+R++V P ++ CY+ L
Sbjct: 255 GIECDVQGRAKHIYSIWRKMNRKNIDFGQVYDIRAVRILV---------PEVKDCYAALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
I H W I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 ITHTFWKHIPHEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTFDMHEDAELGVCAH 365
Query: 514 WLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLK 562
WLYK T +SS D E S L + + H+ L DL + SL+
Sbjct: 366 WLYKGT-----DVSSKDNGYEEKISWLRQVLEWHDEL-GDLGELMGSLR 408
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 73/143 (51%), Gaps = 18/143 (12%)
Query: 151 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 210
+V+A I++ V + SL +E+EFG+E+AKL+ GV R++ I Q R + Q
Sbjct: 83 SVIAAIIYRPVREGRLSLEKVEKEFGEEIAKLIDGVLRMAAITQAQSASRLKVLGQSEAQ 142
Query: 211 HE------------------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
E +LA+R +R + P + VA+E ++ LA RLG+
Sbjct: 143 VEHIRKMLVAMIDDVRVALIKLAERTSVIRVVKNAPEERRMKVAREVFDVYAPLAHRLGI 202
Query: 253 WALKAELEDLCFAVLQPQIFRKM 275
+K ELEDL F L+P+ ++++
Sbjct: 203 GHIKWELEDLSFRYLEPEAYKQI 225
>gi|407363204|ref|ZP_11109736.1| (p)ppGpp synthetase SpoT/RelA [Pseudomonas mandelii JR-1]
Length = 747
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQSISSMDESDI 534
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 26/195 (13%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLVAAVLYRGVREGQIELPAVSQRFGPVVAKLIDGVLRMAAISASL--SPRQSLVLGTQ 140
Query: 210 GHEE-------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 250
G E LA+R +R + K VA+E I+ LA RL
Sbjct: 141 GQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAHRL 200
Query: 251 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTAS 310
G+ +K ELEDL F L+P +++ +A + R R+ R I +++ ++ +
Sbjct: 201 GIGHIKWELEDLSFRYLEPDQYKQ----IAKLLHER-RLDRERFIADVMNQLKVELQATG 255
Query: 311 DDESFTTFDEHVLSM 325
D + +H+ S+
Sbjct: 256 VDADISGRAKHIYSI 270
>gi|389682225|ref|ZP_10173568.1| GTP diphosphokinase [Pseudomonas chlororaphis O6]
gi|388554099|gb|EIM17349.1| GTP diphosphokinase [Pseudomonas chlororaphis O6]
Length = 747
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 86/129 (66%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNK 522
W YK T K
Sbjct: 366 WRYKGTDVK 374
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 92/193 (47%), Gaps = 22/193 (11%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------------- 193
D++VA +L+ V + L ++ + FG VAKL+ GV R++ I+
Sbjct: 83 DSLVAAVLYRGVREGQIPLPAVSQRFGPVVAKLIDGVLRMAAISASLSPRQSLVLGTQAQ 142
Query: 194 -QLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+ LR+ V+ + +LA+R +R + K VA+E I+ LA RLG+
Sbjct: 143 VENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRLGI 202
Query: 253 WALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDD 312
+K ELEDL F L+P+ +++ +A + R R+ R I+ +++ + + D
Sbjct: 203 GHIKWELEDLSFRYLEPEQYKQ----IAKLLHER-RLDRERFISDVMNQLQNELQATGVD 257
Query: 313 ESFTTFDEHVLSM 325
+ +H+ S+
Sbjct: 258 ADISGRAKHIYSI 270
>gi|119897979|ref|YP_933192.1| GTP diphosphokinase [Azoarcus sp. BH72]
gi|119670392|emb|CAL94305.1| GTP diphosphokinase [Azoarcus sp. BH72]
Length = 733
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/125 (52%), Positives = 86/125 (68%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K +YSI++KMR K + +VYD RALRV+V + ++ CY++L
Sbjct: 246 GIKAEIQGRPKHIYSIYNKMRAKRLDFSQVYDIRALRVLVDE---------VKDCYTVLG 296
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH++W PI+ EFDDYI PK + YQSLHTAV DG ALEVQIRT MH +AE G+AAH
Sbjct: 297 LVHQIWQPINKEFDDYITKPKGNNYQSLHTAVLAGDGRALEVQIRTHDMHRHAELGVAAH 356
Query: 514 WLYKE 518
W YKE
Sbjct: 357 WRYKE 361
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 92/193 (47%), Gaps = 29/193 (15%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGIL---HDV 160
+QKA+ A + G TG+ TH + T LI +S + DT +A +L ++
Sbjct: 32 IQKALDLAADIYEGHVLGTGESVWTHAMGTA-----LIAASLRLDADTRIAALLFSANEY 86
Query: 161 VDDACESLGSIEEEFGDEVAKLVAGVSRLSYI------------------NQLLRRHRRI 202
+DDA IEE FG VA+LV G+ +L+ + ++LR+
Sbjct: 87 LDDAPTL---IEERFGGSVARLVEGLRKLNGLRVVTRMTATASAPEIRAQTEVLRKMLLA 143
Query: 203 NVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 262
V + LA R +R + +A+E+L I+ LA+RLG+W LK ELEDL
Sbjct: 144 MVEDIRVVLIRLASRTQTLRYYADTKSENRQDIARESLDIYAPLANRLGVWQLKWELEDL 203
Query: 263 CFAVLQPQIFRKM 275
F L+P ++++
Sbjct: 204 SFRFLEPDTYKRI 216
>gi|168052096|ref|XP_001778487.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670085|gb|EDQ56660.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 546
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 108/191 (56%), Gaps = 25/191 (13%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
Y F D V KA A+ AH GQFR+ GD +L HC+ T ILA ++G + V AG
Sbjct: 25 YKAFYDPIVVKAFRMAEEAHKGQFRRNGDMFLAHCVETALILA----ATGVGNI-VVAAG 79
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEL- 214
+LHD +DD+ SL + G+ VA LV GVS+LS +QL R N TL + L
Sbjct: 80 LLHDAIDDSNLSLELLRCSLGENVASLVIGVSKLSEFSQLARD---CNTVCDTLEADRLR 136
Query: 215 ----------------ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 258
ADRLHN+RT+ ALP K +A+ETL I+ LA+RLG+W+ KAE
Sbjct: 137 TMILAMVDVRVVLIKIADRLHNLRTLEALPSHKQIGIAKETLEIFAPLANRLGIWSWKAE 196
Query: 259 LEDLCFAVLQP 269
+EDLCF L+P
Sbjct: 197 MEDLCFKCLKP 207
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 99/162 (61%), Gaps = 19/162 (11%)
Query: 368 GIALTSLVACEEALEKELLISTSYIPGME-VTLSSRLKSLYSIFSKMRRKDVGIHKVYDA 426
G+ ++S+ +EAL + G++ + L R K+LYS++ KM +K ++ D
Sbjct: 224 GLVMSSIRDLDEALR---------VGGVQFIDLCGRPKNLYSVYKKMMKKKRSPDEILDV 274
Query: 427 RALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ 486
R LR++V D+ + CY L++VH+LW I G+ DYIV+ KP+GY+SLHT V
Sbjct: 275 RGLRLIVTDE---------ESCYQALEVVHQLWRCIPGKTKDYIVDSKPNGYKSLHTVVI 325
Query: 487 GPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISS 528
G DG LEVQIRT KMH AE+GLAAHW YKE ++ + SS
Sbjct: 326 GSDGYPLEVQIRTMKMHHQAEYGLAAHWRYKEDNSEHSAFSS 367
>gi|398873055|ref|ZP_10628321.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM74]
gi|398200671|gb|EJM87580.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM74]
Length = 747
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQSISSMDESDI 534
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 26/195 (13%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA IL+ V + L ++ + FG V+KL+ GV R++ I+ L + + + GT
Sbjct: 83 DSLVAAILYRGVREGQIKLPAVSQRFGPVVSKLIDGVQRMAAISDSLSPRKSLVL--GTQ 140
Query: 210 GHEE-------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 250
G E LA+R +R + K VA+E I+ LA RL
Sbjct: 141 GQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAHRL 200
Query: 251 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTAS 310
G+ +K ELEDL F L+P +++ +A + R R+ R I+ ++S + +
Sbjct: 201 GIGHIKWELEDLSFRYLEPDQYKQ----IAKLLHER-RLDRERFISDVMSQLKNELQATG 255
Query: 311 DDESFTTFDEHVLSM 325
D + +H+ S+
Sbjct: 256 VDADISGRAKHIYSI 270
>gi|426411003|ref|YP_007031102.1| GTP diphosphokinase [Pseudomonas sp. UW4]
gi|426269220|gb|AFY21297.1| GTP diphosphokinase [Pseudomonas sp. UW4]
Length = 747
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQSISSMDESDI 534
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 26/195 (13%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA IL+ V + L ++ + FG VAKL+ GV R++ I+ L + + + GT
Sbjct: 83 DSLVAAILYRGVREGQIKLPAVSQRFGPVVAKLIDGVLRMAAISDSLSPRKSLVL--GTQ 140
Query: 210 GHEE-------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 250
G E LA+R +R + K VA+E I+ LA RL
Sbjct: 141 GQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAHRL 200
Query: 251 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTAS 310
G+ +K ELEDL F L+P +++ +A + R R+ R I+ ++S + +
Sbjct: 201 GIGHIKWELEDLSFRYLEPDQYKQ----IAKLLHER-RLDRERFISDVMSQLKNELQATG 255
Query: 311 DDESFTTFDEHVLSM 325
D + +H+ S+
Sbjct: 256 VDADISGRAKHIYSI 270
>gi|398929740|ref|ZP_10664144.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM48]
gi|398952956|ref|ZP_10675074.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM33]
gi|398154366|gb|EJM42839.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM33]
gi|398166469|gb|EJM54564.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM48]
Length = 747
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQSISSMDESDI 534
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 26/195 (13%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA IL+ V + L ++ + FG VAKL+ GV R++ I+ L + + + GT
Sbjct: 83 DSLVAAILYRGVREGQIKLPAVSQRFGPVVAKLIDGVQRMAAISDSLSPRKSLVL--GTQ 140
Query: 210 GHEE-------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 250
G E LA+R +R + K VA+E I+ LA RL
Sbjct: 141 GQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAHRL 200
Query: 251 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTAS 310
G+ +K ELEDL F L+P +++ +A + R R+ R I+ ++S + +
Sbjct: 201 GIGHIKWELEDLSFRYLEPDQYKQ----IAKLLHER-RLDRERFISDVMSQLKNELQATG 255
Query: 311 DDESFTTFDEHVLSM 325
D + +H+ S+
Sbjct: 256 VDADISGRAKHIYSI 270
>gi|398904229|ref|ZP_10652153.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM50]
gi|398176171|gb|EJM63901.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM50]
Length = 747
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQSISSMDESDI 534
W YK G ++S S+ E I
Sbjct: 366 WKYK--GTDVKSGSNHYEEKI 384
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 21/145 (14%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLVAAVLYRGVREGQIQLPAVSQRFGPVVAKLIDGVLRMAAISASL--SPRQSLVLGTQ 140
Query: 210 GHEE-------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 250
G E LA+R +R + K VA+E I+ LA RL
Sbjct: 141 GQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAHRL 200
Query: 251 GLWALKAELEDLCFAVLQPQIFRKM 275
G+ +K ELEDL F L+P ++++
Sbjct: 201 GIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|398839672|ref|ZP_10596917.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM102]
gi|398112302|gb|EJM02165.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM102]
Length = 747
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQSISSMDESDI 534
W YK G ++S S+ E I
Sbjct: 366 WKYK--GTDVKSGSNHYEEKI 384
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 21/145 (14%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLVAAVLYRGVREGQIQLPTVSQRFGPVVAKLIDGVLRMAAISASL--SPRQSLVLGTQ 140
Query: 210 GHEE-------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 250
G E LA+R +R + K VA+E I+ LA RL
Sbjct: 141 GQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAHRL 200
Query: 251 GLWALKAELEDLCFAVLQPQIFRKM 275
G+ +K ELEDL F L+P ++++
Sbjct: 201 GIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|399008255|ref|ZP_10710732.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM17]
gi|425900909|ref|ZP_18877500.1| GTP diphosphokinase [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
gi|397883302|gb|EJK99788.1| GTP diphosphokinase [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
gi|398117184|gb|EJM06937.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM17]
Length = 747
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 86/129 (66%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNK 522
W YK T K
Sbjct: 366 WRYKGTDVK 374
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 92/193 (47%), Gaps = 22/193 (11%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------------- 193
D++VA +L+ V + L ++ + FG VAKL+ GV R++ I+
Sbjct: 83 DSLVAAVLYRGVREGQIPLPAVSQRFGPVVAKLIDGVLRMAAISASLSPRQSLVLGTQAQ 142
Query: 194 -QLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+ LR+ V+ + +LA+R +R + K VA+E I+ LA RLG+
Sbjct: 143 VENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRLGI 202
Query: 253 WALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDD 312
+K ELEDL F L+P+ +++ +A + R R+ R I+ +++ + R D
Sbjct: 203 GHIKWELEDLSFRYLEPEQYKQ----IAKLLHER-RLDRERFISDVMNQLQNELRATGVD 257
Query: 313 ESFTTFDEHVLSM 325
+ +H+ S+
Sbjct: 258 ADISGRAKHIYSI 270
>gi|398914094|ref|ZP_10656796.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM49]
gi|398179113|gb|EJM66734.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM49]
Length = 747
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 86/129 (66%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNK 522
W YK T K
Sbjct: 366 WRYKGTDVK 374
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 26/195 (13%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA IL+ V + L ++ + FG VAKL+ GV R++ I+ L + + + GT
Sbjct: 83 DSLVAAILYRGVREGQIKLPAVSQRFGPVVAKLIDGVQRMAAISDSLSPRKSLVL--GTQ 140
Query: 210 GHEE-------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 250
G E LA+R +R + K VA+E I+ LA RL
Sbjct: 141 GQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAHRL 200
Query: 251 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTAS 310
G+ +K ELEDL F L+P +++ +A + R R+ R I+ ++S + +
Sbjct: 201 GIGHIKWELEDLSFRYLEPDQYKQ----IAKLLHER-RLDRERFISDVMSQLKNELQATG 255
Query: 311 DDESFTTFDEHVLSM 325
D + +H+ S+
Sbjct: 256 VDADISGRAKHIYSI 270
>gi|398861459|ref|ZP_10617088.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM79]
gi|398233120|gb|EJN19064.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM79]
Length = 747
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQSISSMDESDI 534
W YK G ++S S+ E I
Sbjct: 366 WKYK--GTDVKSGSNHYEEKI 384
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 21/145 (14%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLVAAVLYRGVREGQIQLPAVSQRFGPVVAKLIDGVLRMAAISASL--SPRQSLVLGTQ 140
Query: 210 GHEE-------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 250
G E LA+R +R + K VA+E I+ LA RL
Sbjct: 141 GQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAHRL 200
Query: 251 GLWALKAELEDLCFAVLQPQIFRKM 275
G+ +K ELEDL F L+P ++++
Sbjct: 201 GIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|89900856|ref|YP_523327.1| (p)ppGpp synthetase I SpoT/RelA [Rhodoferax ferrireducens T118]
gi|89345593|gb|ABD69796.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Rhodoferax ferrireducens T118]
Length = 751
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 83/129 (64%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
GM VT+ R K ++SI KMR K + +V+D RALR+VV D I CY+ L
Sbjct: 259 GMSVTVQGRPKHIFSIVKKMRGKSLAFDQVHDIRALRIVVAD---------IADCYAALS 309
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
VH + PI EFDDYI PK +GYQSLHT V+ G +E+QIRTQ MH++AEHG+AAH
Sbjct: 310 WVHSQFTPIAEEFDDYIAKPKANGYQSLHTVVRDAAGLPIEIQIRTQAMHDHAEHGVAAH 369
Query: 514 WLYKETGNK 522
W YKE G K
Sbjct: 370 WAYKEAGVK 378
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 83/201 (41%), Gaps = 40/201 (19%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A AFA+ + TG+ L H IL ++ S +A +V AC
Sbjct: 38 RARAFAEPLLASETLDTGENTLAHADAVAAILRIIGGSEAMQAASYLVY---------AC 88
Query: 166 ESLGSIEE----EFGDEVAKLVAGVSRLSYINQLLRRHR--------RINVNQGTLGHEE 213
+ L +E FGD A L ++L + + R+ + I + Q E
Sbjct: 89 DHLNKPQEVIAKAFGDNFAALAVETTKLVRVQRQARQAQVASERAATGIPMAQTAAAQTE 148
Query: 214 -------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 254
LA RL +R A A VA+E L ++ LA+RLG+W
Sbjct: 149 NVRKMLLAFSRDLRVVMLRLASRLQTLRFFAAARQAAPPGVAREALQVFAPLANRLGIWE 208
Query: 255 LKAELEDLCFAVLQPQIFRKM 275
+K E+EDL F L+P ++R++
Sbjct: 209 IKWEMEDLAFRFLEPDVYRQV 229
>gi|398998667|ref|ZP_10701435.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM21]
gi|398119732|gb|EJM09413.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM21]
Length = 747
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQSISSMDESDI 534
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 92/199 (46%), Gaps = 23/199 (11%)
Query: 97 PIFNDEQVQKAIAFAKRA-HHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
P + E +++A FA+ + K T TG +A ++ + K D++VA
Sbjct: 30 PALDREALKEACEFARMSEQQANAAKNLWSEGTSSFRTGLEIAEIL-ADLKLDQDSLVAA 88
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE-- 213
IL+ V + L ++ + FG VAKL+ GV R++ I+ L + + + GT G E
Sbjct: 89 ILYRGVREGQILLPAVSQRFGPVVAKLIDGVQRMAAISDSLSPRKSMVL--GTQGQVENL 146
Query: 214 -----------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 256
LA+R +R + K VA+E I+ LA RLG+ +K
Sbjct: 147 RKMLVAMVDDVRVALIKLAERTCAIRAVKTAGDEKRNQVAREVFDIYAPLAHRLGIGHIK 206
Query: 257 AELEDLCFAVLQPQIFRKM 275
ELEDL F L+P ++++
Sbjct: 207 WELEDLSFRYLEPDQYKQI 225
>gi|388258655|ref|ZP_10135830.1| GTP pyrophosphokinase [Cellvibrio sp. BR]
gi|387937414|gb|EIK43970.1| GTP pyrophosphokinase [Cellvibrio sp. BR]
Length = 748
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/150 (47%), Positives = 98/150 (65%), Gaps = 11/150 (7%)
Query: 375 VACEEALEK--ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 432
+A +E ++K E L S G+E ++ R K +YSI+ KM+RK + +VYD RA+R++
Sbjct: 238 LARQEYIDKLLERLRSELKKAGIEGSVGGRAKHIYSIWRKMQRKGIPFSQVYDIRAVRIL 297
Query: 433 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 492
V P ++ CY++L IVH LW I EFDDYI +PK +GY+SLHTAV GP+
Sbjct: 298 V---------PTVRDCYAVLGIVHSLWRNIPHEFDDYIASPKENGYRSLHTAVWGPENKV 348
Query: 493 LEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
LE+QIRTQ+MHE +E G+ AHW YK T K
Sbjct: 349 LEIQIRTQEMHEESELGVCAHWRYKGTDTK 378
Score = 62.8 bits (151), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 19/145 (13%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHR-RINVNQGT 208
D +VA IL+ V + +L ++ FG+ VAKLV GV R++ I+ H R+ +Q
Sbjct: 85 DALVAAILYRAVREHKITLVELQNRFGETVAKLVKGVLRMAAISYQRNEHEDRVLGSQAV 144
Query: 209 LGHEE------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 250
E+ LA+R +R++ + R VA+E I+ LA RL
Sbjct: 145 EQAEKIRKMLVSMVDDVRVALIKLAERTCAIRSVKNAEADRRRQVAREVADIYAPLAHRL 204
Query: 251 GLWALKAELEDLCFAVLQPQIFRKM 275
G+ +K ELEDL F LQP+ ++++
Sbjct: 205 GIGHIKWELEDLSFRYLQPEDYKRI 229
>gi|365093453|ref|ZP_09330518.1| (p)ppGpp synthetase I SpoT/RelA [Acidovorax sp. NO-1]
gi|363414333|gb|EHL21483.1| (p)ppGpp synthetase I SpoT/RelA [Acidovorax sp. NO-1]
Length = 737
Score = 137 bits (344), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 68/140 (48%), Positives = 89/140 (63%), Gaps = 10/140 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+ ++ R K +YSI KMR K + +V+D RALRVVV P ++ CY+ L
Sbjct: 249 ISASVQGRPKHIYSIVKKMRGKSLNFDQVFDIRALRVVV---------PNVKDCYAALSW 299
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH + PI EFDDYI PKP+GYQSLHT V+ G +E+QIRTQ MH++AEHG+AAHW
Sbjct: 300 VHEQFKPIVEEFDDYIAKPKPNGYQSLHTIVRDDHGKPIEIQIRTQAMHDHAEHGVAAHW 359
Query: 515 LYKETGNK-LQSISSMDESD 533
YKE G+K +S+ E D
Sbjct: 360 AYKEAGSKGYAGVSAAGEYD 379
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 87/193 (45%), Gaps = 24/193 (12%)
Query: 102 EQVQ---KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILH 158
EQV +A AFA+ G+ +G+ L H IL + S +A +V +H
Sbjct: 31 EQVNALARARAFAEPLMAGETLDSGENTLAHADAVAAILKSIGGSEAMQAASYLVHACIH 90
Query: 159 DVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI--------NVNQGTLG 210
++ E I + FG+ A L ++L + Q R + NV + L
Sbjct: 91 --LNKPEEV---IAKAFGENFAALAVETTKLMRVQQQARGAEHLDDPAVQTENVRKMLLA 145
Query: 211 HEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 262
LA RL +R A A ++A+E+L ++ LA+RLG+W +K ELEDL
Sbjct: 146 FSRDLRVVMLRLASRLQTLRFHAASKLPVAPSLARESLQVFAPLANRLGIWQVKWELEDL 205
Query: 263 CFAVLQPQIFRKM 275
F L+P ++++
Sbjct: 206 SFRFLEPDTYKEV 218
>gi|406967755|gb|EKD92755.1| hypothetical protein ACD_28C00337G0002 [uncultured bacterium]
Length = 798
Score = 137 bits (344), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 108/187 (57%), Gaps = 13/187 (6%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P + +V++A A++AH GQ R++G PY+TH + T IL L P DT++A +
Sbjct: 17 PSLDQSRVEEAYFLAQKAHEGQTRRSGQPYITHPLETAHILLSLKPDE-----DTILAAL 71
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN--------QLLRRHRRINVNQGT 208
LHDV D SL +IE++FG VA LV +LS + + RR
Sbjct: 72 LHDVPADTEVSLKTIEKKFGHAVATLVQSNEKLSLVKLKDGHADVETWRRMFLAMAKDLR 131
Query: 209 LGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQ 268
+ L++RLHNMRT++ALP K +AQETL ++ +ASRLGL++ K ELEDLC VL+
Sbjct: 132 VIFIRLSERLHNMRTLWALPHVKQVRIAQETLYVYAPIASRLGLYSFKTELEDLCLQVLE 191
Query: 269 PQIFRKM 275
P IF +
Sbjct: 192 PDIFEYL 198
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 79/131 (60%), Gaps = 6/131 (4%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDV-GIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLL 452
G+ + RLK LYSI+ KM+ K+ + + D A+R+++ D+ CYS +
Sbjct: 228 GLTGEVHGRLKHLYSIYRKMQVKNAQSVDDILDFFAVRIILPDQFKQ-DREFFAHCYSFI 286
Query: 453 DIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGP----DGSALEVQIRTQKMHEYAEH 508
+H+ +P+ G F DYI PK +GY+S+HT VQG + LE+Q+RT MH+ +E+
Sbjct: 287 GELHQKCMPLPGRFKDYIAVPKLNGYRSIHTTVQGLVKGFEQYPLEIQVRTASMHQESEY 346
Query: 509 GLAAHWLYKET 519
GLAAHW YK++
Sbjct: 347 GLAAHWFYKDS 357
>gi|145589013|ref|YP_001155610.1| (p)ppGpp synthetase I SpoT/RelA [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145047419|gb|ABP34046.1| (p)ppGpp synthetase I, SpoT/RelA [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 676
Score = 136 bits (343), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 86/132 (65%), Gaps = 12/132 (9%)
Query: 387 ISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQ 446
I T+ I G + R K +YSI+ KM+ K + +YD RA RV+V D ++
Sbjct: 205 IKTARIDG---EVLGRPKHIYSIWKKMQGKSLDFANLYDVRAFRVLVED---------VK 252
Query: 447 CCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYA 506
CY++L IVH +W P+ EFDDYI PKP+GYQSLHT V DG+A E+QIRT +MH+ A
Sbjct: 253 TCYAVLGIVHNIWQPVPREFDDYIARPKPNGYQSLHTVVMNEDGAAFEIQIRTHEMHQQA 312
Query: 507 EHGLAAHWLYKE 518
E+GLAAHW YKE
Sbjct: 313 EYGLAAHWRYKE 324
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 6/139 (4%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA RL +R + A + AQE L I SLA+RLG+W +K E+EDL F L P+ +R
Sbjct: 118 LASRLETLRWVTQEKMAMSVTWAQEILNIDASLANRLGIWQMKWEMEDLAFRALSPETYR 177
Query: 274 KMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAV 332
++A+M + R+ I IV + +TA D +H+ S+ K +
Sbjct: 178 ----EIANMLDAK-RIERQAFIERIVVQLQEEIKTARIDGEVLGRPKHIYSIWKKMQGKS 232
Query: 333 VPFDILSDRRKRTKFLHDL 351
+ F L D R + D+
Sbjct: 233 LDFANLYDVRAFRVLVEDV 251
>gi|241763707|ref|ZP_04761756.1| (p)ppGpp synthetase I, SpoT/RelA [Acidovorax delafieldii 2AN]
gi|241367096|gb|EER61470.1| (p)ppGpp synthetase I, SpoT/RelA [Acidovorax delafieldii 2AN]
Length = 737
Score = 136 bits (343), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 68/140 (48%), Positives = 89/140 (63%), Gaps = 10/140 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+ ++ R K +YSI KMR K + +V D RALRVVV P+++ CY+ L
Sbjct: 249 ISASVQGRPKHIYSIVKKMRGKSLNFDQVLDIRALRVVV---------PSVKDCYAALSW 299
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH + PI EFDDYI PKP+GYQSLHT V+ G +E+QIRTQ MH++AEHG+AAHW
Sbjct: 300 VHEQFTPIVEEFDDYIARPKPNGYQSLHTIVRDAAGKPIEIQIRTQAMHDHAEHGVAAHW 359
Query: 515 LYKETGNK-LQSISSMDESD 533
YKE G+K +S+ E D
Sbjct: 360 AYKEAGSKGYAGVSATGEYD 379
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 87/197 (44%), Gaps = 32/197 (16%)
Query: 102 EQVQ---KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILH 158
EQV +A AFA+ G+ +G+ L H IL + S +A +V
Sbjct: 31 EQVNALARARAFAEPLMAGETLDSGENTLAHADAVAAILKAIGGSEAMQAASYLV----- 85
Query: 159 DVVDDACESLGSIEE----EFGDEVAKLVAGVSRLSYINQLLRRHRRI--------NVNQ 206
AC L EE FG+ A L ++L + + R +++ NV +
Sbjct: 86 ----HACGHLNKPEEVIAKAFGENFAALAVETTKLMRVQRQARGAQQVDDPAVQTENVRK 141
Query: 207 GTLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 258
L LA RL +R A + ++A+E+L ++ LA+RLG+W +K E
Sbjct: 142 MLLAFSRDLRVVMLRLASRLQTLRFHAASKRPVSPSLARESLQVFAPLANRLGIWQVKWE 201
Query: 259 LEDLCFAVLQPQIFRKM 275
LEDL F L+P ++++
Sbjct: 202 LEDLSFRFLEPDTYKEV 218
>gi|392552203|ref|ZP_10299340.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Pseudoalteromonas
spongiae UST010723-006]
Length = 728
Score = 136 bits (343), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 99/158 (62%), Gaps = 13/158 (8%)
Query: 361 AKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGI 420
AK++ D IA S ++ AL K L + G+E + R K +YSI+ KM+ K+
Sbjct: 213 AKLLDDKRIARESYMSNMVALVKAKLAES----GIEAEVYGRPKHIYSIYKKMQNKNYEF 268
Query: 421 HKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQS 480
+++D RA+RVVV + +Q CY+ L IVH W ++ EFDDYI PK +GYQS
Sbjct: 269 DQLFDIRAMRVVVNE---------LQDCYAALGIVHTNWRHLNKEFDDYIATPKANGYQS 319
Query: 481 LHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
+HT V GP+G +E+QIRTQ MH+ AE G+AAHWLYKE
Sbjct: 320 IHTVVFGPEGKTVEIQIRTQAMHQDAELGVAAHWLYKE 357
>gi|389871811|ref|YP_006379230.1| GTP pyrophosphokinase [Advenella kashmirensis WT001]
gi|388537060|gb|AFK62248.1| GTP pyrophosphokinase [Advenella kashmirensis WT001]
Length = 764
Score = 136 bits (343), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 122/437 (27%), Positives = 203/437 (46%), Gaps = 82/437 (18%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
+ V++A+A+ TG+P + H +IL++L + V +V I D+
Sbjct: 14 KMVEQAVAWCDPILQDASIATGEPSIHHAKGMLQILSLLQLDAAT-LVAALVLAIPIDLE 72
Query: 162 DDACESL-GSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHN 220
D++ + + + FG E L+ G L I + R N + GH E + +
Sbjct: 73 DESAQDQKNELIKLFGLETFSLINGSRALLRIGAIAR-------NASSQGHNESSGQREM 125
Query: 221 MRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 280
+R + A+A + ++ LASRL AE ++ C L + R + A LA
Sbjct: 126 LRKMLL-------AMASDLRIVLIRLASRLQTLRWYAETKNPCPIELAEET-RDVYASLA 177
Query: 281 SMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSD 340
NR+G I I M+DL F LS
Sbjct: 178 ------NRLG----IWQIK-----------------------WEMEDL-----SFRFLS- 198
Query: 341 RRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLS 400
+ D+A+ E ++ + ++A I ++L +++ S + + G+E +S
Sbjct: 199 ----PEIYKDIARKLEGKR---IEREARI---------QSLTEDIAGSLADM-GIEADVS 241
Query: 401 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 460
R K +YSI++KMR K + ++YD A+R++V ++ CY+ L ++ W
Sbjct: 242 GRAKHIYSIYNKMRNKRLTFDQLYDLLAIRIIVANERD---------CYATLSLLQARWT 292
Query: 461 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 520
P+ EFDDYI PKP+GY+SLHT ++ DG E QIRT+KMH++AE+G+AAHW YKE G
Sbjct: 293 PVMNEFDDYIARPKPNGYRSLHTVLKTADGHTFEAQIRTRKMHDFAEYGMAAHWRYKEAG 352
Query: 521 NKLQSISSMDESDIEAS 537
K ++++ D + S
Sbjct: 353 PKGGQVAAVSMYDRQVS 369
>gi|70731792|ref|YP_261534.1| GTP diphosphokinase [Pseudomonas protegens Pf-5]
gi|68346091|gb|AAY93697.1| GTP diphosphokinase [Pseudomonas protegens Pf-5]
Length = 747
Score = 136 bits (343), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVNADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQSISSMDESDI 534
W YK G ++S S+ E I
Sbjct: 366 WKYK--GTDVKSGSNHYEEKI 384
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 91/195 (46%), Gaps = 19/195 (9%)
Query: 99 FNDEQVQKAIAFAKRAHHGQF-RKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGIL 157
+ E +++A FA+ A K P TG +A ++ + K D++VA +L
Sbjct: 32 LDREALKEACEFAREAELQHIATKNLSPEDVSSFSTGLEIAEIL-ADLKLDQDSLVAAVL 90
Query: 158 HDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN-----------------QLLRRHR 200
+ V + L ++ + FG V KL+ GV R++ I + LR+
Sbjct: 91 YRGVREGQIQLPAVSQRFGPVVTKLIDGVLRMAAITASLSPRQSLVLGTQAQVENLRKML 150
Query: 201 RINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 260
V+ + +LA+R +R + + K VA+E I+ LA RLG+ +K ELE
Sbjct: 151 VAMVDDVRVALIKLAERTCAIRAVKSADEEKRNRVAREVFDIYAPLAHRLGIGHIKWELE 210
Query: 261 DLCFAVLQPQIFRKM 275
DL F L+P+ ++++
Sbjct: 211 DLSFRYLEPEQYKQI 225
>gi|168066267|ref|XP_001785062.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663355|gb|EDQ50123.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 627
Score = 136 bits (343), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 117/216 (54%), Gaps = 37/216 (17%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ +F D V KA A+ AH GQ R+ GD +L+HC+ T LA + S+ + AG
Sbjct: 108 FNVFYDPVVVKAFRMAEEAHRGQVRRNGDMFLSHCVETALTLAAIGVSN-----TVIAAG 162
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE--- 212
+LHD +DD+ L + + G++VA LV GVS+LS +QL R + T+G+
Sbjct: 163 LLHDAIDDSNFCLKRLRDTLGEDVANLVIGVSKLSEFSQLAR-------DSNTVGNPMEA 215
Query: 213 ------------------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 254
++ADRLHN+RT+ ALP K +A ETL I+ LA+RLG+W
Sbjct: 216 DRLRTMILALVDVRVVLVKIADRLHNLRTLEALPSHKQIGIATETLGIFAPLANRLGIWR 275
Query: 255 LKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVG 290
KAELEDLCF L+P+ + DL+ S R R G
Sbjct: 276 WKAELEDLCFKYLKPEDHQ----DLSMRLSERCREG 307
Score = 126 bits (316), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 98/161 (60%), Gaps = 21/161 (13%)
Query: 368 GIALTSLVACEEALEKELLISTSYIPGME-VTLSSRLKSLYSIFSKMRRKDVGIHKVYDA 426
G+ ++S+ +EAL I G+E + L R K+LYS++ KM +K + ++ D
Sbjct: 307 GLVMSSIKNLDEALR---------IRGVEFIDLCGRPKNLYSVYKKMMKKKRSLEEILDV 357
Query: 427 RALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ 486
LR++V D+N CY L+IVH+L +P G+ DYIV+ KP+GY+SLHT V
Sbjct: 358 IGLRLIVSDENS---------CYEALEIVHQLCMP--GKSKDYIVDSKPNGYKSLHTVVI 406
Query: 487 GPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSIS 527
G DG LEVQIRT KMH AE+GLAAHW YKE ++ + S
Sbjct: 407 GSDGYPLEVQIRTMKMHHQAEYGLAAHWRYKEDNSEHSAFS 447
>gi|419953524|ref|ZP_14469668.1| GTP pyrophosphokinase [Pseudomonas stutzeri TS44]
gi|387969584|gb|EIK53865.1| GTP pyrophosphokinase [Pseudomonas stutzeri TS44]
Length = 747
Score = 136 bits (343), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 66/126 (52%), Positives = 85/126 (67%), Gaps = 9/126 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K +YSI+ KM++K + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIQPEIDGRAKHIYSIWRKMQKKGLQFSQIYDVRAVRVLV---------PEVRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRTQ MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVLGPEGKVLEVQIRTQAMHEEAELGVCAH 365
Query: 514 WLYKET 519
W YK T
Sbjct: 366 WRYKGT 371
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 95/198 (47%), Gaps = 21/198 (10%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYL--THCIHTGRILAMLIPSSGKRAVDTVVA 154
P + +++A FA+ A Q T + + T TG +A ++ + K D++VA
Sbjct: 30 PALDRAALKEACEFAREAEQ-QANATQNLWSEGTSSYQTGLEIAEIL-ADLKLDQDSLVA 87
Query: 155 GILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN-----------------QLLR 197
+++ V + L + + FG VAKL+ GV R++ I+ + LR
Sbjct: 88 AVIYRGVREGKIQLAEVHQRFGPVVAKLIEGVLRMAAISASLNPRESLVLGSQAQVENLR 147
Query: 198 RHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKA 257
+ V+ + +LA+R +R + K + VA+E I+ LA RLG+ +K
Sbjct: 148 KMLVAMVDDVRVALIKLAERTCAIRAVKTASEDKRQRVAREVFDIYAPLAHRLGIGHIKW 207
Query: 258 ELEDLCFAVLQPQIFRKM 275
ELEDL F L+P+ ++++
Sbjct: 208 ELEDLSFRYLEPEQYKQI 225
>gi|426403554|ref|YP_007022525.1| GTP pyrophosphokinase [Bdellovibrio bacteriovorus str. Tiberius]
gi|425860222|gb|AFY01258.1| GTP pyrophosphokinase [Bdellovibrio bacteriovorus str. Tiberius]
Length = 738
Score = 136 bits (343), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 116/202 (57%), Gaps = 14/202 (6%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + + ++KA +F+++ H GQ R++G+PY++H + ILA +DT+ G
Sbjct: 29 YPNADLKIIEKAYSFSEKMHEGQIRRSGEPYISHPLSVAAILADF-----HLDLDTIATG 83
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSR---LSYINQLLRRHRRINVNQGTLGHE 212
+LHD V+D +L I EFGD +A LV GV++ + + N ++ I +G +
Sbjct: 84 LLHDTVEDTAATLEDIRTEFGDVIAHLVDGVTKIGQMKFKNSHEKQGENIRKMIVAMGKD 143
Query: 213 ------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAV 266
+LADRLHNMRT+ +P K +A ETL I+C LA R+G+ ALK ELEDLCF
Sbjct: 144 VRVVLVKLADRLHNMRTLNFMPFEKQERIALETLEIYCPLAGRMGISALKIELEDLCFRY 203
Query: 267 LQPQIFRKMRADLASMWSPRNR 288
+P ++ ++ + S +NR
Sbjct: 204 YRPDMYYELVQQIKKTESEQNR 225
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 96/173 (55%), Gaps = 25/173 (14%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G + R K L+SI+ KM+ +++ +VYD A RV+V ++ CY+ L
Sbjct: 242 GFRYEVYGRSKHLWSIYRKMQSRNIDYDQVYDVLAFRVLV---------ESVAECYAALG 292
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW PI G F D+I PK + YQSLHT V GP G +E+QIRT +MH AE G+AAH
Sbjct: 293 LVHSLWKPIPGRFKDFIAMPKANNYQSLHTTVMGPGGERIEIQIRTSEMHLVAEKGIAAH 352
Query: 514 WLYKETGNKLQSISSMDESDIEASSSLSKDTDDH----NP------LDTDLFQ 556
W YKE G +D+SD++ ++ L H NP + TDLF+
Sbjct: 353 WKYKERG------KMVDDSDLQQANWLRDLVSWHQNVRNPDEFLDTVKTDLFE 399
>gi|422647052|ref|ZP_16710183.1| RelA/SpoT protein [Pseudomonas syringae pv. maculicola str. ES4326]
gi|330960597|gb|EGH60857.1| RelA/SpoT protein [Pseudomonas syringae pv. maculicola str. ES4326]
Length = 747
Score = 136 bits (343), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 84/129 (65%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ + R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADIGGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNK 522
W YK T K
Sbjct: 366 WRYKGTDVK 374
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 94/196 (47%), Gaps = 19/196 (9%)
Query: 98 IFNDEQVQKAIAFAKRAHHG-QFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
+ + E ++KA FA++A + K T TG +A ++ + K D++VA +
Sbjct: 31 VLDREVMKKACEFARQAEQNDKAHKNHWADDTSSFQTGLEIAEIL-ADLKLDQDSLVAAV 89
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN-----------------QLLRRH 199
++ V + L +E+ FG VAKL+ GV R++ I+ + LR+
Sbjct: 90 IYRGVREGVIPLPEVEQRFGSTVAKLIDGVLRMAAISASLSPRQSLVLGSQAQVENLRKM 149
Query: 200 RRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAEL 259
V+ + +LA+R +R + K VA+E I+ LA RLG+ +K EL
Sbjct: 150 LVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRLGIGHIKWEL 209
Query: 260 EDLCFAVLQPQIFRKM 275
EDL F L+P ++++
Sbjct: 210 EDLSFRYLEPDQYKQI 225
>gi|220935281|ref|YP_002514180.1| GTP diphosphokinase [Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|219996591|gb|ACL73193.1| GTP diphosphokinase [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 770
Score = 136 bits (343), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 121/207 (58%), Gaps = 15/207 (7%)
Query: 351 LAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIP-GMEVTLSSRLKSLYSI 409
+ + SE ++ A++++++ + + E +E+ + T+ P G+E + R K +YSI
Sbjct: 247 ILEPSEYRRVARLLEESRTERETYI--REFMER---LETALRPEGIEARVLGRPKHIYSI 301
Query: 410 FSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDY 469
+ KM RK + ++YD RA+RV+V D+ I CY++L +VH LW I EFDDY
Sbjct: 302 WRKMERKQLDFEELYDLRAVRVIV-DR--------IPTCYTVLGVVHGLWPHIPQEFDDY 352
Query: 470 IVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSM 529
I NPK +GYQSLHTAV GP +EVQIRTQ M ++AE G+AAHW YKE G + Q++
Sbjct: 353 IANPKDNGYQSLHTAVIGPRAKVVEVQIRTQAMDDFAELGVAAHWRYKEGGREDQAMGRA 412
Query: 530 DESDIEASSSLSKDTDDHNPLDTDLFQ 556
S + D + ++LFQ
Sbjct: 413 IGSLRRLLENREDDEALMDSFRSELFQ 439
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 213 ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 272
+LA R+ +R + P ARA A+ETL ++ LA RLG+ LK E+EDL F +L+P +
Sbjct: 194 KLAYRVQRLRLLATEPDDLARAYARETLEVFAPLAHRLGIGQLKWEMEDLSFRILEPSEY 253
Query: 273 RKM 275
R++
Sbjct: 254 RRV 256
>gi|88797955|ref|ZP_01113542.1| GTP pyrophosphokinase [Reinekea blandensis MED297]
gi|88779152|gb|EAR10340.1| GTP pyrophosphokinase [Reinekea sp. MED297]
Length = 744
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 63/129 (48%), Positives = 88/129 (68%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
++ + R K +YSI+ KM+RK++ +VYD RA R++V P ++ CY++L
Sbjct: 254 NVQAEIQGRAKHIYSIWRKMKRKNITFSQVYDIRAFRILV---------PEVRDCYTVLG 304
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH +W I EFDDYI +PK +GY+SLHTAV GP+G +E+QIRTQ+MH+ AE G+ AH
Sbjct: 305 IVHSMWRHIPREFDDYIASPKQNGYRSLHTAVIGPEGKVVEIQIRTQEMHDDAELGVCAH 364
Query: 514 WLYKETGNK 522
WLYK T K
Sbjct: 365 WLYKGTDAK 373
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 89/172 (51%), Gaps = 27/172 (15%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINV----- 204
D +VA +L+ V + +L ++ ++FG ++A L+ GV R++ I+ R+ R +V
Sbjct: 82 DALVAAVLYRTVREEELALETVRDQFGPKIANLIQGVMRMAAISN--RKSTRDSVFGQNE 139
Query: 205 NQGTLGHE--------------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 250
QG + +LA+R +R I P A+ VA+E I+ LA RL
Sbjct: 140 TQGEAVRKMLVAMIDDVRVALIKLAERTCAIRAIKHSPAARRYRVAREVFDIYAPLAHRL 199
Query: 251 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR--NRVGYSRRITTIVS 300
G+ LK ELEDL F ++PQ ++K +A + + +R Y +++ T+++
Sbjct: 200 GVGHLKWELEDLAFRYIEPQDYKK----IAKLLDEKRLDRQEYIQKVQTLIT 247
>gi|319793992|ref|YP_004155632.1| (p)ppGpp synthetase I SpoT/RelA [Variovorax paradoxus EPS]
gi|315596455|gb|ADU37521.1| (p)ppGpp synthetase I, SpoT/RelA [Variovorax paradoxus EPS]
Length = 746
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 71/146 (48%), Positives = 93/146 (63%), Gaps = 18/146 (12%)
Query: 381 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 440
LE+EL G+ T+ R K++YSI KMR K + +V+D ALRVVV D
Sbjct: 245 LERELQAE-----GVHATVQGRPKNIYSIVKKMRGKSLDFAQVFDILALRVVVAD----- 294
Query: 441 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ----GPDGSALEVQ 496
++ CY+ L VH + PID EFDDYI PKP+GYQSLHT V+ G G +E+Q
Sbjct: 295 ----VKDCYAALAWVHTHFQPIDEEFDDYIARPKPNGYQSLHTVVRELVDGKPGKPIEIQ 350
Query: 497 IRTQKMHEYAEHGLAAHWLYKETGNK 522
IRT++MH++AEHG+AAHW YKE G+K
Sbjct: 351 IRTEEMHDHAEHGVAAHWAYKEAGHK 376
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 81/187 (43%), Gaps = 24/187 (12%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A AFA+ + TG+ L H I+A + S +A +V H ++
Sbjct: 40 RARAFAEPLIADEKLDTGENTLAHADAVAAIVAKMGGSEAMQAASYLVYSCQH--LNRPQ 97
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE------------ 213
E + + FGD A L ++L + + R + + +G E
Sbjct: 98 EVIAKV---FGDNFAALAVETTKLVRVQEQARSASQGHHIEGAGAQTENVRKMLLAFSRD 154
Query: 214 -------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAV 266
LA RL +R A +VA+E+L ++ LA+RLG+W +K E+EDL F
Sbjct: 155 LRVVMLRLASRLQTLRHAAASKQPAPESVARESLQVFAPLANRLGIWQVKWEIEDLSFRF 214
Query: 267 LQPQIFR 273
++P+ ++
Sbjct: 215 IEPETYK 221
>gi|289523398|ref|ZP_06440252.1| GTP diphosphokinase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
gi|289503090|gb|EFD24254.1| GTP diphosphokinase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
Length = 764
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ ++ R K YSI+ KM+RK++ I ++YD ALRV+ ++ CY +L
Sbjct: 278 GIRAFITGRAKHFYSIYEKMKRKNLTIEQMYDLLALRVITN---------SVVDCYQVLG 328
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH +W PI G+FDDYI NPK + YQSLHT V GP G LEVQIRT MH AE+G+AAH
Sbjct: 329 IVHTIWKPIPGQFDDYIANPKSNMYQSLHTTVVGPSGEPLEVQIRTWDMHWIAEYGIAAH 388
Query: 514 WLYKE 518
W YKE
Sbjct: 389 WRYKE 393
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 101/180 (56%), Gaps = 14/180 (7%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A +A H Q R TG+PY+ H + IL S V+T+VA +LHDV++D
Sbjct: 75 EAFVYAANKHKNQKRATGEPYVVHVLSVAGIL-----SDVNIDVETLVAALLHDVIEDTD 129
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYIN---------QLLRRHRRINVNQGTLGHEELAD 216
+ ++ +FG VA LV GV++L I+ + LR+ + + +LAD
Sbjct: 130 STFEEVKAKFGTNVAVLVDGVTKLGNIDFKTVEDYQAENLRKMFLVMAKDIRVVLIKLAD 189
Query: 217 RLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 276
RLHNMRTI L K +A+ETL I+ LA RLG++ +K ELEDL F VL+P ++ ++R
Sbjct: 190 RLHNMRTIQVLRREKQLRIARETLEIYAPLAHRLGIYHMKRELEDLAFKVLEPDMYYEIR 249
>gi|409398264|ref|ZP_11249078.1| GTP pyrophosphokinase [Pseudomonas sp. Chol1]
gi|409117194|gb|EKM93629.1| GTP pyrophosphokinase [Pseudomonas sp. Chol1]
Length = 747
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 66/126 (52%), Positives = 85/126 (67%), Gaps = 9/126 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K +YSI+ KM++K + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIQPEIDGRAKHIYSIWRKMQKKGLQFSQIYDVRAVRVLV---------PEVRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRTQ MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTQAMHEEAELGVCAH 365
Query: 514 WLYKET 519
W YK T
Sbjct: 366 WRYKGT 371
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 72/143 (50%), Gaps = 17/143 (11%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------------- 193
D++VA +++ V + L + + FG VAKL+ GV R++ I+
Sbjct: 83 DSLVAAVIYRGVREGKIQLAEVHQRFGPVVAKLIEGVLRMAAISASLNPRESLVLGSQAQ 142
Query: 194 -QLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+ LR+ V+ + +LA+R +R + K + VA+E I+ LA RLG+
Sbjct: 143 VENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNASEDKRQRVAREVFDIYAPLAHRLGI 202
Query: 253 WALKAELEDLCFAVLQPQIFRKM 275
+K ELEDL F L+P+ ++++
Sbjct: 203 GHIKWELEDLSFRYLEPEQYKQI 225
>gi|451823182|ref|YP_007459456.1| GTP pyrophosphokinase [Candidatus Kinetoplastibacterium desouzaii
TCC079E]
gi|451775982|gb|AGF47023.1| GTP pyrophosphokinase [Candidatus Kinetoplastibacterium desouzaii
TCC079E]
Length = 734
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 69/148 (46%), Positives = 95/148 (64%), Gaps = 19/148 (12%)
Query: 382 EKELLISTSYIP---------GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 432
E+EL IS YI G++ +S R K +YSI++KM+ KD+ + D A+RV+
Sbjct: 230 ERELFIS-KYIKDISYALIRAGIKGEVSGRPKHIYSIWNKMQTKDMDFFSLSDLSAVRVI 288
Query: 433 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 492
V D I+ CY +L ++H +W PI EF+DYI PK +GYQSLHT V+ +GS
Sbjct: 289 VND---------IKNCYEVLGVIHEIWEPITEEFNDYISCPKTNGYQSLHTVVRESNGSL 339
Query: 493 LEVQIRTQKMHEYAEHGLAAHWLYKETG 520
LE+QIRT +MH++AEHGLAAHW YKE+
Sbjct: 340 LEIQIRTYEMHQFAEHGLAAHWFYKESS 367
Score = 47.0 bits (110), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 73/171 (42%), Gaps = 21/171 (12%)
Query: 123 GDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKL 182
G+ H I+T IL + R + ++++ + ++V+ + + + FG ++ L
Sbjct: 53 GESLFDHGINTVNILTAINADKSTR-LASLLSSLPYNVISNLLKD-KYMSNLFGSDIVNL 110
Query: 183 VAGVSRLSYINQLLRRHRRINVNQGTLGHE------------------ELADRLHNMRTI 224
+ G LS I + R N E L+ RL +R
Sbjct: 111 IKGSLSLSKIG-IATRSLSYKFNASNAQKEMKRKMLLAMAVDLRIILIRLSSRLQTLRWC 169
Query: 225 YALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
+ AQET+ ++ LA+RLG+W +K E+EDL F +L ++K+
Sbjct: 170 SYSHKDVYKEFAQETIDLYSPLANRLGVWQIKWEIEDLSFRILYSNEYKKI 220
>gi|398811748|ref|ZP_10570537.1| (p)ppGpp synthetase, RelA/SpoT family [Variovorax sp. CF313]
gi|398079838|gb|EJL70676.1| (p)ppGpp synthetase, RelA/SpoT family [Variovorax sp. CF313]
Length = 734
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 67/133 (50%), Positives = 89/133 (66%), Gaps = 13/133 (9%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ T+ R K++YSI KMR K + +V+D ALRVVV P ++ CY+ L
Sbjct: 241 GVKATVQGRPKNIYSIVKKMRGKSLDFEQVFDILALRVVV---------PDVKDCYAALA 291
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ----GPDGSALEVQIRTQKMHEYAEHG 509
VH + PID EFDDYI PKP+GYQSLHT V+ G G +E+QIRT++MH++AEHG
Sbjct: 292 WVHSHFQPIDEEFDDYIARPKPNGYQSLHTVVRELVDGKAGKPIEIQIRTEEMHDHAEHG 351
Query: 510 LAAHWLYKETGNK 522
+AAHW YKE G+K
Sbjct: 352 VAAHWAYKEAGHK 364
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 24/192 (12%)
Query: 101 DEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDV 160
+ + +A AFA+ + TG+ L H I+A + S +A +V H
Sbjct: 23 ENMLARARAFAEPLIADEKLDTGENSLAHADAVAAIVAKMGGSEAMQAASYLVYSCQH-- 80
Query: 161 VDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE------- 213
++ E + + FGD A L ++L + + R + + +G E
Sbjct: 81 LNRPQEVIAKV---FGDNFAALAVETTKLVRVQEQARSASQGHHVEGAGAQTENVRKMLL 137
Query: 214 ------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 261
LA RL +R A +VA+E+L ++ LA+RLG+W +K E+ED
Sbjct: 138 AFSRDLRVVMLRLASRLQTLRHAAASKQPAPESVARESLQVFAPLANRLGIWQVKWEIED 197
Query: 262 LCFAVLQPQIFR 273
L F L+P+ ++
Sbjct: 198 LSFRFLEPETYK 209
>gi|7141306|gb|AAF37282.1|AF225703_1 RSH2 [Arabidopsis thaliana]
Length = 710
Score = 136 bits (342), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 84/195 (43%), Positives = 111/195 (56%), Gaps = 25/195 (12%)
Query: 98 IFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGIL 157
IFNDE V KA A++AH GQ R + DPYL HC+ T AML+ + G + VVAG+L
Sbjct: 205 IFNDESVIKAFYEAEKAHRGQMRASRDPYLQHCVET----AMLLANIGANST-VVVAGLL 259
Query: 158 HDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE----- 212
HD VDD+ S I FG VA LV GVS+LS +++L R + N T+ +
Sbjct: 260 HDTVDDSFMSYDYILRNFGAGVADLVEGVSKLSQLSKLAREN---NTACKTVEADRLHPM 316
Query: 213 ------------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 260
+LADRLHNM+T+YAL P K + A+ETL I+ LA+ LG+ K +LE
Sbjct: 317 FLAMADARAVLIKLADRLHNMKTLYALSPVKQQRFAKETLEIFAPLANCLGISTWKVQLE 376
Query: 261 DLCFAVLQPQIFRKM 275
+LCF L P +M
Sbjct: 377 NLCFKHLYPNQHNEM 391
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 77/128 (60%), Gaps = 9/128 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
L R KSLYSI+SKM +K + + +++D LR++V D G CY L +VH L
Sbjct: 425 LCGRHKSLYSIYSKMLKKKLTVDEIHDIHGLRLIV-DNEGD--------CYKALGVVHSL 475
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W + G+ DYI +PK +GYQSLHT V LEVQIRTQ+MH AE G AAHW YKE
Sbjct: 476 WSEVPGKLKDYITHPKFNGYQSLHTVVMDNGTVPLEVQIRTQEMHLQAEFGFAAHWRYKE 535
Query: 519 TGNKLQSI 526
G K S
Sbjct: 536 GGCKYSSF 543
>gi|121998519|ref|YP_001003306.1| metal dependent phosphohydrolase [Halorhodospira halophila SL1]
gi|121589924|gb|ABM62504.1| metal dependent phosphohydrolase [Halorhodospira halophila SL1]
Length = 736
Score = 136 bits (342), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 65/129 (50%), Positives = 86/129 (66%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K +YSI+ KM+RK + +YD RA+R++V D+ + CY+ L
Sbjct: 249 GLKAEVYGRPKHIYSIYRKMQRKGLRFDDLYDLRAVRILVDDE---------RTCYAALG 299
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW PI EFDDYI PK + Y+SLHTAV GP+G A+EVQIRT +MH AE G+AAH
Sbjct: 300 IVHGLWTPIPREFDDYIATPKENNYRSLHTAVAGPEGKAVEVQIRTHEMHAEAELGIAAH 359
Query: 514 WLYKETGNK 522
W YKE G +
Sbjct: 360 WRYKEGGKQ 368
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 95/202 (47%), Gaps = 26/202 (12%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+++A A+ + + R +G+PY H ++T ILA T+ A ++HD+ +
Sbjct: 36 LEQAWERARAGYGERLRDSGEPYFAHAVYTATILA-----ELGLDAATLAAALIHDLPEL 90
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQL-----------------LRRHRRINVNQ 206
S+ + + G ++A+L GV R+ I + LR+
Sbjct: 91 QEGSIAGLRKHLGGDIAELAQGVCRMHGIGRFRDSAELEAAIQGERVEGLRKMLLAMARD 150
Query: 207 GTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAV 266
+ LA+RLH++R+ L +A+ET I+ LA+RLG+W LK ELEDL F
Sbjct: 151 VRVVFIALAERLHDLRSCRGLDEEGRMRLARETRDIYAPLANRLGIWQLKWELEDLAFRH 210
Query: 267 LQPQIFRKMRADLASMWSPRNR 288
L+P+ + DLA + R R
Sbjct: 211 LEPEAY----MDLAKRLAERRR 228
>gi|429742735|ref|ZP_19276350.1| putative GTP diphosphokinase [Neisseria sp. oral taxon 020 str.
F0370]
gi|429167767|gb|EKY09653.1| putative GTP diphosphokinase [Neisseria sp. oral taxon 020 str.
F0370]
Length = 736
Score = 136 bits (342), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 83/128 (64%), Gaps = 9/128 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ ++ R K +YSI+ KM +K +G +YD RA+R++V + CY+ L
Sbjct: 252 GIRYDVAGRPKHIYSIYKKMVKKKLGFDGLYDIRAVRILVD---------TVPECYTTLG 302
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW PI GEFDDYI NPK +GYQSLHT + GP+ +EVQIRT +MH + E G+AAH
Sbjct: 303 IVHSLWQPIPGEFDDYIANPKGNGYQSLHTVIVGPEDKGVEVQIRTFEMHRFNEFGVAAH 362
Query: 514 WLYKETGN 521
W YKE G
Sbjct: 363 WRYKEGGK 370
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 96/194 (49%), Gaps = 29/194 (14%)
Query: 104 VQKAIAFAKRAHHGQF-RKTGDPYLTHCIHTGRILAM--LIPSSGKRAVDTVVAGILHDV 160
+++A+A A++A+ G+P L H + R++A L+P + V A +L D+
Sbjct: 36 LRQALAAAQKAYPADAATPMGEPLLPHLLKAARLVAEIDLLP-------EAVAATVLADI 88
Query: 161 VDDACESLGSIEEEFGDEVAKLVAGV---------SRLSYIN---------QLLRRHRRI 202
++ E G VA LV G+ +R+ +N + +R+
Sbjct: 89 SSYREGWYEAVAETCGKTVADLVRGIDEVQKLTHFARVDNLNTPEERAEQAETMRKMLLA 148
Query: 203 NVNQGTLGHEELADRLHNMRTIYALPPA-KARAVAQETLLIWCSLASRLGLWALKAELED 261
V+ + +LA R + + ++P + + RA+A+ETL I+ LA+RLG+W LK +LED
Sbjct: 149 MVSDIRVVIVKLALRTQTLHFLGSVPDSPEKRALAKETLDIFAPLANRLGVWQLKWQLED 208
Query: 262 LCFAVLQPQIFRKM 275
L F P+ +R++
Sbjct: 209 LGFRHQNPEKYREI 222
>gi|292491389|ref|YP_003526828.1| RelA/SpoT family protein [Nitrosococcus halophilus Nc4]
gi|291579984|gb|ADE14441.1| RelA/SpoT family protein [Nitrosococcus halophilus Nc4]
Length = 712
Score = 136 bits (342), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 83/125 (66%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K LYSI+ KMR K++ H+++D A RV+V D + CY+ L
Sbjct: 224 GLRGEVSGRPKHLYSIWKKMRNKNLDFHQLFDVHAFRVIVDD---------VSACYATLS 274
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW PI EFDDYI NPKP+GY+SLHTAV GP +E+QIR+ +MH +E G+A+H
Sbjct: 275 LVHTLWTPIPEEFDDYIANPKPNGYRSLHTAVLGPGKKPMEIQIRSFQMHGESELGVASH 334
Query: 514 WLYKE 518
W YKE
Sbjct: 335 WRYKE 339
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 12/139 (8%)
Query: 149 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL------------L 196
+T AG+L ++ + I +E G + +L+ G RL+ + L
Sbjct: 56 TETQSAGLLLPAMEMGVLNPAVITKELGPAITRLLRGAERLAVLKHYRSSEKDPTQAEKL 115
Query: 197 RRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 256
R+ V + LAD L+ +R A + + QETL I+ LA+RLG+W LK
Sbjct: 116 RKMLLAIVEDPRVVLVRLADHLYRLRHAKNALEATRQTLGQETLDIFAPLANRLGIWQLK 175
Query: 257 AELEDLCFAVLQPQIFRKM 275
ELEDL L+P+ ++++
Sbjct: 176 WELEDLALRYLEPETYQQL 194
>gi|380513565|ref|ZP_09856972.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Xanthomonas sacchari NCPPB 4393]
Length = 718
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 70/151 (46%), Positives = 93/151 (61%), Gaps = 11/151 (7%)
Query: 373 SLVACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALR 430
S VA E +E K++L G+ +S R K +YSI+ KM++K + ++YD RA+R
Sbjct: 209 SRVARERYIEAVKKILSKALAEQGLRAEISGRPKHIYSIWRKMQKKRLAFDQLYDLRAVR 268
Query: 431 VVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDG 490
V+V D + CY+ L +VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 269 VMVDD---------VAACYAALGVVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEG 319
Query: 491 SALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+EVQIRT MH AE G+AAHW YKE G
Sbjct: 320 RTIEVQIRTHDMHAQAELGVAAHWKYKEGGK 350
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 71/140 (50%), Gaps = 6/140 (4%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR P A+ RA+AQ T I LA+RLG+W LK ELEDL F L+P +R
Sbjct: 141 LARQLAQMRVADKAPEAQRRALAQLTRDIHAPLANRLGIWQLKWELEDLAFRHLEPDTYR 200
Query: 274 KMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAV 332
++ ++ R R Y + I+S ++ ++ + +H+ S+ + + +
Sbjct: 201 RIAREVDESRVARER--YIEAVKKILSKALAEQGLRAE---ISGRPKHIYSIWRKMQKKR 255
Query: 333 VPFDILSDRRKRTKFLHDLA 352
+ FD L D R + D+A
Sbjct: 256 LAFDQLYDLRAVRVMVDDVA 275
>gi|53804046|ref|YP_114354.1| GTP pyrophosphokinase [Methylococcus capsulatus str. Bath]
gi|53757807|gb|AAU92098.1| GTP pyrophosphokinase [Methylococcus capsulatus str. Bath]
Length = 718
Score = 135 bits (341), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 97/157 (61%), Gaps = 17/157 (10%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K LYSI+ KM RK + +YD A+RV V +I CY++L
Sbjct: 237 GIDARVSGRPKHLYSIWKKMERKHAQLADLYDLLAVRVTVD---------SIPTCYTVLG 287
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
VH LW I EFDDYI NPK +GYQSLHT V GPD +E+QIRTQ MHE+AE+G+AAH
Sbjct: 288 AVHGLWPHIPKEFDDYIANPKDNGYQSLHTVVIGPDDRPVEIQIRTQAMHEFAEYGVAAH 347
Query: 514 WLYKETGNK-------LQSISSMDESDIEASSSLSKD 543
W YKE G + + S+ + ES+ E + SL +D
Sbjct: 348 WRYKEGGGQDAAFDRSIASLRRLLESE-EDNDSLLQD 383
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 59/129 (45%), Gaps = 13/129 (10%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQ-------------LLRRHRRINVNQGTLGHEELADR 217
I + F +E +L+ V+ L+ N+ LLRR VN LA R
Sbjct: 90 IRDHFEEETVRLLEKVNWLNTFNEYSLQDNPGPEQAELLRRMLLSVVNDVRAVLVRLAYR 149
Query: 218 LHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRA 277
+ MR + ++A+ETL ++ LA RLG+ LK ELEDL F L P +R +
Sbjct: 150 VQRMRILKYQDSDVRESIARETLELYAPLAHRLGVGQLKWELEDLSFRYLHPDEYRTLAK 209
Query: 278 DLASMWSPR 286
L + + R
Sbjct: 210 SLNTNRAER 218
>gi|285019015|ref|YP_003376726.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Xanthomonas albilineans GPE PC73]
gi|283474233|emb|CBA16734.1| putative guanosine polyphosphate pyrophosphohydrolase/synthetase
protein [Xanthomonas albilineans GPE PC73]
Length = 725
Score = 135 bits (341), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 69/151 (45%), Positives = 95/151 (62%), Gaps = 11/151 (7%)
Query: 373 SLVACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALR 430
S +A E +E K+ L + G+ +S R K +YSI+ KM++K + ++YD RA+R
Sbjct: 216 SRLARERYIEAVKKTLSKALAVQGLCAEISGRPKHIYSIWRKMQKKRLAFDQLYDLRAVR 275
Query: 431 VVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDG 490
V+V D + CY+ L +VH LW+P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 276 VMVDD---------VAACYAALGVVHALWVPVPSEFDDYIARPKANDYRSLHTAVVGPEG 326
Query: 491 SALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+EVQIRT +MH AE G+AAHW YKE G
Sbjct: 327 RTIEVQIRTHEMHAQAELGVAAHWKYKEGGK 357
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 37/62 (59%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR + RA+AQ T I LA+RLG+W LK ELEDL F L+P +R
Sbjct: 148 LARQLAQMRVADKASEEQRRALAQLTRDIHAPLANRLGIWQLKWELEDLAFRDLEPDTYR 207
Query: 274 KM 275
++
Sbjct: 208 RI 209
>gi|404380117|ref|ZP_10985157.1| RelA/SpoT family protein [Simonsiella muelleri ATCC 29453]
gi|404294423|gb|EFG30276.2| RelA/SpoT family protein [Simonsiella muelleri ATCC 29453]
Length = 731
Score = 135 bits (341), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 64/127 (50%), Positives = 83/127 (65%), Gaps = 9/127 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ ++ R K +YSI+ KM +K + +YD RA+RV+V I CY+ L
Sbjct: 247 GIVCDVAGRPKHIYSIYKKMVKKKLDFDGLYDIRAVRVLVN---------TIAECYTTLG 297
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT +MHE+ E G+AAH
Sbjct: 298 IVHSLWQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGIEVQIRTHEMHEFNEFGVAAH 357
Query: 514 WLYKETG 520
W YKE G
Sbjct: 358 WRYKEGG 364
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 213 ELADRLHNMRTIYALP--PAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
+LA R M+ +P P K R+VA+ETL I+ LA+RLG+W LK +LEDL F P+
Sbjct: 154 KLALRTRTMQYFAQVPDSPHK-RSVAKETLDIFAPLANRLGVWQLKWQLEDLGFRYQNPE 212
Query: 271 IFRKM 275
++++
Sbjct: 213 EYKRI 217
>gi|242050856|ref|XP_002463172.1| hypothetical protein SORBIDRAFT_02g039080 [Sorghum bicolor]
gi|241926549|gb|EER99693.1| hypothetical protein SORBIDRAFT_02g039080 [Sorghum bicolor]
Length = 583
Score = 135 bits (341), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 88/214 (41%), Positives = 123/214 (57%), Gaps = 19/214 (8%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF DE V++A A A+ AH GQ R +GDPYL HC+ T +LA + V AG
Sbjct: 96 HAIFRDELVRRAFAAAEAAHRGQVRASGDPYLQHCVETAALLAEIGAGPA-----VVAAG 150
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHR---RIN----VNQGT 208
+LHD VDDA G I E FG VA LV GVS+LS++++L RR+ RI+ +
Sbjct: 151 LLHDTVDDAGLGYGFISEHFGAGVADLVKGVSKLSHLSKLARRNNTASRIDEADRLRIVF 210
Query: 209 LGHEE-------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 261
L E+ LADRLHNMRT+ +LP K ++ A+ETL I+ LA++LG+ K +LE+
Sbjct: 211 LAMEDARAVLIKLADRLHNMRTLDSLPKNKQQSFAKETLEIFAPLANQLGILNWKEQLEN 270
Query: 262 LCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRI 295
LCF L P F ++ L ++ +RR+
Sbjct: 271 LCFKYLCPDKFDELSTSLTEFYNRDMIAAATRRL 304
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/132 (46%), Positives = 83/132 (62%), Gaps = 11/132 (8%)
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R KSLYSI+SKM RK + + ++YD +RV++ +K C++ L+I+H LW
Sbjct: 321 RHKSLYSIYSKMARKKLVMDEIYDIHGVRVILENKAD---------CFAALEIIHHLWPR 371
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
I G+F DYI +PKP+ YQSLHT V + LE+QIRT+ MH AE G+AAHW YKE
Sbjct: 372 IPGKFKDYINSPKPNRYQSLHTVVLTEETLPLEIQIRTRDMHLQAEFGIAAHWRYKEVAA 431
Query: 522 K--LQSISSMDE 531
+ S+S M E
Sbjct: 432 RSCCTSVSEMVE 443
>gi|399908035|ref|ZP_10776587.1| (p)ppGpp synthetase I SpoT/RelA [Halomonas sp. KM-1]
Length = 711
Score = 135 bits (341), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 116/425 (27%), Positives = 194/425 (45%), Gaps = 97/425 (22%)
Query: 95 GY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVV 153
GY P +QV++A +A++AH GQ R++G+PY+TH + ILA + +++
Sbjct: 13 GYLPPDEIQQVKRAFYYAEQAHDGQRRRSGEPYVTHPLAVANILANMHMDH-----QSLM 67
Query: 154 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE 213
+ +LHDV++D S ++ E+FG VA E
Sbjct: 68 SAMLHDVIEDTGVSKEALAEQFGKPVA--------------------------------E 95
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL-CFAVLQPQIF 272
L D + + I A A+A + +++ S R+ + L L ++ L+P+
Sbjct: 96 LVDGVSKLTQITFEDKAVAQAENFQKMVLAMSRDIRVIIVKLADRLHNMRTLGALRPEKK 155
Query: 273 RKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAV 332
R++ + +++ R+ I TI R +D SF +A+
Sbjct: 156 RRIARETLEIYA---RIASRLGINTI--------RVELEDLSF--------------QAL 190
Query: 333 VPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYI 392
P + ++R KR S+ +++ + Q T+L +++L+ E
Sbjct: 191 HP--MRAERIKRA------VSSARGHRRSAIRQ----IQTTL---QKSLDDE-------- 227
Query: 393 PGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLL 452
G+ T+ R K L SI+ KMR + ++ D R++ D + CY +L
Sbjct: 228 -GLAGTVVGRQKHLLSIYKKMRDQRKPFAEIMDVFGFRIITED---------VDSCYRIL 277
Query: 453 DIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAA 512
+VH L+ P+ G F DYI PK +GYQSLHT + G G +EVQIRT++M A +G+AA
Sbjct: 278 GVVHNLYKPVPGRFKDYIAIPKANGYQSLHTTLFGSGGMPIEVQIRTREMEAMANNGIAA 337
Query: 513 HWLYK 517
HWLYK
Sbjct: 338 HWLYK 342
>gi|384245518|gb|EIE19011.1| hypothetical protein COCSUDRAFT_67926 [Coccomyxa subellipsoidea
C-169]
Length = 700
Score = 135 bits (341), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 72/153 (47%), Positives = 94/153 (61%), Gaps = 16/153 (10%)
Query: 377 CEEALEK-------ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARAL 429
CEE+L++ + L G+ LS R K+L+ ++ KM K G+ +VYD RAL
Sbjct: 349 CEESLQRGSIEANLDQLKGRLAQTGIRGDLSGRPKNLWGVYRKMCAKGYGLDQVYDVRAL 408
Query: 430 RVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD 489
RVVV K+ CY +L VHRLW P++G F DYI + K +GYQSLHT V G D
Sbjct: 409 RVVVDTKSD---------CYEVLREVHRLWTPVEGRFKDYIRHKKDNGYQSLHTVVLGSD 459
Query: 490 GSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
G +EVQIRTQKMH AE+G+AAHW YKE+ +
Sbjct: 460 GVPMEVQIRTQKMHWIAEYGVAAHWRYKESAAR 492
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 269
LAD L MR A A E + ++ LA+RLG+W++KA+LEDL F VL P
Sbjct: 290 LADSLQAMRA------KPTAAAAAEAMGVFAPLANRLGVWSIKADLEDLAFMVLHP 339
>gi|340758948|ref|ZP_08695526.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Fusobacterium varium ATCC 27725]
gi|251835906|gb|EES64444.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Fusobacterium varium ATCC 27725]
Length = 726
Score = 135 bits (341), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 114/193 (59%), Gaps = 14/193 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E+++ A+ FA+ H GQ+RK+G+ Y+ H + +IL + K DT+VAGILHD+V
Sbjct: 21 EKIKLALYFAEECHEGQYRKSGEDYIMHPVEVTKILIDM-----KMDTDTIVAGILHDIV 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE-------- 213
+D +L I+ FGD VA LV GV++L + ++ N+ + L +
Sbjct: 76 EDTLITLADIKYNFGDTVATLVDGVTKLKSLPNGTKKQDE-NIRKMILAMAQNLRVIIIK 134
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
L+DRLHNMRT+ + P K A++QETL I+ LA RLG+ +K ELEDLC L+P+ +
Sbjct: 135 LSDRLHNMRTLKYMKPEKQIAISQETLDIYAPLAHRLGIAKIKWELEDLCLRYLKPEEYE 194
Query: 274 KMRADLASMWSPR 286
+++ + S + R
Sbjct: 195 HIKSLIDSKRNER 207
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 72/125 (57%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K YSI+ KM K +YD +R++V D G CY+ L
Sbjct: 226 GIKGNVKGRFKHFYSIYKKMYEKGKEFDDIYDLMGVRIIV-DTEGE--------CYNTLG 276
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
++H + P+ G F DYI PK + YQS+HT + GP G +E+QIRT++M AE G+AAH
Sbjct: 277 VIHSHFKPVPGRFKDYIAVPKSNNYQSIHTTIVGPQGKFIEIQIRTEEMDRVAEEGIAAH 336
Query: 514 WLYKE 518
W YKE
Sbjct: 337 WSYKE 341
>gi|389806042|ref|ZP_10203183.1| RelA/SpoT family (p)ppGpp synthetase [Rhodanobacter thiooxydans
LCS2]
gi|388446310|gb|EIM02351.1| RelA/SpoT family (p)ppGpp synthetase [Rhodanobacter thiooxydans
LCS2]
Length = 711
Score = 135 bits (341), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 83/207 (40%), Positives = 114/207 (55%), Gaps = 25/207 (12%)
Query: 392 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 451
+ G++ L+ R K +YSI+ KM+RK + +YD RA+RV+V +I CY+
Sbjct: 221 VAGIQAELAGRPKHIYSIWKKMQRKSLDFSDLYDIRAVRVLVD---------SITDCYAA 271
Query: 452 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 511
L +VH LW + GEFDDYI PK +GYQSLHTAV GP+G LEVQIRT MH E G+A
Sbjct: 272 LGVVHALWPHLPGEFDDYIARPKANGYQSLHTAVIGPEGKTLEVQIRTHAMHRANELGVA 331
Query: 512 AHWLYKETGN-------KLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQK--YSSLK 562
AHW YKE G+ K+ + + E E S+L+ + L T+L + Y
Sbjct: 332 AHWRYKEGGSADAEFEAKIAWMRKLLEPRGEDDSALAAE------LQTELLEDRVYLLTP 385
Query: 563 MGHPVIRVEGSNLLA-AVIIRVEKGGR 588
G V G+ +L A ++ E G R
Sbjct: 386 KGEVVDLARGATVLDFAYLVHTEVGHR 412
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR ALP + +A+A+ T I LA+RLG+W LK ELEDL F LQP +R
Sbjct: 132 LARQLARMRAAPALPEDERQALARLTRDIHAPLANRLGIWQLKWELEDLAFRYLQPDTYR 191
Query: 274 KM 275
++
Sbjct: 192 RI 193
>gi|373495922|ref|ZP_09586472.1| RelA/SpoT family protein [Fusobacterium sp. 12_1B]
gi|404369252|ref|ZP_10974596.1| RelA/SpoT family protein [Fusobacterium ulcerans ATCC 49185]
gi|313688538|gb|EFS25373.1| RelA/SpoT family protein [Fusobacterium ulcerans ATCC 49185]
gi|371966563|gb|EHO84049.1| RelA/SpoT family protein [Fusobacterium sp. 12_1B]
Length = 726
Score = 135 bits (340), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 114/193 (59%), Gaps = 14/193 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E+++ A+ FA+ H GQ+RK+G+ Y+ H + +IL + K DT+VAGILHD+V
Sbjct: 21 EKIKLALYFAEECHEGQYRKSGEDYIMHPVEVTKILIDM-----KMDTDTIVAGILHDIV 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE-------- 213
+D +L I+ FGD VA LV GV++L + ++ N+ + L +
Sbjct: 76 EDTLITLADIKYNFGDTVATLVDGVTKLKSLPNGTKKQDE-NIRKMILAMAQNLRVIIIK 134
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
L+DRLHNMRT+ + P K A++QETL I+ LA RLG+ +K ELEDLC L+P+ +
Sbjct: 135 LSDRLHNMRTLKYMKPEKQIAISQETLDIYAPLAHRLGIAKIKWELEDLCLRYLKPEEYE 194
Query: 274 KMRADLASMWSPR 286
+++ + S + R
Sbjct: 195 HIKSLIDSKRNER 207
Score = 105 bits (263), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 71/125 (56%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K YSI+ KM K +YD +R++V D G CY+ L
Sbjct: 226 GIKGNVKGRFKHFYSIYKKMYEKGKEFDDIYDLMGVRIIV-DTEGE--------CYNTLG 276
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
++H + P+ G F DYI PK + YQS+HT + GP G +E+QIRT+ M AE G+AAH
Sbjct: 277 VIHSHFRPVPGRFKDYIAVPKSNNYQSIHTTIVGPLGKFIEIQIRTEDMDRVAEEGIAAH 336
Query: 514 WLYKE 518
W YKE
Sbjct: 337 WSYKE 341
>gi|421190653|ref|ZP_15647949.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Oenococcus
oeni AWRIB422]
gi|421191378|ref|ZP_15648655.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Oenococcus
oeni AWRIB548]
gi|399969423|gb|EJO03763.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Oenococcus
oeni AWRIB422]
gi|399972201|gb|EJO06415.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Oenococcus
oeni AWRIB548]
Length = 748
Score = 135 bits (340), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 131/437 (29%), Positives = 186/437 (42%), Gaps = 95/437 (21%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
++V A AK+ H GQ RK+G+ Y+ H I ILA L K DT+ AG LH
Sbjct: 26 KRVDSAYQLAKKMHAGQKRKSGEDYIYHPIQVAGILADL-----KMDPDTIAAGFLH--- 77
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNM 221
D E +E VA + + + +L R H H +L
Sbjct: 78 -DVVEDTPETNDEIRQNYGDDVADI--VDGVTKLGRIHYESTEENMAENHRKLL------ 128
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLAS 281
A+A++ +I LA RL MR
Sbjct: 129 -----------LAMAKDVRVIIVKLADRL----------------------HNMR----- 150
Query: 282 MWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 341
T V P R AS+ H L + ++ + LS R
Sbjct: 151 --------------TLQVHRPEKQHRIASETLDIYAPLAHRLGLANIK---WELEDLSLR 193
Query: 342 RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 401
H +AK ++++ + DA IA + + +EK +IS I EVT
Sbjct: 194 YLDPDEYHRIAKMMHSRREER---DADIA-----SATKQIEK--VISDLKIGHFEVT--G 241
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI+ KM K ++YD A+RV+V ++ CY+ L +H W P
Sbjct: 242 RPKHIYSIYRKMTDKHKQFSEIYDLLAIRVLVD---------SVDDCYAALGTIHANWKP 292
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET-G 520
+ G F DYI PKP+GYQSLHT + GP+G LEVQIRT +MH+ AE G+AAHW YKE G
Sbjct: 293 LPGRFKDYIALPKPNGYQSLHTTIIGPNGHPLEVQIRTFEMHQVAEFGVAAHWAYKENKG 352
Query: 521 NKLQS-ISSMDESDIEA 536
++ Q+ +S D+ + A
Sbjct: 353 SEKQARVSDSDQQHLNA 369
>gi|334143852|ref|YP_004537008.1| (p)ppGpp synthetase I SpoT/RelA [Thioalkalimicrobium cyclicum ALM1]
gi|333964763|gb|AEG31529.1| (p)ppGpp synthetase I, SpoT/RelA [Thioalkalimicrobium cyclicum
ALM1]
Length = 727
Score = 135 bits (340), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 95/158 (60%), Gaps = 12/158 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+E ++ R K +YSI+ KM RK + +YD RALR+ V D + CY L
Sbjct: 227 GIEARVTGRPKHIYSIWKKMSRKTQSLDSLYDLRALRIYVKD---------VTECYRCLS 277
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH W I EFDDYI +PK +GYQS+HT V GP+G +E+QIRTQ+MH++AE+G+AAH
Sbjct: 278 LVHEKWNFIRDEFDDYITSPKDNGYQSIHTVVIGPEGKTVEIQIRTQEMHQHAEYGIAAH 337
Query: 514 WLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLD 551
W YKE G + + E+ I + L + DD D
Sbjct: 338 WKYKEGG---KGYDARLEASINSMRQLLEHRDDAEVFD 372
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 213 ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 272
+L R+ +R + P + +A ET LI+ LA+RLG+ LK ELEDL F L+P+++
Sbjct: 135 KLGYRVARLRDLKNEPEPVRKQIAAETQLIFAPLANRLGIAQLKWELEDLSFRFLEPKLY 194
Query: 273 RKMRADLA 280
+K+ +LA
Sbjct: 195 KKIATELA 202
>gi|330811209|ref|YP_004355671.1| GTP diphosphokinase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|423698765|ref|ZP_17673255.1| GTP diphosphokinase [Pseudomonas fluorescens Q8r1-96]
gi|327379317|gb|AEA70667.1| GTP diphosphokinase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|387996645|gb|EIK57975.1| GTP diphosphokinase [Pseudomonas fluorescens Q8r1-96]
Length = 748
Score = 135 bits (340), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVVADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKETGNKLQSISSMDESDI 534
W YK G ++S S+ E I
Sbjct: 366 WKYK--GTDVKSGSNHYEEKI 384
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 82/171 (47%), Gaps = 26/171 (15%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA +L+ V + L + + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLVAAVLYRGVREGQIQLPVVSQRFGTVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 210 GHEE-------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 250
G E LA+R +R + + K VA+E I+ LA RL
Sbjct: 141 GQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKSADDEKRNRVAREVFDIYAPLAHRL 200
Query: 251 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSS 301
G+ +K ELEDL F L+P +++ +A + R R+ R IT +++
Sbjct: 201 GIGHIKWELEDLSFRYLEPDQYKQ----IAKLLHER-RLDRERFITDVMTQ 246
>gi|226941695|ref|YP_002796769.1| RelA [Laribacter hongkongensis HLHK9]
gi|226716622|gb|ACO75760.1| RelA [Laribacter hongkongensis HLHK9]
Length = 736
Score = 135 bits (340), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 87/127 (68%), Gaps = 9/127 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ ++ R K +YSI+ KMR+K + ++YD RA+RV+V DK + CY++L
Sbjct: 253 GVRADVAGRAKHIYSIWKKMRKKHLDFSELYDIRAVRVLV-DK--------VSDCYAVLG 303
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW PI GEFDDYI +PK + Y+SLHTAV GP LEVQIRT MHE+AE G+AAH
Sbjct: 304 MVHSLWQPIPGEFDDYIAHPKANDYKSLHTAVIGPQDKVLEVQIRTFDMHEHAEFGVAAH 363
Query: 514 WLYKETG 520
W YKE G
Sbjct: 364 WRYKEGG 370
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 19/124 (15%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQL------------------LRRHRRINVNQGTLGHE 212
+ E+ G EVA LV GV+RL I + +R+ V +
Sbjct: 100 LTEKMGKEVADLVEGVARLGRIAEFAGQSDAVTPEARAQQAEAMRKMLLAMVADIRIVLI 159
Query: 213 ELADRLHNMRTIYALPPAKARA-VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
+LA R M + +P + R +A+ET I+ LA+RLG+W +K ELEDL F L+P
Sbjct: 160 KLAWRTQTMHWLAKVPDEQVRRRIARETQEIFAPLANRLGVWQIKWELEDLAFRHLEPDN 219
Query: 272 FRKM 275
++K+
Sbjct: 220 YKKI 223
>gi|334131928|ref|ZP_08505690.1| GTP pyrophosphokinase [Methyloversatilis universalis FAM5]
gi|333443401|gb|EGK71366.1| GTP pyrophosphokinase [Methyloversatilis universalis FAM5]
Length = 730
Score = 135 bits (340), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 93/149 (62%), Gaps = 17/149 (11%)
Query: 378 EEALEKELLISTSYI--------PGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARAL 429
E+ +E+E I+ S G++ + R K +YSI++KMR K + +VYD RAL
Sbjct: 222 EKRVEREAFIAESMARLKAELQAAGIQADIQGRPKHIYSIWNKMRAKKLEFSEVYDVRAL 281
Query: 430 RVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD 489
RV+V +++ CY L +VH+LW P+ EFDDYI PK + YQSLHTAV PD
Sbjct: 282 RVLV---------ESVRDCYGALGVVHQLWHPLPREFDDYIAQPKGNNYQSLHTAVIAPD 332
Query: 490 GSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
G +LEVQIRT MH +AE G+AAHW YKE
Sbjct: 333 GRSLEVQIRTWDMHRHAEMGVAAHWRYKE 361
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 84/175 (48%), Gaps = 26/175 (14%)
Query: 122 TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAK 181
TG+P H + I A L R T + LH+V +DA E + + +G VA+
Sbjct: 47 TGEPIGEHVLGQALICASLRLDLETRL--TALLFPLHEVQEDAGEQIATA---YGPAVAE 101
Query: 182 LVAGVSRLSYINQLLRRHRRINV-NQGTLGHE--------------------ELADRLHN 220
LVAG+ RL + + R H V Q + G++ LA R+
Sbjct: 102 LVAGLQRLDNLRLITRAHASQQVAGQDSGGNQAEVLRKMVLAMVADVRVVMLRLASRVQT 161
Query: 221 MRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
+R + A P +A+E+L I+ LA+RLG+W LK ELEDL F L+P ++++
Sbjct: 162 LRWLTAHPNDDRLQLARESLDIYAPLANRLGVWQLKWELEDLSFRFLEPDTYKRI 216
>gi|406936392|gb|EKD70123.1| hypothetical protein ACD_46C00628G0005 [uncultured bacterium]
Length = 731
Score = 135 bits (340), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 82/195 (42%), Positives = 112/195 (57%), Gaps = 16/195 (8%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
+V++A FAK AH Q R TGDPY+TH + ILA + + T++A ILHDVV+
Sbjct: 41 KVEEAYLFAKEAHGSQTRHTGDPYITHPVAVAEILAQM-----RMDPPTIMAAILHDVVE 95
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------QLLRRHRRINVNQGTLGHEE 213
D I E+FG EV+ LV GV++L+ I+ + R+ + + +
Sbjct: 96 DTPVKQAEIAEKFGQEVSDLVDGVTKLTQIHFDNYAQAQAENFRKMVMAMASDIRVILVK 155
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LADRLHNMRTIYALPP K R ++ ETL I+ +A+RLG+ A + ELEDL FA + P FR
Sbjct: 156 LADRLHNMRTIYALPPHKRRRISLETLEIFSPIANRLGMHAFRVELEDLGFATMYP--FR 213
Query: 274 KMRADLASMWSPRNR 288
D A + NR
Sbjct: 214 YKVVDRAVSKATGNR 228
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 78/120 (65%), Gaps = 9/120 (7%)
Query: 398 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 457
TLS R K +YSI+ KM +K + ++ D R++V DK + CY +L ++H
Sbjct: 252 TLSGRGKHVYSIYKKMLQKHLSFSEIMDVYGFRIIV-DK--------VDTCYRVLGVLHN 302
Query: 458 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 517
L+ PI F DYI PK +GYQSLHT + GP G +EVQIRT++MH+ AE+G+AAHWLYK
Sbjct: 303 LFKPITQRFKDYIAIPKANGYQSLHTTLFGPYGVPIEVQIRTEEMHKMAENGIAAHWLYK 362
>gi|388567354|ref|ZP_10153788.1| (p)ppGpp synthetase I SpoT/RelA [Hydrogenophaga sp. PBC]
gi|388265376|gb|EIK90932.1| (p)ppGpp synthetase I SpoT/RelA [Hydrogenophaga sp. PBC]
Length = 761
Score = 135 bits (340), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 88/144 (61%), Gaps = 14/144 (9%)
Query: 379 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 438
E L++ LL G+ + R K +YSI KMR K + +V+D RALRV+V +
Sbjct: 263 EDLQRALLAQ-----GIAAMVQGRPKHIYSIVKKMRGKALDFEQVFDIRALRVIVLETAD 317
Query: 439 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 498
CY++L VH + P+ EFDDYI PKP+GYQSLHT V+ G A E+QIR
Sbjct: 318 ---------CYAVLSFVHEHFTPVADEFDDYIAKPKPNGYQSLHTVVRDAQGRAFEIQIR 368
Query: 499 TQKMHEYAEHGLAAHWLYKETGNK 522
TQ MH++AEHG+AAHW YKE G K
Sbjct: 369 TQAMHDHAEHGVAAHWAYKEAGAK 392
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA RL +R ++ +A E+L ++ LA+RLG+W +K E+EDL F L+PQ ++
Sbjct: 182 LASRLQTLRYFASIRGDPGEILASESLHVFAPLANRLGIWQIKWEMEDLAFRFLEPQTYK 241
>gi|344208530|ref|YP_004793671.1| RelA/SpoT family protein [Stenotrophomonas maltophilia JV3]
gi|343779892|gb|AEM52445.1| RelA/SpoT family protein [Stenotrophomonas maltophilia JV3]
Length = 718
Score = 135 bits (340), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 65/139 (46%), Positives = 89/139 (64%), Gaps = 9/139 (6%)
Query: 383 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 442
K++L G++ +S R K +YSI+ KM++K + ++YD RA+RV+V D
Sbjct: 220 KKVLSRELVAQGIKAEVSGRPKHIYSIWRKMQKKRLAFDQLYDIRAVRVMVDD------- 272
Query: 443 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 502
+ CY+ L +VH LW P+ EFDDYI PK + Y+SLHTAV GP+G +EVQIRT +M
Sbjct: 273 --VAACYAALGVVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRTIEVQIRTHEM 330
Query: 503 HEYAEHGLAAHWLYKETGN 521
H AE G+AAHW YKE G
Sbjct: 331 HSQAELGVAAHWKYKEGGK 349
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 6/140 (4%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR L + RA+AQ T I LA+RLG+W LK ELEDL F L+P+ +R
Sbjct: 140 LARQLARMRAADKLDEEQRRALAQLTRDIHAPLANRLGIWQLKWELEDLAFRHLEPETYR 199
Query: 274 KMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAV 332
++ ++ R R Y + ++S + + ++ + +H+ S+ + + +
Sbjct: 200 RIAREVDETRIARER--YVENVKKVLSRELVAQGIKAE---VSGRPKHIYSIWRKMQKKR 254
Query: 333 VPFDILSDRRKRTKFLHDLA 352
+ FD L D R + D+A
Sbjct: 255 LAFDQLYDIRAVRVMVDDVA 274
>gi|254283985|ref|ZP_04958953.1| GTP pyrophosphokinase [gamma proteobacterium NOR51-B]
gi|219680188|gb|EED36537.1| GTP pyrophosphokinase [gamma proteobacterium NOR51-B]
Length = 737
Score = 135 bits (340), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 65/124 (52%), Positives = 84/124 (67%), Gaps = 9/124 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ LS R K +YSI+ KM+RK +G +VYD RALR++V + + CY L
Sbjct: 250 GVDYELSGRAKHIYSIWRKMQRKGIGFSQVYDIRALRILV---------DSTKDCYHTLG 300
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH +W I EFDDY+ +PK +GY+SLHTAV GP+G LEVQIRT +MHE AE G+ AH
Sbjct: 301 IVHSIWRNIPNEFDDYVASPKENGYRSLHTAVIGPEGKILEVQIRTHQMHEEAELGVCAH 360
Query: 514 WLYK 517
W YK
Sbjct: 361 WRYK 364
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 18/157 (11%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL-------------- 195
D +VA +L+ V + SL +++ FG V L+ GV R++ +++L
Sbjct: 77 DALVAAMLYRAVREQRLSLDVVQKSFGTGVCGLLDGVLRMAAVSELRGDSDAPVLGQSSS 136
Query: 196 ----LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLG 251
+R+ V+ + +LA+R MR + P + +AQE ++ LA RLG
Sbjct: 137 PNTNVRQMLVAMVDDVRVALLKLAERTVAMRVLRTALPEQRIPIAQEVYDVYAPLAHRLG 196
Query: 252 LWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 288
+ LK ELED F L +R++ L R+R
Sbjct: 197 IGHLKWELEDFAFRYLHEDAYRRIARLLDGRRKDRDR 233
>gi|440733401|ref|ZP_20913141.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Xanthomonas translucens DAR61454]
gi|440362375|gb|ELP99574.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Xanthomonas translucens DAR61454]
Length = 718
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/151 (46%), Positives = 93/151 (61%), Gaps = 11/151 (7%)
Query: 373 SLVACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALR 430
S VA E +E K++L G+ +S R K +YSI+ KM++K + ++YD RA+R
Sbjct: 209 SRVARERYIEAVKKILSKALSEQGLRAEISGRPKHIYSIWRKMQKKRLAFDQLYDLRAVR 268
Query: 431 VVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDG 490
V+V D + CY+ L +VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 269 VMVDD---------VAACYAALGVVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEG 319
Query: 491 SALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+EVQIRT MH AE G+AAHW YKE G
Sbjct: 320 RTIEVQIRTHDMHAQAELGVAAHWKYKEGGK 350
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 73/142 (51%), Gaps = 10/142 (7%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR LP A+ RA+AQ T I LA+RLG+W LK ELEDL F L+P +R
Sbjct: 141 LARQLAKMRVADKLPEAQRRALAQLTRDIHAPLANRLGIWQLKWELEDLAFRHLEPDTYR 200
Query: 274 KMRADLASMWSPRNRVGYSRRITTI--VSSPPLDERTASDDESFTTFDEHVLSM-KDLLE 330
++ ++ +RV R I + + S L E+ + + +H+ S+ + + +
Sbjct: 201 RIAREVDE-----SRVARERYIEAVKKILSKALSEQGLRAE--ISGRPKHIYSIWRKMQK 253
Query: 331 AVVPFDILSDRRKRTKFLHDLA 352
+ FD L D R + D+A
Sbjct: 254 KRLAFDQLYDLRAVRVMVDDVA 275
>gi|373465559|ref|ZP_09557016.1| GTP diphosphokinase [Lactobacillus kisonensis F0435]
gi|371760145|gb|EHO48845.1| GTP diphosphokinase [Lactobacillus kisonensis F0435]
Length = 748
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 125/216 (57%), Gaps = 21/216 (9%)
Query: 99 FNDE---QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
NDE QV+KA FA+ AH Q R++G+PY+TH I ILA L +TV AG
Sbjct: 26 MNDEHVKQVKKAYEFARIAHQDQKRQSGEPYITHPIQVAGILADLHMDP-----ETVSAG 80
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRRINV---NQ 206
LHDVV+D LG I E FGD+VA +V GV++LS I +L HR++ +
Sbjct: 81 FLHDVVEDTGAVLGDIRELFGDDVALIVDGVTKLSKIKYKSSQERLAENHRKLLLAMCKD 140
Query: 207 GTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAV 266
+ +LADRLHNMRT+ +L P K R +A+ETL I+ +A RLG+ +K ELED+
Sbjct: 141 IRVMIVKLADRLHNMRTLKSLRPDKQRRIAKETLEIYAPIADRLGIGTIKWELEDISLRY 200
Query: 267 LQPQIFRKMRADLASMWSPRN-RVGYSRRITTIVSS 301
L PQ + ++ + M S R+ RV Y ++ + V S
Sbjct: 201 LNPQQYYRI---VHLMNSRRDQRVDYIKKAISEVKS 233
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 76/120 (63%), Gaps = 9/120 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+ R K +YS++ KM K ++YD A+RV+VG +I+ CY++L +H
Sbjct: 244 IYGRPKHIYSVYRKMVEKHKQFSQIYDLLAIRVIVG---------SIKDCYAVLGAIHSK 294
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W P+ G F DYI PK + YQSLHT V GP+G LEVQIRT++MH AE G+AAHW YKE
Sbjct: 295 WKPMPGRFKDYIAMPKANMYQSLHTTVIGPEGKPLEVQIRTEEMHRVAEFGIAAHWAYKE 354
>gi|56479168|ref|YP_160757.1| GTP pyrophosphokinase [Aromatoleum aromaticum EbN1]
gi|56315211|emb|CAI09856.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)
[Aromatoleum aromaticum EbN1]
Length = 733
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/125 (52%), Positives = 87/125 (69%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K +YSI++KMR K + +VYD RALRV+VG+ ++ CY++L
Sbjct: 246 GIKAEVYGRPKHIYSIYNKMRAKRLDFSQVYDIRALRVLVGN---------VRDCYTVLG 296
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IV+++W PI EFDDYI PK + YQSLHTAV DG A+EVQIRT MH++AE G+AAH
Sbjct: 297 IVNQIWQPIGQEFDDYITKPKGNNYQSLHTAVLAGDGRAVEVQIRTHDMHKHAELGVAAH 356
Query: 514 WLYKE 518
W YKE
Sbjct: 357 WRYKE 361
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 92/190 (48%), Gaps = 23/190 (12%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA+ A+ A+ TG+ TH + LI +S + V+T VA +L V D
Sbjct: 32 IEKALELARGAYENHVLGTGESVWTHAMGMA-----LIAASLRLDVETRVAALLFAVGDY 86
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLR----------RHRRINVNQGTLGHEE 213
+ + ++ FGD VA+LV G+ +L+ + L R R + + + L E
Sbjct: 87 GEDPIETVTARFGDGVARLVEGLRKLNGLRLLTRMTATATAPEIRAQTEVLRKMLLAMVE 146
Query: 214 --------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFA 265
LA R +R VA+E+L I+ LA+RLG+W LK ELEDL F
Sbjct: 147 DIRVVLLRLASRTQTLRYFTEQKGEIRTDVARESLDIYAPLANRLGVWQLKWELEDLSFR 206
Query: 266 VLQPQIFRKM 275
L+P+ ++++
Sbjct: 207 FLEPETYKRI 216
>gi|42523075|ref|NP_968455.1| GTP pyrophosphokinase [Bdellovibrio bacteriovorus HD100]
gi|39575280|emb|CAE79448.1| GTP pyrophosphokinase [Bdellovibrio bacteriovorus HD100]
Length = 738
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 116/202 (57%), Gaps = 14/202 (6%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + + ++KA +F+++ H GQ R++G+PY++H + ILA +DT+ G
Sbjct: 29 YPNADLKIIEKAYSFSEKMHEGQIRRSGEPYISHPLSVAAILADF-----HLDLDTIATG 83
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSR---LSYINQLLRRHRRINVNQGTLGHE 212
+LHD V+D +L I EFGD +A LV GV++ + + N ++ I +G +
Sbjct: 84 LLHDTVEDTAATLEDIRREFGDVIAHLVDGVTKIGQMKFKNSHEKQGENIRKMIVAMGKD 143
Query: 213 ------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAV 266
+LADRLHNMRT+ +P K +A ETL I+C LA R+G+ ALK ELEDLCF
Sbjct: 144 VRVVLVKLADRLHNMRTLNFMPFEKQERIALETLEIYCPLAGRMGISALKIELEDLCFRY 203
Query: 267 LQPQIFRKMRADLASMWSPRNR 288
+P ++ ++ + + +NR
Sbjct: 204 YRPDMYYELVQQIKKTEAEQNR 225
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 107/208 (51%), Gaps = 32/208 (15%)
Query: 366 DAGIALTSLVACEEALEKELLISTSYIPGMEVT-------LSSRLKSLYSIFSKMRRKDV 418
D L + EA + + ++ G E+T + R K L+SI+ KM+ +++
Sbjct: 207 DMYYELVQQIKKTEAEQNRYIEEVKHLIGKELTKAGFRYEVYGRSKHLWSIYRKMQSRNI 266
Query: 419 GIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGY 478
+VYD A RV+V ++ CY+ L +VH LW PI G F D+I PK + Y
Sbjct: 267 DYDQVYDVLAFRVLV---------ESVAECYAALGLVHSLWKPIPGRFKDFIAMPKANNY 317
Query: 479 QSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASS 538
QSLHT V GP G +E+QIRT +MH AE G+AAHW YKE G MD+ D++ ++
Sbjct: 318 QSLHTTVMGPGGERIEIQIRTSEMHLVAEKGIAAHWKYKERG------KMMDDGDLQQAN 371
Query: 539 SLSKDTDDH----NP------LDTDLFQ 556
L H NP + TDLF+
Sbjct: 372 WLRDLVSWHQNVRNPDEFLDTVKTDLFE 399
>gi|254522748|ref|ZP_05134803.1| RelA/SpoT family protein [Stenotrophomonas sp. SKA14]
gi|219720339|gb|EED38864.1| RelA/SpoT family protein [Stenotrophomonas sp. SKA14]
Length = 718
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/139 (46%), Positives = 89/139 (64%), Gaps = 9/139 (6%)
Query: 383 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 442
K++L G++ +S R K +YSI+ KM++K + ++YD RA+RV+V D
Sbjct: 220 KKVLSRELVAQGIKAEVSGRPKHIYSIWRKMQKKRLAFDQLYDIRAVRVMVDD------- 272
Query: 443 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 502
+ CY+ L +VH LW P+ EFDDYI PK + Y+SLHTAV GP+G +EVQIRT +M
Sbjct: 273 --VAACYAALGVVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRTIEVQIRTHEM 330
Query: 503 HEYAEHGLAAHWLYKETGN 521
H AE G+AAHW YKE G
Sbjct: 331 HSQAELGVAAHWKYKEGGK 349
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 6/140 (4%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR L + RA+AQ T I LA+RLG+W LK ELEDL F L+P+ +R
Sbjct: 140 LARQLARMRAADKLDDEQRRALAQLTRDIHAPLANRLGIWQLKWELEDLAFRHLEPETYR 199
Query: 274 KMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAV 332
++ ++ R R Y + ++S + + ++ + +H+ S+ + + +
Sbjct: 200 RIAREVDETRIARER--YVENVKKVLSRELVAQGIKAE---VSGRPKHIYSIWRKMQKKR 254
Query: 333 VPFDILSDRRKRTKFLHDLA 352
+ FD L D R + D+A
Sbjct: 255 LAFDQLYDIRAVRVMVDDVA 274
>gi|408822202|ref|ZP_11207092.1| RelA/SpoT family protein [Pseudomonas geniculata N1]
Length = 706
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/139 (46%), Positives = 89/139 (64%), Gaps = 9/139 (6%)
Query: 383 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 442
K++L G++ +S R K +YSI+ KM++K + ++YD RA+RV+V D
Sbjct: 208 KKVLSRELVAQGIKAEVSGRPKHIYSIWRKMQKKRLAFDQLYDIRAVRVMVDD------- 260
Query: 443 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 502
+ CY+ L +VH LW P+ EFDDYI PK + Y+SLHTAV GP+G +EVQIRT +M
Sbjct: 261 --VAACYAALGVVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRTIEVQIRTHEM 318
Query: 503 HEYAEHGLAAHWLYKETGN 521
H AE G+AAHW YKE G
Sbjct: 319 HSQAELGVAAHWKYKEGGK 337
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 6/140 (4%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR L + RA+AQ T I LA+RLG+W LK ELEDL F L+P+ +R
Sbjct: 128 LARQLARMRAADKLDDEQRRALAQLTRDIHAPLANRLGIWQLKWELEDLAFRHLEPETYR 187
Query: 274 KMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAV 332
++ ++ R R Y + ++S + + ++ + +H+ S+ + + +
Sbjct: 188 RIAREVDETRIARER--YVENVKKVLSRELVAQGIKAE---VSGRPKHIYSIWRKMQKKR 242
Query: 333 VPFDILSDRRKRTKFLHDLA 352
+ FD L D R + D+A
Sbjct: 243 LAFDQLYDIRAVRVMVDDVA 262
>gi|375091649|ref|ZP_09737938.1| RelA/SpoT family protein [Helcococcus kunzii ATCC 51366]
gi|374563171|gb|EHR34493.1| RelA/SpoT family protein [Helcococcus kunzii ATCC 51366]
Length = 719
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 88/134 (65%), Gaps = 9/134 (6%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
++ T++ R K +YSI++KM+++D I ++D A+RV+V D I CY++L I
Sbjct: 227 IKFTMTGRPKGIYSIYNKMKKQDTSIDNIFDLIAIRVIVKD---------INQCYAVLGI 277
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW PI G F DYI PKP+ YQSLHT V G G EVQIRT++MH+ AE G+A+HW
Sbjct: 278 VHNLWKPIPGRFKDYIAMPKPNFYQSLHTTVIGEKGQIFEVQIRTEEMHKNAEFGIASHW 337
Query: 515 LYKETGNKLQSISS 528
YKE K+ ++ +
Sbjct: 338 QYKEGKKKVSNLDN 351
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 103/199 (51%), Gaps = 14/199 (7%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
N E + KA AK H GQ R +G+ Y+ H + IL+ L +T+ AG++HD
Sbjct: 17 NIELITKAYNLAKEKHKGQVRNSGEEYIVHPVEVSIILSTLELDD-----ETICAGLMHD 71
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLGHE------ 212
V++D + + +EFGDE+ LV GV++L + + +I ++ + L
Sbjct: 72 VLEDTDFTREEMAQEFGDEITALVDGVTKLKNLKYKTKEETQIESIRKMVLAMANDIRVI 131
Query: 213 --ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
+LADRLHNMRT+ K + A ETL I+ LA RLG+ ++K ELEDLC + P
Sbjct: 132 IIKLADRLHNMRTLEYKDRDKQISTANETLEIYVPLAHRLGINSIKWELEDLCLRYIDPI 191
Query: 271 IFRKMRADLASMWSPRNRV 289
+ + + S R ++
Sbjct: 192 SYYSVAQQIDQKRSEREKI 210
>gi|358637763|dbj|BAL25060.1| GTP pyrophosphokinase [Azoarcus sp. KH32C]
Length = 738
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/125 (52%), Positives = 87/125 (69%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K +YSI++KMR K + +VYD RALRV+V + ++ CY++L
Sbjct: 246 GIKAEVYGRPKHIYSIYNKMRAKRLDFSQVYDIRALRVLVAE---------VRDCYTVLG 296
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IV+++W PI EFDDYI NPK + YQSLHTAV DG ALEVQIRT MH++AE G+AAH
Sbjct: 297 IVNQIWQPIAQEFDDYISNPKGNNYQSLHTAVLAGDGRALEVQIRTYDMHKHAELGVAAH 356
Query: 514 WLYKE 518
W YKE
Sbjct: 357 WRYKE 361
Score = 55.8 bits (133), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 90/208 (43%), Gaps = 31/208 (14%)
Query: 91 VDVTGYPIFNDEQ--VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRA 148
+D+ + DE+ +++A+ A+ + TG+ TH I LI +S +
Sbjct: 17 IDLLADGLSADERRLIEQALELAEGVYESHVLGTGESVWTHAIGMA-----LIAASLRLD 71
Query: 149 VDTVVAGILH---DVVDDACESLGSIEEEFGDEVAKLV------------------AGVS 187
+T +A +L D +DDA E + + FG V LV A
Sbjct: 72 AETRMAALLFAVGDYIDDAVEIVST---RFGAPVGHLVDGLRRLNGLRLLTRMTAKATAP 128
Query: 188 RLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 247
+ ++LR+ V + LA R +R VA+E+L I+ LA
Sbjct: 129 EIRAQTEVLRKMLLAMVEDIRVVLLRLASRTQTLRYFTEHNVEVRVDVARESLDIYAPLA 188
Query: 248 SRLGLWALKAELEDLCFAVLQPQIFRKM 275
+RLG+W LK ELEDL F L+P ++++
Sbjct: 189 NRLGVWQLKWELEDLSFRFLEPDTYKRI 216
>gi|74317776|ref|YP_315516.1| GTP diphosphokinase, RelA/SpoT protein [Thiobacillus denitrificans
ATCC 25259]
gi|74057271|gb|AAZ97711.1| GTP diphosphokinase, RelA/SpoT protein [Thiobacillus denitrificans
ATCC 25259]
Length = 722
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/139 (48%), Positives = 91/139 (65%), Gaps = 9/139 (6%)
Query: 384 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 443
E L + + G+E ++ R K + SI +KMRRK + ++YD RA+RV+V +
Sbjct: 235 ERLKAELALHGIEAEVTGRPKHIASIVNKMRRKHLSFEQLYDIRAVRVLVRQEID----- 289
Query: 444 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 503
CY++L +VH LW PI GEFDDYI PK + Y+SLHTAV GP+ ALEVQIRT MH
Sbjct: 290 ----CYTVLGLVHNLWQPIPGEFDDYISQPKSNDYRSLHTAVIGPEDRALEVQIRTFDMH 345
Query: 504 EYAEHGLAAHWLYKETGNK 522
+AE G+AAHW YKE+G +
Sbjct: 346 RHAELGVAAHWRYKESGKQ 364
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 31/166 (18%)
Query: 140 LIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL--LR 197
LI + K D V A +LH + D E ++E F + A+L GV+ ++ I L
Sbjct: 59 LIAAELKVGADAVAAALLHACLGDEAE----MDERF-NSAAQLARGVAAMARIESLAATT 113
Query: 198 RHRRIN-------VNQGTLGHEE--------LADRLHNMRTIYALPP---------AKAR 233
+RI+ + Q L E LA+R H +R + P A
Sbjct: 114 TDKRIDPHAQLEALRQMVLAMVEDIRVVLLKLAERTHALRCAASPAPEGDDPDERAALRE 173
Query: 234 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 279
A+ Q+ ++ LA+RLG+W +K E+ED F L+P+ +R + A L
Sbjct: 174 ALGQQARELFAPLANRLGVWQIKWEMEDWAFRYLEPETYRTIAAQL 219
>gi|146296035|ref|YP_001179806.1| (p)ppGpp synthetase I SpoT/RelA [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409611|gb|ABP66615.1| (p)ppGpp synthetase I, SpoT/RelA [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 722
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 117/207 (56%), Gaps = 16/207 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA FAK+ H GQ R +G+PY+ H + ILA L + + ++VAG+LHDVV+D
Sbjct: 24 IKKAYEFAKKYHDGQERSSGEPYIVHPLEVALILADL-----ELDIASIVAGLLHDVVED 78
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRL------SYINQLLRRHRRINVNQGT---LGHEEL 214
S IE+EFG E+A LV GV++L S + Q +R++ + + +L
Sbjct: 79 TSASPQEIEQEFGGEIASLVDGVTKLGKLEFTSKLEQQAENYRKMLIAMAKDIRVILIKL 138
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHNMRT+ LPP K R AQET+ I+ LA RLG+ +K ELEDL L P+ +
Sbjct: 139 ADRLHNMRTLKYLPPEKQRQKAQETIDIYAPLAHRLGISKIKWELEDLALRYLDPEGYYD 198
Query: 275 MRADLASMWSPRNRVGYSRRITTIVSS 301
+ +A R Y +RI ++S
Sbjct: 199 LVEKIAKKRVEREE--YIQRIINLISE 223
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 82/135 (60%), Gaps = 14/135 (10%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+ R K YSI+ KM+++ + ++YD A+R++V +++ CY +L I+H L
Sbjct: 235 IDGRPKHFYSIYRKMKQQGKTLEEIYDLFAIRIIVN---------SVKDCYGVLGIIHTL 285
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
+ P+ G F DYI PKP+ YQSLHT V GP+G EVQIRT MH AE+G+AAHW YKE
Sbjct: 286 FKPMPGRFKDYIAMPKPNMYQSLHTTVIGPEGEPFEVQIRTFDMHRTAEYGIAAHWKYKE 345
Query: 519 TGNKLQSISSMDESD 533
I S DE +
Sbjct: 346 G-----RIKSTDEDE 355
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 716 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 775
+ K LR +L W+++L+ +S K N D V V P G+++ L G
Sbjct: 354 DEKFAWLRELLEWQKELKDAKEFMESL---KINLFSDEV------FVFTPKGDVISLPQG 404
Query: 776 STAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
ST D A ++G + VNG+LV + ELK+GDIVE+
Sbjct: 405 STPIDFAYAIHSEIGNKMAGAKVNGKLVPIDYELKNGDIVEI 446
>gi|194366871|ref|YP_002029481.1| RelA/SpoT family protein [Stenotrophomonas maltophilia R551-3]
gi|194349675|gb|ACF52798.1| RelA/SpoT family protein [Stenotrophomonas maltophilia R551-3]
Length = 718
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/139 (46%), Positives = 88/139 (63%), Gaps = 9/139 (6%)
Query: 383 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 442
K++L G+ +S R K +YSI+ KM++K + ++YD RA+RV+V D
Sbjct: 220 KKVLSRELVAQGIRAEVSGRPKHIYSIWRKMQKKRLAFDQLYDIRAVRVMVDD------- 272
Query: 443 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 502
+ CY+ L +VH LW P+ EFDDYI PK + Y+SLHTAV GP+G +EVQIRT +M
Sbjct: 273 --VAACYAALGVVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRTIEVQIRTHEM 330
Query: 503 HEYAEHGLAAHWLYKETGN 521
H AE G+AAHW YKE G
Sbjct: 331 HSQAELGVAAHWKYKEGGK 349
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 6/140 (4%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR L + RA+AQ T I LA+RLG+W LK ELEDL F L+P+ +R
Sbjct: 140 LARQLARMRAADKLDDEQRRALAQLTRDIHAPLANRLGIWQLKWELEDLAFRHLEPETYR 199
Query: 274 KMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAV 332
++ ++ R R Y + ++S + + ++ + +H+ S+ + + +
Sbjct: 200 RIAREVDETRIARER--YVENVKKVLSRELVAQGIRAE---VSGRPKHIYSIWRKMQKKR 254
Query: 333 VPFDILSDRRKRTKFLHDLA 352
+ FD L D R + D+A
Sbjct: 255 LAFDQLYDIRAVRVMVDDVA 274
>gi|300113863|ref|YP_003760438.1| (p)ppGpp synthetase I [Nitrosococcus watsonii C-113]
gi|299539800|gb|ADJ28117.1| (p)ppGpp synthetase I, SpoT/RelA [Nitrosococcus watsonii C-113]
Length = 714
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 86/125 (68%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K LYSI+ KM+ K++ H+++D A RV+V D ++ CY+ L
Sbjct: 226 GIQGQISGRPKHLYSIWKKMQAKNLAFHQLFDVHAFRVIVVD---------VRDCYATLS 276
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW PI EFDDYI +PKP+GY+SLHTAV P G +E+QIR+ +MHE +E G+A+H
Sbjct: 277 LVHTLWTPIPEEFDDYIAHPKPNGYRSLHTAVLDPQGKPMEIQIRSLQMHEESELGVASH 336
Query: 514 WLYKE 518
W YKE
Sbjct: 337 WRYKE 341
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 23/158 (14%)
Query: 149 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 208
+T +AG+L ++ + + + +L+ G RL+ + +H R N +
Sbjct: 57 TETQIAGLLLPAMEAGLLKREIVTKNLAPTITRLLRGSERLAVL-----KHYRNNSEKDP 111
Query: 209 LGHEEL------------------ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 250
+ E+L AD L+ +R A + +AQETL I+ LA+RL
Sbjct: 112 IQAEKLRKMLLAIVEDPRVVLVRLADHLYRLRNANNAAIATRQTLAQETLDIFAPLANRL 171
Query: 251 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 288
G+W LK ELEDL LQPQI++++ L R R
Sbjct: 172 GIWQLKWELEDLALRYLQPQIYQRLTKALDKRQVDRER 209
>gi|256822070|ref|YP_003146033.1| (p)ppGpp synthetase I SpoT/RelA [Kangiella koreensis DSM 16069]
gi|256795609|gb|ACV26265.1| (p)ppGpp synthetase I, SpoT/RelA [Kangiella koreensis DSM 16069]
Length = 736
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/123 (51%), Positives = 82/123 (66%), Gaps = 9/123 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+S R+K +YSI+ KM RK VG ++YD RA+R++V +Q CY L IVH
Sbjct: 253 VSGRVKHIYSIWKKMTRKKVGFEEIYDVRAVRILV---------ERVQDCYGALGIVHGE 303
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W I EFDDY+ PK +GY+S+HTAV GP+G LE+QIRT +MHE +E G+AAHW YKE
Sbjct: 304 WQHIPKEFDDYVATPKENGYRSIHTAVVGPEGKILEIQIRTFQMHEESEKGIAAHWAYKE 363
Query: 519 TGN 521
N
Sbjct: 364 GAN 366
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 15/154 (9%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL-------------- 195
DT+ A IL V + +I+++ G +A LV G ++ + L
Sbjct: 78 DTLTAAILLPSVIAGSVKIETIKDKVGSTIAGLVEGAGQMEAMRSLQQETGAENDQQQVE 137
Query: 196 -LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 254
LR+ VN + +LADR+ ++R I A+ET I+ LA+RLG+
Sbjct: 138 SLRKMLLGMVNDARVVLLKLADRVVSLRHIKDTNRETQLTFARETKNIFAPLANRLGIGQ 197
Query: 255 LKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 288
LK ELEDL F L+P+ + + +L R R
Sbjct: 198 LKWELEDLSFRYLEPEAYLSIAKNLKEKRVDRER 231
>gi|388456559|ref|ZP_10138854.1| GTP pyrophosphokinase [Fluoribacter dumoffii Tex-KL]
Length = 734
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/121 (55%), Positives = 83/121 (68%), Gaps = 9/121 (7%)
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K + SI+ KM RK+V + ++YDA A+RV+V + P CY +L +VH LW
Sbjct: 257 RSKHINSIYKKMTRKNVSLDEIYDATAVRVLVDTQ------PQ---CYEVLGMVHTLWKQ 307
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
I EFDDYI+NPK +GYQSLHTAVQGP+G EVQIRT MH+ AE G+AAHW YKE G
Sbjct: 308 IPAEFDDYIINPKSNGYQSLHTAVQGPEGRVFEVQIRTFHMHDLAEMGVAAHWKYKEGGF 367
Query: 522 K 522
K
Sbjct: 368 K 368
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 102/209 (48%), Gaps = 21/209 (10%)
Query: 95 GYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVA 154
GY + N E ++ A ++ A +TG C+ G I+A L+ + + +T+ A
Sbjct: 29 GY-LENLELIRSACTLSQLAGQEHATETGQS----CLQQGLIMADLL-ADLQVDPETLAA 82
Query: 155 GILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL---------------LRRH 199
I+ + V A S+ + E+ G +AKLV G+ R+S ++ +R+
Sbjct: 83 AIIFENVHYADLSIDDVAEQLGPNIAKLVKGIERMSAMHSFQGLGKYPQNKQQIDNIRKM 142
Query: 200 RRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAEL 259
V+ + +LA+RL +R+ L + +A ET+ I+ LA+RLG+ A+K E+
Sbjct: 143 LLAMVDDVRVVLIKLAERLCVLRSATHLSEELRKQLATETMEIYAPLANRLGIGAIKWEM 202
Query: 260 EDLCFAVLQPQIFRKMRADLASMWSPRNR 288
EDL F L P+ ++ + L + R++
Sbjct: 203 EDLAFRHLHPEDYKAIAKGLKAKRLERDQ 231
>gi|309792557|ref|ZP_07687019.1| RelA/SpoT family protein [Oscillochloris trichoides DG-6]
gi|308225371|gb|EFO79137.1| RelA/SpoT family protein [Oscillochloris trichoides DG6]
Length = 809
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 91/140 (65%), Gaps = 12/140 (8%)
Query: 379 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 438
+ALEKE G+ +S R K +YSI+ KM RK + + ++YD A+RV++ +++
Sbjct: 304 DALEKE---------GISAQVSGRPKHIYSIWRKMDRKGLPLERIYDQLAVRVIIQERDP 354
Query: 439 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 498
A+ CY +L +VH LW P+ EFDDYI PK S YQSLHT V P G+ EVQIR
Sbjct: 355 ER---AVGICYRVLGVVHMLWTPVLSEFDDYIAVPKESSYQSLHTTVLIPGGTPCEVQIR 411
Query: 499 TQKMHEYAEHGLAAHWLYKE 518
T++MH+ AEHG+AAHW YKE
Sbjct: 412 TEEMHQIAEHGIAAHWRYKE 431
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 109/195 (55%), Gaps = 14/195 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+++A A A AH GQ+R++G+ Y+ H + IL L + +++ A +LHDVV+D
Sbjct: 105 IRRAYALALIAHAGQYRQSGEAYIDHPVAVASILLEL-----RLDAESIAAALLHDVVED 159
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRR------HRRI---NVNQGTLGHEEL 214
L + +F +A LV GV++LS + + +R++ + + +L
Sbjct: 160 TGVQLDLVRNQFNGCIAHLVDGVTKLSGLENKTKEELQAGSYRKLIIATADDPRVILIKL 219
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHNMRT+ A PP K R VA+ETL I+ LA RLG+W +K+ELEDL F + P +++
Sbjct: 220 ADRLHNMRTLGATPPHKQRRVARETLDIYAPLAHRLGMWQVKSELEDLAFKAMNPDRYQE 279
Query: 275 MRADLASMWSPRNRV 289
+ L R R+
Sbjct: 280 IAQGLTLRKEARERI 294
>gi|319943391|ref|ZP_08017673.1| GTP diphosphokinase [Lautropia mirabilis ATCC 51599]
gi|319743206|gb|EFV95611.1| GTP diphosphokinase [Lautropia mirabilis ATCC 51599]
Length = 791
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K LYSI +K+R K + + K++D RALRV+V + CY+ LD
Sbjct: 284 GIQAQVKGRSKHLYSIHNKLRAKHLSLEKLHDLRALRVMV---------ETLADCYATLD 334
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH+ W+P E DDYI +PKP+GYQSLHT V DG +EVQIRT+ MHE AE+GLAAH
Sbjct: 335 LVHQRWVPEMDELDDYIADPKPNGYQSLHTVVMADDGRPMEVQIRTRAMHEAAEYGLAAH 394
Query: 514 WLYKE 518
W YKE
Sbjct: 395 WRYKE 399
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 90/228 (39%), Gaps = 50/228 (21%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQ--FRKTGDPYLTHC-IHTGRILAMLIPSSGKRAVDTVV 153
PI Q A AF A HG+ +R +G L + GR LA ++ G + T V
Sbjct: 28 PILGTSQEMLAWAFDWLAAHGEGPWRVSGHGALGEARLKHGRGLAAVLELQGADPI-TRV 86
Query: 154 AGIL--HDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN----------------QL 195
G+L D D E + EE G + L+A RL ++ ++
Sbjct: 87 LGLLVCSDPWPDQAELDVQLGEELGAYLGTLLANCQRLMSLSFSALIGSQGAPGQSQPEV 146
Query: 196 LRRHRRINVNQGTLGHEELADRLHNMRTIYA----------------------------L 227
LRR + LA L ++R + A +
Sbjct: 147 LRRMTLAMARDVRVVMVRLASALQSLRHVAAHRGTGDDAEGQGSSLAKGLVEPGVSVAPV 206
Query: 228 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
A + +AQE + + LA+RLGL+ +K E+EDL F L+P +R++
Sbjct: 207 SEADVQGLAQEAMQVLAPLANRLGLYRIKWEMEDLAFRCLEPARYREL 254
>gi|297538564|ref|YP_003674333.1| (p)ppGpp synthetase I SpoT/RelA [Methylotenera versatilis 301]
gi|297257911|gb|ADI29756.1| (p)ppGpp synthetase I, SpoT/RelA [Methylotenera versatilis 301]
Length = 739
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 88/126 (69%), Gaps = 9/126 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
++ ++ R K +YSI KM+ K + +++YD RA+R++V + I+ CY++L +
Sbjct: 257 IKAEVTGRPKHIYSIIKKMKSKRLDFNELYDVRAVRILVDE---------IKDCYTVLGM 307
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
+H LW PI GEFDDYI PK + Y+SLHTAV GP G ALEVQIRT +MH+++E G+AAHW
Sbjct: 308 IHNLWQPIPGEFDDYIARPKSNNYRSLHTAVSGPRGLALEVQIRTVEMHQHSELGVAAHW 367
Query: 515 LYKETG 520
YKE G
Sbjct: 368 RYKEGG 373
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 110/244 (45%), Gaps = 33/244 (13%)
Query: 122 TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAK 181
TG P L H + IL + V+T+ A ILH V + + ++E +FG +
Sbjct: 56 TGTPLLQHALGAATILIDM-----NMDVETIAATILHAVPERLVDWRTALETQFGSNIVG 110
Query: 182 LVAGVSRLSYINQL----------------------LRRHRRINVNQGTLGHEELADRLH 219
LV G+SR+ I LR+ V + +LA+R H
Sbjct: 111 LVEGISRMEQIQAFSEIEGLHDPDLKNGDHAQQVESLRKMLLAMVQDIRVVLIKLAERTH 170
Query: 220 NMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 279
+R + P++ + +AQE+ I+ LA+RLG+W +K ELEDL L+PQ+++ ++
Sbjct: 171 TLRCLSGASPSQQKRIAQESKGIFAPLANRLGVWQIKWELEDLSLRYLEPQLYK----EV 226
Query: 280 ASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLS-MKDLLEAVVPFDIL 338
A M R RV + I +V+ + A T +H+ S +K + + F+ L
Sbjct: 227 AKMLDER-RVDREQYIIDVVNQLKYELSHAEIKAEVTGRPKHIYSIIKKMKSKRLDFNEL 285
Query: 339 SDRR 342
D R
Sbjct: 286 YDVR 289
>gi|302877551|ref|YP_003846115.1| RelA/SpoT family protein [Gallionella capsiferriformans ES-2]
gi|302580340|gb|ADL54351.1| RelA/SpoT family protein [Gallionella capsiferriformans ES-2]
Length = 645
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 92/141 (65%), Gaps = 12/141 (8%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+E ++ R K +YSI +KM+RK + ++YD RA+R++V D +Q CY+ L
Sbjct: 246 GIEAEVTGRPKHIYSIINKMKRKHLAFDELYDVRAVRILVDD---------VQSCYASLS 296
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW I E+DDYI PK + Y+SLHTAV GP EVQIRT++MH+Y+E G+AAH
Sbjct: 297 LVHDLWTQIGSEYDDYIARPKSNNYRSLHTAVIGPREQNFEVQIRTREMHQYSELGVAAH 356
Query: 514 WLYKETGNKLQSISSMDESDI 534
W YKE G ++ + +DE I
Sbjct: 357 WRYKEGG---KTDAKLDEKII 374
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 124/270 (45%), Gaps = 38/270 (14%)
Query: 98 IFNDEQVQ---KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVA 154
+F+ E++ +A A A+ + GQ TG P + H + + IL + +T+ A
Sbjct: 23 LFSPEEIDVIARACAVAEPLYRGQTELTGTPLMQHALGSASILIGMNMDH-----ETIAA 77
Query: 155 GILHDV---VDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQ----------------- 194
ILH V +DD E L + +FG V LV G+SRL I Q
Sbjct: 78 TILHAVPEYLDDWAEKLKT---DFGAPVMALVEGISRLEQIKQFRELRSTDKKIDNSQQI 134
Query: 195 -LLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 253
+LR+ V+ + +LA+R +R + P + + +AQET ++ LA+RLG+W
Sbjct: 135 DVLRKMLLAMVSDIRVVLIKLAERTQTLRCLSGASPDEQKLIAQETQSLFAPLANRLGVW 194
Query: 254 ALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDE 313
+K ELEDL L P +++++ A + R RV R I +V A +
Sbjct: 195 QIKWELEDLSVRYLDPVLYKQV----ARLLDER-RVDRERYIDDVVQQLKRTLSAAGIEA 249
Query: 314 SFTTFDEHVLSMKDLLEAV-VPFDILSDRR 342
T +H+ S+ + ++ + FD L D R
Sbjct: 250 EVTGRPKHIYSIINKMKRKHLAFDELYDVR 279
>gi|438000121|ref|YP_007183854.1| hypothetical protein CKBE_00588 [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451813053|ref|YP_007449506.1| GTP pyrophosphokinase [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
gi|429339355|gb|AFZ83777.1| hypothetical protein CKBE_00588 [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451779022|gb|AGF49902.1| GTP pyrophosphokinase [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
Length = 340
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ ++ RLK +YSI++KM K+V K+YD ALR+VV D ++ CY +LD
Sbjct: 210 GIKAEITGRLKHIYSIWNKMLIKNVDFAKLYDLSALRIVVKD---------VKTCYMVLD 260
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH+LW I EFDDYI PKP+GYQSLHT V +E+QIRT MH +AE+GLAAH
Sbjct: 261 IVHKLWSHIPEEFDDYISRPKPNGYQSLHTVVIDKYNYLIEIQIRTGDMHNFAEYGLAAH 320
Query: 514 WLYKE 518
W YK+
Sbjct: 321 WYYKK 325
>gi|386719610|ref|YP_006185936.1| GTP pyrophosphokinase [Stenotrophomonas maltophilia D457]
gi|384079172|emb|CCH13770.1| GTP pyrophosphokinase [Stenotrophomonas maltophilia D457]
Length = 677
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/139 (46%), Positives = 88/139 (63%), Gaps = 9/139 (6%)
Query: 383 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 442
K++L G+ +S R K +YSI+ KM++K + ++YD RA+RV+V D
Sbjct: 179 KKVLSRELVAQGIRAEVSGRPKHIYSIWRKMQKKRLAFDQLYDIRAVRVMVDD------- 231
Query: 443 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 502
+ CY+ L +VH LW P+ EFDDYI PK + Y+SLHTAV GP+G +EVQIRT +M
Sbjct: 232 --VAACYAALGVVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRTIEVQIRTHEM 289
Query: 503 HEYAEHGLAAHWLYKETGN 521
H AE G+AAHW YKE G
Sbjct: 290 HSQAELGVAAHWKYKEGGK 308
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 6/140 (4%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR L + RA+AQ T I LA+RLG+W LK ELEDL F L+P+ +R
Sbjct: 99 LARQLARMRAADKLDDEQRRALAQLTRDIHAPLANRLGIWQLKWELEDLAFRHLEPETYR 158
Query: 274 KMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAV 332
++ ++ R R Y + ++S + + ++ + +H+ S+ + + +
Sbjct: 159 RIAREVDETRIARER--YVENVKKVLSRELVAQGIRAE---VSGRPKHIYSIWRKMQKKR 213
Query: 333 VPFDILSDRRKRTKFLHDLA 352
+ FD L D R + D+A
Sbjct: 214 LAFDQLYDIRAVRVMVDDVA 233
>gi|325923889|ref|ZP_08185489.1| (p)ppGpp synthetase, RelA/SpoT family [Xanthomonas gardneri ATCC
19865]
gi|325545625|gb|EGD16879.1| (p)ppGpp synthetase, RelA/SpoT family [Xanthomonas gardneri ATCC
19865]
Length = 729
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 92/149 (61%), Gaps = 11/149 (7%)
Query: 375 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 432
VA E LE K L ++ G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 222 VARERYLETVKRTLSTSLTQQGLRAEVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 281
Query: 433 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 492
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 282 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVLGPEGRT 332
Query: 493 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 333 IEIQIRTHEMHAQAELGVAAHWKYKEGGK 361
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 38/62 (61%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR L + RA+AQ T I LA+RLG+W +K ELEDL F L+P +R
Sbjct: 152 LARQLARMRVADRLSEEQRRALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPDTYR 211
Query: 274 KM 275
++
Sbjct: 212 RI 213
>gi|192360692|ref|YP_001983035.1| GTP pyrophosphokinase [Cellvibrio japonicus Ueda107]
gi|190686857|gb|ACE84535.1| GTP pyrophosphokinase [Cellvibrio japonicus Ueda107]
Length = 748
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 92/138 (66%), Gaps = 9/138 (6%)
Query: 385 LLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPA 444
LL + + G++ +S R K +YSI+ KM+RK + +VYD RA+R++V P
Sbjct: 250 LLRNELHKAGIDGEVSGRAKHIYSIWRKMQRKGIPFSQVYDIRAVRILV---------PT 300
Query: 445 IQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHE 504
++ CY++L IVH LW I EFDDYI +PK +GY+SLHTAV GP+ LE+QIRT++MHE
Sbjct: 301 VRDCYAVLGIVHSLWRNIPHEFDDYIASPKENGYRSLHTAVWGPENKVLEIQIRTREMHE 360
Query: 505 YAEHGLAAHWLYKETGNK 522
+E G+ AHW YK T K
Sbjct: 361 ESELGVCAHWRYKGTDTK 378
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 77/145 (53%), Gaps = 19/145 (13%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN-------------QLL 196
D +VA +L+ V + +L I++ FGD VAKLV GV R++ I+ Q +
Sbjct: 85 DALVAAMLYRAVRENKVALPEIQKHFGDTVAKLVKGVLRMAAISYQRKEGEERVLGSQAV 144
Query: 197 RRHRRIN------VNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 250
+ +I V+ + +LA+R +R++ P + R VA+E I+ LA RL
Sbjct: 145 EQAEKIRKMLVAMVDDVRVALIKLAERTCAIRSVKNASPDRRRQVAREVADIYAPLAHRL 204
Query: 251 GLWALKAELEDLCFAVLQPQIFRKM 275
G+ +K ELEDL F LQP+ ++++
Sbjct: 205 GIGHIKWELEDLSFRYLQPEEYKRI 229
>gi|89094556|ref|ZP_01167494.1| GTP pyrophosphokinase [Neptuniibacter caesariensis]
gi|89081155|gb|EAR60389.1| GTP pyrophosphokinase [Oceanospirillum sp. MED92]
Length = 754
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 102/156 (65%), Gaps = 11/156 (7%)
Query: 378 EEALEKELLISTSYIPGMEVT--LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGD 435
+E +++ +L S + G+ + +S R K +YSI+ KM+RK++ +VYD RA+R++V
Sbjct: 240 QEYIDRVVLRLESELEGVNIDGDVSGRAKHIYSIWRKMQRKNIEFSQVYDVRAVRILV-- 297
Query: 436 KNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEV 495
P + CY++L IVH LW I EFDDY+ +PKP+GY+SLHTAV GP+G LE+
Sbjct: 298 -------PHSRDCYAVLGIVHSLWRNIPHEFDDYVASPKPNGYRSLHTAVFGPEGKVLEI 350
Query: 496 QIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDE 531
QIRT MHE AE G+ AH LYK T + +S + D+
Sbjct: 351 QIRTYDMHEEAELGVCAHHLYKGTDTRSKSDAYEDK 386
Score = 47.4 bits (111), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 27/149 (18%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
+T++A IL+ V + + + ++FG +A+++ GV +++ I R++ RI+ L
Sbjct: 84 ETLIAAILYRGVRERKIPIERVRKQFGKSIAQMIMGVLQMAAIGS--RKNPRID--DSVL 139
Query: 210 GHE-----------------------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSL 246
G + ++A+R +R + K VA+E I+ L
Sbjct: 140 GSDTTQMDNVRKMLVAMIDDVRVALIKIAERTCAIRGVKDGSRRKRYLVAREVFDIYAPL 199
Query: 247 ASRLGLWALKAELEDLCFAVLQPQIFRKM 275
A RLG+ +K ELEDL F L+P ++ +
Sbjct: 200 AHRLGIGHIKWELEDLSFRYLKPNDYKHI 228
>gi|424669853|ref|ZP_18106878.1| RelA/SpoT family protein [Stenotrophomonas maltophilia Ab55555]
gi|401071924|gb|EJP80435.1| RelA/SpoT family protein [Stenotrophomonas maltophilia Ab55555]
Length = 706
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 84/128 (65%), Gaps = 9/128 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM++K + ++YD RA+RV+V D + CY+ L
Sbjct: 219 GIHAEVSGRPKHIYSIWRKMQKKRLAFDQLYDIRAVRVMVDD---------VAACYAALG 269
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW P+ EFDDYI PK + Y+SLHTAV GP+G +EVQIRT +MH AE G+AAH
Sbjct: 270 VVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRTIEVQIRTHEMHSQAELGVAAH 329
Query: 514 WLYKETGN 521
W YKE G
Sbjct: 330 WKYKEGGK 337
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR L + RA+AQ T I LA+RLG+W LK ELEDL F L+P+ +R
Sbjct: 128 LARQLARMRAADKLDDEQRRALAQLTRDIHAPLANRLGIWQLKWELEDLAFRHLEPETYR 187
Query: 274 KM 275
++
Sbjct: 188 RI 189
>gi|190575543|ref|YP_001973388.1| GTP pyrophosphokinase [Stenotrophomonas maltophilia K279a]
gi|190013465|emb|CAQ47100.1| putative GTP pyrophosphokinase [Stenotrophomonas maltophilia K279a]
Length = 718
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 84/128 (65%), Gaps = 9/128 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM++K + ++YD RA+RV+V D + CY+ L
Sbjct: 231 GIHAEVSGRPKHIYSIWRKMQKKRLAFDQLYDIRAVRVMVDD---------VAACYAALG 281
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW P+ EFDDYI PK + Y+SLHTAV GP+G +EVQIRT +MH AE G+AAH
Sbjct: 282 VVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRTIEVQIRTHEMHSQAELGVAAH 341
Query: 514 WLYKETGN 521
W YKE G
Sbjct: 342 WKYKEGGK 349
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR L + RA+AQ T I LA+RLG+W LK ELEDL F L+P+ +R
Sbjct: 140 LARQLARMRAADKLDDEQRRAMAQLTRDIHAPLANRLGIWQLKWELEDLAFRHLEPETYR 199
Query: 274 KM 275
++
Sbjct: 200 RI 201
>gi|456734351|gb|EMF59167.1| GTP pyrophosphokinase [Stenotrophomonas maltophilia EPM1]
Length = 677
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 84/128 (65%), Gaps = 9/128 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM++K + ++YD RA+RV+V D + CY+ L
Sbjct: 190 GIHAEVSGRPKHIYSIWRKMQKKRLAFDQLYDIRAVRVMVDD---------VAACYAALG 240
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW P+ EFDDYI PK + Y+SLHTAV GP+G +EVQIRT +MH AE G+AAH
Sbjct: 241 VVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRTIEVQIRTHEMHSQAELGVAAH 300
Query: 514 WLYKETGN 521
W YKE G
Sbjct: 301 WKYKEGGK 308
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR L + RA+AQ T I LA+RLG+W LK ELEDL F L+P+ +R
Sbjct: 99 LARQLARMRAADKLDDEQRRALAQLTRDIHAPLANRLGIWQLKWELEDLAFRHLEPETYR 158
Query: 274 KM 275
++
Sbjct: 159 RI 160
>gi|374264055|ref|ZP_09622600.1| hypothetical protein LDG_9071 [Legionella drancourtii LLAP12]
gi|363535622|gb|EHL29071.1| hypothetical protein LDG_9071 [Legionella drancourtii LLAP12]
Length = 734
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 82/119 (68%), Gaps = 9/119 (7%)
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K ++SI+ KM RK+V + ++YDA A+RV+V + P CY +L IVH LW
Sbjct: 257 RSKHIHSIYKKMTRKNVALDEIYDATAVRVLVTTE------PQ---CYEVLGIVHTLWKQ 307
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 520
I EFDDYI NPK +GYQSLHTAV+GP+G EVQIRT MH+ AE G+AAHW YKE G
Sbjct: 308 IPAEFDDYIFNPKANGYQSLHTAVEGPEGRVFEVQIRTFHMHDLAEMGVAAHWKYKEGG 366
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 99/202 (49%), Gaps = 21/202 (10%)
Query: 95 GYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVA 154
GY + N E ++ A ++ A +TG C+ G +A L+ +T+ A
Sbjct: 29 GY-LDNLELIRSACTLSQLAEQDHATETGQS----CLQQGLAMADLLADLDVDQ-ETLAA 82
Query: 155 GILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYI------NQLLRRHRRI-NVNQG 207
I+ + V A SL +EE+ G +AKLV G+ R+S + N+ + ++I N+ +
Sbjct: 83 AIIFESVHYADLSLDDVEEQLGPNIAKLVKGIERMSAMHNVQSFNKYPQNKQQIDNIRKM 142
Query: 208 TLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAEL 259
L + LA+RL +R LP A +A E + I+ LA+RLG+ A+K E+
Sbjct: 143 LLAMVDDVRVVLIKLAERLCILRVTAHLPEALRIQIATEAMEIYAPLANRLGIGAIKWEM 202
Query: 260 EDLCFAVLQPQIFRKMRADLAS 281
EDL F L P+ ++ + L +
Sbjct: 203 EDLAFRHLHPEDYKAIAKGLKA 224
>gi|153872438|ref|ZP_02001331.1| RelA/SpoT family protein [Beggiatoa sp. PS]
gi|152071096|gb|EDN68669.1| RelA/SpoT family protein [Beggiatoa sp. PS]
Length = 740
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/139 (48%), Positives = 88/139 (63%), Gaps = 14/139 (10%)
Query: 380 ALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGT 439
+L K LL S ++ +S R K LYSI+ KM+RK++G +++D RA+RV+V
Sbjct: 240 SLSKALLKS-----NIKADISGRPKHLYSIWHKMQRKNLGFEQIFDVRAVRVLVN----- 289
Query: 440 LHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRT 499
I CY +L I+H LW P+ EFDDYI N K + YQSLHTAV GP+ EVQIRT
Sbjct: 290 ----TINECYMVLGIIHNLWQPLRNEFDDYIANSKSNNYQSLHTAVIGPEQKIFEVQIRT 345
Query: 500 QKMHEYAEHGLAAHWLYKE 518
MH +AE G+A+HW YKE
Sbjct: 346 HSMHHHAEFGVASHWRYKE 364
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 116/235 (49%), Gaps = 32/235 (13%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT--VVA 154
P + + KA +A++ HH + + G PYL H I ILA L +DT ++A
Sbjct: 31 PYQEQQAMIKACQWAQQVHHTK-KFLGVPYLVHVITVADILAQL-------GMDTEVLIA 82
Query: 155 GILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI--------NVNQ 206
ILHDV + I++ FG +V +L+ GV+++ I +L +I ++ +
Sbjct: 83 AILHDVSFEQQIRPDDIKKRFGIKVKRLIDGVAKMKVIEELNDNSDKIINTKNQIESLRK 142
Query: 207 GTLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 258
L E LA+RL MR + P K + +A+ETL ++ LA+RLG+W +K E
Sbjct: 143 MLLAMAEDVRVVLIKLAERLDKMRLLRHQPVEKQQRMARETLDLFAPLANRLGIWQIKWE 202
Query: 259 LEDLCFAVLQPQIFRKMRADLASMWSPR--NRVGYSRRITTIVSSPPLDERTASD 311
LEDL L+P I++KM A + R +R Y R++ +S L +D
Sbjct: 203 LEDLSLRYLEPDIYQKM----AQLLDERRVDRENYIRQVMASLSKALLKSNIKAD 253
>gi|225023659|ref|ZP_03712851.1| hypothetical protein EIKCOROL_00522 [Eikenella corrodens ATCC
23834]
gi|224943541|gb|EEG24750.1| hypothetical protein EIKCOROL_00522 [Eikenella corrodens ATCC
23834]
Length = 737
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 84/123 (68%), Gaps = 9/123 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + +YD RA+RV+V ++ CY++L IVH L
Sbjct: 257 VAGRPKHIYSIYRKMVKKKLDFEGLYDIRAVRVLVN---------SVPECYTVLGIVHSL 307
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT++MH++ E G+AAHW YKE
Sbjct: 308 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGIEVQIRTKEMHQFNEFGVAAHWRYKE 367
Query: 519 TGN 521
G
Sbjct: 368 GGK 370
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 28/174 (16%)
Query: 123 GDPYLTHCIHTGRILAML--IPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVA 180
G+P L H + +++A L +P + V A IL + + + E+ G V
Sbjct: 55 GEPLLPHTVGAAQMVAQLDLLP-------EAVAATILSGMSKQGGDWQLQVAEQCGQTVC 107
Query: 181 KLVAGVSRLSYINQLLRRHRRINVNQGTLGHE------------------ELADRLHNMR 222
LV G+ ++ + R + E +LA R M+
Sbjct: 108 SLVQGIDQVQKLTHFARVDGLATPEERAAQAETMRKMLLAMVSDIRVVLIKLALRTRTMQ 167
Query: 223 TIYALPPA-KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
+ P + + R++A+ETL I+ LA+RLG+W LK +LEDL F P+ +R++
Sbjct: 168 YLGGCPDSPEKRSIAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQNPEEYRRI 221
>gi|313679281|ref|YP_004057020.1| (p)ppGpp synthetase I SpoT/RelA [Oceanithermus profundus DSM 14977]
gi|313151996|gb|ADR35847.1| (p)ppGpp synthetase I, SpoT/RelA [Oceanithermus profundus DSM
14977]
Length = 734
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 105/172 (61%), Gaps = 15/172 (8%)
Query: 351 LAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIF 410
LA S+A ++ VV +A AL E ALE + ++ S + G V S R K L+SI+
Sbjct: 212 LAHHSQAHRE--VVDNAKGAL------EHALENDYVLGLS-VDGFSV--SGRTKHLFSIW 260
Query: 411 SKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI----QCCYSLLDIVHRLWIPIDGEF 466
KM+R++ + ++YD ALRV++ K A Q CY +L +VH LW PI G
Sbjct: 261 KKMQREEKTLEQIYDLLALRVILDPKPVASPEEAASREKQVCYHVLGLVHALWPPIPGRV 320
Query: 467 DDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
DYI PKP+GYQSLHT V P G LEVQIRT++MH AE+G+AAHWLYKE
Sbjct: 321 KDYIAQPKPNGYQSLHTTVITPGGLPLEVQIRTREMHRVAEYGVAAHWLYKE 372
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 114/190 (60%), Gaps = 17/190 (8%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
+V++A+ FA RAH GQFR++G+PY+TH + ILA L + D+++AG+LHD V+
Sbjct: 29 RVREALDFAYRAHEGQFRRSGEPYITHPVAVTEILAEL-----QMDPDSLIAGLLHDTVE 83
Query: 163 DA-CESLGSIEEEFGDEVAKLVAG---VSRLSYINQLLRRHRRINVNQGTLGHE------ 212
D S +I + FG++VA++V G VS+LS + + + N+ Q +
Sbjct: 84 DVESVSFETIRQRFGEDVARIVEGETKVSKLSKMATSVEDQQAENLRQMFIAMTRDLRII 143
Query: 213 --ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
+LADR HNMRT+ +PP K R +++ETL I+ +A RLG+ +K ELEDL F L P+
Sbjct: 144 IVKLADRTHNMRTLEFMPPEKQRRISKETLEIFAPMAHRLGIGQIKLELEDLAFRYLHPE 203
Query: 271 IFRKMRADLA 280
+ + LA
Sbjct: 204 EYAALVERLA 213
>gi|325914168|ref|ZP_08176521.1| (p)ppGpp synthetase, RelA/SpoT family [Xanthomonas vesicatoria ATCC
35937]
gi|325539671|gb|EGD11314.1| (p)ppGpp synthetase, RelA/SpoT family [Xanthomonas vesicatoria ATCC
35937]
Length = 727
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 375 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 432
VA E +E K L S G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 220 VARERYIEAVKRALSSALAGQGLRAEVSGRPKHIYSIWRKMQKKRLSFDQLYDVRAIRVM 279
Query: 433 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 492
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 280 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 330
Query: 493 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 331 IEIQIRTHEMHAQAELGVAAHWKYKEGGK 359
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 38/62 (61%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR L + RA+AQ T I LA+RLG+W +K ELEDL F L+P +R
Sbjct: 150 LARQLARMRVADRLSEEQRRALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPDTYR 209
Query: 274 KM 275
++
Sbjct: 210 RI 211
>gi|257092684|ref|YP_003166325.1| (p)ppGpp synthetase I SpoT/RelA [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257045208|gb|ACV34396.1| (p)ppGpp synthetase I, SpoT/RelA [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 753
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/120 (54%), Positives = 85/120 (70%), Gaps = 9/120 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+ R K +YSI++KMR+K V +VYD RALRV+V + ++ CY+ L IVH +
Sbjct: 272 IYGRPKHIYSIWNKMRKKGVEFSEVYDVRALRVIVEE---------VRDCYTALGIVHHI 322
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI EFDDYI +PK + Y+SLHTAV PDG A+EVQIRT++MH +AE G+AAHW YKE
Sbjct: 323 WSPIAKEFDDYISHPKGNDYRSLHTAVHCPDGRAIEVQIRTREMHRHAELGVAAHWRYKE 382
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 99/208 (47%), Gaps = 30/208 (14%)
Query: 93 VTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
V G P E++++A+ FA+ + +G+ H + I+A L K D+
Sbjct: 34 VEGLPAVEAERLRRAVDFARGIYGDGQLGSGEAVWGHALGMALIVAGL-----KLDADSR 88
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE 212
+A +L V L IE +FG VA LV G+SRL+ + + R +++ G +
Sbjct: 89 LAALLFAVPAILEFGLTRIESDFGRSVAHLVDGISRLNRLRPISRGFVAHSIDSGEKNPQ 148
Query: 213 ELADRLHNMRTI------------------------YALPPAKARA-VAQETLLIWCSLA 247
EL ++ +R + YA P + R VA+ETL ++ LA
Sbjct: 149 ELRSQIEVLRKMLLAMVEDIRVVLLRLASRTQTLRHYAAEPDELRVPVARETLELYSPLA 208
Query: 248 SRLGLWALKAELEDLCFAVLQPQIFRKM 275
+RLG+W LK ELEDL F L P+I++++
Sbjct: 209 NRLGVWELKWELEDLSFRYLHPEIYKEI 236
>gi|392420864|ref|YP_006457468.1| GTP pyrophosphokinase [Pseudomonas stutzeri CCUG 29243]
gi|452750395|ref|ZP_21950145.1| GTP pyrophosphokinase [Pseudomonas stutzeri NF13]
gi|390983052|gb|AFM33045.1| GTP pyrophosphokinase [Pseudomonas stutzeri CCUG 29243]
gi|452005768|gb|EMD98050.1| GTP pyrophosphokinase [Pseudomonas stutzeri NF13]
Length = 747
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 84/126 (66%), Gaps = 9/126 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K +YSI+ KM++K + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIQPDIDGRAKHIYSIWRKMQKKGLQFSQIYDVRAVRVLV---------PEVRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKET 519
W YK T
Sbjct: 366 WRYKGT 371
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 72/143 (50%), Gaps = 17/143 (11%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------------- 193
D++VA +++ V + L + + FG VAKLV GV R++ I+
Sbjct: 83 DSLVAAVIYRGVREGKIQLADVNQRFGPVVAKLVEGVLRMAAISASLNPRESLVLGSQAQ 142
Query: 194 -QLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+ LR+ V+ + +LA+R +R + K + VA+E I+ LA RLG+
Sbjct: 143 VENLRKMLVAMVDDVRVALIKLAERTCAIRAVKLADDEKRQRVAREVFDIYAPLAHRLGI 202
Query: 253 WALKAELEDLCFAVLQPQIFRKM 275
+K ELEDL F L+P+ ++++
Sbjct: 203 GHIKWELEDLSFRYLEPEQYKQI 225
>gi|431926786|ref|YP_007239820.1| RelA/SpoT family (p)ppGpp synthetase [Pseudomonas stutzeri RCH2]
gi|431825073|gb|AGA86190.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas stutzeri RCH2]
Length = 747
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 84/126 (66%), Gaps = 9/126 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K +YSI+ KM++K + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIQPDIDGRAKHIYSIWRKMQKKGLQFSQIYDVRAVRVLV---------PEVRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKET 519
W YK T
Sbjct: 366 WRYKGT 371
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 72/143 (50%), Gaps = 17/143 (11%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------------- 193
D++VA +++ V + L + + FG VAKL+ GV R++ I+
Sbjct: 83 DSLVAAVIYRGVREGKIQLADVNQRFGSVVAKLIEGVLRMAAISASLNPRESLVLGSQAQ 142
Query: 194 -QLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+ LR+ V+ + +LA+R +R + K + VA+E I+ LA RLG+
Sbjct: 143 VENLRKMLVAMVDDVRVALIKLAERTCAIRAVKLADDEKRQRVAREVFDIYAPLAHRLGI 202
Query: 253 WALKAELEDLCFAVLQPQIFRKM 275
+K ELEDL F L+P+ ++++
Sbjct: 203 GHIKWELEDLSFRYLEPEQYKQI 225
>gi|146283008|ref|YP_001173161.1| GTP pyrophosphokinase [Pseudomonas stutzeri A1501]
gi|386021388|ref|YP_005939412.1| GTP pyrophosphokinase [Pseudomonas stutzeri DSM 4166]
gi|145571213|gb|ABP80319.1| GTP pyrophosphokinase [Pseudomonas stutzeri A1501]
gi|327481360|gb|AEA84670.1| GTP pyrophosphokinase [Pseudomonas stutzeri DSM 4166]
Length = 747
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 84/126 (66%), Gaps = 9/126 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K +YSI+ KM++K + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIQPEIDGRAKHIYSIWRKMQKKGLQFSQIYDVRAVRVLV---------PEVRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKET 519
W YK T
Sbjct: 366 WRYKGT 371
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 23/178 (12%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------------- 193
D++VA +++ V + L + + FG VAKL+ GV R++ I+
Sbjct: 83 DSLVAAVIYRGVREGKIQLADVHQRFGPVVAKLIEGVLRMAAISASLNPRESLVLGSQAQ 142
Query: 194 -QLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+ LR+ V+ + +LA+R +R + K + VA+E I+ LA RLG+
Sbjct: 143 VENLRKMLVAMVDDVRVALIKLAERTCAIRAVKLADDEKRQRVAREVFDIYAPLAHRLGI 202
Query: 253 WALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTAS 310
+K ELEDL F L+P+ +++ +A + R R+ + IT +V DE TA+
Sbjct: 203 GHIKWELEDLSFRYLEPEQYKQ----IAQLLHER-RLDREQYITNVVQQLK-DELTAA 254
>gi|418294259|ref|ZP_12906155.1| GTP pyrophosphokinase [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
gi|379065638|gb|EHY78381.1| GTP pyrophosphokinase [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
Length = 747
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 84/126 (66%), Gaps = 9/126 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K +YSI+ KM++K + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIQPDIDGRAKHIYSIWRKMQKKGLQFSQIYDVRAVRVLV---------PEVRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKET 519
W YK T
Sbjct: 366 WRYKGT 371
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 72/143 (50%), Gaps = 17/143 (11%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------------- 193
D++VA +++ V + L + + FG VAKL+ GV R++ I+
Sbjct: 83 DSLVAAVIYRGVREGKIQLPDVHQRFGSVVAKLIEGVLRMAAISASLNPRESLVLGSQAQ 142
Query: 194 -QLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+ LR+ V+ + +LA+R +R + K + VA+E I+ LA RLG+
Sbjct: 143 VENLRKMLVAMVDDVRVALIKLAERTCAIRAVKLTDDEKRQRVAREVFDIYAPLAHRLGI 202
Query: 253 WALKAELEDLCFAVLQPQIFRKM 275
+K ELEDL F L+P+ ++++
Sbjct: 203 GHIKWELEDLSFRYLEPEQYKQI 225
>gi|222151518|ref|YP_002560674.1| GTP pyrophosphokinase [Macrococcus caseolyticus JCSC5402]
gi|222120643|dbj|BAH17978.1| GTP pyrophosphokinase [Macrococcus caseolyticus JCSC5402]
Length = 730
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 99/160 (61%), Gaps = 15/160 (9%)
Query: 392 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 451
I G+ ++ R K +YSI+ KM ++ +++D A+R++V +I+ CY++
Sbjct: 231 ITGINGEITGRPKHIYSIYRKMVKQKKQFDQIFDLLAIRIIVD---------SIKDCYAV 281
Query: 452 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 511
L +VH LW P+ G F DYI PKP+ YQSLHT V GP+G LE+QIRT +MHE AEHG+A
Sbjct: 282 LGLVHTLWKPMPGRFKDYIAMPKPNMYQSLHTTVVGPNGDPLEIQIRTHEMHEIAEHGVA 341
Query: 512 AHWLYKE-----TGNKLQSISSMD-ESDIEASSSLSKDTD 545
AHW YKE ++ +S+S M +IE + S S D +
Sbjct: 342 AHWAYKEGKSLVNPDEARSLSKMSWMQEIEETDSTSPDAE 381
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/180 (38%), Positives = 101/180 (56%), Gaps = 15/180 (8%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V K+ A++AH GQFRK G PY+ H I ILA + K T+VAG LHDVV+D
Sbjct: 28 VVKSYELAEKAHEGQFRKNGLPYIMHPIQVAGILAEM-----KLDGPTIVAGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRRINV---NQGTLGHEEL 214
+ +++ F +EVA +V GV++L + + HR++ + + +L
Sbjct: 83 TPYTYEDLKQMFNEEVAYIVDGVTKLEKVKYRSKAEEQAENHRKLFIAIAKDVRVILVKL 142
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP-QIFR 273
ADRLHNMRT+ A+P K +A+ETL I+ LA RLG+ +K ELED+ + Q FR
Sbjct: 143 ADRLHNMRTLKAMPHEKQVRIAKETLEIYAPLAHRLGINTIKWELEDISLRYIDSIQYFR 202
>gi|114776357|ref|ZP_01451402.1| GTP pyrophosphokinase [Mariprofundus ferrooxydans PV-1]
gi|114553187|gb|EAU55585.1| GTP pyrophosphokinase [Mariprofundus ferrooxydans PV-1]
Length = 711
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ T+ R+K LYSI KM+RK V ++D A RV+V D Q CY L
Sbjct: 228 GLAATVHGRMKHLYSIHEKMQRKHVNFDDIFDLIAFRVIVDDA---------QTCYQALG 278
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH L+ P+ G F DYI PKP+GYQSLHTAV GP+ +E+QIRT MH YAE G+A+H
Sbjct: 279 IVHSLYRPVPGRFKDYIALPKPNGYQSLHTAVIGPENFRIEIQIRTHLMHSYAEDGVASH 338
Query: 514 WLYKE 518
W YKE
Sbjct: 339 WAYKE 343
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 112/206 (54%), Gaps = 18/206 (8%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P N E + A FA AH GQ R +GDPY+TH + ILA L +V+ +
Sbjct: 16 PKANLELINCAYVFAAHAHAGQVRSSGDPYITHPLAVAGILASLGMDEA-----SVITAL 70
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLGHEE-- 213
LHD V+D L IEE FG +VA+LV GV+++ I+ H++ N + L +
Sbjct: 71 LHDTVEDTGVKLSEIEENFGADVARLVDGVTKIGQIHFNSSEHKQAENFRKMILATAKDL 130
Query: 214 ------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL 267
LADRLHNMRT+ +P K R + +ETL I+ LA RLG+ +K E+EDL F+ L
Sbjct: 131 RVLIVKLADRLHNMRTLGFVPEHKRRRIGEETLQIYAPLAHRLGMHWIKQEMEDLVFSHL 190
Query: 268 QPQIFR----KMRADLASMWSPRNRV 289
+P+ ++ +M+ L + R R+
Sbjct: 191 EPEAYKALMVEMQGRLEMLNQTRERL 216
>gi|171463693|ref|YP_001797806.1| GTP diphosphokinase [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|171193231|gb|ACB44192.1| GTP diphosphokinase [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 678
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+E + R K +YSI+ KM+ + + +YD RA RV+V D I+ CY+ L I
Sbjct: 211 IEGEVLGRPKHIYSIWKKMQGRSLDFANLYDVRAFRVLVDD---------IKSCYAALGI 261
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH +W P+ EFDDYI PKP+GYQSLHT V DG+A E+Q+RT +MH+ AE+GLAAHW
Sbjct: 262 VHNVWQPVSREFDDYIARPKPNGYQSLHTVVMDDDGTAFEIQVRTHEMHQQAEYGLAAHW 321
Query: 515 LYKE 518
YKE
Sbjct: 322 RYKE 325
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 37/62 (59%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA RL +R I + A AQE L I SLA+RLG+W +K E+EDL F L P +R
Sbjct: 119 LASRLQTLRWITQEKIKMSAAWAQEILNIDASLANRLGIWQMKWEMEDLAFRALSPDTYR 178
Query: 274 KM 275
++
Sbjct: 179 EI 180
>gi|393758439|ref|ZP_10347260.1| GTP pyrophosphokinase [Alcaligenes faecalis subsp. faecalis NCIB
8687]
gi|393164858|gb|EJC64910.1| GTP pyrophosphokinase [Alcaligenes faecalis subsp. faecalis NCIB
8687]
Length = 764
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 83/124 (66%), Gaps = 9/124 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+S R K ++SI++KMR K + +++D RALRV+V D+ + CY L +VH L
Sbjct: 252 VSGRPKHIFSIWNKMRNKHLDFEQLFDLRALRVIVEDE---------RSCYHTLAVVHSL 302
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W P+ EFDDYI PKP+GY+SLHT + G E+QIRT+ MH++AE+G+AAHW YKE
Sbjct: 303 WTPVPEEFDDYISRPKPNGYRSLHTVIADAQGRCFEIQIRTRDMHQFAEYGMAAHWRYKE 362
Query: 519 TGNK 522
G +
Sbjct: 363 AGAQ 366
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 24/176 (13%)
Query: 122 TGDPYLTHCIHTGRILAMLIPSSGKRA--VDTVVAGILHDVVDDACESLGSIEEEFGDEV 179
TG+P +HC ILA L + RA + V +V D +++ FG EV
Sbjct: 52 TGEPLDSHCAQVALILAGLGVDAQTRASALLAVTPAPGPEVKQD------PVQKAFGTEV 105
Query: 180 AKLVAGVSRLSYINQLL--RRHRRINVNQGTLGHE--------------ELADRLHNMRT 223
LV G L + + + + +Q + + LA RL ++R
Sbjct: 106 MTLVRGSRALYRLGSITGQAKEQTGGGDQKEMKRKMLLAMAADLRIVLMRLASRLQSLRW 165
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 279
A+ETL ++ LA+RLG+W +K E+EDL F L P++++ + L
Sbjct: 166 YRQSKTVCPVGFARETLELYTPLANRLGIWQIKWEMEDLAFRFLNPEVYKDIAGRL 221
>gi|329118474|ref|ZP_08247179.1| GTP diphosphokinase [Neisseria bacilliformis ATCC BAA-1200]
gi|327465415|gb|EGF11695.1| GTP diphosphokinase [Neisseria bacilliformis ATCC BAA-1200]
Length = 736
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/123 (50%), Positives = 82/123 (66%), Gaps = 9/123 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
L+ R K +YSI+ KM +K + +YD RA+R++V ++ CY+ L IVH L
Sbjct: 257 LAGRPKHIYSIYKKMVKKKLDFDGLYDIRAVRILVD---------SVAECYTTLGIVHSL 307
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GYQSLHT + GP+ +EVQIRT +MH++ E G+AAHW YKE
Sbjct: 308 WQPIPGEFDDYIANPKGNGYQSLHTVIVGPEDKGVEVQIRTFEMHQFNEFGVAAHWRYKE 367
Query: 519 TGN 521
G
Sbjct: 368 GGK 370
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 28/174 (16%)
Query: 123 GDPYLTHCIHTGRILAM--LIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVA 180
G+P L H + T R +A L+P + A +L DV + E+ G VA
Sbjct: 55 GEPLLAHLLETARTVAQIDLLP-------EAAAAAVLADVSSYREGWYEEVAEKCGKTVA 107
Query: 181 KLVAGVSRLSYINQLLRRHRRINVNQGTLGHE------------------ELADRLHNMR 222
LV G+ + + R + E +LA R +
Sbjct: 108 DLVRGIDEVQKLTHFARMDSLATPEERAAQAETMRKMLLAMVSDIRVVIIKLAMRTQTLH 167
Query: 223 TIYALPPA-KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
+ +P + + RA+A+ETL I+ LA+RLG+W LK +LEDL F P+ +R++
Sbjct: 168 FLGGVPDSPEKRAIAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQNPEEYRRI 221
>gi|224824791|ref|ZP_03697898.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudogulbenkiania ferrooxidans
2002]
gi|224603284|gb|EEG09460.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudogulbenkiania ferrooxidans
2002]
Length = 733
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 89/127 (70%), Gaps = 9/127 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ ++ R K +YSI+ KMR+K++ ++YD RA+RV+V +++ CY++L
Sbjct: 252 GVNGEVAGRPKHIYSIWKKMRKKNLDFSELYDIRAVRVLV---------ESVKDCYTVLG 302
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
++H +W P+ GEFDDYI +PK + Y+SLHTAV GP+ +EVQIRT MHE+AE G+AAH
Sbjct: 303 LIHSMWQPVPGEFDDYISHPKANDYRSLHTAVIGPEDRVIEVQIRTFDMHEHAEFGVAAH 362
Query: 514 WLYKETG 520
W YKE G
Sbjct: 363 WRYKEGG 369
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 24/189 (12%)
Query: 106 KAIAFAKRAHHGQ-FRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDA 164
+A A+ + G+ +TG+ +H + I+A L D VVA +L V D
Sbjct: 39 RAFNCARELYAGKRLTQTGEDVFSHAVSAAAIVADL-----DLLTDAVVATLLFAVPDFR 93
Query: 165 CESLGSIEEEFGDEVAKLVAGVSRLSYINQLLR---------RHRRINVNQGTLGHE--- 212
+ + EF V LV GV+R+ + ++ R R R+ + L
Sbjct: 94 EDWHEWMTNEFNPTVVVLVDGVNRVRRLTEIARIDKLDTPEERARQAETMRKMLLAMVAD 153
Query: 213 ------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAV 266
+LA R M + P RA+AQET+ ++ LA+RLG+W +K ELEDL F
Sbjct: 154 IRVVLIKLAWRTQTMHYLTECPEPVRRAIAQETMDVFAPLANRLGVWQIKWELEDLAFRH 213
Query: 267 LQPQIFRKM 275
++P+ ++K+
Sbjct: 214 IEPENYKKI 222
Score = 39.7 bits (91), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 13/106 (12%)
Query: 712 EASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMR 771
+A+ K+ LR +L W E++ + L + + + + + V PNG ++
Sbjct: 372 DAAYEEKISWLRQLLDWREEVSDRSGLTDAF---------KTELFSDTIYVLTPNGRVLA 422
Query: 772 LRSGSTAADAAMKV----GLEGKLVLVNGQLVLPNTELKDGDIVEV 813
L SG+TA D A + G + V GQ+V +T L++G VE+
Sbjct: 423 LPSGATAIDFAYAIHTDLGHRCRGAKVEGQIVPLSTPLQNGQRVEI 468
>gi|345877758|ref|ZP_08829496.1| dihydroneopterin aldolase [endosymbiont of Riftia pachyptila (vent
Ph05)]
gi|344225209|gb|EGV51574.1| dihydroneopterin aldolase [endosymbiont of Riftia pachyptila (vent
Ph05)]
Length = 734
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 85/126 (67%), Gaps = 9/126 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K +YSI+ KM+RK V I +++D RA+RV+V D + CY++L
Sbjct: 249 GIQAGISGRPKHIYSIWRKMQRKAVDIEQIFDLRAVRVLVED---------VADCYAVLG 299
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I GEFDDYI PK + YQS+HTAV GP+ LEVQIRT MH ++E G+AAH
Sbjct: 300 IVHSLWRHIPGEFDDYIATPKTNMYQSIHTAVIGPEDKTLEVQIRTHDMHHHSELGVAAH 359
Query: 514 WLYKET 519
W YKE
Sbjct: 360 WRYKEN 365
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 20/181 (11%)
Query: 122 TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAK 181
+G+ + H + +LA S + +T+ A IL V+DD ++ FG+ +
Sbjct: 56 SGELRIRHALSVAEVLA-----SMRLDRETLAAAILLGVLDDEASDQEALTARFGEATLR 110
Query: 182 LVAGVSRLSYINQLLRR-------HRRINVNQGTLGHEE--------LADRLHNMRTIYA 226
+V ++R+ + R N+ + LG E +A+RLH MR
Sbjct: 111 MVGDMARIDALTDFSREIPAGDQEEHAENLRRLLLGIAEDVRVVLVVVAERLHLMRIARD 170
Query: 227 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 286
P R +A++T I+ LA+RLG+W +K ELEDL L+P+ ++++ + L S R
Sbjct: 171 FPAEIQRRIAEQTRSIYAPLANRLGIWQIKWELEDLSLRFLEPEAYKRIASQLDGRRSDR 230
Query: 287 N 287
Sbjct: 231 E 231
>gi|54294502|ref|YP_126917.1| GTP pyrophosphokinase [Legionella pneumophila str. Lens]
gi|53754334|emb|CAH15811.1| GTP pyrophosphokinase [Legionella pneumophila str. Lens]
Length = 734
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/117 (52%), Positives = 82/117 (70%), Gaps = 9/117 (7%)
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K ++SI+ KM+RK+V + ++YDA A+R++V + CY +L +VH LW
Sbjct: 257 RSKHIHSIYKKMKRKNVSLDEIYDATAVRILVDTE---------AQCYEVLGMVHTLWKQ 307
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
I EFDDYI+NPK +GYQSLHTAV+GP+G EVQIRT MH+ AE G+AAHW YKE
Sbjct: 308 IPAEFDDYIINPKSNGYQSLHTAVEGPEGRVFEVQIRTFHMHDLAEMGVAAHWKYKE 364
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 97/202 (48%), Gaps = 21/202 (10%)
Query: 95 GYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVA 154
GY + N E V+ A ++ A +TG L + +LA L +T+ A
Sbjct: 29 GY-LDNLELVRAACTLSQLAGQDHATETGQTCLQQGLSMADLLADLEVDQ-----ETLAA 82
Query: 155 GILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN--QLLRRHRRI-----NVNQG 207
I+ + V A S+ +EE+ G +AKLV G+ ++S +N Q L ++ + N+ +
Sbjct: 83 AIIFENVHYADLSIDDVEEQLGHNIAKLVKGIEKMSAMNNFQALNKYPQNKNQIDNIRKM 142
Query: 208 TLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAEL 259
L + LA+ L +RT L + +A E + I+ LA+RLG+ A+K E+
Sbjct: 143 LLAMVDDVRVVLIKLAECLCILRTAGHLSETIRKQLATEAMEIYAPLANRLGIGAIKWEM 202
Query: 260 EDLCFAVLQPQIFRKMRADLAS 281
EDL F L P+ ++ + L +
Sbjct: 203 EDLAFRHLHPEEYKAIAKGLKA 224
>gi|421616773|ref|ZP_16057775.1| GTP pyrophosphokinase [Pseudomonas stutzeri KOS6]
gi|421617261|ref|ZP_16058255.1| GTP pyrophosphokinase [Pseudomonas stutzeri KOS6]
gi|409780759|gb|EKN60376.1| GTP pyrophosphokinase [Pseudomonas stutzeri KOS6]
gi|409781254|gb|EKN60856.1| GTP pyrophosphokinase [Pseudomonas stutzeri KOS6]
Length = 747
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 83/126 (65%), Gaps = 9/126 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ + R K +YSI+ KM++K + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIPADIDGRAKHIYSIWRKMQKKGLQFSQIYDVRAVRVLV---------PEVRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 514 WLYKET 519
W YK T
Sbjct: 366 WRYKGT 371
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 87/178 (48%), Gaps = 23/178 (12%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------------- 193
D+++A +++ V + L + + FG VAKL+ GV R++ I+
Sbjct: 83 DSLIAAVIYRGVREGKIQLADVHQRFGPVVAKLIEGVLRMAAISASLNPRESLVLGSQAQ 142
Query: 194 -QLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+ LR+ V+ + +LA+R +R + K + VA+E I+ LA RLG+
Sbjct: 143 VENLRKMLVAMVDDVRVALIKLAERTCAIRAVKLADDEKRQRVAREVFDIYAPLAHRLGI 202
Query: 253 WALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTAS 310
+K ELEDL F L+P+ +++ +A + R R+ + IT +V DE TA+
Sbjct: 203 GHIKWELEDLSFRYLEPEQYKQ----IAQLLHER-RLDREQYITNVVQQLK-DELTAT 254
>gi|15837917|ref|NP_298605.1| ATP:GTP 3'-pyrophosphotransferase [Xylella fastidiosa 9a5c]
gi|9106309|gb|AAF84125.1|AE003964_9 ATP:GTP 3'-pyrophosphotranferase [Xylella fastidiosa 9a5c]
Length = 718
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 64/128 (50%), Positives = 86/128 (67%), Gaps = 9/128 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM++K + +VYD +A+RV+V D + CY+ L
Sbjct: 234 GVCAEVSGRPKHIYSIWRKMQKKRLHFEQVYDLQAVRVMVED---------MAACYAALG 284
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW P+ GEFDDYI PK + Y+SLHTAV GP+G +EVQIRT +MH +AE G+AAH
Sbjct: 285 VVHALWAPVPGEFDDYIARPKENDYRSLHTAVLGPEGRTVEVQIRTHEMHAHAELGVAAH 344
Query: 514 WLYKETGN 521
W YKE G
Sbjct: 345 WKYKEGGK 352
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR L ++ RA+AQ T I LA+RLG+W LK ELEDL F L+ +I+R
Sbjct: 143 LARQLAKMRAAGVLLESQRRALAQLTRDIHAPLANRLGIWQLKWELEDLAFRYLESEIYR 202
Query: 274 KMRADLASMWSPRNRVGYSRRITTI 298
+ + L +RV R I+ I
Sbjct: 203 SIASALDE-----SRVARERYISVI 222
>gi|262273703|ref|ZP_06051516.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Grimontia hollisae CIP
101886]
gi|262222118|gb|EEY73430.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Grimontia hollisae CIP
101886]
Length = 736
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 107/372 (28%), Positives = 173/372 (46%), Gaps = 90/372 (24%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
DT++A +L +V+D SL ++E +G +AKLVAGV ++ I RH N Q T
Sbjct: 72 DTLLAALLFPMVEDGVLSLELLQERYGSNIAKLVAGVQEMAAI-----RHLNANNEQAT- 125
Query: 210 GHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLG-LWALKAELEDLCFAVLQ 268
A ++ N+R + R V LA R+ L +K E +++ AV +
Sbjct: 126 -----AAQVDNVRRMLLSMVDDFRCVV-------IKLAERITYLREVKNEPDEVRQAVAK 173
Query: 269 PQIFRKMRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKD 327
+ A++++P NR+G + I E + +H + K
Sbjct: 174 ---------ECANIYAPLANRLGIGQLKWEI--------------EDYAFRYQHATTYKQ 210
Query: 328 LLEAVVPFDILSDRRKRTK-FLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELL 386
+ + + I DR + + F+ DL + EA
Sbjct: 211 IAKQLAERRI--DREQYIEAFVSDLQNAMEA----------------------------- 239
Query: 387 ISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQ 446
+ + R K +YSI+ KM++K + +++D RA+R++ +Q
Sbjct: 240 ------SNINAQVYGRPKHIYSIWRKMQKKGLAFDELFDVRAVRII---------ADQLQ 284
Query: 447 CCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYA 506
CY+ L +VH + + EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT++MH+ A
Sbjct: 285 DCYAALGVVHTKYRHLPKEFDDYVANPKPNGYQSIHTVVLGPEGKTVEIQIRTKQMHDDA 344
Query: 507 EHGLAAHWLYKE 518
E G+AAHW YKE
Sbjct: 345 ELGVAAHWKYKE 356
>gi|148358987|ref|YP_001250194.1| GTP pyrophosphokinase [Legionella pneumophila str. Corby]
gi|296107036|ref|YP_003618736.1| GTP pyrophosphokinase [Legionella pneumophila 2300/99 Alcoy]
gi|148280760|gb|ABQ54848.1| GTP pyrophosphokinase ((p)ppGpp synthetase I) stringent stress
response RelA [Legionella pneumophila str. Corby]
gi|295648937|gb|ADG24784.1| GTP pyrophosphokinase [Legionella pneumophila 2300/99 Alcoy]
Length = 734
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/117 (52%), Positives = 82/117 (70%), Gaps = 9/117 (7%)
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K ++SI+ KM+RK+V + ++YDA A+R++V + CY +L +VH LW
Sbjct: 257 RSKHIHSIYKKMKRKNVSLDEIYDATAVRILVDTEAQ---------CYEVLGMVHTLWKQ 307
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
I EFDDYI+NPK +GYQSLHTAV+GP+G EVQIRT MH+ AE G+AAHW YKE
Sbjct: 308 IPAEFDDYIINPKSNGYQSLHTAVEGPEGRVFEVQIRTFHMHDLAEMGVAAHWKYKE 364
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 97/202 (48%), Gaps = 21/202 (10%)
Query: 95 GYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVA 154
GY + N E V+ A ++ A +TG L + +LA L +T+ A
Sbjct: 29 GY-LDNLELVRAACTLSQLAGQDHATETGQTCLQQGLSMADLLADLEVDQ-----ETLAA 82
Query: 155 GILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN--QLLRRHRRI-----NVNQG 207
I+ + V A S+ +EE+ G +AKLV G+ ++S +N Q L ++ + N+ +
Sbjct: 83 AIIFENVHYADLSIDDVEEQLGHNIAKLVKGIEKMSAMNNFQALNKYPQNKNQIDNIRKM 142
Query: 208 TLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAEL 259
L + LA+ L +RT L + +A E + I+ LA+RLG+ A+K E+
Sbjct: 143 LLAMVDDVRVVLIKLAECLCILRTAGHLSETVRKQLATEAMEIYAPLANRLGIGAIKWEM 202
Query: 260 EDLCFAVLQPQIFRKMRADLAS 281
EDL F L P+ ++ + L +
Sbjct: 203 EDLAFRHLHPEEYKAIAKGLKA 224
>gi|52841687|ref|YP_095486.1| GTP pyrophosphokinase [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
gi|397663890|ref|YP_006505428.1| (p)ppGpp synthetase I [Legionella pneumophila subsp. pneumophila]
gi|52628798|gb|AAU27539.1| GTP pyrophosphokinase ((p)ppGpp synthetase I) stringent stress
response RelA [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
gi|395127301|emb|CCD05491.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Legionella pneumophila
subsp. pneumophila]
Length = 734
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/117 (52%), Positives = 82/117 (70%), Gaps = 9/117 (7%)
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K ++SI+ KM+RK+V + ++YDA A+R++V + CY +L +VH LW
Sbjct: 257 RSKHIHSIYKKMKRKNVSLDEIYDATAVRILVDTE---------AQCYEVLGMVHTLWKQ 307
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
I EFDDYI+NPK +GYQSLHTAV+GP+G EVQIRT MH+ AE G+AAHW YKE
Sbjct: 308 IPAEFDDYIINPKSNGYQSLHTAVEGPEGRVFEVQIRTFHMHDLAEMGVAAHWKYKE 364
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 97/202 (48%), Gaps = 21/202 (10%)
Query: 95 GYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVA 154
GY + N E V+ A ++ A +TG L + +LA L +T+ A
Sbjct: 29 GY-LDNLELVRAACTLSQLAGQDHATETGQTCLQQGLSMADLLADLEVDQ-----ETLAA 82
Query: 155 GILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN--QLLRRHRRI-----NVNQG 207
I+ + V A S+ +EE+ G +AKLV G+ ++S +N Q L ++ + N+ +
Sbjct: 83 AIIFENVHYADLSIDDVEEQLGHNIAKLVKGIEKMSAMNNFQALNKYPQNKNQIDNIRKM 142
Query: 208 TLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAEL 259
L + LA+ L +RT L + +A E + I+ LA+RLG+ A+K E+
Sbjct: 143 LLAMVDDVRVVLIKLAECLCILRTAGHLSETVRKQLATEAMEIYAPLANRLGIGAIKWEM 202
Query: 260 EDLCFAVLQPQIFRKMRADLAS 281
EDL F L P+ ++ + L +
Sbjct: 203 EDLAFRHLHPEEYKAIAKGLKA 224
>gi|54297368|ref|YP_123737.1| GTP pyrophosphokinase [Legionella pneumophila str. Paris]
gi|378777322|ref|YP_005185759.1| GTP pyrophosphokinase [Legionella pneumophila subsp. pneumophila
ATCC 43290]
gi|53751153|emb|CAH12564.1| GTP pyrophosphokinase [Legionella pneumophila str. Paris]
gi|364508136|gb|AEW51660.1| GTP pyrophosphokinase ((p)ppGpp synthetase I) stringent stress
response RelA [Legionella pneumophila subsp. pneumophila
ATCC 43290]
Length = 734
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/117 (52%), Positives = 82/117 (70%), Gaps = 9/117 (7%)
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K ++SI+ KM+RK+V + ++YDA A+R++V + CY +L +VH LW
Sbjct: 257 RSKHIHSIYKKMKRKNVSLDEIYDATAVRILVDTE---------AQCYEVLGMVHTLWKQ 307
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
I EFDDYI+NPK +GYQSLHTAV+GP+G EVQIRT MH+ AE G+AAHW YKE
Sbjct: 308 IPAEFDDYIINPKSNGYQSLHTAVEGPEGRVFEVQIRTFHMHDLAEMGVAAHWKYKE 364
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 97/202 (48%), Gaps = 21/202 (10%)
Query: 95 GYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVA 154
GY + N E V+ A ++ A +TG L + +LA L +T+ A
Sbjct: 29 GY-LDNLELVRAACTLSQLAGQDHATETGQTCLQQGLSMADLLADLEVDQ-----ETLAA 82
Query: 155 GILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN--QLLRRHRRI-----NVNQG 207
I+ + V A S+ +EE+ G +AKLV G+ ++S +N Q L ++ + N+ +
Sbjct: 83 AIIFENVHYADLSIDDVEEQLGHNIAKLVKGIEKMSAMNNFQALNKYPQNKNQIDNIRKM 142
Query: 208 TLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAEL 259
L + LA+ L +RT L + +A E + I+ LA+RLG+ A+K E+
Sbjct: 143 LLAMVDDVRVVLIKLAECLCILRTAGHLSETVRKQLATEAMEIYAPLANRLGIGAIKWEM 202
Query: 260 EDLCFAVLQPQIFRKMRADLAS 281
EDL F L P+ ++ + L +
Sbjct: 203 EDLAFRHLHPEEYKAIAKGLKA 224
>gi|397667075|ref|YP_006508612.1| (p)ppGpp synthetase I [Legionella pneumophila subsp. pneumophila]
gi|395130486|emb|CCD08728.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Legionella pneumophila
subsp. pneumophila]
Length = 734
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/117 (52%), Positives = 82/117 (70%), Gaps = 9/117 (7%)
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K ++SI+ KM+RK+V + ++YDA A+R++V + CY +L +VH LW
Sbjct: 257 RSKHIHSIYKKMKRKNVSLDEIYDATAVRILVDTE---------AQCYEVLGMVHTLWKQ 307
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
I EFDDYI+NPK +GYQSLHTAV+GP+G EVQIRT MH+ AE G+AAHW YKE
Sbjct: 308 IPAEFDDYIINPKSNGYQSLHTAVEGPEGRVFEVQIRTFHMHDLAEMGVAAHWKYKE 364
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 97/202 (48%), Gaps = 21/202 (10%)
Query: 95 GYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVA 154
GY + N E V+ A ++ A +TG L + +LA L +T+ A
Sbjct: 29 GY-LDNLELVRAACTLSQLAGQDHATETGQTCLQQGLSMADLLADLEVDQ-----ETLAA 82
Query: 155 GILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN--QLLRRHRRI-----NVNQG 207
I+ + V A S+ +EE+ G +AKLV G+ ++S +N Q L ++ + N+ +
Sbjct: 83 AIIFENVHYADLSIDDVEEQLGHNIAKLVKGIEKMSAMNNFQALNKYPQNKNQIDNIRKM 142
Query: 208 TLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAEL 259
L + LA+ L +RT L + +A E + I+ LA+RLG+ A+K E+
Sbjct: 143 LLAMVDDVRVVLIKLAECLCILRTAGHLSETVRKQLATEAMEIYAPLANRLGIGAIKWEM 202
Query: 260 EDLCFAVLQPQIFRKMRADLAS 281
EDL F L P+ ++ + L +
Sbjct: 203 EDLAFRHLHPEEYKAIAKGLKA 224
>gi|220932056|ref|YP_002508964.1| (p)ppGpp synthetase I SpoT/RelA [Halothermothrix orenii H 168]
gi|219993366|gb|ACL69969.1| (p)ppGpp synthetase I, SpoT/RelA [Halothermothrix orenii H 168]
Length = 716
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ + R K LYSI+ KM+RK+V +++YD A+R++V +++ CY +L
Sbjct: 227 GILAEIYGRPKHLYSIYQKMKRKEVDFNEIYDLTAIRIIVN---------SVKECYEVLG 277
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH +W PI G F DYI PK + YQSLHT V GP G LEVQIRT +MH AE+G+AAH
Sbjct: 278 IVHEIWKPIPGRFKDYIAMPKSNMYQSLHTTVIGPKGDPLEVQIRTPEMHRTAEYGIAAH 337
Query: 514 WLYKE 518
W YKE
Sbjct: 338 WKYKE 342
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 113/196 (57%), Gaps = 14/196 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E V++A FAK AH GQFR +G+P++ H + ILA L + + ++ A +LHDVV
Sbjct: 20 ELVKRAYNFAKDAHEGQFRVSGEPFIEHPLGVACILAEL-----ELDIISISAALLHDVV 74
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYIN-QLLRRHRRINVNQGTLGHEE------- 213
+D + +IEEEFGDE+A LV GV++L+ + + H+ N+ + L E
Sbjct: 75 EDTSVTSKNIEEEFGDEIALLVDGVTKLTRLEFKSKEEHQAENLRKMFLAMSEDIRVVLI 134
Query: 214 -LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 272
LADRLHNMRT+ L K A+ETL I+ LA RLG+ LK ELEDL F + +++
Sbjct: 135 KLADRLHNMRTLRFLAKEKQVEKAKETLEIYAPLAHRLGMSRLKWELEDLSFRFIDSKMY 194
Query: 273 RKMRADLASMWSPRNR 288
++ +A+ R R
Sbjct: 195 YEIAEKVAANRKQRIR 210
>gi|188577401|ref|YP_001914330.1| GTP pyrophosphokinase [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188521853|gb|ACD59798.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase) [Xanthomonas oryzae
pv. oryzae PXO99A]
Length = 728
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 375 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 432
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 221 VARERYLEAVKRTLSAALAQQGLRADVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 280
Query: 433 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 492
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 281 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 331
Query: 493 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 332 IEIQIRTHEMHAQAELGVAAHWKYKEGGK 360
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR L + A+AQ T I LA+RLG+W +K ELEDL F L+P +R
Sbjct: 151 LARQLSRMRVADRLSKEQRHALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPDTYR 210
Query: 274 KM 275
++
Sbjct: 211 RI 212
>gi|384420219|ref|YP_005629579.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) [Xanthomonas oryzae pv. oryzicola BLS256]
gi|353463132|gb|AEQ97411.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 728
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 375 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 432
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 221 VARERYLEAVKRTLSAALAQQGLRADVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 280
Query: 433 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 492
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 281 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 331
Query: 493 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 332 IEIQIRTHEMHAQAELGVAAHWKYKEGGK 360
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 38/62 (61%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR L + RA+AQ T I LA+RLG+W +K ELEDL F L+P +R
Sbjct: 151 LARQLSRMRVADRLNEEQRRALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPDTYR 210
Query: 274 KM 275
++
Sbjct: 211 RI 212
>gi|399114593|emb|CCG17387.1| GTP pyrophosphokinase [Taylorella equigenitalis 14/56]
Length = 753
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 89/135 (65%), Gaps = 9/135 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K ++SI++KM+ K + +YD A+RV+V + CY+ L
Sbjct: 252 GIRAEVSGRAKHIFSIYNKMKNKSLKFEDLYDLLAIRVIVQTERD---------CYTTLS 302
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
VH + P+ +FDDYI PKP+GY+SLHT V+ +G+ EVQIRTQKMHE+AE+G+AAH
Sbjct: 303 FVHSNYHPVMEQFDDYIARPKPNGYRSLHTVVRDSNGAVFEVQIRTQKMHEFAEYGMAAH 362
Query: 514 WLYKETGNKLQSISS 528
W YKE G+K ++S+
Sbjct: 363 WRYKEAGSKGGAVSA 377
Score = 45.8 bits (107), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 18/137 (13%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQLLRR---------------HRRINVNQGT---LGHE 212
I ++FG+E+ LV G L + Q++ + R++ + T +
Sbjct: 100 IMDKFGEEIFDLVEGAQTLKRVGQVVNQASLPTAQQEQYQQELLRKMLLAMATDLRIVLI 159
Query: 213 ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 272
LA RL +R Q+ I+ LA+RLG+W +K ELEDL F PQ +
Sbjct: 160 RLASRLQTLRWFVDSKFECPVEFLQQNRNIYAPLANRLGIWQIKWELEDLSFRFENPQEY 219
Query: 273 RKMRADLASMWSPRNRV 289
R + L + + R ++
Sbjct: 220 RDIANKLEATRAEREQL 236
>gi|345863304|ref|ZP_08815516.1| GTP pyrophosphokinase [endosymbiont of Tevnia jerichonana (vent
Tica)]
gi|345125765|gb|EGW55633.1| GTP pyrophosphokinase [endosymbiont of Tevnia jerichonana (vent
Tica)]
Length = 683
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 85/126 (67%), Gaps = 9/126 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K +YSI+ KM+RK V I +++D RA+RV+V D + CY++L
Sbjct: 198 GIQAGISGRPKHIYSIWRKMQRKAVDIEQIFDLRAVRVLVED---------VADCYAVLG 248
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I GEFDDYI PK + YQS+HTAV GP+ LEVQIRT MH ++E G+AAH
Sbjct: 249 IVHSLWRHIPGEFDDYIATPKTNMYQSIHTAVIGPEDKTLEVQIRTHDMHHHSELGVAAH 308
Query: 514 WLYKET 519
W YKE
Sbjct: 309 WRYKEN 314
Score = 69.3 bits (168), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 20/181 (11%)
Query: 122 TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAK 181
+G+ + H + +LA S + +T+ A IL V+DD ++ FG+ +
Sbjct: 5 SGELRIRHALSVAEVLA-----SMRLDRETLAAAILLGVLDDEASDQEALTARFGEATLR 59
Query: 182 LVAGVSRLSYINQLLRR-------HRRINVNQGTLGHEE--------LADRLHNMRTIYA 226
+V ++R+ + R N+ + LG E +A+RLH MR
Sbjct: 60 MVGDMARIDALTDFSREIPAGDQEEHAENLRRLLLGIAEDVRVVLVVVAERLHLMRIARD 119
Query: 227 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 286
P R +A++T I+ LA+RLG+W +K ELEDL L+P+ ++++ + L S R
Sbjct: 120 FPAEIQRRIAEQTRSIYAPLANRLGIWQIKWELEDLSLRFLEPEAYKRIASQLDGRRSDR 179
Query: 287 N 287
Sbjct: 180 E 180
>gi|319779240|ref|YP_004130153.1| GTP pyrophosphokinase [Taylorella equigenitalis MCE9]
gi|397661480|ref|YP_006502180.1| GTP pyrophosphokinase [Taylorella equigenitalis ATCC 35865]
gi|317109264|gb|ADU92010.1| GTP pyrophosphokinase [Taylorella equigenitalis MCE9]
gi|394349659|gb|AFN35573.1| GTP pyrophosphokinase [Taylorella equigenitalis ATCC 35865]
Length = 753
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 89/135 (65%), Gaps = 9/135 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K ++SI++KM+ K + +YD A+RV+V + CY+ L
Sbjct: 252 GIRAEVSGRAKHIFSIYNKMKNKSLKFEDLYDLLAIRVIVQTERD---------CYTTLS 302
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
VH + P+ +FDDYI PKP+GY+SLHT V+ +G+ EVQIRTQKMHE+AE+G+AAH
Sbjct: 303 FVHSNYHPVMEQFDDYIARPKPNGYRSLHTVVRDSNGAVFEVQIRTQKMHEFAEYGMAAH 362
Query: 514 WLYKETGNKLQSISS 528
W YKE G+K ++S+
Sbjct: 363 WRYKEAGSKGGAVSA 377
Score = 46.2 bits (108), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 18/137 (13%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQLLRR---------------HRRINVNQGT---LGHE 212
I ++FG+E+ LV G L + Q++ + R++ + T +
Sbjct: 100 IMDKFGEEIFDLVEGAQTLKRVGQVVNQASLPTAQQEQYQQELLRKMLLAMATDLRIVLI 159
Query: 213 ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 272
LA RL +R Q+ I+ LA+RLG+W +K ELEDL F PQ +
Sbjct: 160 RLASRLQTLRWFVDSKLECPVEFLQQNRNIYAPLANRLGIWQIKWELEDLSFRFENPQEY 219
Query: 273 RKMRADLASMWSPRNRV 289
R + L + + R ++
Sbjct: 220 RDIANKLEATRAEREQL 236
>gi|384428927|ref|YP_005638287.1| GTP pyrophosphokinase (ATP:GTP 3-pyrophosphotransferase)(ppGpp
synthetase I) [Xanthomonas campestris pv. raphani 756C]
gi|341938030|gb|AEL08169.1| GTP pyrophosphokinase (ATP:GTP 3-pyrophosphotransferase)(ppGpp
synthetase I) [Xanthomonas campestris pv. raphani 756C]
Length = 719
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 83/128 (64%), Gaps = 9/128 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM++K + ++YD RA+RV+V D + CY+ L
Sbjct: 233 GLRADVSGRPKHIYSIWRKMQKKRLSFDQLYDVRAVRVMVDD---------VAACYAALG 283
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
VH LW P+ EFDDYI PK + Y+SLHTAV GP+G +E+QIRT +MH AE G+AAH
Sbjct: 284 AVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRTIEIQIRTHEMHAQAELGVAAH 343
Query: 514 WLYKETGN 521
W YKE G
Sbjct: 344 WKYKEGGK 351
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR + RA+AQ T I LA+RLG+W +K ELEDL F L+P +R
Sbjct: 142 LARQLARMRVADRQSEEERRALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPDTYR 201
Query: 274 KMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAV 332
++ D+ R R Y + +S+ + +D + +H+ S+ + + +
Sbjct: 202 RIARDVDETRVARER--YIEAVKRTLSAALAQQGLRAD---VSGRPKHIYSIWRKMQKKR 256
Query: 333 VPFDILSDRRKRTKFLHDLA 352
+ FD L D R + D+A
Sbjct: 257 LSFDQLYDVRAVRVMVDDVA 276
>gi|66767501|ref|YP_242263.1| ATP:GTP 3'-pyrophosphotransferase [Xanthomonas campestris pv.
campestris str. 8004]
gi|66572833|gb|AAY48243.1| ATP:GTP 3'-pyrophosphotranferase [Xanthomonas campestris pv.
campestris str. 8004]
Length = 723
Score = 133 bits (334), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 83/128 (64%), Gaps = 9/128 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM++K + ++YD RA+RV+V D + CY+ L
Sbjct: 237 GLRADVSGRPKHIYSIWRKMQKKRLSFDQLYDVRAVRVMVDD---------VAACYAALG 287
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
VH LW P+ EFDDYI PK + Y+SLHTAV GP+G +E+QIRT +MH AE G+AAH
Sbjct: 288 AVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRTIEIQIRTHEMHAQAELGVAAH 347
Query: 514 WLYKETGN 521
W YKE G
Sbjct: 348 WKYKEGGK 355
Score = 48.1 bits (113), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L +R + RA+AQ T I LA+RLG+W +K ELEDL F L+P +R
Sbjct: 146 LARQLARIRVADRQSEEERRALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPDTYR 205
Query: 274 KMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAV 332
++ D+ R R Y + +S+ + +D + +H+ S+ + + +
Sbjct: 206 RIARDVDETRVARER--YIEAVKRTLSAALAQQGLRAD---VSGRPKHIYSIWRKMQKKR 260
Query: 333 VPFDILSDRRKRTKFLHDLA 352
+ FD L D R + D+A
Sbjct: 261 LSFDQLYDVRAVRVMVDDVA 280
>gi|21232367|ref|NP_638284.1| ATP:GTP 3'-pyrophosphotransferase [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|21114142|gb|AAM42208.1| ATP:GTP 3'-pyrophosphotranferase [Xanthomonas campestris pv.
campestris str. ATCC 33913]
Length = 723
Score = 133 bits (334), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 83/128 (64%), Gaps = 9/128 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM++K + ++YD RA+RV+V D + CY+ L
Sbjct: 237 GLRADVSGRPKHIYSIWRKMQKKRLSFDQLYDVRAVRVMVDD---------VAACYAALG 287
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
VH LW P+ EFDDYI PK + Y+SLHTAV GP+G +E+QIRT +MH AE G+AAH
Sbjct: 288 AVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRTIEIQIRTHEMHAQAELGVAAH 347
Query: 514 WLYKETGN 521
W YKE G
Sbjct: 348 WKYKEGGK 355
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR + RA+AQ T I LA+RLG+W +K ELEDL F L+P +R
Sbjct: 146 LARQLARMRVADRQSEEERRALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPDTYR 205
Query: 274 KMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAV 332
++ D+ R R Y + +S+ + +D + +H+ S+ + + +
Sbjct: 206 RIARDVDETRVARER--YIEAVKRTLSAALAQQGLRAD---VSGRPKHIYSIWRKMQKKR 260
Query: 333 VPFDILSDRRKRTKFLHDLA 352
+ FD L D R + D+A
Sbjct: 261 LSFDQLYDVRAVRVMVDDVA 280
>gi|397687585|ref|YP_006524904.1| GTP pyrophosphokinase [Pseudomonas stutzeri DSM 10701]
gi|395809141|gb|AFN78546.1| GTP pyrophosphokinase [Pseudomonas stutzeri DSM 10701]
Length = 747
Score = 133 bits (334), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 84/126 (66%), Gaps = 9/126 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K +YSI+ KM++K + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIQPEIDGRAKHIYSIWRKMQKKGLQFSQIYDVRAVRVLV---------PEVRDCYTALG 305
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVLGPEGKVLEVQIRTLAMHEEAELGVCAH 365
Query: 514 WLYKET 519
W YK T
Sbjct: 366 WRYKGT 371
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 17/143 (11%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------------- 193
D++VA +++ V + L + + FG VAKL+ GV R++ I+
Sbjct: 83 DSLVAAVIYRGVREGKVQLADVHQRFGPVVAKLIEGVLRMAAISASLNPRESLVLGSQTQ 142
Query: 194 -QLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+ LR+ V+ + +LA+R +R + K VA+E I+ LA RLG+
Sbjct: 143 VENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDDKRHRVAREVFDIYAPLAHRLGI 202
Query: 253 WALKAELEDLCFAVLQPQIFRKM 275
+K ELEDL F L+P+ ++++
Sbjct: 203 GHIKWELEDLSFRYLEPEQYKQI 225
Score = 40.0 bits (92), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 64/150 (42%), Gaps = 27/150 (18%)
Query: 668 IQITHLTEEEESEYWAVVSAVFEGKPVDSVVSRRSSDSVAPTSMEASINNKVRLLRTMLR 727
+QI L EE+E ++G V+S SSD K+ LR +L
Sbjct: 347 VQIRTLAMHEEAELGVCAHWRYKGTDVNS-----SSDHY---------EEKIAWLRQVLE 392
Query: 728 WEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKV-- 785
W E+L +GG A+ + P V + P+G + L G+T D A +V
Sbjct: 393 WHEEL--------GDIGGLADQLRVDIEPDRVYVFT-PDGHAIDLPKGATPLDFAYRVHT 443
Query: 786 --GLEGKLVLVNGQLVLPNTELKDGDIVEV 813
G + VNG++V N L+ G+ VE+
Sbjct: 444 EIGHNCRGAKVNGRIVPLNYSLQTGEQVEI 473
>gi|237809484|ref|YP_002893924.1| (p)ppGpp synthetase I SpoT/RelA [Tolumonas auensis DSM 9187]
gi|237501745|gb|ACQ94338.1| (p)ppGpp synthetase I, SpoT/RelA [Tolumonas auensis DSM 9187]
Length = 743
Score = 133 bits (334), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 85/125 (68%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K +YSI+ KM++K++ +YD RA+RVV +Q CY+ L
Sbjct: 241 GIDAEVYGRPKHIYSIWRKMQKKNLNFSDLYDVRAVRVVT---------KRLQDCYAALG 291
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
I+H LW I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT++MH+ +E G+AAH
Sbjct: 292 IIHTLWHHIPREFDDYVANPKPNGYQSIHTVVLGPEGKTVEIQIRTEQMHQESELGVAAH 351
Query: 514 WLYKE 518
W YKE
Sbjct: 352 WKYKE 356
Score = 47.4 bits (111), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 15/142 (10%)
Query: 149 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGV---SRLSYINQL----LRRHRR 201
+DT+ A L +++ A ++ + +FG +++L+ GV + ++ QL + +
Sbjct: 70 MDTLKAAALFPLIEPAYMTVEQVTADFGAVISQLLQGVIDIDAIRFLQQLSSASVSDAQV 129
Query: 202 INVNQGTLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 253
NV + L E LA+R+ +R + VA+E I+ LA+RLG+
Sbjct: 130 DNVRRMLLAMVEDVRAVVIKLAERIACLREVKNANEETRVLVAKEISNIYAPLANRLGIG 189
Query: 254 ALKAELEDLCFAVLQPQIFRKM 275
LK ELEDL F L P ++++
Sbjct: 190 QLKWELEDLSFRYLHPDTYKQI 211
>gi|58581359|ref|YP_200375.1| ATP:GTP 3'-pyrophosphotransferase [Xanthomonas oryzae pv. oryzae
KACC 10331]
gi|58425953|gb|AAW74990.1| ATP:GTP 3'-pyrophosphotranferase [Xanthomonas oryzae pv. oryzae
KACC 10331]
Length = 765
Score = 133 bits (334), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 375 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 432
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 258 VARERYLEAVKRTLSAALAQQGLRADVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 317
Query: 433 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 492
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 318 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 368
Query: 493 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 369 IEIQIRTHEMHAQAELGVAAHWKYKEGGK 397
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR L + A+AQ T I LA+RLG+W +K ELEDL F L+P +R
Sbjct: 188 LARQLSRMRVADRLSKEQRHALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPDTYR 247
Query: 274 KM 275
++
Sbjct: 248 RI 249
>gi|188990613|ref|YP_001902623.1| GTP diphosphokinase [Xanthomonas campestris pv. campestris str.
B100]
gi|167732373|emb|CAP50565.1| GTP diphosphokinase [Xanthomonas campestris pv. campestris]
Length = 770
Score = 133 bits (334), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 83/128 (64%), Gaps = 9/128 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM++K + ++YD RA+RV+V D + CY+ L
Sbjct: 284 GLRADVSGRPKHIYSIWRKMQKKRLSFDQLYDVRAVRVMVDD---------VAACYAALG 334
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
VH LW P+ EFDDYI PK + Y+SLHTAV GP+G +E+QIRT +MH AE G+AAH
Sbjct: 335 AVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRTIEIQIRTHEMHAQAELGVAAH 394
Query: 514 WLYKETGN 521
W YKE G
Sbjct: 395 WKYKEGGK 402
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR + RA+AQ T I LA+RLG+W +K ELEDL F L+P +R
Sbjct: 193 LARQLARMRVADRQSEEERRALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPDTYR 252
Query: 274 KMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAV 332
++ D+ R R Y + +S+ + +D + +H+ S+ + + +
Sbjct: 253 RIARDVDETRVARER--YIEAVKRTLSAALAQQGLRAD---VSGRPKHIYSIWRKMQKKR 307
Query: 333 VPFDILSDRRKRTKFLHDLA 352
+ FD L D R + D+A
Sbjct: 308 LSFDQLYDVRAVRVMVDDVA 327
>gi|219849404|ref|YP_002463837.1| (p)ppGpp synthetase I SpoT/RelA [Chloroflexus aggregans DSM 9485]
gi|219543663|gb|ACL25401.1| (p)ppGpp synthetase I, SpoT/RelA [Chloroflexus aggregans DSM 9485]
Length = 789
Score = 133 bits (334), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 113/200 (56%), Gaps = 24/200 (12%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+++A A A AH GQ R++G PY+ H I IL L + +++ A +LHDVV+D
Sbjct: 91 IRRAYALAAVAHEGQRRQSGQPYIDHPIEVAIILLDL-----RLDTESIAAALLHDVVED 145
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLS-YINQLLRRHRRINVNQGTLGHE---------- 212
+ IE FG +VA LV GV++LS Y N+ R + GT
Sbjct: 146 TGVPIEVIERFFGKQVANLVDGVTKLSGYENKT-----REEIQAGTYRKLIIASADDPRV 200
Query: 213 ---ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 269
+LADRLHNMRTI+A PP K + VA+ETL I+ LA RLG+W +K+ELEDL F VL P
Sbjct: 201 VLIKLADRLHNMRTIHATPPNKQQRVARETLDIYAPLAHRLGMWQMKSELEDLAFKVLHP 260
Query: 270 QIFRKMRADLASMWSPRNRV 289
++++ LA R+R+
Sbjct: 261 DRYQEIARGLAMRKEARDRI 280
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 83/130 (63%), Gaps = 7/130 (5%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ ++ R K +YSI+ KM RK V + ++YD A+R++V D N + CY L
Sbjct: 296 GIKAEVTGRSKHIYSIWRKMERKGVPLERIYDQLAVRIIVDDPNN-----EVGACYQALG 350
Query: 454 IVHRL--WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 511
+VH W P+ EFDDYI PK S Y+S+HT V P+G EVQIR++KMHE AEHG+A
Sbjct: 351 VVHSKMNWTPVMQEFDDYIAAPKESSYRSIHTTVILPEGLHCEVQIRSRKMHEEAEHGIA 410
Query: 512 AHWLYKETGN 521
AHW YKE N
Sbjct: 411 AHWRYKEGFN 420
>gi|261854663|ref|YP_003261946.1| (p)ppGpp synthetase I SpoT/RelA [Halothiobacillus neapolitanus c2]
gi|261835132|gb|ACX94899.1| (p)ppGpp synthetase I, SpoT/RelA [Halothiobacillus neapolitanus c2]
Length = 732
Score = 133 bits (334), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 116/422 (27%), Positives = 181/422 (42%), Gaps = 98/422 (23%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
V+ A F +H GQ R++G+PY++H + ILA L T+ A ILH
Sbjct: 45 HVRDAFIFGANSHVGQARQSGEPYISHPVAVAEILAGLHMDEA-----TLTAAILH---- 95
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMR 222
D E EE VA+ V+R L D + +
Sbjct: 96 DVIEDTAVAREEI---VARFGEEVAR-------------------------LVDGVSKLT 127
Query: 223 TIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL-CFAVLQPQIFRKMRADLAS 281
I A+A+A +++ R+ L L L ++ V++P R++ +
Sbjct: 128 QIRFKSKAEAQAANFRKMMMAMVEDVRVILIKLADRLHNMRTLGVMRPDKRRRIARETLD 187
Query: 282 MWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSD 340
+++P +R+G + R +D F+ A+ P
Sbjct: 188 IYTPIASRLGLN------------SLRHELEDMGFS--------------ALYP------ 215
Query: 341 RRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLS 400
R + + + + + +K V AGI +E I G+ V +
Sbjct: 216 --TRYRVISEAVRKARGNRKEIV---AGI-------------EERFIHRFGEEGLRVQID 257
Query: 401 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 460
+R K YSI+ KM +K + +V+D A+R+V ++ CY L IVH L+
Sbjct: 258 AREKRPYSIYRKMMQKHLTFKEVFDVFAVRIVAN---------SVDDCYRALGIVHNLYK 308
Query: 461 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 520
P+ G F DYI PK +GYQSLHT + GP G LEVQIRT +MH++AE G+AAHWLYK +
Sbjct: 309 PLPGRFKDYIAIPKANGYQSLHTILFGPHGIPLEVQIRTNEMHQFAESGIAAHWLYKSSH 368
Query: 521 NK 522
++
Sbjct: 369 DQ 370
>gi|395008896|ref|ZP_10392492.1| (p)ppGpp synthetase, RelA/SpoT family [Acidovorax sp. CF316]
gi|394313118|gb|EJE50199.1| (p)ppGpp synthetase, RelA/SpoT family [Acidovorax sp. CF316]
Length = 742
Score = 133 bits (334), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 89/141 (63%), Gaps = 11/141 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+ ++ R K +YSI KMR K + +VYD RALRVVV P ++ CY+ L
Sbjct: 249 ISASVQGRPKHIYSIVKKMRGKSLNFDQVYDIRALRVVV---------PTVKDCYAALSW 299
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGP-DGSALEVQIRTQKMHEYAEHGLAAH 513
VH+ + PI EFDDYI PK +GYQSLHT V+ +G +E+QIRTQ MHE+AEHG+AAH
Sbjct: 300 VHQRFAPIVEEFDDYIAKPKANGYQSLHTIVRDDLNGKPIEIQIRTQAMHEHAEHGVAAH 359
Query: 514 WLYKETGNK-LQSISSMDESD 533
W YKE G K +S+ E D
Sbjct: 360 WAYKEAGAKGYVGVSATGEYD 380
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 86/193 (44%), Gaps = 24/193 (12%)
Query: 102 EQVQ---KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILH 158
EQV +A AFA+ + +G+ L H IL + S +A +V +H
Sbjct: 31 EQVNALVRARAFAEPLIASEALDSGENTLAHADAVAAILKSIGGSEAMQAASYLVYSCVH 90
Query: 159 DVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI--------NVNQGTLG 210
++ E I + FG A L ++L + Q R + + NV + L
Sbjct: 91 --LNKPEEV---ITKAFGANFAALAVETTKLVRVQQQARGAQALDDPALQTENVRKMLLA 145
Query: 211 HEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 262
LA RL +R A + ++A+E+L ++ LA+RLG+W +K ELEDL
Sbjct: 146 FSRDLRVVMLRLASRLQTLRFHAATKLPMSPSLARESLQVFAQLANRLGIWQVKWELEDL 205
Query: 263 CFAVLQPQIFRKM 275
F L+P ++++
Sbjct: 206 SFRFLEPDTYKEV 218
>gi|289662001|ref|ZP_06483582.1| ATP:GTP 3'-pyrophosphotranferase [Xanthomonas campestris pv.
vasculorum NCPPB 702]
Length = 719
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 375 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 432
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 212 VARERYLEAVKRTLSAALAQQGLGAEVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 271
Query: 433 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 492
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 272 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 322
Query: 493 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 323 IEIQIRTHEMHAQAELGVAAHWKYKEGGK 351
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR L + RA+AQ T I LA+RLG+W +K ELEDL F L+P+ +R
Sbjct: 142 LARQLSRMRVADRLSEEQRRALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPETYR 201
Query: 274 KM 275
++
Sbjct: 202 RI 203
>gi|289667030|ref|ZP_06488105.1| ATP:GTP 3'-pyrophosphotranferase [Xanthomonas campestris pv.
musacearum NCPPB 4381]
Length = 719
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 375 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 432
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 212 VARERYLEAVKRTLSAALAQQGLGAEVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 271
Query: 433 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 492
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 272 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 322
Query: 493 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 323 IEIQIRTHEMHAQAELGVAAHWKYKEGGK 351
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR L + RA+AQ T I LA+RLG+W +K ELEDL F L+P+ +R
Sbjct: 142 LARQLSRMRVADRLSEEQRRALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPETYR 201
Query: 274 KM 275
++
Sbjct: 202 RI 203
>gi|40063134|gb|AAR37981.1| GTP pyrophosphokinase [uncultured marine bacterium 561]
Length = 744
Score = 132 bits (333), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 62/121 (51%), Positives = 83/121 (68%), Gaps = 9/121 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM+RK +G +V+D RALR++V D + CY L +VH +
Sbjct: 261 ITGRAKHIYSIWRKMQRKGIGFSQVHDIRALRILVDD---------VAACYQTLGVVHGM 311
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W I EFDDYI +PK +GY+SLHTAV GP+G LEVQIRT++MHE AE G+ AHW YK
Sbjct: 312 WRNIPNEFDDYIASPKENGYRSLHTAVIGPEGKILEVQIRTEEMHEEAELGVCAHWRYKA 371
Query: 519 T 519
+
Sbjct: 372 S 372
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 18/144 (12%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL-------------- 195
D ++AG L+ V S+ +++ FGD+VA L+ GV R++ ++ L
Sbjct: 83 DALIAGFLYRSVRQQVISIDTLKHRFGDKVASLLDGVLRMAAVSDLTDLSDVPVLGQSAA 142
Query: 196 ----LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLG 251
+RR V+ + +LA+R MR + + + +A E ++ LA RLG
Sbjct: 143 PNINIRRMLVAIVDDVRVALIKLAERTVAMRGLKGAEEHRQQRIAWEVFNVYAPLAHRLG 202
Query: 252 LWALKAELEDLCFAVLQPQIFRKM 275
+ LK ELEDL F + ++
Sbjct: 203 VGHLKWELEDLSFRYTNKDAYHRI 226
>gi|225850169|ref|YP_002730403.1| GTP pyrophosphokinase [Persephonella marina EX-H1]
gi|225646582|gb|ACO04768.1| GTP pyrophosphokinase [Persephonella marina EX-H1]
Length = 716
Score = 132 bits (333), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 118/209 (56%), Gaps = 19/209 (9%)
Query: 84 GTFIVDGVDVTGYPIFNDEQVQK---AIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAML 140
G + D + Y D+ +QK A + H GQFRK+G+PY H I ++LA L
Sbjct: 7 GELVEDLIKKVDY--LEDQDIQKIREAAYYIIEKHEGQFRKSGEPYYIHPIEAAKVLADL 64
Query: 141 IPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH- 199
K T++AG+LHDVV+D ++ I+E FG+ VA +V GV+++ N +
Sbjct: 65 -----KLDRTTIIAGLLHDVVEDTDTTIDEIKERFGETVALIVDGVTKIGKYNFNSKEEA 119
Query: 200 -----RRINVNQGT---LGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLG 251
R++ V+ + +LADRLHN+RT+ LP K + +A+ETL I+ LA+RLG
Sbjct: 120 EAENFRKMLVSMAKDIRVILVKLADRLHNIRTLDPLPEYKQKRIAKETLDIYAPLAARLG 179
Query: 252 LWALKAELEDLCFAVLQPQIFRKMRADLA 280
LW +KAELED F L P+ ++K+ LA
Sbjct: 180 LWKIKAELEDTSFKYLYPEAYKKITTYLA 208
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 73/124 (58%), Gaps = 9/124 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
++ + R K LYSI+ K RKD+ + +YD +RV+V I+ CY L
Sbjct: 233 NIKADIQYRAKHLYSIYEKTLRKDLSLSDIYDVYGVRVLVH---------TIKDCYLALG 283
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
++H LW P+ G F DYI PK + YQ+LHT V P G +E+QI+T KMH AE G+AAH
Sbjct: 284 LIHSLWPPVPGRFKDYISLPKSNMYQALHTTVVAPKGKFVEIQIKTYKMHRIAEEGIAAH 343
Query: 514 WLYK 517
W YK
Sbjct: 344 WRYK 347
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 10/95 (10%)
Query: 729 EEQLRSEASLRQSKLGGKANGNPD--SVVPGEV----VIVCWPNGEIMRLRSGSTAADAA 782
E+ L+S LR K N + + S V G++ V V P G++++L GST D A
Sbjct: 354 EKDLKSFTWLRNILESIKENKDTEIISTVKGDLSNEEVYVFTPKGDLVKLPLGSTPVDFA 413
Query: 783 MK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
+ VG VNG++V +T+LK+GD+VE+
Sbjct: 414 YQIHTQVGHRTAGAKVNGKMVPLDTKLKNGDVVEI 448
>gi|119503992|ref|ZP_01626073.1| RelA/SpoT protein [marine gamma proteobacterium HTCC2080]
gi|119459995|gb|EAW41089.1| RelA/SpoT protein [marine gamma proteobacterium HTCC2080]
Length = 744
Score = 132 bits (333), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 62/119 (52%), Positives = 82/119 (68%), Gaps = 9/119 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM+RK +G +V+D RALR++V D + CY L +VH +
Sbjct: 261 ITGRAKHIYSIWRKMQRKGIGFSQVHDIRALRILVDD---------VAACYQTLGVVHGM 311
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 517
W I EFDDYI +PK +GY+SLHTAV GP+G LEVQIRT++MHE AE G+ AHW YK
Sbjct: 312 WRNIPNEFDDYIASPKENGYRSLHTAVIGPEGKILEVQIRTEEMHEEAELGVCAHWRYK 370
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 18/144 (12%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL-------------- 195
D ++AG L+ V S+ ++ FGD+VA L+ GV R++ ++ L
Sbjct: 83 DALIAGFLYRSVRQQVISIDTLRHRFGDKVASLLDGVLRMAAVSDLTDLSDVPVLGQSAA 142
Query: 196 ----LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLG 251
+RR V+ + +LA+R MR + + + +A E ++ LA RLG
Sbjct: 143 PNINIRRMLVAIVDDVRVALIKLAERTVAMRGLKGAEEHRQQRIAWEVFNVYAPLAHRLG 202
Query: 252 LWALKAELEDLCFAVLQPQIFRKM 275
+ LK ELEDL F + ++
Sbjct: 203 VGHLKWELEDLSFRYTNKDAYHRI 226
>gi|424776494|ref|ZP_18203475.1| GTP pyrophosphokinase [Alcaligenes sp. HPC1271]
gi|422888314|gb|EKU30703.1| GTP pyrophosphokinase [Alcaligenes sp. HPC1271]
Length = 756
Score = 132 bits (333), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 82/122 (67%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+S R K ++SI++KMR K + +++D RALRV+V D+ + CY L +VH L
Sbjct: 244 VSGRPKHIFSIWNKMRNKHLDFDQLFDLRALRVIVDDE---------RSCYHTLAVVHSL 294
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W P+ EFDDYI PKP+GY+SLHT + G E+QIRT+ MH++AE+G+AAHW YKE
Sbjct: 295 WTPVPEEFDDYISRPKPNGYRSLHTVIADAQGRCYEIQIRTRDMHQFAEYGMAAHWRYKE 354
Query: 519 TG 520
G
Sbjct: 355 AG 356
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 77/176 (43%), Gaps = 24/176 (13%)
Query: 122 TGDPYLTHCIHTGRILAMLIPSSGKRA--VDTVVAGILHDVVDDACESLGSIEEEFGDEV 179
TG+P +HC ILA L + RA + V +V D +++ FG EV
Sbjct: 44 TGEPLDSHCAQVALILAGLGVDAQTRASALLAVTPAPGPEVKQD------PVQKAFGAEV 97
Query: 180 AKLVAGVSRLSYINQLL--RRHRRINVNQGTLGHE--------------ELADRLHNMRT 223
LV G L + L + + +Q + + LA RL ++R
Sbjct: 98 MTLVRGSRALYRLGSLTGQAKEQTGGGDQKEMKRKMLLAMAADLRIVMMRLASRLQSLRW 157
Query: 224 IYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 279
A+ETL ++ LA+RLG+W +K E+EDL F L P++++ + + L
Sbjct: 158 YRQSKTVCPVEFARETLELYTPLANRLGIWQIKWEMEDLAFRFLNPEVYKNIASKL 213
>gi|456063168|ref|YP_007502138.1| (P)ppGpp synthetase I, SpoT/RelA [beta proteobacterium CB]
gi|455440465|gb|AGG33403.1| (P)ppGpp synthetase I, SpoT/RelA [beta proteobacterium CB]
Length = 679
Score = 132 bits (333), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 62/132 (46%), Positives = 86/132 (65%), Gaps = 12/132 (9%)
Query: 387 ISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQ 446
++ ++I G + R K +YSI+ KM+ K + +YD RA RV+V D ++
Sbjct: 204 LTAAHIQG---EVQGRPKHIYSIWKKMQGKSLDFANLYDVRAFRVLVDD---------VK 251
Query: 447 CCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYA 506
CY++L IVH +W P+ EFDDYI PKP+GYQSLHT V G+A E+Q+RT +MH+ A
Sbjct: 252 SCYAILGIVHNVWQPVPREFDDYIARPKPNGYQSLHTVVMDEHGTAFEIQVRTNEMHQQA 311
Query: 507 EHGLAAHWLYKE 518
E+GLAAHW YKE
Sbjct: 312 EYGLAAHWRYKE 323
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 69/153 (45%), Gaps = 33/153 (21%)
Query: 170 SIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL---GHEE------------- 213
S+ + GDE AKL+ G L L R N G L G EE
Sbjct: 57 SLTKLIGDESAKLLIGYRGLRQAQAKLVR------NDGGLSISGQEEMLRKMLLAFGDDL 110
Query: 214 ------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL 267
LA RL +R I +A AQE L I SLA+RLG+W +K E+EDL F VL
Sbjct: 111 RVVLIYLASRLQTLRWITQEKLEMPKAWAQEILNIDASLANRLGIWQMKWEMEDLAFRVL 170
Query: 268 QPQIFRKMRADLASMWSPRNRVGYSRRITTIVS 300
P+I+R D+A M + R+ I IVS
Sbjct: 171 SPEIYR----DIAKMLDGK-RIERESFIEQIVS 198
>gi|399116544|emb|CCG19351.1| GTP pyrophosphokinase [Taylorella asinigenitalis 14/45]
Length = 761
Score = 132 bits (333), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 90/135 (66%), Gaps = 9/135 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K ++SI++KM+ K + +YD A+RV+V ++ CY+ L
Sbjct: 252 GIQSDVSGRAKHIFSIYNKMKNKSLKFEDLYDLLAIRVIVQNERD---------CYTTLS 302
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
VH + P+ +FDDYI PKP+GY+SLHT V+ +G+ EVQIRTQKMHE+AE+G+AAH
Sbjct: 303 YVHSNYHPVMEQFDDYIARPKPNGYRSLHTVVRDDNGAVFEVQIRTQKMHEFAEYGMAAH 362
Query: 514 WLYKETGNKLQSISS 528
W YKE G K ++S+
Sbjct: 363 WRYKEAGAKGGTVSA 377
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 26/160 (16%)
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLS------------------YIN 193
VVA D + + + I ++FG+E+ LV G L Y
Sbjct: 81 VVAAPDSDHISEQAKFKTKIMDKFGEEIFDLVEGAQTLKRVGIVAHQASLPTAQQELYQQ 140
Query: 194 QLLRRHRRINVNQGTLGHEELADRLHNMR----TIYALPPAKARAVAQETLLIWCSLASR 249
+LLR+ + LA RL +R + PP Q+ ++ LA+R
Sbjct: 141 ELLRKMLLAMATDLRIVLIRLASRLQTLRWFVDSKLVCPPE----FLQQNRTLYAPLANR 196
Query: 250 LGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV 289
LG+W +K ELEDL F P+ +R++ L S + R ++
Sbjct: 197 LGIWQIKWELEDLSFRFENPETYREIANRLESTRAEREQL 236
>gi|359461025|ref|ZP_09249588.1| ppGpp 3'-pyrophosphohydrolase [Acaryochloris sp. CCMEE 5410]
Length = 732
Score = 132 bits (333), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 78/190 (41%), Positives = 107/190 (56%), Gaps = 14/190 (7%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A F + H GQ R +G+PY+ H + +L L S+ + AG LHDVV+D
Sbjct: 21 RAFNFGYQLHEGQRRASGEPYIAHPVSVAELLRDLGGSAA-----MIAAGFLHDVVEDTD 75
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLGHEE--------LAD 216
+ +IE EFG EV +LV GV++LS N + R N + L + LAD
Sbjct: 76 VTPETIEAEFGLEVRQLVEGVTKLSKFNFSTKTEREAENFRRMFLAMAQDIRVIVVKLAD 135
Query: 217 RLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 276
RLHNMRT+ LPPAK R +AQET ++ LA+RLG+W K ELEDL F L+P +RKM+
Sbjct: 136 RLHNMRTLEHLPPAKQRRIAQETRDVFAPLANRLGIWRFKWELEDLAFKYLEPDTYRKMQ 195
Query: 277 ADLASMWSPR 286
+A + R
Sbjct: 196 QLVADKRTDR 205
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 76/126 (60%), Gaps = 9/126 (7%)
Query: 397 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 456
+ +S R K L+SI KM R+ H++YD A+RV+V + CY L +VH
Sbjct: 228 LEISGRPKHLFSISQKMERQQKEFHEIYDVAAVRVIVKTN---------EECYRALAVVH 278
Query: 457 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 516
+ PI G F DYI PK + YQSLHT V G G LEVQIRT+ MH AE+G+AAHW Y
Sbjct: 279 DCFRPIPGRFKDYIGLPKSNRYQSLHTVVIGLGGRPLEVQIRTEAMHHIAEYGIAAHWKY 338
Query: 517 KETGNK 522
KE+ N+
Sbjct: 339 KESSNQ 344
>gi|347538471|ref|YP_004845895.1| (p)ppGpp synthetase I SpoT/RelA [Pseudogulbenkiania sp. NH8B]
gi|345641648|dbj|BAK75481.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudogulbenkiania sp. NH8B]
Length = 733
Score = 132 bits (333), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 60/122 (49%), Positives = 87/122 (71%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KMR+K++ ++YD RA+RV+V +++ CY++L ++H +
Sbjct: 257 VAGRPKHIYSIWKKMRKKNLDFSELYDIRAVRVLV---------ESVKDCYTVLGLIHSM 307
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W P+ GEFDDYI +PK + Y+SLHTAV GP+ +EVQIRT MHE+AE G+AAHW YKE
Sbjct: 308 WQPVPGEFDDYISHPKANDYRSLHTAVIGPEDRVIEVQIRTFDMHEHAEFGVAAHWRYKE 367
Query: 519 TG 520
G
Sbjct: 368 GG 369
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 24/189 (12%)
Query: 106 KAIAFAKRAHHGQ-FRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDA 164
+A A+ + G+ +TG+ +H + I+A L D VVA +L V D
Sbjct: 39 RAFNSARELYAGKRLTQTGEDVFSHAVSAAAIVADL-----DLLTDAVVATLLFAVPDFR 93
Query: 165 CESLGSIEEEFGDEVAKLVAGVSRLSYINQLLR---------RHRRINVNQGTLGHE--- 212
+ + EF V LV GV+R+ + ++ R R R+ + L
Sbjct: 94 EDWHEWMTNEFNPTVVVLVDGVNRVRRLTEIARIDKLDTPEERARQAETMRKMLLAMVAD 153
Query: 213 ------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAV 266
+LA R M + P A R +AQET+ ++ LA+RLG+W +K ELEDL F
Sbjct: 154 IRVVLIKLAWRTQTMHYLTECPEAVRRTIAQETMDVFAPLANRLGVWQIKWELEDLAFRH 213
Query: 267 LQPQIFRKM 275
++P+ ++K+
Sbjct: 214 IEPENYKKI 222
Score = 39.7 bits (91), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 13/106 (12%)
Query: 712 EASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMR 771
+A+ K+ LR +L W E++ + L + + + + + V PNG ++
Sbjct: 372 DAAYEEKISWLRQLLDWREEVSDRSGLTDAF---------KTELFSDTIYVLTPNGRVLA 422
Query: 772 LRSGSTAADAAMKV----GLEGKLVLVNGQLVLPNTELKDGDIVEV 813
L SG+TA D A + G + V GQ+V +T L++G VE+
Sbjct: 423 LPSGATAIDFAYAIHTDLGHRCRGAKVEGQIVPLSTPLQNGQRVEI 468
>gi|372270282|ref|ZP_09506330.1| GTP pyrophosphokinase [Marinobacterium stanieri S30]
Length = 758
Score = 132 bits (333), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 65/122 (53%), Positives = 84/122 (68%), Gaps = 9/122 (7%)
Query: 401 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 460
R K +YSI+ KM+RK + ++VYD RA+R++V P I+ CY++L IVH LW
Sbjct: 265 GRAKHIYSIWRKMQRKSIDFNQVYDVRAVRILV---------PEIRDCYTVLGIVHGLWR 315
Query: 461 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 520
I EFDDYI +PKP+GY+SLHTAV GP+G LE+QIRT MHE AE G+ AH LYK T
Sbjct: 316 NIPHEFDDYIASPKPNGYRSLHTAVFGPEGKVLEIQIRTFSMHEEAELGVCAHHLYKGTD 375
Query: 521 NK 522
+
Sbjct: 376 TQ 377
>gi|350552242|ref|ZP_08921447.1| (p)ppGpp synthetase I, SpoT/RelA [Thiorhodospira sibirica ATCC
700588]
gi|349794895|gb|EGZ48703.1| (p)ppGpp synthetase I, SpoT/RelA [Thiorhodospira sibirica ATCC
700588]
Length = 726
Score = 132 bits (333), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 98/164 (59%), Gaps = 15/164 (9%)
Query: 396 EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIV 455
+ + R K +YSI+ KM++K + +VYD RA+RV+V I CY+ L +V
Sbjct: 243 QAEVRGRPKHIYSIWRKMQKKQLDFEEVYDLRAVRVIV---------ERISSCYTALGVV 293
Query: 456 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 515
H LW I EFDDYI NPK +GYQSLHTAV GP +EVQIRT+ M E+AE G+AAHW
Sbjct: 294 HSLWPHIPREFDDYIANPKDNGYQSLHTAVIGPQAKVVEVQIRTRDMDEFAELGVAAHWR 353
Query: 516 YKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLD---TDLFQ 556
YKE G + ++++ S L DD+ LD ++LFQ
Sbjct: 354 YKEGGTEDKALTRAIAS---LRRLLDNKEDDNELLDSFRSELFQ 394
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 83/185 (44%), Gaps = 27/185 (14%)
Query: 126 YLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHDVVDDACESLGSIEEEFGDEVAKLV 183
Y HC+ IL +L VD T++A +L D I+ FG+ VA LV
Sbjct: 53 YHPHCLDVAEILRVL-------GVDRETLIATLLIDAHLQETLDSNEIKSNFGERVAGLV 105
Query: 184 AGVSRLSYINQL-------------LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPA 230
V L + LRR V+ +LA RL +R + A P +
Sbjct: 106 NNVHWLITFKGIPRETASQPEEAERLRRMLLAMVDDVRAVLIKLAYRLQRLRNLAAHPDS 165
Query: 231 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVG 290
A A+ETL I+ LA+RLG+ LK E+EDL F +L+P+ +R++ L NR G
Sbjct: 166 TTLAYARETLDIFSPLANRLGIGQLKWEMEDLAFRILEPEEYRRLACLLEE-----NRTG 220
Query: 291 YSRRI 295
R I
Sbjct: 221 RERYI 225
>gi|54025654|ref|YP_119896.1| ppGpp synthetase [Nocardia farcinica IFM 10152]
gi|54017162|dbj|BAD58532.1| putative ppGpp synthetase [Nocardia farcinica IFM 10152]
Length = 798
Score = 132 bits (333), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 78/184 (42%), Positives = 105/184 (57%), Gaps = 12/184 (6%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP N Q+QKA A H QFRK+GDPY+TH + ILA L + T+VA
Sbjct: 87 YPKANLAQLQKAFDVADERHAHQFRKSGDPYITHPLAVANILAELGMDT-----TTLVAA 141
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN-------QLLRRHRRINVNQGT 208
+LHD V+D +L + EFGDEVA LV GV++L +N + +R+
Sbjct: 142 LLHDTVEDTGYTLDQLRAEFGDEVAHLVDGVTKLDKVNLGAAAEAETIRKMIIAMARDPR 201
Query: 209 LGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQ 268
+ ++ADRLHNMRT+ LPP K A+ETL + LA RLG+ +K ELEDL FA+L
Sbjct: 202 VLVIKVADRLHNMRTMRFLPPEKQAKKAKETLEVIAPLAHRLGMATVKWELEDLAFAILH 261
Query: 269 PQIF 272
P+ +
Sbjct: 262 PKKY 265
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 76/137 (55%), Gaps = 9/137 (6%)
Query: 386 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 445
+++T + + R K +SI+ KM K ++D +R++ + +
Sbjct: 290 IVNTLAASRINAVVEGRPKHYWSIYQKMIVKGKDFDDIHDLVGIRILCDE---------V 340
Query: 446 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 505
+ CY+ + +VH LW P+ G F DYI P+ YQSLHT V GPDG LEVQIRT MH
Sbjct: 341 RDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPDGKPLEVQIRTHDMHRT 400
Query: 506 AEHGLAAHWLYKETGNK 522
AE G+AAHW YKET K
Sbjct: 401 AEFGIAAHWRYKETKGK 417
>gi|348589862|ref|YP_004874324.1| GTP pyrophosphokinase [Taylorella asinigenitalis MCE3]
gi|347973766|gb|AEP36301.1| GTP pyrophosphokinase [Taylorella asinigenitalis MCE3]
Length = 761
Score = 132 bits (333), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 90/135 (66%), Gaps = 9/135 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K ++SI++KM+ K + +YD A+RV+V ++ CY+ L
Sbjct: 252 GIQSDVSGRAKHIFSIYNKMKNKSLKFEDLYDLLAIRVIVQNERD---------CYTTLS 302
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
VH + P+ +FDDYI PKP+GY+SLHT V+ +G+ EVQIRTQKMHE+AE+G+AAH
Sbjct: 303 YVHSNYHPVMEQFDDYIARPKPNGYRSLHTVVRDDNGAVFEVQIRTQKMHEFAEYGMAAH 362
Query: 514 WLYKETGNKLQSISS 528
W YKE G K ++S+
Sbjct: 363 WRYKEAGAKGGTVSA 377
Score = 48.1 bits (113), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 26/160 (16%)
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLS------------------YIN 193
VVA D + + + I ++FG+E+ LV G L Y
Sbjct: 81 VVAAPDSDHITEQAKFKTKIMDKFGEEIFDLVEGAQTLKRVGIVAHQASLPTAQQELYQQ 140
Query: 194 QLLRRHRRINVNQGTLGHEELADRLHNMR----TIYALPPAKARAVAQETLLIWCSLASR 249
+LLR+ + LA RL +R + PP Q+ ++ LA+R
Sbjct: 141 ELLRKMLLAMATDLRIVLIRLASRLQTLRWFVDSKLVCPPE----FLQQNRTLYAPLANR 196
Query: 250 LGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV 289
LG+W +K ELEDL F P+ +R++ L + + R ++
Sbjct: 197 LGIWQIKWELEDLSFRFENPETYREIANRLEATRAEREQL 236
>gi|127512134|ref|YP_001093331.1| (p)ppGpp synthetase I SpoT/RelA [Shewanella loihica PV-4]
gi|126637429|gb|ABO23072.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella loihica PV-4]
Length = 734
Score = 132 bits (333), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 63/124 (50%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI+ KMR KD+ +++D RA+R+V +Q CY L +VH LW
Sbjct: 251 RPKHIYSIWKKMRGKDLTFDELFDVRAVRIVT---------ERLQDCYGALGVVHTLWHH 301
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT++MHE AE G+AAHW YKE
Sbjct: 302 IPKEFDDYVANPKPNGYQSIHTIVVGPEGKTVEIQIRTEQMHEDAELGVAAHWKYKEGTT 361
Query: 522 KLQS 525
QS
Sbjct: 362 GKQS 365
Score = 43.1 bits (100), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 15/146 (10%)
Query: 149 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRI----- 202
++T+ A ++ V D + + E FGD++ LV V + I L + R
Sbjct: 72 IETLQAAVIFVVFDAGLMTEEQMLELFGDKLTTLVNSVVTMDAIGALKVNEQSRNAEPQI 131
Query: 203 -NVNQGTLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 253
N+ + L E LA+R+ +R + +A+E I+ LA+RLG+
Sbjct: 132 DNIRKMLLAMVEDVRAVVIKLAERICLLREVKNADEETRVLLAREIADIYAPLANRLGIG 191
Query: 254 ALKAELEDLCFAVLQPQIFRKMRADL 279
LK ELED+ F L P ++ + L
Sbjct: 192 QLKWELEDISFRYLHPDTYKDIAKQL 217
>gi|218296101|ref|ZP_03496870.1| (p)ppGpp synthetase I, SpoT/RelA [Thermus aquaticus Y51MC23]
gi|218243478|gb|EED10007.1| (p)ppGpp synthetase I, SpoT/RelA [Thermus aquaticus Y51MC23]
Length = 726
Score = 132 bits (332), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 72/150 (48%), Positives = 97/150 (64%), Gaps = 7/150 (4%)
Query: 373 SLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 432
++ EEAL+++ L+ S + G EVT R K LYSI+ KM R+ + ++YD A+RV+
Sbjct: 222 AMEVLEEALKQDALLQ-SQLQGFEVT--GRPKHLYSIWKKMEREGKALEQIYDLLAVRVI 278
Query: 433 VGDK-NGTLHGPAI---QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGP 488
+ K + T + Q CY +L +VH LW PI G DYI PKP+GYQSLHT V
Sbjct: 279 LDPKPSPTEEAKGLREKQVCYHVLGLVHALWQPIPGRVKDYIAVPKPNGYQSLHTTVIAL 338
Query: 489 DGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
+G LEVQIRT++MH AE+G+AAHWLYKE
Sbjct: 339 EGLPLEVQIRTREMHRIAEYGIAAHWLYKE 368
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 111/202 (54%), Gaps = 17/202 (8%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
+ E+V KA FA+ AH GQ RK+G+PY+TH + ILA L + DTV AG+LHD
Sbjct: 22 DREKVHKAYLFAEEAHRGQLRKSGEPYITHPVAVAEILASL-----RMDADTVAAGLLHD 76
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLS----YINQLLRRHRRINVNQGTLGHEE-- 213
++D + +E FG V ++V G +++S + N R ++ Q + E
Sbjct: 77 TMEDCGVAGEELERRFGPAVRRIVEGETKVSKLYKFANLEGEEKRAEDLRQMFIAMAEDV 136
Query: 214 ------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL 267
LADRLHN+RT+ +P K + +AQETL I+ LA RLG+ +K ELEDL F L
Sbjct: 137 RIIIVKLADRLHNLRTLEHMPEGKQKRIAQETLEIYAPLAHRLGMGQIKWELEDLSFRYL 196
Query: 268 QPQIFRKMRADLASMWSPRNRV 289
P+ ++ + A L R R+
Sbjct: 197 HPEAYQALLARLQETQEARERM 218
>gi|418516885|ref|ZP_13083055.1| ATP:GTP 3'-pyrophosphotransferase [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
gi|410706482|gb|EKQ64942.1| ATP:GTP 3'-pyrophosphotransferase [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
Length = 723
Score = 132 bits (332), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 375 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 432
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 216 VARERYLEAVKRTLSAALVQQGLRAEVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 275
Query: 433 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 492
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 276 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 326
Query: 493 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 327 IEIQIRTFEMHAQAELGVAAHWKYKEGGK 355
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR L + RA+AQ T I LA+RLG+W +K ELEDL F L+P+ +R
Sbjct: 146 LARQLARMRVADRLSEDERRALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPETYR 205
Query: 274 KM 275
++
Sbjct: 206 RI 207
>gi|319651680|ref|ZP_08005807.1| GTP pyrophosphokinase [Bacillus sp. 2_A_57_CT2]
gi|317396747|gb|EFV77458.1| GTP pyrophosphokinase [Bacillus sp. 2_A_57_CT2]
Length = 744
Score = 132 bits (332), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 85/194 (43%), Positives = 108/194 (55%), Gaps = 27/194 (13%)
Query: 99 FNDEQ---VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAML--IPSSGKRAVDTVV 153
NDE V+KA FAK AH Q+RK+G+PY+ H I ILA L PS TV
Sbjct: 33 LNDEHAELVKKAYEFAKHAHREQYRKSGEPYIIHPIQVAGILADLEMDPS-------TVA 85
Query: 154 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRRINVNQG 207
AG LHDVV+D SL +IEE F EVA LV GV++L I Q HR++ V
Sbjct: 86 AGFLHDVVEDTEISLENIEESFNSEVAMLVDGVTKLGKIKYKSQEEQQAENHRKMFV--- 142
Query: 208 TLGHE------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 261
+ + +LADRLHNMRT+ LP K R ++ ETL I+ LA RLG+ +K ELED
Sbjct: 143 AMAQDIRVILIKLADRLHNMRTLKHLPAEKQRRISNETLEIFAPLAHRLGISKIKWELED 202
Query: 262 LCFAVLQPQIFRKM 275
L PQ + ++
Sbjct: 203 TALRYLNPQQYYRI 216
Score = 123 bits (308), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/133 (46%), Positives = 83/133 (62%), Gaps = 10/133 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L I+H
Sbjct: 251 ISGRPKHIYSIYRKMALQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLGIIHTC 301
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W P+ G F DYI PK + YQSLHT V GP G LEVQIRT MH AE G+AAHW YKE
Sbjct: 302 WKPMPGRFKDYIAMPKQNMYQSLHTTVIGPKGDPLEVQIRTMDMHRIAEFGIAAHWAYKE 361
Query: 519 TGNKLQSISSMDE 531
G ++ SS +E
Sbjct: 362 -GKRVNEGSSFEE 373
>gi|296135844|ref|YP_003643086.1| (p)ppGpp synthetase I SpoT/RelA [Thiomonas intermedia K12]
gi|295795966|gb|ADG30756.1| (p)ppGpp synthetase I, SpoT/RelA [Thiomonas intermedia K12]
Length = 738
Score = 132 bits (332), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 61/121 (50%), Positives = 77/121 (63%), Gaps = 9/121 (7%)
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI+ KM+ K + +V D RALR++VGD + CY+ L +VH +W
Sbjct: 243 RPKHIYSIWRKMQGKHLQFEQVMDLRALRIIVGD---------VSACYAALSVVHAMWAS 293
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ GEFDDYI PKP+GYQSLHT V+ G E+QIRT MH +AE G AAHW YKE G
Sbjct: 294 LPGEFDDYIAKPKPNGYQSLHTVVRTDSGQIFEIQIRTAAMHAHAEQGSAAHWAYKEAGA 353
Query: 522 K 522
K
Sbjct: 354 K 354
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 97/218 (44%), Gaps = 29/218 (13%)
Query: 101 DEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDV 160
D+++ +A A+A +TG+P + H IL + D A L+ V
Sbjct: 19 DQRIDQARAYALALIDTVVLETGEPAVEHADGVSAILREI-----GADADAQAAAYLNLV 73
Query: 161 VDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN----------QLLRRHRRINVNQGTLG 210
V + + FG+ +A L +L ++ +L RRH + V + LG
Sbjct: 74 VPQLAHPQDQLSKHFGEALAALSVETRKLVEVSRMARGGPDEAELRRRHTEL-VRRLLLG 132
Query: 211 HEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 262
LA RL ++R A A E++ ++ LA+RLG+W +K E+EDL
Sbjct: 133 FSRDLRVALLRLASRLQSLRYFTRTKQAAPAAFLAESMEVYAPLANRLGIWQVKWEMEDL 192
Query: 263 CFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVS 300
F ++QP++++ D+A R RV + I+T +S
Sbjct: 193 SFRLMQPEVYK----DIARKLDER-RVEREQGISTAIS 225
>gi|434402920|ref|YP_007145805.1| (p)ppGpp synthetase, RelA/SpoT family [Cylindrospermum stagnale PCC
7417]
gi|428257175|gb|AFZ23125.1| (p)ppGpp synthetase, RelA/SpoT family [Cylindrospermum stagnale PCC
7417]
Length = 756
Score = 132 bits (332), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 77/190 (40%), Positives = 110/190 (57%), Gaps = 14/190 (7%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A FA + H GQ+RK+G+PY+ H + +L L G A+ + AG LHDVV+D
Sbjct: 46 RAFQFAYQLHQGQYRKSGEPYIGHPVAVAGLLRDL---GGSPAM--IAAGFLHDVVEDTE 100
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYIN---------QLLRRHRRINVNQGTLGHEELAD 216
++ IEE FG EV +LV GV++LS IN + RR + +LAD
Sbjct: 101 VTIDQIEERFGPEVRQLVEGVTKLSKINFKSKTESQAENFRRMFLAMAQDIRVIVVKLAD 160
Query: 217 RLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 276
RLHNMRT+ +P K R +AQET I+ LA+RLG+W K ELEDL F L+P+ FR+++
Sbjct: 161 RLHNMRTLQFMPDEKRRRIAQETRDIFAPLANRLGIWQFKWELEDLAFKYLEPEAFRQIQ 220
Query: 277 ADLASMWSPR 286
++ + R
Sbjct: 221 TYVSEKRAAR 230
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 82/136 (60%), Gaps = 10/136 (7%)
Query: 397 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 456
V +S R K LY I+ KM R+ H++YD ALR++V + CY L +VH
Sbjct: 253 VDVSGRTKHLYGIYQKMHRQQKEFHEIYDLAALRIIVQTN---------EECYRALAVVH 303
Query: 457 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 516
+ PI G F DYI PKP+ YQSLHT V G G LEVQIRTQ+MH AE+G+AAHW Y
Sbjct: 304 DAFRPIPGRFKDYIGLPKPNRYQSLHTGVMGLTGRPLEVQIRTQEMHHVAEYGIAAHWKY 363
Query: 517 KETGNKLQS-ISSMDE 531
KE+G S ++ DE
Sbjct: 364 KESGGSNNSQVTGTDE 379
>gi|116492882|ref|YP_804617.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Pediococcus pentosaceus ATCC 25745]
gi|421894250|ref|ZP_16324740.1| bifunctional (p)ppGpp synthase/hydrolase RelA [Pediococcus
pentosaceus IE-3]
gi|116103032|gb|ABJ68175.1| Guanosine polyphosphate pyrophosphohydrolase/synthetase
[Pediococcus pentosaceus ATCC 25745]
gi|385272794|emb|CCG90112.1| bifunctional (p)ppGpp synthase/hydrolase RelA [Pediococcus
pentosaceus IE-3]
Length = 743
Score = 132 bits (332), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 112/197 (56%), Gaps = 23/197 (11%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
VQKA FA H Q+R++G+PY+ H I ILA L K +TV AG LHD V+D
Sbjct: 28 VQKACDFASYVHKEQYRQSGEPYIMHPIQVAGILANL-----KMDPETVAAGFLHDTVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRRINVNQGTLGHE----- 212
+LG IEE FG +VA +V GVS++S I QL HR++ + + +
Sbjct: 83 TLITLGDIEELFGKDVAVIVDGVSKISKIKYKSNQEQLAENHRKLLL---AMSQDIRVII 139
Query: 213 -ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
+LADRLHNMRT+ L P K R ++ ETL I+ LA RLG+ +K ELED+ L PQ
Sbjct: 140 VKLADRLHNMRTLQHLRPDKQRRISNETLEIYAPLAERLGISTIKWELEDISLRYLNPQQ 199
Query: 272 FRKMRADLASMWSPRNR 288
+ ++ + M S RN+
Sbjct: 200 YYRI---VHLMNSRRNQ 213
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 74/120 (61%), Gaps = 9/120 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+ R K +YSI+ KM + ++YD A+RV+ +++ CY++L +H
Sbjct: 239 IYGRPKHIYSIYRKMVDQHKQFSQIYDLLAIRVIT---------VSVRDCYAVLGAIHAK 289
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI G F DYI PK + YQSLHT V GP+G LE+QIRTQ MH AE+G+AAHW YKE
Sbjct: 290 WKPIPGRFKDYIAMPKANMYQSLHTTVVGPEGRPLEIQIRTQAMHRVAEYGVAAHWAYKE 349
>gi|390989283|ref|ZP_10259582.1| RelA/SpoT family protein [Xanthomonas axonopodis pv. punicae str.
LMG 859]
gi|372556041|emb|CCF66557.1| RelA/SpoT family protein [Xanthomonas axonopodis pv. punicae str.
LMG 859]
Length = 719
Score = 132 bits (332), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 375 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 432
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 212 VARERYLEAVKRTLSAALVQQGLRAEVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 271
Query: 433 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 492
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 272 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 322
Query: 493 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 323 IEIQIRTFEMHAQAELGVAAHWKYKEGGK 351
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR L + RA+AQ T I LA+RLG+W +K ELEDL F L+P+ +R
Sbjct: 142 LARQLARMRVADRLSEDERRALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPETYR 201
Query: 274 KM 275
++
Sbjct: 202 RI 203
>gi|146328161|emb|CAM58078.1| hypothetical protein [uncultured marine microorganism]
Length = 587
Score = 132 bits (332), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 63/127 (49%), Positives = 86/127 (67%), Gaps = 9/127 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K +YSI+ KM+RK ++ ++D RA+R++V D + CYS L
Sbjct: 105 GVKADISGRPKHIYSIWRKMQRKGSDLNHIFDVRAVRLLVDD---------VSECYSALG 155
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW + GEF+DYI NPK + Y+SLHTAV GP+G +EVQIRT +MH AE G+AAH
Sbjct: 156 VVHNLWSYLPGEFNDYIANPKENDYRSLHTAVIGPEGRTVEVQIRTHEMHRQAELGVAAH 215
Query: 514 WLYKETG 520
W YKE G
Sbjct: 216 WRYKEGG 222
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 41/62 (66%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
+A++L+ +R P + +A+A ET I+ +LA+RLG+W LK ELEDL F + P ++
Sbjct: 14 IAEQLYRLRCAKNAPKNEQQALAIETREIYAALANRLGVWQLKWELEDLAFRYIDPDTYK 73
Query: 274 KM 275
++
Sbjct: 74 QI 75
>gi|418521587|ref|ZP_13087630.1| ATP:GTP 3'-pyrophosphotransferase [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|410702432|gb|EKQ60938.1| ATP:GTP 3'-pyrophosphotransferase [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
Length = 727
Score = 132 bits (332), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 375 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 432
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 220 VARERYLEAVKRTLSAALAQQGLRAEVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 279
Query: 433 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 492
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 280 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 330
Query: 493 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 331 IEIQIRTFEMHAQAELGVAAHWKYKEGGK 359
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR L + RA+AQ T I LA+RLG+W +K ELEDL F L+P+ +R
Sbjct: 150 LARQLARMRVADRLSEDERRALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPETYR 209
Query: 274 KM 275
++
Sbjct: 210 RI 211
>gi|212702010|ref|ZP_03310138.1| hypothetical protein DESPIG_00012 [Desulfovibrio piger ATCC 29098]
gi|212674525|gb|EEB35008.1| RelA/SpoT family protein [Desulfovibrio piger ATCC 29098]
Length = 719
Score = 132 bits (332), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 92/141 (65%), Gaps = 13/141 (9%)
Query: 380 ALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGT 439
+L ++LL S G+E + R+K YSI+ KM+ + + + +++D A RV+V D
Sbjct: 218 SLIQDLLASN----GLEGQVYGRIKHKYSIYKKMQSQSLTLDEMHDIMAFRVLVKD---- 269
Query: 440 LHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRT 499
I+ CY++L +VH W P+ G F DYI PK +GYQSLHT V GP+G +E+QIRT
Sbjct: 270 -----IRDCYAVLGLVHSQWKPVHGRFKDYISMPKANGYQSLHTTVIGPEGERIEIQIRT 324
Query: 500 QKMHEYAEHGLAAHWLYKETG 520
++MH AEHG+AAHWLYKE G
Sbjct: 325 EEMHRQAEHGVAAHWLYKEKG 345
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 110/187 (58%), Gaps = 18/187 (9%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGIL 157
N E +QKA FA AH GQ R +G+PYL+H + LA + D TV AG+L
Sbjct: 19 NLELIQKAYVFAATAHAGQTRLSGEPYLSHPLAVAYTLADM-------GFDEPTVAAGLL 71
Query: 158 HDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYI---NQLLRRHRRINVNQGTLGHE-- 212
HD V+D ++ I+++FG++VA +V GV+++S I N+ + I + H+
Sbjct: 72 HDTVEDTGTTIEEIDDKFGEDVADIVDGVTKISMIVFENKEEAQAENIRKMILAMSHDMR 131
Query: 213 ----ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQ 268
+LADRLHNM T+ P K R +AQET+ I+ LA+RLGL+ LK +LEDL F L+
Sbjct: 132 VLMVKLADRLHNMSTLDFQKPHKQRRIAQETMDIYAPLANRLGLYLLKRQLEDLSFKYLR 191
Query: 269 PQIFRKM 275
P I+ ++
Sbjct: 192 PDIYNQI 198
>gi|21243840|ref|NP_643422.1| ATP:GTP 3'-pyrophosphotransferase [Xanthomonas axonopodis pv. citri
str. 306]
gi|21109438|gb|AAM37958.1| ATP:GTP 3'-pyrophosphotranferase [Xanthomonas axonopodis pv. citri
str. 306]
Length = 727
Score = 132 bits (332), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 375 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 432
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 220 VARERYLEAVKRTLSAALAQQGLRAEVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 279
Query: 433 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 492
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 280 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 330
Query: 493 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 331 IEIQIRTFEMHAQAELGVAAHWKYKEGGK 359
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR L + RA+AQ T I LA+RLG+W +K ELEDL F L+P+ +R
Sbjct: 150 LARQLARMRVADRLSEDERRALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPETYR 209
Query: 274 KM 275
++
Sbjct: 210 RI 211
>gi|398813763|ref|ZP_10572455.1| (p)ppGpp synthetase, RelA/SpoT family [Brevibacillus sp. BC25]
gi|398038063|gb|EJL31236.1| (p)ppGpp synthetase, RelA/SpoT family [Brevibacillus sp. BC25]
Length = 723
Score = 132 bits (332), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 65/131 (49%), Positives = 84/131 (64%), Gaps = 9/131 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
+E +S R K +YSIF KM R++ +++YD ALR++V D I+ CY++L
Sbjct: 229 NIEAEISGRPKHIYSIFKKMTRQNKQFNEIYDLLALRIIVND---------IRDCYAVLG 279
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW P+ G F DYI PK + YQSLHT V GP G LEVQIRT MH+ AE G+AAH
Sbjct: 280 IVHTLWKPMPGRFKDYIAMPKTNMYQSLHTTVIGPKGEPLEVQIRTWDMHQTAEIGIAAH 339
Query: 514 WLYKETGNKLQ 524
W YKE + +Q
Sbjct: 340 WAYKEGKSIVQ 350
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 102/181 (56%), Gaps = 14/181 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ +A A++AH GQ RK+G PY+ H I ILA L + T+ AG LHDVV+D
Sbjct: 24 ITRAYQLAEKAHEGQIRKSGVPYIMHPIAVAGILANLHMDAV-----TIAAGFLHDVVED 78
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRRINVNQGT---LGHEEL 214
+L + E+FG +VA LV GV++L I QL HR++ V + +L
Sbjct: 79 TEITLDHLREQFGPDVALLVDGVTKLEKIKYKSKEEQLAENHRKMLVAMAQDIRVIMIKL 138
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHNMRT+ + K R ++ ETL I+ LA RLG+ ++K ELED L PQ + +
Sbjct: 139 ADRLHNMRTLRHMSEEKQREISDETLEIFAPLAHRLGIASVKWELEDTALRYLNPQQYYR 198
Query: 275 M 275
+
Sbjct: 199 I 199
>gi|114320256|ref|YP_741939.1| (p)ppGpp synthetase I SpoT/RelA [Alkalilimnicola ehrlichii MLHE-1]
gi|114226650|gb|ABI56449.1| (p)ppGpp synthetase I, SpoT/RelA [Alkalilimnicola ehrlichii MLHE-1]
Length = 735
Score = 132 bits (332), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 65/129 (50%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K +YSI+ KM+RK + ++YD RALRV+V D + CY++L
Sbjct: 247 GIDAEVVGRPKHIYSIWRKMQRKGLRFEELYDLRALRVLVED---------VGTCYAVLG 297
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW I EFDDYI PK + Y+SLHTAV GP+G LEVQIRT MH+ AE G+AAH
Sbjct: 298 VVHSLWKHIPKEFDDYIATPKENNYRSLHTAVVGPEGKTLEVQIRTYAMHQEAELGIAAH 357
Query: 514 WLYKETGNK 522
W YKE G +
Sbjct: 358 WRYKEGGRQ 366
Score = 99.4 bits (246), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 97/178 (54%), Gaps = 24/178 (13%)
Query: 120 RKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDV--VDDACESLGSIEEEFGD 177
R TGD Y H + IL+ L + T+ AG+LHD+ +DD +LG I ++ GD
Sbjct: 52 RPTGDSYFEHGVAVATILSGLRLDAA-----TLAAGLLHDLPTLDDT--ALGRIRKQLGD 104
Query: 178 EVAKLVAGVSRLSYINQL---------------LRRHRRINVNQGTLGHEELADRLHNMR 222
+VA LVAG SR+ I++ LR+ + + LA+RLH++R
Sbjct: 105 DVAHLVAGASRMQDISRFHDPGQLSGESERAEGLRKMLLAMASDVRVVFITLAERLHDLR 164
Query: 223 TIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 280
+I LP + +AQET I+ LA+RLG+W LK ELEDL F LQP +++++ LA
Sbjct: 165 SIRDLPETLQQRIAQETRDIYAPLANRLGIWQLKWELEDLAFRYLQPDVYKQVAKLLA 222
>gi|294667037|ref|ZP_06732264.1| ATP:GTP 3-pyrophosphotransferase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292603194|gb|EFF46618.1| ATP:GTP 3-pyrophosphotransferase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 811
Score = 132 bits (332), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 375 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 432
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 304 VARERYLEAVKRTLSAALAQQGLRAEVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 363
Query: 433 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 492
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 364 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 414
Query: 493 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 415 IEIQIRTFEMHAQAELGVAAHWKYKEGGK 443
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR L + RA+AQ T I LA+RLG+W +K ELEDL F L+P+ +R
Sbjct: 234 LARQLARMRVADRLSEDERRALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPETYR 293
Query: 274 KM 275
++
Sbjct: 294 RI 295
>gi|410693584|ref|YP_003624205.1| putative (P)ppGpp synthetase I, SpoT/RelA [Thiomonas sp. 3As]
gi|294340008|emb|CAZ88372.1| putative (P)ppGpp synthetase I, SpoT/RelA [Thiomonas sp. 3As]
Length = 738
Score = 132 bits (332), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 61/121 (50%), Positives = 77/121 (63%), Gaps = 9/121 (7%)
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI+ KM+ K + +V D RALR++VGD + CY+ L +VH +W
Sbjct: 243 RPKHIYSIWRKMQGKHLQFEQVMDLRALRIIVGD---------VSACYAALSVVHAMWAA 293
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ GEFDDYI PKP+GYQSLHT V+ G E+QIRT MH +AE G AAHW YKE G
Sbjct: 294 LPGEFDDYIAKPKPNGYQSLHTVVRTDSGQIFEIQIRTAAMHAHAEQGSAAHWAYKEAGA 353
Query: 522 K 522
K
Sbjct: 354 K 354
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 97/218 (44%), Gaps = 29/218 (13%)
Query: 101 DEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDV 160
D+++ +A A+A +TG+P + H IL + D A L+ V
Sbjct: 19 DQRIDQARAYALALIDTVVLETGEPAVEHADGVSAILREI-----GADADAQAAAYLNLV 73
Query: 161 VDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN----------QLLRRHRRINVNQGTLG 210
V + + FG+ +A L +L ++ +L RRH + V + LG
Sbjct: 74 VPQLAHPQDQLSKHFGEALAALSVETRKLVEVSRMARGGPDEAELRRRHTEL-VRRLLLG 132
Query: 211 HEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 262
LA RL ++R A A E++ ++ LA+RLG+W +K E+EDL
Sbjct: 133 FSRDLRVALLRLASRLQSLRYFTRTKQAAPAAFLAESMEVYAPLANRLGIWQVKWEMEDL 192
Query: 263 CFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVS 300
F ++QP++++ D+A R R+ + I+T +S
Sbjct: 193 SFRLMQPEVYK----DIARKLDER-RIEREQGISTAIS 225
>gi|381150377|ref|ZP_09862246.1| (p)ppGpp synthetase, RelA/SpoT family [Methylomicrobium album BG8]
gi|380882349|gb|EIC28226.1| (p)ppGpp synthetase, RelA/SpoT family [Methylomicrobium album BG8]
Length = 704
Score = 132 bits (332), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 115/204 (56%), Gaps = 20/204 (9%)
Query: 392 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 451
+ G+ + R K +YSI+ KM+RK + I +YD A+RV+V + + CY++
Sbjct: 225 LEGITAEVYGRPKHIYSIWKKMQRKQLDIEDLYDLLAVRVIVTN---------LTQCYTV 275
Query: 452 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 511
L +VH LW I EFDDYI NPK +GYQSLHT + +G+ +EVQIRT++MHE+AE G+A
Sbjct: 276 LGLVHSLWQTIPKEFDDYIANPKENGYQSLHTVIVDNEGNRIEVQIRTREMHEFAEMGVA 335
Query: 512 AHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPL----DTDLFQK--YSSLKMGH 565
AHW YKE G ++ E +I + L ++ D+ L T+LF Y G
Sbjct: 336 AHWSYKEGGRHNAAV----EKNIASLRKLLEEKDNDETLAEDFKTELFSDRVYVLTPAGK 391
Query: 566 PVIRVEGSNLLA-AVIIRVEKGGR 588
+ V+GS L A I E G R
Sbjct: 392 LIDLVKGSTPLDFAYAIHTEIGHR 415
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 13/153 (8%)
Query: 149 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLS----YINQLLRRHRRINV 204
+ T +A IL D + I FG+ V LV V+ L+ Y ++ + +
Sbjct: 58 LKTTLAAILSDPRLSTLDPQPDIAGLFGETVDSLVKDVNWLNKLSVYTPEMTHQPNQTET 117
Query: 205 NQGTL---GHE------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 255
+ L H+ +LA R+ +R++ P +A+ETL I+ LA+R+G+
Sbjct: 118 LRRMLLSMTHDVRAVLIKLAYRIKRLRSLAGEPEEVRHFIARETLDIYAPLANRMGIHQF 177
Query: 256 KAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 288
K ELED+ F L+P +++ + LA + R R
Sbjct: 178 KWELEDMAFRYLEPLVYKSIAKSLADKRTERER 210
>gi|337285951|ref|YP_004625424.1| (p)ppGpp synthetase I SpoT/RelA [Thermodesulfatator indicus DSM
15286]
gi|335358779|gb|AEH44460.1| (p)ppGpp synthetase I, SpoT/RelA [Thermodesulfatator indicus DSM
15286]
Length = 727
Score = 132 bits (332), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 117/193 (60%), Gaps = 14/193 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA +AH GQ R++G+PYL H + ILA + K + T+ AG+LHD V+D
Sbjct: 28 VEKAYVFAAKAHAGQVRRSGEPYLAHPLSVAYILARM-----KLDLPTIAAGLLHDTVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLGHEE--------L 214
++ I++ FG VA++V GV+++++++ + H++ N + L E L
Sbjct: 83 TDVTIEDIKKHFGPVVAEIVDGVTKIAHLSARSKVHKQAENFRKMLLAMAEDLRVILVKL 142
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHNM+T+ +P K + +AQETL I+ LASRLG+ LK ELEDL F L P+ ++
Sbjct: 143 ADRLHNMKTLEFMPDHKRKRIAQETLDIYAPLASRLGIDWLKQELEDLSFMYLYPEEYKT 202
Query: 275 MRADLASMWSPRN 287
+R ++ + + R
Sbjct: 203 LREEVEKVVAARQ 215
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 79/128 (61%), Gaps = 12/128 (9%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHK---VYDARALRVVVGDKNGTLHGPAIQCCYS 450
G+E + R K LYSIF K++R ++ I + +YD LRV+V ++ CY
Sbjct: 233 GIEAKVLGRRKHLYSIFRKLQRNNLAIDQLYLIYDIIGLRVIVK---------KVKECYE 283
Query: 451 LLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGL 510
+L I+H LW PI G F DYI PK + YQSLHT V GP G +E+QIRT++M A G+
Sbjct: 284 VLGIIHSLWKPIPGRFKDYINLPKANMYQSLHTTVIGPGGRQMEIQIRTEEMDRVANEGI 343
Query: 511 AAHWLYKE 518
AAH+LYKE
Sbjct: 344 AAHFLYKE 351
>gi|226311469|ref|YP_002771363.1| GTP pyrophosphokinase [Brevibacillus brevis NBRC 100599]
gi|226094417|dbj|BAH42859.1| GTP pyrophosphokinase [Brevibacillus brevis NBRC 100599]
Length = 723
Score = 132 bits (332), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 65/131 (49%), Positives = 84/131 (64%), Gaps = 9/131 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
+E +S R K +YSIF KM R++ +++YD ALR++V D I+ CY++L
Sbjct: 229 NIEAEISGRPKHIYSIFKKMTRQNKQFNEIYDLLALRIIVND---------IRDCYAVLG 279
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW P+ G F DYI PK + YQSLHT V GP G LEVQIRT MH+ AE G+AAH
Sbjct: 280 IVHTLWKPMPGRFKDYIAMPKTNMYQSLHTTVIGPKGEPLEVQIRTWDMHQTAEIGIAAH 339
Query: 514 WLYKETGNKLQ 524
W YKE + +Q
Sbjct: 340 WAYKEGKSIVQ 350
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 102/181 (56%), Gaps = 14/181 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ +A A++AH GQ RK+G PY+ H I ILA L + T+ AG LHDVV+D
Sbjct: 24 ITRAYQLAEKAHEGQIRKSGVPYIMHPIAVAGILANLHMDAV-----TIAAGFLHDVVED 78
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRRINVNQGT---LGHEEL 214
+L + E+FG +VA LV GV++L I QL HR++ V + +L
Sbjct: 79 TEITLDHLREQFGPDVALLVDGVTKLEKIKYKSKEEQLAENHRKMLVAMAQDIRVIMIKL 138
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHNMRT+ + K R ++ ETL I+ LA RLG+ ++K ELED L PQ + +
Sbjct: 139 ADRLHNMRTLRHMSEEKQREISDETLEIFAPLAHRLGIASVKWELEDTALRYLNPQQYYR 198
Query: 275 M 275
+
Sbjct: 199 I 199
>gi|294626832|ref|ZP_06705424.1| Guanosine 3,5-bis-pyrophosphate synthetase [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 11122]
gi|292598846|gb|EFF42991.1| Guanosine 3,5-bis-pyrophosphate synthetase [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 11122]
Length = 719
Score = 132 bits (332), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 375 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 432
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 212 VARERYLEAVKRTLSAALAQQGLRAEVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 271
Query: 433 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 492
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 272 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 322
Query: 493 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 323 IEIQIRTFEMHAQAELGVAAHWKYKEGGK 351
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR L + RA+AQ T I LA+RLG+W +K ELEDL F L+P+ +R
Sbjct: 142 LARQLARMRVADRLSEDERRALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPETYR 201
Query: 274 KM 275
++
Sbjct: 202 RI 203
>gi|408356412|ref|YP_006844943.1| GTP pyrophosphokinase [Amphibacillus xylanus NBRC 15112]
gi|407727183|dbj|BAM47181.1| GTP pyrophosphokinase [Amphibacillus xylanus NBRC 15112]
Length = 729
Score = 132 bits (331), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 116/197 (58%), Gaps = 15/197 (7%)
Query: 89 DGVDVTGYPIFND-EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKR 147
D +++ Y +D + +++A +A +AH Q+R++G+PY+ H + ILA L G
Sbjct: 11 DVIEIASYLSDDDIKLIRRAFEYAYKAHENQYRRSGEPYIIHPVQVASILAKL----GLD 66
Query: 148 AVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRR 201
A +T+ G LHDVV+D ++L IEE F +E+A LV GV++L I Q HR+
Sbjct: 67 A-ETIAGGFLHDVVEDTDKTLKDIEEAFNEEIAMLVDGVTKLGKIQYKSQEAQQAENHRK 125
Query: 202 INVNQGT---LGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 258
+ + + +LADR+HNMRT+ LPP K R +A ETL I+ LA RLG+ A+K E
Sbjct: 126 MFIAMSKDIRVILIKLADRVHNMRTLKYLPPEKQRRIANETLEIFAPLAHRLGISAIKWE 185
Query: 259 LEDLCFAVLQPQIFRKM 275
LED+ L PQ + ++
Sbjct: 186 LEDVALRYLNPQQYYRI 202
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 80/120 (66%), Gaps = 9/120 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
S R K +YSI+ KM ++ ++YD A+R++V +I+ CY++L I+H
Sbjct: 237 FSGRPKHIYSIYRKMMLQNKQFDEIYDLLAVRIIVN---------SIKDCYAVLGIIHTC 287
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W P+ G F DYI PKP+ YQSLHT V GP G+ LEVQIRT++MHE AE+G+AAHW YKE
Sbjct: 288 WKPMPGRFKDYIAMPKPNLYQSLHTTVIGPKGAPLEVQIRTKEMHEIAEYGIAAHWAYKE 347
>gi|381169784|ref|ZP_09878947.1| RelA/SpoT family protein [Xanthomonas citri pv. mangiferaeindicae
LMG 941]
gi|380689802|emb|CCG35434.1| RelA/SpoT family protein [Xanthomonas citri pv. mangiferaeindicae
LMG 941]
Length = 719
Score = 132 bits (331), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 375 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 432
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 212 VARERYLEAVKRTLSAALAQQGLRAEVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 271
Query: 433 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 492
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 272 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 322
Query: 493 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 323 IEIQIRTFEMHAQAELGVAAHWKYKEGGK 351
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR L + RA+AQ T I LA+RLG+W +K ELEDL F L+P+ +R
Sbjct: 142 LARQLARMRVADRLSEDERRALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPETYR 201
Query: 274 KM 275
++
Sbjct: 202 RI 203
>gi|346725914|ref|YP_004852583.1| Guanosine polyphosphate pyrophosphohydrolase [Xanthomonas
axonopodis pv. citrumelo F1]
gi|346650661|gb|AEO43285.1| Guanosine polyphosphate pyrophosphohydrolase [Xanthomonas
axonopodis pv. citrumelo F1]
Length = 728
Score = 132 bits (331), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 375 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 432
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 221 VARERYLEAVKRTLSAALAQQGLRAEVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 280
Query: 433 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 492
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 281 VED---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 331
Query: 493 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 332 IEIQIRTFEMHAQAELGVAAHWKYKEGGK 360
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR L + RA+AQ T I LA+RLG+W +K ELEDL F L+P+ +R
Sbjct: 151 LARQLARMRVADRLSEDERRALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPETYR 210
Query: 274 KM 275
++
Sbjct: 211 RI 212
>gi|366085882|ref|ZP_09452367.1| GTP pyrophosphokinase [Lactobacillus zeae KCTC 3804]
Length = 741
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 110/192 (57%), Gaps = 14/192 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA H Q RK+G+PY+ H I ILA L K +TV +G LHDVV+D
Sbjct: 28 VEKAYKFAAYVHKDQVRKSGEPYIIHPIQVAGILAEL-----KMDPETVASGYLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYI------NQLLRRHRRINVNQGT---LGHEEL 214
+LG IEE FG +VA +V GV++LS + ++L HR++ + + +L
Sbjct: 83 TNITLGDIEEVFGHDVAVIVDGVTKLSKVTYVAHKDELAENHRKMLLAMAKDLRVIMVKL 142
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHNMRT+ L P K R +A ETL I+ LA RLG+ +K ELEDL L PQ + +
Sbjct: 143 ADRLHNMRTLQHLRPDKQRRIANETLEIYAPLADRLGISTIKWELEDLSLRYLNPQQYYR 202
Query: 275 MRADLASMWSPR 286
+ + S + R
Sbjct: 203 IAHLMNSKRTER 214
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 74/120 (61%), Gaps = 9/120 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+ R K +YSI+ KMR K ++YD A+RV+ I+ CY++L +H
Sbjct: 238 IYGRPKHIYSIYKKMRDKHKQFDELYDLLAIRVIT---------ETIKDCYAVLGAIHTK 288
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W P+ G F DYI PK + YQS+HT V GP G LEVQIRT++MH AE+G+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKANLYQSIHTTVIGPMGKPLEVQIRTEEMHHVAEYGVAAHWAYKE 348
>gi|325927559|ref|ZP_08188794.1| (p)ppGpp synthetase, RelA/SpoT family [Xanthomonas perforans
91-118]
gi|325542064|gb|EGD13571.1| (p)ppGpp synthetase, RelA/SpoT family [Xanthomonas perforans
91-118]
Length = 728
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 375 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 432
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 221 VARERYLEAVKRTLSAALAQQGLRAEVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 280
Query: 433 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 492
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 281 VED---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 331
Query: 493 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 332 IEIQIRTFEMHAQAELGVAAHWKYKEGGK 360
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR L + RA+AQ T I LA+RLG+W +K ELEDL F L+P+ +R
Sbjct: 151 LARQLARMRVADRLSEDERRALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPETYR 210
Query: 274 KM 275
++
Sbjct: 211 RI 212
>gi|307610160|emb|CBW99708.1| GTP pyrophosphokinase [Legionella pneumophila 130b]
Length = 734
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/117 (52%), Positives = 82/117 (70%), Gaps = 9/117 (7%)
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K ++SI+ KM+RK+V + ++YDA A+R+++ + CY +L +VH LW
Sbjct: 257 RSKHIHSIYKKMKRKNVSLDEIYDATAVRILLDTE---------AQCYEVLGMVHTLWKQ 307
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
I EFDDYI+NPK +GYQSLHTAV+GP+G EVQIRT MH+ AE G+AAHW YKE
Sbjct: 308 IPAEFDDYIINPKSNGYQSLHTAVEGPEGRVFEVQIRTFHMHDLAEMGVAAHWKYKE 364
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 97/202 (48%), Gaps = 21/202 (10%)
Query: 95 GYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVA 154
GY + N E V+ A ++ A +TG L + +LA L +T+ A
Sbjct: 29 GY-LDNLELVRAACTLSQLAGQDHATETGQTCLQQGLSMADLLADLEVDQ-----ETLAA 82
Query: 155 GILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN--QLLRRHRRI-----NVNQG 207
I+ + V A S+ +EE+ G +AKLV G+ ++S +N Q L ++ + N+ +
Sbjct: 83 AIIFENVHYADLSIDDVEEQLGHNIAKLVKGIEKMSAMNNFQALNKYPQNKNQIDNIRKM 142
Query: 208 TLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAEL 259
L + LA+ L +RT L + +A E + I+ LA+RLG+ A+K E+
Sbjct: 143 LLAMVDDVRVVLIKLAECLCILRTAGHLSETVRKQLATEAMEIYAPLANRLGIGAIKWEM 202
Query: 260 EDLCFAVLQPQIFRKMRADLAS 281
EDL F L P+ ++ + L +
Sbjct: 203 EDLAFRHLHPEEYKAIAKGLKA 224
>gi|199599338|ref|ZP_03212736.1| Guanosine polyphosphate pyrophosphohydrolase/synthetase
[Lactobacillus rhamnosus HN001]
gi|258508564|ref|YP_003171315.1| GTP pyrophosphokinase [Lactobacillus rhamnosus GG]
gi|385828226|ref|YP_005865998.1| GTP pyrophosphokinase [Lactobacillus rhamnosus GG]
gi|385835394|ref|YP_005873168.1| relA/SpoT family protein [Lactobacillus rhamnosus ATCC 8530]
gi|421768716|ref|ZP_16205426.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [Lactobacillus
rhamnosus LRHMDP2]
gi|421771132|ref|ZP_16207793.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [Lactobacillus
rhamnosus LRHMDP3]
gi|199589777|gb|EDY97885.1| Guanosine polyphosphate pyrophosphohydrolase/synthetase
[Lactobacillus rhamnosus HN001]
gi|257148491|emb|CAR87464.1| GTP pyrophosphokinase [Lactobacillus rhamnosus GG]
gi|259649871|dbj|BAI42033.1| GTP pyrophosphokinase [Lactobacillus rhamnosus GG]
gi|355394885|gb|AER64315.1| relA/SpoT family protein [Lactobacillus rhamnosus ATCC 8530]
gi|411185565|gb|EKS52692.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [Lactobacillus
rhamnosus LRHMDP2]
gi|411186567|gb|EKS53691.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [Lactobacillus
rhamnosus LRHMDP3]
Length = 741
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 110/192 (57%), Gaps = 14/192 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA H Q RK+G+PY+ H I ILA L K +TV +G LHDVV+D
Sbjct: 28 VEKAYKFAAYVHKDQVRKSGEPYIIHPIQVAGILAEL-----KMDPETVASGYLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYI------NQLLRRHRRINVNQGT---LGHEEL 214
+LG IEE FG +VA +V GV++LS + ++L HR++ + + +L
Sbjct: 83 TNITLGDIEEVFGHDVAVIVDGVTKLSKVTYVAHKDELAENHRKMLLAMAKDLRVIMVKL 142
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHNMRT+ L P K R +A ETL I+ LA RLG+ +K ELEDL L PQ + +
Sbjct: 143 ADRLHNMRTLQHLRPDKQRRIANETLEIYAPLADRLGISTIKWELEDLSLRYLNPQQYYR 202
Query: 275 MRADLASMWSPR 286
+ + S + R
Sbjct: 203 IAHLMNSKRTER 214
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 74/120 (61%), Gaps = 9/120 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+ R K +YSI+ KMR K ++YD A+RV+ I+ CY++L +H
Sbjct: 238 IYGRPKHIYSIYKKMRDKHKQFDELYDLLAIRVIT---------ETIKDCYAVLGAIHTK 288
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W P+ G F DYI PK + YQS+HT V GP G LEVQIRT++MH AE+G+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKANLYQSIHTTVIGPMGKPLEVQIRTEEMHHVAEYGVAAHWAYKE 348
>gi|325294217|ref|YP_004280731.1| (p)ppGpp synthetase I SpoT/RelA [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325064665|gb|ADY72672.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 716
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 110/191 (57%), Gaps = 24/191 (12%)
Query: 99 FNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILH 158
F++E + KA FAK H GQFRK+G+P+ +H ILA L + T+++G+LH
Sbjct: 18 FDEELIIKAYNFAKERHEGQFRKSGEPFFSHPAEVAYILAEL-----RMDTPTIISGLLH 72
Query: 159 DVVDDACESLGSIEEEFGDEVAKLVAGVSRL--------------SYINQLLRRHRRINV 204
DVV+D ++ IE+EFG EVA +V GV++L S+ N L+ I V
Sbjct: 73 DVVEDTDTTIEEIEKEFGKEVAFIVKGVTKLEGYQFSSKEERDAESFRNLLISLAEDIRV 132
Query: 205 NQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 264
+LADRLHNMRT+ ++ P + A+ETL I+ LA+RLG++ +K ELEDL
Sbjct: 133 LIV-----KLADRLHNMRTMESMKPESQKRNAKETLTIYAPLANRLGMYRIKNELEDLSL 187
Query: 265 AVLQPQIFRKM 275
L P+ + ++
Sbjct: 188 KYLDPETYNEL 198
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 77/130 (59%), Gaps = 9/130 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R+K +Y I+ KM K + +VYD +RV+ + CY +L
Sbjct: 228 GLKGDIQWRVKHIYGIYRKMVTKGIPFEEVYDVAGIRVITD---------TVGACYQILG 278
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
I+H +WIP+ G DYI PKP+ YQSLHT V GP G +E QIRT +MH+ AE G+AAH
Sbjct: 279 IIHSIWIPVPGRIKDYIATPKPNMYQSLHTTVVGPKGQFIEFQIRTYEMHQVAEMGIAAH 338
Query: 514 WLYKETGNKL 523
W YKE G L
Sbjct: 339 WKYKEGGGAL 348
>gi|163847013|ref|YP_001635057.1| RelA/SpoT family protein [Chloroflexus aurantiacus J-10-fl]
gi|163668302|gb|ABY34668.1| RelA/SpoT family protein [Chloroflexus aurantiacus J-10-fl]
Length = 788
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 116/195 (59%), Gaps = 14/195 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++++ AFA AH GQ R++G PY+ H I IL L + +++ A +LHDVV+D
Sbjct: 91 IRRSYAFAAVAHEGQRRQSGQPYIDHPIEVAIILLDL-----RLDTESIAAALLHDVVED 145
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRR------HRRI---NVNQGTLGHEEL 214
+ + IE+ FG +VA LV GV++LS + +R++ + + + +L
Sbjct: 146 SGVPISVIEQFFGQQVASLVDGVTKLSGYESKSKEEAQAGTYRKLIIASADDPRVVLIKL 205
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHNMRTI+A PP K + VA+ETL I+ LA RLG+W +K+ELEDL F L P +++
Sbjct: 206 ADRLHNMRTIHATPPQKQQRVARETLEIYAPLAHRLGMWQMKSELEDLAFKTLHPDRYQE 265
Query: 275 MRADLASMWSPRNRV 289
+ LA R+R+
Sbjct: 266 IARGLAMRKEARDRI 280
Score = 125 bits (315), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 82/130 (63%), Gaps = 7/130 (5%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ ++ R K +YSI+ KM RK V + ++YD A+R++V D N + CY L
Sbjct: 296 GIKAEVTGRSKHIYSIWRKMERKGVPLERIYDQLAVRIIVDDPNNE-----VGACYQALG 350
Query: 454 IVH--RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 511
+VH W P+ EFDDYI PK S Y+S+HT V P+G EVQIR+ KMHE AEHG+A
Sbjct: 351 VVHGKMNWTPVMQEFDDYIAAPKESSYRSIHTTVILPEGLHCEVQIRSTKMHEEAEHGIA 410
Query: 512 AHWLYKETGN 521
AHW YKE N
Sbjct: 411 AHWRYKEGFN 420
>gi|78048800|ref|YP_364975.1| guanosine 3',5'-bis-pyrophosphate synthetase [Xanthomonas
campestris pv. vesicatoria str. 85-10]
gi|78037230|emb|CAJ24975.1| Guanosine 3',5'-bis-pyrophosphate synthetase [Xanthomonas
campestris pv. vesicatoria str. 85-10]
Length = 723
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 375 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 432
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 216 VARERYLEAVKRTLSAALAQQGLRAEVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 275
Query: 433 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 492
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 276 VED---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 326
Query: 493 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 327 IEIQIRTFEMHAQAELGVAAHWKYKEGGK 355
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR L + RA+AQ T I LA+RLG+W +K ELEDL F L+P+ +R
Sbjct: 146 LARQLARMRVADRLSEDERRALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPETYR 205
Query: 274 KM 275
++
Sbjct: 206 RI 207
>gi|29654672|ref|NP_820364.1| RelA/SpoT family protein [Coxiella burnetii RSA 493]
gi|161831132|ref|YP_001597218.1| RelA/SpoT family protein [Coxiella burnetii RSA 331]
gi|29541940|gb|AAO90878.1| GTP pyrophosphokinase [Coxiella burnetii RSA 493]
gi|161762999|gb|ABX78641.1| RelA/SpoT family protein [Coxiella burnetii RSA 331]
Length = 714
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 86/128 (67%), Gaps = 10/128 (7%)
Query: 398 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 457
+S R K +YSIF K++RK V ++YD A+R++V +++ CY+ L IVH
Sbjct: 238 NISGRAKHIYSIFRKIQRKQVDFSEIYDTSAVRILVS---------SLEDCYTALSIVHA 288
Query: 458 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 517
LW PI EFDDYI PK +GY+S+HTAV GP+G +E+QIRT MHE AE G+AAHW YK
Sbjct: 289 LWEPIAKEFDDYIAKPKDNGYRSIHTAVIGPEGHNIEIQIRTYGMHEEAELGVAAHWKYK 348
Query: 518 ETGNKLQS 525
E G K+ S
Sbjct: 349 E-GKKVAS 355
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 67/139 (48%), Gaps = 16/139 (11%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
+T+ A +L+ V + S ++ ++ G VAKL+ G R+ I+ +L R + Q +
Sbjct: 62 ETLAAALLYPTVTQSGISQEALTDQIGKSVAKLLMGTKRMETIDDMLIRSSGFSQQQNFV 121
Query: 210 GHE----------------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 253
+ +L++RL +R P ++ + +AQ+ + ++ LA+RLG+
Sbjct: 122 DNLRKMLLAMVDDVRIVLIKLSERLTTLRYSRHQPISEQKDIAQKIMDLYAPLANRLGVG 181
Query: 254 ALKAELEDLCFAVLQPQIF 272
K ++ED F L P +
Sbjct: 182 QFKWQMEDWAFRYLNPNEY 200
Score = 39.3 bits (90), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 18/100 (18%)
Query: 718 KVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGST 777
K+ LR ++ W++++ + RQ + + + V PNG+++ L +G+T
Sbjct: 360 KINWLREVMDWQKEVSPDVKWRQ--------------IFEDHIYVFTPNGDVIDLEAGAT 405
Query: 778 AADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
D A + +G + VNG++V LK GD VE+
Sbjct: 406 PLDFAYRIHTEIGHRCRGARVNGKMVPLTRTLKTGDCVEI 445
>gi|222524836|ref|YP_002569307.1| (p)ppGpp synthetase I SpoT/RelA [Chloroflexus sp. Y-400-fl]
gi|222448715|gb|ACM52981.1| (p)ppGpp synthetase I, SpoT/RelA [Chloroflexus sp. Y-400-fl]
Length = 788
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 116/195 (59%), Gaps = 14/195 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++++ AFA AH GQ R++G PY+ H I IL L + +++ A +LHDVV+D
Sbjct: 91 IRRSYAFAAVAHEGQRRQSGQPYIDHPIEVAIILLDL-----RLDTESIAAALLHDVVED 145
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRR------HRRI---NVNQGTLGHEEL 214
+ + IE+ FG +VA LV GV++LS + +R++ + + + +L
Sbjct: 146 SGVPISVIEQFFGQQVASLVDGVTKLSGYESKSKEEAQAGTYRKLIIASADDPRVVLIKL 205
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHNMRTI+A PP K + VA+ETL I+ LA RLG+W +K+ELEDL F L P +++
Sbjct: 206 ADRLHNMRTIHATPPQKQQRVARETLEIYAPLAHRLGMWQMKSELEDLAFKTLHPDRYQE 265
Query: 275 MRADLASMWSPRNRV 289
+ LA R+R+
Sbjct: 266 IARGLAMRKEARDRI 280
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 82/130 (63%), Gaps = 7/130 (5%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ ++ R K +YSI+ KM RK V + ++YD A+R++V D N + CY L
Sbjct: 296 GIKAEVTGRSKHIYSIWRKMERKGVPLERIYDQLAVRIIVDDPNNE-----VGACYQALC 350
Query: 454 IVH--RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 511
+VH W P+ EFDDYI PK S Y+S+HT V P+G EVQIR+ KMHE AEHG+A
Sbjct: 351 VVHGKMNWTPVMQEFDDYIAAPKESSYRSIHTTVILPEGLHCEVQIRSTKMHEEAEHGIA 410
Query: 512 AHWLYKETGN 521
AHW YKE N
Sbjct: 411 AHWRYKEGFN 420
>gi|421144446|ref|ZP_15604359.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Fusobacterium nucleatum subsp. fusiforme ATCC 51190]
gi|395489103|gb|EJG09945.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Fusobacterium nucleatum subsp. fusiforme ATCC 51190]
Length = 724
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 109/183 (59%), Gaps = 14/183 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
++++ A+ FA+ +H GQ+RK+GD Y+ H + +IL + K DT+VAG+LHDVV
Sbjct: 21 DKIKLALGFAEESHQGQYRKSGDDYIVHPVEVAKILMDM-----KMDTDTIVAGLLHDVV 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE-------- 213
+D + I+ FGD VA LV GV++L + + N+ + L E
Sbjct: 76 EDTLIPIADIKYNFGDTVATLVDGVTKLKALPNGTKNQAE-NIRKMILAMAENIRVILIK 134
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LADRLHNMRT+ + P K +++++ETL I+ LA RLG+ +K+ELEDL F+ L F
Sbjct: 135 LADRLHNMRTLKFMKPEKQQSISKETLDIYAPLAHRLGMAKVKSELEDLAFSYLHHDEFL 194
Query: 274 KMR 276
+++
Sbjct: 195 EIK 197
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 73/126 (57%), Gaps = 9/126 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K YSI+ KM +K +YD +RV+V DK CY +L
Sbjct: 226 GIKAEVKGRFKHFYSIYKKMYQKGKEFDDIYDLMGVRVIVDDK---------ATCYHVLG 276
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH + P+ G F DYI PK + YQS+HT + GP G +E+QIRT+ M E AE G+AAH
Sbjct: 277 IVHSQYTPVPGRFKDYIAVPKSNNYQSIHTTIVGPLGKFIEIQIRTKDMDEIAEEGIAAH 336
Query: 514 WLYKET 519
W YKE
Sbjct: 337 WNYKEN 342
>gi|256845985|ref|ZP_05551443.1| GTP pyrophosphokinase [Fusobacterium sp. 3_1_36A2]
gi|256719544|gb|EEU33099.1| GTP pyrophosphokinase [Fusobacterium sp. 3_1_36A2]
Length = 724
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 109/183 (59%), Gaps = 14/183 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
++++ A+ FA+ +H GQ+RK+GD Y+ H + +IL + K DT+VAG+LHDVV
Sbjct: 21 DKIKLALGFAEESHQGQYRKSGDDYIVHPVEVAKILMDM-----KMDTDTIVAGLLHDVV 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE-------- 213
+D + I+ FGD VA LV GV++L + + N+ + L E
Sbjct: 76 EDTLIPIADIKYNFGDTVATLVDGVTKLKALPNGTKNQAE-NIRKMILAMAENIRVILIK 134
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LADRLHNMRT+ + P K +++++ETL I+ LA RLG+ +K+ELEDL F+ L F
Sbjct: 135 LADRLHNMRTLKFMKPEKQQSISKETLDIYAPLAHRLGMAKVKSELEDLAFSYLHHDEFL 194
Query: 274 KMR 276
+++
Sbjct: 195 EIK 197
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 73/126 (57%), Gaps = 9/126 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K YSI+ KM +K +YD +RV+V DK CY +L
Sbjct: 226 GIKAEVKGRFKHFYSIYKKMYQKGKEFDDIYDLMGVRVIVDDK---------ATCYHVLG 276
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH + P+ G F DYI PK + YQS+HT + GP G +E+QIRT+ M + AE G+AAH
Sbjct: 277 IVHSQYTPVPGRFKDYIAVPKSNNYQSIHTTIVGPLGKFIEIQIRTKDMDKIAEEGIAAH 336
Query: 514 WLYKET 519
W YKE
Sbjct: 337 WNYKEN 342
>gi|344340006|ref|ZP_08770933.1| (p)ppGpp synthetase I, SpoT/RelA [Thiocapsa marina 5811]
gi|343800185|gb|EGV18132.1| (p)ppGpp synthetase I, SpoT/RelA [Thiocapsa marina 5811]
Length = 737
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/126 (50%), Positives = 88/126 (69%), Gaps = 9/126 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+E ++ R K +YSI+ KM+RK+V I +++D RA+R++VG ++ CY+ L
Sbjct: 249 GIEAEITGRPKHIYSIWRKMQRKEVEIAEIFDLRAVRILVG---------SVADCYAALG 299
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW I EFDDYI PK + Y+SLHTAV GP+ LEVQIRT +MH++AE G+AAH
Sbjct: 300 LVHGLWKHIPKEFDDYIATPKGNMYRSLHTAVVGPEDKPLEVQIRTHEMHQHAEFGVAAH 359
Query: 514 WLYKET 519
W YKE+
Sbjct: 360 WAYKES 365
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 105/214 (49%), Gaps = 21/214 (9%)
Query: 88 VDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKR 147
+DG+ + YP +Q+ A A R + +TG+ ++ H + T IL L +
Sbjct: 23 LDGL-ASHYPTDELKQIAGACAALTRCRGDRRIETGETHVRHVLSTADILVRL-----RM 76
Query: 148 AVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLL-------RRHR 200
+T++A +L+ +D + +E+ FG +A++V +SR+ I + +
Sbjct: 77 DFETLIAALLNGCLDQGDLTEAQLEDRFGPGIARMVGDLSRIGQIANIDAIIAAKDQDEH 136
Query: 201 RINVNQGTLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
N+ + LG E LA+R+H MR I L P + +A++T I+ LA+RLG+
Sbjct: 137 EENLRRLLLGIAEDVRVVLVVLAERVHLMRAIKDLEPERRAKIARDTQRIYAPLANRLGI 196
Query: 253 WALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 286
W +K ELEDL L P+ ++++ LA R
Sbjct: 197 WQVKWELEDLSLRYLNPEEYKRIAKLLAERREER 230
>gi|218246275|ref|YP_002371646.1| (p)ppGpp synthetase I SpoT/RelA [Cyanothece sp. PCC 8801]
gi|257059322|ref|YP_003137210.1| (p)ppGpp synthetase I SpoT/RelA [Cyanothece sp. PCC 8802]
gi|218166753|gb|ACK65490.1| (p)ppGpp synthetase I, SpoT/RelA [Cyanothece sp. PCC 8801]
gi|256589488|gb|ACV00375.1| (p)ppGpp synthetase I, SpoT/RelA [Cyanothece sp. PCC 8802]
Length = 743
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/190 (41%), Positives = 112/190 (58%), Gaps = 14/190 (7%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A FA + H GQ+RK+G+PY+ H I +L L G +A+ + AG LHDVV+D
Sbjct: 41 RAFNFAYQLHEGQYRKSGEPYIAHPIAVAGLLRDL---GGDKAM--IAAGFLHDVVEDTD 95
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLR-RHRRINVNQGTLGHEE--------LAD 216
++ IEE FG EV +LV GV++LS N + H+ N + L + LAD
Sbjct: 96 VTVEQIEENFGSEVRQLVEGVTKLSKFNFSSKTEHQAENFRRMFLAMAKDIRVIVVKLAD 155
Query: 217 RLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 276
RLHNMRT+ L P K +A+ET I+ LA+RLG+W K ELEDL F L+P+ +R+++
Sbjct: 156 RLHNMRTLEHLKPEKQERIARETKEIFAPLANRLGIWRFKWELEDLSFKYLEPEAYREIQ 215
Query: 277 ADLASMWSPR 286
+ +A S R
Sbjct: 216 SLVAEKRSDR 225
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 78/124 (62%), Gaps = 9/124 (7%)
Query: 397 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 456
V L R K LY I+ KM+R+ G +++YD ALR++V + + CY L +VH
Sbjct: 248 VELQGRPKHLYGIYHKMQRQQKGFNQIYDIAALRIIVKNN---------EDCYRALAVVH 298
Query: 457 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 516
+ PI G F DYI PKP+ YQSLHT V G G LEVQIRT +MH AE+G+AAHW Y
Sbjct: 299 DAFKPIPGRFKDYIGLPKPNRYQSLHTTVVGLTGRPLEVQIRTLEMHHIAEYGIAAHWKY 358
Query: 517 KETG 520
KETG
Sbjct: 359 KETG 362
>gi|217967359|ref|YP_002352865.1| (p)ppGpp synthetase I SpoT/RelA [Dictyoglomus turgidum DSM 6724]
gi|217336458|gb|ACK42251.1| (p)ppGpp synthetase I, SpoT/RelA [Dictyoglomus turgidum DSM 6724]
Length = 727
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 95/167 (56%), Gaps = 12/167 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ ++ R K LYSI+ KM R+ + I ++YD +RV+V + + CY +L
Sbjct: 229 GINAEVTGRAKHLYSIYQKMLRRGIEIEEMYDLLGVRVIVNSE---------KECYEVLG 279
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
I+H LW P+ G F DYI N K + YQSLHT V DG LEVQIRT +MH AE+G+AAH
Sbjct: 280 IIHNLWKPVPGRFKDYIANKKSNNYQSLHTTVIAMDGKPLEVQIRTWEMHRIAEYGIAAH 339
Query: 514 WLYKETGNKLQSIS---SMDESDIEASSSLSKDTDDHNPLDTDLFQK 557
WLYKE K S S +E L+ D + + +DLF++
Sbjct: 340 WLYKEEIKKPDSFEEKLSWLRQLLEWQKELTDDQEFLESIKSDLFER 386
Score = 122 bits (306), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 114/214 (53%), Gaps = 14/214 (6%)
Query: 84 GTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPS 143
T ++ + G ++ E +++A FA+ AH GQ RK+G+PY+TH + +IL L
Sbjct: 4 ATILLQELLEQGKEKYSSENLKRAFIFAENAHKGQVRKSGEPYITHPVEVAKILMNLGME 63
Query: 144 SGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRL---------SYINQ 194
V+AG+LHDV++D + IE+EFG +V LV +++L +Y Q
Sbjct: 64 ET-----VVIAGLLHDVLEDTNVTKEEIEKEFGKDVLSLVEAITKLEKLSFYPTEAYRAQ 118
Query: 195 LLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 254
LR+ + +LADRLHNM+T+ K + +A+ETL I+ LA RLG+W
Sbjct: 119 NLRKMFIAMAKDIRVIIIKLADRLHNMQTLQYHEEEKQKRIAKETLEIYAPLAHRLGVWD 178
Query: 255 LKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 288
+K LEDL F L+P+ + + +A R +
Sbjct: 179 IKWRLEDLAFRYLEPEKYHYVAKKVAETRKEREK 212
Score = 40.0 bits (92), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 13/104 (12%)
Query: 714 SINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLR 773
S K+ LR +L W+++L + +S S + + V P G+++ L
Sbjct: 351 SFEEKLSWLRQLLEWQKELTDDQEFLES---------IKSDLFEREIYVFTPKGDVIALP 401
Query: 774 SGSTAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
GST D A +VG + VNG++V N L++GDIVE+
Sbjct: 402 QGSTPIDFAYAIHTEVGHRCRGAKVNGRIVPLNYILQNGDIVEI 445
>gi|410456899|ref|ZP_11310748.1| GTP pyrophosphokinase [Bacillus bataviensis LMG 21833]
gi|409927039|gb|EKN64186.1| GTP pyrophosphokinase [Bacillus bataviensis LMG 21833]
Length = 731
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/183 (44%), Positives = 103/183 (56%), Gaps = 14/183 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E V KA +AK AH Q+RK+G+PY+ H I ILA L TV AG LHDVV
Sbjct: 26 ELVSKAYEYAKHAHREQYRKSGEPYIIHPIQVAGILADLEMDPA-----TVAAGFLHDVV 80
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRL------SYINQLLRRHRRINVNQGT---LGHE 212
+D SL IEE F DEVA LV GV++L S+ Q HR++ V +
Sbjct: 81 EDTNISLKDIEEAFNDEVAMLVDGVTKLGKFKYKSHEEQQAENHRKMFVAMAQDIRVILI 140
Query: 213 ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 272
+LADRLHNMRT+ LP K R ++ ETL I+ LA RLG+ +K ELED L PQ +
Sbjct: 141 KLADRLHNMRTLKHLPVEKQRRISNETLEIFAPLAHRLGISKIKWELEDTALRYLNPQQY 200
Query: 273 RKM 275
++
Sbjct: 201 YRI 203
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
++ LS R K +YSI+ KM ++ ++YD A+R+VV +I+ CY++L
Sbjct: 233 SIKAELSGRPKHIYSIYRKMVLQNKQFSEIYDLLAVRIVVN---------SIKDCYAVLG 283
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH AE G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTYEMHRIAEFGVAAH 343
Query: 514 WLYKE 518
W YKE
Sbjct: 344 WAYKE 348
>gi|411116988|ref|ZP_11389475.1| (p)ppGpp synthetase, RelA/SpoT family [Oscillatoriales
cyanobacterium JSC-12]
gi|410713091|gb|EKQ70592.1| (p)ppGpp synthetase, RelA/SpoT family [Oscillatoriales
cyanobacterium JSC-12]
Length = 751
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/133 (50%), Positives = 85/133 (63%), Gaps = 9/133 (6%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+S R K LY I+ KM+R+ G ++YD A+R++V D N + CY L IVH +
Sbjct: 255 ISGRPKHLYGIYQKMQRQQKGYEEIYDVAAVRIIV-DSN--------EECYRSLAIVHDM 305
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
+ PI G F DYI PKP+ YQSLHT V G G LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 306 FRPIPGRFKDYIGLPKPNRYQSLHTVVIGNTGRPLEVQIRTLEMHHVAEYGIAAHWKYKE 365
Query: 519 TGNKLQSISSMDE 531
TGN ++ MDE
Sbjct: 366 TGNSSTPLTGMDE 378
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 111/205 (54%), Gaps = 19/205 (9%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A FA + H GQ+R +G+PY+ H + +A L+ G +V + AG LHDVV+D
Sbjct: 46 RAFDFAYQLHQGQYRASGEPYIIHPV----AVAGLLRDLGGGSV-MIAAGFLHDVVEDTD 100
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLGHEE--------LAD 216
+ +E FG EV LV GV++LS N + R+ N + L + LAD
Sbjct: 101 VTADELETLFGKEVRTLVEGVTKLSKFNFSSKTERQAENFRRMFLAMAQDIRVIVVKLAD 160
Query: 217 RLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 276
RLHNMRT+ LP AK R +A ET I+ LA+RLG+ K ELEDL F L+P +R ++
Sbjct: 161 RLHNMRTLEHLPDAKRRQIALETREIFAPLANRLGIGRFKWELEDLAFKYLEPDAYRNVQ 220
Query: 277 ADLASMWSPRNRVGYSRRITTIVSS 301
+A R R++ IVS+
Sbjct: 221 ELVAE-----KRTDREARLSNIVSA 240
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Query: 715 INNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRS 774
++ K LR +L W+ L+ +S D + GEV + PNG+++ L
Sbjct: 376 MDEKFTWLRQLLDWQSDLKDAQEYLESI--------KDDLFDGEVYVFT-PNGDVVSLSR 426
Query: 775 GSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
G+T D A + VG VNG++ +T LK+GDIVE+
Sbjct: 427 GATPVDFAYRIHTEVGNHCAGARVNGRMATLDTALKNGDIVEI 469
>gi|257784325|ref|YP_003179542.1| (p)ppGpp synthetase I SpoT/RelA [Atopobium parvulum DSM 20469]
gi|257472832|gb|ACV50951.1| (p)ppGpp synthetase I, SpoT/RelA [Atopobium parvulum DSM 20469]
Length = 781
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/180 (43%), Positives = 103/180 (57%), Gaps = 20/180 (11%)
Query: 356 EAQKKAKVVQDAGIAL-TSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMR 414
E Q+ A++V D+ L ++ L EL + + I ++T R K L+SI+ KM
Sbjct: 209 EYQRVARMVSDSRAQRENDLNNAKKTLTDEL--NAAGITDFQIT--GRPKHLWSIYQKMV 264
Query: 415 RKDVGIHKVYDARALRVV---VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIV 471
RK +YD ALRV+ VGD CYS L +H LW P+ G F DYI
Sbjct: 265 RKGREFSNIYDLIALRVITKNVGD------------CYSALGAIHALWHPMPGRFKDYIA 312
Query: 472 NPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDE 531
PK + YQSLHT V GPDG +E+QIRT +MHE +E+G+AAHWLYKE GN +SS D+
Sbjct: 313 TPKANLYQSLHTTVIGPDGRPIEIQIRTAEMHEASEYGIAAHWLYKEEGNSKGKMSSEDK 372
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 103/182 (56%), Gaps = 13/182 (7%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
++ A FA H Q R++G+PY+ H + ILA + DT+ A ++HD V+
Sbjct: 36 KIAAAYTFAADYHKDQRRRSGEPYINHPVEVALILAHDLHMDE----DTICAALMHDTVE 91
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYIN-QLLRRHRRINVNQGTLGHEE-------- 213
D SL I FG VA+LV GV++L+ I + + +N+ + L +
Sbjct: 92 DTSASLDEISSRFGKSVAELVDGVTKLTSIEVSSMDEKQALNLRKMFLAMSKDIRVVIIK 151
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LADRLHNMRT+ ALPP + A+ET+ ++ LA RLG+ ++K ELEDL F L+P+ ++
Sbjct: 152 LADRLHNMRTLAALPPDRRLFKARETMDVYAPLADRLGISSVKWELEDLSFFWLEPEEYQ 211
Query: 274 KM 275
++
Sbjct: 212 RV 213
>gi|91775651|ref|YP_545407.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Methylobacillus flagellatus KT]
gi|91709638|gb|ABE49566.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Methylobacillus flagellatus KT]
Length = 740
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 88/137 (64%), Gaps = 9/137 (6%)
Query: 384 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 443
E+L G++ + R K +YSI +KMRRK + +++YD RA+R++V D
Sbjct: 248 EILQQQLQSAGIQADMMGRPKHIYSIVNKMRRKQLSFNELYDVRAVRILVDD-------- 299
Query: 444 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 503
++ CY++L ++H LW PI EFDDYI PK + Y+SLHT V GP LE+QIRT +MH
Sbjct: 300 -VKDCYAVLGLIHNLWQPIPKEFDDYIARPKSNNYRSLHTVVIGPRNLPLEIQIRTHEMH 358
Query: 504 EYAEHGLAAHWLYKETG 520
++E G+AAHW YKE G
Sbjct: 359 YHSELGVAAHWRYKEGG 375
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 98/228 (42%), Gaps = 37/228 (16%)
Query: 99 FNDEQV---QKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
F+ E+V + ++ FA + G T P L H + IL + + +T+ A
Sbjct: 30 FSTEEVALIRHSVDFAAPCYAGSLEITTVPVLHHVLGVASILVGMSMDA-----ETIAAT 84
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLR--------RHRRINVNQG 207
+LH + +++ F ++ LV G +R+ I R R + Q
Sbjct: 85 VLHACPEYLPGWKEKLQQAFSPQIVALVEGFARMEQIQSFSRPDIGRTKDRKKDSEAQQA 144
Query: 208 TLGHE----------------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLG 251
+ +LADR+ +R++ P + +A+E I+ LA+RLG
Sbjct: 145 QVESMRKMLLAMVEDIRVVLIKLADRVETLRSLAGAPEDEQLRIAEEAKTIYAPLANRLG 204
Query: 252 LWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIV 299
+W +K ELEDL L+P++++++ LA RVG + I ++
Sbjct: 205 VWHIKWELEDLSLRFLEPKLYKEIAKLLAE-----KRVGREQYIKEVL 247
>gi|153209488|ref|ZP_01947403.1| RelA/SpoT family protein [Coxiella burnetii 'MSU Goat Q177']
gi|212218778|ref|YP_002305565.1| GTP pyrophosphokinase [Coxiella burnetii CbuK_Q154]
gi|120575341|gb|EAX31965.1| RelA/SpoT family protein [Coxiella burnetii 'MSU Goat Q177']
gi|212013040|gb|ACJ20420.1| GTP pyrophosphokinase [Coxiella burnetii CbuK_Q154]
Length = 714
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 86/128 (67%), Gaps = 10/128 (7%)
Query: 398 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 457
+S R K +YSIF K++RK V ++YD A+R++V +++ CY+ L IVH
Sbjct: 238 NISGRAKHIYSIFRKIQRKQVDFSEIYDTSAVRILVS---------SLEDCYTALSIVHA 288
Query: 458 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 517
LW PI EFDDYI PK +GY+S+HTAV GP+G +E+QIRT MHE AE G+AAHW YK
Sbjct: 289 LWEPIAKEFDDYIAKPKDNGYRSIHTAVIGPEGHNVEIQIRTYGMHEEAELGVAAHWKYK 348
Query: 518 ETGNKLQS 525
E G K+ S
Sbjct: 349 E-GKKVAS 355
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 67/139 (48%), Gaps = 16/139 (11%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
+T+ A +L+ V + S ++ ++ G VAKL+ G R+ I+ +L R + Q +
Sbjct: 62 ETLAAALLYPTVTQSGISQEALTDQIGKSVAKLLMGTKRMETIDDMLIRSSGFSQQQNFV 121
Query: 210 GHE----------------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 253
+ +L++RL +R P ++ + +AQ+ + ++ LA+RLG+
Sbjct: 122 DNLRKMLLAMVDDVRIVLIKLSERLTTLRYSRHQPISEQKDIAQKIMDLYAPLANRLGVG 181
Query: 254 ALKAELEDLCFAVLQPQIF 272
K ++ED F L P +
Sbjct: 182 QFKWQMEDWAFRYLNPNEY 200
Score = 39.3 bits (90), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 18/100 (18%)
Query: 718 KVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGST 777
K+ LR ++ W++++ + RQ + + + V PNG+++ L +G+T
Sbjct: 360 KINWLREVMDWQKEVSPDVKWRQ--------------IFEDHIYVFTPNGDVIDLEAGAT 405
Query: 778 AADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
D A + +G + VNG++V LK GD VE+
Sbjct: 406 PLDFAYRIHTEIGHRCRGTRVNGKMVPLTRTLKTGDCVEI 445
>gi|229552374|ref|ZP_04441099.1| GTP diphosphokinase [Lactobacillus rhamnosus LMS2-1]
gi|229314276|gb|EEN80249.1| GTP diphosphokinase [Lactobacillus rhamnosus LMS2-1]
Length = 769
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 110/192 (57%), Gaps = 14/192 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA H Q RK+G+PY+ H I ILA L K +TV +G LHDVV+D
Sbjct: 56 VEKAYKFAAYVHKDQVRKSGEPYIIHPIQVAGILAEL-----KMDPETVASGYLHDVVED 110
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYI------NQLLRRHRRINVNQGT---LGHEEL 214
+LG IEE FG +VA +V GV++LS + ++L HR++ + + +L
Sbjct: 111 TNITLGDIEEVFGHDVAVIVDGVTKLSKVTYVAHKDELAENHRKMLLAMAKDLRVIMVKL 170
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHNMRT+ L P K R +A ETL I+ LA RLG+ +K ELEDL L PQ + +
Sbjct: 171 ADRLHNMRTLQHLRPDKQRRIANETLEIYAPLADRLGISTIKWELEDLSLRYLNPQQYYR 230
Query: 275 MRADLASMWSPR 286
+ + S + R
Sbjct: 231 IAHLMNSKRTER 242
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 74/120 (61%), Gaps = 9/120 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+ R K +YSI+ KMR K ++YD A+RV+ I+ CY++L +H
Sbjct: 266 IYGRPKHIYSIYKKMRDKHKQFDELYDLLAIRVIT---------ETIKDCYAVLGAIHTK 316
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W P+ G F DYI PK + YQS+HT V GP G LEVQIRT++MH AE+G+AAHW YKE
Sbjct: 317 WKPMPGRFKDYIAMPKANLYQSIHTTVIGPMGKPLEVQIRTEEMHHVAEYGVAAHWAYKE 376
>gi|418070749|ref|ZP_12708024.1| GTP pyrophosphokinase [Lactobacillus rhamnosus R0011]
gi|357540169|gb|EHJ24186.1| GTP pyrophosphokinase [Lactobacillus rhamnosus R0011]
Length = 741
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 110/192 (57%), Gaps = 14/192 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA H Q RK+G+PY+ H I ILA L K +TV +G LHDVV+D
Sbjct: 28 VEKAYKFAAYVHKDQVRKSGEPYIIHPIQVAGILAEL-----KMDPETVASGYLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYI------NQLLRRHRRINVNQGT---LGHEEL 214
+LG IEE FG +VA +V GV++LS + ++L HR++ + + +L
Sbjct: 83 KNITLGDIEEVFGHDVAVIVDGVTKLSKVTYVAHKDELAENHRKMLLAMAKDLRVIMVKL 142
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHNMRT+ L P K R +A ETL I+ LA RLG+ +K ELEDL L PQ + +
Sbjct: 143 ADRLHNMRTLQHLRPDKQRRIANETLEIYAPLADRLGISTIKWELEDLSLRYLNPQQYYR 202
Query: 275 MRADLASMWSPR 286
+ + S + R
Sbjct: 203 IAHLMNSKRTER 214
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 74/120 (61%), Gaps = 9/120 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+ R K +YSI+ KMR K ++YD A+RV+ I+ CY++L +H
Sbjct: 238 IYGRPKHIYSIYKKMRDKHKQFDELYDLLAIRVIT---------ETIKDCYAVLGAIHTK 288
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W P+ G F DYI PK + YQS+HT V GP G LEVQIRT++MH AE+G+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKANLYQSIHTTVIGPMGKPLEVQIRTEEMHHVAEYGVAAHWAYKE 348
>gi|237742590|ref|ZP_04573071.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Fusobacterium sp. 4_1_13]
gi|294784891|ref|ZP_06750179.1| GTP diphosphokinase [Fusobacterium sp. 3_1_27]
gi|229430238|gb|EEO40450.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Fusobacterium sp. 4_1_13]
gi|294486605|gb|EFG33967.1| GTP diphosphokinase [Fusobacterium sp. 3_1_27]
Length = 724
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 109/183 (59%), Gaps = 14/183 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
++++ A+ FA+ +H GQ+RK+GD Y+ H + +IL + K DT+VAG+LHDVV
Sbjct: 21 DKIKLALGFAEESHQGQYRKSGDDYIVHPVEVAKILMDM-----KMDTDTIVAGLLHDVV 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE-------- 213
+D + I+ FGD VA LV GV++L + + N+ + L E
Sbjct: 76 EDTLIPIADIKYNFGDTVATLVDGVTKLKALPNGTKNQAE-NIRKMILAMAENIRVILIK 134
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LADRLHNMRT+ + P K +++++ETL I+ LA RLG+ +K+ELEDL F+ L F
Sbjct: 135 LADRLHNMRTLKFMKPEKQQSISKETLDIYAPLAHRLGMAKVKSELEDLAFSYLHHDEFL 194
Query: 274 KMR 276
+++
Sbjct: 195 EIK 197
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 73/126 (57%), Gaps = 9/126 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K YSI+ KM +K +YD +RV+V DK CY +L
Sbjct: 226 GIKAEVKGRFKHFYSIYKKMYQKGKEFDDIYDLMGVRVIVDDK---------ATCYHVLG 276
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH + P+ G F DYI PK + YQS+HT + GP G +E+QIRT+ M E AE G+AAH
Sbjct: 277 IVHSQYTPVPGRFKDYIAVPKSNNYQSIHTTIVGPLGKFIEIQIRTKDMDEIAEEGIAAH 336
Query: 514 WLYKET 519
W YKE
Sbjct: 337 WNYKEN 342
>gi|165923932|ref|ZP_02219764.1| RelA/SpoT family protein [Coxiella burnetii Q321]
gi|165916624|gb|EDR35228.1| RelA/SpoT family protein [Coxiella burnetii Q321]
Length = 714
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 86/128 (67%), Gaps = 10/128 (7%)
Query: 398 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 457
+S R K +YSIF K++RK V ++YD A+R++V +++ CY+ L IVH
Sbjct: 238 NISGRAKHIYSIFRKIQRKQVDFSEIYDTSAVRILVS---------SLEDCYTALSIVHA 288
Query: 458 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 517
LW PI EFDDYI PK +GY+S+HTAV GP+G +E+QIRT MHE AE G+AAHW YK
Sbjct: 289 LWEPIAKEFDDYIAKPKDNGYRSIHTAVIGPEGHNVEIQIRTYGMHEEAELGVAAHWKYK 348
Query: 518 ETGNKLQS 525
E G K+ S
Sbjct: 349 E-GKKVAS 355
Score = 52.8 bits (125), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 67/139 (48%), Gaps = 16/139 (11%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
+T+ A +L+ V + S ++ ++ G VAKL+ G R+ I+ +L R + Q +
Sbjct: 62 ETLAAALLYPTVTQSGISQEALTDQIGKSVAKLLMGTKRMETIDDMLIRSSGFSQQQNFV 121
Query: 210 GHE----------------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 253
+ +L++RL +R P ++ + +AQ+ + ++ LA+RLG+
Sbjct: 122 DNLRKMLLAMVDDVRIVLIKLSERLTTLRYSRHQPISEQKDIAQKIMDLYAPLANRLGVG 181
Query: 254 ALKAELEDLCFAVLQPQIF 272
K ++ED F L P +
Sbjct: 182 QFKWQMEDWAFRYLNPNEY 200
Score = 39.3 bits (90), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 18/100 (18%)
Query: 718 KVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGST 777
K+ LR ++ W++++ + RQ + + + V PNG+++ L +G+T
Sbjct: 360 KINWLREVMDWQKEVSPDVKWRQ--------------IFEDHIYVFTPNGDVIDLEAGAT 405
Query: 778 AADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
D A + +G + VNG++V LK GD VE+
Sbjct: 406 PLDFAYRIHTEIGHRCRGTRVNGKMVPLTRTLKTGDCVEI 445
>gi|423078898|ref|ZP_17067574.1| GTP diphosphokinase, partial [Lactobacillus rhamnosus ATCC 21052]
gi|357548801|gb|EHJ30660.1| GTP diphosphokinase, partial [Lactobacillus rhamnosus ATCC 21052]
Length = 760
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 110/192 (57%), Gaps = 14/192 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA H Q RK+G+PY+ H I ILA L K +TV +G LHDVV+D
Sbjct: 47 VEKAYKFAAYVHKDQVRKSGEPYIIHPIQVAGILAEL-----KMDPETVASGYLHDVVED 101
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYI------NQLLRRHRRINVNQGT---LGHEEL 214
+LG IEE FG +VA +V GV++LS + ++L HR++ + + +L
Sbjct: 102 KNITLGDIEEVFGHDVAVIVDGVTKLSKVTYVAHKDELAENHRKMLLAMAKDLRVIMVKL 161
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHNMRT+ L P K R +A ETL I+ LA RLG+ +K ELEDL L PQ + +
Sbjct: 162 ADRLHNMRTLQHLRPDKQRRIANETLEIYAPLADRLGISTIKWELEDLSLRYLNPQQYYR 221
Query: 275 MRADLASMWSPR 286
+ + S + R
Sbjct: 222 IAHLMNSKRTER 233
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 74/120 (61%), Gaps = 9/120 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+ R K +YSI+ KMR K ++YD A+RV+ I+ CY++L +H
Sbjct: 257 IYGRPKHIYSIYKKMRDKHKQFDELYDLLAIRVIT---------ETIKDCYAVLGAIHTK 307
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W P+ G F DYI PK + YQS+HT V GP G LEVQIRT++MH AE+G+AAHW YKE
Sbjct: 308 WKPMPGRFKDYIAMPKANLYQSIHTTVIGPMGKPLEVQIRTEEMHHVAEYGVAAHWAYKE 367
>gi|374622074|ref|ZP_09694602.1| GTP diphosphokinase [Ectothiorhodospira sp. PHS-1]
gi|373941203|gb|EHQ51748.1| GTP diphosphokinase [Ectothiorhodospira sp. PHS-1]
Length = 723
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 101/166 (60%), Gaps = 17/166 (10%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+E + R K +YSI+ KM RK + +YD RA+RV+V DK T CY++L +
Sbjct: 238 VEGEVRGRPKHIYSIWKKMDRKQLEFQDLYDLRAVRVIV-DKVAT--------CYAVLGV 288
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH W I EFDDYI NPK +GYQSLHTAV GP+G +EVQIRT+ M +AE G+AAHW
Sbjct: 289 VHSRWPHIPKEFDDYIANPKDNGYQSLHTAVIGPNGKVVEVQIRTRDMDAFAELGVAAHW 348
Query: 515 LYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSS 560
YKE G + Q++ + A +SL + +H D +L + + S
Sbjct: 349 RYKEGGREDQAL-------MRAIASLRR-LLEHQEDDRELLEDFRS 386
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 18/162 (11%)
Query: 125 PYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVA 184
P HC+ L +L DT++A +L D D S + FG+ VA+LV
Sbjct: 49 PRQPHCLDVAENLRVLGVDK-----DTLIAALLLDAHFDGSLSDEDLSRHFGEPVARLVK 103
Query: 185 GVSRLSYIN-------------QLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAK 231
V L+ + LRR V+ +LA RL ++R + P A
Sbjct: 104 NVHLLTTFRSAPGQLDGAPEQAERLRRMLLAMVDDVRAVLIKLAYRLQHLRLMSQEPDAL 163
Query: 232 ARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
ARA A+ET I+ LA+RLG+ +K E+EDL F + P +R
Sbjct: 164 ARAYARETQEIFTPLANRLGVAQVKWEMEDLAFRIQDPDHYR 205
>gi|357514021|ref|XP_003627299.1| GTP pyrophosphokinase [Medicago truncatula]
gi|355521321|gb|AET01775.1| GTP pyrophosphokinase [Medicago truncatula]
Length = 467
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 116/202 (57%), Gaps = 19/202 (9%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF +E V KA A++AH GQ R +GDPYL HC+ T +LA++ +S V AG
Sbjct: 215 HKIFCEEFVIKAFCEAEKAHRGQMRASGDPYLQHCLETAVLLALIGANS-----TVVAAG 269
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHR---------RINVNQ 206
+LHD VDDA + I FG VA LV GVS+LS++++L R + R++
Sbjct: 270 LLHDTVDDAFLTYDYIYGMFGAGVADLVEGVSKLSHLSKLARDNNTASKSVEADRLHTMF 329
Query: 207 GTLGHE-----ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 261
+ +LADRLHNM T+ ALP AK + A+ETL I+ LA+RLG+ K +LE+
Sbjct: 330 LAMADARAVLIKLADRLHNMMTLDALPVAKQQRFAKETLEIFAPLANRLGIANWKDQLEN 389
Query: 262 LCFAVLQPQIFRKMRADLASMW 283
LCF L P +++ + L +
Sbjct: 390 LCFKHLNPVQHKELSSKLVESY 411
>gi|212212252|ref|YP_002303188.1| GTP pyrophosphokinase [Coxiella burnetii CbuG_Q212]
gi|212010662|gb|ACJ18043.1| GTP pyrophosphokinase [Coxiella burnetii CbuG_Q212]
Length = 714
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 86/128 (67%), Gaps = 10/128 (7%)
Query: 398 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 457
+S R K +YSIF K++RK V ++YD A+R++V +++ CY+ L IVH
Sbjct: 238 NISGRAKHIYSIFRKIQRKQVDFSEIYDTSAVRILVS---------SLEDCYTALSIVHA 288
Query: 458 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 517
LW PI EFDDYI PK +GY+S+HTAV GP+G +E+QIRT MHE AE G+AAHW YK
Sbjct: 289 LWEPIAKEFDDYIAKPKDNGYRSIHTAVIGPEGHNVEIQIRTYGMHEEAELGVAAHWKYK 348
Query: 518 ETGNKLQS 525
E G K+ S
Sbjct: 349 E-GKKVAS 355
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 67/139 (48%), Gaps = 16/139 (11%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
+T+ A +L+ V + S ++ ++ G VAKL+ G R+ I+ +L R + Q +
Sbjct: 62 ETLAAALLYPTVTQSGISQEALTDQIGKSVAKLLMGTKRMETIDGMLIRSSGFSQQQNFV 121
Query: 210 GHE----------------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 253
+ +L++RL +R P ++ + +AQ+ + ++ LA+RLG+
Sbjct: 122 DNLRKMLLAMVDDVRIVLIKLSERLTTLRYSRHQPISEQKDIAQKIMDLYAPLANRLGVG 181
Query: 254 ALKAELEDLCFAVLQPQIF 272
K ++ED F L P +
Sbjct: 182 QFKWQMEDWAFRYLNPNEY 200
>gi|254424339|ref|ZP_05038057.1| RelA/SpoT family protein [Synechococcus sp. PCC 7335]
gi|196191828|gb|EDX86792.1| RelA/SpoT family protein [Synechococcus sp. PCC 7335]
Length = 771
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 85/133 (63%), Gaps = 9/133 (6%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+SSR K LYSI+ KM+R+ ++YD A+R++V K+ CY L + H L
Sbjct: 273 VSSRPKHLYSIYKKMQRQQKEFQEIYDIAAIRLLVNTKDE---------CYRALAVAHDL 323
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
+ PI G F DYI PKP+ YQSLHT V GP G +EVQIRT +MH AE+G+AAHW YKE
Sbjct: 324 YRPIPGRFKDYIGLPKPNRYQSLHTVVMGPHGRPIEVQIRTVEMHHIAEYGIAAHWKYKE 383
Query: 519 TGNKLQSISSMDE 531
+GN +I+ DE
Sbjct: 384 SGNSHTTITQDDE 396
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 105/193 (54%), Gaps = 14/193 (7%)
Query: 92 DVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+++ P + V +A +A + H GQ R +G+PY+ H + +L L G A+
Sbjct: 50 ELSPTPASGNRLVCQAFEYAYQLHKGQMRASGEPYIAHPVAVAGLLRSL---GGDSAM-- 104
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRRINVN 205
+ AG LHDVV+D + I FG EV LV GV++LS Q RR+ +
Sbjct: 105 IAAGFLHDVVEDTEVTADEIGAIFGAEVRHLVEGVTKLSKFEFDSKTEQQAENFRRMFLA 164
Query: 206 QGT---LGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 262
+ +LADRLHNMRT+ L P K +A+ETL I+ LA+RLG+ K ELEDL
Sbjct: 165 MAKDIRVIVVKLADRLHNMRTLQHLRPDKQVRIARETLEIFAPLANRLGIGRFKWELEDL 224
Query: 263 CFAVLQPQIFRKM 275
CF L+P+ ++++
Sbjct: 225 CFKYLEPEAYKEL 237
Score = 44.3 bits (103), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 716 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 775
+ K LR +L W+ +L+ Q L N D E V PNG+++ L G
Sbjct: 395 DEKFTWLRQLLDWQNELKDA----QEYLSDVKNNLFD-----EEVYAFTPNGDVVPLSRG 445
Query: 776 STAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
+T D A + VG V+G++V NTEL++GDIVE+
Sbjct: 446 ATPVDFAYRIHTEVGNHCAGAKVSGRIVPLNTELQNGDIVEI 487
>gi|220904804|ref|YP_002480116.1| (p)ppGpp synthetase I SpoT/RelA [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219869103|gb|ACL49438.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 719
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 89/140 (63%), Gaps = 13/140 (9%)
Query: 381 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 440
L K+LL S G+E + R+K YSI+ KM+ + + + +++D A RV+V D
Sbjct: 219 LIKDLLASN----GIEGQVYGRIKHKYSIYKKMQSQSLTLDEMHDIMAFRVLVKD----- 269
Query: 441 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 500
I+ CY+ L +VH W P+ G F DYI PK +GYQSLHT V GP+G +E+QIRT+
Sbjct: 270 ----IRDCYAALGLVHSQWRPVHGRFKDYISMPKTNGYQSLHTTVIGPEGERIEIQIRTE 325
Query: 501 KMHEYAEHGLAAHWLYKETG 520
MH AEHG+AAHWLYKE G
Sbjct: 326 DMHRQAEHGVAAHWLYKEKG 345
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 107/183 (58%), Gaps = 14/183 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E +QKA +A AH GQ R +G+PYL+H + LA + TVVAG+LHD V
Sbjct: 21 ELIQKAYVYAATAHAGQTRLSGEPYLSHPLAVADTLAEMGFDES-----TVVAGLLHDTV 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYI---NQLLRRHRRINVNQGTLGHE------ 212
+D +L ++E FG++VA +V GV+++S I N+ + I + H+
Sbjct: 76 EDTKATLEELDENFGEDVADIVDGVTKISMIPFENKEEAQAENIRKMILAMSHDMRVLMV 135
Query: 213 ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 272
+LADRLHNMRT+ K + +AQET+ I+ LA+RLGL+ +K LEDL F L+P IF
Sbjct: 136 KLADRLHNMRTLDFQKAHKQKGIAQETMDIYAPLANRLGLYIMKRNLEDLSFKYLRPDIF 195
Query: 273 RKM 275
++
Sbjct: 196 NQI 198
Score = 39.3 bits (90), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 760 VIVCWPNGEIMRLRSGSTAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
V V P G++ L G+T D A KVG +NG+L+ +TELK+GDIVE+
Sbjct: 387 VYVYTPAGDVKELPEGATPLDFAFIIHTKVGQHCTGAKINGRLMPLSTELKNGDIVEI 444
>gi|410667595|ref|YP_006919966.1| GTP pyrophosphokinase RelA [Thermacetogenium phaeum DSM 12270]
gi|409105342|gb|AFV11467.1| GTP pyrophosphokinase RelA [Thermacetogenium phaeum DSM 12270]
Length = 726
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 115/200 (57%), Gaps = 14/200 (7%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP F+ E V++A FAK AH GQFR +G+ ++ H + ILA L + + ++VAG
Sbjct: 14 YPNFDRELVERAYLFAKEAHRGQFRNSGEAFIEHPLQVACILADL-----QLDITSIVAG 68
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLGHE-- 212
+LHDVV+D SL IE +FG EV LVAGV++L I + R N+ + L
Sbjct: 69 LLHDVVEDTNTSLQDIETDFGPEVRFLVAGVTKLGKIEYKSKEDRHAENLRKMFLAMARD 128
Query: 213 ------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAV 266
+LADRLHN+RT+ A K R +A+ETL I+ +A RLG++ +K E+EDL F
Sbjct: 129 IRVILIKLADRLHNLRTLGAHEVPKQREIARETLEIFAPVAHRLGIYKIKWEMEDLAFRY 188
Query: 267 LQPQIFRKMRADLASMWSPR 286
L+P + ++ +A R
Sbjct: 189 LEPDKYYELADRIAKKRKER 208
Score = 119 bits (297), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 79/127 (62%), Gaps = 9/127 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K+ YSI+ KM + + ++YD A+RV+V ++ CY+ L
Sbjct: 227 GIKAEISGRPKNFYSIYRKMVDQGKDLSEIYDLVAVRVIV---------ETVKECYATLG 277
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH +W PI G F DYI PK + YQSLHT + GP G E+QIRT +MH AE+G+AAH
Sbjct: 278 IVHTMWKPIPGRFKDYIAMPKQNMYQSLHTTLVGPLGEPFELQIRTFEMHRTAEYGIAAH 337
Query: 514 WLYKETG 520
W YKE G
Sbjct: 338 WRYKEGG 344
Score = 43.9 bits (102), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 15/107 (14%)
Query: 712 EASINNKVRLLRTMLRWEEQLRSEASLRQS-KLGGKANGNPDSVVPGEVVIVCWPNGEIM 770
+ K+ LR +L W+ +LR +S K+ + +VV V P G+++
Sbjct: 348 DPEFEKKLSWLRQILEWQHELRDAREFMESLKID----------LFSDVVFVFTPKGDVV 397
Query: 771 RLRSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 813
L SGS D A ++ E G + VNG++V + LK+GDIVE+
Sbjct: 398 ELPSGSVPIDFAYRIHTEVGHRCIGAKVNGRIVPLDYRLKNGDIVEI 444
>gi|154706244|ref|YP_001424809.1| GTP pyrophosphokinase [Coxiella burnetii Dugway 5J108-111]
gi|154355530|gb|ABS76992.1| GTP pyrophosphokinase [Coxiella burnetii Dugway 5J108-111]
Length = 714
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 86/128 (67%), Gaps = 10/128 (7%)
Query: 398 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 457
+S R K +YSIF K++RK V ++YD A+R++V +++ CY+ L IVH
Sbjct: 238 NISGRAKHIYSIFRKIQRKQVDFSEIYDTSAVRILVS---------SLEDCYTALSIVHA 288
Query: 458 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 517
LW PI EFDDYI PK +GY+S+HTAV GP+G +E+QIRT MHE AE G+AAHW YK
Sbjct: 289 LWEPIAKEFDDYIAKPKDNGYRSIHTAVIGPEGHNVEIQIRTYGMHEEAELGVAAHWKYK 348
Query: 518 ETGNKLQS 525
E G K+ S
Sbjct: 349 E-GKKVAS 355
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 67/139 (48%), Gaps = 16/139 (11%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
+T+ A +L+ V + S ++ ++ G VAKL+ G R+ I+ +L R + Q +
Sbjct: 62 ETLAAALLYPTVTQSGISQEALTDQIGKSVAKLLMGTKRMETIDDMLIRSSGFSQQQNFV 121
Query: 210 GHE----------------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 253
+ +L++RL +R P ++ + +AQ+ + ++ LA+RLG+
Sbjct: 122 DNLRKMLLAMVDDVRIVLIKLSERLTTLRYSRHQPISEQKDIAQKIMDLYAPLANRLGVG 181
Query: 254 ALKAELEDLCFAVLQPQIF 272
K ++ED F L P +
Sbjct: 182 QFKWQMEDWAFRYLNPNEY 200
>gi|406915367|gb|EKD54454.1| hypothetical protein ACD_60C00079G0007 [uncultured bacterium]
Length = 680
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 87/126 (69%), Gaps = 9/126 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ ++ R K +YSI+ K +K++ +YD A+R++V P +Q CY L
Sbjct: 245 GIKADIAGRAKHIYSIYLKSLKKNLNYRDIYDCSAVRILV---------PTVQDCYLALS 295
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH+++ + EFDDYI +PK +GY+S+HTAV G DG LEVQIRT +MHE+AEHG+AAH
Sbjct: 296 IVHQIFEHLTEEFDDYISHPKQNGYRSIHTAVIGSDGKYLEVQIRTPEMHEFAEHGVAAH 355
Query: 514 WLYKET 519
W+YKET
Sbjct: 356 WVYKET 361
Score = 65.9 bits (159), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 108/242 (44%), Gaps = 36/242 (14%)
Query: 79 LEEQPGTFIVDGVDVTG--------YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHC 130
L++Q + D +D+ Y + + + +QK++ FA+ G G L
Sbjct: 4 LKQQNLPLVKDSIDINSWLNDIRHRYQLRDTDLIQKSMEFAEIHSKGLTTFYGQSCLEQS 63
Query: 131 IHTGRILA-MLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRL 189
+ IL M + + V A I+ + S+ +I+E G+ AKL A V ++
Sbjct: 64 LTMADILLDMQLDQTA------VAASIITSTLQHTSISIETIKETLGERTAKLAASVMQM 117
Query: 190 SYINQLLRRHRRINVNQGTLGHE--------------ELADRLHNMRTIYALPPAKARAV 235
+ +++L + R N Q L + +LA+R+ MR I + P + + +
Sbjct: 118 NALDKLSNKTR--NKMQVDLLRKLFLAMVSDIRVVLIKLAERICIMRGIKHVNPRERKRI 175
Query: 236 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRI 295
A+ET+ I+ LA+RLG+ LK ELED F L P ++ + LA R+ RI
Sbjct: 176 AEETMDIYAPLANRLGIGQLKWELEDHAFHYLDPDTYKTIADFLAE-----RRIDREERI 230
Query: 296 TT 297
T
Sbjct: 231 QT 232
>gi|326506174|dbj|BAJ86405.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 505
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 117/200 (58%), Gaps = 19/200 (9%)
Query: 98 IFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGIL 157
IF++E V KA A++AHHGQ R +GDP+L HC+ T +LA + S+ V AG+L
Sbjct: 213 IFHEELVVKAFFEAEKAHHGQTRASGDPFLQHCVETAVLLAKIGASA-----TVVSAGLL 267
Query: 158 HDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHR---------RINVNQGT 208
HD +DD+ I FG VA LV GVS+LS++++L R + R++
Sbjct: 268 HDTIDDSFVDYDHIFHMFGAGVADLVEGVSKLSHLSKLARDNNTASRTAEADRLHTMLLA 327
Query: 209 LGHE-----ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLC 263
+ +LADR+HNMRT+ ALP K + A+ET+ I+ LA+RLG+ + K +LE+LC
Sbjct: 328 MADARAVLIKLADRVHNMRTLEALPLVKQQRFAKETMEIFVPLANRLGIASWKDQLENLC 387
Query: 264 FAVLQPQIFRKMRADLASMW 283
F L P+ +++ + A +
Sbjct: 388 FKHLNPEEHKELSSKFAETF 407
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 53/81 (65%), Gaps = 9/81 (11%)
Query: 398 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 457
LS R K+LYS++SKM++K++ + +V+D LR+VV DK + CY LD+VH+
Sbjct: 432 NLSGRNKNLYSVYSKMQKKNLTMDEVHDIHGLRLVV-DKE--------EDCYRALDVVHK 482
Query: 458 LWIPIDGEFDDYIVNPKPSGY 478
LW +DG F DYI PK +GY
Sbjct: 483 LWPQVDGRFKDYISLPKLNGY 503
>gi|303327509|ref|ZP_07357950.1| GTP diphosphokinase [Desulfovibrio sp. 3_1_syn3]
gi|302862449|gb|EFL85382.1| GTP diphosphokinase [Desulfovibrio sp. 3_1_syn3]
Length = 719
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 89/135 (65%), Gaps = 12/135 (8%)
Query: 386 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 445
L+++++I G + R+K YSI+ KM+ + + + +++D A RV+V D I
Sbjct: 223 LLASNHIQG---QVYGRIKHKYSIYKKMQSQSLTLDEMHDIMAFRVLVKD---------I 270
Query: 446 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 505
+ CY++L +VH W P+ G F DYI PK +GYQSLHT V GP+G +E+QIRT+ MH
Sbjct: 271 KDCYAVLGLVHSQWRPVHGRFKDYISMPKANGYQSLHTTVIGPEGERIEIQIRTEDMHRQ 330
Query: 506 AEHGLAAHWLYKETG 520
AEHG+AAHWLYKE G
Sbjct: 331 AEHGVAAHWLYKEKG 345
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 105/185 (56%), Gaps = 18/185 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E +QKA FA AH GQ R +G+PYL+H + LA + D TV AG+LHD
Sbjct: 21 ELIQKAYVFAATAHAGQTRLSGEPYLSHPLAVADTLAEM-------GFDEPTVAAGLLHD 73
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYI---NQLLRRHRRINVNQGTLGHE---- 212
V+D ++ I+E FG+EVA +V GV+++S I N+ + I + H+
Sbjct: 74 TVEDTKATIEEIDENFGEEVADIVDGVTKISMIPFENKEEAQAENIRKMILAMSHDMRVL 133
Query: 213 --ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
+LADR HNM T+ K + +AQET+ I+ LA+RLGL+ LK LEDL F L+P
Sbjct: 134 MVKLADRQHNMSTLDFQKAHKQKRIAQETMDIYAPLANRLGLYMLKRNLEDLSFKYLRPD 193
Query: 271 IFRKM 275
+F ++
Sbjct: 194 VFNQI 198
Score = 39.3 bits (90), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 760 VIVCWPNGEIMRLRSGSTAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
V V P G++ L G+T D A KVG VNG+L+ +TELK+GDIVE+
Sbjct: 387 VYVYTPAGDVKELPEGATPLDFAFLIHTKVGQHCAGAKVNGRLMPLSTELKNGDIVEI 444
>gi|345891626|ref|ZP_08842465.1| hypothetical protein HMPREF1022_01125 [Desulfovibrio sp.
6_1_46AFAA]
gi|345048010|gb|EGW51857.1| hypothetical protein HMPREF1022_01125 [Desulfovibrio sp.
6_1_46AFAA]
Length = 719
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 89/135 (65%), Gaps = 12/135 (8%)
Query: 386 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 445
L+++++I G + R+K YSI+ KM+ + + + +++D A RV+V D I
Sbjct: 223 LLASNHIQG---QVYGRIKHKYSIYKKMQSQSLTLDEMHDIMAFRVLVKD---------I 270
Query: 446 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 505
+ CY++L +VH W P+ G F DYI PK +GYQSLHT V GP+G +E+QIRT+ MH
Sbjct: 271 KDCYAVLGLVHSQWRPVHGRFKDYISMPKANGYQSLHTTVIGPEGERIEIQIRTEDMHRQ 330
Query: 506 AEHGLAAHWLYKETG 520
AEHG+AAHWLYKE G
Sbjct: 331 AEHGVAAHWLYKEKG 345
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 104/183 (56%), Gaps = 14/183 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E +QKA FA AH GQ R +G+PYL+H + LA + TV AG+LHD V
Sbjct: 21 ELIQKAYVFAATAHAGQTRLSGEPYLSHPLAVADTLAEMGFDE-----PTVAAGLLHDTV 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYI---NQLLRRHRRINVNQGTLGHE------ 212
+D ++ I+E FG+EVA +V GV+++S I N+ + I + H+
Sbjct: 76 EDTKATIEEIDENFGEEVADIVDGVTKISMIPFENKEEAQAENIRKMILAMSHDMRVLMV 135
Query: 213 ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 272
+LADR HNM T+ K + +AQET+ I+ LA+RLGL+ LK LEDL F L+P +F
Sbjct: 136 KLADRQHNMSTLDFQKAHKQKRIAQETMDIYAPLANRLGLYMLKRNLEDLSFKYLRPDVF 195
Query: 273 RKM 275
++
Sbjct: 196 NQI 198
Score = 39.3 bits (90), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 760 VIVCWPNGEIMRLRSGSTAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
V V P G++ L G+T D A KVG VNG+L+ +TELK+GDIVE+
Sbjct: 387 VYVYTPAGDVKELPEGATPLDFAFLIHTKVGQHCAGAKVNGRLMPLSTELKNGDIVEI 444
>gi|19704814|ref|NP_604376.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
gi|296327789|ref|ZP_06870328.1| GTP diphosphokinase [Fusobacterium nucleatum subsp. nucleatum ATCC
23726]
gi|19715157|gb|AAL95675.1| Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase
[Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
gi|296155136|gb|EFG95914.1| GTP diphosphokinase [Fusobacterium nucleatum subsp. nucleatum ATCC
23726]
Length = 725
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 109/183 (59%), Gaps = 14/183 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
++++ A+ FA+ +H GQ+RK+GD Y+ H + +IL + K DT+VAG+LHDVV
Sbjct: 22 DKIKLALGFAEESHQGQYRKSGDDYIIHPVEVAKILMDM-----KMDTDTIVAGLLHDVV 76
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE-------- 213
+D + I+ FGD VA LV GV++L + + N+ + L E
Sbjct: 77 EDTLIPIADIKYNFGDTVATLVDGVTKLKTLPNGTKNQAE-NIRKMILAMAENIRVILIK 135
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LADRLHNMRT+ + P K +++++ETL I+ LA RLG+ +K+ELED+ F+ L F
Sbjct: 136 LADRLHNMRTLKFMKPEKQQSISKETLDIYAPLAHRLGMAKIKSELEDIAFSYLHHDEFL 195
Query: 274 KMR 276
+++
Sbjct: 196 EIK 198
Score = 112 bits (280), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 72/125 (57%), Gaps = 9/125 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
++ + R K YSI+ KM +K +YD +RV+V DK CY +L I
Sbjct: 228 IKAEVKGRFKHFYSIYKKMYQKGKEFDDIYDLMGVRVIVEDK---------ATCYHVLGI 278
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH + P+ G F DYI PK + YQS+HT + GP G +E+QIRT+ M + AE G+AAHW
Sbjct: 279 VHSQYTPVPGRFKDYIAVPKSNNYQSIHTTIVGPLGKFIEIQIRTKDMDDIAEEGIAAHW 338
Query: 515 LYKET 519
YKE
Sbjct: 339 NYKEN 343
>gi|238022794|ref|ZP_04603220.1| hypothetical protein GCWU000324_02706 [Kingella oralis ATCC 51147]
gi|237865997|gb|EEP67133.1| hypothetical protein GCWU000324_02706 [Kingella oralis ATCC 51147]
Length = 730
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ ++ R K +YSI+ KM +K + +YD RA+R++V I CY+ L
Sbjct: 246 GIQYDVAGRPKHIYSIYKKMVKKKLDFEGLYDIRAVRILVN---------TIPECYATLG 296
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
I+H L+ PI GEFDDYI NPK +GY+SLHT + GP+ ++EVQIRT +MH++ E G+AAH
Sbjct: 297 IIHSLFQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKSIEVQIRTFEMHQFNEFGVAAH 356
Query: 514 WLYKETGN 521
W YKE G
Sbjct: 357 WRYKEGGK 364
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 34/211 (16%)
Query: 92 DVTGYPIFNDEQVQKAIAFAKR---AHHGQFRKTG---DPYLTHCIHTGRILAM--LIPS 143
D Y Q QK + A++ H+ KT +P L H + +++A L+P
Sbjct: 13 DYEAYTAAQSPQAQKLLHTAQQLAAQHYPPEAKTHIAREPVLQHLLAAAKMVAEMDLLP- 71
Query: 144 SGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL-------- 195
+ V A +L ++ ++ E+ G V LV G+ + +
Sbjct: 72 ------EAVAATVLAEISSYLPNWQETVSEQCGKTVVTLVQGIDEVQKLTHFAKVDALAT 125
Query: 196 ----------LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPA-KARAVAQETLLIWC 244
+R+ V+ + +LA R M+ + P + + RAVA+ETL I+
Sbjct: 126 PDERAAQAEAMRKMLLAMVSDIRVVLIKLALRTRTMQFLGQTPDSPEKRAVAKETLDIFA 185
Query: 245 SLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
LA+RLG+W LK +LEDL F P+ ++++
Sbjct: 186 PLANRLGVWQLKWQLEDLGFRHQNPEEYKRI 216
>gi|160913537|ref|ZP_02076228.1| hypothetical protein EUBDOL_00013 [Eubacterium dolichum DSM 3991]
gi|158434089|gb|EDP12378.1| RelA/SpoT family protein [Eubacterium dolichum DSM 3991]
Length = 733
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 109/182 (59%), Gaps = 14/182 (7%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
N + + +A FA++ H GQFRK+G+PY+ H I G ILA+L +G + T+ AG LHD
Sbjct: 25 NIDLITRAYLFAEKNHCGQFRKSGEPYIIHAIQVGYILALL--RTGPK---TIAAGFLHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRRINVNQGT---LG 210
VV+D S + E FG+EVA LV V+++S + L HR+I + +
Sbjct: 80 VVEDCNVSKQEVSELFGEEVATLVESVTKISNLKFQDEKEYLASNHRKIFIAMAKDVRVI 139
Query: 211 HEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
+LADRLHNMRT+ +P AK + +A ETL ++ +A RLG+ +K ELEDL F L+ +
Sbjct: 140 LVKLADRLHNMRTLQYMPSAKQQKIANETLEVYAPIAHRLGISDIKNELEDLSFQYLKKE 199
Query: 271 IF 272
+
Sbjct: 200 KY 201
Score = 106 bits (264), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 69/118 (58%), Gaps = 9/118 (7%)
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K LYSI+ KM K+ ++ D A+R+V + CY +L +H + P
Sbjct: 242 RSKHLYSIYKKMVTKNKRFEEILDLLAIRIVTDTDSA---------CYEILGYIHAKYRP 292
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET 519
I G F DYI PK + YQSLHT + DG+ EVQIRT+KM E AE G+AAHW YKE+
Sbjct: 293 IPGRFKDYIAMPKVNMYQSLHTTIVADDGNIFEVQIRTEKMDEIAEQGIAAHWRYKES 350
>gi|422339976|ref|ZP_16420932.1| GTP diphosphokinase [Fusobacterium nucleatum subsp. polymorphum
F0401]
gi|355370415|gb|EHG17798.1| GTP diphosphokinase [Fusobacterium nucleatum subsp. polymorphum
F0401]
Length = 725
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 109/183 (59%), Gaps = 14/183 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
++++ A+ FA+ +H GQ+RK+GD Y+ H + +IL + K DT+VAG+LHDVV
Sbjct: 22 DKIKLALGFAEESHQGQYRKSGDDYIIHPVEVAKILMDM-----KMDTDTIVAGLLHDVV 76
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE-------- 213
+D + I+ FGD VA LV GV++L + + N+ + L E
Sbjct: 77 EDTLIPIADIKYNFGDTVATLVDGVTKLKALPNGTKNQAE-NIRKMILAMAENIRVILIK 135
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LADRLHNMRT+ + P K +++++ETL I+ LA RLG+ +K+ELED+ F+ L F
Sbjct: 136 LADRLHNMRTLKFMKPEKQQSISKETLDIYAPLAHRLGMAKIKSELEDMAFSYLHHDEFL 195
Query: 274 KMR 276
+++
Sbjct: 196 EIK 198
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 73/126 (57%), Gaps = 9/126 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K YSI+ KM +K +YD +RV+V DK CY +L
Sbjct: 227 GIKAEVKGRFKHFYSIYKKMYQKGKEFDDIYDLMGVRVIVEDK---------ATCYHVLG 277
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH + P+ G F DYI PK + YQS+HT + GP G +E+QIRT+ M + AE G+AAH
Sbjct: 278 IVHSQYTPVPGRFKDYIAVPKSNNYQSIHTTIVGPLGKFIEIQIRTKDMDDIAEEGIAAH 337
Query: 514 WLYKET 519
W YKE
Sbjct: 338 WNYKEN 343
>gi|354565208|ref|ZP_08984383.1| (p)ppGpp synthetase I, SpoT/RelA [Fischerella sp. JSC-11]
gi|353549167|gb|EHC18609.1| (p)ppGpp synthetase I, SpoT/RelA [Fischerella sp. JSC-11]
Length = 758
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 85/133 (63%), Gaps = 9/133 (6%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+S R K LYSI+ KM+R++ H++YD ALR++V + CY L +VH +
Sbjct: 256 ISGRPKHLYSIYQKMQRQNKEFHEIYDLAALRIIVQTN---------EECYRALAVVHDV 306
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
+ PI G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 307 FRPIPGRFKDYIGLPKPNRYQSLHTGVIGPWGRPLEVQIRTMEMHHVAEYGIAAHWKYKE 366
Query: 519 TGNKLQSISSMDE 531
TG +++ DE
Sbjct: 367 TGGSHTGLTASDE 379
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 106/187 (56%), Gaps = 14/187 (7%)
Query: 99 FNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILH 158
++ + +A FA + H GQ+RK+G+PY+ H I + ML G A+ + AG LH
Sbjct: 40 YDTSLICRAFEFAYQLHQGQYRKSGEPYICHPIA---VAGMLRDLGGSAAM--IAAGFLH 94
Query: 159 DVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------QLLRRHRRINVNQGTL 209
DVV+D ++ IE+ FG EV LV GV++LS IN + RR +
Sbjct: 95 DVVEDTDVTIEEIEQRFGSEVRCLVEGVTKLSKINFKSKTESQAENFRRMFLAMAQDIRV 154
Query: 210 GHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 269
+LADRLHNMRT+ +P K R A ET I+ LA+RLG+W K ELEDL F L+P
Sbjct: 155 IVVKLADRLHNMRTLEYMPEEKRRRTATETREIFAPLANRLGIWRFKWELEDLAFKYLEP 214
Query: 270 QIFRKMR 276
+ FR+++
Sbjct: 215 EAFRQIQ 221
Score = 43.1 bits (100), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 14/109 (12%)
Query: 709 TSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGE 768
T + AS + K LR +L W+ L+ +S D++ E + V P G+
Sbjct: 372 TGLTAS-DEKFTWLRQLLEWQSDLKDAQEYLESI--------KDNLFE-EDIYVFTPKGD 421
Query: 769 IMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
++ L+ GST D A + VG V VNG++V +T L++GDIVE+
Sbjct: 422 LVALKPGSTTVDFAYRIHTEVGNRCTGVRVNGRMVPLSTRLQNGDIVEI 470
>gi|421527317|ref|ZP_15973920.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Fusobacterium nucleatum ChDC F128]
gi|402256525|gb|EJU07004.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Fusobacterium nucleatum ChDC F128]
Length = 725
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 109/183 (59%), Gaps = 14/183 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
++++ A+ FA+ +H GQ+RK+GD Y+ H + +IL + K DT+VAG+LHDVV
Sbjct: 22 DKIKLALGFAEESHQGQYRKSGDDYIIHPVEVAKILMDM-----KMDTDTIVAGLLHDVV 76
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE-------- 213
+D + I+ FGD VA LV GV++L + + N+ + L E
Sbjct: 77 EDTLIPIADIKYNFGDTVATLVDGVTKLKALPNGTKNQAE-NIRKMILAMAENIRVILIK 135
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LADRLHNMRT+ + P K +++++ETL I+ LA RLG+ +K+ELED+ F+ L F
Sbjct: 136 LADRLHNMRTLKFMKPEKQQSISKETLDIYAPLAHRLGMAKIKSELEDMAFSYLHHDEFL 195
Query: 274 KMR 276
+++
Sbjct: 196 EIK 198
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 73/126 (57%), Gaps = 9/126 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K YSI+ KM +K +YD +RV+V DK CY +L
Sbjct: 227 GIKAEVKGRFKHFYSIYKKMYQKGKEFDDIYDLMGVRVIVDDK---------ATCYHVLG 277
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH + P+ G F DYI PK + YQS+HT + GP G +E+QIRT+ M + AE G+AAH
Sbjct: 278 IVHSQYTPVPGRFKDYIAVPKSNNYQSIHTTIVGPLGKFIEIQIRTKDMDDIAEEGIAAH 337
Query: 514 WLYKET 519
W YKE
Sbjct: 338 WNYKEN 343
>gi|406904851|gb|EKD46504.1| hypothetical protein ACD_67C00212G0005, partial [uncultured
bacterium]
Length = 382
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 83/126 (65%), Gaps = 9/126 (7%)
Query: 397 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 456
+ + R KS+YS+F KM++ D+ I+++YD A+R++V P + CY L IVH
Sbjct: 120 IKIDGRAKSVYSLFLKMQKHDMDINQIYDLAAVRIIV---------PEVADCYETLGIVH 170
Query: 457 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 516
+ + P+ G DYI PKP+GYQS+HT V GPDG LEVQIRT KMH AE G+AAHW+Y
Sbjct: 171 KKYRPMIGRIKDYISLPKPNGYQSIHTTVFGPDGKILEVQIRTIKMHNEAEFGIAAHWIY 230
Query: 517 KETGNK 522
E+ K
Sbjct: 231 SESKKK 236
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 213 ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL 267
+LADRLHNM+T+ PP K +A+ETL I+ +A+RLG+ +K +L+DL F L
Sbjct: 24 KLADRLHNMQTLEFNPPDKQIRIARETLEIFAPIANRLGMGEVKTQLQDLSFKYL 78
>gi|428221859|ref|YP_007106029.1| RelA/SpoT family (p)ppGpp synthetase [Synechococcus sp. PCC 7502]
gi|427995199|gb|AFY73894.1| (p)ppGpp synthetase, RelA/SpoT family [Synechococcus sp. PCC 7502]
Length = 752
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 96/175 (54%), Gaps = 21/175 (12%)
Query: 392 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 451
I G EVT R K LY I+ KM R+ ++YD A+RV+V + + CY +
Sbjct: 254 ITGFEVT--GRPKHLYGIYEKMHRQQKPYGEIYDIAAVRVIVNNTDE---------CYRI 302
Query: 452 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 511
L I H + P+ G F DYI PKP+GYQSLHTAV PDG LEVQIRT +MH AE+G+A
Sbjct: 303 LAIAHDCFRPVPGRFKDYIALPKPNGYQSLHTAVISPDGQPLEVQIRTWEMHHVAEYGIA 362
Query: 512 AHWLYKETGNKLQSISSMDESD----------IEASSSLSKDTDDHNPLDTDLFQ 556
AHW YKE+ + S ++ +D +E+ + D + L DLF
Sbjct: 363 AHWKYKESNSNPNSNGGLNNNDSEKFNWLRQMVESQKDIKDDQEYIESLKQDLFN 417
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 106/192 (55%), Gaps = 14/192 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V +A A + H GQ R +G+PY+ H I +L L S + AG LHDVV+D
Sbjct: 48 VCQAFKLAYKLHQGQTRASGEPYILHPIQVANLLRDLGGGSA-----MIAAGFLHDVVED 102
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLGHEE--------L 214
+L IE +FG EV +LV GV++LS IN + R+ N + L E L
Sbjct: 103 TSVTLAEIEAQFGAEVRQLVEGVTKLSKINFNSKTERQAENFRRMFLYMAEDIRVIVVKL 162
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHNMRT+ L P K +A+ET I+ LA+RLG+ K ELEDL F L+ + +R+
Sbjct: 163 ADRLHNMRTLEHLAPHKQVLIARETRDIFAPLANRLGIGQFKWELEDLAFKYLEAEQYRE 222
Query: 275 MRADLASMWSPR 286
M+A +A S R
Sbjct: 223 MKALVAETRSDR 234
>gi|350564067|ref|ZP_08932886.1| (p)ppGpp synthetase I, SpoT/RelA [Thioalkalimicrobium aerophilum
AL3]
gi|349778067|gb|EGZ32426.1| (p)ppGpp synthetase I, SpoT/RelA [Thioalkalimicrobium aerophilum
AL3]
Length = 726
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 93/158 (58%), Gaps = 12/158 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ ++ R K +YSI+ KM RK + +YD RALR+ V D + CY L
Sbjct: 227 GIHARVTGRPKHIYSIWKKMSRKTQRLDDLYDLRALRIYVKD---------VAECYRCLS 277
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH W I EFDDYI +PK +GYQS+HT V GP+G +E+QIRT +MH++AE+G+AAH
Sbjct: 278 LVHEQWNFIRDEFDDYITSPKDNGYQSIHTVVMGPEGKTVEIQIRTHEMHQHAEYGIAAH 337
Query: 514 WLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLD 551
W YKE G + + E+ I + L + DD D
Sbjct: 338 WKYKEGG---KGYDARLEASINSMRQLLEHRDDAEVFD 372
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 91/202 (45%), Gaps = 29/202 (14%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQL-------------LRRHRRINVNQGTLGHEELADR 217
+ + F + KL+ G+ RL+ + LR+ + + +L R
Sbjct: 80 LAKRFDPQCVKLIEGIRRLNQFKEFDPNTHSDAVQTERLRQMLLAMTSDIRMMVVKLGYR 139
Query: 218 LHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRA 277
+ +R + P + +A ET LI+ LA+RLG+ LK ELEDL F L+P +++K+ +
Sbjct: 140 VARLRNLKHEPEPVRKQIAAETQLIFAPLANRLGIAQLKWELEDLSFRFLEPDLYKKIAS 199
Query: 278 DLASMWSPR-----NRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEA 331
+LA R N + Y IT ++++ + R T +H+ S+ K +
Sbjct: 200 ELADKRVERENYIENLISY---ITQLLANAGIHARV-------TGRPKHIYSIWKKMSRK 249
Query: 332 VVPFDILSDRRKRTKFLHDLAK 353
D L D R ++ D+A+
Sbjct: 250 TQRLDDLYDLRALRIYVKDVAE 271
>gi|339448283|ref|ZP_08651839.1| (p)ppGpp synthetase I SpoT/RelA [Lactobacillus fructivorans KCTC
3543]
Length = 741
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/206 (41%), Positives = 115/206 (55%), Gaps = 19/206 (9%)
Query: 100 NDEQ-VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILH 158
ND Q ++KA FAK AH Q R +G PY+ H + IL L +T+ AG LH
Sbjct: 23 NDIQMIKKAYKFAKIAHEDQKRASGQPYINHPVEVAGILTDL-----HMDAETITAGFLH 77
Query: 159 DVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRRINV---NQGTL 209
DVV+D ++G I E FGD V+ +V GVS+LS I QL HR++ + +
Sbjct: 78 DVVEDTGATIGDITELFGDHVSLIVDGVSKLSKIKYKSSKEQLAENHRKLLLAMCKDIRV 137
Query: 210 GHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 269
+LADRLHNM T+ AL P K + +AQETL I+ LA RLG+ +K ELEDL L+P
Sbjct: 138 MIVKLADRLHNMETLDALRPDKQKRIAQETLDIYAPLADRLGIGTIKWELEDLSLRYLKP 197
Query: 270 QIFRKMRADLASMWSPRN-RVGYSRR 294
+ ++ + M S RN RV Y R
Sbjct: 198 DDYYEI---VNLMNSKRNERVAYVNR 220
Score = 119 bits (297), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 78/125 (62%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K +YSI+ KM K ++YD A+RV+V +++ CY++L
Sbjct: 233 GIKGEVYGRPKHIYSIYRKMHDKHKDFKEIYDLLAVRVIV---------KSVKDCYAVLG 283
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+H W P F DYI PKP+ YQSLHT V GP+G LE+QIRT++MH AE+G+AAH
Sbjct: 284 AIHTEWKPFPDRFKDYIAMPKPNMYQSLHTTVVGPEGKPLEIQIRTEEMHRIAEYGVAAH 343
Query: 514 WLYKE 518
W YKE
Sbjct: 344 WAYKE 348
>gi|427392523|ref|ZP_18886528.1| RelA/SpoT family protein [Alloiococcus otitis ATCC 51267]
gi|425731484|gb|EKU94302.1| RelA/SpoT family protein [Alloiococcus otitis ATCC 51267]
Length = 736
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 101/172 (58%), Gaps = 23/172 (13%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+E ++ R K +YSI+ KM+ + ++YD A+RV+V P+I+ CY++L
Sbjct: 234 IEANITGRPKHIYSIYRKMKNQKKQFGEIYDLLAIRVIV---------PSIKDCYAVLGA 284
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
+H W P+ G F DYI PK + YQSLHT V GPD + LEVQIRTQ+MHE AE+G+AAHW
Sbjct: 285 IHTRWKPMPGRFKDYIAMPKANMYQSLHTTVLGPDATPLEVQIRTQQMHEVAEYGVAAHW 344
Query: 515 LYKETGNKLQSISSMDESD----------IEASSSLSKDTDDHNPLDTDLFQ 556
YKE K Q + ++SD IE + + +D + + D+FQ
Sbjct: 345 AYKE--GKTQKVK--EDSDNKQLSWFRDIIELQTESNNASDFMDSIKEDIFQ 392
Score = 110 bits (274), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 99/194 (51%), Gaps = 14/194 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V++A A+ AH GQ RK+ + Y+TH + ILA + K TV G LHDV++D
Sbjct: 28 VKRAYDVAEEAHRGQMRKSQEEYITHPVQVAAILAEI-----KMDPVTVATGFLHDVIED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYIN-QLLRRHRRINVNQGTLGHEE--------L 214
S I E F +VA LV GVS+L + H+ N + L + L
Sbjct: 83 TLYSYDDIAEMFNPKVADLVDGVSKLGKFKFKSKEEHQAENHRKMLLAMAKDVRVVLVKL 142
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHNMRT+ P K R +A+ETL I+ LA RLG+ +K ELED + PQ + +
Sbjct: 143 ADRLHNMRTLKYHRPEKQREIARETLEIYAPLADRLGISRIKWELEDTALRYINPQQYYR 202
Query: 275 MRADLASMWSPRNR 288
+ + S R R
Sbjct: 203 IVHLMKSRREDRER 216
>gi|339499056|ref|YP_004697091.1| (p)ppGpp synthetase I SpoT/RelA [Spirochaeta caldaria DSM 7334]
gi|338833405|gb|AEJ18583.1| (p)ppGpp synthetase I, SpoT/RelA [Spirochaeta caldaria DSM 7334]
Length = 678
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 90/136 (66%), Gaps = 9/136 (6%)
Query: 383 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 442
+E +++ + G+EV +++R K YSI+ KMR+++ G +++D +R++
Sbjct: 217 QEAILTETQKLGIEVVVNARAKHFYSIYQKMRKRNKGPEELFDLFGIRILCN-------- 268
Query: 443 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 502
+ CY+L+ VH LW PI+G F DYI PK +GYQSLHT V DG LE+QIRT++M
Sbjct: 269 -TVDDCYTLVGTVHHLWKPIEGRFKDYIAMPKSNGYQSLHTTVMSFDGKLLEIQIRTKEM 327
Query: 503 HEYAEHGLAAHWLYKE 518
H+ AE+G+A+HWLYK+
Sbjct: 328 HQIAEYGVASHWLYKK 343
Score = 106 bits (265), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 112/205 (54%), Gaps = 16/205 (7%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
+ E++ A+ +A+ H Q R +G+PY H + IL L K DT+ A +LHD
Sbjct: 19 DQEKILAALEWAQSLHQDQKRASGEPYFIHPLGVASILVDL-----KLDADTISAALLHD 73
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYI---NQLLRRHRRINVNQGTLGHE---- 212
V++D + +IE++F +V KLV GV++++ I N+ L+ I + +
Sbjct: 74 VLEDTATTGEAIEQKFNKDVRKLVEGVTKIADIHAKNKTLQEAENIRKMLFAMVQDIRVI 133
Query: 213 --ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
+LAD+LHNMRT+ LPP + +A AQ+ L I+ LA RLG+ +K ELEDL L
Sbjct: 134 LIKLADKLHNMRTLDYLPPERRKANAQDCLDIYAPLADRLGISWIKDELEDLSLKHLNRD 193
Query: 271 IFRKMRADLASMWSPRNRVGYSRRI 295
++ +++ +A ++R + R+
Sbjct: 194 VYDQIKGIVA--LKKKDRESFLNRV 216
>gi|427717556|ref|YP_007065550.1| (p)ppGpp synthetase I SpoT/RelA [Calothrix sp. PCC 7507]
gi|427349992|gb|AFY32716.1| (p)ppGpp synthetase I, SpoT/RelA [Calothrix sp. PCC 7507]
Length = 756
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 109/192 (56%), Gaps = 14/192 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ +A FA R H GQ+RK+G+PY+ H + +L L S+ + AG LHDVV+D
Sbjct: 44 IGEAFKFAYRLHQGQYRKSGEPYICHPVAVAGLLRDLGGSAA-----MIAAGFLHDVVED 98
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------QLLRRHRRINVNQGTLGHEEL 214
++ I E FG EV +LV GV++LS IN + RR + +L
Sbjct: 99 TDVTIEQIGELFGPEVRQLVEGVTKLSKINFKSKTESQAENFRRMFLSMAQDIRVIVVKL 158
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHNMRT+ +P K R +AQET I+ LA+RLG+W K ELEDL F L+P+ FR+
Sbjct: 159 ADRLHNMRTLQVMPDDKRRRIAQETRDIFAPLANRLGIWHFKWELEDLSFKYLEPESFRE 218
Query: 275 MRADLASMWSPR 286
++ +A + R
Sbjct: 219 IQQHVAEKRTSR 230
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 89/141 (63%), Gaps = 12/141 (8%)
Query: 394 GME-VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLL 452
G+E + +S R K LYSI+ KM+R+ H++YD ALR++V + CY L
Sbjct: 249 GIECLDVSGRPKHLYSIYQKMQRQQKEFHEIYDLAALRIIVRTN---------EECYRAL 299
Query: 453 DIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAA 512
+VH + PI G F DYI PKP+ YQSLHT V G G LEVQIRTQ+MH AE+G+AA
Sbjct: 300 AVVHDAFRPIPGRFKDYIGLPKPNRYQSLHTGVIGLTGRPLEVQIRTQEMHHIAEYGIAA 359
Query: 513 HWLYKETGNKLQSISSMDESD 533
HW YKETG ++S++ SD
Sbjct: 360 HWKYKETGGS--NVSNLTTSD 378
>gi|225593179|gb|ACN96096.1| (p)ppGpp synthetase I [Fischerella sp. MV11]
Length = 758
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 85/133 (63%), Gaps = 9/133 (6%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+S R K LYSI+ KM+R++ H++YD ALR++V + CY L +VH +
Sbjct: 255 ISGRPKHLYSIYQKMQRQNKEFHEIYDLAALRIIVQTN---------EECYRALAVVHDV 305
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
+ PI G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 306 FRPIPGRFKDYIGLPKPNRYQSLHTGVIGPWGRPLEVQIRTMEMHHVAEYGIAAHWKYKE 365
Query: 519 TGNKLQSISSMDE 531
TG +++ DE
Sbjct: 366 TGGSHTGLTASDE 378
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 106/187 (56%), Gaps = 14/187 (7%)
Query: 99 FNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILH 158
++ + +A FA + H GQ+RK+G+PY+ H I + ML G A+ + AG LH
Sbjct: 39 YDTSLICRAFEFAYQLHQGQYRKSGEPYICHPIA---VAGMLRDLGGSAAM--IAAGFLH 93
Query: 159 DVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------QLLRRHRRINVNQGTL 209
DVV+D ++ IE+ FG EV LV GV++LS IN + RR +
Sbjct: 94 DVVEDTDVTIEEIEQRFGSEVRCLVEGVTKLSKINFKSKTESQAENFRRMFLAMAQDIRV 153
Query: 210 GHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 269
+LADRLHNMRT+ +P K R A ET I+ LA+RLG+W K ELEDL F L+P
Sbjct: 154 IVVKLADRLHNMRTLEYMPDEKRRRTATETREIFAPLANRLGIWRFKWELEDLAFKYLEP 213
Query: 270 QIFRKMR 276
+ FR+++
Sbjct: 214 EAFRQIQ 220
Score = 43.5 bits (101), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 14/109 (12%)
Query: 709 TSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGE 768
T + AS + K LR +L W+ L+ +S D++ E + V P G+
Sbjct: 371 TGLTAS-DEKFTWLRQLLEWQSDLKDAQEYLESI--------KDNLFE-EDIYVFTPKGD 420
Query: 769 IMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
++ L+ GST D A + VG V VNG++V +T L++GDIVE+
Sbjct: 421 LVALKPGSTTVDFAYRIHTEVGNRCTGVRVNGRMVPLSTRLQNGDIVEI 469
>gi|257866975|ref|ZP_05646628.1| RelA/SpoT protein [Enterococcus casseliflavus EC30]
gi|257873309|ref|ZP_05652962.1| RelA/SpoT protein [Enterococcus casseliflavus EC10]
gi|257877051|ref|ZP_05656704.1| RelA/SpoT protein [Enterococcus casseliflavus EC20]
gi|257801031|gb|EEV29961.1| RelA/SpoT protein [Enterococcus casseliflavus EC30]
gi|257807473|gb|EEV36295.1| RelA/SpoT protein [Enterococcus casseliflavus EC10]
gi|257811217|gb|EEV40037.1| RelA/SpoT protein [Enterococcus casseliflavus EC20]
Length = 736
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/181 (42%), Positives = 106/181 (58%), Gaps = 14/181 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
VQKA+ +A AH QFRK+G+PY+ H I ILA L + TV G LHDVV+D
Sbjct: 28 VQKALDYATEAHKEQFRKSGEPYIIHPIQVAGILAEL-----QMDPHTVATGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRL------SYINQLLRRHRRINVNQGT---LGHEEL 214
+L ++EEFG +VA LV GV++L S+ QL HR++ + + +L
Sbjct: 83 TDVTLADLKEEFGADVAMLVDGVTKLGKIKYKSHEEQLAENHRKMLIAMAQDLRVIMVKL 142
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHNMRT+ L K R +AQET+ I+ LA RLG+ +K ELED+ L PQ + +
Sbjct: 143 ADRLHNMRTLKHLREDKQRRIAQETMEIYAPLAHRLGISRIKWELEDISLRYLNPQQYYR 202
Query: 275 M 275
+
Sbjct: 203 I 203
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 77/120 (64%), Gaps = 9/120 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+ R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L +H
Sbjct: 238 IYGRPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLGTIHTK 288
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W P+ G F DYI PK + YQSLHT V GP G+ +E+QIRT +MHE AE G+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKANMYQSLHTTVIGPKGNPVEIQIRTHEMHEIAEFGVAAHWAYKE 348
>gi|392546687|ref|ZP_10293824.1| bifunctional: (p)ppGpp synthetase II; guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Pseudoalteromonas
rubra ATCC 29570]
Length = 700
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 137/249 (55%), Gaps = 20/249 (8%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E VQKA A+ AH GQ R +G+PY+TH + +ILA S K +T++A ++HDV+
Sbjct: 21 ELVQKAYVVAREAHEGQTRSSGEPYITHPVEVTQILA-----SMKLDHETLMAALMHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYIN-QLLRRHRRINVNQGTLGHEE------- 213
+D S + E FGD VA+LVAGVS+L ++ + + + N + + +
Sbjct: 76 EDTDFSQTDLAEIFGDTVAELVAGVSKLDKLDFKDKKEFQAENYRKMIMAMTQDIRVILI 135
Query: 214 -LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 272
LADR HNMRT+ L P K R +A+ETL I+ +A+RLG+ +K ELEDL FA L P
Sbjct: 136 KLADRTHNMRTLGFLRPEKRRRIARETLEIFAPIANRLGIHDIKNELEDLGFAALYPMRH 195
Query: 273 RKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEA 331
R +++++A R V I+ I S A D S + ++H+ S+ K +L
Sbjct: 196 RALKSEVAKARGNRKEV-----ISNIQSEIESRLEEAGIDASVSGREKHLYSIYKKMLNK 250
Query: 332 VVPFDILSD 340
+ F+ + D
Sbjct: 251 ELLFNEVMD 259
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 81/128 (63%), Gaps = 9/128 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ ++S R K LYSI+ KM K++ ++V D A R+ V +I CY +L
Sbjct: 228 GIDASVSGREKHLYSIYKKMLNKELLFNEVMDIYAFRINVN---------SIDTCYRVLG 278
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+ H L+ PI+ F DYI PK +GYQSLHT++ GP G +E+QIRT M A+ G+AAH
Sbjct: 279 VAHNLYKPIETRFKDYIAVPKTNGYQSLHTSLVGPHGIPVEIQIRTHDMDHMADKGVAAH 338
Query: 514 WLYKETGN 521
W+YK++G+
Sbjct: 339 WMYKKSGD 346
>gi|57233675|ref|YP_180760.1| GTP pyrophosphokinase [Dehalococcoides ethenogenes 195]
gi|57224123|gb|AAW39180.1| GTP pyrophosphokinase [Dehalococcoides ethenogenes 195]
Length = 728
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/132 (50%), Positives = 82/132 (62%), Gaps = 12/132 (9%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRR---KDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYS 450
G++V LS R K LYSI+ KM + + +YD ALRV+V D I CY
Sbjct: 238 GLKVELSGRPKHLYSIYQKMEKYASQGKQFEDIYDVLALRVLVND---------IPDCYH 288
Query: 451 LLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGL 510
+ IVH LW PI G FDDYI NPKP+GYQSLHTAV + LEVQ+RT +MH AE+G+
Sbjct: 289 AIGIVHSLWHPIPGAFDDYIANPKPNGYQSLHTAVMSLGTTPLEVQVRTYQMHHIAEYGV 348
Query: 511 AAHWLYKETGNK 522
AAHW YK G +
Sbjct: 349 AAHWRYKTAGKE 360
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 113/207 (54%), Gaps = 27/207 (13%)
Query: 115 HHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEE 174
H GQ RK+G+P++ H ++ LA L S T+ A +LHDV +DA SL IE++
Sbjct: 33 HTGQMRKSGEPFIEHPLNVAITLADLQLDSA-----TLAAALLHDVPEDAHISLEQIEKK 87
Query: 175 FGDEVAKLVAGVSRLSYI--------------NQLLRRHRRINVNQGTLGHE------EL 214
FG +VAKLV GV++LS + N LR+ + + + +L
Sbjct: 88 FGADVAKLVDGVTKLSKLALGPGIEDARRPGGNASLRQAENLRKMLVAMSEDLRVVFIKL 147
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADR HNMRT+ AL K R++A+ET+ I+ LA RLG+W LK +LEDL F L P+ +R+
Sbjct: 148 ADRFHNMRTLQALSAEKRRSIAKETMEIYAPLAHRLGIWELKWQLEDLAFRYLDPRHYRQ 207
Query: 275 MRADLASMWSPRNRVGYSRRITTIVSS 301
+ + S + R Y ++ I+ S
Sbjct: 208 VANLVDSKLAQRK--NYIEHVSAILQS 232
>gi|254303921|ref|ZP_04971279.1| guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [Fusobacterium
nucleatum subsp. polymorphum ATCC 10953]
gi|22087659|gb|AAM90994.1|AF525504_1 ppGpp [Fusobacterium nucleatum]
gi|148324113|gb|EDK89363.1| guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [Fusobacterium
nucleatum subsp. polymorphum ATCC 10953]
Length = 725
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 109/183 (59%), Gaps = 14/183 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
++++ A+ FA+ +H GQ+RK+GD Y+ H + +IL + K DT+VAG+LHDVV
Sbjct: 22 DKIKLALGFAEESHQGQYRKSGDDYIIHPVEVAKILMDM-----KMDTDTIVAGLLHDVV 76
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE-------- 213
+D + I+ FGD VA LV GV++L + + N+ + L E
Sbjct: 77 EDTLIPIADIKYNFGDTVATLVDGVTKLKALPNGTKNQAE-NIRKMILAMAENIRVILIK 135
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LADRLHNMRT+ + P K +++++ETL I+ LA RLG+ +K+ELED+ F+ L F
Sbjct: 136 LADRLHNMRTLKFMKPEKQQSISKETLDIYAPLAHRLGMAKIKSELEDIAFSYLHHDEFL 195
Query: 274 KMR 276
+++
Sbjct: 196 EIK 198
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 73/126 (57%), Gaps = 9/126 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K YSI+ KM +K +YD +RV+V DK CY +L
Sbjct: 227 GIKAEVKGRFKHFYSIYKKMYQKGKEFDDIYDLMGVRVIVEDK---------ATCYHVLG 277
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH + P+ G F DYI PK + YQS+HT + GP G +E+QIRT+ M + AE G+AAH
Sbjct: 278 IVHSQYTPVPGRFKDYIAVPKSNNYQSIHTTIVGPLGKFIEIQIRTKDMDDIAEEGIAAH 337
Query: 514 WLYKET 519
W YKE
Sbjct: 338 WNYKEN 343
>gi|325568309|ref|ZP_08144676.1| GTP diphosphokinase [Enterococcus casseliflavus ATCC 12755]
gi|420264623|ref|ZP_14767252.1| GTP diphosphokinase [Enterococcus sp. C1]
gi|325158078|gb|EGC70231.1| GTP diphosphokinase [Enterococcus casseliflavus ATCC 12755]
gi|394767937|gb|EJF48167.1| GTP diphosphokinase [Enterococcus sp. C1]
Length = 736
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/181 (42%), Positives = 106/181 (58%), Gaps = 14/181 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
VQKA+ +A AH QFRK+G+PY+ H I ILA L + TV G LHDVV+D
Sbjct: 28 VQKALDYATEAHKEQFRKSGEPYIIHPIQVAGILAEL-----QMDPHTVATGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRL------SYINQLLRRHRRINVNQGT---LGHEEL 214
+L ++EEFG +VA LV GV++L S+ QL HR++ + + +L
Sbjct: 83 TDVTLADLKEEFGADVAMLVDGVTKLGKIKYKSHEEQLAENHRKMLIAMAQDLRVIMVKL 142
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHNMRT+ L K R +AQET+ I+ LA RLG+ +K ELED+ L PQ + +
Sbjct: 143 ADRLHNMRTLKHLREDKQRRIAQETMEIYAPLAHRLGISRIKWELEDISLRYLNPQQYYR 202
Query: 275 M 275
+
Sbjct: 203 I 203
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 77/120 (64%), Gaps = 9/120 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+ R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L +H
Sbjct: 238 IYGRPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLGTIHTK 288
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W P+ G F DYI PK + YQSLHT V GP G+ +E+QIRT +MHE AE G+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKANMYQSLHTTVIGPKGNPVEIQIRTHEMHEIAEFGVAAHWAYKE 348
>gi|350570797|ref|ZP_08939143.1| GTP diphosphokinase [Neisseria wadsworthii 9715]
gi|349794745|gb|EGZ48555.1| GTP diphosphokinase [Neisseria wadsworthii 9715]
Length = 736
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/122 (49%), Positives = 81/122 (66%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K +G +YD RA+R++V + CY+ L IVH L
Sbjct: 257 VAGRPKHIYSIYKKMVKKKLGFEGLYDIRAVRILVD---------TVPECYTTLGIVHSL 307
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI PK +GY+SLHT + GP+ +EVQIRT +MH++ E G+AAHW YKE
Sbjct: 308 WQPIPGEFDDYIAYPKANGYKSLHTVIVGPEDKGVEVQIRTFEMHQFNEFGVAAHWRYKE 367
Query: 519 TG 520
G
Sbjct: 368 GG 369
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 132 HTGRIL------AMLIPSSGKRAVDTVVAGILHDVVDDACESLGS-IEEEFGDEVAKLVA 184
HTG +L A + S D V A IL D+ CE+ + E G ++ LV
Sbjct: 54 HTGELLISNLLGAAQMVSEMDLLPDAVAATILTDI-SSFCENWQEKVTETCGKQICDLVK 112
Query: 185 GVSRLSYINQL------------------LRRHRRINVNQGTLGHEELADRLHNMRTIYA 226
G+ + + +R+ V+ + +LA R M+ +
Sbjct: 113 GIDEIQKLTHFAKVDNLATPEERAEQAETMRKMLLAMVSDIRVVLIKLALRTRTMQYLCR 172
Query: 227 LPPA-KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
LP + K RA+A+ETL I+ LA+RLG+W LK +LEDL F P+ ++++
Sbjct: 173 LPDSEKKRAIAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQDPEKYKEI 222
>gi|399050755|ref|ZP_10740799.1| (p)ppGpp synthetase, RelA/SpoT family [Brevibacillus sp. CF112]
gi|433545167|ref|ZP_20501527.1| GTP pyrophosphokinase [Brevibacillus agri BAB-2500]
gi|398051471|gb|EJL43793.1| (p)ppGpp synthetase, RelA/SpoT family [Brevibacillus sp. CF112]
gi|432183556|gb|ELK41097.1| GTP pyrophosphokinase [Brevibacillus agri BAB-2500]
Length = 723
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 84/131 (64%), Gaps = 9/131 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
+E +S R K +YSIF KM +++ +++YD ALR++V D I+ CY++L
Sbjct: 229 NIEAEISGRPKHIYSIFKKMTKQNKQFNEIYDLLALRIIVND---------IRDCYAVLG 279
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW P+ G F DYI PK + YQSLHT V GP G LEVQIRT MH+ AE G+AAH
Sbjct: 280 IVHTLWKPMPGRFKDYIAMPKTNMYQSLHTTVIGPKGEPLEVQIRTWDMHQTAEIGIAAH 339
Query: 514 WLYKETGNKLQ 524
W YKE + +Q
Sbjct: 340 WAYKEGKSVVQ 350
Score = 119 bits (297), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 102/181 (56%), Gaps = 14/181 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ +A A++AH GQ RK+G PY+ H I ILA L + T+ AG LHDVV+D
Sbjct: 24 ITRAYQLAEKAHEGQIRKSGVPYIMHPIAVAGILANLHMDAV-----TIAAGFLHDVVED 78
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRRINVNQGT---LGHEEL 214
+L + E+FG +VA LV GV++L I QL HR++ V + +L
Sbjct: 79 TDVTLDDLREQFGPDVALLVDGVTKLEKIKYKSKEEQLAENHRKMLVAMAQDIRVIMIKL 138
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHNMRT+ + K R ++ ETL I+ LA RLG+ ++K ELED L PQ + +
Sbjct: 139 ADRLHNMRTLRHMSEEKQREISDETLEIFAPLAHRLGIASVKWELEDTALRYLNPQQYYR 198
Query: 275 M 275
+
Sbjct: 199 I 199
>gi|326503772|dbj|BAJ86392.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 720
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 117/200 (58%), Gaps = 19/200 (9%)
Query: 98 IFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGIL 157
IF++E V KA A++AHHGQ R +GDP+L HC+ T +LA + S+ V AG+L
Sbjct: 213 IFHEELVVKAFFEAEKAHHGQTRASGDPFLQHCVETAVLLAKIGASA-----TVVSAGLL 267
Query: 158 HDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHR---------RINVNQGT 208
HD +DD+ I FG VA LV GVS+LS++++L R + R++
Sbjct: 268 HDTIDDSFVDYDHIFHMFGAGVADLVEGVSKLSHLSKLARDNNTASRTAEADRLHTMLLA 327
Query: 209 LGHE-----ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLC 263
+ +LADR+HNMRT+ ALP K + A+ET+ I+ LA+RLG+ + K +LE+LC
Sbjct: 328 MADARAVLIKLADRVHNMRTLEALPLVKQQRFAKETMEIFVPLANRLGIASWKDQLENLC 387
Query: 264 FAVLQPQIFRKMRADLASMW 283
F L P+ +++ + A +
Sbjct: 388 FKHLNPEEHKELSSKFAETF 407
Score = 119 bits (298), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 60/121 (49%), Positives = 80/121 (66%), Gaps = 9/121 (7%)
Query: 398 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 457
LS R K+LYS++SKM++K++ + +V+D LR+VV DK + CY LD+VH+
Sbjct: 432 NLSGRNKNLYSVYSKMQKKNLTMDEVHDIHGLRLVV-DKE--------EDCYRALDVVHK 482
Query: 458 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 517
LW +DG F DYI PK +GY+SLHT V EVQIRT++MH AE+G AAHW YK
Sbjct: 483 LWPQVDGRFKDYISLPKLNGYRSLHTVVMSDGDHTFEVQIRTKEMHLQAEYGFAAHWRYK 542
Query: 518 E 518
E
Sbjct: 543 E 543
>gi|150390117|ref|YP_001320166.1| (p)ppGpp synthetase I SpoT/RelA [Alkaliphilus metalliredigens QYMF]
gi|149949979|gb|ABR48507.1| (p)ppGpp synthetase I, SpoT/RelA [Alkaliphilus metalliredigens
QYMF]
Length = 727
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 88/140 (62%), Gaps = 13/140 (9%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+E +S R K YSI+ KM ++ +++D A RV+V + ++ CY +L
Sbjct: 226 GIENEISGRPKHFYSIYRKMVYQNKSFDEIFDFIAFRVIVNN---------VKDCYGILG 276
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW PI G F DYI PKP+ YQSLHT V GP+G E+QIRT++MH+ AE G+AAH
Sbjct: 277 IVHTLWKPIPGRFKDYIAMPKPNMYQSLHTTVIGPNGEPFEIQIRTKEMHQIAEFGIAAH 336
Query: 514 WLYKETGNKLQSISSMDESD 533
W YKE +SI++ D+ D
Sbjct: 337 WSYKEG----KSINNEDDMD 352
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 116/212 (54%), Gaps = 16/212 (7%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P + E + +A + + AH GQ+RK+G+ Y H + +IL L S T+ AG+
Sbjct: 14 PQCDAELIIRAYHYGENAHQGQYRKSGEQYFIHPVEVAKILIELKMDSS-----TIAAGL 68
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLGHEE-- 213
LHDV++D G + EEFG+EVA+LV GV++L+ ++ + R+ N+ + + +
Sbjct: 69 LHDVIEDTPYGYGKVREEFGEEVAELVEGVTKLTRLSFESKEERQAENLRKMFIAMAKDI 128
Query: 214 ------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL 267
LADRLHNMRT+ K + A ETL I+ +A RLG+ +K ELEDLC +
Sbjct: 129 RVVLIKLADRLHNMRTLKYQSDEKKKEKAMETLEIFAPIAHRLGISRIKWELEDLCLLYI 188
Query: 268 QPQIFRKMRADLASMWSPRNRVGYSRRITTIV 299
P+ + + +A R+R + ++ +I+
Sbjct: 189 DPEGYYDLVDKVAK--KRRDRETFINKVISIL 218
Score = 40.0 bits (92), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 15/107 (14%)
Query: 712 EASINNKVRLLRTMLRWEEQLRSEASLRQS-KLGGKANGNPDSVVPGEVVIVCWPNGEIM 770
E ++ K+ LR ML WE+ + S K+ N V V P GE++
Sbjct: 348 EDDMDTKLTWLRQMLEWEKDTKDPKEFMASLKVDLYTNE----------VFVFTPKGEVI 397
Query: 771 RLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
L SGST D A K VG + V+ ++V + +LK+G+IVE+
Sbjct: 398 NLPSGSTPIDFAYKIHSDVGNKCVGAKVDSRMVPIDYKLKNGNIVEI 444
>gi|326505464|dbj|BAJ95403.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 720
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 117/200 (58%), Gaps = 19/200 (9%)
Query: 98 IFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGIL 157
IF++E V KA A++AHHGQ R +GDP+L HC+ T +LA + S+ V AG+L
Sbjct: 213 IFHEELVVKAFFEAEKAHHGQTRASGDPFLQHCVETAVLLAKIGASA-----TVVSAGLL 267
Query: 158 HDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHR---------RINVNQGT 208
HD +DD+ I FG VA LV GVS+LS++++L R + R++
Sbjct: 268 HDTIDDSFVDYDHIFHMFGAGVADLVEGVSKLSHLSKLARDNNTASRTAEADRLHTMLLA 327
Query: 209 LGHE-----ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLC 263
+ +LADR+HNMRT+ ALP K + A+ET+ I+ LA+RLG+ + K +LE+LC
Sbjct: 328 MADARAVLIKLADRVHNMRTLEALPLVKQQRFAKETMEIFVPLANRLGIASWKDQLENLC 387
Query: 264 FAVLQPQIFRKMRADLASMW 283
F L P+ +++ + A +
Sbjct: 388 FKHLNPEEHKELSSKFAETF 407
Score = 119 bits (298), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 60/121 (49%), Positives = 80/121 (66%), Gaps = 9/121 (7%)
Query: 398 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 457
LS R K+LYS++SKM++K++ + +V+D LR+VV DK + CY LD+VH+
Sbjct: 432 NLSGRNKNLYSVYSKMQKKNLTMDEVHDIHGLRLVV-DKE--------EDCYRALDVVHK 482
Query: 458 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 517
LW +DG F DYI PK +GY+SLHT V EVQIRT++MH AE+G AAHW YK
Sbjct: 483 LWPQVDGRFKDYISLPKLNGYRSLHTVVMSDGDHTFEVQIRTKEMHLQAEYGFAAHWRYK 542
Query: 518 E 518
E
Sbjct: 543 E 543
>gi|237743935|ref|ZP_04574416.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Fusobacterium sp. 7_1]
gi|289765417|ref|ZP_06524795.1| hypothetical protein PSAG_01019 [Fusobacterium sp. D11]
gi|336419052|ref|ZP_08599319.1| GTP diphosphokinase [Fusobacterium sp. 11_3_2]
gi|423138132|ref|ZP_17125775.1| RelA/SpoT family protein [Fusobacterium nucleatum subsp. animalis
F0419]
gi|229432966|gb|EEO43178.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Fusobacterium sp. 7_1]
gi|289716972|gb|EFD80984.1| hypothetical protein PSAG_01019 [Fusobacterium sp. D11]
gi|336164057|gb|EGN66969.1| GTP diphosphokinase [Fusobacterium sp. 11_3_2]
gi|371958694|gb|EHO76403.1| RelA/SpoT family protein [Fusobacterium nucleatum subsp. animalis
F0419]
Length = 724
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 109/183 (59%), Gaps = 14/183 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
++++ A+ FA+ +H GQ+RK+GD Y+ H + +IL + K DT+VAG+LHDVV
Sbjct: 21 DKIKLALGFAEESHQGQYRKSGDDYIVHPVEVAKILMDM-----KMDTDTIVAGLLHDVV 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE-------- 213
+D + I+ FGD VA LV GV++L + + N+ + L E
Sbjct: 76 EDTLIPIADIKYNFGDTVATLVDGVTKLKALPNGTKNQAE-NIRKMILAMAENIRVILIK 134
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LADRLHNMRT+ + P K +++++ETL I+ LA RLG+ +K+ELED+ F+ L F
Sbjct: 135 LADRLHNMRTLKFMKPEKQQSISKETLDIYAPLAHRLGMAKVKSELEDIAFSYLHHDEFL 194
Query: 274 KMR 276
+++
Sbjct: 195 EIK 197
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 73/126 (57%), Gaps = 9/126 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K YSI+ KM +K +YD +RV+V DK CY +L
Sbjct: 226 GIKAEVKGRFKHFYSIYRKMYQKGKDFDDIYDLMGVRVIVEDK---------ATCYHVLG 276
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH + P+ G F DYI PK + YQS+HT + GP G +E+QIRT+ M + AE G+AAH
Sbjct: 277 IVHSQYTPVPGRFKDYIAVPKSNNYQSIHTTIVGPLGKFIEIQIRTKDMDDIAEEGIAAH 336
Query: 514 WLYKET 519
W YKE
Sbjct: 337 WNYKEN 342
>gi|410449683|ref|ZP_11303736.1| putative GTP diphosphokinase [Leptospira sp. Fiocruz LV3954]
gi|418743759|ref|ZP_13300118.1| putative GTP diphosphokinase [Leptospira santarosai str. CBC379]
gi|418751581|ref|ZP_13307865.1| putative GTP diphosphokinase [Leptospira santarosai str. MOR084]
gi|409968054|gb|EKO35867.1| putative GTP diphosphokinase [Leptospira santarosai str. MOR084]
gi|410016440|gb|EKO78519.1| putative GTP diphosphokinase [Leptospira sp. Fiocruz LV3954]
gi|410795154|gb|EKR93051.1| putative GTP diphosphokinase [Leptospira santarosai str. CBC379]
gi|456874475|gb|EMF89768.1| putative GTP diphosphokinase [Leptospira santarosai str. ST188]
Length = 674
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW PI G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPIPGRFKDYIATPKTNLYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 515 LYKE 518
+YKE
Sbjct: 346 MYKE 349
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 113/196 (57%), Gaps = 18/196 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E V KA ++RAH GQFR +G+PY+ H + G IL L +D + AG+LHD
Sbjct: 27 ESVLKAYNVSERAHQGQFRLSGEPYIVHPLQVGFILYEL-------GLDEKVICAGLLHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------QLLRRHRRINVNQGTLG 210
V++D S + +FG+++ LV GV+++S I + +R+ + +
Sbjct: 80 VIEDTQYSRDDMIRDFGEDITDLVEGVTKISKIKSQSKETEAAENIRKIIVATIKDIRVI 139
Query: 211 HEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
+LAD+ HNMRT+ P K R +AQETL ++ +A RLG++ +K+ELEDL F VL P+
Sbjct: 140 LIKLADKTHNMRTLSFQLPEKQRRIAQETLSLYAPIAGRLGIYKIKSELEDLAFQVLNPE 199
Query: 271 IFRKMRADLASMWSPR 286
+++++ ++ S S R
Sbjct: 200 EYQEVKKNINSKKSER 215
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 760 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|288942359|ref|YP_003444599.1| (p)ppGpp synthetase I SpoT/RelA [Allochromatium vinosum DSM 180]
gi|288897731|gb|ADC63567.1| (p)ppGpp synthetase I, SpoT/RelA [Allochromatium vinosum DSM 180]
Length = 743
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/125 (50%), Positives = 85/125 (68%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ ++ R K +YSI+ KM+RK+V I ++D RA+R++V ++ CY+ L
Sbjct: 251 GIGAEITGRPKHIYSIWKKMQRKNVDIADIFDLRAVRILVD---------SVADCYAALG 301
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW I EFDDYI PK + YQSLHTAV+GP+ ALEVQIRT MH++AE G+AAH
Sbjct: 302 VVHGLWRHIPKEFDDYIATPKGNFYQSLHTAVEGPEAKALEVQIRTHAMHQHAEFGVAAH 361
Query: 514 WLYKE 518
W YKE
Sbjct: 362 WAYKE 366
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 98/205 (47%), Gaps = 22/205 (10%)
Query: 94 TGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVV 153
T YP+ + +A R TG+ + H + T ILA L + +T+V
Sbjct: 28 TQYPVDERACLARACEVLARCRGEPRPDTGETPIRHGLSTADILARL-----RMDHETLV 82
Query: 154 AGILHDVVDDACESL--GSIEEEFGDEVAKLVAGVSRL-------SYINQLLRRHRRINV 204
A +L +D + L ++ E FG +A++V ++R+ + I + N+
Sbjct: 83 AALLKGCLDWSGGELTEAALLEGFGPGIARMVDDLARIDQLANVEAVITAKDQPQHEENL 142
Query: 205 NQGTLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 256
+ LG E LA+R+H MR I L P + +A++T ++ LA+RLG+W +K
Sbjct: 143 RRLLLGIAEDVRVVLVVLAERVHLMRAIKDLEPERRTKIARDTQRVYAPLANRLGIWQIK 202
Query: 257 AELEDLCFAVLQPQIFRKMRADLAS 281
ELEDL LQP+ +R++ LA
Sbjct: 203 WELEDLSLRYLQPEEYRRIAKLLAE 227
>gi|421111743|ref|ZP_15572216.1| putative GTP diphosphokinase [Leptospira santarosai str. JET]
gi|410802939|gb|EKS09084.1| putative GTP diphosphokinase [Leptospira santarosai str. JET]
Length = 674
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW PI G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPIPGRFKDYIATPKTNLYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 515 LYKE 518
+YKE
Sbjct: 346 MYKE 349
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 114/196 (58%), Gaps = 18/196 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E VQKA ++RAH GQFR +G+PY+ H + G IL L +D + AG+LHD
Sbjct: 27 ESVQKAYNVSERAHQGQFRLSGEPYIVHPLQVGFILYEL-------GLDEKVICAGLLHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------QLLRRHRRINVNQGTLG 210
V++D S + +FG+++ LV GV+++S I + +R+ + +
Sbjct: 80 VIEDTQYSRDDMIRDFGEDITDLVEGVTKISKIKSQSKETEAAENIRKIIVATIKDIRVI 139
Query: 211 HEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
+LAD+ HNMRT+ P K R +AQETL ++ +A RLG++ +K+ELEDL F VL P+
Sbjct: 140 LIKLADKTHNMRTLSFQLPEKQRRIAQETLSLYAPIAGRLGIYKIKSELEDLAFQVLNPE 199
Query: 271 IFRKMRADLASMWSPR 286
+++++ ++ S S R
Sbjct: 200 EYQEVKKNINSKKSER 215
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 760 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|357148012|ref|XP_003574588.1| PREDICTED: GTP pyrophosphokinase-like [Brachypodium distachyon]
Length = 711
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 115/196 (58%), Gaps = 19/196 (9%)
Query: 98 IFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGIL 157
IF+DE V KA A++AH GQ R +GDPYL HC+ T +LA + G A V AG+L
Sbjct: 208 IFHDELVVKAFFEAEKAHRGQTRASGDPYLQHCVETAVLLAKI----GANAT-VVSAGLL 262
Query: 158 HDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHR---------RINVNQGT 208
HD +DD+ I FG VA LV GVS+LS++++L R + R++
Sbjct: 263 HDTIDDSFMDYDHIFRMFGAGVADLVEGVSKLSHLSKLARDNNTASRTVEADRLHTMFLA 322
Query: 209 LGHE-----ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLC 263
+ +LADRLHNM+TI ALP K + A+ET+ I+ LA+RLG+ + K +LE++C
Sbjct: 323 MADARAVLIKLADRLHNMKTIEALPFVKQQRFAKETMEIFVPLANRLGIASWKEQLENIC 382
Query: 264 FAVLQPQIFRKMRADL 279
F L P+ +++ + L
Sbjct: 383 FKHLNPEEHKELSSKL 398
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 82/134 (61%), Gaps = 9/134 (6%)
Query: 398 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 457
++S R KSLYSI+SKM +K++ + V+D LR+VV + CY LDIVH+
Sbjct: 427 SVSGRHKSLYSIYSKMIKKNLTMDDVHDIHGLRLVVETEKD---------CYRALDIVHK 477
Query: 458 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 517
LW + G F DYI++PK +GY+SLHT + EVQIRT++MH AE G AAHW YK
Sbjct: 478 LWPGVSGRFKDYILHPKVNGYRSLHTVILCEGVHPFEVQIRTKEMHLQAEFGFAAHWRYK 537
Query: 518 ETGNKLQSISSMDE 531
E G + + M E
Sbjct: 538 EGGCRHAFVLQMVE 551
>gi|359685240|ref|ZP_09255241.1| GTP pyrophosphokinase [Leptospira santarosai str. 2000030832]
Length = 674
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW PI G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPIPGRFKDYIATPKTNLYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 515 LYKE 518
+YKE
Sbjct: 346 MYKE 349
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 113/196 (57%), Gaps = 18/196 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E V KA ++RAH GQFR +G+PY+ H + G IL L +D + AG+LHD
Sbjct: 27 ESVLKAYNVSERAHQGQFRLSGEPYIVHPLQVGFILYEL-------GLDEKVICAGLLHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------QLLRRHRRINVNQGTLG 210
V++D S + +FG+++ LV GV+++S I + +R+ + +
Sbjct: 80 VIEDTQYSRDDMIRDFGEDITDLVEGVTKISKIKSQSKETEAAENIRKIIVATIKDIRVI 139
Query: 211 HEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
+LAD+ HNMRT+ P K R +AQETL ++ +A RLG++ +K+ELEDL F VL P+
Sbjct: 140 LIKLADKTHNMRTLSFQLPEKQRRIAQETLSLYAPIAGRLGIYKIKSELEDLAFQVLNPE 199
Query: 271 IFRKMRADLASMWSPR 286
+++++ ++ S S R
Sbjct: 200 EYQEVKKNINSKKSER 215
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 760 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|334136491|ref|ZP_08509954.1| GTP diphosphokinase [Paenibacillus sp. HGF7]
gi|333605960|gb|EGL17311.1| GTP diphosphokinase [Paenibacillus sp. HGF7]
Length = 728
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 90/153 (58%), Gaps = 9/153 (5%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+E +S R K +YSI KM ++ +++YD ALRV+V + I+ CY+ L
Sbjct: 227 GIEGDISGRPKHIYSIHKKMSSRNKQFNEIYDLMALRVIVDN---------IKDCYAALG 277
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
I+H LW P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 278 IIHTLWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPLEVQIRTWEMHKTAEYGIAAH 337
Query: 514 WLYKETGNKLQSISSMDESDIEASSSLSKDTDD 546
W YKE + S L K+TD+
Sbjct: 338 WAYKEGNGSPEGTFSDKMQWFREILELQKETDN 370
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 107/182 (58%), Gaps = 14/182 (7%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
++++A FA++AHHGQ RK+G+PY+ H + IL + + V +++A +LHDVV+
Sbjct: 21 RIKEAYEFAEQAHHGQVRKSGEPYILHPLAVADILVDM-----QMDVTSIIAALLHDVVE 75
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRRINVNQGT---LGHEE 213
D SL +++++FG A LV G+++L I Q +R++ V + +
Sbjct: 76 DTTVSLEAVQDKFGRTCAMLVDGLTKLERIKFKTKEEQQNENYRKMFVAMAQDIRVILIK 135
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LADRLHNMRT+ R +A ETL I+C +A RLG+ A+K E+ED+ L PQ +
Sbjct: 136 LADRLHNMRTLKYQSEESQRRIADETLEIFCPIAHRLGISAIKWEMEDIALRYLNPQQYY 195
Query: 274 KM 275
++
Sbjct: 196 RI 197
>gi|422005240|ref|ZP_16352435.1| GTP pyrophosphokinase [Leptospira santarosai serovar Shermani str.
LT 821]
gi|417256095|gb|EKT85535.1| GTP pyrophosphokinase [Leptospira santarosai serovar Shermani str.
LT 821]
Length = 674
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW PI G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPIPGRFKDYIATPKTNLYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 515 LYKE 518
+YKE
Sbjct: 346 MYKE 349
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 114/196 (58%), Gaps = 18/196 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E VQKA ++RAH GQFR +G+PY+ H + G IL L +D + AG+LHD
Sbjct: 27 ESVQKAYNVSERAHQGQFRLSGEPYIVHPLQVGFILYEL-------GLDEKVICAGLLHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------QLLRRHRRINVNQGTLG 210
V++D S + +FG+++ LV GV+++S I + +R+ + +
Sbjct: 80 VIEDTQYSRDDMIRDFGEDITDLVEGVTKISKIKSQSKETEAAENIRKIIVATIKDIRVI 139
Query: 211 HEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
+LAD+ HNMRT+ P K R +AQETL ++ +A RLG++ +K+ELEDL F VL P+
Sbjct: 140 LIKLADKTHNMRTLSFQLPEKQRRIAQETLSLYAPIAGRLGIYKIKSELEDLAFQVLNPE 199
Query: 271 IFRKMRADLASMWSPR 286
+++++ ++ S S R
Sbjct: 200 EYQEVKKNINSKKSER 215
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 760 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|82703620|ref|YP_413186.1| (p)ppGpp synthetase SpoT/RelA [Nitrosospira multiformis ATCC 25196]
gi|82411685|gb|ABB75794.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Nitrosospira multiformis ATCC 25196]
Length = 729
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 86/129 (66%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ ++ R K +YSI+ KM+RK V ++ D RA+R++V + ++ CY+ L
Sbjct: 246 GIKAQITGRPKHIYSIYRKMKRKGVDFKEIQDTRAVRILVDE---------VKDCYAALG 296
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW+PI EFDDYI PK + Y+SLHTAV GP+ +EVQIRT +MH ++E G+AAH
Sbjct: 297 LVHNLWMPIPKEFDDYIAKPKGNDYRSLHTAVIGPEDKVVEVQIRTHEMHRHSEMGVAAH 356
Query: 514 WLYKETGNK 522
W YKE +
Sbjct: 357 WRYKEGAKR 365
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 69/144 (47%), Gaps = 18/144 (12%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
DT+ AG+LH V + + FG VA LV GV R+ I L + N+ G+
Sbjct: 73 DTLAAGVLHAVPEYLEGYEEELATAFGPIVAHLVEGVRRVGRIQVLRSANSTDNIGNGSA 132
Query: 210 GHEEL------------------ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLG 251
E L ADRL MR + A A A+ TL I+ LA+RLG
Sbjct: 133 QIEALRKMLLAMAEDIRVVIIALADRLQTMRYVAARNVAGRWEAAEVTLNIFAPLANRLG 192
Query: 252 LWALKAELEDLCFAVLQPQIFRKM 275
LW +K ELEDL F + +P+ ++K+
Sbjct: 193 LWQVKWELEDLSFRITEPERYKKI 216
>gi|71728397|gb|EAO30564.1| RelA/SpoT protein [Xylella fastidiosa Ann-1]
Length = 718
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM++K + +VYD +A+RV+V D + CY+ L
Sbjct: 234 GVCAEVSGRPKHIYSIWRKMQKKRLHFEQVYDLQAVRVMVEDMDA---------CYAALG 284
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW P+ GEFDDYI PK + Y+SLHTAV GP+ +EVQIRT +MH +AE G+AAH
Sbjct: 285 VVHALWAPVPGEFDDYIARPKANDYRSLHTAVLGPEERTVEVQIRTHEMHAHAELGVAAH 344
Query: 514 WLYKETGN 521
W YKE G
Sbjct: 345 WKYKEDGK 352
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR L ++ RA+AQ T I LA+RLG+W LK ELEDL F L+ +I+R
Sbjct: 143 LARQLAKMRAAGVLLESQRRALAQLTRDIHAPLANRLGIWQLKWELEDLAFCYLESEIYR 202
Query: 274 KMRADLASMWSPRNRVGYSRRITTI 298
+ + L +RV R I+ I
Sbjct: 203 SIASALDE-----SRVARERYISVI 222
>gi|336400155|ref|ZP_08580943.1| hypothetical protein HMPREF0404_00234 [Fusobacterium sp. 21_1A]
gi|336163352|gb|EGN66284.1| hypothetical protein HMPREF0404_00234 [Fusobacterium sp. 21_1A]
Length = 574
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 109/183 (59%), Gaps = 14/183 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
++++ A+ FA+ +H GQ+RK+GD Y+ H + +IL + K DT+VAG+LHDVV
Sbjct: 21 DKIKLALGFAEESHQGQYRKSGDDYIVHPVEVAKILMDM-----KMDTDTIVAGLLHDVV 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE-------- 213
+D + I+ FGD VA LV GV++L + + N+ + L E
Sbjct: 76 EDTLIPIADIKYNFGDTVATLVDGVTKLKALPNGTKNQAE-NIRKMILAMAENIRVILIK 134
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LADRLHNMRT+ + P K +++++ETL I+ LA RLG+ +K+ELED+ F+ L F
Sbjct: 135 LADRLHNMRTLKFMKPEKQQSISKETLDIYAPLAHRLGMAKVKSELEDIAFSYLHHDEFL 194
Query: 274 KMR 276
+++
Sbjct: 195 EIK 197
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 73/126 (57%), Gaps = 9/126 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K YSI+ KM +K +YD +RV+V DK CY +L
Sbjct: 226 GIKAEVKGRFKHFYSIYRKMYQKGKEFDDIYDLMGVRVIVEDK---------ATCYHVLG 276
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH + P+ G F DYI PK + YQS+HT + GP G +E+QIRT+ M + AE G+AAH
Sbjct: 277 IVHSQYTPVPGRFKDYIAVPKSNNYQSIHTTIVGPLGKFIEIQIRTKDMDDIAEEGIAAH 336
Query: 514 WLYKET 519
W YKE
Sbjct: 337 WNYKEN 342
>gi|417989775|ref|ZP_12630276.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
A2-362]
gi|417993039|ref|ZP_12633390.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
CRF28]
gi|417996397|ref|ZP_12636677.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
M36]
gi|418015214|ref|ZP_12654791.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
Lpc-37]
gi|410532448|gb|EKQ07156.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
CRF28]
gi|410535519|gb|EKQ10140.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
M36]
gi|410537520|gb|EKQ12094.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
A2-362]
gi|410552038|gb|EKQ26077.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
Lpc-37]
Length = 742
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 109/192 (56%), Gaps = 14/192 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA H Q RK+G+PY+ H I ILA L K TV +G LHDVV+D
Sbjct: 28 VEKAYKFAAYVHKDQVRKSGEPYIIHPIQVAGILAEL-----KMDPATVASGYLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYI------NQLLRRHRRINVNQGT---LGHEEL 214
+LG IEE FG +VA +V GV++LS + ++L HR++ + + +L
Sbjct: 83 TNITLGDIEEVFGHDVAVIVDGVTKLSKVTYVAHKDELAENHRKMLLAMAKDLRVIMVKL 142
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHNMRT+ L P K R +A ETL I+ LA RLG+ +K ELEDL L PQ + +
Sbjct: 143 ADRLHNMRTLQHLRPDKQRRIANETLEIYAPLADRLGISTIKWELEDLSLRYLNPQQYYR 202
Query: 275 MRADLASMWSPR 286
+ + S + R
Sbjct: 203 IAHLMNSKRTER 214
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 83/151 (54%), Gaps = 19/151 (12%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+ R K +YSI+ KMR K ++YD A+RV+ I+ CY++L +H
Sbjct: 238 IYGRPKHIYSIYKKMRDKHKQFDELYDLLAIRVIT---------ETIKDCYAVLGAIHTK 288
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W P+ G F DYI PK + YQS+HT V GP G LEVQIRT++MH AE+G+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKANLYQSIHTTVIGPMGKPLEVQIRTEEMHHVAEYGVAAHWAYKE 348
Query: 519 ----------TGNKLQSISSMDESDIEASSS 539
TG KL + E E S +
Sbjct: 349 GQTSKVEYDKTGKKLDIFREILELQDETSDA 379
>gi|220907977|ref|YP_002483288.1| (p)ppGpp synthetase I SpoT/RelA [Cyanothece sp. PCC 7425]
gi|219864588|gb|ACL44927.1| (p)ppGpp synthetase I, SpoT/RelA [Cyanothece sp. PCC 7425]
Length = 748
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 104/183 (56%), Gaps = 13/183 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E V +A FA R H GQ R +G+PY+ H + +L L S+ V AG LHDV+
Sbjct: 38 ELVCRAFNFAYRLHQGQRRASGEPYIAHPVAVAGLLRDLGGSAA-----MVAAGFLHDVI 92
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYIN--------QLLRRHRRINVNQGTLGHEE 213
+D + +E EFG EV +LV GV++LS IN + RR + +
Sbjct: 93 EDTTVTPEQLEAEFGPEVRQLVEGVTKLSKINFSKTERQAESFRRMFLAMAQDIRVIFVK 152
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LADRLHNMRT+ LP K R +AQET ++ LA+RLG+W K ELEDL F L+P+ +R
Sbjct: 153 LADRLHNMRTLEYLPEEKRRRIAQETRDVFAPLANRLGIWRFKWELEDLSFKYLEPEAYR 212
Query: 274 KMR 276
+M+
Sbjct: 213 RMQ 215
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/134 (48%), Positives = 83/134 (61%), Gaps = 10/134 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
LS R K LYSI+ KM R+ H++YD A+RV+V K+ CY +L IVH
Sbjct: 250 LSGRPKHLYSIYQKMERQQKEFHEIYDIAAIRVIVETKDE---------CYRVLAIVHDC 300
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
+ P+ F DYI PKP+ YQSLHT V G LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 301 FKPVPNRFKDYIGLPKPNRYQSLHTVVIDQGGRPLEVQIRTMEMHRVAEYGIAAHWKYKE 360
Query: 519 TGNKL-QSISSMDE 531
G+ L Q +++ DE
Sbjct: 361 VGHSLGQHLTTADE 374
>gi|269836765|ref|YP_003318993.1| (p)ppGpp synthetase I SpoT/RelA [Sphaerobacter thermophilus DSM
20745]
gi|269786028|gb|ACZ38171.1| (p)ppGpp synthetase I, SpoT/RelA [Sphaerobacter thermophilus DSM
20745]
Length = 748
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S+R K + SI KM RK ++YD +RV+V +K CY L
Sbjct: 262 GIRAEISAREKHITSIARKMERKGRSFDEIYDVLGVRVIVDEKKD---------CYGALG 312
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
++H +W PI GEFDDYI PK S YQS+HTAV GPDG LE+QIRT +MH AE+G+AAH
Sbjct: 313 VIHTMWHPIPGEFDDYIATPKESMYQSIHTAVLGPDGHPLEIQIRTAEMHHVAEYGIAAH 372
Query: 514 WLYKE 518
W YKE
Sbjct: 373 WRYKE 377
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 116/208 (55%), Gaps = 23/208 (11%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA +AH G+ R++GDPY++H + ILA + + +T+ A +LHDV++D
Sbjct: 50 VRKAYEFADQAHAGKLRRSGDPYISHPLAVAIILAEM-----QLDQETLCAALLHDVIED 104
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYIN----------------QLLRRHRRINVNQG 207
S+ + FG+ +A+LV GV++L I + LR+ V+
Sbjct: 105 TDTSVEELTTIFGERIARLVDGVTKLGRIRWATEEDSVTREKERQAESLRKMFLAMVDDV 164
Query: 208 TLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL 267
+ +LADRLHNMRT+ +P AK AQET+ I+ LA+RLG+W LK+ELEDL L
Sbjct: 165 RVVLIKLADRLHNMRTLEHMPRAKQLRSAQETMEIYAPLANRLGIWQLKSELEDLALRYL 224
Query: 268 QPQIFRKMRADLASMWSPRNRVGYSRRI 295
PQ + ++ L + R R Y +R+
Sbjct: 225 DPQTYFSIKRALDRRGTDRER--YLQRV 250
>gi|119944303|ref|YP_941983.1| (p)ppGpp synthetase I and guanosine-3',5'-bis pyrophosphate
3'-pyrophosphohydrolase [Psychromonas ingrahamii 37]
gi|119862907|gb|ABM02384.1| (p)ppGpp synthetase I and guanosine-3',5'-bis pyrophosphate
3'-pyrophosphohydrolase [Psychromonas ingrahamii 37]
Length = 737
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/121 (52%), Positives = 81/121 (66%), Gaps = 9/121 (7%)
Query: 398 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 457
T R K +YSI+ KM++K++ +YD RA+RVVV +Q CY+ L +H
Sbjct: 246 TAYGRPKHIYSIYRKMQKKNLQFEDLYDVRAVRVVV---------EKLQDCYAALGAIHT 296
Query: 458 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 517
W I EFDDYI NPK +GYQS+HT V GP+G A+EVQIRT+KMHE +E G+AAHW YK
Sbjct: 297 QWRHIPSEFDDYIANPKANGYQSIHTVVLGPEGKAVEVQIRTRKMHEDSELGVAAHWKYK 356
Query: 518 E 518
E
Sbjct: 357 E 357
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 17/147 (11%)
Query: 149 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 208
+DT+ A ++ ++D S + E + VAKLV G + + I + L+ N N
Sbjct: 71 MDTLNAALIFPLLDHQIISQEQVNEWWSKRVAKLVKGATDMEGI-RALQNQGGSNNNAAQ 129
Query: 209 LGHE----------------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
+ + +LA+R+ +R I K VA E I+ LA+RLG+
Sbjct: 130 VDNLRNMLLAMVDDVRAVVIKLAERICYLRQIKGADKDKRLLVASEISSIYAPLANRLGI 189
Query: 253 WALKAELEDLCFAVLQPQIFRKMRADL 279
LK ELEDL F L+P+I++K+ L
Sbjct: 190 GQLKWELEDLSFRYLEPEIYKKIAKQL 216
>gi|302339536|ref|YP_003804742.1| (p)ppGpp synthetase I SpoT/RelA [Spirochaeta smaragdinae DSM 11293]
gi|301636721|gb|ADK82148.1| (p)ppGpp synthetase I, SpoT/RelA [Spirochaeta smaragdinae DSM
11293]
Length = 668
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 89/137 (64%), Gaps = 9/137 (6%)
Query: 386 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 445
L+ + +++ + +R K LYSI+ KM+R+ I ++YD +R++ +
Sbjct: 220 LLKAAAAEKIDIEVMARAKHLYSIYLKMKRRKKDISEIYDLLGIRIICSTTSE------- 272
Query: 446 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 505
CY+LL +VH+LW PI+G F DYI PK + YQSLHT V G DG +E+QIRT++MH
Sbjct: 273 --CYTLLGVVHKLWPPIEGRFKDYIAMPKANNYQSLHTTVMGFDGQLIEIQIRTREMHNL 330
Query: 506 AEHGLAAHWLYKETGNK 522
AE+G+AAHW+YK+ G++
Sbjct: 331 AEYGIAAHWVYKQDGSR 347
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 107/215 (49%), Gaps = 16/215 (7%)
Query: 90 GVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAV 149
+ ++ +P +++ +A A+AK H Q R +G+PY H +H L L
Sbjct: 9 NIKLSRFPEKERQKILEAAAWAKALHKNQKRASGEPYFIHPLHVAEFLIDLGLDQ----- 63
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------QLLRRHR 200
+ ++A +LHDV++D L + + FG ++ LV GV+++S + + +R+
Sbjct: 64 EAIIAALLHDVLEDTDIELPELRKRFGKQIGALVDGVTKISIVKAKSKSVQEAETIRKML 123
Query: 201 RINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 260
+ +LAD+ HNM T+ L P K +A+A E L I+ LA RLG+ LKAELE
Sbjct: 124 FAMTRDIRVIIIKLADKYHNMSTLEYLSPEKRKAIATECLDIYAPLADRLGISWLKAELE 183
Query: 261 DLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRI 295
DL L P + + +AS R Y ++I
Sbjct: 184 DLALKHLNPSAWEYINQFVAS--KKTERANYLKKI 216
>gi|206901091|ref|YP_002250691.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase) [Dictyoglomus
thermophilum H-6-12]
gi|206740194|gb|ACI19252.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase) [Dictyoglomus
thermophilum H-6-12]
Length = 727
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 95/167 (56%), Gaps = 12/167 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ ++ R K LYSI+ KM R+ + I ++YD +RV+V + + CY +L
Sbjct: 229 GINAEVTGRAKHLYSIYQKMLRRGIEIEEMYDLLGVRVIVNSE---------KECYEVLG 279
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
I+H LW P+ G F DYI N K + YQSLHT V DG LEVQIRT +MH AE+G+AAH
Sbjct: 280 IIHNLWKPVPGRFKDYIANKKSNNYQSLHTTVIAMDGKPLEVQIRTWEMHRVAEYGIAAH 339
Query: 514 WLYKETGNK---LQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQK 557
WLYKE K + S +E L+ D + + +DLF++
Sbjct: 340 WLYKEEIKKPDYFEEKLSWLRQLLEWQKELADDQEFLESIKSDLFER 386
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 109/203 (53%), Gaps = 14/203 (6%)
Query: 95 GYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVA 154
G ++ E ++KA FA+ AH GQ RK+G+PY+TH + +IL L ++A
Sbjct: 15 GKEKYSSENLKKAFIFAENAHKGQMRKSGEPYITHPVEVAKILMDLGMEET-----VIIA 69
Query: 155 GILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRL---------SYINQLLRRHRRINVN 205
G+LHDV++D IE+EFG +V LV +++L +Y Q LR+
Sbjct: 70 GLLHDVLEDTKVPKEEIEKEFGKDVLSLVEAITKLEKLSFYPTEAYRAQNLRKMFIAMAK 129
Query: 206 QGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFA 265
+ +LADRLHNM+T+ K + +A+ETL I+ LA RLG+W +K LEDL F
Sbjct: 130 DIRVIIIKLADRLHNMQTLQYHDEEKQKRIAKETLEIYAPLAHRLGVWDIKWRLEDLAFR 189
Query: 266 VLQPQIFRKMRADLASMWSPRNR 288
L+P+ + + +A R +
Sbjct: 190 YLEPEKYHYVAKKVAETRKEREK 212
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 13/100 (13%)
Query: 718 KVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGST 777
K+ LR +L W+++L + +S S + + V P G+I+ L GST
Sbjct: 355 KLSWLRQLLEWQKELADDQEFLES---------IKSDLFEREIYVFTPKGDIIALPQGST 405
Query: 778 AADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
D A +VG + VNG++V N LK+GDIVE+
Sbjct: 406 PIDFAYAIHTEVGHRCRGAKVNGKIVPLNYVLKNGDIVEI 445
>gi|404328487|ref|ZP_10968935.1| (p)ppGpp synthetase I SpoT/RelA [Sporolactobacillus vineae DSM
21990 = SL153]
Length = 724
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 108/186 (58%), Gaps = 20/186 (10%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++KA +AK+AH GQ RK+G+PY+TH + IL L K V T+++G LHDVV
Sbjct: 20 ELIKKAYEYAKKAHAGQLRKSGEPYITHPVEVAGILVNL-----KMDVTTIMSGFLHDVV 74
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYI------NQLLRRHRRINVNQGTLGHE--- 212
+D +L + EFGD VA LV GV++L + +Q HR++ V + +
Sbjct: 75 EDTPVTLDDVRNEFGDNVAMLVDGVTKLRHFEYSSKEDQQAENHRKMFV---AMARDLRC 131
Query: 213 ---ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 269
+LADRLHNMRT+ + K A ET+ I+ LA+RLG+ A+K ELED+ L P
Sbjct: 132 VIVKLADRLHNMRTLKYMTKEKQIQKANETMEIFAPLANRLGISAIKWELEDISLRYLNP 191
Query: 270 QIFRKM 275
Q + K+
Sbjct: 192 QQYYKI 197
Score = 122 bits (306), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 99/168 (58%), Gaps = 18/168 (10%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
++ +S R K +YSI+ KM + +++YD A+R++V +I+ CY++L I
Sbjct: 228 IKAEISGRPKHIYSIYRKMVNQHKQFNEIYDLFAVRIIV---------ESIKDCYAILGI 278
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
+H W P+ G F DYI PK + YQSLHT V GP G LEVQ+RT++MH+ AE+G+AAHW
Sbjct: 279 IHTHWKPMPGRFKDYIAMPKANMYQSLHTTVIGPKGDPLEVQVRTEEMHDVAEYGIAAHW 338
Query: 515 LYKETGNKLQSISSMDESDIEASSSL---SKDTDD----HNPLDTDLF 555
YKE K ++I++ E + + K+TDD L DLF
Sbjct: 339 AYKE--GKTKNINNKFEDKLTWFREILEYQKETDDAREFMESLKMDLF 384
>gi|422933491|ref|ZP_16966411.1| GTP diphosphokinase [Fusobacterium nucleatum subsp. animalis ATCC
51191]
gi|339891612|gb|EGQ80570.1| GTP diphosphokinase [Fusobacterium nucleatum subsp. animalis ATCC
51191]
Length = 552
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 109/183 (59%), Gaps = 14/183 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
++++ A+ FA+ +H GQ+RK+GD Y+ H + +IL + K DT+VAG+LHDVV
Sbjct: 21 DKIKLALGFAEESHQGQYRKSGDDYIVHPVEVAKILMDM-----KMDTDTIVAGLLHDVV 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE-------- 213
+D + I+ FGD VA LV GV++L + + N+ + L E
Sbjct: 76 EDTLIPIADIKYNFGDTVATLVDGVTKLKALPNGTKNQAE-NIRKMILAMAENIRVILIK 134
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LADRLHNMRT+ + P K +++++ETL I+ LA RLG+ +K+ELED+ F+ L F
Sbjct: 135 LADRLHNMRTLKFMKPEKQQSISKETLDIYAPLAHRLGMAKVKSELEDIAFSYLHHDEFL 194
Query: 274 KMR 276
+++
Sbjct: 195 EIK 197
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 73/126 (57%), Gaps = 9/126 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K YSI+ KM +K +YD +RV+V DK CY +L
Sbjct: 226 GIKAEVKGRFKHFYSIYRKMYQKGKDFDDIYDLMGVRVIVEDK---------ATCYHVLG 276
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH + P+ G F DYI PK + YQS+HT + GP G +E+QIRT+ M + AE G+AAH
Sbjct: 277 IVHSQYTPVPGRFKDYIAVPKSNNYQSIHTTIVGPLGKFIEIQIRTKDMDDIAEEGIAAH 336
Query: 514 WLYKET 519
W YKE
Sbjct: 337 WNYKEN 342
>gi|227534968|ref|ZP_03965017.1| GTP pyrophosphokinase [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|239631387|ref|ZP_04674418.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Lactobacillus paracasei subsp. paracasei 8700:2]
gi|301066581|ref|YP_003788604.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Lactobacillus casei str. Zhang]
gi|417980818|ref|ZP_12621497.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
12A]
gi|417986894|ref|ZP_12627458.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
32G]
gi|417999269|ref|ZP_12639480.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
T71499]
gi|418002217|ref|ZP_12642339.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
UCD174]
gi|418008131|ref|ZP_12648000.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
UW4]
gi|418010975|ref|ZP_12650746.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
Lc-10]
gi|227187425|gb|EEI67492.1| GTP pyrophosphokinase [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|239525852|gb|EEQ64853.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Lactobacillus paracasei subsp. paracasei 8700:2]
gi|300438988|gb|ADK18754.1| Guanosine polyphosphate pyrophosphohydrolase/synthetase
[Lactobacillus casei str. Zhang]
gi|410524265|gb|EKP99178.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
32G]
gi|410524329|gb|EKP99241.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
12A]
gi|410539545|gb|EKQ14073.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
T71499]
gi|410544645|gb|EKQ18966.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
UCD174]
gi|410547359|gb|EKQ21594.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
UW4]
gi|410553554|gb|EKQ27557.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
Lc-10]
Length = 742
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 109/192 (56%), Gaps = 14/192 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA H Q RK+G+PY+ H I ILA L K TV +G LHDVV+D
Sbjct: 28 VEKAYKFAAYVHKDQVRKSGEPYIIHPIQVAGILAEL-----KMDPATVASGYLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYI------NQLLRRHRRINVNQGT---LGHEEL 214
+LG IEE FG +VA +V GV++LS + ++L HR++ + + +L
Sbjct: 83 TNITLGDIEEVFGHDVAVIVDGVTKLSKVTYVAHKDELAENHRKMLLAMAKDLRVIMVKL 142
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHNMRT+ L P K R +A ETL I+ LA RLG+ +K ELEDL L PQ + +
Sbjct: 143 ADRLHNMRTLQHLRPDKQRRIANETLEIYAPLADRLGISTIKWELEDLSLRYLNPQQYYR 202
Query: 275 MRADLASMWSPR 286
+ + S + R
Sbjct: 203 IAHLMNSKRTER 214
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 83/151 (54%), Gaps = 19/151 (12%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+ R K +YSI+ KMR K ++YD A+RV+ I+ CY++L +H
Sbjct: 238 IYGRPKHIYSIYKKMRDKHKQFDELYDLLAIRVIT---------ETIKDCYAVLGAIHTK 288
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W P+ G F DYI PK + YQS+HT V GP G LEVQIRT++MH AE+G+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKANLYQSIHTTVIGPMGKPLEVQIRTEEMHHVAEYGVAAHWAYKE 348
Query: 519 ----------TGNKLQSISSMDESDIEASSS 539
TG KL + E E S +
Sbjct: 349 GQTSKVEYDKTGKKLDIFREILELQDETSDA 379
>gi|71731045|gb|EAO33113.1| RelA/SpoT protein [Xylella fastidiosa Ann-1]
Length = 718
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM++K + +VYD +A+RV+V D + CY+ L
Sbjct: 234 GVCAEVSGRPKHIYSIWRKMQKKRLHFEQVYDLQAVRVMVED---------MAACYAALG 284
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW P+ GEFDDYI PK + Y+SLHTAV GP+ +EVQIRT +MH +AE G+AAH
Sbjct: 285 VVHALWAPVPGEFDDYIARPKANDYRSLHTAVLGPEERTVEVQIRTHEMHAHAELGVAAH 344
Query: 514 WLYKETGN 521
W YKE G
Sbjct: 345 WKYKEDGK 352
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR L ++ RA+AQ T I LA+RLG+W LK ELEDL F L+ +I+R
Sbjct: 143 LARQLAKMRAAGVLLESQRRALAQLTRDIHAPLANRLGIWQLKWELEDLAFCYLESEIYR 202
Query: 274 KMRADLASMWSPRNRVGYSRRITTI 298
+ + L +RV R I+ I
Sbjct: 203 SIASALDE-----SRVARERYISVI 222
>gi|456865837|gb|EMF84149.1| putative GTP diphosphokinase [Leptospira weilii serovar Topaz str.
LT2116]
Length = 674
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 515 LYKE 518
+YKE
Sbjct: 346 MYKE 349
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 114/196 (58%), Gaps = 18/196 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E VQKA ++RAH GQFR +G+PY+ H + G IL L +D + AG+LHD
Sbjct: 27 ESVQKAYDVSERAHQGQFRLSGEPYIVHPLQVGFILYEL-------GLDEKVICAGLLHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------QLLRRHRRINVNQGTLG 210
V++D S + +FG+++ LV GV+++S I + +R+ + +
Sbjct: 80 VIEDTQYSRDDMIRDFGEDITDLVEGVTKISKIKSQSKETEAAENIRKIIVATIKDIRVI 139
Query: 211 HEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
+LAD+ HNMRT+ P K R +AQETL ++ +A RLG++ +K+ELEDL F VL P+
Sbjct: 140 LIKLADKTHNMRTLSFQLPEKQRRIAQETLSLYAPIAGRLGIYKIKSELEDLAFQVLNPE 199
Query: 271 IFRKMRADLASMWSPR 286
+++++ ++ S S R
Sbjct: 200 EYQEVKKNINSKKSER 215
Score = 41.2 bits (95), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 760 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
V V P GEI++L G+T D A + VGL+ K +NG+++ TE++ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTEIRSGDQIEI 450
>gi|191638527|ref|YP_001987693.1| GTP pyrophosphokinase [Lactobacillus casei BL23]
gi|385820236|ref|YP_005856623.1| GTP pyrophosphokinase [Lactobacillus casei LC2W]
gi|385823433|ref|YP_005859775.1| GTP pyrophosphokinase [Lactobacillus casei BD-II]
gi|418005247|ref|ZP_12645243.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
UW1]
gi|190712829|emb|CAQ66835.1| GTP pyrophosphokinase [Lactobacillus casei BL23]
gi|327382563|gb|AEA54039.1| GTP pyrophosphokinase [Lactobacillus casei LC2W]
gi|327385760|gb|AEA57234.1| GTP pyrophosphokinase [Lactobacillus casei BD-II]
gi|410547500|gb|EKQ21733.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
UW1]
Length = 742
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 109/192 (56%), Gaps = 14/192 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA H Q RK+G+PY+ H I ILA L K TV +G LHDVV+D
Sbjct: 28 VEKAYKFAAYVHKDQVRKSGEPYIIHPIQVAGILAEL-----KMDPATVASGYLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYI------NQLLRRHRRINVNQGT---LGHEEL 214
+LG IEE FG +VA +V GV++LS + ++L HR++ + + +L
Sbjct: 83 TNITLGDIEEVFGHDVAVIVDGVTKLSKVTYVAHKDELAENHRKMLLAMAKDLRVIMVKL 142
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHNMRT+ L P K R +A ETL I+ LA RLG+ +K ELEDL L PQ + +
Sbjct: 143 ADRLHNMRTLQHLRPDKQRRIANETLEIYAPLADRLGISTIKWELEDLSLRYLNPQQYYR 202
Query: 275 MRADLASMWSPR 286
+ + S + R
Sbjct: 203 IAHLMNSKRTER 214
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 83/151 (54%), Gaps = 19/151 (12%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+ R K +YSI+ KMR K ++YD A+RV+ I+ CY++L +H
Sbjct: 238 IYGRPKHIYSIYKKMRDKHKQFDELYDLLAIRVIT---------ETIKDCYAVLGAIHTK 288
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W P+ G F DYI PK + YQS+HT V GP G LEVQIRT++MH AE+G+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKANLYQSIHTTVIGPMGKPLEVQIRTEEMHHVAEYGVAAHWAYKE 348
Query: 519 ----------TGNKLQSISSMDESDIEASSS 539
TG KL + E E S +
Sbjct: 349 GQTSKVEYDKTGKKLDIFREILELQDETSDA 379
>gi|418735206|ref|ZP_13291618.1| putative GTP diphosphokinase [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|410749462|gb|EKR02354.1| putative GTP diphosphokinase [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
Length = 674
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 515 LYKE 518
+YKE
Sbjct: 346 MYKE 349
Score = 126 bits (316), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 114/196 (58%), Gaps = 18/196 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E VQKA ++RAH GQFR +G+PY+ H + G IL L +D + AG+LHD
Sbjct: 27 ESVQKAYDVSERAHQGQFRLSGEPYIVHPLQVGFILYEL-------GLDEKVICAGLLHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------QLLRRHRRINVNQGTLG 210
V++D S + +FG+++ LV GV+++S I + +R+ + +
Sbjct: 80 VIEDTQYSRDDMIRDFGEDITDLVEGVTKISKIKSQSKETEAAENIRKIIVATIKDIRVI 139
Query: 211 HEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
+LAD+ HNMRT+ P K + +AQETL ++ +A RLG++ +K+ELEDL F VL P+
Sbjct: 140 LIKLADKTHNMRTLSFQLPEKQKRIAQETLSLYAPIAGRLGIYKIKSELEDLAFQVLNPE 199
Query: 271 IFRKMRADLASMWSPR 286
+++++ ++ S S R
Sbjct: 200 EYQEVKKNINSKKSER 215
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 760 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|407791016|ref|ZP_11138105.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Gallaecimonas
xiamenensis 3-C-1]
gi|407201659|gb|EKE71656.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Gallaecimonas
xiamenensis 3-C-1]
Length = 725
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 84/127 (66%), Gaps = 9/127 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K +YSI+ KM RK + +++D RA+R++V P +Q CY+ L
Sbjct: 230 GVDAQVYGRPKHIYSIWKKMSRKHLAFDELFDVRAVRIIV---------PRLQDCYAALG 280
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH + I EFDDY+ NPKP+GY+S+HT V GP G +E+QIRTQ MH+ AE G+AAH
Sbjct: 281 VVHTQFHHIPKEFDDYVANPKPNGYRSIHTVVVGPKGKTVEIQIRTQAMHDEAELGVAAH 340
Query: 514 WLYKETG 520
W YKE G
Sbjct: 341 WAYKEGG 347
>gi|406898727|gb|EKD42212.1| hypothetical protein ACD_73C00262G0001, partial [uncultured
bacterium]
Length = 322
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 115/206 (55%), Gaps = 16/206 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ KA F +AH GQ RK+GDPYL H + ILA + K V ++ AG+LHD ++D
Sbjct: 23 INKAYVFTAKAHAGQMRKSGDPYLIHPLEVAHILADM-----KLDVSSIAAGMLHDTLED 77
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYIN-QLLRRHRRINVNQGTLGHE--------EL 214
+ I++ FG ++A+LV GV+++S H+ N + + +L
Sbjct: 78 TQTTKKDIQDLFGADIAELVDGVTKISKFKFNTQEEHQAENFRKMIMAMSRDIRVILIKL 137
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADR HN+ T+ +P K ++AQETL I+ LASRLG+ LK +LEDL F L+P ++R+
Sbjct: 138 ADRFHNLSTLQFMPEEKQMSIAQETLDIYSPLASRLGIDWLKLQLEDLSFRFLKPDVYRQ 197
Query: 275 MRADLASMWSPRNRVGYSRRITTIVS 300
++ + + +NR Y R+ VS
Sbjct: 198 IQKQMVRL--KKNREEYMARVEKAVS 221
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 60/109 (55%), Gaps = 11/109 (10%)
Query: 389 TSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCC 448
TS IP ++ RLK Y I+ KM+R ++ +V+D A R++ + I+ C
Sbjct: 225 TSSIP--HFVIAGRLKHAYGIYRKMQRLNISFEQVHDLLAFRIITNN---------IEEC 273
Query: 449 YSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQI 497
Y L ++H +W P+ G F DY+ PK + YQSLHT V DG +E QI
Sbjct: 274 YEALGLLHSMWKPVPGRFKDYVAMPKANNYQSLHTTVICLDGERVEFQI 322
>gi|217972410|ref|YP_002357161.1| (p)ppGpp synthetase I SpoT/RelA [Shewanella baltica OS223]
gi|217497545|gb|ACK45738.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella baltica OS223]
Length = 736
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/130 (48%), Positives = 83/130 (63%), Gaps = 9/130 (6%)
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI+ KM+ K + +++D RA+R+V +Q CY L +VH LW
Sbjct: 251 RPKHIYSIWRKMKGKHLKFDELFDVRAVRIVTD---------RLQDCYGALGVVHTLWHH 301
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRTQ MHE AE G+AAHW YKE N
Sbjct: 302 IPREFDDYVANPKPNGYQSIHTVVVGPEGKTVEIQIRTQDMHEDAELGVAAHWKYKEGNN 361
Query: 522 KLQSISSMDE 531
+ S +E
Sbjct: 362 QSGKQSGYEE 371
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 25/151 (16%)
Query: 149 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 208
++T+ A IL V D + +I+E+FG+ +A+LVA V ++ I L +IN N +
Sbjct: 72 IETLQAAILFVVFDAGLLTEDAIKEKFGEPLARLVASVVTMNAIGAL-----KINPNSRS 126
Query: 209 LGHE--------------------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 248
+ +LA+R+ +R + +A+E I+ LA+
Sbjct: 127 TEPQIDNIRRMLLAMVEDVRAVVIKLAERVCLLRAVKNADEETRVLLAREIADIYAPLAN 186
Query: 249 RLGLWALKAELEDLCFAVLQPQIFRKMRADL 279
RLG+ LK ELED+ F L P ++ + L
Sbjct: 187 RLGIGQLKWELEDISFRYLHPDTYKDIAKQL 217
>gi|170729869|ref|YP_001775302.1| GTP diphosphokinase [Xylella fastidiosa M12]
gi|167964662|gb|ACA11672.1| GTP diphosphokinase [Xylella fastidiosa M12]
Length = 718
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM++K + +VYD +A+RV+V D + CY+ L
Sbjct: 234 GVCAEVSGRPKHIYSIWRKMQKKRLHFEQVYDLQAVRVMVED---------MAACYAALG 284
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW P+ GEFDDYI PK + Y+SLHTAV GP+ +EVQIRT +MH +AE G+AAH
Sbjct: 285 VVHALWAPVPGEFDDYIARPKANDYRSLHTAVLGPEERTVEVQIRTHEMHAHAELGVAAH 344
Query: 514 WLYKETGN 521
W YKE G
Sbjct: 345 WKYKEDGK 352
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR L ++ RA+AQ T I LA+RLG+W LK ELEDL F L+ +I+R
Sbjct: 143 LARQLAKMRAAGVLLESQRRALAQLTRDIHAPLANRLGIWQLKWELEDLAFCYLESEIYR 202
Query: 274 KMRADLASMWSPRNRVGYSRRITTI 298
+ + L +RV R I+ I
Sbjct: 203 SIASALDE-----SRVARERYISVI 222
>gi|28198473|ref|NP_778787.1| ATP:GTP 3'-pyrophosphotransferase [Xylella fastidiosa Temecula1]
gi|182681151|ref|YP_001829311.1| RelA/SpoT family protein [Xylella fastidiosa M23]
gi|386084649|ref|YP_006000931.1| RelA/SpoT family protein [Xylella fastidiosa subsp. fastidiosa
GB514]
gi|417559170|ref|ZP_12210123.1| Guanosine polyphosphate pyrophosphohydrolase/synthetase [Xylella
fastidiosa EB92.1]
gi|28056557|gb|AAO28436.1| ATP:GTP 3'-pyrophosphotranferase [Xylella fastidiosa Temecula1]
gi|182631261|gb|ACB92037.1| RelA/SpoT family protein [Xylella fastidiosa M23]
gi|307579596|gb|ADN63565.1| RelA/SpoT family protein [Xylella fastidiosa subsp. fastidiosa
GB514]
gi|338178254|gb|EGO81246.1| Guanosine polyphosphate pyrophosphohydrolase/synthetase [Xylella
fastidiosa EB92.1]
Length = 718
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM++K + +VYD +A+RV+V D + CY+ L
Sbjct: 234 GVCAEVSGRPKHIYSIWRKMQKKRLHFEQVYDLQAVRVMVED---------MAACYAALG 284
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW P+ GEFDDYI PK + Y+SLHTAV GP+ +EVQIRT +MH +AE G+AAH
Sbjct: 285 VVHALWAPVPGEFDDYIARPKANDYRSLHTAVLGPEERTVEVQIRTHEMHAHAELGVAAH 344
Query: 514 WLYKETGN 521
W YKE G
Sbjct: 345 WKYKEDGK 352
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR L ++ RA+AQ T I LA+RLG+W LK ELEDL F L+ +I+R
Sbjct: 143 LARQLAKMRAAGVLLESQRRALAQLTRDIHAPLANRLGIWQLKWELEDLAFCYLESEIYR 202
Query: 274 KMRADLASMWSPRNRVGYSRRITTI 298
+ + L +RV R I+ I
Sbjct: 203 SIASALDE-----SRVARERYISVI 222
>gi|421100332|ref|ZP_15560964.1| putative GTP diphosphokinase [Leptospira borgpetersenii str.
200901122]
gi|410796642|gb|EKR98769.1| putative GTP diphosphokinase [Leptospira borgpetersenii str.
200901122]
Length = 674
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 515 LYKE 518
+YKE
Sbjct: 346 MYKE 349
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 114/196 (58%), Gaps = 18/196 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E VQKA ++RAH GQFR +G+PY+ H + G IL L +D + AG+LHD
Sbjct: 27 ESVQKAYDVSERAHQGQFRLSGEPYIIHPLQVGFILYEL-------GLDEKVICAGLLHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------QLLRRHRRINVNQGTLG 210
V++D S + +FG+++ LV GV+++S I + +R+ + +
Sbjct: 80 VIEDTQYSRDDMIRDFGEDITDLVEGVTKISKIKSQSKETEAAENIRKIIVATIKDIRVI 139
Query: 211 HEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
+LAD+ HNMRT+ P K R +AQETL ++ +A RLG++ +K+ELEDL F VL P+
Sbjct: 140 LIKLADKTHNMRTLSFQLPEKQRRIAQETLSLYAPIAGRLGIYKIKSELEDLAFQVLNPE 199
Query: 271 IFRKMRADLASMWSPR 286
+++++ ++ S S R
Sbjct: 200 EYQEVKKNINSKKSER 215
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 760 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|418721778|ref|ZP_13280952.1| putative GTP diphosphokinase [Leptospira borgpetersenii str. UI
09149]
gi|421095922|ref|ZP_15556630.1| putative GTP diphosphokinase [Leptospira borgpetersenii str.
200801926]
gi|410361337|gb|EKP12382.1| putative GTP diphosphokinase [Leptospira borgpetersenii str.
200801926]
gi|410741822|gb|EKQ90575.1| putative GTP diphosphokinase [Leptospira borgpetersenii str. UI
09149]
gi|456889585|gb|EMG00473.1| putative GTP diphosphokinase [Leptospira borgpetersenii str.
200701203]
Length = 674
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 515 LYKE 518
+YKE
Sbjct: 346 MYKE 349
Score = 125 bits (315), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 114/196 (58%), Gaps = 18/196 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E VQKA ++RAH GQFR +G+PY+ H + G IL L +D + AG+LHD
Sbjct: 27 ESVQKAYDVSERAHQGQFRLSGEPYIVHPLQVGFILYEL-------GLDEKVICAGLLHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------QLLRRHRRINVNQGTLG 210
V++D S + +FG+++ LV GV+++S I + +R+ + +
Sbjct: 80 VIEDTQYSRDDMIRDFGEDITDLVEGVTKISKIKSQSKETEAAENIRKIIVATIKDIRVI 139
Query: 211 HEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
+LAD+ HNMRT+ P K + +AQETL ++ +A RLG++ +K+ELEDL F VL P+
Sbjct: 140 LIKLADKTHNMRTLSFQLPEKQKRIAQETLSLYAPIAGRLGIYKIKSELEDLAFQVLNPE 199
Query: 271 IFRKMRADLASMWSPR 286
+++++ ++ S S R
Sbjct: 200 EYQEVKKNINSKKSER 215
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 760 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|398333292|ref|ZP_10517997.1| GTP pyrophosphokinase [Leptospira alexanderi serovar Manhao 3 str.
L 60]
Length = 674
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 515 LYKE 518
+YKE
Sbjct: 346 MYKE 349
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 114/196 (58%), Gaps = 18/196 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E VQKA ++RAH GQFR +G+PY+ H + G IL L +D + AG+LHD
Sbjct: 27 ESVQKAYDVSERAHQGQFRLSGEPYIVHPLQVGFILYEL-------GLDEKVICAGLLHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------QLLRRHRRINVNQGTLG 210
V++D S + +FG+++ LV GV+++S I + +R+ + +
Sbjct: 80 VIEDTQYSRDDMIRDFGEDITDLVEGVTKISKIKSQSKETEAAENIRKIIVATIKDIRVI 139
Query: 211 HEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
+LAD+ HNMRT+ P K R +AQETL ++ +A RLG++ +K+ELEDL F VL P+
Sbjct: 140 LIKLADKTHNMRTLSFQLPEKQRRIAQETLSLYAPIAGRLGIYKIKSELEDLAFQVLNPE 199
Query: 271 IFRKMRADLASMWSPR 286
+++++ ++ S S R
Sbjct: 200 EYQEVKKNINSKKSER 215
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 760 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|116328856|ref|YP_798576.1| GTP pyrophosphokinase [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116330538|ref|YP_800256.1| GTP pyrophosphokinase [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
gi|116121600|gb|ABJ79643.1| GTP pyrophosphokinase [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116124227|gb|ABJ75498.1| GTP pyrophosphokinase [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
Length = 674
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 515 LYKE 518
+YKE
Sbjct: 346 MYKE 349
Score = 125 bits (315), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 114/196 (58%), Gaps = 18/196 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E VQKA ++RAH GQFR +G+PY+ H + G IL L +D + AG+LHD
Sbjct: 27 ESVQKAYDVSERAHQGQFRLSGEPYIVHPLQVGFILYEL-------GLDEKVICAGLLHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------QLLRRHRRINVNQGTLG 210
V++D S + +FG+++ LV GV+++S I + +R+ + +
Sbjct: 80 VIEDTQYSRDDMIRDFGEDITDLVEGVTKISKIKSQSKETEAAENIRKIIVATIKDIRVI 139
Query: 211 HEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
+LAD+ HNMRT+ P K + +AQETL ++ +A RLG++ +K+ELEDL F VL P+
Sbjct: 140 LIKLADKTHNMRTLSFQLPEKQKRIAQETLSLYAPIAGRLGIYKIKSELEDLAFQVLNPE 199
Query: 271 IFRKMRADLASMWSPR 286
+++++ ++ S S R
Sbjct: 200 EYQEVKKNINSKKSER 215
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 760 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|160876395|ref|YP_001555711.1| (p)ppGpp synthetase I SpoT/RelA [Shewanella baltica OS195]
gi|378709596|ref|YP_005274490.1| (p)ppGpp synthetase I SpoT/RelA [Shewanella baltica OS678]
gi|160861917|gb|ABX50451.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella baltica OS195]
gi|315268585|gb|ADT95438.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella baltica OS678]
Length = 736
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/130 (48%), Positives = 83/130 (63%), Gaps = 9/130 (6%)
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI+ KM+ K + +++D RA+R+V +Q CY L +VH LW
Sbjct: 251 RPKHIYSIWRKMKGKHLKFDELFDVRAVRIVTD---------RLQDCYGALGVVHTLWHH 301
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRTQ MHE AE G+AAHW YKE N
Sbjct: 302 IPREFDDYVANPKPNGYQSIHTVVVGPEGKTVEIQIRTQDMHEDAELGVAAHWKYKEGNN 361
Query: 522 KLQSISSMDE 531
+ S +E
Sbjct: 362 QSGKQSGYEE 371
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 25/151 (16%)
Query: 149 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 208
++T+ A IL V D + +I+E+FG+ +A+LVA V ++ I L +IN N +
Sbjct: 72 IETLQAAILFVVFDAGLLTEDAIKEKFGEPLARLVASVVTMNAIGAL-----KINPNSRS 126
Query: 209 LGHE--------------------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 248
+ +LA+R+ +R + +A+E I+ LA+
Sbjct: 127 TEPQIDNIRRMLLAMVEDVRAVVIKLAERVCLLRAVKNADEETRVLLAREIADIYAPLAN 186
Query: 249 RLGLWALKAELEDLCFAVLQPQIFRKMRADL 279
RLG+ LK ELED+ F L P ++ + L
Sbjct: 187 RLGIGQLKWELEDISFRYLHPDTYKDIAKQL 217
>gi|359727202|ref|ZP_09265898.1| GTP pyrophosphokinase [Leptospira weilii str. 2006001855]
gi|417779516|ref|ZP_12427301.1| putative GTP diphosphokinase [Leptospira weilii str. 2006001853]
gi|410780345|gb|EKR64939.1| putative GTP diphosphokinase [Leptospira weilii str. 2006001853]
Length = 674
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 515 LYKE 518
+YKE
Sbjct: 346 MYKE 349
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 114/196 (58%), Gaps = 18/196 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E VQKA ++RAH GQFR +G+PY+ H + G IL L +D + AG+LHD
Sbjct: 27 ESVQKAYDVSERAHQGQFRLSGEPYIVHPLQVGFILYEL-------GLDEKVICAGLLHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------QLLRRHRRINVNQGTLG 210
V++D S + +FG+++ LV GV+++S I + +R+ + +
Sbjct: 80 VIEDTQYSRDDMIRDFGEDITDLVEGVTKISKIKSQSKETEAAENIRKIIVATIKDIRVI 139
Query: 211 HEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
+LAD+ HNMRT+ P K R +AQETL ++ +A RLG++ +K+ELEDL F VL P+
Sbjct: 140 LIKLADKTHNMRTLSFQLPEKQRRIAQETLSLYAPIAGRLGIYKIKSELEDLAFQVLNPE 199
Query: 271 IFRKMRADLASMWSPR 286
+++++ ++ S S R
Sbjct: 200 EYQEVKKNINSKKSER 215
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 760 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|71274878|ref|ZP_00651166.1| RelA/SpoT protein [Xylella fastidiosa Dixon]
gi|71164610|gb|EAO14324.1| RelA/SpoT protein [Xylella fastidiosa Dixon]
Length = 718
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM++K + +VYD +A+RV+V D + CY+ L
Sbjct: 234 GVCAEVSGRPKHIYSIWRKMQKKRLHFEQVYDLQAVRVMVED---------MAACYAALG 284
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW P+ GEFDDYI PK + Y+SLHTAV GP+ +EVQIRT +MH +AE G+AAH
Sbjct: 285 VVHALWAPVPGEFDDYIARPKANDYRSLHTAVLGPEERTVEVQIRTHEMHAHAELGVAAH 344
Query: 514 WLYKETGN 521
W YKE G
Sbjct: 345 WKYKEDGK 352
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR L ++ RA+AQ T I LA+RLG+W LK ELEDL F L+ +I+R
Sbjct: 143 LARQLAKMRAAGVLLESQRRALAQLTRDIHAPLANRLGIWQLKWELEDLAFCYLESEIYR 202
Query: 274 KMRADLASMWSPRNRVGYSRRITTI 298
+ + L +RV R I+ I
Sbjct: 203 SIASALDE-----SRVARERYISVI 222
>gi|409997388|ref|YP_006751789.1| GTP pyrophosphokinase [Lactobacillus casei W56]
gi|406358400|emb|CCK22670.1| GTP pyrophosphokinase [Lactobacillus casei W56]
Length = 787
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/181 (43%), Positives = 105/181 (58%), Gaps = 14/181 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA H Q RK+G+PY+ H I ILA L K TV +G LHDVV+D
Sbjct: 73 VEKAYKFAAYVHKDQVRKSGEPYIIHPIQVAGILAEL-----KMDPATVASGYLHDVVED 127
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYI------NQLLRRHRRINVNQGT---LGHEEL 214
+LG IEE FG +VA +V GV++LS + ++L HR++ + + +L
Sbjct: 128 TNITLGDIEEVFGHDVAVIVDGVTKLSKVTYVAHKDELAENHRKMLLAMAKDLRVIMVKL 187
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHNMRT+ L P K R +A ETL I+ LA RLG+ +K ELEDL L PQ + +
Sbjct: 188 ADRLHNMRTLQHLRPDKQRRIANETLEIYAPLADRLGISTIKWELEDLSLRYLNPQQYYR 247
Query: 275 M 275
+
Sbjct: 248 I 248
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 83/151 (54%), Gaps = 19/151 (12%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+ R K +YSI+ KMR K ++YD A+RV+ I+ CY++L +H
Sbjct: 283 IYGRPKHIYSIYKKMRDKHKQFDELYDLLAIRVIT---------ETIKDCYAVLGAIHTK 333
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W P+ G F DYI PK + YQS+HT V GP G LEVQIRT++MH AE+G+AAHW YKE
Sbjct: 334 WKPMPGRFKDYIAMPKANLYQSIHTTVIGPMGKPLEVQIRTEEMHHVAEYGVAAHWAYKE 393
Query: 519 ----------TGNKLQSISSMDESDIEASSS 539
TG KL + E E S +
Sbjct: 394 GQTSKVEYDKTGKKLDIFREILELQDETSDA 424
>gi|339629624|ref|YP_004721267.1| GTP pyrophosphokinase [Sulfobacillus acidophilus TPY]
gi|379007260|ref|YP_005256711.1| (p)ppGpp synthetase I SpoT/RelA [Sulfobacillus acidophilus DSM
10332]
gi|339287413|gb|AEJ41524.1| GTP pyrophosphokinase [Sulfobacillus acidophilus TPY]
gi|361053522|gb|AEW05039.1| (p)ppGpp synthetase I, SpoT/RelA [Sulfobacillus acidophilus DSM
10332]
Length = 719
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/184 (40%), Positives = 108/184 (58%), Gaps = 14/184 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
+Q+ +AI FA AH GQ R +G+PY+ H + ILA L K T+VA +LHDVV
Sbjct: 20 DQIIRAIEFADEAHRGQSRASGEPYIAHPLAVAGILADL-----KMDTPTIVAALLHDVV 74
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLGHEE------- 213
+D +L IE FG EVA+LV GV++L + + + N+ + L +
Sbjct: 75 EDTAYTLADIESRFGTEVAQLVDGVTKLDRLEVRTQEEEQAENLRKMFLAMAKDIRVILI 134
Query: 214 -LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 272
LADRLHNMRT+ LP + +A+ET+ I+ LA RLG++ +K ELEDL F LQP +
Sbjct: 135 KLADRLHNMRTLKHLPQDRVTRIAKETMEIYAPLAHRLGIFRIKWELEDLAFQYLQPAAY 194
Query: 273 RKMR 276
++M+
Sbjct: 195 QEMK 198
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 82/129 (63%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
GM +S R K LYSI+ KM ++ ++YD A+RV+V +++ CY++L
Sbjct: 227 GMVSEVSGRAKHLYSIYQKMHKQGKDFGQIYDLVAVRVLV---------ESVKDCYAVLG 277
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW P+ G F DYI PK + YQSLHT V GP G LEVQIRT +MH AE+G+AAH
Sbjct: 278 LVHSLWKPVPGRFKDYIAMPKSNLYQSLHTTVIGPHGEPLEVQIRTFEMHHTAEYGIAAH 337
Query: 514 WLYKETGNK 522
W YKE +K
Sbjct: 338 WRYKEGSSK 346
>gi|258539745|ref|YP_003174244.1| GTP pyrophosphokinase [Lactobacillus rhamnosus Lc 705]
gi|257151421|emb|CAR90393.1| GTP pyrophosphokinase [Lactobacillus rhamnosus Lc 705]
Length = 741
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 110/192 (57%), Gaps = 14/192 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA H Q RK+G+PY+ H I ILA L K +TV +G LHDVV+D
Sbjct: 28 VEKAYKFAAYVHKDQVRKSGEPYIIHPIQVAGILAEL-----KMDPETVASGYLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYI------NQLLRRHRRINVNQGT---LGHEEL 214
+LG IEE FG +VA +V GV++LS + ++L HR++ + + +L
Sbjct: 83 TNITLGDIEEVFGHDVAVIVDGVTKLSKVTYVAHKDELAENHRKMLLAMAKDLRVIMVKL 142
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHNMRT+ L P K R +A ETL I+ LA RLG+ +K +LEDL L PQ + +
Sbjct: 143 ADRLHNMRTLQHLRPDKQRRIANETLEIYAPLADRLGISTIKWKLEDLSLRYLNPQQYYR 202
Query: 275 MRADLASMWSPR 286
+ + S + R
Sbjct: 203 IAHLMNSKRTER 214
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 74/120 (61%), Gaps = 9/120 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+ R K +YSI+ KMR K ++YD A+RV+ I+ CY++L +H
Sbjct: 238 IYGRPKHIYSIYKKMRDKHKQFDELYDLLAIRVIT---------ETIKDCYAVLGAIHTK 288
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W P+ G F DYI PK + YQS+HT V GP G LEVQIRT++MH AE+G+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKANLYQSIHTTVIGPMGKPLEVQIRTEEMHHVAEYGVAAHWAYKE 348
>gi|197121709|ref|YP_002133660.1| (p)ppGpp synthetase I SpoT/RelA [Anaeromyxobacter sp. K]
gi|220916506|ref|YP_002491810.1| (p)ppGpp synthetase I SpoT/RelA [Anaeromyxobacter dehalogenans
2CP-1]
gi|196171558|gb|ACG72531.1| (p)ppGpp synthetase I, SpoT/RelA [Anaeromyxobacter sp. K]
gi|219954360|gb|ACL64744.1| (p)ppGpp synthetase I, SpoT/RelA [Anaeromyxobacter dehalogenans
2CP-1]
Length = 746
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 78/127 (61%), Gaps = 9/127 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
GM+ +S R+K +YSI+ KMR+ DV ++ D RV+V + CY L
Sbjct: 250 GMQADVSGRVKHVYSIYRKMRQLDVDFEQIQDVVGFRVIVD---------TVAECYESLG 300
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
VH LW P+ G F DYI PKP+ YQSLHT V GP G +EVQIRT++MH AE G+AAH
Sbjct: 301 FVHSLWKPVPGRFKDYIAIPKPNLYQSLHTTVVGPAGERIEVQIRTREMHRIAEEGVAAH 360
Query: 514 WLYKETG 520
W YKE G
Sbjct: 361 WAYKEKG 367
Score = 115 bits (288), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 105/188 (55%), Gaps = 16/188 (8%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
V+GY P + + ++KA ++ + H GQ RK+G+PYL H + ILA L K +
Sbjct: 32 VSGYHPDPDLDLIKKAYVYSAKVHQGQIRKSGEPYLVHPLEVAGILAEL-----KLDESS 86
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN-------QLLRRHRRINV 204
VV G+LHD ++D + I E FG E+A LV GV++LS + R++ V
Sbjct: 87 VVTGLLHDTIEDTLATKKEISELFGPEIADLVDGVTKLSQFTAANTQEEKQAENFRKMVV 146
Query: 205 NQGT---LGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 261
+ +LADR HNMRT+ A+ P +A+ETL I+ LA+RLG+ +K ELE+
Sbjct: 147 AMAKDIRVLLVKLADRTHNMRTLDAMKPESQERIARETLDIYAPLANRLGIQWIKTELEE 206
Query: 262 LCFAVLQP 269
L F L+P
Sbjct: 207 LSFKYLRP 214
>gi|116495022|ref|YP_806756.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Lactobacillus casei ATCC 334]
gi|116105172|gb|ABJ70314.1| Guanosine polyphosphate pyrophosphohydrolase/synthetase
[Lactobacillus casei ATCC 334]
Length = 742
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 109/192 (56%), Gaps = 14/192 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA H Q RK+G+PY+ H I ILA L K TV +G LHDVV+D
Sbjct: 28 VEKAYKFAAYVHKDQVRKSGEPYIIHPIQVAGILAEL-----KMDPATVASGYLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYI------NQLLRRHRRINVNQGT---LGHEEL 214
+LG IEE FG +VA +V GV++LS + ++L HR++ + + +L
Sbjct: 83 TNITLGDIEEVFGHDVAVIVDGVTKLSKVTYVAHKDELAENHRKMLLAMAKDLRVIMVKL 142
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHNMRT+ L P K R +A ETL I+ LA RLG+ +K ELEDL L PQ + +
Sbjct: 143 ADRLHNMRTLQHLRPDKQRRIANETLEIYAPLADRLGISTIKWELEDLSLRYLNPQQYYR 202
Query: 275 MRADLASMWSPR 286
+ + S + R
Sbjct: 203 IAHLMNSKRTER 214
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 83/151 (54%), Gaps = 19/151 (12%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+ R K +YSI+ KMR K ++YD A+RV+ I+ CY++L +H
Sbjct: 238 IYGRPKHIYSIYKKMRDKHKQFDELYDLLAIRVIT---------ETIKDCYAVLGAIHTK 288
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W P+ G F DYI PK + YQS+HT V GP G LEVQIRT++MH AE+G+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKANLYQSIHTTVIGPMGKPLEVQIRTEEMHHVAEYGVAAHWAYKE 348
Query: 519 ----------TGNKLQSISSMDESDIEASSS 539
TG KL + E E S +
Sbjct: 349 GQTSKVEYDKTGKKLDIFREILELQDETSDA 379
>gi|158335664|ref|YP_001516836.1| ppGpp 3'-pyrophosphohydrolase [Acaryochloris marina MBIC11017]
gi|158305905|gb|ABW27522.1| ppGpp 3'-pyrophosphohydrolase [Acaryochloris marina MBIC11017]
Length = 753
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/211 (39%), Positives = 115/211 (54%), Gaps = 21/211 (9%)
Query: 88 VDGV-DVTGYPIFNDEQ--VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSS 144
VDG D G P EQ + +A F + H GQ R +G+PY+ H + +L L S+
Sbjct: 25 VDGAEDKDGIP----EQTLICRAFNFGYQLHEGQRRASGEPYIAHPVSVAELLRDLGGSA 80
Query: 145 GKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-N 203
+ AG LHDVV+D + +IE EFG EV +LV GV++LS N + R N
Sbjct: 81 A-----MIAAGFLHDVVEDTDVTPETIEAEFGLEVRQLVEGVTKLSKFNFSTKTEREAEN 135
Query: 204 VNQGTLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 255
+ L + LADRLHNMRT+ LPP K R +AQET ++ LA+RLG+W
Sbjct: 136 FRRMFLAMAQDIRVIVVKLADRLHNMRTLEHLPPVKQRRIAQETRDVFAPLANRLGIWRF 195
Query: 256 KAELEDLCFAVLQPQIFRKMRADLASMWSPR 286
K ELEDL F L+P +R+M+ +A + R
Sbjct: 196 KWELEDLAFKYLEPDTYRRMQQLVADKRTDR 226
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 76/126 (60%), Gaps = 9/126 (7%)
Query: 397 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 456
+ +S R K L+SI KM R+ H++YD A+RV+V + CY L +VH
Sbjct: 249 LEISGRPKHLFSISQKMERQQKEFHEIYDVAAVRVIVKTN---------EECYRALAVVH 299
Query: 457 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 516
+ PI G F DYI PK + YQSLHT V G G LEVQIRT+ MH AE+G+AAHW Y
Sbjct: 300 DCFRPIPGRFKDYIGLPKSNRYQSLHTVVIGLGGRPLEVQIRTEAMHHIAEYGIAAHWKY 359
Query: 517 KETGNK 522
KE+ N+
Sbjct: 360 KESSNQ 365
>gi|307545602|ref|YP_003898081.1| GTP pyrophosphokinase [Halomonas elongata DSM 2581]
gi|307217626|emb|CBV42896.1| GTP pyrophosphokinase [Halomonas elongata DSM 2581]
Length = 761
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 88/144 (61%), Gaps = 9/144 (6%)
Query: 384 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 443
E L S G++ + R K +YSI+ KM+RK + +V+D RA+R++V P
Sbjct: 243 ETLKSLMDAQGIQHQVDGRAKHIYSIWRKMKRKRIDFSQVHDIRAVRILV---------P 293
Query: 444 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 503
+ CY++L IVH W + EFDDYI NPK +GYQSLHTAV GP+G LE+QIRT MH
Sbjct: 294 DVSDCYAVLGIVHSRWHHVPNEFDDYIANPKKNGYQSLHTAVFGPEGKVLEIQIRTFAMH 353
Query: 504 EYAEHGLAAHWLYKETGNKLQSIS 527
E AE G+ AHW YK +S S
Sbjct: 354 EEAELGVCAHWRYKGHDTSARSAS 377
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 74/150 (49%), Gaps = 15/150 (10%)
Query: 154 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRH------RR 201
A +L+ V + L +E+ FG EVA L++GV +++ I+ Q L +H R+
Sbjct: 87 AAVLYRAVRERLLGLDEVEKRFGAEVAGLISGVLQMAAISTTQMPTQGLSQHDQQDNLRK 146
Query: 202 INVN---QGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 258
+ VN + ++A+R +R + P K VA+E I+ LA RLG+ LK E
Sbjct: 147 MLVNMIDDVRVALIKIAERTCALRQVRDAPREKRLQVAREVFDIYAPLAHRLGIGHLKWE 206
Query: 259 LEDLCFAVLQPQIFRKMRADLASMWSPRNR 288
LEDL F L ++ + LA R+R
Sbjct: 207 LEDLSFRYLHEDDYKAIARQLAEKRLDRDR 236
>gi|381210458|ref|ZP_09917529.1| GTP pyrophosphokinase [Lentibacillus sp. Grbi]
Length = 733
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
+E +S R K LYSI+ KM +++ +++YD A+R++V +I+ CY++L
Sbjct: 233 NIEADISGRPKHLYSIYRKMAKQNKQFNEIYDLLAVRILVH---------SIKDCYAVLG 283
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT++MHE AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNLYQSLHTTVIGPKGDPLEVQIRTKEMHEIAEYGIAAH 343
Query: 514 WLYKE 518
W YKE
Sbjct: 344 WAYKE 348
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 102/183 (55%), Gaps = 18/183 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHDVV 161
+ +A FA+ AH QFRK+G+PY+ H + IL L +D T+ G LHDVV
Sbjct: 28 LHRAYEFAEDAHKDQFRKSGEPYIVHPVQVAGILVDL-------EMDPVTIAGGFLHDVV 80
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRR------HRRINVNQGT---LGHE 212
+D +L +E+ F +EVA LV GV++L I + HR++ V +
Sbjct: 81 EDTEVTLEQLEDSFNEEVAMLVDGVTKLGKIKYKSKEALQAENHRKMFVAMARDIRVILI 140
Query: 213 ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 272
+LADRLHNMRT+ LPP K R ++ ETL I+ LA RLG+ +K ELED L PQ +
Sbjct: 141 KLADRLHNMRTLKHLPPNKQRRISNETLEIFAPLAHRLGISTIKWELEDTALRYLNPQQY 200
Query: 273 RKM 275
++
Sbjct: 201 YRI 203
>gi|421130113|ref|ZP_15590310.1| putative GTP diphosphokinase [Leptospira kirschneri str.
2008720114]
gi|410358572|gb|EKP05728.1| putative GTP diphosphokinase [Leptospira kirschneri str.
2008720114]
Length = 674
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 515 LYKE 518
+YKE
Sbjct: 346 MYKE 349
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 114/196 (58%), Gaps = 18/196 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E VQKA ++RAH GQFR +G+PY+ H + G IL L +D + AG+LHD
Sbjct: 27 ESVQKAYDVSERAHQGQFRLSGEPYIVHPLQVGFILYEL-------GLDEKVICAGLLHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------QLLRRHRRINVNQGTLG 210
V++D S + +FG+++ LV GV+++S I + +R+ + +
Sbjct: 80 VIEDTEYSREDMIRDFGEDITDLVEGVTKISKIKSQSKETEAAENIRKIIVATIKDIRVI 139
Query: 211 HEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
+LAD+ HN+RT+ PP K R +AQETL ++ +A RLG++ +K+ELEDL F +L P
Sbjct: 140 LIKLADKTHNLRTLSFQPPEKQRRIAQETLSLYAPIAGRLGIYKIKSELEDLAFQILNPD 199
Query: 271 IFRKMRADLASMWSPR 286
+++++ ++ S S R
Sbjct: 200 EYQEVKKNINSKKSER 215
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 760 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|392549117|ref|ZP_10296254.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Pseudoalteromonas
rubra ATCC 29570]
Length = 718
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 86/135 (63%), Gaps = 9/135 (6%)
Query: 384 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 443
EL+ S G+E + R K +YSI+ KM +K+ +++D RA+RVVV +
Sbjct: 224 ELVQSKLKDAGIEAEVYGRPKHIYSIYKKMMQKNYEFDQLFDIRAMRVVVNE-------- 275
Query: 444 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 503
IQ CY L IVH W + EFDDY+ PK +GYQS+HT V GP+G +E+QIRTQ MH
Sbjct: 276 -IQDCYGALGIVHTNWRHLHKEFDDYVATPKQNGYQSIHTVVFGPEGKTVEIQIRTQAMH 334
Query: 504 EYAEHGLAAHWLYKE 518
+ AE G+AAHW+YKE
Sbjct: 335 QDAELGVAAHWMYKE 349
Score = 48.1 bits (113), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 18/188 (9%)
Query: 168 LGSIEEEFGDEVAKLVAGVSRLSYINQL------------LRRHRRINVNQGTLGHEELA 215
L +IE+ G+ VA L+ GV +++ I+ L +RR V +LA
Sbjct: 85 LEAIEQAQGENVALLLKGVEQMASISTLAHQGKGSLQIDKIRRMLLAMVEDVRAVVIKLA 144
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
+++ +R + + A+ T I+ LA+RLG+ LK ELEDL F L P ++ +
Sbjct: 145 EQICYLRAVKNASEEERVVAAKATANIFAPLANRLGIGQLKWELEDLSFRYLHPTTYKNI 204
Query: 276 RADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVP 334
L+ +R Y + +V S D A + +H+ S+ K +++
Sbjct: 205 AKQLSD--KRLDREAYMASMVELVQSKLKD---AGIEAEVYGRPKHIYSIYKKMMQKNYE 259
Query: 335 FDILSDRR 342
FD L D R
Sbjct: 260 FDQLFDIR 267
>gi|269926113|ref|YP_003322736.1| (p)ppGpp synthetase I SpoT/RelA [Thermobaculum terrenum ATCC
BAA-798]
gi|269789773|gb|ACZ41914.1| (p)ppGpp synthetase I, SpoT/RelA [Thermobaculum terrenum ATCC
BAA-798]
Length = 721
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 80/125 (64%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ ++ R K LYSI+ KM +K +++D LRV+ + + CY+ L
Sbjct: 234 GIPAEITGRRKHLYSIYRKMEQKQRSFDQIFDVLGLRVITDE---------VMQCYAALG 284
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
++H +W PI GEFDDYI PK S YQSLHTAV G DG LE+QIRT+ MHE AE+G+AAH
Sbjct: 285 VIHSIWRPIPGEFDDYIAMPKESMYQSLHTAVVGLDGKPLEIQIRTRDMHEVAEYGIAAH 344
Query: 514 WLYKE 518
W YKE
Sbjct: 345 WRYKE 349
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 112/197 (56%), Gaps = 21/197 (10%)
Query: 99 FNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILH 158
+ + +++A A +AH G++RK+G+P+++H ++ ILA L K+ + + +LH
Sbjct: 17 LDKDLIRRAYEVADKAHEGEYRKSGEPFISHPVNVALILADL-----KQDAQAIASALLH 71
Query: 159 DVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN----------------QLLRRHRRI 202
D V+D +L IE FG EV++LV G+++L+ I + LR+
Sbjct: 72 DTVEDTNLTLDDIETIFGPEVSRLVDGLTKLNKIRLSPDDEKDPKEQQAQAENLRKMFLA 131
Query: 203 NVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 262
V + +LADRLHNMRTI LP K + A+ETL I+ LA RLG++ ++ELEDL
Sbjct: 132 MVEDPRVVLIKLADRLHNMRTIEHLPRDKQLSKARETLEIYAPLAGRLGIFKFRSELEDL 191
Query: 263 CFAVLQPQIFRKMRADL 279
F VL P +R++ A +
Sbjct: 192 SFKVLYPDKYREIAAQV 208
Score = 43.5 bits (101), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 74/156 (47%), Gaps = 27/156 (17%)
Query: 677 EESEYWAVVSAV--FEGKPVDSVVSRRSSDSVAPTSMEA------------SINNKVRLL 722
+ES Y ++ +AV +GKP++ + R VA + A + +++ L
Sbjct: 305 KESMYQSLHTAVVGLDGKPLEIQIRTRDMHEVAEYGIAAHWRYKEGKKANEAAEHRITWL 364
Query: 723 RTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAA 782
R +L W +++ +S S + E + V PNG+++ L G+T D A
Sbjct: 365 RQLLEWRDEVADAQEFVESM---------KSDLLQEHIYVFTPNGDVVELPRGATPIDFA 415
Query: 783 MKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEVR 814
++ E G + VNG+LV + L++GD+V++R
Sbjct: 416 YRIHTEIGHHCVGATVNGRLVSLDYVLQNGDVVKIR 451
>gi|398338439|ref|ZP_10523142.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Leptospira
kirschneri serovar Bim str. 1051]
gi|418676031|ref|ZP_13237317.1| putative GTP diphosphokinase [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|418688085|ref|ZP_13249242.1| putative GTP diphosphokinase [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|418695002|ref|ZP_13256028.1| putative GTP diphosphokinase [Leptospira kirschneri str. H1]
gi|418739479|ref|ZP_13295863.1| putative GTP diphosphokinase [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
gi|421089191|ref|ZP_15550005.1| putative GTP diphosphokinase [Leptospira kirschneri str. 200802841]
gi|421106960|ref|ZP_15567521.1| putative GTP diphosphokinase [Leptospira kirschneri str. H2]
gi|400323796|gb|EJO71644.1| putative GTP diphosphokinase [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|409957161|gb|EKO16076.1| putative GTP diphosphokinase [Leptospira kirschneri str. H1]
gi|410002142|gb|EKO52665.1| putative GTP diphosphokinase [Leptospira kirschneri str. 200802841]
gi|410007974|gb|EKO61652.1| putative GTP diphosphokinase [Leptospira kirschneri str. H2]
gi|410737509|gb|EKQ82250.1| putative GTP diphosphokinase [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|410753279|gb|EKR10248.1| putative GTP diphosphokinase [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
Length = 674
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 515 LYKE 518
+YKE
Sbjct: 346 MYKE 349
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 114/196 (58%), Gaps = 18/196 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E VQKA ++RAH GQFR +G+PY+ H + G IL L +D + AG+LHD
Sbjct: 27 ESVQKAYDVSERAHQGQFRLSGEPYIVHPLQVGFILYEL-------GLDEKVICAGLLHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------QLLRRHRRINVNQGTLG 210
V++D S + +FG+++ LV GV+++S I + +R+ + +
Sbjct: 80 VIEDTEYSREDMIRDFGEDITDLVEGVTKISKIKSQSKETEAAENIRKIIVATIKDIRVI 139
Query: 211 HEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
+LAD+ HN+RT+ PP K R +AQETL ++ +A RLG++ +K+ELEDL F +L P
Sbjct: 140 LIKLADKTHNLRTLSFQPPEKQRRIAQETLSLYAPIAGRLGIYKIKSELEDLAFQILNPD 199
Query: 271 IFRKMRADLASMWSPR 286
+++++ ++ S S R
Sbjct: 200 EYQEVKKNINSKKSER 215
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 760 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|381179641|ref|ZP_09888490.1| (p)ppGpp synthetase I, SpoT/RelA [Treponema saccharophilum DSM
2985]
gi|380768465|gb|EIC02455.1| (p)ppGpp synthetase I, SpoT/RelA [Treponema saccharophilum DSM
2985]
Length = 613
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 83/128 (64%), Gaps = 10/128 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++V ++SR K YSI+ KMR+++ G ++YD ALR++ CY+L+
Sbjct: 244 GIKVQITSRAKHFYSIYQKMRKRNKGADELYDLLALRIIC---------TTTTECYTLIG 294
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW P+DG F DYI PK +GYQSLHT V +G LE+QIRT MH AEHG+A+H
Sbjct: 295 IVHGLWKPMDGRFKDYIAMPKSNGYQSLHTTVVC-EGKPLEIQIRTADMHNMAEHGIASH 353
Query: 514 WLYKETGN 521
WLYK+ N
Sbjct: 354 WLYKKGMN 361
Score = 79.3 bits (194), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 18/179 (10%)
Query: 119 FRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT--VVAGILHDVVDDACESLGSIEEEFG 176
R G PY+ H + G +LA ++ +D + G LH + + + +E FG
Sbjct: 54 MRSCGKPYILHPMRVGALLA-------EKGMDAQCIACGFLHSIFEIDGITTDEVESRFG 106
Query: 177 DEVAKLVAGVSRLSYIN---------QLLRRHRRINVNQGTLGHEELADRLHNMRTIYAL 227
+A +V S+++ + +R+ ++ + +LADRL MR + A+
Sbjct: 107 KTIASIVRDTSKITSLKINSKTIQQADSIRKMLFAMIDDVRVILVKLADRLDRMRNLKAI 166
Query: 228 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 286
P K R VA E L IW LA RLG+ +K+E+EDL P +F++++ +A R
Sbjct: 167 APKKQRLVAAEVLDIWAPLADRLGMQNVKSEMEDLSLKYANPDVFQQIKRIVAQKKDER 225
>gi|410938453|ref|ZP_11370300.1| putative GTP diphosphokinase [Leptospira noguchii str. 2006001870]
gi|410786378|gb|EKR75322.1| putative GTP diphosphokinase [Leptospira noguchii str. 2006001870]
Length = 680
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 241 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 291
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 292 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 351
Query: 515 LYKE 518
+YKE
Sbjct: 352 MYKE 355
Score = 125 bits (314), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 113/196 (57%), Gaps = 18/196 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E VQKA ++ AH GQFR +G+PY+ H + G IL L +D + AG+LHD
Sbjct: 33 ESVQKAYDVSEHAHQGQFRLSGEPYIVHPLQVGFILYEL-------GLDEKVICAGLLHD 85
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------QLLRRHRRINVNQGTLG 210
V++D S + +FG+++ LV GV+++S I + +R+ + +
Sbjct: 86 VIEDTEYSREDMIRDFGEDITDLVEGVTKISKIKSQSKETEAAENIRKIIVATIKDIRVI 145
Query: 211 HEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
+LAD+ HN+RT+ PP K R +AQETL ++ +A RLG++ +K+ELEDL F +L P
Sbjct: 146 LIKLADKTHNLRTLSFQPPEKQRRIAQETLSLYAPIAGRLGIYKIKSELEDLAFQILNPD 205
Query: 271 IFRKMRADLASMWSPR 286
+++++ ++ S S R
Sbjct: 206 EYQEVKKNINSKKSER 221
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 760 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 399 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 456
>gi|418702279|ref|ZP_13263190.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Bataviae str. L1111]
gi|410758798|gb|EKR25024.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Bataviae str. L1111]
Length = 674
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 515 LYKE 518
+YKE
Sbjct: 346 IYKE 349
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 115/198 (58%), Gaps = 22/198 (11%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E VQKA ++RAH GQFR +G+PY+ H + G IL L +D + AG+LHD
Sbjct: 27 ESVQKAYDVSERAHQGQFRLSGEPYIVHPLQVGFILYEL-------GLDEKVICAGLLHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH------RRINVNQGTLGHE- 212
V++D S + +FG+++ LV GV+++S I + R+I V T+
Sbjct: 80 VIEDTEYSREDMIRDFGEDITDLVEGVTKISKIKSQSKETEAAENIRKIIV--ATIKDIR 137
Query: 213 ----ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQ 268
+LAD+ HN+RT+ PP K R +AQETL ++ +A RLG++ +K+ELEDL F +L
Sbjct: 138 AILIKLADKTHNLRTLSFQPPEKQRRIAQETLSLYAPIAGRLGIYKIKSELEDLAFQILN 197
Query: 269 PQIFRKMRADLASMWSPR 286
P +++++ ++ S S R
Sbjct: 198 PDEYQEVKKNINSKKSER 215
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 760 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|422348597|ref|ZP_16429490.1| RelA/SpoT family protein [Sutterella wadsworthensis 2_1_59BFAA]
gi|404659128|gb|EKB31986.1| RelA/SpoT family protein [Sutterella wadsworthensis 2_1_59BFAA]
Length = 703
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 89/138 (64%), Gaps = 9/138 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K +YSI+ KM+RK + +++D RA+R++V ++ CY +L
Sbjct: 223 GIKAEVSGRPKHIYSIWKKMQRKHLRFDQLFDVRAVRIIVD---------TVERCYQVLS 273
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH + I E+DDYI PKP+GYQSLHT V G LE+QIRT+ MHE+AE G+AAH
Sbjct: 274 IVHENFPVISKEYDDYIAKPKPNGYQSLHTVVTDKAGRPLEIQIRTRAMHEFAELGVAAH 333
Query: 514 WLYKETGNKLQSISSMDE 531
W YKE GN + S+ ++
Sbjct: 334 WRYKEAGNSNGATSAEEQ 351
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 54/128 (42%), Gaps = 22/128 (17%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE----------------- 213
IE+ FG V LV L +N+L RR R N T E
Sbjct: 73 IEKSFGPAVNGLV---QELGQVNELSRRARSENEEANTRHQVEAMRRMFLSMCKDLRVVL 129
Query: 214 --LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
LA RL +R A A ETL ++ LA+RLG+W LK ELEDL +P
Sbjct: 130 LKLASRLQTLRWFAASKREGAEKFGTETLDLYAPLANRLGIWQLKWELEDLSLRFTRPSE 189
Query: 272 FRKMRADL 279
+R++ L
Sbjct: 190 YREIAQQL 197
>gi|90021883|ref|YP_527710.1| GTP diphosphokinase [Saccharophagus degradans 2-40]
gi|89951483|gb|ABD81498.1| RelA/SpoT family protein [Saccharophagus degradans 2-40]
Length = 746
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/123 (51%), Positives = 82/123 (66%), Gaps = 9/123 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+E + R K +YSI+ KMR+K++ +VYD RA+R++V + + CY++L I
Sbjct: 260 IEADVFGRAKHIYSIWRKMRKKNIDFSQVYDIRAIRILVNTE---------RECYTVLGI 310
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW I EFDDYI NPK +GY+SLHTAV GP LEVQIRT+ MHE AE G+ AHW
Sbjct: 311 VHALWRNIPLEFDDYIANPKENGYRSLHTAVHGPGSRVLEVQIRTKAMHEEAEFGVCAHW 370
Query: 515 LYK 517
YK
Sbjct: 371 RYK 373
Score = 47.4 bits (111), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 19/143 (13%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL-------------- 195
+++ A +L+ V + S + E FG V +L+ GV +++ I+ L
Sbjct: 85 ESLTAALLYRSVRENKISTEVVNELFGRGVHRLIDGVRQMAAISGLTNHSGESVFGQESA 144
Query: 196 -----LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 250
+R+ V+ + +LA+R +R + P K + VA E I+ LA RL
Sbjct: 145 EQAENVRKMLVAMVDDVRVALIKLAERTCAIRAVKKAPLEKRQRVAHEVADIYAPLAHRL 204
Query: 251 GLWALKAELEDLCFAVLQPQIFR 273
G+ +K ELEDL F L+P ++
Sbjct: 205 GIGHIKWELEDLSFRYLRPYDYK 227
Score = 39.7 bits (91), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 14/106 (13%)
Query: 712 EASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMR 771
EAS K+ LR +L W E++ G + + + V + + + P G ++
Sbjct: 381 EASYEGKIAWLRQVLEWHEEVG----------GSPWDDHLTASVEQDRIYLFTPEGHVID 430
Query: 772 LRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
L G+T D A + VGL + +NG++V N LK D VE+
Sbjct: 431 LPEGATPVDFAFRIHSDVGLRCRGAKINGRIVPLNHPLKTADQVEI 476
>gi|294828236|ref|NP_713265.2| guanosine polyphosphate pyrophosphohydrolase/synthetase [Leptospira
interrogans serovar Lai str. 56601]
gi|417760220|ref|ZP_12408246.1| putative GTP diphosphokinase [Leptospira interrogans str.
2002000624]
gi|417765432|ref|ZP_12413394.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|417768721|ref|ZP_12416648.1| putative GTP diphosphokinase [Leptospira interrogans serovar Pomona
str. Pomona]
gi|417776288|ref|ZP_12424129.1| putative GTP diphosphokinase [Leptospira interrogans str.
2002000621]
gi|417785522|ref|ZP_12433226.1| putative GTP diphosphokinase [Leptospira interrogans str. C10069]
gi|418666430|ref|ZP_13227853.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|418675521|ref|ZP_13236812.1| putative GTP diphosphokinase [Leptospira interrogans str.
2002000623]
gi|418682526|ref|ZP_13243741.1| putative GTP diphosphokinase [Leptospira interrogans serovar Pomona
str. Kennewicki LC82-25]
gi|418693250|ref|ZP_13254313.1| putative GTP diphosphokinase [Leptospira interrogans str. FPW2026]
gi|418705583|ref|ZP_13266447.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|418709158|ref|ZP_13269952.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|418717424|ref|ZP_13277086.1| putative GTP diphosphokinase [Leptospira interrogans str. UI 08452]
gi|418723737|ref|ZP_13282571.1| putative GTP diphosphokinase [Leptospira interrogans str. UI 12621]
gi|418731431|ref|ZP_13289830.1| putative GTP diphosphokinase [Leptospira interrogans str. UI 12758]
gi|421116511|ref|ZP_15576896.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
gi|421119978|ref|ZP_15580292.1| putative GTP diphosphokinase [Leptospira interrogans str. Brem 329]
gi|421125931|ref|ZP_15586175.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|421135462|ref|ZP_15595584.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|293386086|gb|AAN50283.2| guanosine polyphosphate pyrophosphohydrolase/synthetase [Leptospira
interrogans serovar Lai str. 56601]
gi|400325689|gb|EJO77963.1| putative GTP diphosphokinase [Leptospira interrogans serovar Pomona
str. Kennewicki LC82-25]
gi|400352369|gb|EJP04565.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|400356908|gb|EJP13066.1| putative GTP diphosphokinase [Leptospira interrogans str. FPW2026]
gi|409943787|gb|EKN89378.1| putative GTP diphosphokinase [Leptospira interrogans str.
2002000624]
gi|409949367|gb|EKN99344.1| putative GTP diphosphokinase [Leptospira interrogans serovar Pomona
str. Pomona]
gi|409951387|gb|EKO05902.1| putative GTP diphosphokinase [Leptospira interrogans str. C10069]
gi|409962535|gb|EKO26269.1| putative GTP diphosphokinase [Leptospira interrogans str. UI 12621]
gi|410011971|gb|EKO70077.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
gi|410020359|gb|EKO87162.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|410347064|gb|EKO97983.1| putative GTP diphosphokinase [Leptospira interrogans str. Brem 329]
gi|410436583|gb|EKP85695.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|410573896|gb|EKQ36937.1| putative GTP diphosphokinase [Leptospira interrogans str.
2002000621]
gi|410577683|gb|EKQ45553.1| putative GTP diphosphokinase [Leptospira interrogans str.
2002000623]
gi|410757794|gb|EKR19401.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|410764849|gb|EKR35552.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|410770494|gb|EKR45713.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|410773963|gb|EKR53984.1| putative GTP diphosphokinase [Leptospira interrogans str. UI 12758]
gi|410787021|gb|EKR80756.1| putative GTP diphosphokinase [Leptospira interrogans str. UI 08452]
gi|455665880|gb|EMF31366.1| putative GTP diphosphokinase [Leptospira interrogans serovar Pomona
str. Fox 32256]
gi|455791273|gb|EMF43089.1| putative GTP diphosphokinase [Leptospira interrogans serovar Lora
str. TE 1992]
gi|456825939|gb|EMF74313.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Canicola str. LT1962]
Length = 674
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 515 LYKE 518
+YKE
Sbjct: 346 IYKE 349
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 114/196 (58%), Gaps = 18/196 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E VQKA ++RAH GQFR +G+PY+ H + G IL L +D + AG+LHD
Sbjct: 27 ESVQKAYDVSERAHQGQFRLSGEPYIVHPLQVGFILYEL-------GLDEKVICAGLLHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------QLLRRHRRINVNQGTLG 210
V++D S + +FG+++ LV GV+++S I + +R+ + +
Sbjct: 80 VIEDTEYSREDMIRDFGEDITDLVEGVTKISKIKSQSKETEAAENIRKIIVATIKDIRVI 139
Query: 211 HEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
+LAD+ HN+RT+ PP K R +AQETL ++ +A RLG++ +K+ELEDL F +L P
Sbjct: 140 LIKLADKTHNLRTLSFQPPEKQRRIAQETLSLYAPIAGRLGIYKIKSELEDLAFQILNPD 199
Query: 271 IFRKMRADLASMWSPR 286
+++++ ++ S S R
Sbjct: 200 EYQEVKKNINSKKSER 215
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 760 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|210623794|ref|ZP_03294054.1| hypothetical protein CLOHIR_02005 [Clostridium hiranonis DSM 13275]
gi|210153376|gb|EEA84382.1| hypothetical protein CLOHIR_02005 [Clostridium hiranonis DSM 13275]
Length = 771
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/134 (47%), Positives = 83/134 (61%), Gaps = 15/134 (11%)
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K YSI+ KM+ K+ +++D A+RV+V ++ CY++L +VH LW P
Sbjct: 268 RPKHFYSIYRKMKNKNKSFEEIFDLTAVRVLVD---------TVKDCYAVLGVVHTLWKP 318
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
I G F DYI PKP+ YQSLHT V GPDG LE+QIRT +MH AE+G+AAHW YKE
Sbjct: 319 IPGRFKDYIAMPKPNMYQSLHTTVVGPDGEPLEIQIRTHEMHNIAEYGIAAHWKYKE--- 375
Query: 522 KLQSISSMDESDIE 535
IS+ E IE
Sbjct: 376 ---GISNSKEDKIE 386
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 92/172 (53%), Gaps = 14/172 (8%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
+ + KA AK AH Q RK+G+PY H + I+ + + ++TV G+LHDVV
Sbjct: 53 DTIMKAYKLAKYAHRDQKRKSGEPYFIHPLAVANIICDM-----QLDIETVSGGLLHDVV 107
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLGHEE------- 213
+D + IE F E+A LV GV++L I + + N+ + L +
Sbjct: 108 EDTEYTYEDIESIFNKEIADLVDGVTKLGKIKYRSKEETQSENLRKMFLAMAKDIRVILI 167
Query: 214 -LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 264
LADRLHNMRT+ + P KA+ A ETL I+ +A RLG+ +K ELEDL
Sbjct: 168 KLADRLHNMRTLNYMDPEKAKYKATETLEIYGGIAHRLGISKIKWELEDLAL 219
>gi|157374426|ref|YP_001473026.1| GTP diphosphokinase [Shewanella sediminis HAW-EB3]
gi|157316800|gb|ABV35898.1| GTP diphosphokinase [Shewanella sediminis HAW-EB3]
Length = 735
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 80/117 (68%), Gaps = 9/117 (7%)
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI+ KM+ KD+ +++D RA+R+V +Q CY L +VH LW
Sbjct: 251 RPKHIYSIWKKMKGKDLTFDELFDVRAVRIVT---------DRLQDCYGALGVVHTLWHH 301
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT++MHE AE G+AAHW YKE
Sbjct: 302 IPREFDDYVANPKPNGYQSIHTIVVGPEGKTVEIQIRTEQMHEDAELGVAAHWKYKE 358
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 15/146 (10%)
Query: 149 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRI----- 202
++T+ A +L + D S +EE FG +A+LV+ V ++ I L + R
Sbjct: 72 IETLQASVLFVIFDAGILSKEKLEETFGSGLARLVSSVETMNAIGALKIDNQSRAGEPQI 131
Query: 203 -NVNQGTLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 253
N+ + L E LA+R+ +R + +A+E I+ LA+RLG+
Sbjct: 132 DNIRRMLLAMVEDVRAVVIKLAERICLLREVKNAEEETRVLLAREIADIYAPLANRLGIG 191
Query: 254 ALKAELEDLCFAVLQPQIFRKMRADL 279
LK ELED+ F L P+ ++++ L
Sbjct: 192 QLKWELEDISFRYLHPETYKEIAKQL 217
>gi|383316137|ref|YP_005376979.1| RelA/SpoT family (p)ppGpp synthetase [Frateuria aurantia DSM 6220]
gi|379043241|gb|AFC85297.1| (p)ppGpp synthetase, RelA/SpoT family [Frateuria aurantia DSM 6220]
Length = 714
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 90/150 (60%), Gaps = 18/150 (12%)
Query: 373 SLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 432
SL +EAL K G++ L+ R K +YSI+ KM+RK + +YD RA+R++
Sbjct: 217 SLTMLKEALAK---------AGIQADLAGRPKHIYSIWKKMQRKSLEFSDLYDIRAVRIL 267
Query: 433 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 492
V ++ CY+ L +VH LW + GEFDDYI PK + Y+SLHTAV GP G
Sbjct: 268 VD---------SVADCYAALGVVHTLWPNLPGEFDDYIARPKGNDYRSLHTAVIGPQGKT 318
Query: 493 LEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
LEVQIRT +MH+ E G+AAHW YKE G
Sbjct: 319 LEVQIRTHEMHQINELGVAAHWRYKEGGGN 348
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 214 LADRLHNMRTIYALPP-AKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 272
LA +L MR P + RA+AQ T I LA+RLG+W LK ELEDL F LQP +
Sbjct: 137 LARQLACMRLAAQDPDDGERRALAQLTRDIHAPLANRLGIWQLKWELEDLAFRYLQPDTY 196
Query: 273 RKM 275
+++
Sbjct: 197 KRI 199
>gi|260495168|ref|ZP_05815296.1| guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [Fusobacterium
sp. 3_1_33]
gi|260197225|gb|EEW94744.1| guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [Fusobacterium
sp. 3_1_33]
Length = 369
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 109/183 (59%), Gaps = 14/183 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
++++ A+ FA+ +H GQ+RK+GD Y+ H + +IL + K DT+VAG+LHDVV
Sbjct: 21 DKIKLALGFAEESHQGQYRKSGDDYIVHPVEVAKILMDM-----KMDTDTIVAGLLHDVV 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE-------- 213
+D + I+ FGD VA LV GV++L + + N+ + L E
Sbjct: 76 EDTLIPIADIKYNFGDTVATLVDGVTKLKALPNGTKNQAE-NIRKMILAMAENIRVILIK 134
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LADRLHNMRT+ + P K +++++ETL I+ LA RLG+ +K+ELED+ F+ L F
Sbjct: 135 LADRLHNMRTLKFMKPEKQQSISKETLDIYAPLAHRLGMAKVKSELEDIAFSYLHHDEFL 194
Query: 274 KMR 276
+++
Sbjct: 195 EIK 197
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 73/126 (57%), Gaps = 9/126 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K YSI+ KM +K +YD +RV+V DK CY +L
Sbjct: 226 GIKAEVKGRFKHFYSIYRKMYQKGKEFDDIYDLMGVRVIVEDK---------ATCYHVLG 276
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH + P+ G F DYI PK + YQS+HT + GP G +E+QIRT+ M + AE G+AAH
Sbjct: 277 IVHSQYTPVPGRFKDYIAVPKSNNYQSIHTTIVGPLGKFIEIQIRTKDMDDIAEEGIAAH 336
Query: 514 WLYKET 519
W YKE
Sbjct: 337 WNYKEN 342
>gi|45656898|ref|YP_000984.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Leptospira
interrogans serovar Copenhageni str. Fiocruz L1-130]
gi|421087294|ref|ZP_15548135.1| putative GTP diphosphokinase [Leptospira santarosai str. HAI1594]
gi|421102246|ref|ZP_15562852.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|45600135|gb|AAS69621.1| guanosine polyphosphate pyrophosphohydrolases/synthetases
[Leptospira interrogans serovar Copenhageni str. Fiocruz
L1-130]
gi|410367953|gb|EKP23335.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410430403|gb|EKP74773.1| putative GTP diphosphokinase [Leptospira santarosai str. HAI1594]
Length = 674
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 515 LYKE 518
+YKE
Sbjct: 346 IYKE 349
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 114/196 (58%), Gaps = 18/196 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E VQKA ++RAH GQFR +G+PY+ H + G IL L +D + AG+LHD
Sbjct: 27 ESVQKAYDVSERAHQGQFRLSGEPYIVHPLQVGFILYEL-------GLDEKVICAGLLHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------QLLRRHRRINVNQGTLG 210
V++D S + +FG+++ LV GV+++S I + +R+ + +
Sbjct: 80 VIEDTEYSREDMIRDFGEDITDLVEGVTKISKIKSQSKETEAAENIRKIIVATIKDIRVI 139
Query: 211 HEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
+LAD+ HN+RT+ PP K R +AQETL ++ +A RLG++ +K+ELEDL F +L P
Sbjct: 140 LIKLADKTHNLRTLSFQPPEKQRRIAQETLSLYAPIAGRLGIYKIKSELEDLAFQILNPD 199
Query: 271 IFRKMRADLASMWSPR 286
+++++ ++ S S R
Sbjct: 200 EYQEVKKNINSKKSER 215
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 760 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|304385085|ref|ZP_07367431.1| GTP diphosphokinase [Pediococcus acidilactici DSM 20284]
gi|427439778|ref|ZP_18924342.1| GTP diphosphokinase [Pediococcus lolii NGRI 0510Q]
gi|304329279|gb|EFL96499.1| GTP diphosphokinase [Pediococcus acidilactici DSM 20284]
gi|425787910|dbj|GAC45130.1| GTP diphosphokinase [Pediococcus lolii NGRI 0510Q]
Length = 745
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 76/184 (41%), Positives = 106/184 (57%), Gaps = 20/184 (10%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
VQKA FA H Q+R++G+PY+ H I ILA L K +TV +G LHD V+D
Sbjct: 30 VQKACDFASYVHKEQYRQSGEPYIMHPIQVAGILANL-----KMDPETVASGFLHDTVED 84
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRRINVNQGTLGHE----- 212
+LG +EE FG +VA +V GVS++S I QL HR++ + + +
Sbjct: 85 TLITLGDVEELFGHDVAVIVDGVSKISKIKYKSNQEQLAENHRKLLL---AMSQDIRVII 141
Query: 213 -ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
+LADRLHNMRT+ L P K R ++ ETL I+ LA RLG+ +K ELED+ L PQ
Sbjct: 142 VKLADRLHNMRTLRHLRPDKQRRISNETLEIYAPLAERLGISTIKWELEDIALRYLNPQQ 201
Query: 272 FRKM 275
+ ++
Sbjct: 202 YYRI 205
Score = 112 bits (281), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 73/122 (59%), Gaps = 9/122 (7%)
Query: 397 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 456
V + R K +YSI+ KM + ++YD A+RV+ ++ CY++L +H
Sbjct: 239 VDIYGRPKHIYSIYRKMVDQHKQFSQIYDLLAVRVITD---------TVRDCYAVLGAIH 289
Query: 457 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 516
W PI G F DYI PK + YQSLHT V GP+G LE QIRT+ MH AE+G+AAHW Y
Sbjct: 290 AKWKPIPGRFKDYIAMPKANMYQSLHTTVVGPEGRPLEFQIRTEAMHRVAEYGVAAHWAY 349
Query: 517 KE 518
KE
Sbjct: 350 KE 351
>gi|157961010|ref|YP_001501044.1| (p)ppGpp synthetase I SpoT/RelA [Shewanella pealeana ATCC 700345]
gi|157846010|gb|ABV86509.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella pealeana ATCC 700345]
Length = 735
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 111/371 (29%), Positives = 170/371 (45%), Gaps = 85/371 (22%)
Query: 149 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 208
++T+ A IL V D + IEEEFG ++A LV+ V ++ I L V+ T
Sbjct: 72 IETLQAAILFVVFDAGLITQEDIEEEFGAKLAVLVSSVETMNAIGAL-------KVDNQT 124
Query: 209 LGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQ 268
E D N+R + RAV LA R+ L L ++ A +
Sbjct: 125 RSGEPQID---NIRKMLLAMVEDVRAVV-------IKLAERICL------LREIKNADEE 168
Query: 269 PQIFRKMRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKD 327
++ + ++A +++P NR+G + + +D SF H + KD
Sbjct: 169 VKVL--VAREIADIYAPLANRLGIGQL------------KWELEDISFRYL--HPQTYKD 212
Query: 328 LLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLI 387
+ + + R R F+ D +A+ L+K+L+
Sbjct: 213 IAKQ-----LDGKRLDRETFIDDFVSQLQAR----------------------LDKDLIR 245
Query: 388 STSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQC 447
+ Y R K +YSI+ KM+ K + +++D RA+R+V +Q
Sbjct: 246 AKVY---------GRPKHIYSIWKKMKGKQLKFDELFDVRAVRIVT---------DRLQD 287
Query: 448 CYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAE 507
CY L +VH LW I EFDDY+ NPKP+GYQS+HT V GP+ +E+QIRT++MHE AE
Sbjct: 288 CYGALGVVHTLWHHIPREFDDYVANPKPNGYQSIHTVVVGPEDKTVEIQIRTEQMHEDAE 347
Query: 508 HGLAAHWLYKE 518
G+AAHW YKE
Sbjct: 348 LGVAAHWKYKE 358
>gi|270291333|ref|ZP_06197555.1| GTP pyrophosphokinase [Pediococcus acidilactici 7_4]
gi|418069368|ref|ZP_12706646.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Pediococcus acidilactici MA18/5M]
gi|270280179|gb|EFA26015.1| GTP pyrophosphokinase [Pediococcus acidilactici 7_4]
gi|357536837|gb|EHJ20865.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Pediococcus acidilactici MA18/5M]
Length = 743
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 76/184 (41%), Positives = 106/184 (57%), Gaps = 20/184 (10%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
VQKA FA H Q+R++G+PY+ H I ILA L K +TV +G LHD V+D
Sbjct: 28 VQKACDFASYVHKEQYRQSGEPYIMHPIQVAGILANL-----KMDPETVASGFLHDTVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRRINVNQGTLGHE----- 212
+LG +EE FG +VA +V GVS++S I QL HR++ + + +
Sbjct: 83 TLITLGDVEELFGHDVAVIVDGVSKISKIKYKSNQEQLAENHRKLLL---AMSQDIRVII 139
Query: 213 -ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
+LADRLHNMRT+ L P K R ++ ETL I+ LA RLG+ +K ELED+ L PQ
Sbjct: 140 VKLADRLHNMRTLRHLRPDKQRRISNETLEIYAPLAERLGISTIKWELEDIALRYLNPQQ 199
Query: 272 FRKM 275
+ ++
Sbjct: 200 YYRI 203
Score = 112 bits (281), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 73/122 (59%), Gaps = 9/122 (7%)
Query: 397 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 456
V + R K +YSI+ KM + ++YD A+RV+ ++ CY++L +H
Sbjct: 237 VDIYGRPKHIYSIYRKMVDQHKQFSQIYDLLAVRVITD---------TVRDCYAVLGAIH 287
Query: 457 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 516
W PI G F DYI PK + YQSLHT V GP+G LE QIRT+ MH AE+G+AAHW Y
Sbjct: 288 AKWKPIPGRFKDYIAMPKANMYQSLHTTVVGPEGRPLEFQIRTEAMHRVAEYGVAAHWAY 347
Query: 517 KE 518
KE
Sbjct: 348 KE 349
>gi|375335787|ref|ZP_09777131.1| (p)ppGpp synthetase I SpoT/RelA [Succinivibrionaceae bacterium
WG-1]
Length = 747
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 84/128 (65%), Gaps = 9/128 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ + R K +YSI+ KM++K + +YD RA+RV+V +Q CY+ L
Sbjct: 242 GLNAEVYGRPKHIYSIWRKMQKKHLDFSGLYDVRAVRVIVD---------RLQDCYAALG 292
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH + I EFDDYI NPKP+GYQS+HT V GP+G +E+QIRT +MH+ AE G+AAH
Sbjct: 293 VVHTKYHHIPREFDDYIANPKPNGYQSIHTVVIGPNGKTVEIQIRTSEMHKNAELGVAAH 352
Query: 514 WLYKETGN 521
W YKE GN
Sbjct: 353 WKYKEGGN 360
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 15/142 (10%)
Query: 149 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI------ 202
+DT A IL+ ++ +L + +FG ++A ++ GV + I L
Sbjct: 71 LDTFKAAILYPHLEANYFTLEQAKADFGSKIANILHGVRDMEAIRFLHNLSSNTVTDSQI 130
Query: 203 -NVNQGTLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 253
NV + + E LA+R+ +R + VA+E I+ LA+RLG+
Sbjct: 131 DNVRRMLIAMVEDVRAVVIKLAERIAALREVKNADEETRVLVAKEISNIYAPLANRLGIG 190
Query: 254 ALKAELEDLCFAVLQPQIFRKM 275
LK ELEDL F L P I++++
Sbjct: 191 QLKWELEDLAFRYLHPDIYKQI 212
>gi|374334752|ref|YP_005091439.1| GTP pyrophosphokinase [Oceanimonas sp. GK1]
gi|372984439|gb|AEY00689.1| GTP pyrophosphokinase [Oceanimonas sp. GK1]
Length = 736
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+E + R K +YSI+ KM++K++ +++D RA+RVV +Q CY+ L
Sbjct: 241 GVEAEVYGRPKHIYSIWRKMQKKNLDFDELFDVRAVRVVT---------HRLQDCYAALG 291
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH W I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT +MH+ AE G+AAH
Sbjct: 292 IVHTQWRHIPREFDDYVANPKPNGYQSIHTVVIGPEGKTVEIQIRTDQMHQDAELGVAAH 351
Query: 514 WLYKE 518
W YKE
Sbjct: 352 WKYKE 356
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 20/162 (12%)
Query: 134 GRILAMLIPSSG-----KRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSR 188
GR+LA + G DT+ + +L+ V+ S + E+FGD + +L+ GV+
Sbjct: 50 GRLLAQGVEMVGILLTLSMDTDTLKSALLYPFVEQGALSPERVREDFGDSIHRLLQGVAD 109
Query: 189 LSYINQLLRRH-------RRINVNQGTLGHEE--------LADRLHNMRTIYALPPAKAR 233
+ I L H + V + L E LA+R+ +R +
Sbjct: 110 MEAIRSLQHVHSDKSNEAQVDKVRRMLLAMVEDVRAVVIKLAERITCLREVKCADEETRV 169
Query: 234 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
VA+E I+ LA+RLG+ LK ELEDL F L P+ ++++
Sbjct: 170 LVAKEIANIYAPLANRLGIGQLKWELEDLSFRYLHPETYKRI 211
>gi|385799597|ref|YP_005836001.1| (p)ppGpp synthetase I SpoT/RelA [Halanaerobium praevalens DSM 2228]
gi|309388961|gb|ADO76841.1| (p)ppGpp synthetase I, SpoT/RelA [Halanaerobium praevalens DSM
2228]
Length = 715
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 92/142 (64%), Gaps = 11/142 (7%)
Query: 377 CEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDK 436
+EA+EK L S+ +E + R K LYSI++KM+RK+V ++YD A+RV+V +
Sbjct: 212 IKEAIEKLNLTLESH--SIEADIYGRPKHLYSIYNKMKRKEVEFDEIYDLTAVRVLVEN- 268
Query: 437 NGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQ 496
++ CY +L ++H +W P+ G F DYI PK + YQSLHT V P+G LEVQ
Sbjct: 269 --------VKECYEVLGVLHEIWKPMPGRFKDYIAMPKSNMYQSLHTTVIAPNGDPLEVQ 320
Query: 497 IRTQKMHEYAEHGLAAHWLYKE 518
IRT +MH+ AE+G+AAHW YKE
Sbjct: 321 IRTYEMHKTAEYGIAAHWRYKE 342
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 110/182 (60%), Gaps = 14/182 (7%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
N + V+KA ++A++AH Q+R +G+P++ H + ILA L + + ++V+ +LHD
Sbjct: 18 NLDLVKKAYSYAEKAHKEQYRVSGEPFVEHPLGVSIILAEL-----ELDIVSIVSSLLHD 72
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYI------NQLLRRHRRINVNQGT---LG 210
VV+D S IE+EFG EVA +V GV++L+ + +Q R++ V +
Sbjct: 73 VVEDTSVSSQEIEKEFGAEVAHIVDGVTKLTRMQFKTKADQQAESLRKMFVAMAEDIRVV 132
Query: 211 HEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
+LADRLHNMRT+ L AK + ++ET+ I+ LA RLG+ +K ELEDL F L+P
Sbjct: 133 LIKLADRLHNMRTLNYLKKAKRKEKSRETIEIYAPLAHRLGMSKIKWELEDLSFRYLKPD 192
Query: 271 IF 272
++
Sbjct: 193 MY 194
>gi|170727691|ref|YP_001761717.1| (p)ppGpp synthetase I SpoT/RelA [Shewanella woodyi ATCC 51908]
gi|169813038|gb|ACA87622.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella woodyi ATCC 51908]
Length = 735
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 80/117 (68%), Gaps = 9/117 (7%)
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI+ KM+ KD+ +++D RA+R+V +Q CY L +VH LW
Sbjct: 251 RPKHIYSIWKKMKGKDLKFDELFDVRAVRIVT---------DRLQDCYGALGVVHTLWHH 301
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT++MHE AE G+AAHW YKE
Sbjct: 302 IPREFDDYVANPKPNGYQSIHTIVVGPEGKTVEIQIRTEQMHEDAELGVAAHWKYKE 358
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 15/146 (10%)
Query: 149 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL------------- 195
++T+ A +L V + S +EE FG E+++LV V ++ I L
Sbjct: 72 IETLQASVLFVVFEAGIISQEDLEERFGAELSRLVMSVETMNAIGALKVDNDSRTSDVKI 131
Query: 196 --LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 253
+RR V +LA+R+ +R + +A+E I+ LA+RLG+
Sbjct: 132 DNIRRMLLAMVEDVRAVVIKLAERICLLREVKNSDEETRVLLAREIADIYAPLANRLGIG 191
Query: 254 ALKAELEDLCFAVLQPQIFRKMRADL 279
LK ELED+ F L P+ ++++ L
Sbjct: 192 QLKWELEDISFRYLHPETYKEIAKQL 217
>gi|441523303|ref|ZP_21004929.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Gordonia sihwensis NBRC 108236]
gi|441457074|dbj|GAC62890.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Gordonia sihwensis NBRC 108236]
Length = 764
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 88/226 (38%), Positives = 122/226 (53%), Gaps = 23/226 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q+A A A+ AH GQFRK+GDPY+TH + ILA L + T+VA
Sbjct: 51 YPKADVAVLQQAYAVAEEAHSGQFRKSGDPYITHPLAVATILADLGMDT-----TTLVAA 105
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN-------QLLRRHRRINVNQGT 208
+LHD V+D SL +E +FG EVA LV GV++L + + +R+
Sbjct: 106 LLHDTVEDTSYSLEKLEADFGAEVAHLVDGVTKLDKVALGSAAEAETIRKMIIAMARDPR 165
Query: 209 LGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQ 268
+ ++ADRLHNMRT+ LPP K A+ETL + LA RLG+ +K ELEDL FA+L
Sbjct: 166 VLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMATVKWELEDLAFAILH 225
Query: 269 PQIFR---KMRAD--------LASMWSPRNRVGYSRRITTIVSSPP 303
P+ + ++ AD LA + S N + RIT V P
Sbjct: 226 PKKYEEIVRLVADRAPSRDTYLARVRSDLNTALGASRITATVEGRP 271
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 77/138 (55%), Gaps = 13/138 (9%)
Query: 398 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 457
T+ R K +SI+ KM K ++D +R++ + ++ CY+ + +VH
Sbjct: 266 TVEGRPKHYWSIYQKMIVKGKDFDDIHDLVGMRILCDE---------VRDCYAAIGVVHS 316
Query: 458 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 517
LW P+ G F DYI P YQSLHT V GP+G LEVQIRT +MH AE G+AAHW YK
Sbjct: 317 LWQPMAGRFKDYIAQPSFGVYQSLHTTVIGPEGKPLEVQIRTFEMHRTAEFGIAAHWRYK 376
Query: 518 E----TGNKLQSISSMDE 531
E G K I+ +D+
Sbjct: 377 EGRKGKGRKATDIAEVDD 394
>gi|378823441|ref|ZP_09846075.1| RelA/SpoT family protein [Sutterella parvirubra YIT 11816]
gi|378597745|gb|EHY30999.1| RelA/SpoT family protein [Sutterella parvirubra YIT 11816]
Length = 704
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/133 (45%), Positives = 87/133 (65%), Gaps = 9/133 (6%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+S R K +YSI+ KM+RK + +++D RALR++V ++ CY +L IVH
Sbjct: 229 ISGRPKHIYSIWKKMQRKHLRFDQLFDVRALRIIV---------KTVEECYQVLSIVHEH 279
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
+ I E+DDYI PKP+GYQSLHT V P G +E+QIRT+ MH++AE G+AAHW YKE
Sbjct: 280 FPVISKEYDDYIAKPKPNGYQSLHTVVTDPAGRPIEIQIRTRAMHDFAELGVAAHWRYKE 339
Query: 519 TGNKLQSISSMDE 531
GN + S+ ++
Sbjct: 340 AGNSEGATSAEEQ 352
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 72/178 (40%), Gaps = 29/178 (16%)
Query: 122 TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACES-LGSIEEEFGDEVA 180
TG+P +TH IL G R ++A V + ES IE+ FG V
Sbjct: 29 TGEPVITHADGIAGIL------RGIRDDPELLAAAYLFCVPEVVESPYDWIEKSFGPSVT 82
Query: 181 KLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE-------------------LADRLHNM 221
LV + R IN L R R + E LA RL +
Sbjct: 83 GLVQELVR---INDLSVRARSEDQEANASRQAESLRRMLLAMCKDLRVVLLKLASRLQTL 139
Query: 222 RTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 279
R + A A QETL ++ LA+RLG+W +K ELEDL +P +R + +L
Sbjct: 140 RWFASSKMAGADKFGQETLALYAPLANRLGIWQMKWELEDLSLRFTRPDEYRAIAEEL 197
>gi|84623294|ref|YP_450666.1| ATP:GTP 3'-pyrophosphotransferase [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|84367234|dbj|BAE68392.1| ATP:GTP 3'-pyrophosphotranferase [Xanthomonas oryzae pv. oryzae
MAFF 311018]
Length = 727
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 90/149 (60%), Gaps = 11/149 (7%)
Query: 375 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 432
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 220 VARERYLEAVKRTLSAALAQQGLRADVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 279
Query: 433 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 492
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV G +G
Sbjct: 280 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGQEGRT 330
Query: 493 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 331 IEIQIRTHEMHAQAELGVAAHWKYKEGGK 359
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR L + A+AQ T I LA+RLG+W +K ELEDL F L+P +R
Sbjct: 150 LARQLSRMRVADRLSKEQRHALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPDTYR 209
Query: 274 KM 275
++
Sbjct: 210 RI 211
>gi|456989321|gb|EMG24130.1| putative GTP diphosphokinase, partial [Leptospira interrogans
serovar Copenhageni str. LT2050]
Length = 493
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 515 LYKE 518
+YKE
Sbjct: 346 IYKE 349
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 114/196 (58%), Gaps = 18/196 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E VQKA ++RAH GQFR +G+PY+ H + G IL L +D + AG+LHD
Sbjct: 27 ESVQKAYDVSERAHQGQFRLSGEPYIVHPLQVGFILYEL-------GLDEKVICAGLLHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------QLLRRHRRINVNQGTLG 210
V++D S + +FG+++ LV GV+++S I + +R+ + +
Sbjct: 80 VIEDTEYSREDMIRDFGEDITDLVEGVTKISKIKSQSKETEAAENIRKIIVATIKDIRVI 139
Query: 211 HEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
+LAD+ HN+RT+ PP K R +AQETL ++ +A RLG++ +K+ELEDL F +L P
Sbjct: 140 LIKLADKTHNLRTLSFQPPEKQRRIAQETLSLYAPIAGRLGIYKIKSELEDLAFQILNPD 199
Query: 271 IFRKMRADLASMWSPR 286
+++++ ++ S S R
Sbjct: 200 EYQEVKKNINSKKSER 215
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 760 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|349574920|ref|ZP_08886850.1| GTP diphosphokinase [Neisseria shayeganii 871]
gi|348013452|gb|EGY52366.1| GTP diphosphokinase [Neisseria shayeganii 871]
Length = 736
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 82/123 (66%), Gaps = 9/123 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + +YD RA+R++V +I CY+ L +VH L
Sbjct: 257 VAGRPKHIYSIYRKMEKKKLDFDGLYDIRAVRILVD---------SIPECYTTLGLVHSL 307
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W P+ GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT +MH++ E G+AAHW YKE
Sbjct: 308 WQPVPGEFDDYIANPKGNGYKSLHTVIIGPEDKGVEVQIRTFEMHQFNEFGVAAHWRYKE 367
Query: 519 TGN 521
G
Sbjct: 368 GGK 370
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 98/196 (50%), Gaps = 29/196 (14%)
Query: 102 EQVQKAIAFAKRAHHGQ-FRKTGDPYLTHCIHTGRILAM--LIPSSGKRAVDTVVAGILH 158
+ +Q+A+A A++ + + G+P L + +++A L+P + V A +L
Sbjct: 33 QMLQRALALAEQHYPPEAHTHAGEPLLASVMGAAQMVAEMDLLP-------EAVAATLLT 85
Query: 159 DVVDDACESLGSIEEEFGDEVAKLVAGV------SRLSYINQL------------LRRHR 200
D+ + + E+ G+ V LV G+ + + I+QL +R+
Sbjct: 86 DISSYCADWPLQVAEQCGETVCGLVRGIDEVQKLTHFARIDQLGTPEERARQAEAMRKML 145
Query: 201 RINVNQGTLGHEELADRLHNMRTIYALPPA-KARAVAQETLLIWCSLASRLGLWALKAEL 259
VN + +LA R M+ + + P + + RA+A+ETL I+ LA+RLG+W LK +L
Sbjct: 146 LAMVNDIRVVLIKLALRTRTMQFVGSTPDSPEKRALAKETLDIFAPLANRLGVWQLKWQL 205
Query: 260 EDLCFAVLQPQIFRKM 275
EDL F +P+ ++++
Sbjct: 206 EDLGFRHYRPEEYKRI 221
>gi|317484827|ref|ZP_07943721.1| RelA/SpoT family protein [Bilophila wadsworthia 3_1_6]
gi|345890061|ref|ZP_08841020.1| hypothetical protein HMPREF0178_03794 [Bilophila sp. 4_1_30]
gi|316923921|gb|EFV45113.1| RelA/SpoT family protein [Bilophila wadsworthia 3_1_6]
gi|345038932|gb|EGW43306.1| hypothetical protein HMPREF0178_03794 [Bilophila sp. 4_1_30]
Length = 738
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 90/135 (66%), Gaps = 12/135 (8%)
Query: 384 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 443
E ++S++ I G T+ R+K +YSI+ KM +++ + ++D A RV+V D
Sbjct: 232 EGILSSNQIEG---TVWGRIKHIYSIYKKMTEQNLTLDDMHDILAFRVIVKD-------- 280
Query: 444 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 503
++ CY++L +VH W P+ G F DYI PK +GYQSLHT V GP+G +E+QIRT++MH
Sbjct: 281 -VRDCYAVLGLVHAQWKPVPGRFKDYISMPKANGYQSLHTTVIGPEGERIEIQIRTEEMH 339
Query: 504 EYAEHGLAAHWLYKE 518
AEHG+A+HWLYKE
Sbjct: 340 RLAEHGVASHWLYKE 354
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 110/193 (56%), Gaps = 19/193 (9%)
Query: 117 GQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFG 176
GQ R +G+PYL+H + +LA L G A +V AG+LHD V+D +L ++ EFG
Sbjct: 47 GQVRLSGEPYLSHPLAVAEVLAEL----GFDA-HSVAAGLLHDTVEDTKVTLEEVDAEFG 101
Query: 177 DEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLG--HE------ELADRLHNMRTIYAL 227
++VA +V GV+++S + + ++ N+ + L H+ +LADR+HNMRT+
Sbjct: 102 EQVADIVDGVTKISMMTFDSKEEQQAENIRKMILAMSHDIRVPIVKLADRVHNMRTLDFQ 161
Query: 228 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRN 287
K + +AQET+ I+ LA+RLGL LK ELE L F + P ++ ++ S W N
Sbjct: 162 KAHKRQRIAQETMDIYVPLANRLGLHRLKLELEGLSFKYIHPDVYAQI-----SDWLESN 216
Query: 288 RVGYSRRITTIVS 300
+V + I I++
Sbjct: 217 QVVERQLIAKIIA 229
>gi|86158972|ref|YP_465757.1| (p)ppGpp synthetase I SpoT/RelA [Anaeromyxobacter dehalogenans
2CP-C]
gi|85775483|gb|ABC82320.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Anaeromyxobacter dehalogenans 2CP-C]
Length = 746
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 78/127 (61%), Gaps = 9/127 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
GM+ +S R+K +YSI+ KMR+ DV ++ D RV+V + CY L
Sbjct: 250 GMKADVSGRVKHVYSIYRKMRQLDVDFEQIQDVIGFRVIVD---------TVAECYESLG 300
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
VH LW P+ G F DYI PKP+ YQSLHT V GP G +EVQIRT++MH AE G+AAH
Sbjct: 301 FVHSLWKPVPGRFKDYIAIPKPNLYQSLHTTVVGPAGERIEVQIRTREMHRIAEEGVAAH 360
Query: 514 WLYKETG 520
W YKE G
Sbjct: 361 WAYKEKG 367
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 108/194 (55%), Gaps = 16/194 (8%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
V+GY P + + ++KA ++ + H GQ RK+G+PYL H + ILA L K +
Sbjct: 32 VSGYHPDPDLDLIKKAYVYSAKVHQGQIRKSGEPYLVHPLEVAGILAEL-----KLDESS 86
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN-------QLLRRHRRINV 204
VV G+LHD ++D + I E FG E+A LV GV++LS + R++ V
Sbjct: 87 VVTGLLHDTIEDTLATKKEISELFGLEIADLVDGVTKLSQFTAANTQEEKQAENFRKMVV 146
Query: 205 NQGT---LGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 261
+ +LADR HNMRT+ A+ P +A+ETL I+ LA+RLG+ +K ELE+
Sbjct: 147 AMAKDIRVLLVKLADRTHNMRTLDAMKPESQERIARETLDIYAPLANRLGIQWIKTELEE 206
Query: 262 LCFAVLQPQIFRKM 275
L F L+P + ++
Sbjct: 207 LSFKYLRPADYSEL 220
>gi|299822818|ref|ZP_07054704.1| GTP diphosphokinase [Listeria grayi DSM 20601]
gi|299816347|gb|EFI83585.1| GTP diphosphokinase [Listeria grayi DSM 20601]
Length = 740
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 106/184 (57%), Gaps = 20/184 (10%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA+ AH QFRK+G+PY+ H I ILA L + TV +G LHDVV+D
Sbjct: 30 VEKAYTFARDAHKEQFRKSGEPYIIHPIQVAGILAEL-----RMDPSTVASGFLHDVVED 84
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRL------SYINQLLRRHRRINVNQGTLGHE----- 212
+L ++ EFG+EVA LV GV++L S+ Q HR++ + + +
Sbjct: 85 TPVTLDDLKAEFGEEVAMLVDGVTKLGKIKYKSHEEQQAENHRKMFI---AMAQDIRVIL 141
Query: 213 -ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
+LADRLHNMRT+ LP K R +A ETL I+ LA RLG+ +K ELED L PQ
Sbjct: 142 IKLADRLHNMRTLKHLPTQKQRRIANETLEIFAPLAHRLGISRVKWELEDTALRYLNPQQ 201
Query: 272 FRKM 275
+ ++
Sbjct: 202 YYRI 205
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 86/137 (62%), Gaps = 10/137 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
++ ++ R K +YSI+ KM + +++YD A+R++V +I+ CY++L
Sbjct: 235 NIQADITGRPKHIYSIYRKMSIQQKQFNEIYDLLAVRIIVS---------SIKDCYAVLG 285
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 286 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTTEMHQIAEYGVAAH 345
Query: 514 WLYKETGNKLQSISSMD 530
W YKE G + + +S D
Sbjct: 346 WAYKE-GKVVNAKTSFD 361
>gi|456966424|gb|EMG08042.1| RelA/SpoT domain protein, partial [Leptospira interrogans serovar
Grippotyphosa str. LT2186]
Length = 385
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 515 LYKE 518
+YKE
Sbjct: 346 IYKE 349
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 114/196 (58%), Gaps = 18/196 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E VQKA ++RAH GQFR +G+PY+ H + G IL L +D + AG+LHD
Sbjct: 27 ESVQKAYDVSERAHQGQFRLSGEPYIVHPLQVGFILYEL-------GLDEKVICAGLLHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------QLLRRHRRINVNQGTLG 210
V++D S + +FG+++ LV GV+++S I + +R+ + +
Sbjct: 80 VIEDTEYSREDMIRDFGEDITDLVEGVTKISKIKSQSKETEAAENIRKIIVATIKDIRVI 139
Query: 211 HEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
+LAD+ HN+RT+ PP K R +AQETL ++ +A RLG++ +K+ELEDL F +L P
Sbjct: 140 LIKLADKTHNLRTLSFQPPEKQRRIAQETLSLYAPIAGRLGIYKIKSELEDLAFQILNPD 199
Query: 271 IFRKMRADLASMWSPR 286
+++++ ++ S S R
Sbjct: 200 EYQEVKKNINSKKSER 215
>gi|163750001|ref|ZP_02157245.1| GTP pyrophosphokinase [Shewanella benthica KT99]
gi|161330275|gb|EDQ01256.1| GTP pyrophosphokinase [Shewanella benthica KT99]
Length = 734
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 80/117 (68%), Gaps = 9/117 (7%)
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI+ KM+ KD+ +++D RA+R+V +Q CY L +VH LW
Sbjct: 250 RPKHIYSIWKKMKGKDLKFDELFDVRAVRIVT---------DRLQDCYGALGVVHTLWHH 300
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT++MHE AE G+AAHW YKE
Sbjct: 301 IPREFDDYVANPKPNGYQSIHTIVVGPEGKTVEIQIRTEQMHEDAELGVAAHWKYKE 357
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 15/146 (10%)
Query: 149 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRI----- 202
++T+ A +L V D S S+EE FG +A LV V ++ I L + R
Sbjct: 71 IETLQASVLFVVYDAGILSKESLEESFGKGLATLVRSVETMNAIGALKINDQSRAAEPQI 130
Query: 203 -NVNQGTLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 253
N+ + L E LA+R+ +R + +A+E I+ LA+RLG+
Sbjct: 131 DNIRRMLLAMVEDVRAVVIKLAERICLLREVKNADEETRVLLAREIADIYAPLANRLGIG 190
Query: 254 ALKAELEDLCFAVLQPQIFRKMRADL 279
LK ELED+ F L PQ ++ + L
Sbjct: 191 QLKWELEDISFRYLHPQTYKDIAKQL 216
>gi|407803935|ref|ZP_11150766.1| GTP pyrophosphokinase [Alcanivorax sp. W11-5]
gi|407022185|gb|EKE33941.1| GTP pyrophosphokinase [Alcanivorax sp. W11-5]
Length = 747
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 84/127 (66%), Gaps = 9/127 (7%)
Query: 396 EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIV 455
+V + R K +YSI+ KM++K + ++VYD RA+R++V P ++ CY+ L +V
Sbjct: 258 DVQVDGRAKHIYSIWRKMQKKHLDFYEVYDVRAVRILV---------PEVRDCYAALGVV 308
Query: 456 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 515
H LW + EFDDYI PK +GYQSLHTAV GPD LEVQIRT +MH+ AE G+ AHW
Sbjct: 309 HSLWQHVPKEFDDYIATPKENGYQSLHTAVVGPDRKMLEVQIRTYEMHDDAELGVCAHWH 368
Query: 516 YKETGNK 522
YKE +
Sbjct: 369 YKEGARR 375
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 19/169 (11%)
Query: 125 PYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVA 184
PY C G +A ++ + + A +L+ V + SL +E EFG+ +A++V
Sbjct: 58 PYGIGCYRIGLEMAEILADLHADG-EALPAAVLYRAVREGHLSLLEVEREFGETIARMVE 116
Query: 185 GVSRLSYINQLLRRHRR--INVNQGTLGHE----------------ELADRLHNMRTIYA 226
GV R++ I+ +L R+ + +G L + +LA+R +R +
Sbjct: 117 GVLRMAAISAVLNPTRKPVLGQQEGQLDNVRKMLVAMVDDVRVALLKLAERTVIIRALKD 176
Query: 227 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
+ V++E I+ LA RLG+ LK ELEDL F LQP ++K+
Sbjct: 177 GDEERRLKVSREIFDIYAPLAHRLGVGQLKWELEDLSFRYLQPGAYKKV 225
>gi|148265188|ref|YP_001231894.1| (p)ppGpp synthetase I SpoT/RelA [Geobacter uraniireducens Rf4]
gi|146398688|gb|ABQ27321.1| (p)ppGpp synthetase I, SpoT/RelA [Geobacter uraniireducens Rf4]
Length = 716
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 114/201 (56%), Gaps = 18/201 (8%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P + + V+KA F + H GQ R +G+PYL H + ILA L K V TVV G+
Sbjct: 16 PACDLDLVRKAYVFCAKVHQGQTRLSGEPYLVHPMEVAGILADL-----KLDVPTVVTGL 70
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------QLLRRHRRINVNQG 207
LHD V+D +L +E FG EVA+LV GV+++ I+ + R+ N
Sbjct: 71 LHDTVEDTLTTLEELEGMFGAEVARLVDGVTKIGKIHFKTKEESQAENFRKMLLAMANDI 130
Query: 208 TLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL 267
+ +LADRLHNMRT+ P K R++A+ETL I+ +A+RLG+ +K+ELEDL F L
Sbjct: 131 RVILVKLADRLHNMRTLQYQPEPKQRSIAKETLDIYAPIANRLGISWVKSELEDLSFRYL 190
Query: 268 QPQIFRKMRADLASMWSPRNR 288
PQI+ DLAS + + +
Sbjct: 191 DPQIY----YDLASKVTKKKK 207
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/125 (50%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K LYSI+ KM+ + V I ++YD A+RV+V D I+ CY +L
Sbjct: 228 GITGEVSGRSKHLYSIYRKMQSRSVDIDEIYDLVAIRVMVED---------IRECYEVLG 278
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
I+H W PI G F DYI PK + YQSLHT V GP G +EVQIRT +MH AE G+AAH
Sbjct: 279 IIHSTWKPIPGRFKDYIAMPKGNMYQSLHTTVIGPYGERMEVQIRTGEMHRVAEAGIAAH 338
Query: 514 WLYKE 518
W YKE
Sbjct: 339 WKYKE 343
>gi|39997334|ref|NP_953285.1| GTP/GDP 3'-pyrophosphokinase and (p)ppGpp 3'-pyrophosphohydrolase
[Geobacter sulfurreducens PCA]
gi|409912678|ref|YP_006891143.1| GTP/GDP 3'-pyrophosphokinase and (p)ppGpp 3'-pyrophosphohydrolase
[Geobacter sulfurreducens KN400]
gi|39984225|gb|AAR35612.1| GTP/GDP 3'-pyrophosphokinase and (p)ppGpp 3'-pyrophosphohydrolase
[Geobacter sulfurreducens PCA]
gi|298506271|gb|ADI84994.1| GTP/GDP 3'-pyrophosphokinase and (p)ppGpp 3'-pyrophosphohydrolase
[Geobacter sulfurreducens KN400]
Length = 716
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 124/224 (55%), Gaps = 17/224 (7%)
Query: 87 IVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGK 146
I+D V VT P+ + + ++KA + + H GQ R +G+PYL H + +LA L K
Sbjct: 7 ILDKV-VTYNPVADLDLIRKAYVYCAKVHQGQTRLSGEPYLVHPMEVAGVLADL-----K 60
Query: 147 RAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------QLLR 197
V TVV G+LHD ++D + +E FG EVA LV GV+++ I+ + R
Sbjct: 61 LDVPTVVTGLLHDTIEDTLTTREELEGMFGAEVANLVDGVTKIGKIHFKTKEESQAENFR 120
Query: 198 RHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKA 257
+ N + +LADRLHNMRT+ P K R++++ETL I+ LA+RLG+ +K+
Sbjct: 121 KMLLAMANDIRVILVKLADRLHNMRTLQYQPEPKQRSISRETLDIYAPLANRLGISWIKS 180
Query: 258 ELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSS 301
ELEDL F L+PQI+ + + +A + R Y + I+ S
Sbjct: 181 ELEDLSFRYLEPQIYYDLASKVAK--KKKERESYVEEVRQIIVS 222
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 61/117 (52%), Positives = 75/117 (64%), Gaps = 9/117 (7%)
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K LYSI+ KM+ ++V I ++YD A+RV+V D I+ CY +L I+H W P
Sbjct: 236 RSKHLYSIWRKMQARNVDIDQIYDLVAIRVMVND---------IRECYEVLGIIHSTWKP 286
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
I G F DYI PK + YQSLHT V GP G +EVQIRT MH AE G+AAHW YKE
Sbjct: 287 IPGRFKDYIAMPKGNMYQSLHTTVIGPHGERMEVQIRTSDMHRVAEAGIAAHWKYKE 343
>gi|114777339|ref|ZP_01452336.1| GTP pyrophosphokinase [Mariprofundus ferrooxydans PV-1]
gi|114552121|gb|EAU54623.1| GTP pyrophosphokinase [Mariprofundus ferrooxydans PV-1]
Length = 646
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K +YSI+SKM KD +++D ALR+ V I CY++L
Sbjct: 163 GIDARVYGRPKHIYSIWSKMTHKDKQFSELFDVLALRITV---------TTIAECYTVLG 213
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
++H W I EFDDYI N KP+GYQSLHTAV GP+G +E+QIRT+ MHE+AE G+AAH
Sbjct: 214 LIHGRWHHIPKEFDDYIANTKPNGYQSLHTAVYGPEGKPVEIQIRTKAMHEFAEFGVAAH 273
Query: 514 WLYKE 518
W YKE
Sbjct: 274 WRYKE 278
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 77/153 (50%), Gaps = 20/153 (13%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYI----------NQLLRRHRRINVNQGTLGHEELADRLHN 220
I+ EF DEV +V G+ +L ++ LRR V+ + +LA R+
Sbjct: 19 IQHEFSDEVVHMVQGLEKLHGFKASQSDGQVQSERLRRMLLAMVDDVRVVLIKLAYRVQR 78
Query: 221 MRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 280
+R + + +A E+L I+ +A+RLG+ LK ELEDL F LQP+ +++ +A
Sbjct: 79 LRELSKADEETQKRIASESLEIFSPIANRLGIGQLKWELEDLSFRYLQPETYKR----IA 134
Query: 281 SMWSPR--NRVGYSRR----ITTIVSSPPLDER 307
+M + R Y ++ I T+++S +D R
Sbjct: 135 NMLEEKRGGRETYIKQVVTEINTLLNSSGIDAR 167
>gi|242280235|ref|YP_002992364.1| (p)ppGpp synthetase I SpoT/RelA [Desulfovibrio salexigens DSM 2638]
gi|242123129|gb|ACS80825.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfovibrio salexigens DSM
2638]
Length = 723
Score = 129 bits (325), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 85/123 (69%), Gaps = 9/123 (7%)
Query: 398 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 457
T+ R K +YSI KM+R+++ + +VYD A RV+V +++ CYS+L +VH
Sbjct: 232 TIYGRTKHIYSIHKKMQRQNLSLDQVYDIIAFRVIV---------ESVKDCYSVLGLVHS 282
Query: 458 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 517
+W PI G+F DYI PK + YQSLHT V GP+G +E+QIRT++M + AE+G+AAHW YK
Sbjct: 283 MWKPISGKFKDYISIPKANMYQSLHTTVIGPEGERIEIQIRTEEMQQVAEYGVAAHWQYK 342
Query: 518 ETG 520
E+G
Sbjct: 343 ESG 345
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 108/181 (59%), Gaps = 14/181 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+Q+A F+ RAH GQ R +G+PYL H +H ++LA + + TV AG+LHD V+D
Sbjct: 23 IQRAYVFSARAHEGQVRLSGEPYLAHPLHVAKLLADM-----RLDEPTVAAGLLHDTVED 77
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLGHEE--------L 214
++ I + FG+EVA +V GV+++S ++ + + N+ + L E L
Sbjct: 78 TDTTIDEIADLFGEEVADIVDGVTKISMMDFESKAIAKAENIRKMILAMAEDIRVLMVKL 137
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHNMRT+ K +AQET+ I+ LA+RLGL+ +K +LEDLC L+P +++
Sbjct: 138 ADRLHNMRTLDFQKSYKQLLIAQETMDIYSPLANRLGLYMVKRDLEDLCLYYLKPDVYQD 197
Query: 275 M 275
+
Sbjct: 198 I 198
>gi|384084494|ref|ZP_09995669.1| (p)ppGpp synthetase I SpoT/RelA [Acidithiobacillus thiooxidans ATCC
19377]
Length = 759
Score = 129 bits (325), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 89/146 (60%), Gaps = 11/146 (7%)
Query: 378 EEALEK--ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGD 435
+EA++K + L+ + G E +S R K +YSI+SKM++K + + D A RV+V D
Sbjct: 245 KEAVQKIEQALLDRLHQEGFEAQVSGREKHVYSIYSKMQKKGMAFSSILDLHAFRVIVAD 304
Query: 436 KNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEV 495
+ CY +L I+H L+ PI G F DYI PK +GYQSLHT + GP G +EV
Sbjct: 305 ---------VDTCYRVLGIIHSLYRPIPGRFKDYIAIPKSNGYQSLHTVLLGPFGHPVEV 355
Query: 496 QIRTQKMHEYAEHGLAAHWLYKETGN 521
QIRT+ MH AE G+AAHWLYK N
Sbjct: 356 QIRTEDMHRVAEAGVAAHWLYKTGMN 381
Score = 105 bits (262), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 102/177 (57%), Gaps = 14/177 (7%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
+V++A A AH Q R++G+PY+ H + ILA L + + TV A +LHDV++
Sbjct: 57 RVREAYELALAAHGEQTRRSGEPYIHHPVAVACILAEL-----QLDIFTVQAALLHDVIE 111
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLGHE--------E 213
D S ++ E FG EVA++V GVS+L + R + N + L +
Sbjct: 112 DCGISKEALGERFGPEVAEMVDGVSKLGQVRFETREEAQAENFRKMFLAMSRDIRVVLIK 171
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
LADRLHNMRT+ + P K R +++ETL I+ +A RLG+ A++ ELE+L F+ L P+
Sbjct: 172 LADRLHNMRTMGVMTPEKRRRISRETLDIYAPIAQRLGIHAIRIELEELAFSHLYPK 228
>gi|373857672|ref|ZP_09600413.1| RelA/SpoT family protein [Bacillus sp. 1NLA3E]
gi|372452804|gb|EHP26274.1| RelA/SpoT family protein [Bacillus sp. 1NLA3E]
Length = 731
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 79/183 (43%), Positives = 104/183 (56%), Gaps = 14/183 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E V+KA FAK AH Q+RK+G+PY+ H I ILA L + +TV AG LHDVV
Sbjct: 26 EMVKKAYDFAKHAHRDQYRKSGEPYIIHPIQVAGILADL-----EMDPETVAAGFLHDVV 80
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRRINVNQGT---LGHE 212
+D +L I+ F DEVA LV GV++L I Q HR++ V +
Sbjct: 81 EDTSVTLEDIKTAFNDEVAMLVDGVTKLGKIKYKSHEEQQAENHRKMFVAMAQDIRVILI 140
Query: 213 ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 272
+LADRLHNMRT+ LP K R ++ ETL I+ LA RLG+ +K ELED L PQ +
Sbjct: 141 KLADRLHNMRTLKHLPFEKQRRISNETLEIFAPLAHRLGISKVKWELEDTALRYLNPQQY 200
Query: 273 RKM 275
++
Sbjct: 201 YRI 203
Score = 129 bits (323), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 86/137 (62%), Gaps = 10/137 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
++ LS R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L
Sbjct: 233 SIKAELSGRPKHIYSIYRKMALQNKQFNEIYDLLAVRIIVN---------SIKDCYAVLG 283
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MHE AE G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTSEMHEIAEFGIAAH 343
Query: 514 WLYKETGNKLQSISSMD 530
W YKE G ISS +
Sbjct: 344 WAYKE-GKSASDISSYE 359
>gi|310829081|ref|YP_003961438.1| (p)ppGpp synthetase I [Eubacterium limosum KIST612]
gi|308740815|gb|ADO38475.1| (p)ppGpp synthetase I [Eubacterium limosum KIST612]
Length = 725
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+E + R K YSI+ KM+ ++ ++YD A+RV+V +++ CY +L
Sbjct: 234 GIEAKIYGRSKHFYSIYRKMKAQNRNFDEIYDLIAVRVIVD---------SVKDCYGVLG 284
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH W PI G F DYI PKP+ YQS+HT V GP+G E+QIRT++MHE AE+G+AAH
Sbjct: 285 IVHTQWKPIPGRFKDYIAMPKPNMYQSIHTTVIGPNGDPFEIQIRTKEMHETAEYGIAAH 344
Query: 514 WLYKE 518
W YKE
Sbjct: 345 WKYKE 349
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 96/182 (52%), Gaps = 14/182 (7%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P + E + KA A AH Q R +G+ Y+ H + ILA K +T+VA I
Sbjct: 22 PDADTELILKAYHLADGAHKDQKRLSGEAYIIHPVSVAYILA-----EYKMDTETIVAAI 76
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN-QLLRRHRRINVNQGTLGHEE-- 213
LHDV++D + I+E F ++VA LV GV+++ I Q + N+ + L +
Sbjct: 77 LHDVIEDTSYTYDDIKEMFNEQVADLVEGVTKIGKIEYQSKEESQAENLRKMVLAMSKDI 136
Query: 214 ------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL 267
L DRLHNMRT+ + +K ++ETL I+ +A+RLG+ +KAELEDL L
Sbjct: 137 RVILIKLVDRLHNMRTLEYMKESKQIEKSRETLDIYAPIANRLGIQTIKAELEDLALKYL 196
Query: 268 QP 269
P
Sbjct: 197 DP 198
Score = 39.3 bits (90), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 712 EASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMR 771
E NK+ LR +L W+++L + L ++ N E V V P G+++
Sbjct: 358 ELRYENKMSWLRQILEWQKELDNANDLVETIKVDLLN---------EEVYVFTPQGKVVE 408
Query: 772 LRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
L GS D A + VG VNG++V N L +GDIVE+
Sbjct: 409 LPMGSCPLDFAYRIHSDVGNSCVGAKVNGKIVPLNYTLNNGDIVEI 454
>gi|294141949|ref|YP_003557927.1| GTP pyrophosphokinase [Shewanella violacea DSS12]
gi|293328418|dbj|BAJ03149.1| GTP pyrophosphokinase [Shewanella violacea DSS12]
Length = 734
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 79/117 (67%), Gaps = 9/117 (7%)
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI+ KM KD+ +++D RA+R+V +Q CY L +VH LW
Sbjct: 250 RPKHIYSIWKKMEGKDLKFDELFDVRAVRIVT---------DRLQDCYGALGVVHTLWHH 300
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT++MHE AE G+AAHW YKE
Sbjct: 301 IPREFDDYVANPKPNGYQSIHTIVMGPEGKTVEIQIRTEQMHEDAELGVAAHWKYKE 357
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 15/146 (10%)
Query: 149 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRI----- 202
++T+ A +L V D S S+EE FG +A LV V ++ I L + R
Sbjct: 71 IETLQASVLFVVYDAGILSKESLEESFGKRLATLVCSVETMNAIGALKINNQSRAAEPQI 130
Query: 203 -NVNQGTLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 253
N+ + L E LA+R+ +R + +A+E I+ LA+RLG+
Sbjct: 131 DNIRRMLLAMVEDVRAVVIKLAERICLLREVKNADEETRVLLAREIADIYAPLANRLGIG 190
Query: 254 ALKAELEDLCFAVLQPQIFRKMRADL 279
LK ELED+ F L P ++ + L
Sbjct: 191 QLKWELEDISFRYLHPTTYKDIAKQL 216
>gi|328951506|ref|YP_004368841.1| (p)ppGpp synthetase I SpoT/RelA [Marinithermus hydrothermalis DSM
14884]
gi|328451830|gb|AEB12731.1| (p)ppGpp synthetase I, SpoT/RelA [Marinithermus hydrothermalis DSM
14884]
Length = 735
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 107/179 (59%), Gaps = 16/179 (8%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
+VQ+A+ FA AH GQ RK+GDP++TH + ILA L K DT++AG+LHD V+
Sbjct: 29 RVQEALEFAFTAHDGQHRKSGDPFITHPVAVAGILAEL-----KMDEDTLIAGLLHDTVE 83
Query: 163 DACESLGSIEEEFGDEVAKLVAG---VSRLSYINQLLRRHRRINVNQGTLGHEE------ 213
D +L +IE FG V ++V G VS+L I + + + N+ Q + E
Sbjct: 84 DTDVTLDAIEARFGPTVRRIVEGETKVSKLPKIAESIEDEQAENLRQMFIAMTEDVRIII 143
Query: 214 --LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
LADRLHNMRT+ +PP K + +++ETL I+ LA RLG+ +K ELEDL F L P+
Sbjct: 144 VKLADRLHNMRTLEFMPPEKQQRISRETLEIFAPLAHRLGIGQIKWELEDLAFRYLHPE 202
Score = 125 bits (314), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 63/127 (49%), Positives = 81/127 (63%), Gaps = 4/127 (3%)
Query: 396 EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI----QCCYSL 451
E T++ R K LYSI+ KM R + ++YD ALRV++ + + A Q CY +
Sbjct: 245 EYTVTGRTKHLYSIWKKMERDGKTLEQIYDLLALRVILDPRPSSDPEEAKAREKQVCYHV 304
Query: 452 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 511
+ +VH LW PI G DYI PKP+GYQSLHT V G LEVQIRT++MH AE+G+A
Sbjct: 305 IGLVHALWQPIPGRVKDYIAMPKPNGYQSLHTTVITWQGMPLEVQIRTREMHRIAEYGIA 364
Query: 512 AHWLYKE 518
AHWLYKE
Sbjct: 365 AHWLYKE 371
Score = 39.3 bits (90), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 33/145 (22%)
Query: 689 FEGKPVDSVVSRRSSDSVAPTSMEA------------SINNKVRLLRTMLRWEEQLRSE- 735
++G P++ + R +A + A + +V LR + W+++ S
Sbjct: 341 WQGMPLEVQIRTREMHRIAEYGIAAHWLYKEGLTNPEEVKRRVSWLRAIQEWQQEFSSSR 400
Query: 736 ---ASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLE-GKL 791
++ + LGG+ V V P G+I+ L G+T D A + E G
Sbjct: 401 EFVEAVTKDLLGGR-------------VFVFTPKGQIINLPKGATPVDFAYHIHTEVGHS 447
Query: 792 VL---VNGQLVLPNTELKDGDIVEV 813
++ VNG++V + EL++ DIVE+
Sbjct: 448 MIGAKVNGRIVPLSYELQNADIVEI 472
>gi|365835926|ref|ZP_09377334.1| GTP diphosphokinase [Hafnia alvei ATCC 51873]
gi|364565046|gb|EHM42783.1| GTP diphosphokinase [Hafnia alvei ATCC 51873]
Length = 747
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 104/174 (59%), Gaps = 19/174 (10%)
Query: 346 KFLHDLAKSSEAQKKAKVVQDAGIALTSLV-ACEEALEKELLISTSYIPGMEVTLSSRLK 404
++LH E +K AK++ + I + EAL KE+ G++ + R K
Sbjct: 204 RYLH----PDEYKKIAKLLHERRIDREQFIDNFVEALRKEMAKE-----GVKAEIYGRPK 254
Query: 405 SLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDG 464
+YSI+ KM++K + +++D RA+R+VV +Q CY+ L IVH + +
Sbjct: 255 HIYSIWRKMQKKALAFDELFDVRAVRIVV---------ERLQDCYAALGIVHTHYRHLPN 305
Query: 465 EFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
EFDDY+ NPKP+GYQS+HT V GP G LE+QIRT++MHE AE G+AAHW YKE
Sbjct: 306 EFDDYVANPKPNGYQSIHTVVLGPRGKTLEIQIRTRQMHEDAELGVAAHWKYKE 359
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 15/141 (10%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL-------------- 195
D++ +L +V+ ++EE+FG E+ LV GV + I L
Sbjct: 74 DSMRTALLFPLVEANVIDRETVEEDFGKEITNLVHGVLEMDAIRALKATQNDSGASEQVD 133
Query: 196 -LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 254
+RR V +LA+R+ ++R + P + A+E I+ LA+RLG+
Sbjct: 134 NIRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEEERVLAAKECFNIYAPLANRLGIGQ 193
Query: 255 LKAELEDLCFAVLQPQIFRKM 275
LK ELED CF L P ++K+
Sbjct: 194 LKWELEDFCFRYLHPDEYKKI 214
>gi|317491025|ref|ZP_07949461.1| RelA/SpoT family protein [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316920572|gb|EFV41895.1| RelA/SpoT family protein [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 747
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 104/174 (59%), Gaps = 19/174 (10%)
Query: 346 KFLHDLAKSSEAQKKAKVVQDAGIALTSLV-ACEEALEKELLISTSYIPGMEVTLSSRLK 404
++LH E +K AK++ + I + EAL KE+ G++ + R K
Sbjct: 204 RYLH----PDEYKKIAKLLHERRIDREQFIDNFVEALRKEMAKE-----GVKAEIYGRPK 254
Query: 405 SLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDG 464
+YSI+ KM++K + +++D RA+R+VV +Q CY+ L IVH + +
Sbjct: 255 HIYSIWRKMQKKALAFDELFDVRAVRIVV---------ERLQDCYAALGIVHTHYRHLPN 305
Query: 465 EFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
EFDDY+ NPKP+GYQS+HT V GP G LE+QIRT++MHE AE G+AAHW YKE
Sbjct: 306 EFDDYVANPKPNGYQSIHTVVLGPRGKTLEIQIRTRQMHEDAELGVAAHWKYKE 359
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 15/141 (10%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL-------------- 195
D++ +L +V+ ++EE+FG E+ LV GV + I L
Sbjct: 74 DSMRTALLFPLVEAKVIDRETVEEDFGKEITNLVHGVLEMDAIRALKATQNDSGASEQVD 133
Query: 196 -LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 254
+RR V +LA+R+ ++R + P + A+E I+ LA+RLG+
Sbjct: 134 NIRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEEERVLAAKECFNIYAPLANRLGIGQ 193
Query: 255 LKAELEDLCFAVLQPQIFRKM 275
LK ELED CF L P ++K+
Sbjct: 194 LKWELEDFCFRYLHPDEYKKI 214
>gi|427418396|ref|ZP_18908579.1| (p)ppGpp synthetase, RelA/SpoT family [Leptolyngbya sp. PCC 7375]
gi|425761109|gb|EKV01962.1| (p)ppGpp synthetase, RelA/SpoT family [Leptolyngbya sp. PCC 7375]
Length = 763
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 66/135 (48%), Positives = 85/135 (62%), Gaps = 9/135 (6%)
Query: 397 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 456
V +SSR K LYSI+ KM+R+ H++YD A+R++V K CY L +VH
Sbjct: 258 VEISSRPKHLYSIYRKMQRQKKDFHQIYDIAAVRIIVSTKVE---------CYRALAVVH 308
Query: 457 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 516
+ PI G F DYI PK + YQSLHTAV G G +EVQIRT +MH AE+G+AAHW Y
Sbjct: 309 DQFKPIPGRFKDYIGLPKANRYQSLHTAVIGEQGRPIEVQIRTMEMHHVAEYGIAAHWKY 368
Query: 517 KETGNKLQSISSMDE 531
KETGN +++ DE
Sbjct: 369 KETGNSNTKVNAEDE 383
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 104/189 (55%), Gaps = 14/189 (7%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P N++ V +A FA + H GQ R +G+PY+ H + IL L G A+ + AG
Sbjct: 42 PKDNNQLVCRAFEFAYQLHKGQMRASGEPYIAHPVAVANILRSL---GGDSAM--IAAGF 96
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLGHEE-- 213
LHDVV+D S IE FG EV ++V GV++LS + R+ N + L +
Sbjct: 97 LHDVVEDTDVSADEIEAHFGAEVRQMVEGVTKLSKFQFNSKTERQAENFRRMFLAMAQDI 156
Query: 214 ------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL 267
LADRLHNMRT+ LPP K A ET+ I+ LA+RLG+ +K ELEDL F L
Sbjct: 157 RVIVVKLADRLHNMRTLQHLPPEKQVQKACETIEIFAPLANRLGIGRMKWELEDLSFKYL 216
Query: 268 QPQIFRKMR 276
+ +++++
Sbjct: 217 EESSYQEIK 225
>gi|186685647|ref|YP_001868843.1| (p)ppGpp synthetase I SpoT/RelA [Nostoc punctiforme PCC 73102]
gi|186468099|gb|ACC83900.1| (p)ppGpp synthetase I, SpoT/RelA [Nostoc punctiforme PCC 73102]
Length = 757
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 104/182 (57%), Gaps = 14/182 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ +A FA + H GQ+RK+G+PY+ H I +L L S+ + AG LHDVV+D
Sbjct: 44 IGRAFEFAYQLHQGQYRKSGEPYIAHPIAVADLLHDLGGSAA-----MIAAGFLHDVVED 98
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------QLLRRHRRINVNQGTLGHEEL 214
+ IEE FG EV +LV GV++LS IN + RR + +L
Sbjct: 99 TEVTSQEIEERFGAEVRQLVEGVTKLSKINFTSKTESQAENFRRMFLAMAQDIRVIVVKL 158
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHNMRT+ + A R AQET I+ LA+RLG+W +K ELEDL F L+P+ FR+
Sbjct: 159 ADRLHNMRTLQYMSEASRRRSAQETRDIFAPLANRLGIWRIKWELEDLAFKYLEPEAFRQ 218
Query: 275 MR 276
M+
Sbjct: 219 MQ 220
Score = 123 bits (308), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/135 (48%), Positives = 82/135 (60%), Gaps = 11/135 (8%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+S R K LYSI+ KM R+ H++YD ALR++V + CY L +VH
Sbjct: 255 ISGRPKHLYSIYQKMHRQQKEFHEIYDLAALRIIVQSN---------EECYRALAVVHDA 305
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
+ PI G F DYI PKP+ YQSLHT V G G LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 306 FRPIPGRFKDYIGLPKPNRYQSLHTGVIGLTGRPLEVQIRTIEMHHIAEYGIAAHWKYKE 365
Query: 519 TGNKLQSISSMDESD 533
TG SIS + +D
Sbjct: 366 TGGS--SISHLTGTD 378
Score = 41.2 bits (95), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 13/102 (12%)
Query: 716 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 775
++K LR +L W+ L+ S K N D V V P G+++ L G
Sbjct: 378 DDKFTWLRQLLEWQTDLKDAQEYLDSV---KDNLFEDDVY------VFTPKGDVVPLSPG 428
Query: 776 STAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
ST D A + VG VNG++V +T L++GDIVEV
Sbjct: 429 STTVDFAYRIHTEVGNHCSGARVNGRMVSLSTRLQNGDIVEV 470
>gi|126175347|ref|YP_001051496.1| (p)ppGpp synthetase I SpoT/RelA [Shewanella baltica OS155]
gi|386342093|ref|YP_006038459.1| (p)ppGpp synthetase I SpoT/RelA [Shewanella baltica OS117]
gi|125998552|gb|ABN62627.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella baltica OS155]
gi|334864494|gb|AEH14965.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella baltica OS117]
Length = 736
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 63/130 (48%), Positives = 82/130 (63%), Gaps = 9/130 (6%)
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI+ KM+ K + +++D RA+R+V +Q CY L +VH LW
Sbjct: 251 RPKHIYSIWRKMKGKHLKFDELFDVRAVRIVTD---------RLQDCYGALGVVHTLWHH 301
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRTQ MHE AE G+AAHW YKE N
Sbjct: 302 IPREFDDYVANPKPNGYQSIHTVVVGPEGKTVEIQIRTQDMHEDAELGVAAHWKYKEGNN 361
Query: 522 KLQSISSMDE 531
S +E
Sbjct: 362 HSGKQSGYEE 371
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 25/151 (16%)
Query: 149 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 208
++T+ A IL V D + +I+E+FG+ +A+LVA V ++ I L +IN N +
Sbjct: 72 IETLQAAILFVVFDAGLLTEDAIKEKFGEPLARLVASVVTMNAIGAL-----KINPNSRS 126
Query: 209 LGHE--------------------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 248
+ +LA+R+ +R + +A+E I+ LA+
Sbjct: 127 TEPQIDNIRRMLLAMVEDVRAVVIKLAERVCLLRAVKNADEETRVLLAREIADIYAPLAN 186
Query: 249 RLGLWALKAELEDLCFAVLQPQIFRKMRADL 279
RLG+ LK ELED+ F L P ++ + L
Sbjct: 187 RLGIGQLKWELEDISFRYLHPDTYKDIAKQL 217
>gi|403384230|ref|ZP_10926287.1| GTP pyrophosphokinase [Kurthia sp. JC30]
Length = 730
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 97/167 (58%), Gaps = 15/167 (8%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
++ LS R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L I
Sbjct: 234 IQAELSGRPKHIYSIYKKMQSQHKQFNEIYDLLAIRVLVD---------SIKDCYAVLGI 284
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW P+ G F DYI PK + YQSLHT V GP G LEVQIRT +MH AE+G+AAHW
Sbjct: 285 VHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVIGPYGDPLEVQIRTNEMHNIAEYGVAAHW 344
Query: 515 LYKETGNKLQSISSMDES-----DIEASSSLSKDTDDH-NPLDTDLF 555
YKE N S +D +I S+S D ++ L DLF
Sbjct: 345 AYKEGKNAATEKSDIDSKLTWFREILEFQSVSNDAEEFMESLKFDLF 391
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 104/181 (57%), Gaps = 14/181 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V++A A+ AH QFR +G+PY+ H + ILA L + +TV AG LHDVV+D
Sbjct: 28 VRRAYELAREAHKEQFRSSGEPYIVHPVQVAGILADL-----QMDPETVSAGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRRINVNQGT---LGHEEL 214
+ + E+FG+EVA LV GV++L I Q HR++ V + +L
Sbjct: 83 TEVTRDDLVEQFGEEVAMLVDGVTKLGKIKYKSKKEQQAENHRKMFVAMAQDIRVILIKL 142
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHNMRT+ LP K R +++ETL I+ LA RLG+ A+K ELED L PQ + +
Sbjct: 143 ADRLHNMRTLKHLPVEKQRRISKETLEIFAPLAHRLGISAIKWELEDTALRYLNPQQYYR 202
Query: 275 M 275
+
Sbjct: 203 I 203
>gi|427706762|ref|YP_007049139.1| (p)ppGpp synthetase I SpoT/RelA [Nostoc sp. PCC 7107]
gi|427359267|gb|AFY41989.1| (p)ppGpp synthetase I, SpoT/RelA [Nostoc sp. PCC 7107]
Length = 756
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 78/190 (41%), Positives = 108/190 (56%), Gaps = 14/190 (7%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A FA + HHGQFRK+G+PY+ H + +L L G A+ + AG LHDVV+D
Sbjct: 45 RAFTFAYQLHHGQFRKSGEPYICHPVAVAGLLRDL---GGSPAM--IAAGFLHDVVEDTD 99
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYIN---------QLLRRHRRINVNQGTLGHEELAD 216
++ IEE FG EV LV GV++LS IN + RR + +LAD
Sbjct: 100 VTIEEIEELFGSEVRLLVEGVTKLSKINFKSKTESQAENFRRMFLAMAQDIRVIVVKLAD 159
Query: 217 RLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 276
RLHNMRT+ + R AQET I+ LA+RLG+W +K ELEDL F L+P+ FR+M+
Sbjct: 160 RLHNMRTLQYMSEDSRRRSAQETRDIFAPLANRLGIWHIKWELEDLAFKYLEPEAFRQMQ 219
Query: 277 ADLASMWSPR 286
++ + R
Sbjct: 220 QHVSEKRTAR 229
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 90/160 (56%), Gaps = 12/160 (7%)
Query: 375 VACEEALEKELLISTSYIPGMEV---TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRV 431
A EE L K I +P + +S R K LYSI+ KM+R+ H++YD ALR+
Sbjct: 227 TAREEKLAKATEILRERLPHAGIHCLDISGRPKHLYSIYQKMQRQQKEFHEIYDLAALRI 286
Query: 432 VVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGS 491
+V + CY L +VH + PI G F DYI PKP+ YQSLHT V G G
Sbjct: 287 IVQTN---------EECYRALAVVHDAFRPIPGRFKDYIGLPKPNRYQSLHTGVIGLTGR 337
Query: 492 ALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDE 531
LE+QIRT +MH AE+G+AAHW YKETG ++ DE
Sbjct: 338 PLEIQIRTLEMHHIAEYGIAAHWKYKETGGSNSQFTASDE 377
Score = 39.3 bits (90), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 13/102 (12%)
Query: 716 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 775
+ K LR +L W+ L+ S K N D V V P G+++ L G
Sbjct: 376 DEKFTWLRQLLEWQSDLKDAQEYLDSV---KDNLFEDDVY------VFTPKGDVVSLNPG 426
Query: 776 STAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
ST+ D A + VG VNG++V +T L +GDIVE+
Sbjct: 427 STSIDFAYRIHTEVGNHCSGSKVNGRIVPLSTRLHNGDIVEI 468
>gi|88858178|ref|ZP_01132820.1| (p)ppGpp synthetase I (GTP pyrophosphokinase) [Pseudoalteromonas
tunicata D2]
gi|88819795|gb|EAR29608.1| (p)ppGpp synthetase I (GTP pyrophosphokinase) [Pseudoalteromonas
tunicata D2]
Length = 721
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ + R K +YSI+ KM +K+ +++D RALRVVV DK IQ CY+ L
Sbjct: 234 GIGAQVYGRPKHIYSIYKKMYKKNYEFDQLFDIRALRVVV-DK--------IQDCYAALG 284
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH W ++ EFDDYI PK +GYQS+HT V GP+G +E+QIRT +MH+ AE G+AAH
Sbjct: 285 IVHTNWRHLNKEFDDYIATPKTNGYQSIHTVVVGPEGKTVEIQIRTHEMHQDAELGVAAH 344
Query: 514 WLYKE 518
WLYKE
Sbjct: 345 WLYKE 349
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 12/120 (10%)
Query: 168 LGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI----NVNQGTLGHEE--------LA 215
L +IE++ G VA L++GV +++ I+ L + + N+ + L E LA
Sbjct: 85 LETIEKQLGKSVAILLSGVVQMATISMLAYQDKESVQIDNIRRMLLAMVEDVRAVVIKLA 144
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
++ ++R + + A+ET I+ LA+RLG+ LK ELEDL F L P ++K+
Sbjct: 145 QQVCHLRAVKNATEEERVIAAKETANIFAPLANRLGIGQLKWELEDLSFRYLHPDTYKKI 204
>gi|421538642|ref|ZP_15984817.1| GTP-pyrophosphokinase [Neisseria meningitidis 93003]
gi|402316312|gb|EJU51861.1| GTP-pyrophosphokinase [Neisseria meningitidis 93003]
Length = 737
Score = 129 bits (324), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 60/122 (49%), Positives = 81/122 (66%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V + I CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLTFDGLFDIRAVRILVDN---------IPECYTTLGIVHSL 308
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 519 TG 520
G
Sbjct: 369 GG 370
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 213 ELADRLHNMRTIYALPPA-KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
+LA R ++ + P + + RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+
Sbjct: 160 KLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEK 219
Query: 272 FRKM 275
+R++
Sbjct: 220 YREI 223
>gi|332711840|ref|ZP_08431770.1| (p)ppGpp synthetase, RelA/SpoT family [Moorea producens 3L]
gi|332349168|gb|EGJ28778.1| (p)ppGpp synthetase, RelA/SpoT family [Moorea producens 3L]
Length = 754
Score = 129 bits (324), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 65/124 (52%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 397 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 456
V +SSR K LY I+ KM+R++ G H++YD A+RV+V K + CY L +VH
Sbjct: 251 VDISSRPKHLYGIYQKMQRQNKGFHEIYDIAAMRVIVETK---------EECYRALAVVH 301
Query: 457 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 516
L+ PI G F DYI PKP+ YQSLHT V G +G +EVQIRT +MH AE G+AAHW Y
Sbjct: 302 DLFRPIPGRFKDYIGLPKPNRYQSLHTGVIGFNGRPIEVQIRTLEMHHVAEWGIAAHWKY 361
Query: 517 KETG 520
KETG
Sbjct: 362 KETG 365
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 105/194 (54%), Gaps = 14/194 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ +A FA + H GQ RK+G+PY+ H + +L L +S + AG LHDVV+D
Sbjct: 42 IAEAFKFAYQLHQGQSRKSGEPYIAHPVAVADLLRDLGGNS-----TMIAAGFLHDVVED 96
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLGHE--------EL 214
+ IE FG EV LV GV++LS N + R+ N + L +L
Sbjct: 97 TEITPEEIESRFGVEVRNLVEGVTKLSKFNFSSKTERQAENFRRMFLAMAADIRVIVVKL 156
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHNMRT+ L P K +AQET I+ LA+RLG+ K ELEDL F L+ +R+
Sbjct: 157 ADRLHNMRTLEYLKPQKQGQIAQETRDIFAPLANRLGIGCFKWELEDLAFKYLERDAYRE 216
Query: 275 MRADLASMWSPRNR 288
+++ +A S R +
Sbjct: 217 IQSLVAERRSDREQ 230
Score = 41.6 bits (96), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 716 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 775
+ K+ LR +L W++ L+ + N + E V V P+G+++ L G
Sbjct: 376 DEKLTWLRQLLEWQKDLKDAQEYME---------NIKDNLFDEDVYVFTPDGDVVALSRG 426
Query: 776 STAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
+TA D A + VG V VNG+ + + LK+GDIVE+
Sbjct: 427 ATAVDFAYRIHTEVGNHCAGVRVNGEWRVLDCPLKNGDIVEI 468
>gi|156741205|ref|YP_001431334.1| (p)ppGpp synthetase I SpoT/RelA [Roseiflexus castenholzii DSM
13941]
gi|156232533|gb|ABU57316.1| (p)ppGpp synthetase I, SpoT/RelA [Roseiflexus castenholzii DSM
13941]
Length = 771
Score = 129 bits (324), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 98/176 (55%), Gaps = 20/176 (11%)
Query: 352 AKSSEAQKKAKVVQDAGIALTSLVA--CEEALEKELLISTSYIPGMEVTLSSRLKSLYSI 409
AK E ++ + +DA L V + LEKE G++ ++ R K +YSI
Sbjct: 244 AKYQEISRQLALRRDARERLIHRVIQRLRQVLEKE---------GIKADITGRPKHIYSI 294
Query: 410 FSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDY 469
+ KM RK V + ++YD A+RV+V + CY +L +VH W P+ GEFDDY
Sbjct: 295 YRKMERKGVSLDQIYDQLAVRVIVD---------TVADCYRVLGLVHATWPPVPGEFDDY 345
Query: 470 IVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQS 525
I PK S YQSLHT V P G E+QIRT +MHE AE G+AAHW YKE ++ +
Sbjct: 346 IAMPKESMYQSLHTTVLIPGGQPCEIQIRTHEMHEIAERGIAAHWRYKEGFGRIDA 401
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 106/199 (53%), Gaps = 14/199 (7%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
++E V+ A A A AH Q R +G+PY+ H + IL L + +V A +LHD
Sbjct: 70 SEELVRNAYAIACEAHSKQQRDSGEPYIDHPVAVAHILIDLQLDAA-----SVAAALLHD 124
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE------- 212
V++D + + FG E+A LV GV++LS + R ++ +
Sbjct: 125 VLEDTLVTKEQLIALFGAEIANLVDGVTKLSALEARTREEAQVGTYRKMFIAMADDPRVV 184
Query: 213 --ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
+LADRLHNMRTI +L + + +A+ETL I+ LA RLG+W +K ELED FAVL P
Sbjct: 185 LVKLADRLHNMRTISSLSEERQKRMARETLEIYAPLAHRLGIWQIKWELEDRAFAVLNPA 244
Query: 271 IFRKMRADLASMWSPRNRV 289
++++ LA R R+
Sbjct: 245 KYQEISRQLALRRDARERL 263
>gi|212555686|gb|ACJ28140.1| GTP pyrophosphokinase [Shewanella piezotolerans WP3]
Length = 735
Score = 129 bits (324), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 119/403 (29%), Positives = 178/403 (44%), Gaps = 90/403 (22%)
Query: 117 GQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFG 176
GQ +KT P L ILA L ++T+ A IL V D S I+E FG
Sbjct: 45 GQDKKTKTPVLERAREMIEILAPL-----NMDIETLQAAILFVVFDADLISEEEIQERFG 99
Query: 177 DEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVA 236
++ LV+ V ++ I L V+ T E D N+R + RAV
Sbjct: 100 AKLEILVSSVQTMNAIGAL-------KVDNQTRNGEPQID---NIRKMLLAMVEDVRAVV 149
Query: 237 QETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP-RNRVGYSRRI 295
LA R+ L L ++ A + ++ + ++A +++P NR+G +
Sbjct: 150 -------IKLAERICL------LREIKNADEEVKVL--IAREIADVYAPLANRLGIGQL- 193
Query: 296 TTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSS 355
+ +D SF H + KD+ + + R R F+ D
Sbjct: 194 -----------KWELEDISFRYL--HPQTYKDIAKQ-----LDGKRIDRETFIDDFVSQL 235
Query: 356 EAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRR 415
+A+ L+K+ + + Y R K +YSI+ KM
Sbjct: 236 QAR----------------------LDKDQIRAKVY---------GRPKHIYSIWKKMNG 264
Query: 416 KDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKP 475
K + +++D RA+R+V +Q CY L +VH LW I EFDDY+ NPKP
Sbjct: 265 KQLKFDELFDVRAVRIVT---------DRLQDCYGALGVVHTLWHHIPREFDDYVANPKP 315
Query: 476 SGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
+GYQS+HT V GP+G +E+QIRT++MHE AE G+AAHW YKE
Sbjct: 316 NGYQSIHTIVVGPEGKTVEIQIRTEQMHEDAELGVAAHWKYKE 358
>gi|383764936|ref|YP_005443918.1| GTP pyrophosphokinase [Caldilinea aerophila DSM 14535 = NBRC
104270]
gi|381385204|dbj|BAM02021.1| GTP pyrophosphokinase [Caldilinea aerophila DSM 14535 = NBRC
104270]
Length = 825
Score = 129 bits (324), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 84/134 (62%), Gaps = 10/134 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ + R K +YSI+ KM RK VG ++YD RV+V + CY+ L
Sbjct: 331 GIHAEVYGRPKHIYSIYRKMERKGVGFDQIYDVHGFRVIVD---------TVAECYAALG 381
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ-GPDGSALEVQIRTQKMHEYAEHGLAA 512
++H +W PI GEFDDYI NPK + YQSLHTAV+ DG +E+QIRT++MHE AE G+AA
Sbjct: 382 VIHTMWHPIPGEFDDYIANPKNNMYQSLHTAVRIKKDGRPVEIQIRTREMHEKAELGVAA 441
Query: 513 HWLYKETGNKLQSI 526
HW YKE + + +
Sbjct: 442 HWQYKEQAHHSKDV 455
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 131/294 (44%), Gaps = 55/294 (18%)
Query: 42 GKAHGAV--TSAITHVAVTAVAIASGA--CLSTKVDFLWPKLEEQPGTFIVDGVDVTGYP 97
G A G + +AI H AV A +SGA + T LW +E DG GY
Sbjct: 31 GGADGTIFEKTAIAHTAVNGDA-SSGASTAVETTQPLLWQTIERLKPLPTADG---QGYI 86
Query: 98 IFND---------------------------EQVQKAIAFAKRAHHGQFRKTGDPYLTHC 130
F+ E + +A A AH R +G+PY+TH
Sbjct: 87 DFDPAKISPEERRAIESLWQHLPESFKPESRELILRAYVLASYAHRDMRRDSGEPYITHP 146
Query: 131 IHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLS 190
I IL L + + + AG+LHDV +D + + FG +A+LV GV++L
Sbjct: 147 IAVTEILTEL-----RMDPEALAAGLLHDVAEDTEFDIEYLRIHFGQTIARLVDGVTKLK 201
Query: 191 YIN---------------QLLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAV 235
I + LR+ ++ + +LADRLHNMRT+ K R +
Sbjct: 202 KIQAKKSASEASTNNQKAESLRKMMMASIEDLRVLIIKLADRLHNMRTLGGQKEHKRRRI 261
Query: 236 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV 289
A+ETL + +A+RLG+W +K+ELEDL F L P +++++ + S R ++
Sbjct: 262 ARETLDYYAPIANRLGIWRIKSELEDLSFRYLNPTSYKEIKNAIQQKESDRQKL 315
>gi|307246755|ref|ZP_07528823.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|307255739|ref|ZP_07537542.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|307260191|ref|ZP_07541900.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 11 str. 56153]
gi|306852330|gb|EFM84567.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|306861299|gb|EFM93290.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|306865736|gb|EFM97615.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 11 str. 56153]
Length = 568
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 110/194 (56%), Gaps = 15/194 (7%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E V++A A+ AH GQ R +G+PY+TH + I+A + K +
Sbjct: 11 IQGYLPADKIELVKRAFVIARDAHEGQTRSSGEPYITHPVAVASIIAEM-----KLDHEA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLG 210
V+A +LHDV++D + + EFG VA++V GVS+L + R+ ++ N + L
Sbjct: 66 VMAALLHDVIEDTPYTEEQLAAEFGSSVAEIVQGVSKLDKLKFRTRQEAQVENFRKMILA 125
Query: 211 HEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 262
+ LADR HNMRT+ AL P K R +A+ETL I+ LA RLG+ LK ELEDL
Sbjct: 126 MTKDIRVVLIKLADRTHNMRTLSALRPDKRRRIAKETLEIYSPLAHRLGIEHLKNELEDL 185
Query: 263 CFAVLQPQIFRKMR 276
CF + P +R +R
Sbjct: 186 CFQAMHPHRYRVLR 199
Score = 102 bits (254), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 73/125 (58%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K LYS++ KMR++D H + D A RVVVG+ + CY L
Sbjct: 228 GIQGRVYGREKHLYSLYEKMRQRDQHFHSILDIYAFRVVVGN---------VDHCYRALG 278
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+H L+ P + DYI PK +GYQSLHT++ G G +EVQIRT+ M AE G+AAH
Sbjct: 279 QMHALYKPRPYKIRDYIAVPKTNGYQSLHTSMIGHKGVPIEVQIRTEDMDLMAELGVAAH 338
Query: 514 WLYKE 518
W Y E
Sbjct: 339 WRYTE 343
>gi|297614536|gb|ADI48567.1| putative (p)ppGpp synthetase II [uncultured bacterium fss6]
Length = 673
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 92/147 (62%), Gaps = 18/147 (12%)
Query: 374 LVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVV 433
L A ++AL+ E G++ T+ R K +YSI+ KM++K + ++YD RA+R++
Sbjct: 172 LQALQQALDDE---------GVQATVYGRPKHIYSIWRKMQKKHLNFDQLYDIRAVRIIT 222
Query: 434 GDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSAL 493
+++ CY+ L +VH LW I EFDDYI PK +GYQS+HT V GP +
Sbjct: 223 D---------SLKDCYAALGVVHSLWRHIASEFDDYIATPKANGYQSIHTVVLGPQDKHV 273
Query: 494 EVQIRTQKMHEYAEHGLAAHWLYKETG 520
E+QIRTQ MH+ AE G+AAHW+YKE G
Sbjct: 274 EIQIRTQAMHDDAELGVAAHWMYKEGG 300
Score = 43.9 bits (102), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%)
Query: 213 ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 272
+LA+R+ +R + L A+E I+ LA+RLG+ LK ELEDL F L P +
Sbjct: 91 KLAERICFLREVKTLDEETRVLAAKECNEIYAPLANRLGIGQLKWELEDLAFRYLHPTTY 150
Query: 273 RKMRADL 279
+ + A L
Sbjct: 151 KTIAAQL 157
>gi|126700359|ref|YP_001089256.1| GTP pyrophosphokinase (RelA/SpoT) [Clostridium difficile 630]
gi|254976339|ref|ZP_05272811.1| putative GTP pyrophosphokinase [Clostridium difficile QCD-66c26]
gi|255093724|ref|ZP_05323202.1| putative GTP pyrophosphokinase [Clostridium difficile CIP 107932]
gi|255101915|ref|ZP_05330892.1| putative GTP pyrophosphokinase [Clostridium difficile QCD-63q42]
gi|255307784|ref|ZP_05351955.1| putative GTP pyrophosphokinase [Clostridium difficile ATCC 43255]
gi|255315476|ref|ZP_05357059.1| putative GTP pyrophosphokinase [Clostridium difficile QCD-76w55]
gi|255518139|ref|ZP_05385815.1| putative GTP pyrophosphokinase [Clostridium difficile QCD-97b34]
gi|255651255|ref|ZP_05398157.1| putative GTP pyrophosphokinase [Clostridium difficile QCD-37x79]
gi|260684319|ref|YP_003215604.1| GTP pyrophosphokinase [Clostridium difficile CD196]
gi|260687978|ref|YP_003219112.1| GTP pyrophosphokinase [Clostridium difficile R20291]
gi|296452442|ref|ZP_06894143.1| GTP diphosphokinase [Clostridium difficile NAP08]
gi|296877791|ref|ZP_06901817.1| GTP diphosphokinase [Clostridium difficile NAP07]
gi|306521098|ref|ZP_07407445.1| putative GTP pyrophosphokinase [Clostridium difficile QCD-32g58]
gi|384361963|ref|YP_006199815.1| GTP pyrophosphokinase [Clostridium difficile BI1]
gi|423081063|ref|ZP_17069675.1| GTP diphosphokinase [Clostridium difficile 002-P50-2011]
gi|423085064|ref|ZP_17073522.1| GTP diphosphokinase [Clostridium difficile 050-P50-2011]
gi|423089842|ref|ZP_17078191.1| GTP diphosphokinase [Clostridium difficile 70-100-2010]
gi|115251796|emb|CAJ69631.1| GTP pyrophosphokinase (RelA/SpoT) [Clostridium difficile 630]
gi|260210482|emb|CBA64959.1| putative GTP pyrophosphokinase [Clostridium difficile CD196]
gi|260213995|emb|CBE06110.1| putative GTP pyrophosphokinase [Clostridium difficile R20291]
gi|296258772|gb|EFH05666.1| GTP diphosphokinase [Clostridium difficile NAP08]
gi|296431242|gb|EFH17063.1| GTP diphosphokinase [Clostridium difficile NAP07]
gi|357550919|gb|EHJ32724.1| GTP diphosphokinase [Clostridium difficile 050-P50-2011]
gi|357551372|gb|EHJ33162.1| GTP diphosphokinase [Clostridium difficile 002-P50-2011]
gi|357557606|gb|EHJ39140.1| GTP diphosphokinase [Clostridium difficile 70-100-2010]
Length = 735
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 118/209 (56%), Gaps = 15/209 (7%)
Query: 87 IVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGK 146
I++ + V P N E V+KA AK+AH GQ+RK+G+PY H + IL + +
Sbjct: 9 IIEKIKVYA-PNANFEMVEKAYNLAKKAHEGQYRKSGEPYFIHPLAVANILIEM-----E 62
Query: 147 RAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVN 205
++T+ AG+LHDVV+D + I++EFG EVA LV GV++L I + + N+
Sbjct: 63 LDIETITAGLLHDVVEDTEYTYEDIKKEFGKEVADLVDGVTKLGQIKYRSKEETQSENLR 122
Query: 206 QGTLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKA 257
+ L + LADRLHNMRT+ +PP KA+ A+ETL I+ +A RLG+ +K
Sbjct: 123 KMFLAMAKDIRVILIKLADRLHNMRTLKYMPPEKAKYKAKETLEIYGGIAHRLGISKIKW 182
Query: 258 ELEDLCFAVLQPQIFRKMRADLASMWSPR 286
ELED + P+ + + + ++ S R
Sbjct: 183 ELEDRALRFMDPEGYYDLVSRVSMKRSQR 211
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 78/117 (66%), Gaps = 9/117 (7%)
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K YSI+ KM++K +++D A+R++V + ++ CY++L IVH LW P
Sbjct: 238 RPKHFYSIYRKMQKKHKTFEEIFDLTAVRILVDN---------VKDCYAVLGIVHTLWRP 288
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
I G F DYI PKP+ YQSLHT V GPDG LE+QIRT +MH AE+G+AAHW YKE
Sbjct: 289 IPGRFKDYIAMPKPNMYQSLHTTVVGPDGEPLEIQIRTHEMHNIAENGIAAHWKYKE 345
Score = 39.3 bits (90), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 13/109 (11%)
Query: 709 TSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGE 768
+S E+ + K++ LR M+ WE+ L+ + N V V P G+
Sbjct: 348 SSKESKVEEKLQWLRQMMEWEKDLKDPQEFMDALKEDVFNSQ---------VYVFTPKGD 398
Query: 769 IMRLRSGSTAADAAMKV--GLEGKLV--LVNGQLVLPNTELKDGDIVEV 813
++ L + ST D A +V + K V ++G++V + +L++G+IVEV
Sbjct: 399 VIELPAESTPIDFAYRVHTNVGNKCVGAKIDGRIVPIDYKLQNGNIVEV 447
>gi|261381004|ref|ZP_05985577.1| GTP diphosphokinase [Neisseria subflava NJ9703]
gi|284796037|gb|EFC51384.1| GTP diphosphokinase [Neisseria subflava NJ9703]
Length = 737
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 60/122 (49%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V I CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLTFDGLFDIRAVRILVD---------TIPECYTTLGIVHSL 308
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 519 TG 520
G
Sbjct: 369 GG 370
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 90/206 (43%), Gaps = 31/206 (15%)
Query: 93 VTGYPIFNDEQVQKAIAFAKRAHHGQFRKT-GDPYLTHCIHTGRILAML--IPSSGKRAV 149
V P + +Q A AK + T G+P + H + + +I++ L +P
Sbjct: 26 VAALPDSDKNLIQTAFDLAKEHYPADALTTYGEPLMEHFLGSMQIVSELDLLP------- 78
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D V A IL D+ + E V +LV GV + + Q R + +
Sbjct: 79 DAVAATILSDIGKYVPTWQELVTERCNSTVCELVKGVDEVQKLTQFARVDSLATPEERSQ 138
Query: 210 GHE------------------ELADRLHNMRTIYALP--PAKARAVAQETLLIWCSLASR 249
E +LA R ++ + +P P K RAVA+ETL I+ LA+R
Sbjct: 139 QAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNVPDNPEK-RAVAKETLDIFAPLANR 197
Query: 250 LGLWALKAELEDLCFAVLQPQIFRKM 275
LG+W LK +LEDL F +P+ +R++
Sbjct: 198 LGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|339058187|ref|ZP_08648709.1| GTP pyrophosphokinase2C (p)ppGpp synthetase I [gamma
proteobacterium IMCC2047]
gi|330720606|gb|EGG98868.1| GTP pyrophosphokinase2C (p)ppGpp synthetase I [gamma
proteobacterium IMCC2047]
Length = 748
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 84/131 (64%), Gaps = 9/131 (6%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
++ ++ R K +YSI KM K + +VYDA A+RV+V P ++ CY+ L +
Sbjct: 259 IDAVVTGRAKHIYSIARKMDNKHIDFDQVYDASAVRVLV---------PDVKDCYATLGV 309
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW + EFDDYI PKP+GY+SLHTAV GP+G A+EVQIRT MHE AE G+ +HW
Sbjct: 310 VHSLWRLVPNEFDDYIAIPKPNGYRSLHTAVIGPEGKAMEVQIRTHAMHEEAEFGVCSHW 369
Query: 515 LYKETGNKLQS 525
YK K +S
Sbjct: 370 QYKGADRKGKS 380
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 109/237 (45%), Gaps = 28/237 (11%)
Query: 124 DPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLV 183
+ ++ +C G +A ++ + K D++VAGIL V + SL ++ +FG+ VA L+
Sbjct: 61 EKHIGNCFFAGLEIAEIL-AGLKLDSDSLVAGILCRAVREERLSLKTVAAKFGETVANLI 119
Query: 184 AGVSRLSYIN-----------------QLLRRHRRINVNQGTLGHEELADRLHNMRTIYA 226
GV ++ I + +R+ V+ + +LA+R +R I
Sbjct: 120 DGVQQMDAITAAQESLDKTSLGGQDQVENVRKMLVSMVDDVRVALIKLAERTWAIRAIKN 179
Query: 227 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 286
P R +A++ I+ LA RLG+ +K ELED+ F L P+ + A +A + R
Sbjct: 180 EPDDFKRRIAKQVSEIYAPLAHRLGIGYIKWELEDIAFRYLSPERY----AAIAKLLDGR 235
Query: 287 --NRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSD 340
+R Y R+ ++ DE+ D T +H+ S+ + + + FD + D
Sbjct: 236 RLDREEYISRVINLLEGKLRDEQI---DAVVTGRAKHIYSIARKMDNKHIDFDQVYD 289
>gi|328954063|ref|YP_004371397.1| (p)ppGpp synthetase I SpoT/RelA [Desulfobacca acetoxidans DSM
11109]
gi|328454387|gb|AEB10216.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfobacca acetoxidans DSM
11109]
Length = 717
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 123/207 (59%), Gaps = 16/207 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+QKA F+ R+H GQ R +G PYL+H + +LA + G V +V G+LHD V+D
Sbjct: 26 IQKAYIFSARSHEGQTRLSGQPYLSHPLEVAYLLAQM----GLDPV-SVACGLLHDTVED 80
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYIN---QLLRRHRRINVNQGTLGHE------EL 214
SL ++E FG+EV ++ GV+++S I+ ++ ++ I + H+ +L
Sbjct: 81 TNTSLDDLDEIFGEEVTDIINGVTKISQISFDKKIDQQAEYIRKMILAMAHDIRVILVKL 140
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADR+HNMRT+ + P + ++QETL I+ LA RLG+ +KAELEDL F L+P+I+++
Sbjct: 141 ADRVHNMRTLGYMKPESQKRISQETLDIFAPLAGRLGMGRIKAELEDLAFYYLEPEIYQQ 200
Query: 275 MRADLASMWSPRNRVGYSRRITTIVSS 301
++ LA R + Y + I+ I++
Sbjct: 201 IQDGLARKRGEREQ--YIKEISEIINQ 225
Score = 109 bits (272), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 70/120 (58%), Gaps = 9/120 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+ R K LY I+ KM + + + +VYD A R+V+ + CY L ++H L
Sbjct: 236 VKGRPKHLYGIYRKMIAQQISLDQVYDLIAFRIVL---------KTLSECYETLGLIHSL 286
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W P+ F DYI PK + YQSLHT V GP G +E+QIRT+ M+ AE G+AAHW YKE
Sbjct: 287 WRPVPNRFKDYIAMPKANKYQSLHTTVIGPYGERMEIQIRTEGMNRIAEEGIAAHWAYKE 346
>gi|149183963|ref|ZP_01862340.1| GTP pyrophosphokinase [Bacillus sp. SG-1]
gi|148848326|gb|EDL62599.1| GTP pyrophosphokinase [Bacillus sp. SG-1]
Length = 507
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 83/127 (65%), Gaps = 9/127 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+E +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L I
Sbjct: 11 IEADISGRPKHIYSIYRKMALQNKQFNEIYDLLAVRIVVD---------SIKDCYAVLGI 61
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH+ AE+G+AAHW
Sbjct: 62 IHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTTEMHQIAEYGVAAHW 121
Query: 515 LYKETGN 521
YKE N
Sbjct: 122 AYKEGQN 128
>gi|354808370|ref|ZP_09041791.1| (p)ppGpp synthase/hydrolase RelA [Lactobacillus curvatus CRL 705]
gi|354513152|gb|EHE85178.1| (p)ppGpp synthase/hydrolase RelA [Lactobacillus curvatus CRL 705]
Length = 743
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 77/181 (42%), Positives = 104/181 (57%), Gaps = 14/181 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
VQKA FA H Q R++G+PY+ H I ILA L K TV +G LHDVV+D
Sbjct: 28 VQKAYDFAAYVHKEQVRQSGEPYIIHPIQVAGILAEL-----KMDPATVASGYLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRL------SYINQLLRRHRRINVNQGT---LGHEEL 214
+LG +EE FG +VA +V GV++L S+ QL HR++ + + +L
Sbjct: 83 TNITLGDVEEMFGKDVAVIVDGVTKLGKIKYKSHQEQLAENHRKMLLAMAKDLRVIMVKL 142
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHNMRT+ L P K R +A ETL I+ LA RLG+ +K ELED+ L PQ + +
Sbjct: 143 ADRLHNMRTLKHLKPEKQRRIANETLEIYAPLADRLGISKIKWELEDISLRYLNPQQYYR 202
Query: 275 M 275
+
Sbjct: 203 I 203
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 78/124 (62%), Gaps = 9/124 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
M + R K LYSI+ KMR + ++YD A+RVVV +I+ CY++L
Sbjct: 234 MNYDIYGRPKHLYSIYRKMRDQHKQFEELYDLLAIRVVVD---------SIKDCYAVLGA 284
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRTQ+MH+ AE+G+AAHW
Sbjct: 285 IHTKWKPMPGRFKDYIAMPKANMYQSIHTTVIGPKGKPLEVQIRTQEMHDVAEYGVAAHW 344
Query: 515 LYKE 518
YKE
Sbjct: 345 AYKE 348
>gi|292900404|ref|YP_003539773.1| GTP pyrophosphokinase [Erwinia amylovora ATCC 49946]
gi|428784152|ref|ZP_19001644.1| GTP pyrophosphokinase [Erwinia amylovora ACW56400]
gi|291200252|emb|CBJ47380.1| GTP pyrophosphokinase [Erwinia amylovora ATCC 49946]
gi|312171322|emb|CBX79581.1| GTP pyrophosphokinase [Erwinia amylovora ATCC BAA-2158]
gi|426277291|gb|EKV55017.1| GTP pyrophosphokinase [Erwinia amylovora ACW56400]
Length = 744
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 84/127 (66%), Gaps = 9/127 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K +YSI+ KM++K + +++D RA+R+V +Q CY L
Sbjct: 244 GVKAEVYGRPKHIYSIWRKMQKKSLAFDELFDVRAIRIV---------AERLQDCYGALG 294
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH L+ + EFDDY+ NPKP+GYQS+HT V GP G +E+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTLYRHLPNEFDDYVANPKPNGYQSIHTVVLGPQGKTVEIQIRTRQMHEDAELGVAAH 354
Query: 514 WLYKETG 520
W YKE G
Sbjct: 355 WKYKEGG 361
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 15/141 (10%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI------- 202
+T+ A +L + + S +E++FG + LV GV + I QL H
Sbjct: 74 ETLSAALLFPLANAGVVSEHVLEQQFGKAIVSLVHGVRDMDAIRQLKATHNDSMASEQVD 133
Query: 203 NVNQGTLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 254
NV + L E LA+R+ ++R + P + A+E I+ LA+RLG+
Sbjct: 134 NVRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQ 193
Query: 255 LKAELEDLCFAVLQPQIFRKM 275
LK ELED CF L P ++++
Sbjct: 194 LKWELEDFCFRYLHPDEYKRI 214
>gi|241759907|ref|ZP_04758007.1| GTP pyrophosphokinase [Neisseria flavescens SK114]
gi|241319915|gb|EER56311.1| GTP pyrophosphokinase [Neisseria flavescens SK114]
Length = 737
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 60/122 (49%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V I CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLTFDGLFDIRAVRILVD---------TIPECYTTLGIVHSL 308
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 519 TG 520
G
Sbjct: 369 GG 370
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 91/206 (44%), Gaps = 31/206 (15%)
Query: 93 VTGYPIFNDEQVQKAIAFAKRAHHGQFRKT-GDPYLTHCIHTGRILAML--IPSSGKRAV 149
V P + +Q A AK + T G+P L H + + +I++ L +P
Sbjct: 26 VAALPDSDKNLIQTAFDLAKEHYPADALTTYGEPLLEHFLGSMQIVSELDLLP------- 78
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL-------------- 195
D V A IL D+ + E V +LV GV + + Q
Sbjct: 79 DAVAATILSDIGKYVPTWHELVTERCNSTVCELVKGVDEVQKLTQFARVDSLATPEERGQ 138
Query: 196 ----LRRHRRINVNQGTLGHEELADRLHNMRTIYALP--PAKARAVAQETLLIWCSLASR 249
+R+ V + +LA R ++ + +P P K RAVA+ETL I+ LA+R
Sbjct: 139 QAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNVPDNPEK-RAVAKETLDIFAPLANR 197
Query: 250 LGLWALKAELEDLCFAVLQPQIFRKM 275
LG+W LK +LEDL F +P+ +R++
Sbjct: 198 LGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|258405012|ref|YP_003197754.1| (p)ppGpp synthetase I SpoT/RelA [Desulfohalobium retbaense DSM
5692]
gi|257797239|gb|ACV68176.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfohalobium retbaense DSM
5692]
Length = 733
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 60/136 (44%), Positives = 89/136 (65%), Gaps = 12/136 (8%)
Query: 386 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 445
++ + IPG +S R K LYSIF KM+R+ + + +V+D A RV++ ++
Sbjct: 223 ILDENSIPG---RVSGRQKHLYSIFHKMQRQGLSLDQVHDLVAFRVILK---------SV 270
Query: 446 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 505
+ CY++L ++H +W P+ G F DYI PK + YQSLHT V GPDG +E+QIRT++MHE
Sbjct: 271 RDCYAVLGLIHSIWKPVPGRFKDYISMPKANMYQSLHTTVIGPDGERIEIQIRTEEMHEI 330
Query: 506 AEHGLAAHWLYKETGN 521
E+G+AAHW YK+ N
Sbjct: 331 NEYGIAAHWKYKDGSN 346
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 124/214 (57%), Gaps = 17/214 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+QKA F+ AH GQ R +G+PYL+H + ILA L + T+ AG+LHD ++D
Sbjct: 23 IQKAYVFSASAHAGQRRLSGEPYLSHPLEVAHILAEL-----RLDAPTIAAGLLHDTLED 77
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLGHEE--------L 214
++ +EE+FG+EVA++V GV+++ + + + N+ + L E L
Sbjct: 78 TQSNVSDLEEQFGEEVAQIVEGVTKIGKVRFTSKEEAQAENIRKMILAMAEDIRVIIVKL 137
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHNMRT+ K R ++QET+ I+ LA+RLGL+ +K +LED+ F L+P ++ +
Sbjct: 138 ADRLHNMRTLQHQKGIKQRLISQETMEIYAPLANRLGLYRVKVQLEDISFQYLRPDVYYQ 197
Query: 275 MRADLASMWSPRNRVGYSRRITTIVSSPPLDERT 308
+++ + + + Y R+T ++ S LDE +
Sbjct: 198 IKSGVEQHQTLGQQ--YIERVTGLIQS-ILDENS 228
>gi|260771910|ref|ZP_05880828.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio metschnikovii
CIP 69.14]
gi|260613202|gb|EEX38403.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio metschnikovii
CIP 69.14]
Length = 739
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 89/127 (70%), Gaps = 9/127 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+S R K +YSI+ KM++K++ +++D RA+R++ DK +Q CY+ L IVH
Sbjct: 248 VSGRPKHIYSIWRKMQKKNLAFDELFDVRAVRII-ADK--------LQDCYAALGIVHTK 298
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
+ + GEFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAHW YKE
Sbjct: 299 YKHLPGEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAHWKYKE 358
Query: 519 TGNKLQS 525
+ +S
Sbjct: 359 GASTARS 365
Score = 62.8 bits (151), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 15/146 (10%)
Query: 151 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL--------------- 195
T+VA +L + +EE +G E+ KL+ GV ++ I QL
Sbjct: 74 TLVAALLFPIATSGLLDQEELEEHYGKEIIKLIHGVEEMAAIGQLNITMQGSEASAQVDN 133
Query: 196 LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 255
+RR V+ +LA+R+ N+R + P RA A+E I+ LA+RLG+ L
Sbjct: 134 VRRMLLAMVDDFRCVVIKLAERICNLREVKDQPDEVRRAAAKECANIYAPLANRLGIGQL 193
Query: 256 KAELEDLCFAVLQPQIFRKMRADLAS 281
K E+ED F QP ++++ L+
Sbjct: 194 KWEIEDYAFRYQQPDTYKQIAKQLSE 219
>gi|389795564|ref|ZP_10198684.1| RelA/SpoT family (p)ppGpp synthetase [Rhodanobacter fulvus Jip2]
gi|388430596|gb|EIL87745.1| RelA/SpoT family (p)ppGpp synthetase [Rhodanobacter fulvus Jip2]
Length = 714
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 92/157 (58%), Gaps = 16/157 (10%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ L+ R K +YSI+ KM+RK + +YD RA+RV+V ++ CY+ L
Sbjct: 224 GIHAELAGRPKHIYSIWKKMQRKALEFSDLYDIRAVRVLVD---------SVSDCYAALG 274
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH W + GEFDDYI PK +GYQSLHTAV GP G LEVQIRT MH E G+AAH
Sbjct: 275 VVHARWPHLPGEFDDYIARPKGNGYQSLHTAVLGPAGKTLEVQIRTHAMHRANELGVAAH 334
Query: 514 WLYKETGN-------KLQSISSMDESDIEASSSLSKD 543
W YKE G+ K+ + + E+ E S L+ D
Sbjct: 335 WRYKEGGSADAEFEAKIAWMRKLLEARGEDDSKLAAD 371
Score = 44.3 bits (103), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 39/62 (62%)
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LA +L MR A P +A A+A+ T I LA+RLG+W LK ELEDL F LQP +R
Sbjct: 133 LARQLARMRAAVAWPAEEAAALARLTRDIHAPLANRLGIWQLKWELEDLAFRYLQPDTYR 192
Query: 274 KM 275
++
Sbjct: 193 RI 194
>gi|301064997|ref|ZP_07205342.1| GTP diphosphokinase [delta proteobacterium NaphS2]
gi|300440846|gb|EFK05266.1| GTP diphosphokinase [delta proteobacterium NaphS2]
Length = 716
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 111/191 (58%), Gaps = 14/191 (7%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + E ++KA ++ + H GQ R +G+PYL+H + IL L K V + AG
Sbjct: 15 HPKADIELIEKAYVYSAKVHQGQIRLSGEPYLSHPLEAAYILTQL-----KMDVVCIAAG 69
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLGHE-- 212
+LHDVV+D SL I FG+E A +V GV+++S I+ + R+ NV + L
Sbjct: 70 LLHDVVEDTHASLEEISGLFGEETANIVDGVTKISKIHFKSSKQRQAENVRKMILAMSTD 129
Query: 213 ------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAV 266
+LADRLHNMRT+ P K R++A ETL I+ LA R+G+ +K+ LEDLC
Sbjct: 130 IRVILVKLADRLHNMRTLGFQPEKKQRSIATETLDIYAPLAGRMGIHWIKSNLEDLCLFY 189
Query: 267 LQPQIFRKMRA 277
L+P+I+ +++
Sbjct: 190 LEPKIYASIKS 200
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 72/121 (59%), Gaps = 9/121 (7%)
Query: 398 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 457
T+ R K YSI+ KM +D+ + +V+D A RV+V +I+ CY L +H
Sbjct: 232 TIKGRQKHFYSIYKKMIAQDLEVGQVFDILAFRVIVS---------SIKECYEALGHIHS 282
Query: 458 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 517
+W P+ F DYI PK + YQSLHT V GP +EVQIRT +MH AE G+AAHW YK
Sbjct: 283 IWKPVSKRFKDYISVPKANMYQSLHTTVFGPMKERMEVQIRTWEMHHVAESGIAAHWKYK 342
Query: 518 E 518
E
Sbjct: 343 E 343
>gi|386347702|ref|YP_006045951.1| (p)ppGpp synthetase I SpoT/RelA [Spirochaeta thermophila DSM 6578]
gi|339412669|gb|AEJ62234.1| (p)ppGpp synthetase I, SpoT/RelA [Spirochaeta thermophila DSM 6578]
Length = 662
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 113/189 (59%), Gaps = 23/189 (12%)
Query: 99 FNDEQ---VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ DE+ VQ+A +A + H GQ R +G+PY++H + RILA L +G T++A
Sbjct: 18 YTDEEKARVQEAARWAAQLHEGQLRASGEPYISHPLEVARILADLGMDTG-----TLIAA 72
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI----NVNQGTLGH 211
+LHD ++D + I FG+EVA LV GV+++S L R+R+I ++ + L
Sbjct: 73 LLHDTIEDTGATRDEIASRFGEEVALLVEGVTKIS---SLRARNRKIQAAESIRKMLLAM 129
Query: 212 EE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLC 263
+ LAD+LHNMRT+ LPPAK +A+A E L I+ LA RLG+ +LK ELEDL
Sbjct: 130 AKDIRVILIKLADKLHNMRTLQYLPPAKQKAIATECLEIYAPLAERLGMSSLKDELEDLA 189
Query: 264 FAVLQPQIF 272
LQP+++
Sbjct: 190 LKHLQPEVY 198
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++V + R K LYSI+ KM+RK + ++YD +R++ + CY+LL
Sbjct: 231 GIKVEIQMRRKHLYSIYQKMKRKARPLEEIYDVLGIRLLCNTETE---------CYTLLG 281
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVHRL+ P++G F DYI PK + YQSLHT V P G+ +EVQIRT +MH AE+G+AAH
Sbjct: 282 IVHRLYKPLEGRFKDYIAMPKANRYQSLHTTVMVPGGTLVEVQIRTHQMHRTAEYGIAAH 341
Query: 514 WLYKE 518
WLYKE
Sbjct: 342 WLYKE 346
>gi|307155133|ref|YP_003890517.1| (p)ppGpp synthetase I SpoT/RelA [Cyanothece sp. PCC 7822]
gi|306985361|gb|ADN17242.1| (p)ppGpp synthetase I, SpoT/RelA [Cyanothece sp. PCC 7822]
Length = 750
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 113/205 (55%), Gaps = 19/205 (9%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A FA H GQ+RK+G+PY+ H I +L L S + AG LHDVV+D
Sbjct: 45 RAFNFAYELHKGQYRKSGEPYIAHPIAVAGLLRDLGGDS-----TMIAAGFLHDVVEDTE 99
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLGHEE--------LAD 216
+L IE+ FGDEV +LV GV++LS N + R+ N + L + LAD
Sbjct: 100 VTLEDIEQRFGDEVRQLVEGVTKLSKFNFSSKTERQAENFRRMFLAMAKDIRVIVVKLAD 159
Query: 217 RLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 276
RLHNMRT+ L K R++A ET I+ LA+RLG+ K ELEDLCF L+P+ +R+++
Sbjct: 160 RLHNMRTLEHLATEKQRSIALETREIFAPLANRLGIGRFKWELEDLCFKYLEPEAYREIQ 219
Query: 277 ADLASMWSPRNRVGYSRRITTIVSS 301
A +A R+ RI I +
Sbjct: 220 ALVAE-----KRIDRETRIEQITET 239
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/133 (47%), Positives = 82/133 (61%), Gaps = 9/133 (6%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+ R K LY I+ KM+R+ H++YD ALR++V K+ CY L IVH +
Sbjct: 254 IQGRPKHLYGIYHKMQRQRKEFHEIYDIAALRIIVETKDE---------CYRALAIVHDV 304
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
+ PI G F DYI PK + YQSLHT V G G LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 305 FKPIPGRFKDYIGLPKSNRYQSLHTTVVGFTGRPLEVQIRTLEMHHIAEYGIAAHWKYKE 364
Query: 519 TGNKLQSISSMDE 531
+G +++S DE
Sbjct: 365 SGGSNYNLTSEDE 377
>gi|344343209|ref|ZP_08774078.1| (p)ppGpp synthetase I, SpoT/RelA [Marichromatium purpuratum 984]
gi|343805140|gb|EGV23037.1| (p)ppGpp synthetase I, SpoT/RelA [Marichromatium purpuratum 984]
Length = 738
Score = 129 bits (323), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 83/125 (66%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ ++ R K +YSI+ KMRRK V I +++D RA+R++V ++ CY+ L
Sbjct: 249 GISAEITGRPKHIYSIWKKMRRKGVDIEEIFDLRAVRIMV---------ESVADCYAALG 299
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI PK + YQSLHTAV GP +LEVQIRT +MH +AE G+AAH
Sbjct: 300 IVHGLWRHIPKEFDDYIATPKGNMYQSLHTAVIGPGDKSLEVQIRTYEMHRHAEFGVAAH 359
Query: 514 WLYKE 518
W YKE
Sbjct: 360 WAYKE 364
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 101/201 (50%), Gaps = 20/201 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E + A A R H Q +TG+ + H + T ILA L +T+VA +L+ +
Sbjct: 36 EAIAGACAMLTRIHGDQRIETGETRVRHLLSTADILAGLEMDD-----ETLVAALLNGSL 90
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSR---LSYINQLL----RRHRRINVNQGTLGHEE- 213
+ SL IE+ FG VA++V +SR L+ ++ ++ + N+ + LG E
Sbjct: 91 EAQATSLADIEQRFGANVARMVDDLSRIGQLANVDAIIAAKDQSQHEENLRRLLLGIAED 150
Query: 214 -------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAV 266
LA+R+H MR I L + +A++T ++ LA+RLG+W LK ELEDL
Sbjct: 151 VRVVLVVLAERVHLMRAIKDLEIRRRTRIARDTERVYAPLANRLGVWQLKWELEDLSLRY 210
Query: 267 LQPQIFRKMRADLASMWSPRN 287
LQP+ ++++ LA R
Sbjct: 211 LQPEEYKRIARLLAERREERE 231
>gi|340357216|ref|ZP_08679839.1| GTP diphosphokinase [Sporosarcina newyorkensis 2681]
gi|339618078|gb|EGQ22679.1| GTP diphosphokinase [Sporosarcina newyorkensis 2681]
Length = 732
Score = 129 bits (323), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 83/203 (40%), Positives = 112/203 (55%), Gaps = 24/203 (11%)
Query: 92 DVTGYPIF-------NDEQV---QKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLI 141
D+T IF N+E V +KA AK AH GQFR +G+PY+ H I ILA L
Sbjct: 6 DMTEQDIFELVAKYMNEEHVDFIKKAFVVAKAAHEGQFRSSGEPYINHPIQVAGILAEL- 64
Query: 142 PSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QL 195
+ +TV AG LHDVV+D S I EFGDEVA LV GV++L + +
Sbjct: 65 ----QMDPETVAAGFLHDVVEDTEVSREDIIREFGDEVAMLVDGVTKLDKLKFKSNEEKQ 120
Query: 196 LRRHRRINVNQGT---LGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 252
HR++ + + +LADRLHNMRT+ +P AK R V++ETL I+ LA RLG+
Sbjct: 121 AENHRKMFIAMAQDIRVILIKLADRLHNMRTLKHVPAAKQRRVSEETLEIFSPLAHRLGI 180
Query: 253 WALKAELEDLCFAVLQPQIFRKM 275
+K ELED+ PQ + ++
Sbjct: 181 STIKWELEDIALRYSNPQQYYRI 203
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 84/137 (61%), Gaps = 9/137 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ + R K LYSI+ KM + +++YD A+R+VV +I+ CY+ L
Sbjct: 233 GIASEMHGRPKHLYSIYQKMVIQKKEFNEIYDLLAVRIVV---------KSIKDCYAALG 283
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
I+H LW P+ G F DYI PK + YQSLHT V GP G LEVQIRT++MH +E G+AAH
Sbjct: 284 IIHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPAGDPLEVQIRTEEMHRISEFGVAAH 343
Query: 514 WLYKETGNKLQSISSMD 530
W YKE + +S + +D
Sbjct: 344 WAYKEGKSVAKSSNDID 360
>gi|197284126|ref|YP_002149998.1| GDP/GTP pyrophosphokinase [Proteus mirabilis HI4320]
gi|227358008|ref|ZP_03842350.1| GTP pyrophosphokinase [Proteus mirabilis ATCC 29906]
gi|425067012|ref|ZP_18470128.1| GTP pyrophosphokinase [Proteus mirabilis WGLW6]
gi|425073550|ref|ZP_18476656.1| GTP pyrophosphokinase [Proteus mirabilis WGLW4]
gi|194681613|emb|CAR40620.1| GTP pyrophosphokinase [Proteus mirabilis HI4320]
gi|227161743|gb|EEI46775.1| GTP pyrophosphokinase [Proteus mirabilis ATCC 29906]
gi|404595235|gb|EKA95786.1| GTP pyrophosphokinase [Proteus mirabilis WGLW4]
gi|404601683|gb|EKB02075.1| GTP pyrophosphokinase [Proteus mirabilis WGLW6]
Length = 746
Score = 129 bits (323), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 86/125 (68%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
+EV + R K +YSI+ KM++K++ +++D RA+R+VV +Q CY+ L
Sbjct: 244 NIEVDIYGRPKHIYSIWRKMKKKNLAFDELFDVRAVRIVV---------ERLQDCYAALG 294
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH + + EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHFRHLPDEFDDYVANPKPNGYQSIHTVVLGPEGKTVEIQIRTRQMHEDAELGVAAH 354
Query: 514 WLYKE 518
W YKE
Sbjct: 355 WKYKE 359
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 20/167 (11%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRR-------I 202
D++ A +L + ++ + I E FG+ + LV GV + I QL H
Sbjct: 74 DSMRAALLFPLAEEDLINQEVITEHFGEAIWNLVRGVMEMDAIRQLKATHTNETSSVQVD 133
Query: 203 NVNQGTLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 254
NV + L E LA+R+ ++R + + A+E I+ LA+RLG+
Sbjct: 134 NVRRMLLSMVEDFRCVVIKLAERIAHLREVKDATEDERVLAAKECFNIYAPLANRLGIGQ 193
Query: 255 LKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSS 301
LK ELED CF L P +++ +A++ R R+ + I VS+
Sbjct: 194 LKWELEDFCFRYLHPDEYKQ----IANLLHER-RIDREQYIDNFVST 235
>gi|428219731|ref|YP_007104196.1| (p)ppGpp synthetase I SpoT/RelA [Pseudanabaena sp. PCC 7367]
gi|427991513|gb|AFY71768.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudanabaena sp. PCC 7367]
Length = 746
Score = 129 bits (323), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 104/187 (55%), Gaps = 18/187 (9%)
Query: 378 EEALEKELLISTSYIPGMEVT---LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVG 434
EE L + I S I + +T +S R K LY I+ KM+ + ++YD A+R++V
Sbjct: 231 EERLARVRDILRSRIEQLGLTNFEISGRPKHLYGIYQKMQVRQKKYEEIYDVSAIRIIVE 290
Query: 435 DKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALE 494
+K + CY +L +VH + PI G F DYI PKP+ YQSLHT V GP+G LE
Sbjct: 291 NK---------EACYRVLAVVHDCFRPIPGRFKDYIGLPKPNRYQSLHTVVIGPNGRPLE 341
Query: 495 VQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESD------IEASSSLSKDTDDHN 548
VQIRT +MH AE+G+AAHW YKET + Q+ S DE +E L D + +
Sbjct: 342 VQIRTWEMHHIAEYGIAAHWKYKETNSSHQATSQEDEKFTWLRQLVEWQRELKDDQEYID 401
Query: 549 PLDTDLF 555
L +LF
Sbjct: 402 TLKENLF 408
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 115/205 (56%), Gaps = 15/205 (7%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A+ FA H GQ+R +G+PY+ H I IL L G +A+ +VAG LHDVV+D
Sbjct: 45 RALKFACELHEGQYRASGEPYILHPIEVATILRDL--GGGSKAM--IVAGFLHDVVEDTE 100
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLGHEE--------LAD 216
++ IE EFG E+A LV GV++LS N + R N + L + LAD
Sbjct: 101 VTVADIEAEFGAEIAALVEGVTKLSKFNFESKTERAAENFRRMFLAMAQDIRVIVVKLAD 160
Query: 217 RLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 276
RLHNMRT+ LP K +A+ET+ I+ LA+RLG+ +K ELEDL F + +++MR
Sbjct: 161 RLHNMRTLEHLPAPKQANIARETMEIFAPLANRLGIGQIKWELEDLSFKYIDKDAYQQMR 220
Query: 277 ADLASMWSPRNRVGYSRRITTIVSS 301
+ + + RNR R+ I+ S
Sbjct: 221 SLVVE--NRRNREERLARVRDILRS 243
>gi|403237624|ref|ZP_10916210.1| GTP pyrophosphokinase [Bacillus sp. 10403023]
Length = 729
Score = 129 bits (323), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 63/138 (45%), Positives = 89/138 (64%), Gaps = 10/138 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 SIKADISGRPKHIYSIYRKMVLQNKQFNEIYDLLAVRIVVN---------SIKDCYAVLG 283
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTVEMHQIAEYGIAAH 343
Query: 514 WLYKETGNKLQSISSMDE 531
W YKE G ++ SS +E
Sbjct: 344 WAYKE-GKQVNQQSSFEE 360
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 105/191 (54%), Gaps = 25/191 (13%)
Query: 100 ND-EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAML--IPSSGKRAVDTVVAGI 156
ND E +++A FA+ AH QFRK+G+PY+ H + IL L PS T+ G
Sbjct: 23 NDIEFIKRAYKFAEEAHKEQFRKSGEPYIIHPVQVAGILVDLEMDPS-------TIAGGF 75
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRRINVNQGTLG 210
LHDVV+D +L I + F EVA LV GV++L I Q HR++ V +
Sbjct: 76 LHDVVEDTNVTLQEISDAFSSEVAMLVDGVTKLGKIKYKSKEEQQAENHRKMFV---AMA 132
Query: 211 HE------ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 264
+ +LADRLHNMRT+ LPP K R ++ ETL I+ LA RLG+ +K ELED
Sbjct: 133 QDIRVILIKLADRLHNMRTLKHLPPEKQRRISNETLEIFAPLAHRLGISRIKWELEDTAL 192
Query: 265 AVLQPQIFRKM 275
L PQ + ++
Sbjct: 193 RYLNPQQYYRI 203
>gi|254429317|ref|ZP_05043024.1| RelA/SpoT family protein [Alcanivorax sp. DG881]
gi|196195486|gb|EDX90445.1| RelA/SpoT family protein [Alcanivorax sp. DG881]
Length = 724
Score = 129 bits (323), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 67/134 (50%), Positives = 87/134 (64%), Gaps = 11/134 (8%)
Query: 392 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 451
I G EV + R K +YSI+ KM++K + +VYD RA+R++V P ++ CY+
Sbjct: 233 ISGAEV--NGRAKHIYSIWRKMQKKHLDFGEVYDVRAVRILV---------PQVRDCYAA 281
Query: 452 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 511
L +VH LW + EFDDYI +PK +GYQSLHTAV GP+ LEVQIRT MHE AE G+
Sbjct: 282 LGVVHSLWQHVPKEFDDYIASPKGNGYQSLHTAVVGPERKMLEVQIRTFDMHEEAELGVC 341
Query: 512 AHWLYKETGNKLQS 525
AHW YKE K +S
Sbjct: 342 AHWRYKEGAKKGKS 355
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 19/169 (11%)
Query: 125 PYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVA 184
PY C+ G + ++ G + D + A IL+ V + +L +E+EFG +VA L+
Sbjct: 35 PYGKGCLDIGLEMGEVLVDLGADS-DILPAAILYRAVREGQITLLEVEKEFGPDVANLIE 93
Query: 185 GVSRLSYINQLLRRHRRINVNQ--GTLGHE----------------ELADRLHNMRTIYA 226
GV R++ I+ L R+ + Q G L + +LA+R +R +
Sbjct: 94 GVLRMAAISTSLNPTRKAVLGQQDGQLDNMRKMLVAMVDDVRVALVKLAERTVIIRAVKE 153
Query: 227 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
P + R VAQE I+ LA RLG+ LK ELEDL F LQP ++K+
Sbjct: 154 SEPERQRKVAQEIFDIYAPLAHRLGVGQLKWELEDLSFRYLQPGAYKKI 202
>gi|148658211|ref|YP_001278416.1| (p)ppGpp synthetase I SpoT/RelA [Roseiflexus sp. RS-1]
gi|148570321|gb|ABQ92466.1| (p)ppGpp synthetase I, SpoT/RelA [Roseiflexus sp. RS-1]
Length = 774
Score = 129 bits (323), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 87/147 (59%), Gaps = 18/147 (12%)
Query: 379 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 438
+ LEKE G++ ++ R K +YSI+ KM RK V + ++YD A+RV+V
Sbjct: 273 QVLEKE---------GIKADITGRPKHIYSIYRKMERKGVSLDQIYDQLAVRVIVD---- 319
Query: 439 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 498
+ CY +L +VH W P+ GEFDDYI PK S YQSLHT V P G E+QIR
Sbjct: 320 -----TVADCYRVLGLVHATWPPVPGEFDDYIAMPKESMYQSLHTTVLIPGGQPCEIQIR 374
Query: 499 TQKMHEYAEHGLAAHWLYKETGNKLQS 525
T +MHE AE G+AAHW YKE ++ +
Sbjct: 375 THEMHEVAERGIAAHWRYKEGFGRIDA 401
Score = 108 bits (271), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 106/199 (53%), Gaps = 14/199 (7%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
++E V+ A A A AH Q R +G+PY+ H + IL L + +V A +LHD
Sbjct: 70 SEELVRNAYAVACEAHGKQKRDSGEPYIDHPVAVAHILIDLQLDAA-----SVAAALLHD 124
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINV---------NQGTLG 210
V++D S + FG E+A LV V++LS + R ++ + +
Sbjct: 125 VLEDTLVSKEQLTALFGAEIANLVDSVTKLSALEARTREEAQVGTYRKMFIAMADDPRVV 184
Query: 211 HEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
+LADRLHNMRTI +L + + +A ETL I+ LA RLG+W +K ELED FAVL P+
Sbjct: 185 LVKLADRLHNMRTIGSLSEERQKRMALETLEIYAPLAHRLGIWQIKWELEDRAFAVLNPE 244
Query: 271 IFRKMRADLASMWSPRNRV 289
++++ L+ R R+
Sbjct: 245 KYQEISRQLSLRRDARERL 263
>gi|418288904|ref|ZP_12901320.1| GTP diphosphokinase [Neisseria meningitidis NM233]
gi|418291162|ref|ZP_12903210.1| GTP diphosphokinase [Neisseria meningitidis NM220]
gi|372200342|gb|EHP14431.1| GTP diphosphokinase [Neisseria meningitidis NM220]
gi|372200758|gb|EHP14784.1| GTP diphosphokinase [Neisseria meningitidis NM233]
Length = 737
Score = 129 bits (323), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 60/122 (49%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V I CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLTFDGLFDIRAVRILVD---------TIPECYTTLGIVHSL 308
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 519 TG 520
G
Sbjct: 369 GG 370
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 213 ELADRLHNMRTIYALPPA-KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
+LA R ++ + P + + RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+
Sbjct: 160 KLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEK 219
Query: 272 FRKM 275
+R++
Sbjct: 220 YREI 223
>gi|292487221|ref|YP_003530093.1| GTP pyrophosphokinase [Erwinia amylovora CFBP1430]
gi|291552640|emb|CBA19685.1| GTP pyrophosphokinase [Erwinia amylovora CFBP1430]
Length = 749
Score = 129 bits (323), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 84/127 (66%), Gaps = 9/127 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K +YSI+ KM++K + +++D RA+R+V +Q CY L
Sbjct: 249 GVKAEVYGRPKHIYSIWRKMQKKSLAFDELFDVRAIRIV---------AERLQDCYGALG 299
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH L+ + EFDDY+ NPKP+GYQS+HT V GP G +E+QIRT++MHE AE G+AAH
Sbjct: 300 IVHTLYRHLPNEFDDYVANPKPNGYQSIHTVVLGPQGKTVEIQIRTRQMHEDAELGVAAH 359
Query: 514 WLYKETG 520
W YKE G
Sbjct: 360 WKYKEGG 366
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 15/141 (10%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI------- 202
+T+ A +L + + S +E++FG + LV GV + I QL H
Sbjct: 79 ETLSAALLFPLANAGVVSEHVLEQQFGKAIVSLVHGVRDMDAIRQLKATHNDSMASEQVD 138
Query: 203 NVNQGTLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 254
NV + L E LA+R+ ++R + P + A+E I+ LA+RLG+
Sbjct: 139 NVRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQ 198
Query: 255 LKAELEDLCFAVLQPQIFRKM 275
LK ELED CF L P ++++
Sbjct: 199 LKWELEDFCFRYLHPDEYKRI 219
>gi|421555424|ref|ZP_16001357.1| GTP pyrophosphokinase [Neisseria meningitidis 98008]
gi|402330284|gb|EJU65632.1| GTP pyrophosphokinase [Neisseria meningitidis 98008]
Length = 737
Score = 129 bits (323), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 519 TG 520
G
Sbjct: 369 GG 370
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 213 ELADRLHNMRTIYALPPA-KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
+LA R ++ + P + + RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+
Sbjct: 160 KLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEK 219
Query: 272 FRKM 275
+R++
Sbjct: 220 YREI 223
>gi|315640053|ref|ZP_07895178.1| GTP diphosphokinase [Enterococcus italicus DSM 15952]
gi|315484181|gb|EFU74652.1| GTP diphosphokinase [Enterococcus italicus DSM 15952]
Length = 745
Score = 129 bits (323), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 77/181 (42%), Positives = 104/181 (57%), Gaps = 14/181 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
VQKA+ +A AH GQFRK+G+PY+ H I ILA L + TV G LHDVV+D
Sbjct: 36 VQKALDYATSAHEGQFRKSGEPYIIHPIQVAGILAEL-----QMDPHTVATGFLHDVVED 90
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRRINVNQGT---LGHEEL 214
+L + EEFG +VA LV GV++L I QL HR++ + + +L
Sbjct: 91 TDVTLQDLTEEFGPDVAMLVDGVTKLGKIKYKSHEEQLAENHRKMLIAMAQDLRVIMVKL 150
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHNMRT+ L K R +A+ETL I+ LA RLG+ +K ELED + PQ + +
Sbjct: 151 ADRLHNMRTLKHLREDKQRRIARETLDIYAPLAHRLGISRIKWELEDRSLRYINPQQYYR 210
Query: 275 M 275
+
Sbjct: 211 I 211
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/136 (44%), Positives = 84/136 (61%), Gaps = 10/136 (7%)
Query: 383 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 442
+EL I+T + + + R K +YSI+ KM K ++YD A+RV+V
Sbjct: 231 EELRIATEEL-DIYAEIYGRPKHIYSIYRKMVDKKKQFDEIYDLLAIRVIVD-------- 281
Query: 443 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 502
+I+ CY++L +H W P+ G F DYI PK + YQSLHT V GP+G+ +E+QIRT +M
Sbjct: 282 -SIKDCYAVLGTIHTKWKPMPGRFKDYIAMPKANMYQSLHTTVIGPNGNPVEIQIRTHEM 340
Query: 503 HEYAEHGLAAHWLYKE 518
HE AE G+AAHW YKE
Sbjct: 341 HEIAEFGVAAHWAYKE 356
>gi|375088782|ref|ZP_09735120.1| RelA/SpoT family protein [Dolosigranulum pigrum ATCC 51524]
gi|374561747|gb|EHR33086.1| RelA/SpoT family protein [Dolosigranulum pigrum ATCC 51524]
Length = 490
Score = 129 bits (323), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 95/168 (56%), Gaps = 15/168 (8%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+E ++ R K ++SI+ KMR + ++YD ALRV+V P+I+ CY +L
Sbjct: 234 IEADITGRPKHIFSIYKKMRNQKKQFSEIYDLLALRVIV---------PSIKDCYGVLGA 284
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
+H W P+ G F DYI PK + YQSLHT V GPD + LEVQIRT KMHE AE+G+AAHW
Sbjct: 285 IHTKWKPMPGRFKDYIAMPKANMYQSLHTTVLGPDATPLEVQIRTFKMHEIAEYGVAAHW 344
Query: 515 LYKETGNKLQSISSMDE------SDIEASSSLSKDTDDHNPLDTDLFQ 556
YKE MD+ IE + + +D + + D+F+
Sbjct: 345 AYKEGITTKAPTDEMDQHISWFRDIIELQTESNTASDFMDSIKQDIFK 392
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 98/194 (50%), Gaps = 14/194 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V++A A++AH GQ RK+G+ +++H + ILA L + TV G LHDVV+D
Sbjct: 28 VKRAYDLAEKAHAGQMRKSGEQFISHPVQVAAILAEL-----RMDPVTVATGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRL------SYINQLLRRHRRINVNQGT---LGHEEL 214
+ I E F EVA LV GV++L S HR++ + + +L
Sbjct: 83 TEYTYADIAELFNPEVADLVDGVTKLGKFKFKSKKEHQAENHRKMLIAMAQDVRVVLVKL 142
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHNMRT+ K +A ET+ I+ LA RLG+ +K ELED+ Q + +
Sbjct: 143 ADRLHNMRTLSYHRKEKQVDIATETMEIYAPLADRLGISRIKWELEDISLRYTNSQQYYR 202
Query: 275 MRADLASMWSPRNR 288
+ + S R R
Sbjct: 203 IVHMMNSRREDRER 216
>gi|307719606|ref|YP_003875138.1| GTP pyrophosphokinase [Spirochaeta thermophila DSM 6192]
gi|306533331|gb|ADN02865.1| probable GTP pyrophosphokinase [Spirochaeta thermophila DSM 6192]
Length = 662
Score = 129 bits (323), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 113/189 (59%), Gaps = 23/189 (12%)
Query: 99 FNDEQ---VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ DE+ VQ+A +A + H GQ R +G+PY++H + RILA L +G T++A
Sbjct: 18 YTDEEKARVQEAARWAAQLHEGQLRASGEPYISHPLEVARILADLGMDTG-----TLIAA 72
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI----NVNQGTLGH 211
+LHD ++D + I FG+EVA LV GV+++S L R+R+I ++ + L
Sbjct: 73 LLHDTIEDTGTTRDEIASRFGEEVALLVEGVTKIS---SLRARNRKIQAAESIRKMLLAM 129
Query: 212 EE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLC 263
+ LAD+LHNMRT+ LPPAK +A+A E L I+ LA RLG+ +LK ELEDL
Sbjct: 130 AKDIRVILIKLADKLHNMRTLQYLPPAKQKAIATECLEIYAPLAERLGMSSLKDELEDLA 189
Query: 264 FAVLQPQIF 272
LQP+++
Sbjct: 190 LKHLQPEVY 198
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ V + R K LYSI+ KM+RK + ++YD +R++ + CY+LL
Sbjct: 231 GIAVEIQMRRKHLYSIYQKMKRKARPLEEIYDVLGIRLLCNTETE---------CYTLLG 281
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVHRL+ P++G F DYI PK + YQSLHT V P G+ +EVQIRT +MH AE+G+AAH
Sbjct: 282 IVHRLYKPLEGRFKDYIAMPKANRYQSLHTTVMVPGGTLVEVQIRTHQMHRTAEYGIAAH 341
Query: 514 WLYKE 518
WLYKE
Sbjct: 342 WLYKE 346
>gi|121997760|ref|YP_001002547.1| (p)ppGpp synthetase I SpoT/RelA [Halorhodospira halophila SL1]
gi|121589165|gb|ABM61745.1| (p)ppGpp synthetase I, SpoT/RelA [Halorhodospira halophila SL1]
Length = 729
Score = 129 bits (323), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 110/188 (58%), Gaps = 14/188 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
EQV A F+ AH GQ R++G+PY+TH I RILA + + + VVA +LHDV+
Sbjct: 40 EQVYDAYRFSAAAHEGQRRRSGEPYITHPIAVARILAEM-----RLDAEAVVAALLHDVI 94
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------QLLRRHRRINVNQGTLGHE 212
+D + I E FG++VA+LV GVS+L I+ + R+ +
Sbjct: 95 EDTPTAKERIAERFGEQVAELVDGVSKLGAIDFQSKEEAQAESFRKMILAMAKDIRVILI 154
Query: 213 ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 272
+LADRLHNMRTI+ + P K R +A+ETL I+ +A RLG+ +L+ ELEDL FA P +
Sbjct: 155 KLADRLHNMRTIWIMRPEKRRRIARETLDIYAPIAQRLGINSLRTELEDLGFAAHYPLRY 214
Query: 273 RKMRADLA 280
R ++ LA
Sbjct: 215 RALKEKLA 222
Score = 109 bits (273), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 75/134 (55%), Gaps = 12/134 (8%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K L+SI+ KM +K + V+D RVVV + CY +L
Sbjct: 247 GIQAEVVGREKHLWSIYCKMAQKQLNFRDVFDVYGFRVVVD---------TVDECYRVLG 297
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
I+H L+ P G DYI PK +GYQSLHT + GP LE QIRT+ MH AE G+AAH
Sbjct: 298 ILHGLYKPRPGRIKDYIAIPKANGYQSLHTTLVGPHRIRLEAQIRTRDMHAVAESGIAAH 357
Query: 514 WLYK---ETGNKLQ 524
W YK E+GN Q
Sbjct: 358 WFYKDAGESGNTAQ 371
>gi|307264529|ref|ZP_07546113.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 13 str. N273]
gi|306870128|gb|EFN01888.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 13 str. N273]
Length = 568
Score = 129 bits (323), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 110/194 (56%), Gaps = 15/194 (7%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E V++A A+ AH GQ R +G+PY+TH + I+A + K +
Sbjct: 11 IQGYLPADKIELVKRAFVIARDAHEGQTRSSGEPYITHPVAVASIIAEM-----KLDHEA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLG 210
V+A +LHDV++D + + EFG VA++V GVS+L + R+ ++ N + L
Sbjct: 66 VMAALLHDVIEDTPYTEEQLAAEFGSSVAEIVQGVSKLDKLKFRTRQEAQVENFRKMILA 125
Query: 211 HEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 262
+ LADR HNMRT+ AL P K R +A+ETL I+ LA RLG+ LK ELEDL
Sbjct: 126 MTKDIRVVLIKLADRTHNMRTLGALRPDKRRRIAKETLEIYSPLAHRLGIEHLKNELEDL 185
Query: 263 CFAVLQPQIFRKMR 276
CF + P +R +R
Sbjct: 186 CFQAMHPHRYRVLR 199
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 72/125 (57%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K LYS++ KMR++D H + D A RVVV + + CY L
Sbjct: 228 GIKGRVYGREKHLYSLYEKMRQRDQHFHSILDIYAFRVVVEN---------LDNCYRALG 278
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+H L+ P + DYI PK +GYQSLHT++ G G +EVQIRT+ M AE G+AAH
Sbjct: 279 QMHALYKPRPYKIRDYIAVPKTNGYQSLHTSMIGHKGVPIEVQIRTEDMDLMAELGVAAH 338
Query: 514 WLYKE 518
W Y E
Sbjct: 339 WRYTE 343
>gi|284105197|ref|ZP_06386190.1| Guanosine polyphosphate pyrophosphohydrolase/synthetase [Candidatus
Poribacteria sp. WGA-A3]
gi|283830148|gb|EFC34409.1| Guanosine polyphosphate pyrophosphohydrolase/synthetase [Candidatus
Poribacteria sp. WGA-A3]
Length = 728
Score = 129 bits (323), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 114/194 (58%), Gaps = 14/194 (7%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP ++ +++A AF+ +AH GQ R++G+PYL H + IL L K V +VAG
Sbjct: 20 YPEADEALLRRAYAFSAKAHEGQTRRSGEPYLQHPVAVAGILTFL-----KLDVTAIVAG 74
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRL------SYINQLLRRHRRINVNQGT- 208
+LHD ++D + ++ FG EVA LV GV+++ +Y + R++ ++
Sbjct: 75 LLHDTLEDTVATQEELQTHFGHEVAHLVEGVTKIGQIPFRTYEEKQAENFRKMLLSMADD 134
Query: 209 --LGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAV 266
+ +LADRLHNMRT+ LP K + +AQETL I+ LA+RLG+ LK ELEDLCF
Sbjct: 135 IRVVFIKLADRLHNMRTLGHLPEDKQKQIAQETLEIYSPLANRLGMSWLKQELEDLCFQY 194
Query: 267 LQPQIFRKMRADLA 280
L+ + + ++ +A
Sbjct: 195 LKTEAYSLLKLRVA 208
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 96/173 (55%), Gaps = 15/173 (8%)
Query: 387 ISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQ 446
++ + +PG V R K LYSI KM + + +V+D A+R++ G K+
Sbjct: 229 LAAAELPGHVV---GRPKHLYSIHQKMESQGITFEEVHDLVAIRIITGTKSN-------- 277
Query: 447 CCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYA 506
CY++L +VH LW P+ G F DYI P+ + YQSLHT V GP G +E QIRT++MH A
Sbjct: 278 -CYTILGLVHSLWPPVPGRFKDYIATPRTNLYQSLHTTVLGPQGDHVEFQIRTEEMHRLA 336
Query: 507 EHGLAAHWLYKE---TGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQ 556
E+G+AAHW YKE ++ + + S +E LS + + + DLF
Sbjct: 337 EYGVAAHWRYKEQVKVDDRDEKVFSWLRQFVEWHKDLSDNRQFMDSVKLDLFH 389
>gi|421559753|ref|ZP_16005622.1| GTP pyrophosphokinase [Neisseria meningitidis 92045]
gi|402334752|gb|EJU70031.1| GTP pyrophosphokinase [Neisseria meningitidis 92045]
Length = 737
Score = 129 bits (323), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 519 TG 520
G
Sbjct: 369 GG 370
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 213 ELADRLHNMRTIYALPPA-KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
+LA R ++ + P + + RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+
Sbjct: 160 KLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEK 219
Query: 272 FRKM 275
+R++
Sbjct: 220 YREI 223
>gi|349610831|ref|ZP_08890155.1| hypothetical protein HMPREF1028_02130 [Neisseria sp. GT4A_CT1]
gi|348615549|gb|EGY65064.1| hypothetical protein HMPREF1028_02130 [Neisseria sp. GT4A_CT1]
Length = 737
Score = 129 bits (323), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 519 TG 520
G
Sbjct: 369 GG 370
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 24/172 (13%)
Query: 123 GDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKL 182
G+P L H + +++ L S D V A +L D+ + + E VA+L
Sbjct: 57 GEPLLDHLLGAAQMVNELDLLS-----DAVAATLLADIGRYVPDWNLLVSERCNSTVAEL 111
Query: 183 VAGVSRLSYINQLLRRHRRINVNQGTLGHE------------------ELADRLHNMRTI 224
V GV + + R + E +LA R M+ +
Sbjct: 112 VKGVDEVQKLTHFARVDSLATSEERAQQAETMRKMLLAMVTDIRVVLIKLAMRTRTMQFL 171
Query: 225 YALPPA-KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
+P + + RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 172 SNIPDSPEKRAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|340363908|ref|ZP_08686219.1| GTP diphosphokinase [Neisseria macacae ATCC 33926]
gi|339884612|gb|EGQ74382.1| GTP diphosphokinase [Neisseria macacae ATCC 33926]
Length = 779
Score = 129 bits (323), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 80/123 (65%), Gaps = 9/123 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 300 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 350
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 351 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 410
Query: 519 TGN 521
G
Sbjct: 411 GGK 413
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 31/204 (15%)
Query: 95 GYPIFNDEQVQKAIAFAKRAHHGQFRKT--GDPYLTHCIHTGRILAML--IPSSGKRAVD 150
G P + +Q A++ A+ H+ T G+P L H + R++ L +P D
Sbjct: 70 GLPEPAQKLLQTALSLAE-THYPADAATPAGEPLLAHLLGAARMVNELDLLP-------D 121
Query: 151 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 210
V A +L D+V + + E VA+LV GV + + R +
Sbjct: 122 AVAATLLADIVRFVPDWRELLTERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERAQQ 181
Query: 211 HE------------------ELADRLHNMRTIYALPPA-KARAVAQETLLIWCSLASRLG 251
E +LA R M+ + +P + + RAVA+ETL I+ LA+RLG
Sbjct: 182 AETMRKMLLAMVTDIRVVLIKLAMRTRTMQFLSNIPDSPEKRAVAKETLDIFAPLANRLG 241
Query: 252 LWALKAELEDLCFAVLQPQIFRKM 275
+W LK +LEDL F +P+ +R++
Sbjct: 242 VWQLKWQLEDLGFRHQEPEKYREI 265
>gi|260898313|ref|ZP_05906809.1| GTP diphosphokinase [Vibrio parahaemolyticus Peru-466]
gi|308085243|gb|EFO34938.1| GTP diphosphokinase [Vibrio parahaemolyticus Peru-466]
Length = 377
Score = 129 bits (323), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 92/138 (66%), Gaps = 12/138 (8%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 VVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 353
Query: 514 WLYKETGNKLQSISSMDE 531
W YKE+ + S S DE
Sbjct: 354 WKYKESAS---SRSGYDE 368
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 102/226 (45%), Gaps = 24/226 (10%)
Query: 134 GR-ILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYI 192
GR ++ +LI S +A T+VA L +V + +EE++ E+ KL+ GV ++ I
Sbjct: 58 GREMIEILITLSMDKA--TLVAAQLFPLVSSGAFNRELLEEKYSKEIIKLIDGVEEMAAI 115
Query: 193 NQL---------------LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQ 237
QL +RR V+ +LA+R+ N+ + P RA A+
Sbjct: 116 GQLNVTMEGSAASSQVDNVRRMLLAMVDDFRCVVIKLAERICNLIEVKKAPDEVRRAAAK 175
Query: 238 ETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITT 297
E I+ LA+RLG+ LK E+ED F QP ++++ LA R+ + I
Sbjct: 176 ECANIYAPLANRLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLAE-----RRIVREQYIKD 230
Query: 298 IVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 342
V + + + + +H+ S+ + + + + FD L D R
Sbjct: 231 FVEDLSQEMKACGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVR 276
>gi|359786287|ref|ZP_09289423.1| GTP pyrophosphokinase [Halomonas sp. GFAJ-1]
gi|359296401|gb|EHK60653.1| GTP pyrophosphokinase [Halomonas sp. GFAJ-1]
Length = 758
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/119 (50%), Positives = 79/119 (66%), Gaps = 9/119 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+S R K +YSI+ KM+RK + +V+D RA+R++V P + CY++L IVH
Sbjct: 259 VSGRAKHIYSIWRKMKRKRIDFSQVHDVRAVRILV---------PEVTDCYTVLGIVHSC 309
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 517
W + EFDDYI NPK +GYQSLHTAV GPD +E+QIRT MH+ AE G+ AHW YK
Sbjct: 310 WHHVPNEFDDYIANPKKNGYQSLHTAVMGPDNKVIEIQIRTFAMHDEAELGVCAHWRYK 368
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 15/153 (9%)
Query: 151 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYI------NQLLRRH----- 199
T+ A +L+ V + S+ ++ + FG EVA+L+ GV +++ I N + +H
Sbjct: 84 TLEAAVLYRAVREGLLSIDAVTKRFGSEVAQLIDGVLQMAAISYPLTPNHAMGQHNQQEN 143
Query: 200 -RRINVN---QGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 255
R++ VN + ++A+R +R + P K VA+E I+ LA RLG+ +
Sbjct: 144 LRKMLVNMVGDVRVALIKIAERTCALRQVKDAPREKCLQVAREVADIYAPLAHRLGIGQI 203
Query: 256 KAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 288
K ELEDL F L ++ + LA R+R
Sbjct: 204 KWELEDLSFRYLHEDDYKAIAKLLAEKRLDRDR 236
>gi|255066124|ref|ZP_05317979.1| GTP diphosphokinase [Neisseria sicca ATCC 29256]
gi|255049669|gb|EET45133.1| GTP diphosphokinase [Neisseria sicca ATCC 29256]
Length = 737
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 519 TG 520
G
Sbjct: 369 GG 370
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 24/172 (13%)
Query: 123 GDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKL 182
G+P L H + +++ L S D V A +L D+ + + E VA+L
Sbjct: 57 GEPLLDHLLGAAQMVNELDLLS-----DAVAATLLADIGRYVPDWNLLVSERCNSTVAEL 111
Query: 183 VAGVSRLSYINQLLRRHRRINVNQGTLGHE------------------ELADRLHNMRTI 224
V GV + + R + E +LA R M+ +
Sbjct: 112 VKGVDEVQKLTHFARVDSLATSEERAQQAETMRKMLLAMVTDIRVVLIKLAMRTRTMQFL 171
Query: 225 YALPPA-KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
+P + + RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 172 SEVPDSPEKRAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|410637830|ref|ZP_11348400.1| GTP pyrophosphokinase [Glaciecola lipolytica E3]
gi|410142516|dbj|GAC15605.1| GTP pyrophosphokinase [Glaciecola lipolytica E3]
Length = 718
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/124 (49%), Positives = 83/124 (66%), Gaps = 9/124 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+ V + R K +YSI+ KM++K + ++YD RA+R++ +Q CYS L I
Sbjct: 231 INVKVYGRPKHIYSIWKKMQKKHLSFDQLYDIRAVRII---------ADRLQDCYSALGI 281
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH L+ I EFDDYI PKP+GYQS+HT V GP G ++E+QIRTQ+MH+ AE G+AAHW
Sbjct: 282 VHSLFKHIPNEFDDYIATPKPNGYQSIHTVVVGPQGRSVEIQIRTQQMHQDAELGIAAHW 341
Query: 515 LYKE 518
YKE
Sbjct: 342 KYKE 345
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 19/130 (14%)
Query: 165 CESLG----SIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-------NVNQGTLGHEE 213
CE G IEEEFG + L++GV R+ I L R + N+ + L E
Sbjct: 71 CELHGLDDEQIEEEFGKGIRNLISGVRRMDAIKTLHSRSNKKADEVQIDNIRRMLLAMVE 130
Query: 214 --------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFA 265
LA+R+ ++ + VA+E I+ LA+RLG+ LK E+EDL F
Sbjct: 131 DVRTVLIKLAERICTLQKMKKADEETRVIVARECSTIYAPLANRLGIGQLKWEIEDLSFR 190
Query: 266 VLQPQIFRKM 275
L P+ ++++
Sbjct: 191 YLHPEKYKQI 200
>gi|419796195|ref|ZP_14321755.1| RelA/SpoT family protein [Neisseria sicca VK64]
gi|385699737|gb|EIG30014.1| RelA/SpoT family protein [Neisseria sicca VK64]
Length = 737
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 519 TG 520
G
Sbjct: 369 GG 370
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 24/172 (13%)
Query: 123 GDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKL 182
G+P L H + +++ L S D V A +L D+ + + E VA+L
Sbjct: 57 GEPLLDHLLGAAQMVNELDLLS-----DAVAATLLADIGRYVPDWNLLVSERCNSTVAEL 111
Query: 183 VAGVSRLSYINQLLRRHRRINVNQGTLGHE------------------ELADRLHNMRTI 224
V GV + + R + E +LA R M+ +
Sbjct: 112 VKGVDEVQKLTHFARVDSLATSEERAQQAETMRKMLLAMVTDIRVVLIKLAMRTRTMQFL 171
Query: 225 YALPPA-KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
+P + + RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 172 SNIPDSPEKRAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|433537218|ref|ZP_20493718.1| relA/SpoT family protein [Neisseria meningitidis 77221]
gi|389605160|emb|CCA44081.1| GTP pyrophosphokinase [Neisseria meningitidis alpha522]
gi|432272414|gb|ELL27524.1| relA/SpoT family protein [Neisseria meningitidis 77221]
Length = 737
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 519 TG 520
G
Sbjct: 369 GG 370
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 213 ELADRLHNMRTIYALPPA-KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
+LA R ++ + P + + RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+
Sbjct: 160 KLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEK 219
Query: 272 FRKM 275
+R++
Sbjct: 220 YREI 223
>gi|421549362|ref|ZP_15995379.1| GTP pyrophosphokinase [Neisseria meningitidis NM2781]
gi|402324184|gb|EJU59621.1| GTP pyrophosphokinase [Neisseria meningitidis NM2781]
Length = 737
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 519 TG 520
G
Sbjct: 369 GG 370
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 85/199 (42%), Gaps = 30/199 (15%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKT--GDPYLTHCIHTGRILAML--IPSSGKRAVDTVVAG 155
ND+++ A AH+ T G+P H + +I+ L +P D V A
Sbjct: 32 NDKKLVLAARSLAEAHYPADSATPYGEPLSDHFLGAAQIVHELDLLP-------DAVAAT 84
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELA 215
+L D+ + + E VA+LV GV + + R + E +
Sbjct: 85 LLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERAQQAETMR 144
Query: 216 DRLHNM---------------RTIYALPPA----KARAVAQETLLIWCSLASRLGLWALK 256
L M RT+ L A + RAVA+ETL I+ LA+RLG+W LK
Sbjct: 145 KMLLAMVTDIRVVLIKLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLANRLGVWQLK 204
Query: 257 AELEDLCFAVLQPQIFRKM 275
+LEDL F +P+ +R++
Sbjct: 205 WQLEDLGFRHQEPEKYREI 223
>gi|421543008|ref|ZP_15989109.1| GTP pyrophosphokinase [Neisseria meningitidis NM255]
gi|402316087|gb|EJU51640.1| GTP pyrophosphokinase [Neisseria meningitidis NM255]
Length = 737
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 519 TG 520
G
Sbjct: 369 GG 370
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 213 ELADRLHNMRTIYALPPA-KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
+LA R ++ + P + + RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+
Sbjct: 160 KLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEK 219
Query: 272 FRKM 275
+R++
Sbjct: 220 YREI 223
>gi|304386781|ref|ZP_07369048.1| GTP diphosphokinase [Neisseria meningitidis ATCC 13091]
gi|304339131|gb|EFM05218.1| GTP diphosphokinase [Neisseria meningitidis ATCC 13091]
Length = 773
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/122 (49%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V I CY+ L IVH L
Sbjct: 294 VAGRPKHIYSIYKKMVKKKLTFDGLFDIRAVRILVD---------TIPECYTTLGIVHSL 344
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 345 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 404
Query: 519 TG 520
G
Sbjct: 405 GG 406
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 90/199 (45%), Gaps = 30/199 (15%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKT--GDPYLTHCIHTGRILAML--IPSSGKRAVDTVVAG 155
ND+++ A AH+ T G+P H + +++ L +P D V A
Sbjct: 68 NDKKLVLAARSLAEAHYPADAATPYGEPLPDHFLGAAQMVHELDLLP-------DAVAAT 120
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLR---------RHRRINVNQ 206
+L D+ + + E VA+LV GV + + R R R+ + +
Sbjct: 121 LLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERARQAEIMR 180
Query: 207 GTLGHE---------ELADRLHNMRTIYALPPA-KARAVAQETLLIWCSLASRLGLWALK 256
L +LA R ++ + P + + RAVA+ETL I+ LA+RLG+W LK
Sbjct: 181 KMLLAMVTDIRVVLIKLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLANRLGVWQLK 240
Query: 257 AELEDLCFAVLQPQIFRKM 275
+LEDL F +P+ +R++
Sbjct: 241 WQLEDLGFRHQEPEKYREI 259
>gi|385341409|ref|YP_005895280.1| GTP diphosphokinase [Neisseria meningitidis M01-240149]
gi|385857760|ref|YP_005904272.1| GTP diphosphokinase [Neisseria meningitidis NZ-05/33]
gi|416188777|ref|ZP_11614969.1| GTP diphosphokinase [Neisseria meningitidis M0579]
gi|421566004|ref|ZP_16011766.1| GTP-pyrophosphokinase [Neisseria meningitidis NM3081]
gi|325135675|gb|EGC58289.1| GTP diphosphokinase [Neisseria meningitidis M0579]
gi|325201615|gb|ADY97069.1| GTP diphosphokinase [Neisseria meningitidis M01-240149]
gi|325208649|gb|ADZ04101.1| GTP diphosphokinase [Neisseria meningitidis NZ-05/33]
gi|402341886|gb|EJU77058.1| GTP-pyrophosphokinase [Neisseria meningitidis NM3081]
Length = 737
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 519 TG 520
G
Sbjct: 369 GG 370
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 213 ELADRLHNMRTIYALPPA-KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
+LA R ++ + P + + RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+
Sbjct: 160 KLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEK 219
Query: 272 FRKM 275
+R++
Sbjct: 220 YREI 223
>gi|433522508|ref|ZP_20479192.1| relA/SpoT family protein [Neisseria meningitidis 61103]
gi|432258117|gb|ELL13408.1| relA/SpoT family protein [Neisseria meningitidis 61103]
Length = 737
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 81/122 (66%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+++R K +YSI+ KM +K + ++D RA+R+++ + CY+ L IVH L
Sbjct: 258 VAARPKHIYSIYKKMVKKKLSFDGLFDIRAVRILID---------TVPECYTTLGIVHSL 308
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 519 TG 520
G
Sbjct: 369 GG 370
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 213 ELADRLHNMRTIYALPPA-KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
+LA R ++ + P + + RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+
Sbjct: 160 KLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEK 219
Query: 272 FRKM 275
+R++
Sbjct: 220 YREI 223
>gi|421541039|ref|ZP_15987174.1| GTP-pyrophosphokinase [Neisseria meningitidis 93004]
gi|402316766|gb|EJU52307.1| GTP-pyrophosphokinase [Neisseria meningitidis 93004]
Length = 737
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 519 TG 520
G
Sbjct: 369 GG 370
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 213 ELADRLHNMRTIYALPPA-KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
+LA R ++ + P + + RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+
Sbjct: 160 KLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEK 219
Query: 272 FRKM 275
+R++
Sbjct: 220 YREI 223
>gi|416168553|ref|ZP_11608013.1| GTP diphosphokinase [Neisseria meningitidis OX99.30304]
gi|325130789|gb|EGC53524.1| GTP diphosphokinase [Neisseria meningitidis OX99.30304]
Length = 737
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 519 TG 520
G
Sbjct: 369 GG 370
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 213 ELADRLHNMRTIYALPPA-KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
+LA R ++ + P + + RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+
Sbjct: 160 KLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEK 219
Query: 272 FRKM 275
+R++
Sbjct: 220 YREI 223
>gi|385338570|ref|YP_005892443.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase; ppGpp
synthetase I; (P)ppGpp synthetase) [Neisseria
meningitidis WUE 2594]
gi|433476178|ref|ZP_20433514.1| relA/SpoT family protein [Neisseria meningitidis 88050]
gi|433480304|ref|ZP_20437588.1| relA/SpoT family protein [Neisseria meningitidis 63041]
gi|433516288|ref|ZP_20473052.1| relA/SpoT family protein [Neisseria meningitidis 2004090]
gi|433517081|ref|ZP_20473832.1| relA/SpoT family protein [Neisseria meningitidis 96023]
gi|433520443|ref|ZP_20477157.1| relA/SpoT family protein [Neisseria meningitidis 65014]
gi|433524667|ref|ZP_20481324.1| relA/SpoT family protein [Neisseria meningitidis 97020]
gi|433528943|ref|ZP_20485550.1| relA/SpoT family protein [Neisseria meningitidis NM3652]
gi|433531037|ref|ZP_20487620.1| relA/SpoT family protein [Neisseria meningitidis NM3642]
gi|433533304|ref|ZP_20489862.1| relA/SpoT family protein [Neisseria meningitidis 2007056]
gi|433535188|ref|ZP_20491722.1| relA/SpoT family protein [Neisseria meningitidis 2001212]
gi|433541616|ref|ZP_20498062.1| relA/SpoT family protein [Neisseria meningitidis 63006]
gi|319410984|emb|CBY91380.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase; ppGpp
synthetase I; (P)ppGpp synthetase) [Neisseria
meningitidis WUE 2594]
gi|432208694|gb|ELK64670.1| relA/SpoT family protein [Neisseria meningitidis 88050]
gi|432214480|gb|ELK70380.1| relA/SpoT family protein [Neisseria meningitidis 63041]
gi|432251574|gb|ELL06938.1| relA/SpoT family protein [Neisseria meningitidis 2004090]
gi|432252740|gb|ELL08091.1| relA/SpoT family protein [Neisseria meningitidis 65014]
gi|432255155|gb|ELL10486.1| relA/SpoT family protein [Neisseria meningitidis 96023]
gi|432258353|gb|ELL13639.1| relA/SpoT family protein [Neisseria meningitidis 97020]
gi|432264047|gb|ELL19257.1| relA/SpoT family protein [Neisseria meningitidis NM3652]
gi|432264848|gb|ELL20045.1| relA/SpoT family protein [Neisseria meningitidis NM3642]
gi|432265432|gb|ELL20627.1| relA/SpoT family protein [Neisseria meningitidis 2007056]
gi|432270207|gb|ELL25348.1| relA/SpoT family protein [Neisseria meningitidis 2001212]
gi|432276448|gb|ELL31505.1| relA/SpoT family protein [Neisseria meningitidis 63006]
Length = 737
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 519 TG 520
G
Sbjct: 369 GG 370
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 213 ELADRLHNMRTIYALPPA-KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
+LA R ++ + P + + RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+
Sbjct: 160 KLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEK 219
Query: 272 FRKM 275
+R++
Sbjct: 220 YREI 223
>gi|225076079|ref|ZP_03719278.1| hypothetical protein NEIFLAOT_01111 [Neisseria flavescens
NRL30031/H210]
gi|224952578|gb|EEG33787.1| hypothetical protein NEIFLAOT_01111 [Neisseria flavescens
NRL30031/H210]
Length = 737
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 80/123 (65%), Gaps = 9/123 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 519 TGN 521
G
Sbjct: 369 GGK 371
Score = 59.3 bits (142), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 93/206 (45%), Gaps = 31/206 (15%)
Query: 93 VTGYPIFNDEQVQKAIAFAKRAHHGQFRKT-GDPYLTHCIHTGRILAML--IPSSGKRAV 149
V P + +Q A AK + T +P L H + + +I++ L +P
Sbjct: 26 VAALPDSDKNLIQTAFDLAKEHYPADALTTYSEPLLEHFLGSMQIVSELDLLP------- 78
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLR---------RHR 200
D V A IL D+ + E VA+LV GV + + Q R R R
Sbjct: 79 DAVAATILSDIGKYVPTWHELVSERCNSTVAELVKGVDEVQKLTQFARVDSLATPEERAR 138
Query: 201 RINVNQGTLGHE---------ELADRLHNMRTIYALP--PAKARAVAQETLLIWCSLASR 249
+ + + L +LA R ++ + +P P K RAVA+ETL I+ LA+R
Sbjct: 139 QAEIMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNVPDNPEK-RAVAKETLDIFAPLANR 197
Query: 250 LGLWALKAELEDLCFAVLQPQIFRKM 275
LG+W LK +LEDL F +P+ +R++
Sbjct: 198 LGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|340751522|ref|ZP_08688334.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Fusobacterium mortiferum ATCC 9817]
gi|229420490|gb|EEO35537.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Fusobacterium mortiferum ATCC 9817]
Length = 727
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 111/193 (57%), Gaps = 14/193 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E+++ A FA+ H GQ+RK+G+ Y+ H + +IL + K DT+VAGILHD+V
Sbjct: 21 EKIKLAFFFAEECHEGQYRKSGEDYIMHPVEVTKILIDM-----KMDTDTIVAGILHDIV 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE-------- 213
+D +L I+ FG+ VA LV GV++L + ++ N+ + L +
Sbjct: 76 EDTLITLADIKYNFGETVATLVDGVTKLKTLPNGTKKQDE-NIRKMILAMAQNLRVIIIK 134
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LADRLHNMRT+ + P K +++QETL I+ LA RLG+ +K ELEDL L+P+ +
Sbjct: 135 LADRLHNMRTMKYMKPEKQISISQETLDIYAPLAHRLGIAKIKWELEDLALRYLKPKEYM 194
Query: 274 KMRADLASMWSPR 286
+++ + S R
Sbjct: 195 NIKSLIDSKKKER 207
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 80/135 (59%), Gaps = 9/135 (6%)
Query: 384 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 443
E +++ + G++ ++ R K YSI+ KM K+ +YD +R++V D G
Sbjct: 216 ETIVNLLHETGIKGSVKGRFKHFYSIYKKMYEKNKEFDDIYDLMGVRIIV-DTEGE---- 270
Query: 444 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 503
CY+ L ++H + P+ G F DYI PK + YQS+HT + GP G +E+QIRT++M
Sbjct: 271 ----CYNTLGVIHSHFKPVPGRFKDYIAVPKSNNYQSIHTTIVGPQGKFIEIQIRTEEMD 326
Query: 504 EYAEHGLAAHWLYKE 518
+ AE G+AAHW YKE
Sbjct: 327 KVAEEGIAAHWSYKE 341
>gi|261378943|ref|ZP_05983516.1| GTP diphosphokinase [Neisseria cinerea ATCC 14685]
gi|269144641|gb|EEZ71059.1| GTP diphosphokinase [Neisseria cinerea ATCC 14685]
Length = 737
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 519 TG 520
G
Sbjct: 369 GG 370
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 78/174 (44%), Gaps = 28/174 (16%)
Query: 123 GDPYLTHCIHTGRILAML--IPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVA 180
G+P L H + +++ L +P D V A +L D+ + + E VA
Sbjct: 57 GEPLLDHFLGAAQMVHELDLLP-------DAVAATLLADIGRYVPDWNLLVSERCNSTVA 109
Query: 181 KLVAGVSRLSYINQLLRRHRRINVNQGTLGHE------------------ELADRLHNMR 222
+LV GV + + R + E +LA R M+
Sbjct: 110 ELVKGVDEVQKLTHFARVDSLATPEERAQQAETMRKMLLAMVTDIRVVLIKLAMRTRTMQ 169
Query: 223 TIYALPPA-KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
+ +P + + RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 170 FLSNIPDSPEKRAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|114321589|ref|YP_743272.1| (p)ppGpp synthetase I SpoT/RelA [Alkalilimnicola ehrlichii MLHE-1]
gi|114227983|gb|ABI57782.1| (p)ppGpp synthetase I, SpoT/RelA [Alkalilimnicola ehrlichii MLHE-1]
Length = 730
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 111/187 (59%), Gaps = 14/187 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
+QV +A F AH GQ R +G+PY+TH + RILA + + D++VA ILHDV+
Sbjct: 39 QQVYEAYRFGAEAHAGQRRLSGEPYITHPLAVARILAEM-----RMDGDSIVAAILHDVI 93
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLGHE-------- 212
+D + + +FGD+VA+LV GVS+L+ I+ + + N + L
Sbjct: 94 EDTPTAKEQLRSQFGDDVAELVDGVSKLTQIDFKSKAEAQAENFRKMVLAMARDIRVILI 153
Query: 213 ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 272
+LADRLHNMRTI+ + P K R +A+ETL I+ +A RLG+ ++ ELEDL FA L P +
Sbjct: 154 KLADRLHNMRTIWVMAPHKRRRIARETLEIYAPIAQRLGINTVRVELEDLGFAALYPLRY 213
Query: 273 RKMRADL 279
R ++ L
Sbjct: 214 RVLKEKL 220
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 73/123 (59%), Gaps = 9/123 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+S R K L+SI+ KM+ K + V+D RV+V ++ CY +L ++H L
Sbjct: 251 VSGREKHLWSIYQKMQTKGLNFRDVFDVYGFRVLV---------ESVDDCYRMLGVLHGL 301
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
+ P G DYI PK +GYQSLHT + GP LEVQ+RT +M + AE G+AAHWLYK
Sbjct: 302 YKPRPGRVKDYIAIPKANGYQSLHTTLIGPHRIRLEVQVRTWEMDQVAESGIAAHWLYKS 361
Query: 519 TGN 521
GN
Sbjct: 362 EGN 364
>gi|433474076|ref|ZP_20431434.1| relA/SpoT family protein [Neisseria meningitidis 97021]
gi|433482578|ref|ZP_20439834.1| relA/SpoT family protein [Neisseria meningitidis 2006087]
gi|433484504|ref|ZP_20441725.1| relA/SpoT family protein [Neisseria meningitidis 2002038]
gi|433486472|ref|ZP_20443668.1| relA/SpoT family protein [Neisseria meningitidis 97014]
gi|432208608|gb|ELK64585.1| relA/SpoT family protein [Neisseria meningitidis 97021]
gi|432214776|gb|ELK70671.1| relA/SpoT family protein [Neisseria meningitidis 2006087]
gi|432219898|gb|ELK75729.1| relA/SpoT family protein [Neisseria meningitidis 2002038]
gi|432222285|gb|ELK78084.1| relA/SpoT family protein [Neisseria meningitidis 97014]
Length = 737
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 519 TG 520
G
Sbjct: 369 GG 370
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 213 ELADRLHNMRTIYALPPA-KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
+LA R ++ + P + + RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+
Sbjct: 160 KLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEK 219
Query: 272 FRKM 275
+R++
Sbjct: 220 YREI 223
>gi|261364097|ref|ZP_05976980.1| GTP diphosphokinase [Neisseria mucosa ATCC 25996]
gi|288567664|gb|EFC89224.1| GTP diphosphokinase [Neisseria mucosa ATCC 25996]
Length = 737
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 519 TG 520
G
Sbjct: 369 GG 370
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 78/174 (44%), Gaps = 28/174 (16%)
Query: 123 GDPYLTHCIHTGRILAML--IPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVA 180
G+P L H + +++ L +P D V A +L D+ + + E VA
Sbjct: 57 GEPLLDHFLGAAQMVNELDLLP-------DAVAATLLADIGRYVPDWNLLVSERCNSTVA 109
Query: 181 KLVAGVSRLSYINQLLRRHRRINVNQGTLGHE------------------ELADRLHNMR 222
+LV GV + + R + E +LA R M+
Sbjct: 110 ELVKGVDEVQKLTHFARVDSLATPEERAQQAETMRKMLLAMVTDIRVVLIKLAMRTRTMQ 169
Query: 223 TIYALPPA-KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
+ +P + + RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 170 FLSEVPDSPEKRAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|345023332|ref|ZP_08786945.1| GTP pyrophosphokinase [Ornithinibacillus scapharcae TW25]
Length = 732
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 111/205 (54%), Gaps = 18/205 (8%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A +A++AH GQFRK+G+ Y+ H I IL L K +T+ G LHDVV+D
Sbjct: 30 RAYQYAEKAHEGQFRKSGEAYIIHPIQVAGILVDL-----KMDPETIAGGFLHDVVEDTD 84
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRRINVNQGT---LGHEELAD 216
+L IEEEF EVA LV GV++L I Q HR++ V + +LAD
Sbjct: 85 ITLEMIEEEFNKEVAMLVDGVTKLGKIKYKSKEAQQAENHRKMFVAMAKDIRVILIKLAD 144
Query: 217 RLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 276
RLHNMRT+ LPP K R A ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 145 RLHNMRTLKHLPPEKQRIKANETLEIFAPLAHRLGISTIKWELEDTALRYLNPQQYYRI- 203
Query: 277 ADLASMWSPRN-RVGYSRRITTIVS 300
+ M R+ RV Y + VS
Sbjct: 204 --VQLMKQKRDQRVSYIDEVIQEVS 226
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 83/125 (66%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
+E +S R K LYSI+ KM +++ +++YD A+RV+V +I+ CY++L
Sbjct: 233 NIEAEISGRPKHLYSIYQKMVKQNKQFNEIYDLLAVRVLVN---------SIKDCYAVLG 283
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
I+H W P+ G F DYI PK + YQSLHT V GP G LEVQIRT++MHE AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKQNLYQSLHTTVIGPKGDPLEVQIRTKEMHEIAEYGIAAH 343
Query: 514 WLYKE 518
W YKE
Sbjct: 344 WAYKE 348
>gi|333979510|ref|YP_004517455.1| (p)ppGpp synthetase I SpoT/RelA [Desulfotomaculum kuznetsovii DSM
6115]
gi|333822991|gb|AEG15654.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfotomaculum kuznetsovii DSM
6115]
Length = 724
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 82/128 (64%), Gaps = 9/128 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ + R K LYSI++KM ++ + ++YD A+RV+V +I+ CY++L
Sbjct: 235 GIFADIQGRPKHLYSIYTKMEKQQKDLSEIYDVMAVRVIV---------ESIRDCYAVLG 285
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
VH LW PI G F DYI PK + YQSLHT V GP G LE+QIRT++MH AE+G+AAH
Sbjct: 286 TVHTLWKPIPGRFKDYIAMPKSNMYQSLHTTVVGPQGEPLEIQIRTREMHRTAEYGIAAH 345
Query: 514 WLYKETGN 521
W YKE G
Sbjct: 346 WRYKEGGK 353
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/181 (40%), Positives = 109/181 (60%), Gaps = 14/181 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ KA FA++AH Q R +G+P++TH + ILA L + + T+VAG+LHDVV+D
Sbjct: 30 LSKAYRFAEQAHRDQKRISGEPFITHPVAVAHILANL-----QMDLQTLVAGLLHDVVED 84
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRR-HRRINVNQGTLGHEE--------L 214
+L I+ FGDEVA LV GV++LS + + H+ N+ + L + L
Sbjct: 85 TGVTLEEIKTAFGDEVALLVDGVTKLSRLEYRSKEEHQAENLRKMFLAMAQDIRVILIKL 144
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHN+RT+ K + +A+ETL I+ LA RLG++ LK ELEDL F L+P+ + +
Sbjct: 145 ADRLHNLRTLKYHTETKQKEIARETLEIYAPLAHRLGIYHLKWELEDLSFRYLEPEKYYE 204
Query: 275 M 275
+
Sbjct: 205 L 205
Score = 43.9 bits (102), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 13/103 (12%)
Query: 715 INNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRS 774
++ K+ LR +L W+ +LR +S K + DSV V P G+++ L +
Sbjct: 358 LDQKLAWLRQILEWQRELRDAREFMESL---KIDLFADSV------FVFTPKGDVIELPA 408
Query: 775 GSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 813
GS D A +V E G + VNG++V + +LK+GDIVE+
Sbjct: 409 GSVPIDFAYRVHTEVGHRCVGARVNGRIVPLDYQLKNGDIVEI 451
>gi|254672770|emb|CBA06820.1| GTP pyrophosphokinase [Neisseria meningitidis alpha275]
Length = 737
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 519 TG 520
G
Sbjct: 369 GG 370
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 44/65 (67%), Gaps = 3/65 (4%)
Query: 213 ELADRLHNMRTIYALP--PAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
+LA R ++ + +P P K RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+
Sbjct: 160 KLAMRTRTLQFLSNVPDNPEK-RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPE 218
Query: 271 IFRKM 275
+R++
Sbjct: 219 KYREI 223
>gi|259909467|ref|YP_002649823.1| GDP/GTP pyrophosphokinase [Erwinia pyrifoliae Ep1/96]
gi|224965089|emb|CAX56621.1| GTP pyrophosphokinase [Erwinia pyrifoliae Ep1/96]
Length = 744
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 84/127 (66%), Gaps = 9/127 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K +YSI+ KM++K + +++D RA+R+V +Q CY L
Sbjct: 244 GVKAEVYGRPKHIYSIWRKMQKKSLAFDELFDVRAVRIV---------AERLQDCYGALG 294
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH L+ + EFDDY+ NPKP+GYQS+HT V GP G +E+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTLYRHLPNEFDDYVANPKPNGYQSIHTVVLGPKGKTVEIQIRTRQMHEDAELGVAAH 354
Query: 514 WLYKETG 520
W YKE G
Sbjct: 355 WKYKEGG 361
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 15/141 (10%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI------- 202
+T+ A +L + D S +E +FG + LV GV + I QL H
Sbjct: 74 ETLSAALLFPLADAGVVSEEVLEAQFGQSIVSLVHGVRDMDAIRQLKATHNDSMASEQVD 133
Query: 203 NVNQGTLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 254
NV + L E LA+R+ ++R + P + A+E I+ LA+RLG+
Sbjct: 134 NVRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQ 193
Query: 255 LKAELEDLCFAVLQPQIFRKM 275
LK ELED CF L P+ ++++
Sbjct: 194 LKWELEDFCFRYLHPEEYKRI 214
>gi|161870582|ref|YP_001599754.1| GTP pyrophosphokinase [Neisseria meningitidis 053442]
gi|161596135|gb|ABX73795.1| GTP pyrophosphokinase [Neisseria meningitidis 053442]
Length = 773
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 294 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 344
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 345 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 404
Query: 519 TG 520
G
Sbjct: 405 GG 406
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 213 ELADRLHNMRTIYALPPA-KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
+LA R ++ + P + + RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+
Sbjct: 196 KLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEK 255
Query: 272 FRKM 275
+R++
Sbjct: 256 YREI 259
>gi|339635160|ref|YP_004726801.1| GTP pyrophosphokinase [Weissella koreensis KACC 15510]
gi|338854956|gb|AEJ24122.1| GTP pyrophosphokinase [Weissella koreensis KACC 15510]
Length = 744
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 110/202 (54%), Gaps = 18/202 (8%)
Query: 384 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 443
E+ ++ + V++ R K +YSI+ KM++K ++YD A+RV+V
Sbjct: 224 EIKVTIDNLKLKNVSVYGRPKHIYSIYRKMQKKQKAFEEIYDLLAIRVIVN--------- 274
Query: 444 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 503
+I CY++L +H W P+ G F DYI PK +GYQSLHT+V GP+G LE+QIRT MH
Sbjct: 275 SIGDCYAVLGAIHSHWTPMPGRFKDYIALPKANGYQSLHTSVIGPEGRPLEIQIRTHDMH 334
Query: 504 EYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSL------SKDTDDH-NPLDTDLFQ 556
E AE G+AAHW YKE + + D+ + S+ SKD+ D + +DLF
Sbjct: 335 EVAEFGVAAHWAYKEGKFDGADVQNSDQQQLNMIQSILELQTESKDSGDFMETVKSDLFT 394
Query: 557 K--YSSLKMGHPVIRVEGSNLL 576
Y+ +G V +G+ L
Sbjct: 395 DRVYAFTPLGDVVELTQGAGPL 416
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 105/188 (55%), Gaps = 20/188 (10%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V +A +A H Q R++G+PY+ H I ILA L DTV+AG LHDVV+D
Sbjct: 28 VDRAFEYANGLHKEQRRRSGEPYIIHPIQVAGILADLHMDP-----DTVIAGYLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRRINVNQGTLGHE----- 212
L I + FG++VA +V GVS++S I +L HR++ + + H+
Sbjct: 83 TPAELEDIVDRFGEDVAAIVDGVSKISKIEYKSDSERLAENHRKLLL---AMSHDIRVIF 139
Query: 213 -ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
+LADRLHN+RT+ AL PAK + +A ETL I+ LA RLG+ +K ELED L +
Sbjct: 140 VKLADRLHNIRTLDALNPAKQKRIAGETLEIYAPLADRLGIMTIKWELEDTSLRYLDYEA 199
Query: 272 FRKMRADL 279
+ + D+
Sbjct: 200 YHAIAQDM 207
>gi|46143480|ref|ZP_00135156.2| COG0317: Guanosine polyphosphate pyrophosphohydrolases/synthetases
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|126209287|ref|YP_001054512.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
(ppGpp)ase) [Actinobacillus pleuropneumoniae serovar 5b
str. L20]
gi|303251149|ref|ZP_07337333.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|307253509|ref|ZP_07535379.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|126098079|gb|ABN74907.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
(ppGpp)ase) [Actinobacillus pleuropneumoniae serovar 5b
str. L20]
gi|302650000|gb|EFL80172.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|306859010|gb|EFM91053.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 6 str. Femo]
Length = 568
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 110/194 (56%), Gaps = 15/194 (7%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E V++A A+ AH GQ R +G+PY+TH + I+A + K +
Sbjct: 11 IQGYLPADKIELVKRAFVIARDAHEGQTRSSGEPYITHPVAVASIIAEM-----KLDHEA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLG 210
V+A +LHDV++D + + EFG VA++V GVS+L + R+ ++ N + L
Sbjct: 66 VMAALLHDVIEDTPYTEEQLAAEFGSSVAEIVQGVSKLDKLKFRTRQEAQVENFRKMILA 125
Query: 211 HEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 262
+ LADR HNMRT+ AL P K R +A+ETL I+ LA RLG+ LK ELEDL
Sbjct: 126 MTKDIRVVLIKLADRTHNMRTLGALRPDKRRRIAKETLEIYSPLAHRLGIEHLKNELEDL 185
Query: 263 CFAVLQPQIFRKMR 276
CF + P +R +R
Sbjct: 186 CFQAMHPHRYRVLR 199
Score = 102 bits (254), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 73/125 (58%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K LYS++ KMR++D H + D A RVVVG+ + CY L
Sbjct: 228 GIQGRVYGREKHLYSLYEKMRQRDQHFHSILDIYAFRVVVGN---------VDHCYRALG 278
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+H L+ P + DYI PK +GYQSLHT++ G G +EVQIRT+ M AE G+AAH
Sbjct: 279 QMHALYKPRPYKIRDYIAVPKTNGYQSLHTSMIGHKGVPIEVQIRTEDMDLMAELGVAAH 338
Query: 514 WLYKE 518
W Y E
Sbjct: 339 WRYTE 343
>gi|121635369|ref|YP_975614.1| GTP pyrophosphokinase [Neisseria meningitidis FAM18]
gi|385855749|ref|YP_005902262.1| GTP diphosphokinase [Neisseria meningitidis M01-240355]
gi|416179061|ref|ZP_11610923.1| GTP diphosphokinase [Neisseria meningitidis M6190]
gi|416190680|ref|ZP_11615861.1| GTP diphosphokinase [Neisseria meningitidis ES14902]
gi|433493121|ref|ZP_20450208.1| relA/SpoT family protein [Neisseria meningitidis NM586]
gi|433495235|ref|ZP_20452298.1| relA/SpoT family protein [Neisseria meningitidis NM762]
gi|433503372|ref|ZP_20460330.1| relA/SpoT family protein [Neisseria meningitidis NM126]
gi|120867075|emb|CAM10840.1| GTP pyrophosphokinase [Neisseria meningitidis FAM18]
gi|325131721|gb|EGC54423.1| GTP diphosphokinase [Neisseria meningitidis M6190]
gi|325138860|gb|EGC61411.1| GTP diphosphokinase [Neisseria meningitidis ES14902]
gi|325204690|gb|ADZ00144.1| GTP diphosphokinase [Neisseria meningitidis M01-240355]
gi|432226912|gb|ELK82632.1| relA/SpoT family protein [Neisseria meningitidis NM586]
gi|432228767|gb|ELK84463.1| relA/SpoT family protein [Neisseria meningitidis NM762]
gi|432239393|gb|ELK94946.1| relA/SpoT family protein [Neisseria meningitidis NM126]
Length = 737
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 519 TG 520
G
Sbjct: 369 GG 370
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 44/65 (67%), Gaps = 3/65 (4%)
Query: 213 ELADRLHNMRTIYALP--PAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
+LA R ++ + +P P K RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+
Sbjct: 160 KLAMRTRTLQFLSNVPDNPEK-RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPE 218
Query: 271 IFRKM 275
+R++
Sbjct: 219 KYREI 223
>gi|433497736|ref|ZP_20454761.1| relA/SpoT family protein [Neisseria meningitidis M7089]
gi|433499502|ref|ZP_20456507.1| relA/SpoT family protein [Neisseria meningitidis M7124]
gi|432231675|gb|ELK87334.1| relA/SpoT family protein [Neisseria meningitidis M7089]
gi|432233068|gb|ELK88702.1| relA/SpoT family protein [Neisseria meningitidis M7124]
Length = 737
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 519 TG 520
G
Sbjct: 369 GG 370
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 44/65 (67%), Gaps = 3/65 (4%)
Query: 213 ELADRLHNMRTIYALP--PAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
+LA R ++ + +P P K RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+
Sbjct: 160 KLAMRTRTLQFLSNVPDNPEK-RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPE 218
Query: 271 IFRKM 275
+R++
Sbjct: 219 KYREI 223
>gi|421561765|ref|ZP_16007603.1| relA/SpoT family protein [Neisseria meningitidis NM2657]
gi|402336792|gb|EJU72050.1| relA/SpoT family protein [Neisseria meningitidis NM2657]
Length = 737
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 519 TG 520
G
Sbjct: 369 GG 370
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 213 ELADRLHNMRTIYALPPA-KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
+LA R ++ + P + + RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+
Sbjct: 160 KLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQKPEK 219
Query: 272 FRKM 275
+R++
Sbjct: 220 YREI 223
>gi|365540214|ref|ZP_09365389.1| GTP pyrophosphokinase [Vibrio ordalii ATCC 33509]
Length = 740
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 108/387 (27%), Positives = 180/387 (46%), Gaps = 93/387 (24%)
Query: 136 ILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL 195
++ +LI S RA T+VA L +V +EE +G + KL+ GV ++ + QL
Sbjct: 61 MIEILITLSMDRA--TLVAAQLFPIVSSGLFDREVLEETYGKGIVKLIDGVEEMAALGQL 118
Query: 196 LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWA 254
NV TL E ++++ N+R + A+ + + LA R+ L
Sbjct: 119 -------NV---TLQGSEASEQVDNVRRMLL-------AMVDDFRCVVIKLAERICNLRE 161
Query: 255 LKAELEDLCFAVLQPQIFRKMRA-DLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDD 312
+K E P R++ A + A++++P NR+G + I +D
Sbjct: 162 VKDE----------PDEIRRVAAKECANIYAPLANRLGIGQLKWEI------------ED 199
Query: 313 ESFTTFDEHVLSMKDLLEAVVPFDILSDRR-KRTKFLHDLAKSSEAQKKAKVVQDAGIAL 371
+F D + + LS+RR R +++HD + A+ K
Sbjct: 200 YAFR------YQQSDTYKQIAKQ--LSERRIVREQYIHDFVEDLRAEMK----------- 240
Query: 372 TSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRV 431
+ + +S R K +YSI+ KM++K + +++D RA+R+
Sbjct: 241 --------------------LSHINAEVSGRPKHIYSIWRKMQKKGLAFDELFDVRAVRI 280
Query: 432 VVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGS 491
+ +Q CY+ L +VH + + EFDDY+ NPKP+GYQS+HT + GP+G
Sbjct: 281 I---------ADQLQDCYAALGVVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGK 331
Query: 492 ALEVQIRTQKMHEYAEHGLAAHWLYKE 518
+E+QIRT++MHE +E G+AAHW YKE
Sbjct: 332 TIEIQIRTKQMHEESELGVAAHWKYKE 358
>gi|385850732|ref|YP_005897247.1| GTP diphosphokinase [Neisseria meningitidis M04-240196]
gi|325205555|gb|ADZ01008.1| GTP diphosphokinase [Neisseria meningitidis M04-240196]
Length = 737
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 519 TG 520
G
Sbjct: 369 GG 370
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 213 ELADRLHNMRTIYALPPA-KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
+LA R ++ + P + + RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+
Sbjct: 160 KLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQKPEK 219
Query: 272 FRKM 275
+R++
Sbjct: 220 YREI 223
>gi|385787354|ref|YP_005818463.1| GDP/GTP pyrophosphokinase [Erwinia sp. Ejp617]
gi|310766626|gb|ADP11576.1| GDP/GTP pyrophosphokinase [Erwinia sp. Ejp617]
Length = 744
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 84/127 (66%), Gaps = 9/127 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K +YSI+ KM++K + +++D RA+R+V +Q CY L
Sbjct: 244 GVKAEVYGRPKHIYSIWRKMQKKSLAFDELFDVRAVRIV---------AERLQDCYGALG 294
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH L+ + EFDDY+ NPKP+GYQS+HT V GP G +E+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTLYRHLPNEFDDYVANPKPNGYQSIHTVVLGPKGKTVEIQIRTRQMHEDAELGVAAH 354
Query: 514 WLYKETG 520
W YKE G
Sbjct: 355 WKYKEGG 361
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 15/141 (10%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI------- 202
+T+ A +L + D S +E +FG + LV GV + I QL H
Sbjct: 74 ETLSAALLFPLADAGVVSEEVLEAQFGQSIVSLVHGVRDMDAIRQLKATHNDSMASEQVD 133
Query: 203 NVNQGTLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 254
NV + L E LA+R+ ++R + P + A+E I+ LA+RLG+
Sbjct: 134 NVRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQ 193
Query: 255 LKAELEDLCFAVLQPQIFRKM 275
LK ELED CF L P+ ++++
Sbjct: 194 LKWELEDFCFRYLHPEEYKRI 214
>gi|218768747|ref|YP_002343259.1| GTP pyrophosphokinase [Neisseria meningitidis Z2491]
gi|121052755|emb|CAM09099.1| GTP pyrophosphokinase [Neisseria meningitidis Z2491]
Length = 769
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 290 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 340
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 341 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 400
Query: 519 TG 520
G
Sbjct: 401 GG 402
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 213 ELADRLHNMRTIYALPPA-KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
+LA R ++ + P + + RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+
Sbjct: 192 KLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEK 251
Query: 272 FRKM 275
+R++
Sbjct: 252 YREI 255
>gi|355576488|ref|ZP_09045743.1| hypothetical protein HMPREF1008_01720 [Olsenella sp. oral taxon 809
str. F0356]
gi|354816725|gb|EHF01240.1| hypothetical protein HMPREF1008_01720 [Olsenella sp. oral taxon 809
str. F0356]
Length = 777
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 107/185 (57%), Gaps = 18/185 (9%)
Query: 348 LHDLA----KSSEAQKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 402
L DLA + +E ++ A++VQD+ A L+ EL + + G ++T R
Sbjct: 199 LEDLAFFYLEPTEYERVARMVQDSRAQREQDTAEAIRILDGEL--ARVGLAGYQIT--GR 254
Query: 403 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 462
K L+SI+ KM RK +YD ALRV+ P++ CYS+L VH LW P+
Sbjct: 255 PKHLWSIYQKMTRKGKEFSDIYDLIALRVLT---------PSVGDCYSVLGAVHSLWHPL 305
Query: 463 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 522
G F DY+ PKP+GY+SLHT V G D +E+QIRT +MH+ AE+G+AAHWLYK++G
Sbjct: 306 PGRFKDYVAMPKPNGYRSLHTTVIGSDARPIEIQIRTYEMHDQAEYGIAAHWLYKKSGGS 365
Query: 523 LQSIS 527
+S
Sbjct: 366 RGQMS 370
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 105/182 (57%), Gaps = 13/182 (7%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
+V++A +FA H Q R++G+PY+ H + ILA + G D++ A +LHD V+
Sbjct: 38 RVKEAYSFAAEFHADQRRRSGEPYINHPVEVALILAKDLRMDG----DSICAALLHDTVE 93
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYIN-QLLRRHRRINVNQGTLGHEE-------- 213
D +L I FG+ VA+LV GV++L+ I + + +N+ + L +
Sbjct: 94 DTPATLADISVRFGETVAELVDGVTKLTSIQVASMDEKQALNLRKMFLAMSKDIRVVIIK 153
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
LADRLHNMRT+ AL P + A+ET+ ++ LA RLG+ ++K ELEDL F L+P +
Sbjct: 154 LADRLHNMRTLAALKPDRRAFKARETMDVYAPLADRLGISSVKWELEDLAFFYLEPTEYE 213
Query: 274 KM 275
++
Sbjct: 214 RV 215
>gi|421568219|ref|ZP_16013946.1| GTP-pyrophosphokinase [Neisseria meningitidis NM3001]
gi|402342338|gb|EJU77506.1| GTP-pyrophosphokinase [Neisseria meningitidis NM3001]
Length = 737
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 519 TG 520
G
Sbjct: 369 GG 370
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 44/65 (67%), Gaps = 3/65 (4%)
Query: 213 ELADRLHNMRTIYALP--PAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
+LA R ++ + +P P K RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+
Sbjct: 160 KLAMRTRTLQFLSNVPDNPEK-RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPE 218
Query: 271 IFRKM 275
+R++
Sbjct: 219 KYREI 223
>gi|416184299|ref|ZP_11613025.1| GTP diphosphokinase [Neisseria meningitidis M13399]
gi|416212198|ref|ZP_11621803.1| GTP diphosphokinase [Neisseria meningitidis M01-240013]
gi|325133621|gb|EGC56279.1| GTP diphosphokinase [Neisseria meningitidis M13399]
gi|325145077|gb|EGC67360.1| GTP diphosphokinase [Neisseria meningitidis M01-240013]
Length = 737
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 519 TG 520
G
Sbjct: 369 GG 370
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 213 ELADRLHNMRTIYALPPA-KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
+LA R ++ + P + + RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+
Sbjct: 160 KLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQKPEK 219
Query: 272 FRKM 275
+R++
Sbjct: 220 YREI 223
>gi|317153777|ref|YP_004121825.1| RelA/SpoT family protein [Desulfovibrio aespoeensis Aspo-2]
gi|316944028|gb|ADU63079.1| RelA/SpoT family protein [Desulfovibrio aespoeensis Aspo-2]
Length = 726
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/181 (39%), Positives = 109/181 (60%), Gaps = 14/181 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+Q+A F+ +AH G R++G+PY++H ++ +LA + TV AG+LHD V+D
Sbjct: 23 IQRAYVFSAQAHDGVVRRSGEPYISHPMNVAYLLAEMQLDEA-----TVAAGLLHDTVED 77
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLGHEE--------L 214
S+ IEE FG +VA +V GV+++S ++ + ++ N+ + L E L
Sbjct: 78 TQASVDEIEEFFGSDVADIVDGVTKISQMDFESKAVQQAENIRKLILAMAEDIRVLMVKL 137
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHNMRT+ + P K R +AQET I+ LA+RLGL +K ELEDLC L+P +F +
Sbjct: 138 ADRLHNMRTLEFMKPVKQRLIAQETQDIYAPLANRLGLHRVKTELEDLCLRYLKPDVFDQ 197
Query: 275 M 275
+
Sbjct: 198 L 198
Score = 119 bits (297), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 87/144 (60%), Gaps = 9/144 (6%)
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K L+SI KM ++ + ++YD A R+++ +++ CY++L ++H +W P
Sbjct: 236 RTKHLHSIHVKMEQQGLTFDEIYDLIAFRIIL---------ESVKDCYAVLGLIHSIWRP 286
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ G F DYI PK + YQSLH+ V GPDG +EVQIRT++M+ AE+G+AAHW YKE G
Sbjct: 287 VPGRFKDYISIPKANMYQSLHSTVIGPDGERIEVQIRTEEMNRIAEYGVAAHWQYKEVGK 346
Query: 522 KLQSISSMDESDIEASSSLSKDTD 545
+ S D D E + L + D
Sbjct: 347 GSKRARSADTRDAERYTWLRQIMD 370
>gi|165977262|ref|YP_001652855.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 3 str. JL03]
gi|307251430|ref|ZP_07533344.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 4 str. M62]
gi|307257924|ref|ZP_07539678.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 10 str. D13039]
gi|165877363|gb|ABY70411.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 3 str. JL03]
gi|306856514|gb|EFM88656.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 4 str. M62]
gi|306863571|gb|EFM95500.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 10 str. D13039]
Length = 568
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 110/194 (56%), Gaps = 15/194 (7%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E V++A A+ AH GQ R +G+PY+TH + I+A + K +
Sbjct: 11 IQGYLPADKIELVKRAFVIARDAHEGQTRSSGEPYITHPVAVASIIAEM-----KLDHEA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLG 210
V+A +LHDV++D + + EFG VA++V GVS+L + R+ ++ N + L
Sbjct: 66 VMAALLHDVIEDTPYTEEQLAAEFGSSVAEIVQGVSKLDKLKFRTRQEAQVENFRKMILA 125
Query: 211 HEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 262
+ LADR HNMRT+ AL P K R +A+ETL I+ LA RLG+ LK ELEDL
Sbjct: 126 MTKDIRVVLIKLADRTHNMRTLGALRPDKRRRIAKETLEIYSPLAHRLGIEHLKNELEDL 185
Query: 263 CFAVLQPQIFRKMR 276
CF + P +R +R
Sbjct: 186 CFQAMHPHRYRVLR 199
Score = 102 bits (254), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 73/125 (58%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K LYS++ KMR++D H + D A RVVVG+ + CY L
Sbjct: 228 GIQGRVYGREKHLYSLYEKMRQRDQHFHSILDIYAFRVVVGN---------VDHCYRALG 278
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+H L+ P + DYI PK +GYQSLHT++ G G +EVQIRT+ M AE G+AAH
Sbjct: 279 QMHALYKPRPYKIRDYIAVPKTNGYQSLHTSMIGHKGVPIEVQIRTEDMDLMAELGVAAH 338
Query: 514 WLYKE 518
W Y E
Sbjct: 339 WRYTE 343
>gi|420161155|ref|ZP_14667926.1| GTP diphosphokinase [Weissella koreensis KCTC 3621]
gi|394745905|gb|EJF34723.1| GTP diphosphokinase [Weissella koreensis KCTC 3621]
Length = 744
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 110/202 (54%), Gaps = 18/202 (8%)
Query: 384 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 443
E+ ++ + V++ R K +YSI+ KM++K ++YD A+RV+V
Sbjct: 224 EIKVTIDNLKLKNVSVYGRPKHIYSIYRKMQKKQKAFEEIYDLLAIRVIVN--------- 274
Query: 444 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 503
+I CY++L +H W P+ G F DYI PK +GYQSLHT+V GP+G LE+QIRT MH
Sbjct: 275 SIGDCYAVLGAIHSHWTPMPGRFKDYIALPKANGYQSLHTSVIGPEGRPLEIQIRTHDMH 334
Query: 504 EYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSL------SKDTDDH-NPLDTDLFQ 556
E AE G+AAHW YKE + + D+ + S+ SKD+ D + +DLF
Sbjct: 335 EVAEFGVAAHWAYKEGKFDGADVQNSDQQQLNMIQSILELQTESKDSGDFMETVKSDLFT 394
Query: 557 K--YSSLKMGHPVIRVEGSNLL 576
Y+ +G V +G+ L
Sbjct: 395 DRVYAFTPLGDVVELTQGAGPL 416
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 105/188 (55%), Gaps = 20/188 (10%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V +A +A H Q R++G+PY+ H I ILA L DTV+AG LHDVV+D
Sbjct: 28 VDRAFEYANGLHKEQRRRSGEPYIIHPIQVAGILADLYMDP-----DTVIAGYLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRRINVNQGTLGHE----- 212
L I E FG++VA +V GVS++S I +L HR++ + + H+
Sbjct: 83 TPAELEDIVERFGEDVAAIVDGVSKISKIEYKSDSERLAENHRKLLL---AMSHDIRVIF 139
Query: 213 -ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
+LADRLHN+RT+ AL PAK + +A ETL I+ LA RLG+ +K ELED L +
Sbjct: 140 VKLADRLHNIRTLDALNPAKQKRIAGETLEIYAPLADRLGIMTIKWELEDTSLRYLDYEA 199
Query: 272 FRKMRADL 279
+ + D+
Sbjct: 200 YHAIAQDM 207
>gi|357158631|ref|XP_003578190.1| PREDICTED: GTP pyrophosphokinase-like [Brachypodium distachyon]
Length = 708
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 117/200 (58%), Gaps = 19/200 (9%)
Query: 98 IFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGIL 157
IF++E V +A A++AHHGQ R +GDP+L HC+ T +LA + +S V AG+L
Sbjct: 202 IFHEELVVRAFFEAEKAHHGQTRASGDPFLQHCVETAVLLAKIGANS-----TVVSAGLL 256
Query: 158 HDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHR---------RINVNQGT 208
HD +DD+ I FG VA LV GVS+LS++++L R + R++
Sbjct: 257 HDTIDDSFVDYDHIFHMFGAGVADLVEGVSKLSHLSKLARDNNTASRTAEADRLHTMLLA 316
Query: 209 LGHE-----ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLC 263
+ +LADR+HNM+T+ ALP K + A+ET+ I+ LA+RLG+ + K +LE+LC
Sbjct: 317 MADARAVLIKLADRVHNMKTLEALPLVKQQRFAKETMEIFVPLANRLGIASWKDQLENLC 376
Query: 264 FAVLQPQIFRKMRADLASMW 283
F L P+ + ++ + L +
Sbjct: 377 FKHLNPEEYTELSSKLTETF 396
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/121 (47%), Positives = 78/121 (64%), Gaps = 9/121 (7%)
Query: 398 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 457
LS R K+LYS++SKM +K++ + +V+D LR+VV DK + CY L++VH+
Sbjct: 421 NLSGRHKNLYSVYSKMLKKNLTMDEVHDIHGLRLVV-DKE--------EDCYQALEVVHK 471
Query: 458 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 517
LW + G F DYI PK +GY+SLHT V EVQIRT++MH AE+G AAHW YK
Sbjct: 472 LWPQVTGRFKDYISRPKLNGYRSLHTVVLSEGVHPFEVQIRTKEMHLQAEYGFAAHWRYK 531
Query: 518 E 518
E
Sbjct: 532 E 532
>gi|307262318|ref|ZP_07543966.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 12 str. 1096]
gi|306867981|gb|EFM99809.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 12 str. 1096]
Length = 568
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 110/194 (56%), Gaps = 15/194 (7%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E V++A A+ AH GQ R +G+PY+TH + I+A + K +
Sbjct: 11 IQGYLPADKIELVKRAFVIARDAHEGQTRSSGEPYITHPVAVASIIAEM-----KLDHEA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLG 210
V+A +LHDV++D + + EFG VA++V GVS+L + R+ ++ N + L
Sbjct: 66 VMAALLHDVIEDTPYTEEQLAAEFGSSVAEIVQGVSKLDKLKFRTRQEAQVENFRKMILA 125
Query: 211 HEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 262
+ LADR HNMRT+ AL P K R +A+ETL I+ LA RLG+ LK ELEDL
Sbjct: 126 MTKDIRVVLIKLADRTHNMRTLGALRPDKRRRIAKETLEIYSPLAHRLGIEHLKNELEDL 185
Query: 263 CFAVLQPQIFRKMR 276
CF + P +R +R
Sbjct: 186 CFQAMHPHRYRVLR 199
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 73/125 (58%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K LYS++ KMR++D H + D A RVVVG+ + CY L
Sbjct: 228 GIKGRVYGREKHLYSLYEKMRQRDQHFHSILDIYAFRVVVGN---------VDHCYRALG 278
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+H L+ P + DYI PK +GYQSLHT++ G G +EVQIRT+ M AE G+AAH
Sbjct: 279 QMHALYKPRPYKIRDYIAVPKTNGYQSLHTSMIGHKGVPIEVQIRTEDMDLMAELGVAAH 338
Query: 514 WLYKE 518
W Y E
Sbjct: 339 WRYTE 343
>gi|319638672|ref|ZP_07993432.1| GTP pyrophosphokinase [Neisseria mucosa C102]
gi|317400056|gb|EFV80717.1| GTP pyrophosphokinase [Neisseria mucosa C102]
Length = 737
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLTFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 519 TG 520
G
Sbjct: 369 GG 370
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 89/206 (43%), Gaps = 31/206 (15%)
Query: 93 VTGYPIFNDEQVQKAIAFAKRAHHGQFRKT-GDPYLTHCIHTGRILAML--IPSSGKRAV 149
V P + +Q A AK + T G+P + H + + +I++ L +P
Sbjct: 26 VAALPDPDKNLIQTAFDLAKEHYPADALTTYGEPLMEHFLGSMQIVSELDLLP------- 78
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D V A IL D+ + E V +LV GV + + Q R +
Sbjct: 79 DAVAATILSDIGKYVPTWQELVAERCNSTVCELVKGVDEVQKLTQFARVDSLATPEERAQ 138
Query: 210 GHE------------------ELADRLHNMRTIYALP--PAKARAVAQETLLIWCSLASR 249
E +LA R ++ + +P P K RAVA+ETL I+ LA+R
Sbjct: 139 QAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNVPDNPEK-RAVAKETLDIFAPLANR 197
Query: 250 LGLWALKAELEDLCFAVLQPQIFRKM 275
LG+W LK +LEDL F +P+ +R++
Sbjct: 198 LGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|268601819|ref|ZP_06135986.1| GTP pyrophosphokinase [Neisseria gonorrhoeae PID18]
gi|268585950|gb|EEZ50626.1| GTP pyrophosphokinase [Neisseria gonorrhoeae PID18]
Length = 737
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 519 TG 520
G
Sbjct: 369 GG 370
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 213 ELADRLHNMRTIYALPPA-KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
+LA R ++ + P + + RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+
Sbjct: 160 KLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEK 219
Query: 272 FRKM 275
+R++
Sbjct: 220 YREI 223
>gi|385329001|ref|YP_005883304.1| GTP pyrophosphokinase [Neisseria meningitidis alpha710]
gi|308389853|gb|ADO32173.1| GTP pyrophosphokinase [Neisseria meningitidis alpha710]
Length = 769
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 290 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 340
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 341 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 400
Query: 519 TG 520
G
Sbjct: 401 GG 402
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 213 ELADRLHNMRTIYALPPA-KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
+LA R ++ + P + + RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+
Sbjct: 192 KLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEK 251
Query: 272 FRKM 275
+R++
Sbjct: 252 YREI 255
>gi|268597393|ref|ZP_06131560.1| GTP pyrophosphokinase [Neisseria gonorrhoeae FA19]
gi|268682609|ref|ZP_06149471.1| GTP pyrophosphokinase [Neisseria gonorrhoeae PID332]
gi|268551181|gb|EEZ46200.1| GTP pyrophosphokinase [Neisseria gonorrhoeae FA19]
gi|268622893|gb|EEZ55293.1| GTP pyrophosphokinase [Neisseria gonorrhoeae PID332]
Length = 737
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 519 TG 520
G
Sbjct: 369 GG 370
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 213 ELADRLHNMRTIYALPPA-KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
+LA R ++ + P + + RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+
Sbjct: 160 KLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEK 219
Query: 272 FRKM 275
+R++
Sbjct: 220 YREI 223
>gi|257064877|ref|YP_003144549.1| (p)ppGpp synthetase, RelA/SpoT family [Slackia heliotrinireducens
DSM 20476]
gi|256792530|gb|ACV23200.1| (p)ppGpp synthetase, RelA/SpoT family [Slackia heliotrinireducens
DSM 20476]
Length = 789
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 81/123 (65%), Gaps = 9/123 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K LYSI KM ++ G ++YD A+R++V +++ CYS+L VH L
Sbjct: 279 IAGRPKHLYSINQKMINREKGFSEIYDLIAVRIIV---------ESVKDCYSVLGSVHSL 329
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W P+ G F DYI PK +GYQSLHT V GP G LEVQIRT++MH +E+G+AAHW YKE
Sbjct: 330 WHPMPGRFKDYIAMPKANGYQSLHTTVIGPAGRPLEVQIRTEEMHRLSEYGVAAHWRYKE 389
Query: 519 TGN 521
GN
Sbjct: 390 KGN 392
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 104/181 (57%), Gaps = 14/181 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA FA+ AH GQ RK+G+P++ H + ILA L + VDT+ A +LHD V+D
Sbjct: 69 LEKAYRFAESAHKGQKRKSGEPFIAHPVEVALILADL-----RMDVDTLCAALLHDTVED 123
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYIN-QLLRRHRRINVNQG--TLGHE------EL 214
+ + + F + VA LV GV++++ + + L + + + + H+ +L
Sbjct: 124 TDVTHKDLLDTFNESVANLVEGVTKITQVEVESLTDEQAATIRKMFVAMSHDIRVIVIKL 183
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHNMRT+ AL + A ETL I+ +A RLG+ ++K ELEDL F L P F++
Sbjct: 184 ADRLHNMRTLSALREDRRIFKAHETLEIYAPIAHRLGIGSIKWELEDLSFYYLDPARFKQ 243
Query: 275 M 275
+
Sbjct: 244 I 244
Score = 43.1 bits (100), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 15/107 (14%)
Query: 712 EASINNKVRLLRTMLRWEEQLR-SEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIM 770
+A+ + ++ LR M+ W+++ + S L + K+ + P EV + P GE+M
Sbjct: 396 DAAFDKQIAWLRQMVDWQDETQDSREFLSELKV---------DLAPSEVFVFT-PAGEVM 445
Query: 771 RLRSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 813
LR+GST D A V E G + VNG +V + +LK GD VE+
Sbjct: 446 SLRAGSTPIDFAYAVHTEVGNHCVGAKVNGDIVPLSYQLKMGDRVEI 492
>gi|110834484|ref|YP_693343.1| GTP pyrophosphokinase [Alcanivorax borkumensis SK2]
gi|110647595|emb|CAL17071.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) (ppGpp
synthetase I) [Alcanivorax borkumensis SK2]
Length = 746
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/134 (50%), Positives = 87/134 (64%), Gaps = 11/134 (8%)
Query: 392 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 451
I G EV + R K +YSI+ KM++K + +VYD RA+R++V P ++ CY+
Sbjct: 255 IGGAEV--NGRAKHIYSIWRKMQKKHLDFGEVYDVRAVRILV---------PEVRDCYAA 303
Query: 452 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 511
L +VH LW + EFDDYI +PK +GYQSLHTAV GP+ LEVQIRT MHE AE G+
Sbjct: 304 LGVVHSLWQHVPKEFDDYIASPKGNGYQSLHTAVVGPERKMLEVQIRTFDMHEEAELGVC 363
Query: 512 AHWLYKETGNKLQS 525
AHW YKE K +S
Sbjct: 364 AHWRYKEGAKKGKS 377
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 19/169 (11%)
Query: 125 PYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVA 184
PY C+ G +A ++ G + D + A IL+ V + +L +E+EFG EVA L+
Sbjct: 57 PYGKGCLDIGLEMAEVLVDLGADS-DVLPAAILYRAVREGQVTLLEVEKEFGPEVANLIE 115
Query: 185 GVSRLSYINQLLRRHRRINVNQ--GTLGHE----------------ELADRLHNMRTIYA 226
GV R++ I+ L R+ + Q G L + +LA+R +R +
Sbjct: 116 GVLRMAAISTSLNPTRKAVLGQQDGQLDNMRKMLVAMVDDVRVALVKLAERTVIIRAVKE 175
Query: 227 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
P + VAQE I+ LA RLG+ LK ELEDL F LQ ++K+
Sbjct: 176 STPERQSKVAQEIFDIYAPLAHRLGVGQLKWELEDLSFRYLQSGAYKKI 224
>gi|406941177|gb|EKD73736.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, partial
[uncultured bacterium]
Length = 392
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 112/195 (57%), Gaps = 14/195 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA F+K+AH Q R +G+PY+TH + ILA + + V+T+ A ILHDV++D
Sbjct: 23 IEKAYEFSKKAHGDQIRYSGEPYITHPVAVALILAEM-----RMDVETITAAILHDVIED 77
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------QLLRRHRRINVNQGTLGHEEL 214
+ +I +FG EV+ LV GV++L+ IN + R+ + + +L
Sbjct: 78 TSVNTTNIINQFGQEVSNLVDGVTKLTQINFENHAQAQAENFRKMIMAMASDIRIILVKL 137
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHNMRTI+ LP K R +A ETL I+ +A+RLG+ A + ELEDL F L P ++
Sbjct: 138 ADRLHNMRTIHGLPAKKRRRIALETLEIFAPIANRLGMHAFRVELEDLGFRALYPLRYKI 197
Query: 275 MRADLASMWSPRNRV 289
++ + R+ +
Sbjct: 198 LKTAVEKAGGNRHEI 212
Score = 122 bits (306), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 85/152 (55%), Gaps = 17/152 (11%)
Query: 397 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 456
V LSSR K LYSI+ KM K + ++ D R+ VG + CY +L ++H
Sbjct: 232 VNLSSRGKHLYSIYKKMHEKHLSFSEIMDVYGFRITVGK---------VDTCYRVLGLLH 282
Query: 457 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 516
L+ PI F DYI PK +GYQSLHT + GP G +E QIRT++MH+ AE+G+AAHWLY
Sbjct: 283 GLFKPISQRFKDYIAIPKANGYQSLHTILFGPYGVPIEAQIRTEEMHKVAENGIAAHWLY 342
Query: 517 KETGNKLQSISS--------MDESDIEASSSL 540
K L + S M E D A +SL
Sbjct: 343 KTEKKALHDVQSRANAWLQGMVEMDQSARNSL 374
>gi|345876146|ref|ZP_08827921.1| GTP diphosphokinase [Neisseria weaveri LMG 5135]
gi|417957898|ref|ZP_12600816.1| GTP diphosphokinase [Neisseria weaveri ATCC 51223]
gi|343967103|gb|EGV35353.1| GTP diphosphokinase [Neisseria weaveri LMG 5135]
gi|343967644|gb|EGV35887.1| GTP diphosphokinase [Neisseria weaveri ATCC 51223]
Length = 737
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 81/127 (63%), Gaps = 9/127 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ ++ R K +YSI+ KM +K + +YD RA+R++V + CY+ L
Sbjct: 253 GIHYDVAGRPKHIYSIYRKMVKKKLDFSGLYDIRAVRILVD---------TVPECYTTLG 303
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW PI GEFDDYI PK +GY+SLHT V GP+ +EVQIRT MH++ E G+AAH
Sbjct: 304 LVHSLWQPIPGEFDDYIAQPKGNGYKSLHTVVVGPEDKGVEVQIRTFDMHQFNEFGVAAH 363
Query: 514 WLYKETG 520
W YKE G
Sbjct: 364 WRYKEGG 370
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 213 ELADRLHNMRTIYALPPAK-ARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
+LA R M+ I LP ++ R +A+ETL I+ LA+RLG+W LK +LEDL F P+
Sbjct: 160 KLALRTRTMQFIGTLPDSEDKRLLAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQNPEK 219
Query: 272 FRKMRADL 279
++++ A L
Sbjct: 220 YKEIAALL 227
>gi|296314370|ref|ZP_06864311.1| GTP diphosphokinase [Neisseria polysaccharea ATCC 43768]
gi|296838927|gb|EFH22865.1| GTP diphosphokinase [Neisseria polysaccharea ATCC 43768]
Length = 737
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 519 TG 520
G
Sbjct: 369 GG 370
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 91/199 (45%), Gaps = 30/199 (15%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKT--GDPYLTHCIHTGRILAML--IPSSGKRAVDTVVAG 155
ND+++ A AH+ T G+P H + +++ L +P D V A
Sbjct: 32 NDKKLVLAARSLAEAHYPADAATPYGEPLPDHFLGAAQMVNELDLLP-------DAVAAT 84
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLR---------RHRRINVNQ 206
+L D+ + + E VA+LV GV + + R R R+ + +
Sbjct: 85 LLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERTRQAEIMR 144
Query: 207 GTLGHE---------ELADRLHNMRTIYALPPA-KARAVAQETLLIWCSLASRLGLWALK 256
L +LA R ++ + +P + + RAVA+ETL I+ LA+RLG+W LK
Sbjct: 145 KMLLAMVTDIRVVLIKLAMRTRTLQFLSNVPDSPEKRAVAKETLDIFAPLANRLGVWQLK 204
Query: 257 AELEDLCFAVLQPQIFRKM 275
+LEDL F +P+ +R++
Sbjct: 205 WQLEDLGFRHQEPEKYREI 223
>gi|387872445|ref|YP_005803827.1| GTP pyrophosphokinase [Erwinia pyrifoliae DSM 12163]
gi|283479540|emb|CAY75456.1| GTP pyrophosphokinase [Erwinia pyrifoliae DSM 12163]
Length = 749
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 84/127 (66%), Gaps = 9/127 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K +YSI+ KM++K + +++D RA+R+V +Q CY L
Sbjct: 249 GVKAEVYGRPKHIYSIWRKMQKKSLAFDELFDVRAVRIV---------AERLQDCYGALG 299
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH L+ + EFDDY+ NPKP+GYQS+HT V GP G +E+QIRT++MHE AE G+AAH
Sbjct: 300 IVHTLYRHLPNEFDDYVANPKPNGYQSIHTVVLGPKGKTVEIQIRTRQMHEDAELGVAAH 359
Query: 514 WLYKETG 520
W YKE G
Sbjct: 360 WKYKEGG 366
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 15/141 (10%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI------- 202
+T+ A +L + D S +E +FG + LV GV + I QL H
Sbjct: 79 ETLSAALLFPLADAGVVSEEVLEAQFGQSIVSLVHGVRDMDAIRQLKATHNDSMASEQVD 138
Query: 203 NVNQGTLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 254
NV + L E LA+R+ ++R + P + A+E I+ LA+RLG+
Sbjct: 139 NVRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQ 198
Query: 255 LKAELEDLCFAVLQPQIFRKM 275
LK ELED CF L P+ ++++
Sbjct: 199 LKWELEDFCFRYLHPEEYKRI 219
>gi|298369524|ref|ZP_06980841.1| GTP diphosphokinase [Neisseria sp. oral taxon 014 str. F0314]
gi|298282081|gb|EFI23569.1| GTP diphosphokinase [Neisseria sp. oral taxon 014 str. F0314]
Length = 737
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 519 TG 520
G
Sbjct: 369 GG 370
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 106/214 (49%), Gaps = 18/214 (8%)
Query: 77 PKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRK-TGDPYLTHCIHTGR 135
P LE G F DG + G P + +Q A+ A+R + + + +G+P L++ + +
Sbjct: 13 PDLENYRGWF--DGY-LAGLPDKDVRLLQTALKLAQRHYPAEAKTDSGEPLLSNLMGAAQ 69
Query: 136 IL--AMLIPSSGKRAVDTVVAGILHD---VVDDACESLGSIEEEFGDEVAKLV--AGVSR 188
++ L+P + + ++G D VV + C + + DEV KL A V
Sbjct: 70 MVNDMDLLPDAVAATLLAAISGYCPDWQQVVTEQCNATICELVKGVDEVQKLTHFARVDS 129
Query: 189 LSYINQ------LLRRHRRINVNQGTLGHEELADRLHNMRTIYALPPA-KARAVAQETLL 241
L+ + +R+ V + +LA R M+ + +P + + RAVA+ETL
Sbjct: 130 LATSEERAQQAETMRKMLLAMVTDIRVVLIKLAMRTRTMQFLSNIPDSPEKRAVAKETLD 189
Query: 242 IWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 275
I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 190 IFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|433465713|ref|ZP_20423186.1| relA/SpoT family protein [Neisseria meningitidis NM422]
gi|433491102|ref|ZP_20448217.1| relA/SpoT family protein [Neisseria meningitidis NM418]
gi|432201358|gb|ELK57440.1| relA/SpoT family protein [Neisseria meningitidis NM422]
gi|432225937|gb|ELK81673.1| relA/SpoT family protein [Neisseria meningitidis NM418]
Length = 737
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 519 TG 520
G
Sbjct: 369 GG 370
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 213 ELADRLHNMRTIYALPPA-KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
+LA R ++ + P + + RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+
Sbjct: 160 KLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQKPEK 219
Query: 272 FRKM 275
+R++
Sbjct: 220 YREI 223
>gi|303252702|ref|ZP_07338864.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 2 str. 4226]
gi|307248896|ref|ZP_07530907.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 2 str. S1536]
gi|302648441|gb|EFL78635.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 2 str. 4226]
gi|306854591|gb|EFM86783.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 2 str. S1536]
Length = 568
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 110/194 (56%), Gaps = 15/194 (7%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E V++A A+ AH GQ R +G+PY+TH + I+A + K +
Sbjct: 11 IQGYLPADKIELVKRAFVIARDAHEGQTRSSGEPYITHPVAVASIIAEM-----KLDHEA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLG 210
V+A +LHDV++D + + EFG VA++V GVS+L + R+ ++ N + L
Sbjct: 66 VMAALLHDVIEDTPYTEEQLAAEFGSSVAEIVQGVSKLDKLKFRTRQEAQVENFRKMILA 125
Query: 211 HEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 262
+ LADR HNMRT+ AL P K R +A+ETL I+ LA RLG+ LK ELEDL
Sbjct: 126 MTKDIRVVLIKLADRTHNMRTLGALRPDKRRRIAKETLEIYSPLAHRLGIEHLKNELEDL 185
Query: 263 CFAVLQPQIFRKMR 276
CF + P +R +R
Sbjct: 186 CFQAMHPHRYRVLR 199
Score = 102 bits (254), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 73/125 (58%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K LYS++ KMR++D H + D A RVVVG+ + CY L
Sbjct: 228 GIQGRVYGREKHLYSLYEKMRQRDQHFHSILDIYAFRVVVGN---------VDHCYRALG 278
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+H L+ P + DYI PK +GYQSLHT++ G G +EVQIRT+ M AE G+AAH
Sbjct: 279 QMHALYKPRPYKIRDYIAVPKTNGYQSLHTSMIGHKGVPIEVQIRTEDMDLMAELGVAAH 338
Query: 514 WLYKE 518
W Y E
Sbjct: 339 WRYTE 343
>gi|188534843|ref|YP_001908640.1| GDP/GTP pyrophosphokinase [Erwinia tasmaniensis Et1/99]
gi|188029885|emb|CAO97769.1| GTP pyrophosphokinase [Erwinia tasmaniensis Et1/99]
Length = 744
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 84/127 (66%), Gaps = 9/127 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K +YSI+ KM++K + +++D RA+R+V +Q CY L
Sbjct: 244 GVKAEVYGRPKHIYSIWRKMQKKSLAFDELFDVRAVRIV---------AERLQDCYGALG 294
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH L+ + EFDDY+ NPKP+GYQS+HT V GP G +E+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTLYRHLPSEFDDYVANPKPNGYQSIHTVVLGPKGKTVEIQIRTRQMHEDAELGVAAH 354
Query: 514 WLYKETG 520
W YKE G
Sbjct: 355 WKYKEGG 361
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 15/141 (10%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI------- 202
+T+ A +L + + + +E +FG + LV GV + I QL H
Sbjct: 74 ETLSAALLFPLANANVVTEDVLEAQFGQPIVSLVHGVRDMDAIRQLKATHNDSMASEQVD 133
Query: 203 NVNQGTLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 254
NV + L E LA+R+ ++R + P + A+E I+ LA+RLG+
Sbjct: 134 NVRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQ 193
Query: 255 LKAELEDLCFAVLQPQIFRKM 275
LK ELED CF L P+ ++++
Sbjct: 194 LKWELEDFCFRYLHPEEYKRI 214
>gi|254670577|emb|CBA06476.1| GTP pyrophosphokinase [Neisseria meningitidis alpha153]
Length = 773
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 294 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 344
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 345 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 404
Query: 519 TG 520
G
Sbjct: 405 GG 406
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 213 ELADRLHNMRTIYALPPA-KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
+LA R ++ + P + + RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+
Sbjct: 196 KLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQKPEK 255
Query: 272 FRKM 275
+R++
Sbjct: 256 YREI 259
>gi|59801730|ref|YP_208442.1| GTP pyrophosphokinase [Neisseria gonorrhoeae FA 1090]
gi|254494171|ref|ZP_05107342.1| GTP pyrophosphokinase [Neisseria gonorrhoeae 1291]
gi|268599563|ref|ZP_06133730.1| GTP pyrophosphokinase [Neisseria gonorrhoeae MS11]
gi|293398632|ref|ZP_06642810.1| GTP pyrophosphokinase [Neisseria gonorrhoeae F62]
gi|59718625|gb|AAW90030.1| putative GTP pyrophosphokinase [Neisseria gonorrhoeae FA 1090]
gi|226513211|gb|EEH62556.1| GTP pyrophosphokinase [Neisseria gonorrhoeae 1291]
gi|268583694|gb|EEZ48370.1| GTP pyrophosphokinase [Neisseria gonorrhoeae MS11]
gi|291611103|gb|EFF40200.1| GTP pyrophosphokinase [Neisseria gonorrhoeae F62]
Length = 737
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 519 TG 520
G
Sbjct: 369 GG 370
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 213 ELADRLHNMRTIYALPPA-KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
+LA R ++ + P + + RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+
Sbjct: 160 KLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEK 219
Query: 272 FRKM 275
+R++
Sbjct: 220 YREI 223
>gi|15677581|ref|NP_274738.1| GTP pyrophosphokinase [Neisseria meningitidis MC58]
gi|385852672|ref|YP_005899186.1| GTP diphosphokinase [Neisseria meningitidis H44/76]
gi|416195523|ref|ZP_11617762.1| GTP diphosphokinase [Neisseria meningitidis CU385]
gi|427826412|ref|ZP_18993465.1| GTP pyrophosphokinase [Neisseria meningitidis H44/76]
gi|433488915|ref|ZP_20446068.1| relA/SpoT family protein [Neisseria meningitidis M13255]
gi|433505519|ref|ZP_20462453.1| relA/SpoT family protein [Neisseria meningitidis 9506]
gi|433507728|ref|ZP_20464629.1| relA/SpoT family protein [Neisseria meningitidis 9757]
gi|433509821|ref|ZP_20466681.1| relA/SpoT family protein [Neisseria meningitidis 12888]
gi|433511928|ref|ZP_20468745.1| relA/SpoT family protein [Neisseria meningitidis 4119]
gi|7226990|gb|AAF42080.1| GTP pyrophosphokinase [Neisseria meningitidis MC58]
gi|316985746|gb|EFV64691.1| GTP pyrophosphokinase [Neisseria meningitidis H44/76]
gi|325140806|gb|EGC63316.1| GTP diphosphokinase [Neisseria meningitidis CU385]
gi|325199676|gb|ADY95131.1| GTP diphosphokinase [Neisseria meningitidis H44/76]
gi|432221990|gb|ELK77792.1| relA/SpoT family protein [Neisseria meningitidis M13255]
gi|432239674|gb|ELK95221.1| relA/SpoT family protein [Neisseria meningitidis 9506]
gi|432239778|gb|ELK95324.1| relA/SpoT family protein [Neisseria meningitidis 9757]
gi|432245123|gb|ELL00595.1| relA/SpoT family protein [Neisseria meningitidis 12888]
gi|432245955|gb|ELL01418.1| relA/SpoT family protein [Neisseria meningitidis 4119]
Length = 737
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 519 TG 520
G
Sbjct: 369 GG 370
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 213 ELADRLHNMRTIYALPPA-KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
+LA R ++ + P + + RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+
Sbjct: 160 KLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQKPEK 219
Query: 272 FRKM 275
+R++
Sbjct: 220 YREI 223
>gi|297581075|ref|ZP_06943000.1| GTP pyrophosphokinase [Vibrio cholerae RC385]
gi|297534901|gb|EFH73737.1| GTP pyrophosphokinase [Vibrio cholerae RC385]
Length = 738
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 89/132 (67%), Gaps = 9/132 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 IVHTKYKHLPNEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 353
Query: 514 WLYKETGNKLQS 525
W YKE + +S
Sbjct: 354 WKYKEGSSAARS 365
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 106/237 (44%), Gaps = 24/237 (10%)
Query: 123 GDPYLTHCIHTGR-ILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAK 181
G+P + GR ++ +LI S R T+VA +L S+EE +G EV K
Sbjct: 47 GNPQGPLLLWRGREMIEILITLSMDRP--TLVAALLFPNATSGVLDNESLEEGYGREVVK 104
Query: 182 LVAGVSRLSYINQL---------------LRRHRRINVNQGTLGHEELADRLHNMRTIYA 226
L+ GV ++ I QL +RR V+ +LA+R+ N+R +
Sbjct: 105 LIHGVEEMAAIGQLNVTMHGSEASAQVDNVRRMLLAMVDDFRCVVIKLAERICNLREVKN 164
Query: 227 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 286
P R A+E I+ LA+RLG+ LK E+ED F QP ++++ L+
Sbjct: 165 EPDEVRRVAAKECANIYAPLANRLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLSE----- 219
Query: 287 NRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 342
R+ + I VS + + + + + +H+ S+ + + + + FD L D R
Sbjct: 220 RRIVREQYIRDFVSDLRAEMKQSGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVR 276
>gi|331005362|ref|ZP_08328746.1| GTP pyrophosphokinase [gamma proteobacterium IMCC1989]
gi|330420816|gb|EGG95098.1| GTP pyrophosphokinase [gamma proteobacterium IMCC1989]
Length = 748
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 82/126 (65%), Gaps = 9/126 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
++ + R K +YSI+ KM+RK++G +VYD RA+R++V P + CY +L
Sbjct: 259 NIDAEVYGRAKHIYSIWRKMQRKNIGFSEVYDIRAVRILV---------PTTKDCYEVLG 309
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH LW I EFDDYI PK +GY+SLHTAV GP +EVQIR+ MHE AE+G+ +H
Sbjct: 310 IVHTLWRNIPHEFDDYIAAPKENGYRSLHTAVVGPSQRVIEVQIRSHSMHEEAEYGVCSH 369
Query: 514 WLYKET 519
W YK T
Sbjct: 370 WRYKGT 375
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 19/145 (13%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
+ ++A +L+ V + ++ ++E +GD V +L+ GVS ++ I+QL + Q +
Sbjct: 85 EALIAAVLYRGVREGKINILDVKERYGDTVERLIYGVSGMAAISQLRNDSEESALGQRSA 144
Query: 210 GHEE-------------------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 250
E LA+R +R + + + VA+E I+ LA RL
Sbjct: 145 DQTETVRKMLVSMVDDVRVALIKLAERTCAIRAVKDATDERKQKVAREVFDIYAPLAHRL 204
Query: 251 GLWALKAELEDLCFAVLQPQIFRKM 275
G+ +K ELEDL F L+P ++ +
Sbjct: 205 GIGHIKWELEDLGFRYLKPDDYKSI 229
>gi|194099159|ref|YP_002002244.1| putative GTP pyrophosphokinase [Neisseria gonorrhoeae NCCP11945]
gi|240014631|ref|ZP_04721544.1| putative GTP pyrophosphokinase [Neisseria gonorrhoeae DGI18]
gi|240017077|ref|ZP_04723617.1| putative GTP pyrophosphokinase [Neisseria gonorrhoeae FA6140]
gi|240121156|ref|ZP_04734118.1| putative GTP pyrophosphokinase [Neisseria gonorrhoeae PID24-1]
gi|268595274|ref|ZP_06129441.1| GTP pyrophosphokinase [Neisseria gonorrhoeae 35/02]
gi|268604151|ref|ZP_06138318.1| GTP pyrophosphokinase [Neisseria gonorrhoeae PID1]
gi|268684769|ref|ZP_06151631.1| GTP pyrophosphokinase [Neisseria gonorrhoeae SK-92-679]
gi|268687049|ref|ZP_06153911.1| GTP pyrophosphokinase [Neisseria gonorrhoeae SK-93-1035]
gi|291043321|ref|ZP_06569044.1| GTP pyrophosphokinase [Neisseria gonorrhoeae DGI2]
gi|385336161|ref|YP_005890108.1| putative GTP pyrophosphokinase [Neisseria gonorrhoeae TCDC-NG08107]
gi|193934449|gb|ACF30273.1| putative GTP pyrophosphokinase [Neisseria gonorrhoeae NCCP11945]
gi|268548663|gb|EEZ44081.1| GTP pyrophosphokinase [Neisseria gonorrhoeae 35/02]
gi|268588282|gb|EEZ52958.1| GTP pyrophosphokinase [Neisseria gonorrhoeae PID1]
gi|268625053|gb|EEZ57453.1| GTP pyrophosphokinase [Neisseria gonorrhoeae SK-92-679]
gi|268627333|gb|EEZ59733.1| GTP pyrophosphokinase [Neisseria gonorrhoeae SK-93-1035]
gi|291012927|gb|EFE04910.1| GTP pyrophosphokinase [Neisseria gonorrhoeae DGI2]
gi|317164704|gb|ADV08245.1| putative GTP pyrophosphokinase [Neisseria gonorrhoeae TCDC-NG08107]
Length = 737
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 519 TG 520
G
Sbjct: 369 GG 370
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 213 ELADRLHNMRTIYALPPA-KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
+LA R ++ + P + + RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+
Sbjct: 160 KLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEK 219
Query: 272 FRKM 275
+R++
Sbjct: 220 YREI 223
>gi|452850965|ref|YP_007492649.1| GTP pyrophosphokinase [Desulfovibrio piezophilus]
gi|451894619|emb|CCH47498.1| GTP pyrophosphokinase [Desulfovibrio piezophilus]
Length = 724
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 109/181 (60%), Gaps = 14/181 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+Q+A F+ +AH G R++G+PY++H ++ +LA + TV AG+LHD V+D
Sbjct: 23 IQRAYVFSAQAHDGVVRRSGEPYISHPMNVANLLADMQLDEA-----TVAAGLLHDTVED 77
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLGHEE--------L 214
++ IEE FG +VA +V GV+++S ++ + ++ N+ + L E L
Sbjct: 78 TDTTVDEIEELFGSDVADIVDGVTKISKMDFESKAVQQAENIRKLILAMAEDIRVLMVKL 137
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHNMRT+ + P K R +AQET I+ LA+RLGL +K ELEDLC L+P +F +
Sbjct: 138 ADRLHNMRTLQYMKPVKQRLIAQETQDIYAPLANRLGLHRVKTELEDLCLRYLKPDVFEQ 197
Query: 275 M 275
+
Sbjct: 198 L 198
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 94/162 (58%), Gaps = 10/162 (6%)
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +SI KM ++ + ++YD A R++V +++ CYS+L ++H W P
Sbjct: 236 RTKHFHSIHVKMEQQGLTFDEIYDLIAFRIIVD---------SLKDCYSVLGLIHAAWRP 286
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
+ G F DYI PK + YQSLH+ V GPDG +EVQIRT +M++ AE+G+AAHW YKE G
Sbjct: 287 VPGRFKDYISIPKANMYQSLHSTVIGPDGERIEVQIRTDEMNQIAEYGVAAHWQYKEVGK 346
Query: 522 KLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKM 563
++ + D E + L + D L +D + SSL++
Sbjct: 347 GIKKGKTAGTRDAERYTWLKQIMDWQREL-SDPREFMSSLRL 387
>gi|339445999|ref|YP_004712003.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Eggerthella sp. YY7918]
gi|338905751|dbj|BAK45602.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Eggerthella sp. YY7918]
Length = 791
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 81/129 (62%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K LYSI+ KM +K G ++YD A+R++V +++ CYS L
Sbjct: 279 GIQAQIMGRPKHLYSIYQKMTKKGKGFSEIYDLIAVRIIV---------KSVKDCYSALG 329
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
VH LW P+ G F DYI PK + YQSLHT V GP G LEVQIRT+ MH +E+G+AAH
Sbjct: 330 AVHTLWHPMPGRFKDYIAMPKFNMYQSLHTTVIGPAGRPLEVQIRTEDMHRTSEYGVAAH 389
Query: 514 WLYKETGNK 522
W YKE G K
Sbjct: 390 WRYKEKGGK 398
Score = 112 bits (280), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 114/205 (55%), Gaps = 16/205 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA FA AH GQ RK+G+P++ H + ILA L + V+T+VA +LHD V+D
Sbjct: 74 LEKAFRFASDAHAGQCRKSGEPFVAHPVEVAIILADL-----RMDVETLVASLLHDTVED 128
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYIN-QLLRRHRRINVNQGTLGHEE--------L 214
+ +E EF E+A+LV GV++++ I + L + + + + + L
Sbjct: 129 TSVTREDVEREFSPEIAQLVEGVTKITRIEVESLSDEQAATIRKMLVAMSKDIRVIVIKL 188
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHNMRT+ AL + ++ETL I+ +A RLG+ +K ELEDL F L+P F++
Sbjct: 189 ADRLHNMRTLGALREDRRIFKSRETLEIYAPIAHRLGINNIKWELEDLSFFYLEPNKFKQ 248
Query: 275 MRADLASMWSPRNRVGYSRRITTIV 299
+ + S R GY +I I+
Sbjct: 249 VSRMVTE--SRAEREGYLDQIIEIL 271
>gi|424592150|ref|ZP_18031574.1| GTP pyrophosphokinase [Vibrio cholerae CP1037(10)]
gi|408029811|gb|EKG66513.1| GTP pyrophosphokinase [Vibrio cholerae CP1037(10)]
Length = 738
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 89/132 (67%), Gaps = 9/132 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 IVHTKYKHLPNEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 353
Query: 514 WLYKETGNKLQS 525
W YKE + +S
Sbjct: 354 WKYKEGSSAARS 365
Score = 66.2 bits (160), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 107/237 (45%), Gaps = 24/237 (10%)
Query: 123 GDPYLTHCIHTGR-ILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAK 181
G+P + GR ++ +LI S R T+VA +L + S+EE +G EV K
Sbjct: 47 GNPQGPLLLWRGREMIEILITLSMDRP--TLVAALLFPIATSGVLDNESLEEGYGREVVK 104
Query: 182 LVAGVSRLSYINQL---------------LRRHRRINVNQGTLGHEELADRLHNMRTIYA 226
L+ GV ++ I QL +RR V+ +LA+R+ N+R +
Sbjct: 105 LIHGVEEMAAIGQLNVTMHGSEASAQVDNVRRMLLAMVDDFRCVVIKLAERICNLREVKN 164
Query: 227 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 286
P R A+E I+ LA+RLG+ LK E+ED F QP ++++ L+
Sbjct: 165 EPDEVRRVAAKECANIYAPLANRLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLSE----- 219
Query: 287 NRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 342
R+ + I VS + + + + + +H+ S+ + + + + FD L D R
Sbjct: 220 RRIVREQYIRDFVSDLRAEMKQSGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVR 276
>gi|386074939|ref|YP_005989257.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Leptospira
interrogans serovar Lai str. IPAV]
gi|353458729|gb|AER03274.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Leptospira
interrogans serovar Lai str. IPAV]
Length = 674
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 81/124 (65%), Gaps = 9/124 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH LW P G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPAPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 515 LYKE 518
+YKE
Sbjct: 346 IYKE 349
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 114/196 (58%), Gaps = 18/196 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E VQKA ++RAH GQFR +G+PY+ H + G IL L +D + AG+LHD
Sbjct: 27 ESVQKAYDVSERAHQGQFRLSGEPYIVHPLQVGFILYEL-------GLDEKVICAGLLHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------QLLRRHRRINVNQGTLG 210
V++D S + +FG+++ LV GV+++S I + +R+ + +
Sbjct: 80 VIEDTEYSREDMIRDFGEDITDLVEGVTKISKIKSQSKETEAAENIRKIIVATIKDIRVI 139
Query: 211 HEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 270
+LAD+ HN+RT+ PP K R +AQETL ++ +A RLG++ +K+ELEDL F +L P
Sbjct: 140 LIKLADKTHNLRTLSFQPPEKQRRIAQETLSLYAPIAGRLGIYKIKSELEDLAFQILNPD 199
Query: 271 IFRKMRADLASMWSPR 286
+++++ ++ S S R
Sbjct: 200 EYQEVKKNINSKKSER 215
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 760 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPEGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|315303282|ref|ZP_07873919.1| GTP diphosphokinase [Listeria ivanovii FSL F6-596]
gi|313628349|gb|EFR96845.1| GTP diphosphokinase [Listeria ivanovii FSL F6-596]
Length = 738
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 104/184 (56%), Gaps = 20/184 (10%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA+ +H QFRK+G+PY+ H I IL L K TV +G LHDVV+D
Sbjct: 28 VKKAYEFARDSHKEQFRKSGEPYIIHPIQVAGILVEL-----KMDPSTVASGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRL------SYINQLLRRHRRINVNQGTLGHE----- 212
+L +EE FG EVA LV GV++L S+ Q HR++ + + +
Sbjct: 83 TPVTLADLEEAFGSEVAMLVDGVTKLGKIKYKSHEEQQAENHRKMFI---AMAQDIRVIL 139
Query: 213 -ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
+LADRLHNMRT+ LP K R +A ETL I+ LA RLG+ +K ELED L PQ
Sbjct: 140 IKLADRLHNMRTLKHLPVEKQRRIANETLEIFAPLAHRLGISRVKWELEDTALRYLNPQQ 199
Query: 272 FRKM 275
+ ++
Sbjct: 200 YYRI 203
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMTEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
I+H W P+ G F DY+ PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYVAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 514 WLYKETGNKLQSISSMD 530
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
>gi|386816739|ref|ZP_10103957.1| (p)ppGpp synthetase I, SpoT/RelA [Thiothrix nivea DSM 5205]
gi|386421315|gb|EIJ35150.1| (p)ppGpp synthetase I, SpoT/RelA [Thiothrix nivea DSM 5205]
Length = 718
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 99/159 (62%), Gaps = 17/159 (10%)
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K LYSI+ K+ RK VGI ++YD RA+RV+V D CY LD+ H W
Sbjct: 249 RPKHLYSIWKKLCRKHVGIEELYDLRAVRVIVED---------TATCYHALDVAHEKWWH 299
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
I E+DDYI N K +GYQS+HT V GP+G +E+QIRT++MH +AE G+AAHW YKE G
Sbjct: 300 IPEEYDDYIGNKKANGYQSIHTVVIGPEGKYVEIQIRTREMHRFAELGVAAHWHYKEGGK 359
Query: 522 KLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSS 560
+ ++++ EA +S+ + D N D++L + + +
Sbjct: 360 QDRAMN-------EAINSMRRLLDA-NDSDSELMEDFRT 390
Score = 43.1 bits (100), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 233 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 280
R VA++T+ ++ LA+RLG+ +K ELEDL F L P ++ + LA
Sbjct: 169 RCVARQTMDLYAPLANRLGISQVKWELEDLSFRFLHPDTYKTIAKSLA 216
>gi|357038708|ref|ZP_09100505.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfotomaculum gibsoniae DSM
7213]
gi|355359500|gb|EHG07262.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfotomaculum gibsoniae DSM
7213]
Length = 725
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 91/141 (64%), Gaps = 13/141 (9%)
Query: 386 LISTSYIPGMEVTLSS----RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLH 441
+IS + MEV +++ R K+LYSI+ KM+++ + +++YD A+RV+V
Sbjct: 215 IISVLHKKMMEVKINAEIQGRPKNLYSIYMKMQKQQLEFNQIYDVMAVRVLVD------- 267
Query: 442 GPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQK 501
+++ CY++L VH LW+PI G F DYI PK + YQSLHT V P G LE+QIRT +
Sbjct: 268 --SVRDCYAVLGTVHTLWVPIPGRFKDYIAMPKSNMYQSLHTTVVSPQGDPLEIQIRTWE 325
Query: 502 MHEYAEHGLAAHWLYKETGNK 522
MH +E+G+AAHW YKE G K
Sbjct: 326 MHRTSEYGIAAHWRYKEGGGK 346
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 119/205 (58%), Gaps = 16/205 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+++A AFA AH GQ R +G+PY+TH + IL L + +DT+VAG+LHD V+D
Sbjct: 22 LKRAFAFANEAHAGQKRNSGEPYITHPVAITTILTDL-----EMDMDTLVAGLLHDTVED 76
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLGHE--------EL 214
+L IE+ FG EVA+LV GV++LS + + R++ N+ + L +L
Sbjct: 77 TGTTLEDIEKYFGREVAQLVDGVTKLSRLEYRSKEERQVENLRKMFLAMARDIRVVLIKL 136
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHNMRT+ K R +A ETL I+ LA RLG++ LK ELEDL P+ + +
Sbjct: 137 ADRLHNMRTLQYHLEHKQREIALETLEIFAPLAHRLGIYRLKWELEDLALRFSNPEKYYE 196
Query: 275 MRADLASMWSPRNRVGYSRRITTIV 299
+ ADL + + R Y R I +++
Sbjct: 197 L-ADLVAR-TREKREEYIRSIISVL 219
>gi|422911275|ref|ZP_16945901.1| GTP pyrophosphokinase [Vibrio cholerae HE-09]
gi|424660946|ref|ZP_18098193.1| GTP pyrophosphokinase [Vibrio cholerae HE-16]
gi|341631794|gb|EGS56671.1| GTP pyrophosphokinase [Vibrio cholerae HE-09]
gi|408049818|gb|EKG85007.1| GTP pyrophosphokinase [Vibrio cholerae HE-16]
Length = 738
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 89/132 (67%), Gaps = 9/132 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 IVHTKYKHLPNEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 353
Query: 514 WLYKETGNKLQS 525
W YKE + +S
Sbjct: 354 WKYKEGSSAARS 365
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 106/237 (44%), Gaps = 24/237 (10%)
Query: 123 GDPYLTHCIHTGR-ILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAK 181
G+P + GR ++ +LI S R T+VA +L + S+EE +G EV K
Sbjct: 47 GNPQGPLLLWRGREMIEILITLSMDRP--TLVAALLFPIATSGVLDNESLEEGYGREVVK 104
Query: 182 LVAGVSRLSYINQL---------------LRRHRRINVNQGTLGHEELADRLHNMRTIYA 226
L+ GV ++ I QL +RR V+ +LA+R+ N+R +
Sbjct: 105 LIHGVEEMAAIGQLNVTMHGSEASAQVDNVRRMLLAMVDDFRCVVIKLAERICNLREVKN 164
Query: 227 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 286
P R A+E I+ LA+RLG+ LK E+ED F QP ++++ L+
Sbjct: 165 EPDEVRRVAAKECANIYAPLANRLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLSE----- 219
Query: 287 NRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 342
R+ + I VS + + + + +H+ S+ + + + + FD L D R
Sbjct: 220 RRIVREQYIRDFVSDLRAEMKQLGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVR 276
>gi|15642447|ref|NP_232080.1| GTP pyrophosphokinase [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121728974|ref|ZP_01681978.1| GTP pyrophosphokinase [Vibrio cholerae V52]
gi|147673921|ref|YP_001217953.1| GTP pyrophosphokinase [Vibrio cholerae O395]
gi|153214531|ref|ZP_01949440.1| GTP pyrophosphokinase [Vibrio cholerae 1587]
gi|153803094|ref|ZP_01957680.1| GTP pyrophosphokinase [Vibrio cholerae MZO-3]
gi|227082572|ref|YP_002811123.1| GTP pyrophosphokinase [Vibrio cholerae M66-2]
gi|227118893|ref|YP_002820789.1| GTP pyrophosphokinase [Vibrio cholerae O395]
gi|229507489|ref|ZP_04396994.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae BX
330286]
gi|229512316|ref|ZP_04401795.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae B33]
gi|229514077|ref|ZP_04403539.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae TMA
21]
gi|229519452|ref|ZP_04408895.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae RC9]
gi|229521279|ref|ZP_04410699.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae TM
11079-80]
gi|229524437|ref|ZP_04413842.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae bv.
albensis VL426]
gi|229527057|ref|ZP_04416452.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae
12129(1)]
gi|229606994|ref|YP_002877642.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae
MJ-1236]
gi|254291651|ref|ZP_04962439.1| GTP pyrophosphokinase [Vibrio cholerae AM-19226]
gi|254849575|ref|ZP_05238925.1| GTP pyrophosphokinase [Vibrio cholerae MO10]
gi|255746878|ref|ZP_05420823.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholera CIRS
101]
gi|262162043|ref|ZP_06031059.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae INDRE
91/1]
gi|262167282|ref|ZP_06034992.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae RC27]
gi|298500192|ref|ZP_07009997.1| ppGpp synthetase I [Vibrio cholerae MAK 757]
gi|360036326|ref|YP_004938089.1| GTP pyrophosphokinase [Vibrio cholerae O1 str. 2010EL-1786]
gi|379742239|ref|YP_005334208.1| GTP pyrophosphokinase [Vibrio cholerae IEC224]
gi|384425390|ref|YP_005634748.1| GTP pyrophosphokinase(p)ppGpp synthetase I [Vibrio cholerae
LMA3984-4]
gi|417814466|ref|ZP_12461119.1| GTP pyrophosphokinase [Vibrio cholerae HC-49A2]
gi|417818206|ref|ZP_12464834.1| GTP pyrophosphokinase [Vibrio cholerae HCUF01]
gi|417821765|ref|ZP_12468379.1| GTP pyrophosphokinase [Vibrio cholerae HE39]
gi|417825669|ref|ZP_12472257.1| GTP pyrophosphokinase [Vibrio cholerae HE48]
gi|418335450|ref|ZP_12944359.1| GTP pyrophosphokinase [Vibrio cholerae HC-06A1]
gi|418339414|ref|ZP_12948304.1| GTP pyrophosphokinase [Vibrio cholerae HC-23A1]
gi|418346985|ref|ZP_12951738.1| GTP pyrophosphokinase [Vibrio cholerae HC-28A1]
gi|418350742|ref|ZP_12955473.1| GTP pyrophosphokinase [Vibrio cholerae HC-43A1]
gi|418355936|ref|ZP_12958655.1| GTP pyrophosphokinase [Vibrio cholerae HC-61A1]
gi|419827395|ref|ZP_14350894.1| relA/SpoT family protein [Vibrio cholerae CP1033(6)]
gi|419830884|ref|ZP_14354369.1| relA/SpoT family protein [Vibrio cholerae HC-1A2]
gi|419834569|ref|ZP_14358023.1| relA/SpoT family protein [Vibrio cholerae HC-61A2]
gi|419838141|ref|ZP_14361579.1| GTP pyrophosphokinase [Vibrio cholerae HC-46B1]
gi|421317796|ref|ZP_15768364.1| GTP pyrophosphokinase [Vibrio cholerae CP1032(5)]
gi|421322200|ref|ZP_15772752.1| GTP pyrophosphokinase [Vibrio cholerae CP1038(11)]
gi|421325997|ref|ZP_15776521.1| GTP pyrophosphokinase [Vibrio cholerae CP1041(14)]
gi|421329655|ref|ZP_15780165.1| GTP pyrophosphokinase [Vibrio cholerae CP1042(15)]
gi|421333611|ref|ZP_15784088.1| GTP pyrophosphokinase [Vibrio cholerae CP1046(19)]
gi|421337154|ref|ZP_15787615.1| GTP pyrophosphokinase [Vibrio cholerae CP1048(21)]
gi|421340581|ref|ZP_15791013.1| GTP pyrophosphokinase [Vibrio cholerae HC-20A2]
gi|421344309|ref|ZP_15794712.1| GTP pyrophosphokinase [Vibrio cholerae HC-43B1]
gi|421347819|ref|ZP_15798196.1| GTP pyrophosphokinase [Vibrio cholerae HC-46A1]
gi|421352155|ref|ZP_15802520.1| GTP pyrophosphokinase [Vibrio cholerae HE-25]
gi|421355134|ref|ZP_15805466.1| GTP pyrophosphokinase [Vibrio cholerae HE-45]
gi|422308384|ref|ZP_16395534.1| relA/SpoT family protein [Vibrio cholerae CP1035(8)]
gi|422897541|ref|ZP_16934980.1| GTP pyrophosphokinase [Vibrio cholerae HC-40A1]
gi|422903740|ref|ZP_16938704.1| GTP pyrophosphokinase [Vibrio cholerae HC-48A1]
gi|422907624|ref|ZP_16942417.1| GTP pyrophosphokinase [Vibrio cholerae HC-70A1]
gi|422914464|ref|ZP_16948968.1| GTP pyrophosphokinase [Vibrio cholerae HFU-02]
gi|422918283|ref|ZP_16952597.1| GTP pyrophosphokinase [Vibrio cholerae HC-02A1]
gi|422923744|ref|ZP_16956888.1| GTP pyrophosphokinase [Vibrio cholerae BJG-01]
gi|422926668|ref|ZP_16959680.1| GTP pyrophosphokinase [Vibrio cholerae HC-38A1]
gi|423145991|ref|ZP_17133584.1| GTP pyrophosphokinase [Vibrio cholerae HC-19A1]
gi|423150667|ref|ZP_17137980.1| GTP pyrophosphokinase [Vibrio cholerae HC-21A1]
gi|423154501|ref|ZP_17141665.1| GTP pyrophosphokinase [Vibrio cholerae HC-22A1]
gi|423157569|ref|ZP_17144661.1| GTP pyrophosphokinase [Vibrio cholerae HC-32A1]
gi|423161142|ref|ZP_17148080.1| GTP pyrophosphokinase [Vibrio cholerae HC-33A2]
gi|423165971|ref|ZP_17152690.1| GTP pyrophosphokinase [Vibrio cholerae HC-48B2]
gi|423732000|ref|ZP_17705301.1| relA/SpoT family protein [Vibrio cholerae HC-17A1]
gi|423736103|ref|ZP_17709293.1| relA/SpoT family protein [Vibrio cholerae HC-41B1]
gi|423771402|ref|ZP_17713566.1| relA/SpoT family protein [Vibrio cholerae HC-50A2]
gi|423823181|ref|ZP_17717189.1| relA/SpoT family protein [Vibrio cholerae HC-55C2]
gi|423857143|ref|ZP_17720992.1| relA/SpoT family protein [Vibrio cholerae HC-59A1]
gi|423884418|ref|ZP_17724585.1| relA/SpoT family protein [Vibrio cholerae HC-60A1]
gi|423896778|ref|ZP_17727610.1| relA/SpoT family protein [Vibrio cholerae HC-62A1]
gi|423931981|ref|ZP_17732003.1| relA/SpoT family protein [Vibrio cholerae HC-77A1]
gi|423957738|ref|ZP_17735481.1| relA/SpoT family protein [Vibrio cholerae HE-40]
gi|423985723|ref|ZP_17739037.1| relA/SpoT family protein [Vibrio cholerae HE-46]
gi|423998705|ref|ZP_17741955.1| GTP pyrophosphokinase [Vibrio cholerae HC-02C1]
gi|424003416|ref|ZP_17746490.1| GTP pyrophosphokinase [Vibrio cholerae HC-17A2]
gi|424007210|ref|ZP_17750179.1| GTP pyrophosphokinase [Vibrio cholerae HC-37A1]
gi|424010435|ref|ZP_17753368.1| GTP pyrophosphokinase [Vibrio cholerae HC-44C1]
gi|424017606|ref|ZP_17757432.1| GTP pyrophosphokinase [Vibrio cholerae HC-55B2]
gi|424020523|ref|ZP_17760304.1| GTP pyrophosphokinase [Vibrio cholerae HC-59B1]
gi|424025190|ref|ZP_17764839.1| GTP pyrophosphokinase [Vibrio cholerae HC-62B1]
gi|424028076|ref|ZP_17767677.1| GTP pyrophosphokinase [Vibrio cholerae HC-69A1]
gi|424587358|ref|ZP_18026936.1| GTP pyrophosphokinase [Vibrio cholerae CP1030(3)]
gi|424596012|ref|ZP_18035330.1| GTP pyrophosphokinase [Vibrio cholerae CP1040(13)]
gi|424599921|ref|ZP_18039099.1| GTP pyrophosphokinase [Vibrio Cholerae CP1044(17)]
gi|424602683|ref|ZP_18041822.1| GTP pyrophosphokinase [Vibrio cholerae CP1047(20)]
gi|424607617|ref|ZP_18046557.1| GTP pyrophosphokinase [Vibrio cholerae CP1050(23)]
gi|424611433|ref|ZP_18050271.1| GTP pyrophosphokinase [Vibrio cholerae HC-39A1]
gi|424614261|ref|ZP_18053045.1| GTP pyrophosphokinase [Vibrio cholerae HC-41A1]
gi|424618228|ref|ZP_18056898.1| GTP pyrophosphokinase [Vibrio cholerae HC-42A1]
gi|424623014|ref|ZP_18061517.1| GTP pyrophosphokinase [Vibrio cholerae HC-47A1]
gi|424625904|ref|ZP_18064363.1| GTP pyrophosphokinase [Vibrio cholerae HC-50A1]
gi|424630388|ref|ZP_18068670.1| GTP pyrophosphokinase [Vibrio cholerae HC-51A1]
gi|424634435|ref|ZP_18072533.1| GTP pyrophosphokinase [Vibrio cholerae HC-52A1]
gi|424637514|ref|ZP_18075520.1| GTP pyrophosphokinase [Vibrio cholerae HC-55A1]
gi|424641418|ref|ZP_18079298.1| GTP pyrophosphokinase [Vibrio cholerae HC-56A1]
gi|424645973|ref|ZP_18083707.1| GTP pyrophosphokinase [Vibrio cholerae HC-56A2]
gi|424649490|ref|ZP_18087150.1| GTP pyrophosphokinase [Vibrio cholerae HC-57A1]
gi|424653740|ref|ZP_18091119.1| GTP pyrophosphokinase [Vibrio cholerae HC-57A2]
gi|424657562|ref|ZP_18094846.1| GTP pyrophosphokinase [Vibrio cholerae HC-81A2]
gi|429886891|ref|ZP_19368429.1| GTP pyrophosphokinase [Vibrio cholerae PS15]
gi|440710676|ref|ZP_20891324.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae 4260B]
gi|443504790|ref|ZP_21071742.1| GTP pyrophosphokinase [Vibrio cholerae HC-64A1]
gi|443508696|ref|ZP_21075451.1| GTP pyrophosphokinase [Vibrio cholerae HC-65A1]
gi|443512534|ref|ZP_21079167.1| GTP pyrophosphokinase [Vibrio cholerae HC-67A1]
gi|443516093|ref|ZP_21082598.1| GTP pyrophosphokinase [Vibrio cholerae HC-68A1]
gi|443519884|ref|ZP_21086272.1| GTP pyrophosphokinase [Vibrio cholerae HC-71A1]
gi|443524779|ref|ZP_21090982.1| GTP pyrophosphokinase [Vibrio cholerae HC-72A2]
gi|443528409|ref|ZP_21094445.1| GTP pyrophosphokinase [Vibrio cholerae HC-78A1]
gi|443532363|ref|ZP_21098377.1| GTP pyrophosphokinase [Vibrio cholerae HC-7A1]
gi|443536177|ref|ZP_21102044.1| GTP pyrophosphokinase [Vibrio cholerae HC-80A1]
gi|443539705|ref|ZP_21105558.1| GTP pyrophosphokinase [Vibrio cholerae HC-81A1]
gi|449055108|ref|ZP_21733776.1| GTP pyrophosphokinase [Vibrio cholerae O1 str. Inaba G4222]
gi|5738224|gb|AAD50301.1|AF175295_1 ppGpp synthetase I [Vibrio cholerae]
gi|9657028|gb|AAF95593.1| GTP pyrophosphokinase [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121628740|gb|EAX61207.1| GTP pyrophosphokinase [Vibrio cholerae V52]
gi|124115333|gb|EAY34153.1| GTP pyrophosphokinase [Vibrio cholerae 1587]
gi|124121376|gb|EAY40119.1| GTP pyrophosphokinase [Vibrio cholerae MZO-3]
gi|146315804|gb|ABQ20343.1| GTP pyrophosphokinase [Vibrio cholerae O395]
gi|150422423|gb|EDN14382.1| GTP pyrophosphokinase [Vibrio cholerae AM-19226]
gi|227010460|gb|ACP06672.1| GTP pyrophosphokinase [Vibrio cholerae M66-2]
gi|227014343|gb|ACP10553.1| GTP pyrophosphokinase [Vibrio cholerae O395]
gi|229335454|gb|EEO00936.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae
12129(1)]
gi|229338018|gb|EEO03035.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae bv.
albensis VL426]
gi|229341811|gb|EEO06813.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae TM
11079-80]
gi|229344141|gb|EEO09116.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae RC9]
gi|229349258|gb|EEO14215.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae TMA
21]
gi|229352281|gb|EEO17222.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae B33]
gi|229354994|gb|EEO19915.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae BX
330286]
gi|229369649|gb|ACQ60072.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae
MJ-1236]
gi|254845280|gb|EET23694.1| GTP pyrophosphokinase [Vibrio cholerae MO10]
gi|255735280|gb|EET90680.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholera CIRS
101]
gi|262024257|gb|EEY42948.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae RC27]
gi|262028292|gb|EEY46949.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae INDRE
91/1]
gi|297540885|gb|EFH76939.1| ppGpp synthetase I [Vibrio cholerae MAK 757]
gi|327484943|gb|AEA79350.1| GTP pyrophosphokinase(p)ppGpp synthetase I [Vibrio cholerae
LMA3984-4]
gi|340035802|gb|EGQ96780.1| GTP pyrophosphokinase [Vibrio cholerae HCUF01]
gi|340036952|gb|EGQ97928.1| GTP pyrophosphokinase [Vibrio cholerae HC-49A2]
gi|340039396|gb|EGR00371.1| GTP pyrophosphokinase [Vibrio cholerae HE39]
gi|340047154|gb|EGR08084.1| GTP pyrophosphokinase [Vibrio cholerae HE48]
gi|341619797|gb|EGS45599.1| GTP pyrophosphokinase [Vibrio cholerae HC-48A1]
gi|341619914|gb|EGS45701.1| GTP pyrophosphokinase [Vibrio cholerae HC-70A1]
gi|341620719|gb|EGS46485.1| GTP pyrophosphokinase [Vibrio cholerae HC-40A1]
gi|341635328|gb|EGS60046.1| GTP pyrophosphokinase [Vibrio cholerae HC-02A1]
gi|341636276|gb|EGS60978.1| GTP pyrophosphokinase [Vibrio cholerae HFU-02]
gi|341643547|gb|EGS67829.1| GTP pyrophosphokinase [Vibrio cholerae BJG-01]
gi|341645669|gb|EGS69798.1| GTP pyrophosphokinase [Vibrio cholerae HC-38A1]
gi|356416485|gb|EHH70116.1| GTP pyrophosphokinase [Vibrio cholerae HC-06A1]
gi|356417344|gb|EHH70962.1| GTP pyrophosphokinase [Vibrio cholerae HC-21A1]
gi|356422235|gb|EHH75718.1| GTP pyrophosphokinase [Vibrio cholerae HC-19A1]
gi|356427706|gb|EHH80947.1| GTP pyrophosphokinase [Vibrio cholerae HC-22A1]
gi|356428374|gb|EHH81601.1| GTP pyrophosphokinase [Vibrio cholerae HC-23A1]
gi|356429513|gb|EHH82729.1| GTP pyrophosphokinase [Vibrio cholerae HC-28A1]
gi|356439039|gb|EHH92039.1| GTP pyrophosphokinase [Vibrio cholerae HC-32A1]
gi|356443635|gb|EHH96454.1| GTP pyrophosphokinase [Vibrio cholerae HC-33A2]
gi|356445238|gb|EHH98047.1| GTP pyrophosphokinase [Vibrio cholerae HC-43A1]
gi|356449562|gb|EHI02308.1| GTP pyrophosphokinase [Vibrio cholerae HC-48B2]
gi|356452434|gb|EHI05113.1| GTP pyrophosphokinase [Vibrio cholerae HC-61A1]
gi|356647480|gb|AET27535.1| GTP pyrophosphokinase [Vibrio cholerae O1 str. 2010EL-1786]
gi|378795749|gb|AFC59220.1| GTP pyrophosphokinase [Vibrio cholerae IEC224]
gi|395916054|gb|EJH26884.1| GTP pyrophosphokinase [Vibrio cholerae CP1032(5)]
gi|395917835|gb|EJH28663.1| GTP pyrophosphokinase [Vibrio cholerae CP1041(14)]
gi|395917940|gb|EJH28767.1| GTP pyrophosphokinase [Vibrio cholerae CP1038(11)]
gi|395928189|gb|EJH38952.1| GTP pyrophosphokinase [Vibrio cholerae CP1042(15)]
gi|395929013|gb|EJH39766.1| GTP pyrophosphokinase [Vibrio cholerae CP1046(19)]
gi|395932253|gb|EJH42997.1| GTP pyrophosphokinase [Vibrio cholerae CP1048(21)]
gi|395939864|gb|EJH50546.1| GTP pyrophosphokinase [Vibrio cholerae HC-20A2]
gi|395940389|gb|EJH51070.1| GTP pyrophosphokinase [Vibrio cholerae HC-43B1]
gi|395942398|gb|EJH53074.1| GTP pyrophosphokinase [Vibrio cholerae HC-46A1]
gi|395952600|gb|EJH63214.1| GTP pyrophosphokinase [Vibrio cholerae HE-25]
gi|395954259|gb|EJH64872.1| GTP pyrophosphokinase [Vibrio cholerae HE-45]
gi|395957729|gb|EJH68258.1| GTP pyrophosphokinase [Vibrio cholerae HC-56A2]
gi|395958232|gb|EJH68732.1| GTP pyrophosphokinase [Vibrio cholerae HC-57A2]
gi|395960863|gb|EJH71218.1| GTP pyrophosphokinase [Vibrio cholerae HC-42A1]
gi|395970116|gb|EJH79923.1| GTP pyrophosphokinase [Vibrio cholerae HC-47A1]
gi|395972027|gb|EJH81648.1| GTP pyrophosphokinase [Vibrio cholerae CP1030(3)]
gi|395974486|gb|EJH84012.1| GTP pyrophosphokinase [Vibrio cholerae CP1047(20)]
gi|408006173|gb|EKG44345.1| GTP pyrophosphokinase [Vibrio cholerae HC-39A1]
gi|408010755|gb|EKG48604.1| GTP pyrophosphokinase [Vibrio cholerae HC-41A1]
gi|408011081|gb|EKG48917.1| GTP pyrophosphokinase [Vibrio cholerae HC-50A1]
gi|408017205|gb|EKG54723.1| GTP pyrophosphokinase [Vibrio cholerae HC-52A1]
gi|408022024|gb|EKG59253.1| GTP pyrophosphokinase [Vibrio cholerae HC-56A1]
gi|408022459|gb|EKG59668.1| GTP pyrophosphokinase [Vibrio cholerae HC-55A1]
gi|408030562|gb|EKG67217.1| GTP pyrophosphokinase [Vibrio cholerae CP1040(13)]
gi|408031260|gb|EKG67896.1| GTP pyrophosphokinase [Vibrio cholerae HC-57A1]
gi|408040647|gb|EKG76818.1| GTP pyrophosphokinase [Vibrio Cholerae CP1044(17)]
gi|408041951|gb|EKG78034.1| GTP pyrophosphokinase [Vibrio cholerae CP1050(23)]
gi|408051884|gb|EKG86957.1| GTP pyrophosphokinase [Vibrio cholerae HC-81A2]
gi|408053460|gb|EKG88474.1| GTP pyrophosphokinase [Vibrio cholerae HC-51A1]
gi|408608185|gb|EKK81588.1| relA/SpoT family protein [Vibrio cholerae CP1033(6)]
gi|408617654|gb|EKK90767.1| relA/SpoT family protein [Vibrio cholerae CP1035(8)]
gi|408620657|gb|EKK93669.1| relA/SpoT family protein [Vibrio cholerae HC-1A2]
gi|408622445|gb|EKK95429.1| relA/SpoT family protein [Vibrio cholerae HC-17A1]
gi|408629075|gb|EKL01788.1| relA/SpoT family protein [Vibrio cholerae HC-41B1]
gi|408632862|gb|EKL05290.1| relA/SpoT family protein [Vibrio cholerae HC-50A2]
gi|408634289|gb|EKL06552.1| relA/SpoT family protein [Vibrio cholerae HC-55C2]
gi|408639747|gb|EKL11554.1| relA/SpoT family protein [Vibrio cholerae HC-59A1]
gi|408640068|gb|EKL11869.1| relA/SpoT family protein [Vibrio cholerae HC-60A1]
gi|408648702|gb|EKL20037.1| relA/SpoT family protein [Vibrio cholerae HC-61A2]
gi|408653573|gb|EKL24735.1| relA/SpoT family protein [Vibrio cholerae HC-77A1]
gi|408654066|gb|EKL25209.1| relA/SpoT family protein [Vibrio cholerae HC-62A1]
gi|408656146|gb|EKL27244.1| relA/SpoT family protein [Vibrio cholerae HE-40]
gi|408663566|gb|EKL34435.1| relA/SpoT family protein [Vibrio cholerae HE-46]
gi|408844309|gb|EKL84441.1| GTP pyrophosphokinase [Vibrio cholerae HC-37A1]
gi|408845065|gb|EKL85186.1| GTP pyrophosphokinase [Vibrio cholerae HC-17A2]
gi|408852147|gb|EKL91991.1| GTP pyrophosphokinase [Vibrio cholerae HC-02C1]
gi|408856689|gb|EKL96384.1| GTP pyrophosphokinase [Vibrio cholerae HC-46B1]
gi|408858724|gb|EKL98396.1| GTP pyrophosphokinase [Vibrio cholerae HC-55B2]
gi|408863064|gb|EKM02560.1| GTP pyrophosphokinase [Vibrio cholerae HC-44C1]
gi|408866721|gb|EKM06098.1| GTP pyrophosphokinase [Vibrio cholerae HC-59B1]
gi|408869588|gb|EKM08884.1| GTP pyrophosphokinase [Vibrio cholerae HC-62B1]
gi|408878352|gb|EKM17362.1| GTP pyrophosphokinase [Vibrio cholerae HC-69A1]
gi|429226203|gb|EKY32343.1| GTP pyrophosphokinase [Vibrio cholerae PS15]
gi|439974005|gb|ELP50209.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae 4260B]
gi|443430869|gb|ELS73427.1| GTP pyrophosphokinase [Vibrio cholerae HC-64A1]
gi|443434699|gb|ELS80851.1| GTP pyrophosphokinase [Vibrio cholerae HC-65A1]
gi|443438592|gb|ELS88312.1| GTP pyrophosphokinase [Vibrio cholerae HC-67A1]
gi|443442629|gb|ELS95937.1| GTP pyrophosphokinase [Vibrio cholerae HC-68A1]
gi|443446518|gb|ELT03182.1| GTP pyrophosphokinase [Vibrio cholerae HC-71A1]
gi|443449232|gb|ELT09533.1| GTP pyrophosphokinase [Vibrio cholerae HC-72A2]
gi|443453228|gb|ELT17059.1| GTP pyrophosphokinase [Vibrio cholerae HC-78A1]
gi|443457753|gb|ELT25150.1| GTP pyrophosphokinase [Vibrio cholerae HC-7A1]
gi|443460680|gb|ELT31764.1| GTP pyrophosphokinase [Vibrio cholerae HC-80A1]
gi|443464835|gb|ELT39496.1| GTP pyrophosphokinase [Vibrio cholerae HC-81A1]
gi|448265150|gb|EMB02385.1| GTP pyrophosphokinase [Vibrio cholerae O1 str. Inaba G4222]
Length = 738
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 89/132 (67%), Gaps = 9/132 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 IVHTKYKHLPNEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 353
Query: 514 WLYKETGNKLQS 525
W YKE + +S
Sbjct: 354 WKYKEGSSAARS 365
Score = 66.2 bits (160), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 107/237 (45%), Gaps = 24/237 (10%)
Query: 123 GDPYLTHCIHTGR-ILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAK 181
G+P + GR ++ +LI S R T+VA +L + S+EE +G EV K
Sbjct: 47 GNPQGPLLLWRGREMIEILITLSMDRP--TLVAALLFPIATSGVLDNESLEEGYGREVVK 104
Query: 182 LVAGVSRLSYINQL---------------LRRHRRINVNQGTLGHEELADRLHNMRTIYA 226
L+ GV ++ I QL +RR V+ +LA+R+ N+R +
Sbjct: 105 LIHGVEEMAAIGQLNVTMHGSEASAQVDNVRRMLLAMVDDFRCVVIKLAERICNLREVKN 164
Query: 227 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 286
P R A+E I+ LA+RLG+ LK E+ED F QP ++++ L+
Sbjct: 165 EPDEVRRVAAKECANIYAPLANRLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLSE----- 219
Query: 287 NRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 342
R+ + I VS + + + + + +H+ S+ + + + + FD L D R
Sbjct: 220 RRIVREQYIRDFVSDLRAEMKQSGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVR 276
>gi|330718281|ref|ZP_08312881.1| GTP pyrophosphokinase [Leuconostoc fallax KCTC 3537]
Length = 745
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 112/191 (58%), Gaps = 21/191 (10%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+ A +A H Q RK+G+PY+ H I ILA L K TVVAG LHDVV+D
Sbjct: 28 VKAAYEWAADLHKEQLRKSGEPYIIHPIQVAGILADL-----KMDTATVVAGYLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRRINVNQGTLGHE----- 212
+L +E++FGD VA+++ GV+++S I QL HR++ + + +
Sbjct: 83 TPATLEDVEDKFGDTVARIIDGVTKISKIKYKSSQEQLAENHRKLLL---AMSQDIRVII 139
Query: 213 -ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
+LADRLHNMRT+ AL P K + +A ETL I+ LA RLG+ A+K ELEDL + L P+
Sbjct: 140 VKLADRLHNMRTLGALRPDKQQRIANETLDIYAPLADRLGISAMKWELEDLSLSYLNPEE 199
Query: 272 FRKMRADLASM 282
+ + A L +M
Sbjct: 200 YHHI-ASLMNM 209
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 58/132 (43%), Positives = 75/132 (56%), Gaps = 9/132 (6%)
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +YSI+ KM K+ ++YD A+R++ I Y++L +H W P
Sbjct: 242 RPKHIYSIYRKMVDKNKNFEEIYDLSAVRILTN---------TIPDTYAILGAIHSKWTP 292
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 521
I G F DYI PK +GYQSLHT V GP G LEVQIRT MHE AE G+AAHW YK+
Sbjct: 293 IPGRFKDYIALPKANGYQSLHTTVIGPGGRPLEVQIRTHDMHEIAEFGVAAHWAYKKNKG 352
Query: 522 KLQSISSMDESD 533
Q D+++
Sbjct: 353 SDQEAKIKDQTE 364
>gi|70726288|ref|YP_253202.1| GTP pyrophosphokinase [Staphylococcus haemolyticus JCSC1435]
gi|68447012|dbj|BAE04596.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) (PPGPP
synthetase I) ((P)PPGPP synthetase) [Staphylococcus
haemolyticus JCSC1435]
Length = 729
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 94/157 (59%), Gaps = 21/157 (13%)
Query: 395 MEVT--LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLL 452
M++T +S R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 232 MDITGEISGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAIL 282
Query: 453 DIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAA 512
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MHE AEHG+AA
Sbjct: 283 GLVHTLWKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTYEMHEIAEHGVAA 342
Query: 513 HWLYKETG----------NKLQSISSMDESDIEASSS 539
HW YKE NKL + + E+D +S +
Sbjct: 343 HWAYKEGKTVNEKNQDFQNKLNWLKELAEADHTSSDA 379
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 98/182 (53%), Gaps = 15/182 (8%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
+ V K+ A AH GQFRK G PY+ H I IL + + T+VAG LHDV+
Sbjct: 26 QYVLKSYHIAYEAHQGQFRKNGLPYIMHPIQVAGILTEM-----RLDGPTIVAGFLHDVI 80
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRRINV---NQGTLGHE 212
+D + +++ F +E+A++V GV++L + Q HR++ + +
Sbjct: 81 EDTPYTFDDVKDMFNEEIARIVDGVTKLKKVKYRSKEEQQAENHRKLFIAIAKDVRVILV 140
Query: 213 ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP-QI 271
+LADRLHNMRT+ A+ K +++ETL I+ LA RLG+ +K ELED + Q
Sbjct: 141 KLADRLHNMRTLKAMAREKQVRISKETLEIYAPLAHRLGINTIKWELEDTALRYIDSVQY 200
Query: 272 FR 273
FR
Sbjct: 201 FR 202
>gi|406962538|gb|EKD88859.1| hypothetical protein ACD_34C00295G0001, partial [uncultured
bacterium]
Length = 691
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 144/293 (49%), Gaps = 60/293 (20%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVV-- 153
Y + + E + A +A+ AH GQ R +G+PY+THC+ ILA + V +V
Sbjct: 22 YSVADREMITHAYKYAETAHEGQKRASGEPYITHCVAVAIILAEM-------QVQPIVVS 74
Query: 154 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYI--------------------- 192
A +LHD V+D +L I +EFG E+ LV GV++L+++
Sbjct: 75 AALLHDTVEDTKITLDDIRKEFGTEIGGLVDGVTKLTHLPRVSRADQHDAEIFEQITKDS 134
Query: 193 --------NQLLRRHRRINVNQG------TLGHE------ELADRLHNMRTIYALPPAKA 232
+QL R RR N+ +G + +LADRLHNMRT+ +P K
Sbjct: 135 EADDSLLDSQLARDRRRDLANETLRKTFLAMGEDIRVILIKLADRLHNMRTLGFMPEKKR 194
Query: 233 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR--VG 290
+ +AQETL I+ LA+RLG+W LK ELEDL F P+ ++++ +L+ R+R
Sbjct: 195 KRIAQETLDIFAPLANRLGIWQLKWELEDLGFRYTNPEKYKEIAQNLSETRLERDRQMQA 254
Query: 291 YSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 342
S ++ ++S A + +H+ S+ K + E PF+++ D R
Sbjct: 255 ISDKLEKLLSD-------AGVKVDISARSKHIFSIYKKMQEKNKPFELVRDLR 300
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/148 (45%), Positives = 90/148 (60%), Gaps = 14/148 (9%)
Query: 373 SLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 432
+ A + LEK L+S + G++V +S+R K ++SI+ KM+ K+ V D R +R++
Sbjct: 251 QMQAISDKLEK--LLSDA---GVKVDISARSKHIFSIYKKMQEKNKPFELVRDLRGVRLI 305
Query: 433 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 492
V P I CYS L ++H W PI EFDDYI PK + YQSLHTA+ DG
Sbjct: 306 V---------PDIPSCYSALGLIHTNWRPIPNEFDDYIAGPKDNFYQSLHTAILYDDGKP 356
Query: 493 LEVQIRTQKMHEYAEHGLAAHWLYKETG 520
LEVQIRT +M E AE G+AAHW YKE G
Sbjct: 357 LEVQIRTPEMDENAEFGIAAHWKYKEKG 384
>gi|403070228|ref|ZP_10911560.1| GTP pyrophosphokinase [Oceanobacillus sp. Ndiop]
Length = 733
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 109/200 (54%), Gaps = 16/200 (8%)
Query: 87 IVDGVDVTGYPIFND--EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSS 144
I D ++ + ND E +Q A FA AHH QFRK+G+PY+ H + ILA L
Sbjct: 9 ITDIINKASIYLSNDDVELIQHAYDFASEAHHDQFRKSGEPYIIHPVQVAGILANL---- 64
Query: 145 GKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRR 198
+ +T+ G LHDVV+D +L +E+EF E+A LV GV++L I Q
Sbjct: 65 -EMDAETIAGGFLHDVVEDTDVTLEKMEQEFNHEIAMLVDGVTKLGKIRYETKEAQQAEN 123
Query: 199 HRRINVNQGT---LGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 255
HR++ V + +LADRLHNMRT+ L K R ++ ETL I+ LA RLG+ +
Sbjct: 124 HRKMFVAMAKDIRVILIKLADRLHNMRTLKHLSSEKQRRISNETLEIFAPLAHRLGISTI 183
Query: 256 KAELEDLCFAVLQPQIFRKM 275
K ELED L PQ + ++
Sbjct: 184 KWELEDTALRYLNPQQYYRI 203
Score = 125 bits (315), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
+E +S R K LYSI+ KM ++ +++YD A+R++V +I+ CY++L
Sbjct: 233 NIEAEMSGRPKHLYSIYQKMVLQNKQFNEIYDLLAVRIIVD---------SIKDCYAVLG 283
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
I+H W P+ G F DYI PK + YQSLHT V GP G LEVQIRT++MHE AE+G+AAH
Sbjct: 284 IIHTNWKPMPGRFKDYIAMPKQNLYQSLHTTVIGPKGDPLEVQIRTKEMHEIAEYGIAAH 343
Query: 514 WLYKE 518
W YKE
Sbjct: 344 WAYKE 348
>gi|269965228|ref|ZP_06179362.1| GTP pyrophosphokinase [Vibrio alginolyticus 40B]
gi|269830214|gb|EEZ84441.1| GTP pyrophosphokinase [Vibrio alginolyticus 40B]
Length = 739
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 87/127 (68%), Gaps = 9/127 (7%)
Query: 392 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 451
+ G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+
Sbjct: 241 VSGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAA 291
Query: 452 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 511
L +VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+A
Sbjct: 292 LGVVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVA 351
Query: 512 AHWLYKE 518
AHW YKE
Sbjct: 352 AHWKYKE 358
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 136 ILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL 195
++ +LI S +A T+VA L +V + ++EE++ E+ KL+ GV ++ I QL
Sbjct: 61 MIEILITLSMDQA--TLVAAQLFPLVSSGAFNRETLEEKYSKEIIKLIDGVEEMAAIGQL 118
Query: 196 ---------------LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETL 240
+RR V+ +LA+R+ N+ + P RA A+E
Sbjct: 119 NVNMEGSAASSQVDNVRRMLLAMVDDFRCVVIKLAERICNLIEVKKAPDEVRRAAAKECA 178
Query: 241 LIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 280
I+ LA+RLG+ LK E+ED F QP+ ++++ L+
Sbjct: 179 NIYAPLANRLGIGQLKWEIEDYAFRYQQPETYKQIAKQLS 218
>gi|433512854|ref|ZP_20469654.1| relA/SpoT family protein [Neisseria meningitidis 63049]
gi|432249680|gb|ELL05083.1| relA/SpoT family protein [Neisseria meningitidis 63049]
Length = 737
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM +K + ++D RA+R+++ + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILID---------TVPECYTTLGIVHSL 308
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 519 TG 520
G
Sbjct: 369 GG 370
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 213 ELADRLHNMRTIYALPPA-KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
+LA R ++ + P + + RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+
Sbjct: 160 KLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEK 219
Query: 272 FRKM 275
+R++
Sbjct: 220 YREI 223
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,454,072,929
Number of Sequences: 23463169
Number of extensions: 516402994
Number of successful extensions: 1417629
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5234
Number of HSP's successfully gapped in prelim test: 1555
Number of HSP's that attempted gapping in prelim test: 1386228
Number of HSP's gapped (non-prelim): 17860
length of query: 815
length of database: 8,064,228,071
effective HSP length: 151
effective length of query: 664
effective length of database: 8,816,256,848
effective search space: 5853994547072
effective search space used: 5853994547072
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 81 (35.8 bits)