Query 003498
Match_columns 815
No_of_seqs 371 out of 1565
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 00:34:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003498.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003498hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 2E-233 4E-238 2014.5 73.4 804 8-815 5-810 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 3E-177 7E-182 1488.4 43.1 630 30-742 17-649 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 4.2E-91 9.2E-96 759.4 19.8 297 39-344 1-318 (319)
4 COG1874 LacA Beta-galactosidas 100.0 5.3E-37 1.1E-41 356.8 13.4 290 33-331 1-333 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.8 1.4E-18 3.1E-23 194.0 14.7 263 55-347 3-373 (374)
6 PF02836 Glyco_hydro_2_C: Glyc 99.2 6.8E-10 1.5E-14 120.5 17.1 193 33-266 1-213 (298)
7 PRK10150 beta-D-glucuronidase; 98.9 8E-08 1.7E-12 114.3 23.8 159 31-224 276-448 (604)
8 PF13364 BetaGal_dom4_5: Beta- 98.9 3.4E-09 7.4E-14 99.4 7.1 69 621-715 33-104 (111)
9 PF13364 BetaGal_dom4_5: Beta- 98.8 1.6E-08 3.4E-13 95.0 9.2 84 463-553 24-110 (111)
10 PF00150 Cellulase: Cellulase 98.8 1.1E-07 2.3E-12 100.8 15.1 160 43-224 4-171 (281)
11 PRK10340 ebgA cryptic beta-D-g 98.7 4.1E-07 8.9E-12 114.0 17.9 187 31-260 318-514 (1021)
12 PRK09525 lacZ beta-D-galactosi 98.7 5.1E-07 1.1E-11 113.1 18.2 148 32-224 335-488 (1027)
13 COG3250 LacZ Beta-galactosidas 98.5 1.4E-06 2.9E-11 106.0 16.8 120 31-192 284-409 (808)
14 PF02837 Glyco_hydro_2_N: Glyc 98.3 3.1E-06 6.8E-11 83.8 10.3 100 469-574 63-164 (167)
15 PF02140 Gal_Lectin: Galactose 98.1 3.3E-06 7.2E-11 74.5 4.4 48 767-815 1-52 (80)
16 smart00633 Glyco_10 Glycosyl h 98.0 1.9E-05 4.2E-10 84.2 9.1 116 85-225 3-125 (254)
17 PLN02705 beta-amylase 97.9 2.4E-05 5.1E-10 90.6 8.7 82 61-146 267-358 (681)
18 PLN02905 beta-amylase 97.9 2.8E-05 6.1E-10 90.2 9.2 112 63-186 287-432 (702)
19 PLN02161 beta-amylase 97.9 4.1E-05 8.8E-10 87.4 9.3 81 62-146 117-207 (531)
20 PLN02801 beta-amylase 97.9 3.8E-05 8.3E-10 87.7 8.9 83 60-146 35-127 (517)
21 PLN00197 beta-amylase; Provisi 97.9 3.9E-05 8.4E-10 88.3 9.0 82 61-146 126-217 (573)
22 PLN02803 beta-amylase 97.8 5E-05 1.1E-09 87.2 8.9 81 62-146 107-197 (548)
23 PF03198 Glyco_hydro_72: Gluca 97.7 0.00037 8.1E-09 76.1 13.0 152 30-221 8-179 (314)
24 TIGR03356 BGL beta-galactosida 97.7 9.2E-05 2E-09 85.0 8.3 97 62-170 54-151 (427)
25 PF13204 DUF4038: Protein of u 97.6 0.0011 2.3E-08 72.5 14.7 224 37-291 2-274 (289)
26 PF01373 Glyco_hydro_14: Glyco 97.4 0.00016 3.4E-09 81.4 5.5 114 63-186 17-152 (402)
27 PRK10150 beta-D-glucuronidase; 96.9 0.005 1.1E-07 73.8 11.3 100 471-576 62-179 (604)
28 PF00232 Glyco_hydro_1: Glycos 96.8 0.0013 2.9E-08 76.1 4.8 97 62-170 58-156 (455)
29 PF02837 Glyco_hydro_2_N: Glyc 96.7 0.0022 4.8E-08 63.4 5.6 67 621-715 66-136 (167)
30 PF00331 Glyco_hydro_10: Glyco 96.7 0.0022 4.7E-08 71.0 5.7 156 49-226 11-179 (320)
31 PRK10340 ebgA cryptic beta-D-g 96.7 0.0059 1.3E-07 77.3 10.0 94 474-576 109-206 (1021)
32 PF07745 Glyco_hydro_53: Glyco 96.5 0.0087 1.9E-07 66.6 9.0 104 65-192 27-137 (332)
33 COG3693 XynA Beta-1,4-xylanase 96.4 0.023 5E-07 62.3 10.9 133 71-226 55-194 (345)
34 PRK15014 6-phospho-beta-glucos 96.3 0.012 2.6E-07 68.8 8.5 97 62-170 69-168 (477)
35 PRK09525 lacZ beta-D-galactosi 96.3 0.016 3.4E-07 73.5 10.2 95 473-576 119-218 (1027)
36 PRK09852 cryptic 6-phospho-bet 96.1 0.014 3.1E-07 68.1 8.0 96 62-169 71-169 (474)
37 COG2730 BglC Endoglucanase [Ca 96.0 0.02 4.4E-07 65.5 8.8 137 38-192 43-193 (407)
38 TIGR01233 lacG 6-phospho-beta- 95.8 0.025 5.5E-07 65.9 8.6 97 62-170 53-150 (467)
39 PRK13511 6-phospho-beta-galact 95.8 0.025 5.3E-07 66.0 8.4 96 62-169 54-150 (469)
40 PLN02998 beta-glucosidase 95.7 0.011 2.4E-07 69.4 4.9 96 62-169 82-179 (497)
41 PRK09593 arb 6-phospho-beta-gl 95.6 0.016 3.5E-07 67.6 5.7 96 62-169 73-171 (478)
42 PLN02814 beta-glucosidase 95.5 0.014 3E-07 68.6 4.8 96 62-169 77-174 (504)
43 PF14488 DUF4434: Domain of un 95.5 0.19 4.1E-06 50.8 12.2 63 57-121 15-85 (166)
44 PRK09589 celA 6-phospho-beta-g 95.4 0.018 3.9E-07 67.2 5.2 96 62-169 67-165 (476)
45 PLN02849 beta-glucosidase 95.2 0.024 5.2E-07 66.7 5.3 96 62-169 79-176 (503)
46 PRK09936 hypothetical protein; 95.1 0.073 1.6E-06 57.9 8.3 57 57-120 33-91 (296)
47 COG3867 Arabinogalactan endo-1 94.6 0.16 3.6E-06 55.2 9.2 110 64-192 65-183 (403)
48 COG2723 BglB Beta-glucosidase/ 93.7 0.13 2.9E-06 59.3 6.9 96 62-169 59-157 (460)
49 PF14871 GHL6: Hypothetical gl 93.5 0.43 9.2E-06 46.5 9.0 98 66-168 4-123 (132)
50 smart00812 Alpha_L_fucos Alpha 92.4 23 0.00051 40.6 22.4 241 59-353 81-338 (384)
51 TIGR01515 branching_enzym alph 92.1 2 4.4E-05 52.0 14.1 69 52-121 142-226 (613)
52 TIGR00542 hxl6Piso_put hexulos 91.2 3.4 7.3E-05 44.5 13.4 131 61-219 15-149 (279)
53 COG3934 Endo-beta-mannanase [C 90.3 0.21 4.5E-06 57.5 3.1 156 39-212 3-167 (587)
54 smart00642 Aamy Alpha-amylase 88.9 1.1 2.4E-05 45.2 6.8 65 64-128 21-97 (166)
55 KOG2230 Predicted beta-mannosi 88.6 4.7 0.0001 47.6 12.2 149 38-226 328-494 (867)
56 PF02638 DUF187: Glycosyl hydr 88.3 2.1 4.6E-05 47.5 9.2 118 60-188 17-162 (311)
57 PRK14706 glycogen branching en 88.0 6.5 0.00014 48.0 13.7 54 68-121 174-237 (639)
58 PRK13210 putative L-xylulose 5 87.9 7.9 0.00017 41.4 13.1 131 62-219 16-149 (284)
59 PF02055 Glyco_hydro_30: O-Gly 87.7 2.7 5.9E-05 49.6 10.0 249 72-347 110-425 (496)
60 COG1649 Uncharacterized protei 85.9 8.7 0.00019 44.4 12.5 122 60-191 62-210 (418)
61 PRK05402 glycogen branching en 85.6 9.6 0.00021 47.2 13.6 54 68-121 272-335 (726)
62 KOG0496 Beta-galactosidase [Ca 84.4 0.24 5.3E-06 58.9 -0.8 67 732-814 310-377 (649)
63 PF01261 AP_endonuc_2: Xylose 82.5 2.1 4.6E-05 42.9 5.3 124 68-219 1-128 (213)
64 PRK12568 glycogen branching en 81.4 23 0.00051 43.9 14.3 55 67-123 275-341 (730)
65 PRK09441 cytoplasmic alpha-amy 81.1 2.6 5.6E-05 49.5 6.0 61 61-121 18-101 (479)
66 PLN02447 1,4-alpha-glucan-bran 81.0 27 0.00058 43.5 14.7 61 62-123 251-322 (758)
67 PF01229 Glyco_hydro_39: Glyco 80.3 10 0.00022 44.7 10.5 66 51-122 28-105 (486)
68 TIGR01531 glyc_debranch glycog 80.0 6 0.00013 51.6 9.0 113 39-157 104-236 (1464)
69 cd00019 AP2Ec AP endonuclease 80.0 14 0.00031 39.6 10.9 54 62-119 10-64 (279)
70 PRK14705 glycogen branching en 79.6 29 0.00062 45.5 14.8 56 66-121 770-835 (1224)
71 PF00128 Alpha-amylase: Alpha 79.6 2 4.3E-05 45.7 4.0 57 65-121 7-72 (316)
72 PRK01060 endonuclease IV; Prov 79.3 40 0.00087 36.1 14.0 93 64-185 14-109 (281)
73 TIGR02631 xylA_Arthro xylose i 79.3 25 0.00055 40.3 13.0 141 60-223 30-178 (382)
74 PRK09997 hydroxypyruvate isome 79.1 26 0.00056 37.3 12.4 49 54-119 10-58 (258)
75 PRK13209 L-xylulose 5-phosphat 78.7 13 0.00029 39.9 10.1 125 63-219 22-154 (283)
76 PF05913 DUF871: Bacterial pro 78.2 3 6.6E-05 47.2 5.1 72 50-127 2-73 (357)
77 PF14683 CBM-like: Polysacchar 77.8 2.4 5.3E-05 42.9 3.8 63 646-719 91-153 (167)
78 KOG4729 Galactoside-binding le 77.6 3.1 6.6E-05 44.8 4.6 52 762-815 43-100 (265)
79 PRK09989 hypothetical protein; 76.8 24 0.00052 37.5 11.3 43 63-119 16-58 (258)
80 PF08531 Bac_rhamnosid_N: Alph 75.9 13 0.00028 37.6 8.5 56 497-553 6-68 (172)
81 PF02679 ComA: (2R)-phospho-3- 75.8 4.3 9.3E-05 43.7 5.2 52 61-122 83-134 (244)
82 PF14307 Glyco_tran_WbsX: Glyc 74.7 31 0.00067 38.8 11.9 141 59-226 55-198 (345)
83 TIGR02402 trehalose_TreZ malto 74.1 5.7 0.00012 47.5 6.2 53 66-121 115-180 (542)
84 PRK09856 fructoselysine 3-epim 73.9 43 0.00092 35.7 12.3 130 63-219 14-145 (275)
85 COG3623 SgaU Putative L-xylulo 73.5 51 0.0011 35.5 12.1 24 61-84 17-40 (287)
86 TIGR03234 OH-pyruv-isom hydrox 73.4 58 0.0013 34.3 13.1 43 63-119 15-57 (254)
87 PF13200 DUF4015: Putative gly 73.0 11 0.00023 42.2 7.5 109 60-172 11-137 (316)
88 PRK12313 glycogen branching en 70.6 8.2 0.00018 47.0 6.6 55 67-121 176-240 (633)
89 cd06593 GH31_xylosidase_YicI Y 67.7 9.6 0.00021 41.9 5.8 67 59-126 21-91 (308)
90 PRK10785 maltodextrin glucosid 67.4 9.9 0.00022 46.0 6.3 57 65-121 182-246 (598)
91 PLN02960 alpha-amylase 67.4 11 0.00024 47.2 6.7 57 65-121 420-486 (897)
92 TIGR02104 pulA_typeI pullulana 67.2 10 0.00022 46.0 6.3 55 66-121 168-249 (605)
93 PRK09505 malS alpha-amylase; R 66.2 12 0.00025 46.2 6.5 59 64-122 232-313 (683)
94 COG0296 GlgB 1,4-alpha-glucan 65.5 11 0.00024 45.7 6.1 57 60-120 163-233 (628)
95 cd06592 GH31_glucosidase_KIAA1 65.4 16 0.00034 40.4 6.9 68 57-127 25-96 (303)
96 PF02065 Melibiase: Melibiase; 65.2 35 0.00076 39.3 9.8 89 55-143 51-148 (394)
97 PF13199 Glyco_hydro_66: Glyco 64.6 1.2E+02 0.0026 36.7 14.4 79 62-140 118-211 (559)
98 TIGR02403 trehalose_treC alpha 64.1 11 0.00024 45.1 5.7 58 63-122 28-96 (543)
99 PLN00196 alpha-amylase; Provis 63.6 33 0.00071 40.0 9.3 57 65-121 47-112 (428)
100 cd06595 GH31_xylosidase_XylS-l 63.1 47 0.001 36.4 10.1 65 60-124 23-97 (292)
101 PF01791 DeoC: DeoC/LacD famil 62.7 3.3 7.1E-05 43.8 0.9 58 65-127 79-136 (236)
102 PF06832 BiPBP_C: Penicillin-B 62.4 14 0.0003 33.1 4.8 49 498-554 35-84 (89)
103 TIGR03849 arch_ComA phosphosul 62.3 15 0.00032 39.5 5.7 52 62-123 71-122 (237)
104 TIGR02456 treS_nterm trehalose 61.9 17 0.00036 43.5 6.7 56 63-120 29-95 (539)
105 PRK10933 trehalose-6-phosphate 61.8 16 0.00035 43.8 6.6 55 64-121 35-101 (551)
106 PRK14582 pgaB outer membrane N 60.0 43 0.00093 41.3 9.8 110 62-189 334-467 (671)
107 PRK12677 xylose isomerase; Pro 60.0 1.3E+02 0.0027 34.7 13.1 89 63-169 32-124 (384)
108 PRK13398 3-deoxy-7-phosphohept 59.6 39 0.00085 36.8 8.5 81 31-121 14-98 (266)
109 PF08308 PEGA: PEGA domain; I 59.0 10 0.00022 32.3 3.1 39 498-546 3-41 (71)
110 PRK14510 putative bifunctional 58.0 15 0.00034 48.1 5.9 56 66-121 191-267 (1221)
111 cd04908 ACT_Bt0572_1 N-termina 57.9 33 0.00073 28.6 6.1 55 61-119 12-66 (66)
112 cd06589 GH31 The enzymes of gl 57.4 1.2E+02 0.0027 32.6 12.0 65 60-125 22-90 (265)
113 TIGR02100 glgX_debranch glycog 56.5 54 0.0012 40.6 9.9 55 67-121 189-265 (688)
114 smart00518 AP2Ec AP endonuclea 56.2 90 0.0019 33.3 10.6 90 65-184 13-103 (273)
115 KOG0626 Beta-glucosidase, lact 54.8 24 0.00052 41.8 6.2 112 63-184 92-207 (524)
116 PF11324 DUF3126: Protein of u 54.7 38 0.00082 29.2 5.7 37 498-534 17-58 (63)
117 PF01261 AP_endonuc_2: Xylose 53.0 58 0.0013 32.4 8.1 104 62-193 27-137 (213)
118 TIGR02401 trehalose_TreY malto 52.3 30 0.00065 43.5 6.8 64 60-123 14-87 (825)
119 PLN02361 alpha-amylase 50.1 36 0.00078 39.4 6.6 57 65-121 32-96 (401)
120 TIGR00677 fadh2_euk methylenet 49.8 56 0.0012 35.9 7.8 109 48-170 130-251 (281)
121 PF03659 Glyco_hydro_71: Glyco 49.4 54 0.0012 37.7 7.9 53 60-121 15-67 (386)
122 COG1306 Uncharacterized conser 48.1 37 0.0008 37.7 5.9 59 60-121 75-144 (400)
123 PRK14511 maltooligosyl trehalo 47.7 41 0.00089 42.6 7.0 63 60-126 18-94 (879)
124 cd06591 GH31_xylosidase_XylS X 47.3 31 0.00068 38.3 5.5 66 60-126 22-91 (319)
125 PRK14507 putative bifunctional 47.3 37 0.0008 45.8 6.8 60 60-123 756-829 (1693)
126 PRK03705 glycogen debranching 47.3 30 0.00064 42.6 5.7 55 67-121 184-262 (658)
127 KOG2024 Beta-Glucuronidase GUS 47.1 25 0.00054 38.3 4.4 52 470-522 84-135 (297)
128 COG3589 Uncharacterized conser 47.0 39 0.00084 38.1 6.0 72 50-128 4-76 (360)
129 PLN03059 beta-galactosidase; P 45.9 62 0.0014 40.7 8.1 43 621-663 468-517 (840)
130 PF10566 Glyco_hydro_97: Glyco 45.8 52 0.0011 36.1 6.7 115 60-182 30-160 (273)
131 cd06603 GH31_GANC_GANAB_alpha 45.4 35 0.00076 38.2 5.6 73 54-127 13-90 (339)
132 PRK00042 tpiA triosephosphate 43.5 43 0.00092 36.3 5.6 50 67-122 78-127 (250)
133 cd06602 GH31_MGAM_SI_GAA This 43.4 39 0.00083 38.0 5.5 73 54-127 13-92 (339)
134 cd06545 GH18_3CO4_chitinase Th 43.3 98 0.0021 33.0 8.3 91 92-214 36-127 (253)
135 cd06598 GH31_transferase_CtsZ 43.2 42 0.00091 37.3 5.7 67 60-126 22-95 (317)
136 PF08531 Bac_rhamnosid_N: Alph 42.8 28 0.00061 35.2 3.9 22 641-662 7-28 (172)
137 cd00311 TIM Triosephosphate is 41.7 52 0.0011 35.4 5.9 49 68-122 77-125 (242)
138 TIGR02102 pullulan_Gpos pullul 41.4 44 0.00095 43.5 6.1 21 101-121 555-575 (1111)
139 PF01120 Alpha_L_fucos: Alpha- 40.5 5.8E+02 0.013 28.7 19.9 231 66-351 95-343 (346)
140 PF12876 Cellulase-like: Sugar 40.0 57 0.0012 29.1 5.0 47 177-223 7-62 (88)
141 cd06416 GH25_Lys1-like Lys-1 i 38.8 63 0.0014 33.1 5.8 89 50-141 54-157 (196)
142 PF14701 hDGE_amylase: glucano 37.3 1.2E+02 0.0026 35.4 8.3 97 55-157 13-128 (423)
143 cd06599 GH31_glycosidase_Aec37 37.1 68 0.0015 35.6 6.1 66 61-126 28-98 (317)
144 cd06600 GH31_MGAM-like This fa 37.0 55 0.0012 36.4 5.4 70 54-126 13-89 (317)
145 smart00854 PGA_cap Bacterial c 37.0 2.9E+02 0.0062 29.2 10.6 45 65-118 63-107 (239)
146 PF07691 PA14: PA14 domain; I 36.5 1.5E+02 0.0033 27.9 7.8 70 475-552 47-122 (145)
147 PRK08673 3-deoxy-7-phosphohept 36.4 95 0.0021 35.1 7.1 82 31-121 80-164 (335)
148 PRK14566 triosephosphate isome 34.6 1E+02 0.0022 33.6 6.8 49 68-122 88-136 (260)
149 cd06601 GH31_lyase_GLase GLase 34.5 1.8E+02 0.0039 32.8 9.0 72 54-126 13-89 (332)
150 cd06604 GH31_glucosidase_II_Ma 34.0 71 0.0015 35.7 5.7 71 54-127 13-90 (339)
151 PF01055 Glyco_hydro_31: Glyco 33.9 83 0.0018 36.3 6.4 69 60-129 41-111 (441)
152 TIGR00419 tim triosephosphate 33.8 81 0.0018 33.2 5.7 44 68-121 74-117 (205)
153 TIGR00433 bioB biotin syntheta 32.5 69 0.0015 34.7 5.2 53 65-120 123-177 (296)
154 PF02228 Gag_p19: Major core p 32.4 20 0.00044 31.9 0.8 36 60-112 20-55 (92)
155 KOG3833 Uncharacterized conser 32.4 45 0.00098 37.2 3.6 53 63-121 444-499 (505)
156 TIGR02455 TreS_stutzeri trehal 32.3 1.1E+02 0.0024 37.6 7.1 76 60-139 76-176 (688)
157 cd06565 GH20_GcnA-like Glycosy 32.3 2.1E+02 0.0046 31.6 9.0 66 60-128 15-87 (301)
158 PF12733 Cadherin-like: Cadher 32.2 99 0.0021 27.2 5.3 55 478-549 16-71 (88)
159 PLN02561 triosephosphate isome 32.1 89 0.0019 34.0 5.8 50 67-122 80-129 (253)
160 cd06418 GH25_BacA-like BacA is 31.9 1.9E+02 0.0041 30.5 8.1 90 60-171 50-140 (212)
161 PRK12858 tagatose 1,6-diphosph 31.8 52 0.0011 37.3 4.1 66 53-121 98-163 (340)
162 PRK09856 fructoselysine 3-epim 31.8 61 0.0013 34.5 4.6 56 62-121 90-149 (275)
163 KOG0622 Ornithine decarboxylas 31.5 66 0.0014 37.2 4.8 67 59-135 190-257 (448)
164 cd06547 GH85_ENGase Endo-beta- 31.4 73 0.0016 36.0 5.2 109 77-220 31-140 (339)
165 PLN02877 alpha-amylase/limit d 31.0 90 0.002 40.1 6.4 21 101-121 466-486 (970)
166 PLN02429 triosephosphate isome 30.9 88 0.0019 35.1 5.6 49 68-122 140-188 (315)
167 PRK14565 triosephosphate isome 30.7 93 0.002 33.5 5.6 50 67-122 77-126 (237)
168 COG1735 Php Predicted metal-de 30.5 2.1E+02 0.0046 32.1 8.3 155 29-226 14-173 (316)
169 cd06597 GH31_transferase_CtsY 30.2 94 0.002 35.0 5.8 73 54-126 13-110 (340)
170 PTZ00372 endonuclease 4-like p 30.0 1.8E+02 0.0038 34.0 8.0 84 38-122 149-240 (413)
171 PTZ00333 triosephosphate isome 29.9 1E+02 0.0023 33.4 5.9 49 68-122 82-130 (255)
172 PRK15492 triosephosphate isome 29.8 1E+02 0.0023 33.6 5.9 49 68-122 87-135 (260)
173 PRK10426 alpha-glucosidase; Pr 29.6 3.1E+02 0.0068 33.7 10.5 64 63-126 222-294 (635)
174 COG3915 Uncharacterized protei 29.4 1.7E+02 0.0037 29.0 6.5 47 67-119 39-87 (155)
175 smart00481 POLIIIAc DNA polyme 29.3 1.5E+02 0.0033 24.6 5.7 44 63-119 16-59 (67)
176 COG0366 AmyA Glycosidases [Car 29.1 72 0.0016 36.8 4.9 55 66-120 33-96 (505)
177 PRK14567 triosephosphate isome 28.8 1.1E+02 0.0024 33.2 5.9 49 68-122 78-126 (253)
178 COG2884 FtsE Predicted ATPase 28.8 43 0.00092 35.3 2.5 16 648-663 55-70 (223)
179 TIGR02103 pullul_strch alpha-1 28.6 92 0.002 39.7 5.9 21 101-121 404-424 (898)
180 PLN02540 methylenetetrahydrofo 27.8 1.2E+02 0.0025 36.8 6.3 89 68-170 162-259 (565)
181 COG1523 PulA Type II secretory 27.7 89 0.0019 38.7 5.4 55 67-121 205-285 (697)
182 PRK09875 putative hydrolase; P 27.0 2.7E+02 0.0058 30.9 8.5 89 32-140 7-95 (292)
183 PRK13210 putative L-xylulose 5 26.5 94 0.002 33.2 4.9 59 62-121 94-153 (284)
184 PRK13209 L-xylulose 5-phosphat 26.5 3E+02 0.0065 29.4 8.8 103 59-191 54-161 (283)
185 PF14587 Glyco_hydr_30_2: O-Gl 25.9 3.5E+02 0.0077 31.3 9.4 117 90-225 93-226 (384)
186 KOG0805 Carbon-nitrogen hydrol 25.7 1.9E+02 0.0042 31.5 6.7 54 102-163 38-91 (337)
187 PRK10076 pyruvate formate lyas 25.6 3.6E+02 0.0078 28.4 8.9 125 61-219 53-209 (213)
188 PRK11372 lysozyme inhibitor; P 25.4 1.4E+02 0.003 28.4 5.1 19 7-25 1-19 (109)
189 PRK12331 oxaloacetate decarbox 25.3 1.4E+02 0.003 35.1 6.3 55 54-120 88-142 (448)
190 PRK09267 flavodoxin FldA; Vali 25.3 3.5E+02 0.0076 26.7 8.4 74 42-118 44-117 (169)
191 cd01299 Met_dep_hydrolase_A Me 25.1 1.4E+02 0.0029 32.9 6.0 59 60-121 118-180 (342)
192 cd08560 GDPD_EcGlpQ_like_1 Gly 25.0 2.3E+02 0.0049 32.4 7.7 52 63-120 246-297 (356)
193 COG1082 IolE Sugar phosphate i 25.0 7.8E+02 0.017 25.8 11.5 51 60-119 13-63 (274)
194 COG0149 TpiA Triosephosphate i 24.5 1.5E+02 0.0032 32.3 5.8 49 68-122 81-129 (251)
195 cd06568 GH20_SpHex_like A subg 24.5 2.5E+02 0.0055 31.5 7.9 62 60-121 16-95 (329)
196 PF04914 DltD_C: DltD C-termin 24.4 66 0.0014 31.5 2.9 52 101-171 36-88 (130)
197 PLN02784 alpha-amylase 24.2 1.5E+02 0.0033 37.6 6.5 57 65-121 524-588 (894)
198 TIGR00676 fadh2 5,10-methylene 24.2 2.9E+02 0.0062 30.1 8.1 109 47-170 125-247 (272)
199 PF03422 CBM_6: Carbohydrate b 24.0 2.9E+02 0.0063 25.6 7.2 72 472-550 30-110 (125)
200 PRK09997 hydroxypyruvate isome 23.9 1.1E+02 0.0023 32.6 4.6 60 62-121 85-144 (258)
201 PF03102 NeuB: NeuB family; I 23.1 1E+02 0.0022 33.2 4.3 64 59-122 53-121 (241)
202 PRK09432 metF 5,10-methylenete 23.0 1.6E+02 0.0034 32.7 5.8 88 67-170 168-266 (296)
203 PF08924 DUF1906: Domain of un 22.9 1.8E+02 0.004 28.4 5.7 92 60-171 36-128 (136)
204 cd07937 DRE_TIM_PC_TC_5S Pyruv 22.9 1.9E+02 0.0041 31.5 6.4 49 59-119 88-136 (275)
205 cd02742 GH20_hexosaminidase Be 22.8 1.7E+02 0.0036 32.3 6.1 60 59-121 13-92 (303)
206 cd00544 CobU Adenosylcobinamid 22.3 4.7E+02 0.01 26.4 8.7 48 157-212 101-148 (169)
207 smart00758 PA14 domain in bact 22.0 2.8E+02 0.0061 26.2 6.7 63 476-547 46-109 (136)
208 PRK08645 bifunctional homocyst 21.7 3.1E+02 0.0067 33.5 8.5 109 45-169 461-578 (612)
209 KOG4039 Serine/threonine kinas 21.5 1.8E+02 0.0039 30.5 5.3 67 56-127 103-172 (238)
210 cd02871 GH18_chitinase_D-like 21.4 5.3E+02 0.012 28.5 9.7 87 101-216 60-146 (312)
211 TIGR01698 PUNP purine nucleoti 20.9 1.3E+02 0.0029 32.4 4.6 41 41-81 47-88 (237)
212 PLN02389 biotin synthase 20.8 1.3E+02 0.0028 34.6 4.7 50 65-117 178-229 (379)
213 PRK13791 lysozyme inhibitor; P 20.7 1.8E+02 0.0038 27.9 4.9 19 7-25 2-20 (113)
214 PF00121 TIM: Triosephosphate 20.6 71 0.0015 34.4 2.5 50 67-122 76-125 (244)
215 PRK09739 hypothetical protein; 20.5 2.8E+02 0.0061 28.3 6.8 75 45-120 4-87 (199)
216 PF01075 Glyco_transf_9: Glyco 20.5 63 0.0014 33.6 2.1 78 43-123 103-194 (247)
217 PRK10966 exonuclease subunit S 20.2 5.8E+02 0.013 29.5 10.0 85 46-143 41-135 (407)
218 KOG1065 Maltase glucoamylase a 20.1 1.8E+02 0.0038 36.6 5.9 60 64-128 313-378 (805)
219 cd06831 PLPDE_III_ODC_like_AZI 20.1 2.6E+02 0.0057 32.1 7.1 66 59-136 147-215 (394)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=1.7e-233 Score=2014.49 Aligned_cols=804 Identities=74% Similarity=1.319 Sum_probs=751.7
Q ss_pred chhhHHHHHHHHHhcCCCCcccceeEEEccCcEEECCeEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCc
Q 003498 8 GMCNVLLILLLGCSGLFAPVEVEGSVSYDSKAIAINGKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNG 87 (815)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~idG~~~~l~sG~iHy~R~~~e~W~d~l~k~Ka~GlN~I~tyvfWn~ 87 (815)
+...+||||||.+.+.+-.--.+.+|+||+++|+|||+|++|+||+|||||+||++|+|+|+||||+|||||+||||||+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~ 84 (840)
T PLN03059 5 SLVVFLLLFLLFLLSSSWVSHGSASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNG 84 (840)
T ss_pred ceehhhHHHHHHHhhhhhhccceeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccc
Confidence 44455555555444333222235689999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCceeccccCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHH
Q 003498 88 HEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDM 167 (815)
Q Consensus 88 HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~GPyicaEw~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~ 167 (815)
|||+||+|||+|++||++||++|+++||||||||||||||||++||||.||+++|+|++||+||+|+++|++|+++|+++
T Consensus 85 HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~ 164 (840)
T PLN03059 85 HEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDM 164 (840)
T ss_pred cCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccccCCCceEEecccccccCcccccCCCCHHHHHHHHHHHHhcCCCcceeecCCCCCCCccccCCCCcccccCCC
Q 003498 168 MKAERLFESQGGPIILSQIENEYGPMEYEIGAPGRSYTRWAAKMAVGLGTGVPWIMCKQDDAPDPLINTCNGFYCDYFSP 247 (815)
Q Consensus 168 l~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~vP~~~~~~~~~p~~vi~t~ng~~~~~f~~ 247 (815)
|++++|++++||||||+|||||||++..+|+.+|++||+||++|++++|++|||+||+|.++++++++||||.+|+.|.+
T Consensus 165 l~~~~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~~~f~~ 244 (840)
T PLN03059 165 MKSEKLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCENFKP 244 (840)
T ss_pred HhhcceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchhhhccc
Confidence 99889999999999999999999999888888999999999999999999999999999888999999999999999998
Q ss_pred CCCCCCceeeecccccccccCCCCCCCChHHHHHHHHHHHHhCCeeeeeeeeecCCCCCCCCCCCcccccCCCCCCCCcC
Q 003498 248 NKAYKPKMWTEAWTGWYTEFGGPVPHRPVEDLAFSVAKFIQKGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEY 327 (815)
Q Consensus 248 ~~p~~P~~~tE~~~GWf~~wG~~~~~r~~ed~a~~v~~~~~~g~s~~nyYM~hGGTNFG~~~G~~~~~TSYDYdAPl~E~ 327 (815)
+++.+|+||||||+|||++||++++.|+++|+|+++++||++|+|++||||||||||||||||+++++|||||||||||+
T Consensus 245 ~~~~~P~m~tE~w~GWf~~wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~ 324 (840)
T PLN03059 245 NKDYKPKMWTEAWTGWYTEFGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEY 324 (840)
T ss_pred CCCCCCcEEeccCchhHhhcCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCccccc
Confidence 88889999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHhhcCCcCCCCCccccCCCccceeeeecccceeeeeccccccceeEEEeCCcccccCCccee
Q 003498 328 GLLRQPKWGHLKDLHRAIKLCEPALVSGNPTVMPLGNYQEAHVFKSKSACAAFLANYNQRTFAKVAFGNQHYNLPPWSIS 407 (815)
Q Consensus 328 G~~~~pKy~~lr~l~~~i~~~~~~l~~~~p~~~~~g~~~~~~~y~~~~~~~~fl~n~~~~~~~~v~f~~~~~~lp~~svs 407 (815)
|++++|||.|||++|++++.|+++|+..+|...+||+.+|+++|...+.|+||+.|++++.+.+|+|+|++|.|||||||
T Consensus 325 G~~t~pKy~~lr~l~~~~~~~~~~l~~~~p~~~~lg~~~ea~~y~~~~~caaFl~n~~~~~~~~v~f~g~~y~lp~~Svs 404 (840)
T PLN03059 325 GLPREPKWGHLRDLHKAIKLCEPALVSVDPTVTSLGSNQEAHVFKSKSACAAFLANYDTKYSVKVTFGNGQYDLPPWSVS 404 (840)
T ss_pred cCcchhHHHHHHHHHHHHHhcCccccCCCCceeccCCceeEEEccCccchhhheeccCCCCceeEEECCcccccCcccee
Confidence 99987899999999999999999998888988999999999999965589999999999999999999999999999999
Q ss_pred ecCCCCccccccceecccccccccccCCCCCCCCcccccCC-CccCCCCCccccchhhhhcCCCCCCceEEEEEEecCCC
Q 003498 408 ILPDCKNTVYNTARVGHQSTQMKMTPVPIHGGFSWQAFNEV-PSAYGDSSFTMSGLLEQINTTRDATDYLWYMTDVKIDP 486 (815)
Q Consensus 408 il~dc~~v~~nt~~v~~q~~~~~~~~~~~~~~~~w~~~~e~-~~~~~~~~~~~~~~~Eql~~t~d~sgYlwY~T~v~~~~ 486 (815)
|||||++++|||++|++|++.+++.+. ...+.|+++.|+ .+..++.++++..++|||++|+|.|||+||+|+|..+.
T Consensus 405 ilpd~~~~lfnta~v~~q~~~~~~~~~--~~~~~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~ 482 (840)
T PLN03059 405 ILPDCKTAVFNTARLGAQSSQMKMNPV--GSTFSWQSYNEETASAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVHIDP 482 (840)
T ss_pred ecccccceeeeccccccccceeecccc--cccccceeecccccccccCCCcchhhHHHhhcccCCCCceEEEEEEEeecC
Confidence 999999999999999999887654322 255699999999 55556678999999999999999999999999999877
Q ss_pred CcccccCCCcceEEecCcceEEEEEECCEEEEEEecccCCCeeEEEeeeeccCCccEEEEEEeccCCccccCCCCccccc
Q 003498 487 SEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGINKIALLSIAVGLPNVGPHFETWNAG 566 (815)
Q Consensus 487 ~~~~~~~g~~~~L~v~~~~d~~~vfVNg~~vGs~~g~~~~~~~~~~~~v~l~~G~n~L~lLven~Gr~NyG~~~~~~~kG 566 (815)
++..++++.+++|+|.+++|++||||||+++|+++++.....++++.+|+|+.|.|+|+||||||||+|||++|+++.||
T Consensus 483 ~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le~~~kG 562 (840)
T PLN03059 483 DEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFETWNAG 562 (840)
T ss_pred CccccccCCCceEEEcccCcEEEEEECCEEEEEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCccCccccccccc
Confidence 76556788899999999999999999999999999988788899999999999999999999999999999999999999
Q ss_pred ccccEEEccccCCcccCccCCcEEEcCCCccccccccCCCCCCCccccCCcccCCCCceEEEEEEECCCCCCceEEecCC
Q 003498 567 VLGPVTLNGLNEGRRDLSWQKWTYKIGLEGEKLNLHSLSGGSSVEWAEGSLVAQRQPLTWYRTTFSAPAGNAPLALDMGS 646 (815)
Q Consensus 567 I~G~V~L~g~~~g~~dLs~~~W~y~vgL~GE~~~~~~~~~~~~~~W~~~~~~~~~~~~twYkttF~~p~g~dpv~Ldl~g 646 (815)
|+|+|+|+|+++++.||+++.|.|++||+||.++|+++++..+++|.+.+..+..+||+|||++|++|+++|||||||+|
T Consensus 563 I~g~V~i~g~~~g~~dls~~~W~y~lgL~GE~~~i~~~~~~~~~~W~~~~~~~~~~p~twYK~~Fd~p~g~Dpv~LDm~g 642 (840)
T PLN03059 563 VLGPVTLKGLNEGTRDLSGWKWSYKIGLKGEALSLHTITGSSSVEWVEGSLLAQKQPLTWYKTTFDAPGGNDPLALDMSS 642 (840)
T ss_pred ccccEEEecccCCceecccCccccccCccceeccccccCCCCCccccccccccCCCCceEEEEEEeCCCCCCCEEEeccc
Confidence 99999999999999999999999999999999999988766789998765555667899999999999999999999999
Q ss_pred CceEEEEECCeeccccccccc-cCCCCCcccccCccccccccCCCCCCceeEEecCCCcccccCcEEEEEeecCCCCCce
Q 003498 647 MGKGQVWVNGQSIGRHWPAYK-ASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHVPRSWLKPTGNLLVVFEEWGGNPNGI 725 (815)
Q Consensus 647 ~gKG~~wVNG~niGRYWp~~~-~~G~~~~c~y~G~y~~~kc~~~cg~PqqtlYhVP~~~Lk~g~N~LVvfEe~gg~p~~I 725 (815)
||||+|||||+||||||+.+. .+|| +.|||+|+|+++||+||||+||||||||||+|||+|+|+||||||+||+|..|
T Consensus 643 mGKG~aWVNG~nIGRYW~~~a~~~gC-~~c~y~g~~~~~kc~~~cggP~q~lYHVPr~~Lk~g~N~lViFEe~gg~p~~I 721 (840)
T PLN03059 643 MGKGQIWINGQSIGRHWPAYTAHGSC-NGCNYAGTFDDKKCRTNCGEPSQRWYHVPRSWLKPSGNLLIVFEEWGGNPAGI 721 (840)
T ss_pred CCCeeEEECCcccccccccccccCCC-ccccccccccchhhhccCCCceeEEEeCcHHHhccCCceEEEEEecCCCCCce
Confidence 999999999999999998743 3577 88999999999999999999999999999999999999999999999999999
Q ss_pred EEEeechhhhcccccccCCcccccccccCCCCCCCCCCeeeeecCCCCeEeEEEeeecCCCcccCCCccccccccCchhH
Q 003498 726 SLVRREIDSVCAYMYEWQPTLINWQLHASGKVNKPLRPKAHLMCGPGQKIKSIKFASFGTPEGVCGSYRQGSCHAFHSYD 805 (815)
Q Consensus 726 ~~~~~~~~~vc~~~~e~~p~~~~~~~~~~~~~~~~~~~~~~l~C~~g~~is~i~faSfG~p~G~Cg~~~~g~c~a~~s~~ 805 (815)
+|+++++++||++|+|+|| ++++|++++....+..+|+++|+|+.|++||+|+|||||+|+|+|++|+.|+|||++|++
T Consensus 722 ~~~~~~~~~~c~~~~e~~p-~~~~w~~~~~~~~~~~~~~~~L~C~~G~~Is~I~fAsYGrp~gtC~~~~~g~C~a~~S~~ 800 (840)
T PLN03059 722 SLVKRTTDSVCADIFEGQP-ALKNWQIIASGKVNSLQPKAHLWCPPGQKISKIKFASFGVPQGTCGSFREGSCHAHKSYD 800 (840)
T ss_pred EEEEeecCcccccccccCC-ccccccccccccccccCCcEEEECCCCceEEEEEEecCCCCCCCCCCCCCCCEeCCcHHH
Confidence 9999999999999999995 699999976665557799999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCC
Q 003498 806 AFQRVCIFSV 815 (815)
Q Consensus 806 ~v~k~C~gk~ 815 (815)
+|+|+|+||+
T Consensus 801 vV~kaC~Gk~ 810 (840)
T PLN03059 801 AFERNCIGKQ 810 (840)
T ss_pred HHHHHCCCCC
Confidence 9999999995
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.2e-177 Score=1488.40 Aligned_cols=630 Identities=65% Similarity=1.158 Sum_probs=594.0
Q ss_pred ceeEEEccCcEEECCeEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHH
Q 003498 30 EGSVSYDSKAIAINGKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKL 109 (815)
Q Consensus 30 ~~~v~~d~~~~~idG~~~~l~sG~iHy~R~~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~l 109 (815)
++.|+||+++|+|||+|++++||+|||||++|+||+|+|+|||++|+|+|+||||||+|||+||+|||+|++||++||++
T Consensus 17 ~~~v~yd~~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl 96 (649)
T KOG0496|consen 17 SFNVTYDKRSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKL 96 (649)
T ss_pred eeEEeccccceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEecCceeccccCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEeccccc
Q 003498 110 AKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENE 189 (815)
Q Consensus 110 a~~~GL~ViLR~GPyicaEw~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENE 189 (815)
|+++||||+||+||||||||++||||.||+.+|++.+||+|++|+++|++|+++|+++|| +|+++|||||||+|||||
T Consensus 97 ~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGPIIl~QIENE 174 (649)
T KOG0496|consen 97 IHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGPIILVQIENE 174 (649)
T ss_pred HHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCCEEEEEeech
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred ccCcccccCCCCHHHHHHHHHHHHhcCCCcceeecCCCCCCCccccCCCCccc-ccCC-CCCCCCCceeeeccccccccc
Q 003498 190 YGPMEYEIGAPGRSYTRWAAKMAVGLGTGVPWIMCKQDDAPDPLINTCNGFYC-DYFS-PNKAYKPKMWTEAWTGWYTEF 267 (815)
Q Consensus 190 yg~~~~~~~~~~~~Y~~~l~~~~~~~g~~vP~~~~~~~~~p~~vi~t~ng~~~-~~f~-~~~p~~P~~~tE~~~GWf~~w 267 (815)
||.+..+|++.+++|++|.+.|+..++.+|||+||+|.|+|+++|++|||++| +.|. +++|++|+||||||+|||++|
T Consensus 175 YG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~~w 254 (649)
T KOG0496|consen 175 YGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFTHW 254 (649)
T ss_pred hhHHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecccccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999 9998 999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHhCCeeeeeeeeecCCCCCCCCCCCcccccCCCCCCCCcCCCCCchhHHHHHHHHHHHHh
Q 003498 268 GGPVPHRPVEDLAFSVAKFIQKGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKL 347 (815)
Q Consensus 268 G~~~~~r~~ed~a~~v~~~~~~g~s~~nyYM~hGGTNFG~~~G~~~~~TSYDYdAPl~E~G~~~~pKy~~lr~l~~~i~~ 347 (815)
|++++.|++||+|+.|++|+++|+|++|||||||||||||||| ++.+|||||||||| |..|+|||+|+|.+|.+++.
T Consensus 255 Gg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G-~~~atsy~~dap~d--gl~~~pk~ghlk~~hts~d~ 331 (649)
T KOG0496|consen 255 GGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNG-PFIATSYDYDAPLD--GLLRQPKYGHLKPLHTSYDY 331 (649)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccC-cccccccccccccc--hhhcCCCccccccchhhhhh
Confidence 9999999999999999999999999999999999999999998 99999999999999 99999999999999999999
Q ss_pred hcCCcCCCCCccccCCCccceeeeecccceeeeeccccccceeEEEeCCcccccCCcceeecCCCCccccccceeccccc
Q 003498 348 CEPALVSGNPTVMPLGNYQEAHVFKSKSACAAFLANYNQRTFAKVAFGNQHYNLPPWSISILPDCKNTVYNTARVGHQST 427 (815)
Q Consensus 348 ~~~~l~~~~p~~~~~g~~~~~~~y~~~~~~~~fl~n~~~~~~~~v~f~~~~~~lp~~svsil~dc~~v~~nt~~v~~q~~ 427 (815)
|++.+..+++...++|+.+++ |++|+.|++....+.+.|++.+|.+|+|+|+|||||++++|||+++.+|
T Consensus 332 ~ep~lv~gd~~~~kyg~~~~~--------C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~~-- 401 (649)
T KOG0496|consen 332 CEPALVAGDITTAKYGNLREA--------CAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMAQ-- 401 (649)
T ss_pred cCccccccCcccccccchhhH--------HHHHHhcCCCCCCCccccCCCccccCceeEEechhhcchhhhccccccc--
Confidence 999999999887777666544 9999999999999999999999999999999999999999999987644
Q ss_pred ccccccCCCCCCCCcccccCCCccCCCCCccccchhhhhcCCCCCCceEEEEEEecCCCCcccccCCCcceEEec-Ccce
Q 003498 428 QMKMTPVPIHGGFSWQAFNEVPSAYGDSSFTMSGLLEQINTTRDATDYLWYMTDVKIDPSEGFLRSGNYPVLTVM-SAGH 506 (815)
Q Consensus 428 ~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~~~~Eql~~t~d~sgYlwY~T~v~~~~~~~~~~~g~~~~L~v~-~~~d 506 (815)
|....||++. |..++ .++|++|+|.++.+.+++ +.|+|. +++|
T Consensus 402 --------------~~~~~e~~~~------------~~~~~---~~~~ll~~~~~t~d~sd~-------t~~~i~ls~g~ 445 (649)
T KOG0496|consen 402 --------------WISFTEPIPS------------EAVGQ---SFGGLLEQTNLTKDKSDT-------TSLKIPLSLGH 445 (649)
T ss_pred --------------cccccCCCcc------------ccccC---cceEEEEEEeeccccCCC-------ceEeecccccc
Confidence 5556676543 44444 677889998887665552 467888 9999
Q ss_pred EEEEEECCEEEEEEecccCCCeeEEEeeeeccCCccEEEEEEeccCCccccCCCCcccccccccEEEccccCCcccCccC
Q 003498 507 ALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGINKIALLSIAVGLPNVGPHFETWNAGVLGPVTLNGLNEGRRDLSWQ 586 (815)
Q Consensus 507 ~~~vfVNg~~vGs~~g~~~~~~~~~~~~v~l~~G~n~L~lLven~Gr~NyG~~~~~~~kGI~G~V~L~g~~~g~~dLs~~ 586 (815)
++||||||+++|+.+++.++..+.+.+++.|+.|.|+|+||||||||+||| +++++.|||+|+|+|+|. +||+++
T Consensus 446 ~~hVfvNg~~~G~~~g~~~~~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G-~~e~~~~Gi~g~v~l~g~----~~l~~~ 520 (649)
T KOG0496|consen 446 ALHVFVNGEFAGSLHGNNEKIKLNLSQPVGLKAGENKLALLSENVGLPNYG-HFENDFKGILGPVYLNGL----IDLTWT 520 (649)
T ss_pred eEEEEECCEEeeeEeccccceeEEeecccccccCcceEEEEEEecCCCCcC-cccccccccccceEEeee----ecccee
Confidence 999999999999999998888899999999999999999999999999999 889999999999999997 689988
Q ss_pred CcEEEcCCCccccccccCCCCCCCccccCCcccCCCCceEEEEEEECCCCCCceEEecCCCceEEEEECCeecccccccc
Q 003498 587 KWTYKIGLEGEKLNLHSLSGGSSVEWAEGSLVAQRQPLTWYRTTFSAPAGNAPLALDMGSMGKGQVWVNGQSIGRHWPAY 666 (815)
Q Consensus 587 ~W~y~vgL~GE~~~~~~~~~~~~~~W~~~~~~~~~~~~twYkttF~~p~g~dpv~Ldl~g~gKG~~wVNG~niGRYWp~~ 666 (815)
.|.|++||+||.+.+|++++..+++|......+..+|++||| +|++|++.+||+|||.|||||+|||||+|||||||++
T Consensus 521 ~w~~~~gl~ge~~~~~~~~~~~~v~w~~~~~~~~k~P~~w~k-~f~~p~g~~~t~Ldm~g~GKG~vwVNG~niGRYW~~~ 599 (649)
T KOG0496|consen 521 KWPYKVGLKGEKLGLHTEEGSSKVKWKKLSNTATKQPLTWYK-TFDIPSGSEPTALDMNGWGKGQVWVNGQNIGRYWPSF 599 (649)
T ss_pred ecceecccccchhhccccccccccceeeccCcccCCCeEEEE-EecCCCCCCCeEEecCCCcceEEEECCcccccccCCC
Confidence 999999999999999999988899998876655558999999 9999999999999999999999999999999999986
Q ss_pred ccCCCCCcccccCccccccccCCCCCCceeEEecCCCcccccCcEEEEEeecCCCCCceEEEeechhhhccccccc
Q 003498 667 KASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHVPRSWLKPTGNLLVVFEEWGGNPNGISLVRREIDSVCAYMYEW 742 (815)
Q Consensus 667 ~~~G~~~~c~y~G~y~~~kc~~~cg~PqqtlYhVP~~~Lk~g~N~LVvfEe~gg~p~~I~~~~~~~~~vc~~~~e~ 742 (815)
| | |++|||||+|||++.|+||||||+||+|.+|+|+++++..+|+.++|+
T Consensus 600 ------------G-------------~-Q~~yhvPr~~Lk~~~N~lvvfEee~~~p~~i~~~~~~~~~~~~~v~~~ 649 (649)
T KOG0496|consen 600 ------------G-------------P-QRTYHVPRSWLKPSGNLLVVFEEEGGDPNGISFVTRPVLSTCAYVREH 649 (649)
T ss_pred ------------C-------------C-ceEEECcHHHhCcCCceEEEEEeccCCCccceEEEeEeeeEeeecccC
Confidence 4 8 566789999999999999999999999999999999999999998763
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=4.2e-91 Score=759.36 Aligned_cols=297 Identities=43% Similarity=0.814 Sum_probs=234.0
Q ss_pred cEEECCeEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEE
Q 003498 39 AIAINGKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVN 118 (815)
Q Consensus 39 ~~~idG~~~~l~sG~iHy~R~~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vi 118 (815)
+|+|||||++|+||||||+|+||++|+|+|+||||+|+|||+||||||+|||+||+|||+|++||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCceeccccCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEecccccccCcccccC
Q 003498 119 LRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIG 198 (815)
Q Consensus 119 LR~GPyicaEw~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~ 198 (815)
|||||||||||++||+|.||.+++++++||+|++|+++|++|+++|+++++ ++++++||||||+|||||||..
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GGpII~vQvENEyg~~----- 153 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIK--PLQYTNGGPIIMVQVENEYGSY----- 153 (319)
T ss_dssp EEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEEESSSGGCT-----
T ss_pred ecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHH--hhhhcCCCceehhhhhhhhCCC-----
Confidence 999999999999999999999999999999999999999999999999999 8999999999999999999953
Q ss_pred CCCHHHHHHHHHHHHhcCCC-cceeecCCC--------CCCCccccCCCCccccc--------CCCCCCCCCceeeeccc
Q 003498 199 APGRSYTRWAAKMAVGLGTG-VPWIMCKQD--------DAPDPLINTCNGFYCDY--------FSPNKAYKPKMWTEAWT 261 (815)
Q Consensus 199 ~~~~~Y~~~l~~~~~~~g~~-vP~~~~~~~--------~~p~~vi~t~ng~~~~~--------f~~~~p~~P~~~tE~~~ 261 (815)
.++++|++.|++++++.+++ ++.++++.. ++|+..+.+|+++.|.. ....+|++|.|++|||+
T Consensus 154 ~~~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~ 233 (319)
T PF01301_consen 154 GTDRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWG 233 (319)
T ss_dssp SS-HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEES
T ss_pred cccHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEecc
Confidence 48999999999999999987 667776542 34544466666666632 12456889999999999
Q ss_pred ccccccCCCCCCCChHHHHHHHHHHHHhCCeeeeeeeeecCCCCCCCCCCCcc----cccCCCCCCCCcCCCCCchhHHH
Q 003498 262 GWYTEFGGPVPHRPVEDLAFSVAKFIQKGGSFINYYMYHGGTNFGRTAGGPFI----ATSYDYDAPLDEYGLLRQPKWGH 337 (815)
Q Consensus 262 GWf~~wG~~~~~r~~ed~a~~v~~~~~~g~s~~nyYM~hGGTNFG~~~G~~~~----~TSYDYdAPl~E~G~~~~pKy~~ 337 (815)
|||++||++++.+++++++..+++++++|.+ +||||||||||||+++|+... +|||||||||+|+|+++ |||.+
T Consensus 234 Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g~~-~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~~-~Ky~~ 311 (319)
T PF01301_consen 234 GWFDHWGGPHYTRPAEDVAADLARMLSKGNS-LNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQLT-PKYYE 311 (319)
T ss_dssp S---BTTS--HHHHHHHHHHHHHHHHHHCSE-EEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHH
T ss_pred ccccccCCCCccCCHHHHHHHHHHHHHhhcc-cceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCcC-HHHHH
Confidence 9999999999999999999999999999966 799999999999999987654 59999999999999995 99999
Q ss_pred HHHHHHH
Q 003498 338 LKDLHRA 344 (815)
Q Consensus 338 lr~l~~~ 344 (815)
||+||.+
T Consensus 312 lr~l~~~ 318 (319)
T PF01301_consen 312 LRRLHQK 318 (319)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999874
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.3e-37 Score=356.80 Aligned_cols=290 Identities=25% Similarity=0.334 Sum_probs=212.8
Q ss_pred EEEccCcEEECCeEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEE-cccCCccCCCCceeeeccchhHHHHHHHHH
Q 003498 33 VSYDSKAIAINGKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQT-YVFWNGHEPSPGKYYFEGNYDLVKFIKLAK 111 (815)
Q Consensus 33 v~~d~~~~~idG~~~~l~sG~iHy~R~~~e~W~d~l~k~Ka~GlN~I~t-yvfWn~HEp~~G~ydF~G~~dL~~fl~la~ 111 (815)
|.+++..+++||+|++++||.+||+|+|+++|.|+|+|||++|+|+|++ |++||.|||++|+|||+ .+|++ ||++|+
T Consensus 1 ~~~~~~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~ 78 (673)
T COG1874 1 VSYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAY 78 (673)
T ss_pred CcccccceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHH
Confidence 4678899999999999999999999999999999999999999999999 99999999999999999 88888 999999
Q ss_pred HcCCEEEEecCc-eeccccCCCCCCcccccCCCeeee---------cCChhhHHHHHHHHHHHHHHHHhccccccCCCce
Q 003498 112 QAGLYVNLRIGP-YVCAEWNFGGFPVWLKYIPGINFR---------TENGPFKAEMHKFTKKIVDMMKAERLFESQGGPI 181 (815)
Q Consensus 112 ~~GL~ViLR~GP-yicaEw~~GG~P~WL~~~p~i~~R---------t~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpI 181 (815)
+.||+||||||| ..|.+|..+++|.||..++.-..| .+++-|++++++ |+++|+ +..+++|++|
T Consensus 79 ~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~----i~~~ir--er~~~~~~~v 152 (673)
T COG1874 79 KAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDR----ILQQIR--ERLYGNGPAV 152 (673)
T ss_pred hcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHH----HHHHHH--HHHhccCCce
Confidence 999999999999 999999999999999987764343 335568777777 555555 2235899999
Q ss_pred EEecccccccCcccccCCCCHHHHHHHHHHHHhc-CCCcceeecC-CCCCCC-ccccCCC-----Cccc--ccCCCCCCC
Q 003498 182 ILSQIENEYGPMEYEIGAPGRSYTRWAAKMAVGL-GTGVPWIMCK-QDDAPD-PLINTCN-----GFYC--DYFSPNKAY 251 (815)
Q Consensus 182 I~~QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~~-g~~vP~~~~~-~~~~p~-~vi~t~n-----g~~~--~~f~~~~p~ 251 (815)
|+|||+||||++.+.++.|...+..||++-+-.+ ..+-+|=+.- ..+..+ ..|.+.+ ...- -+|......
T Consensus 153 ~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~~~~~~~ld~~~f~~e 232 (673)
T COG1874 153 ITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGELPLPGLYLDYRRFESE 232 (673)
T ss_pred eEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccccCCccchhhHhhhhhh
Confidence 9999999999965555667888888888766211 1222321111 000000 0011111 0000 011111111
Q ss_pred C----Cceeeecccccc-cccCCCCCCCC-hHHHHHHHHHHHHhCCeeeeeeeeecCCCCC------CCCCCC---c---
Q 003498 252 K----PKMWTEAWTGWY-TEFGGPVPHRP-VEDLAFSVAKFIQKGGSFINYYMYHGGTNFG------RTAGGP---F--- 313 (815)
Q Consensus 252 ~----P~~~tE~~~GWf-~~wG~~~~~r~-~ed~a~~v~~~~~~g~s~~nyYM~hGGTNFG------~~~G~~---~--- 313 (815)
+ +....|.|-+|| +.|..+.-... .+--++.+++.+....+ -||||+|+|++|+ +.+|+. +
T Consensus 233 ~~~~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~m 311 (673)
T COG1874 233 QILEFVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWLM 311 (673)
T ss_pred hhHHHHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceeec
Confidence 1 556677788888 77766554443 33335566666766655 6999999999999 666653 2
Q ss_pred ----ccccCCCCCCCCcCCCCC
Q 003498 314 ----IATSYDYDAPLDEYGLLR 331 (815)
Q Consensus 314 ----~~TSYDYdAPl~E~G~~~ 331 (815)
..|+|++++.+.+.|.++
T Consensus 312 e~~P~~vn~~~~n~~~~~G~~~ 333 (673)
T COG1874 312 EQLPSVVNWALYNKLKRPGALR 333 (673)
T ss_pred cCCcchhhhhhccCCCCCcccc
Confidence 479999999999999854
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.78 E-value=1.4e-18 Score=193.99 Aligned_cols=263 Identities=21% Similarity=0.279 Sum_probs=158.3
Q ss_pred eCCCCCcccHHHHHHHHHHCCCCEEEE-cccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCceeccccCCCC
Q 003498 55 HYPRSSPEMWPDLIQKAKDGGLDVIQT-YVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGG 133 (815)
Q Consensus 55 Hy~R~~~e~W~d~l~k~Ka~GlN~I~t-yvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~GPyicaEw~~GG 133 (815)
++..++++.|+++|++||++|+|+|++ .+.|+..||+||+|||+ .|+++|++|+++||+|||+.. ...
T Consensus 3 ~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~~~ 71 (374)
T PF02449_consen 3 YPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------TAA 71 (374)
T ss_dssp -GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------TTT
T ss_pred CcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------ccc
Confidence 455678999999999999999999996 67899999999999999 799999999999999999975 567
Q ss_pred CCccccc-CCCeee----------------ecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEecccccccCcccc
Q 003498 134 FPVWLKY-IPGINF----------------RTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYE 196 (815)
Q Consensus 134 ~P~WL~~-~p~i~~----------------Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~ 196 (815)
.|.||.+ .|++.. ..++|.|++++++++++|+++++++ ..||++||+||++...+.
T Consensus 72 ~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~-------p~vi~~~i~NE~~~~~~~ 144 (374)
T PF02449_consen 72 PPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDH-------PAVIGWQIDNEPGYHRCY 144 (374)
T ss_dssp S-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTT-------TTEEEEEECCSTTCTS--
T ss_pred cccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhcccc-------ceEEEEEeccccCcCcCC
Confidence 8999975 576532 1346789999999999998888854 489999999999874221
Q ss_pred cCCCCHHHHHHHHHHHHhc-------CC-------------CcceeecCCC-----------------------------
Q 003498 197 IGAPGRSYTRWAAKMAVGL-------GT-------------GVPWIMCKQD----------------------------- 227 (815)
Q Consensus 197 ~~~~~~~Y~~~l~~~~~~~-------g~-------------~vP~~~~~~~----------------------------- 227 (815)
...+.++|.+||++.+... |. ..|--+....
T Consensus 145 ~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir~ 224 (374)
T PF02449_consen 145 SPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIRE 224 (374)
T ss_dssp SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2236677888888876421 11 1232221000
Q ss_pred CCCCccccCCC--Cc------------ccc-----cC-------C---------------CCCCCCCceeeecccccccc
Q 003498 228 DAPDPLINTCN--GF------------YCD-----YF-------S---------------PNKAYKPKMWTEAWTGWYTE 266 (815)
Q Consensus 228 ~~p~~vi~t~n--g~------------~~~-----~f-------~---------------~~~p~~P~~~tE~~~GWf~~ 266 (815)
..|+-.+ +.| +. .+| .+ . .....+|.+.+|..+| -..
T Consensus 225 ~~p~~~v-t~n~~~~~~~~~d~~~~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g-~~~ 302 (374)
T PF02449_consen 225 YDPDHPV-TTNFMGSWFNGIDYFKWAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPG-PVN 302 (374)
T ss_dssp HSTT-EE-E-EE-TT---SS-HHHHGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S---S
T ss_pred hCCCceE-EeCccccccCcCCHHHHHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCC-CCC
Confidence 0111101 111 00 000 00 0 1136899999999998 666
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhCCeeeeeeeeecCCCCCCCCCCCcccccCCCCCCCCcCCCCCchhHHHHHHHHHHHH
Q 003498 267 FGGPVPHRPVEDLAFSVAKFIQKGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIK 346 (815)
Q Consensus 267 wG~~~~~r~~ed~a~~v~~~~~~g~s~~nyYM~hGGTNFG~~~G~~~~~TSYDYdAPl~E~G~~~~pKy~~lr~l~~~i~ 346 (815)
|+.......++.+...+-.-++.|+..+.|+=+ ..--+|.-.. ..+-|+-+|...+++|.+++++.+.|+
T Consensus 303 ~~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E~~---------~~g~~~~dg~~~~~~~~e~~~~~~~l~ 372 (374)
T PF02449_consen 303 WRPYNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAEQF---------HGGLVDHDGREPTRRYREVAQLGRELK 372 (374)
T ss_dssp SSSS-----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTTTT---------S--SB-TTS--B-HHHHHHHHHHHHHH
T ss_pred CccCCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCchhh---------hcccCCccCCCCCcHHHHHHHHHHHHh
Confidence 766555555666766666678899998887755 2223332211 135688889334799999999988776
Q ss_pred h
Q 003498 347 L 347 (815)
Q Consensus 347 ~ 347 (815)
.
T Consensus 373 ~ 373 (374)
T PF02449_consen 373 K 373 (374)
T ss_dssp T
T ss_pred c
Confidence 4
No 6
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.16 E-value=6.8e-10 Score=120.53 Aligned_cols=193 Identities=20% Similarity=0.264 Sum_probs=125.5
Q ss_pred EEEccCcEEECCeEeEEEEEEeeCCC------CCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHH
Q 003498 33 VSYDSKAIAINGKRRILISGSIHYPR------SSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKF 106 (815)
Q Consensus 33 v~~d~~~~~idG~~~~l~sG~iHy~R------~~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~f 106 (815)
|.+.++.|+|||||++|-+...|... .+++.|..+|+.||++|+|+|++ .|-|. -.+|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~-----~h~p~-----------~~~~ 64 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT-----HHYPP-----------SPRF 64 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE-----TTS-------------SHHH
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc-----ccccC-----------cHHH
Confidence 57889999999999999999999643 47889999999999999999999 56654 2789
Q ss_pred HHHHHHcCCEEEEecCceeccccCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEecc
Q 003498 107 IKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQI 186 (815)
Q Consensus 107 l~la~~~GL~ViLR~GPyicaEw~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QI 186 (815)
+++|.+.||.|+.-+.=.-++.|..-|. ......|+.+.+.+.+-+++++.+.+.|| .||+|=|
T Consensus 65 ~~~cD~~GilV~~e~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~NHP-------SIi~W~~ 128 (298)
T PF02836_consen 65 YDLCDELGILVWQEIPLEGHGSWQDFGN---------CNYDADDPEFRENAEQELREMVRRDRNHP-------SIIMWSL 128 (298)
T ss_dssp HHHHHHHT-EEEEE-S-BSCTSSSSTSC---------TSCTTTSGGHHHHHHHHHHHHHHHHTT-T-------TEEEEEE
T ss_pred HHHHhhcCCEEEEeccccccCccccCCc---------cccCCCCHHHHHHHHHHHHHHHHcCcCcC-------chheeec
Confidence 9999999999997642111222221111 13456789999988888888888887554 8999999
Q ss_pred cccccCcccccCCCCHHHHHHHHHHHHhcCCCcceeecCCC--CCCCccc-cCCCCccc-----ccCC----C--CCCCC
Q 003498 187 ENEYGPMEYEIGAPGRSYTRWAAKMAVGLGTGVPWIMCKQD--DAPDPLI-NTCNGFYC-----DYFS----P--NKAYK 252 (815)
Q Consensus 187 ENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~vP~~~~~~~--~~p~~vi-~t~ng~~~-----~~f~----~--~~p~~ 252 (815)
-||-. ...+++.|.+++++..-.-|....... ...+..+ +...+.+- +.+. . ..+++
T Consensus 129 gNE~~---------~~~~~~~l~~~~k~~DptRpv~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~k 199 (298)
T PF02836_consen 129 GNESD---------YREFLKELYDLVKKLDPTRPVTYASNGWDPYVDDIIFDIYSGWYNGYGDPEDFEKYLEDWYKYPDK 199 (298)
T ss_dssp EESSH---------HHHHHHHHHHHHHHH-TTSEEEEETGTSGGSTSSCEECSETTTSSSCCHHHHHHHHHHHHHHHCTS
T ss_pred CccCc---------cccchhHHHHHHHhcCCCCceeecccccccccccccccccccccCCcccHHHHHHHHHhccccCCC
Confidence 99982 356788899999988877776544331 0111111 11111111 1111 1 35789
Q ss_pred Cceeeecccccccc
Q 003498 253 PKMWTEAWTGWYTE 266 (815)
Q Consensus 253 P~~~tE~~~GWf~~ 266 (815)
|.+.+||....+..
T Consensus 200 P~i~sEyg~~~~~~ 213 (298)
T PF02836_consen 200 PIIISEYGADAYNS 213 (298)
T ss_dssp -EEEEEESEBBSST
T ss_pred CeEehhcccccccc
Confidence 99999997665543
No 7
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.95 E-value=8e-08 Score=114.34 Aligned_cols=159 Identities=18% Similarity=0.107 Sum_probs=112.0
Q ss_pred eeEEEccCcEEECCeEeEEEEEEeeCCC------CCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHH
Q 003498 31 GSVSYDSKAIAINGKRRILISGSIHYPR------SSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLV 104 (815)
Q Consensus 31 ~~v~~d~~~~~idG~~~~l~sG~iHy~R------~~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~ 104 (815)
.+|+++++.|+|||+|+++-+...|... .+++.|..+|+.||++|+|+|++ .|-|. =.
T Consensus 276 R~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~-----sh~p~-----------~~ 339 (604)
T PRK10150 276 RSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRT-----SHYPY-----------SE 339 (604)
T ss_pred EEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEe-----ccCCC-----------CH
Confidence 4578889999999999999999888532 46788999999999999999999 35553 26
Q ss_pred HHHHHHHHcCCEEEEecCceeccccCCCCCCcccc-------c-CCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccc
Q 003498 105 KFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLK-------Y-IPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFES 176 (815)
Q Consensus 105 ~fl~la~~~GL~ViLR~GPyicaEw~~GG~P~WL~-------~-~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~ 176 (815)
+|+++|.++||+|+-.+. .-|+..|+. . .+....-..+|.+.++.++-+++++.+.+
T Consensus 340 ~~~~~cD~~GllV~~E~p--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~------- 404 (604)
T PRK10150 340 EMLDLADRHGIVVIDETP--------AVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRELIARDK------- 404 (604)
T ss_pred HHHHHHHhcCcEEEEecc--------cccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcc-------
Confidence 899999999999997642 112222221 1 11111123456666665555666655555
Q ss_pred CCCceEEecccccccCcccccCCCCHHHHHHHHHHHHhcCCCcceeec
Q 003498 177 QGGPIILSQIENEYGPMEYEIGAPGRSYTRWAAKMAVGLGTGVPWIMC 224 (815)
Q Consensus 177 ~gGpII~~QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~vP~~~~ 224 (815)
|...||||-|-||-... ......|++.+.+.++++.-.-|...+
T Consensus 405 NHPSIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt~~ 448 (604)
T PRK10150 405 NHPSVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVTCV 448 (604)
T ss_pred CCceEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceEEE
Confidence 45699999999996531 123457888888999988877776554
No 8
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.88 E-value=3.4e-09 Score=99.43 Aligned_cols=69 Identities=36% Similarity=0.723 Sum_probs=50.0
Q ss_pred CCCceEEEEEEECCCCCCceE-Eec--CCCceEEEEECCeeccccccccccCCCCCcccccCccccccccCCCCCCceeE
Q 003498 621 RQPLTWYRTTFSAPAGNAPLA-LDM--GSMGKGQVWVNGQSIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRW 697 (815)
Q Consensus 621 ~~~~twYkttF~~p~g~dpv~-Ldl--~g~gKG~~wVNG~niGRYWp~~~~~G~~~~c~y~G~y~~~kc~~~cg~Pqqtl 697 (815)
..+..|||++|..-..+..+. |+. ....+++|||||++|||||+.. | ||+++
T Consensus 33 ~~g~~~Yrg~F~~~~~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~------------g-------------~q~tf 87 (111)
T PF13364_consen 33 HAGYLWYRGTFTGTGQDTSLTPLNIQGGNAFRASVWVNGWFLGSYWPGI------------G-------------PQTTF 87 (111)
T ss_dssp SSCEEEEEEEEETTTEEEEEE-EEECSSTTEEEEEEETTEEEEEEETTT------------E-------------CCEEE
T ss_pred CCCCEEEEEEEeCCCcceeEEEEeccCCCceEEEEEECCEEeeeecCCC------------C-------------ccEEE
Confidence 347899999996422111233 333 4578999999999999999653 4 99998
Q ss_pred EecCCCcccccCcEEEEE
Q 003498 698 YHVPRSWLKPTGNLLVVF 715 (815)
Q Consensus 698 YhVP~~~Lk~g~N~LVvf 715 (815)
+ ||+.+|+.++|.|+|+
T Consensus 88 ~-~p~~il~~~n~v~~vl 104 (111)
T PF13364_consen 88 S-VPAGILKYGNNVLVVL 104 (111)
T ss_dssp E-E-BTTBTTCEEEEEEE
T ss_pred E-eCceeecCCCEEEEEE
Confidence 7 9999999886666554
No 9
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.82 E-value=1.6e-08 Score=94.99 Aligned_cols=84 Identities=20% Similarity=0.319 Sum_probs=59.4
Q ss_pred hhhhcCCCCCCceEEEEEEecCCCCcccccCCCcce-EEec-CcceEEEEEECCEEEEEEecccCCCeeEEEeeee-ccC
Q 003498 463 LEQINTTRDATDYLWYMTDVKIDPSEGFLRSGNYPV-LTVM-SAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVN-MRA 539 (815)
Q Consensus 463 ~Eql~~t~d~sgYlwY~T~v~~~~~~~~~~~g~~~~-L~v~-~~~d~~~vfVNg~~vGs~~g~~~~~~~~~~~~v~-l~~ 539 (815)
.+..+.+++++|++|||++|...+.+. ... |.+. +.+++++|||||+++|+..+..+ ...+|+.|.. |+.
T Consensus 24 ~l~~~~~g~~~g~~~Yrg~F~~~~~~~------~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~g-~q~tf~~p~~il~~ 96 (111)
T PF13364_consen 24 VLYASDYGFHAGYLWYRGTFTGTGQDT------SLTPLNIQGGNAFRASVWVNGWFLGSYWPGIG-PQTTFSVPAGILKY 96 (111)
T ss_dssp STCCGCGTSSSCEEEEEEEEETTTEEE------EEE-EEECSSTTEEEEEEETTEEEEEEETTTE-CCEEEEE-BTTBTT
T ss_pred eeccCccccCCCCEEEEEEEeCCCcce------eEEEEeccCCCceEEEEEECCEEeeeecCCCC-ccEEEEeCceeecC
Confidence 466677788999999999997543331 123 4443 68999999999999999883322 2245555543 666
Q ss_pred CccEEEEEEeccCC
Q 003498 540 GINKIALLSIAVGL 553 (815)
Q Consensus 540 G~n~L~lLven~Gr 553 (815)
++|+|.+|+.+||+
T Consensus 97 ~n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 97 GNNVLVVLWDNMGH 110 (111)
T ss_dssp CEEEEEEEEE-STT
T ss_pred CCEEEEEEEeCCCC
Confidence 77888999999996
No 10
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.77 E-value=1.1e-07 Score=100.78 Aligned_cols=160 Identities=19% Similarity=0.205 Sum_probs=107.3
Q ss_pred CCeEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCccC-CCCce-eeeccchhHHHHHHHHHHcCCEEEEe
Q 003498 43 NGKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHE-PSPGK-YYFEGNYDLVKFIKLAKQAGLYVNLR 120 (815)
Q Consensus 43 dG~~~~l~sG~iHy~R~~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HE-p~~G~-ydF~G~~dL~~fl~la~~~GL~ViLR 120 (815)
+|+++.+.+-+.|+... ..-++.++.||++|+|+|++.|.|...+ |.++. ++=+.-..|+++|+.|+++||+|||.
T Consensus 4 ~G~~v~~~G~n~~w~~~--~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild 81 (281)
T PF00150_consen 4 NGKPVNWRGFNTHWYNP--SITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILD 81 (281)
T ss_dssp TSEBEEEEEEEETTSGG--GSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCeEEeeeeecccCCC--CCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 79999999999993221 2778999999999999999999995544 67764 77666779999999999999999987
Q ss_pred cCceeccccCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEecccccccCcccc--c-
Q 003498 121 IGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYE--I- 197 (815)
Q Consensus 121 ~GPyicaEw~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~--~- 197 (815)
+= + .|.|...... -...+...+....+.+.|+++++ +..+|++++|=||....... .
T Consensus 82 ~h----~------~~~w~~~~~~---~~~~~~~~~~~~~~~~~la~~y~-------~~~~v~~~el~NEP~~~~~~~~w~ 141 (281)
T PF00150_consen 82 LH----N------APGWANGGDG---YGNNDTAQAWFKSFWRALAKRYK-------DNPPVVGWELWNEPNGGNDDANWN 141 (281)
T ss_dssp EE----E------STTCSSSTST---TTTHHHHHHHHHHHHHHHHHHHT-------TTTTTEEEESSSSGCSTTSTTTTS
T ss_pred ec----c------Cccccccccc---cccchhhHHHHHhhhhhhccccC-------CCCcEEEEEecCCccccCCccccc
Confidence 42 1 2677432211 01222333444455556666665 33479999999999874211 0
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCCcceeec
Q 003498 198 ---GAPGRSYTRWAAKMAVGLGTGVPWIMC 224 (815)
Q Consensus 198 ---~~~~~~Y~~~l~~~~~~~g~~vP~~~~ 224 (815)
.+.-.++++.+.+.+|+.+.+.+++.-
T Consensus 142 ~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~ 171 (281)
T PF00150_consen 142 AQNPADWQDWYQRAIDAIRAADPNHLIIVG 171 (281)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTTSSSEEEEE
T ss_pred cccchhhhhHHHHHHHHHHhcCCcceeecC
Confidence 001134555666667777777665553
No 11
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=98.67 E-value=4.1e-07 Score=113.98 Aligned_cols=187 Identities=18% Similarity=0.127 Sum_probs=118.5
Q ss_pred eeEEEccCcEEECCeEeEEEEEEeeCCC------CCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHH
Q 003498 31 GSVSYDSKAIAINGKRRILISGSIHYPR------SSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLV 104 (815)
Q Consensus 31 ~~v~~d~~~~~idG~~~~l~sG~iHy~R------~~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~ 104 (815)
.+|.++++.|+|||+|+++-+...|-.. ++++.|+.+|+.||++|+|+|++ .|-|. =.
T Consensus 318 R~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~-----sHyP~-----------~~ 381 (1021)
T PRK10340 318 RDIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRT-----AHYPN-----------DP 381 (1021)
T ss_pred EEEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCC-----------CH
Confidence 3467788899999999999999988422 47889999999999999999999 35553 26
Q ss_pred HHHHHHHHcCCEEEEecCceeccccCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEe
Q 003498 105 KFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILS 184 (815)
Q Consensus 105 ~fl~la~~~GL~ViLR~GPyicaEw~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~ 184 (815)
+|+++|.++||+|+-.. |..|.-|... .+...-+++|.+.++..+=+++++.+.+ |...||||
T Consensus 382 ~fydlcDe~GllV~dE~-~~e~~g~~~~---------~~~~~~~~~p~~~~~~~~~~~~mV~Rdr-------NHPSIi~W 444 (1021)
T PRK10340 382 RFYELCDIYGLFVMAET-DVESHGFANV---------GDISRITDDPQWEKVYVDRIVRHIHAQK-------NHPSIIIW 444 (1021)
T ss_pred HHHHHHHHCCCEEEECC-cccccCcccc---------cccccccCCHHHHHHHHHHHHHHHHhCC-------CCCEEEEE
Confidence 89999999999999865 3322222110 0111124567666544333444444444 55699999
Q ss_pred cccccccCcccccCCCCHHHHHHHHHHHHhcCCCcceeecCCCCCC--CccccCCCCcc--cccCCCCCCCCCceeeecc
Q 003498 185 QIENEYGPMEYEIGAPGRSYTRWAAKMAVGLGTGVPWIMCKQDDAP--DPLINTCNGFY--CDYFSPNKAYKPKMWTEAW 260 (815)
Q Consensus 185 QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~vP~~~~~~~~~p--~~vi~t~ng~~--~~~f~~~~p~~P~~~tE~~ 260 (815)
=+-||-+. + . .++.+.+.++++.-.-|. ++.+.... -+++...-+.+ +..+....+++|.+.+|+-
T Consensus 445 slGNE~~~-----g---~-~~~~~~~~~k~~DptR~v-~~~~~~~~~~~Dv~~~~Y~~~~~~~~~~~~~~~kP~i~~Ey~ 514 (1021)
T PRK10340 445 SLGNESGY-----G---C-NIRAMYHAAKALDDTRLV-HYEEDRDAEVVDVISTMYTRVELMNEFGEYPHPKPRILCEYA 514 (1021)
T ss_pred ECccCccc-----c---H-HHHHHHHHHHHhCCCceE-EeCCCcCccccceeccccCCHHHHHHHHhCCCCCcEEEEchH
Confidence 99999753 2 1 246777888887766654 33321111 11221110111 1122233457999999984
No 12
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=98.66 E-value=5.1e-07 Score=113.10 Aligned_cols=148 Identities=18% Similarity=0.208 Sum_probs=104.6
Q ss_pred eEEEccCcEEECCeEeEEEEEEeeCC------CCCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHH
Q 003498 32 SVSYDSKAIAINGKRRILISGSIHYP------RSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVK 105 (815)
Q Consensus 32 ~v~~d~~~~~idG~~~~l~sG~iHy~------R~~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~ 105 (815)
+|+++++.|+|||+|+++-+...|-. +++++.++++|+.||++|+|+|++ .|-|. =.+
T Consensus 335 ~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~-----sHyP~-----------~p~ 398 (1027)
T PRK09525 335 KVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC-----SHYPN-----------HPL 398 (1027)
T ss_pred EEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCC-----------CHH
Confidence 46778889999999999999999842 358899999999999999999999 35553 268
Q ss_pred HHHHHHHcCCEEEEecCceeccccCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEec
Q 003498 106 FIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQ 185 (815)
Q Consensus 106 fl~la~~~GL~ViLR~GPyicaEw~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~Q 185 (815)
|+++|.++||+|+-... . | ..|-.|.. . =.+||.|.+++..=+++++.+.+ |...||||=
T Consensus 399 fydlcDe~GilV~dE~~-~---e-~hg~~~~~---~-----~~~dp~~~~~~~~~~~~mV~Rdr-------NHPSIi~WS 458 (1027)
T PRK09525 399 WYELCDRYGLYVVDEAN-I---E-THGMVPMN---R-----LSDDPRWLPAMSERVTRMVQRDR-------NHPSIIIWS 458 (1027)
T ss_pred HHHHHHHcCCEEEEecC-c---c-ccCCcccc---C-----CCCCHHHHHHHHHHHHHHHHhCC-------CCCEEEEEe
Confidence 99999999999997742 1 1 11111210 0 13567777665544445554444 556999999
Q ss_pred ccccccCcccccCCCCHHHHHHHHHHHHhcCCCcceeec
Q 003498 186 IENEYGPMEYEIGAPGRSYTRWAAKMAVGLGTGVPWIMC 224 (815)
Q Consensus 186 IENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~vP~~~~ 224 (815)
+-||-+. + ...+.+.+.++++.-.-|....
T Consensus 459 lgNE~~~-----g----~~~~~l~~~~k~~DptRpV~y~ 488 (1027)
T PRK09525 459 LGNESGH-----G----ANHDALYRWIKSNDPSRPVQYE 488 (1027)
T ss_pred CccCCCc-----C----hhHHHHHHHHHhhCCCCcEEEC
Confidence 9999753 2 2245667777777766666554
No 13
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=98.54 E-value=1.4e-06 Score=106.03 Aligned_cols=120 Identities=21% Similarity=0.287 Sum_probs=96.2
Q ss_pred eeEEEccCcEEECCeEeEEEEEEeeCCC-----CCccc-HHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHH
Q 003498 31 GSVSYDSKAIAINGKRRILISGSIHYPR-----SSPEM-WPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLV 104 (815)
Q Consensus 31 ~~v~~d~~~~~idG~~~~l~sG~iHy~R-----~~~e~-W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~ 104 (815)
.+|+++...|.|||||+++-+..-|.+- ...+. -.++|+.||++|+|+|+| | |-|+ =.
T Consensus 284 R~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRt---s--HyP~-----------~~ 347 (808)
T COG3250 284 RTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRT---S--HYPN-----------SE 347 (808)
T ss_pred EEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEe---c--CCCC-----------CH
Confidence 4588899999999999999999999643 34444 788999999999999999 3 7665 38
Q ss_pred HHHHHHHHcCCEEEEecCceeccccCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEe
Q 003498 105 KFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILS 184 (815)
Q Consensus 105 ~fl~la~~~GL~ViLR~GPyicaEw~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~ 184 (815)
+|++||.+.||+||--+ ..||.. .| +|+.|++.+..=+++++++.|.| ..||||
T Consensus 348 ~~ydLcDelGllV~~Ea----~~~~~~--~~-------------~~~~~~k~~~~~i~~mver~knH-------PSIiiW 401 (808)
T COG3250 348 EFYDLCDELGLLVIDEA----MIETHG--MP-------------DDPEWRKEVSEEVRRMVERDRNH-------PSIIIW 401 (808)
T ss_pred HHHHHHHHhCcEEEEec----chhhcC--CC-------------CCcchhHHHHHHHHHHHHhccCC-------CcEEEE
Confidence 99999999999999873 223322 22 78889888887777777777755 489999
Q ss_pred cccccccC
Q 003498 185 QIENEYGP 192 (815)
Q Consensus 185 QIENEyg~ 192 (815)
=+-||-|.
T Consensus 402 s~gNE~~~ 409 (808)
T COG3250 402 SLGNESGH 409 (808)
T ss_pred eccccccC
Confidence 99999774
No 14
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=98.32 E-value=3.1e-06 Score=83.81 Aligned_cols=100 Identities=25% Similarity=0.330 Sum_probs=72.4
Q ss_pred CCCCCceEEEEEEecCCCCcccccCCCcceEEecCcceEEEEEECCEEEEEEecccCCCeeEEEeeeeccCCc-cEEEEE
Q 003498 469 TRDATDYLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGI-NKIALL 547 (815)
Q Consensus 469 t~d~sgYlwY~T~v~~~~~~~~~~~g~~~~L~v~~~~d~~~vfVNg~~vGs~~g~~~~~~~~~~~~v~l~~G~-n~L~lL 547 (815)
.....++.||+++|.++.+. .+....|.+.++.+.+.|||||+++|...+.. ..+.+..+-.|+.|. |+|+|.
T Consensus 63 ~~~~~~~~wYr~~f~lp~~~----~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~--~~~~~dIt~~l~~g~~N~l~V~ 136 (167)
T PF02837_consen 63 LWDYSGYAWYRRTFTLPADW----KGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY--TPFEFDITDYLKPGEENTLAVR 136 (167)
T ss_dssp TSTCCSEEEEEEEEEESGGG----TTSEEEEEESEEESEEEEEETTEEEEEEESTT--S-EEEECGGGSSSEEEEEEEEE
T ss_pred ccccCceEEEEEEEEeCchh----cCceEEEEeccceEeeEEEeCCeEEeeeCCCc--CCeEEeChhhccCCCCEEEEEE
Confidence 34588999999999886532 24567899999999999999999999987643 356666665688897 999999
Q ss_pred EeccCCccccCCC-CcccccccccEEEc
Q 003498 548 SIAVGLPNVGPHF-ETWNAGVLGPVTLN 574 (815)
Q Consensus 548 ven~Gr~NyG~~~-~~~~kGI~G~V~L~ 574 (815)
+.+..-..+-+.+ .....||.++|.|.
T Consensus 137 v~~~~~~~~~~~~~~~~~~GI~r~V~L~ 164 (167)
T PF02837_consen 137 VDNWPDGSTIPGFDYFNYAGIWRPVWLE 164 (167)
T ss_dssp EESSSGGGCGBSSSEEE--EEESEEEEE
T ss_pred EeecCCCceeecCcCCccCccccEEEEE
Confidence 9865443221111 13568999999874
No 15
>PF02140 Gal_Lectin: Galactose binding lectin domain; InterPro: IPR000922 The D-galactoside binding lectin purified from sea urchin (Anthocidaris crassispina) eggs exists as a disulphide-linked homodimer of two subunits; the dimeric form is essential for hemagglutination activity []. The sea urchin egg lectin (SUEL) forms a new class of lectins. Although SUEL was first isolated as a D-galactoside binding lectin, it was latter shown that it bind to L-rhamnose preferentially [, ]. L-rhamnose and D-galactose share the same hydroxyl group orientation at C2 and C4 of the pyranose ring structure. A cysteine-rich domain homologous to the SUEL protein has been identified in the following proteins [, , ]: Plant beta-galactosidases (3.2.1.23 from EC) (lactases). Mammalian latrophilin, the calcium independent receptor of alpha-latrotoxin (CIRL). The galactose-binding lectin domain is not required for alpha-latratoxin binding []. Human lectomedin-1. Rhamnose-binding lectin (SAL) from catfish (Silurus asotus, Namazu) eggs. This protein is composed of three tandem repeat domains homologous to the SUEL lectin domain. All cysteine positions of each domain are completely conserved []. The hypothetical B0457.1, F32A7.3A and F32A7.3B proteins from Caenorhabditis elegans. The human KIAA0821 protein. ; GO: 0005529 sugar binding; PDB: 2JXA_A 2JX9_A 2ZX2_A 2ZX3_B 2ZX0_B 2ZX1_B 2ZX4_B.
Probab=98.09 E-value=3.3e-06 Score=74.46 Aligned_cols=48 Identities=33% Similarity=0.569 Sum_probs=38.8
Q ss_pred eecCCCCeEeEEEeeecCCCcc-cCCCccccc---cccCchhHHHhhhcCCCC
Q 003498 767 LMCGPGQKIKSIKFASFGTPEG-VCGSYRQGS---CHAFHSYDAFQRVCIFSV 815 (815)
Q Consensus 767 l~C~~g~~is~i~faSfG~p~G-~Cg~~~~g~---c~a~~s~~~v~k~C~gk~ 815 (815)
|+|++| .+..|.+|+||.+.+ .|++...+. |++++++++|+++|.||+
T Consensus 1 L~C~~g-~~I~I~~A~YGR~~~~~C~~~~~~~~~~C~~~~~~~~v~~~C~g~~ 52 (80)
T PF02140_consen 1 LSCPPG-KVISIDSAFYGRTSSSICPSSSSGSNTNCSAPDALSIVKERCNGKQ 52 (80)
T ss_dssp EE-STT-EEEEEEEEEEEBSSSSTT--GGGCS-TTB--TTHHHHHHHHHTTBS
T ss_pred CCCcCC-CEEEEEEeecCCCCCCCCcCCCcCCCCccccccccchhHHhCCCCC
Confidence 799999 778999999999997 998666664 999999999999999985
No 16
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.00 E-value=1.9e-05 Score=84.21 Aligned_cols=116 Identities=23% Similarity=0.347 Sum_probs=88.1
Q ss_pred CCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCceeccccCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHH
Q 003498 85 WNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKI 164 (815)
Q Consensus 85 Wn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~GPyicaEw~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i 164 (815)
|...||++|+|||+ .++++++.|+++||.| |..+-+ |-. ..|.|+...+ .+..++++++|++.+
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v--~gH~l~---W~~-~~P~W~~~~~-------~~~~~~~~~~~i~~v 66 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKV--RGHTLV---WHS-QTPDWVFNLS-------KETLLARLENHIKTV 66 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEE--EEEEEe---ecc-cCCHhhhcCC-------HHHHHHHHHHHHHHH
Confidence 88999999999999 8999999999999998 333333 433 6899997543 345678888888888
Q ss_pred HHHHHhccccccCCCceEEecccccccCccc------cc-CCCCHHHHHHHHHHHHhcCCCcceeecC
Q 003498 165 VDMMKAERLFESQGGPIILSQIENEYGPMEY------EI-GAPGRSYTRWAAKMAVGLGTGVPWIMCK 225 (815)
Q Consensus 165 ~~~l~~~~l~~~~gGpII~~QIENEyg~~~~------~~-~~~~~~Y~~~l~~~~~~~g~~vP~~~~~ 225 (815)
+.+++ |.|..++|=||--+... .+ ...+.+|+...-+.|++..-++.++..+
T Consensus 67 ~~ry~---------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Nd 125 (254)
T smart00633 67 VGRYK---------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYND 125 (254)
T ss_pred HHHhC---------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEec
Confidence 88776 46889999999543210 11 1235689999999999988888888764
No 17
>PLN02705 beta-amylase
Probab=97.93 E-value=2.4e-05 Score=90.55 Aligned_cols=82 Identities=20% Similarity=0.325 Sum_probs=63.1
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCccCC-CCceeeeccchhHHHHHHHHHHcCCEEEEecCceeccccCCC-----CC
Q 003498 61 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-SPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFG-----GF 134 (815)
Q Consensus 61 ~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp-~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~GPyicaEw~~G-----G~ 134 (815)
++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..+++++++++||++..-.-=--|+- +-| -|
T Consensus 267 ~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSFHqCGG-NVGD~~~IPL 342 (681)
T PLN02705 267 PEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAFHEYGG-NASGNVMISL 342 (681)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEeeccCC-CCCCcccccC
Confidence 344677899999999999999999999998 699999997 67779999999999543322223444 222 38
Q ss_pred Cccccc----CCCeee
Q 003498 135 PVWLKY----IPGINF 146 (815)
Q Consensus 135 P~WL~~----~p~i~~ 146 (815)
|.|+.+ +|+|.+
T Consensus 343 P~WV~e~g~~nPDiff 358 (681)
T PLN02705 343 PQWVLEIGKDNQDIFF 358 (681)
T ss_pred CHHHHHhcccCCCcee
Confidence 999985 577644
No 18
>PLN02905 beta-amylase
Probab=97.93 E-value=2.8e-05 Score=90.16 Aligned_cols=112 Identities=19% Similarity=0.385 Sum_probs=79.5
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCccCC-CCceeeeccchhHHHHHHHHHHcCCEEEEecCceeccccCCC-----CCCc
Q 003498 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEP-SPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFG-----GFPV 136 (815)
Q Consensus 63 ~W~d~l~k~Ka~GlN~I~tyvfWn~HEp-~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~GPyicaEw~~G-----G~P~ 136 (815)
.-...|+++|++|++.|.+-|.|.+.|. .|++|||+| ..+++++++++||++..-.-=--|+- +-| -||.
T Consensus 287 al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSFHqCGG-NVGD~~~IPLP~ 362 (702)
T PLN02905 287 GLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSFHECGG-NVGDDVCIPLPH 362 (702)
T ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCcccccCCH
Confidence 3566899999999999999999999998 799999996 67779999999999553322223433 222 3899
Q ss_pred cccc----CCCeeee------------------------cCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEecc
Q 003498 137 WLKY----IPGINFR------------------------TENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQI 186 (815)
Q Consensus 137 WL~~----~p~i~~R------------------------t~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QI 186 (815)
|+.+ +|+|.+- |.-+.|.+.|+.|-....+.|. +|-|.-|||
T Consensus 363 WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~--------~g~I~eI~V 432 (702)
T PLN02905 363 WVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFFE--------DGVISMVEV 432 (702)
T ss_pred HHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHhc--------CCceEEEEe
Confidence 9975 5777441 1113466666666555444442 367888887
No 19
>PLN02161 beta-amylase
Probab=97.88 E-value=4.1e-05 Score=87.45 Aligned_cols=81 Identities=21% Similarity=0.377 Sum_probs=62.1
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCC-CCceeeeccchhHHHHHHHHHHcCCEEEEecCceeccccCCC-----CCC
Q 003498 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEP-SPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFG-----GFP 135 (815)
Q Consensus 62 e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp-~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~GPyicaEw~~G-----G~P 135 (815)
+.-...|+++|++|++.|.+-|.|.+.|. .|++|||+| ..+++++++++||+++.-.-=--|+- +-| -||
T Consensus 117 ~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NvGd~~~IpLP 192 (531)
T PLN02161 117 KALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCFHSNMH-LFGGKGGISLP 192 (531)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccCccCC
Confidence 34567899999999999999999999998 799999996 67779999999999553322223332 222 289
Q ss_pred ccccc----CCCeee
Q 003498 136 VWLKY----IPGINF 146 (815)
Q Consensus 136 ~WL~~----~p~i~~ 146 (815)
.|+.+ +|+|.+
T Consensus 193 ~WV~~~g~~~pDi~f 207 (531)
T PLN02161 193 LWIREIGDVNKDIYY 207 (531)
T ss_pred HHHHhhhccCCCceE
Confidence 99985 577754
No 20
>PLN02801 beta-amylase
Probab=97.87 E-value=3.8e-05 Score=87.74 Aligned_cols=83 Identities=23% Similarity=0.478 Sum_probs=63.5
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCC-CCceeeeccchhHHHHHHHHHHcCCEEEEecCceeccccCCC-----C
Q 003498 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-SPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFG-----G 133 (815)
Q Consensus 60 ~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp-~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~GPyicaEw~~G-----G 133 (815)
.++.-+..|+++|++|++.|.+.|.|.+.|. .|++|||+| ..+++++++++||++..-.-=--|+- +-| -
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NVGD~~~Ip 110 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSFHQCGG-NVGDAVNIP 110 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccccc
Confidence 3555788999999999999999999999998 699999996 67779999999999543322222333 212 3
Q ss_pred CCccccc----CCCeee
Q 003498 134 FPVWLKY----IPGINF 146 (815)
Q Consensus 134 ~P~WL~~----~p~i~~ 146 (815)
||.|+.+ +|+|.+
T Consensus 111 LP~WV~~~g~~~pDi~f 127 (517)
T PLN02801 111 IPQWVRDVGDSDPDIFY 127 (517)
T ss_pred CCHHHHHhhccCCCcee
Confidence 8999975 577643
No 21
>PLN00197 beta-amylase; Provisional
Probab=97.87 E-value=3.9e-05 Score=88.27 Aligned_cols=82 Identities=28% Similarity=0.527 Sum_probs=63.6
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCccCC-CCceeeeccchhHHHHHHHHHHcCCEEEEecCceeccccCCC-----CC
Q 003498 61 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-SPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFG-----GF 134 (815)
Q Consensus 61 ~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp-~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~GPyicaEw~~G-----G~ 134 (815)
++.-...|+++|++|++.|.+-|.|.+.|. .|++|||+| ..+++++++++||++..-.-=--|+- +-| -|
T Consensus 126 ~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSFHqCGG-NVGD~~~IpL 201 (573)
T PLN00197 126 RKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSFHQCGG-NVGDSCTIPL 201 (573)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCcccccC
Confidence 445688999999999999999999999998 799999997 67779999999999553322223433 222 38
Q ss_pred Cccccc----CCCeee
Q 003498 135 PVWLKY----IPGINF 146 (815)
Q Consensus 135 P~WL~~----~p~i~~ 146 (815)
|.|+.+ +|+|.+
T Consensus 202 P~WV~~~g~~dpDiff 217 (573)
T PLN00197 202 PKWVVEEVDKDPDLAY 217 (573)
T ss_pred CHHHHHhhccCCCcee
Confidence 999975 577744
No 22
>PLN02803 beta-amylase
Probab=97.83 E-value=5e-05 Score=87.15 Aligned_cols=81 Identities=20% Similarity=0.487 Sum_probs=62.3
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCC-CCceeeeccchhHHHHHHHHHHcCCEEEEecCceeccccCCC-----CCC
Q 003498 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEP-SPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFG-----GFP 135 (815)
Q Consensus 62 e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp-~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~GPyicaEw~~G-----G~P 135 (815)
+.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..+++++++++||++..-.-=--|+- |-| -||
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NVGD~~~IpLP 182 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSFHQCGG-NVGDSCSIPLP 182 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCcccccCC
Confidence 34567899999999999999999999998 599999997 67779999999999553322223433 222 289
Q ss_pred ccccc----CCCeee
Q 003498 136 VWLKY----IPGINF 146 (815)
Q Consensus 136 ~WL~~----~p~i~~ 146 (815)
.|+.+ +|+|.+
T Consensus 183 ~WV~e~~~~~pDi~f 197 (548)
T PLN02803 183 PWVLEEMSKNPDLVY 197 (548)
T ss_pred HHHHHhhhcCCCceE
Confidence 99975 577754
No 23
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=97.72 E-value=0.00037 Score=76.07 Aligned_cols=152 Identities=14% Similarity=0.169 Sum_probs=84.5
Q ss_pred ceeEEEccCcEE--ECCeEeEEEEEEeeCCC-----------CCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceee
Q 003498 30 EGSVSYDSKAIA--INGKRRILISGSIHYPR-----------SSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYY 96 (815)
Q Consensus 30 ~~~v~~d~~~~~--idG~~~~l~sG~iHy~R-----------~~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~yd 96 (815)
-..|+..++.|+ .+|++|+|.+-..-+.. ..++.|..++..||++|+|||++|-.
T Consensus 8 ~~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~v------------ 75 (314)
T PF03198_consen 8 VPPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSV------------ 75 (314)
T ss_dssp S--EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES--------------
T ss_pred CCCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEe------------
Confidence 355888899998 79999998876655422 24678999999999999999999732
Q ss_pred eccchhHHHHHHHHHHcCCEEEEecCceeccccCCCCCCcccccCCCeeeecCCh--hhHHHHHHHHHHHHHHHHhcccc
Q 003498 97 FEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENG--PFKAEMHKFTKKIVDMMKAERLF 174 (815)
Q Consensus 97 F~G~~dL~~fl~la~~~GL~ViLR~GPyicaEw~~GG~P~WL~~~p~i~~Rt~d~--~y~~~~~~~~~~i~~~l~~~~l~ 174 (815)
+-..|-++++++.+++|+||||-.+. |+..+-..+| .|-...-.-+.++++.++.++
T Consensus 76 -dp~~nHd~CM~~~~~aGIYvi~Dl~~------------------p~~sI~r~~P~~sw~~~l~~~~~~vid~fa~Y~-- 134 (314)
T PF03198_consen 76 -DPSKNHDECMSAFADAGIYVILDLNT------------------PNGSINRSDPAPSWNTDLLDRYFAVIDAFAKYD-- 134 (314)
T ss_dssp --TTS--HHHHHHHHHTT-EEEEES-B------------------TTBS--TTS------HHHHHHHHHHHHHHTT-T--
T ss_pred -CCCCCHHHHHHHHHhCCCEEEEecCC------------------CCccccCCCCcCCCCHHHHHHHHHHHHHhccCC--
Confidence 22347799999999999999998642 3333444455 453333333445677777554
Q ss_pred ccCCCceEEecccccccCcccccCCCCHHHHHH----HHHHHHhcCC-Ccce
Q 003498 175 ESQGGPIILSQIENEYGPMEYEIGAPGRSYTRW----AAKMAVGLGT-GVPW 221 (815)
Q Consensus 175 ~~~gGpII~~QIENEyg~~~~~~~~~~~~Y~~~----l~~~~~~~g~-~vP~ 221 (815)
++++.=+-||--+-.. ......|++. +++-.++.+. .+|+
T Consensus 135 -----N~LgFf~GNEVin~~~--~t~aap~vKAavRD~K~Yi~~~~~R~IPV 179 (314)
T PF03198_consen 135 -----NTLGFFAGNEVINDAS--NTNAAPYVKAAVRDMKAYIKSKGYRSIPV 179 (314)
T ss_dssp -----TEEEEEEEESSS-STT---GGGHHHHHHHHHHHHHHHHHSSS----E
T ss_pred -----ceEEEEecceeecCCC--CcccHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 8999999999865321 1124445544 3444444444 3453
No 24
>TIGR03356 BGL beta-galactosidase.
Probab=97.68 E-value=9.2e-05 Score=84.98 Aligned_cols=97 Identities=13% Similarity=0.140 Sum_probs=80.8
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCC-CceeeeccchhHHHHHHHHHHcCCEEEEecCceeccccCCCCCCccccc
Q 003498 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKY 140 (815)
Q Consensus 62 e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~-~G~ydF~G~~dL~~fl~la~~~GL~ViLR~GPyicaEw~~GG~P~WL~~ 140 (815)
..|+++|+.||++|+|++++-|.|...+|. +|++|.+|-...+++|+.+.++||.+|+-. -+=.+|.||.+
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL--------~Hfd~P~~l~~ 125 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTL--------YHWDLPQALED 125 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEee--------ccCCccHHHHh
Confidence 468999999999999999999999999999 799999998999999999999999988653 12358999986
Q ss_pred CCCeeeecCChhhHHHHHHHHHHHHHHHHh
Q 003498 141 IPGINFRTENGPFKAEMHKFTKKIVDMMKA 170 (815)
Q Consensus 141 ~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~ 170 (815)
..|- .++...++..+|.+.+++++++
T Consensus 126 ~gGw----~~~~~~~~f~~ya~~~~~~~~d 151 (427)
T TIGR03356 126 RGGW----LNRDTAEWFAEYAAVVAERLGD 151 (427)
T ss_pred cCCC----CChHHHHHHHHHHHHHHHHhCC
Confidence 5543 3466677777788888877774
No 25
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.60 E-value=0.0011 Score=72.54 Aligned_cols=224 Identities=23% Similarity=0.326 Sum_probs=113.9
Q ss_pred cCcEE-ECCeEeEEEEEEeeC---CCCCcccHHHHHHHHHHCCCCEEEEccc--CCcc--------CC----CCceeeec
Q 003498 37 SKAIA-INGKRRILISGSIHY---PRSSPEMWPDLIQKAKDGGLDVIQTYVF--WNGH--------EP----SPGKYYFE 98 (815)
Q Consensus 37 ~~~~~-idG~~~~l~sG~iHy---~R~~~e~W~d~l~k~Ka~GlN~I~tyvf--Wn~H--------Ep----~~G~ydF~ 98 (815)
++.|. -||+||+.++ .-.| .|...+.|+.-|+..|+-|+|+|++=|+ |..+ .| .++++||+
T Consensus 2 ~r~f~~~dG~Pff~lg-dT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~ 80 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLG-DTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFT 80 (289)
T ss_dssp SSSEEETTS-B--EEE-EE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------T
T ss_pred CceEecCCCCEEeehh-HHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCC
Confidence 56676 7999999998 5555 3568899999999999999999998766 4322 12 12336776
Q ss_pred cc-----hhHHHHHHHHHHcCCEEEEe---cCceeccccCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHh
Q 003498 99 GN-----YDLVKFIKLAKQAGLYVNLR---IGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKA 170 (815)
Q Consensus 99 G~-----~dL~~fl~la~~~GL~ViLR---~GPyicaEw~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~ 170 (815)
.- ..|++-|++|.+.||.+.|- -+||+-+-|-+| | ..| =.+.+++|.+.|++++++
T Consensus 81 ~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~--~------~~m--------~~e~~~~Y~~yv~~Ry~~ 144 (289)
T PF13204_consen 81 RPNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG--P------NIM--------PPENAERYGRYVVARYGA 144 (289)
T ss_dssp T----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH---------T------TSS---------HHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc--c------cCC--------CHHHHHHHHHHHHHHHhc
Confidence 53 47999999999999997643 234443444333 1 111 136788999999999996
Q ss_pred ccccccCCCceEEecccccccCcccccCCCCHHHHHHHHHHHHhcCCCcceeecCC-C--CCCC-----cc--ccCC-CC
Q 003498 171 ERLFESQGGPIILSQIENEYGPMEYEIGAPGRSYTRWAAKMAVGLGTGVPWIMCKQ-D--DAPD-----PL--INTC-NG 239 (815)
Q Consensus 171 ~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~vP~~~~~~-~--~~p~-----~v--i~t~-ng 239 (815)
.+ +|| +=|-||+ . ......++.+.+.+.+++..-.- +++.-. . ..++ +- +... .|
T Consensus 145 ~~-------Nvi-W~l~gd~-~----~~~~~~~~w~~~~~~i~~~dp~~-L~T~H~~~~~~~~~~~~~~~Wldf~~~Qsg 210 (289)
T PF13204_consen 145 YP-------NVI-WILGGDY-F----DTEKTRADWDAMARGIKENDPYQ-LITIHPCGRTSSPDWFHDEPWLDFNMYQSG 210 (289)
T ss_dssp -S-------SEE-EEEESSS-------TTSSHHHHHHHHHHHHHH--SS--EEEEE-BTEBTHHHHTT-TT--SEEEB--
T ss_pred CC-------CCE-EEecCcc-C----CCCcCHHHHHHHHHHHHhhCCCC-cEEEeCCCCCCcchhhcCCCcceEEEeecC
Confidence 53 455 5588998 1 23467888888888888764432 333211 1 0110 00 1111 12
Q ss_pred ccc---c-------cCC-CCCCCCCceeeec-ccccccccCCCCCCCChHHHHHHHHHHHHhCC
Q 003498 240 FYC---D-------YFS-PNKAYKPKMWTEA-WTGWYTEFGGPVPHRPVEDLAFSVAKFIQKGG 291 (815)
Q Consensus 240 ~~~---~-------~f~-~~~p~~P~~~tE~-~~GWf~~wG~~~~~r~~ed~a~~v~~~~~~g~ 291 (815)
... + .+. ...|.||.+..|- |.|--..+.......+++|+....=+-+-+|+
T Consensus 211 h~~~~~~~~~~~~~~~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa 274 (289)
T PF13204_consen 211 HNRYDQDNWYYLPEEFDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA 274 (289)
T ss_dssp S--TT--THHHH--HHHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT-
T ss_pred CCcccchHHHHHhhhhhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC
Confidence 111 0 111 4568999999994 44544333333345678888665544455565
No 26
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.43 E-value=0.00016 Score=81.37 Aligned_cols=114 Identities=18% Similarity=0.300 Sum_probs=70.8
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCccCCC-CceeeeccchhHHHHHHHHHHcCCEEEEecCceeccc----cCCCCCCcc
Q 003498 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAE----WNFGGFPVW 137 (815)
Q Consensus 63 ~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~-~G~ydF~G~~dL~~fl~la~~~GL~ViLR~GPyicaE----w~~GG~P~W 137 (815)
.-+..|+++|++|++.|.+.|.|.+.|.. |++|||+| ..++.++++++||+++.-.-=--|+- .-+=-||.|
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP~W 93 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSG---YRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLPSW 93 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HH---HHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-HH
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCCHH
Confidence 34678999999999999999999999997 99999996 77889999999999654321122321 111138999
Q ss_pred ccc---CCCeeeecC--------------ChhhHHHHHHHHHHHHHHHHhccccccCCCceEEecc
Q 003498 138 LKY---IPGINFRTE--------------NGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQI 186 (815)
Q Consensus 138 L~~---~p~i~~Rt~--------------d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QI 186 (815)
+.+ ..+|.+... ... ++.-+.|++.....++ +++ +-|..+||
T Consensus 94 v~~~~~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~--~~~----~~I~~I~v 152 (402)
T PF01373_consen 94 VWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFS--DYL----STITEIQV 152 (402)
T ss_dssp HHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCH--HHH----TGEEEEEE
T ss_pred HHhccccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHH--HHH----hhheEEEe
Confidence 974 225533111 111 4444555555555665 332 57877776
No 27
>PRK10150 beta-D-glucuronidase; Provisional
Probab=96.90 E-value=0.005 Score=73.83 Aligned_cols=100 Identities=24% Similarity=0.196 Sum_probs=70.4
Q ss_pred CCCceEEEEEEecCCCCcccccCCCcceEEecCcceEEEEEECCEEEEEEecccCCCeeEEEeeeeccCCc-cEEEEEEe
Q 003498 471 DATDYLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGI-NKIALLSI 549 (815)
Q Consensus 471 d~sgYlwY~T~v~~~~~~~~~~~g~~~~L~v~~~~d~~~vfVNg~~vGs~~g~~~~~~~~~~~~v~l~~G~-n~L~lLve 549 (815)
+..|..||+++|.++... .+....|+++++...+.|||||++||...+.. ..+.|.++-.|+.|. |+|.|.|.
T Consensus 62 ~~~G~~WYrr~f~lp~~~----~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~~--~~f~~DIT~~l~~G~~n~L~V~v~ 135 (604)
T PRK10150 62 NYVGDVWYQREVFIPKGW----AGQRIVLRFGSVTHYAKVWVNGQEVMEHKGGY--TPFEADITPYVYAGKSVRITVCVN 135 (604)
T ss_pred CCcccEEEEEEEECCccc----CCCEEEEEECcccceEEEEECCEEeeeEcCCc--cceEEeCchhccCCCceEEEEEEe
Confidence 467899999999986431 34567899999999999999999999987643 346666554577785 49999997
Q ss_pred ccCCc---cccCCC-------------C-cccccccccEEEccc
Q 003498 550 AVGLP---NVGPHF-------------E-TWNAGVLGPVTLNGL 576 (815)
Q Consensus 550 n~Gr~---NyG~~~-------------~-~~~kGI~G~V~L~g~ 576 (815)
+.-.. ..|... + ....||..+|.|...
T Consensus 136 n~~~~~~~p~g~~~~~~~~~~k~~~~~d~~~~~GI~r~V~L~~~ 179 (604)
T PRK10150 136 NELNWQTLPPGNVIEDGNGKKKQKYNFDFFNYAGIHRPVMLYTT 179 (604)
T ss_pred cCCCcccCCCCccccCCccccccccccccccccCCCceEEEEEc
Confidence 64211 011110 0 236899999999544
No 28
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.76 E-value=0.0013 Score=76.15 Aligned_cols=97 Identities=16% Similarity=0.219 Sum_probs=75.0
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCC--CceeeeccchhHHHHHHHHHHcCCEEEEecCceeccccCCCCCCcccc
Q 003498 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS--PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLK 139 (815)
Q Consensus 62 e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~--~G~ydF~G~~dL~~fl~la~~~GL~ViLR~GPyicaEw~~GG~P~WL~ 139 (815)
..|+++|+.||++|+|+-++-+-|...+|. +|++|-+|....+++|+.+.++||..++-. -+-.+|.||.
T Consensus 58 ~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~~l~ 129 (455)
T PF00232_consen 58 HRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL--------YHFDLPLWLE 129 (455)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--------ESS--BHHHH
T ss_pred hhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--------eeccccccee
Confidence 458999999999999999999999999999 699999999999999999999999966542 3567999998
Q ss_pred cCCCeeeecCChhhHHHHHHHHHHHHHHHHh
Q 003498 140 YIPGINFRTENGPFKAEMHKFTKKIVDMMKA 170 (815)
Q Consensus 140 ~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~ 170 (815)
+.-|- .|+...+...+|.+.+++.+.+
T Consensus 130 ~~ggw----~~~~~~~~F~~Ya~~~~~~~gd 156 (455)
T PF00232_consen 130 DYGGW----LNRETVDWFARYAEFVFERFGD 156 (455)
T ss_dssp HHTGG----GSTHHHHHHHHHHHHHHHHHTT
T ss_pred ecccc----cCHHHHHHHHHHHHHHHHHhCC
Confidence 75442 2466777778888888888874
No 29
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=96.74 E-value=0.0022 Score=63.45 Aligned_cols=67 Identities=31% Similarity=0.533 Sum_probs=50.9
Q ss_pred CCCceEEEEEEECCCCC--CceEEecCCC-ceEEEEECCeeccccccccccCCCCCcccccCccccccccCCCCCCceeE
Q 003498 621 RQPLTWYRTTFSAPAGN--APLALDMGSM-GKGQVWVNGQSIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRW 697 (815)
Q Consensus 621 ~~~~twYkttF~~p~g~--dpv~Ldl~g~-gKG~~wVNG~niGRYWp~~~~~G~~~~c~y~G~y~~~kc~~~cg~Pqqtl 697 (815)
.....|||++|++|... ..++|.+.|. ....|||||+-||+-.-.+ .. .-
T Consensus 66 ~~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~--------------------------~~-~~ 118 (167)
T PF02837_consen 66 YSGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY--------------------------TP-FE 118 (167)
T ss_dssp CCSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEESTT--------------------------S--EE
T ss_pred cCceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCCCc--------------------------CC-eE
Confidence 34679999999999743 4689999987 5899999999999865211 22 23
Q ss_pred EecCCCcccccC-cEEEEE
Q 003498 698 YHVPRSWLKPTG-NLLVVF 715 (815)
Q Consensus 698 YhVP~~~Lk~g~-N~LVvf 715 (815)
|.|+. .|++|+ |+|.|.
T Consensus 119 ~dIt~-~l~~g~~N~l~V~ 136 (167)
T PF02837_consen 119 FDITD-YLKPGEENTLAVR 136 (167)
T ss_dssp EECGG-GSSSEEEEEEEEE
T ss_pred EeChh-hccCCCCEEEEEE
Confidence 66865 799988 998873
No 30
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=96.70 E-value=0.0022 Score=71.05 Aligned_cols=156 Identities=18% Similarity=0.294 Sum_probs=107.8
Q ss_pred EEEEEeeCCCCCcc-cHHHHHHHHHHCCCCEEEEc--ccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCcee
Q 003498 49 LISGSIHYPRSSPE-MWPDLIQKAKDGGLDVIQTY--VFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYV 125 (815)
Q Consensus 49 l~sG~iHy~R~~~e-~W~d~l~k~Ka~GlN~I~ty--vfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~GPyi 125 (815)
.++..++..+...+ ..++.+. .-+|.|..- .-|...||++|+|||+ ..+++++.|+++||.|--. +-+
T Consensus 11 ~~G~av~~~~~~~~~~~~~~~~----~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH--~Lv 81 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDPRYRELFA----KHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGH--TLV 81 (320)
T ss_dssp EEEEEEBGGGHTHHHHHHHHHH----HH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEE--EEE
T ss_pred CEEEEechhHcCCcHHHHHHHH----HhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeee--eEE
Confidence 68888888776554 4444443 458888764 6699999999999999 8999999999999997633 111
Q ss_pred ccccCCCCCCcccccCCCeeeecC-ChhhHHHHHHHHHHHHHHHHhccccccCCCceEEecccccccCccc---------
Q 003498 126 CAEWNFGGFPVWLKYIPGINFRTE-NGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEY--------- 195 (815)
Q Consensus 126 caEw~~GG~P~WL~~~p~i~~Rt~-d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~--------- 195 (815)
|.. ..|.|+...+.. ... -+..++.++++++.++.++++. |.|..|-|=||-=.-..
T Consensus 82 ---W~~-~~P~w~~~~~~~--~~~~~~~~~~~l~~~I~~v~~~y~~~-------g~i~~WDVvNE~i~~~~~~~~~r~~~ 148 (320)
T PF00331_consen 82 ---WHS-QTPDWVFNLANG--SPDEKEELRARLENHIKTVVTRYKDK-------GRIYAWDVVNEAIDDDGNPGGLRDSP 148 (320)
T ss_dssp ---ESS-SS-HHHHTSTTS--SBHHHHHHHHHHHHHHHHHHHHTTTT-------TTESEEEEEES-B-TTSSSSSBCTSH
T ss_pred ---Ecc-cccceeeeccCC--CcccHHHHHHHHHHHHHHHHhHhccc-------cceEEEEEeeecccCCCccccccCCh
Confidence 544 789999875110 000 1247888899999988887722 78999999999643211
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCCcceeecCC
Q 003498 196 EIGAPGRSYTRWAAKMAVGLGTGVPWIMCKQ 226 (815)
Q Consensus 196 ~~~~~~~~Y~~~l~~~~~~~g~~vP~~~~~~ 226 (815)
-|...+.+|+..+-++|++...++.++.++-
T Consensus 149 ~~~~lG~~yi~~aF~~A~~~~P~a~L~~NDy 179 (320)
T PF00331_consen 149 WYDALGPDYIADAFRAAREADPNAKLFYNDY 179 (320)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTSEEEEEES
T ss_pred hhhcccHhHHHHHHHHHHHhCCCcEEEeccc
Confidence 1222357899999999998888888888764
No 31
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=96.67 E-value=0.0059 Score=77.35 Aligned_cols=94 Identities=21% Similarity=0.291 Sum_probs=69.0
Q ss_pred ceEEEEEEecCCCCcccccCCCcceEEecCcceEEEEEECCEEEEEEecccCCCeeEEEeeeeccCCccEEEEEEeccCC
Q 003498 474 DYLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGINKIALLSIAVGL 553 (815)
Q Consensus 474 gYlwY~T~v~~~~~~~~~~~g~~~~L~v~~~~d~~~vfVNg~~vGs~~g~~~~~~~~~~~~v~l~~G~n~L~lLven~Gr 553 (815)
+-.|||++|.++..- .|....|+++++...+.|||||++||...+.. ..+.|.+.--|+.|.|+|+|.|.+..
T Consensus 109 ~~g~Yrr~F~lp~~~----~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~LaV~V~~~~- 181 (1021)
T PRK10340 109 PTGAYQRTFTLSDGW----QGKQTIIKFDGVETYFEVYVNGQYVGFSKGSR--LTAEFDISAMVKTGDNLLCVRVMQWA- 181 (1021)
T ss_pred CeEEEEEEEEeCccc----ccCcEEEEECccceEEEEEECCEEeccccCCC--ccEEEEcchhhCCCccEEEEEEEecC-
Confidence 567999999986532 34567899999999999999999999876543 34566655457889999999987432
Q ss_pred ccccCCCCc----ccccccccEEEccc
Q 003498 554 PNVGPHFET----WNAGVLGPVTLNGL 576 (815)
Q Consensus 554 ~NyG~~~~~----~~kGI~G~V~L~g~ 576 (815)
.|.+++. ...||..+|.|.-.
T Consensus 182 --d~s~le~qd~w~~sGI~R~V~L~~~ 206 (1021)
T PRK10340 182 --DSTYLEDQDMWWLAGIFRDVYLVGK 206 (1021)
T ss_pred --CCCccccCCccccccccceEEEEEe
Confidence 2333332 34899999998544
No 32
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=96.53 E-value=0.0087 Score=66.65 Aligned_cols=104 Identities=30% Similarity=0.468 Sum_probs=67.5
Q ss_pred HHHHHHHHHCCCCEEEEcccCCccCCCC-ceeeeccchhHHHHHHHHHHcCCEEEEecCceeccccCCCCCCcccccCCC
Q 003498 65 PDLIQKAKDGGLDVIQTYVFWNGHEPSP-GKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPG 143 (815)
Q Consensus 65 ~d~l~k~Ka~GlN~I~tyvfWn~HEp~~-G~ydF~G~~dL~~fl~la~~~GL~ViLR~GPyicaEw~~GG~P~WL~~~p~ 143 (815)
.|.++-+|+.|+|.|+.=| |+ .|.. |..|.+ +..+..+.|+++||.|+|-+- |- -.|- +|+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv--~P~~~g~~~~~---~~~~~akrak~~Gm~vlldfH-YS---------D~Wa--DPg 88 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WV--NPYDGGYNDLE---DVIALAKRAKAAGMKVLLDFH-YS---------DFWA--DPG 88 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--S--S-TTTTTTSHH---HHHHHHHHHHHTT-EEEEEE--SS---------SS----BTT
T ss_pred CCHHHHHHhcCCCeEEEEe-cc--CCcccccCCHH---HHHHHHHHHHHCCCeEEEeec-cc---------CCCC--CCC
Confidence 5899999999999999987 54 4555 666666 677777778899999999853 11 1222 343
Q ss_pred eeee-----c-CChhhHHHHHHHHHHHHHHHHhccccccCCCceEEecccccccC
Q 003498 144 INFR-----T-ENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGP 192 (815)
Q Consensus 144 i~~R-----t-~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~ 192 (815)
-+.. . +-..-.+++..|++.++..|+++ |=.+=||||-||..+
T Consensus 89 ~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~------G~~pd~VQVGNEin~ 137 (332)
T PF07745_consen 89 KQNKPAAWANLSFDQLAKAVYDYTKDVLQALKAA------GVTPDMVQVGNEINN 137 (332)
T ss_dssp B-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHT------T--ESEEEESSSGGG
T ss_pred CCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCccEEEeCccccc
Confidence 2221 1 23567789999999999999954 557789999999753
No 33
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.39 E-value=0.023 Score=62.31 Aligned_cols=133 Identities=18% Similarity=0.277 Sum_probs=100.9
Q ss_pred HHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCceeccccCCCCCCcccccCCCeeeecCC
Q 003498 71 AKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTEN 150 (815)
Q Consensus 71 ~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~GPyicaEw~~GG~P~WL~~~p~i~~Rt~d 150 (815)
+|+.+.=|-+.=.=|+..||++|.|+|+ --++..+.|+++||.+. -=+.| |.+ -.|.||..+. -+-
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~lh--GHtLv---W~~-q~P~W~~~~e-----~~~ 120 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFE---AADAIANFARKHNMPLH--GHTLV---WHS-QVPDWLFGDE-----LSK 120 (345)
T ss_pred HhhhcccccccccccccccCCCCccCcc---chHHHHHHHHHcCCeec--cceee---ecc-cCCchhhccc-----cCh
Confidence 5666665666667799999999999999 57899999999999654 22223 544 6899997633 234
Q ss_pred hhhHHHHHHHHHHHHHHHHhccccccCCCceEEecccccccCcc----cc---cCCCCHHHHHHHHHHHHhcCCCcceee
Q 003498 151 GPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPME----YE---IGAPGRSYTRWAAKMAVGLGTGVPWIM 223 (815)
Q Consensus 151 ~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~----~~---~~~~~~~Y~~~l~~~~~~~g~~vP~~~ 223 (815)
++..+.|++++..++.+.+ |-|+.|-|=||-=.-. ++ .+-.+.+||++.-+.|++.+-+--++.
T Consensus 121 ~~~~~~~e~hI~tV~~rYk---------g~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ 191 (345)
T COG3693 121 EALAKMVEEHIKTVVGRYK---------GSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVI 191 (345)
T ss_pred HHHHHHHHHHHHHHHHhcc---------CceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEe
Confidence 7889999999999999998 3589999999974321 11 224788999999999999877766777
Q ss_pred cCC
Q 003498 224 CKQ 226 (815)
Q Consensus 224 ~~~ 226 (815)
++-
T Consensus 192 NDY 194 (345)
T COG3693 192 NDY 194 (345)
T ss_pred ecc
Confidence 664
No 34
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=96.26 E-value=0.012 Score=68.75 Aligned_cols=97 Identities=12% Similarity=0.107 Sum_probs=78.1
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCC--CceeeeccchhHHHHHHHHHHcCCEEEEecCceeccccCCCCCCcccc
Q 003498 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS--PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLK 139 (815)
Q Consensus 62 e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~--~G~ydF~G~~dL~~fl~la~~~GL~ViLR~GPyicaEw~~GG~P~WL~ 139 (815)
..|+++|+.||++|+|+-++-+-|...+|. +|++|-+|-...+++|+.+.++||..++-. -+=.+|.||.
T Consensus 69 hry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL--------~H~dlP~~L~ 140 (477)
T PRK15014 69 GHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITL--------SHFEMPLHLV 140 (477)
T ss_pred cccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 358999999999999999999999999997 577899999999999999999999977642 2346899997
Q ss_pred cC-CCeeeecCChhhHHHHHHHHHHHHHHHHh
Q 003498 140 YI-PGINFRTENGPFKAEMHKFTKKIVDMMKA 170 (815)
Q Consensus 140 ~~-p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~ 170 (815)
.. -|- .|+...++..+|.+.+++.+++
T Consensus 141 ~~yGGW----~n~~~~~~F~~Ya~~~f~~fgd 168 (477)
T PRK15014 141 QQYGSW----TNRKVVDFFVRFAEVVFERYKH 168 (477)
T ss_pred HhcCCC----CChHHHHHHHHHHHHHHHHhcC
Confidence 64 442 3556667777777777777763
No 35
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=96.26 E-value=0.016 Score=73.52 Aligned_cols=95 Identities=21% Similarity=0.248 Sum_probs=67.5
Q ss_pred CceEEEEEEecCCCCcccccCCC-cceEEecCcceEEEEEECCEEEEEEecccCCCeeEEEeeeeccCCccEEEEEEecc
Q 003498 473 TDYLWYMTDVKIDPSEGFLRSGN-YPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGINKIALLSIAV 551 (815)
Q Consensus 473 sgYlwY~T~v~~~~~~~~~~~g~-~~~L~v~~~~d~~~vfVNg~~vGs~~g~~~~~~~~~~~~v~l~~G~n~L~lLven~ 551 (815)
.+-.|||++|.++.+- .+. ...|+++++...+.|||||+++|...+.. ..+.|.+.-.|+.|.|+|+|.|..-
T Consensus 119 n~~gwYrr~F~vp~~w----~~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~L~V~V~~~ 192 (1027)
T PRK09525 119 NPTGCYSLTFTVDESW----LQSGQTRIIFDGVNSAFHLWCNGRWVGYSQDSR--LPAEFDLSPFLRAGENRLAVMVLRW 192 (1027)
T ss_pred CCeEEEEEEEEeChhh----cCCCeEEEEECeeccEEEEEECCEEEEeecCCC--ceEEEEChhhhcCCccEEEEEEEec
Confidence 3678999999886431 122 46899999999999999999999876543 3466665555788999999988422
Q ss_pred CCccccCCCCc----ccccccccEEEccc
Q 003498 552 GLPNVGPHFET----WNAGVLGPVTLNGL 576 (815)
Q Consensus 552 Gr~NyG~~~~~----~~kGI~G~V~L~g~ 576 (815)
- -|.+++. ...||..+|.|.-.
T Consensus 193 s---dgs~~e~qd~w~~sGI~R~V~L~~~ 218 (1027)
T PRK09525 193 S---DGSYLEDQDMWRMSGIFRDVSLLHK 218 (1027)
T ss_pred C---CCCccccCCceeeccccceEEEEEc
Confidence 1 2223332 34799999998543
No 36
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.10 E-value=0.014 Score=68.06 Aligned_cols=96 Identities=13% Similarity=0.132 Sum_probs=75.1
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCC--CceeeeccchhHHHHHHHHHHcCCEEEEecCceeccccCCCCCCcccc
Q 003498 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS--PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLK 139 (815)
Q Consensus 62 e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~--~G~ydF~G~~dL~~fl~la~~~GL~ViLR~GPyicaEw~~GG~P~WL~ 139 (815)
..|+++|+.||++|+|+.++-+-|...+|. ++++|-+|-...+++|+.+.++||..++-. .+=.+|.||.
T Consensus 71 hry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL--------~H~~~P~~l~ 142 (474)
T PRK09852 71 HRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTL--------CHFDVPMHLV 142 (474)
T ss_pred hhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 347999999999999999999999999997 566888888899999999999999976542 2446899997
Q ss_pred cC-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003498 140 YI-PGINFRTENGPFKAEMHKFTKKIVDMMK 169 (815)
Q Consensus 140 ~~-p~i~~Rt~d~~y~~~~~~~~~~i~~~l~ 169 (815)
.. -|- .|+...++..+|.+.+++.++
T Consensus 143 ~~~GGW----~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 143 TEYGSW----RNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred HhcCCC----CCHHHHHHHHHHHHHHHHHhc
Confidence 63 442 345555666666666666665
No 37
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=96.04 E-value=0.02 Score=65.47 Aligned_cols=137 Identities=16% Similarity=0.128 Sum_probs=79.3
Q ss_pred CcEEECCeEeEEEEEEeeCCCC-CcccH-----HHHHHHHHHCCCCEEEEcccCCccCCCC--ceeee--ccchhHHHHH
Q 003498 38 KAIAINGKRRILISGSIHYPRS-SPEMW-----PDLIQKAKDGGLDVIQTYVFWNGHEPSP--GKYYF--EGNYDLVKFI 107 (815)
Q Consensus 38 ~~~~idG~~~~l~sG~iHy~R~-~~e~W-----~d~l~k~Ka~GlN~I~tyvfWn~HEp~~--G~ydF--~G~~dL~~fl 107 (815)
..+.+.+...+.+--.-|-... ...-| ++.+..||.+|||+||.++.|..+++.. ..|-. +--.-|++.|
T Consensus 43 ~~~~~~~~~~~g~~lg~~~~~~~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I 122 (407)
T COG2730 43 SPGQLVGVSWFGLNLGNHLAQGLLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAI 122 (407)
T ss_pred CcceeecccccceecCchhhcccchhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHH
Confidence 3334344444444333343333 44558 8999999999999999999955446543 22222 2123789999
Q ss_pred HHHHHcCCEEEEec----CceeccccCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEE
Q 003498 108 KLAKQAGLYVNLRI----GPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIIL 183 (815)
Q Consensus 108 ~la~~~GL~ViLR~----GPyicaEw~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~ 183 (815)
+.|++.||+|+|-. |.-.|-| ..|....-. ...+..++..+-.+.|..+.+ +.-.||+
T Consensus 123 ~~a~~~gi~V~iD~H~~~~~~~~~~------~s~~~~~~~-----~~~~~~~~~~~~w~~ia~~f~-------~~~~VIg 184 (407)
T COG2730 123 NWAKKLGIYVLIDLHGYPGGNNGHE------HSGYTSDYK-----EENENVEATIDIWKFIANRFK-------NYDTVIG 184 (407)
T ss_pred HHHHhcCeeEEEEecccCCCCCCcC------ccccccccc-----ccchhHHHHHHHHHHHHHhcc-------CCCceee
Confidence 99999999999973 2212111 122221100 012223333334444444444 3558999
Q ss_pred ecccccccC
Q 003498 184 SQIENEYGP 192 (815)
Q Consensus 184 ~QIENEyg~ 192 (815)
+|+=||.-.
T Consensus 185 ~~~~NEP~~ 193 (407)
T COG2730 185 FELINEPNG 193 (407)
T ss_pred eeeecCCcc
Confidence 999999874
No 38
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=95.84 E-value=0.025 Score=65.89 Aligned_cols=97 Identities=12% Similarity=0.092 Sum_probs=76.7
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCC-CceeeeccchhHHHHHHHHHHcCCEEEEecCceeccccCCCCCCccccc
Q 003498 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKY 140 (815)
Q Consensus 62 e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~-~G~ydF~G~~dL~~fl~la~~~GL~ViLR~GPyicaEw~~GG~P~WL~~ 140 (815)
..|+++|+.||++|+|+-++-+-|...+|. +|++|=+|....+++|+.+.++||..++-. -+=-+|.||.+
T Consensus 53 hry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 124 (467)
T TIGR01233 53 HKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTL--------HHFDTPEALHS 124 (467)
T ss_pred hhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEec--------cCCCCcHHHHH
Confidence 458999999999999999999999999996 678888999999999999999999966542 13358999987
Q ss_pred CCCeeeecCChhhHHHHHHHHHHHHHHHHh
Q 003498 141 IPGINFRTENGPFKAEMHKFTKKIVDMMKA 170 (815)
Q Consensus 141 ~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~ 170 (815)
.-|- .|+...++..+|.+.+++.+++
T Consensus 125 ~GGW----~n~~~v~~F~~YA~~~f~~fgd 150 (467)
T TIGR01233 125 NGDF----LNRENIEHFIDYAAFCFEEFPE 150 (467)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhCC
Confidence 5442 3455556666666666666653
No 39
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=95.83 E-value=0.025 Score=66.04 Aligned_cols=96 Identities=11% Similarity=0.111 Sum_probs=74.1
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCC-CceeeeccchhHHHHHHHHHHcCCEEEEecCceeccccCCCCCCccccc
Q 003498 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKY 140 (815)
Q Consensus 62 e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~-~G~ydF~G~~dL~~fl~la~~~GL~ViLR~GPyicaEw~~GG~P~WL~~ 140 (815)
..|+++|+.||++|+|+-++-+.|...+|. .|.+|-+|-..-+++|+.+.++||.-++-. -+=.+|.||.+
T Consensus 54 ~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 125 (469)
T PRK13511 54 HRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTL--------HHFDTPEALHS 125 (469)
T ss_pred hhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCcHHHHH
Confidence 358999999999999999999999999996 578999999999999999999999855432 13368999987
Q ss_pred CCCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003498 141 IPGINFRTENGPFKAEMHKFTKKIVDMMK 169 (815)
Q Consensus 141 ~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~ 169 (815)
.-|- .|+...++..+|.+.+++.+.
T Consensus 126 ~GGW----~n~~~v~~F~~YA~~~~~~fg 150 (469)
T PRK13511 126 NGDW----LNRENIDHFVRYAEFCFEEFP 150 (469)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 5442 344444555555555555554
No 40
>PLN02998 beta-glucosidase
Probab=95.70 E-value=0.011 Score=69.35 Aligned_cols=96 Identities=14% Similarity=0.173 Sum_probs=72.7
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCC-CceeeeccchhHHHHHHHHHHcCCEEEEecCceeccccCCCCCCccccc
Q 003498 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKY 140 (815)
Q Consensus 62 e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~-~G~ydF~G~~dL~~fl~la~~~GL~ViLR~GPyicaEw~~GG~P~WL~~ 140 (815)
..|+++|+.||++|+|+-++-|-|...+|. .|.+|-+|-...+++|+.+.++||..++-. -+=-+|.||.+
T Consensus 82 hry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL--------~H~dlP~~L~~ 153 (497)
T PLN02998 82 HKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTL--------HHFDLPQALED 153 (497)
T ss_pred HhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEe--------cCCCCCHHHHH
Confidence 458999999999999999999999999996 678999999999999999999999855432 12357999986
Q ss_pred C-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003498 141 I-PGINFRTENGPFKAEMHKFTKKIVDMMK 169 (815)
Q Consensus 141 ~-p~i~~Rt~d~~y~~~~~~~~~~i~~~l~ 169 (815)
. -|- .|+...++..+|.+.+++++.
T Consensus 154 ~yGGW----~n~~~v~~F~~YA~~~~~~fg 179 (497)
T PLN02998 154 EYGGW----LSQEIVRDFTAYADTCFKEFG 179 (497)
T ss_pred hhCCc----CCchHHHHHHHHHHHHHHHhc
Confidence 3 553 233344444455555555544
No 41
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=95.58 E-value=0.016 Score=67.64 Aligned_cols=96 Identities=14% Similarity=0.107 Sum_probs=73.0
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCC--CceeeeccchhHHHHHHHHHHcCCEEEEecCceeccccCCCCCCcccc
Q 003498 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS--PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLK 139 (815)
Q Consensus 62 e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~--~G~ydF~G~~dL~~fl~la~~~GL~ViLR~GPyicaEw~~GG~P~WL~ 139 (815)
..|+++|+.||++|+|+-++-+-|...+|. +|++|=+|-..-+++|+.+.++||..++-. -+=-+|.||.
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL--------~H~dlP~~L~ 144 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTI--------THFDCPMHLI 144 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------cccCCCHHHH
Confidence 458999999999999999999999999997 667898999999999999999999855432 1335899998
Q ss_pred cC-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003498 140 YI-PGINFRTENGPFKAEMHKFTKKIVDMMK 169 (815)
Q Consensus 140 ~~-p~i~~Rt~d~~y~~~~~~~~~~i~~~l~ 169 (815)
+. -|- .|+...++..+|.+.+++.+.
T Consensus 145 ~~~GGW----~n~~~v~~F~~YA~~~~~~fg 171 (478)
T PRK09593 145 EEYGGW----RNRKMVGFYERLCRTLFTRYK 171 (478)
T ss_pred hhcCCC----CChHHHHHHHHHHHHHHHHhc
Confidence 64 553 234444444555555555554
No 42
>PLN02814 beta-glucosidase
Probab=95.51 E-value=0.014 Score=68.64 Aligned_cols=96 Identities=15% Similarity=0.188 Sum_probs=73.5
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCC-CceeeeccchhHHHHHHHHHHcCCEEEEecCceeccccCCCCCCccccc
Q 003498 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKY 140 (815)
Q Consensus 62 e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~-~G~ydF~G~~dL~~fl~la~~~GL~ViLR~GPyicaEw~~GG~P~WL~~ 140 (815)
..|+++|+.||++|+|+-++-+-|...+|. +|.+|-+|-...+++|+.+.++||..++-. -+=-+|.||.+
T Consensus 77 hry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL--------~H~dlP~~L~~ 148 (504)
T PLN02814 77 HKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTL--------YHYDLPQSLED 148 (504)
T ss_pred HhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEe--------cCCCCCHHHHH
Confidence 458999999999999999999999999996 688999999999999999999999855432 12247999987
Q ss_pred C-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003498 141 I-PGINFRTENGPFKAEMHKFTKKIVDMMK 169 (815)
Q Consensus 141 ~-p~i~~Rt~d~~y~~~~~~~~~~i~~~l~ 169 (815)
. -|- .|+...++-.+|.+.+++.+.
T Consensus 149 ~yGGW----~n~~~i~~F~~YA~~~f~~fg 174 (504)
T PLN02814 149 EYGGW----INRKIIEDFTAFADVCFREFG 174 (504)
T ss_pred hcCCc----CChhHHHHHHHHHHHHHHHhC
Confidence 4 442 234444445555555555554
No 43
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=95.47 E-value=0.19 Score=50.79 Aligned_cols=63 Identities=25% Similarity=0.486 Sum_probs=46.1
Q ss_pred CCCCcccHHHHHHHHHHCCCCEEEEcccCCccC-----CC---CceeeeccchhHHHHHHHHHHcCCEEEEec
Q 003498 57 PRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHE-----PS---PGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (815)
Q Consensus 57 ~R~~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HE-----p~---~G~ydF~G~~dL~~fl~la~~~GL~ViLR~ 121 (815)
-.++++.|+++++.||++|+|+|=.= |...+ |. ++.|.-....-|+.+|++|++.||+|++..
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl 85 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGL 85 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeC
Confidence 46899999999999999999998421 22211 11 223333344578999999999999999864
No 44
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=95.39 E-value=0.018 Score=67.23 Aligned_cols=96 Identities=15% Similarity=0.129 Sum_probs=72.6
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCC--CceeeeccchhHHHHHHHHHHcCCEEEEecCceeccccCCCCCCcccc
Q 003498 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS--PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLK 139 (815)
Q Consensus 62 e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~--~G~ydF~G~~dL~~fl~la~~~GL~ViLR~GPyicaEw~~GG~P~WL~ 139 (815)
..|+++|+.||++|+|+-++-|-|...+|. +|++|=+|-..-+++|+.+.++||.-++-. -+=-+|.||.
T Consensus 67 hry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL--------~H~dlP~~L~ 138 (476)
T PRK09589 67 HRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTL--------SHFEMPYHLV 138 (476)
T ss_pred HhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCCHHHH
Confidence 458999999999999999999999999997 567888999999999999999999855442 2335899997
Q ss_pred cC-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003498 140 YI-PGINFRTENGPFKAEMHKFTKKIVDMMK 169 (815)
Q Consensus 140 ~~-p~i~~Rt~d~~y~~~~~~~~~~i~~~l~ 169 (815)
.. -|- .|+...++..+|.+.+++.+.
T Consensus 139 ~~yGGW----~n~~~i~~F~~YA~~~f~~fg 165 (476)
T PRK09589 139 TEYGGW----RNRKLIDFFVRFAEVVFTRYK 165 (476)
T ss_pred HhcCCc----CChHHHHHHHHHHHHHHHHhc
Confidence 63 553 233444444555555555554
No 45
>PLN02849 beta-glucosidase
Probab=95.17 E-value=0.024 Score=66.65 Aligned_cols=96 Identities=15% Similarity=0.203 Sum_probs=73.2
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCC-CceeeeccchhHHHHHHHHHHcCCEEEEecCceeccccCCCCCCccccc
Q 003498 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKY 140 (815)
Q Consensus 62 e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~-~G~ydF~G~~dL~~fl~la~~~GL~ViLR~GPyicaEw~~GG~P~WL~~ 140 (815)
..|+++|+.||++|+|+-++-+-|...+|. .|++|-+|-...+++|+.+.++||.-++-. -+=-+|.||.+
T Consensus 79 hrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 150 (503)
T PLN02849 79 HKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTL--------FHYDHPQYLED 150 (503)
T ss_pred HhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEee--------cCCCCcHHHHH
Confidence 358999999999999999999999999996 478899999999999999999999955432 13358999987
Q ss_pred C-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003498 141 I-PGINFRTENGPFKAEMHKFTKKIVDMMK 169 (815)
Q Consensus 141 ~-p~i~~Rt~d~~y~~~~~~~~~~i~~~l~ 169 (815)
. -|- .|+...++..+|.+.+++++.
T Consensus 151 ~yGGW----~nr~~v~~F~~YA~~~f~~fg 176 (503)
T PLN02849 151 DYGGW----INRRIIKDFTAYADVCFREFG 176 (503)
T ss_pred hcCCc----CCchHHHHHHHHHHHHHHHhc
Confidence 3 443 234444555555555555554
No 46
>PRK09936 hypothetical protein; Provisional
Probab=95.12 E-value=0.073 Score=57.90 Aligned_cols=57 Identities=26% Similarity=0.409 Sum_probs=46.8
Q ss_pred CCCCcccHHHHHHHHHHCCCCEEEEcccCCcc-CCCCceeeeccc-hhHHHHHHHHHHcCCEEEEe
Q 003498 57 PRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGH-EPSPGKYYFEGN-YDLVKFIKLAKQAGLYVNLR 120 (815)
Q Consensus 57 ~R~~~e~W~d~l~k~Ka~GlN~I~tyvfWn~H-Ep~~G~ydF~G~-~dL~~fl~la~~~GL~ViLR 120 (815)
.+++++.|+++++.+|+.|++|+= |=|..- |. ||.|. ..|.+-++.|+++||.|++.
T Consensus 33 ~~~~~~qWq~~~~~~~~~G~~tLi--vQWt~yG~~-----~fg~~~g~La~~l~~A~~~Gl~v~vG 91 (296)
T PRK09936 33 SQVTDTQWQGLWSQLRLQGFDTLV--VQWTRYGDA-----DFGGQRGWLAKRLAAAQQAGLKLVVG 91 (296)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEE--EEeeeccCC-----CcccchHHHHHHHHHHHHcCCEEEEc
Confidence 467999999999999999999864 456543 22 88765 58999999999999999884
No 47
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.61 E-value=0.16 Score=55.18 Aligned_cols=110 Identities=28% Similarity=0.331 Sum_probs=77.4
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHH---HcCCEEEEecCceeccccCCCCCCccccc
Q 003498 64 WPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAK---QAGLYVNLRIGPYVCAEWNFGGFPVWLKY 140 (815)
Q Consensus 64 W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~---~~GL~ViLR~GPyicaEw~~GG~P~WL~~ 140 (815)
=.|.|+-+|+.|+|-|+.-| ||..--..|+=-=.|+.|+.+-|++|+ +.||+|+|.+= +-.|..
T Consensus 65 ~qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH-----------YSDfwa- 131 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH-----------YSDFWA- 131 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc-----------chhhcc-
Confidence 46899999999999999865 776544555544567889999998865 46999999741 112211
Q ss_pred CCCeee------ecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEecccccccC
Q 003498 141 IPGINF------RTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGP 192 (815)
Q Consensus 141 ~p~i~~------Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~ 192 (815)
+|+-+. --+-+.-++++-.|.+..+..++++. =-+=||||-||-.+
T Consensus 132 DPakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~eG------i~pdmVQVGNEtn~ 183 (403)
T COG3867 132 DPAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKEG------ILPDMVQVGNETNG 183 (403)
T ss_pred ChhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHcC------CCccceEeccccCC
Confidence 233211 12234567888889999999999654 35679999999854
No 48
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=93.73 E-value=0.13 Score=59.34 Aligned_cols=96 Identities=18% Similarity=0.269 Sum_probs=73.5
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCCCc--eeeeccchhHHHHHHHHHHcCCEEEEecCceeccccCCCCCCcccc
Q 003498 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPG--KYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLK 139 (815)
Q Consensus 62 e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G--~ydF~G~~dL~~fl~la~~~GL~ViLR~GPyicaEw~~GG~P~WL~ 139 (815)
..++++|+.||+||+|+.+|-|.|...-|..+ +.|=.|-...++.|+.|.++|+.-++-. .+=-+|.||.
T Consensus 59 hrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL--------~Hfd~P~~L~ 130 (460)
T COG2723 59 HRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTL--------YHFDLPLWLQ 130 (460)
T ss_pred hhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe--------cccCCcHHHh
Confidence 34789999999999999999999999999654 4898999999999999999999966542 2334799999
Q ss_pred cC-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003498 140 YI-PGINFRTENGPFKAEMHKFTKKIVDMMK 169 (815)
Q Consensus 140 ~~-p~i~~Rt~d~~y~~~~~~~~~~i~~~l~ 169 (815)
+. -|= .|..-.++-.+|.+.++++++
T Consensus 131 ~~ygGW----~nR~~i~~F~~ya~~vf~~f~ 157 (460)
T COG2723 131 KPYGGW----ENRETVDAFARYAATVFERFG 157 (460)
T ss_pred hccCCc----cCHHHHHHHHHHHHHHHHHhc
Confidence 85 353 233344555566666666555
No 49
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=93.47 E-value=0.43 Score=46.53 Aligned_cols=98 Identities=14% Similarity=0.179 Sum_probs=65.0
Q ss_pred HHHHHHHHCCCCEEEEccc-------C--CccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCceeccccCCCCCCc
Q 003498 66 DLIQKAKDGGLDVIQTYVF-------W--NGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPV 136 (815)
Q Consensus 66 d~l~k~Ka~GlN~I~tyvf-------W--n~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~GPyicaEw~~GG~P~ 136 (815)
+.++.+|++|+|+|.++.= | .+|.+.|+- ++.-|.++++.|++.||.|+.|.-.- --|+-.--.|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L----~~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL----KRDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC----CcCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 4567899999999998432 2 345555554 12256899999999999999997655 33444556799
Q ss_pred ccccCCCee-------------eecCChhhHHHHHHHHHHHHHHH
Q 003498 137 WLKYIPGIN-------------FRTENGPFKAEMHKFTKKIVDMM 168 (815)
Q Consensus 137 WL~~~p~i~-------------~Rt~d~~y~~~~~~~~~~i~~~l 168 (815)
|+..+++-+ .=..|.+|++.+.+-+++|++..
T Consensus 79 W~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 79 WFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred eeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 998644311 11235678876666666665543
No 50
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=92.41 E-value=23 Score=40.58 Aligned_cols=241 Identities=13% Similarity=0.151 Sum_probs=122.0
Q ss_pred CCcccHHHHHHHHHHCCCCEEEE-------cccCCccCCCCceeeeccchh-HHHHHHHHHHcCCEEEEecCceecc-cc
Q 003498 59 SSPEMWPDLIQKAKDGGLDVIQT-------YVFWNGHEPSPGKYYFEGNYD-LVKFIKLAKQAGLYVNLRIGPYVCA-EW 129 (815)
Q Consensus 59 ~~~e~W~d~l~k~Ka~GlN~I~t-------yvfWn~HEp~~G~ydF~G~~d-L~~fl~la~~~GL~ViLR~GPyica-Ew 129 (815)
..++.| .+.+|++|+.-|-. +-.|.-....-..-+-.-.+| |.+|.+.|+++||++-+ |.-. +|
T Consensus 81 fD~~~W---a~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~----Y~S~~DW 153 (384)
T smart00812 81 FDPEEW---ADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGL----YHSLFDW 153 (384)
T ss_pred CCHHHH---HHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEE----EcCHHHh
Confidence 345555 56788889885532 223544322111111111345 45788999999998776 4443 77
Q ss_pred CCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEecccccccCcccccCCCCHHHHHHHH
Q 003498 130 NFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIGAPGRSYTRWAA 209 (815)
Q Consensus 130 ~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~Y~~~l~ 209 (815)
.+ |.|....+.-..+.+.+.|.++++.|+.+|.+.|.++ ||-|++- +-..+.. ...--++.+.
T Consensus 154 ~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Y-------gpd~lWf-D~~~~~~------~~~~~~~~l~ 216 (384)
T smart00812 154 FN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRY-------KPDLLWF-DGGWEAP------DDYWRSKEFL 216 (384)
T ss_pred CC---CccccccccccccccchhHHHHHHHHHHHHHHHHhcC-------CCceEEE-eCCCCCc------cchhcHHHHH
Confidence 64 5443221111223456778888888888888877733 3434441 1111110 0111145566
Q ss_pred HHHHhcCCCc-ceeecCCCCCCCccccCCCCc--cc-ccCCCCC-CCCCceee-ecccccccccCC-CCCCCChHHHHHH
Q 003498 210 KMAVGLGTGV-PWIMCKQDDAPDPLINTCNGF--YC-DYFSPNK-AYKPKMWT-EAWTGWYTEFGG-PVPHRPVEDLAFS 282 (815)
Q Consensus 210 ~~~~~~g~~v-P~~~~~~~~~p~~vi~t~ng~--~~-~~f~~~~-p~~P~~~t-E~~~GWf~~wG~-~~~~r~~ed~a~~ 282 (815)
++++++.-+. -.+.++... ...+. .+. .+ +...+.. ...|.-.. =.-.+|+=+-++ ....++++++...
T Consensus 217 ~~~~~~qP~~~~vvvn~R~~---~~~~~-~g~~~~~~e~~~p~~~~~~pwE~~~ti~~sWgy~~~~~~~~~ks~~~li~~ 292 (384)
T smart00812 217 AWLYNLSPVKDTVVVNDRWG---GTGCK-HGGFYTDEERGAPGKLLPHPWETCTTIGKSWGYRRNESDSDYKSPKELIRD 292 (384)
T ss_pred HHHHHhCCCCceEEEEcccc---ccCCC-CCCcccCcccCCCCCCCCCCcccccccCCCCCcCCCCCcccCCCHHHHHHH
Confidence 6776654432 012222210 00000 010 11 1111111 11121100 011234333333 2336789999999
Q ss_pred HHHHHHhCCee-eeeeeeecCCCCCCCCCCCcccccCCCCCCCCcCCCCCchhHHHHHHHHHHHHhhcCCcC
Q 003498 283 VAKFIQKGGSF-INYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEPALV 353 (815)
Q Consensus 283 v~~~~~~g~s~-~nyYM~hGGTNFG~~~G~~~~~TSYDYdAPl~E~G~~~~pKy~~lr~l~~~i~~~~~~l~ 353 (815)
+.+..++||++ +|. +-+.+|.+-+..-..|+++.+.++....++-
T Consensus 293 l~~~Vsk~GnlLLNV--------------------------gP~~dG~ip~~~~~~L~~iG~Wl~~ngeaIy 338 (384)
T smart00812 293 LVDIVSKGGNLLLNV--------------------------GPKADGTIPEEEEERLLEIGKWLKVNGEAIY 338 (384)
T ss_pred HhhhcCCCceEEEcc--------------------------CCCCCCCCCHHHHHHHHHHHHHHHhCCceee
Confidence 99999999984 332 3456788866677889999999987666553
No 51
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=92.12 E-value=2 Score=51.99 Aligned_cols=69 Identities=23% Similarity=0.197 Sum_probs=45.4
Q ss_pred EEeeCCCCCc-ccHHH---H-HHHHHHCCCCEEEE-cccCCccCCCCcee----------eeccchhHHHHHHHHHHcCC
Q 003498 52 GSIHYPRSSP-EMWPD---L-IQKAKDGGLDVIQT-YVFWNGHEPSPGKY----------YFEGNYDLVKFIKLAKQAGL 115 (815)
Q Consensus 52 G~iHy~R~~~-e~W~d---~-l~k~Ka~GlN~I~t-yvfWn~HEp~~G~y----------dF~G~~dL~~fl~la~~~GL 115 (815)
=|+|..-..+ -.++. . |.-+|++|+|+|+. +|+..-....= -| .|.+..||.+||+.|+++||
T Consensus 142 Ye~hv~~~~~~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~w-GY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi 220 (613)
T TIGR01515 142 YELHLGSWRHGLSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSW-GYQVTGYYAPTSRFGTPDDFMYFVDACHQAGI 220 (613)
T ss_pred EEEehhhccCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCC-CCCcccCcccccccCCHHHHHHHHHHHHHCCC
Confidence 3566533322 23444 3 36669999999998 77754211100 12 34556799999999999999
Q ss_pred EEEEec
Q 003498 116 YVNLRI 121 (815)
Q Consensus 116 ~ViLR~ 121 (815)
.|||-.
T Consensus 221 ~VilD~ 226 (613)
T TIGR01515 221 GVILDW 226 (613)
T ss_pred EEEEEe
Confidence 999984
No 52
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=91.18 E-value=3.4 Score=44.49 Aligned_cols=131 Identities=15% Similarity=0.185 Sum_probs=75.9
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEE-EecCceeccccCCCCCCcccc
Q 003498 61 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVN-LRIGPYVCAEWNFGGFPVWLK 139 (815)
Q Consensus 61 ~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vi-LR~GPyicaEw~~GG~P~WL~ 139 (815)
..-|++.|+.+++.|++.|+.-+ +..| ..+...+++ ..++.++.++++++||.|. +.+++ .+.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~-~~~~-~~~~~~~~~-~~~~~~~~~~l~~~gl~i~~~~~~~-------~~~~~---- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSV-DETD-DRLSRLDWS-REQRLALVNAIIETGVRIPSMCLSA-------HRRFP---- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec-CCcc-chhhccCCC-HHHHHHHHHHHHHcCCCceeeecCC-------CccCc----
Confidence 45699999999999999999943 2222 223444554 3578899999999999875 43321 01111
Q ss_pred cCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEecccccccCcccccC---CCCHHHHHHHHHHHHhcC
Q 003498 140 YIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIG---APGRSYTRWAAKMAVGLG 216 (815)
Q Consensus 140 ~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~---~~~~~Y~~~l~~~~~~~g 216 (815)
+-..|+.-+++....+++.++..+ .+ |.++|.+- ..++.. ..... ..-.++++.+.++|++.|
T Consensus 81 ------l~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~-~~~~~~-~~~~~~~~~~~~~~l~~l~~~A~~~G 146 (279)
T TIGR00542 81 ------LGSKDKAVRQQGLEIMEKAIQLAR--DL----GIRTIQLA-GYDVYY-EEHDEETRRRFREGLKEAVELAARAQ 146 (279)
T ss_pred ------CCCcCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEec-Cccccc-CcCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 112345556666667777777777 33 56776542 111100 00000 012245667777777777
Q ss_pred CCc
Q 003498 217 TGV 219 (815)
Q Consensus 217 ~~v 219 (815)
+.+
T Consensus 147 v~l 149 (279)
T TIGR00542 147 VTL 149 (279)
T ss_pred CEE
Confidence 754
No 53
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=90.26 E-value=0.21 Score=57.48 Aligned_cols=156 Identities=17% Similarity=0.176 Sum_probs=106.9
Q ss_pred cEEECCeEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCcc-CC---CCceeee-ccchhHHHHHHHHHHc
Q 003498 39 AIAINGKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGH-EP---SPGKYYF-EGNYDLVKFIKLAKQA 113 (815)
Q Consensus 39 ~~~idG~~~~l~sG~iHy~R~~~e~W~d~l~k~Ka~GlN~I~tyvfWn~H-Ep---~~G~ydF-~G~~dL~~fl~la~~~ 113 (815)
.|.++++++..++..--++++--++-+++|+-|+.+|+++++.. -+- |+ ++|.-+- ++-.-++.|++.|...
T Consensus 3 ~F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~f---iLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l 79 (587)
T COG3934 3 VFALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLF---ILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYL 79 (587)
T ss_pred eEEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEE---EecCcchhhhhceecccccHHHHHHHhhhcccC
Confidence 37888888888877777788877788889999999999999984 455 66 3333222 2345789999999999
Q ss_pred CCEEEEecCceeccccCCCCCC---ccccc-CCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEeccccc
Q 003498 114 GLYVNLRIGPYVCAEWNFGGFP---VWLKY-IPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENE 189 (815)
Q Consensus 114 GL~ViLR~GPyicaEw~~GG~P---~WL~~-~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENE 189 (815)
+|+|+++. |.+==.+||-- .|... .|+-. .-|+.++..-++|+..+++-.+. ...|.+|-+-||
T Consensus 80 ~lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~--iyD~k~~~~~kkyvedlVk~yk~-------~ptI~gw~l~Ne 147 (587)
T COG3934 80 DLKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNV--IYDPKFRGPGKKYVEDLVKPYKL-------DPTIAGWALRNE 147 (587)
T ss_pred cceEEEEE---eecccccCcceeEeecCCCCCcccc--ccchhhcccHHHHHHHHhhhhcc-------ChHHHHHHhcCC
Confidence 99999873 44433455542 23321 23211 12566666677888887775553 347888999999
Q ss_pred ccCcccccCCCCHHHHHHHHHHH
Q 003498 190 YGPMEYEIGAPGRSYTRWAAKMA 212 (815)
Q Consensus 190 yg~~~~~~~~~~~~Y~~~l~~~~ 212 (815)
..... ...+..+++|++.|.
T Consensus 148 --~lv~~-p~s~N~f~~w~~emy 167 (587)
T COG3934 148 --PLVEA-PISVNNFWDWSGEMY 167 (587)
T ss_pred --ccccc-cCChhHHHHHHHHHH
Confidence 33211 235788999999997
No 54
>smart00642 Aamy Alpha-amylase domain.
Probab=88.87 E-value=1.1 Score=45.18 Aligned_cols=65 Identities=17% Similarity=0.180 Sum_probs=44.7
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCccC-------CCCcee-----eeccchhHHHHHHHHHHcCCEEEEecCceeccc
Q 003498 64 WPDLIQKAKDGGLDVIQTYVFWNGHE-------PSPGKY-----YFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAE 128 (815)
Q Consensus 64 W~d~l~k~Ka~GlN~I~tyvfWn~HE-------p~~G~y-----dF~G~~dL~~fl~la~~~GL~ViLR~GPyicaE 128 (815)
+.+.|.-+|++|+|+|.+-=++..-+ -.+..| .|....|+.++++.|+++||.||+-.=|-=++.
T Consensus 21 i~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 21 IIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 45566669999999999753332221 112222 455668999999999999999999865544444
No 55
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=88.60 E-value=4.7 Score=47.59 Aligned_cols=149 Identities=18% Similarity=0.262 Sum_probs=95.6
Q ss_pred CcEEECCeEeEEEEEEeeC-----CCCCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHH
Q 003498 38 KAIAINGKRRILISGSIHY-----PRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQ 112 (815)
Q Consensus 38 ~~~~idG~~~~l~sG~iHy-----~R~~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~ 112 (815)
-.|.|||.|.++-+++--+ .|.+-+.-+-.|+-++++|+|++++ |.. |.+.-+.|-++|.+
T Consensus 328 fyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRV---WGG-----------GvYEsd~FY~lad~ 393 (867)
T KOG2230|consen 328 FYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRV---WGG-----------GVYESDYFYQLADS 393 (867)
T ss_pred eEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEE---ecC-----------ccccchhHHHHhhh
Confidence 3578999999988776543 2344555667899999999999998 654 33446899999999
Q ss_pred cCCEEEEecCceeccccCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEecc--cccc
Q 003498 113 AGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQI--ENEY 190 (815)
Q Consensus 113 ~GL~ViLR~GPyicaEw~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QI--ENEy 190 (815)
.||.|--.. =|.||- =-.|+.|+..++.=++.=+.+|+.|| .||.+-= |||=
T Consensus 394 lGilVWQD~-MFACAl------------------YPt~~eFl~sv~eEV~yn~~Rls~Hp-------SviIfsgNNENEa 447 (867)
T KOG2230|consen 394 LGILVWQDM-MFACAL------------------YPTNDEFLSSVREEVRYNAMRLSHHP-------SVIIFSGNNENEA 447 (867)
T ss_pred ccceehhhh-HHHhhc------------------ccCcHHHHHHHHHHHHHHHHhhccCC-------eEEEEeCCCccHH
Confidence 999775332 123432 22467888888887777777777554 6666653 4542
Q ss_pred cCcccccC-------CCCHHHH----HHHHHHHHhcCCCcceeecCC
Q 003498 191 GPMEYEIG-------APGRSYT----RWAAKMAVGLGTGVPWIMCKQ 226 (815)
Q Consensus 191 g~~~~~~~-------~~~~~Y~----~~l~~~~~~~g~~vP~~~~~~ 226 (815)
.-.+.-|+ ..-++|+ +-+++++..-.-..|.+|...
T Consensus 448 Al~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SSP 494 (867)
T KOG2230|consen 448 ALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSSP 494 (867)
T ss_pred HHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecCC
Confidence 11111111 1223343 445566655556778888754
No 56
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=88.33 E-value=2.1 Score=47.48 Aligned_cols=118 Identities=21% Similarity=0.228 Sum_probs=71.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCc-------cCCC-------CceeeeccchhHHHHHHHHHHcCCEEEEecCcee
Q 003498 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNG-------HEPS-------PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYV 125 (815)
Q Consensus 60 ~~e~W~d~l~k~Ka~GlN~I~tyvfWn~-------HEp~-------~G~ydF~G~~dL~~fl~la~~~GL~ViLR~GPyi 125 (815)
.++.-++.|++++++|+|+|=.-|-+.. .+|. +|+ + -|.--|..+|+.|++.||.|+.++ .+-
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~-~-pg~DpL~~~I~eaHkrGlevHAW~-~~~ 93 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGK-D-PGFDPLEFMIEEAHKRGLEVHAWF-RVG 93 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCC-C-CCccHHHHHHHHHHHcCCEEEEEE-Eee
Confidence 6677889999999999999975544321 2221 111 1 012279999999999999999776 111
Q ss_pred ccccCC----CCCCcccc-cCCCeeeec----CCh----hhHHHHHHHHHHHHHHHH-hccccccCCCceEEecccc
Q 003498 126 CAEWNF----GGFPVWLK-YIPGINFRT----ENG----PFKAEMHKFTKKIVDMMK-AERLFESQGGPIILSQIEN 188 (815)
Q Consensus 126 caEw~~----GG~P~WL~-~~p~i~~Rt----~d~----~y~~~~~~~~~~i~~~l~-~~~l~~~~gGpII~~QIEN 188 (815)
-.--.. -..|.|+. +.++..... .+. |-..+++.|+..++..|. ++ +|=++|++-
T Consensus 94 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Y--------dvDGIhlDd 162 (311)
T PF02638_consen 94 FNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNY--------DVDGIHLDD 162 (311)
T ss_pred cCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcC--------CCCeEEecc
Confidence 110011 12488876 456543333 111 234778888888876654 33 466778773
No 57
>PRK14706 glycogen branching enzyme; Provisional
Probab=87.97 E-value=6.5 Score=47.99 Aligned_cols=54 Identities=13% Similarity=0.063 Sum_probs=35.9
Q ss_pred HHHHHHCCCCEEEE-ccc-------CCccCC--CCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 003498 68 IQKAKDGGLDVIQT-YVF-------WNGHEP--SPGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (815)
Q Consensus 68 l~k~Ka~GlN~I~t-yvf-------Wn~HEp--~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~ 121 (815)
+.-+|++|+|+|+. .|. |...-- ..=.=.|....||.+|++.|+++||.|||-.
T Consensus 174 ~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 174 GEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 35689999999995 332 322100 0000113445799999999999999999873
No 58
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=87.92 E-value=7.9 Score=41.42 Aligned_cols=131 Identities=15% Similarity=0.197 Sum_probs=75.0
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEE-EecCceeccccCCCCCCccccc
Q 003498 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVN-LRIGPYVCAEWNFGGFPVWLKY 140 (815)
Q Consensus 62 e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vi-LR~GPyicaEw~~GG~P~WL~~ 140 (815)
-.|++.++.++++|++.|+..+. ..|+ .....+|+ ..++.++-++++++||.|. +.++ ++-.+
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~----------~~~~~--- 79 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWS-KEERLSLVKAIYETGVRIPSMCLS----------GHRRF--- 79 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCC-HHHHHHHHHHHHHcCCCceEEecc----------cccCc---
Confidence 35999999999999999999532 2222 11122333 3478999999999999876 3221 11000
Q ss_pred CCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEecccccccCcc--cccCCCCHHHHHHHHHHHHhcCCC
Q 003498 141 IPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPME--YEIGAPGRSYTRWAAKMAVGLGTG 218 (815)
Q Consensus 141 ~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~--~~~~~~~~~Y~~~l~~~~~~~g~~ 218 (815)
.+.+.|+..+++..+.++++++..+ .| |.+.|.+---..+.... ..+ +.-.+.++.+.+++.+.|+.
T Consensus 80 ----~~~~~d~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~ 148 (284)
T PRK13210 80 ----PFGSRDPATRERALEIMKKAIRLAQ--DL----GIRTIQLAGYDVYYEEKSEETR-QRFIEGLAWAVEQAAAAQVM 148 (284)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEECCcccccccccHHHH-HHHHHHHHHHHHHHHHhCCE
Confidence 1234566656666667777777776 33 55666542000000000 000 01235677788888888775
Q ss_pred c
Q 003498 219 V 219 (815)
Q Consensus 219 v 219 (815)
+
T Consensus 149 l 149 (284)
T PRK13210 149 L 149 (284)
T ss_pred E
Confidence 4
No 59
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=87.68 E-value=2.7 Score=49.61 Aligned_cols=249 Identities=18% Similarity=0.291 Sum_probs=121.8
Q ss_pred HHCCCCEEEEccc--------CCccCCCCc-----eeeecc--chhHHHHHHHHHHc--CCEEEEecCceeccccCCCCC
Q 003498 72 KDGGLDVIQTYVF--------WNGHEPSPG-----KYYFEG--NYDLVKFIKLAKQA--GLYVNLRIGPYVCAEWNFGGF 134 (815)
Q Consensus 72 Ka~GlN~I~tyvf--------Wn~HEp~~G-----~ydF~G--~~dL~~fl~la~~~--GL~ViLR~GPyicaEw~~GG~ 134 (815)
+-+|++.+|+.+- +.+-+ .|+ .|+... ...+..+|+.|++. +|+++.-| | -.
T Consensus 110 ~G~g~s~~R~pIgssDfs~~~Yty~d-~~~D~~l~~Fs~~~~d~~~~ip~ik~a~~~~~~lki~aSp-------W---Sp 178 (496)
T PF02055_consen 110 DGIGYSLLRVPIGSSDFSTRPYTYDD-VPGDFNLSNFSIAREDKKYKIPLIKEALAINPNLKIFASP-------W---SP 178 (496)
T ss_dssp TTT---EEEEEES--SSSSS---ST--STTHTTTTT---HHHHHTTHHHHHHHHHHHHTT-EEEEEE-------S-----
T ss_pred CCceEEEEEeeccCcCCcCCcccccC-CCCCCccccCCccccchhhHHHHHHHHHHhCCCcEEEEec-------C---CC
Confidence 4479999998775 22222 223 222221 12235688888764 57777765 5 37
Q ss_pred CcccccCCCe----eeec-CChhhHHHHHHHHHHHHHHHHhccccccCCCceEEecccccccCcc---cccC------CC
Q 003498 135 PVWLKYIPGI----NFRT-ENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPME---YEIG------AP 200 (815)
Q Consensus 135 P~WL~~~p~i----~~Rt-~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~---~~~~------~~ 200 (815)
|.|++....+ .++. .++.|.++...|+.+-++.+++ +|=||=++-+.||..... ..|. +.
T Consensus 179 P~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~------~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~ 252 (496)
T PF02055_consen 179 PAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKK------EGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEE 252 (496)
T ss_dssp -GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHC------TT--ESEEESSSSCCGGGSTT-SSC--B--HHH
T ss_pred CHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHH------CCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHH
Confidence 9999864322 3442 3456888888888888888884 455999999999986421 1122 12
Q ss_pred CHHHHH-HHHHHHHhcCC--CcceeecCC--CCCCC---ccccC------CC--Cccc--c-cC-------CCCCCCCCc
Q 003498 201 GRSYTR-WAAKMAVGLGT--GVPWIMCKQ--DDAPD---PLINT------CN--GFYC--D-YF-------SPNKAYKPK 254 (815)
Q Consensus 201 ~~~Y~~-~l~~~~~~~g~--~vP~~~~~~--~~~p~---~vi~t------~n--g~~~--~-~f-------~~~~p~~P~ 254 (815)
.+++++ .|.-.+++.++ ++-+++.+. .+.|+ .+++- .. +++| + .. ....|++.+
T Consensus 253 ~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d~~A~~yv~GiA~HwY~g~~~~~~l~~~h~~~P~k~l 332 (496)
T PF02055_consen 253 QADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILNDPEAAKYVDGIAFHWYGGDPSPQALDQVHNKFPDKFL 332 (496)
T ss_dssp HHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTSHHHHTTEEEEEEEETTCS-HCHHHHHHHHHSTTSEE
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcChhhHhheeEEEEECCCCCchhhHHHHHHHHCCCcEE
Confidence 356664 47777887766 776666653 22332 12211 11 2334 1 11 123588999
Q ss_pred eeeecccccccccCCCCCC---CChHHHHHHHHHHHHhCCeeeeeeee------ecCCCCCCCC-CCCcccccCCCCCCC
Q 003498 255 MWTEAWTGWYTEFGGPVPH---RPVEDLAFSVAKFIQKGGSFINYYMY------HGGTNFGRTA-GGPFIATSYDYDAPL 324 (815)
Q Consensus 255 ~~tE~~~GWf~~wG~~~~~---r~~ed~a~~v~~~~~~g~s~~nyYM~------hGGTNFG~~~-G~~~~~TSYDYdAPl 324 (815)
+.||-..|.- .|+..... ..++..+..+..-+..+.+ ++-++ .||-|++.-. .++.++.. +.
T Consensus 333 ~~TE~~~g~~-~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~--gw~~WNl~LD~~GGP~~~~n~~d~~iivd~-~~---- 404 (496)
T PF02055_consen 333 LFTEACCGSW-NWDTSVDLGSWDRAERYAHDIIGDLNNWVS--GWIDWNLALDENGGPNWVGNFCDAPIIVDS-DT---- 404 (496)
T ss_dssp EEEEEESS-S-TTS-SS-TTHHHHHHHHHHHHHHHHHTTEE--EEEEEESEBETTS---TT---B--SEEEEG-GG----
T ss_pred EeeccccCCC-CcccccccccHHHHHHHHHHHHHHHHhhce--eeeeeeeecCCCCCCcccCCCCCceeEEEc-CC----
Confidence 9999875531 22211111 1234444444444555543 32222 5888875321 12322111 11
Q ss_pred CcCCCCCchhHHHHHHHHHHHHh
Q 003498 325 DEYGLLRQPKWGHLKDLHRAIKL 347 (815)
Q Consensus 325 ~E~G~~~~pKy~~lr~l~~~i~~ 347 (815)
+| -.++|.|.+|..+-++++.
T Consensus 405 ~~--~~~~p~yY~~gHfSKFV~P 425 (496)
T PF02055_consen 405 GE--FYKQPEYYAMGHFSKFVRP 425 (496)
T ss_dssp TE--EEE-HHHHHHHHHHTTS-T
T ss_pred Ce--EEEcHHHHHHHHHhcccCC
Confidence 12 1347999999998888764
No 60
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.94 E-value=8.7 Score=44.41 Aligned_cols=122 Identities=20% Similarity=0.294 Sum_probs=80.2
Q ss_pred CcccHHHHHHHHHHCCCCEEEE------ccc-------CCccCCCCceee-eccchhHHHHHHHHHHcCCEEEEecCcee
Q 003498 60 SPEMWPDLIQKAKDGGLDVIQT------YVF-------WNGHEPSPGKYY-FEGNYDLVKFIKLAKQAGLYVNLRIGPYV 125 (815)
Q Consensus 60 ~~e~W~d~l~k~Ka~GlN~I~t------yvf-------Wn~HEp~~G~yd-F~G~~dL~~fl~la~~~GL~ViLR~GPyi 125 (815)
.+..-.+.|.+++++|+|||-. |.+ |..-- ||.+- =.|..=|...|++|++.||.|+.++=||.
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~ 139 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYR 139 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhcc
Confidence 6777789999999999999863 222 33322 44331 12444688889999999999999988887
Q ss_pred ccccCCCC---CCcccccC-CCee-eecCC-------hhhHHHHHHHHHHHH-HHHHhccccccCCCceEEeccccccc
Q 003498 126 CAEWNFGG---FPVWLKYI-PGIN-FRTEN-------GPFKAEMHKFTKKIV-DMMKAERLFESQGGPIILSQIENEYG 191 (815)
Q Consensus 126 caEw~~GG---~P~WL~~~-p~i~-~Rt~d-------~~y~~~~~~~~~~i~-~~l~~~~l~~~~gGpII~~QIENEyg 191 (815)
-|=-..-. -|.|+... |+.. .|... .++.-+++.|+..++ +.++++ .|=++|.+-=++
T Consensus 140 ~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Y--------dvDGIQfDd~fy 210 (418)
T COG1649 140 MAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNY--------DVDGIQFDDYFY 210 (418)
T ss_pred cCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCC--------CCCceecceeec
Confidence 66321111 37777753 5533 33332 245678888888776 555533 566789877655
No 61
>PRK05402 glycogen branching enzyme; Provisional
Probab=85.55 E-value=9.6 Score=47.20 Aligned_cols=54 Identities=24% Similarity=0.271 Sum_probs=37.1
Q ss_pred HHHHHHCCCCEEEE-cccCC----ccCCCCcee-----eeccchhHHHHHHHHHHcCCEEEEec
Q 003498 68 IQKAKDGGLDVIQT-YVFWN----GHEPSPGKY-----YFEGNYDLVKFIKLAKQAGLYVNLRI 121 (815)
Q Consensus 68 l~k~Ka~GlN~I~t-yvfWn----~HEp~~G~y-----dF~G~~dL~~fl~la~~~GL~ViLR~ 121 (815)
|.-+|++|+|+|+. +|+=. .|--.+..| .|.+..||.+|++.|+++||.|||-.
T Consensus 272 ~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 272 IPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 35669999999996 56411 111111111 24556799999999999999999984
No 62
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=84.42 E-value=0.24 Score=58.94 Aligned_cols=67 Identities=13% Similarity=0.121 Sum_probs=51.9
Q ss_pred hhhhcccccccCCcccccccccCCCCCCCCCCeeeee-cCCCCeEeEEEeeecCCCcccCCCccccccccCchhHHHhhh
Q 003498 732 IDSVCAYMYEWQPTLINWQLHASGKVNKPLRPKAHLM-CGPGQKIKSIKFASFGTPEGVCGSYRQGSCHAFHSYDAFQRV 810 (815)
Q Consensus 732 ~~~vc~~~~e~~p~~~~~~~~~~~~~~~~~~~~~~l~-C~~g~~is~i~faSfG~p~G~Cg~~~~g~c~a~~s~~~v~k~ 810 (815)
.+.+|.+--++|.- .+...+. |.++-+++.|.+|+||+.+++|+.|..+.|.++++.-++.+.
T Consensus 310 ~dgl~~~pk~ghlk----------------~~hts~d~~ep~lv~gd~~~~kyg~~~~~C~~Fl~n~~~~~~~~v~f~~~ 373 (649)
T KOG0496|consen 310 LDGLLRQPKYGHLK----------------PLHTSYDYCEPALVAGDITTAKYGNLREACAAFLSNNNGAPAAPVPFNKP 373 (649)
T ss_pred cchhhcCCCccccc----------------cchhhhhhcCccccccCcccccccchhhHHHHHHhcCCCCCCCccccCCC
Confidence 34677776666642 2223333 456999999999999999999999999999999999888887
Q ss_pred cCCC
Q 003498 811 CIFS 814 (815)
Q Consensus 811 C~gk 814 (815)
|..+
T Consensus 374 ~y~~ 377 (649)
T KOG0496|consen 374 KYRL 377 (649)
T ss_pred cccc
Confidence 6543
No 63
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=82.46 E-value=2.1 Score=42.87 Aligned_cols=124 Identities=19% Similarity=0.182 Sum_probs=72.3
Q ss_pred HHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCceeccccCCCCCCcccccCCCeeee
Q 003498 68 IQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFR 147 (815)
Q Consensus 68 l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~GPyicaEw~~GG~P~WL~~~p~i~~R 147 (815)
|+.++++|++.|+............ ..+++++.++++++||.+..--.+ . .+. .+....+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~-~--~~~----------~~~~~~~ 60 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPP-T--NFW----------SPDEENG 60 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEE-E--SSS----------CTGTTST
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEecc-c--ccc----------ccccccc
Confidence 5789999999999866543322111 347999999999999996632111 1 010 0111134
Q ss_pred cCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEeccc--ccccCc--ccccCCCCHHHHHHHHHHHHhcCCCc
Q 003498 148 TENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIE--NEYGPM--EYEIGAPGRSYTRWAAKMAVGLGTGV 219 (815)
Q Consensus 148 t~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIE--NEyg~~--~~~~~~~~~~Y~~~l~~~~~~~g~~v 219 (815)
+.+++ ++.....+.+.++..+ .+ |.+.|.+..- +..... ...+ +.-.+.++.+.+++.+.|+.+
T Consensus 61 ~~~~~-r~~~~~~~~~~i~~a~--~l----g~~~i~~~~g~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~i 128 (213)
T PF01261_consen 61 SANDE-REEALEYLKKAIDLAK--RL----GAKYIVVHSGRYPSGPEDDTEENW-ERLAENLRELAEIAEEYGVRI 128 (213)
T ss_dssp TSSSH-HHHHHHHHHHHHHHHH--HH----TBSEEEEECTTESSSTTSSHHHHH-HHHHHHHHHHHHHHHHHTSEE
T ss_pred Ccchh-hHHHHHHHHHHHHHHH--Hh----CCCceeecCcccccccCCCHHHHH-HHHHHHHHHHHhhhhhhcceE
Confidence 44444 6777778888888888 33 5677777643 111111 0001 123346677777777777654
No 64
>PRK12568 glycogen branching enzyme; Provisional
Probab=81.36 E-value=23 Score=43.86 Aligned_cols=55 Identities=24% Similarity=0.359 Sum_probs=39.3
Q ss_pred HHHHHHHCCCCEEEE-ccc-------CCccCCCCcee----eeccchhHHHHHHHHHHcCCEEEEecCc
Q 003498 67 LIQKAKDGGLDVIQT-YVF-------WNGHEPSPGKY----YFEGNYDLVKFIKLAKQAGLYVNLRIGP 123 (815)
Q Consensus 67 ~l~k~Ka~GlN~I~t-yvf-------Wn~HEp~~G~y----dF~G~~dL~~fl~la~~~GL~ViLR~GP 123 (815)
.|.-+|++|+|+|+. +|+ |.+. | -|-| .|....|+.+|++.|+++||.|||-.=|
T Consensus 275 ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~-~-~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 275 LIPYVQQLGFTHIELLPITEHPFGGSWGYQ-P-LGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHcCCCEEEECccccCCCCCCCCCC-C-CcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 467789999999996 443 3221 0 0111 3455679999999999999999998544
No 65
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=81.12 E-value=2.6 Score=49.46 Aligned_cols=61 Identities=10% Similarity=0.220 Sum_probs=43.0
Q ss_pred cccHH---HHHHHHHHCCCCEEEE-cccCCc-----cCCCCce-e-------------eeccchhHHHHHHHHHHcCCEE
Q 003498 61 PEMWP---DLIQKAKDGGLDVIQT-YVFWNG-----HEPSPGK-Y-------------YFEGNYDLVKFIKLAKQAGLYV 117 (815)
Q Consensus 61 ~e~W~---d~l~k~Ka~GlN~I~t-yvfWn~-----HEp~~G~-y-------------dF~G~~dL~~fl~la~~~GL~V 117 (815)
.+.|. +.|.-+|++|+++|-+ +++-+. |--.+-- | .|....||.++|+.|++.||+|
T Consensus 18 ~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~v 97 (479)
T PRK09441 18 GKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKV 97 (479)
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEE
Confidence 35575 4567789999999986 465442 2222211 2 2345679999999999999999
Q ss_pred EEec
Q 003498 118 NLRI 121 (815)
Q Consensus 118 iLR~ 121 (815)
||-.
T Consensus 98 i~D~ 101 (479)
T PRK09441 98 YADV 101 (479)
T ss_pred EEEE
Confidence 9985
No 66
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=81.00 E-value=27 Score=43.51 Aligned_cols=61 Identities=21% Similarity=0.195 Sum_probs=43.9
Q ss_pred ccHHHHHHHHHHCCCCEEEE-ccc-------CCccCC---CCceeeeccchhHHHHHHHHHHcCCEEEEecCc
Q 003498 62 EMWPDLIQKAKDGGLDVIQT-YVF-------WNGHEP---SPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGP 123 (815)
Q Consensus 62 e~W~d~l~k~Ka~GlN~I~t-yvf-------Wn~HEp---~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~GP 123 (815)
+.|++.|..+|++|+|+|+. .|+ |.++-. .+ .-.|....||.+||+.|+++||.|||-.=|
T Consensus 251 ~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~-~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~ 322 (758)
T PLN02447 251 EFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAV-SSRSGTPEDLKYLIDKAHSLGLRVLMDVVH 322 (758)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccc-ccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 44788999999999999996 332 333210 00 113555679999999999999999998533
No 67
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=80.30 E-value=10 Score=44.67 Aligned_cols=66 Identities=18% Similarity=0.282 Sum_probs=43.1
Q ss_pred EEEeeCCCCCcccHHHHHHHHH-HCCCCEEEEcccCCcc--------C-CCCc--eeeeccchhHHHHHHHHHHcCCEEE
Q 003498 51 SGSIHYPRSSPEMWPDLIQKAK-DGGLDVIQTYVFWNGH--------E-PSPG--KYYFEGNYDLVKFIKLAKQAGLYVN 118 (815)
Q Consensus 51 sG~iHy~R~~~e~W~d~l~k~K-a~GlN~I~tyvfWn~H--------E-p~~G--~ydF~G~~dL~~fl~la~~~GL~Vi 118 (815)
-|+=|.-...++.|+..|+.++ +.|+.-|+. |++- | ..+| .|||+ .||.+++...+.||+-.
T Consensus 28 ~~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~---h~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~ 101 (486)
T PF01229_consen 28 VGSGRANLLLRADWQEQLRELQEELGFRYVRF---HGLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPF 101 (486)
T ss_dssp EEES-GGGGGBHHHHHHHHHHHCCS--SEEEE---S-TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEE
T ss_pred cCCCchHHHhhHHHHHHHHHHHhccCceEEEE---EeeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEE
Confidence 3444555567788999999887 779999987 4332 1 1233 39999 89999999999999987
Q ss_pred EecC
Q 003498 119 LRIG 122 (815)
Q Consensus 119 LR~G 122 (815)
+..|
T Consensus 102 vel~ 105 (486)
T PF01229_consen 102 VELG 105 (486)
T ss_dssp EEE-
T ss_pred EEEE
Confidence 7765
No 68
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=80.01 E-value=6 Score=51.62 Aligned_cols=113 Identities=14% Similarity=0.229 Sum_probs=72.5
Q ss_pred cEEECCeEeEEEEE---EeeCCCC--CcccHHHHHHHHHHCCCCEEEE-ccc-CC---ccCCCCceee----e----ccc
Q 003498 39 AIAINGKRRILISG---SIHYPRS--SPEMWPDLIQKAKDGGLDVIQT-YVF-WN---GHEPSPGKYY----F----EGN 100 (815)
Q Consensus 39 ~~~idG~~~~l~sG---~iHy~R~--~~e~W~d~l~k~Ka~GlN~I~t-yvf-Wn---~HEp~~G~yd----F----~G~ 100 (815)
.|.|||++++.+.+ .-..++. +-+.|++.|+.+|++|.|+|-. +++ =. ..=....++. | .|.
T Consensus 104 ~L~i~~~~~lPl~~i~iqTvlsK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~ 183 (1464)
T TIGR01531 104 MLYINADKFLPLDSIALQTVLAKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGK 183 (1464)
T ss_pred eeEECCCcccCcCceeeeeehhhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcH
Confidence 45666644444332 2234553 4577999999999999999985 455 11 1111222332 3 366
Q ss_pred hhHHHHHHHHHHc-CCEEEEecCceeccccCCCCCC-cccccCCCeeeecCChhhHHHH
Q 003498 101 YDLVKFIKLAKQA-GLYVNLRIGPYVCAEWNFGGFP-VWLKYIPGINFRTENGPFKAEM 157 (815)
Q Consensus 101 ~dL~~fl~la~~~-GL~ViLR~GPyicaEw~~GG~P-~WL~~~p~i~~Rt~d~~y~~~~ 157 (815)
.|+.++++.+++. ||++|+-. =||+-+.= .||.+.|+.-.-..+.|++++.
T Consensus 184 ~d~~~lV~~~h~~~Gm~~ilDv------V~NHTa~ds~Wl~eHPEa~Yn~~~sP~L~~A 236 (1464)
T TIGR01531 184 NDVQALVEKLHRDWNVLSITDI------VFNHTANNSPWLLEHPEAAYNCITSPHLRPA 236 (1464)
T ss_pred HHHHHHHHHHHHhcCCEEEEEe------eecccccCCHHHHhChHhhcCCCCCchhhhH
Confidence 7999999999996 99999874 25665553 5888888755555566666543
No 69
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=79.99 E-value=14 Score=39.60 Aligned_cols=54 Identities=13% Similarity=0.095 Sum_probs=38.9
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHc-CCEEEE
Q 003498 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQA-GLYVNL 119 (815)
Q Consensus 62 e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~-GL~ViL 119 (815)
.-|++.|+.+|++|++.|+.-+....-.. .......++.++.++++++ ++.+.+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWL----SRPLKKERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccC----CCCCCHHHHHHHHHHHHHcCCCcEEE
Confidence 67999999999999999998664321111 1111346899999999999 766554
No 70
>PRK14705 glycogen branching enzyme; Provisional
Probab=79.64 E-value=29 Score=45.49 Aligned_cols=56 Identities=20% Similarity=0.150 Sum_probs=38.7
Q ss_pred HHHHHHHHCCCCEEEE-ccc-------CCccC--CCCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 003498 66 DLIQKAKDGGLDVIQT-YVF-------WNGHE--PSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (815)
Q Consensus 66 d~l~k~Ka~GlN~I~t-yvf-------Wn~HE--p~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~ 121 (815)
+.|.-+|++|+|+|+. +|+ |.+.- ...=.=.|....||.+||+.|+++||.|||-.
T Consensus 770 ~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 770 ELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3468899999999996 453 42210 00001124456799999999999999999873
No 71
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=79.58 E-value=2 Score=45.74 Aligned_cols=57 Identities=23% Similarity=0.318 Sum_probs=39.6
Q ss_pred HHHHHHHHHCCCCEEEEcccCCccCCCCc----ee-e----eccchhHHHHHHHHHHcCCEEEEec
Q 003498 65 PDLIQKAKDGGLDVIQTYVFWNGHEPSPG----KY-Y----FEGNYDLVKFIKLAKQAGLYVNLRI 121 (815)
Q Consensus 65 ~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G----~y-d----F~G~~dL~~fl~la~~~GL~ViLR~ 121 (815)
.+.|.-+|++|+|+|..-=++...+..-| -| + |....||.++++.|++.||+|||-.
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 35678899999999997544332211111 11 1 3345799999999999999999874
No 72
>PRK01060 endonuclease IV; Provisional
Probab=79.35 E-value=40 Score=36.11 Aligned_cols=93 Identities=14% Similarity=0.212 Sum_probs=59.0
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEE---EEecCceeccccCCCCCCccccc
Q 003498 64 WPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYV---NLRIGPYVCAEWNFGGFPVWLKY 140 (815)
Q Consensus 64 W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~V---iLR~GPyicaEw~~GG~P~WL~~ 140 (815)
+++.|++++++|++.||..+- +-|.-..+.++- .++.++-+++++.||.+ .+ -+||.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~-~p~~~~~~~~~~---~~~~~lk~~~~~~gl~~~~~~~-h~~~~--------------- 73 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTG-NPQQWKRKPLEE---LNIEAFKAACEKYGISPEDILV-HAPYL--------------- 73 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECC-CCCCCcCCCCCH---HHHHHHHHHHHHcCCCCCceEE-ecceE---------------
Confidence 889999999999999998543 112212222222 26888999999999973 32 23331
Q ss_pred CCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEec
Q 003498 141 IPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQ 185 (815)
Q Consensus 141 ~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~Q 185 (815)
+.+-+.|+..+++..+.+++.++..+ .+ |-++|.+.
T Consensus 74 ---~nl~~~d~~~r~~s~~~~~~~i~~A~--~l----ga~~vv~h 109 (281)
T PRK01060 74 ---INLGNPNKEILEKSRDFLIQEIERCA--AL----GAKLLVFH 109 (281)
T ss_pred ---ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12234567777777777777777766 33 45555553
No 73
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=79.30 E-value=25 Score=40.25 Aligned_cols=141 Identities=15% Similarity=0.125 Sum_probs=71.7
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeecc-chhHHHHHHHHHHcCCEEEE-ecCceeccccCCCCCCcc
Q 003498 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEG-NYDLVKFIKLAKQAGLYVNL-RIGPYVCAEWNFGGFPVW 137 (815)
Q Consensus 60 ~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G-~~dL~~fl~la~~~GL~ViL-R~GPyicaEw~~GG~P~W 137 (815)
++....+++++++++|++.|+.. ..+ ..|-..+... ..++.++-+++++.||.|.. -++-+.+..|..|
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~---~~d-l~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g----- 100 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFH---DDD-LIPFGAPPQERDQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDG----- 100 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEec---ccc-cCCCCCChhHHHHHHHHHHHHHHHhCCeEEEeeccccCCccccCC-----
Confidence 34457799999999999999963 111 0111111110 23578899999999999663 3321111112122
Q ss_pred cccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEeccc---ccccCcccccCC---CCHHHHHHHHHH
Q 003498 138 LKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIE---NEYGPMEYEIGA---PGRSYTRWAAKM 211 (815)
Q Consensus 138 L~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIE---NEyg~~~~~~~~---~~~~Y~~~l~~~ 211 (815)
.+=+.|+..+++.-+++++.++.-+ .| |.+.|.+--- -||..- ..+.. .-.+.++++.+.
T Consensus 101 -------~las~d~~vR~~ai~~~kraId~A~--eL----Ga~~v~v~~G~~g~~~~~~-~d~~~a~~~~~e~L~~lae~ 166 (382)
T TIGR02631 101 -------GFTSNDRSVRRYALRKVLRNMDLGA--EL----GAETYVVWGGREGAEYDGA-KDVRAALDRMREALNLLAAY 166 (382)
T ss_pred -------CCCCCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEEccCCCCCcCccc-cCHHHHHHHHHHHHHHHHHH
Confidence 2334466666555555566666655 33 4554443221 111100 00011 123344555566
Q ss_pred HHhcCCCcceee
Q 003498 212 AVGLGTGVPWIM 223 (815)
Q Consensus 212 ~~~~g~~vP~~~ 223 (815)
+.+.|.+|.+..
T Consensus 167 A~~~G~GV~laL 178 (382)
T TIGR02631 167 AEDQGYGLRFAL 178 (382)
T ss_pred HHhhCCCcEEEE
Confidence 677666665544
No 74
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=79.15 E-value=26 Score=37.32 Aligned_cols=49 Identities=16% Similarity=0.272 Sum_probs=37.7
Q ss_pred eeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEE
Q 003498 54 IHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNL 119 (815)
Q Consensus 54 iHy~R~~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViL 119 (815)
+.|-+.+ ++++|++++++|++.||.. . |. ..++.++.++++++||.+..
T Consensus 10 ~~~~~~~---l~~~l~~~a~~Gf~~VEl~---~---~~--------~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 10 MLFGEYD---FLARFEKAAQCGFRGVEFM---F---PY--------DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred hhccCCC---HHHHHHHHHHhCCCEEEEc---C---CC--------CCCHHHHHHHHHHcCCcEEE
Confidence 4444444 7889999999999999983 1 11 13799999999999999864
No 75
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=78.73 E-value=13 Score=39.88 Aligned_cols=125 Identities=16% Similarity=0.260 Sum_probs=73.2
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEE-EecCceeccccCCCCCCcccccC
Q 003498 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVN-LRIGPYVCAEWNFGGFPVWLKYI 141 (815)
Q Consensus 63 ~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vi-LR~GPyicaEw~~GG~P~WL~~~ 141 (815)
-|.+.++.++++|++.|+..+. ..|+ ....++++ ..++.++.++++++||.|. +..+.. ..++
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~-------~~~~------ 85 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSAH-------RRFP------ 85 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEecccc-------cccC------
Confidence 5999999999999999999532 1111 01122333 2468899999999999875 332110 0011
Q ss_pred CCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEecccccccCcccccCC-------CCHHHHHHHHHHHHh
Q 003498 142 PGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIGA-------PGRSYTRWAAKMAVG 214 (815)
Q Consensus 142 p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~~-------~~~~Y~~~l~~~~~~ 214 (815)
+-+.|+.-++.....+++.++..+ .+ |.++|.+. |. ...++. .-.+.++.+.+++++
T Consensus 86 ----~~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~i~~~-----~~-~~~~~~~~~~~~~~~~~~l~~l~~~A~~ 149 (283)
T PRK13209 86 ----LGSEDDAVRAQALEIMRKAIQLAQ--DL----GIRVIQLA-----GY-DVYYEQANNETRRRFIDGLKESVELASR 149 (283)
T ss_pred ----CCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEC-----Cc-cccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 113455556666667777777777 33 66777542 11 000111 113456777888877
Q ss_pred cCCCc
Q 003498 215 LGTGV 219 (815)
Q Consensus 215 ~g~~v 219 (815)
.|+.+
T Consensus 150 ~GV~i 154 (283)
T PRK13209 150 ASVTL 154 (283)
T ss_pred hCCEE
Confidence 77654
No 76
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=78.23 E-value=3 Score=47.23 Aligned_cols=72 Identities=31% Similarity=0.266 Sum_probs=46.9
Q ss_pred EEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCceecc
Q 003498 50 ISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCA 127 (815)
Q Consensus 50 ~sG~iHy~R~~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~GPyica 127 (815)
++=|+.....+.+.....|++|++.|+..| |=++|.|+...=+. ...+..+++.|++.||.|++-+.|=+..
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~i----FTSL~ipe~~~~~~--~~~~~~l~~~a~~~~~~v~~Disp~~l~ 73 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRI----FTSLHIPEDDPEDY--LERLKELLKLAKELGMEVIADISPKVLK 73 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEE----EEEE---------H--HHHHHHHHHHHHHCT-EEEEEE-CCHHH
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEE----ECCCCcCCCCHHHH--HHHHHHHHHHHHHCCCEEEEECCHHHHH
Confidence 455677777788899999999999999555 55899998533121 1378899999999999999998775543
No 77
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=77.83 E-value=2.4 Score=42.92 Aligned_cols=63 Identities=27% Similarity=0.213 Sum_probs=29.7
Q ss_pred CCceEEEEECCeeccccccccccCCCCCcccccCccccccccCCCCCCceeEEecCCCcccccCcEEEEEeecC
Q 003498 646 SMGKGQVWVNGQSIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHVPRSWLKPTGNLLVVFEEWG 719 (815)
Q Consensus 646 g~gKG~~wVNG~niGRYWp~~~~~G~~~~c~y~G~y~~~kc~~~cg~PqqtlYhVP~~~Lk~g~N~LVvfEe~g 719 (815)
..++=+|.||| ..+..+.... | .++|-||+ -+-+|+.+.--|.||++.|+.|.|+|.|=-..|
T Consensus 91 ~~~~~~V~vNg-~~~~~~~~~~--~-~d~~~~r~-------g~~~G~~~~~~~~ipa~~L~~G~Nti~lt~~~g 153 (167)
T PF14683_consen 91 AGGRLQVSVNG-WSGPFPSAPF--G-NDNAIYRS-------GIHRGNYRLYEFDIPASLLKAGENTITLTVPSG 153 (167)
T ss_dssp TT-EEEEEETT-EE--------------S--GGG-------T---S---EEEEEE-TTSS-SEEEEEEEEEE-S
T ss_pred CCCCEEEEEcC-ccCCcccccc--C-CCCceeeC-------ceecccEEEEEEEEcHHHEEeccEEEEEEEccC
Confidence 44677999999 6676653111 1 12344444 123355666668899999999999997643333
No 78
>KOG4729 consensus Galactoside-binding lectin [General function prediction only]
Probab=77.60 E-value=3.1 Score=44.80 Aligned_cols=52 Identities=21% Similarity=0.460 Sum_probs=42.4
Q ss_pred CCeeeeecCCCCeEeEEEeeecCC--CcccCC--Ccccc--ccccCchhHHHhhhcCCCC
Q 003498 762 RPKAHLMCGPGQKIKSIKFASFGT--PEGVCG--SYRQG--SCHAFHSYDAFQRVCIFSV 815 (815)
Q Consensus 762 ~~~~~l~C~~g~~is~i~faSfG~--p~G~Cg--~~~~g--~c~a~~s~~~v~k~C~gk~ 815 (815)
+..++|+||.|.+|| |+=|=||. +. .|- +++.- +|-.+.|++|+++.|-+|+
T Consensus 43 G~~i~L~CP~~dvIs-v~sanYGR~~~~-iC~pd~~~~~Si~C~~p~s~~i~~~rCnnr~ 100 (265)
T KOG4729|consen 43 GERITLSCPRGDVIS-VQSANYGRFSDK-ICDPDPGREESINCYLPKSFSILSSRCNNRR 100 (265)
T ss_pred CceEEEEcCCCCEEE-EEecccCccccc-ccCCccccccchhccChHHHHHHHHhcCCCc
Confidence 557999999999986 78899997 33 883 44444 5999999999999998875
No 79
>PRK09989 hypothetical protein; Provisional
Probab=76.80 E-value=24 Score=37.51 Aligned_cols=43 Identities=19% Similarity=0.341 Sum_probs=34.4
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEE
Q 003498 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNL 119 (815)
Q Consensus 63 ~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViL 119 (815)
-.+++|++++++|++.||+..+|. .+..+..++.+++||.|..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEE
Confidence 378999999999999999844332 2467788889999999774
No 80
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=75.93 E-value=13 Score=37.62 Aligned_cols=56 Identities=21% Similarity=0.201 Sum_probs=31.7
Q ss_pred ceEEecCcceEEEEEECCEEEEEEe----cc-cCCC--eeEEEeeeeccCCccEEEEEEeccCC
Q 003498 497 PVLTVMSAGHALHVFVNGQLAGTAY----GS-LEFP--KLTFTEGVNMRAGINKIALLSIAVGL 553 (815)
Q Consensus 497 ~~L~v~~~~d~~~vfVNg~~vGs~~----g~-~~~~--~~~~~~~v~l~~G~n~L~lLven~Gr 553 (815)
..|.|...+ +-.+||||+.||... .+ .... -.++...--|++|.|+|.+++-+-..
T Consensus 6 A~l~isa~g-~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg~gw~ 68 (172)
T PF08531_consen 6 ARLYISALG-RYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLGNGWY 68 (172)
T ss_dssp -EEEEEEES-EEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--TTEEEEEEEEEE--S
T ss_pred EEEEEEeCe-eEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCCCCCEEEEEEeCCcc
Confidence 466666544 668999999999765 11 1111 12333333488899999999976443
No 81
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=75.80 E-value=4.3 Score=43.67 Aligned_cols=52 Identities=23% Similarity=0.434 Sum_probs=39.4
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 003498 61 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (815)
Q Consensus 61 ~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~G 122 (815)
+...++.|+.+|+.||++||+ ..|..+.+ ..+..++|+.|+++|++|+--.|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEi---------SdGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEI---------SDGTIDLP-EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEe---------cCCceeCC-HHHHHHHHHHHHHCCCEEeeccc
Confidence 667899999999999999998 44555544 34678999999999999999887
No 82
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=74.70 E-value=31 Score=38.84 Aligned_cols=141 Identities=18% Similarity=0.245 Sum_probs=89.5
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHH---HcCCEEEEecCceeccccCCCCCC
Q 003498 59 SSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAK---QAGLYVNLRIGPYVCAEWNFGGFP 135 (815)
Q Consensus 59 ~~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~---~~GL~ViLR~GPyicaEw~~GG~P 135 (815)
..|+..+.-++.||+.||+.--.|-.| |.|++-|++-++..- +.+|...|. |.+--|..
T Consensus 55 ~~p~v~~~Q~~lA~~~GI~gF~~~~Yw-----------f~gk~lLe~p~~~~l~~~~~d~pFcl~---WAN~~w~~---- 116 (345)
T PF14307_consen 55 RDPEVMEKQAELAKEYGIDGFCFYHYW-----------FNGKRLLEKPLENLLASKEPDFPFCLC---WANENWTR---- 116 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEeee-----------cCCchHHHHHHHHHHhcCCCCCcEEEE---ECCChhhh----
Confidence 466778889999999999999888777 456777877776654 345655665 22222211
Q ss_pred cccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEecccccccCcccccCCCCHHHHHHHHHHHHhc
Q 003498 136 VWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIGAPGRSYTRWAAKMAVGL 215 (815)
Q Consensus 136 ~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~~ 215 (815)
.|-.....+.+-.... =.+..+++++.|++.+++..++--+|=||+++=--.+. ..-++.++.+++.|+++
T Consensus 117 ~w~g~~~~~l~~q~y~-~~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~~--------pd~~~~~~~wr~~a~~~ 187 (345)
T PF14307_consen 117 RWDGRNNEILIEQKYS-GEDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGDI--------PDIKEMIERWREEAKEA 187 (345)
T ss_pred ccCCCCccccccccCC-chhHHHHHHHHHHHHhCCCCceeECCEEEEEEECcccc--------cCHHHHHHHHHHHHHHc
Confidence 1222222221111111 01234677888889999877766788899987322111 24678899999999999
Q ss_pred CCCcceeecCC
Q 003498 216 GTGVPWIMCKQ 226 (815)
Q Consensus 216 g~~vP~~~~~~ 226 (815)
|++-+.+....
T Consensus 188 G~~giyii~~~ 198 (345)
T PF14307_consen 188 GLPGIYIIAVQ 198 (345)
T ss_pred CCCceEEEEEe
Confidence 99876555443
No 83
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=74.13 E-value=5.7 Score=47.47 Aligned_cols=53 Identities=26% Similarity=0.379 Sum_probs=39.0
Q ss_pred HHHHHHHHCCCCEEEE-ccc-------CCcc-----CCCCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 003498 66 DLIQKAKDGGLDVIQT-YVF-------WNGH-----EPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (815)
Q Consensus 66 d~l~k~Ka~GlN~I~t-yvf-------Wn~H-----Ep~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~ 121 (815)
+.|.-+|++|+|+|+. +|+ |.++ .+.+ .|.+..+|.+||+.|++.||.|||-.
T Consensus 115 ~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~---~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 115 EKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN---AYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4688899999999996 453 3221 1111 24556799999999999999999984
No 84
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=73.89 E-value=43 Score=35.73 Aligned_cols=130 Identities=16% Similarity=0.141 Sum_probs=69.9
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCceeccccCCCCCCcccccCC
Q 003498 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIP 142 (815)
Q Consensus 63 ~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~GPyicaEw~~GG~P~WL~~~p 142 (815)
.|++.|+.++++|++.||...-. .|+-.+ +++ ..++.++-++++++||.|.. .+|. .+++|..+.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~-~~~~~~---~~~-~~~~~~l~~~~~~~gl~v~s-~~~~------~~~~~~~~~--- 78 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGR-PHAFAP---DLK-AGGIKQIKALAQTYQMPIIG-YTPE------TNGYPYNMM--- 78 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCC-cccccc---ccC-chHHHHHHHHHHHcCCeEEE-ecCc------ccCcCcccc---
Confidence 59999999999999999983210 111111 121 24688899999999999753 2221 123433322
Q ss_pred CeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEeccccc-cc-CcccccCCCCHHHHHHHHHHHHhcCCCc
Q 003498 143 GINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENE-YG-PMEYEIGAPGRSYTRWAAKMAVGLGTGV 219 (815)
Q Consensus 143 ~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENE-yg-~~~~~~~~~~~~Y~~~l~~~~~~~g~~v 219 (815)
..++.-+++..+.+++.++.-+ .+ |.+.|.+-.-.. +. .....+ +.-.+.++.|.+++.+.|+.+
T Consensus 79 -----~~~~~~r~~~~~~~~~~i~~a~--~l----Ga~~i~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~l 145 (275)
T PRK09856 79 -----LGDEHMRRESLDMIKLAMDMAK--EM----NAGYTLISAAHAGYLTPPNVIW-GRLAENLSELCEYAENIGMDL 145 (275)
T ss_pred -----CCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEEcCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHcCCEE
Confidence 1234444545555556666555 22 455554421110 00 000001 122346788888888877644
No 85
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=73.51 E-value=51 Score=35.50 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=20.9
Q ss_pred cccHHHHHHHHHHCCCCEEEEccc
Q 003498 61 PEMWPDLIQKAKDGGLDVIQTYVF 84 (815)
Q Consensus 61 ~e~W~d~l~k~Ka~GlN~I~tyvf 84 (815)
.--|+++|.-+|++|++-|+.-|-
T Consensus 17 ~~sW~erl~~AK~~GFDFvEmSvD 40 (287)
T COG3623 17 GFSWLERLALAKELGFDFVEMSVD 40 (287)
T ss_pred CCCHHHHHHHHHHcCCCeEEEecc
Confidence 345999999999999999998664
No 86
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=73.38 E-value=58 Score=34.35 Aligned_cols=43 Identities=16% Similarity=0.199 Sum_probs=35.4
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEE
Q 003498 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNL 119 (815)
Q Consensus 63 ~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViL 119 (815)
-+++.+++++++|++.|+....+ ..++.++.++++++||.+..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~--------------~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY--------------DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc--------------cCCHHHHHHHHHHcCCeEEE
Confidence 48999999999999999984321 13588899999999999764
No 87
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=72.99 E-value=11 Score=42.23 Aligned_cols=109 Identities=22% Similarity=0.299 Sum_probs=69.2
Q ss_pred CcccHHHHHHHHHHCCCCEEEEc-------ccCCccCCCCceeeec-c-chhHHHHHHHHHHcCCEEEEecCcee---cc
Q 003498 60 SPEMWPDLIQKAKDGGLDVIQTY-------VFWNGHEPSPGKYYFE-G-NYDLVKFIKLAKQAGLYVNLRIGPYV---CA 127 (815)
Q Consensus 60 ~~e~W~d~l~k~Ka~GlN~I~ty-------vfWn~HEp~~G~ydF~-G-~~dL~~fl~la~~~GL~ViLR~GPyi---ca 127 (815)
.++.-+..|+.+++.|+|+|-+= |.+....|..-+..-. . ..|+.++++.++++|+|+|.|+=-|- -|
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~la 90 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFKDPVLA 90 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEecChHHh
Confidence 34567889999999999988742 3454444433222211 1 36999999999999999999963221 01
Q ss_pred ccCCCCCCccccc-CCCeeeecCC-----hhhHHHHHHHHHHHHHHHHhcc
Q 003498 128 EWNFGGFPVWLKY-IPGINFRTEN-----GPFKAEMHKFTKKIVDMMKAER 172 (815)
Q Consensus 128 Ew~~GG~P~WL~~-~p~i~~Rt~d-----~~y~~~~~~~~~~i~~~l~~~~ 172 (815)
+. -|.|-.. ..|-..|..+ .||.+++.+|.-.|++.+++.+
T Consensus 91 ~~----~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~G 137 (316)
T PF13200_consen 91 EA----HPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKLG 137 (316)
T ss_pred hh----ChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHcC
Confidence 11 3455442 1121122221 2688999999999999988553
No 88
>PRK12313 glycogen branching enzyme; Provisional
Probab=70.57 E-value=8.2 Score=46.98 Aligned_cols=55 Identities=18% Similarity=0.226 Sum_probs=38.1
Q ss_pred HHHHHHHCCCCEEEE-ccc-------CCccCC--CCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 003498 67 LIQKAKDGGLDVIQT-YVF-------WNGHEP--SPGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (815)
Q Consensus 67 ~l~k~Ka~GlN~I~t-yvf-------Wn~HEp--~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~ 121 (815)
.|.-+|++|+|+|+. +|+ |.+.-. ..=.-.|.+..||.+||+.|+++||.|||-.
T Consensus 176 ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 176 LIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 358889999999995 553 211000 0000135566899999999999999999984
No 89
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=67.70 E-value=9.6 Score=41.91 Aligned_cols=67 Identities=22% Similarity=0.342 Sum_probs=48.0
Q ss_pred CCcccHHHHHHHHHHCCCC--EEEEcccCCccCCCCceeeeccc--hhHHHHHHHHHHcCCEEEEecCceec
Q 003498 59 SSPEMWPDLIQKAKDGGLD--VIQTYVFWNGHEPSPGKYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPYVC 126 (815)
Q Consensus 59 ~~~e~W~d~l~k~Ka~GlN--~I~tyvfWn~HEp~~G~ydF~G~--~dL~~fl~la~~~GL~ViLR~GPyic 126 (815)
...+...+.++++|+.||. +|..=..|-... .-+.|.|.-. -|..++++..++.|+++++..=|+|+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~-~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~ 91 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMKEF-QWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIA 91 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccccCC-cceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3667789999999999955 454444454221 1135655532 38999999999999999999877774
No 90
>PRK10785 maltodextrin glucosidase; Provisional
Probab=67.41 E-value=9.9 Score=46.01 Aligned_cols=57 Identities=18% Similarity=0.258 Sum_probs=41.0
Q ss_pred HHHHHHHHHCCCCEEEE-cccCC--ccCCCCcee-----eeccchhHHHHHHHHHHcCCEEEEec
Q 003498 65 PDLIQKAKDGGLDVIQT-YVFWN--GHEPSPGKY-----YFEGNYDLVKFIKLAKQAGLYVNLRI 121 (815)
Q Consensus 65 ~d~l~k~Ka~GlN~I~t-yvfWn--~HEp~~G~y-----dF~G~~dL~~fl~la~~~GL~ViLR~ 121 (815)
.+.|.-+|++|+|+|-. +||=+ .|---..-| .|.+..||.++++.|++.||+|||-.
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45688899999999996 56633 121111111 24566799999999999999999874
No 91
>PLN02960 alpha-amylase
Probab=67.41 E-value=11 Score=47.24 Aligned_cols=57 Identities=23% Similarity=0.208 Sum_probs=39.8
Q ss_pred HHHHHHHHHCCCCEEEE-ccc-------CCccCC--CCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 003498 65 PDLIQKAKDGGLDVIQT-YVF-------WNGHEP--SPGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (815)
Q Consensus 65 ~d~l~k~Ka~GlN~I~t-yvf-------Wn~HEp--~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~ 121 (815)
+++|.-+|++|+|+|+. .|+ |.+.-. ..=.-.|....||.+||+.|+++||.|||-.
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 34688999999999996 454 432100 0000123456799999999999999999985
No 92
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=67.19 E-value=10 Score=46.01 Aligned_cols=55 Identities=24% Similarity=0.383 Sum_probs=37.5
Q ss_pred HHHHHHHHCCCCEEEE-ccc---------------CCccC-----CCCceee----ec--cchhHHHHHHHHHHcCCEEE
Q 003498 66 DLIQKAKDGGLDVIQT-YVF---------------WNGHE-----PSPGKYY----FE--GNYDLVKFIKLAKQAGLYVN 118 (815)
Q Consensus 66 d~l~k~Ka~GlN~I~t-yvf---------------Wn~HE-----p~~G~yd----F~--G~~dL~~fl~la~~~GL~Vi 118 (815)
+.|.-+|++|+|+|+. +|+ |.+.- |. +.|- |- ...+|.+||+.|+++||.||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~-~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPE-GSYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcC-hhhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 4589999999999996 454 22210 10 0111 10 12689999999999999999
Q ss_pred Eec
Q 003498 119 LRI 121 (815)
Q Consensus 119 LR~ 121 (815)
|-.
T Consensus 247 lDv 249 (605)
T TIGR02104 247 MDV 249 (605)
T ss_pred EEE
Confidence 984
No 93
>PRK09505 malS alpha-amylase; Reviewed
Probab=66.17 E-value=12 Score=46.20 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=43.2
Q ss_pred HHHHHHHHHHCCCCEEEE-cccCCccCCC----Cc------------------eeeeccchhHHHHHHHHHHcCCEEEEe
Q 003498 64 WPDLIQKAKDGGLDVIQT-YVFWNGHEPS----PG------------------KYYFEGNYDLVKFIKLAKQAGLYVNLR 120 (815)
Q Consensus 64 W~d~l~k~Ka~GlN~I~t-yvfWn~HEp~----~G------------------~ydF~G~~dL~~fl~la~~~GL~ViLR 120 (815)
+.+.|.-+|++|+|+|-+ .++=+.|... .| .-.|....||.++++.|++.||+|||-
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 466788899999999985 5665544321 11 112445679999999999999999998
Q ss_pred cC
Q 003498 121 IG 122 (815)
Q Consensus 121 ~G 122 (815)
.=
T Consensus 312 ~V 313 (683)
T PRK09505 312 VV 313 (683)
T ss_pred EC
Confidence 53
No 94
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=65.54 E-value=11 Score=45.66 Aligned_cols=57 Identities=28% Similarity=0.347 Sum_probs=42.3
Q ss_pred CcccHHHHHHHHHHCCCCEEEE-ccc-------CCccCCCCceee------eccchhHHHHHHHHHHcCCEEEEe
Q 003498 60 SPEMWPDLIQKAKDGGLDVIQT-YVF-------WNGHEPSPGKYY------FEGNYDLVKFIKLAKQAGLYVNLR 120 (815)
Q Consensus 60 ~~e~W~d~l~k~Ka~GlN~I~t-yvf-------Wn~HEp~~G~yd------F~G~~dL~~fl~la~~~GL~ViLR 120 (815)
..|.=.+.|.-+|+||+++||. .|. |.+ .|..- |....||.+||+.|+++||-|||-
T Consensus 163 ~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGY----q~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 163 YFELAIELLPYLKELGITHIELMPVAEHPGDRSWGY----QGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCC----CcceeccccccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 3444567899999999999996 332 543 22222 334579999999999999999997
No 95
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=65.40 E-value=16 Score=40.35 Aligned_cols=68 Identities=21% Similarity=0.316 Sum_probs=53.0
Q ss_pred CCCCcccHHHHHHHHHHCCC--CEEEEcccCCccCCCCceeeecc--chhHHHHHHHHHHcCCEEEEecCceecc
Q 003498 57 PRSSPEMWPDLIQKAKDGGL--DVIQTYVFWNGHEPSPGKYYFEG--NYDLVKFIKLAKQAGLYVNLRIGPYVCA 127 (815)
Q Consensus 57 ~R~~~e~W~d~l~k~Ka~Gl--N~I~tyvfWn~HEp~~G~ydF~G--~~dL~~fl~la~~~GL~ViLR~GPyica 127 (815)
...+.+.-.+.++++++.|+ ++|.+=..|- ..-|.|.|.- --|..++++..++.|+++++.+=|+|+.
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~ 96 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINT 96 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCC
Confidence 44677788999999999995 5776666663 3456666653 2489999999999999999998888864
No 96
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=65.22 E-value=35 Score=39.33 Aligned_cols=89 Identities=18% Similarity=0.244 Sum_probs=59.2
Q ss_pred eCCCCCcccHHHHHHHHHHCCCCEEEEcccCCccCCCC----ceeeeccc---hhHHHHHHHHHHcCCEEEEecCceecc
Q 003498 55 HYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSP----GKYYFEGN---YDLVKFIKLAKQAGLYVNLRIGPYVCA 127 (815)
Q Consensus 55 Hy~R~~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~----G~ydF~G~---~dL~~fl~la~~~GL~ViLR~GPyica 127 (815)
+|+.++.+.-.+.++++++.|++.+.+==-|....... |.+.-.-. .-|..+++.+++.||+.=|+..|.+.+
T Consensus 51 ~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~ 130 (394)
T PF02065_consen 51 YYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVS 130 (394)
T ss_dssp HTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEE
T ss_pred cCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEecccccc
Confidence 45667777778899999999999888777787542222 33322211 139999999999999999999888765
Q ss_pred cc--CCCCCCcccccCCC
Q 003498 128 EW--NFGGFPVWLKYIPG 143 (815)
Q Consensus 128 Ew--~~GG~P~WL~~~p~ 143 (815)
+= -+-..|.|+...++
T Consensus 131 ~~S~l~~~hPdw~l~~~~ 148 (394)
T PF02065_consen 131 PDSDLYREHPDWVLRDPG 148 (394)
T ss_dssp SSSCHCCSSBGGBTCCTT
T ss_pred chhHHHHhCccceeecCC
Confidence 31 13347999987665
No 97
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=64.65 E-value=1.2e+02 Score=36.67 Aligned_cols=79 Identities=20% Similarity=0.271 Sum_probs=49.2
Q ss_pred ccHHHHHHHHHHCCCCEEEEc-ccCCccCCCCcee--------eeccc----hhHHHHHHHHHHcCCEEEEecCceeccc
Q 003498 62 EMWPDLIQKAKDGGLDVIQTY-VFWNGHEPSPGKY--------YFEGN----YDLVKFIKLAKQAGLYVNLRIGPYVCAE 128 (815)
Q Consensus 62 e~W~d~l~k~Ka~GlN~I~ty-vfWn~HEp~~G~y--------dF~G~----~dL~~fl~la~~~GL~ViLR~GPyicaE 128 (815)
+.=++.|..|++..||.|+.| ..|.+|.|-|+.= |+.++ .-+..+|+.|++.||.++.=--=|-+-+
T Consensus 118 ~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~ 197 (559)
T PF13199_consen 118 EDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAANN 197 (559)
T ss_dssp HHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEET
T ss_pred hhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhcccc
Confidence 456779999999999999999 8899999976533 23343 3577999999999999886433332223
Q ss_pred c--CCCCCCccccc
Q 003498 129 W--NFGGFPVWLKY 140 (815)
Q Consensus 129 w--~~GG~P~WL~~ 140 (815)
. .+|=.|.|.+.
T Consensus 198 ~~~~~gv~~eW~ly 211 (559)
T PF13199_consen 198 NYEEDGVSPEWGLY 211 (559)
T ss_dssp T--S--SS-GGBEE
T ss_pred CcccccCCchhhhh
Confidence 2 35667889864
No 98
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=64.14 E-value=11 Score=45.12 Aligned_cols=58 Identities=17% Similarity=0.173 Sum_probs=41.9
Q ss_pred cHHHHHHHHHHCCCCEEEE-cccCCccCCCCceee----------eccchhHHHHHHHHHHcCCEEEEecC
Q 003498 63 MWPDLIQKAKDGGLDVIQT-YVFWNGHEPSPGKYY----------FEGNYDLVKFIKLAKQAGLYVNLRIG 122 (815)
Q Consensus 63 ~W~d~l~k~Ka~GlN~I~t-yvfWn~HEp~~G~yd----------F~G~~dL~~fl~la~~~GL~ViLR~G 122 (815)
-+.+.|.-+|++|+|+|-+ .+|-+-.. ...|+ |....||.++++.|+++||+|||-.=
T Consensus 28 gi~~~l~yl~~lG~~~i~l~Pi~~~~~~--~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 28 GIIEKLDYLKKLGVDYIWLNPFYVSPQK--DNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred HHHHhHHHHHHcCCCEEEECCcccCCCC--CCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 3667888999999999986 45432110 01222 44567999999999999999998743
No 99
>PLN00196 alpha-amylase; Provisional
Probab=63.60 E-value=33 Score=39.99 Aligned_cols=57 Identities=16% Similarity=0.188 Sum_probs=40.1
Q ss_pred HHHHHHHHHCCCCEEEEc-ccCCc--cCCCCce-ee-----eccchhHHHHHHHHHHcCCEEEEec
Q 003498 65 PDLIQKAKDGGLDVIQTY-VFWNG--HEPSPGK-YY-----FEGNYDLVKFIKLAKQAGLYVNLRI 121 (815)
Q Consensus 65 ~d~l~k~Ka~GlN~I~ty-vfWn~--HEp~~G~-yd-----F~G~~dL~~fl~la~~~GL~ViLR~ 121 (815)
.+.|.-+|++|+++|-.. ++-+. |--.+.. |+ |....+|.++++.|++.||+||+-.
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 466778899999999874 44321 2222221 22 3344699999999999999999985
No 100
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=63.05 E-value=47 Score=36.43 Aligned_cols=65 Identities=20% Similarity=0.280 Sum_probs=45.7
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcc--cCCccC------CCCceeeeccc--hhHHHHHHHHHHcCCEEEEecCce
Q 003498 60 SPEMWPDLIQKAKDGGLDVIQTYV--FWNGHE------PSPGKYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPY 124 (815)
Q Consensus 60 ~~e~W~d~l~k~Ka~GlN~I~tyv--fWn~HE------p~~G~ydF~G~--~dL~~fl~la~~~GL~ViLR~GPy 124 (815)
+.+.-++.++++|+.||-+=-+++ -|.... ..-+.|.|+-. -|..++++..++.|++|++.+=|+
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~ 97 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPA 97 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCC
Confidence 566678899999999986544443 343321 12356777533 489999999999999999876443
No 101
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=62.67 E-value=3.3 Score=43.81 Aligned_cols=58 Identities=17% Similarity=0.270 Sum_probs=45.7
Q ss_pred HHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCceecc
Q 003498 65 PDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCA 127 (815)
Q Consensus 65 ~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~GPyica 127 (815)
-...+.+.++|.+.|.+.++|..-.+..-.+..+ ++.++.+.|++.||.|||. +|...
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE--~~l~~ 136 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILE--PYLRG 136 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEE--ECECH
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEE--EecCc
Confidence 5678899999999999999997655544444444 8999999999999999998 44443
No 102
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=62.44 E-value=14 Score=33.07 Aligned_cols=49 Identities=24% Similarity=0.318 Sum_probs=33.3
Q ss_pred eEEecCcceEEEEEECCEEEEEEecccCCCeeEEEeeeec-cCCccEEEEEEeccCCc
Q 003498 498 VLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNM-RAGINKIALLSIAVGLP 554 (815)
Q Consensus 498 ~L~v~~~~d~~~vfVNg~~vGs~~g~~~~~~~~~~~~v~l-~~G~n~L~lLven~Gr~ 554 (815)
.|++.+....++-||||+++|+..... .+.+ .+ .+|.++|++ ++..|+.
T Consensus 35 ~l~a~~~~~~~~W~vdg~~~g~~~~~~---~~~~----~~~~~G~h~l~v-vD~~G~~ 84 (89)
T PF06832_consen 35 VLKAAGGRGPVYWFVDGEPLGTTQPGH---QLFW----QPDRPGEHTLTV-VDAQGRS 84 (89)
T ss_pred EEEEeCCCCcEEEEECCEEcccCCCCC---eEEe----CCCCCeeEEEEE-EcCCCCE
Confidence 566555556999999999998865432 2333 34 679988887 6666653
No 103
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=62.31 E-value=15 Score=39.47 Aligned_cols=52 Identities=17% Similarity=0.338 Sum_probs=43.3
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCc
Q 003498 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGP 123 (815)
Q Consensus 62 e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~GP 123 (815)
...++.++.+|+.||++||+ ..|..+++ ..+..++|+.++++||+|+--.|.
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEI---------SDGSMEIS-LEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEE---------cCCccCCC-HHHHHHHHHHHHhCCCeEeccccc
Confidence 66788889999999999998 55666655 347889999999999999988774
No 104
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=61.87 E-value=17 Score=43.47 Aligned_cols=56 Identities=20% Similarity=0.167 Sum_probs=40.7
Q ss_pred cHHHHHHHHHHCCCCEEEE-cccCCccCCCCceee----------eccchhHHHHHHHHHHcCCEEEEe
Q 003498 63 MWPDLIQKAKDGGLDVIQT-YVFWNGHEPSPGKYY----------FEGNYDLVKFIKLAKQAGLYVNLR 120 (815)
Q Consensus 63 ~W~d~l~k~Ka~GlN~I~t-yvfWn~HEp~~G~yd----------F~G~~dL~~fl~la~~~GL~ViLR 120 (815)
-+.+.|.-+|++|+|+|.. +||=+.. ....|| |....|+.++++.|++.||+|||-
T Consensus 29 gi~~~Ldyl~~LGv~~i~L~Pi~~~~~--~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD 95 (539)
T TIGR02456 29 GLTSKLDYLKWLGVDALWLLPFFQSPL--RDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIID 95 (539)
T ss_pred HHHHhHHHHHHCCCCEEEECCCcCCCC--CCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEE
Confidence 4677899999999999986 4541100 011221 445679999999999999999996
No 105
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=61.84 E-value=16 Score=43.77 Aligned_cols=55 Identities=18% Similarity=0.274 Sum_probs=40.8
Q ss_pred HHHHHHHHHHCCCCEEEE-cccCCccCCC-Ccee----------eeccchhHHHHHHHHHHcCCEEEEec
Q 003498 64 WPDLIQKAKDGGLDVIQT-YVFWNGHEPS-PGKY----------YFEGNYDLVKFIKLAKQAGLYVNLRI 121 (815)
Q Consensus 64 W~d~l~k~Ka~GlN~I~t-yvfWn~HEp~-~G~y----------dF~G~~dL~~fl~la~~~GL~ViLR~ 121 (815)
+.++|.-+|++|+++|-+ .++-. |. ..-| +|....||.++++.|+++||+|||-.
T Consensus 35 i~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 35 VTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 457888999999999987 45422 11 1122 24455799999999999999999874
No 106
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=60.02 E-value=43 Score=41.25 Aligned_cols=110 Identities=15% Similarity=0.077 Sum_probs=68.2
Q ss_pred ccHHHHHHHHHHCCCCEEE---------------EcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCceec
Q 003498 62 EMWPDLIQKAKDGGLDVIQ---------------TYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVC 126 (815)
Q Consensus 62 e~W~d~l~k~Ka~GlN~I~---------------tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~GPyic 126 (815)
+.-...|+.+|++|+|||= .|++| -|=| |+-|.= |-. ...++.+.|+.|..|..||--
T Consensus 334 ~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~-~~lp--~r~d~f---~~~-aw~l~~r~~v~v~AWmp~~~~ 406 (671)
T PRK14582 334 RNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPN-RLLP--MRADLF---NRV-AWQLRTRAGVNVYAWMPVLSF 406 (671)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCc-cccc--cccCCc---CHH-HHHHHHhhCCEEEEeccceee
Confidence 4578899999999999986 46667 4433 333311 111 344588999999999999953
Q ss_pred c---------ccCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEeccccc
Q 003498 127 A---------EWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENE 189 (815)
Q Consensus 127 a---------Ew~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENE 189 (815)
. +++..+-|...+. +-..| =.+|..++++|++.|.+-|+++ .+|=++|...+
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~r--l~P~~pe~r~~i~~i~~dla~~-------~~~dGilf~Dd 467 (671)
T PRK14582 407 DLDPTLPRVKRLDTGEGKAQIHP--EQYRR--LSPFDDRVRAQVGMLYEDLAGH-------AAFDGILFHDD 467 (671)
T ss_pred ccCCCcchhhhccccCCccccCC--CCCcC--CCCCCHHHHHHHHHHHHHHHHh-------CCCceEEeccc
Confidence 2 2222222222211 10122 2457789999999999988853 25555665554
No 107
>PRK12677 xylose isomerase; Provisional
Probab=59.99 E-value=1.3e+02 Score=34.68 Aligned_cols=89 Identities=11% Similarity=0.113 Sum_probs=53.1
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeec---cchhHHHHHHHHHHcCCEEE-EecCceeccccCCCCCCccc
Q 003498 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFE---GNYDLVKFIKLAKQAGLYVN-LRIGPYVCAEWNFGGFPVWL 138 (815)
Q Consensus 63 ~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~---G~~dL~~fl~la~~~GL~Vi-LR~GPyicaEw~~GG~P~WL 138 (815)
.+.+.++++++.|+..|+.. .+..--|+.+ -...+.++.+++++.||.|. +-+.-|.+..+..|
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh------~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g------ 99 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFH------DDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDG------ 99 (384)
T ss_pred CHHHHHHHHHHhCCCEEEec------ccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCC------
Confidence 47899999999999999883 1111112111 11358899999999999976 44321111112222
Q ss_pred ccCCCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003498 139 KYIPGINFRTENGPFKAEMHKFTKKIVDMMK 169 (815)
Q Consensus 139 ~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~ 169 (815)
.+=+.|+..++...+.+.+.++.-+
T Consensus 100 ------~lts~d~~~R~~Ai~~~~r~IdlA~ 124 (384)
T PRK12677 100 ------AFTSNDRDVRRYALRKVLRNIDLAA 124 (384)
T ss_pred ------cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2344566666665555666666555
No 108
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=59.59 E-value=39 Score=36.84 Aligned_cols=81 Identities=23% Similarity=0.391 Sum_probs=61.0
Q ss_pred eeEEEccCcEEECCeEeEEEEEE--eeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeec--cchhHHHH
Q 003498 31 GSVSYDSKAIAINGKRRILISGS--IHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFE--GNYDLVKF 106 (815)
Q Consensus 31 ~~v~~d~~~~~idG~~~~l~sG~--iHy~R~~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~--G~~dL~~f 106 (815)
..|... .+.+.|.|++++.|= +| .++.-.+.-+++|++|+.+++.|.|=+...| +.|. |...|..+
T Consensus 14 ~~~~~~--~~~~g~~~~~~iaGPCsie----~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~----~s~~G~g~~gl~~l 83 (266)
T PRK13398 14 TIVKVG--DVVIGGEEKIIIAGPCAVE----SEEQMVKVAEKLKELGVHMLRGGAFKPRTSP----YSFQGLGEEGLKIL 83 (266)
T ss_pred cEEEEC--CEEEcCCCEEEEEeCCcCC----CHHHHHHHHHHHHHcCCCEEEEeeecCCCCC----CccCCcHHHHHHHH
Confidence 345553 367777788888882 33 4677788899999999999999988754443 3555 57788899
Q ss_pred HHHHHHcCCEEEEec
Q 003498 107 IKLAKQAGLYVNLRI 121 (815)
Q Consensus 107 l~la~~~GL~ViLR~ 121 (815)
-+.+++.||.++-.|
T Consensus 84 ~~~~~~~Gl~~~te~ 98 (266)
T PRK13398 84 KEVGDKYNLPVVTEV 98 (266)
T ss_pred HHHHHHcCCCEEEee
Confidence 999999999888764
No 109
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=59.03 E-value=10 Score=32.31 Aligned_cols=39 Identities=28% Similarity=0.497 Sum_probs=27.1
Q ss_pred eEEecCcceEEEEEECCEEEEEEecccCCCeeEEEeeeeccCCccEEEE
Q 003498 498 VLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGINKIAL 546 (815)
Q Consensus 498 ~L~v~~~~d~~~vfVNg~~vGs~~g~~~~~~~~~~~~v~l~~G~n~L~l 546 (815)
.|.|.+.-.-|.|||||+++|... ..+. .|..|.++|.|
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~tp-------~~~~---~l~~G~~~v~v 41 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGTTP-------LTLK---DLPPGEHTVTV 41 (71)
T ss_pred EEEEEEECCCCEEEECCEEeccCc-------ceee---ecCCccEEEEE
Confidence 577777777899999999999432 1221 15677777665
No 110
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=58.02 E-value=15 Score=48.06 Aligned_cols=56 Identities=27% Similarity=0.393 Sum_probs=39.8
Q ss_pred HHHHHHHHCCCCEEEE-cccCCccCCC---Cce-----ee----------ec--cchhHHHHHHHHHHcCCEEEEec
Q 003498 66 DLIQKAKDGGLDVIQT-YVFWNGHEPS---PGK-----YY----------FE--GNYDLVKFIKLAKQAGLYVNLRI 121 (815)
Q Consensus 66 d~l~k~Ka~GlN~I~t-yvfWn~HEp~---~G~-----yd----------F~--G~~dL~~fl~la~~~GL~ViLR~ 121 (815)
+.|.-+|++|+|+|+. +||=...|.. .|. |+ |. +..++.++++.|+++||.|||-.
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 4577899999999996 5653322221 110 22 23 56789999999999999999984
No 111
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=57.94 E-value=33 Score=28.61 Aligned_cols=55 Identities=18% Similarity=0.143 Sum_probs=43.4
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEE
Q 003498 61 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNL 119 (815)
Q Consensus 61 ~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViL 119 (815)
|..-.+.++-+.+.|+|...+|++= ++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIAD--TSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 5566788999999999999999833 333 58877765 5778999999999988764
No 112
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=57.43 E-value=1.2e+02 Score=32.56 Aligned_cols=65 Identities=12% Similarity=0.199 Sum_probs=48.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCCCCcee--eecc--chhHHHHHHHHHHcCCEEEEecCcee
Q 003498 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKY--YFEG--NYDLVKFIKLAKQAGLYVNLRIGPYV 125 (815)
Q Consensus 60 ~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~y--dF~G--~~dL~~fl~la~~~GL~ViLR~GPyi 125 (815)
..+...+.++.+++.||-.=...+-+...+ ..+.| +|.- --|..++|+..++.|++|+|.+=|+|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~-~~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTD-GYGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECccccc-CCceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 566788899999999887544444444333 24556 5432 24899999999999999999998888
No 113
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=56.48 E-value=54 Score=40.56 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=37.0
Q ss_pred HHHHHHHCCCCEEEE-cccCCccC---CCCc-----eee----------e---ccchhHHHHHHHHHHcCCEEEEec
Q 003498 67 LIQKAKDGGLDVIQT-YVFWNGHE---PSPG-----KYY----------F---EGNYDLVKFIKLAKQAGLYVNLRI 121 (815)
Q Consensus 67 ~l~k~Ka~GlN~I~t-yvfWn~HE---p~~G-----~yd----------F---~G~~dL~~fl~la~~~GL~ViLR~ 121 (815)
.|.-+|++|+|+|+. +||=...+ ...| -|+ | ....+|.++|+.|+++||.|||-.
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 367899999999996 55521111 1111 111 1 124689999999999999999984
No 114
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=56.23 E-value=90 Score=33.26 Aligned_cols=90 Identities=18% Similarity=0.164 Sum_probs=58.2
Q ss_pred HHHHHHHHHCCCCEEEEcccCCccCCCCcee-eeccchhHHHHHHHHHHcCCEEEEecCceeccccCCCCCCcccccCCC
Q 003498 65 PDLIQKAKDGGLDVIQTYVFWNGHEPSPGKY-YFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPG 143 (815)
Q Consensus 65 ~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~y-dF~G~~dL~~fl~la~~~GL~ViLR~GPyicaEw~~GG~P~WL~~~p~ 143 (815)
.+.|+++.+.|++.|+.. ..+|..-.- +++ ..++.++.++++++||.+.+- +||.
T Consensus 13 ~~~~~~~~~~G~~~vel~----~~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~h-~p~~------------------ 68 (273)
T smart00518 13 YKAFIEAVDIGARSFQLF----LGNPRSWKGVRLS-EETAEKFKEALKENNIDVSVH-APYL------------------ 68 (273)
T ss_pred hHHHHHHHHcCCCEEEEE----CCCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEEE-CCce------------------
Confidence 478999999999999983 333322110 122 236888999999999986542 3331
Q ss_pred eeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEe
Q 003498 144 INFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILS 184 (815)
Q Consensus 144 i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~ 184 (815)
+.+.+.|+..+++..+++++.++..+ .+ |.++|.+
T Consensus 69 ~nl~s~d~~~r~~~~~~l~~~i~~A~--~l----Ga~~vv~ 103 (273)
T smart00518 69 INLASPDKEKVEKSIERLIDEIKRCE--EL----GIKALVF 103 (273)
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEE
Confidence 12345577777777777777777766 33 5566554
No 115
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=54.79 E-value=24 Score=41.84 Aligned_cols=112 Identities=13% Similarity=0.088 Sum_probs=81.4
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCccCCC---CceeeeccchhHHHHHHHHHHcCCEEEEecCceeccccCCCCCCcccc
Q 003498 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPS---PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLK 139 (815)
Q Consensus 63 ~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~---~G~ydF~G~~dL~~fl~la~~~GL~ViLR~GPyicaEw~~GG~P~WL~ 139 (815)
.+.++++.||++|++.-+.-|-|...=|. .+.-+-+|..-...+|+...++||..++-. -+=.+|.||.
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL--------fHwDlPq~Le 163 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL--------FHWDLPQALE 163 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE--------ecCCCCHHHH
Confidence 48899999999999999999999987774 356888898888999999999999965442 1335799987
Q ss_pred c-CCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEe
Q 003498 140 Y-IPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILS 184 (815)
Q Consensus 140 ~-~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~ 184 (815)
+ ..|-.-+..=+.|+++.+--|++..+++| .+.-=|...|+.+
T Consensus 164 DeYgGwLn~~ivedF~~yA~~CF~~fGDrVK--~WiT~NEP~v~s~ 207 (524)
T KOG0626|consen 164 DEYGGWLNPEIVEDFRDYADLCFQEFGDRVK--HWITFNEPNVFSI 207 (524)
T ss_pred HHhccccCHHHHHHHHHHHHHHHHHhcccce--eeEEecccceeee
Confidence 6 44432222234577777777888888887 4433344444443
No 116
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=54.67 E-value=38 Score=29.15 Aligned_cols=37 Identities=16% Similarity=0.298 Sum_probs=26.8
Q ss_pred eEEec---CcceEEEEEECCEEEEEEecccCC--CeeEEEee
Q 003498 498 VLTVM---SAGHALHVFVNGQLAGTAYGSLEF--PKLTFTEG 534 (815)
Q Consensus 498 ~L~v~---~~~d~~~vfVNg~~vGs~~g~~~~--~~~~~~~~ 534 (815)
.|+|. ...|.|.||++++++|+.++..+. .++.|+..
T Consensus 17 ~i~v~~rpk~~dsaEV~~g~EfiGvi~~DedeGe~Sy~f~M~ 58 (63)
T PF11324_consen 17 GITVKARPKKDDSAEVYIGDEFIGVIYRDEDEGEVSYNFQMA 58 (63)
T ss_pred ceEEEcCCCCCCceEEEeCCEEEEEEEeecCCCcEEEEEEEE
Confidence 45543 468999999999999999986543 44555543
No 117
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=52.96 E-value=58 Score=32.44 Aligned_cols=104 Identities=18% Similarity=0.199 Sum_probs=62.7
Q ss_pred ccHHHHHHHHHHCCCCEEEEcc--cCCccCC----CCceeeeccchhHHHHHHHHHHcCCEEE-EecCceeccccCCCCC
Q 003498 62 EMWPDLIQKAKDGGLDVIQTYV--FWNGHEP----SPGKYYFEGNYDLVKFIKLAKQAGLYVN-LRIGPYVCAEWNFGGF 134 (815)
Q Consensus 62 e~W~d~l~k~Ka~GlN~I~tyv--fWn~HEp----~~G~ydF~G~~dL~~fl~la~~~GL~Vi-LR~GPyicaEw~~GG~ 134 (815)
+.-++..+.+++.|+..+.... .|..... .+.+ .-.....+.+.+++|++.|...+ +.+|.
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~----------- 94 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHSGR----------- 94 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECTT-----------
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecCcc-----------
Confidence 3456778889999999666544 4443211 1111 22234589999999999999855 55542
Q ss_pred CcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEecccccccCc
Q 003498 135 PVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPM 193 (815)
Q Consensus 135 P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~ 193 (815)
|-.. + ....+.-.+.+.+.+++|+++.+++ | |.+-|||..+..
T Consensus 95 --~~~~-~----~~~~~~~~~~~~~~l~~l~~~a~~~------g---v~i~lE~~~~~~ 137 (213)
T PF01261_consen 95 --YPSG-P----EDDTEENWERLAENLRELAEIAEEY------G---VRIALENHPGPF 137 (213)
T ss_dssp --ESSS-T----TSSHHHHHHHHHHHHHHHHHHHHHH------T---SEEEEE-SSSSS
T ss_pred --cccc-c----CCCHHHHHHHHHHHHHHHHhhhhhh------c---ceEEEecccCcc
Confidence 0000 0 1122345666777888888888844 2 446789988764
No 118
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=52.29 E-value=30 Score=43.46 Aligned_cols=64 Identities=17% Similarity=0.106 Sum_probs=45.5
Q ss_pred CcccHHHHHHHHHHCCCCEEEE-cccCCc----cCCCC-----ceeeeccchhHHHHHHHHHHcCCEEEEecCc
Q 003498 60 SPEMWPDLIQKAKDGGLDVIQT-YVFWNG----HEPSP-----GKYYFEGNYDLVKFIKLAKQAGLYVNLRIGP 123 (815)
Q Consensus 60 ~~e~W~d~l~k~Ka~GlN~I~t-yvfWn~----HEp~~-----G~ydF~G~~dL~~fl~la~~~GL~ViLR~GP 123 (815)
+-+.|.+.|.-++++|+++|.. ++|=+. |--.. =.-.|.+..|+.+|++.|+++||.|||-+=|
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4456889999999999999976 443111 11000 0112557889999999999999999998544
No 119
>PLN02361 alpha-amylase
Probab=50.07 E-value=36 Score=39.36 Aligned_cols=57 Identities=12% Similarity=0.065 Sum_probs=39.3
Q ss_pred HHHHHHHHHCCCCEEEEcccCCc---cCCCCce-ee----eccchhHHHHHHHHHHcCCEEEEec
Q 003498 65 PDLIQKAKDGGLDVIQTYVFWNG---HEPSPGK-YY----FEGNYDLVKFIKLAKQAGLYVNLRI 121 (815)
Q Consensus 65 ~d~l~k~Ka~GlN~I~tyvfWn~---HEp~~G~-yd----F~G~~dL~~fl~la~~~GL~ViLR~ 121 (815)
.+.|.-++++|+++|-+.=+... |--.+.. |+ |....+|.++|+.|++.||+||+-.
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 44567789999999987533221 2112222 22 4455799999999999999999874
No 120
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=49.78 E-value=56 Score=35.85 Aligned_cols=109 Identities=15% Similarity=0.199 Sum_probs=67.9
Q ss_pred EEEEEEeeCCCCC---cccH-HHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCc
Q 003498 48 ILISGSIHYPRSS---PEMW-PDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGP 123 (815)
Q Consensus 48 ~l~sG~iHy~R~~---~e~W-~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~GP 123 (815)
+-+++..|+..-| .... -++|++-.++|.+.+-|=.| ||.+ .+.+|++.|++.|+.+=+-||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~~----------Fd~~---~~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQLF----------YDVD---NFLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccce----------ecHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 4577777765532 2222 12444333699999999444 3333 6889999999997775555555
Q ss_pred eec---------cccCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHh
Q 003498 124 YVC---------AEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKA 170 (815)
Q Consensus 124 yic---------aEw~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~ 170 (815)
..+ +||..--+|.|+.+.=. ....+++..++.--.+..++++.+++
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~-~~~~~~~~~~~~gi~~a~~~~~~l~~ 251 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMSRLE-PIKDDDEAVRDYGIELIVEMCQKLLA 251 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 544 57776778999976200 01233455566666777777777773
No 121
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=49.43 E-value=54 Score=37.70 Aligned_cols=53 Identities=19% Similarity=0.244 Sum_probs=41.6
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 003498 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (815)
Q Consensus 60 ~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~ 121 (815)
+.+.|+++|+.+|++||+....=+- ....+.. ..|...++.|++.|++++|-+
T Consensus 15 t~~dw~~di~~A~~~GIDgFaLNig------~~d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFALNIG------SSDSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecc------cCCcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 7889999999999999999887443 1222222 368888999999999999875
No 122
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=48.08 E-value=37 Score=37.66 Aligned_cols=59 Identities=27% Similarity=0.328 Sum_probs=41.3
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCc---cCCCCcee--------eeccchhHHHHHHHHHHcCCEEEEec
Q 003498 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNG---HEPSPGKY--------YFEGNYDLVKFIKLAKQAGLYVNLRI 121 (815)
Q Consensus 60 ~~e~W~d~l~k~Ka~GlN~I~tyvfWn~---HEp~~G~y--------dF~G~~dL~~fl~la~~~GL~ViLR~ 121 (815)
.+..-.++++.+|..|+|++-.-+==.. .-|....+ .|- |+..||+.|+|.|||+|.|+
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f~---Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKFK---DIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhcccccc---ccHHHHHHHHhcCeEEEEEE
Confidence 4556788999999999998865332111 11222111 233 99999999999999999996
No 123
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=47.71 E-value=41 Score=42.55 Aligned_cols=63 Identities=19% Similarity=0.242 Sum_probs=46.4
Q ss_pred CcccHHHHHHHHHHCCCCEEEE-cccCCccCCCCc---ee---e-------eccchhHHHHHHHHHHcCCEEEEecCcee
Q 003498 60 SPEMWPDLIQKAKDGGLDVIQT-YVFWNGHEPSPG---KY---Y-------FEGNYDLVKFIKLAKQAGLYVNLRIGPYV 125 (815)
Q Consensus 60 ~~e~W~d~l~k~Ka~GlN~I~t-yvfWn~HEp~~G---~y---d-------F~G~~dL~~fl~la~~~GL~ViLR~GPyi 125 (815)
+-+.+.+.|.-++++|+|+|-. .++= ..+| -| | |.+..++.+|++.|+++||.|||-+=|-=
T Consensus 18 tf~~~~~~l~YL~~LGis~IyLsPi~~----a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH 93 (879)
T PRK14511 18 TFDDAAELVPYFADLGVSHLYLSPILA----ARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNH 93 (879)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECcCcc----CCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 4456899999999999999986 3431 1122 11 2 44678999999999999999999865543
Q ss_pred c
Q 003498 126 C 126 (815)
Q Consensus 126 c 126 (815)
+
T Consensus 94 ~ 94 (879)
T PRK14511 94 M 94 (879)
T ss_pred c
Confidence 3
No 124
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=47.32 E-value=31 Score=38.32 Aligned_cols=66 Identities=14% Similarity=0.185 Sum_probs=47.4
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCCCCc--eeeeccch--hHHHHHHHHHHcCCEEEEecCceec
Q 003498 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPG--KYYFEGNY--DLVKFIKLAKQAGLYVNLRIGPYVC 126 (815)
Q Consensus 60 ~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G--~ydF~G~~--dL~~fl~la~~~GL~ViLR~GPyic 126 (815)
+.+.-.+.++++++.||-.=.+.+-|.... ..+ .|+|+-.+ |..++|+..++.|++|++.+=|+|.
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~ 91 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFG 91 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcC
Confidence 556678899999999876544444443332 234 77776433 8999999999999999998767663
No 125
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=47.27 E-value=37 Score=45.83 Aligned_cols=60 Identities=20% Similarity=0.264 Sum_probs=46.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEc-ccCCccCCCCc---ee----------eeccchhHHHHHHHHHHcCCEEEEecCc
Q 003498 60 SPEMWPDLIQKAKDGGLDVIQTY-VFWNGHEPSPG---KY----------YFEGNYDLVKFIKLAKQAGLYVNLRIGP 123 (815)
Q Consensus 60 ~~e~W~d~l~k~Ka~GlN~I~ty-vfWn~HEp~~G---~y----------dF~G~~dL~~fl~la~~~GL~ViLR~GP 123 (815)
+-+.|.+.|.-+|++|+|+|-.- +| +..+| -| .|.+..|+.+|++.|+++||.|||-+=|
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~----~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPIL----KARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCc----CCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 55679999999999999999863 43 22222 12 2557789999999999999999998644
No 126
>PRK03705 glycogen debranching enzyme; Provisional
Probab=47.26 E-value=30 Score=42.55 Aligned_cols=55 Identities=24% Similarity=0.316 Sum_probs=37.1
Q ss_pred HHHHHHHCCCCEEEE-cccCCccCCCC---c-----eee----------ecc-----chhHHHHHHHHHHcCCEEEEec
Q 003498 67 LIQKAKDGGLDVIQT-YVFWNGHEPSP---G-----KYY----------FEG-----NYDLVKFIKLAKQAGLYVNLRI 121 (815)
Q Consensus 67 ~l~k~Ka~GlN~I~t-yvfWn~HEp~~---G-----~yd----------F~G-----~~dL~~fl~la~~~GL~ViLR~ 121 (815)
.|.-+|++|+|+|+. +|+=...++.. | -|| |.. ..++.++++.|+++||.|||-.
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 478999999999996 45422222110 1 011 222 1479999999999999999984
No 127
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=47.05 E-value=25 Score=38.27 Aligned_cols=52 Identities=33% Similarity=0.323 Sum_probs=40.1
Q ss_pred CCCCceEEEEEEecCCCCcccccCCCcceEEecCcceEEEEEECCEEEEEEec
Q 003498 470 RDATDYLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYG 522 (815)
Q Consensus 470 ~d~sgYlwY~T~v~~~~~~~~~~~g~~~~L~v~~~~d~~~vfVNg~~vGs~~g 522 (815)
+|..|..||+-++.+..+. +...+....|++.+++-.|.|+|||.-+=...+
T Consensus 84 rdfv~~~wyer~v~vpe~w-~~~~~~r~vlr~~s~H~~Aivwvng~~~~~h~g 135 (297)
T KOG2024|consen 84 RDFVGLVWYERTVTVPESW-TQDLGKRVVLRIGSAHSYAIVWVNGVDALEHEG 135 (297)
T ss_pred ccceeeeEEEEEEEcchhh-hhhcCCeEEEEeecccceeEEEEcceeeccccc
Confidence 5788999999999887554 222345578999999999999999986655443
No 128
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=47.01 E-value=39 Score=38.07 Aligned_cols=72 Identities=26% Similarity=0.301 Sum_probs=55.9
Q ss_pred EEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCce-eeeccchhHHHHHHHHHHcCCEEEEecCceeccc
Q 003498 50 ISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGK-YYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAE 128 (815)
Q Consensus 50 ~sG~iHy~R~~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~-ydF~G~~dL~~fl~la~~~GL~ViLR~GPyicaE 128 (815)
++=|+.+.|.+.+.=...|++|...|+.-|=| ++|.|.+.. --|. -+.+.++.|.+.||+||+.+-|-|--|
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFt----sl~~~~~~~~~~~~---~~~ell~~Anklg~~vivDvnPsil~~ 76 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFT----SLLIPEEDAELYFH---RFKELLKEANKLGLRVIVDVNPSILKE 76 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccceee----ecccCCchHHHHHH---HHHHHHHHHHhcCcEEEEEcCHHHHhh
Confidence 45567777888888888999999999966544 778887652 1222 678899999999999999988876655
No 129
>PLN03059 beta-galactosidase; Provisional
Probab=45.95 E-value=62 Score=40.73 Aligned_cols=43 Identities=26% Similarity=0.380 Sum_probs=32.0
Q ss_pred CCCceEEEEEEECCCCCCc------eEEecCCCc-eEEEEECCeeccccc
Q 003498 621 RQPLTWYRTTFSAPAGNAP------LALDMGSMG-KGQVWVNGQSIGRHW 663 (815)
Q Consensus 621 ~~~~twYkttF~~p~g~dp------v~Ldl~g~g-KG~~wVNG~niGRYW 663 (815)
.....||+|+|+.+....+ ..|.+.+.+ .-+|||||+-+|.-.
T Consensus 468 ~~dYlwY~t~i~~~~~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~ 517 (840)
T PLN03059 468 ATDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVY 517 (840)
T ss_pred CCceEEEEEEEeecCCccccccCCCceEEEcccCcEEEEEECCEEEEEEE
Confidence 3478999999998654321 237777665 589999999999765
No 130
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=45.84 E-value=52 Score=36.13 Aligned_cols=115 Identities=19% Similarity=0.276 Sum_probs=68.7
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeec---cchhHHHHHHHHHHcCCEEEEecCceeccccCCCCC--
Q 003498 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFE---GNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGF-- 134 (815)
Q Consensus 60 ~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~---G~~dL~~fl~la~~~GL~ViLR~GPyicaEw~~GG~-- 134 (815)
+-+.-+.-+.-+.++|+.-|-+=.-|...+ ....+||+ ...||.+.++-|++.|..|+|+. + |..||-
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~-~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~----~--~~~~~~~~ 102 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLVDAGWYGWE-KDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWY----H--SETGGNVA 102 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEBTTCCGS---TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEE----E--CCHTTBHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccccccc-ccccccccccCCccCHHHHHHHHHHcCCCEEEEE----e--CCcchhhH
Confidence 556778899999999999999988898722 23466765 34799999999999999988872 2 222221
Q ss_pred C------ccc---cc--CCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceE
Q 003498 135 P------VWL---KY--IPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPII 182 (815)
Q Consensus 135 P------~WL---~~--~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII 182 (815)
+ .+| .+ +.||++=--+. --+.+-+|+.+|++.-++++|+..=.|++.
T Consensus 103 ~~~~~~~~~f~~~~~~Gv~GvKidF~~~-d~Q~~v~~y~~i~~~AA~~~LmvnfHg~~k 160 (273)
T PF10566_consen 103 NLEKQLDEAFKLYAKWGVKGVKIDFMDR-DDQEMVNWYEDILEDAAEYKLMVNFHGATK 160 (273)
T ss_dssp HHHCCHHHHHHHHHHCTEEEEEEE--SS-TSHHHHHHHHHHHHHHHHTT-EEEETTS--
T ss_pred hHHHHHHHHHHHHHHcCCCEEeeCcCCC-CCHHHHHHHHHHHHHHHHcCcEEEecCCcC
Confidence 1 111 11 22332210000 125567899999999999988766666544
No 131
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=45.39 E-value=35 Score=38.21 Aligned_cols=73 Identities=10% Similarity=0.012 Sum_probs=51.5
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccc--hhHHHHHHHHHHcCCEEEEecCceecc
Q 003498 54 IHYPRS---SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPYVCA 127 (815)
Q Consensus 54 iHy~R~---~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~--~dL~~fl~la~~~GL~ViLR~GPyica 127 (815)
+|..|. +.+.-.+.++++++.||.+=...+-+.. ....+.|+|.-. -|..++++..++.|++|++..=|+|+.
T Consensus 13 ~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~ 90 (339)
T cd06603 13 YHQCRWNYKDQEDVKEVDAGFDEHDIPYDVIWLDIEH-TDGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKR 90 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCceEEEEChHH-hCCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceec
Confidence 344453 4566788999999999865444333221 234566777643 289999999999999999998888874
No 132
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=43.45 E-value=43 Score=36.26 Aligned_cols=50 Identities=26% Similarity=0.223 Sum_probs=37.8
Q ss_pred HHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 003498 67 LIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (815)
Q Consensus 67 ~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~G 122 (815)
..+++|++|++.|-+ .|..++-.|.-+ +..+.+=++.|.++||.+|+++|
T Consensus 78 S~~mLkd~G~~~vii-----GHSERR~~f~Et-d~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 78 SAEMLKDLGVKYVII-----GHSERRQYFGET-DELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred CHHHHHHCCCCEEEe-----CcccccCccCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 345799999999988 787777776644 33444445559999999999988
No 133
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=43.43 E-value=39 Score=38.02 Aligned_cols=73 Identities=11% Similarity=0.152 Sum_probs=52.6
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccc--hhH--HHHHHHHHHcCCEEEEecCceec
Q 003498 54 IHYPRS---SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGN--YDL--VKFIKLAKQAGLYVNLRIGPYVC 126 (815)
Q Consensus 54 iHy~R~---~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~--~dL--~~fl~la~~~GL~ViLR~GPyic 126 (815)
+|..|. +.+..++.++++++.||..=...+-+..++ ..+.|.|... -|. .++++..++.|++|+|.+=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMD-RRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECccccc-CccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 455554 566788999999999987544433333332 2467776653 377 99999999999999999888886
Q ss_pred c
Q 003498 127 A 127 (815)
Q Consensus 127 a 127 (815)
-
T Consensus 92 ~ 92 (339)
T cd06602 92 A 92 (339)
T ss_pred c
Confidence 4
No 134
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=43.28 E-value=98 Score=32.99 Aligned_cols=91 Identities=11% Similarity=0.090 Sum_probs=54.6
Q ss_pred Cceeeec-cchhHHHHHHHHHHcCCEEEEecCceeccccCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHh
Q 003498 92 PGKYYFE-GNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKA 170 (815)
Q Consensus 92 ~G~ydF~-G~~dL~~fl~la~~~GL~ViLR~GPyicaEw~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~ 170 (815)
.|...+. +..++..+++.|++.|++|++.+|= |..+.+- .+ ..|+ +.-++|.+.|++.+++
T Consensus 36 ~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sigg-----~~~~~~~-~~---------~~~~---~~r~~fi~~lv~~~~~ 97 (253)
T cd06545 36 NGTLNANPVRSELNSVVNAAHAHNVKILISLAG-----GSPPEFT-AA---------LNDP---AKRKALVDKIINYVVS 97 (253)
T ss_pred CCeEEecCcHHHHHHHHHHHHhCCCEEEEEEcC-----CCCCcch-hh---------hcCH---HHHHHHHHHHHHHHHH
Confidence 4666664 3457889999999999999999871 2221110 01 1123 2346789999999996
Q ss_pred ccccccCCCceEEecccccccCcccccCCCCHHHHHHHHHHHHh
Q 003498 171 ERLFESQGGPIILSQIENEYGPMEYEIGAPGRSYTRWAAKMAVG 214 (815)
Q Consensus 171 ~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~ 214 (815)
+++ + ++.|+=|+... ....|...++++-..
T Consensus 98 ~~~---D-----GIdiDwE~~~~------~~~~~~~fv~~Lr~~ 127 (253)
T cd06545 98 YNL---D-----GIDVDLEGPDV------TFGDYLVFIRALYAA 127 (253)
T ss_pred hCC---C-----ceeEEeeccCc------cHhHHHHHHHHHHHH
Confidence 654 2 35566676532 134555555554433
No 135
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=43.25 E-value=42 Score=37.26 Aligned_cols=67 Identities=15% Similarity=0.250 Sum_probs=47.5
Q ss_pred CcccHHHHHHHHHHCCCCEEEE--cccCCccCC---CCceeeeccc--hhHHHHHHHHHHcCCEEEEecCceec
Q 003498 60 SPEMWPDLIQKAKDGGLDVIQT--YVFWNGHEP---SPGKYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPYVC 126 (815)
Q Consensus 60 ~~e~W~d~l~k~Ka~GlN~I~t--yvfWn~HEp---~~G~ydF~G~--~dL~~fl~la~~~GL~ViLR~GPyic 126 (815)
..+...+.++++|+.||-+=.+ =..|---.. .-|.|+|.-. -|..++|+..++.|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 4566789999999999864443 334532211 2346666533 38999999999999999998777764
No 136
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=42.77 E-value=28 Score=35.21 Aligned_cols=22 Identities=27% Similarity=0.661 Sum_probs=19.1
Q ss_pred EEecCCCceEEEEECCeecccc
Q 003498 641 ALDMGSMGKGQVWVNGQSIGRH 662 (815)
Q Consensus 641 ~Ldl~g~gKG~~wVNG~niGRY 662 (815)
.|..++.|+=.+||||+.+|+-
T Consensus 7 ~l~isa~g~Y~l~vNG~~V~~~ 28 (172)
T PF08531_consen 7 RLYISALGRYELYVNGERVGDG 28 (172)
T ss_dssp EEEEEEESEEEEEETTEEEEEE
T ss_pred EEEEEeCeeEEEEECCEEeeCC
Confidence 4777888999999999999974
No 137
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=41.75 E-value=52 Score=35.42 Aligned_cols=49 Identities=29% Similarity=0.331 Sum_probs=40.4
Q ss_pred HHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 003498 68 IQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (815)
Q Consensus 68 l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~G 122 (815)
..++|++|++.|-+ .|..++--|.-+ +.++.+=++.|.++||.+|+++|
T Consensus 77 ~~mL~d~G~~~vii-----GHSERR~~f~Et-~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 77 AEMLKDAGAKYVII-----GHSERRQYFGET-DEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred HHHHHHcCCCEEEe-----CcccccCcCCCC-cHHHHHHHHHHHHCCCEEEEEeC
Confidence 45799999998888 677666666544 67888999999999999999987
No 138
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=41.36 E-value=44 Score=43.46 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHcCCEEEEec
Q 003498 101 YDLVKFIKLAKQAGLYVNLRI 121 (815)
Q Consensus 101 ~dL~~fl~la~~~GL~ViLR~ 121 (815)
.+|.++|+.|+++||.|||-.
T Consensus 555 ~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 689999999999999999984
No 139
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=40.48 E-value=5.8e+02 Score=28.73 Aligned_cols=231 Identities=13% Similarity=0.142 Sum_probs=103.2
Q ss_pred HHHHHHHHCCCCEEEE-------cccCCccCCCCceeeeccchhH-HHHHHHHHHcCCEEEEecCceeccccCCCCCCcc
Q 003498 66 DLIQKAKDGGLDVIQT-------YVFWNGHEPSPGKYYFEGNYDL-VKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVW 137 (815)
Q Consensus 66 d~l~k~Ka~GlN~I~t-------yvfWn~HEp~~G~ydF~G~~dL-~~fl~la~~~GL~ViLR~GPyicaEw~~GG~P~W 137 (815)
+-++.+|++|..-|=. +-.|.-.-..-..-+-...+|| .+|.+.|+++||++-|=..| ++|.+...+.-
T Consensus 95 qW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~---~dw~~~~~~~~ 171 (346)
T PF01120_consen 95 QWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSP---WDWHHPDYPPD 171 (346)
T ss_dssp HHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEES---SSCCCTTTTSS
T ss_pred HHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecc---hHhcCcccCCC
Confidence 3577899999985431 2235543222122122233455 58999999999988773222 36765444333
Q ss_pred cccC-CCeeeecCChhhHHHHH-HHHHHHHHHHHhccc--cccCCCceEEecccccccCcccccCCCCHHHHHHHHHHHH
Q 003498 138 LKYI-PGINFRTENGPFKAEMH-KFTKKIVDMMKAERL--FESQGGPIILSQIENEYGPMEYEIGAPGRSYTRWAAKMAV 213 (815)
Q Consensus 138 L~~~-p~i~~Rt~d~~y~~~~~-~~~~~i~~~l~~~~l--~~~~gGpII~~QIENEyg~~~~~~~~~~~~Y~~~l~~~~~ 213 (815)
.... +. .....+.+.+.++ .++.+|-+.+.++++ ++-+|+. .. ....--...+.++++
T Consensus 172 ~~~~~~~--~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~--------~~--------~~~~~~~~~~~~~i~ 233 (346)
T PF01120_consen 172 EEGDENG--PADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGW--------PD--------PDEDWDSAELYNWIR 233 (346)
T ss_dssp CHCHHCC----HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTT--------SC--------CCTHHHHHHHHHHHH
T ss_pred ccCCccc--ccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCC--------Cc--------cccccCHHHHHHHHH
Confidence 2211 11 0112333444444 344444444443321 1122211 00 112222366677777
Q ss_pred hcCCCcceeecCCCCCCCccccCCCCccc-ccCCCCC-CCCCceeeecccccccccCC---CCCCCChHHHHHHHHHHHH
Q 003498 214 GLGTGVPWIMCKQDDAPDPLINTCNGFYC-DYFSPNK-AYKPKMWTEAWTGWYTEFGG---PVPHRPVEDLAFSVAKFIQ 288 (815)
Q Consensus 214 ~~g~~vP~~~~~~~~~p~~vi~t~ng~~~-~~f~~~~-p~~P~~~tE~~~GWf~~wG~---~~~~r~~ed~a~~v~~~~~ 288 (815)
+..-++-+.-.......... .+.. +...+.. ...|. |-=..--..||- ....++++++...+.+..+
T Consensus 234 ~~qp~~ii~~r~~~~~~~~~-----d~~~~E~~~~~~~~~~pw---E~~~ti~~~W~y~~~~~~~ks~~~li~~l~~~vs 305 (346)
T PF01120_consen 234 KLQPDVIINNRWGGNEQGDG-----DYNTPERGIPGEIQGRPW---ETCTTIGPSWGYNTPDEKYKSADELIDILVDSVS 305 (346)
T ss_dssp HHSTTSEEECCCSSCSSCCB-----SCCEECTTBTTTEEESEE---EEEEESSSSSS-CGGGCGS--HHHHHHHHHHHHT
T ss_pred HhCCeEEEecccCCCCCccc-----cccchhccCCCCCCCCCc---cccCcCCCCCcccCCCCCcCCHHHHHHHHHHHhc
Confidence 76655422211111000000 1111 1111111 11121 211111234443 2344688889888888899
Q ss_pred hCCee-eeeeeeecCCCCCCCCCCCcccccCCCCCCCCcCCCCCchhHHHHHHHHHHHHhhcCC
Q 003498 289 KGGSF-INYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEPA 351 (815)
Q Consensus 289 ~g~s~-~nyYM~hGGTNFG~~~G~~~~~TSYDYdAPl~E~G~~~~pKy~~lr~l~~~i~~~~~~ 351 (815)
+||++ +|. +.+.+|.+.++--..||++.+.|+....+
T Consensus 306 ~ngnlLLNi--------------------------gP~~dG~ip~~~~~~L~e~G~Wl~~ngea 343 (346)
T PF01120_consen 306 RNGNLLLNI--------------------------GPDPDGTIPEEQVERLREIGDWLKVNGEA 343 (346)
T ss_dssp BTEEEEEEE-----------------------------TTSS--HHHHHHHHHHHHHHHHHGGG
T ss_pred cCceEEEec--------------------------CCCCCCCcCHHHHHHHHHHHHHHHhcccc
Confidence 99884 443 34567887777888999999998875543
No 140
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=39.98 E-value=57 Score=29.14 Aligned_cols=47 Identities=15% Similarity=0.185 Sum_probs=25.2
Q ss_pred CCCceEEeccccc-ccCccccc----CC-CCHHHHHHHHHHH---HhcCCCcceee
Q 003498 177 QGGPIILSQIENE-YGPMEYEI----GA-PGRSYTRWAAKMA---VGLGTGVPWIM 223 (815)
Q Consensus 177 ~gGpII~~QIENE-yg~~~~~~----~~-~~~~Y~~~l~~~~---~~~g~~vP~~~ 223 (815)
+...|.+|+|=|| -++....+ +. ....|.+||++++ |+.+-..|+..
T Consensus 7 ~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~ 62 (88)
T PF12876_consen 7 YDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTS 62 (88)
T ss_dssp -GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE-
T ss_pred CCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEe
Confidence 3458999999999 55322111 11 2456666666664 55677777654
No 141
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=38.78 E-value=63 Score=33.10 Aligned_cols=89 Identities=20% Similarity=0.327 Sum_probs=55.7
Q ss_pred EEEEeeCCCCC-----cccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeee--cc-chhHHHHHHHHHHcCCEEEEec
Q 003498 50 ISGSIHYPRSS-----PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYF--EG-NYDLVKFIKLAKQAGLYVNLRI 121 (815)
Q Consensus 50 ~sG~iHy~R~~-----~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF--~G-~~dL~~fl~la~~~GL~ViLR~ 121 (815)
.-|.+||+|.. .++.+.-++.++..+++- ...|--.|..++.+.- +- ...+.+|+++++++|.++++-.
T Consensus 54 ~~G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~---~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt 130 (196)
T cd06416 54 STDVYFFPCINCCGSAAGQVQTFLQYLKANGIKY---GTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYS 130 (196)
T ss_pred ccceEEEecCCCCCCHHHHHHHHHHHHHhCCCce---eEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEc
Confidence 34999998753 456777888888765432 1123334433343321 11 1467899999999999999988
Q ss_pred Cceec----ccc---CCCCCCcccccC
Q 003498 122 GPYVC----AEW---NFGGFPVWLKYI 141 (815)
Q Consensus 122 GPyic----aEw---~~GG~P~WL~~~ 141 (815)
+++-- +-. ++..+|.|+...
T Consensus 131 ~~~~w~~~~~~~~~~~~~~ypLWiA~Y 157 (196)
T cd06416 131 SQYDWSQIFGSSYTCNFSSLPLWYAHY 157 (196)
T ss_pred CcchhccccCCCcCCCcCCCceEecCC
Confidence 87521 111 145789999874
No 142
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=37.27 E-value=1.2e+02 Score=35.37 Aligned_cols=97 Identities=20% Similarity=0.312 Sum_probs=60.8
Q ss_pred eCCCC--CcccHHHHHHHHHHCCCCEEEE-cccCCccC--C--CCceeeec-----cc-----hhHHHHHHHHH-HcCCE
Q 003498 55 HYPRS--SPEMWPDLIQKAKDGGLDVIQT-YVFWNGHE--P--SPGKYYFE-----GN-----YDLVKFIKLAK-QAGLY 116 (815)
Q Consensus 55 Hy~R~--~~e~W~d~l~k~Ka~GlN~I~t-yvfWn~HE--p--~~G~ydF~-----G~-----~dL~~fl~la~-~~GL~ 116 (815)
+.++. +-+.|++.|+.++++|.|+|.. ++---... | ...|..|+ .. .++.++|+.++ +.||.
T Consensus 13 vlsk~~G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll 92 (423)
T PF14701_consen 13 VLSKWMGPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLL 92 (423)
T ss_pred EhhhhcCCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCce
Confidence 44443 4568999999999999999984 22111110 0 11222221 11 49999999985 68999
Q ss_pred EEEecCceeccccCCCCC-CcccccCCCeeeecCChhhHHHH
Q 003498 117 VNLRIGPYVCAEWNFGGF-PVWLKYIPGINFRTENGPFKAEM 157 (815)
Q Consensus 117 ViLR~GPyicaEw~~GG~-P~WL~~~p~i~~Rt~d~~y~~~~ 157 (815)
++.-+ =||+-.. =.||.+.|+.-.=-.+.|+++..
T Consensus 93 ~~~Dv------V~NHtA~nS~Wl~eHPEagYN~~nsPHL~pA 128 (423)
T PF14701_consen 93 SMTDV------VLNHTANNSPWLREHPEAGYNLENSPHLRPA 128 (423)
T ss_pred EEEEE------eeccCcCCChHHHhCcccccCCCCCcchhhH
Confidence 87553 1555544 47999999865555566666543
No 143
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=37.11 E-value=68 Score=35.64 Aligned_cols=66 Identities=14% Similarity=0.192 Sum_probs=46.0
Q ss_pred cccHHHHHHHHHHCCCCEEEEccc--CCccC-CCCceeeeccc--hhHHHHHHHHHHcCCEEEEecCceec
Q 003498 61 PEMWPDLIQKAKDGGLDVIQTYVF--WNGHE-PSPGKYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPYVC 126 (815)
Q Consensus 61 ~e~W~d~l~k~Ka~GlN~I~tyvf--Wn~HE-p~~G~ydF~G~--~dL~~fl~la~~~GL~ViLR~GPyic 126 (815)
.+.-.+.++++++.+|-+=.+.+- |.-.+ -....|+|.-. -|..++|+..++.|++|++.+=|+|+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 345678899999999865444433 32221 11234666432 48999999999999999999888875
No 144
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=37.01 E-value=55 Score=36.40 Aligned_cols=70 Identities=10% Similarity=0.140 Sum_probs=50.4
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCE--EEEcccCCccCCCCceeeeccc--hhHHHHHHHHHHcCCEEEEecCceec
Q 003498 54 IHYPRS---SPEMWPDLIQKAKDGGLDV--IQTYVFWNGHEPSPGKYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPYVC 126 (815)
Q Consensus 54 iHy~R~---~~e~W~d~l~k~Ka~GlN~--I~tyvfWn~HEp~~G~ydF~G~--~dL~~fl~la~~~GL~ViLR~GPyic 126 (815)
+|..|. ..+..++.++++++.+|-. |.+=+.|.- ..+.|+|+.. -|..+|++..++.|++|++..=|+|.
T Consensus 13 ~~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~---~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~ 89 (317)
T cd06600 13 YHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMD---SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIR 89 (317)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhhhC---CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeecccc
Confidence 344454 5666789999999999864 444444432 3466776543 48999999999999999998877775
No 145
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=36.96 E-value=2.9e+02 Score=29.18 Aligned_cols=45 Identities=22% Similarity=0.332 Sum_probs=31.1
Q ss_pred HHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEE
Q 003498 65 PDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVN 118 (815)
Q Consensus 65 ~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vi 118 (815)
++.++.|+++|+|++.+- |=|| |||. ..-|.+.++..+++|+..+
T Consensus 63 ~~~~~~l~~~G~d~~~la---NNH~-----fD~G-~~gl~~t~~~l~~a~i~~~ 107 (239)
T smart00854 63 PENAAALKAAGFDVVSLA---NNHS-----LDYG-EEGLLDTLAALDAAGIAHV 107 (239)
T ss_pred HHHHHHHHHhCCCEEEec---cCcc-----cccc-hHHHHHHHHHHHHCCCCEe
Confidence 356889999999999871 2233 5543 3347777888888887654
No 146
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=36.50 E-value=1.5e+02 Score=27.95 Aligned_cols=70 Identities=13% Similarity=0.183 Sum_probs=42.3
Q ss_pred eEEEEEEecCCCCcccccCCCcceEEecCcceEEEEEECCEEEEEEecccC-----CCeeEEEeeeeccCC-ccEEEEEE
Q 003498 475 YLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLE-----FPKLTFTEGVNMRAG-INKIALLS 548 (815)
Q Consensus 475 YlwY~T~v~~~~~~~~~~~g~~~~L~v~~~~d~~~vfVNg~~vGs~~g~~~-----~~~~~~~~~v~l~~G-~n~L~lLv 548 (815)
.+-|++.|..+.++. -++.+. ..|.+.+||||+.+-...+... .........+.|.+| ...|.|+.
T Consensus 47 ~~~~~G~~~~~~~G~-------y~f~~~-~~d~~~l~idg~~vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y 118 (145)
T PF07691_consen 47 SVRWTGYFKPPETGT-------YTFSLT-SDDGARLWIDGKLVIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEY 118 (145)
T ss_dssp EEEEEEEEEESSSEE-------EEEEEE-ESSEEEEEETTEEEEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEE
T ss_pred EEEEEEEEecccCce-------EEEEEE-ecccEEEEECCEEEEcCCccccccccccccceEEEEEEeeCCeeEEEEEEE
Confidence 346788887765542 244444 5678999999999987765422 011223345556665 67888865
Q ss_pred eccC
Q 003498 549 IAVG 552 (815)
Q Consensus 549 en~G 552 (815)
.+.+
T Consensus 119 ~~~~ 122 (145)
T PF07691_consen 119 FNRG 122 (145)
T ss_dssp EECS
T ss_pred EECC
Confidence 5433
No 147
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=36.43 E-value=95 Score=35.11 Aligned_cols=82 Identities=20% Similarity=0.330 Sum_probs=57.6
Q ss_pred eeEEEccCcEEECCeEeEEEEEEeeCCCC-CcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeecc--chhHHHHH
Q 003498 31 GSVSYDSKAIAINGKRRILISGSIHYPRS-SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEG--NYDLVKFI 107 (815)
Q Consensus 31 ~~v~~d~~~~~idG~~~~l~sG~iHy~R~-~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G--~~dL~~fl 107 (815)
..|... .+.|.|.++.++.| +=-+ .++.-.+.-+.+|++|.++++.|+|=+.- --|.|.| ..-|..+.
T Consensus 80 t~v~~~--~~~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fKpRT----sp~sf~G~g~~gL~~L~ 150 (335)
T PRK08673 80 TVVKVG--DVEIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFKPRT----SPYSFQGLGEEGLKLLA 150 (335)
T ss_pred CEEEEC--CEEECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEecCCC----CCcccccccHHHHHHHH
Confidence 334553 36777788888888 2122 45666677788888999999999996433 3367765 45677777
Q ss_pred HHHHHcCCEEEEec
Q 003498 108 KLAKQAGLYVNLRI 121 (815)
Q Consensus 108 ~la~~~GL~ViLR~ 121 (815)
+.+++.||.++-.+
T Consensus 151 ~~~~~~Gl~v~tev 164 (335)
T PRK08673 151 EAREETGLPIVTEV 164 (335)
T ss_pred HHHHHcCCcEEEee
Confidence 77889999887753
No 148
>PRK14566 triosephosphate isomerase; Provisional
Probab=34.60 E-value=1e+02 Score=33.63 Aligned_cols=49 Identities=24% Similarity=0.219 Sum_probs=39.1
Q ss_pred HHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 003498 68 IQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (815)
Q Consensus 68 l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~G 122 (815)
-.++|++|++.|-+ .|..++..|.-+ +..+.+=++.|.++||.+|+++|
T Consensus 88 ~~mL~d~G~~~vii-----GHSERR~~f~Et-d~~v~~Kv~~al~~gl~pIvCvG 136 (260)
T PRK14566 88 GQMLKDAGCRYVII-----GHSERRRMYGET-SNIVAEKFAAAQKHGLTPILCVG 136 (260)
T ss_pred HHHHHHcCCCEEEE-----CcccccCCCCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 45799999998888 677777666533 45667788899999999999987
No 149
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=34.54 E-value=1.8e+02 Score=32.76 Aligned_cols=72 Identities=11% Similarity=0.120 Sum_probs=53.3
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccc--hhHHHHHHHHHHcCCEEEEecCceec
Q 003498 54 IHYPRS---SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPYVC 126 (815)
Q Consensus 54 iHy~R~---~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~--~dL~~fl~la~~~GL~ViLR~GPyic 126 (815)
+|..|. +.+...+.++++++.+|-.=.+++-|..++ .-+.|.|... -|..++++..++.|+++++.+=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 455554 667788999999999986444444444333 3466777643 37899999999999999999889998
No 150
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=33.95 E-value=71 Score=35.75 Aligned_cols=71 Identities=15% Similarity=0.143 Sum_probs=50.5
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCE--EEEcccCCccCCCCceeeeccc--hhHHHHHHHHHHcCCEEEEecCceec
Q 003498 54 IHYPRS---SPEMWPDLIQKAKDGGLDV--IQTYVFWNGHEPSPGKYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPYVC 126 (815)
Q Consensus 54 iHy~R~---~~e~W~d~l~k~Ka~GlN~--I~tyvfWn~HEp~~G~ydF~G~--~dL~~fl~la~~~GL~ViLR~GPyic 126 (815)
+|..|. +.+...+.++++++.||-. |.+=+.|- ..-+.|+|.-. -|..++++..++.|+++++..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~---~~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~ 89 (339)
T cd06604 13 YQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYM---DGYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVK 89 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhh---CCCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCcee
Confidence 455553 5566789999999999864 44444442 23445666533 37899999999999999998878775
Q ss_pred c
Q 003498 127 A 127 (815)
Q Consensus 127 a 127 (815)
.
T Consensus 90 ~ 90 (339)
T cd06604 90 V 90 (339)
T ss_pred C
Confidence 3
No 151
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=33.92 E-value=83 Score=36.28 Aligned_cols=69 Identities=14% Similarity=0.288 Sum_probs=45.5
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccc--hhHHHHHHHHHHcCCEEEEecCceecccc
Q 003498 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPYVCAEW 129 (815)
Q Consensus 60 ~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~--~dL~~fl~la~~~GL~ViLR~GPyicaEw 129 (815)
+.+...+.++.+|+.|+-.=...+-..... ..+.|.|+.. -|+.++++..++.|+++++..-|+|.-+-
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~ 111 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDS 111 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTT
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCC
Confidence 466678899999999986555443322222 4445555432 28999999999999999999888886554
No 152
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=33.81 E-value=81 Score=33.16 Aligned_cols=44 Identities=23% Similarity=0.154 Sum_probs=36.1
Q ss_pred HHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 003498 68 IQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (815)
Q Consensus 68 l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~ 121 (815)
..++|++|++.|-+ .|..++ |..+ |+.+=++.|.++||.+||++
T Consensus 74 ~~mLkd~G~~~vii-----GHSERR--f~Et---di~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 74 AEMLKDIGAKGTLI-----NHSERR--MKLA---DIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHHcCCCEEEE-----CcccCC--CCcc---HHHHHHHHHHHCCCEEEEEE
Confidence 45799999988877 666665 6555 68999999999999999987
No 153
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=32.46 E-value=69 Score=34.69 Aligned_cols=53 Identities=26% Similarity=0.253 Sum_probs=35.6
Q ss_pred HHHHHHHHHCCCCEEEEcccCC--ccCCCCceeeeccchhHHHHHHHHHHcCCEEEEe
Q 003498 65 PDLIQKAKDGGLDVIQTYVFWN--GHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLR 120 (815)
Q Consensus 65 ~d~l~k~Ka~GlN~I~tyvfWn--~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViLR 120 (815)
++.++++|++|++.|...+--+ .++...+..+|+ +..+.++.++++|+.|...
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~~ 177 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCSG 177 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEEe
Confidence 6788999999999987764411 112222234444 6677899999999986543
No 154
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=32.41 E-value=20 Score=31.94 Aligned_cols=36 Identities=33% Similarity=0.655 Sum_probs=27.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHH
Q 003498 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQ 112 (815)
Q Consensus 60 ~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~ 112 (815)
.+..|-..+|.+-. .||.|-.|||. +|.+||++|-|
T Consensus 20 s~hhWLNflQaAyR--------------L~PgPS~~DF~---qLr~flk~alk 55 (92)
T PF02228_consen 20 STHHWLNFLQAAYR--------------LQPGPSSFDFH---QLRNFLKLALK 55 (92)
T ss_dssp THHHHHHHHHHHHH--------------SS---STTTHH---HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHh--------------cCCCCCcccHH---HHHHHHHHHHc
Confidence 44669888888764 48999999999 99999999987
No 155
>KOG3833 consensus Uncharacterized conserved protein, contains RtcB domain [Function unknown]
Probab=32.40 E-value=45 Score=37.20 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=46.8
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCE--EE-Eec
Q 003498 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLY--VN-LRI 121 (815)
Q Consensus 63 ~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~--Vi-LR~ 121 (815)
.|++.+.+++..|+ +|+..-+--..|..|+.|. |+.+.+++|..+||- +| |||
T Consensus 444 ~~~sV~D~L~~~~I-~iR~aSpklvmEEAPesYK-----dVtdVVdtc~~aGiskK~~klrP 499 (505)
T KOG3833|consen 444 THESVLDKLRSRGI-AIRVASPKLVMEEAPESYK-----DVTDVVDTCDAAGISKKAIKLRP 499 (505)
T ss_pred cHHHHHHHHHhCCe-EEEeCCccchhhhCchhhh-----hHHHHhhhhhhcccchhhhcccc
Confidence 49999999999999 7888888889999999986 899999999999986 44 775
No 156
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=32.33 E-value=1.1e+02 Score=37.58 Aligned_cols=76 Identities=17% Similarity=0.296 Sum_probs=54.5
Q ss_pred CcccHHHHHHHHHHCCCCEEEEc-cc-----CCc-cCCC-Cceeee---------ccchhHHHHHHHHHHcCCEEEEec-
Q 003498 60 SPEMWPDLIQKAKDGGLDVIQTY-VF-----WNG-HEPS-PGKYYF---------EGNYDLVKFIKLAKQAGLYVNLRI- 121 (815)
Q Consensus 60 ~~e~W~d~l~k~Ka~GlN~I~ty-vf-----Wn~-HEp~-~G~ydF---------~G~~dL~~fl~la~~~GL~ViLR~- 121 (815)
.+..|+ .++++|+++|-+- ++ |.. .-|. .|-||- .-..|++++++.|++.||+||+-.
T Consensus 76 ~~~~wd----yL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 76 DDALWK----ALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred ChHHHH----HHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 455665 6888999999862 33 332 1133 466663 334699999999999999999763
Q ss_pred -------CceeccccCCCCCCcccc
Q 003498 122 -------GPYVCAEWNFGGFPVWLK 139 (815)
Q Consensus 122 -------GPyicaEw~~GG~P~WL~ 139 (815)
-||.-||.+.+-+|.|.+
T Consensus 152 pnHTs~ghdF~lAr~~~~~Y~g~Y~ 176 (688)
T TIGR02455 152 PAHTGKGADFRLAELAHGDYPGLYH 176 (688)
T ss_pred CCCCCCCcchHHHhhcCCCCCCcee
Confidence 248888999888888884
No 157
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=32.28 E-value=2.1e+02 Score=31.56 Aligned_cols=66 Identities=18% Similarity=0.147 Sum_probs=46.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccc----CCcc-CCC--CceeeeccchhHHHHHHHHHHcCCEEEEecCceeccc
Q 003498 60 SPEMWPDLIQKAKDGGLDVIQTYVF----WNGH-EPS--PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAE 128 (815)
Q Consensus 60 ~~e~W~d~l~k~Ka~GlN~I~tyvf----Wn~H-Ep~--~G~ydF~G~~dL~~fl~la~~~GL~ViLR~GPyicaE 128 (815)
+.+.-.+.|+.|...|+|++..|+- +..+ |-. +|.|.= .|+.++++.|++.|+.||--+=-.-+.|
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~---~ei~ei~~yA~~~gI~vIPeid~pGH~~ 87 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTK---EEIREIDDYAAELGIEVIPLIQTLGHLE 87 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCH---HHHHHHHHHHHHcCCEEEecCCCHHHHH
Confidence 4567889999999999999998753 3222 111 344433 4999999999999999997654333444
No 158
>PF12733 Cadherin-like: Cadherin-like beta sandwich domain
Probab=32.17 E-value=99 Score=27.23 Aligned_cols=55 Identities=20% Similarity=0.291 Sum_probs=34.0
Q ss_pred EEEEecCCCCcccccCCCcceEEecCcceEEEEEECCEEEEEEecccCCCeeEEEeeeeccCCccE-EEEEEe
Q 003498 478 YMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGINK-IALLSI 549 (815)
Q Consensus 478 Y~T~v~~~~~~~~~~~g~~~~L~v~~~~d~~~vfVNg~~vGs~~g~~~~~~~~~~~~v~l~~G~n~-L~lLve 549 (815)
|+..++.+.+. ..+........+.|.|||..+... .....++|..|.|. |.|-|.
T Consensus 16 Y~~~V~~~~~~--------v~v~a~~~~~~a~v~vng~~~~~~---------~~~~~i~L~~G~n~~i~i~Vt 71 (88)
T PF12733_consen 16 YTVTVPNDVDS--------VTVTATPEDSGATVTVNGVPVNSG---------GYSATIPLNEGENTVITITVT 71 (88)
T ss_pred EEEEECCCceE--------EEEEEEECCCCEEEEEcCEEccCC---------CcceeeEccCCCceEEEEEEE
Confidence 66666543221 244445556789999999776432 01224557789888 888774
No 159
>PLN02561 triosephosphate isomerase
Probab=32.13 E-value=89 Score=33.96 Aligned_cols=50 Identities=18% Similarity=0.075 Sum_probs=40.5
Q ss_pred HHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 003498 67 LIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (815)
Q Consensus 67 ~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~G 122 (815)
...++|++|++.|-+ .|..++..|.-+ +..+.+=++.|.++||.+||++|
T Consensus 80 S~~mL~d~G~~~vii-----GHSERR~~f~Et-d~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 80 SAEMLVNLGIPWVIL-----GHSERRALLGES-NEFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred CHHHHHHcCCCEEEE-----CcccccCccCCC-hHHHHHHHHHHHHCcCEEEEEcC
Confidence 345799999998888 777777766544 56677888899999999999988
No 160
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=31.88 E-value=1.9e+02 Score=30.51 Aligned_cols=90 Identities=14% Similarity=0.138 Sum_probs=65.4
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeec-cchhHHHHHHHHHHcCCEEEEecCceeccccCCCCCCccc
Q 003498 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFE-GNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWL 138 (815)
Q Consensus 60 ~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~-G~~dL~~fl~la~~~GL~ViLR~GPyicaEw~~GG~P~WL 138 (815)
.+..+++.++.++++|+.++-+|..... ....|..+ |..|-..-+.+|+++|+. -|-|.++
T Consensus 50 ~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~p---------------~gs~IYf 111 (212)
T cd06418 50 SKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGFP---------------PGTIIYF 111 (212)
T ss_pred CCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCCC---------------CCCEEEE
Confidence 5788999999999999999999988766 23333433 778999999999999872 1333344
Q ss_pred ccCCCeeeecCChhhHHHHHHHHHHHHHHHHhc
Q 003498 139 KYIPGINFRTENGPFKAEMHKFTKKIVDMMKAE 171 (815)
Q Consensus 139 ~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~ 171 (815)
--+.+. .+..+...+..|++.+.+.|+..
T Consensus 112 avD~d~----~~~~~~~~v~~Y~~a~~~~l~~~ 140 (212)
T cd06418 112 AVDFDA----LDDEVTEVILPYFRGWNDALHEA 140 (212)
T ss_pred EeecCC----CcchhHHHHHHHHHHHHHHHHhc
Confidence 322221 22337788899999999999844
No 161
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=31.83 E-value=52 Score=37.27 Aligned_cols=66 Identities=9% Similarity=0.040 Sum_probs=45.2
Q ss_pred EeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 003498 53 SIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (815)
Q Consensus 53 ~iHy~R~~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~ 121 (815)
+-++ |.+...=....+.++++|-++|-+.|+|.-.++. .-+-.-..+|.++.+.|+++||-++|-+
T Consensus 98 t~~g-r~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~--~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 98 TAPG-RLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDD--AINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred CCCC-CCccccccccHHHHHHcCCCEEEEEEEeCCCcch--HHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 3444 5444332224678999999999999999955331 0011122479999999999999988854
No 162
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=31.79 E-value=61 Score=34.54 Aligned_cols=56 Identities=14% Similarity=0.025 Sum_probs=38.1
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCCC----ceeeeccchhHHHHHHHHHHcCCEEEEec
Q 003498 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSP----GKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (815)
Q Consensus 62 e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~----G~ydF~G~~dL~~fl~la~~~GL~ViLR~ 121 (815)
+.+++.|+.++++|..+|.+ |..|.... -.+... ...|.++.+.|+++|+.+.+.+
T Consensus 90 ~~~~~~i~~a~~lGa~~i~~---~~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 90 DMIKLAMDMAKEMNAGYTLI---SAAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHHhCCCEEEE---cCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEec
Confidence 35667889999999999966 32332211 112211 1368889999999999999886
No 163
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=31.47 E-value=66 Score=37.23 Aligned_cols=67 Identities=24% Similarity=0.279 Sum_probs=45.9
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCE-EEEecCceeccccCCCCCC
Q 003498 59 SSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLY-VNLRIGPYVCAEWNFGGFP 135 (815)
Q Consensus 59 ~~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~-ViLR~GPyicaEw~~GG~P 135 (815)
...+.-+..|+.+|+.|+|+|=+++.=.---+.+-.|.= -..|-+..++++.+.|.. .+|.+| ||||
T Consensus 190 ~~~~~~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~-Ai~dAr~vfd~g~e~Gf~m~~LdiG---------GGf~ 257 (448)
T KOG0622|consen 190 CSLDNCRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRD-AISDARNVFDMGAELGFEMDILDIG---------GGFP 257 (448)
T ss_pred CCHHHHHHHHHHHHHcCceEEEEEEEecCCCCCHHHHHH-HHHHHHHHHHHHHhcCceEEEeecC---------CCCC
Confidence 345677889999999999999997654322222222221 124666778888899998 568887 8886
No 164
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=31.39 E-value=73 Score=36.02 Aligned_cols=109 Identities=21% Similarity=0.370 Sum_probs=0.0
Q ss_pred CEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCceeccccCCCCCCcccccCCCeeeecCChhhHHH
Q 003498 77 DVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAE 156 (815)
Q Consensus 77 N~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~GPyicaEw~~GG~P~WL~~~p~i~~Rt~d~~y~~~ 156 (815)
+-|.+.|+|+++--+ --=...|+.|+++|++|+-- |.-||+ +-+.|+.. +-.++ .+.
T Consensus 31 ~yvD~fvywsh~~~~---------iPp~~~idaAHknGV~Vlgt----i~~e~~--~~~~~~~~-----lL~~~---~~~ 87 (339)
T cd06547 31 QYVDTFVYFSHSAVT---------IPPADWINAAHRNGVPVLGT----FIFEWT--GQVEWLED-----FLKKD---EDG 87 (339)
T ss_pred hhhheeecccCcccc---------CCCcHHHHHHHhcCCeEEEE----EEecCC--CchHHHHH-----HhccC---ccc
Q ss_pred HHHHHHHHHHHHHhccccccCCCceEEecccccc-cCcccccCCCCHHHHHHHHHHHHhcCCCcc
Q 003498 157 MHKFTKKIVDMMKAERLFESQGGPIILSQIENEY-GPMEYEIGAPGRSYTRWAAKMAVGLGTGVP 220 (815)
Q Consensus 157 ~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEy-g~~~~~~~~~~~~Y~~~l~~~~~~~g~~vP 220 (815)
..++.++|+++.+.+.+ +| +.+-+|+.. .. +....+..+++++..++.-.+|
T Consensus 88 ~~~~a~kLv~lak~yGf---DG---w~iN~E~~~~~~------~~~~~l~~F~~~L~~~~~~~~~ 140 (339)
T cd06547 88 SFPVADKLVEVAKYYGF---DG---WLINIETELGDA------EKAKRLIAFLRYLKAKLHENVP 140 (339)
T ss_pred chHHHHHHHHHHHHhCC---Cc---eEeeeeccCCcH------HHHHHHHHHHHHHHHHHhhcCC
No 165
>PLN02877 alpha-amylase/limit dextrinase
Probab=30.99 E-value=90 Score=40.07 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHcCCEEEEec
Q 003498 101 YDLVKFIKLAKQAGLYVNLRI 121 (815)
Q Consensus 101 ~dL~~fl~la~~~GL~ViLR~ 121 (815)
.++.++|+.++++||.|||-.
T Consensus 466 ~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 469999999999999999984
No 166
>PLN02429 triosephosphate isomerase
Probab=30.85 E-value=88 Score=35.10 Aligned_cols=49 Identities=24% Similarity=0.140 Sum_probs=34.8
Q ss_pred HHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 003498 68 IQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (815)
Q Consensus 68 l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~G 122 (815)
..++|++|++.|-+ .|..++-.|.-+ +..+.+=++.|.++||.+|+++|
T Consensus 140 a~mLkd~Gv~~Vii-----GHSERR~~f~Et-d~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 140 VEQLKDLGCKWVIL-----GHSERRHVIGEK-DEFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred HHHHHHcCCCEEEe-----CccccCCCCCcC-HHHHHHHHHHHHHCcCEEEEEcC
Confidence 45789999988887 677666666533 22233334449999999999988
No 167
>PRK14565 triosephosphate isomerase; Provisional
Probab=30.73 E-value=93 Score=33.50 Aligned_cols=50 Identities=18% Similarity=0.217 Sum_probs=37.2
Q ss_pred HHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 003498 67 LIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (815)
Q Consensus 67 ~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~G 122 (815)
..+++|++|++.+-+ .|..++-.|+-+ +..+.+=++.|.++||.+|+++|
T Consensus 77 S~~mLkd~G~~~vii-----GHSERR~~f~Et-d~~V~~Kv~~al~~gl~pIvCiG 126 (237)
T PRK14565 77 SAKMLKECGCSYVIL-----GHSERRSTFHET-DSDIRLKAESAIESGLIPIICVG 126 (237)
T ss_pred CHHHHHHcCCCEEEE-----CcccccCcCCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 345799999998888 677776666544 23333444889999999999988
No 168
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=30.51 E-value=2.1e+02 Score=32.07 Aligned_cols=155 Identities=17% Similarity=0.180 Sum_probs=87.5
Q ss_pred cceeEEEccCcEEECCeEeEEEEEEee-CCCCCcc---cHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHH
Q 003498 29 VEGSVSYDSKAIAINGKRRILISGSIH-YPRSSPE---MWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLV 104 (815)
Q Consensus 29 ~~~~v~~d~~~~~idG~~~~l~sG~iH-y~R~~~e---~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~ 104 (815)
+...|++-+..+.+|. .=+-+.++ -+-...+ .-...+...++.|.+||=.--.=+ =-+|..
T Consensus 14 ~~lGvTl~HEHl~~~~---~~~~~~~~~d~~~~~~~~a~~~~e~~~~~a~Gg~TIVD~T~~~------------~GRdv~ 78 (316)
T COG1735 14 ADLGVTLMHEHLFIDP---YEIAGGLKNDPYDEDDEVALAIAELKRLMARGGQTIVDATNIG------------IGRDVL 78 (316)
T ss_pred HHccceeehhhhccch---HHHhhcCCCCcccccHHHHHHHHHHHHHHHcCCCeEeeCCccc------------cCcCHH
Confidence 3466788888888886 11111222 1111111 123356666778888876422111 125899
Q ss_pred HHHHHHHHcCCEEEEecCceeccccCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEe
Q 003498 105 KFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILS 184 (815)
Q Consensus 105 ~fl~la~~~GL~ViLR~GPyicaEw~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~ 184 (815)
+..+.+++.||.++.-.|+|.-+.|+ .|+...| ++.+...+++.+++ .+ .|+=|..
T Consensus 79 ~m~~vs~atglnIV~~TGfy~~~~~p-----~~~~~~~--------------i~~~ae~~v~ei~~-Gi----~gT~ikA 134 (316)
T COG1735 79 KMRRVAEATGLNIVAATGFYKAAFHP-----EYFALRP--------------IEELAEFVVKEIEE-GI----AGTGIKA 134 (316)
T ss_pred HHHHHHHHhCCcEEEeccccccccch-----hHHhhCC--------------HHHHHHHHHHHHHh-cc----cCCcccc
Confidence 99999999999999999999998875 6776544 45556666666662 11 1332333
Q ss_pred cccccccCcccccCCCCHHHHHHHHHHHHhc-CCCcceeecCC
Q 003498 185 QIENEYGPMEYEIGAPGRSYTRWAAKMAVGL-GTGVPWIMCKQ 226 (815)
Q Consensus 185 QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~~-g~~vP~~~~~~ 226 (815)
=|=-|-|.+.. +. +.=.+-|+..|++. .+++|+.+-.+
T Consensus 135 GiIk~~~~~~~-iT---p~Eek~lrAaA~A~~~Tg~Pi~tHt~ 173 (316)
T COG1735 135 GIIKEAGGSPA-IT---PLEEKSLRAAARAHKETGAPISTHTP 173 (316)
T ss_pred ceeeeccCccc-CC---HHHHHHHHHHHHHhhhcCCCeEEecc
Confidence 22244444321 22 22234455555443 56889877553
No 169
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=30.17 E-value=94 Score=35.01 Aligned_cols=73 Identities=12% Similarity=0.125 Sum_probs=49.2
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEcc----------cCCccCCC---------Cceeeecc---chhHHHHHH
Q 003498 54 IHYPRS---SPEMWPDLIQKAKDGGLDVIQTYV----------FWNGHEPS---------PGKYYFEG---NYDLVKFIK 108 (815)
Q Consensus 54 iHy~R~---~~e~W~d~l~k~Ka~GlN~I~tyv----------fWn~HEp~---------~G~ydF~G---~~dL~~fl~ 108 (815)
+|..|. ..+.-.+.++++++.||..=-+++ .|+-..-. -+.++|.. --|..++|+
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 455563 456678899999999986544333 34422111 13334431 128999999
Q ss_pred HHHHcCCEEEEecCceec
Q 003498 109 LAKQAGLYVNLRIGPYVC 126 (815)
Q Consensus 109 la~~~GL~ViLR~GPyic 126 (815)
..++.|++|+|..=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999999888885
No 170
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=29.97 E-value=1.8e+02 Score=33.98 Aligned_cols=84 Identities=19% Similarity=0.134 Sum_probs=59.1
Q ss_pred CcEEECCeEeEEEEEEeeCCCCC---cccHHHHHHHHHHCCCCE--E--EEcccCCccCCCCceeeeccchhHHHHHHHH
Q 003498 38 KAIAINGKRRILISGSIHYPRSS---PEMWPDLIQKAKDGGLDV--I--QTYVFWNGHEPSPGKYYFEGNYDLVKFIKLA 110 (815)
Q Consensus 38 ~~~~idG~~~~l~sG~iHy~R~~---~e~W~d~l~k~Ka~GlN~--I--~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la 110 (815)
++..+.+.-|+||.++-+-++.+ ++.-+...+.+++.|++. | .....-|+-.|.+..++++ ..-+.+-|+.|
T Consensus 149 ~a~~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYlINLASpd~e~rekS-v~~~~~eL~rA 227 (413)
T PTZ00372 149 NAYNIAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYLINLANPDKEKREKS-YDAFLDDLQRC 227 (413)
T ss_pred HHHHcCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCceecCCCCCHHHHHHH-HHHHHHHHHHH
Confidence 45677889999998887766643 344455567778888862 2 2222278888888887776 34567778889
Q ss_pred HHcCCE-EEEecC
Q 003498 111 KQAGLY-VNLRIG 122 (815)
Q Consensus 111 ~~~GL~-ViLR~G 122 (815)
.+.|.. |++.||
T Consensus 228 ~~LGa~~VV~HPG 240 (413)
T PTZ00372 228 EQLGIKLYNFHPG 240 (413)
T ss_pred HHcCCCEEEECCC
Confidence 999998 668787
No 171
>PTZ00333 triosephosphate isomerase; Provisional
Probab=29.87 E-value=1e+02 Score=33.42 Aligned_cols=49 Identities=29% Similarity=0.247 Sum_probs=41.1
Q ss_pred HHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 003498 68 IQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (815)
Q Consensus 68 l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~G 122 (815)
-.++|++|++.|-+ .|..++-.|.-+ +.++.+=++.|.++||.+||++|
T Consensus 82 ~~mL~d~G~~~vii-----GHSERR~~f~Et-d~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 82 AEMLKDLGINWTIL-----GHSERRQYFGET-NEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred HHHHHHcCCCEEEE-----CcccccCcCCCC-cHHHHHHHHHHHHCCCEEEEEcC
Confidence 35799999999988 787777777543 66888889999999999999988
No 172
>PRK15492 triosephosphate isomerase; Provisional
Probab=29.78 E-value=1e+02 Score=33.55 Aligned_cols=49 Identities=16% Similarity=0.126 Sum_probs=39.7
Q ss_pred HHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 003498 68 IQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (815)
Q Consensus 68 l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~G 122 (815)
..++|++|++.|-+ .|..++-.|.-+ +..+.+=++.|.++||.+|+++|
T Consensus 87 a~mLkd~G~~~vii-----GHSERR~~f~Et-d~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 87 PLMLKEIGTQLVMI-----GHSERRHKFGET-DQEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred HHHHHHcCCCEEEE-----CccccccccCcc-hHHHHHHHHHHHHCCCEEEEEcC
Confidence 45799999999988 787777766533 55667788889999999999987
No 173
>PRK10426 alpha-glucosidase; Provisional
Probab=29.55 E-value=3.1e+02 Score=33.73 Aligned_cols=64 Identities=17% Similarity=0.318 Sum_probs=42.2
Q ss_pred cHHHHHHHHHHCCCCEEEEcc-cCCccCCC----Cc--eeeeccc--hhHHHHHHHHHHcCCEEEEecCceec
Q 003498 63 MWPDLIQKAKDGGLDVIQTYV-FWNGHEPS----PG--KYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPYVC 126 (815)
Q Consensus 63 ~W~d~l~k~Ka~GlN~I~tyv-fWn~HEp~----~G--~ydF~G~--~dL~~fl~la~~~GL~ViLR~GPyic 126 (815)
.-.+.++++|+.||-+=.+++ .|...... +. .|.|+-. -|..++|+..++.|+++++.+=|||+
T Consensus 222 ~v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~ 294 (635)
T PRK10426 222 VVQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLA 294 (635)
T ss_pred HHHHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccC
Confidence 345789999999975433332 35432211 11 1233222 38899999999999999999888875
No 174
>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.43 E-value=1.7e+02 Score=29.05 Aligned_cols=47 Identities=28% Similarity=0.353 Sum_probs=35.5
Q ss_pred HHHHHHHCCCCEEEEcccCCccCCCCceeeeccc--hhHHHHHHHHHHcCCEEEE
Q 003498 67 LIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGN--YDLVKFIKLAKQAGLYVNL 119 (815)
Q Consensus 67 ~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~--~dL~~fl~la~~~GL~ViL 119 (815)
.++.+.+.+-.||+|-.+|- .|.-.|.|. .+|-+.+. |+...+.|+.
T Consensus 39 t~qeLeal~~~T~ete~Pw~-----~gn~rf~Gvsls~Ll~~l~-ak~tslt~iA 87 (155)
T COG3915 39 TLQELEALPDETIETETPWT-----QGNTRFKGVSLSALLAWLG-AKQTSLTVIA 87 (155)
T ss_pred cHHHHhcCCcceEEEecCcc-----cCceeecceeHHHHHHHhh-ccCcceEEEE
Confidence 35677789999999999995 477778886 36667777 6666777774
No 175
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=29.31 E-value=1.5e+02 Score=24.62 Aligned_cols=44 Identities=32% Similarity=0.397 Sum_probs=32.8
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEE
Q 003498 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNL 119 (815)
Q Consensus 63 ~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViL 119 (815)
..++.++++|+.|++.|-+= -|. ++. ...+|.+++++.||.||.
T Consensus 16 ~~~~~~~~a~~~g~~~v~iT----Dh~------~~~---~~~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 16 SPEELVKRAKELGLKAIAIT----DHG------NLF---GAVEFYKAAKKAGIKPII 59 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEe----eCC------ccc---CHHHHHHHHHHcCCeEEE
Confidence 46789999999999998761 121 233 357888999999998764
No 176
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=29.15 E-value=72 Score=36.81 Aligned_cols=55 Identities=24% Similarity=0.336 Sum_probs=39.4
Q ss_pred HHHHHHHHCCCCEEEE-cccCC---ccCCCCcee-----eeccchhHHHHHHHHHHcCCEEEEe
Q 003498 66 DLIQKAKDGGLDVIQT-YVFWN---GHEPSPGKY-----YFEGNYDLVKFIKLAKQAGLYVNLR 120 (815)
Q Consensus 66 d~l~k~Ka~GlN~I~t-yvfWn---~HEp~~G~y-----dF~G~~dL~~fl~la~~~GL~ViLR 120 (815)
+.|.-+|.+|+++|-+ .++=+ .|---.-.| .|....|+.++++.|++.||+||+-
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D 96 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILD 96 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 7888899999999964 33321 221100000 5777889999999999999999986
No 177
>PRK14567 triosephosphate isomerase; Provisional
Probab=28.85 E-value=1.1e+02 Score=33.22 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=39.5
Q ss_pred HHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 003498 68 IQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (815)
Q Consensus 68 l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~G 122 (815)
-.++|++|++.|-+ .|..++--|.-+ +..+.+=++.|.++||.+|+++|
T Consensus 78 ~~mLkd~G~~yvii-----GHSERR~~f~Et-d~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 78 ARMLEDIGCDYLLI-----GHSERRSLFAES-DEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHHHcCCCEEEE-----CcccccCccCCC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 34799999999888 777777666644 45677788889999999999988
No 178
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=28.75 E-value=43 Score=35.28 Aligned_cols=16 Identities=31% Similarity=0.628 Sum_probs=14.1
Q ss_pred ceEEEEECCeeccccc
Q 003498 648 GKGQVWVNGQSIGRHW 663 (815)
Q Consensus 648 gKG~~wVNG~niGRYW 663 (815)
.+|.+||||++|.|.=
T Consensus 55 t~G~i~~~~~dl~~l~ 70 (223)
T COG2884 55 TRGKILVNGHDLSRLK 70 (223)
T ss_pred CCceEEECCeeccccc
Confidence 5699999999999873
No 179
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=28.59 E-value=92 Score=39.74 Aligned_cols=21 Identities=14% Similarity=0.390 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHcCCEEEEec
Q 003498 101 YDLVKFIKLAKQAGLYVNLRI 121 (815)
Q Consensus 101 ~dL~~fl~la~~~GL~ViLR~ 121 (815)
.++.++|+.|+++||.|||-.
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 478899999999999999974
No 180
>PLN02540 methylenetetrahydrofolate reductase
Probab=27.78 E-value=1.2e+02 Score=36.85 Aligned_cols=89 Identities=19% Similarity=0.238 Sum_probs=60.0
Q ss_pred HHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcC--CEEEEecCceec-------cccCCCCCCccc
Q 003498 68 IQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAG--LYVNLRIGPYVC-------AEWNFGGFPVWL 138 (815)
Q Consensus 68 l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~G--L~ViLR~GPyic-------aEw~~GG~P~WL 138 (815)
|++=.++|.+.|-|=.| ||.+ .+.+|++.|+++| +.+|..+-|-.. ++|..--+|.|+
T Consensus 162 Lk~KvdAGAdFiITQlf----------FD~d---~f~~f~~~~r~~Gi~vPIipGImPI~S~k~l~r~~~l~Gi~IP~~i 228 (565)
T PLN02540 162 LKEKVDAGADLIITQLF----------YDTD---IFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEI 228 (565)
T ss_pred HHHHHHcCCCEEeeccc----------cCHH---HHHHHHHHHHhcCCCCCEEeeecccCCHHHHHHHHhccCCcCCHHH
Confidence 33334579999999444 4444 6789999999998 667777777654 346555578888
Q ss_pred ccCCCeeeecCChhhHHHHHHHHHHHHHHHHh
Q 003498 139 KYIPGINFRTENGPFKAEMHKFTKKIVDMMKA 170 (815)
Q Consensus 139 ~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~ 170 (815)
.+.=. ....+++..++.--++..++++.|.+
T Consensus 229 ~~rLe-~~kddde~v~~~Gieia~e~~~~L~~ 259 (565)
T PLN02540 229 TAALE-PIKDNDEAVKAYGIHLGTEMCKKILA 259 (565)
T ss_pred HHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 76210 12345566677777778888887773
No 181
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=27.68 E-value=89 Score=38.73 Aligned_cols=55 Identities=25% Similarity=0.330 Sum_probs=40.7
Q ss_pred HHHHHHHCCCCEEEE-cccCCccCCCC---c-eeee----------------cc-----chhHHHHHHHHHHcCCEEEEe
Q 003498 67 LIQKAKDGGLDVIQT-YVFWNGHEPSP---G-KYYF----------------EG-----NYDLVKFIKLAKQAGLYVNLR 120 (815)
Q Consensus 67 ~l~k~Ka~GlN~I~t-yvfWn~HEp~~---G-~ydF----------------~G-----~~dL~~fl~la~~~GL~ViLR 120 (815)
.|.-+|++|+++||. +|+.-..|+.. | .|+| .. .+.+...|+.++++||-|||-
T Consensus 205 ~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 205 IIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 499999999999996 68866655543 2 2222 22 247788899999999999997
Q ss_pred c
Q 003498 121 I 121 (815)
Q Consensus 121 ~ 121 (815)
.
T Consensus 285 V 285 (697)
T COG1523 285 V 285 (697)
T ss_pred E
Confidence 3
No 182
>PRK09875 putative hydrolase; Provisional
Probab=26.99 E-value=2.7e+02 Score=30.90 Aligned_cols=89 Identities=10% Similarity=0.065 Sum_probs=57.6
Q ss_pred eEEEccCcEEECCeEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHH
Q 003498 32 SVSYDSKAIAINGKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAK 111 (815)
Q Consensus 32 ~v~~d~~~~~idG~~~~l~sG~iHy~R~~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~ 111 (815)
.+++-+..++++-.+.. +......-..+.=.+.|+.+|+.|.+||=--.... -.+|.....++++
T Consensus 7 G~tl~HEHl~~~~~~~~---~~~~~~l~~~~~~~~el~~~~~~Gg~tiVd~T~~g------------~GRd~~~l~~is~ 71 (292)
T PRK09875 7 GYTLAHEHLHIDLSGFK---NNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRY------------MGRNAQFMLDVMR 71 (292)
T ss_pred CcceecCCeEecChhhc---CCcccccccHHHHHHHHHHHHHhCCCeEEecCCCc------------cCcCHHHHHHHHH
Confidence 46777777777663221 11111111233345578889999998874322222 2368999999999
Q ss_pred HcCCEEEEecCceeccccCCCCCCccccc
Q 003498 112 QAGLYVNLRIGPYVCAEWNFGGFPVWLKY 140 (815)
Q Consensus 112 ~~GL~ViLR~GPyicaEw~~GG~P~WL~~ 140 (815)
+-|+.||.-.|-|.... +|.|+..
T Consensus 72 ~tgv~Iv~~TG~y~~~~-----~p~~~~~ 95 (292)
T PRK09875 72 ETGINVVACTGYYQDAF-----FPEHVAT 95 (292)
T ss_pred HhCCcEEEcCcCCCCcc-----CCHHHhc
Confidence 99999999999885433 5788874
No 183
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=26.51 E-value=94 Score=33.18 Aligned_cols=59 Identities=20% Similarity=0.064 Sum_probs=37.8
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCCC-ceeeeccchhHHHHHHHHHHcCCEEEEec
Q 003498 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSP-GKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (815)
Q Consensus 62 e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~-G~ydF~G~~dL~~fl~la~~~GL~ViLR~ 121 (815)
+++++.|+.++++|.+.|.+.-+-...++.. -.++. -...|.+++++|+++|+.+.+.+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR-FIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH-HHHHHHHHHHHHHHhCCEEEEEe
Confidence 4578889999999999998631100001111 01110 01357888899999999999886
No 184
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=26.50 E-value=3e+02 Score=29.41 Aligned_cols=103 Identities=18% Similarity=0.134 Sum_probs=56.2
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcccCCccCCC-Cceeeec----cchhHHHHHHHHHHcCCEEEEecCceeccccCCCC
Q 003498 59 SSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGKYYFE----GNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGG 133 (815)
Q Consensus 59 ~~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~-~G~ydF~----G~~dL~~fl~la~~~GL~ViLR~GPyicaEw~~GG 133 (815)
..++.-+..-+.+++.|+.+...- ...|.+. ++.-|=. ....+.+-|++|++.|..+|.-+ |
T Consensus 54 ~~~~~~~~l~~~l~~~gl~i~~~~--~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~-----------~ 120 (283)
T PRK13209 54 WSREQRLALVNALVETGFRVNSMC--LSAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQLA-----------G 120 (283)
T ss_pred CCHHHHHHHHHHHHHcCCceeEEe--cccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEC-----------C
Confidence 356667777888889999876541 1122211 1110100 11257788999999999866421 1
Q ss_pred CCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccc
Q 003498 134 FPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYG 191 (815)
Q Consensus 134 ~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg 191 (815)
.+.|.. .+++...+.+...++.|++..+++ | |-+.|||-.+
T Consensus 121 ~~~~~~--------~~~~~~~~~~~~~l~~l~~~A~~~-------G--V~i~iE~~~~ 161 (283)
T PRK13209 121 YDVYYE--------QANNETRRRFIDGLKESVELASRA-------S--VTLAFEIMDT 161 (283)
T ss_pred cccccc--------ccHHHHHHHHHHHHHHHHHHHHHh-------C--CEEEEeecCC
Confidence 222211 122334455555667777777633 3 4456888543
No 185
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=25.94 E-value=3.5e+02 Score=31.26 Aligned_cols=117 Identities=17% Similarity=0.183 Sum_probs=63.5
Q ss_pred CCCceeeeccchhHHHHHHHHHHcCCEEEEecCceeccccCCCCCCcccccCCCe--------eeecCChhhHHHHHHHH
Q 003498 90 PSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGI--------NFRTENGPFKAEMHKFT 161 (815)
Q Consensus 90 p~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~GPyicaEw~~GG~P~WL~~~p~i--------~~Rt~d~~y~~~~~~~~ 161 (815)
+..|.|||+.+..=+.|+++|++.|...++-+- =-.|.|+...... .+| +...++...|+
T Consensus 93 ~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aFS---------NSPP~~MT~NG~~~g~~~~~~NLk---~d~y~~FA~YL 160 (384)
T PF14587_consen 93 PADGSYDWDADAGQRWFLKAAKERGVNIFEAFS---------NSPPWWMTKNGSASGGDDGSDNLK---PDNYDAFADYL 160 (384)
T ss_dssp -TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SSS-GGGSSSSSSB-S-SSS-SS----TT-HHHHHHHH
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEee---------cCCCHHHhcCCCCCCCCccccccC---hhHHHHHHHHH
Confidence 567999999887788899999999999776531 2368888763211 122 33456667777
Q ss_pred HHHHHHHHhccccccCCCceEEecccccccCcccccC---------CCCHHHHHHHHHHHHhcCCCcceeecC
Q 003498 162 KKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIG---------APGRSYTRWAAKMAVGLGTGVPWIMCK 225 (815)
Q Consensus 162 ~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~---------~~~~~Y~~~l~~~~~~~g~~vP~~~~~ 225 (815)
..++++++++.+ +|=-+=.=||...- ...+ +...+.++.|...+++.|+..-+.+|+
T Consensus 161 a~Vv~~~~~~GI------~f~~IsP~NEP~~~-W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~E 226 (384)
T PF14587_consen 161 ADVVKHYKKWGI------NFDYISPFNEPQWN-WAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACE 226 (384)
T ss_dssp HHHHHHHHCTT--------EEEEE--S-TTS--GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEE
T ss_pred HHHHHHHHhcCC------ccceeCCcCCCCCC-CCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecc
Confidence 777777764332 33334445887532 1111 123567788888888888877555544
No 186
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=25.66 E-value=1.9e+02 Score=31.46 Aligned_cols=54 Identities=24% Similarity=0.353 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHcCCEEEEecCceeccccCCCCCCcccccCCCeeeecCChhhHHHHHHHHHH
Q 003498 102 DLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKK 163 (815)
Q Consensus 102 dL~~fl~la~~~GL~ViLR~GPyicaEw~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~ 163 (815)
...+++..|++.|-..+|-| |-.-||+|.|... ++.+-+.++.=+++.++|+..
T Consensus 38 K~~~~~~Eaa~~Ga~LV~fP------EAfiGGYPrg~~F--g~~~G~r~~eGR~ef~kY~a~ 91 (337)
T KOG0805|consen 38 KAEKYIVEAASKGAELVLFP------EAFIGGYPRGFRF--GLAVGVRNEEGRDEFRKYHAS 91 (337)
T ss_pred HHHHHHHHHhcCCceEEEee------hHhccCCCCccee--eEEEeecchhhhHHHHHHHHH
Confidence 35688999999999999887 5556999999875 445545555555555565543
No 187
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=25.57 E-value=3.6e+02 Score=28.41 Aligned_cols=125 Identities=20% Similarity=0.198 Sum_probs=69.8
Q ss_pred cccHHHHHHHHHHCCCCE-EEE--cccCCccCC---CCc--eeeec-----------c--chhHHHHHHHHHHcCCEEEE
Q 003498 61 PEMWPDLIQKAKDGGLDV-IQT--YVFWNGHEP---SPG--KYYFE-----------G--NYDLVKFIKLAKQAGLYVNL 119 (815)
Q Consensus 61 ~e~W~d~l~k~Ka~GlN~-I~t--yvfWn~HEp---~~G--~ydF~-----------G--~~dL~~fl~la~~~GL~ViL 119 (815)
++.-.+.++++|+.|+.+ |+| |+.|..-+. .=. -+|+. | +..+.+.|+.+.+.|..+.+
T Consensus 53 ~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~v~i 132 (213)
T PRK10076 53 AEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIP 132 (213)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEE
Confidence 355578899999999863 555 444422211 111 22322 2 23455677778888888888
Q ss_pred ecCceeccccCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEecccc-----------
Q 003498 120 RIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIEN----------- 188 (815)
Q Consensus 120 R~GPyicaEw~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIEN----------- 188 (815)
|. | -+|++ ++++.-++++.+|++.+. +. +|-+..--+
T Consensus 133 R~-~----------------vIPg~---nd~~e~i~~ia~~l~~l~--~~----------~~~llpyh~~g~~Ky~~lg~ 180 (213)
T PRK10076 133 RL-P----------------LIPGF---TLSRENMQQALDVLIPLG--IK----------QIHLLPFHQYGEPKYRLLGK 180 (213)
T ss_pred EE-E----------------EECCC---CCCHHHHHHHHHHHHHcC--Cc----------eEEEecCCccchhHHHHcCC
Confidence 84 1 14664 455655565555554431 11 221111111
Q ss_pred cccCcccccCCCCHHHHHHHHHHHHhcCCCc
Q 003498 189 EYGPMEYEIGAPGRSYTRWAAKMAVGLGTGV 219 (815)
Q Consensus 189 Eyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~v 219 (815)
+|-. .......++.++++++++++.|+.+
T Consensus 181 ~y~~--~~~~~~~~~~l~~~~~~~~~~gl~~ 209 (213)
T PRK10076 181 TWSM--KEVPAPSSADVATMREMAERAGFQV 209 (213)
T ss_pred cCcc--CCCCCcCHHHHHHHHHHHHHcCCeE
Confidence 2211 1123478899999999999988876
No 188
>PRK11372 lysozyme inhibitor; Provisional
Probab=25.42 E-value=1.4e+02 Score=28.38 Aligned_cols=19 Identities=21% Similarity=0.111 Sum_probs=12.3
Q ss_pred cchhhHHHHHHHHHhcCCC
Q 003498 7 LGMCNVLLILLLGCSGLFA 25 (815)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~ 25 (815)
+.||.++++++++..+.++
T Consensus 1 ~~mk~ll~~~~~~lL~gCs 19 (109)
T PRK11372 1 MSMKKLLIICLPVLLTGCS 19 (109)
T ss_pred CchHHHHHHHHHHHHHHhc
Confidence 4688877766655555554
No 189
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=25.29 E-value=1.4e+02 Score=35.11 Aligned_cols=55 Identities=22% Similarity=0.369 Sum_probs=45.0
Q ss_pred eeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEe
Q 003498 54 IHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLR 120 (815)
Q Consensus 54 iHy~R~~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViLR 120 (815)
..|.+.|.+.-++.++++.+.|++.|+++..-|.. .++...++.|+++|+.|.+.
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~ 142 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVA 142 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEE
Confidence 34666677777889999999999999998876653 25888999999999988665
No 190
>PRK09267 flavodoxin FldA; Validated
Probab=25.25 E-value=3.5e+02 Score=26.73 Aligned_cols=74 Identities=8% Similarity=0.077 Sum_probs=48.2
Q ss_pred ECCeEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEE
Q 003498 42 INGKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVN 118 (815)
Q Consensus 42 idG~~~~l~sG~iHy~R~~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vi 118 (815)
++.-..++++...|+...++..|.+.+.+++...++-..+.+|= ......-.-.| ..-+..+-+++++.|..++
T Consensus 44 l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaifg-~g~~~~~~~~~--~~~~~~l~~~l~~~g~~~v 117 (169)
T PRK09267 44 FEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALFG-LGDQEDYAEYF--CDAMGTLYDIVEPRGATIV 117 (169)
T ss_pred HhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEEe-cCCCCcchHHH--HHHHHHHHHHHHHCCCEEE
Confidence 44556788999999878888999999998887777766666663 21111000111 1235667777888896654
No 191
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=25.14 E-value=1.4e+02 Score=32.89 Aligned_cols=59 Identities=22% Similarity=0.257 Sum_probs=42.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCC--CCc--eeeeccchhHHHHHHHHHHcCCEEEEec
Q 003498 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP--SPG--KYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (815)
Q Consensus 60 ~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp--~~G--~ydF~G~~dL~~fl~la~~~GL~ViLR~ 121 (815)
.++..++.++.+++.|.+.|-+|.-+..-.+ .++ .++- ..+.+.+++|++.|+.|.+..
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~---e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSE---EELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCH---HHHHHHHHHHHHcCCEEEEEe
Confidence 4677889999999999999999875422111 122 2332 378899999999999988763
No 192
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=25.02 E-value=2.3e+02 Score=32.36 Aligned_cols=52 Identities=19% Similarity=0.257 Sum_probs=36.0
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEe
Q 003498 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLR 120 (815)
Q Consensus 63 ~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViLR 120 (815)
.|...++.+++.|++.|..+...-.-... .+.+ -...+++.|+++||.|+.+
T Consensus 246 ~~~~~l~~i~a~~a~~i~P~~~~l~~~~~--~~~~----~~~~~v~~Ah~~GL~V~~W 297 (356)
T cd08560 246 TWSPSMDELKARGVNIIAPPIWMLVDPDE--NGKI----VPSEYAKAAKAAGLDIITW 297 (356)
T ss_pred cHHHHHHHHHhCCccEecCchhhcccccc--cccc----CCHHHHHHHHHcCCEEEEE
Confidence 48888999999999987765432222211 1112 2468899999999999976
No 193
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=24.97 E-value=7.8e+02 Score=25.77 Aligned_cols=51 Identities=16% Similarity=0.208 Sum_probs=37.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEE
Q 003498 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNL 119 (815)
Q Consensus 60 ~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViL 119 (815)
...-+++.+++++++|++.|+..- .+.+..+ ..++.++.++.++.||.+..
T Consensus 13 ~~~~l~~~l~~~~~~G~~gvEi~~--------~~~~~~~-~~~~~~l~~~l~~~gl~i~~ 63 (274)
T COG1082 13 GELPLEEILRKAAELGFDGVELSP--------GDLFPAD-YKELAELKELLADYGLEITS 63 (274)
T ss_pred CCCCHHHHHHHHHHhCCCeEecCC--------cccCCch-hhhHHHHHHHHHHcCcEEEe
Confidence 455688999999999999999865 1112111 11389999999999999775
No 194
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=24.47 E-value=1.5e+02 Score=32.31 Aligned_cols=49 Identities=29% Similarity=0.260 Sum_probs=37.5
Q ss_pred HHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 003498 68 IQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (815)
Q Consensus 68 l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~G 122 (815)
..++|++|++.|-+ .|..++-.|+-+ +..+.+=++.|.++||.+||++|
T Consensus 81 ~~mL~d~G~~~vii-----GHSERR~~~~E~-d~~i~~K~~aa~~~Gl~pIlCvG 129 (251)
T COG0149 81 AEMLKDLGAKYVLI-----GHSERRLYFGET-DELIAKKVKAAKEAGLTPILCVG 129 (251)
T ss_pred HHHHHHcCCCEEEE-----Cccccccccccc-hHHHHHHHHHHHHCCCeEEEEcC
Confidence 34789999998887 676665555543 34466778889999999999987
No 195
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=24.45 E-value=2.5e+02 Score=31.51 Aligned_cols=62 Identities=15% Similarity=0.082 Sum_probs=46.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccc----CCccCC------CCceee--------eccchhHHHHHHHHHHcCCEEEEec
Q 003498 60 SPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEP------SPGKYY--------FEGNYDLVKFIKLAKQAGLYVNLRI 121 (815)
Q Consensus 60 ~~e~W~d~l~k~Ka~GlN~I~tyvf----Wn~HEp------~~G~yd--------F~G~~dL~~fl~la~~~GL~ViLR~ 121 (815)
+.+...+.|+.|-..++|+...++- |.+.-+ ..|.+. |=-..|+.++++.|++.|+.||--+
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIPEi 95 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVPEI 95 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEEec
Confidence 7888999999999999999998874 544321 122221 1113599999999999999999764
No 196
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=24.43 E-value=66 Score=31.47 Aligned_cols=52 Identities=29% Similarity=0.508 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHcCCEEEEecCceeccccC-CCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhc
Q 003498 101 YDLVKFIKLAKQAGLYVNLRIGPYVCAEWN-FGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAE 171 (815)
Q Consensus 101 ~dL~~fl~la~~~GL~ViLR~GPyicaEw~-~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~ 171 (815)
.||..||++|++.|+.|++=+-| |++.|- +-|+| ++.-+.++++|-.+++++
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wydytG~~------------------~~~r~~~y~kI~~~~~~~ 88 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP-VNGKWYDYTGLS------------------KEMRQEYYKKIKYQLKSQ 88 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-----HHHHHHTT--------------------HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCceEEEecC-CcHHHHHHhCCC------------------HHHHHHHHHHHHHHHHHC
Confidence 49999999999999998877656 666663 22221 245567888888888843
No 197
>PLN02784 alpha-amylase
Probab=24.20 E-value=1.5e+02 Score=37.61 Aligned_cols=57 Identities=16% Similarity=0.141 Sum_probs=38.9
Q ss_pred HHHHHHHHHCCCCEEEEcccCCccCC---CCce-ee----eccchhHHHHHHHHHHcCCEEEEec
Q 003498 65 PDLIQKAKDGGLDVIQTYVFWNGHEP---SPGK-YY----FEGNYDLVKFIKLAKQAGLYVNLRI 121 (815)
Q Consensus 65 ~d~l~k~Ka~GlN~I~tyvfWn~HEp---~~G~-yd----F~G~~dL~~fl~la~~~GL~ViLR~ 121 (815)
.+.+..++++|+++|...=+.....+ .+.. |+ |....+|.++|+.|+++||+||+-+
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45677789999999997533222111 1111 22 3334799999999999999999874
No 198
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=24.15 E-value=2.9e+02 Score=30.05 Aligned_cols=109 Identities=17% Similarity=0.228 Sum_probs=66.2
Q ss_pred eEEEEEEeeCCCCCcc----cHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 003498 47 RILISGSIHYPRSSPE----MWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (815)
Q Consensus 47 ~~l~sG~iHy~R~~~e----~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~G 122 (815)
.+-+++..|+.+-|.. .=-++|++=.++|.+.+-|=.+ ||.+ .+.+|++.|++.|+.+=+.+|
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ~~----------fd~~---~~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQLF----------FDND---DYYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeeccc----------cCHH---HHHHHHHHHHHcCCCCCEecc
Confidence 4678888876653322 1124466666789999988443 3434 788999999999766444444
Q ss_pred --ceecc-------ccCCCCCCcccccC-CCeeeecCChhhHHHHHHHHHHHHHHHHh
Q 003498 123 --PYVCA-------EWNFGGFPVWLKYI-PGINFRTENGPFKAEMHKFTKKIVDMMKA 170 (815)
Q Consensus 123 --Pyica-------Ew~~GG~P~WL~~~-p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~ 170 (815)
|-... +|..-.+|.|+.+. .. ...+.+..+++--++..++++.+.+
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~~l~~--~~~~~~~~~~~gi~~~~~~~~~l~~ 247 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVKRLEK--YDDDPEEVRAVGIEYATDQCEDLIA 247 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 43322 35566678888761 11 1122234556666677777777763
No 199
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=23.98 E-value=2.9e+02 Score=25.56 Aligned_cols=72 Identities=21% Similarity=0.300 Sum_probs=42.2
Q ss_pred CCceEEEE-EEecCCCCcccccCCCcceEEecCc-c-eEEEEEECC---EEEEEEeccc--CCCe-eEEEeeeeccCCcc
Q 003498 472 ATDYLWYM-TDVKIDPSEGFLRSGNYPVLTVMSA-G-HALHVFVNG---QLAGTAYGSL--EFPK-LTFTEGVNMRAGIN 542 (815)
Q Consensus 472 ~sgYlwY~-T~v~~~~~~~~~~~g~~~~L~v~~~-~-d~~~vfVNg---~~vGs~~g~~--~~~~-~~~~~~v~l~~G~n 542 (815)
.-+|+-|. -.+. ..... ...+++.+. . -.+.++||| +.+++..-.. .-.. -+.+.+|.|.+|.|
T Consensus 30 ~G~~~~~~~Vd~~--~~g~y-----~~~~~~a~~~~~~~~~l~id~~~g~~~~~~~~~~tg~w~~~~~~~~~v~l~~G~h 102 (125)
T PF03422_consen 30 NGDWIEYNNVDVP--EAGTY-----TLTIRYANGGGGGTIELRIDGPDGTLIGTVSLPPTGGWDTWQTVSVSVKLPAGKH 102 (125)
T ss_dssp TTTEEEEEEEEES--SSEEE-----EEEEEEEESSSSEEEEEEETTTTSEEEEEEEEE-ESSTTEEEEEEEEEEEESEEE
T ss_pred CCCEEEEEEEeeC--CCceE-----EEEEEEECCCCCcEEEEEECCCCCcEEEEEEEcCCCCccccEEEEEEEeeCCCee
Confidence 34677777 4443 22210 123344332 2 488999999 8988875421 1112 23456778888999
Q ss_pred EEEEEEec
Q 003498 543 KIALLSIA 550 (815)
Q Consensus 543 ~L~lLven 550 (815)
+|.|....
T Consensus 103 ~i~l~~~~ 110 (125)
T PF03422_consen 103 TIYLVFNG 110 (125)
T ss_dssp EEEEEESS
T ss_pred EEEEEEEC
Confidence 99886544
No 200
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=23.91 E-value=1.1e+02 Score=32.63 Aligned_cols=60 Identities=12% Similarity=-0.072 Sum_probs=38.8
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 003498 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (815)
Q Consensus 62 e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~ 121 (815)
+..++.++.++++|..+|.+...+..-...+.+..-.-...|.++.++|++.|+.+.+.|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 446788899999999999874433211111112111112456778888999999999986
No 201
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=23.10 E-value=1e+02 Score=33.17 Aligned_cols=64 Identities=22% Similarity=0.235 Sum_probs=38.5
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcccCC-cc---CCCCceeee-ccchhHHHHHHHHHHcCCEEEEecC
Q 003498 59 SSPEMWPDLIQKAKDGGLDVIQTYVFWN-GH---EPSPGKYYF-EGNYDLVKFIKLAKQAGLYVNLRIG 122 (815)
Q Consensus 59 ~~~e~W~d~l~k~Ka~GlN~I~tyvfWn-~H---Ep~~G~ydF-~G~~dL~~fl~la~~~GL~ViLR~G 122 (815)
.+.+.|++..+.+|+.|+..+.|.+--. +. +...-.|-- |+...=..+|+.+++.|+-|||-.|
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG 121 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTG 121 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-T
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECC
Confidence 5889999999999999999999954311 11 111112221 3434445689999999999999876
No 202
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=23.00 E-value=1.6e+02 Score=32.69 Aligned_cols=88 Identities=18% Similarity=0.306 Sum_probs=57.8
Q ss_pred HHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCE--EEEecCceec-------cccCCCCCCcc
Q 003498 67 LIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLY--VNLRIGPYVC-------AEWNFGGFPVW 137 (815)
Q Consensus 67 ~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~--ViLR~GPyic-------aEw~~GG~P~W 137 (815)
.|++-.++|.+.+-|=.| ||.+ .+.+|++.|++.|+. |+..+-|-.. ++...-.+|.|
T Consensus 168 ~Lk~K~~aGA~~~iTQ~~----------Fd~~---~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~ 234 (296)
T PRK09432 168 NLKRKVDAGANRAITQFF----------FDVE---SYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAW 234 (296)
T ss_pred HHHHHHHcCCCeeecccc----------cchH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHH
Confidence 455555688888888433 3444 789999999999955 5555545321 57777789999
Q ss_pred cccC-CCeeeecCC-hhhHHHHHHHHHHHHHHHHh
Q 003498 138 LKYI-PGINFRTEN-GPFKAEMHKFTKKIVDMMKA 170 (815)
Q Consensus 138 L~~~-p~i~~Rt~d-~~y~~~~~~~~~~i~~~l~~ 170 (815)
|.+. .. . .+| +..+++--.+..++++.+.+
T Consensus 235 l~~~l~~--~-~d~~~~~~~~Gi~~a~e~i~~L~~ 266 (296)
T PRK09432 235 MAKMFDG--L-DDDAETRKLVGASIAMDMVKILSR 266 (296)
T ss_pred HHHHHHh--c-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9762 11 1 133 34556666777788877774
No 203
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=22.90 E-value=1.8e+02 Score=28.40 Aligned_cols=92 Identities=14% Similarity=0.238 Sum_probs=46.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeee-ccchhHHHHHHHHHHcCCEEEEecCceeccccCCCCCCccc
Q 003498 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYF-EGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWL 138 (815)
Q Consensus 60 ~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF-~G~~dL~~fl~la~~~GL~ViLR~GPyicaEw~~GG~P~WL 138 (815)
.+.+.++.++.++++|+..+-+|.....+. ......+ .|..|-..-+..|++.|+. -|-|.++
T Consensus 36 ~k~Lt~~e~~~i~~~Gl~i~pIyq~~~~~~-~~~~~~~~~G~~dA~~A~~~A~~lG~p---------------~gt~IYf 99 (136)
T PF08924_consen 36 QKNLTAGEVQDIRAAGLRIFPIYQGGGRET-SDFTYGYAQGVADARDAVAAARALGFP---------------AGTPIYF 99 (136)
T ss_dssp --B--HHHHHHHHHTT-EEEEEE---------S-B--HHHHHHHHHHHHHHHHHTT-----------------SS-EEEE
T ss_pred cCCCCHHHHHHHHHCCCEEEEEEecccccc-cccccHHHHHHHHHHHHHHHHHHcCCC---------------CCCEEEE
Confidence 468899999999999999999998873221 1111222 2678899999999999984 1333444
Q ss_pred ccCCCeeeecCChhhHHHHHHHHHHHHHHHHhc
Q 003498 139 KYIPGINFRTENGPFKAEMHKFTKKIVDMMKAE 171 (815)
Q Consensus 139 ~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~ 171 (815)
--+ +-..+..+...+..|++.+.+.|...
T Consensus 100 avD----~d~~~~~~~~~i~~Y~~g~~~~l~~~ 128 (136)
T PF08924_consen 100 AVD----YDATDAECDSAILPYFRGWNSALGAS 128 (136)
T ss_dssp E------TS-B-HH-------HHHHHHHHHGGG
T ss_pred Eee----cCCCchhhhhHHHHHHHHHHHHHhhC
Confidence 322 12246677788888999888888843
No 204
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=22.87 E-value=1.9e+02 Score=31.51 Aligned_cols=49 Identities=24% Similarity=0.302 Sum_probs=40.1
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEE
Q 003498 59 SSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNL 119 (815)
Q Consensus 59 ~~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViL 119 (815)
.|.+.=++.++++.+.|++.|+++++.|- + ..+...++.|+++|+.|..
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~---------~---~~~~~~i~~ak~~G~~v~~ 136 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALND---------V---RNLEVAIKAVKKAGKHVEG 136 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCCh---------H---HHHHHHHHHHHHCCCeEEE
Confidence 34555688999999999999999887665 1 3788999999999998775
No 205
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=22.82 E-value=1.7e+02 Score=32.32 Aligned_cols=60 Identities=20% Similarity=0.197 Sum_probs=47.0
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEccc----CCccCC----------------CCceeeeccchhHHHHHHHHHHcCCEEE
Q 003498 59 SSPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEP----------------SPGKYYFEGNYDLVKFIKLAKQAGLYVN 118 (815)
Q Consensus 59 ~~~e~W~d~l~k~Ka~GlN~I~tyvf----Wn~HEp----------------~~G~ydF~G~~dL~~fl~la~~~GL~Vi 118 (815)
.+.+...+.|+.|-..++|+++.++- |.+--+ ..|.|.- .|+.++++.|++.|+.||
T Consensus 13 ~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~---~di~elv~yA~~rgI~vi 89 (303)
T cd02742 13 LSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTY---AQLKDIIEYAAARGIEVI 89 (303)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECH---HHHHHHHHHHHHcCCEEE
Confidence 36788899999999999999999877 754311 1233443 499999999999999999
Q ss_pred Eec
Q 003498 119 LRI 121 (815)
Q Consensus 119 LR~ 121 (815)
--+
T Consensus 90 PEi 92 (303)
T cd02742 90 PEI 92 (303)
T ss_pred Eec
Confidence 764
No 206
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=22.27 E-value=4.7e+02 Score=26.40 Aligned_cols=48 Identities=19% Similarity=0.283 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhccccccCCCceEEecccccccCcccccCCCCHHHHHHHHHHH
Q 003498 157 MHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIGAPGRSYTRWAAKMA 212 (815)
Q Consensus 157 ~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~Y~~~l~~~~ 212 (815)
+..-+.+++..++ ..+.++|+| .||.|.-.-.+.+..+.|.+.+-.+-
T Consensus 101 ~~~~i~~l~~~l~------~~~~~~viV--snEvG~g~vp~~~~~r~f~d~lG~ln 148 (169)
T cd00544 101 IADEIDALLAAVR------NKPGTLILV--SNEVGLGVVPENALGRRFRDELGRLN 148 (169)
T ss_pred HHHHHHHHHHHHH------cCCCcEEEE--ECCcCCCCCCCCHHHHHHHHHHHHHH
Confidence 4445566666666 346688887 58998643345567889987765543
No 207
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=21.97 E-value=2.8e+02 Score=26.15 Aligned_cols=63 Identities=13% Similarity=0.301 Sum_probs=0.0
Q ss_pred EEEEEEecCCCCcccccCCCcceEEecCcceEEEEEECCEEEEEEecccCCCeeEEEeeeeccCC-ccEEEEE
Q 003498 476 LWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAG-INKIALL 547 (815)
Q Consensus 476 lwY~T~v~~~~~~~~~~~g~~~~L~v~~~~d~~~vfVNg~~vGs~~g~~~~~~~~~~~~v~l~~G-~n~L~lL 547 (815)
+.+++.|..+.+..+ ++.+ ...|.+.+||||+.+-...+... ........+.|.+| ...|.|.
T Consensus 46 ~~~~g~i~~~~~G~y-------~f~~-~~~~~~~l~Idg~~vid~~~~~~-~~~~~~~~v~l~~g~~~~i~v~ 109 (136)
T smart00758 46 VRWTGYLKPPEDGEY-------TFSI-TSDDGARLWIDGKLVIDNWGKHE-ARPSTSSTLYLLAGGTYPIRIE 109 (136)
T ss_pred EEEEEEEECCCCccE-------EEEE-EcCCcEEEEECCcEEEcCCccCC-CccccceeEEEeCCcEEEEEEE
No 208
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=21.74 E-value=3.1e+02 Score=33.53 Aligned_cols=109 Identities=16% Similarity=0.189 Sum_probs=72.9
Q ss_pred eEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCce
Q 003498 45 KRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPY 124 (815)
Q Consensus 45 ~~~~l~sG~iHy~R~~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~GPy 124 (815)
++-+.+++..|+.+.+.+.=-++|.+-.++|.+-+-|=.|++. + .+.+|++.+++.++.+|.-+-|.
T Consensus 461 ~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~fd~----------~---~~~~~~~~~~~~~vpIi~GImPi 527 (612)
T PRK08645 461 KTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPVYDE----------E---LIEELLEATKHLGVPIFIGIMPL 527 (612)
T ss_pred CCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEecccCCH----------H---HHHHHHHHHhcCCCCEEEEeeec
Confidence 4557888888866554443334566666899999999666544 2 68888888887788888877775
Q ss_pred ecc--------ccCCCCCCcccccC-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003498 125 VCA--------EWNFGGFPVWLKYI-PGINFRTENGPFKAEMHKFTKKIVDMMK 169 (815)
Q Consensus 125 ica--------Ew~~GG~P~WL~~~-p~i~~Rt~d~~y~~~~~~~~~~i~~~l~ 169 (815)
... +|..-=+|.|+.+. .. .. +.+.++++--++..++++.++
T Consensus 528 ~s~k~~~~~~~~~~Gv~vP~~l~~~l~~--~~-d~~~~~~~gv~~a~e~i~~l~ 578 (612)
T PRK08645 528 VSYRNAEFLHNEVPGITLPEEIRERMRA--VE-DKEEAREEGVAIARELIDAAR 578 (612)
T ss_pred CCHHHHHHHHhCCCCCCCCHHHHHHHHh--cC-CchHHHHHHHHHHHHHHHHHH
Confidence 443 24444468888761 11 11 334667777777777777776
No 209
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=21.54 E-value=1.8e+02 Score=30.45 Aligned_cols=67 Identities=18% Similarity=0.183 Sum_probs=38.6
Q ss_pred CCCCCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceee-eccchhHHHHHHHHHH--cCCEEEEecCceecc
Q 003498 56 YPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYY-FEGNYDLVKFIKLAKQ--AGLYVNLRIGPYVCA 127 (815)
Q Consensus 56 y~R~~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~yd-F~G~~dL~~fl~la~~--~GL~ViLR~GPyica 127 (815)
.-|+..++--..-+.+|+.|+.++-.---=..|-...=-|- -.| .+ =+.+.+ ..-++|+||||..|-
T Consensus 103 fykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~sSrFlY~k~KG--Ev---E~~v~eL~F~~~~i~RPG~ll~~ 172 (238)
T KOG4039|consen 103 FYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADPSSRFLYMKMKG--EV---ERDVIELDFKHIIILRPGPLLGE 172 (238)
T ss_pred eEeechHHHHHHHHHHHhCCCeEEEEEeccCCCcccceeeeeccc--hh---hhhhhhccccEEEEecCcceecc
Confidence 44788889888999999999987765322222322211111 111 11 111222 234699999998774
No 210
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=21.39 E-value=5.3e+02 Score=28.48 Aligned_cols=87 Identities=20% Similarity=0.175 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHHcCCEEEEecCceeccccCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCc
Q 003498 101 YDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGP 180 (815)
Q Consensus 101 ~dL~~fl~la~~~GL~ViLR~GPyicaEw~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGp 180 (815)
..+.+.|+.+|+.|++|+|-+|- |. |. .. ..++ +..++|.+.|++.++++.+
T Consensus 60 ~~~~~~i~~~q~~G~KVllSiGG-----~~-~~----------~~--~~~~---~~~~~fa~sl~~~~~~~g~------- 111 (312)
T cd02871 60 AEFKADIKALQAKGKKVLISIGG-----AN-GH----------VD--LNHT---AQEDNFVDSIVAIIKEYGF------- 111 (312)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeC-----CC-Cc----------cc--cCCH---HHHHHHHHHHHHHHHHhCC-------
Confidence 35788899999999999999872 11 10 00 1122 3456788888888886643
Q ss_pred eEEecccccccCcccccCCCCHHHHHHHHHHHHhcC
Q 003498 181 IILSQIENEYGPMEYEIGAPGRSYTRWAAKMAVGLG 216 (815)
Q Consensus 181 II~~QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g 216 (815)
=++.|+=|+........+....|++.|+++-...+
T Consensus 112 -DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~~~~ 146 (312)
T cd02871 112 -DGLDIDLESGSNPLNATPVITNLISALKQLKDHYG 146 (312)
T ss_pred -CeEEEecccCCccCCcHHHHHHHHHHHHHHHHHcC
Confidence 35777888765310000112456666666554444
No 211
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=20.88 E-value=1.3e+02 Score=32.35 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=32.0
Q ss_pred EECCeEeEEEEEEeeCCCC-CcccHHHHHHHHHHCCCCEEEE
Q 003498 41 AINGKRRILISGSIHYPRS-SPEMWPDLIQKAKDGGLDVIQT 81 (815)
Q Consensus 41 ~idG~~~~l~sG~iHy~R~-~~e~W~d~l~k~Ka~GlN~I~t 81 (815)
.+.|+++..++|..|+-.. ...+-+--++.||++|+..|=.
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii~ 88 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLIL 88 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEEE
Confidence 4689999999999997554 3344477899999999976643
No 212
>PLN02389 biotin synthase
Probab=20.79 E-value=1.3e+02 Score=34.63 Aligned_cols=50 Identities=14% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCEEEEccc--CCccCCCCceeeeccchhHHHHHHHHHHcCCEE
Q 003498 65 PDLIQKAKDGGLDVIQTYVF--WNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYV 117 (815)
Q Consensus 65 ~d~l~k~Ka~GlN~I~tyvf--Wn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~V 117 (815)
++.++++|++|++.+..-+- -..+.-.-..-+|+ +..+.++.|++.||.|
T Consensus 178 ~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e---~rl~ti~~a~~~Gi~v 229 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYD---DRLETLEAVREAGISV 229 (379)
T ss_pred HHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHH---HHHHHHHHHHHcCCeE
No 213
>PRK13791 lysozyme inhibitor; Provisional
Probab=20.71 E-value=1.8e+02 Score=27.92 Aligned_cols=19 Identities=11% Similarity=0.043 Sum_probs=14.8
Q ss_pred cchhhHHHHHHHHHhcCCC
Q 003498 7 LGMCNVLLILLLGCSGLFA 25 (815)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~ 25 (815)
+.||++++++++++.+.++
T Consensus 2 ~~mk~~~~~~~~~~ls~~~ 20 (113)
T PRK13791 2 MKRKLIPFTLFLAALSAST 20 (113)
T ss_pred chHHHHHHHHHHHHHhhhh
Confidence 5789988888887777765
No 214
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=20.61 E-value=71 Score=34.43 Aligned_cols=50 Identities=24% Similarity=0.221 Sum_probs=38.1
Q ss_pred HHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 003498 67 LIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (815)
Q Consensus 67 ~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~G 122 (815)
...++|++|++.|-+ .|..++--|. +.+..+.+=++.|.++||.+|+++|
T Consensus 76 S~~mL~d~G~~~vii-----GHSERR~~f~-Etd~~i~~Kv~~al~~gl~pIvCvG 125 (244)
T PF00121_consen 76 SAEMLKDLGCKYVII-----GHSERRQYFG-ETDEIINKKVKAALENGLTPIVCVG 125 (244)
T ss_dssp BHHHHHHTTESEEEE-----SCHHHHHHST--BHHHHHHHHHHHHHTT-EEEEEES
T ss_pred HHHHHHHhhCCEEEe-----ccccccCccc-cccHHHHHHHHHHHHCCCEEEEEec
Confidence 346899999988887 5655554444 4467888999999999999999987
No 215
>PRK09739 hypothetical protein; Provisional
Probab=20.52 E-value=2.8e+02 Score=28.32 Aligned_cols=75 Identities=11% Similarity=0.073 Sum_probs=45.1
Q ss_pred eEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCc-cCCCCceee---ec-----cchhHHHHHHHHHHcCC
Q 003498 45 KRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNG-HEPSPGKYY---FE-----GNYDLVKFIKLAKQAGL 115 (815)
Q Consensus 45 ~~~~l~sG~iHy~R~~~e~W~d~l~k~Ka~GlN~I~tyvfWn~-HEp~~G~yd---F~-----G~~dL~~fl~la~~~GL 115 (815)
.+.+++.|+.+..+.+...=+..++.+++.|.++...- .... ..|.-+.-+ |. -..|+++.++...+++.
T Consensus 4 mkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~d-L~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~ 82 (199)
T PRK09739 4 MRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELD-LYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEHDA 82 (199)
T ss_pred ceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEE-hhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhCCE
Confidence 45778888876655566666777788888885433222 2221 112211111 11 12478999999999999
Q ss_pred EEEEe
Q 003498 116 YVNLR 120 (815)
Q Consensus 116 ~ViLR 120 (815)
.|+.=
T Consensus 83 iV~~~ 87 (199)
T PRK09739 83 LVFVF 87 (199)
T ss_pred EEEEC
Confidence 88863
No 216
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=20.48 E-value=63 Score=33.65 Aligned_cols=78 Identities=24% Similarity=0.391 Sum_probs=51.0
Q ss_pred CCeEeE-EEEEEeeC-CCCCcccHHHHHHHHHHCCCCEEEEcccCCccC--------CCCc----eeeeccchhHHHHHH
Q 003498 43 NGKRRI-LISGSIHY-PRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHE--------PSPG----KYYFEGNYDLVKFIK 108 (815)
Q Consensus 43 dG~~~~-l~sG~iHy-~R~~~e~W~d~l~k~Ka~GlN~I~tyvfWn~HE--------p~~G----~ydF~G~~dL~~fl~ 108 (815)
.+++++ +.-|+-+. -|+|.|.|.+.++++++-| ..+.++|.-.| -.++ ..++.|..+|..++.
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~---~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~a 179 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERLKERG---YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAA 179 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT----EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHH
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhC---ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHH
Confidence 344444 44444443 3479999999999999998 45567787666 1222 588999999999999
Q ss_pred HHHHcCCEEEEecCc
Q 003498 109 LAKQAGLYVNLRIGP 123 (815)
Q Consensus 109 la~~~GL~ViLR~GP 123 (815)
+.+...+.|-.-.||
T Consensus 180 li~~a~~~I~~Dtg~ 194 (247)
T PF01075_consen 180 LISRADLVIGNDTGP 194 (247)
T ss_dssp HHHTSSEEEEESSHH
T ss_pred HHhcCCEEEecCChH
Confidence 999999888777665
No 217
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=20.25 E-value=5.8e+02 Score=29.54 Aligned_cols=85 Identities=18% Similarity=0.114 Sum_probs=47.0
Q ss_pred EeEEEEEEeeCCCCCcccH----HHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 003498 46 RRILISGSIHYPRSSPEMW----PDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (815)
Q Consensus 46 ~~~l~sG~iHy~R~~~e~W----~d~l~k~Ka~GlN~I~tyvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~ViLR~ 121 (815)
..++++|.+.-...++... .+.++++++.++. +|+.+.=|.. .. .+....++.++.|++|+-.+
T Consensus 41 D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~---v~~I~GNHD~-------~~--~l~~~~~~l~~~gi~vl~~~ 108 (407)
T PRK10966 41 DAIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQ---LVVLAGNHDS-------VA--TLNESRDLLAFLNTTVIASA 108 (407)
T ss_pred CEEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCc---EEEEcCCCCC-------hh--hhhhHHHHHHHCCcEEEecc
Confidence 3577888885433444333 3456677777654 4544544543 22 24455677788999988543
Q ss_pred ------CceeccccCCCCCCcccccCCC
Q 003498 122 ------GPYVCAEWNFGGFPVWLKYIPG 143 (815)
Q Consensus 122 ------GPyicaEw~~GG~P~WL~~~p~ 143 (815)
.|..- +-..|...+|+.-.|=
T Consensus 109 ~~~~~~~~v~l-~~~~g~~~~~i~~lPy 135 (407)
T PRK10966 109 SDDLGHQVIIL-PRRDGTPGAVLCAIPF 135 (407)
T ss_pred cccCCcceEEE-ecCCCCeeeEEEECCC
Confidence 22211 2234545566665553
No 218
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=20.14 E-value=1.8e+02 Score=36.63 Aligned_cols=60 Identities=22% Similarity=0.314 Sum_probs=43.7
Q ss_pred HHHHHHHHHHCCCC--EEEEcccCCccCCCCceeeecc----chhHHHHHHHHHHcCCEEEEecCceeccc
Q 003498 64 WPDLIQKAKDGGLD--VIQTYVFWNGHEPSPGKYYFEG----NYDLVKFIKLAKQAGLYVNLRIGPYVCAE 128 (815)
Q Consensus 64 W~d~l~k~Ka~GlN--~I~tyvfWn~HEp~~G~ydF~G----~~dL~~fl~la~~~GL~ViLR~GPyicaE 128 (815)
-+++.+.++++|+. ++-+=+.|. ++.=||+= -.++..|++..++.|+++++-+=|+|..-
T Consensus 313 ~~dvv~~~~~agiPld~~~~DiDyM-----d~ykDFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~ 378 (805)
T KOG1065|consen 313 VRDVVENYRAAGIPLDVIVIDIDYM-----DGYKDFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTN 378 (805)
T ss_pred HHHHHHHHHHcCCCcceeeeehhhh-----hcccceeeccccCcchHHHHHHHHhCCCeEEEEeCCccccC
Confidence 37899999999997 555555554 22233332 13689999999999999999887777543
No 219
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=20.09 E-value=2.6e+02 Score=32.13 Aligned_cols=66 Identities=21% Similarity=0.266 Sum_probs=44.4
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEccc--CCccCCCCceeeeccchhHHHHHHHHHHcCCE-EEEecCceeccccCCCCCC
Q 003498 59 SSPEMWPDLIQKAKDGGLDVIQTYVF--WNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLY-VNLRIGPYVCAEWNFGGFP 135 (815)
Q Consensus 59 ~~~e~W~d~l~k~Ka~GlN~I~tyvf--Wn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~-ViLR~GPyicaEw~~GG~P 135 (815)
++++.+++.++.+|+.|++.+=..++ .+...++. |.- ...+..++++++.+.|+. -+|-+| ||||
T Consensus 147 i~~~~~~~~l~~~~~~~l~~~Gih~HiGS~~~~~~~--~~~-a~~~~~~~~~~~~~~g~~l~~ldiG---------GGf~ 214 (394)
T cd06831 147 TTLKNCRHLLECAKELDVQIVGVKFHVSSSCKEYQT--YVH-ALSDARCVFDMAEEFGFKMNMLDIG---------GGFT 214 (394)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEEEECCCCCCCHHH--HHH-HHHHHHHHHHHHHHCCCCCCEEEeC---------CCcC
Confidence 57888999999999999998665444 54443332 210 011346678888888875 447777 8997
Q ss_pred c
Q 003498 136 V 136 (815)
Q Consensus 136 ~ 136 (815)
.
T Consensus 215 ~ 215 (394)
T cd06831 215 G 215 (394)
T ss_pred C
Confidence 3
Done!