Query 003497
Match_columns 815
No_of_seqs 537 out of 2472
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 00:33:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003497.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003497hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0317 SpoT Guanosine polypho 100.0 1E-124 3E-129 1082.0 28.6 454 94-665 17-500 (701)
2 PRK10872 relA (p)ppGpp synthet 100.0 1E-118 2E-123 1046.9 30.0 449 94-662 25-518 (743)
3 PRK11092 bifunctional (p)ppGpp 100.0 5E-117 1E-121 1034.7 33.4 451 95-663 13-497 (702)
4 TIGR00691 spoT_relA (p)ppGpp s 100.0 3E-110 7E-115 978.4 31.8 437 107-661 1-469 (683)
5 KOG1157 Predicted guanosine po 100.0 1.9E-71 4.1E-76 594.9 25.6 321 98-523 71-401 (543)
6 PF13328 HD_4: HD domain; PDB: 100.0 1E-33 2.3E-38 276.3 10.7 141 107-253 1-153 (153)
7 PF04607 RelA_SpoT: Region fou 99.9 4.4E-28 9.5E-33 224.8 7.5 108 401-519 1-114 (115)
8 cd05399 NT_Rel-Spo_like Nucleo 99.9 3.5E-27 7.6E-32 223.7 12.6 118 376-508 6-129 (129)
9 COG0317 SpoT Guanosine polypho 99.9 5.4E-27 1.2E-31 272.7 8.0 91 716-815 354-448 (701)
10 COG2357 PpGpp synthetase catal 99.9 6.9E-26 1.5E-30 232.9 10.3 132 379-523 37-181 (231)
11 PRK11092 bifunctional (p)ppGpp 99.9 7.8E-26 1.7E-30 266.6 8.2 91 716-815 353-447 (702)
12 PRK10872 relA (p)ppGpp synthet 99.9 5.5E-24 1.2E-28 250.9 7.9 92 715-815 370-465 (743)
13 TIGR00691 spoT_relA (p)ppGpp s 99.9 1.4E-22 3E-27 239.4 8.2 91 716-815 327-421 (683)
14 PF02824 TGS: TGS domain; Int 99.5 1.5E-14 3.3E-19 121.4 4.3 56 760-815 1-60 (60)
15 cd01669 TGS_Ygr210_C TGS_Ygr21 98.9 1.2E-09 2.5E-14 96.3 4.5 48 767-815 22-76 (76)
16 cd01666 TGS_DRG_C TGS_DRG_C: 98.8 6.2E-09 1.4E-13 91.5 5.3 49 767-815 16-75 (75)
17 cd01668 TGS_RelA_SpoT TGS_RelA 98.7 2.9E-08 6.3E-13 81.5 7.2 56 760-815 1-60 (60)
18 PF02824 TGS: TGS domain; Int 98.2 3.7E-07 8E-12 76.9 1.5 49 553-608 2-60 (60)
19 cd01616 TGS The TGS domain, na 98.2 6E-06 1.3E-10 66.0 6.9 54 762-815 3-60 (60)
20 PRK01777 hypothetical protein; 98.0 1.1E-05 2.3E-10 74.3 7.0 56 758-814 7-74 (95)
21 TIGR03276 Phn-HD phosphonate d 97.9 3.3E-05 7.1E-10 78.6 7.6 72 114-190 12-102 (179)
22 PRK09602 translation-associate 97.9 1.2E-05 2.6E-10 91.0 4.7 46 769-815 342-394 (396)
23 PRK05659 sulfur carrier protei 97.8 4.9E-05 1.1E-09 64.6 6.3 53 763-815 3-61 (66)
24 cd04938 TGS_Obg-like TGS_Obg-l 97.8 4E-05 8.6E-10 67.8 5.2 48 768-815 24-76 (76)
25 PRK06944 sulfur carrier protei 97.6 0.00014 3.1E-09 61.5 6.3 52 764-815 4-60 (65)
26 cd01667 TGS_ThrRS_N TGS _ThrRS 97.6 0.00019 4.2E-09 57.7 6.4 54 762-815 3-60 (61)
27 PRK06437 hypothetical protein; 97.6 0.00016 3.6E-09 62.3 6.1 52 764-815 6-62 (67)
28 cd00565 ThiS ThiaminS ubiquiti 97.5 0.00019 4.2E-09 61.0 5.5 51 765-815 4-60 (65)
29 PRK07440 hypothetical protein; 97.5 0.00023 5.1E-09 61.9 6.1 54 762-815 6-65 (70)
30 COG2104 ThiS Sulfur transfer p 97.4 0.00028 6.1E-09 61.3 5.8 50 766-815 8-63 (68)
31 PRK08364 sulfur carrier protei 97.4 0.00045 9.7E-09 59.9 6.3 47 769-815 17-65 (70)
32 PRK07696 sulfur carrier protei 97.3 0.00035 7.5E-09 60.2 5.4 52 764-815 4-62 (67)
33 TIGR01683 thiS thiamine biosyn 97.3 0.00066 1.4E-08 57.7 6.1 50 766-815 4-59 (64)
34 cd01669 TGS_Ygr210_C TGS_Ygr21 97.1 0.00026 5.6E-09 62.7 2.4 41 563-608 36-76 (76)
35 PRK08053 sulfur carrier protei 97.1 0.0012 2.5E-08 56.6 6.2 52 764-815 4-61 (66)
36 PF03658 Ub-RnfH: RnfH family 97.0 0.0006 1.3E-08 61.6 3.5 55 759-814 5-71 (84)
37 cd01666 TGS_DRG_C TGS_DRG_C: 97.0 0.00032 7E-09 62.0 1.6 46 561-608 21-75 (75)
38 PF14451 Ub-Mut7C: Mut7-C ubiq 96.9 0.0016 3.4E-08 58.5 5.7 46 769-814 26-74 (81)
39 PRK06488 sulfur carrier protei 96.8 0.0025 5.4E-08 54.2 5.7 50 765-815 5-60 (65)
40 PRK05863 sulfur carrier protei 96.3 0.0071 1.5E-07 51.7 5.1 53 763-815 3-60 (65)
41 PRK06083 sulfur carrier protei 96.2 0.012 2.7E-07 53.2 6.3 57 759-815 17-79 (84)
42 cd00754 MoaD Ubiquitin domain 96.1 0.011 2.4E-07 51.5 5.5 48 768-815 18-75 (80)
43 PLN02799 Molybdopterin synthas 96.0 0.015 3.3E-07 51.4 5.8 49 766-814 19-76 (82)
44 PF02597 ThiS: ThiS family; I 95.3 0.025 5.3E-07 48.8 4.5 47 768-814 14-71 (77)
45 cd01668 TGS_RelA_SpoT TGS_RelA 95.2 0.016 3.4E-07 47.4 2.9 48 554-608 3-60 (60)
46 COG2914 Uncharacterized protei 95.0 0.04 8.8E-07 50.8 5.1 45 770-814 21-74 (99)
47 PTZ00258 GTP-binding protein; 95.0 0.037 8E-07 63.0 5.9 56 759-814 304-385 (390)
48 PRK14707 hypothetical protein; 94.8 0.071 1.5E-06 69.7 8.2 109 400-520 2308-2425(2710)
49 COG1163 DRG Predicted GTPase [ 94.8 0.02 4.3E-07 63.4 3.0 45 770-814 308-363 (365)
50 TIGR01682 moaD molybdopterin c 94.2 0.12 2.5E-06 45.6 5.9 47 768-814 18-74 (80)
51 PLN02908 threonyl-tRNA synthet 93.8 0.32 7E-06 59.2 10.7 88 709-815 20-112 (686)
52 PRK12444 threonyl-tRNA synthet 92.5 0.25 5.4E-06 59.6 7.0 56 760-815 6-65 (639)
53 smart00471 HDc Metal dependent 91.7 0.18 4E-06 44.8 3.6 43 123-165 2-45 (124)
54 cd01616 TGS The TGS domain, na 91.6 0.16 3.5E-06 40.2 2.9 41 561-608 13-60 (60)
55 PRK09602 translation-associate 90.2 0.1 2.3E-06 59.5 0.7 45 561-610 345-396 (396)
56 PF01966 HD: HD domain; Inter 90.2 0.28 6.1E-06 44.3 3.4 38 127-164 2-41 (122)
57 TIGR01687 moaD_arch MoaD famil 90.0 0.64 1.4E-05 41.5 5.4 46 768-814 18-82 (88)
58 PRK09169 hypothetical protein; 89.1 2.4 5.3E-05 57.0 11.6 109 399-519 1916-2034(2316)
59 PRK12703 tRNA 2'-O-methylase; 89.1 1.6 3.5E-05 49.1 8.8 78 104-187 172-257 (339)
60 PRK11130 moaD molybdopterin sy 89.0 1.2 2.7E-05 39.5 6.4 41 774-814 24-75 (81)
61 TIGR02988 YaaA_near_RecF S4 do 88.9 0.37 8E-06 40.2 2.9 27 787-813 31-58 (59)
62 PF01479 S4: S4 domain; Inter 87.3 0.31 6.7E-06 38.7 1.4 25 787-811 23-48 (48)
63 PRK14707 hypothetical protein; 87.1 1.3 2.7E-05 58.9 7.1 103 404-518 2544-2654(2710)
64 PRK09601 GTP-binding protein Y 86.6 0.55 1.2E-05 53.2 3.4 56 759-814 280-361 (364)
65 cd01764 Urm1 Urm1-like ubuitin 85.1 1.7 3.6E-05 40.1 5.2 41 774-814 27-88 (94)
66 PRK05659 sulfur carrier protei 84.9 0.82 1.8E-05 38.7 2.9 42 561-609 12-62 (66)
67 PF14453 ThiS-like: ThiS-like 84.7 2.8 6.1E-05 35.6 5.9 49 766-814 6-54 (57)
68 cd01667 TGS_ThrRS_N TGS _ThrRS 84.0 0.99 2.1E-05 35.9 2.8 41 561-608 13-60 (61)
69 smart00363 S4 S4 RNA-binding d 82.3 1.1 2.5E-05 35.2 2.6 26 789-814 25-51 (60)
70 PRK00413 thrS threonyl-tRNA sy 81.4 1.1 2.4E-05 53.9 3.2 45 561-612 14-65 (638)
71 PF03658 Ub-RnfH: RnfH family 80.7 0.79 1.7E-05 41.8 1.2 21 587-609 53-73 (84)
72 cd00077 HDc Metal dependent ph 80.6 1.7 3.7E-05 39.2 3.4 40 125-164 2-44 (145)
73 COG2104 ThiS Sulfur transfer p 80.2 1.5 3.2E-05 38.4 2.7 41 561-608 14-63 (68)
74 COG1188 Ribosome-associated he 80.1 1.8 3.9E-05 40.7 3.3 26 789-814 33-58 (100)
75 cd04938 TGS_Obg-like TGS_Obg-l 77.7 1.9 4E-05 38.4 2.6 42 561-608 28-76 (76)
76 cd00565 ThiS ThiaminS ubiquiti 77.3 1.8 3.9E-05 36.8 2.3 22 586-609 36-61 (65)
77 PRK07440 hypothetical protein; 76.3 2.5 5.5E-05 36.9 3.0 42 561-609 16-66 (70)
78 TIGR03401 cyanamide_fam HD dom 74.8 4.7 0.0001 43.0 5.1 60 96-162 33-96 (228)
79 PRK06437 hypothetical protein; 74.6 2.1 4.5E-05 37.1 2.0 22 586-609 42-63 (67)
80 PRK01777 hypothetical protein; 72.6 2.6 5.7E-05 39.1 2.3 23 586-610 55-77 (95)
81 cd00165 S4 S4/Hsp/ tRNA synthe 71.9 3.6 7.9E-05 33.3 2.8 26 788-813 24-50 (70)
82 COG1418 Predicted HD superfami 71.0 4.4 9.6E-05 42.9 3.9 45 122-166 33-77 (222)
83 COG1977 MoaD Molybdopterin con 69.7 4.1 8.9E-05 36.7 2.8 23 792-814 56-78 (84)
84 PF00498 FHA: FHA domain; Int 67.7 3.7 7.9E-05 34.5 2.0 24 790-813 42-67 (68)
85 PRK08053 sulfur carrier protei 63.5 6.8 0.00015 33.5 2.9 22 586-609 37-62 (66)
86 PRK08364 sulfur carrier protei 63.5 6.8 0.00015 34.0 2.9 22 586-609 45-66 (70)
87 PRK07696 sulfur carrier protei 60.4 7.4 0.00016 33.6 2.5 22 586-609 38-63 (67)
88 PRK06488 sulfur carrier protei 59.8 9.3 0.0002 32.4 3.0 22 586-609 36-61 (65)
89 PRK05327 rpsD 30S ribosomal pr 59.0 8.2 0.00018 40.5 3.1 27 788-814 116-143 (203)
90 COG0012 Predicted GTPase, prob 58.3 3.5 7.6E-05 46.9 0.2 46 768-813 320-368 (372)
91 PRK10119 putative hydrolase; P 58.1 19 0.00041 38.6 5.7 59 101-162 4-62 (231)
92 PF14451 Ub-Mut7C: Mut7-C ubiq 55.2 13 0.00029 33.6 3.3 29 574-608 47-75 (81)
93 TIGR00277 HDIG uncharacterized 54.8 10 0.00022 31.9 2.5 39 124-162 3-41 (80)
94 TIGR01683 thiS thiamine biosyn 53.7 13 0.00027 31.6 2.8 22 586-609 35-60 (64)
95 PRK00413 thrS threonyl-tRNA sy 52.7 11 0.00024 45.6 3.1 28 788-815 34-61 (638)
96 TIGR01017 rpsD_bact ribosomal 51.6 13 0.00029 38.8 3.2 27 788-814 113-140 (200)
97 PF13510 Fer2_4: 2Fe-2S iron-s 51.4 31 0.00066 30.9 5.0 55 759-813 2-79 (82)
98 PF06071 YchF-GTPase_C: Protei 48.8 12 0.00026 34.3 2.0 46 769-814 14-82 (84)
99 CHL00113 rps4 ribosomal protei 48.7 15 0.00032 38.7 2.9 28 787-814 111-139 (201)
100 TIGR00488 putative HD superfam 47.7 11 0.00024 37.4 1.8 39 124-162 7-45 (158)
101 COG0522 RpsD Ribosomal protein 47.5 20 0.00042 37.9 3.7 28 787-814 116-144 (205)
102 PRK06944 sulfur carrier protei 45.7 17 0.00036 30.6 2.3 22 586-609 36-61 (65)
103 TIGR03069 PS_II_S4 photosystem 45.6 19 0.00041 39.1 3.3 28 787-814 205-233 (257)
104 PLN00051 RNA-binding S4 domain 43.6 20 0.00043 39.3 3.1 28 787-814 213-241 (267)
105 PRK11507 ribosome-associated p 43.4 24 0.00052 31.3 3.0 27 787-813 34-61 (70)
106 COG4341 Predicted HD phosphohy 42.4 24 0.00053 36.1 3.2 36 120-160 23-60 (186)
107 cd00754 MoaD Ubiquitin domain 41.6 22 0.00048 30.7 2.5 22 586-609 55-76 (80)
108 COG1977 MoaD Molybdopterin con 39.9 31 0.00067 31.1 3.3 30 573-609 51-80 (84)
109 TIGR00295 conserved hypothetic 39.8 22 0.00047 35.8 2.5 41 123-163 11-56 (164)
110 COG1713 Predicted HD superfami 39.0 16 0.00034 38.1 1.4 43 123-165 15-57 (187)
111 cd04867 TGS_YchF_C TGS_YchF_C: 38.5 30 0.00064 31.7 2.9 43 768-814 13-82 (83)
112 cd01809 Scythe_N Ubiquitin-lik 38.3 85 0.0018 26.3 5.6 56 759-814 2-70 (72)
113 PRK06083 sulfur carrier protei 36.6 18 0.00039 33.0 1.2 22 586-609 55-80 (84)
114 COG3383 Uncharacterized anaero 36.4 62 0.0013 40.4 5.9 56 758-813 3-76 (978)
115 PRK00106 hypothetical protein; 36.2 25 0.00054 42.2 2.6 42 122-163 347-388 (535)
116 PRK07152 nadD putative nicotin 35.5 20 0.00042 40.2 1.6 40 124-163 195-234 (342)
117 COG2302 Uncharacterized conser 33.6 33 0.00071 37.4 2.7 28 787-814 202-230 (257)
118 PRK11025 23S rRNA pseudouridyl 33.4 32 0.00069 38.2 2.8 25 789-813 44-68 (317)
119 PRK12705 hypothetical protein; 32.2 33 0.00072 40.9 2.8 42 122-163 320-361 (508)
120 COG0564 RluA Pseudouridylate s 32.1 32 0.00069 38.0 2.5 25 790-814 37-61 (289)
121 COG1078 HD superfamily phospho 30.7 31 0.00067 40.2 2.2 35 126-160 52-95 (421)
122 PRK12704 phosphodiesterase; Pr 30.6 37 0.00079 40.6 2.8 42 122-163 332-373 (520)
123 PF02597 ThiS: ThiS family; I 30.5 40 0.00087 28.8 2.4 22 586-609 49-73 (77)
124 PLN02799 Molybdopterin synthas 30.1 44 0.00096 29.4 2.6 22 586-609 57-78 (82)
125 PRK10348 ribosome-associated h 30.0 53 0.0011 32.6 3.3 27 788-814 32-58 (133)
126 PTZ00258 GTP-binding protein; 29.3 34 0.00073 39.5 2.2 49 561-609 320-387 (390)
127 PTZ00305 NADH:ubiquinone oxido 28.0 93 0.002 34.8 5.1 50 764-813 72-142 (297)
128 TIGR03319 YmdA_YtgF conserved 27.8 40 0.00088 40.2 2.5 40 123-162 327-366 (514)
129 TIGR00384 dhsB succinate dehyd 27.5 64 0.0014 33.9 3.7 40 770-809 19-77 (220)
130 PRK11840 bifunctional sulfur c 27.2 47 0.001 37.5 2.7 24 776-799 259-282 (326)
131 COG2914 Uncharacterized protei 26.1 95 0.0021 29.3 4.0 22 587-610 56-77 (99)
132 KOG3148 Glucosamine-6-phosphat 25.7 36 0.00078 35.7 1.4 22 761-782 25-49 (273)
133 cd01805 RAD23_N Ubiquitin-like 25.6 2.3E+02 0.0049 24.3 6.2 56 759-814 2-72 (77)
134 PF13275 S4_2: S4 domain; PDB: 25.2 38 0.00082 29.6 1.2 23 791-813 34-57 (65)
135 COG2501 S4-like RNA binding pr 24.6 66 0.0014 28.9 2.6 27 787-813 34-61 (73)
136 PRK11180 rluD 23S rRNA pseudou 24.5 60 0.0013 36.2 3.0 28 787-814 40-68 (325)
137 PF05153 DUF706: Family of unk 23.9 1E+02 0.0022 33.6 4.4 52 104-160 41-93 (253)
138 TIGR01682 moaD molybdopterin c 23.4 88 0.0019 27.4 3.3 21 586-608 55-75 (80)
139 PRK11130 moaD molybdopterin sy 23.0 95 0.0021 27.5 3.4 21 586-608 56-76 (81)
140 COG3400 Uncharacterized protei 23.0 87 0.0019 35.9 3.8 64 747-814 132-206 (471)
141 PF12791 RsgI_N: Anti-sigma fa 22.7 74 0.0016 26.2 2.5 24 754-777 2-25 (56)
142 cd00060 FHA Forkhead associate 22.2 90 0.0019 27.4 3.1 24 791-814 67-92 (102)
143 PF04753 Corona_NS2: Coronavir 22.2 47 0.001 31.2 1.3 12 257-268 20-31 (109)
144 KOG1573 Aldehyde reductase [Ge 22.0 1.5E+02 0.0032 30.6 4.8 33 123-160 94-127 (204)
145 COG1188 Ribosome-associated he 21.3 68 0.0015 30.4 2.2 31 575-610 31-61 (100)
146 PRK12577 succinate dehydrogena 21.0 1.3E+02 0.0028 33.8 4.8 39 769-807 22-78 (329)
147 COG1896 Predicted hydrolases o 20.7 6E+02 0.013 26.5 9.2 43 121-163 29-76 (193)
148 PRK05910 type III secretion sy 20.0 92 0.002 37.8 3.4 77 205-281 444-523 (584)
No 1
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=100.00 E-value=1.3e-124 Score=1081.99 Aligned_cols=454 Identities=37% Similarity=0.591 Sum_probs=406.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHhhcCCccccCcchhhhHHHHHHHHHHcCCCCCCChhHHHHHhhhccccccccCCHHHHHh
Q 003497 94 TGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEE 173 (815)
Q Consensus 94 ~~y~~~~~~~l~kA~~fA~~aH~GQ~RksGePYI~HpL~VA~ILa~L~~~~g~~D~dtIaAALLHDvVEDT~vTlEeI~~ 173 (815)
..|.+..+..+.+|+.||.++|.||+|+||+|||.||++||.||+++++ |.++++||||||++|||++|.++|++
T Consensus 17 ~~~~~~~~~~l~kA~~~A~q~H~~q~r~SGePYi~Hpl~Va~iLael~~-----d~~tl~AaLLHD~vEDt~~t~e~i~~ 91 (701)
T COG0317 17 ATYLPPVDIELKKAWYYARQAHGGQTRKSGEPYISHPLEVAEILAELHM-----DMETLAAALLHDTIEDTPVTEELIEE 91 (701)
T ss_pred HhcCChHHHHHHHHHHHHHHHhHhhcCcCCCchhhCHHHHHHHHHHccC-----CHHHHHHHHccchHhcCCCCHHHHHH
Confidence 4555445556999999999999999999999999999999999999985 68999999999999999999999999
Q ss_pred HhcHHHHHHHHHhhhchhhHHH-H-HHHHHHhhccCccc--------HHHHHHHHHhhHhhhcCCCchHHHHHHhhhhhH
Q 003497 174 EFGDEVAKLVAGVSRLSYINQL-L-RRHRRINVNQGTLG--------HEELADRLHNMRTIYALPPAKARAVAQETLLIW 243 (815)
Q Consensus 174 ~FG~eVA~LV~gVTKls~i~~~-~-~~~~~~~~rk~~ls--------~vKLADRLhNMRTL~~lp~ekq~~iA~ETl~IY 243 (815)
.||++|++||+||||+..+... . ...+.+++++++++ ++||||||||||||.+++++||+++|+||++||
T Consensus 92 ~FG~eVa~LV~GvTkl~~i~~~~~~~~~qaen~rkmllAm~~DiRvilIKLADRLhNmrtl~~~~~ek~~riakETl~Iy 171 (701)
T COG0317 92 IFGKEVAKLVEGVTKLKKIGQLSSEEELQAENLRKMLLAMVKDIRVVLIKLADRLHNLRTLKNLDEEKRRRIARETLDIY 171 (701)
T ss_pred HHCHHHHHHHhhHHHhhhhhccCccchhHHHHHHHHHHHhccCccEEEeehhhhhhhcccCccCCHHHHHHHHHHHHHHH
Confidence 9999999999999999998321 1 12256778877554 568999999999999988999999999999999
Q ss_pred hhhhhhhChHHHHHHHHHHHHHhcChHHHHHHHHHHhhccCCCcccccccccccccCCCCCccCccCCCCcccchhhhhh
Q 003497 244 CSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVL 323 (815)
Q Consensus 244 APLA~RLGi~~iK~ELEDLsF~~L~P~~Y~~i~~~l~~~w~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (815)
||||||||||++|||||||||+||+|+.|+.|.+.|.+
T Consensus 172 APLA~RLGi~~iK~ELEDlsFr~l~P~~Y~~I~~~l~e------------------------------------------ 209 (701)
T COG0317 172 APLAHRLGIGQIKWELEDLSFRYLHPDQYKRIAKLLDE------------------------------------------ 209 (701)
T ss_pred HHHHHHhhhHHHHHHHHhhhhhhhChHHHHHHHHHHHH------------------------------------------
Confidence 99999999999999999999999999999999999986
Q ss_pred hHHHhhhhccccchhhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhccCCCCCceEEEEEee
Q 003497 324 SMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRL 403 (815)
Q Consensus 324 ~~k~ll~~v~~fd~~~~r~~r~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~~~~~~~~~~gi~~~I~gR~ 403 (815)
+|.+|+.+++++. ..|++.|.+. |++++|+||+
T Consensus 210 ----------------~r~~re~~i~~~~----------------------~~l~~~L~~~---------gi~a~v~gR~ 242 (701)
T COG0317 210 ----------------KRLEREQYIENVV----------------------SELREELKAA---------GIKAEVSGRP 242 (701)
T ss_pred ----------------HHHHHHHHHHHHH----------------------HHHHHHHHHc---------CCeEEEEcCC
Confidence 4788999998876 2355666663 8999999999
Q ss_pred cChhHHHHHHHhcCCCCCccccceeEEEEEcCCCCCCCCccHHHHHHHHHHHHhcCCcccccccccccCCCCCCCceeEE
Q 003497 404 KSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHT 483 (815)
Q Consensus 404 K~~ySI~~Km~rk~~~~~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~ilgiIh~~~~pip~r~kDYIa~PK~nGYqSLHt 483 (815)
||+||||+||++|+..|++|+|++||||||++ +.|||++||+||.+|+|+|+|||||||+||+||||||||
T Consensus 243 KhiYSIyrKM~~k~~~f~~I~Dl~avRiIv~~---------~~dCY~~LGiVH~~~kp~PgrFKDYIA~PK~NgYQSlHT 313 (701)
T COG0317 243 KHIYSIYRKMQKKKLSFDEIYDVRAVRIIVDT---------IPDCYTALGIVHTLWKPIPGEFDDYIANPKPNGYQSLHT 313 (701)
T ss_pred CcccHHHHHHHHcccChhhhhhheeEEEEECC---------hHHHHHHHHHHHhcCcCCCCccccccccCCCCCCceeEE
Confidence 99999999999999999999999999999996 889999999999999999999999999999999999999
Q ss_pred EEEcCCCcEEEEEEeechhhhHHHhhhhhhhhccccCCccccccccccchHHHhccCCCCCCCCCccccc-------ccc
Q 003497 484 AVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTD-------LFQ 556 (815)
Q Consensus 484 ~V~~p~g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~~~~~~~~~~~~~~~l~~~~~~~~~~~e~~~~~~~d-------vft 556 (815)
||.||.|.++||||||+.||+.||+|+||||.||+++......-.+-++|.+|++...++.||++++|.| +||
T Consensus 314 tv~gp~g~~vEvQIRT~eMh~~AE~GvAAHW~YKe~~~~~~~~~~Wlr~lle~q~~~~d~~ef~e~~k~dlf~d~VyvfT 393 (701)
T COG0317 314 TVIGPEGKPVEVQIRTKEMHEIAELGVAAHWRYKEGGSAYEEKIAWLRQLLEWQEESADSGEFLEQLKSDLFPDRVYVFT 393 (701)
T ss_pred EEECCCCceEEEEEecHHHHHHHhhhHHHHhHhhcCCchhhHHHHHHHHHHHHHHhcCCcHHHHHHHhhcccCceEEEEC
Confidence 9999999999999999999999999999999999987322110123355678888878788999999988 479
Q ss_pred cccc---ccCCCcee-------eecCCeeeEEEEEEEccCCeeEEeecccccCCCCeEEEcCCC--CcchhHHHHHHHhH
Q 003497 557 KYSS---LKMGHPVI-------RVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPS--FQIKCWEAYARLYK 624 (815)
Q Consensus 557 pkg~---lp~G~tv~-------~~iG~~c~gAkV~~v~~nGr~~lVpLs~~L~~GD~VeI~ts~--~p~~dWL~~v~t~k 624 (815)
|||+ ||.|+|++ |.|||+|+|||| ||| +|||+|+|+|||+|||+|++ +|++||||||+|+|
T Consensus 394 PkG~vi~LP~GatplDFAY~vHt~iG~~c~gAkV-----nG~--ivpl~~~Lk~Gd~VEIit~k~~~Ps~~Wl~~v~t~k 466 (701)
T COG0317 394 PKGKVIDLPKGATPLDFAYAVHTDIGHRCIGAKV-----NGR--IVPLTTKLQTGDQVEIITSKHAGPSRDWLNFVVTSR 466 (701)
T ss_pred CCCCEEeCCCCCcchhhhhhhhchhcceeeEEEE-----CCE--EeccceecCCCCEEEEEeCCCCCCCHHHHHHHhhHH
Confidence 9996 79997755 559999999999 999 99999999999999999998 49999999999999
Q ss_pred Hhhh-hhcccCCCCchhhhhhhhccccCCeEeeecccCCCCC
Q 003497 625 KASD-EWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLP 665 (815)
Q Consensus 625 ~~~~-~~~~~~~~g~~~~~l~~y~~~~dg~~h~~d~~~~~~p 665 (815)
|++| +-|| ...+.+.++++ |+--+...|+++-.
T Consensus 467 AR~kIr~~~--k~~~re~~i~~------G~~lLe~~l~~~g~ 500 (701)
T COG0317 467 ARAKIRAWF--KKQDRDENVEA------GRELLEKELSRLGL 500 (701)
T ss_pred HHHHHHHHH--HHHHHHhHHHH------HHHHHHHHHHHcCC
Confidence 9999 6666 89999999999 99999999988765
No 2
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=100.00 E-value=9.9e-119 Score=1046.87 Aligned_cols=449 Identities=29% Similarity=0.471 Sum_probs=392.0
Q ss_pred cCCCCCCHHHHHHHHHHHHHhhcCCccccCcchhhhHHHHHHHHHHcCCCCCCChhHHHHHhhhccccccccCCHHHHHh
Q 003497 94 TGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEE 173 (815)
Q Consensus 94 ~~y~~~~~~~l~kA~~fA~~aH~GQ~RksGePYI~HpL~VA~ILa~L~~~~g~~D~dtIaAALLHDvVEDT~vTlEeI~~ 173 (815)
..|...+.+.|++||.||.++|.| |+||+|||+||++||.||+++++ |.++|+||||||+||||++|.++|++
T Consensus 25 ~~~~~~~~~~i~~A~~~a~~~H~g--r~sGepyi~Hpl~vA~iLa~~~~-----D~~ti~AaLLHD~vedt~~t~e~i~~ 97 (743)
T PRK10872 25 GITSQQSCERLAETWAYCLQQTQG--HPDASLLLWRGVEMVEILSTLSM-----DIDTLRAALLFPLADANVVSEDVLRE 97 (743)
T ss_pred HhhhHHHHHHHHHHHHHHHHhccC--CCCCChhhhhHHHHHHHHHHcCC-----CHHHHHHHHhhhhHhcCCCCHHHHHH
Confidence 445433457899999999999999 99999999999999999999985 78999999999999999999999999
Q ss_pred HhcHHHHHHHHHhhhchhhHHH-------HHHHHHHhhccCccc--------HHHHHHHHHhhHhhhcCCCchHHHHHHh
Q 003497 174 EFGDEVAKLVAGVSRLSYINQL-------LRRHRRINVNQGTLG--------HEELADRLHNMRTIYALPPAKARAVAQE 238 (815)
Q Consensus 174 ~FG~eVA~LV~gVTKls~i~~~-------~~~~~~~~~rk~~ls--------~vKLADRLhNMRTL~~lp~ekq~~iA~E 238 (815)
.||++||.||+||||++.+... ....+.+++|+++++ ++||||||||||||.++|++||++||+|
T Consensus 98 ~FG~~Va~lVdgvtKl~~i~~~~~~~~~~~~~~qae~~RKmllam~~DiRVilIKLADRLhnmrTl~~~~~~kq~~iA~E 177 (743)
T PRK10872 98 SVGKSIVNLIHGVRDMDAIRQLKATHNDSVSSEQVDNVRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEDERVLAAKE 177 (743)
T ss_pred HHCHHHHHHHHHHHHHHHhhhhhcccccchhHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhhcCChHHHHHHHHH
Confidence 9999999999999999988541 122367888887654 5799999999999999999999999999
Q ss_pred hhhhHhhhhhhhChHHHHHHHHHHHHHhcChHHHHHHHHHHhhccCCCcccccccccccccCCCCCccCccCCCCcccch
Q 003497 239 TLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTF 318 (815)
Q Consensus 239 Tl~IYAPLA~RLGi~~iK~ELEDLsF~~L~P~~Y~~i~~~l~~~w~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (815)
|++||||||||||||+||||||||||+||+|+.|+.|++.|.+
T Consensus 178 Tl~IyAPlA~RLGi~~iK~ELEDL~f~~l~P~~Y~~i~~~l~~------------------------------------- 220 (743)
T PRK10872 178 CTNIYAPLANRLGIGQLKWELEDYCFRYLHPDEYKRIAKLLHE------------------------------------- 220 (743)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------------------------------------
Confidence 9999999999999999999999999999999999999999976
Q ss_pred hhhhhhHHHhhhhccccchhhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhccCCCCCceEE
Q 003497 319 DEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVT 398 (815)
Q Consensus 319 ~~~~~~~k~ll~~v~~fd~~~~r~~r~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~~~~~~~~~~gi~~~ 398 (815)
+|.+|+.|++.+. ..+++.|++. |++++
T Consensus 221 ---------------------~~~~r~~~i~~~~----------------------~~l~~~L~~~---------~i~~~ 248 (743)
T PRK10872 221 ---------------------RRIDREHYIEEFV----------------------GHLRAEMKAE---------GVKAE 248 (743)
T ss_pred ---------------------HHHHHHHHHHHHH----------------------HHHHHHHHhc---------CCceE
Confidence 4778999998876 2355666653 88899
Q ss_pred EEEeecChhHHHHHHHhcCCCCCccccceeEEEEEcCCCCCCCCccHHHHHHHHHHHHhcCCcccccccccccCCCCCCC
Q 003497 399 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGY 478 (815)
Q Consensus 399 I~gR~K~~ySI~~Km~rk~~~~~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~ilgiIh~~~~pip~r~kDYIa~PK~nGY 478 (815)
|+||+||+||||+||++|+.+|++|+|++|+||||++ +.|||++||+||++|+|+|++|||||++||+|||
T Consensus 249 v~gR~K~~ySI~~Km~~k~~~~~~i~Di~a~RIIv~~---------~~dCY~vLg~ih~~~~pip~~fkDYIa~PK~NGY 319 (743)
T PRK10872 249 VYGRPKHIYSIWRKMQKKSLAFDELFDVRAVRIVAER---------LQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGY 319 (743)
T ss_pred EEeecCCHHHHHHHHHHcCCCHHHhccceeEEEEECC---------HHHHHHHHHHHHhhccCCcchhhhcccCCCCCCc
Confidence 9999999999999999999999999999999999985 8899999999999999999999999999999999
Q ss_pred ceeEEEEEcCCCcEEEEEEeechhhhHHHhhhhhhhhccccCCccccccccc------cchHHHhccCCCCCCCCCcccc
Q 003497 479 QSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMD------ESDIEASSSLSKDTDDHNPLDT 552 (815)
Q Consensus 479 qSLHt~V~~p~g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~~~~~~~~~~~~~------~~l~~~~~~~~~~~e~~~~~~~ 552 (815)
|||||+|.+|+|.++||||||..||.+||+|+||||+||++...++....++ +++.+|++...++.||++.+|.
T Consensus 320 qSLHttv~~~~g~~vEVQIRT~~Mh~~AE~GvAAHW~YKeg~~~~~~~~~~~~~~~wLr~lle~~~~~~d~~ef~e~~k~ 399 (743)
T PRK10872 320 QSIHTVVLGPGGKTVEIQIRTRQMHEDAELGVAAHWKYKEGAAAGGGRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRS 399 (743)
T ss_pred ceeEEEEECCCCcEEEEEEEcHHHHHHHhhhHHHHHhccCCCCccccccchHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998753210111223 3334555555556799999987
Q ss_pred c-------ccccccc---ccCCCceee-------ecCCeeeEEEEEEEccCCeeEEeecccccCCCCeEEEcCCCC--cc
Q 003497 553 D-------LFQKYSS---LKMGHPVIR-------VEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSF--QI 613 (815)
Q Consensus 553 d-------vftpkg~---lp~G~tv~~-------~iG~~c~gAkV~~v~~nGr~~lVpLs~~L~~GD~VeI~ts~~--p~ 613 (815)
| ||||+|+ ||.|+|++| .+|++|+|||| ||+ +||++|+|++||+|||+|+++ |+
T Consensus 400 dl~~d~V~VfTPkG~~~~Lp~gaT~lDfAy~iHt~iG~~~~gAkv-----ng~--~v~l~~~L~~GD~VeIits~~~~Ps 472 (743)
T PRK10872 400 QVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKI-----GGR--IVPFTYQLQMGDQIEIITQKQPNPS 472 (743)
T ss_pred HhcCCeEEEECCCCCeEEcCCCCcHHHHHHHHhHHHHhhceEEEE-----CCE--ECCCCcCCCCCCEEEEEeCCCCCCC
Confidence 6 5799997 799988655 49999999999 999 999999999999999999985 99
Q ss_pred hhHHH----HHHHhHHhhh-hhcccCCCCchhhhhhhhccccCCeEeeecccCC
Q 003497 614 KCWEA----YARLYKKASD-EWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGR 662 (815)
Q Consensus 614 ~dWL~----~v~t~k~~~~-~~~~~~~~g~~~~~l~~y~~~~dg~~h~~d~~~~ 662 (815)
+|||+ ||+|+||+++ +-|| ++.+.+.+++. |+-.+...|.+
T Consensus 473 ~dWL~~~lg~v~T~rAR~kIr~~~--k~~~~~~~i~~------Gr~lL~k~l~~ 518 (743)
T PRK10872 473 RDWLNPNLGYVTTSRGRSKIHAWF--RKQDRDKNILA------GRQILDDELEH 518 (743)
T ss_pred hhHhccccCeeeCHHHHHHHHHHH--HHHHHHHHHHH------HHHHHHHHHHh
Confidence 99999 9999999999 5554 66666666666 66655555544
No 3
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=100.00 E-value=4.6e-117 Score=1034.67 Aligned_cols=451 Identities=32% Similarity=0.484 Sum_probs=392.2
Q ss_pred CCCC-CCHHHHHHHHHHHHHhhcCCccccCcchhhhHHHHHHHHHHcCCCCCCChhHHHHHhhhccccccccCCHHHHHh
Q 003497 95 GYPI-FNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEE 173 (815)
Q Consensus 95 ~y~~-~~~~~l~kA~~fA~~aH~GQ~RksGePYI~HpL~VA~ILa~L~~~~g~~D~dtIaAALLHDvVEDT~vTlEeI~~ 173 (815)
.|.+ .+.+++++|+.||.++|.||+|++|+||+.||++||.||+++++ |.++++||||||++|||++|.++|++
T Consensus 13 ~~~~~~~~~~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~-----D~~ti~AaLLHDvvEDt~~t~e~i~~ 87 (702)
T PRK11092 13 TYLPEDQIKRLRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMRL-----DYETLMAALLHDVIEDTPATYQDMEQ 87 (702)
T ss_pred hhCCHHHHHHHHHHHHHHHHhccCCcCCCCCcHHHHHHHHHHHHHHcCC-----CHHHHHHhcccchhhhCCCCHHHHHH
Confidence 3443 34478999999999999999999999999999999999999874 68999999999999999999999999
Q ss_pred HhcHHHHHHHHHhhhchhhHHHHH-HHHHHhhccCcc--------cHHHHHHHHHhhHhhhcCCCchHHHHHHhhhhhHh
Q 003497 174 EFGDEVAKLVAGVSRLSYINQLLR-RHRRINVNQGTL--------GHEELADRLHNMRTIYALPPAKARAVAQETLLIWC 244 (815)
Q Consensus 174 ~FG~eVA~LV~gVTKls~i~~~~~-~~~~~~~rk~~l--------s~vKLADRLhNMRTL~~lp~ekq~~iA~ETl~IYA 244 (815)
.||++|+.||+||||++.++...+ ..+.++++++++ .++||||||||||||..+|+++|++||+||++|||
T Consensus 88 ~FG~~Va~lV~gvTk~~~l~~~~~~~~q~e~~rkmllam~~DiRVvlIKLADRlhNmrtL~~~~~ek~~~iA~ETl~iya 167 (702)
T PRK11092 88 LFGKSVAELVEGVSKLDKLKFRDKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETLEIYS 167 (702)
T ss_pred HHCHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHhcCCCceEEEEHHHHHhhHHHHHhcCccHHHHHHHHHHHHHH
Confidence 999999999999999987753211 124556666543 46799999999999999999999999999999999
Q ss_pred hhhhhhChHHHHHHHHHHHHHhcChHHHHHHHHHHhhccCCCcccccccccccccCCCCCccCccCCCCcccchhhhhhh
Q 003497 245 SLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLS 324 (815)
Q Consensus 245 PLA~RLGi~~iK~ELEDLsF~~L~P~~Y~~i~~~l~~~w~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (815)
|||||||||+||||||||||+||+|+.|+.|++.|.+
T Consensus 168 PlA~rlGi~~ik~eLedL~f~~l~P~~y~~i~~~~~~------------------------------------------- 204 (702)
T PRK11092 168 PLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVKA------------------------------------------- 204 (702)
T ss_pred HHHHHhChHHHHHHHHHHHHHhhCHHHHHHHHHHHHH-------------------------------------------
Confidence 9999999999999999999999999999999999876
Q ss_pred HHHhhhhccccchhhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhccCCCCCceEEEEEeec
Q 003497 325 MKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLK 404 (815)
Q Consensus 325 ~k~ll~~v~~fd~~~~r~~r~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~~~~~~~~~~gi~~~I~gR~K 404 (815)
.|.+|+.|++++. ..+++.|++. |++++|+||+|
T Consensus 205 ---------------~~~~r~~~i~~~~----------------------~~l~~~l~~~---------~i~~~i~~R~K 238 (702)
T PRK11092 205 ---------------ARGNRKEMIQKIL----------------------SEIEGRLQEA---------GIPCRVSGREK 238 (702)
T ss_pred ---------------HHHHHHHHHHHHH----------------------HHHHHHHHHc---------CCcEEEEeccC
Confidence 4678999998876 2355666663 88999999999
Q ss_pred ChhHHHHHHHhcCCCCCccccceeEEEEEcCCCCCCCCccHHHHHHHHHHHHhcCCcccccccccccCCCCCCCceeEEE
Q 003497 405 SLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTA 484 (815)
Q Consensus 405 ~~ySI~~Km~rk~~~~~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~ilgiIh~~~~pip~r~kDYIa~PK~nGYqSLHt~ 484 (815)
|+||||+||++|+.+|++|+|++|+||||++ +.|||++||+||++|+|+|++|||||++||+||||||||+
T Consensus 239 ~~ySI~~Km~~k~~~~~~i~Di~a~Riiv~~---------~~dCY~~lg~ih~~~~pip~~~kDyIa~PK~NgYqSLHt~ 309 (702)
T PRK11092 239 HLYSIYCKMVLKEQRFHSIMDIYAFRVIVDD---------SDTCYRVLGQMHSLYKPRPGRVKDYIAIPKANGYQSLHTS 309 (702)
T ss_pred CHHHHHHHHHHcCCChhHhccceeEEEEECC---------HHHHHHHHHHHHhcCCCCcCccccccCCCCCCCCceEEEE
Confidence 9999999999999999999999999999985 8899999999999999999999999999999999999999
Q ss_pred EEcCCCcEEEEEEeechhhhHHHhhhhhhhhccccCCcccccc-c---cccchHHHhccCCCCCCCCCccccc-------
Q 003497 485 VQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSIS-S---MDESDIEASSSLSKDTDDHNPLDTD------- 553 (815)
Q Consensus 485 V~~p~g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~~~~~~~~~~-~---~~~~l~~~~~~~~~~~e~~~~~~~d------- 553 (815)
|.+|+|.++||||||..||.+||+|+||||+||++........ . +-+++.+|++...++.||++.++.|
T Consensus 310 v~g~~g~~vEvQIRT~~Mh~~Ae~GvaAhW~yK~~~~~~~~~~~~~~~wlr~ll~~~~~~~~~~ef~~~~~~dl~~d~v~ 389 (702)
T PRK11092 310 MIGPHGVPVEVQIRTEDMDQMAEMGVAAHWAYKEHGETGTTAQIRAQRWMQSLLELQQSAGSSFEFIESVKSDLFPDEIY 389 (702)
T ss_pred EECCCCcEEEEEEEcHHHHHHHhhhhHhhhhhccCCCccchhHHHHHHHHHHHHHHHhhcCChHHHHHHHHhhhccceEE
Confidence 9999999999999999999999999999999998643211100 1 1123445555555667999999876
Q ss_pred ccccccc---ccCCCceeee-------cCCeeeEEEEEEEccCCeeEEeecccccCCCCeEEEcCCCC--cchhHHHHHH
Q 003497 554 LFQKYSS---LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSF--QIKCWEAYAR 621 (815)
Q Consensus 554 vftpkg~---lp~G~tv~~~-------iG~~c~gAkV~~v~~nGr~~lVpLs~~L~~GD~VeI~ts~~--p~~dWL~~v~ 621 (815)
||||||+ ||.|+|++|| |||||+|||| ||+ +|||+|+|+|||+|||+|+++ |++|||+||+
T Consensus 390 VfTP~G~v~~LP~GaT~lDFAY~iHt~iG~~c~gAkV-----Ng~--~vpL~~~L~~Gd~VeIiT~~~~~P~~dWL~~v~ 462 (702)
T PRK11092 390 VFTPEGRIVELPAGATPVDFAYAVHTDIGHACVGARV-----DRQ--PYPLSQPLTSGQTVEIITAPGARPNAAWLNFVV 462 (702)
T ss_pred EECCCCCEEeCCCCCchhhhhHhhCchhhceeEEEEE-----CCE--ECCCCccCCCCCEEEEEeCCCCCCChHHHHHhh
Confidence 5799997 7999886554 9999999999 999 999999999999999999984 9999999999
Q ss_pred HhHHhhh-hhcccCCCCchhhhhhhhccccCCeEeeecccCCC
Q 003497 622 LYKKASD-EWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRL 663 (815)
Q Consensus 622 t~k~~~~-~~~~~~~~g~~~~~l~~y~~~~dg~~h~~d~~~~~ 663 (815)
|+||+++ +-|| ++.+.+.+++. |+--+...|.+.
T Consensus 463 T~rAr~kIr~~~--r~~~~~~~i~~------Gr~lL~~~l~~~ 497 (702)
T PRK11092 463 SSKARAKIRQLL--KNLKRDDSVSL------GRRLLNHALGGS 497 (702)
T ss_pred hHHHHHHHHHHH--HhhhHHHHHHH------HHHHHHHHHHhc
Confidence 9999999 5555 77777777777 777776666654
No 4
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=100.00 E-value=3.3e-110 Score=978.37 Aligned_cols=437 Identities=35% Similarity=0.550 Sum_probs=378.3
Q ss_pred HHHHHHHhhcCCccccCcchhhhHHHHHHHHHHcCCCCCCChhHHHHHhhhccccccccCCHHHHHhHhcHHHHHHHHHh
Q 003497 107 AIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGV 186 (815)
Q Consensus 107 A~~fA~~aH~GQ~RksGePYI~HpL~VA~ILa~L~~~~g~~D~dtIaAALLHDvVEDT~vTlEeI~~~FG~eVA~LV~gV 186 (815)
|+.||.++|.||+|++|+||+.||++||.+|+++++ |.++++||||||++|||++|.++|++.||++|+.||++|
T Consensus 1 A~~~A~~aH~gQ~rksg~PYi~Hpl~VA~iL~~~~~-----D~~~i~AaLLHDvvEDt~~t~e~i~~~FG~~Va~lV~~v 75 (683)
T TIGR00691 1 ALEIAKDLHEGQKRKSGEPYIIHPLAVALILAELGM-----DEETVCAALLHDVIEDTPVTEEEIEEEFGEEVAELVDGV 75 (683)
T ss_pred CHHHHHHhcccCcCCCCCcHHHHHHHHHHHHHHhCC-----CHHHHHHHhccchHhcCCCCHHHHHHHHCHHHHHHHHHH
Confidence 688999999999999999999999999999999874 689999999999999999999999999999999999999
Q ss_pred hhchhhHHHHHH-HHHHhhccC--------cccHHHHHHHHHhhHhhhcCCCchHHHHHHhhhhhHhhhhhhhChHHHHH
Q 003497 187 SRLSYINQLLRR-HRRINVNQG--------TLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKA 257 (815)
Q Consensus 187 TKls~i~~~~~~-~~~~~~rk~--------~ls~vKLADRLhNMRTL~~lp~ekq~~iA~ETl~IYAPLA~RLGi~~iK~ 257 (815)
||++.++...+. .+.++++++ ++.++||||||||||||..+|+++|+++|+||++||||||||||||+|||
T Consensus 76 Tk~~~~~~~~~~~~q~e~~rkmlla~~~d~rvvlVKLADrlhNmrtl~~~~~~k~~~iA~Et~~iyaPlA~rLG~~~ik~ 155 (683)
T TIGR00691 76 TKITKLKKKSRQELQAENFRKMILAMAQDIRVIVIKLADRLHNMRTLDFLPPEKQKRIAKETLEIYAPLAHRLGMSSIKT 155 (683)
T ss_pred HHhcccccchhhHHHHHHHHHHHHhhcCCcceEeeeHHHHHhHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence 999887542211 233455544 34468999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcChHHHHHHHHHHhhccCCCcccccccccccccCCCCCccCccCCCCcccchhhhhhhHHHhhhhccccch
Q 003497 258 ELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDI 337 (815)
Q Consensus 258 ELEDLsF~~L~P~~Y~~i~~~l~~~w~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ll~~v~~fd~ 337 (815)
|||||||+||+|+.|+.|++.|++
T Consensus 156 eLedl~f~~l~p~~y~~i~~~l~~-------------------------------------------------------- 179 (683)
T TIGR00691 156 ELEDLSFKYLYPKEYENIKSLVNE-------------------------------------------------------- 179 (683)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH--------------------------------------------------------
Confidence 999999999999999999999986
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhccCCCCCceEEEEEeecChhHHHHHHHhcC
Q 003497 338 LSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKD 417 (815)
Q Consensus 338 ~~~r~~r~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~~~~~~~~~~gi~~~I~gR~K~~ySI~~Km~rk~ 417 (815)
.|.+|+.+++.+. +.+++.|.+. |++++|+||+|++||||+||++|+
T Consensus 180 --~~~~~~~~~~~~~----------------------~~l~~~l~~~---------~i~~~i~~R~K~~~Si~~Km~~k~ 226 (683)
T TIGR00691 180 --QKVNRENKLEKFK----------------------SELEKRLEDS---------GIEAELEGRSKHLYSIYQKMTRKG 226 (683)
T ss_pred --HHHHHHHHHHHHH----------------------HHHHHHHHhc---------CCceEEEeeeCCHHHHHHHHHhcC
Confidence 4678899998876 2345566553 788999999999999999999999
Q ss_pred CCCCccccceeEEEEEcCCCCCCCCccHHHHHHHHHHHHhcCCcccccccccccCCCCCCCceeEEEEEcCCCcEEEEEE
Q 003497 418 VGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQI 497 (815)
Q Consensus 418 ~~~~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~ilgiIh~~~~pip~r~kDYIa~PK~nGYqSLHt~V~~p~g~~vEIQI 497 (815)
.+|++|+|++|+||||++ +.|||++||+||++|+|+|++|||||++||+||||||||+|.+|+|.++||||
T Consensus 227 ~~~~~i~Di~~~RIi~~~---------~~dcy~vlg~ih~~~~p~~~~~kDyIa~PK~nGYqSlHt~v~~~~g~~~EvQI 297 (683)
T TIGR00691 227 QNFDEIHDLLAIRIIVKS---------ELDCYRVLGIIHLLFKPIPGRFKDYIASPKENGYQSLHTTVRGPKGLPVEIQI 297 (683)
T ss_pred CCHHHcccceeEEEEECC---------HHHHHHHHHHHHhcCCCCcccccccccCCCCCCcceeEEEEEcCCCCEEEEEE
Confidence 999999999999999985 88999999999999999999999999999999999999999999999999999
Q ss_pred eechhhhHHHhhhhhhhhccccCCcccccc---ccccchHHHhccCCCCCCCCCccccc-------ccccccc---ccCC
Q 003497 498 RTQKMHEYAEHGLAAHWLYKETGNKLQSIS---SMDESDIEASSSLSKDTDDHNPLDTD-------LFQKYSS---LKMG 564 (815)
Q Consensus 498 RT~~Mh~~AE~GiAAhw~YK~~~~~~~~~~---~~~~~l~~~~~~~~~~~e~~~~~~~d-------vftpkg~---lp~G 564 (815)
||..||+|||+|+||||+||++........ .+-+++.+|+....++.||++.+|.| ||||||+ ||.|
T Consensus 298 RT~~mh~~Ae~Gvaahw~yk~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~k~~l~~~~i~vfTPkG~~~~lp~g 377 (683)
T TIGR00691 298 RTEDMDRVAEYGIAAHWIYKEGNPQKEALIDDMRWLNYLVEWQQESANFFEFIENLKSDLFNEEIYVFTPKGDVVELPSG 377 (683)
T ss_pred EehHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHhhcccchhHHHHhhHHhccCceEEECCCCeEEEcCCC
Confidence 999999999999999999998643211111 11133455555555678999999876 5899997 7999
Q ss_pred Cceee-------ecCCeeeEEEEEEEccCCeeEEeecccccCCCCeEEEcCCC--CcchhHHHHHHHhHHhhh-hhcccC
Q 003497 565 HPVIR-------VEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPS--FQIKCWEAYARLYKKASD-EWWCQP 634 (815)
Q Consensus 565 ~tv~~-------~iG~~c~gAkV~~v~~nGr~~lVpLs~~L~~GD~VeI~ts~--~p~~dWL~~v~t~k~~~~-~~~~~~ 634 (815)
+|++| .+|++|+|||| ||+ +|||+++|++||+|||+|++ +|+++||+||+|+||+++ +-||
T Consensus 378 st~~DfAy~ih~~~g~~~~~a~v-----ng~--~v~l~~~l~~gd~vei~t~~~~~P~~dWL~~v~T~rAR~kIr~~~-- 448 (683)
T TIGR00691 378 STPVDFAYAVHTDVGNKCTGAKV-----NGK--IVPLDKELENGDVVEIITGKNSNPSVIWLNFVVTSKARNKIRQWL-- 448 (683)
T ss_pred CCHHHHHHHHhHHhHhceeEEEE-----CCE--ECCCCccCCCCCEEEEEeCCCCCCCHHHHHHHhhHHHHHHHHHHH--
Confidence 88655 49999999999 999 99999999999999999998 499999999999999999 4443
Q ss_pred CCCchhhhhhhhccccCCeEeeecccC
Q 003497 635 GHGDWCTCLEKYTLCRDGMYHKQDQFG 661 (815)
Q Consensus 635 ~~g~~~~~l~~y~~~~dg~~h~~d~~~ 661 (815)
+..+.+.+++. |+--+...|.
T Consensus 449 k~~~r~~~i~~------G~~lLek~l~ 469 (683)
T TIGR00691 449 KKLRREVAISE------GKNILEKELG 469 (683)
T ss_pred HHHHHHHHHHH------HHHHHHHHHH
Confidence 55556666655 5544444443
No 5
>KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-71 Score=594.93 Aligned_cols=321 Identities=43% Similarity=0.629 Sum_probs=278.3
Q ss_pred CCCHHHHHHHHHHHHHhhcCCccccCc-chhhhHHHHHHHHHHcCCCCCCChhHHHHHhhhccccccccCCHHHHHhHhc
Q 003497 98 IFNDEQVQKAIAFAKRAHHGQFRKTGD-PYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFG 176 (815)
Q Consensus 98 ~~~~~~l~kA~~fA~~aH~GQ~RksGe-PYI~HpL~VA~ILa~L~~~~g~~D~dtIaAALLHDvVEDT~vTlEeI~~~FG 176 (815)
.++.+++-+|+.+|+.+|.||+|+++. ||+.||+.+|.||++++. |...++||+||||||||.+|.++|++.||
T Consensus 71 t~~s~lv~KAl~~Aa~~HR~Q~Rad~~rPY~nH~i~ta~iLAd~~~-----ds~Vv~AaiLHDVVDDt~~S~eeI~~~FG 145 (543)
T KOG1157|consen 71 TFSSELVIKALYEAAKAHRGQMRADDDRPYLNHCIETAMILADIGA-----DSTVVVAAILHDVVDDTFMSYEEILRHFG 145 (543)
T ss_pred cCcHHHHHHHHHHHHHHHhcccccCCCCchhhhHHHHHHHHHHhhc-----chHHHHHHHHHHHHhhccCCHHHHHHHhC
Confidence 456778999999999999999999754 999999999999999975 67899999999999999999999999999
Q ss_pred HHHHHHHHHhhhchhhHHHHHHHH-H-Hhhcc------CcccHHHHHHHHHhhHhhhcCCCchHHHHHHhhhhhHhhhhh
Q 003497 177 DEVAKLVAGVSRLSYINQLLRRHR-R-INVNQ------GTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 248 (815)
Q Consensus 177 ~eVA~LV~gVTKls~i~~~~~~~~-~-~~~rk------~~ls~vKLADRLhNMRTL~~lp~ekq~~iA~ETl~IYAPLA~ 248 (815)
..||.||++||+.+++++..+... + +.++. -++.++||||||||||+|..+||-+|++.++||+.||||+||
T Consensus 146 ~gVa~LV~EvtddKnL~K~eRk~l~qiet~~~fyak~s~RAvLIkLADKLdNMRdL~~lpPvgwq~~r~e~lfIwapla~ 225 (543)
T KOG1157|consen 146 TGVADLVEEVTDDKNLSKLERKNLTQIETVEMFYAKASARAVLIKLADKLDNMRDLYALPPVGWQRFRKETLFIWAPLAN 225 (543)
T ss_pred ccHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhHHHHHHHHHHhhHHHH
Confidence 999999999999999987543321 1 11111 134478999999999999999999999999999999999999
Q ss_pred hhChHHHHHHHHHHHHHhcChHHHHHHHHHHhhccCCCcccccccccccccCCCCCccCccCCCCcccchhhhhhhHHHh
Q 003497 249 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDL 328 (815)
Q Consensus 249 RLGi~~iK~ELEDLsF~~L~P~~Y~~i~~~l~~~w~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l 328 (815)
++|++..+.+||||||+||+|..|-++..+|...
T Consensus 226 ~~g~gtn~~lle~Ldf~~l~p~~~~~m~s~l~~~---------------------------------------------- 259 (543)
T KOG1157|consen 226 RLGIGTNKVLLENLDFKHLFPCQHIEMSSMLEDS---------------------------------------------- 259 (543)
T ss_pred HhcccchHHHHhhhhHHHhCchhHHHHHHHHhcc----------------------------------------------
Confidence 9999999999999999999999999999998741
Q ss_pred hhhccccchhhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhccCCCCCce-EEEEEeecChh
Q 003497 329 LEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGME-VTLSSRLKSLY 407 (815)
Q Consensus 329 l~~v~~fd~~~~r~~r~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~~~~~~~~~~gi~-~~I~gR~K~~y 407 (815)
|| +..|...+ ..+++.|..+ |+. +-|+||.|++|
T Consensus 260 ------~~--------~~mi~~~~----------------------~~l~~~l~~a---------~i~~~~i~gr~ks~y 294 (543)
T KOG1157|consen 260 ------FD--------EAMITSAI----------------------EKLEQALKKA---------GISYHVIKGRHKSLY 294 (543)
T ss_pred ------cc--------hHHHHHHH----------------------HHHHHHHHhc---------cceeEEEecchhhHH
Confidence 11 11122111 1233444443 443 67999999999
Q ss_pred HHHHHHHhcCCCCCccccceeEEEEEcCCCCCCCCccHHHHHHHHHHHHhcCCcccccccccccCCCCCCCceeEEEEEc
Q 003497 408 SIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQG 487 (815)
Q Consensus 408 SI~~Km~rk~~~~~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~ilgiIh~~~~pip~r~kDYIa~PK~nGYqSLHt~V~~ 487 (815)
|||+||.|++...+||+|+.|+|+||++ ..|||+.+|+||++|..+|++.||||+.||.||||||||+|.+
T Consensus 295 si~~kmlk~~~~~dei~di~glr~i~~~---------~~~cyk~~~vv~slw~evp~k~kdyia~pk~ngy~slh~~v~~ 365 (543)
T KOG1157|consen 295 SIYKKMLKKKLTPDEIHDIHGLRLIVDN---------ESDCYKALGVVHSLWSEVPGKLKDYIAHPKFNGYQSLHTVVMV 365 (543)
T ss_pred HHHHHHHhcCCCHHHhhhhcceEEEEcC---------chHHHHHHHHHHHHHHhCcchhhhhhcCccccccceeeeEEec
Confidence 9999999999999999999999999996 5699999999999999999999999999999999999999998
Q ss_pred CCCcEEEEEEeechhhhHHHhhhhhhhhccccCCcc
Q 003497 488 PDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKL 523 (815)
Q Consensus 488 p~g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~~~~~~ 523 (815)
..-.|+||||||..||--||+|.||||+||+|...+
T Consensus 366 d~~~plevqirt~em~~~a~~g~aah~~yk~g~~~~ 401 (543)
T KOG1157|consen 366 DGTRPLEVQIRTMEMHLQAEFGFAAHWRYKEGKTSS 401 (543)
T ss_pred CCcceeEEEEeeeccccccccchhhHhhhhcCCCCH
Confidence 666799999999999999999999999999985543
No 6
>PF13328 HD_4: HD domain; PDB: 3NR1_B.
Probab=100.00 E-value=1e-33 Score=276.29 Aligned_cols=141 Identities=43% Similarity=0.669 Sum_probs=89.3
Q ss_pred HHHHHHHhhcCCccccCcchhhhHHHHHHHHHHcCCCCCCChhHHHHHhhhccccccccCCHHHHHhHhcHHHHHHHHHh
Q 003497 107 AIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGV 186 (815)
Q Consensus 107 A~~fA~~aH~GQ~RksGePYI~HpL~VA~ILa~L~~~~g~~D~dtIaAALLHDvVEDT~vTlEeI~~~FG~eVA~LV~gV 186 (815)
|+.||.++|.||++++|+||+.||++||.+|++++. |.++++||||||++|||..+ ++|++.||++|+++|.++
T Consensus 1 A~~~A~~~h~~~~~~~g~py~~H~~~va~~l~~~~~-----d~~~i~aalLHD~ied~~~~-~~i~~~fg~~V~~lV~~l 74 (153)
T PF13328_consen 1 ALAFAAEAHAGQRRKSGEPYISHPLEVAEILAELGL-----DEETIAAALLHDVIEDTETT-EDIEERFGEDVADLVDAL 74 (153)
T ss_dssp HHHHHHHHTTT-B-ST--BTTHHHHHHHHHHHTS--------HHHHHHHHHTTHHHHSS---HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHcCC-----CHHHHhhheeecHHHhcCCH-HHHHHccChHHHHHHHHH
Confidence 789999999999999999999999999999998874 68999999999999999555 999999999999999999
Q ss_pred hhchhhHHH----HHHHHHHhhccC--------cccHHHHHHHHHhhHhhhcCCCchHHHHHHhhhhhHhhhhhhhChH
Q 003497 187 SRLSYINQL----LRRHRRINVNQG--------TLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 253 (815)
Q Consensus 187 TKls~i~~~----~~~~~~~~~rk~--------~ls~vKLADRLhNMRTL~~lp~ekq~~iA~ETl~IYAPLA~RLGi~ 253 (815)
|+++.+... ......+.++++ .+.++||||||||||++...|+++++++|+||++||+|||||||||
T Consensus 75 t~~~~~~~~~~~~~~~~~~~~~r~ml~~~~~d~~~~lIKlaDrl~nl~~~~~~~~~~~~~~a~Et~~i~apLA~rLGiw 153 (153)
T PF13328_consen 75 TKIKKLSKKPWEERSEEYAERLRRMLLAMSEDVRAVLIKLADRLHNLRTIKYLPPEKQRRYARETLDIYAPLAHRLGIW 153 (153)
T ss_dssp ---TTS-HH---HHHHHHHHHGGG-----S-H-HHHHHHHHHHHHHHHHHHH---TT----------------------
T ss_pred HhccccccccchhhHHHHHHHhhhhccccCCchHHHHHHHHHHHHhhccHHHCCHHHhhhhhhccccccccccccccCC
Confidence 999887654 112233455553 3446899999999999999999999999999999999999999998
No 7
>PF04607 RelA_SpoT: Region found in RelA / SpoT proteins; InterPro: IPR007685 The functions of Escherichia coli RelA and SpoT differ somewhat. RelA (2.7.6.5 from EC) produces pppGpp (or ppGpp) from ATP and GTP (or GDP). SpoT (3.1.7.2 from EC) degrades ppGpp, but may also act as a secondary ppGpp synthetase. The two proteins are strongly similar. In many species, a single homologue to SpoT and RelA appears reponsible for both ppGpp synthesis and ppGpp degradation. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species. ; GO: 0015969 guanosine tetraphosphate metabolic process; PDB: 2BE3_B 1VJ7_B 3L9D_B.
Probab=99.95 E-value=4.4e-28 Score=224.82 Aligned_cols=108 Identities=37% Similarity=0.548 Sum_probs=93.7
Q ss_pred EeecChhHHHHHHHhcCC---CCCccccceeEEEEEcCCCCCCCCccHHHHHHHHHHHHhcCCcccccccccccCCCCCC
Q 003497 401 SRLKSLYSIFSKMRRKDV---GIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSG 477 (815)
Q Consensus 401 gR~K~~ySI~~Km~rk~~---~~~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~ilgiIh~~~~pip~r~kDYIa~PK~nG 477 (815)
+|+|+++|+++|+.|++. ++.+|+|++|+||||.. .+|||.++++|++.|.+.+.+++|||+.||.||
T Consensus 1 ~RvK~~~Sl~~Kl~r~~~~~~~~~~i~Dl~G~RIi~~~---------~~d~~~v~~~l~~~~~~~~~~~~d~i~~~~~~G 71 (115)
T PF04607_consen 1 SRVKSPESLIEKLRRKGGPDNPLKDIQDLVGIRIIVYF---------PDDCYKVLGLLHKLFDVKIDRSKDYIANPKSNG 71 (115)
T ss_dssp EEE--HHHHHHCHHHHTGCCCCCCCTCCSEEEEEEESS---------CCHHHHHHHHHHTHSSCEEEEEEETTTT--TTS
T ss_pred CCCCCHHHHHHHHHhHCCCcccHHHhccccEEEEEEee---------HHHHHHHHHHHHHcCCcccccccccccccccCC
Confidence 699999999999999875 78999999999999985 679999999999999999999999999999999
Q ss_pred CceeEEEE---EcCCCcEEEEEEeechhhhHHHhhhhhhhhcccc
Q 003497 478 YQSLHTAV---QGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET 519 (815)
Q Consensus 478 YqSLHt~V---~~p~g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~~ 519 (815)
|||+|++| ..+.+.++||||||.+||.|||..| ||.||.+
T Consensus 72 Yrs~H~~v~~~~~~~~~~~EiQIrT~~~~~waei~h--~~~YK~~ 114 (115)
T PF04607_consen 72 YRSLHYIVPENESFKGYPFEIQIRTLLQHAWAEIEH--DLRYKSS 114 (115)
T ss_dssp --EEEEEEEETTECEEEEEEEEEEEHHHHHHHHHHH--HHHHHCT
T ss_pred cEeeEeeeeecccCCCceeeeeeccHHHHHHHHHHH--HHhCCCC
Confidence 99999999 3457889999999999999999554 8999964
No 8
>cd05399 NT_Rel-Spo_like Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases. This family includes the catalytic domains of Escherichia coli ppGpp synthetase (RelA), ppGpp synthetase/hydrolase (SpoT), and related proteins. RelA synthesizes (p)ppGpp in response to amino-acid starvation and in association with ribosomes. (p)ppGpp triggers the bacterial stringent response. SpoT catalyzes (p)ppGpp synthesis under carbon limitation in a ribosome-independent manner. It also catalyzes (p)ppGpp degradation. Gram-negative bacteria have two enzymes involved in (p)ppGpp metabolism while most Gram-positive organisms have a single Rel-Spo enzyme (Rel), which both synthesizes and degrades (p)ppGpp. The Arabidopsis thaliana Rel-Spo proteins, At-RSH1,-2, and-3 appear to regulate a rapid (p)ppGpp-mediated response to pathogens and other stresses. This catalytic domain is found in association with an N-terminal HD domain and a C-terminal metal dependent phosphohydro
Probab=99.94 E-value=3.5e-27 Score=223.68 Aligned_cols=118 Identities=42% Similarity=0.714 Sum_probs=105.3
Q ss_pred HHHHHHHHHHhhccCCCCCceEEEEEeecChhHHHHHHHhcCCCC---CccccceeEEEEEcCCCCCCCCccHHHHHHHH
Q 003497 376 ACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGI---HKVYDARALRVVVGDKNGTLHGPAIQCCYSLL 452 (815)
Q Consensus 376 ~~~~~L~~~~~~~~~~~~gi~~~I~gR~K~~ySI~~Km~rk~~~~---~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~il 452 (815)
.|++.|++.... +..+.|++|+|+++|+++||.+++.+. ++|+|++|+||||+. ..|||.++
T Consensus 6 ~l~~~L~~~~~~------~~~~~v~~RvK~~~sl~~Kl~~~~~~~~~~~~i~Dl~g~Rii~~~---------~~d~~~v~ 70 (129)
T cd05399 6 EIADLLRDAGII------GRVASVSGRVKSPYSIYEKLRRKGKDLPILDEITDLVGVRVVLLF---------VDDCYRVL 70 (129)
T ss_pred HHHHHHHHcCCC------CCCcEEEEecCCHHHHHHHHHhhCCCCCcHHHhhhhheEEEEEeC---------HHHHHHHH
Confidence 456666664110 125789999999999999999998777 999999999999985 78999999
Q ss_pred HHHHhcCCcccccccccccCCCCCCCceeEEEEEcCC---CcEEEEEEeechhhhHHHh
Q 003497 453 DIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD---GSALEVQIRTQKMHEYAEH 508 (815)
Q Consensus 453 giIh~~~~pip~r~kDYIa~PK~nGYqSLHt~V~~p~---g~~vEIQIRT~~Mh~~AE~ 508 (815)
+.|++.|+++|++++|||+.||+|||||+|++|..++ |.++||||||..||.|||.
T Consensus 71 ~~l~~~f~~~~~~~~D~~~~p~~~GYrslH~~~~~~~~~~~~~~EIQirT~~~~~wae~ 129 (129)
T cd05399 71 DLLHSLFKVIPGRVKDYIAEPKENGYQSLHLVVRGPEDKAGVLIEIQIRTILMHAWAEL 129 (129)
T ss_pred HHHHhCCcccCccccCCcCCCCCCCceEEEEEEEcCCCcCCcEEEEEeCCHHHHHHhcC
Confidence 9999999999999999999999999999999999887 8999999999999999984
No 9
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=99.93 E-value=5.4e-27 Score=272.67 Aligned_cols=91 Identities=30% Similarity=0.446 Sum_probs=86.3
Q ss_pred hhHHHHHHHHHHHHHhhhhhhHHhhhccCCCCCCCCCCCCCCceEEEEcCCCCeEeCCCCCCHHHHHHHhC--CCCce--
Q 003497 716 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVG--LEGKL-- 791 (815)
Q Consensus 716 ~~k~~wlr~~lewq~e~~~~~~~~~~~~~~~f~~~~k~~l~~~~v~VftP~G~i~~Lp~GsT~~DfAy~ih--v~~~~-- 791 (815)
.+++.|||+++|||++..|+.|| ++++|.|||+|+||||||||+|++||.||||+||||+|| +|++|
T Consensus 354 ~~~~~Wlr~lle~q~~~~d~~ef---------~e~~k~dlf~d~VyvfTPkG~vi~LP~GatplDFAY~vHt~iG~~c~g 424 (701)
T COG0317 354 EEKIAWLRQLLEWQEESADSGEF---------LEQLKSDLFPDRVYVFTPKGKVIDLPKGATPLDFAYAVHTDIGHRCIG 424 (701)
T ss_pred hHHHHHHHHHHHHHHhcCCcHHH---------HHHHhhcccCceEEEECCCCCEEeCCCCCcchhhhhhhhchhcceeeE
Confidence 67999999999999999876554 799999999999999999999999999999999999999 99998
Q ss_pred EEECCEEeCCCccCCCCCEEEEeC
Q 003497 792 VLVNGQLVLPNTELKDGDIVEVRV 815 (815)
Q Consensus 792 ~~VNg~lvpl~~~L~~GD~VeI~t 815 (815)
|||||++|||+|+|+|||+|||+|
T Consensus 425 AkVnG~ivpl~~~Lk~Gd~VEIit 448 (701)
T COG0317 425 AKVNGRIVPLTTKLQTGDQVEIIT 448 (701)
T ss_pred EEECCEEeccceecCCCCEEEEEe
Confidence 599999999999999999999997
No 10
>COG2357 PpGpp synthetase catalytic domain [General function prediction only]
Probab=99.93 E-value=6.9e-26 Score=232.90 Aligned_cols=132 Identities=32% Similarity=0.411 Sum_probs=113.1
Q ss_pred HHHHHHHhhccCCCCCceEEEEEeecChhHHHHHHHhcCCCC------CccccceeEEEEEcCCCCCCCCccHHHHHHHH
Q 003497 379 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGI------HKVYDARALRVVVGDKNGTLHGPAIQCCYSLL 452 (815)
Q Consensus 379 ~~L~~~~~~~~~~~~gi~~~I~gR~K~~ySI~~Km~rk~~~~------~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~il 452 (815)
..+..++.....+.|..+ |++|+|++.||..|++|||.++ ++|+|++|+||+|. |++|.|.+.
T Consensus 37 ~~~~~~~~~~~~~~pie~--Vt~RvK~~~Si~~Kl~RK~~~i~~~~~~e~i~DIaGIRI~c~---------F~~DI~~v~ 105 (231)
T COG2357 37 KILRDEYEKLHDYNPIEH--VTSRVKSPESILEKLRRKGLEITYENLKEDIQDIAGIRIICQ---------FVDDIYRVV 105 (231)
T ss_pred HHHHHHHHhhcCCCchHH--HhhccCCHHHHHHHHHhcCCCCChHHHHhHHHhhcceeEeee---------hHhhHHHHH
Confidence 345556666677777654 7999999999999999999543 58999999999998 589999999
Q ss_pred HHHHhcCCcccccccccccCCCCCCCceeEEEEEcCC-------CcEEEEEEeechhhhHHHhhhhhhhhccccCCcc
Q 003497 453 DIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD-------GSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKL 523 (815)
Q Consensus 453 giIh~~~~pip~r~kDYIa~PK~nGYqSLHt~V~~p~-------g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~~~~~~ 523 (815)
.+|.+...-.....||||.+||+|||||+|++|..|- +..+||||||.+||.||++.| ..+||.++..|
T Consensus 106 ~~l~~~~d~~iv~~kDyi~n~k~~GYRS~Hlive~pv~~~~~~~~~~vEIQIRTiam~fWAsiEH--~l~YKy~~~~P 181 (231)
T COG2357 106 DLLKSRKDFTIVEEKDYIRNPKPNGYRSYHLILEVPVFTINGVKKVRVEIQIRTIAMDFWASIEH--KLRYKYGGEVP 181 (231)
T ss_pred HHHhcccCccchhHHHHHhCCCCCCCceEEEEEeccchhhccccceEEEEehhHHHHHHHHHHHH--HhhccccccCh
Confidence 9999876555568999999999999999999999773 379999999999999999999 57999877665
No 11
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=99.92 E-value=7.8e-26 Score=266.63 Aligned_cols=91 Identities=22% Similarity=0.249 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHHHHhhhhhhHHhhhccCCCCCCCCCCCCCCceEEEEcCCCCeEeCCCCCCHHHHHHHhC--CCCce--
Q 003497 716 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVG--LEGKL-- 791 (815)
Q Consensus 716 ~~k~~wlr~~lewq~e~~~~~~~~~~~~~~~f~~~~k~~l~~~~v~VftP~G~i~~Lp~GsT~~DfAy~ih--v~~~~-- 791 (815)
.++++|||+|++||++..++.+| ++.+|.|||+++||||||+|+|+.||.||||+||||+|| +|++|
T Consensus 353 ~~~~~wlr~ll~~~~~~~~~~ef---------~~~~~~dl~~d~v~VfTP~G~v~~LP~GaT~lDFAY~iHt~iG~~c~g 423 (702)
T PRK11092 353 IRAQRWMQSLLELQQSAGSSFEF---------IESVKSDLFPDEIYVFTPEGRIVELPAGATPVDFAYAVHTDIGHACVG 423 (702)
T ss_pred HHHHHHHHHHHHHHhhcCChHHH---------HHHHHhhhccceEEEECCCCCEEeCCCCCchhhhhHhhCchhhceeEE
Confidence 34588999999999987765555 689999999999999999999999999999999999999 99988
Q ss_pred EEECCEEeCCCccCCCCCEEEEeC
Q 003497 792 VLVNGQLVLPNTELKDGDIVEVRV 815 (815)
Q Consensus 792 ~~VNg~lvpl~~~L~~GD~VeI~t 815 (815)
|||||++|||+|+|+|||+|||+|
T Consensus 424 AkVNg~~vpL~~~L~~Gd~VeIiT 447 (702)
T PRK11092 424 ARVDRQPYPLSQPLTSGQTVEIIT 447 (702)
T ss_pred EEECCEECCCCccCCCCCEEEEEe
Confidence 699999999999999999999997
No 12
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=99.89 E-value=5.5e-24 Score=250.90 Aligned_cols=92 Identities=24% Similarity=0.433 Sum_probs=85.6
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhHHhhhccCCCCCCCCCCCCCCceEEEEcCCCCeEeCCCCCCHHHHHHHhC--CCCce-
Q 003497 715 INNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVG--LEGKL- 791 (815)
Q Consensus 715 ~~~k~~wlr~~lewq~e~~~~~~~~~~~~~~~f~~~~k~~l~~~~v~VftP~G~i~~Lp~GsT~~DfAy~ih--v~~~~- 791 (815)
+++++.|||+|+|||++..|+.+| ++++|.|||+++||||||+|+++.||.||||+||||+|| +|++|
T Consensus 370 ~~~~~~wLr~lle~~~~~~d~~ef---------~e~~k~dl~~d~V~VfTPkG~~~~Lp~gaT~lDfAy~iHt~iG~~~~ 440 (743)
T PRK10872 370 HEDRIAWLRKLIAWQEEMADSGEM---------LDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCI 440 (743)
T ss_pred hHHHHHHHHHHHHHHhccCCHHHH---------HHHHHHHhcCCeEEEECCCCCeEEcCCCCcHHHHHHHHhHHHHhhce
Confidence 577899999999999987776665 689999999999999999999999999999999999999 88877
Q ss_pred -EEECCEEeCCCccCCCCCEEEEeC
Q 003497 792 -VLVNGQLVLPNTELKDGDIVEVRV 815 (815)
Q Consensus 792 -~~VNg~lvpl~~~L~~GD~VeI~t 815 (815)
|||||++|||+|+|+|||+|||+|
T Consensus 441 gAkvng~~v~l~~~L~~GD~VeIit 465 (743)
T PRK10872 441 GAKIGGRIVPFTYQLQMGDQIEIIT 465 (743)
T ss_pred EEEECCEECCCCcCCCCCCEEEEEe
Confidence 699999999999999999999997
No 13
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=99.87 E-value=1.4e-22 Score=239.41 Aligned_cols=91 Identities=31% Similarity=0.444 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHHHHHhhhhhhHHhhhccCCCCCCCCCCCCCCceEEEEcCCCCeEeCCCCCCHHHHHHHhC--CCCce--
Q 003497 716 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVG--LEGKL-- 791 (815)
Q Consensus 716 ~~k~~wlr~~lewq~e~~~~~~~~~~~~~~~f~~~~k~~l~~~~v~VftP~G~i~~Lp~GsT~~DfAy~ih--v~~~~-- 791 (815)
+.++.|||+|++||++..|+.+ |++.+|.|+|.++||||||+|+++.||.||||+||||+|| +|++|
T Consensus 327 ~~~~~wl~~~~~~~~~~~~~~~---------~~~~~k~~l~~~~i~vfTPkG~~~~lp~gst~~DfAy~ih~~~g~~~~~ 397 (683)
T TIGR00691 327 IDDMRWLNYLVEWQQESANFFE---------FIENLKSDLFNEEIYVFTPKGDVVELPSGSTPVDFAYAVHTDVGNKCTG 397 (683)
T ss_pred HHHHHHHHHHHHHHhhcccchh---------HHHHhhHHhccCceEEECCCCeEEEcCCCCCHHHHHHHHhHHhHhceeE
Confidence 5678999999999998766555 4799999999999999999999999999999999999999 88887
Q ss_pred EEECCEEeCCCccCCCCCEEEEeC
Q 003497 792 VLVNGQLVLPNTELKDGDIVEVRV 815 (815)
Q Consensus 792 ~~VNg~lvpl~~~L~~GD~VeI~t 815 (815)
|+|||++|||+|+|+|||+|||+|
T Consensus 398 a~vng~~v~l~~~l~~gd~vei~t 421 (683)
T TIGR00691 398 AKVNGKIVPLDKELENGDVVEIIT 421 (683)
T ss_pred EEECCEECCCCccCCCCCEEEEEe
Confidence 599999999999999999999997
No 14
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=99.49 E-value=1.5e-14 Score=121.39 Aligned_cols=56 Identities=41% Similarity=0.585 Sum_probs=51.4
Q ss_pred EEEEcCCCCeEeCCCCCCHHHHHHHhC--CCCc--eEEECCEEeCCCccCCCCCEEEEeC
Q 003497 760 VIVCWPNGEIMRLRSGSTAADAAMKVG--LEGK--LVLVNGQLVLPNTELKDGDIVEVRV 815 (815)
Q Consensus 760 v~VftP~G~i~~Lp~GsT~~DfAy~ih--v~~~--~~~VNg~lvpl~~~L~~GD~VeI~t 815 (815)
|.||+|+|++.+||.|+||.||||.|| ++.+ .++|||+.|.|+|+|++||+|||+|
T Consensus 1 I~v~lpdG~~~~~~~g~T~~d~A~~I~~~l~~~~~~A~Vng~~vdl~~~L~~~d~v~iiT 60 (60)
T PF02824_consen 1 IRVYLPDGSIKELPEGSTVLDVAYSIHSSLAKRAVAAKVNGQLVDLDHPLEDGDVVEIIT 60 (60)
T ss_dssp EEEEETTSCEEEEETTBBHHHHHHHHSHHHHHCEEEEEETTEEEETTSBB-SSEEEEEEE
T ss_pred CEEECCCCCeeeCCCCCCHHHHHHHHCHHHHhheeEEEEcCEECCCCCCcCCCCEEEEEC
Confidence 579999999999999999999999999 6664 4799999999999999999999997
No 15
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.90 E-value=1.2e-09 Score=96.32 Aligned_cols=48 Identities=27% Similarity=0.359 Sum_probs=42.7
Q ss_pred CCeEeCCCCCCHHHHHHHhC--CCCce-----EEECCEEeCCCccCCCCCEEEEeC
Q 003497 767 GEIMRLRSGSTAADAAMKVG--LEGKL-----VLVNGQLVLPNTELKDGDIVEVRV 815 (815)
Q Consensus 767 G~i~~Lp~GsT~~DfAy~ih--v~~~~-----~~VNg~lvpl~~~L~~GD~VeI~t 815 (815)
+|.+.||.|+|+.||||.|| +++.+ ++ |||.|+++|+|+|||+|+|+|
T Consensus 22 ~d~~~l~~GaTv~D~A~~IHtdi~~~f~~Ai~~k-~~~~vg~~~~L~dgDvV~Ii~ 76 (76)
T cd01669 22 PDAFLLPKGSTARDLAYAIHTDIGDGFLHAIDAR-TGRRVGEDYELKHRDVIKIVS 76 (76)
T ss_pred cceEEECCCCCHHHHHHHHHHHHHhcceeeEEee-CCEEeCCCcEecCCCEEEEeC
Confidence 57788899999999999999 66652 36 999999999999999999997
No 16
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.79 E-value=6.2e-09 Score=91.55 Aligned_cols=49 Identities=35% Similarity=0.358 Sum_probs=42.1
Q ss_pred CCeEeCCCCCCHHHHHHHhC--CCC--ceEE-------ECCEEeCCCccCCCCCEEEEeC
Q 003497 767 GEIMRLRSGSTAADAAMKVG--LEG--KLVL-------VNGQLVLPNTELKDGDIVEVRV 815 (815)
Q Consensus 767 G~i~~Lp~GsT~~DfAy~ih--v~~--~~~~-------VNg~lvpl~~~L~~GD~VeI~t 815 (815)
.+.+.||.|||+.|||++|| ++. +.+. +|||.|+++++|+|||+|||.+
T Consensus 16 ~~~liL~~GaTV~D~a~~iH~di~~~f~~A~v~g~s~~~~gq~Vgl~~~L~d~DvVeI~~ 75 (75)
T cd01666 16 DEPVILRRGSTVEDVCNKIHKDLVKQFKYALVWGSSVKHSPQRVGLDHVLEDEDVVQIVK 75 (75)
T ss_pred CCCEEECCCCCHHHHHHHHHHHHHHhCCeeEEeccCCcCCCeECCCCCEecCCCEEEEeC
Confidence 46789999999999999999 444 3344 5999999999999999999986
No 17
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=98.73 E-value=2.9e-08 Score=81.50 Aligned_cols=56 Identities=45% Similarity=0.568 Sum_probs=49.9
Q ss_pred EEEEcCCCCeEeCCCCCCHHHHHHHhCCC--C--ceEEECCEEeCCCccCCCCCEEEEeC
Q 003497 760 VIVCWPNGEIMRLRSGSTAADAAMKVGLE--G--KLVLVNGQLVLPNTELKDGDIVEVRV 815 (815)
Q Consensus 760 v~VftP~G~i~~Lp~GsT~~DfAy~ihv~--~--~~~~VNg~lvpl~~~L~~GD~VeI~t 815 (815)
+|||+|+|..+.+|.|.|+.|++..++.+ . ..++|||++++++++|++||.||++|
T Consensus 1 ~~~~~~~g~~~~~~~~~t~~~~~~~~~~~~~~~~va~~vng~~vdl~~~l~~~~~ve~v~ 60 (60)
T cd01668 1 IYVFTPKGEIIELPAGATVLDFAYAIHTEIGNRCVGAKVNGKLVPLSTVLKDGDIVEIIT 60 (60)
T ss_pred CEEECCCCCEEEcCCCCCHHHHHHHHChHhhhheEEEEECCEECCCCCCCCCCCEEEEEC
Confidence 58999999999999999999999888733 2 23599999999999999999999986
No 18
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=98.24 E-value=3.7e-07 Score=76.85 Aligned_cols=49 Identities=27% Similarity=0.340 Sum_probs=43.1
Q ss_pred cccccccc---ccCCCceeee-------cCCeeeEEEEEEEccCCeeEEeecccccCCCCeEEEcC
Q 003497 553 DLFQKYSS---LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRR 608 (815)
Q Consensus 553 dvftpkg~---lp~G~tv~~~-------iG~~c~gAkV~~v~~nGr~~lVpLs~~L~~GD~VeI~t 608 (815)
.+++|.|. +|.|.|+.++ +|.+|++|+| ||+ +|+|+++|++||+|+|+|
T Consensus 2 ~v~lpdG~~~~~~~g~T~~d~A~~I~~~l~~~~~~A~V-----ng~--~vdl~~~L~~~d~v~iiT 60 (60)
T PF02824_consen 2 RVYLPDGSIKELPEGSTVLDVAYSIHSSLAKRAVAAKV-----NGQ--LVDLDHPLEDGDVVEIIT 60 (60)
T ss_dssp EEEETTSCEEEEETTBBHHHHHHHHSHHHHHCEEEEEE-----TTE--EEETTSBB-SSEEEEEEE
T ss_pred EEECCCCCeeeCCCCCCHHHHHHHHCHHHHhheeEEEE-----cCE--ECCCCCCcCCCCEEEEEC
Confidence 36789995 7999997765 8999999999 999 999999999999999987
No 19
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.16 E-value=6e-06 Score=66.01 Aligned_cols=54 Identities=39% Similarity=0.499 Sum_probs=47.2
Q ss_pred EEcCCCCeEeCCCCCCHHHHHHHhCC--CC--ceEEECCEEeCCCccCCCCCEEEEeC
Q 003497 762 VCWPNGEIMRLRSGSTAADAAMKVGL--EG--KLVLVNGQLVLPNTELKDGDIVEVRV 815 (815)
Q Consensus 762 VftP~G~i~~Lp~GsT~~DfAy~ihv--~~--~~~~VNg~lvpl~~~L~~GD~VeI~t 815 (815)
+..|+|..+.+|.|+|+.|++..++. .. ..++|||++++++++|.+||.||++|
T Consensus 3 ~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~vn~~~~~l~~~l~~~~~i~~i~ 60 (60)
T cd01616 3 IFTPDGSAVELPKGATAMDFALKIHTDLGKGFIGALVNGQLVDLSYTLQDGDTVSIVT 60 (60)
T ss_pred EECCCCCEEEcCCCCCHHHHHHHHHHHHHhheEEEEECCEECCCCcCcCCCCEEEEeC
Confidence 56788999999999999999999873 22 33699999999999999999999986
No 20
>PRK01777 hypothetical protein; Validated
Probab=98.05 E-value=1.1e-05 Score=74.34 Aligned_cols=56 Identities=30% Similarity=0.386 Sum_probs=45.3
Q ss_pred ceEEEEcCCC---CeEeCCCCCCHHHHHHHhCCCC---------ceEEECCEEeCCCccCCCCCEEEEe
Q 003497 758 EVVIVCWPNG---EIMRLRSGSTAADAAMKVGLEG---------KLVLVNGQLVLPNTELKDGDIVEVR 814 (815)
Q Consensus 758 ~~v~VftP~G---~i~~Lp~GsT~~DfAy~ihv~~---------~~~~VNg~lvpl~~~L~~GD~VeI~ 814 (815)
+++|. +|+- .-+++|.|+|+.|+.-+.|+.. ..+-|||+.|.++++|++||+|||.
T Consensus 7 ~V~ya-~~~~~~~~~l~vp~GtTv~dal~~sgi~~~~pei~~~~~~vgI~Gk~v~~d~~L~dGDRVeIy 74 (95)
T PRK01777 7 EVVYA-LPERQYLQRLTLQEGATVEEAIRASGLLELRTDIDLAKNKVGIYSRPAKLTDVLRDGDRVEIY 74 (95)
T ss_pred EEEEE-CCCceEEEEEEcCCCCcHHHHHHHcCCCccCcccccccceEEEeCeECCCCCcCCCCCEEEEe
Confidence 34444 5543 3568999999999999999433 3578999999999999999999995
No 21
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=97.87 E-value=3.3e-05 Score=78.59 Aligned_cols=72 Identities=19% Similarity=0.302 Sum_probs=55.5
Q ss_pred hhcCCccccCc--chhhhHHHHHHHHHHcCCCCCCChhHHHHHhhhccc---cccccC--------------CHHHHHhH
Q 003497 114 AHHGQFRKTGD--PYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDV---VDDACE--------------SLGSIEEE 174 (815)
Q Consensus 114 aH~GQ~RksGe--PYI~HpL~VA~ILa~L~~~~g~~D~dtIaAALLHDv---VEDT~v--------------TlEeI~~~ 174 (815)
.+.|+...+|+ ||+.|++++|.+....+. |.+.|+||||||+ ++|+.. ..+.|+..
T Consensus 12 ~~~g~~~y~Ge~Vs~leH~LQ~A~lA~~~Ga-----d~elvvAALLHDIGhll~~~~~~~~~~g~~~~He~iga~~Lr~~ 86 (179)
T TIGR03276 12 DEHGARQYGGEAVSQLEHALQCAQLAEAAGA-----DDELIVAAFLHDIGHLLADEGATPMGRGGDDHHEELAADYLREL 86 (179)
T ss_pred HhcCccccCCCCCcHHHHHHHHHHHHHHcCC-----CHHHHHHHHHHhcchhhhcccccccccCCCccHHHHHHHHHHHH
Confidence 34455567787 689999999987766553 6899999999998 776532 24678888
Q ss_pred hcHHHHHHHHHhhhch
Q 003497 175 FGDEVAKLVAGVSRLS 190 (815)
Q Consensus 175 FG~eVA~LV~gVTKls 190 (815)
||++|+.+|..-..-+
T Consensus 87 F~~~V~~lV~~Hv~aK 102 (179)
T TIGR03276 87 FSPSVTEPIRLHVQAK 102 (179)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999876543
No 22
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.86 E-value=1.2e-05 Score=90.97 Aligned_cols=46 Identities=30% Similarity=0.414 Sum_probs=41.1
Q ss_pred eEeCCCCCCHHHHHHHhC--CCCce-----EEECCEEeCCCccCCCCCEEEEeC
Q 003497 769 IMRLRSGSTAADAAMKVG--LEGKL-----VLVNGQLVLPNTELKDGDIVEVRV 815 (815)
Q Consensus 769 i~~Lp~GsT~~DfAy~ih--v~~~~-----~~VNg~lvpl~~~L~~GD~VeI~t 815 (815)
.+.||.|||+.||||.|| ++..+ ++ ++|.|+++|+|+|||+|+|+|
T Consensus 342 ~~~l~~g~t~~d~A~~IH~d~~~~fi~A~~~~-~~~~~g~~~~l~dgDiv~i~~ 394 (396)
T PRK09602 342 AFLLPKGSTARDLAYKIHTDIGEGFLYAIDAR-TKRRIGEDYELKDGDVIKIVS 394 (396)
T ss_pred eEEECCCCCHHHHHHHHHHHHHhhceehhccc-CCcccCCCcEecCCCEEEEEe
Confidence 899999999999999999 55543 35 899999999999999999986
No 23
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=97.80 E-value=4.9e-05 Score=64.57 Aligned_cols=53 Identities=38% Similarity=0.549 Sum_probs=47.0
Q ss_pred EcCCCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeC----CCccCCCCCEEEEeC
Q 003497 763 CWPNGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVL----PNTELKDGDIVEVRV 815 (815)
Q Consensus 763 ftP~G~i~~Lp~GsT~~DfAy~ihv~~~~--~~VNg~lvp----l~~~L~~GD~VeI~t 815 (815)
++=+|+.+++|.|.|..|+.-+.++.... +-|||.++| .++.|++||+|||++
T Consensus 3 i~vNG~~~~~~~~~tl~~lL~~l~~~~~~vav~vNg~iv~r~~~~~~~l~~gD~vei~~ 61 (66)
T PRK05659 3 IQLNGEPRELPDGESVAALLAREGLAGRRVAVEVNGEIVPRSQHASTALREGDVVEIVH 61 (66)
T ss_pred EEECCeEEEcCCCCCHHHHHHhcCCCCCeEEEEECCeEeCHHHcCcccCCCCCEEEEEE
Confidence 44589999999999999999999966654 489999999 999999999999974
No 24
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=97.76 E-value=4e-05 Score=67.79 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=40.9
Q ss_pred CeEeCCCCCCHHHHHHHhC--C--CCceEEECC-EEeCCCccCCCCCEEEEeC
Q 003497 768 EIMRLRSGSTAADAAMKVG--L--EGKLVLVNG-QLVLPNTELKDGDIVEVRV 815 (815)
Q Consensus 768 ~i~~Lp~GsT~~DfAy~ih--v--~~~~~~VNg-~lvpl~~~L~~GD~VeI~t 815 (815)
+-+-||.|+|+.|||+.|| + +-+.|.|-| |.|-.+|+|++||+|+|+|
T Consensus 24 ~~~~l~~g~tv~d~a~~IH~d~~~~F~~A~v~~~~~vg~d~~l~d~DVv~i~~ 76 (76)
T cd04938 24 DCVLVKKGTTVGDVARKIHGDLEKGFIEAVGGRRRLEGKDVILGKNDILKFKT 76 (76)
T ss_pred eeEEEcCCCCHHHHHHHHhHHHHhccEEEEEccCEEECCCEEecCCCEEEEEC
Confidence 4567799999999999999 3 335567776 9999999999999999986
No 25
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=97.61 E-value=0.00014 Score=61.49 Aligned_cols=52 Identities=31% Similarity=0.397 Sum_probs=45.4
Q ss_pred cCCCCeEeCCCCCCHHHHHHHhCCCCce-EEECCEEeCC----CccCCCCCEEEEeC
Q 003497 764 WPNGEIMRLRSGSTAADAAMKVGLEGKL-VLVNGQLVLP----NTELKDGDIVEVRV 815 (815)
Q Consensus 764 tP~G~i~~Lp~GsT~~DfAy~ihv~~~~-~~VNg~lvpl----~~~L~~GD~VeI~t 815 (815)
+=||+.+++|.|+|..|+.-++++.... +-|||++||- ++.|++||.|||++
T Consensus 4 ~vNg~~~~~~~~~tl~~ll~~l~~~~~~~v~vN~~~v~~~~~~~~~L~~gD~vei~~ 60 (65)
T PRK06944 4 QLNQQTLSLPDGATVADALAAYGARPPFAVAVNGDFVARTQHAARALAAGDRLDLVQ 60 (65)
T ss_pred EECCEEEECCCCCcHHHHHHhhCCCCCeEEEECCEEcCchhcccccCCCCCEEEEEe
Confidence 3489999999999999999988865544 5999999997 78999999999985
No 26
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.
Probab=97.57 E-value=0.00019 Score=57.69 Aligned_cols=54 Identities=26% Similarity=0.382 Sum_probs=45.6
Q ss_pred EEcCCCCeEeCCCCCCHHHHHHHhCC--CCc--eEEECCEEeCCCccCCCCCEEEEeC
Q 003497 762 VCWPNGEIMRLRSGSTAADAAMKVGL--EGK--LVLVNGQLVLPNTELKDGDIVEVRV 815 (815)
Q Consensus 762 VftP~G~i~~Lp~GsT~~DfAy~ihv--~~~--~~~VNg~lvpl~~~L~~GD~VeI~t 815 (815)
+-.|+|....+|.|+|+.|+++.++. ... .++|||++++|+++|.+|+.||.+|
T Consensus 3 i~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~v~~~vng~~~dL~~~l~~~~~ie~i~ 60 (61)
T cd01667 3 ITLPDGSVKEFPKGTTPLDIAKSISPGLAKKAVAAKVNGELVDLSRPLEEDCELEIIT 60 (61)
T ss_pred EEcCCCCEEEeCCCCCHHHHHHHHHHHHHhheEEEEECCEEecCCcCcCCCCEEEEEe
Confidence 34477999999999999999999863 222 3599999999999999999999875
No 27
>PRK06437 hypothetical protein; Provisional
Probab=97.56 E-value=0.00016 Score=62.28 Aligned_cols=52 Identities=27% Similarity=0.366 Sum_probs=45.0
Q ss_pred cCCC---CeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeCCCccCCCCCEEEEeC
Q 003497 764 WPNG---EIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVLPNTELKDGDIVEVRV 815 (815)
Q Consensus 764 tP~G---~i~~Lp~GsT~~DfAy~ihv~~~~--~~VNg~lvpl~~~L~~GD~VeI~t 815 (815)
+=+| +-+++|.|.|..|+.-.+|+..+. +.|||++||.++.|++||.|||++
T Consensus 6 ~v~g~~~~~~~i~~~~tv~dLL~~Lgi~~~~vaV~vNg~iv~~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 6 RVKGHINKTIEIDHELTVNDIIKDLGLDEEEYVVIVNGSPVLEDHNVKKEDDVLILE 62 (67)
T ss_pred EecCCcceEEEcCCCCcHHHHHHHcCCCCccEEEEECCEECCCceEcCCCCEEEEEe
Confidence 3356 669999999999999999975543 589999999999999999999974
No 28
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=97.49 E-value=0.00019 Score=61.03 Aligned_cols=51 Identities=35% Similarity=0.539 Sum_probs=45.3
Q ss_pred CCCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeCCC----ccCCCCCEEEEeC
Q 003497 765 PNGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVLPN----TELKDGDIVEVRV 815 (815)
Q Consensus 765 P~G~i~~Lp~GsT~~DfAy~ihv~~~~--~~VNg~lvpl~----~~L~~GD~VeI~t 815 (815)
=+|+.+++|.|.|..|+.-.+++.... +.|||++||.+ +.|++||.|+|++
T Consensus 4 iNg~~~~~~~~~tv~~ll~~l~~~~~~i~V~vNg~~v~~~~~~~~~L~~gD~V~ii~ 60 (65)
T cd00565 4 VNGEPREVEEGATLAELLEELGLDPRGVAVALNGEIVPRSEWASTPLQDGDRIEIVT 60 (65)
T ss_pred ECCeEEEcCCCCCHHHHHHHcCCCCCcEEEEECCEEcCHHHcCceecCCCCEEEEEE
Confidence 379999999999999999999865543 58999999999 9999999999974
No 29
>PRK07440 hypothetical protein; Provisional
Probab=97.48 E-value=0.00023 Score=61.88 Aligned_cols=54 Identities=28% Similarity=0.437 Sum_probs=48.5
Q ss_pred EEcCCCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeC----CCccCCCCCEEEEeC
Q 003497 762 VCWPNGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVL----PNTELKDGDIVEVRV 815 (815)
Q Consensus 762 VftP~G~i~~Lp~GsT~~DfAy~ihv~~~~--~~VNg~lvp----l~~~L~~GD~VeI~t 815 (815)
-++=+|+.+++|.|.|..|+--.+++..+. +-+||.+|| .++.|++||.|||++
T Consensus 6 ~i~vNG~~~~~~~~~tl~~lL~~l~~~~~~vav~~N~~iv~r~~w~~~~L~~gD~IEIv~ 65 (70)
T PRK07440 6 TLQVNGETRTCSSGTSLPDLLQQLGFNPRLVAVEYNGEILHRQFWEQTQVQPGDRLEIVT 65 (70)
T ss_pred EEEECCEEEEcCCCCCHHHHHHHcCCCCCeEEEEECCEEeCHHHcCceecCCCCEEEEEE
Confidence 456689999999999999999999976654 599999999 999999999999985
No 30
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=97.43 E-value=0.00028 Score=61.31 Aligned_cols=50 Identities=40% Similarity=0.579 Sum_probs=46.0
Q ss_pred CCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeC----CCccCCCCCEEEEeC
Q 003497 766 NGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVL----PNTELKDGDIVEVRV 815 (815)
Q Consensus 766 ~G~i~~Lp~GsT~~DfAy~ihv~~~~--~~VNg~lvp----l~~~L~~GD~VeI~t 815 (815)
+|+-++++.+.|..|+--.+++.... +.|||.+|| .++.|++||+|||++
T Consensus 8 ng~~~e~~~~~tv~dLL~~l~~~~~~vav~vNg~iVpr~~~~~~~l~~gD~ievv~ 63 (68)
T COG2104 8 NGKEVEIAEGTTVADLLAQLGLNPEGVAVAVNGEIVPRSQWADTILKEGDRIEVVR 63 (68)
T ss_pred CCEEEEcCCCCcHHHHHHHhCCCCceEEEEECCEEccchhhhhccccCCCEEEEEE
Confidence 49999999999999999999977665 599999999 999999999999974
No 31
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=97.36 E-value=0.00045 Score=59.91 Aligned_cols=47 Identities=36% Similarity=0.501 Sum_probs=42.0
Q ss_pred eEeCCCCCCHHHHHHHhCCCCce--EEECCEEeCCCccCCCCCEEEEeC
Q 003497 769 IMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVLPNTELKDGDIVEVRV 815 (815)
Q Consensus 769 i~~Lp~GsT~~DfAy~ihv~~~~--~~VNg~lvpl~~~L~~GD~VeI~t 815 (815)
.+++|.|+|+.|+.-.+++...+ +.|||++|+.+|.|++||.|||++
T Consensus 17 ~~~~~~~~tv~~ll~~l~~~~~~v~v~vNg~iv~~~~~l~~gD~Veii~ 65 (70)
T PRK08364 17 EIEWRKGMKVADILRAVGFNTESAIAKVNGKVALEDDPVKDGDYVEVIP 65 (70)
T ss_pred EEEcCCCCcHHHHHHHcCCCCccEEEEECCEECCCCcCcCCCCEEEEEc
Confidence 67889999999999999966544 599999999999999999999974
No 32
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=97.35 E-value=0.00035 Score=60.25 Aligned_cols=52 Identities=25% Similarity=0.367 Sum_probs=46.1
Q ss_pred cCCCCeEeCCCC-CCHHHHHHHhCCCCce--EEECCEEeCCC----ccCCCCCEEEEeC
Q 003497 764 WPNGEIMRLRSG-STAADAAMKVGLEGKL--VLVNGQLVLPN----TELKDGDIVEVRV 815 (815)
Q Consensus 764 tP~G~i~~Lp~G-sT~~DfAy~ihv~~~~--~~VNg~lvpl~----~~L~~GD~VeI~t 815 (815)
+=+|+.+++|.| +|..|+--.+++..+. +-|||.+||-+ +.|++||.|||++
T Consensus 4 ~vNG~~~~~~~~~~tv~~lL~~l~~~~~~vav~vN~~iv~r~~w~~~~L~~gD~iEIv~ 62 (67)
T PRK07696 4 KINGNQIEVPESVKTVAELLTHLELDNKIVVVERNKDILQKDDHTDTSVFDGDQIEIVT 62 (67)
T ss_pred EECCEEEEcCCCcccHHHHHHHcCCCCCeEEEEECCEEeCHHHcCceecCCCCEEEEEE
Confidence 348999999999 7999999999976554 59999999999 9999999999985
No 33
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=97.26 E-value=0.00066 Score=57.66 Aligned_cols=50 Identities=38% Similarity=0.555 Sum_probs=43.7
Q ss_pred CCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeC----CCccCCCCCEEEEeC
Q 003497 766 NGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVL----PNTELKDGDIVEVRV 815 (815)
Q Consensus 766 ~G~i~~Lp~GsT~~DfAy~ihv~~~~--~~VNg~lvp----l~~~L~~GD~VeI~t 815 (815)
||+.+++|.|.|..|+.-.+++.... +-|||++|| .++.|++||.|||++
T Consensus 4 Ng~~~~~~~~~tv~~ll~~l~~~~~~v~v~vN~~iv~~~~~~~~~L~~gD~veii~ 59 (64)
T TIGR01683 4 NGEPVEVEDGLTLAALLESLGLDPRRVAVAVNGEIVPRSEWDDTILKEGDRIEIVT 59 (64)
T ss_pred CCeEEEcCCCCcHHHHHHHcCCCCCeEEEEECCEEcCHHHcCceecCCCCEEEEEE
Confidence 79999999999999999999866554 599999997 447999999999974
No 34
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=97.12 E-value=0.00026 Score=62.71 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=34.0
Q ss_pred CCCceeeecCCeeeEEEEEEEccCCeeEEeecccccCCCCeEEEcC
Q 003497 563 MGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRR 608 (815)
Q Consensus 563 ~G~tv~~~iG~~c~gAkV~~v~~nGr~~lVpLs~~L~~GD~VeI~t 608 (815)
+.+.||+.+|++|+.|++. . ||+ .|+++|.|++||+|+|+|
T Consensus 36 ~A~~IHtdi~~~f~~Ai~~--k-~~~--~vg~~~~L~dgDvV~Ii~ 76 (76)
T cd01669 36 LAYAIHTDIGDGFLHAIDA--R-TGR--RVGEDYELKHRDVIKIVS 76 (76)
T ss_pred HHHHHHHHHHhcceeeEEe--e-CCE--EeCCCcEecCCCEEEEeC
Confidence 3344677899999988752 2 788 899999999999999986
No 35
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=97.11 E-value=0.0012 Score=56.58 Aligned_cols=52 Identities=17% Similarity=0.188 Sum_probs=45.4
Q ss_pred cCCCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeC----CCccCCCCCEEEEeC
Q 003497 764 WPNGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVL----PNTELKDGDIVEVRV 815 (815)
Q Consensus 764 tP~G~i~~Lp~GsT~~DfAy~ihv~~~~--~~VNg~lvp----l~~~L~~GD~VeI~t 815 (815)
+=||+.+++|.|.|..|+--.++....+ +-|||++|| -+|.|++||.|||++
T Consensus 4 ~vNg~~~~~~~~~tl~~ll~~l~~~~~~vaVavN~~iv~r~~w~~~~L~~gD~Ieii~ 61 (66)
T PRK08053 4 LFNDQPMQCAAGQTVHELLEQLNQLQPGAALAINQQIIPREQWAQHIVQDGDQILLFQ 61 (66)
T ss_pred EECCeEEEcCCCCCHHHHHHHcCCCCCcEEEEECCEEeChHHcCccccCCCCEEEEEE
Confidence 4489999999999999999998866543 499999999 778999999999985
No 36
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=96.99 E-value=0.0006 Score=61.56 Aligned_cols=55 Identities=36% Similarity=0.489 Sum_probs=35.2
Q ss_pred eEEEEcCCCC---eEeCCCCCCHHHHHHHhC---------CCCceEEECCEEeCCCccCCCCCEEEEe
Q 003497 759 VVIVCWPNGE---IMRLRSGSTAADAAMKVG---------LEGKLVLVNGQLVLPNTELKDGDIVEVR 814 (815)
Q Consensus 759 ~v~VftP~G~---i~~Lp~GsT~~DfAy~ih---------v~~~~~~VNg~lvpl~~~L~~GD~VeI~ 814 (815)
++|. +|+.. -++||.|+|+.|+.-+-| +....+=|=||.|++++.|++||+|||-
T Consensus 5 V~yA-~p~~q~~~~l~vp~GtTv~~Ai~~Sgi~~~~p~idl~~~~vGIfGk~~~~d~~L~~GDRVEIY 71 (84)
T PF03658_consen 5 VAYA-LPERQVILTLEVPEGTTVAQAIEASGILEQFPEIDLEKNKVGIFGKLVKLDTVLRDGDRVEIY 71 (84)
T ss_dssp EEEE-ETTCEEEEEEEEETT-BHHHHHHHHTHHHH-TT--TTTSEEEEEE-S--TT-B--TT-EEEEE
T ss_pred EEEE-CCCeEEEEEEECCCcCcHHHHHHHcCchhhCcccCcccceeeeeeeEcCCCCcCCCCCEEEEe
Confidence 4444 56544 368999999999988876 2334467889999999999999999994
No 37
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=96.98 E-value=0.00032 Score=62.01 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=37.3
Q ss_pred ccCCCcee-------eecCCeeeEEEEE--EEccCCeeEEeecccccCCCCeEEEcC
Q 003497 561 LKMGHPVI-------RVEGSNLLAAVII--RVEKGGRELLVAVSFGLAASEVVADRR 608 (815)
Q Consensus 561 lp~G~tv~-------~~iG~~c~gAkV~--~v~~nGr~~lVpLs~~L~~GD~VeI~t 608 (815)
||.|+||. +.++.+|..|+|- ++..+|+ .|+++++|++||+|||.+
T Consensus 21 L~~GaTV~D~a~~iH~di~~~f~~A~v~g~s~~~~gq--~Vgl~~~L~d~DvVeI~~ 75 (75)
T cd01666 21 LRRGSTVEDVCNKIHKDLVKQFKYALVWGSSVKHSPQ--RVGLDHVLEDEDVVQIVK 75 (75)
T ss_pred ECCCCCHHHHHHHHHHHHHHhCCeeEEeccCCcCCCe--ECCCCCEecCCCEEEEeC
Confidence 68888864 4589999999973 2333788 899999999999999975
No 38
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=96.94 E-value=0.0016 Score=58.49 Aligned_cols=46 Identities=37% Similarity=0.478 Sum_probs=41.7
Q ss_pred eEeCCCCCCHHHHHHHhCCCCc---eEEECCEEeCCCccCCCCCEEEEe
Q 003497 769 IMRLRSGSTAADAAMKVGLEGK---LVLVNGQLVLPNTELKDGDIVEVR 814 (815)
Q Consensus 769 i~~Lp~GsT~~DfAy~ihv~~~---~~~VNg~lvpl~~~L~~GD~VeI~ 814 (815)
.+.++.|+|..|..=++||.+. .+.|||+.|+++|.|++||.|.|.
T Consensus 26 ~~~~~~~~tvkd~IEsLGVP~tEV~~i~vNG~~v~~~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 26 THPFDGGATVKDVIESLGVPHTEVGLILVNGRPVDFDYRLKDGDRVAVY 74 (81)
T ss_pred EEecCCCCcHHHHHHHcCCChHHeEEEEECCEECCCcccCCCCCEEEEE
Confidence 4688999999999999998884 469999999999999999999984
No 39
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=96.82 E-value=0.0025 Score=54.24 Aligned_cols=50 Identities=32% Similarity=0.437 Sum_probs=43.2
Q ss_pred CCCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeCC----CccCCCCCEEEEeC
Q 003497 765 PNGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVLP----NTELKDGDIVEVRV 815 (815)
Q Consensus 765 P~G~i~~Lp~GsT~~DfAy~ihv~~~~--~~VNg~lvpl----~~~L~~GD~VeI~t 815 (815)
=||+.+++ .+.|..|+--.+++..+. +-|||++||- +++|++||.|||++
T Consensus 5 ~Ng~~~~~-~~~tl~~Ll~~l~~~~~~vavavN~~iv~~~~~~~~~L~dgD~Ieiv~ 60 (65)
T PRK06488 5 VNGETLQT-EATTLALLLAELDYEGNWLATAVNGELVHKEARAQFVLHEGDRIEILS 60 (65)
T ss_pred ECCeEEEc-CcCcHHHHHHHcCCCCCeEEEEECCEEcCHHHcCccccCCCCEEEEEE
Confidence 37899999 468999999888876654 5999999998 99999999999974
No 40
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=96.29 E-value=0.0071 Score=51.72 Aligned_cols=53 Identities=26% Similarity=0.264 Sum_probs=44.9
Q ss_pred EcCCCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeCC---CccCCCCCEEEEeC
Q 003497 763 CWPNGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVLP---NTELKDGDIVEVRV 815 (815)
Q Consensus 763 ftP~G~i~~Lp~GsT~~DfAy~ihv~~~~--~~VNg~lvpl---~~~L~~GD~VeI~t 815 (815)
+|=||+-+++|.|.|..|+.-.+++..+. +-+||.+||- ++.|++||.|||++
T Consensus 3 i~vNG~~~~~~~~~tl~~ll~~l~~~~~~vav~~N~~iv~r~~~~~~L~~gD~ieIv~ 60 (65)
T PRK05863 3 VVVNEEQVEVDEQTTVAALLDSLGFPEKGIAVAVDWSVLPRSDWATKLRDGARLEVVT 60 (65)
T ss_pred EEECCEEEEcCCCCcHHHHHHHcCCCCCcEEEEECCcCcChhHhhhhcCCCCEEEEEe
Confidence 34589999999999999999999976644 5999999884 45799999999985
No 41
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=96.19 E-value=0.012 Score=53.18 Aligned_cols=57 Identities=23% Similarity=0.244 Sum_probs=48.9
Q ss_pred eEEEEcCCCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeCC----CccCCCCCEEEEeC
Q 003497 759 VVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVLP----NTELKDGDIVEVRV 815 (815)
Q Consensus 759 ~v~VftP~G~i~~Lp~GsT~~DfAy~ihv~~~~--~~VNg~lvpl----~~~L~~GD~VeI~t 815 (815)
...-++=||+.++++.|.|..|+--.+++..+. +-|||.+||- ++.|++||.|||++
T Consensus 17 ~~m~I~VNG~~~~~~~~~tl~~LL~~l~~~~~~vAVevNg~iVpr~~w~~t~L~egD~IEIv~ 79 (84)
T PRK06083 17 VLITISINDQSIQVDISSSLAQIIAQLSLPELGCVFAINNQVVPRSEWQSTVLSSGDAISLFQ 79 (84)
T ss_pred ceEEEEECCeEEEcCCCCcHHHHHHHcCCCCceEEEEECCEEeCHHHcCcccCCCCCEEEEEE
Confidence 344566799999999999999999999987764 4999999995 68999999999985
No 42
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=96.10 E-value=0.011 Score=51.47 Aligned_cols=48 Identities=31% Similarity=0.409 Sum_probs=39.6
Q ss_pred CeEeCCCCCCHHHHHHHhCC--C-------Cc-eEEECCEEeCCCccCCCCCEEEEeC
Q 003497 768 EIMRLRSGSTAADAAMKVGL--E-------GK-LVLVNGQLVLPNTELKDGDIVEVRV 815 (815)
Q Consensus 768 ~i~~Lp~GsT~~DfAy~ihv--~-------~~-~~~VNg~lvpl~~~L~~GD~VeI~t 815 (815)
..+++|.|+|..|+.-.+.. + .. .+.|||++|+.+++|++||.|+|+.
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~~~~l~~gD~v~i~p 75 (80)
T cd00754 18 EELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRLDTPLKDGDEVAIIP 75 (80)
T ss_pred EEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCCCcccCCCCEEEEeC
Confidence 45688999999999888752 1 12 3699999999999999999999973
No 43
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=95.98 E-value=0.015 Score=51.44 Aligned_cols=49 Identities=24% Similarity=0.334 Sum_probs=40.6
Q ss_pred CCCeEeCCCCCCHHHHHHHhCC---------CCceEEECCEEeCCCccCCCCCEEEEe
Q 003497 766 NGEIMRLRSGSTAADAAMKVGL---------EGKLVLVNGQLVLPNTELKDGDIVEVR 814 (815)
Q Consensus 766 ~G~i~~Lp~GsT~~DfAy~ihv---------~~~~~~VNg~lvpl~~~L~~GD~VeI~ 814 (815)
+++.+++|.|+|..|..-.+.. ....+-|||+.++.+++|++||.|+|+
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~~~~l~dgDeVai~ 76 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTESAALKDGDELAII 76 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCCCcCcCCCCEEEEe
Confidence 3477899999999998887741 112368999999999999999999997
No 44
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=95.31 E-value=0.025 Score=48.82 Aligned_cols=47 Identities=36% Similarity=0.473 Sum_probs=41.0
Q ss_pred CeEeCCCCCCHHHHHHHhC--C------CCceEEECCEEeCC---CccCCCCCEEEEe
Q 003497 768 EIMRLRSGSTAADAAMKVG--L------EGKLVLVNGQLVLP---NTELKDGDIVEVR 814 (815)
Q Consensus 768 ~i~~Lp~GsT~~DfAy~ih--v------~~~~~~VNg~lvpl---~~~L~~GD~VeI~ 814 (815)
..+.+|.|+|..|+--++. . ..-.+.|||++++. +++|++||.|.|+
T Consensus 14 ~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~~~~~~~l~~gD~V~i~ 71 (77)
T PF02597_consen 14 EEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPDDGLDTPLKDGDEVAIL 71 (77)
T ss_dssp EEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGGGTTTSBEETTEEEEEE
T ss_pred eEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCCccCCcCcCCCCEEEEE
Confidence 5678899999999999997 3 33347999999999 9999999999997
No 45
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=95.24 E-value=0.016 Score=47.44 Aligned_cols=48 Identities=25% Similarity=0.391 Sum_probs=38.7
Q ss_pred ccccccc---ccCCCceeeec-------CCeeeEEEEEEEccCCeeEEeecccccCCCCeEEEcC
Q 003497 554 LFQKYSS---LKMGHPVIRVE-------GSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRR 608 (815)
Q Consensus 554 vftpkg~---lp~G~tv~~~i-------G~~c~gAkV~~v~~nGr~~lVpLs~~L~~GD~VeI~t 608 (815)
+|.|.|. +|.|.|+.+++ ...++++++ ||+ ++++++.|+.||.|+++|
T Consensus 3 ~~~~~g~~~~~~~~~t~~~~~~~~~~~~~~~~va~~v-----ng~--~vdl~~~l~~~~~ve~v~ 60 (60)
T cd01668 3 VFTPKGEIIELPAGATVLDFAYAIHTEIGNRCVGAKV-----NGK--LVPLSTVLKDGDIVEIIT 60 (60)
T ss_pred EECCCCCEEEcCCCCCHHHHHHHHChHhhhheEEEEE-----CCE--ECCCCCCCCCCCEEEEEC
Confidence 6888885 68888876642 245677777 899 999999999999999975
No 46
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.00 E-value=0.04 Score=50.80 Aligned_cols=45 Identities=36% Similarity=0.441 Sum_probs=37.4
Q ss_pred EeCCCCCCHHHHHHHhCCC-------Cc-e-EEECCEEeCCCccCCCCCEEEEe
Q 003497 770 MRLRSGSTAADAAMKVGLE-------GK-L-VLVNGQLVLPNTELKDGDIVEVR 814 (815)
Q Consensus 770 ~~Lp~GsT~~DfAy~ihv~-------~~-~-~~VNg~lvpl~~~L~~GD~VeI~ 814 (815)
+.|+.|+|+.|++..=|+- -+ + +=|=|+.|-++.+|++||+|||.
T Consensus 21 v~v~egatV~dAi~~Sgll~~~~~idl~~n~~GI~~k~~kl~~~l~dgDRVEIy 74 (99)
T COG2914 21 VQLQEGATVEDAILASGLLELFPDIDLHENKVGIYSKPVKLDDELHDGDRVEIY 74 (99)
T ss_pred EEeccCcCHHHHHHhcchhhccccCCccccceeEEccccCccccccCCCEEEEe
Confidence 7899999999999987722 11 1 46779999999999999999994
No 47
>PTZ00258 GTP-binding protein; Provisional
Probab=94.96 E-value=0.037 Score=63.02 Aligned_cols=56 Identities=20% Similarity=0.227 Sum_probs=43.2
Q ss_pred eEEEEcC---CCCeEeCCCCCCHHHHHHHhC--CCC--ceEEE-----------------CC--EEeCCCccCCCCCEEE
Q 003497 759 VVIVCWP---NGEIMRLRSGSTAADAAMKVG--LEG--KLVLV-----------------NG--QLVLPNTELKDGDIVE 812 (815)
Q Consensus 759 ~v~VftP---~G~i~~Lp~GsT~~DfAy~ih--v~~--~~~~V-----------------Ng--~lvpl~~~L~~GD~Ve 812 (815)
-+-+||- .-+-..+|.|||+.|+|..|| ++- ..|.| -| |++--+|.|+|||||+
T Consensus 304 li~ffT~g~~e~raw~i~~Gsta~~aAg~IHsD~~kgFi~Aev~~~~d~~~~g~~~~ak~~g~~r~eGkdYiv~DGDIi~ 383 (390)
T PTZ00258 304 LIHFFTAGPDEVRCWTIQKGTKAPQAAGVIHSDFEKGFICAEVMKYEDFLELGSEAAVKAEGKYRQEGKDYVVQDGDIIF 383 (390)
T ss_pred CEEEEcCCCCceeEEEeCCCCcHHHHHhhhhhHHhhCcEEEEECcHHHHHHcCCHHHHHhcCceeeeCCceEecCCCEEE
Confidence 3446662 236788999999999999999 332 23455 26 8999999999999999
Q ss_pred Ee
Q 003497 813 VR 814 (815)
Q Consensus 813 I~ 814 (815)
++
T Consensus 384 f~ 385 (390)
T PTZ00258 384 FK 385 (390)
T ss_pred EE
Confidence 86
No 48
>PRK14707 hypothetical protein; Provisional
Probab=94.80 E-value=0.071 Score=69.67 Aligned_cols=109 Identities=21% Similarity=0.326 Sum_probs=85.2
Q ss_pred EEeecChhHHHHHHHh----cCCCC----CccccceeEEEEEcCCCCCCCCccHHHHHHHHHHHHhc-CCcccccccccc
Q 003497 400 SSRLKSLYSIFSKMRR----KDVGI----HKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL-WIPIDGEFDDYI 470 (815)
Q Consensus 400 ~gR~K~~ySI~~Km~r----k~~~~----~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~ilgiIh~~-~~pip~r~kDYI 470 (815)
..|+|+..|+.+|+.. ++.++ ..|+|.+-.-||+++. .|+..+..|++.+... |+.+ +++++-
T Consensus 2308 e~RLKS~~SLkrKL~~~~~~~~~sleeAaa~VnDALRYTVVLpp~------~Fva~~r~Il~aL~~qGy~~v--kvkN~F 2379 (2710)
T PRK14707 2308 QHQLKSYSSLQEKLKQRVALKKQSLEEAAASVNDALRYSVVLEPQ------GFTAGLRAVLAALDDQGHARV--KLTNQF 2379 (2710)
T ss_pred HHHhcCHHHHHHHHHHHHhccCCCHHHHHHHhhhheeEEEEcCch------hHHHHHHHHHHHHHHcCCeEE--EEeecc
Confidence 4699999999999973 46665 5699988777777753 4899999999988754 6544 677766
Q ss_pred cCCCCCCCceeEEEEEcCCCcEEEEEEeechhhhHHHhhhhhhhhccccC
Q 003497 471 VNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 520 (815)
Q Consensus 471 a~PK~nGYqSLHt~V~~p~g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~~~ 520 (815)
.. +.++|..+++++..|+|..+|||-=|..=-..-+. -|=.||+..
T Consensus 2380 ~~-~~~~YkGINvtL~~pdG~~FEIQFHT~qSF~LK~r---~HdLYKQ~q 2425 (2710)
T PRK14707 2380 TE-YSPSFKAINLTLRSPEGALWEIQFHTPETFALKER---FHDLYKRTH 2425 (2710)
T ss_pred cC-CCCCccceEEEEEcCCCcEEEEEeccHHHHHHHHH---HHHHHHHHH
Confidence 33 45899999999999999999999999876555552 478999743
No 49
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=94.77 E-value=0.02 Score=63.39 Aligned_cols=45 Identities=42% Similarity=0.484 Sum_probs=38.7
Q ss_pred EeCCCCCCHHHHHHHhC-----------CCCceEEECCEEeCCCccCCCCCEEEEe
Q 003497 770 MRLRSGSTAADAAMKVG-----------LEGKLVLVNGQLVLPNTELKDGDIVEVR 814 (815)
Q Consensus 770 ~~Lp~GsT~~DfAy~ih-----------v~~~~~~VNg~lvpl~~~L~~GD~VeI~ 814 (815)
+-|+.|||+.|++.+|| |=++-+|-+||.|=++|.|.|||+|+|.
T Consensus 308 lIlr~GsTV~Dvc~~IH~~l~~~FryA~VWGkSvk~~~QrVG~dHvLeD~DIV~I~ 363 (365)
T COG1163 308 LILRRGSTVGDVCRKIHRDLVENFRYARVWGKSVKHPGQRVGLDHVLEDEDIVEIH 363 (365)
T ss_pred eEEeCCCcHHHHHHHHHHHHHHhcceEEEeccCCCCCccccCcCcCccCCCeEEEe
Confidence 45789999999999999 2224468899999999999999999996
No 50
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=94.15 E-value=0.12 Score=45.63 Aligned_cols=47 Identities=28% Similarity=0.425 Sum_probs=38.4
Q ss_pred CeEeCCCC-CCHHHHHHHhC-----C---CCc-eEEECCEEeCCCccCCCCCEEEEe
Q 003497 768 EIMRLRSG-STAADAAMKVG-----L---EGK-LVLVNGQLVLPNTELKDGDIVEVR 814 (815)
Q Consensus 768 ~i~~Lp~G-sT~~DfAy~ih-----v---~~~-~~~VNg~lvpl~~~L~~GD~VeI~ 814 (815)
+.+++|.+ +|..|..-.+. + ... .+.|||++++.+++|++||.|.|+
T Consensus 18 ~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~~~~l~dgDevai~ 74 (80)
T TIGR01682 18 ETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTDDALLNEGDEVAFI 74 (80)
T ss_pred EEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCCCcCcCCCCEEEEe
Confidence 46788876 99999888884 1 122 369999999999999999999986
No 51
>PLN02908 threonyl-tRNA synthetase
Probab=93.77 E-value=0.32 Score=59.23 Aligned_cols=88 Identities=17% Similarity=0.231 Sum_probs=61.3
Q ss_pred CccccchhhHHHHHHHHHHHHHhhhhhhHHhhhccCCCCCCCCCCCCCCceEEEEcCCCCeEeCCC-CCCHHHHHHHhCC
Q 003497 709 TSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRS-GSTAADAAMKVGL 787 (815)
Q Consensus 709 t~~~~~~~~k~~wlr~~lewq~e~~~~~~~~~~~~~~~f~~~~k~~l~~~~v~VftP~G~i~~Lp~-GsT~~DfAy~ihv 787 (815)
.+....+.+++..+.++-+=|.+. + .. .-.+.+-|--|+|.+...|. |+||.|.|..+.-
T Consensus 20 ~~~~~~~~~r~~~f~~~~~~~~~~-----~----------~~----~~~~~i~i~~~dg~~~~~~~~~tt~~~ia~~i~~ 80 (686)
T PLN02908 20 EYLSAVIKKRIELFEKIQARQLAR-----L----------ES----AGGDPIKVTLPDGAVKDGKKWVTTPMDIAKEISK 80 (686)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHH-----h----------hh----ccCCceEEEeCCCceEeecCCCCCHHHHHHHhCc
Confidence 334455677777777773322211 1 11 12234556669999999994 5999999999973
Q ss_pred --CCc--eEEECCEEeCCCccCCCCCEEEEeC
Q 003497 788 --EGK--LVLVNGQLVLPNTELKDGDIVEVRV 815 (815)
Q Consensus 788 --~~~--~~~VNg~lvpl~~~L~~GD~VeI~t 815 (815)
... .++|||+++.|+++|.....||++|
T Consensus 81 ~~~~~~v~a~Vng~l~dL~~~l~~d~~le~l~ 112 (686)
T PLN02908 81 GLANSALIAQVDGVLWDMTRPLEGDCKLKLFK 112 (686)
T ss_pred cchhhcEEEEECCEEeecCccccCCCeeEEec
Confidence 333 3699999999999999888899875
No 52
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=92.47 E-value=0.25 Score=59.56 Aligned_cols=56 Identities=21% Similarity=0.277 Sum_probs=47.8
Q ss_pred EEEEcCCCCeEeCCCCCCHHHHHHHhCCC--Cc--eEEECCEEeCCCccCCCCCEEEEeC
Q 003497 760 VIVCWPNGEIMRLRSGSTAADAAMKVGLE--GK--LVLVNGQLVLPNTELKDGDIVEVRV 815 (815)
Q Consensus 760 v~VftP~G~i~~Lp~GsT~~DfAy~ihv~--~~--~~~VNg~lvpl~~~L~~GD~VeI~t 815 (815)
+.|.-|+|.+...|.|.|+.|.|..+.-+ .. .++|||++++|++++..+..||++|
T Consensus 6 i~i~~~~~~~~~~~~g~t~~~ia~~~~~~~~~~iv~a~vn~~l~dL~~~i~~d~~i~fv~ 65 (639)
T PRK12444 6 IEIKFPDGSVKEFVKGITLEEIAGSISSSLKKKAVAGKVNDKLYDLRRNLEEDAEVEIIT 65 (639)
T ss_pred eEEEeCCCCEEEecCCCCHHHHHHHhhhhcchheEEEEECCEEEEcCcccCCCCeEEEec
Confidence 56777889999999999999999988632 22 3699999999999999999999875
No 53
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=91.66 E-value=0.18 Score=44.77 Aligned_cols=43 Identities=19% Similarity=0.253 Sum_probs=29.0
Q ss_pred CcchhhhHHHHHHHHHHcCCCCCC-ChhHHHHHhhhcccccccc
Q 003497 123 GDPYLTHCIHTGRILAMLIPSSGK-RAVDTVVAGILHDVVDDAC 165 (815)
Q Consensus 123 GePYI~HpL~VA~ILa~L~~~~g~-~D~dtIaAALLHDvVEDT~ 165 (815)
+++.+.|.+.|+.+...+....+. .......||||||+-....
T Consensus 2 ~~~~~~H~~~v~~~~~~l~~~~~~~~~~~~~~a~LlHDig~~~~ 45 (124)
T smart00471 2 DYHVFEHSLRVAQLAAALAEELGLLDIELLLLAALLHDIGKPGT 45 (124)
T ss_pred CchHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHcccCccC
Confidence 567889999999877544311010 1346789999999977543
No 54
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=91.62 E-value=0.16 Score=40.16 Aligned_cols=41 Identities=24% Similarity=0.455 Sum_probs=32.7
Q ss_pred ccCCCceeee-------cCCeeeEEEEEEEccCCeeEEeecccccCCCCeEEEcC
Q 003497 561 LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRR 608 (815)
Q Consensus 561 lp~G~tv~~~-------iG~~c~gAkV~~v~~nGr~~lVpLs~~L~~GD~VeI~t 608 (815)
+|.|.|+.++ .....++++| ||+ +++|++.|..||.|+++|
T Consensus 13 ~~~g~t~~~~~~~~~~~~~~~~~~~~v-----n~~--~~~l~~~l~~~~~i~~i~ 60 (60)
T cd01616 13 LPKGATAMDFALKIHTDLGKGFIGALV-----NGQ--LVDLSYTLQDGDTVSIVT 60 (60)
T ss_pred cCCCCCHHHHHHHHHHHHHhheEEEEE-----CCE--ECCCCcCcCCCCEEEEeC
Confidence 5777776654 2445678888 899 999999999999999875
No 55
>PRK09602 translation-associated GTPase; Reviewed
Probab=90.17 E-value=0.1 Score=59.49 Aligned_cols=45 Identities=18% Similarity=0.227 Sum_probs=36.5
Q ss_pred ccCCCc-------eeeecCCeeeEEEEEEEccCCeeEEeecccccCCCCeEEEcCCC
Q 003497 561 LKMGHP-------VIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPS 610 (815)
Q Consensus 561 lp~G~t-------v~~~iG~~c~gAkV~~v~~nGr~~lVpLs~~L~~GD~VeI~ts~ 610 (815)
||.|+| ||+.+|.+|+.|... . +++ .|+++|.|+.||+|+|+|++
T Consensus 345 l~~g~t~~d~A~~IH~d~~~~fi~A~~~--~-~~~--~~g~~~~l~dgDiv~i~~~~ 396 (396)
T PRK09602 345 LPKGSTARDLAYKIHTDIGEGFLYAIDA--R-TKR--RIGEDYELKDGDVIKIVSTA 396 (396)
T ss_pred ECCCCCHHHHHHHHHHHHHhhceehhcc--c-CCc--ccCCCcEecCCCEEEEEeCC
Confidence 566655 688899999888752 2 577 89999999999999999864
No 56
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=90.16 E-value=0.28 Score=44.28 Aligned_cols=38 Identities=18% Similarity=0.277 Sum_probs=24.8
Q ss_pred hhhHHHHHHHHHHcCCCCC-CCh-hHHHHHhhhccccccc
Q 003497 127 LTHCIHTGRILAMLIPSSG-KRA-VDTVVAGILHDVVDDA 164 (815)
Q Consensus 127 I~HpL~VA~ILa~L~~~~g-~~D-~dtIaAALLHDvVEDT 164 (815)
+.|.+.|+.+...+....+ ..+ .-..+||||||+-.-.
T Consensus 2 ~~Hs~~V~~~a~~l~~~~~~~~~~~~l~~aaLlHDiGk~~ 41 (122)
T PF01966_consen 2 FEHSLRVAELAERLADRLGLEEDRELLRIAALLHDIGKIP 41 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTHHS
T ss_pred hhHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCCCC
Confidence 6799999988766542111 001 2266999999997654
No 57
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=89.96 E-value=0.64 Score=41.54 Aligned_cols=46 Identities=35% Similarity=0.461 Sum_probs=36.1
Q ss_pred CeEeCCCCCCHHHHHHHhC--CC---------------CceEEECCEEeCCCc--cCCCCCEEEEe
Q 003497 768 EIMRLRSGSTAADAAMKVG--LE---------------GKLVLVNGQLVLPNT--ELKDGDIVEVR 814 (815)
Q Consensus 768 ~i~~Lp~GsT~~DfAy~ih--v~---------------~~~~~VNg~lvpl~~--~L~~GD~VeI~ 814 (815)
..+++| |+|..|+.-.+. .+ +..+.|||+.+..+. +|++||.|.|+
T Consensus 18 ~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~~~l~dgdev~i~ 82 (88)
T TIGR01687 18 EEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLGTELKDGDVVAIF 82 (88)
T ss_pred EEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCCCCCCCCCEEEEe
Confidence 345777 999999888873 11 133699999998887 99999999986
No 58
>PRK09169 hypothetical protein; Validated
Probab=89.13 E-value=2.4 Score=56.97 Aligned_cols=109 Identities=24% Similarity=0.326 Sum_probs=80.8
Q ss_pred EEEeecChhHHHHHHH----hcCCCC----CccccceeEEEEEcCCCCCCCCccHHHHHHHHHHHHhc-CCccccccccc
Q 003497 399 LSSRLKSLYSIFSKMR----RKDVGI----HKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL-WIPIDGEFDDY 469 (815)
Q Consensus 399 I~gR~K~~ySI~~Km~----rk~~~~----~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~ilgiIh~~-~~pip~r~kDY 469 (815)
...|+|+..|+.+|+. +++.++ ..|.|.+-.-|+.++ ..|+..+..+++.+... |..+ +++++
T Consensus 1916 le~RlKS~~SL~rKL~~~~~~~~~s~e~Aaa~VnDALRYtvvLp~------~~Fva~~r~iv~~L~~~G~~~V--kv~N~ 1987 (2316)
T PRK09169 1916 LAHRLKSEGSLFEKLRGLMAKKHLTPEEAAALVNDALRYSVVLPP------QTFVAGYRRILGALDEQGHTRT--RVTNH 1987 (2316)
T ss_pred hHhhhCCHHHHHHHHHHHHhccCCCHHHHHHhccceeeEEEecCC------ccHHHHHHHHHHHHHhCCCeEE--EEEee
Confidence 3569999999999998 456665 468996655555554 25889999999988754 6544 45554
Q ss_pred ccCCCCCCCceeEEEE-EcCCCcEEEEEEeechhhhHHHhhhhhhhhcccc
Q 003497 470 IVNPKPSGYQSLHTAV-QGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET 519 (815)
Q Consensus 470 Ia~PK~nGYqSLHt~V-~~p~g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~~ 519 (815)
-..+ .++|..+|+++ ..++|..+|||-=|..=-..-+. -|-.||+.
T Consensus 1988 F~~~-~~~YkGVNv~l~~s~~g~~fEIQFHT~qSF~lK~r---~H~lYkq~ 2034 (2316)
T PRK09169 1988 FKKR-GPAFKGINVTLDATGEGVRLEIQFHTPQTFDLKER---FHDLYKQA 2034 (2316)
T ss_pred eccC-CCCccceEEeeecCCCCceEEEEecCHHHHHHHHH---hHHHHHHH
Confidence 3332 49999999999 67889999999999765554443 37899964
No 59
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=89.10 E-value=1.6 Score=49.12 Aligned_cols=78 Identities=12% Similarity=0.159 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhcCCccccCcchhhhHHHHHHHHHHcCCCCCCChhHHHHHhhhccccccccC-------CHHHHHh-Hh
Q 003497 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACE-------SLGSIEE-EF 175 (815)
Q Consensus 104 l~kA~~fA~~aH~GQ~RksGePYI~HpL~VA~ILa~L~~~~g~~D~dtIaAALLHDvVEDT~v-------TlEeI~~-~F 175 (815)
.++++++-.+.+. .+..+.|.+.|+.....+....+......++||||||+-..... ..+-+++ .|
T Consensus 172 ~ee~l~Ll~k~~~------~e~l~~Hs~rVa~lA~~LA~~~~~D~~ll~aAALLHDIGK~k~~~~~H~~~Ga~iL~e~G~ 245 (339)
T PRK12703 172 EDQCLDLLKKYGA------SDLLIRHVKTVYKLAMRIADCINADRRLVAAGALLHDIGRTKTNGIDHAVAGAEILRKENI 245 (339)
T ss_pred HHHHHHHHHHcCC------ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHCCC
Confidence 3556666444432 23357899999876433322112223456688999999653321 1233333 35
Q ss_pred cHHHHHHHHHhh
Q 003497 176 GDEVAKLVAGVS 187 (815)
Q Consensus 176 G~eVA~LV~gVT 187 (815)
.++++.+|+.-.
T Consensus 246 ~e~i~~iIe~H~ 257 (339)
T PRK12703 246 DDRVVSIVERHI 257 (339)
T ss_pred CHHHHHHHHHHh
Confidence 678888886544
No 60
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=88.96 E-value=1.2 Score=39.48 Aligned_cols=41 Identities=27% Similarity=0.173 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHhC----------C-CCceEEECCEEeCCCccCCCCCEEEEe
Q 003497 774 SGSTAADAAMKVG----------L-EGKLVLVNGQLVLPNTELKDGDIVEVR 814 (815)
Q Consensus 774 ~GsT~~DfAy~ih----------v-~~~~~~VNg~lvpl~~~L~~GD~VeI~ 814 (815)
.|+|+.|+--.+- . +.-.+-||++++..+|+|++||.|.|+
T Consensus 24 ~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~~~~l~dgDeVai~ 75 (81)
T PRK11130 24 DFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFF 75 (81)
T ss_pred CCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCCCCCCCCCCEEEEe
Confidence 4789988766652 1 122369999999999999999999886
No 61
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=88.92 E-value=0.37 Score=40.24 Aligned_cols=27 Identities=41% Similarity=0.641 Sum_probs=23.7
Q ss_pred CCCceEEECCEEe-CCCccCCCCCEEEE
Q 003497 787 LEGKLVLVNGQLV-LPNTELKDGDIVEV 813 (815)
Q Consensus 787 v~~~~~~VNg~lv-pl~~~L~~GD~VeI 813 (815)
+....++|||+.+ ..++.|+.||.|+|
T Consensus 31 i~~G~V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 31 LQENEVLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred HHcCCEEECCEEccCCCCCCCCCCEEEe
Confidence 4556689999999 88999999999987
No 62
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=87.34 E-value=0.31 Score=38.71 Aligned_cols=25 Identities=36% Similarity=0.602 Sum_probs=22.0
Q ss_pred CCCceEEECCEEeC-CCccCCCCCEE
Q 003497 787 LEGKLVLVNGQLVL-PNTELKDGDIV 811 (815)
Q Consensus 787 v~~~~~~VNg~lvp-l~~~L~~GD~V 811 (815)
+....++|||+.|. ++++++.||+|
T Consensus 23 I~~g~V~VNg~~v~~~~~~v~~~d~I 48 (48)
T PF01479_consen 23 IKQGRVKVNGKVVKDPSYIVKPGDVI 48 (48)
T ss_dssp HHTTTEEETTEEESSTTSBESTTEEE
T ss_pred cCCCEEEECCEEEcCCCCCCCCcCCC
Confidence 44466899999999 99999999987
No 63
>PRK14707 hypothetical protein; Provisional
Probab=87.11 E-value=1.3 Score=58.93 Aligned_cols=103 Identities=24% Similarity=0.326 Sum_probs=78.1
Q ss_pred cChhHHHHHHHhc---CCCC----CccccceeEEEEEcCCCCCCCCccHHHHHHHHHHHHhc-CCcccccccccccCCCC
Q 003497 404 KSLYSIFSKMRRK---DVGI----HKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL-WIPIDGEFDDYIVNPKP 475 (815)
Q Consensus 404 K~~ySI~~Km~rk---~~~~----~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~ilgiIh~~-~~pip~r~kDYIa~PK~ 475 (815)
|+..||.+|+.+. |++. ..|.|.+-.=||.+. +.|+...+.+.+.+... |+.+ ++|++-..| .
T Consensus 2544 Ks~~Si~RKI~~~~~~~ls~eqAaarVrDalRYtviLp~------e~Fv~~v~~~~~~L~~~G~~~~--rvKNtw~~~-d 2614 (2710)
T PRK14707 2544 KSLASIKDKIRRHLRAGMTAEQATQSVGDALRYALELPS------EGFVAKVQAAQDALRRQGMTCV--NLQNYFTSG-D 2614 (2710)
T ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHhhhheeEEEEcCc------chHHHHHHHHHHHHHhcCCeEE--EeeccccCC-C
Confidence 9999999999863 4443 468997655566553 35888999999988754 6655 788888554 4
Q ss_pred CCCceeEEEEEcCCCcEEEEEEeechhhhHHHhhhhhhhhccc
Q 003497 476 SGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 518 (815)
Q Consensus 476 nGYqSLHt~V~~p~g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~ 518 (815)
+.|..+-+++..++|..+|||-=|..=- ++..+ .|-.|+.
T Consensus 2615 ~tY~GvN~~~r~~~g~~FEIQFHT~~Sf-~~K~~--tH~lYek 2654 (2710)
T PRK14707 2615 GTYRGINASFTDAEGYAFEVQFHTAESF-NAKAQ--THLSYKR 2654 (2710)
T ss_pred CcccceeeeEEcCCCCeEEEEeccHHHH-HHHHH--hHHHHHh
Confidence 7899999999999999999999997543 34334 4788975
No 64
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=86.59 E-value=0.55 Score=53.20 Aligned_cols=56 Identities=23% Similarity=0.335 Sum_probs=38.3
Q ss_pred eEEEEcCCC---CeEeCCCCCCHHHHHHHhC--CCCce--EEE-------------C----CE--EeCCCccCCCCCEEE
Q 003497 759 VVIVCWPNG---EIMRLRSGSTAADAAMKVG--LEGKL--VLV-------------N----GQ--LVLPNTELKDGDIVE 812 (815)
Q Consensus 759 ~v~VftP~G---~i~~Lp~GsT~~DfAy~ih--v~~~~--~~V-------------N----g~--lvpl~~~L~~GD~Ve 812 (815)
-+.+||-.. +...+|.||||.|+|..|| ++-.. |-| + |+ +.-=+|.++|||||.
T Consensus 280 li~fftvg~~evrawti~~GstA~~aAg~IHsD~~kgFI~AeVi~~~d~~~~g~~~~ak~~gk~rleGkdY~v~DGDIi~ 359 (364)
T PRK09601 280 LITYFTAGPKEVRAWTIKKGTTAPQAAGVIHTDFEKGFIRAEVISYDDLIEYGSEAGAKEAGKVRLEGKDYIVQDGDVMH 359 (364)
T ss_pred CEEEecCCCCeEEEEEeCCCCchHHHhhcchhhHhhccEEEEEecHHHHHHcCCHHHHHHccceeccCCceEecCCCEEE
Confidence 344555322 5678999999999999999 33221 221 1 22 334699999999999
Q ss_pred Ee
Q 003497 813 VR 814 (815)
Q Consensus 813 I~ 814 (815)
|+
T Consensus 360 f~ 361 (364)
T PRK09601 360 FR 361 (364)
T ss_pred EE
Confidence 86
No 65
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=85.09 E-value=1.7 Score=40.14 Aligned_cols=41 Identities=29% Similarity=0.250 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHhC----------C--CC-----ceEEECCEEe----CCCccCCCCCEEEEe
Q 003497 774 SGSTAADAAMKVG----------L--EG-----KLVLVNGQLV----LPNTELKDGDIVEVR 814 (815)
Q Consensus 774 ~GsT~~DfAy~ih----------v--~~-----~~~~VNg~lv----pl~~~L~~GD~VeI~ 814 (815)
.|+|..|..-.+- . ++ -.+.|||+-+ -++|+|++||.|.|+
T Consensus 27 ~~~tV~dll~~L~~~~~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~ 88 (94)
T cd01764 27 KPVTVGDLLDYVASNLLEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFI 88 (94)
T ss_pred CCCcHHHHHHHHHHhCchhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEE
Confidence 6899999877761 1 11 2479999997 478999999999986
No 66
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=84.94 E-value=0.82 Score=38.74 Aligned_cols=42 Identities=29% Similarity=0.388 Sum_probs=30.1
Q ss_pred ccCCCceeee---cC--CeeeEEEEEEEccCCeeEEee----cccccCCCCeEEEcCC
Q 003497 561 LKMGHPVIRV---EG--SNLLAAVIIRVEKGGRELLVA----VSFGLAASEVVADRRP 609 (815)
Q Consensus 561 lp~G~tv~~~---iG--~~c~gAkV~~v~~nGr~~lVp----Ls~~L~~GD~VeI~ts 609 (815)
+|.|.|+.+. .| ...+...| ||. +|| .++.|+.||+|||++.
T Consensus 12 ~~~~~tl~~lL~~l~~~~~~vav~v-----Ng~--iv~r~~~~~~~l~~gD~vei~~~ 62 (66)
T PRK05659 12 LPDGESVAALLAREGLAGRRVAVEV-----NGE--IVPRSQHASTALREGDVVEIVHA 62 (66)
T ss_pred cCCCCCHHHHHHhcCCCCCeEEEEE-----CCe--EeCHHHcCcccCCCCCEEEEEEE
Confidence 5677776643 23 33444444 798 899 9999999999999763
No 67
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=84.74 E-value=2.8 Score=35.61 Aligned_cols=49 Identities=22% Similarity=0.280 Sum_probs=45.3
Q ss_pred CCCeEeCCCCCCHHHHHHHhCCCCceEEECCEEeCCCccCCCCCEEEEe
Q 003497 766 NGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVR 814 (815)
Q Consensus 766 ~G~i~~Lp~GsT~~DfAy~ihv~~~~~~VNg~lvpl~~~L~~GD~VeI~ 814 (815)
+|+-+....|+|.-++.-.+.-+.-.+-+||-..--|++|+.||.|-.|
T Consensus 6 N~k~~~~~~~~tl~~lr~~~k~~~DI~I~NGF~~~~d~~L~e~D~v~~I 54 (57)
T PF14453_consen 6 NEKEIETEENTTLFELRKESKPDADIVILNGFPTKEDIELKEGDEVFLI 54 (57)
T ss_pred CCEEEEcCCCcCHHHHHHhhCCCCCEEEEcCcccCCccccCCCCEEEEE
Confidence 7888999999999999999988888899999999999999999999765
No 68
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.
Probab=83.98 E-value=0.99 Score=35.90 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=32.6
Q ss_pred ccCCCceeee-------cCCeeeEEEEEEEccCCeeEEeecccccCCCCeEEEcC
Q 003497 561 LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRR 608 (815)
Q Consensus 561 lp~G~tv~~~-------iG~~c~gAkV~~v~~nGr~~lVpLs~~L~~GD~VeI~t 608 (815)
+|.|.++.++ .+...++|+| ||+ +++|++.+..|+.|+.++
T Consensus 13 ~~~~~t~~~~~~~~~~~~~~~~v~~~v-----ng~--~~dL~~~l~~~~~ie~i~ 60 (61)
T cd01667 13 FPKGTTPLDIAKSISPGLAKKAVAAKV-----NGE--LVDLSRPLEEDCELEIIT 60 (61)
T ss_pred eCCCCCHHHHHHHHHHHHHhheEEEEE-----CCE--EecCCcCcCCCCEEEEEe
Confidence 5667665553 3556788998 899 999999999999999875
No 69
>smart00363 S4 S4 RNA-binding domain.
Probab=82.30 E-value=1.1 Score=35.20 Aligned_cols=26 Identities=42% Similarity=0.584 Sum_probs=22.8
Q ss_pred CceEEECCEEe-CCCccCCCCCEEEEe
Q 003497 789 GKLVLVNGQLV-LPNTELKDGDIVEVR 814 (815)
Q Consensus 789 ~~~~~VNg~lv-pl~~~L~~GD~VeI~ 814 (815)
+..++|||+.+ ..++.|+.||+|++.
T Consensus 25 ~g~i~vng~~~~~~~~~l~~gd~i~~~ 51 (60)
T smart00363 25 QGRVKVNGKKVTKPSYIVKPGDVISVR 51 (60)
T ss_pred cCCEEECCEEecCCCeEeCCCCEEEEc
Confidence 45689999999 999999999999873
No 70
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=81.40 E-value=1.1 Score=53.87 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=39.4
Q ss_pred ccCCCceeee-------cCCeeeEEEEEEEccCCeeEEeecccccCCCCeEEEcCCCCc
Q 003497 561 LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQ 612 (815)
Q Consensus 561 lp~G~tv~~~-------iG~~c~gAkV~~v~~nGr~~lVpLs~~L~~GD~VeI~ts~~p 612 (815)
+|.|.|++++ .++++++|+| ||+ +++|++.+.+++.||++|..++
T Consensus 14 ~~~gtt~~dia~~~~~~~~~~~v~a~v-----ng~--l~dL~~~l~~d~~Vefi~~~~~ 65 (638)
T PRK00413 14 FEAGVTVADVAASISPGLAKAAVAGKV-----NGE--LVDLSTPIEEDASLEIITAKDE 65 (638)
T ss_pred eCCCCCHHHHHHHhhhhchhheEEEEE-----CCE--EeeCCccccCCCceeeeeccch
Confidence 6888887765 5789999999 899 9999999999999999987654
No 71
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=80.71 E-value=0.79 Score=41.76 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=12.0
Q ss_pred CeeEEeecccccCCCCeEEEcCC
Q 003497 587 GRELLVAVSFGLAASEVVADRRP 609 (815)
Q Consensus 587 Gr~~lVpLs~~L~~GD~VeI~ts 609 (815)
|| .|++++.|+.||.|||.+.
T Consensus 53 Gk--~~~~d~~L~~GDRVEIYRP 73 (84)
T PF03658_consen 53 GK--LVKLDTVLRDGDRVEIYRP 73 (84)
T ss_dssp E---S--TT-B--TT-EEEEE-S
T ss_pred ee--EcCCCCcCCCCCEEEEecc
Confidence 88 9999999999999999765
No 72
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=80.61 E-value=1.7 Score=39.23 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=26.3
Q ss_pred chhhhHHHHHHHHHHcCCCC---CCChhHHHHHhhhccccccc
Q 003497 125 PYLTHCIHTGRILAMLIPSS---GKRAVDTVVAGILHDVVDDA 164 (815)
Q Consensus 125 PYI~HpL~VA~ILa~L~~~~---g~~D~dtIaAALLHDvVEDT 164 (815)
+.+.|.+.|+.+...+.... ........+||||||+-+..
T Consensus 2 ~~~~Hs~~v~~~~~~~~~~~~~~~~~~~~l~~aaLlHDig~~~ 44 (145)
T cd00077 2 HRFEHSLRVAQLARRLAEELGLSEEDIELLRLAALLHDIGKPG 44 (145)
T ss_pred chHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhcCCcc
Confidence 45789999888776543210 01124577999999998854
No 73
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=80.19 E-value=1.5 Score=38.43 Aligned_cols=41 Identities=20% Similarity=0.262 Sum_probs=29.0
Q ss_pred ccCCCceeee---cCC--eeeEEEEEEEccCCeeEEee----cccccCCCCeEEEcC
Q 003497 561 LKMGHPVIRV---EGS--NLLAAVIIRVEKGGRELLVA----VSFGLAASEVVADRR 608 (815)
Q Consensus 561 lp~G~tv~~~---iG~--~c~gAkV~~v~~nGr~~lVp----Ls~~L~~GD~VeI~t 608 (815)
++.+.|+.+. .|- +-+...| ||. +|| .++.|++||.|||++
T Consensus 14 ~~~~~tv~dLL~~l~~~~~~vav~v-----Ng~--iVpr~~~~~~~l~~gD~ievv~ 63 (68)
T COG2104 14 IAEGTTVADLLAQLGLNPEGVAVAV-----NGE--IVPRSQWADTILKEGDRIEVVR 63 (68)
T ss_pred cCCCCcHHHHHHHhCCCCceEEEEE-----CCE--EccchhhhhccccCCCEEEEEE
Confidence 4555555543 333 3444444 899 999 999999999999976
No 74
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=80.05 E-value=1.8 Score=40.68 Aligned_cols=26 Identities=50% Similarity=0.718 Sum_probs=23.4
Q ss_pred CceEEECCEEeCCCccCCCCCEEEEe
Q 003497 789 GKLVLVNGQLVLPNTELKDGDIVEVR 814 (815)
Q Consensus 789 ~~~~~VNg~lvpl~~~L~~GD~VeI~ 814 (815)
..-|+|||+.+-+++.++.||+++|.
T Consensus 33 ~GrV~vNG~~aKpS~~VK~GD~l~i~ 58 (100)
T COG1188 33 GGRVKVNGQRAKPSKEVKVGDILTIR 58 (100)
T ss_pred CCeEEECCEEcccccccCCCCEEEEE
Confidence 34479999999999999999999986
No 75
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=77.68 E-value=1.9 Score=38.41 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=33.1
Q ss_pred ccCCCc-------eeeecCCeeeEEEEEEEccCCeeEEeecccccCCCCeEEEcC
Q 003497 561 LKMGHP-------VIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRR 608 (815)
Q Consensus 561 lp~G~t-------v~~~iG~~c~gAkV~~v~~nGr~~lVpLs~~L~~GD~VeI~t 608 (815)
||.|.| ||+.+...-+-|.|. +++ .|..+|.|+.||+|+|.+
T Consensus 28 l~~g~tv~d~a~~IH~d~~~~F~~A~v~----~~~--~vg~d~~l~d~DVv~i~~ 76 (76)
T cd04938 28 VKKGTTVGDVARKIHGDLEKGFIEAVGG----RRR--LEGKDVILGKNDILKFKT 76 (76)
T ss_pred EcCCCCHHHHHHHHhHHHHhccEEEEEc----cCE--EECCCEEecCCCEEEEEC
Confidence 455655 677788888889983 235 799999999999999975
No 76
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=77.30 E-value=1.8 Score=36.78 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=20.1
Q ss_pred CCeeEEeecc----cccCCCCeEEEcCC
Q 003497 586 GGRELLVAVS----FGLAASEVVADRRP 609 (815)
Q Consensus 586 nGr~~lVpLs----~~L~~GD~VeI~ts 609 (815)
||+ +||-+ +.|+.||.|+|++.
T Consensus 36 Ng~--~v~~~~~~~~~L~~gD~V~ii~~ 61 (65)
T cd00565 36 NGE--IVPRSEWASTPLQDGDRIEIVTA 61 (65)
T ss_pred CCE--EcCHHHcCceecCCCCEEEEEEe
Confidence 899 99999 99999999999853
No 77
>PRK07440 hypothetical protein; Provisional
Probab=76.26 E-value=2.5 Score=36.86 Aligned_cols=42 Identities=14% Similarity=0.142 Sum_probs=29.7
Q ss_pred ccCCCceeee---cCCe--eeEEEEEEEccCCeeEEee----cccccCCCCeEEEcCC
Q 003497 561 LKMGHPVIRV---EGSN--LLAAVIIRVEKGGRELLVA----VSFGLAASEVVADRRP 609 (815)
Q Consensus 561 lp~G~tv~~~---iG~~--c~gAkV~~v~~nGr~~lVp----Ls~~L~~GD~VeI~ts 609 (815)
++.|.|+.+. .|.. -+...+ ||. +|| -++.|+.||.|||++.
T Consensus 16 ~~~~~tl~~lL~~l~~~~~~vav~~-----N~~--iv~r~~w~~~~L~~gD~IEIv~~ 66 (70)
T PRK07440 16 CSSGTSLPDLLQQLGFNPRLVAVEY-----NGE--ILHRQFWEQTQVQPGDRLEIVTI 66 (70)
T ss_pred cCCCCCHHHHHHHcCCCCCeEEEEE-----CCE--EeCHHHcCceecCCCCEEEEEEE
Confidence 5667676543 2332 333333 899 999 9999999999999863
No 78
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=74.80 E-value=4.7 Score=42.99 Aligned_cols=60 Identities=15% Similarity=0.084 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCccccCcchhhhHHHHHHHHHHcCCC----CCCChhHHHHHhhhccccc
Q 003497 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPS----SGKRAVDTVVAGILHDVVD 162 (815)
Q Consensus 96 y~~~~~~~l~kA~~fA~~aH~GQ~RksGePYI~HpL~VA~ILa~L~~~----~g~~D~dtIaAALLHDvVE 162 (815)
..+.+.+.+++|.+++.+.+.. .-+.|.+.|......+... -+.......+||||||+.-
T Consensus 33 ~~iPdt~l~~~a~~~~~~~l~~-------~~~~Hs~RV~~~a~~ia~~e~~~~~~D~evl~lAALLHDIG~ 96 (228)
T TIGR03401 33 TPLPDTPLVKFAQEYAKARLPP-------ETYNHSLRVYYYGLAIARDQFPEWDLSDETWFLTCLLHDIGT 96 (228)
T ss_pred CCCCChHHHHHHHHHHHhhCCH-------hhhHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhcc
Confidence 3356889999999999877542 4478999987544322110 0122345669999999875
No 79
>PRK06437 hypothetical protein; Provisional
Probab=74.55 E-value=2.1 Score=37.05 Aligned_cols=22 Identities=14% Similarity=0.024 Sum_probs=20.2
Q ss_pred CCeeEEeecccccCCCCeEEEcCC
Q 003497 586 GGRELLVAVSFGLAASEVVADRRP 609 (815)
Q Consensus 586 nGr~~lVpLs~~L~~GD~VeI~ts 609 (815)
||+ +||.++.|+.||.|||++.
T Consensus 42 Ng~--iv~~~~~L~dgD~Veiv~~ 63 (67)
T PRK06437 42 NGS--PVLEDHNVKKEDDVLILEV 63 (67)
T ss_pred CCE--ECCCceEcCCCCEEEEEec
Confidence 899 9999999999999999753
No 80
>PRK01777 hypothetical protein; Validated
Probab=72.57 E-value=2.6 Score=39.15 Aligned_cols=23 Identities=22% Similarity=0.092 Sum_probs=20.8
Q ss_pred CCeeEEeecccccCCCCeEEEcCCC
Q 003497 586 GGRELLVAVSFGLAASEVVADRRPS 610 (815)
Q Consensus 586 nGr~~lVpLs~~L~~GD~VeI~ts~ 610 (815)
||+ .|.+++.|+.||.|||...-
T Consensus 55 ~Gk--~v~~d~~L~dGDRVeIyrPL 77 (95)
T PRK01777 55 YSR--PAKLTDVLRDGDRVEIYRPL 77 (95)
T ss_pred eCe--ECCCCCcCCCCCEEEEecCC
Confidence 799 89999999999999997663
No 81
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=71.87 E-value=3.6 Score=33.29 Aligned_cols=26 Identities=46% Similarity=0.759 Sum_probs=22.6
Q ss_pred CCceEEECCEEe-CCCccCCCCCEEEE
Q 003497 788 EGKLVLVNGQLV-LPNTELKDGDIVEV 813 (815)
Q Consensus 788 ~~~~~~VNg~lv-pl~~~L~~GD~VeI 813 (815)
..+.++|||+.+ .+++.++.||+|.+
T Consensus 24 ~~g~V~vn~~~~~~~~~~v~~~d~i~i 50 (70)
T cd00165 24 KHGHVLVNGKVVTKPSYKVKPGDVIEV 50 (70)
T ss_pred HcCCEEECCEEccCCccCcCCCCEEEE
Confidence 345689999999 89999999999876
No 82
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=70.96 E-value=4.4 Score=42.95 Aligned_cols=45 Identities=18% Similarity=0.226 Sum_probs=30.6
Q ss_pred cCcchhhhHHHHHHHHHHcCCCCCCChhHHHHHhhhccccccccC
Q 003497 122 TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACE 166 (815)
Q Consensus 122 sGePYI~HpL~VA~ILa~L~~~~g~~D~dtIaAALLHDvVEDT~v 166 (815)
+|..-+.|.++|+.+...+....|..-.-+..||||||+.--...
T Consensus 33 ~~~~~l~H~~~Va~lA~~Ia~~~g~D~~l~~~aaLLHDIg~~~~~ 77 (222)
T COG1418 33 YGQHVLEHSLRVAYLAYRIAEEEGVDPDLALRAALLHDIGKAIDH 77 (222)
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcccccc
Confidence 788889999999976543332223322346689999999875443
No 83
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=69.71 E-value=4.1 Score=36.69 Aligned_cols=23 Identities=43% Similarity=0.332 Sum_probs=21.0
Q ss_pred EEECCEEeCCCccCCCCCEEEEe
Q 003497 792 VLVNGQLVLPNTELKDGDIVEVR 814 (815)
Q Consensus 792 ~~VNg~lvpl~~~L~~GD~VeI~ 814 (815)
+.+|..+++++|+|++||.|-|+
T Consensus 56 ~~~~~~~~~~~t~L~dGDeVa~~ 78 (84)
T COG1977 56 AANNEFLVGLDTPLKDGDEVAFF 78 (84)
T ss_pred eeeceeeccccccCCCCCEEEEe
Confidence 47789999999999999999886
No 84
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=67.73 E-value=3.7 Score=34.46 Aligned_cols=24 Identities=46% Similarity=0.654 Sum_probs=20.1
Q ss_pred ceEEECCEEeCC--CccCCCCCEEEE
Q 003497 790 KLVLVNGQLVLP--NTELKDGDIVEV 813 (815)
Q Consensus 790 ~~~~VNg~lvpl--~~~L~~GD~VeI 813 (815)
.+++|||+.++. .++|++||++.|
T Consensus 42 ngt~vng~~l~~~~~~~L~~gd~i~~ 67 (68)
T PF00498_consen 42 NGTFVNGQRLGPGEPVPLKDGDIIRF 67 (68)
T ss_dssp S-EEETTEEESSTSEEEE-TTEEEEE
T ss_pred CcEEECCEEcCCCCEEECCCCCEEEc
Confidence 568999999999 899999999986
No 85
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=63.55 E-value=6.8 Score=33.51 Aligned_cols=22 Identities=0% Similarity=0.004 Sum_probs=19.1
Q ss_pred CCeeEEee----cccccCCCCeEEEcCC
Q 003497 586 GGRELLVA----VSFGLAASEVVADRRP 609 (815)
Q Consensus 586 nGr~~lVp----Ls~~L~~GD~VeI~ts 609 (815)
||+ +|| =++.|+.||.|||++.
T Consensus 37 N~~--iv~r~~w~~~~L~~gD~Ieii~~ 62 (66)
T PRK08053 37 NQQ--IIPREQWAQHIVQDGDQILLFQV 62 (66)
T ss_pred CCE--EeChHHcCccccCCCCEEEEEEE
Confidence 789 999 6678999999999864
No 86
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=63.50 E-value=6.8 Score=34.01 Aligned_cols=22 Identities=9% Similarity=0.024 Sum_probs=20.1
Q ss_pred CCeeEEeecccccCCCCeEEEcCC
Q 003497 586 GGRELLVAVSFGLAASEVVADRRP 609 (815)
Q Consensus 586 nGr~~lVpLs~~L~~GD~VeI~ts 609 (815)
||+ +|+-++.|+.||.|++++.
T Consensus 45 Ng~--iv~~~~~l~~gD~Veii~~ 66 (70)
T PRK08364 45 NGK--VALEDDPVKDGDYVEVIPV 66 (70)
T ss_pred CCE--ECCCCcCcCCCCEEEEEcc
Confidence 899 9999999999999999753
No 87
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=60.35 E-value=7.4 Score=33.59 Aligned_cols=22 Identities=0% Similarity=-0.080 Sum_probs=20.1
Q ss_pred CCeeEEeecc----cccCCCCeEEEcCC
Q 003497 586 GGRELLVAVS----FGLAASEVVADRRP 609 (815)
Q Consensus 586 nGr~~lVpLs----~~L~~GD~VeI~ts 609 (815)
||. +||=+ +.|+.||.|||++.
T Consensus 38 N~~--iv~r~~w~~~~L~~gD~iEIv~~ 63 (67)
T PRK07696 38 NKD--ILQKDDHTDTSVFDGDQIEIVTF 63 (67)
T ss_pred CCE--EeCHHHcCceecCCCCEEEEEEE
Confidence 899 99999 99999999999863
No 88
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=59.80 E-value=9.3 Score=32.42 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.6
Q ss_pred CCeeEEeec----ccccCCCCeEEEcCC
Q 003497 586 GGRELLVAV----SFGLAASEVVADRRP 609 (815)
Q Consensus 586 nGr~~lVpL----s~~L~~GD~VeI~ts 609 (815)
||+ +||- ++.|+.||.|||++.
T Consensus 36 N~~--iv~~~~~~~~~L~dgD~Ieiv~~ 61 (65)
T PRK06488 36 NGE--LVHKEARAQFVLHEGDRIEILSP 61 (65)
T ss_pred CCE--EcCHHHcCccccCCCCEEEEEEe
Confidence 789 9998 889999999999864
No 89
>PRK05327 rpsD 30S ribosomal protein S4; Validated
Probab=59.01 E-value=8.2 Score=40.45 Aligned_cols=27 Identities=44% Similarity=0.704 Sum_probs=23.5
Q ss_pred CCceEEECCEEeC-CCccCCCCCEEEEe
Q 003497 788 EGKLVLVNGQLVL-PNTELKDGDIVEVR 814 (815)
Q Consensus 788 ~~~~~~VNg~lvp-l~~~L~~GD~VeI~ 814 (815)
.+..++|||+.|. +++.|+.||+|+|.
T Consensus 116 ~~G~V~VNgk~v~~ps~~v~~GD~I~v~ 143 (203)
T PRK05327 116 SHGHILVNGKKVNIPSYRVKPGDVIEVR 143 (203)
T ss_pred HCCcEEECCEEECCCCcCCCCCCEEEEC
Confidence 3445899999997 89999999999985
No 90
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=58.32 E-value=3.5 Score=46.90 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=34.7
Q ss_pred CeEeCCCCCCHHHHHHHhCCCCc-eEEECCEE--eCCCccCCCCCEEEE
Q 003497 768 EIMRLRSGSTAADAAMKVGLEGK-LVLVNGQL--VLPNTELKDGDIVEV 813 (815)
Q Consensus 768 ~i~~Lp~GsT~~DfAy~ihv~~~-~~~VNg~l--vpl~~~L~~GD~VeI 813 (815)
|....+.|||++|++|.||-+.- .++-.|+. +==+|.+++||++..
T Consensus 320 Dfe~~fi~aevi~~~d~i~~~~~~~Akeag~~r~~GkdY~vqdGDVi~F 368 (372)
T COG0012 320 DFEKGFIRAEVISYADLIHYGGEAAAKEAGKRRLEGKDYIVQDGDVIHF 368 (372)
T ss_pred chhhccccceEeeHHHHHhcCcHHHHHHhcceeeccccceecCCCEEEE
Confidence 56778999999999999996652 23333333 566999999999954
No 91
>PRK10119 putative hydrolase; Provisional
Probab=58.08 E-value=19 Score=38.59 Aligned_cols=59 Identities=14% Similarity=0.152 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhhcCCccccCcchhhhHHHHHHHHHHcCCCCCCChhHHHHHhhhccccc
Q 003497 101 DEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (815)
Q Consensus 101 ~~~l~kA~~fA~~aH~GQ~RksGePYI~HpL~VA~ILa~L~~~~g~~D~dtIaAALLHDvVE 162 (815)
...+.++.+|+.....+ ..+|.. +.|...|......+....+....-..+|||||||..
T Consensus 4 ~~~~~~~~~~v~~~l~~--~~~~HD-~~Hi~RV~~lA~~Ia~~e~~D~~vv~lAAlLHDv~d 62 (231)
T PRK10119 4 QHWQAQFENWLKNHHQH--QDAAHD-ICHFRRVWATAQKLAADDDVDMLVVLTACYFHDIVS 62 (231)
T ss_pred HHHHHHHHHHHHHHhhc--CCCccC-hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcch
Confidence 34566777777776554 245555 567766654332221111222345679999999975
No 92
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=55.24 E-value=13 Score=33.59 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=23.0
Q ss_pred eeeEEEEEEEccCCeeEEeecccccCCCCeEEEcC
Q 003497 574 NLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRR 608 (815)
Q Consensus 574 ~c~gAkV~~v~~nGr~~lVpLs~~L~~GD~VeI~t 608 (815)
.=+|...+ ||+ -|+++|.++.||.|.+.-
T Consensus 47 tEV~~i~v----NG~--~v~~~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 47 TEVGLILV----NGR--PVDFDYRLKDGDRVAVYP 75 (81)
T ss_pred HHeEEEEE----CCE--ECCCcccCCCCCEEEEEe
Confidence 34455553 899 899999999999999853
No 93
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=54.77 E-value=10 Score=31.91 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=23.4
Q ss_pred cchhhhHHHHHHHHHHcCCCCCCChhHHHHHhhhccccc
Q 003497 124 DPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (815)
Q Consensus 124 ePYI~HpL~VA~ILa~L~~~~g~~D~dtIaAALLHDvVE 162 (815)
.+-..|.+.|+.....+....+........||||||+-.
T Consensus 3 ~~~~~H~~~v~~~a~~la~~~~~~~~~l~~AalLHDiG~ 41 (80)
T TIGR00277 3 QNVLQHSLEVAKLAEALARELGLDVELARRGALLHDIGK 41 (80)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHccCC
Confidence 344678888876655442211221234678999999754
No 94
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=53.66 E-value=13 Score=31.56 Aligned_cols=22 Identities=14% Similarity=0.045 Sum_probs=18.0
Q ss_pred CCeeEEee----cccccCCCCeEEEcCC
Q 003497 586 GGRELLVA----VSFGLAASEVVADRRP 609 (815)
Q Consensus 586 nGr~~lVp----Ls~~L~~GD~VeI~ts 609 (815)
||+ +|| -++.|+.||.|||++.
T Consensus 35 N~~--iv~~~~~~~~~L~~gD~veii~~ 60 (64)
T TIGR01683 35 NGE--IVPRSEWDDTILKEGDRIEIVTF 60 (64)
T ss_pred CCE--EcCHHHcCceecCCCCEEEEEEe
Confidence 789 886 3468999999999863
No 95
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=52.73 E-value=11 Score=45.55 Aligned_cols=28 Identities=25% Similarity=0.270 Sum_probs=24.9
Q ss_pred CCceEEECCEEeCCCccCCCCCEEEEeC
Q 003497 788 EGKLVLVNGQLVLPNTELKDGDIVEVRV 815 (815)
Q Consensus 788 ~~~~~~VNg~lvpl~~~L~~GD~VeI~t 815 (815)
..-.++|||++++|++++.+|+.||++|
T Consensus 34 ~~v~a~vng~l~dL~~~l~~d~~Vefi~ 61 (638)
T PRK00413 34 AAVAGKVNGELVDLSTPIEEDASLEIIT 61 (638)
T ss_pred heEEEEECCEEeeCCccccCCCceeeee
Confidence 3456799999999999999999999985
No 96
>TIGR01017 rpsD_bact ribosomal protein S4, bacterial/organelle type. This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4.
Probab=51.62 E-value=13 Score=38.84 Aligned_cols=27 Identities=33% Similarity=0.726 Sum_probs=23.0
Q ss_pred CCceEEECCEEe-CCCccCCCCCEEEEe
Q 003497 788 EGKLVLVNGQLV-LPNTELKDGDIVEVR 814 (815)
Q Consensus 788 ~~~~~~VNg~lv-pl~~~L~~GD~VeI~ 814 (815)
.+.-|.|||+.| .+++.++.||+|+|.
T Consensus 113 ~~G~V~VNgk~v~~ps~~V~~GD~I~V~ 140 (200)
T TIGR01017 113 SHGHILVNGKKVDIPSYQVRPGDIISIK 140 (200)
T ss_pred HCCCEEECCEEeCCCCCCCCCCCEEEEe
Confidence 344589999999 689999999999985
No 97
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=51.42 E-value=31 Score=30.92 Aligned_cols=55 Identities=27% Similarity=0.438 Sum_probs=38.2
Q ss_pred eEEEEcCCCCeEeCCCCCCHHHHHHHhCCC-----------------Cc---e-EEECCEE-eC-CCccCCCCCEEEE
Q 003497 759 VVIVCWPNGEIMRLRSGSTAADAAMKVGLE-----------------GK---L-VLVNGQL-VL-PNTELKDGDIVEV 813 (815)
Q Consensus 759 ~v~VftP~G~i~~Lp~GsT~~DfAy~ihv~-----------------~~---~-~~VNg~l-vp-l~~~L~~GD~VeI 813 (815)
+.+-|+=+|+-+..++|.|.++++.+.|+. +. | |.|||+. |+ =.|++++|-.|+-
T Consensus 2 ~~v~i~idG~~v~~~~G~til~al~~~gi~ip~~c~~~~~r~~~~~~g~C~~C~Vev~g~~~v~AC~t~v~~GM~V~T 79 (82)
T PF13510_consen 2 KMVTITIDGKPVEVPPGETILEALLAAGIDIPRLCYHGRPRGGLCPIGSCRLCLVEVDGEPNVRACSTPVEDGMVVET 79 (82)
T ss_dssp EEEEEEETTEEEEEEET-BHHHHHHHTT--B-EETTTS-EEBSSSSSTT-SS-EEEESSEEEEETTT-B--TTEEEE-
T ss_pred CEEEEEECCEEEEEcCCCHHHHHHHHCCCeEEEeeeccCcccccCCccccceEEEEECCCcceEcccCCCcCCcEEEE
Confidence 345778899999999999999999998611 11 2 7999987 53 3688999988864
No 98
>PF06071 YchF-GTPase_C: Protein of unknown function (DUF933); InterPro: IPR013029 This domain is found at the C terminus of family of conserved hypothetical proteins found in both prokaryotes and eukaryotes. While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined []. This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and this C-terminal domain which is composed of a six-stranded half-barrel curved around an alpha helix. The central domain and this domain are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; PDB: 1NI3_A 1JAL_A 2DWQ_B 2DBY_A 2OHF_A.
Probab=48.79 E-value=12 Score=34.26 Aligned_cols=46 Identities=28% Similarity=0.386 Sum_probs=26.8
Q ss_pred eEeCCCCCCHHHHHHHhCC-------CCce--------------EEECCE--EeCCCccCCCCCEEEEe
Q 003497 769 IMRLRSGSTAADAAMKVGL-------EGKL--------------VLVNGQ--LVLPNTELKDGDIVEVR 814 (815)
Q Consensus 769 i~~Lp~GsT~~DfAy~ihv-------~~~~--------------~~VNg~--lvpl~~~L~~GD~VeI~ 814 (815)
--.++.|+|+.++|-.||- .... +|=.|+ +.-=+|.++|||||.++
T Consensus 14 aWti~~G~~Ap~aAG~IHsDfekgFI~Aevi~~~d~~~~~s~~~~k~~Gk~r~eGK~YivqDGDIi~f~ 82 (84)
T PF06071_consen 14 AWTIRKGTTAPQAAGVIHSDFEKGFIRAEVISYDDFVEYGSEAAAKEAGKLRLEGKDYIVQDGDIIHFR 82 (84)
T ss_dssp EEEEETT-BHHHHHHCC-THHHHHEEEEEEEEHHHHHHHTSHHHHHHTT-SEEEETT-B--TTEEEEEE
T ss_pred EEEccCCCCHHHhHhHHHHHHHhhceEEEEEcHHHHHHcCCHHHHHHcCCccccCCceeEeCCCEEEEE
Confidence 3468999999999999981 1100 111333 44459999999999875
No 99
>CHL00113 rps4 ribosomal protein S4; Reviewed
Probab=48.70 E-value=15 Score=38.71 Aligned_cols=28 Identities=36% Similarity=0.648 Sum_probs=23.6
Q ss_pred CCCceEEECCEEe-CCCccCCCCCEEEEe
Q 003497 787 LEGKLVLVNGQLV-LPNTELKDGDIVEVR 814 (815)
Q Consensus 787 v~~~~~~VNg~lv-pl~~~L~~GD~VeI~ 814 (815)
|.+.-|.|||+.| -+++.++.||+|+|.
T Consensus 111 I~~G~V~VNGk~v~~ps~~Vk~GD~I~V~ 139 (201)
T CHL00113 111 VNHGHILVNGRIVDIPSYRCKPKDIITVK 139 (201)
T ss_pred HHCCcEEECCEEecCccccCCCCCEEEEc
Confidence 4445689999999 679999999999984
No 100
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=47.74 E-value=11 Score=37.38 Aligned_cols=39 Identities=21% Similarity=0.410 Sum_probs=24.6
Q ss_pred cchhhhHHHHHHHHHHcCCCCCCChhHHHHHhhhccccc
Q 003497 124 DPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (815)
Q Consensus 124 ePYI~HpL~VA~ILa~L~~~~g~~D~dtIaAALLHDvVE 162 (815)
+.-+.|.+.||.+...+....+......-+||||||+=.
T Consensus 7 ~~r~~Hsl~Va~~a~~lA~~~~~d~e~a~~AGLLHDIGk 45 (158)
T TIGR00488 7 EHRYQHCLGVGQTAKQLAEANKLDSKKAEIAGAYHDLAK 45 (158)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhc
Confidence 345789999886643222111122356789999999876
No 101
>COG0522 RpsD Ribosomal protein S4 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=47.53 E-value=20 Score=37.93 Aligned_cols=28 Identities=36% Similarity=0.515 Sum_probs=23.8
Q ss_pred CCCceEEECCEEeC-CCccCCCCCEEEEe
Q 003497 787 LEGKLVLVNGQLVL-PNTELKDGDIVEVR 814 (815)
Q Consensus 787 v~~~~~~VNg~lvp-l~~~L~~GD~VeI~ 814 (815)
|.|..+.|||+.|. ++|.++-||.|+|.
T Consensus 116 V~HGHI~VnGk~V~iPSy~V~~gdei~V~ 144 (205)
T COG0522 116 VSHGHILVNGKRVNIPSYLVSPGDEISVR 144 (205)
T ss_pred hhcceEEECCEEeccCcEEecCCCEEEee
Confidence 55566899999996 68999999999985
No 102
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=45.71 E-value=17 Score=30.62 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.0
Q ss_pred CCeeEEeec----ccccCCCCeEEEcCC
Q 003497 586 GGRELLVAV----SFGLAASEVVADRRP 609 (815)
Q Consensus 586 nGr~~lVpL----s~~L~~GD~VeI~ts 609 (815)
||+ +||- ++.|+.||.|||++.
T Consensus 36 N~~--~v~~~~~~~~~L~~gD~vei~~~ 61 (65)
T PRK06944 36 NGD--FVARTQHAARALAAGDRLDLVQP 61 (65)
T ss_pred CCE--EcCchhcccccCCCCCEEEEEee
Confidence 789 8886 689999999999864
No 103
>TIGR03069 PS_II_S4 photosystem II S4 domain protein. Members of this protein family are about 265 residues long and each contains an S4 RNA-binding domain of about 48 residues. The member from the Cyanobacterium, Synechocystis sp. PCC 6803, was detected as a novel polypeptide in a highly purified preparation of active photosystem II (Kashino, et al., 2002). The phylogenetic distribution, including Cyanobacteria and Arabidopsis, supports a role in photosystem II, although the high bit score cutoffs for this model reflect similar sequences in non-photosynthetic organisms such as Carboxydothermus hydrogenoformans, a Gram-positive bacterium.
Probab=45.56 E-value=19 Score=39.12 Aligned_cols=28 Identities=32% Similarity=0.471 Sum_probs=24.4
Q ss_pred CCCceEEECCEEe-CCCccCCCCCEEEEe
Q 003497 787 LEGKLVLVNGQLV-LPNTELKDGDIVEVR 814 (815)
Q Consensus 787 v~~~~~~VNg~lv-pl~~~L~~GD~VeI~ 814 (815)
+...-|+|||+.| -.++.++.||+|+|+
T Consensus 205 I~~G~V~VNg~~v~~~s~~v~~gD~Isvr 233 (257)
T TIGR03069 205 IKAGRLRLNWKTVTQPSRELKVGDRLQLR 233 (257)
T ss_pred HHCCeEEECCEEcCCCCCcCCCCCEEEEc
Confidence 4556689999999 799999999999986
No 104
>PLN00051 RNA-binding S4 domain-containing protein; Provisional
Probab=43.58 E-value=20 Score=39.31 Aligned_cols=28 Identities=39% Similarity=0.394 Sum_probs=24.2
Q ss_pred CCCceEEECCEEe-CCCccCCCCCEEEEe
Q 003497 787 LEGKLVLVNGQLV-LPNTELKDGDIVEVR 814 (815)
Q Consensus 787 v~~~~~~VNg~lv-pl~~~L~~GD~VeI~ 814 (815)
+....|+|||+.+ ..++.++.||+|.|+
T Consensus 213 I~~g~V~vN~~~v~~~s~~v~~gD~isiR 241 (267)
T PLN00051 213 ISSGDVRVNWREVTKNGTTLKTGDVVSVS 241 (267)
T ss_pred HHcCcEEECCEEcCCCCCCCCCCCEEEEe
Confidence 4455689999997 799999999999987
No 105
>PRK11507 ribosome-associated protein; Provisional
Probab=43.41 E-value=24 Score=31.35 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=21.3
Q ss_pred CCCceEEECCEEeCC-CccCCCCCEEEE
Q 003497 787 LEGKLVLVNGQLVLP-NTELKDGDIVEV 813 (815)
Q Consensus 787 v~~~~~~VNg~lvpl-~~~L~~GD~VeI 813 (815)
+....|+|||....- ..+|++||+|++
T Consensus 34 I~eg~V~VNGeve~rRgkKl~~GD~V~~ 61 (70)
T PRK11507 34 IAEGQVKVDGAVETRKRCKIVAGQTVSF 61 (70)
T ss_pred HHcCceEECCEEecccCCCCCCCCEEEE
Confidence 445668999997654 358999999997
No 106
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=42.38 E-value=24 Score=36.14 Aligned_cols=36 Identities=31% Similarity=0.461 Sum_probs=26.0
Q ss_pred cccCcch--hhhHHHHHHHHHHcCCCCCCChhHHHHHhhhccc
Q 003497 120 RKTGDPY--LTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDV 160 (815)
Q Consensus 120 RksGePY--I~HpL~VA~ILa~L~~~~g~~D~dtIaAALLHDv 160 (815)
-.+|+|. ..|.++.|. ||+--+ .+.+.|+||||||+
T Consensus 23 ~y~ge~VTq~eHaLQ~At-lAerdG----a~~~lVaaALLHDi 60 (186)
T COG4341 23 GYSGEPVTQLEHALQCAT-LAERDG----ADTALVAAALLHDI 60 (186)
T ss_pred ccccCcchhhhhHHHHhH-HHHhcC----CcHHHHHHHHHHhH
Confidence 3578875 579999875 444322 36789999999996
No 107
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=41.60 E-value=22 Score=30.72 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=20.1
Q ss_pred CCeeEEeecccccCCCCeEEEcCC
Q 003497 586 GGRELLVAVSFGLAASEVVADRRP 609 (815)
Q Consensus 586 nGr~~lVpLs~~L~~GD~VeI~ts 609 (815)
||+ +|+.++.|+.||.|+|+..
T Consensus 55 Ng~--~v~~~~~l~~gD~v~i~pp 76 (80)
T cd00754 55 NGE--YVRLDTPLKDGDEVAIIPP 76 (80)
T ss_pred CCe--EcCCCcccCCCCEEEEeCC
Confidence 799 8999999999999999754
No 108
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=39.92 E-value=31 Score=31.07 Aligned_cols=30 Identities=23% Similarity=0.149 Sum_probs=24.2
Q ss_pred CeeeEEEEEEEccCCeeEEeecccccCCCCeEEEcCC
Q 003497 573 SNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRP 609 (815)
Q Consensus 573 ~~c~gAkV~~v~~nGr~~lVpLs~~L~~GD~VeI~ts 609 (815)
..|+.+.+ |.. ++++++.|+.||.|.|+..
T Consensus 51 ~~~v~~~~-----~~~--~~~~~t~L~dGDeVa~~PP 80 (84)
T COG1977 51 NIVVNAAN-----NEF--LVGLDTPLKDGDEVAFFPP 80 (84)
T ss_pred cceEEeee-----cee--eccccccCCCCCEEEEeCC
Confidence 46676665 455 9999999999999999753
No 109
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=39.83 E-value=22 Score=35.85 Aligned_cols=41 Identities=20% Similarity=0.316 Sum_probs=24.6
Q ss_pred CcchhhhHHHHHHHHH---HcCCCCC--CChhHHHHHhhhcccccc
Q 003497 123 GDPYLTHCIHTGRILA---MLIPSSG--KRAVDTVVAGILHDVVDD 163 (815)
Q Consensus 123 GePYI~HpL~VA~ILa---~L~~~~g--~~D~dtIaAALLHDvVED 163 (815)
....+.|.+.|+.+.. ......+ ..-....+||||||+-..
T Consensus 11 ~~~~~~Hs~~Va~~A~~ia~~~~~~~~~~d~~~l~~aaLLHDIGK~ 56 (164)
T TIGR00295 11 DESVRRHCLAVARVAMELAENIRKKGHEVDMDLVLKGALLHDIGRA 56 (164)
T ss_pred CccHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHhcCCcc
Confidence 3455789999886633 2211001 112457799999998653
No 110
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=39.03 E-value=16 Score=38.11 Aligned_cols=43 Identities=23% Similarity=0.419 Sum_probs=28.2
Q ss_pred CcchhhhHHHHHHHHHHcCCCCCCChhHHHHHhhhcccccccc
Q 003497 123 GDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165 (815)
Q Consensus 123 GePYI~HpL~VA~ILa~L~~~~g~~D~dtIaAALLHDvVEDT~ 165 (815)
.++-+.|++.||....+|..-.+.....+-+||+|||..-+-+
T Consensus 15 ~~kR~~H~l~V~~~A~~LA~~y~~d~~kA~~AgilHD~aK~~p 57 (187)
T COG1713 15 SEKRFEHCLGVAETAIELAEAYGLDPEKAYLAGILHDIAKELP 57 (187)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhCC
Confidence 3456899999987654332211222345779999999987654
No 111
>cd04867 TGS_YchF_C TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the family contain a C-terminal TGS domain. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=38.47 E-value=30 Score=31.73 Aligned_cols=43 Identities=26% Similarity=0.367 Sum_probs=32.1
Q ss_pred CeEeCCCCCCHHHHHHHhC--CCC--ce-----------------------EEECCEEeCCCccCCCCCEEEEe
Q 003497 768 EIMRLRSGSTAADAAMKVG--LEG--KL-----------------------VLVNGQLVLPNTELKDGDIVEVR 814 (815)
Q Consensus 768 ~i~~Lp~GsT~~DfAy~ih--v~~--~~-----------------------~~VNg~lvpl~~~L~~GD~VeI~ 814 (815)
+--.++.|+|+-++|-.|| +.- .+ ++.-|+ +|.+++||++.++
T Consensus 13 RAWti~~g~tAp~AAG~IHsDfekgFIrAeVi~~~d~i~~g~~~~ak~~Gkir~eGK----~Yiv~DGDi~~f~ 82 (83)
T cd04867 13 RAWTIRKGTKAPQAAGVIHTDFEKGFIRAEVMKYEDLVELGSEAAAKEAGKYRQEGK----DYVVQDGDIIFFK 82 (83)
T ss_pred EEEEccCCCChHHhcCCcccccccCcEEEEEEcHHHHHHcCCHHHHHHcChhhhhCC----ceEeeCCeEEEEE
Confidence 3457899999999999998 211 01 244555 8999999999875
No 112
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=38.28 E-value=85 Score=26.32 Aligned_cols=56 Identities=13% Similarity=0.230 Sum_probs=40.8
Q ss_pred eEEEEcCCCCe--EeCCCCCCHHHHHHHhC----CCC--ceEEECCEEeC-----CCccCCCCCEEEEe
Q 003497 759 VVIVCWPNGEI--MRLRSGSTAADAAMKVG----LEG--KLVLVNGQLVL-----PNTELKDGDIVEVR 814 (815)
Q Consensus 759 ~v~VftP~G~i--~~Lp~GsT~~DfAy~ih----v~~--~~~~VNg~lvp-----l~~~L~~GD~VeI~ 814 (815)
.|+|=+++|+. ++++...|+.|+-.+|. +.. .....||++.. -+|.+++|++|.++
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~ 70 (72)
T cd01809 2 EIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLV 70 (72)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEE
Confidence 37888998885 56678999999988884 332 12356888766 34568999998875
No 113
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=36.59 E-value=18 Score=32.96 Aligned_cols=22 Identities=14% Similarity=0.164 Sum_probs=18.6
Q ss_pred CCeeEEeec----ccccCCCCeEEEcCC
Q 003497 586 GGRELLVAV----SFGLAASEVVADRRP 609 (815)
Q Consensus 586 nGr~~lVpL----s~~L~~GD~VeI~ts 609 (815)
||. +||= ++.|+.||.|||++.
T Consensus 55 Ng~--iVpr~~w~~t~L~egD~IEIv~~ 80 (84)
T PRK06083 55 NNQ--VVPRSEWQSTVLSSGDAISLFQA 80 (84)
T ss_pred CCE--EeCHHHcCcccCCCCCEEEEEEE
Confidence 789 8884 578999999999864
No 114
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=36.45 E-value=62 Score=40.37 Aligned_cols=56 Identities=29% Similarity=0.411 Sum_probs=45.2
Q ss_pred ceEEEEcCCCCeEeCCCCCCHHHHHHHhC--CCC--------------ce-EEECCEEeC-CCccCCCCCEEEE
Q 003497 758 EVVIVCWPNGEIMRLRSGSTAADAAMKVG--LEG--------------KL-VLVNGQLVL-PNTELKDGDIVEV 813 (815)
Q Consensus 758 ~~v~VftP~G~i~~Lp~GsT~~DfAy~ih--v~~--------------~~-~~VNg~lvp-l~~~L~~GD~VeI 813 (815)
+..+..|=+|+-+..|.|+|.+++|-+-| |.+ .| |-|||++++ -+|++.+|..|..
T Consensus 3 ~~~i~vtidg~~~~v~~G~tiL~a~~~~gI~iP~iCy~~~l~pi~sCd~ClVEidG~l~rsCsT~v~dGm~v~t 76 (978)
T COG3383 3 EKMITVTIDGRSIEVEEGTTILRAANRNGIEIPHICYHESLGPIGSCDTCLVEIDGKLVRSCSTPVEDGMVVRT 76 (978)
T ss_pred ceeEEEEECCeEEecCCChHHHHHHHhcCCcccceeccCCCCcccccceEEEEecCceeccccccccCCcEEec
Confidence 34467788999999999999999999976 222 22 699999987 4899999998854
No 115
>PRK00106 hypothetical protein; Provisional
Probab=36.24 E-value=25 Score=42.17 Aligned_cols=42 Identities=26% Similarity=0.435 Sum_probs=27.4
Q ss_pred cCcchhhhHHHHHHHHHHcCCCCCCChhHHHHHhhhcccccc
Q 003497 122 TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163 (815)
Q Consensus 122 sGePYI~HpL~VA~ILa~L~~~~g~~D~dtIaAALLHDvVED 163 (815)
.|...+.|.++||.+...+....|......-.||||||+=.-
T Consensus 347 y~qnl~~HSv~VA~lA~~lA~~lgld~e~a~~AGLLHDIGK~ 388 (535)
T PRK00106 347 YGQNVLRHSVEVGKLAGILAGELGENVALARRAGFLHDMGKA 388 (535)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCc
Confidence 467778999999876422211112222567799999998665
No 116
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=35.51 E-value=20 Score=40.23 Aligned_cols=40 Identities=20% Similarity=0.424 Sum_probs=26.2
Q ss_pred cchhhhHHHHHHHHHHcCCCCCCChhHHHHHhhhcccccc
Q 003497 124 DPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163 (815)
Q Consensus 124 ePYI~HpL~VA~ILa~L~~~~g~~D~dtIaAALLHDvVED 163 (815)
++.+.|.+.||.+...+....|..+.+.-+||||||+=..
T Consensus 195 ~~~~~HSl~VA~~A~~LA~~~g~d~~~a~~AGLLHDIGK~ 234 (342)
T PRK07152 195 EYRYKHCLRVAQLAAELAKKNNLDPKKAYYAGLYHDITKE 234 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhhcc
Confidence 4567899999876543321112224678899999998663
No 117
>COG2302 Uncharacterized conserved protein, contains S4-like domain [Function unknown]
Probab=33.58 E-value=33 Score=37.37 Aligned_cols=28 Identities=32% Similarity=0.517 Sum_probs=25.9
Q ss_pred CCCceEEECCEEeC-CCccCCCCCEEEEe
Q 003497 787 LEGKLVLVNGQLVL-PNTELKDGDIVEVR 814 (815)
Q Consensus 787 v~~~~~~VNg~lvp-l~~~L~~GD~VeI~ 814 (815)
|..+-|+||.+.|. .+++++-||.+.|+
T Consensus 202 Ie~g~VkVN~k~v~~~s~~v~~GDliSir 230 (257)
T COG2302 202 IEKGKVKVNWKVVDKASYEVQEGDLISIR 230 (257)
T ss_pred HHcCceEEeeEEeccccceeccCCEEEEe
Confidence 77788999999999 99999999999986
No 118
>PRK11025 23S rRNA pseudouridylate synthase C; Provisional
Probab=33.37 E-value=32 Score=38.19 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.4
Q ss_pred CceEEECCEEeCCCccCCCCCEEEE
Q 003497 789 GKLVLVNGQLVLPNTELKDGDIVEV 813 (815)
Q Consensus 789 ~~~~~VNg~lvpl~~~L~~GD~VeI 813 (815)
...++|||+.+..++.|+.||+|+|
T Consensus 44 ~G~V~VNg~~v~~~~~v~~GD~I~i 68 (317)
T PRK11025 44 KGEVRVNKKRIKPEYKLEAGDEVRI 68 (317)
T ss_pred cCCEEECCEEcCcccccCCCCEEEe
Confidence 4467999999999999999999987
No 119
>PRK12705 hypothetical protein; Provisional
Probab=32.21 E-value=33 Score=40.88 Aligned_cols=42 Identities=21% Similarity=0.395 Sum_probs=27.9
Q ss_pred cCcchhhhHHHHHHHHHHcCCCCCCChhHHHHHhhhcccccc
Q 003497 122 TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163 (815)
Q Consensus 122 sGePYI~HpL~VA~ILa~L~~~~g~~D~dtIaAALLHDvVED 163 (815)
.|...+.|.+.||.+...+...-|........||||||+=.-
T Consensus 320 ygqnvl~HSl~VA~lA~~LA~~lGld~d~a~~AGLLHDIGK~ 361 (508)
T PRK12705 320 YGQNVLSHSLEVAHLAGIIAAEIGLDPALAKRAGLLHDIGKS 361 (508)
T ss_pred CCchHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHcCCc
Confidence 466678999999976543322112223457799999999764
No 120
>COG0564 RluA Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]
Probab=32.06 E-value=32 Score=37.98 Aligned_cols=25 Identities=44% Similarity=0.628 Sum_probs=22.8
Q ss_pred ceEEECCEEeCCCccCCCCCEEEEe
Q 003497 790 KLVLVNGQLVLPNTELKDGDIVEVR 814 (815)
Q Consensus 790 ~~~~VNg~lvpl~~~L~~GD~VeI~ 814 (815)
..++|||+.|-.++.|+.||+|++-
T Consensus 37 g~v~vNg~~v~~~~~l~~gd~i~~~ 61 (289)
T COG0564 37 GRVRVNGKKVKPSYKLKPGDVVRIP 61 (289)
T ss_pred CCEEECCEEccCCeeeCCCCEEEEe
Confidence 3789999999999999999999874
No 121
>COG1078 HD superfamily phosphohydrolases [General function prediction only]
Probab=30.73 E-value=31 Score=40.16 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=21.9
Q ss_pred hhhhHHHHHHHHHHcCCC--CCCCh-------hHHHHHhhhccc
Q 003497 126 YLTHCIHTGRILAMLIPS--SGKRA-------VDTVVAGILHDV 160 (815)
Q Consensus 126 YI~HpL~VA~ILa~L~~~--~g~~D-------~dtIaAALLHDv 160 (815)
-+.|+|.|..+...+... ....+ ..+.+||||||+
T Consensus 52 RFeHSLGV~~la~~~~~~l~~~~~~~~~~~~~~~~~~AALLHDI 95 (421)
T COG1078 52 RFEHSLGVYHLARRLLEHLEKNSEEEIDEEERLLVRLAALLHDI 95 (421)
T ss_pred ccchhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHcc
Confidence 479999998776544320 00000 037899999997
No 122
>PRK12704 phosphodiesterase; Provisional
Probab=30.56 E-value=37 Score=40.61 Aligned_cols=42 Identities=24% Similarity=0.370 Sum_probs=26.2
Q ss_pred cCcchhhhHHHHHHHHHHcCCCCCCChhHHHHHhhhcccccc
Q 003497 122 TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163 (815)
Q Consensus 122 sGePYI~HpL~VA~ILa~L~~~~g~~D~dtIaAALLHDvVED 163 (815)
.|...+.|.+.||.+...+...-|........||||||+=.-
T Consensus 332 ~~qn~l~Hs~~Va~lA~~lA~~lgld~~~a~~AgLLHDIGK~ 373 (520)
T PRK12704 332 YGQNVLQHSIEVAHLAGLMAAELGLDVKLAKRAGLLHDIGKA 373 (520)
T ss_pred CCCcHhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHccCcC
Confidence 355677899999876432211112223557799999997553
No 123
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=30.51 E-value=40 Score=28.78 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=20.0
Q ss_pred CCeeEEeec---ccccCCCCeEEEcCC
Q 003497 586 GGRELLVAV---SFGLAASEVVADRRP 609 (815)
Q Consensus 586 nGr~~lVpL---s~~L~~GD~VeI~ts 609 (815)
||+ +++- ++.|+.||.|+|+..
T Consensus 49 N~~--~v~~~~~~~~l~~gD~V~i~pp 73 (77)
T PF02597_consen 49 NGE--IVPDDGLDTPLKDGDEVAILPP 73 (77)
T ss_dssp TTE--EEGGGTTTSBEETTEEEEEEES
T ss_pred CCE--EcCCccCCcCcCCCCEEEEECC
Confidence 899 9999 999999999999753
No 124
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=30.07 E-value=44 Score=29.41 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=19.8
Q ss_pred CCeeEEeecccccCCCCeEEEcCC
Q 003497 586 GGRELLVAVSFGLAASEVVADRRP 609 (815)
Q Consensus 586 nGr~~lVpLs~~L~~GD~VeI~ts 609 (815)
||+ .|+.++.|+.||.|+++..
T Consensus 57 N~~--~v~~~~~l~dgDeVai~Pp 78 (82)
T PLN02799 57 NEE--YTTESAALKDGDELAIIPP 78 (82)
T ss_pred CCE--EcCCCcCcCCCCEEEEeCC
Confidence 789 7999999999999999754
No 125
>PRK10348 ribosome-associated heat shock protein Hsp15; Provisional
Probab=29.99 E-value=53 Score=32.57 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=23.3
Q ss_pred CCceEEECCEEeCCCccCCCCCEEEEe
Q 003497 788 EGKLVLVNGQLVLPNTELKDGDIVEVR 814 (815)
Q Consensus 788 ~~~~~~VNg~lvpl~~~L~~GD~VeI~ 814 (815)
....|+|||+.+-+..+++.||.|.|.
T Consensus 32 ~~G~V~vnG~~~Kps~~V~~gd~l~v~ 58 (133)
T PRK10348 32 EGGKVHYNGQRSKPSKIVELNATLTLR 58 (133)
T ss_pred HCCCEEECCEECCCCCccCCCCEEEEE
Confidence 334579999999999999999999874
No 126
>PTZ00258 GTP-binding protein; Provisional
Probab=29.25 E-value=34 Score=39.48 Aligned_cols=49 Identities=8% Similarity=0.152 Sum_probs=38.0
Q ss_pred ccCCCc-------eeeecCCeeeEEEEEEEc------------cCCeeEEeecccccCCCCeEEEcCC
Q 003497 561 LKMGHP-------VIRVEGSNLLAAVIIRVE------------KGGRELLVAVSFGLAASEVVADRRP 609 (815)
Q Consensus 561 lp~G~t-------v~~~iG~~c~gAkV~~v~------------~nGr~~lVpLs~~L~~GD~VeI~ts 609 (815)
+|.|.| ||+.++-.-+-|+|++-+ .-|+..++--+|.++.||+|++..+
T Consensus 320 i~~Gsta~~aAg~IHsD~~kgFi~Aev~~~~d~~~~g~~~~ak~~g~~r~eGkdYiv~DGDIi~f~fn 387 (390)
T PTZ00258 320 IQKGTKAPQAAGVIHSDFEKGFICAEVMKYEDFLELGSEAAVKAEGKYRQEGKDYVVQDGDIIFFKFN 387 (390)
T ss_pred eCCCCcHHHHHhhhhhHHhhCcEEEEECcHHHHHHcCCHHHHHhcCceeeeCCceEecCCCEEEEEec
Confidence 677766 788888778888885432 3475558999999999999999754
No 127
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=28.05 E-value=93 Score=34.76 Aligned_cols=50 Identities=18% Similarity=0.182 Sum_probs=38.3
Q ss_pred cCCCCeEeC-CCCCCHHHHHHHhC--CCC-------------c-e-EEECCE--Ee-CCCccCCCCCEEEE
Q 003497 764 WPNGEIMRL-RSGSTAADAAMKVG--LEG-------------K-L-VLVNGQ--LV-LPNTELKDGDIVEV 813 (815)
Q Consensus 764 tP~G~i~~L-p~GsT~~DfAy~ih--v~~-------------~-~-~~VNg~--lv-pl~~~L~~GD~VeI 813 (815)
+=+|.-++. |.|.|.+|+|.+.| |.. + | |.|+|+ +| .=.|+.++|-.|.-
T Consensus 72 ~IDGk~VeV~~~G~TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEVeG~~~lv~AC~tpV~eGM~V~T 142 (297)
T PTZ00305 72 FVNKRPVEIIPQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQVDGTQNLVVSCATVALPGMSIIT 142 (297)
T ss_pred EECCEEEEecCCCChHHHHHHHcCCCcCccccCCCCCCCCccceeEEEECCCcCcccccCCcCCCCCEEEe
Confidence 349999999 99999999999987 222 1 2 689986 43 34788899988864
No 128
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=27.76 E-value=40 Score=40.19 Aligned_cols=40 Identities=25% Similarity=0.432 Sum_probs=24.8
Q ss_pred CcchhhhHHHHHHHHHHcCCCCCCChhHHHHHhhhccccc
Q 003497 123 GDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (815)
Q Consensus 123 GePYI~HpL~VA~ILa~L~~~~g~~D~dtIaAALLHDvVE 162 (815)
|...+.|.+.||.+...+...-|........||||||+--
T Consensus 327 ~~~~l~Hs~~VA~lA~~LA~~lgld~~~a~~AGLLHDIGK 366 (514)
T TIGR03319 327 GQNVLQHSIEVAHLAGIMAAELGEDVKLAKRAGLLHDIGK 366 (514)
T ss_pred CccHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcCc
Confidence 4446789999997743222111222345668999999855
No 129
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=27.49 E-value=64 Score=33.91 Aligned_cols=40 Identities=28% Similarity=0.290 Sum_probs=30.6
Q ss_pred EeCCCCCCHHHHHHHhC----------CCC------ce-EEECCEEe-CCCccCCC-CC
Q 003497 770 MRLRSGSTAADAAMKVG----------LEG------KL-VLVNGQLV-LPNTELKD-GD 809 (815)
Q Consensus 770 ~~Lp~GsT~~DfAy~ih----------v~~------~~-~~VNg~lv-pl~~~L~~-GD 809 (815)
++.+.|.|.+|+..+++ -++ .| ++|||+.+ .-.|++++ |.
T Consensus 19 v~~~~~~tvl~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~vnG~~~laC~t~v~~~g~ 77 (220)
T TIGR00384 19 VPADEGMTVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMNVNGKPVLACKTKVEDLGQ 77 (220)
T ss_pred EeCCCCCcHHHHHHHHHHhcCCCceeecccCCCCCCCCeeEECCEEhhhhhChHHHcCC
Confidence 35569999999999875 111 23 69999988 58888888 87
No 130
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=27.19 E-value=47 Score=37.51 Aligned_cols=24 Identities=38% Similarity=0.412 Sum_probs=21.4
Q ss_pred CCHHHHHHHhCCCCceEEECCEEe
Q 003497 776 STAADAAMKVGLEGKLVLVNGQLV 799 (815)
Q Consensus 776 sT~~DfAy~ihv~~~~~~VNg~lv 799 (815)
+||-|.+.+|-+|..++.||--++
T Consensus 259 g~~sda~~AmelGadgVL~nSaIa 282 (326)
T PRK11840 259 GTASDAAVAMELGCDGVLMNTAIA 282 (326)
T ss_pred CCHHHHHHHHHcCCCEEEEcceec
Confidence 689999999999999999998776
No 131
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.13 E-value=95 Score=29.30 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.7
Q ss_pred CeeEEeecccccCCCCeEEEcCCC
Q 003497 587 GRELLVAVSFGLAASEVVADRRPS 610 (815)
Q Consensus 587 Gr~~lVpLs~~L~~GD~VeI~ts~ 610 (815)
|| .|.++.+|+.||.|||.+.-
T Consensus 56 ~k--~~kl~~~l~dgDRVEIyRPL 77 (99)
T COG2914 56 SK--PVKLDDELHDGDRVEIYRPL 77 (99)
T ss_pred cc--ccCccccccCCCEEEEeccc
Confidence 67 89999999999999998764
No 132
>KOG3148 consensus Glucosamine-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=25.72 E-value=36 Score=35.67 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=16.7
Q ss_pred EEEcCCCC---eEeCCCCCCHHHHH
Q 003497 761 IVCWPNGE---IMRLRSGSTAADAA 782 (815)
Q Consensus 761 ~VftP~G~---i~~Lp~GsT~~DfA 782 (815)
.-|+|.|| +..||.||||+-.=
T Consensus 25 ~~f~p~~dkyf~lglptgstplg~y 49 (273)
T KOG3148|consen 25 NQFTPGGDKYFVLGLPTGSTPLGMY 49 (273)
T ss_pred hhcCCCCceEEEEecCCCCCchhHH
Confidence 34677775 57899999998753
No 133
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=25.56 E-value=2.3e+02 Score=24.26 Aligned_cols=56 Identities=13% Similarity=0.190 Sum_probs=39.9
Q ss_pred eEEEEcCCCCeE--eCCCCCCHHHHHHHhC----C--CC-c-eEEECCEEeC-----CCccCCCCCEEEEe
Q 003497 759 VVIVCWPNGEIM--RLRSGSTAADAAMKVG----L--EG-K-LVLVNGQLVL-----PNTELKDGDIVEVR 814 (815)
Q Consensus 759 ~v~VftP~G~i~--~Lp~GsT~~DfAy~ih----v--~~-~-~~~VNg~lvp-----l~~~L~~GD~VeI~ 814 (815)
.|+|-|+.|+.+ +++...|+.|+=..|. + .. . ....||+... -++.+++|+.|-++
T Consensus 2 ~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~ 72 (77)
T cd01805 2 KITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVM 72 (77)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEE
Confidence 478899999875 5677789999877774 4 22 1 2466888765 34678999988764
No 134
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=25.24 E-value=38 Score=29.61 Aligned_cols=23 Identities=39% Similarity=0.637 Sum_probs=12.9
Q ss_pred eEEECCEEeCC-CccCCCCCEEEE
Q 003497 791 LVLVNGQLVLP-NTELKDGDIVEV 813 (815)
Q Consensus 791 ~~~VNg~lvpl-~~~L~~GD~VeI 813 (815)
.|+|||....= ..+|++||+|++
T Consensus 34 ~V~VNGe~e~rrg~Kl~~GD~V~~ 57 (65)
T PF13275_consen 34 EVKVNGEVETRRGKKLRPGDVVEI 57 (65)
T ss_dssp HHEETTB----SS----SSEEEEE
T ss_pred ceEECCEEccccCCcCCCCCEEEE
Confidence 37999997654 568999999997
No 135
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=24.60 E-value=66 Score=28.89 Aligned_cols=27 Identities=37% Similarity=0.620 Sum_probs=20.2
Q ss_pred CCCceEEECCEEeCC-CccCCCCCEEEE
Q 003497 787 LEGKLVLVNGQLVLP-NTELKDGDIVEV 813 (815)
Q Consensus 787 v~~~~~~VNg~lvpl-~~~L~~GD~VeI 813 (815)
+....|+|||..-.= ..+|.+||+|+|
T Consensus 34 i~eg~V~vNGe~EtRRgkKlr~gd~V~i 61 (73)
T COG2501 34 IAEGEVKVNGEVETRRGKKLRDGDVVEI 61 (73)
T ss_pred HHCCeEEECCeeeeccCCEeecCCEEEE
Confidence 334568999986543 357999999997
No 136
>PRK11180 rluD 23S rRNA pseudouridine synthase D; Provisional
Probab=24.52 E-value=60 Score=36.16 Aligned_cols=28 Identities=29% Similarity=0.570 Sum_probs=23.1
Q ss_pred CCCceEEECCEEe-CCCccCCCCCEEEEe
Q 003497 787 LEGKLVLVNGQLV-LPNTELKDGDIVEVR 814 (815)
Q Consensus 787 v~~~~~~VNg~lv-pl~~~L~~GD~VeI~ 814 (815)
+....++|||+.+ ..++.|+.||+|+|.
T Consensus 40 I~~G~V~VNg~~v~~~~~~v~~gD~I~v~ 68 (325)
T PRK11180 40 ILDQRVLVNGKVINKPKEKVLGGEQVAID 68 (325)
T ss_pred HHCCCEEECCEEccCCCcCcCCCCEEEEe
Confidence 3344689999988 589999999999884
No 137
>PF05153 DUF706: Family of unknown function (DUF706) ; InterPro: IPR007828 Inositol oxygenase (1.13.99.1 from EC) is involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. It may be also involved in plant ascorbate biosynthesis [, ].; GO: 0005506 iron ion binding, 0050113 inositol oxygenase activity, 0019310 inositol catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 2HUO_A 3BXD_A 2IBN_A.
Probab=23.89 E-value=1e+02 Score=33.64 Aligned_cols=52 Identities=19% Similarity=0.322 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhcCCccccCcchhhhHHHHHHHHHHcCCCCCCChhHHH-HHhhhccc
Q 003497 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV-VAGILHDV 160 (815)
Q Consensus 104 l~kA~~fA~~aH~GQ~RksGePYI~HpL~VA~ILa~L~~~~g~~D~dtI-aAALLHDv 160 (815)
|.+|+++....-...-.....|-|.|.+++|+.+..-.+ +++-+ .+||+||+
T Consensus 41 i~eA~~~L~~LvDeSDPD~d~~~i~H~lQTAEaiR~d~~-----~~dW~~LtGLiHDL 93 (253)
T PF05153_consen 41 IWEALELLNTLVDESDPDTDLPQIQHALQTAEAIRRDHP-----DPDWMQLTGLIHDL 93 (253)
T ss_dssp HHHHHHHGGG---TT-TT--S-HHHHHHHHHHHHHHHST-----T-HHHHHHHHHTTG
T ss_pred HHHHHHHHHHhccCccCCCchhHHHHHHHHHHHHHHhCC-----Ccchhhheehhccc
Confidence 455665544443222223456889999999988876533 34544 79999996
No 138
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=23.40 E-value=88 Score=27.43 Aligned_cols=21 Identities=19% Similarity=-0.032 Sum_probs=19.2
Q ss_pred CCeeEEeecccccCCCCeEEEcC
Q 003497 586 GGRELLVAVSFGLAASEVVADRR 608 (815)
Q Consensus 586 nGr~~lVpLs~~L~~GD~VeI~t 608 (815)
||+ .++.++.|+.||.|.|+.
T Consensus 55 n~~--~v~~~~~l~dgDevai~P 75 (80)
T TIGR01682 55 NEE--YVTDDALLNEGDEVAFIP 75 (80)
T ss_pred CCE--EcCCCcCcCCCCEEEEeC
Confidence 789 899999999999999974
No 139
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=22.98 E-value=95 Score=27.49 Aligned_cols=21 Identities=24% Similarity=0.150 Sum_probs=19.1
Q ss_pred CCeeEEeecccccCCCCeEEEcC
Q 003497 586 GGRELLVAVSFGLAASEVVADRR 608 (815)
Q Consensus 586 nGr~~lVpLs~~L~~GD~VeI~t 608 (815)
|++ ++..++.|+.||.|.|+.
T Consensus 56 N~~--~~~~~~~l~dgDeVai~P 76 (81)
T PRK11130 56 NQT--LVSFDHPLTDGDEVAFFP 76 (81)
T ss_pred CCE--EcCCCCCCCCCCEEEEeC
Confidence 688 899999999999999974
No 140
>COG3400 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.98 E-value=87 Score=35.94 Aligned_cols=64 Identities=25% Similarity=0.270 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCceEEEEcCCCCeEe--CCCCCCHHHHHHH-hC-CCCceEEE-----CCEE--eCCCccCCCCCEEEEe
Q 003497 747 ANGNPDSVVPGEVVIVCWPNGEIMR--LRSGSTAADAAMK-VG-LEGKLVLV-----NGQL--VLPNTELKDGDIVEVR 814 (815)
Q Consensus 747 f~~~~k~~l~~~~v~VftP~G~i~~--Lp~GsT~~DfAy~-ih-v~~~~~~V-----Ng~l--vpl~~~L~~GD~VeI~ 814 (815)
|++-+. ++..--+++=-.+|+||+ +|.||- |||| |+ +.-+-.+| ||++ +..+-.|++||++-|.
T Consensus 132 F~~~Lp-~I~~tp~~iGLgkGEImEI~vp~gSi---faYrhi~sI~qk~~RIvl~YRN~klll~~~slvlqp~D~lLVv 206 (471)
T COG3400 132 FISRLP-NIPSTPREIGLGKGEIMEIDVPFGSI---FAYRHIGSIRQKEYRIVLLYRNDKLLLSTKSLVLQPRDILLVV 206 (471)
T ss_pred HHHhcC-CccccchhcccccceEEEEecCCCch---hhhhhhhhhhhheeEEEEEEECCEEEEeccceEecCCCEEEEe
No 141
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=22.74 E-value=74 Score=26.18 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=20.0
Q ss_pred CCCCceEEEEcCCCCeEeCCCCCC
Q 003497 754 VVPGEVVIVCWPNGEIMRLRSGST 777 (815)
Q Consensus 754 ~l~~~~v~VftP~G~i~~Lp~GsT 777 (815)
++..+.++|.||+|+.+.+|.-..
T Consensus 2 ei~~~~aiVlT~dGeF~~ik~~~~ 25 (56)
T PF12791_consen 2 EIKKKYAIVLTPDGEFIKIKRKPG 25 (56)
T ss_pred cCcCCEEEEEcCCCcEEEEeCCCC
Confidence 356788999999999999987655
No 142
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=22.22 E-value=90 Score=27.39 Aligned_cols=24 Identities=38% Similarity=0.588 Sum_probs=20.8
Q ss_pred eEEECCEEeC--CCccCCCCCEEEEe
Q 003497 791 LVLVNGQLVL--PNTELKDGDIVEVR 814 (815)
Q Consensus 791 ~~~VNg~lvp--l~~~L~~GD~VeI~ 814 (815)
++.|||+.++ -.+.|++||++.|-
T Consensus 67 g~~vn~~~~~~~~~~~l~~gd~i~ig 92 (102)
T cd00060 67 GTFVNGQRVSPGEPVRLRDGDVIRLG 92 (102)
T ss_pred CeEECCEECCCCCcEECCCCCEEEEC
Confidence 4799999999 68899999999873
No 143
>PF04753 Corona_NS2: Coronavirus non-structural protein NS2; InterPro: IPR006841 This is a family of Coronavirus nonstructural protein NS2. Phosphoamino acid analysis confirmed the phosphorylated nature of NS2 and identified serine and threonine as its phosphorylated amino acid residues []. It was also demonstrated that the ns2 gene product is not essential for Murine hepatitis virus replication in transformed murine cells [].
Probab=22.17 E-value=47 Score=31.23 Aligned_cols=12 Identities=50% Similarity=0.888 Sum_probs=10.2
Q ss_pred HHHHHHHHHhcC
Q 003497 257 AELEDLCFAVLQ 268 (815)
Q Consensus 257 ~ELEDLsF~~L~ 268 (815)
+||||+||+|-+
T Consensus 20 t~LED~CfkfNY 31 (109)
T PF04753_consen 20 TELEDFCFKFNY 31 (109)
T ss_pred chHHHHHHHhcc
Confidence 699999999755
No 144
>KOG1573 consensus Aldehyde reductase [General function prediction only]
Probab=21.95 E-value=1.5e+02 Score=30.63 Aligned_cols=33 Identities=21% Similarity=0.502 Sum_probs=17.9
Q ss_pred CcchhhhHHHHHHHHHHcCCCCCCChhH-HHHHhhhccc
Q 003497 123 GDPYLTHCIHTGRILAMLIPSSGKRAVD-TVVAGILHDV 160 (815)
Q Consensus 123 GePYI~HpL~VA~ILa~L~~~~g~~D~d-tIaAALLHDv 160 (815)
.+|-|.|.++.|+-+..-..+ .+ .=.+||+||+
T Consensus 94 Depni~Ha~QtAE~iR~~~Pd-----~dWlHLtaLiHDL 127 (204)
T KOG1573|consen 94 DEPNIQHALQTAEAIRKDYPD-----EDWLHLTALIHDL 127 (204)
T ss_pred chHHHHHHHHHHHHHHHhCCC-----ccHHHHHHHHHHH
Confidence 456666766666655544332 22 2256666664
No 145
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=21.33 E-value=68 Score=30.42 Aligned_cols=31 Identities=13% Similarity=0.191 Sum_probs=24.2
Q ss_pred eeEEEEEEEccCCeeEEeecccccCCCCeEEEcCCC
Q 003497 575 LLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPS 610 (815)
Q Consensus 575 c~gAkV~~v~~nGr~~lVpLs~~L~~GD~VeI~ts~ 610 (815)
|-+++| .| ||. .+--|+.++.||+++|....
T Consensus 31 ~~~GrV-~v--NG~--~aKpS~~VK~GD~l~i~~~~ 61 (100)
T COG1188 31 IEGGRV-KV--NGQ--RAKPSKEVKVGDILTIRFGN 61 (100)
T ss_pred HHCCeE-EE--CCE--EcccccccCCCCEEEEEeCC
Confidence 556665 56 578 78899999999999996443
No 146
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=21.00 E-value=1.3e+02 Score=33.79 Aligned_cols=39 Identities=15% Similarity=0.317 Sum_probs=28.7
Q ss_pred eEeCCCCCCHHHHHHHhC--CC--------C------ce-EEECCEEeCC-CccCCC
Q 003497 769 IMRLRSGSTAADAAMKVG--LE--------G------KL-VLVNGQLVLP-NTELKD 807 (815)
Q Consensus 769 i~~Lp~GsT~~DfAy~ih--v~--------~------~~-~~VNg~lvpl-~~~L~~ 807 (815)
-+..+.|.|.+|++.+|+ +. + .| ++|||+.+.- .|.+.+
T Consensus 22 ~v~~~~~~tvL~~l~~i~~~~d~tL~~~~~c~~~~Cg~C~v~inG~~~laC~t~v~~ 78 (329)
T PRK12577 22 TLEVEPGNTILDCLNRIKWEQDGSLAFRKNCRNTICGSCAMRINGRSALACKENVGS 78 (329)
T ss_pred EEECCCCChHHHHHHHhCCcCCCCcEEcCCCCCCCCCCCEEEECCeeecCcccchhh
Confidence 356789999999999996 42 2 13 6999998763 666654
No 147
>COG1896 Predicted hydrolases of HD superfamily [General function prediction only]
Probab=20.67 E-value=6e+02 Score=26.55 Aligned_cols=43 Identities=12% Similarity=0.252 Sum_probs=26.4
Q ss_pred ccCcchhhhHHHHHHHH---HHcCCCCC--CChhHHHHHhhhcccccc
Q 003497 121 KTGDPYLTHCIHTGRIL---AMLIPSSG--KRAVDTVVAGILHDVVDD 163 (815)
Q Consensus 121 ksGePYI~HpL~VA~IL---a~L~~~~g--~~D~dtIaAALLHDvVED 163 (815)
..++.-..|-+.||.+- +......| ......+..||+||..|-
T Consensus 29 ~~~eSvaeHs~~va~la~~la~~~~~~~~~vn~~k~~~~AL~HD~~E~ 76 (193)
T COG1896 29 WNPESVAEHSFRVAILALLLADILNAKGGEVNPEKVALMALVHDLPEA 76 (193)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHhcccHHH
Confidence 35677778877776542 22111011 123458899999999995
No 148
>PRK05910 type III secretion system protein; Validated
Probab=20.04 E-value=92 Score=37.84 Aligned_cols=77 Identities=12% Similarity=0.061 Sum_probs=58.8
Q ss_pred ccCcccHHHHHHHHHhhHhhhcCCCchHHHHHHhhhhhHhhhhhhhChHHHHHHHHHH---HHHhcChHHHHHHHHHHhh
Q 003497 205 NQGTLGHEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL---CFAVLQPQIFRKMRADLAS 281 (815)
Q Consensus 205 rk~~ls~vKLADRLhNMRTL~~lp~ekq~~iA~ETl~IYAPLA~RLGi~~iK~ELEDL---sF~~L~P~~Y~~i~~~l~~ 281 (815)
|++...++-|||.-...+....+.+.-|+++++---.-|++-.+.|-.+.+..++|+. +.+-|.|+..+++-+.+.+
T Consensus 444 Rdl~tIlEaLad~~~~tkd~~~LtE~VR~~L~r~I~~~~~~~~g~L~vitL~p~~E~~l~~si~~L~P~~~~~li~~v~~ 523 (584)
T PRK05910 444 HLFPKILEAIAVYGSQGKSSEELVEKVRKYLGKQIGRSLWNRQDTLEVITIDSHVEQFIRDSYSKSNPDMNEKVVAQVKS 523 (584)
T ss_pred ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEEeCHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3444445568888877777777777778888887777777766668889999999987 4445789999999988876
Done!