Query 003497
Match_columns 815
No_of_seqs 468 out of 2472
Neff 5.1
Searched_HMMs 29240
Date Tue Mar 26 19:00:14 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003497.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1544-1548//hhsearch_pdb/003497hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vj7_A Bifunctional RELA/SPOT; 1.0 1 1 741.5 31.3 347 98-548 22-383 (393)
2 3l9d_A SMU.1046C, putative GTP 1.0 1 1 325.8 13.1 168 240-519 18-196 (255)
3 2be3_A GTP pyrophosphokinase; 1.0 1 1 290.2 9.4 154 397-559 43-216 (226)
4 3nqw_A CG11900; stringent resp 1.0 1 1 229.6 15.9 164 99-266 4-176 (179)
5 3nr1_A HD domain-containing pr 1.0 1 1 224.0 15.5 143 100-246 3-156 (178)
6 3hvz_A Uncharacterized protein 1.0 1 1 141.7 5.7 63 753-815 1-67 (78)
7 2eki_A DRG 1, developmentally- 1.0 1 1 94.2 6.8 58 758-815 10-86 (93)
8 1wxq_A GTP-binding protein; st 1.0 1 1 91.5 3.6 58 758-815 318-394 (397)
9 3hvz_A Uncharacterized protein 1.0 1 1 81.4 2.1 53 552-611 8-70 (78)
10 2kmm_A Guanosine-3',5'-BIS(dip 1.0 1 1 79.6 5.7 57 759-815 2-62 (73)
No 1
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8
Probab=1.00 E-value=1 Score=741.54 Aligned_cols=347 Identities=37% Similarity=0.573 Sum_probs=305.2
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCH
Q ss_conf 99899999999999995048966669643145999999999818999999067978863001212345797788847419
Q 003497 98 IFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGD 177 (815)
Q Consensus 98 ~~~~~~I~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILA~L~~~~g~~D~etIaAALLHDvVEDT~~T~EeI~e~FG~ 177 (815)
..+.+.+.+|+.||..+|.||+|++|+||+.||++||.||+++++ |.++++||||||++|||++|.++|++.||+
T Consensus 22 ~~~~~~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~-----D~~~i~AALLHDvvEDt~~t~e~I~~~FG~ 96 (393)
T 1vj7_A 22 ETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHL-----DAVTVACGFLHDVVEDTDITLDNIEFDFGK 96 (393)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTC-----CHHHHHHHHHTTHHHHSSCCHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHCCCCCHHHHHHHHCH
T ss_conf 988999999999999984467587899678889999999988559-----999999998011895079999999988588
Q ss_pred HHHHHHHHHHHCHHHHHHHH-HHHHHHHCCCCCC--------HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999997510001279999-9998741048200--------88899899823754308980289999730134855552
Q 003497 178 EVAKLVAGVSRLSYINQLLR-RHRRINVNQGTLG--------HEELADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 248 (815)
Q Consensus 178 eVA~LV~gVTKl~~i~~~~~-~~~~e~~rk~~Ls--------~vKLADRLhNMRtL~~l~~ekq~~iA~ETl~IYAPLA~ 248 (815)
+|+.||+||||++.+++..+ ..+.+++|+|+++ ++||||||||||++..+|+++|+++|+||++|||||||
T Consensus 97 ~Va~lV~gvTk~~~~~~~~~~~~qae~~Rkmllam~~D~RvvlIKLADRlhNmRtl~~~~~ek~~~iA~Etl~iyaPLA~ 176 (393)
T 1vj7_A 97 DVRDIVDGVTKLGKVEYKSHEEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAH 176 (393)
T ss_dssp HHHHHHHHHHHHC--------------CCSCTTTSCCCHHHHHHHHHHHHHHHHTCC------HHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999873434783317899999999999850578505611098888761864328948899999999999999874
Q ss_pred HHCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 20907899999999998209689999999986014998656654431112489997667668887643101335447776
Q 003497 249 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDL 328 (815)
Q Consensus 249 RLGi~~iK~ELEDLsF~~L~P~~Y~~i~~~l~~~w~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l 328 (815)
|||||++|||||||||+||+|+.|+.|.+.|.+
T Consensus 177 rLGi~~ik~ELEdl~f~~l~p~~y~~i~~~l~~----------------------------------------------- 209 (393)
T 1vj7_A 177 RLGISRIKWELEDLAFRYLNETEFYKISHMMNE----------------------------------------------- 209 (393)
T ss_dssp HTTCHHHHHHHHHHHHHHHCHHHHHHHHHHHHH-----------------------------------------------
T ss_pred HCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-----------------------------------------------
T ss_conf 037248999999988335446689999999999-----------------------------------------------
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCHHH
Q ss_conf 53116531123468778999997554677777789886556554357999999999832038889832799883059568
Q 003497 329 LEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYS 408 (815)
Q Consensus 329 l~~v~~fd~~~~r~~r~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~~~~~~~~~~gi~~~I~gR~K~~yS 408 (815)
.|.+|+.+++.+.. .+++.|.+ .|+.+.|+||+|++||
T Consensus 210 -----------~r~~r~~~i~~i~~----------------------~l~~~L~~---------~gi~~~v~~R~K~~~S 247 (393)
T 1vj7_A 210 -----------KRREREALVDDIVT----------------------KIKSYTTE---------QGLFGDVYGRPKHIYS 247 (393)
T ss_dssp -----------THHHHHHHHHHHHH----------------------HHHHHHHT---------TTCCCEEEECCCCHHH
T ss_pred -----------HHHHHHHHHHHHHH----------------------HHHHHHHH---------CCCCEEEEEEECCHHH
T ss_conf -----------99889999999999----------------------99999986---------2984179988588089
Q ss_pred HHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 99998823999874344224899982899988986288999999999712876556545443599988975069999938
Q 003497 409 IFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGP 488 (815)
Q Consensus 409 I~~Kl~rk~~~~~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~ilgiIh~~~~pip~r~kDYIa~PK~nGYqSLHt~V~~p 488 (815)
||+||+||+.+|++|+|+.|+||||++ +.|||.++|+||+.|+|+|++|||||++||+||||||||+|.+|
T Consensus 248 i~~Km~rk~~~~~~i~Di~giRIi~~~---------~~dcy~vl~~i~~~~~~~~~~~kDyIa~PK~nGYqSlH~~v~~p 318 (393)
T 1vj7_A 248 IYRKMRDKKKRFDQIFDLIAIRCVMET---------QSDVYAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGP 318 (393)
T ss_dssp HHHHHHHHGGGCCTTGGGCEEEEEESS---------HHHHHHHHHHHHHHSCBCTTCCEETTTSCCTTCCCCEEEEEECS
T ss_pred HHHHHHHHCCCHHHHCCCCEEEEEECC---------HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEC
T ss_conf 999998739985452463138999788---------99999999999962887877444634388767864157999807
Q ss_pred CCCEEEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCC------CCCHHHHHCCCCCCCCCCC
Q ss_conf 99279999860302668875555633023369865553211------3004997111799987777
Q 003497 489 DGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSM------DESDIEASSSLSKDTDDHN 548 (815)
Q Consensus 489 ~g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~~~~~~~~~~~~------~~~l~~~~~~~~~~~e~~~ 548 (815)
.| ++||||||..||.|||+||||||+||++.........+ -+++.+|++...++.||+-
T Consensus 319 ~~-~vEIQIRT~~mh~~Ae~g~aah~~YK~~~~~~~~~~~~~~~~~wl~~ll~~~~~~~~~~ef~~ 383 (393)
T 1vj7_A 319 KG-PIEIQIRTKEMHQVAEYGVAAHWAYKKGVRGKVNQAEQKVGMNWIKELVELQDASNGDAVDFV 383 (393)
T ss_dssp SS-EEEEEEEEHHHHHHHHHTTCC---------------------CHHHHHHHC------------
T ss_pred CC-EEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 96-489999659999998753898850256887665415567999999999998754799188888
No 2
>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans}
Probab=1.00 E-value=1 Score=325.85 Aligned_cols=168 Identities=23% Similarity=0.248 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 13485555220907899999999998209689999999986014998656654431112489997667668887643101
Q 003497 240 LLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFD 319 (815)
Q Consensus 240 l~IYAPLA~RLGi~~iK~ELEDLsF~~L~P~~Y~~i~~~l~~~w~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (815)
-.|||||||||||..+|.|+|++.+.|.+ .+..+..+|..
T Consensus 18 ~~i~apla~~lg~~~~~~~~~~~~~~Y~~--a~~el~~kl~~-------------------------------------- 57 (255)
T 3l9d_A 18 GSHMASMTGGQQMGRGSMNWEEFLDPYIQ--AVGELKIKFRG-------------------------------------- 57 (255)
T ss_dssp -----------------CCHHHHTHHHHH--HHHHHHHHHHH--------------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH--------------------------------------
T ss_conf 51017555275489999999999999999--99999999999--------------------------------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 33544777653116531123468778999997554677777789886556554357999999999832038889832799
Q 003497 320 EHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTL 399 (815)
Q Consensus 320 ~~~~~~k~ll~~v~~fd~~~~r~~r~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~~~~~~~~~~gi~~~I 399 (815)
|..++.....+.+. . .|
T Consensus 58 -------------------------------------------------------------l~~e~~~~~~~~~i-~-~V 74 (255)
T 3l9d_A 58 -------------------------------------------------------------IRKQFRKQKRHSPI-E-FV 74 (255)
T ss_dssp -------------------------------------------------------------HHHHHHHTTSCCSC-C-EE
T ss_pred -------------------------------------------------------------HHHHHHHHHCCCCC-C-EE
T ss_conf -------------------------------------------------------------99999986156984-0-37
Q ss_pred EEEECCHHHHHHHHHHCCCCCC----CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 8830595689999882399987----434422489998289998898628899999999971287655654544359998
Q 003497 400 SSRLKSLYSIFSKMRRKDVGIH----KVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKP 475 (815)
Q Consensus 400 ~gR~K~~ySI~~Kl~rk~~~~~----eI~Dl~giRIIv~~~~~~~~~~~~~dCY~ilgiIh~~~~pip~r~kDYIa~PK~ 475 (815)
++|+|+++||++||.|++.+++ +|+|++|+||||.. ++|||+++++||+.|.|.+.++||||++||+
T Consensus 75 ~~RvKs~~SI~~Km~Rk~~~~~~~~~~I~Di~GiRII~~~---------~~D~y~v~~~I~~~~~~~~~~~KDYIa~PK~ 145 (255)
T 3l9d_A 75 TGRVKPIESIKEKMVLRGIKKENLTQDMQDIAGLRIMVQF---------VDDVNDVLELLRQRKDMKVIQERDYINNLKP 145 (255)
T ss_dssp EEEECCHHHHHHHHHHHTCCGGGHHHHCSCSEEEEEEESS---------TTHHHHHHHHHHTCSSSEEEEEEEESCC-CC
T ss_pred EEEECCHHHHHHHHHHCCCCCCCHHHHCCCCCEEEEEEEC---------HHHHHHHHHHHHHCCCCCEEEEECCCCCCCC
T ss_conf 8687589999999985188832043103321068999947---------8999999999974578754210021107787
Q ss_pred CCCCEEEEEEE-------CCCCCEEEEEEEECHHHHHHHHHHHHHHHCCCC
Q ss_conf 89750699999-------389927999986030266887555563302336
Q 003497 476 SGYQSLHTAVQ-------GPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET 519 (815)
Q Consensus 476 nGYqSLHt~V~-------~p~g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~~ 519 (815)
|||||||++|. ++.+.++||||||..||.|||+||+++|+|+..
T Consensus 146 nGYrSlH~iv~~p~~~~~g~~~~~vEIQIRT~~Mh~WAeieH~~~YK~~~~ 196 (255)
T 3l9d_A 146 SGYRSYHVIVEYPVDTISGQRIIMAEIQIRTLAMNFWATIEHSLNYKYHGE 196 (255)
T ss_dssp CSCCEEEEEEEEEEEETTEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEEEEECCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCC
T ss_conf 882268999972543356888669999978789999999889986288899
No 3
>2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8
Probab=1.00 E-value=1 Score=290.23 Aligned_cols=154 Identities=26% Similarity=0.309 Sum_probs=128.7
Q ss_pred EEEEEEECCHHHHHHHHHHCCCCCC----CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 7998830595689999882399987----434422489998289998898628899999999971287655654544359
Q 003497 397 VTLSSRLKSLYSIFSKMRRKDVGIH----KVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVN 472 (815)
Q Consensus 397 ~~I~gR~K~~ySI~~Kl~rk~~~~~----eI~Dl~giRIIv~~~~~~~~~~~~~dCY~ilgiIh~~~~pip~r~kDYIa~ 472 (815)
..|++|+|+++||++||.|++.+++ +|+|+.|+||||.. ++|||.++++||+.|.+.|.++||||++
T Consensus 43 ~~v~~RvK~~~Si~~K~~rk~~~~~~~~~~i~Di~GiRIi~~~---------~~d~y~v~~~i~~~~~~~~~~~kDyI~~ 113 (226)
T 2be3_A 43 EFVTGRVKPIESIKEKMARRGITYATLEHDLQDIAGLRVMVQF---------VDDVKEVVDILHKRQDMRIIQERDYITH 113 (226)
T ss_dssp EEEEEEECCHHHHHHHHHHHTCCTTTHHHHCTTSEEEEEEESC---------GGGHHHHHHHHHTCSSEEEEEEEETTTT
T ss_pred CEEEEECCCHHHHHHHHHHHCCCCCCCHHHCCCCCEEEEEECC---------HHHHHHHHHHHHHCCCCCEEEECCHHHC
T ss_conf 1587347998999999996389865412002220258999747---------8889999999986468851200353226
Q ss_pred CCCCCCCEEEEEEE-------CCCCCEEEEEEEECHHHHHHHHHHHHHHHCCCCCCCC--CC-------CCCCCCCHHHH
Q ss_conf 99889750699999-------3899279999860302668875555633023369865--55-------32113004997
Q 003497 473 PKPSGYQSLHTAVQ-------GPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKL--QS-------ISSMDESDIEA 536 (815)
Q Consensus 473 PK~nGYqSLHt~V~-------~p~g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~~~~~~--~~-------~~~~~~~l~~~ 536 (815)
||+|||||||++|. ++.|.++||||||..||.|||+||++||+||++.... .. ...+++++.++
T Consensus 114 PK~nGYrSlH~~v~~p~~~~~g~~~~~vEIQIRT~~m~~wAe~eh~~~YK~~~~~~~~~~~~l~~~a~~~~~~d~~m~~i 193 (226)
T 2be3_A 114 RKASGYRSYHVVVEYTVDTINGAKTILAEIQIRTLAMNFWATIEHSLNYKYQGDFPDEIKKRLEITARIAHQLDEEMGEI 193 (226)
T ss_dssp CCTTSCCCEEEEEEEEECCTTCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78788448999997463114688883799999608889999886998747768996899999999999999999999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11179998777753212234455
Q 003497 537 SSSLSKDTDDHNPLDTDLFQKYS 559 (815)
Q Consensus 537 ~~~~~~~~e~~~~~k~dvftpkg 559 (815)
+....++.+|++.++.++|...+
T Consensus 194 ~~~i~~~~~~~~~~~~~~~~~~~ 216 (226)
T 2be3_A 194 RDDIQEAQALFDPLSRKLNDGVG 216 (226)
T ss_dssp HHHHHHHHHHCCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99876368888886688762146
No 4
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=229.55 Aligned_cols=164 Identities=23% Similarity=0.323 Sum_probs=132.1
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCC--CCCCHHHHHHHHHHHHH-HCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 98999999999999950489666--69643145999999999-8189999990679788630012123457977888474
Q 003497 99 FNDEQVQKAIAFAKRAHHGQFRK--TGDPYLTHCIHTGRILA-MLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEF 175 (815)
Q Consensus 99 ~~~~~I~kA~~~A~~aH~GQ~Rk--sGePYI~Hpl~VA~ILA-~L~~~~g~~D~etIaAALLHDvVEDT~~T~EeI~e~F 175 (815)
.+.+.+.+|+.||..+|.||+|+ +|+|||.||++||.||+ ++++ .|.++++||||||++|||.+|.++|++.|
T Consensus 4 ~d~~~l~~A~~~A~~~H~gQ~rk~~~G~pyi~Hpl~VA~ila~~l~~----~D~~~i~AAlLHDvvEDt~~t~e~i~~~F 79 (179)
T 3nqw_A 4 YPSAKFMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACI----TDEGVLMAALLHDVVEDTDASFEDVEKLF 79 (179)
T ss_dssp CCCHHHHHHHHHHHHHSTTCBCSSSSCCBTHHHHHHHHHHHHTTTCC----CCHHHHHHHHTTTHHHHSSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 33999999999999972068687889986899999999999987399----99999999992407840799999999987
Q ss_pred CHHHHHHHHHHHHCHHHHHHHHH-HHHHHHCC--CCCCHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHHHHHHH-
Q ss_conf 19999999975100012799999-99874104--82008889989982375430898028-999973013485555220-
Q 003497 176 GDEVAKLVAGVSRLSYINQLLRR-HRRINVNQ--GTLGHEELADRLHNMRTIYALPPAKA-RAVAQETLLIWCSLASRL- 250 (815)
Q Consensus 176 G~eVA~LV~gVTKl~~i~~~~~~-~~~e~~rk--~~Ls~vKLADRLhNMRtL~~l~~ekq-~~iA~ETl~IYAPLA~RL- 250 (815)
|++|+.||+||||++.+++..+. .+.+++++ .++.++|||||+||||++...+++++ ..-+++....+.+++..|
T Consensus 80 G~~Va~lV~gvtk~~~~~~~~~~~~q~e~~r~~d~rvvlIKLADRl~NmR~l~~~~~~~~~~~r~~~Y~~~~~~v~~~l~ 159 (179)
T 3nqw_A 80 GPDVCGLVREVTDDKSLEKQERKRLQIENAAKSSCRAKLIKLADKLDNLRDLQVNTPTGWTQERRDQYFVWAKKVVDNLR 159 (179)
T ss_dssp CHHHHHHHHHTCCCTTSCHHHHHHHHHHSSTTSCHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999844455788799999999885787999999999998899875379332469999999999999999872
Q ss_pred -CHHHHHHHHHHHHHHH
Q ss_conf -9078999999999982
Q 003497 251 -GLWALKAELEDLCFAV 266 (815)
Q Consensus 251 -Gi~~iK~ELEDLsF~~ 266 (815)
+--.+..+|.++.=+|
T Consensus 160 ~~n~~l~~~~~~~~~~~ 176 (179)
T 3nqw_A 160 GTNANLELKLDEIFRQR 176 (179)
T ss_dssp TSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC
T ss_conf 59999999999999972
No 5
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=223.97 Aligned_cols=143 Identities=29% Similarity=0.363 Sum_probs=115.4
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCC--CCCHHHHHHHHHHHHH-HCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHC
Q ss_conf 89999999999999504896666--9643145999999999-81899999906797886300121234579778884741
Q 003497 100 NDEQVQKAIAFAKRAHHGQFRKT--GDPYLTHCIHTGRILA-MLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFG 176 (815)
Q Consensus 100 ~~~~I~kA~~~A~~aH~GQ~Rks--GePYI~Hpl~VA~ILA-~L~~~~g~~D~etIaAALLHDvVEDT~~T~EeI~e~FG 176 (815)
+..++.+|+.||..+|.||+|++ |+|||.||++||.||+ ++++ .|.++++||||||++|||++|.++|++.||
T Consensus 3 d~~~l~~A~~~A~~aH~gQ~rk~~~G~PYi~Hpl~VA~il~~~~~~----~d~~~i~AALLHDvvEDt~~t~e~i~~~FG 78 (178)
T 3nr1_A 3 EAAQLLEAADFAARKHRQQRRKDPEGTPYINHPIGVARILTHEAGI----TDIVVLQAALLHDTVEDTDTTLDEVELHFG 78 (178)
T ss_dssp HHHHHHHHHHHHHHHTTTCBCSSTTCCBTTHHHHHHHHHHHHTSCC----CCHHHHHHHHHTTHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHHHHCCCCCHHHHHHHHC
T ss_conf 7999999999999971357688999996899999999999987289----989999999922088528999999999979
Q ss_pred HHHHHHHHHHHHCHHHHHHHHH-HHHHHHC--CCCCCHHHHHHHHHHHHHHHCCCCCHH-----HHHHHHHHHHHHHH
Q ss_conf 9999999975100012799999-9987410--482008889989982375430898028-----99997301348555
Q 003497 177 DEVAKLVAGVSRLSYINQLLRR-HRRINVN--QGTLGHEELADRLHNMRTIYALPPAKA-----RAVAQETLLIWCSL 246 (815)
Q Consensus 177 ~eVA~LV~gVTKl~~i~~~~~~-~~~e~~r--k~~Ls~vKLADRLhNMRtL~~l~~ekq-----~~iA~ETl~IYAPL 246 (815)
++|+.||+||||++.+++..+. .+.++++ ..++.++|||||+||||++..++++.+ ++|.+|...|..-|
T Consensus 79 ~~Va~lV~gvTk~~~~~~~~~~~~q~e~~~~~d~rvvlIKLADRl~NmR~l~~~~~~~~~~~r~~~Y~~~~~~v~~~l 156 (178)
T 3nr1_A 79 AQVRRLVEEVTDDKTLPKLERKRLQVEQAPHSSPGAKLVKLADKLYNLRDLNRCTPEGWSEHRVQEYFEWAAQVVKGL 156 (178)
T ss_dssp HHHHHHHHHTCCCTTSCHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHCCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999999999982554466557999999987379266998999999889886537930147999999999999999986
No 6
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=1.00 E-value=1 Score=141.66 Aligned_cols=63 Identities=29% Similarity=0.472 Sum_probs=58.9
Q ss_pred CCCCCCEEEEECCCCCEEECCCCCCHHHHHHHHC--CCCCE--EEECCEEECCCCCCCCCCEEEEEC
Q ss_conf 8999966999857998475799997977899837--78826--898797708976689998899839
Q 003497 753 SVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVG--LEGKL--VLVNGQLVLPNTELKDGDIVEVRV 815 (815)
Q Consensus 753 ~~l~~~~v~VftPkG~i~~Lp~GsT~~DfAy~ih--i~~~~--~~VNg~lvpl~~~L~~GD~VeI~t 815 (815)
.|||+++||||||+|+++.||.||||+||||+|| ++.+| ++|||++|+|+|+|++||+|||+|
T Consensus 1 ~~l~~~~i~v~tP~G~~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkVNG~~v~L~~~L~~gd~VeIit 67 (78)
T 3hvz_A 1 MDLAPEEVFVFTPKGDVISLPIGSTVIDFAYAIHSAVGNRMIGAKVDGRIVPIDYKVKTGEIIDVLT 67 (78)
T ss_dssp -----CEEEEECTTSCEEEEETTCBHHHHHHHHCHHHHHTEEEEEETTEEECTTCBCCTTCBEEEEE
T ss_pred CCCCCCEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHCCEEEEEECCEECCCCCCCCCCCEEEEEC
T ss_conf 9876760799889999899059998999999865532141699999999958983369999999982
No 7
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=94.19 Aligned_cols=58 Identities=29% Similarity=0.412 Sum_probs=50.8
Q ss_pred CEEEEEC-CCCCE------EEC-CCCCCHHHHHHHHC--CCCCE--EE-------ECCEEECCCCCCCCCCEEEEEC
Q ss_conf 6699985-79984------757-99997977899837--78826--89-------8797708976689998899839
Q 003497 758 EVVIVCW-PNGEI------MRL-RSGSTAADAAMKVG--LEGKL--VL-------VNGQLVLPNTELKDGDIVEVRV 815 (815)
Q Consensus 758 ~~v~Vft-PkG~i------~~L-p~GsT~~DfAy~ih--i~~~~--~~-------VNg~lvpl~~~L~~GD~VeI~t 815 (815)
+-|.||| |+|.. +-| |.|||+.||||+|| ++..+ |. +|||.|+++|+|+|||+|+|.+
T Consensus 10 ~lIrVYtk~~G~~pd~~dpviL~~~GsTv~Dfa~~IH~di~~~fkyA~VwG~saK~~~qrVgldh~L~d~DVV~Iv~ 86 (93)
T 2eki_A 10 KLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIVK 86 (93)
T ss_dssp CEEEEEECCTTSCCCSSSCEEEETTSCCHHHHHHHHCTTCTTTEEEEEEBSTTSSSSSEEECSSCCCCSSEEECEEE
T ss_pred CEEEEEECCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCEECCCCCEECCCCEEEEEE
T ss_conf 91999758999977889988983699999999999999998406378995345339998989986826899999996
No 8
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=1.00 E-value=1 Score=91.48 Aligned_cols=58 Identities=28% Similarity=0.304 Sum_probs=52.3
Q ss_pred CEEEEEC---------CCC----CEEECCCCCCHHHHHHHHC--CCCCE--E--EECCEEECCCCCCCCCCEEEEEC
Q ss_conf 6699985---------799----8475799997977899837--78826--8--98797708976689998899839
Q 003497 758 EVVIVCW---------PNG----EIMRLRSGSTAADAAMKVG--LEGKL--V--LVNGQLVLPNTELKDGDIVEVRV 815 (815)
Q Consensus 758 ~~v~Vft---------PkG----~i~~Lp~GsT~~DfAy~ih--i~~~~--~--~VNg~lvpl~~~L~~GD~VeI~t 815 (815)
.-++||| |+| +.+.||.|||+.||||+|| ++..+ | .+||+.|+++|+|+|||+|+|+|
T Consensus 318 ~li~vft~~~~~~~~~~~g~~~~~~~~l~~G~t~~d~a~~iH~d~~~~f~~a~~~~~~~~~g~~~~l~dgDvv~i~~ 394 (397)
T 1wxq_A 318 KLIPVYPVHDENKLTDQFGNVLPHVFLMKKGSTPRDLAFKVHTDLGKGFLYAINARTKRRVGEDYELQFNDIVKIVS 394 (397)
T ss_dssp CEEEEEEESCC-----CCSCSSCCCEEEETTCCHHHHHHHHCHHHHHTEEEEEETTTCSBCCTTCCCCTTEEEEEEE
T ss_pred CCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCEEEEEE
T ss_conf 97589850665545677676345048958989899998877699986413267831998758974516998899996
No 9
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=1.00 E-value=1 Score=81.36 Aligned_cols=53 Identities=21% Similarity=0.418 Sum_probs=47.5
Q ss_pred CCCCCCCCC---CCCCCCEEEE-------CCCEEEEEEEEEECCCCEEEEEECCCCCCCCCEEEECCCCC
Q ss_conf 122344555---4589830354-------28805577998870598158763521368988389728998
Q 003497 552 TDLFQKYSS---LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSF 611 (815)
Q Consensus 552 ~dvftpkg~---lp~G~tv~~~-------iG~~c~gAkV~~v~~nGr~~lVpl~~~L~~GD~VeI~ts~~ 611 (815)
.-+|||+|+ +|.|+|+.++ +|++|+||+| ||+ +|+|+++|++||+|||+|+++
T Consensus 8 i~v~tP~G~~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkV-----NG~--~v~L~~~L~~gd~VeIit~~~ 70 (78)
T 3hvz_A 8 VFVFTPKGDVISLPIGSTVIDFAYAIHSAVGNRMIGAKV-----DGR--IVPIDYKVKTGEIIDVLTTKE 70 (78)
T ss_dssp EEEECTTSCEEEEETTCBHHHHHHHHCHHHHHTEEEEEE-----TTE--EECTTCBCCTTCBEEEEECC-
T ss_pred EEEECCCCCEEEECCCCCHHHHHHHHHHHHHCCEEEEEE-----CCE--ECCCCCCCCCCCEEEEECCCC
T ss_conf 799889999899059998999999865532141699999-----999--958983369999999982675
No 10
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=1.00 E-value=1 Score=79.56 Aligned_cols=57 Identities=42% Similarity=0.459 Sum_probs=51.0
Q ss_pred EEEEECCCCCEEECCCCCCHHHHHHHHC--CCCCE--EEECCEEECCCCCCCCCCEEEEEC
Q ss_conf 6999857998475799997977899837--78826--898797708976689998899839
Q 003497 759 VVIVCWPNGEIMRLRSGSTAADAAMKVG--LEGKL--VLVNGQLVLPNTELKDGDIVEVRV 815 (815)
Q Consensus 759 ~v~VftPkG~i~~Lp~GsT~~DfAy~ih--i~~~~--~~VNg~lvpl~~~L~~GD~VeI~t 815 (815)
.+.|+.|+|+.+++|.|+|+.|+|+.++ ++..+ ++|||++++++++|++||.|||+|
T Consensus 2 ~i~i~~p~g~~~~~~~g~T~~dla~~i~~~l~~~~vaa~vNg~lvdl~~~L~~~~~Veivt 62 (73)
T 2kmm_A 2 EVMVFTPKGEIKRLPQGATALDFAYSLHSDLGDHCIGAKVNHKLVPLSYVLNSGDQVEVLS 62 (73)
T ss_dssp CEEEECTTCCEEEECTTCBHHHHHHHHCSHHHHTEEEEEETTEECCTTCBCCSSSBEEEEE
T ss_pred EEEEECCCCCEEECCCCCCHHHHHHHHHHCCCCCEEEEEECCEEECCCCCCCCCCEEEEEE
T ss_conf 6999938999899079996999999870404225699999999908976939989999997
Done!