BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003497
(815 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P74007|SPOT_SYNY3 Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=spoT
PE=3 SV=1
Length = 760
Score = 152 bits (385), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 134/429 (31%), Positives = 196/429 (45%), Gaps = 98/429 (22%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A FA H Q RK+G+PY+ H + +L L G A+ + AG LHDVV+D
Sbjct: 56 RAFCFAYDLHAQQRRKSGEPYIAHPVAVAGLLRDL---GGDEAM--IAAGFLHDVVEDTD 110
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEELADRLHNMRTIY 225
S+ IE FG+E A LV GV++LS N T H+ N R ++
Sbjct: 111 ISIEQIEALFGEETASLVEGVTKLSKFN-----------FSSTTEHQA-----ENFRRMF 154
Query: 226 ALPPAKARAVAQETLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASMWS 284
A+A++ +I LA RL + L A L P+ R++ + +++
Sbjct: 155 L-------AMAKDIRVIVVKLADRLHNMRTLDA---------LSPEKQRRIARETKDIFA 198
Query: 285 P-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRK 343
P NR+G R + +D SF + S + + VV + DR
Sbjct: 199 PLANRLGIWRF------------KWELEDLSFKYLEPD--SYRKIQSLVV--EKRGDRES 242
Query: 344 RTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRL 403
R + + D+ + ++D GI E E L R
Sbjct: 243 RLETVKDMLRFR--------LRDEGI---------EHFE----------------LQGRP 269
Query: 404 KSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPID 463
K LY I+ KM +D ++YD ALR++V K CY L +VH ++ PI
Sbjct: 270 KHLYGIYYKMTSQDKAFEEIYDIAALRIIVESKGE---------CYRALSVVHDVFKPIP 320
Query: 464 GEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET-GNK 522
G F DYI PKP+ YQSLHT V G LE+QIRT++MH AE+G+AAHW YKE+ G++
Sbjct: 321 GRFKDYIGLPKPNRYQSLHTTVLGLTSRPLEIQIRTEEMHHVAEYGIAAHWKYKESGGSE 380
Query: 523 LQSISSMDE 531
+++S DE
Sbjct: 381 NATLTSTDE 389
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 713 ASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRL 772
S + K LR +L W+ L+ ++ K N D V V P GE++ L
Sbjct: 385 TSTDEKFTWLRQLLDWQSDLKDAQEYVENL---KQNLFDDDVY------VFTPKGEVISL 435
Query: 773 RSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 813
G+T D A + VG K VNGQ + +T LK+GDIVE+
Sbjct: 436 ARGATPVDFAYRIHTEVGHHMKGARVNGQWLGVDTRLKNGDIVEI 480
>sp|Q49640|RELA_MYCLE Probable GTP pyrophosphokinase OS=Mycobacterium leprae (strain TN)
GN=relA PE=3 SV=1
Length = 787
Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 107/187 (57%), Gaps = 12/187 (6%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP N VQ+A A + H Q R++GDPY+TH + ILA L + T+VA
Sbjct: 72 YPKANLSIVQRAFEVADQRHASQLRRSGDPYITHPLAVANILAEL-----GMDITTLVAA 126
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYI-------NQLLRRHRRINVNQGT 208
+LHD V+D +L ++ EEFGDEV LV GV++L + + +R+
Sbjct: 127 LLHDTVEDTGYTLEALSEEFGDEVGHLVDGVTKLDRVVLGSAAEGETIRKMITAMARDPR 186
Query: 209 LGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQ 268
+ ++ADRLHNMRT+ LPP K A+ETL + LA RLG+ ++K ELEDL FA+L
Sbjct: 187 VLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMASVKWELEDLSFAILH 246
Query: 269 PQIFRKM 275
P+ + ++
Sbjct: 247 PKKYEEI 253
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 79/137 (57%), Gaps = 9/137 (6%)
Query: 386 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 445
+IST ++ T+ R K +SI+ KM K ++D +R++ + I
Sbjct: 275 IISTLGASKIKATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGIRILCDE---------I 325
Query: 446 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 505
+ CY+ + +VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT+ MH
Sbjct: 326 RDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTRDMHRT 385
Query: 506 AEHGLAAHWLYKETGNK 522
AE+G+AAHW YKE +
Sbjct: 386 AEYGIAAHWRYKEAKGR 402
Score = 33.5 bits (75), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 760 VIVCWPNGEIMRLRSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 813
+ V P G+++ L +GST D A V E G + VNG+LV +L++G+ VE+
Sbjct: 449 IFVFTPKGDVITLPTGSTPVDFAYAVHTEVGHRCIGARVNGRLVALERKLENGEFVEI 506
>sp|Q6GG70|RELA_STAAR GTP pyrophosphokinase OS=Staphylococcus aureus (strain MRSA252)
GN=relA PE=3 SV=1
Length = 736
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 514 WLYKE----------TGNKLQSISSMDESDIEASSS 539
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 99/182 (54%), Gaps = 15/182 (8%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E V K+ A AH GQFRK G PY+ H I IL + + T+VAG LHDV+
Sbjct: 33 EYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGILTEM-----RLDGPTIVAGFLHDVI 87
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRRINV---NQGTLGHE 212
+D + ++E F +EVA++V GV++L + Q HR++ + +
Sbjct: 88 EDTPYTFEDVKEMFNEEVARIVDGVTKLKKVKYRSKEEQQAENHRKLFIAIAKDVRVILV 147
Query: 213 ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP-QI 271
+LADRLHNMRT+ A+P K +++ETL I+ LA RLG+ +K ELED + Q
Sbjct: 148 KLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHRLGINTIKWELEDTALRYIDNVQY 207
Query: 272 FR 273
FR
Sbjct: 208 FR 209
>sp|P0A0E9|RELA_STAAW GTP pyrophosphokinase OS=Staphylococcus aureus (strain MW2) GN=relA
PE=3 SV=1
Length = 736
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 514 WLYKE----------TGNKLQSISSMDESDIEASSS 539
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 99/182 (54%), Gaps = 15/182 (8%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E V K+ A AH GQFRK G PY+ H I IL + + T+VAG LHDV+
Sbjct: 33 EYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGILTEM-----RLDGPTIVAGFLHDVI 87
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRRINV---NQGTLGHE 212
+D + ++E F +EVA++V GV++L + Q HR++ + +
Sbjct: 88 EDTPYTFEDVKEMFNEEVARIVDGVTKLKKVKYRSKEEQQAENHRKLFIAIAKDVRVILV 147
Query: 213 ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP-QI 271
+LADRLHNMRT+ A+P K +++ETL I+ LA RLG+ +K ELED + Q
Sbjct: 148 KLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHRLGINTIKWELEDTALRYIDNVQY 207
Query: 272 FR 273
FR
Sbjct: 208 FR 209
>sp|P0A0F0|RELA_STAAU GTP pyrophosphokinase OS=Staphylococcus aureus GN=relA PE=3 SV=1
Length = 736
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 514 WLYKE----------TGNKLQSISSMDESDIEASSS 539
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 99/182 (54%), Gaps = 15/182 (8%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E V K+ A AH GQFRK G PY+ H I IL + + T+VAG LHDV+
Sbjct: 33 EYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGILTEM-----RLDGPTIVAGFLHDVI 87
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRRINV---NQGTLGHE 212
+D + ++E F +EVA++V GV++L + Q HR++ + +
Sbjct: 88 EDTPYTFEDVKEMFNEEVARIVDGVTKLKKVKYRSKEEQQAENHRKLFIAIAKDVRVILV 147
Query: 213 ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP-QI 271
+LADRLHNMRT+ A+P K +++ETL I+ LA RLG+ +K ELED + Q
Sbjct: 148 KLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHRLGINTIKWELEDTALRYIDNVQY 207
Query: 272 FR 273
FR
Sbjct: 208 FR 209
>sp|Q6G8T5|RELA_STAAS GTP pyrophosphokinase OS=Staphylococcus aureus (strain MSSA476)
GN=relA PE=3 SV=1
Length = 736
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 514 WLYKE----------TGNKLQSISSMDESDIEASSS 539
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 99/182 (54%), Gaps = 15/182 (8%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E V K+ A AH GQFRK G PY+ H I IL + + T+VAG LHDV+
Sbjct: 33 EYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGILTEM-----RLDGPTIVAGFLHDVI 87
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRRINV---NQGTLGHE 212
+D + ++E F +EVA++V GV++L + Q HR++ + +
Sbjct: 88 EDTPYTFEDVKEMFNEEVARIVDGVTKLKKVKYRSKEEQQAENHRKLFIAIAKDVRVILV 147
Query: 213 ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP-QI 271
+LADRLHNMRT+ A+P K +++ETL I+ LA RLG+ +K ELED + Q
Sbjct: 148 KLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHRLGINTIKWELEDTALRYIDNVQY 207
Query: 272 FR 273
FR
Sbjct: 208 FR 209
>sp|Q99TL8|RELA_STAAN GTP pyrophosphokinase OS=Staphylococcus aureus (strain N315)
GN=relA PE=1 SV=2
Length = 736
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 514 WLYKE----------TGNKLQSISSMDESDIEASSS 539
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 99/182 (54%), Gaps = 15/182 (8%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E V K+ A AH GQFRK G PY+ H I IL + + T+VAG LHDV+
Sbjct: 33 EYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGILTEM-----RLDGPTIVAGFLHDVI 87
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRRINV---NQGTLGHE 212
+D + ++E F +EVA++V GV++L + Q HR++ + +
Sbjct: 88 EDTPYTFEDVKEMFNEEVARIVDGVTKLKKVKYRSKEEQQAENHRKLFIAIAKDVRVILV 147
Query: 213 ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP-QI 271
+LADRLHNMRT+ A+P K +++ETL I+ LA RLG+ +K ELED + Q
Sbjct: 148 KLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHRLGINTIKWELEDTALRYIDNVQY 207
Query: 272 FR 273
FR
Sbjct: 208 FR 209
>sp|Q931Q4|RELA_STAAM GTP pyrophosphokinase OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=relA PE=3 SV=2
Length = 736
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 514 WLYKE----------TGNKLQSISSMDESDIEASSS 539
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
Score = 109 bits (273), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 98/182 (53%), Gaps = 15/182 (8%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E V K+ A AH GQFRK G PY+ H I IL + + T+VAG LHDV+
Sbjct: 33 EYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGILTEM-----RLDGPTIVAGFLHDVI 87
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRRINV---NQGTLGHE 212
+D + ++E F +EVA++V GV++L + Q HR++ + +
Sbjct: 88 EDTPYTFEDVKEMFNEEVARIVDGVTKLKKVKYRSKEEQQAENHRKLFIAIAKDVRVILV 147
Query: 213 ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP-QI 271
+LADRLHNMRT+ A+P K +++ETL I+ LA LG+ +K ELED + Q
Sbjct: 148 KLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHHLGINTIKWELEDTALRYIDNVQY 207
Query: 272 FR 273
FR
Sbjct: 208 FR 209
>sp|Q8CS97|RELA_STAES GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC
12228) GN=relA PE=3 SV=1
Length = 729
Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 86/145 (59%), Gaps = 19/145 (13%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM ++ +++D A+R++V +I CY+ L +VH L
Sbjct: 238 INGRPKHIYSIYRKMIKQKKQFDQIFDLLAIRIIVN---------SINDCYATLGLVHTL 288
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MHE AEHG+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTHEMHEIAEHGVAAHWAYKE 348
Query: 519 TG----------NKLQSISSMDESD 533
NKL + + E+D
Sbjct: 349 GKTVNQKTQDFQNKLNWLKELAETD 373
Score = 111 bits (278), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 99/182 (54%), Gaps = 15/182 (8%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E V K+ A AH GQFRK G PY+ H I IL + + T+VAG LHDV+
Sbjct: 26 EYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGILTEM-----RLDGPTIVAGFLHDVI 80
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRRINV---NQGTLGHE 212
+D + +++ F +E+A++V GV++L + Q HR++ + +
Sbjct: 81 EDTSYTFEDVKDMFNEEIARIVDGVTKLKKVKYRSKEEQQAENHRKLFIAIAKDVRVILV 140
Query: 213 ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP-QI 271
+LADRLHNMRT+ A+P K +++ETL I+ LA RLG+ +K ELED + Q
Sbjct: 141 KLADRLHNMRTLKAMPREKQVRISKETLEIYAPLAHRLGINTIKWELEDTALRYIDSVQY 200
Query: 272 FR 273
FR
Sbjct: 201 FR 202
>sp|Q5HNR8|RELA_STAEQ GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=relA PE=3 SV=1
Length = 729
Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 86/145 (59%), Gaps = 19/145 (13%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R K +YSI+ KM ++ +++D A+R++V +I CY+ L +VH L
Sbjct: 238 INGRPKHIYSIYRKMIKQKKQFDQIFDLLAIRIIVN---------SINDCYATLGLVHTL 288
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MHE AEHG+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTHEMHEIAEHGVAAHWAYKE 348
Query: 519 TG----------NKLQSISSMDESD 533
NKL + + E+D
Sbjct: 349 GKTVNQKTQDFQNKLNWLKELAETD 373
Score = 111 bits (278), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 99/182 (54%), Gaps = 15/182 (8%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E V K+ A AH GQFRK G PY+ H I IL + + T+VAG LHDV+
Sbjct: 26 EYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGILTEM-----RLDGPTIVAGFLHDVI 80
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRRINV---NQGTLGHE 212
+D + +++ F +E+A++V GV++L + Q HR++ + +
Sbjct: 81 EDTSYTFEDVKDMFNEEIARIVDGVTKLKKVKYRSKEEQQAENHRKLFIAIAKDVRVILV 140
Query: 213 ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP-QI 271
+LADRLHNMRT+ A+P K +++ETL I+ LA RLG+ +K ELED + Q
Sbjct: 141 KLADRLHNMRTLKAMPREKQVRISKETLEIYAPLAHRLGINTIKWELEDTALRYIDSVQY 200
Query: 272 FR 273
FR
Sbjct: 201 FR 202
>sp|P0AG23|RELA_SHIFL GTP pyrophosphokinase OS=Shigella flexneri GN=relA PE=3 SV=1
Length = 744
Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K +YSI+ KM++K++ +++D RA+R+V +Q CY+ L
Sbjct: 244 GVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIV---------AERLQDCYAALG 294
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH + + EFDDY+ NPKP+GYQS+HT V GP G +E+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAH 354
Query: 514 WLYKE 518
W YKE
Sbjct: 355 WKYKE 359
Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 15/142 (10%)
Query: 149 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH-------RR 201
+DT+ A +L + D S + E G V L+ GV ++ I QL H +
Sbjct: 73 IDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQV 132
Query: 202 INVNQGTLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 253
NV + L + LA+R+ ++R + P + A+E I+ LA+RLG+
Sbjct: 133 DNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIG 192
Query: 254 ALKAELEDLCFAVLQPQIFRKM 275
LK ELED CF L P ++++
Sbjct: 193 QLKWELEDYCFRYLHPTEYKRI 214
>sp|P0AG20|RELA_ECOLI GTP pyrophosphokinase OS=Escherichia coli (strain K12) GN=relA PE=1
SV=1
Length = 744
Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K +YSI+ KM++K++ +++D RA+R+V +Q CY+ L
Sbjct: 244 GVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIV---------AERLQDCYAALG 294
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH + + EFDDY+ NPKP+GYQS+HT V GP G +E+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAH 354
Query: 514 WLYKE 518
W YKE
Sbjct: 355 WKYKE 359
Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 15/142 (10%)
Query: 149 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH-------RR 201
+DT+ A +L + D S + E G V L+ GV ++ I QL H +
Sbjct: 73 IDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQV 132
Query: 202 INVNQGTLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 253
NV + L + LA+R+ ++R + P + A+E I+ LA+RLG+
Sbjct: 133 DNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIG 192
Query: 254 ALKAELEDLCFAVLQPQIFRKM 275
LK ELED CF L P ++++
Sbjct: 193 QLKWELEDYCFRYLHPTEYKRI 214
>sp|P0AG21|RELA_ECOL6 GTP pyrophosphokinase OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=relA PE=3 SV=1
Length = 744
Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K +YSI+ KM++K++ +++D RA+R+V +Q CY+ L
Sbjct: 244 GVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIV---------AERLQDCYAALG 294
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH + + EFDDY+ NPKP+GYQS+HT V GP G +E+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAH 354
Query: 514 WLYKE 518
W YKE
Sbjct: 355 WKYKE 359
Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 15/142 (10%)
Query: 149 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH-------RR 201
+DT+ A +L + D S + E G V L+ GV ++ I QL H +
Sbjct: 73 IDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQV 132
Query: 202 INVNQGTLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 253
NV + L + LA+R+ ++R + P + A+E I+ LA+RLG+
Sbjct: 133 DNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIG 192
Query: 254 ALKAELEDLCFAVLQPQIFRKM 275
LK ELED CF L P ++++
Sbjct: 193 QLKWELEDYCFRYLHPTEYKRI 214
>sp|P0AG22|RELA_ECO57 GTP pyrophosphokinase OS=Escherichia coli O157:H7 GN=relA PE=3 SV=1
Length = 744
Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ + R K +YSI+ KM++K++ +++D RA+R+V +Q CY+ L
Sbjct: 244 GVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIV---------AERLQDCYAALG 294
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
IVH + + EFDDY+ NPKP+GYQS+HT V GP G +E+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAH 354
Query: 514 WLYKE 518
W YKE
Sbjct: 355 WKYKE 359
Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 15/142 (10%)
Query: 149 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH-------RR 201
+DT+ A +L + D S + E G V L+ GV ++ I QL H +
Sbjct: 73 IDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQV 132
Query: 202 INVNQGTLGHEE--------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 253
NV + L + LA+R+ ++R + P + A+E I+ LA+RLG+
Sbjct: 133 DNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIG 192
Query: 254 ALKAELEDLCFAVLQPQIFRKM 275
LK ELED CF L P ++++
Sbjct: 193 QLKWELEDYCFRYLHPTEYKRI 214
>sp|O54408|RELA_BACSU GTP pyrophosphokinase OS=Bacillus subtilis (strain 168) GN=relA
PE=3 SV=3
Length = 734
Score = 124 bits (311), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
++ S R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L
Sbjct: 233 NIKADFSGRPKHIYSIYRKMVLQNKQFNEIYDLLAVRILVN---------SIKDCYAVLG 283
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MHE AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTFEMHEIAEYGVAAH 343
Query: 514 WLYKE 518
W YKE
Sbjct: 344 WAYKE 348
Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 103/186 (55%), Gaps = 24/186 (12%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAML--IPSSGKRAVDTVVAGILHDVV 161
V+KA +A+ AH Q+RK+G+PY+ H I IL L PS T+ G LHDVV
Sbjct: 28 VEKAYLYAEDAHREQYRKSGEPYIIHPIQVAGILVDLEMDPS-------TIAGGFLHDVV 80
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRRINVNQGTLGHE--- 212
+D +L ++E F +EVA LV GV++L I Q HR++ V + +
Sbjct: 81 EDTDVTLDDLKEAFSEEVAMLVDGVTKLGKIKYKSQEEQQAENHRKMFV---AMAQDIRV 137
Query: 213 ---ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 269
+LADRLHNMRT+ LP K R ++ ETL I+ LA RLG+ +K ELED L P
Sbjct: 138 ILIKLADRLHNMRTLKHLPQEKQRRISNETLEIFAPLAHRLGISKIKWELEDTALRYLNP 197
Query: 270 QIFRKM 275
Q + ++
Sbjct: 198 QQYYRI 203
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 758 EVVIVCWPNGEIMRLRSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 813
++V V P G+++ L SGS D + ++ E G + VNG++V + +L+ GDIVE+
Sbjct: 392 DMVYVFTPKGDVIELPSGSVPIDFSYRIHSEIGNKTIGAKVNGKMVTLDHKLRTGDIVEI 451
>sp|P55133|RELA_PHOAS GTP pyrophosphokinase OS=Photobacterium angustum (strain S14 / CCUG
15956) GN=relA PE=3 SV=1
Length = 744
Score = 123 bits (308), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 87/133 (65%), Gaps = 9/133 (6%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
+ R K +YSI+ KM++K + +++D RA+R+V + +Q CY+ L +VH
Sbjct: 248 VQGRPKHIYSIWRKMQKKSLEFDELFDVRAVRIVAEE---------LQDCYAALGVVHTK 298
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518
+ + EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT++MHE +E G+AAHW YKE
Sbjct: 299 YRHLPKEFDDYVANPKPNGYQSIHTVVLGPEGKTIEIQIRTKQMHEESELGVAAHWKYKE 358
Query: 519 TGNKLQSISSMDE 531
+ S+ DE
Sbjct: 359 GTASGGAQSAYDE 371
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 74/146 (50%), Gaps = 15/146 (10%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL-------------- 195
DT++A +L+ +V+ C S +++EE+ + LV GV ++ I+QL
Sbjct: 73 DTLIAALLYPLVEGGCYSTDALKEEYSGTILHLVQGVEQMCAISQLKSTAEETAQAAQVD 132
Query: 196 -LRRHRRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 254
+RR V+ +LA+R+ N+R + P RA AQE I+ LA+RLG+
Sbjct: 133 NIRRMLLSMVDDFRCVVIKLAERICNLREVKDQPDEVRRAAAQECANIYAPLANRLGIGQ 192
Query: 255 LKAELEDLCFAVLQPQIFRKMRADLA 280
LK E+ED F P ++++ L+
Sbjct: 193 LKWEIEDYAFRYQHPDTYKQIAKQLS 218
>sp|P44644|RELA_HAEIN GTP pyrophosphokinase OS=Haemophilus influenzae (strain ATCC 51907
/ DSM 11121 / KW20 / Rd) GN=relA PE=3 SV=1
Length = 743
Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 89/136 (65%), Gaps = 11/136 (8%)
Query: 396 EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIV 455
+V + R K +YSI+ KM++K + +YD RA+R++V +Q CY+ L IV
Sbjct: 248 QVEVYGRPKHIYSIWRKMQKKHLEFSGLYDVRAVRIIV---------QKLQDCYTALGIV 298
Query: 456 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 515
H + + EFDDY+ NPKP+GYQS+HT V G G +EVQIRTQ+MH+ AE G+AAHW
Sbjct: 299 HTQFKHLPKEFDDYVANPKPNGYQSIHTVVLGKGGKPIEVQIRTQQMHDDAELGMAAHWK 358
Query: 516 YKETGNKLQSISSMDE 531
YKE GN S+S+ +E
Sbjct: 359 YKE-GNT-GSMSAYEE 372
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 14/140 (10%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH-----RRINV 204
+T++ +L +V + S++E+FG ++ KL+ GV + I QL H + NV
Sbjct: 77 ETLLTAMLFPIVANKLTDWESLKEKFGAKITKLLKGVLEMDNIRQLNASHSANALQVDNV 136
Query: 205 NQGTLGHEE--------LADRLHNMRTIYALPPAKARAVA-QETLLIWCSLASRLGLWAL 255
+ L + LA+R+ +R + + +A +E I+ LA+RLG+ L
Sbjct: 137 RRMLLAMVDDFRCVIIKLAERITFLRDAEHRCAEEDKVLAVKECSYIYAPLANRLGIGQL 196
Query: 256 KAELEDLCFAVLQPQIFRKM 275
K ELED CF L P+ +R +
Sbjct: 197 KWELEDYCFRYLHPEQYRAI 216
>sp|P66015|RELA_MYCBO Probable GTP pyrophosphokinase OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=relA PE=3 SV=1
Length = 790
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 107/187 (57%), Gaps = 12/187 (6%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q+A A + H Q R++GDPY+TH + ILA L + T+VA
Sbjct: 75 YPKADLSILQRAYEVADQRHASQLRQSGDPYITHPLAVANILAELGMDT-----TTLVAA 129
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYI-------NQLLRRHRRINVNQGT 208
+LHD V+D +L ++ EEFG+EV LV GV++L + + +R+
Sbjct: 130 LLHDTVEDTGYTLEALTEEFGEEVGHLVDGVTKLDRVVLGSAAEGETIRKMITAMARDPR 189
Query: 209 LGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQ 268
+ ++ADRLHNMRT+ LPP K A+ETL + LA RLG+ ++K ELEDL FA+L
Sbjct: 190 VLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMASVKWELEDLSFAILH 249
Query: 269 PQIFRKM 275
P+ + ++
Sbjct: 250 PKKYEEI 256
Score = 110 bits (276), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 79/137 (57%), Gaps = 9/137 (6%)
Query: 386 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 445
+++T ++ T+ R K +SI+ KM K ++D +R++ + I
Sbjct: 278 IVNTLTASKIKATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCDE---------I 328
Query: 446 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 505
+ CY+ + +VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT+ MH
Sbjct: 329 RDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTRDMHRT 388
Query: 506 AEHGLAAHWLYKETGNK 522
AE+G+AAHW YKE +
Sbjct: 389 AEYGIAAHWRYKEAKGR 405
Score = 35.0 bits (79), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 760 VIVCWPNGEIMRLRSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 813
+ V P G+++ L +GST D A V E G + VNG+LV +L++G++VEV
Sbjct: 452 IFVFTPKGDVITLPTGSTPVDFAYAVHTEVGHRCIGARVNGRLVALERKLENGEVVEV 509
>sp|P66014|RELA_MYCTU Bifunctional (p)ppGpp synthase/hydrolase relA OS=Mycobacterium
tuberculosis GN=relA PE=1 SV=2
Length = 738
Score = 121 bits (303), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 107/187 (57%), Gaps = 12/187 (6%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q+A A + H Q R++GDPY+TH + ILA L + T+VA
Sbjct: 23 YPKADLSILQRAYEVADQRHASQLRQSGDPYITHPLAVANILAELGMDT-----TTLVAA 77
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYI-------NQLLRRHRRINVNQGT 208
+LHD V+D +L ++ EEFG+EV LV GV++L + + +R+
Sbjct: 78 LLHDTVEDTGYTLEALTEEFGEEVGHLVDGVTKLDRVVLGSAAEGETIRKMITAMARDPR 137
Query: 209 LGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQ 268
+ ++ADRLHNMRT+ LPP K A+ETL + LA RLG+ ++K ELEDL FA+L
Sbjct: 138 VLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMASVKWELEDLSFAILH 197
Query: 269 PQIFRKM 275
P+ + ++
Sbjct: 198 PKKYEEI 204
Score = 110 bits (275), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 79/137 (57%), Gaps = 9/137 (6%)
Query: 386 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 445
+++T ++ T+ R K +SI+ KM K ++D +R++ + I
Sbjct: 226 IVNTLTASKIKATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCDE---------I 276
Query: 446 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 505
+ CY+ + +VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT+ MH
Sbjct: 277 RDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTRDMHRT 336
Query: 506 AEHGLAAHWLYKETGNK 522
AE+G+AAHW YKE +
Sbjct: 337 AEYGIAAHWRYKEAKGR 353
Score = 35.0 bits (79), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 760 VIVCWPNGEIMRLRSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 813
+ V P G+++ L +GST D A V E G + VNG+LV +L++G++VEV
Sbjct: 400 IFVFTPKGDVITLPTGSTPVDFAYAVHTEVGHRCIGARVNGRLVALERKLENGEVVEV 457
>sp|P43811|SPOT_HAEIN Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121
/ KW20 / Rd) GN=spoT PE=3 SV=1
Length = 677
Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 102/176 (57%), Gaps = 14/176 (7%)
Query: 110 FAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLG 169
A+ AH GQFR +G+PY+TH + I+A L + V+A +LHDV++D +
Sbjct: 2 IARDAHEGQFRSSGEPYITHPVAVASIIAQLHLDH-----EAVMAALLHDVIEDTPYTEE 56
Query: 170 SIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLGHE--------ELADRLHN 220
++EEFG VA++V GVS+L + R+ ++ N + L +LADR HN
Sbjct: 57 QLKEEFGASVAEIVDGVSKLDKLKFRTRQEAQVENFRKMILAMTRDIRVVLIKLADRTHN 116
Query: 221 MRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 276
MRT+ +L P K R +A+ETL I+C LA RLG+ +K ELEDL F + P + ++
Sbjct: 117 MRTLGSLRPDKRRRIAKETLEIYCPLAHRLGIEHIKNELEDLSFQAMHPHRYEVLK 172
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 68/119 (57%), Gaps = 9/119 (7%)
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K LY I+ KMR KD H + D A RV+V + + CY +L +H L+ P
Sbjct: 209 REKHLYKIYQKMRIKDQEFHSIMDIYAFRVIVKN---------VDDCYRVLGQMHNLYKP 259
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 520
G DYI PK +GYQSL T++ GP G +EV I T+ M + AE G+ AHW+YKE G
Sbjct: 260 RPGRVKDYIAVPKANGYQSLQTSMIGPKGVPVEVHIHTEDMEQVAEMGITAHWVYKENG 318
>sp|O67012|SPOT_AQUAE Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Aquifex
aeolicus (strain VF5) GN=spoT PE=3 SV=1
Length = 696
Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 104/183 (56%), Gaps = 15/183 (8%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E++Q+A FAK H Q RKTG+PY+ H ++ LA L +T++A +LHD +
Sbjct: 25 EEIQRAYEFAKEKHGEQKRKTGEPYIIHPLNVALKLAELGMDH-----ETIIAALLHDTL 79
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE-------- 213
+D + I+E FG+ VAKLV GV+++ I + + N + L E
Sbjct: 80 EDTDTTYEEIKERFGERVAKLVEGVTKIGKIK--YKSEQAENYRKLILATAEDPRVILLK 137
Query: 214 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 273
L+DRL N++T++ K + +A+ET+ I+ LA RLG+W++K ELED F L P+ +
Sbjct: 138 LSDRLDNVKTLWVFREEKRKKIAKETMEIYAPLAHRLGVWSIKNELEDWAFKYLYPEEYE 197
Query: 274 KMR 276
K+R
Sbjct: 198 KVR 200
Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 77/128 (60%), Gaps = 9/128 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+E + R K YSI+ K RRK + + V+D +R++V + CY++L
Sbjct: 230 GIEAEIKYRSKHYYSIWEKTRRKGIRLEDVHDILGVRIIVN---------TVPECYTVLG 280
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
I+H L+ P+ G+F DYI PKP+ YQSLHT V G +E QIRT +MHE AE G+A+H
Sbjct: 281 IIHSLFRPVPGKFKDYISLPKPNLYQSLHTTVIADKGKLVEFQIRTWEMHERAEKGIASH 340
Query: 514 WLYKETGN 521
W YKE N
Sbjct: 341 WAYKEGKN 348
Score = 38.5 bits (88), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 746 KANGNPDSVVPG-------EVVIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLV 794
+ + NP V+ E V V P G+++ L GST D A K VG
Sbjct: 366 QGSTNPSEVLENLKSNLFFEEVFVFTPKGDLVVLPKGSTPVDLAYKIHTEVGNHCAGAKS 425
Query: 795 NGQLVLPNTELKDGDIVEV 813
NG++V N ELK GD+VE+
Sbjct: 426 NGRIVPLNYELKSGDVVEI 444
>sp|O34098|SPOT_SPICI Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Spiroplasma citri GN=spoT PE=3 SV=1
Length = 749
Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 110/194 (56%), Gaps = 14/194 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
+++QKA +A+ HHGQ R +G Y+ H + T LA + T++AG+LHDV+
Sbjct: 25 KEIQKAYEYAEEKHHGQVRNSGARYIIHPLWTTFFLA-----QWRMGPKTLIAGLLHDVL 79
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------QLLRRHRRINVNQGTLGHE 212
+D + ++E FG E+A LV GV+++SY Q LR+ +
Sbjct: 80 EDTPATFEELQELFGIEIANLVEGVTKVSYFAKENRTQIKAQYLRKLYLSMAKDIRVIIV 139
Query: 213 ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 272
+LADRLHN++TI L P + + +A+E+L I+ ++A RLG+ A+K E+ED+ F ++ P +
Sbjct: 140 KLADRLHNLKTIGYLKPERQQIIARESLEIYSAIAHRLGMKAVKQEIEDISFKIINPVQY 199
Query: 273 RKMRADLASMWSPR 286
K+ + L S R
Sbjct: 200 NKIVSLLESSNKER 213
Score = 107 bits (268), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 79/139 (56%), Gaps = 12/139 (8%)
Query: 383 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 442
K++LI+ M V + R KS+YSI+ KM + ++D A+R++
Sbjct: 225 KKILITEK---KMSVKVYGRSKSIYSIYRKMNQFGKNFDDIHDILAVRIITN-------- 273
Query: 443 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 502
++ CY +L VH+ + P++ F DYI PK + YQSLHT + DG EVQIRT++M
Sbjct: 274 -SVDDCYKVLGFVHQHYTPLNNRFKDYIATPKHNLYQSLHTTIVADDGLIFEVQIRTEEM 332
Query: 503 HEYAEHGLAAHWLYKETGN 521
E AE G+AAHW YKE N
Sbjct: 333 DELAEQGVAAHWRYKEGEN 351
Score = 35.0 bits (79), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 759 VVIVCWPNGEIMRLRSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEVR 814
++ V PNG+++ L GST D A K+ E G+ + +NG +T LK GD+V+++
Sbjct: 408 LIYVLTPNGKVVTLPFGSTVLDFAYKIHSEIGEKTIGAKINGLFSPISTVLKSGDVVDIK 467
>sp|O52177|RELA_MYXXA GTP pyrophosphokinase OS=Myxococcus xanthus GN=relA PE=3 SV=1
Length = 757
Score = 117 bits (292), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 76/125 (60%), Gaps = 9/125 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ +S R K +YSI+ K++ + + +++D A R++ P CY L
Sbjct: 249 GLKGEVSGRFKHVYSIYKKIKSQGIDFDQIHDIIAFRII---------APTAPSCYEALG 299
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+VH +W P+ G F D+I PKP+ YQSLHT + GP +EVQIRT +MH+ AE G+AAH
Sbjct: 300 LVHEMWKPVPGRFKDFIAIPKPNMYQSLHTTIIGPLSERVEVQIRTSEMHKIAEEGIAAH 359
Query: 514 WLYKE 518
W YKE
Sbjct: 360 WKYKE 364
Score = 114 bits (284), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 106/197 (53%), Gaps = 17/197 (8%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA ++ + H GQ RK+G+PYL H + IL L K ++V G+LHD ++D
Sbjct: 41 IKKAYVYSAKVHQGQLRKSGEPYLVHPLEVAGILGEL-----KLDEASIVTGLLHDTIED 95
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYIN---QLLRRHRRI-NVNQGTLGHEE------ 213
+ + E FG EVA LV GV++LS + L + ++ N + + +
Sbjct: 96 TLATEEELTELFGSEVAHLVDGVTKLSKFSASASLSQEEKQAENFRKMIIAMAQDIRVIL 155
Query: 214 --LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 271
LADR HNMRT+ + K +AQETL I+ LA+RLG+ +K ELEDL F ++PQ
Sbjct: 156 VKLADRTHNMRTLDHMSEEKQARIAQETLDIYAPLANRLGISWIKTELEDLSFRYVKPQE 215
Query: 272 FRKMRADLASMWSPRNR 288
F ++A L R +
Sbjct: 216 FFALQAKLNKRKKEREK 232
>sp|P52560|RELA_STRCO GTP pyrophosphokinase OS=Streptomyces coelicolor (strain ATCC
BAA-471 / A3(2) / M145) GN=relA PE=3 SV=1
Length = 847
Score = 116 bits (291), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 100/177 (56%), Gaps = 12/177 (6%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
Q+++A A+R H GQ RK+GDPY+TH + ILA L T++AG+LHD V+
Sbjct: 126 QIERAYQVAERWHRGQKRKSGDPYITHPLAVTTILAELGMDPA-----TLMAGLLHDTVE 180
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYIN-------QLLRRHRRINVNQGTLGHEELA 215
D L + +FGD V LV GV++L + + +R+ + +LA
Sbjct: 181 DTEYGLEDLRRDFGDVVTLLVDGVTKLDKVKFGEAAQAETVRKMVVAMAKDPRVLVIKLA 240
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 272
DRLHNMRT+ L K A+ETL I+ LA RLG+ +K ELEDL FA+L P+++
Sbjct: 241 DRLHNMRTMRYLKREKQEKKARETLEIYAPLAHRLGMNTIKWELEDLAFAILYPKMY 297
Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 85/153 (55%), Gaps = 14/153 (9%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
++ T++ R K YS++ KM + ++YD +RV+V ++ CY+ L
Sbjct: 331 IKATVTGRPKHYYSVYQKMIVRGRDFAEIYDLVGIRVLVD---------TVRDCYAALGT 381
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH W P+ G F DYI PK + YQSLHT V GP G +E+QIRT MH AE+G+AAHW
Sbjct: 382 VHARWNPVPGRFKDYIAMPKFNMYQSLHTTVIGPGGKPVELQIRTFDMHRRAEYGIAAHW 441
Query: 515 LYKETGNKLQSISSMDESDIEASSSLSKDTDDH 547
YK+ ++++ + +A S K DDH
Sbjct: 442 KYKQ-----EAVAGASKVRTDAPKSSGKSKDDH 469
Score = 35.0 bits (79), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 64/156 (41%), Gaps = 19/156 (12%)
Query: 665 PTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVSRRSSDSVAPTSMEASIN---NKVRL 721
P +QI +EY ++ + V R+ AP S S + N +
Sbjct: 419 PVELQIRTFDMHRRAEYGIAAHWKYKQEAVAGASKVRTD---APKSSGKSKDDHLNDMAW 475
Query: 722 LRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADA 781
LR +L W+++ +S + V V P G+++ L +G+T D
Sbjct: 476 LRQLLDWQKETEDPGEFLESLRFDLSRNE---------VFVFTPKGDVIALPAGATPVDF 526
Query: 782 AMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 813
A V E G + VNG+LV + L +GD+VEV
Sbjct: 527 AYAVHTEVGHRTIGARVNGRLVPLESTLDNGDLVEV 562
>sp|O51216|SPOT_BORBU Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP
102532 / DSM 4680) GN=spoT PE=3 SV=1
Length = 667
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 86/140 (61%), Gaps = 15/140 (10%)
Query: 380 ALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGT 439
++EKEL S G+E ++ R K YSIF KM+ + + +++D +R++ +
Sbjct: 236 SIEKELQKS-----GIEAEITVRSKHFYSIFRKMQTRTNKLTQIFDTLGIRIICKKQ--- 287
Query: 440 LHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGP-DGSALEVQIR 498
+ CY +L+IVHR+W PI G DYI +PK + YQSLHT V+ P D +E+QIR
Sbjct: 288 ------KECYEILEIVHRVWKPIPGRLKDYIASPKENKYQSLHTTVRIPEDNQLIEIQIR 341
Query: 499 TQKMHEYAEHGLAAHWLYKE 518
T++M A +G+AAHW+YKE
Sbjct: 342 TEEMDRIANYGVAAHWIYKE 361
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 110/207 (53%), Gaps = 14/207 (6%)
Query: 99 FNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILH 158
F + + KA+ A++ H+GQ+R++G+PY+ H I LA + +AG+LH
Sbjct: 35 FERKSIFKALEIAEQLHYGQYRESGEPYIIHPIMVSLFLAKF-----QLDFKATIAGLLH 89
Query: 159 DVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQG---TLGHE--- 212
DV++D I +EF +E+ L+ GV+++ ++ R + N + H+
Sbjct: 90 DVLEDTNVEKEEIVKEFDEEILSLIDGVTKIHDLHNKTRSIKEANTISKMFFAMTHDIRI 149
Query: 213 ---ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 269
+LAD+LHNM T+ LP + +A++ L + +A RLG+ +LK LEDL F L P
Sbjct: 150 IIIKLADKLHNMTTLSYLPKNRQDRIAKDCLSTYVPIAERLGISSLKTYLEDLSFKHLYP 209
Query: 270 QIFRKMRADLASMWSPRNRVGYSRRIT 296
+ +++++ L+ R + Y +++
Sbjct: 210 KDYKEIKNFLSETKIEREKKLYKGKLS 236
>sp|O87331|RELA_CORGL GTP pyrophosphokinase OS=Corynebacterium glutamicum (strain ATCC
13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
GN=relA PE=3 SV=2
Length = 760
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 113/200 (56%), Gaps = 12/200 (6%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + + +++A A+R H G RK+GDPY+TH + I A + + T+VA
Sbjct: 47 HPRADVQVLERAYDTAERLHDGVIRKSGDPYITHPLAVATIAAEIGMDT-----TTLVAA 101
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN-------QLLRRHRRINVNQGT 208
+LHD V+D SL + +FG+EVA+LV GV++L + + +R+
Sbjct: 102 LLHDTVEDTDYSLDDLTRDFGEEVARLVDGVTKLDKVALGAAAEAETIRKMIVAMSQDPR 161
Query: 209 LGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQ 268
+ ++ADRLHNMRT+ LPP K A++TL + LA RLG+ ++K ELEDL FA+L
Sbjct: 162 VLVIKVADRLHNMRTMRFLPPEKQAKKARQTLEVIAPLAHRLGMASVKWELEDLSFAILY 221
Query: 269 PQIFRKMRADLASMWSPRNR 288
P+ + ++ +A R+R
Sbjct: 222 PKKYEEIVRLVADRAPSRDR 241
Score = 99.0 bits (245), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 66/118 (55%), Gaps = 9/118 (7%)
Query: 402 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 461
R K +SI+ KM + ++D +R++V + N CY+ + +VH L+
Sbjct: 266 RPKHYWSIYQKMIVRGRDFDDIFDLVGIRILVDNVNN---------CYAAIGVVHSLFNA 316
Query: 462 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET 519
+ G F DYI P+ YQSLHT V GP G LEVQ RT MH AE G+AAHW YKET
Sbjct: 317 LPGRFKDYISAPRFGVYQSLHTTVMGPGGKPLEVQARTHDMHYNAEFGIAAHWRYKET 374
Score = 33.9 bits (76), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 760 VIVCWPNGEIMRLRSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 813
+ V P G+++ L ST D A V E G + +NG+LV T+LK GD VEV
Sbjct: 420 IFVFTPKGDVVNLPVNSTPVDFAYAVHTEVGHRCIGAKINGKLVALETKLKSGDRVEV 477
>sp|O85709|RELA_STRAT GTP pyrophosphokinase OS=Streptomyces antibioticus GN=relA PE=3
SV=1
Length = 841
Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 99/177 (55%), Gaps = 12/177 (6%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
Q++KA A+R H GQ RK+GDPY+TH + ILA L T++AG+LHD +
Sbjct: 123 QIEKAYQVAERWHRGQKRKSGDPYITHPLAVTTILAELGMDPA-----TLMAGLLHDSRE 177
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYIN-------QLLRRHRRINVNQGTLGHEELA 215
D L + +FGD V LV GV++L + + +R+ + +LA
Sbjct: 178 DTEYGLDDLRRDFGDVVGLLVDGVTKLDKVKFGEAAQAETVRKMVVAMAKDPRVLVIKLA 237
Query: 216 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 272
DRLHNMRT+ L K A+ETL I+ LA RLG+ +K ELEDL FA+L P+++
Sbjct: 238 DRLHNMRTMRYLKREKQEKKARETLEIYAPLAHRLGMNTIKWELEDLAFAILYPKMY 294
Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 74/124 (59%), Gaps = 9/124 (7%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
++ T++ R K YS++ K+ + ++YD +RV+V ++ CY+ L
Sbjct: 328 IKATVTGRPKHYYSVYQKIIVRGRDFAEIYDLVGIRVLVD---------TVRDCYAALGT 378
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
VH W P+ G F DYI PK + YQSLHT V GP+G +E+QIRT MH AE+G+AAHW
Sbjct: 379 VHARWNPVPGRFKDYIAMPKFNMYQSLHTTVIGPNGKPVELQIRTFDMHRRAEYGIAAHW 438
Query: 515 LYKE 518
YK+
Sbjct: 439 KYKQ 442
Score = 34.3 bits (77), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 14/153 (9%)
Query: 665 PTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVSRRSSDSVAPTSMEASINNKVRLLRT 724
P +QI +EY ++ + V + S+ +D P + N + LR
Sbjct: 416 PVELQIRTFDMHRRAEYGIAAHWKYKQEAV-ARASKVRTDVPKPAKGKDDHLNDMAWLRQ 474
Query: 725 MLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMK 784
+L W+++ +S + V V P +++ L +G+T D A
Sbjct: 475 LLDWQKETEDPGEFLESLRFDLSRNE---------VFVFTPKSDVIALPAGATPVDFAYA 525
Query: 785 VGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 813
V E G + VNG+LV + L +GD+VEV
Sbjct: 526 VHTEVGHRTIGARVNGRLVPLESTLDNGDLVEV 558
>sp|P0AG26|SPOT_SHIFL Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Shigella flexneri GN=spoT PE=3 SV=1
Length = 702
Score = 113 bits (283), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 75/127 (59%), Gaps = 9/127 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K LYSI+ KM K+ H + D A RV+V D + CY +L
Sbjct: 228 GIPCRVSGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVNDSD---------TCYRVLG 278
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+H L+ P G DYI PK +GYQSLHT++ GP G +EVQIRT+ M + AE G+AAH
Sbjct: 279 QMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAH 338
Query: 514 WLYKETG 520
W YKE G
Sbjct: 339 WAYKEHG 345
Score = 113 bits (283), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 106/184 (57%), Gaps = 14/184 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
+++++A A+ AH GQ R +G+PY+TH + ILA + K +T++A +LHDV+
Sbjct: 21 KRLRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEM-----KLDYETLMAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------QLLRRHRRINVNQGTLGHE 212
+D + +E+ FG VA+LV GVS+L + + R+ V +
Sbjct: 76 EDTPATYQDMEQLFGKSVAELVEGVSKLDKLKFRDKKEAQAENFRKMIMAMVQDIRVILI 135
Query: 213 ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 272
+LADR HNMRT+ +L P K R +A+ETL I+ LA RLG+ +K ELE+L F L P +
Sbjct: 136 KLADRTHNMRTLGSLRPDKRRRIARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRY 195
Query: 273 RKMR 276
R ++
Sbjct: 196 RVIK 199
>sp|P0AG24|SPOT_ECOLI Bifunctional (p)ppGpp synthase/hydrolase SpoT OS=Escherichia coli
(strain K12) GN=spoT PE=1 SV=1
Length = 702
Score = 113 bits (283), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 75/127 (59%), Gaps = 9/127 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K LYSI+ KM K+ H + D A RV+V D + CY +L
Sbjct: 228 GIPCRVSGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVNDSD---------TCYRVLG 278
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+H L+ P G DYI PK +GYQSLHT++ GP G +EVQIRT+ M + AE G+AAH
Sbjct: 279 QMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAH 338
Query: 514 WLYKETG 520
W YKE G
Sbjct: 339 WAYKEHG 345
Score = 113 bits (283), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 106/184 (57%), Gaps = 14/184 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
+++++A A+ AH GQ R +G+PY+TH + ILA + K +T++A +LHDV+
Sbjct: 21 KRLRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEM-----KLDYETLMAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------QLLRRHRRINVNQGTLGHE 212
+D + +E+ FG VA+LV GVS+L + + R+ V +
Sbjct: 76 EDTPATYQDMEQLFGKSVAELVEGVSKLDKLKFRDKKEAQAENFRKMIMAMVQDIRVILI 135
Query: 213 ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 272
+LADR HNMRT+ +L P K R +A+ETL I+ LA RLG+ +K ELE+L F L P +
Sbjct: 136 KLADRTHNMRTLGSLRPDKRRRIARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRY 195
Query: 273 RKMR 276
R ++
Sbjct: 196 RVIK 199
>sp|P0AG25|SPOT_ECO57 Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Escherichia coli O157:H7 GN=spoT PE=3 SV=1
Length = 702
Score = 113 bits (283), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 75/127 (59%), Gaps = 9/127 (7%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ +S R K LYSI+ KM K+ H + D A RV+V D + CY +L
Sbjct: 228 GIPCRVSGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVNDSD---------TCYRVLG 278
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+H L+ P G DYI PK +GYQSLHT++ GP G +EVQIRT+ M + AE G+AAH
Sbjct: 279 QMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAH 338
Query: 514 WLYKETG 520
W YKE G
Sbjct: 339 WAYKEHG 345
Score = 113 bits (283), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 106/184 (57%), Gaps = 14/184 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
+++++A A+ AH GQ R +G+PY+TH + ILA + K +T++A +LHDV+
Sbjct: 21 KRLRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEM-----KLDYETLMAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------QLLRRHRRINVNQGTLGHE 212
+D + +E+ FG VA+LV GVS+L + + R+ V +
Sbjct: 76 EDTPATYQDMEQLFGKSVAELVEGVSKLDKLKFRDKKEAQAENFRKMIMAMVQDIRVILI 135
Query: 213 ELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 272
+LADR HNMRT+ +L P K R +A+ETL I+ LA RLG+ +K ELE+L F L P +
Sbjct: 136 KLADRTHNMRTLGSLRPDKRRRIARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRY 195
Query: 273 RKMR 276
R ++
Sbjct: 196 RVIK 199
>sp|Q54089|RELA_STREQ Bifunctional (p)ppGpp synthase/hydrolase RelA OS=Streptococcus
dysgalactiae subsp. equisimilis GN=relA PE=1 SV=1
Length = 739
Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 102/181 (56%), Gaps = 14/181 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA+ +A AH Q RK+G+PY+ H I ILA L + TV G LHDVV+D
Sbjct: 28 VKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAV-----TVACGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRL------SYINQLLRRHRRINVNQGT---LGHEEL 214
+L +IE +FG +V +V GV++L S+ QL HR++ + + +L
Sbjct: 83 TDITLDNIEFDFGKDVRDIVDGVTKLGKVEYKSHEEQLAENHRKMLMAMSKDIRVILVKL 142
Query: 215 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 274
ADRLHNMRT+ L K +++ET+ I+ LA RLG+ +K ELEDL F L F K
Sbjct: 143 ADRLHNMRTLKHLRKDKQERISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEFYK 202
Query: 275 M 275
+
Sbjct: 203 I 203
Score = 107 bits (268), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 78/125 (62%), Gaps = 10/125 (8%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ + R K +YSI+ KMR K +++D A+R V+ ++ Y+++
Sbjct: 233 GLFGDVYGRPKHIYSIYRKMRDKKKRFDQIFDLIAIRCVMETQSD---------VYAMVG 283
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
+H LW P+ G F DYI PK +GYQS+HT V GP G +E+QIRT++MH+ AE+G+AAH
Sbjct: 284 YIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGPKG-PIEIQIRTKEMHQVAEYGVAAH 342
Query: 514 WLYKE 518
W YK+
Sbjct: 343 WAYKK 347
>sp|Q9KNM2|SPOT_VIBCH Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Vibrio
cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba
N16961) GN=spoT PE=1 SV=1
Length = 705
Score = 110 bits (274), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 104/184 (56%), Gaps = 14/184 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++++ A+ AH GQ R +G+PY+ H + RILA + + ++T+ A +LHDV+
Sbjct: 21 EALRQSYVVARDAHEGQTRSSGEPYIIHPVAVARILAEM-----RLDLETLQAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLGHEE------- 213
+D + ++ FG VA+LV GVS+L + R+ + N + L +
Sbjct: 76 EDCDVTKEDLDAHFGSSVAELVDGVSKLDKLKFRDRKEAQAENFRKMVLAMVQDIRVILI 135
Query: 214 -LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 272
LADR NMRT+ AL P K R +A+ETL I+ LA RLG+ +K ELE+L F L P +
Sbjct: 136 KLADRTPNMRTLGALRPDKKRRIARETLEIYAPLAHRLGIHNIKTELEELGFEALYPNRY 195
Query: 273 RKMR 276
R ++
Sbjct: 196 RVLK 199
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 74/129 (57%), Gaps = 9/129 (6%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G+ + R K+L+SI++KM+ K+ H + D A R+VV + CY +L
Sbjct: 228 GLPARVVGREKNLFSIYNKMKTKEQRFHTIMDIYAFRIVVDTAD---------TCYRVLG 278
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
VH L+ P DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A+ G+AAH
Sbjct: 279 QVHSLYKPRPARMKDYIAVPKANGYQSLHTSMVGPHGVPVEVQIRTEDMDQMADKGVAAH 338
Query: 514 WLYKETGNK 522
W YK +
Sbjct: 339 WSYKANSER 347
>sp|Q8YG65|RSH_BRUME GTP pyrophosphokinase rsh OS=Brucella melitensis biotype 1 (strain
16M / ATCC 23456 / NCTC 10094) GN=rsh PE=1 SV=2
Length = 750
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 112/213 (52%), Gaps = 16/213 (7%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P N+ + KA +A + H Q R +GDPY +H + IL + T+ +
Sbjct: 16 PDVNEALLNKAYVYAMQKHRSQKRASGDPYFSHPLEVAAILTDMHLDEA-----TIAIAL 70
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLGHEE-- 213
LHD ++D + I++ FG E+ KLV G+++L ++ + ++ + N+ + L E
Sbjct: 71 LHDTIEDTTATRQEIDQLFGPEIGKLVEGLTKLKKLDLVSKKAVQAENLRKLLLAISEDV 130
Query: 214 ------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL 267
LADRLHNMRT+ + K +A+ET+ I+ LA R+G+ ++ ELE+L F +
Sbjct: 131 RVLLVKLADRLHNMRTLGVMREDKRLRIAEETMDIYAPLAGRMGMQDMREELEELAFRYI 190
Query: 268 QPQIFRKMRADLASMWSPRNRVGYSRRITTIVS 300
P +R + LA + +NR G ++I T +S
Sbjct: 191 NPDAWRAVTDRLAELLE-KNR-GLLQKIETDLS 221
Score = 100 bits (248), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 11/137 (8%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ ++ SR K +S+F KM K + ++ D RV+V +Q CY L
Sbjct: 228 GIKASVKSRQKKPWSVFRKMESKGLSFEQLSDIFGFRVMVD---------TVQDCYRALG 278
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
++H W + G F DYI PK + Y+S+HT + GP +E+QIRT++M E AE G+AAH
Sbjct: 279 LIHTTWSMVPGRFKDYISTPKQNDYRSIHTTIIGPSRQRIELQIRTREMDEIAEFGVAAH 338
Query: 514 WLYKETG--NKLQSISS 528
+YK+ G N IS+
Sbjct: 339 SIYKDRGSANNPHKIST 355
>sp|Q57E90|RSH_BRUAB GTP pyrophosphokinase rsh OS=Brucella abortus biovar 1 (strain
9-941) GN=rsh PE=1 SV=1
Length = 750
Score = 103 bits (258), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 112/213 (52%), Gaps = 16/213 (7%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P N+ + KA +A + H Q R +GDPY +H + IL + T+ +
Sbjct: 16 PDVNEALLNKAYVYAMQKHGSQKRASGDPYFSHPLEVAAILTDMHLDEA-----TIAIAL 70
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLGHEE-- 213
LHD ++D + I++ FG E+ KLV G+++L ++ + ++ + N+ + L E
Sbjct: 71 LHDTIEDTTATRQEIDQLFGPEIGKLVEGLTKLKKLDLVSKKAVQAENLRKLLLAISEDV 130
Query: 214 ------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL 267
LADRLHNMRT+ + K +A+ET+ I+ LA R+G+ ++ ELE+L F +
Sbjct: 131 RVLLVKLADRLHNMRTLGVMREDKRLRIAEETMDIYAPLAGRMGMQDMREELEELAFRYI 190
Query: 268 QPQIFRKMRADLASMWSPRNRVGYSRRITTIVS 300
P +R + LA + +NR G ++I T +S
Sbjct: 191 NPDAWRAVTDRLAELLE-KNR-GLLQKIETDLS 221
Score = 100 bits (248), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 11/137 (8%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ ++ SR K +S+F KM K + ++ D RV+V +Q CY L
Sbjct: 228 GIKASVKSRQKKPWSVFRKMETKGLSFEQLSDIFGFRVMVD---------TVQDCYRALG 278
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
++H W + G F DYI PK + Y+S+HT + GP +E+QIRT++M E AE G+AAH
Sbjct: 279 LIHTTWSMVPGRFKDYISTPKQNDYRSIHTTIIGPSRQRIELQIRTREMDEIAEFGVAAH 338
Query: 514 WLYKETG--NKLQSISS 528
+YK+ G N IS+
Sbjct: 339 SIYKDRGSANNPHKIST 355
>sp|Q2YN11|RSH_BRUA2 GTP pyrophosphokinase rsh OS=Brucella abortus (strain 2308) GN=rsh
PE=3 SV=1
Length = 750
Score = 103 bits (258), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 112/213 (52%), Gaps = 16/213 (7%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P N+ + KA +A + H Q R +GDPY +H + IL + T+ +
Sbjct: 16 PDVNEALLNKAYVYAMQKHGSQKRASGDPYFSHPLEVAAILTDMHLDEA-----TIAIAL 70
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLGHEE-- 213
LHD ++D + I++ FG E+ KLV G+++L ++ + ++ + N+ + L E
Sbjct: 71 LHDTIEDTTATRQEIDQLFGPEIGKLVEGLTKLKKLDLVSKKAVQAENLRKLLLAISEDV 130
Query: 214 ------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL 267
LADRLHNMRT+ + K +A+ET+ I+ LA R+G+ ++ ELE+L F +
Sbjct: 131 RVLLVKLADRLHNMRTLGVMREDKRLRIAEETMDIYAPLAGRMGMQDMREELEELAFRYI 190
Query: 268 QPQIFRKMRADLASMWSPRNRVGYSRRITTIVS 300
P +R + LA + +NR G ++I T +S
Sbjct: 191 NPDAWRAVTDRLAELLE-KNR-GLLQKIETDLS 221
Score = 100 bits (248), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 11/137 (8%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ ++ SR K +S+F KM K + ++ D RV+V +Q CY L
Sbjct: 228 GIKASVKSRQKKPWSVFRKMETKGLSFEQLSDIFGFRVMVD---------TVQDCYRALG 278
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
++H W + G F DYI PK + Y+S+HT + GP +E+QIRT++M E AE G+AAH
Sbjct: 279 LIHTTWSMVPGRFKDYISTPKQNDYRSIHTTIIGPSRQRIELQIRTREMDEIAEFGVAAH 338
Query: 514 WLYKETG--NKLQSISS 528
+YK+ G N IS+
Sbjct: 339 SIYKDRGSANNPHKIST 355
>sp|A5VPI9|RSH_BRUO2 GTP pyrophosphokinase rsh OS=Brucella ovis (strain ATCC 25840 /
63/290 / NCTC 10512) GN=rsh PE=3 SV=1
Length = 750
Score = 103 bits (258), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 112/213 (52%), Gaps = 16/213 (7%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P N+ + KA +A + H Q R +GDPY +H + IL + T+ +
Sbjct: 16 PDVNEALLNKAYVYAMQKHGSQKRASGDPYFSHPLEVAAILTDMHLDEA-----TIAIAL 70
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLGHEE-- 213
LHD ++D + I++ FG E+ KLV G+++L ++ + ++ + N+ + L E
Sbjct: 71 LHDTIEDTTATRQEIDQLFGPEIGKLVEGLTKLKKLDLVSKKAVQAENLRKLLLAISEDV 130
Query: 214 ------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL 267
LADRLHNMRT+ + K +A+ET+ I+ LA R+G+ ++ ELE+L F +
Sbjct: 131 RVLLVKLADRLHNMRTLGVMREDKRLRIAEETMDIYAPLAGRMGMQDMREELEELAFRYI 190
Query: 268 QPQIFRKMRADLASMWSPRNRVGYSRRITTIVS 300
P +R + LA + +NR G ++I T +S
Sbjct: 191 NPDAWRAVTDRLAELLE-KNR-GLLQKIETDLS 221
Score = 99.8 bits (247), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 11/137 (8%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ ++ SR K +S+F KM K + ++ D RV+V +Q CY L
Sbjct: 228 GIKASVKSRQKKPWSVFRKMETKGLSFEQLSDIFGFRVMVD---------TVQDCYRALG 278
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
++H W + G F DYI PK + Y+S+HT + GP +E+QIRT++M E AE G+AAH
Sbjct: 279 LIHTTWSMVPGRFKDYISTPKQNDYRSIHTTIIGPSRQRIELQIRTREMDEIAEFGVAAH 338
Query: 514 WLYKETG--NKLQSISS 528
+YK+ G N IS+
Sbjct: 339 SIYKDRGSANNPHKIST 355
>sp|Q8CY42|RSH_BRUSU GTP pyrophosphokinase rsh OS=Brucella suis biovar 1 (strain 1330)
GN=rsh PE=1 SV=1
Length = 750
Score = 103 bits (257), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 112/213 (52%), Gaps = 16/213 (7%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P N+ + KA +A + H Q R +GDPY +H + IL + T+ +
Sbjct: 16 PDVNEALLNKAYVYAMQKHGSQKRASGDPYFSHPLEVAAILTDMHLDEA-----TIAIAL 70
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLGHEE-- 213
LHD ++D + I++ FG E+ KLV G+++L ++ + ++ + N+ + L E
Sbjct: 71 LHDTIEDTTATRQEIDQLFGPEIGKLVEGLTKLKKLDLVSKKAVQAENLRKLLLAISEDV 130
Query: 214 ------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL 267
LADRLHNMRT+ + K +A+ET+ I+ LA R+G+ ++ ELE+L F +
Sbjct: 131 RVLLVKLADRLHNMRTLGVMCEDKRLRIAEETMDIYAPLAGRMGMQDMREELEELAFRYI 190
Query: 268 QPQIFRKMRADLASMWSPRNRVGYSRRITTIVS 300
P +R + LA + +NR G ++I T +S
Sbjct: 191 NPDAWRAVTDRLAELLE-KNR-GLLQKIETDLS 221
Score = 99.8 bits (247), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 11/137 (8%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
G++ ++ SR K +S+F KM K + ++ D RV+V +Q CY L
Sbjct: 228 GIKASVKSRQKKPWSVFRKMETKGLSFEQLSDIFGFRVMVD---------TVQDCYRALG 278
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
++H W + G F DYI PK + Y+S+HT + GP +E+QIRT++M E AE G+AAH
Sbjct: 279 LIHTTWSMVPGRFKDYISTPKQNDYRSIHTTIIGPSRQRIELQIRTREMDEIAEFGVAAH 338
Query: 514 WLYKETG--NKLQSISS 528
+YK+ G N IS+
Sbjct: 339 SIYKDRGSANNPHKIST 355
>sp|P75386|SPOT_MYCPN Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129)
GN=spoT PE=3 SV=1
Length = 733
Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 74/124 (59%), Gaps = 10/124 (8%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+E L SR+K +YS + K+ + I K++D A+R++V + CY LL +
Sbjct: 252 IEYRLESRIKGIYSTYQKLTFHEQNIAKIHDLFAIRLIVKSELD---------CYHLLGL 302
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
+H + + F DYI +PK + YQS+HT V+ G +E+QIRTQ+M +++G A+HW
Sbjct: 303 IHLNFTVLMKHFKDYIASPKQNFYQSIHTTVR-LKGLNVEIQIRTQRMDHVSKYGFASHW 361
Query: 515 LYKE 518
+YKE
Sbjct: 362 IYKE 365
Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 100/185 (54%), Gaps = 22/185 (11%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTG-RILAMLIPSSGKRAVDTVVAGILHDVVD 162
+ KA+ ++K+ H Q R +G+P+ H + T R++ + S +TV AG+LHD+++
Sbjct: 40 ITKALDYSKKWHGEQKRLSGEPFFIHPLRTALRLVEWNMDS------NTVCAGLLHDIIE 93
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYIN----QLLRRHRRIN----VNQGTLGHEE- 213
D + + FG E+ LV V++++ + QL R+ +N VN +E
Sbjct: 94 DTQVTEADLTAIFGKEITDLVVKVTKITSESKKQRQLNRKKEDLNLKSLVNIAMSSQQEV 153
Query: 214 ------LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL 267
LADRL N+ +I L K + +A+ETL ++ +A R+G++ +K +L DL F VL
Sbjct: 154 NALVLKLADRLDNISSIEFLAVEKQKIIAKETLELYAKIAGRIGMYPVKTQLADLSFKVL 213
Query: 268 QPQIF 272
P+ F
Sbjct: 214 DPKNF 218
>sp|P47520|SPOT_MYCGE Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 /
NCTC 10195) GN=spoT PE=3 SV=1
Length = 720
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 73/124 (58%), Gaps = 10/124 (8%)
Query: 395 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
+E L SR+K +YS + K+ + I K++D A+R++ + CY +L +
Sbjct: 239 IEYQLESRIKGIYSTYKKLTVHEQNISKIHDLFAIRLITKSELD---------CYHILGL 289
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 514
+H ++ F DYI +PK + YQS+HT V+ G +E+QIRTQ+M ++ GLA+HW
Sbjct: 290 IHLNFLIDSKYFKDYIASPKQNLYQSIHTTVR-LKGLNVEIQIRTQQMDNVSKFGLASHW 348
Query: 515 LYKE 518
+YKE
Sbjct: 349 IYKE 352
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 96/188 (51%), Gaps = 34/188 (18%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E + KA AK H Q R +G+P+ H + T L + +D T+ AG+LHD
Sbjct: 25 ELINKAFYHAKTWHENQKRLSGEPFFIHPLRTALSLV-------EWNMDPITICAGLLHD 77
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRL--------------------SYINQLLRRH 199
+++D ++ +I F E+A+LV V+++ S++N +
Sbjct: 78 IIEDTDQTEANIAMIFSKEIAELVTKVTKITNESKKQRHLKNKKENLNLKSFVNIAINSQ 137
Query: 200 RRINVNQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAEL 259
+ INV L +LADRL N+ +I LP K + +A+ETL ++ +A R+G++ +K +L
Sbjct: 138 QEINV--MVL---KLADRLDNIASIEFLPIEKQKVIAKETLELYAKIAGRIGMYPVKTKL 192
Query: 260 EDLCFAVL 267
DL F VL
Sbjct: 193 ADLSFKVL 200
>sp|Q4UMH6|Y381_RICFE Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=4 SV=1
Length = 1179
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 10/124 (8%)
Query: 394 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 453
++ +LS R+KS YSI+ K KD+ I + D A R +V +K + CY +
Sbjct: 209 NIKASLSYRIKSPYSIWIKTLVKDIHITALNDILAFRAIVPNK---------KACYDVSK 259
Query: 454 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 513
++H + I +F DYI PK +GYQS+H + G + +E+QIR+ MH ++G +AH
Sbjct: 260 LIHLHYNTITSQFVDYIRYPKNNGYQSIHLVISGGNKGNIELQIRSTTMHRQTQYG-SAH 318
Query: 514 WLYK 517
YK
Sbjct: 319 HTYK 322
>sp|Q8N4P3|MESH1_HUMAN Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1
OS=Homo sapiens GN=HDDC3 PE=1 SV=3
Length = 179
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 66/134 (49%), Gaps = 12/134 (8%)
Query: 103 QVQKAIAFAKRAHHGQFRK--TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDV 160
Q+ +A FA R H Q RK G PY+ H I RIL +G + + A +LHD
Sbjct: 7 QLLEAADFAARKHRQQRRKDPEGTPYINHPIGVARILTH---EAGITDIVVLQAALLHDT 63
Query: 161 VDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-----ELA 215
V+D +L +E FG +V +LV V+ + +L R +R+ V Q +LA
Sbjct: 64 VEDTDTTLDEVELHFGAQVRRLVEEVTDDKTLPKLER--KRLQVEQAPHSSPGAKLVKLA 121
Query: 216 DRLHNMRTIYALPP 229
D+L+N+R + P
Sbjct: 122 DKLYNLRDLNRCTP 135
>sp|Q9D114|MESH1_MOUSE Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1
OS=Mus musculus GN=Hddc3 PE=2 SV=1
Length = 179
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 8/132 (6%)
Query: 103 QVQKAIAFAKRAHHGQFRK--TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDV 160
Q+ +A FA H Q RK G PY+ H I RIL +G + + A +LHD
Sbjct: 7 QLLEAADFAAHKHRQQRRKDPEGTPYINHPIGVARILTH---EAGITDIVVLQAALLHDT 63
Query: 161 VDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLGHE--ELADR 217
V+D +L +E FG +V +LV V+ + +L R+ +++ + G + +LAD+
Sbjct: 64 VEDTDTTLDEVELHFGAQVRRLVEEVTDDKTLPKLERKRQQVEQAPHSSPGAKLVKLADK 123
Query: 218 LHNMRTIYALPP 229
L+N+R + P
Sbjct: 124 LYNLRDLNRCTP 135
>sp|Q568P1|MESH1_DANRE Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1
OS=Danio rerio GN=hddc3 PE=2 SV=1
Length = 180
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 13/163 (7%)
Query: 106 KAIAFAKRAHHGQFRK--TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ + FA H Q K G PY+ H I RIL+ V+ + A +LHD V+D
Sbjct: 11 ETVNFAAEKHRNQRHKDPEGTPYINHPIGVARILSH---EGEITDVEVIQAALLHDTVED 67
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRIN-----VNQGTLGHEELADRL 218
+ +E FG VA++V GV+ + + R +++ +Q L +LAD+L
Sbjct: 68 TDTTFEELESVFGATVARIVQGVTDDKSLPKAERERQQVEHAPHCSHQAKLV--KLADKL 125
Query: 219 HNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 261
+N+R + P A + W S + GL A +E+
Sbjct: 126 YNLRDLNRCTPEGWSAQRVQEYFEWASQVVK-GLRGTNAAIEE 167
>sp|P29941|YCB8_PSEDE Uncharacterized 19.2 kDa protein in cobO 3'region OS=Pseudomonas
denitrificans PE=4 SV=1
Length = 175
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 107 AIAFAKRAHHGQFRK-TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
A+ FA RAH Q RK G PY+ H I I+ S + + A +LHD V+D
Sbjct: 17 ALQFATRAHGEQKRKYDGRPYIVHPIAVAEIV-----RSVPHTPEMIAAALLHDTVEDTD 71
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLS 190
+L I+E FG +VA LVA ++ +S
Sbjct: 72 ATLLEIKEAFGPKVATLVAWLTDIS 96
>sp|Q9VAM9|MESH1_DROME Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1
OS=Drosophila melanogaster GN=Mesh1 PE=1 SV=1
Length = 179
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 12/145 (8%)
Query: 106 KAIAFAKRAHHGQFRKTGD--PYLTHCIHTGRILAM--LIPSSGKRAVDTVVAGILHDVV 161
+ + +A H Q RK PY+ H I+ IL++ I G ++A +LHDVV
Sbjct: 11 ECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACITDEG-----VLMAALLHDVV 65
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLGHE--ELADRL 218
+D S +E+ FG +V LV V+ + + R+ +I N + + + +LAD+L
Sbjct: 66 EDTDASFEDVEKLFGPDVCGLVREVTDDKSLEKQERKRLQIENAAKSSCRAKLIKLADKL 125
Query: 219 HNMRTIYALPPAKARAVAQETLLIW 243
N+R + P ++ +W
Sbjct: 126 DNLRDLQVNTPTGWTQERRDQYFVW 150
>sp|Q28C98|MESH1_XENTR Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1
OS=Xenopus tropicalis GN=hddc3 PE=2 SV=1
Length = 179
Score = 47.0 bits (110), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 12/133 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGD--PYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
+ +A FA H Q RK + PY+ H + RIL+ G + A +LHD V
Sbjct: 8 ILEAANFAAEKHKQQRRKDPEKTPYINHPLGVARILSH---EGGITDTAVLQAALLHDTV 64
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-----ELAD 216
+D + IE FG +V +V V+ + ++ R +R+ + + +LAD
Sbjct: 65 EDTNTTFEEIELHFGQDVRNIVEEVTDDKTLPKMER--KRLQMEHAPHCSQKAKLVKLAD 122
Query: 217 RLHNMRTIYALPP 229
+L+N+R + P
Sbjct: 123 KLYNLRDLKRCTP 135
>sp|O31611|YJBM_BACSU GTP pyrophosphokinase YjbM OS=Bacillus subtilis (strain 168)
GN=yjbM PE=1 SV=1
Length = 211
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 19/157 (12%)
Query: 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 458
++ R+K + SI K RRK + +H++ ++ + G + IQ +L +
Sbjct: 43 VTGRVKPVASILEKARRKSIPLHEI---ETMQDIAGLRIMCQFVDDIQIVKEML-FARKD 98
Query: 459 WIPIDGEFDDYIVNPKPSGYQSLH-------TAVQGPDGSALEVQIRTQKMHEYA--EHG 509
+ +D DYI K SGY+S H V G +E+QIRT M+ +A EH
Sbjct: 99 FTVVDQR--DYIAEHKESGYRSYHLVVLYPLQTVSGEKHVLVEIQIRTLAMNFWATIEHS 156
Query: 510 LAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDD 546
L YK +GN + + + EA+S L ++ +
Sbjct: 157 LN----YKYSGNIPEKVKLRLQRASEAASRLDEEMSE 189
>sp|P39583|YWAC_BACSU GTP pyrophosphokinase YwaC OS=Bacillus subtilis (strain 168)
GN=ywaC PE=1 SV=1
Length = 210
Score = 41.6 bits (96), Expect = 0.026, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 24/123 (19%)
Query: 401 SRLKSLYSIFSKMRRKDVGI------HKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 454
SR+KS SI +K+ RK I ++D +R++ I Y+++++
Sbjct: 57 SRVKSFESIVNKLMRKGCEITTKEMKEHIHDIAGVRIICS---------FISDIYNVVNV 107
Query: 455 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGP-------DGSALEVQIRTQKMHEYA- 506
+ + + DYI PKP+GY+SLH ++ P + E+QIRT M +A
Sbjct: 108 LKQHEDLRIVKVKDYIQTPKPNGYRSLHLIIEMPVNLTNRVEYVKAEIQIRTIAMDFWAS 167
Query: 507 -EH 508
EH
Sbjct: 168 LEH 170
>sp|B6J5F6|RS4_COXB1 30S ribosomal protein S4 OS=Coxiella burnetii (strain CbuK_Q154)
GN=rpsD PE=3 SV=1
Length = 206
Score = 34.7 bits (78), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 773 RSGSTAADAAMKVGLEGKLVLVNGQLV-LPNTELKDGDIVEVR 814
R G +A A + + K +LVNG++V +P+ ++K GDI+EVR
Sbjct: 104 RMGFSATRAEARQLISHKAILVNGEVVNIPSYQVKPGDIIEVR 146
>sp|A1ARE5|SYT_PELPD Threonine--tRNA ligase OS=Pelobacter propionicus (strain DSM 2379)
GN=thrS PE=3 SV=1
Length = 636
Score = 34.3 bits (77), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 10/61 (16%)
Query: 760 VIVCWPNGEIMRLRSGSTAADAAMKVG-------LEGKLVLVNGQLVLPNTELKDGDIVE 812
+ + P+G + SGST AD A +G + GKL +G+LV +TELKD VE
Sbjct: 4 ISIALPDGSKREIASGSTIADLAASIGAGLAKAAIAGKL---DGELVDLSTELKDDSRVE 60
Query: 813 V 813
+
Sbjct: 61 I 61
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 296,172,644
Number of Sequences: 539616
Number of extensions: 12400538
Number of successful extensions: 34037
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 33787
Number of HSP's gapped (non-prelim): 147
length of query: 815
length of database: 191,569,459
effective HSP length: 126
effective length of query: 689
effective length of database: 123,577,843
effective search space: 85145133827
effective search space used: 85145133827
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)