Query 003500
Match_columns 815
No_of_seqs 305 out of 866
Neff 5.8
Searched_HMMs 29240
Date Tue Mar 26 18:14:07 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003500.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1549-1552//hhsearch_pdb/003500hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cc1_A BH1870 protein, putativ 1.0 1 1 378.6 24.9 383 238-696 11-433 (433)
2 3hg3_A Alpha-galactosidase A; 1.0 1 1 323.0 26.6 343 238-697 8-391 (404)
3 1zy9_A Alpha-galactosidase; TM 1.0 1 1 319.5 32.1 384 157-615 122-529 (564)
4 1szn_A Alpha-galactosidase; (b 1.0 1 1 315.3 27.6 354 238-696 11-414 (417)
5 3a21_A Putative secreted alpha 1.0 1 1 314.9 28.1 356 236-697 9-388 (614)
6 1uas_A Alpha-galactosidase; TI 1.0 1 1 314.8 29.6 332 238-695 8-362 (362)
7 3lrk_A Alpha-galactosidase 1; 1.0 1 1 310.5 30.5 292 238-615 29-364 (479)
8 3a5v_A Alpha-galactosidase; be 1.0 1 1 308.6 32.1 351 238-696 8-394 (397)
9 4do4_A Alpha-N-acetylgalactosa 1.0 1 1 303.9 25.7 345 239-698 9-389 (400)
10 4fnq_A Alpha-galactosidase AGA 1.0 1 1 264.8 34.1 394 155-615 245-670 (729)
No 1
>3cc1_A BH1870 protein, putative alpha-N-acetylgalactosaminidase; structural genomic center for structural genomics, JCSG; HET: MSE PGE PG4 P33; 2.00A {Bacillus halodurans c-125}
Probab=1.00 E-value=1 Score=378.59 Aligned_cols=383 Identities=15% Similarity=0.157 Sum_probs=253.6
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHH----HHCCCCCCEEEEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCC-
Q ss_conf 3444323432321236988899999987----82999981899816557556999854201210110111335798668-
Q 003500 238 LDWFGWCTWDAFYTDVTAEGVDEGLKSL----SAGGTPPKFLIIDDGWQQIENKPKEESNCIVQEGAQFASRLTGIKEN- 312 (815)
Q Consensus 238 ld~lGWCTWdafy~~vte~~I~~~l~~L----~~~Gi~~~~vIIDDGWQ~~~~~~~~~~~~~~~~~~~~~~rL~~~~~n- 312 (815)
..+||||||++||+++||++|++.++.+ ++.|+. ||+||||||..+++.. +... ....-...+++|.++
T Consensus 11 ~pp~gwnsW~~~~~~i~e~~i~~~ad~~~~gl~~~G~~--~~~iDDgW~~~~~~~~---~y~~-~~~~~~d~~G~~~~~~ 84 (433)
T 3cc1_A 11 TPPMGWNSWDCYGASVTEEEVLGNAEYMANHLKKYGWE--YIVVDIQWYEPTANSS---AYNP-FAPLCMDEYGRLLPAT 84 (433)
T ss_dssp CCCEEEESHHHHTTCCCHHHHHHHHHHHHHHTGGGTCC--EEEECSCTTCCCTTST---TCCT-TSCSCBCTTSCBCCCT
T ss_pred CCCEEEECHHHHCCCCCHHHHHHHHHHHHHCCHHHCCE--EEEECCCCCCCCCCCC---CCCC-CCCCCCCCCCCEEECC
T ss_conf 99879988566187579999999999998154631975--9998887577888665---4454-5545627889886787
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCC-CCCCCC-CCCCCCCCCCCCCCCEEC
Q ss_conf 745543458767889599999998409983798874013665776789766333-333223-557899987888960311
Q 003500 313 SKFQKKCQNSEQVSGLKHVVDESKQNHNVKYVYVWHALAGYWGGVKPAADGMEH-YDTALA-YPVTSPGVMGNQPDIVMD 390 (815)
Q Consensus 313 ~KFp~~~~~~~~p~GLk~lv~~Ik~~~Glk~vgvWHal~GYWgGI~P~~~~~~~-y~~~~~-~p~~spG~~~~~pd~a~d 390 (815)
.|||+. .-+.||++++++||+ +||| +|||..+.-.+..++++++.... |..+.+ .+... +. ..+.
T Consensus 85 ~kFP~~----~~~~Gl~~l~~~ih~-~Glk-~Giw~~p~i~~~~v~~~s~~~~~~~~~~di~~~~~~--~~-~~~~---- 151 (433)
T 3cc1_A 85 NRFPSA----KNGAGFKPLSDAIHD-LGLK-FGIHIMRGIPRQAVYENSPVLGSTKTAREIAHTNSI--CP-WNTD---- 151 (433)
T ss_dssp TTCGGG----TTTTTTHHHHHHHHH-TTCE-EEEEEESSEEHHHHHHTCBCTTSSCBHHHHEETTCC--BT-TBTT----
T ss_pred CCCCCC----CCCCCHHHHHHHHHH-CCCE-EEEEECCCCCHHCCCCCCCCCCCCCEECCCCCCCCC--CC-CCCC----
T ss_conf 668776----667898999999998-6984-589957877201037898544665311001467766--67-7887----
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 44325567559788999999999999851997999825540210169999800289999999999998309999389512
Q 003500 391 SLAVHGLGLVHPKKVFNFYNELHAYLASCGVDGVKVDVQNIIETLGAGHGGRVSLTRSYHQALEASIARNFPDNGCISCM 470 (815)
Q Consensus 391 ~~~~~G~glv~p~~a~~fy~~~~~~Las~GVD~VKvD~q~~l~~l~~~~~grv~l~~ay~~AL~~s~~r~f~g~~iI~CM 470 (815)
..++++.+|+ ++.||+.++++|++|||||||+|+|+.. .+. ++ ..+..++|++||+++ +++|++|+
T Consensus 152 ---~~~lD~~~p~-~~~~~~~~~~~l~~~GvDyvK~D~~~~~-~~~-~~--~~~~~~~~~~aL~~~------gr~i~~sl 217 (433)
T 3cc1_A 152 ---MYGVDPTKEG-AQSYYNSLFELYAQWGVDFVKVDDIAAS-RLY-DT--HLEEIKMIQRAIQAC------GRPMVLSL 217 (433)
T ss_dssp ---EEEECTTSTT-HHHHHHHHHHHHHHTTCCEEEEESCSCT-TSS-CC--CHHHHHHHHHHHHHS------SSCCEEEC
T ss_pred ---CEEECCCCHH-HHHHHHHHHHHHHHCCCCEEEECCCCCC-CCC-CC--CHHHHHHHHHHHHHC------CCCEEEEE
T ss_conf ---3432589889-9999999999999729988986786665-678-53--279999999999862------99879993
Q ss_pred CCCCCC----CCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-----------------
Q ss_conf 678988----53455557487148658789664146888766644210589789985356788-----------------
Q 003500 471 CHNTDG----IYSSKQTAVIRASDDYYPRDPASHTIHISSVAYNTLFLGEFMQPDWDMFHSLH----------------- 529 (815)
Q Consensus 471 s~~~~~----l~~~~~~~~~R~SDDf~p~~p~s~~~Hi~~~a~nsl~~g~~~~PDwDMF~s~h----------------- 529 (815)
|+++.. .+..+.+++||+|+|++|.|+..... +..++.++.+.++++|||+|||+++|
T Consensus 218 c~g~~~~~~~~~~~~~~n~wR~s~D~~~~w~~~~~~-~~~~~~~~~~~~~g~~nD~Dml~vg~~g~~~~~~~~~~~~~~l 296 (433)
T 3cc1_A 218 SPGPAPIKYAHHFKTNANMWRITDDFWDDWSLLYQM-FERCEVWEKHIGTGHWPDCGMLPLGHIGIRSVDGPGGDRWTRF 296 (433)
T ss_dssp CCSBSSEESCSSSCCTTGGGCCEECCCSCHHHHHHH-HHHHHHHHHSCCCSCCCBCCCBCCSEECTTCSSSSSSSEECSS
T ss_pred CCCCCCHHHHHHHHHHCCEEEECCCCCCCHHHHHHH-HHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 378777456666652076798625864448999999-9999888862599726770785046766445455565556789
Q ss_pred --HHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHC-------CCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf --13789999988339827920699999388773220-------899945511799987753323476889852389984
Q 003500 530 --PAAEYHGAARAVGGCAIYVSDKPGNHNFDLLRKLV-------LPDGSVLRAQLPGRPTRDCLFADPARDGTSLLKVWN 600 (815)
Q Consensus 530 --~~a~~HaaaraisGgPvyiSD~pg~hd~~lL~~Lv-------~pdG~ilR~~~pg~pt~d~lf~dp~~d~~~lLki~n 600 (815)
.+.++|+++|||+++|||+||.+.+.+-+-++-|. .+||...|+ ++. ++ -+.||.
T Consensus 297 t~~E~rt~~alwai~~spL~ig~dl~~~~~~~~~lL~N~eviavnqdg~~~~~----------v~~----~~--~~~vw~ 360 (433)
T 3cc1_A 297 TKDEQLTMMNLWAICHSPLMFGGELRDNDEWTLSLLTNEGILSINQKSVLNRF----------VYR----EE--DKVAWA 360 (433)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECSCGGGCCHHHHHHHCCHHHHHHHHHCEEEEE----------EEE----ET--TEEEEE
T ss_pred CHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHCCHHHEEECCCCCCCEE----------EEE----CC--CCEEEE
T ss_conf 99999999999998569558617613299999977559665120577857524----------574----59--818999
Q ss_pred EC--CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCEEEEEECCCE-EEECCCCCE
Q ss_conf 32--786137998604896100012212368999603565532651035654078988858999913555-996699980
Q 003500 601 VN--KCSGVVGVFNCQGAGWCKITKKTRIHDESPGTLTASVRVTDVENMAQIAGAGWNGDAIVYAHRSGE-VVRLPKGAS 677 (815)
Q Consensus 601 ~~--~~~gvig~FN~~ga~w~~~~~~~~~~~~~~~~~s~~v~~~D~~~~~~~~~~~~~~~~vvy~~~sg~-~~~l~~~~~ 677 (815)
.. .+.-+|++||..... .+-.+..+++. ..+.|.|+.--+++ +.....+..
T Consensus 361 ~~l~~g~~~val~N~~~~~-----------------~~~~~~~~~lg---------l~~~~~v~Dlw~~~~~g~~~~~~~ 414 (433)
T 3cc1_A 361 ANGRNGEAYVALFNLHDQQ-----------------KTLQFRLDMVG---------IMETVQLFNVWDRSFLQSLAPSES 414 (433)
T ss_dssp EECSSSCEEEEEEECSSSC-----------------EEEEECGGGTT---------CCSCEEEEETTTTEEEEEECTTCC
T ss_pred EECCCCCEEEEEEECCCCC-----------------EEEEEEHHHCC---------CCCCEEEEECCCCCCCCCCCCCCE
T ss_conf 9979998999999689997-----------------78998999939---------998618998878973442147745
Q ss_pred EEEEECCCCEEEEEEEEEE
Q ss_conf 7699427837999985642
Q 003500 678 VPVTLKVLEYELFHFCPLK 696 (815)
Q Consensus 678 ~~v~L~~~~~ei~t~~Pv~ 696 (815)
++++|++.++.+|.+.|.+
T Consensus 415 ~~~~v~~hg~~l~~l~~~~ 433 (433)
T 3cc1_A 415 FQIELKPHQSMMLKLSPDR 433 (433)
T ss_dssp EEEEECTTCEEEEEEEECC
T ss_pred EEEEECCCCEEEEEEEECC
T ss_conf 9999999808999998079
No 2
>3hg3_A Alpha-galactosidase A; glycoprotein, carbohydrate-binding protein, glycosidase, Lys enzyme, (beta/alpha)8 barrel, disease mutation; HET: NAG BMA MAN GLA GLC 2PE; 1.90A {Homo sapiens} PDB: 3tv8_A* 3lx9_A* 3lxa_A* 3lxb_A* 3lxc_A* 3s5z_A* 1r47_A* 1r46_A* 3gxn_A* 3gxt_A* 3hg2_A* 3hg4_A* 3hg5_A* 3gxp_A* 3s5y_A*
Probab=1.00 E-value=1 Score=322.96 Aligned_cols=343 Identities=15% Similarity=0.143 Sum_probs=229.3
Q ss_pred CCCCCCCCCCCCCCC----------CCHHHHHHHHHHHHHCCCC---CCEEEEECCCCCCCCCCCCCCCHHHCCCCCCCC
Q ss_conf 344432343232123----------6988899999987829999---818998165575569998542012101101113
Q 003500 238 LDWFGWCTWDAFYTD----------VTAEGVDEGLKSLSAGGTP---PKFLIIDDGWQQIENKPKEESNCIVQEGAQFAS 304 (815)
Q Consensus 238 ld~lGWCTWdafy~~----------vte~~I~~~l~~L~~~Gi~---~~~vIIDDGWQ~~~~~~~~~~~~~~~~~~~~~~ 304 (815)
..+|||||||+|+++ +||+.|++.++.|++.|++ ++||+||||||...++..
T Consensus 8 tppmGWnsW~~~~~~~d~~~~~~~~i~e~~i~~~ad~~~~~Gl~~~G~~~~~iDDgW~~~~rd~~--------------- 72 (404)
T 3hg3_A 8 TPTMGWLHWERFMCNLDCQEEPDSCISEKLFMEMAELMVSEGWKDAGYEYLCIDDCWMAPQRDSE--------------- 72 (404)
T ss_dssp SCCEEEESHHHHTTCCCTTTCTTTSSSHHHHHHHHHHHHHTTHHHHTCCEEECCSSCBCSSCCTT---------------
T ss_pred CCCEEEECHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCEEEEECCCCCCCCCCCC---------------
T ss_conf 99637775765555865454556785999999999999977747659819999887677887889---------------
Q ss_pred CCCCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 35798668-74554345876788959999999840998379887401366577678976633333322355789998788
Q 003500 305 RLTGIKEN-SKFQKKCQNSEQVSGLKHVVDESKQNHNVKYVYVWHALAGYWGGVKPAADGMEHYDTALAYPVTSPGVMGN 383 (815)
Q Consensus 305 rL~~~~~n-~KFp~~~~~~~~p~GLk~lv~~Ik~~~Glk~vgvWHal~GYWgGI~P~~~~~~~y~~~~~~p~~spG~~~~ 383 (815)
++|.++ .||| +||++++++||+ +||| +|+|..+ |. .++. ..||+.+.
T Consensus 73 --G~~~~~~~kFP---------~Gl~~l~~~ih~-~Glk-~Giw~~~-----g~----------~tC~----~~pGs~~~ 120 (404)
T 3hg3_A 73 --GRLQADPQRFP---------HGIRQLANYVHS-KGLK-LGIYADV-----GN----------KTCA----GFPGSFGY 120 (404)
T ss_dssp --SCCCBCTTTST---------THHHHHHHHHHH-TTCE-EEEEEES-----SS----------BCTT----SSBCCTTC
T ss_pred --CCEEECHHHCC---------CCHHHHHHHHHH-CCCE-EEEEECC-----CC----------CCCC----CCCCCHHH
T ss_conf --98600854359---------999999999997-7973-6899537-----86----------6468----98762787
Q ss_pred CCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 89603114432556755978899999999999985199799982554021016999980028999999999999830999
Q 003500 384 QPDIVMDSLAVHGLGLVHPKKVFNFYNELHAYLASCGVDGVKVDVQNIIETLGAGHGGRVSLTRSYHQALEASIARNFPD 463 (815)
Q Consensus 384 ~pd~a~d~~~~~G~glv~p~~a~~fy~~~~~~Las~GVD~VKvD~q~~l~~l~~~~~grv~l~~ay~~AL~~s~~r~f~g 463 (815)
+ ..+++ .+++|||||||+|+|+.- . ......-+.+|..++++ .|
T Consensus 121 ~-----------------~~da~--------~fa~WGvDylK~D~C~~~--------~-~~~~~~~y~~m~~AL~~--tG 164 (404)
T 3hg3_A 121 Y-----------------DIDAQ--------TFADWGVDLLKFAGCYCD--------S-LENLADGYKHMSLALNR--TG 164 (404)
T ss_dssp H-----------------HHHHH--------HHHHHTCCEEEEECCSCS--------C-HHHHHHHHHHHHHHHHH--TT
T ss_pred H-----------------HHHHH--------HHHHHCCCEEEECCCCCC--------C-CHHHHHHHHHHHHHHHH--CC
T ss_conf 9-----------------99999--------999859818986476787--------5-24578999999999996--09
Q ss_pred CCEEEECCCCCCCCCC---------CCCCCEEECCCCCCCCCCCCHHHHHH---HHHHHHHHCCCCCCCCCCCCCCCC--
Q ss_conf 9389512678988534---------55557487148658789664146888---766644210589789985356788--
Q 003500 464 NGCISCMCHNTDGIYS---------SKQTAVIRASDDYYPRDPASHTIHIS---SVAYNTLFLGEFMQPDWDMFHSLH-- 529 (815)
Q Consensus 464 ~~iI~CMs~~~~~l~~---------~~~~~~~R~SDDf~p~~p~s~~~Hi~---~~a~nsl~~g~~~~PDwDMF~s~h-- 529 (815)
|+|+++ |.++...+. .+.+|+||+++|+++.|.....+.-. .+...+.+.+++.|||+||+..++
T Consensus 165 Rpi~~s-c~w~~~~~~~~~~~~~~~~~~~n~WR~~~Di~d~W~sv~~i~~~~~~~~~~~~~~agpG~wnDpDML~vGn~g 243 (404)
T 3hg3_A 165 RSIVYS-CEWPLYMWPFQKPNYTEIRQYCNHWRNFADIDDSWKSIKSILDWTSFNQERIVDVAGPGGWNDPDMLVIGNFG 243 (404)
T ss_dssp CCCEEE-ECTGGGGTTTSCCCHHHHHHHCSEEECSCCCCSSHHHHHHHHHHHHHTHHHHTTTCBTTBEEECCCBCTTSSS
T ss_pred CCEEEE-ECCCCCCCCCCCCCHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCC
T ss_conf 988998-0788665655662367775017378953985756677999998876542566750489886897612228999
Q ss_pred ---HHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHC-------CCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf ---13789999988339827920699999388773220-------89994551179998775332347688985238998
Q 003500 530 ---PAAEYHGAARAVGGCAIYVSDKPGNHNFDLLRKLV-------LPDGSVLRAQLPGRPTRDCLFADPARDGTSLLKVW 599 (815)
Q Consensus 530 ---~~a~~HaaaraisGgPvyiSD~pg~hd~~lL~~Lv-------~pdG~ilR~~~pg~pt~d~lf~dp~~d~~~lLki~ 599 (815)
.+.++|+++|||+++|+++|+...+.+-+-+.-|. .+|.. |++.+. ++. ++. +-||
T Consensus 244 lT~~E~rthfslWai~~sPLiiG~Dl~~~~~~tl~iLtN~evIAinQD~l-------G~q~~~-v~~----~~~--~~VW 309 (404)
T 3hg3_A 244 LSWNQQVTQMALWAIMAAPLFMSNDLRHISPQAKALLQDKDVIAINQDPL-------GKQGYQ-LRQ----GDN--FEVW 309 (404)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEECSCTTSCCHHHHHHHTCHHHHHHHTCTT-------CCCCEE-EEE----ETT--EEEE
T ss_pred CCHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHCCHHHHHHHCCCC-------CCCCEE-EEE----CCC--EEEE
T ss_conf 89899999999999855854841772428989998865988875522556-------776469-886----598--5899
Q ss_pred EEC--CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCEEEEEECCCE-EEECCCCC
Q ss_conf 432--786137998604896100012212368999603565532651035654078988858999913555-99669998
Q 003500 600 NVN--KCSGVVGVFNCQGAGWCKITKKTRIHDESPGTLTASVRVTDVENMAQIAGAGWNGDAIVYAHRSGE-VVRLPKGA 676 (815)
Q Consensus 600 n~~--~~~gvig~FN~~ga~w~~~~~~~~~~~~~~~~~s~~v~~~D~~~~~~~~~~~~~~~~vvy~~~sg~-~~~l~~~~ 676 (815)
... .++-+|++||....+ .+.+-.+..+++.... + ...+.|.|+.--+++ +.......
T Consensus 310 ~~~l~~g~~aValfN~~~~~---------------~~~~vtv~~~~lGl~~--~--~~~~~~~vrDLW~~~~lg~~~~~~ 370 (404)
T 3hg3_A 310 ERPLSGLAWAVAMINRQEIG---------------GPRSYTIAVASLGKGV--A--CNPACFITQLLPVKRKLGFYEWTS 370 (404)
T ss_dssp EEECSTTCEEEEEEECCCSS---------------SCEEEEEEGGGSGGGT--T--TSSEEEEEEEESSCEEEEEEETTC
T ss_pred EEECCCCCEEEEEEECCCCC---------------CCEEEEEEHHHCCCCC--C--CCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 99979997899999758988---------------7669998899929863--4--789825999888996024103466
Q ss_pred EEEEEECCCCEEEEEEEEEEE
Q ss_conf 076994278379999856422
Q 003500 677 SVPVTLKVLEYELFHFCPLKE 697 (815)
Q Consensus 677 ~~~v~L~~~~~ei~t~~Pv~~ 697 (815)
.++++|++.+.-+|.+.|...
T Consensus 371 ~~~~~V~pHg~~llrlt~~~~ 391 (404)
T 3hg3_A 371 RLRSHINPTGTVLLQLENTMQ 391 (404)
T ss_dssp EEEEEECTTCEEEEEEEEHHH
T ss_pred EEEEEECCCEEEEEEEECCCC
T ss_conf 389999998089999981786
No 3
>1zy9_A Alpha-galactosidase; TM1192, struc genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI, hydrolase; 2.34A {Thermotoga maritima} SCOP: b.30.5.11 c.1.8.13
Probab=1.00 E-value=1 Score=319.54 Aligned_cols=384 Identities=16% Similarity=0.125 Sum_probs=253.5
Q ss_pred EEEEEEEECCCEEEEEECCCCCEEEEEEECCCCCE-ECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99999801484588862589980999996499500-02455128999708995799999999999975015532225587
Q 003500 157 YTVFLPLLEGQFRSALQGNENNEIEICLESGDNAV-ETNQGLYLVYTHAGPNPFEVISQAVKAVEKYMQTFTHREKKKLP 235 (815)
Q Consensus 157 y~v~Lpl~~g~~ra~L~~~~~~~l~i~~esg~~~~-~~~~~~~~v~v~~g~dp~~~i~~A~~~v~~~l~t~~~~~~k~~P 235 (815)
+.++=.++++.++..+.-+ ++++.++++...+.. ++.+..+.++. .|++|.+++++..++.+++. . ...
T Consensus 122 ~~~~G~~~~~~~~~~f~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~-~g~~~~~v~~~y~~l~g~~~-~--p~w----- 191 (564)
T 1zy9_A 122 GKVYGFLSSKIAHPFFAVE-DGELVAYLEYFDVEFDDFVPLEPLVVL-EDPNTPLLLEKYAELVGMEN-N--ARV----- 191 (564)
T ss_dssp TEEEEESCCSSSEEEEEEE-TTEEEEEEECTTCCEEEEEECCCEEEE-ECSCHHHHHHHHHHHHHHHT-T--CCC-----
T ss_pred CEEEEEEECCCCCCEEEEE-CCCEEEEEECCCCCCCCEEECCEEEEE-ECCCHHHHHHHHHHHHCCCC-C--CCC-----
T ss_conf 6279998637766358973-583799996279653541431309999-58999999999999866268-9--854-----
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCC-CCC
Q ss_conf 7334443234323212369888999999878299998189981655755699985420121011011133579866-874
Q 003500 236 SFLDWFGWCTWDAFYTDVTAEGVDEGLKSLSAGGTPPKFLIIDDGWQQIENKPKEESNCIVQEGAQFASRLTGIKE-NSK 314 (815)
Q Consensus 236 ~~ld~lGWCTWdafy~~vte~~I~~~l~~L~~~Gi~~~~vIIDDGWQ~~~~~~~~~~~~~~~~~~~~~~rL~~~~~-n~K 314 (815)
....+||||||++||+++|++.|++.++.+++.|+. +++||||||+.. ++|.. +.|
T Consensus 192 ~~~~P~gwnsW~~~~~~~te~~v~~~ad~~~~~G~~--~~~IDdgW~~~~---------------------Gdw~~d~~k 248 (564)
T 1zy9_A 192 PKHTPTGWCSWYHYFLDLTWEETLKNLKLAKNFPFE--VFQIDDAYEKDI---------------------GDWLVTRGD 248 (564)
T ss_dssp CSSCCEEEESHHHHGGGCCHHHHHHHHHHGGGTTCS--EEEECTTSEEET---------------------TEEEEECTT
T ss_pred CCCCCEEECCHHCCCCCCCHHHHHHHHHHHHHCCCC--EEEECCCCCCCC---------------------CCCCCCCCC
T ss_conf 568835771520427579999999999999845982--999886512225---------------------885538545
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC-
Q ss_conf 5543458767889599999998409983798874013665776789766333333223557899987888960311443-
Q 003500 315 FQKKCQNSEQVSGLKHVVDESKQNHNVKYVYVWHALAGYWGGVKPAADGMEHYDTALAYPVTSPGVMGNQPDIVMDSLA- 393 (815)
Q Consensus 315 Fp~~~~~~~~p~GLk~lv~~Ik~~~Glk~vgvWHal~GYWgGI~P~~~~~~~y~~~~~~p~~spG~~~~~pd~a~d~~~- 393 (815)
|| + |++++++||+ +|+| +|+|..+. .+.++++..+.++..++.. +|.... ....+.
T Consensus 249 FP---------~-lk~lvd~lh~-~Glk-~Giw~~P~----~v~~~S~ly~~~pdw~v~~---~G~~~~----~~~~W~~ 305 (564)
T 1zy9_A 249 FP---------S-VEEMAKVIAE-NGFI-PGIWTAPF----SVSETSDVFNEHPDWVVKE---NGEPKM----AYRNWNK 305 (564)
T ss_dssp CC---------C-HHHHHHHHHH-TTCE-EEEEECTT----EEETTCHHHHHCGGGBCEE---TTEECE----EEEETTE
T ss_pred CC---------C-HHHHHHHHHH-CCCE-EEEEECCC----CCCCCCHHHHHCCCEEEEC---CCEEEE----EECCCCC
T ss_conf 89---------9-8999999998-7998-99996777----5688986688688869965---995222----0012578
Q ss_pred -CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCC-CCCEEEECC
Q ss_conf -255675597889999999999998519979998255402101699998002899999999999983099-993895126
Q 003500 394 -VHGLGLVHPKKVFNFYNELHAYLASCGVDGVKVDVQNIIETLGAGHGGRVSLTRSYHQALEASIARNFP-DNGCISCMC 471 (815)
Q Consensus 394 -~~G~glv~p~~a~~fy~~~~~~Las~GVD~VKvD~q~~l~~l~~~~~grv~l~~ay~~AL~~s~~r~f~-g~~iI~CMs 471 (815)
...+++.+|+ ++.|+.+..+.+++|||||||+|+|......+..++ .+...++|+++|++. ++.++ +.-+.+|++
T Consensus 306 ~~~~lD~t~P~-a~~~~~~~~~~~~~~GVD~iK~D~~~~~~~~g~~~~-~~~~~~~y~~~l~~l-~~~~pr~i~i~~C~~ 382 (564)
T 1zy9_A 306 KIYALDLSKDE-VLNWLFDLFSSLRKMGYRYFKIDFLFAGAVPGERKK-NITPIQAFRKGIETI-RKAVGEDSFILGCGS 382 (564)
T ss_dssp EEEEBCTTCHH-HHHHHHHHHHHHHHTTCCEEEECCGGGGGCSSBCSS-SCCHHHHHHHHHHHH-HHHHCTTSEEEECSC
T ss_pred CEEECCCCCHH-HHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC-CCHHHHHHHHHHHHH-HHHCCCCEEEEECCC
T ss_conf 63412899877-999999999999864998899847887666654346-354999999999999-965799729980488
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCH-------HHHHHHHHHHHHHCCCC-CCCCCCCCCCCC-------HHHHHHH
Q ss_conf 78988534555574871486587896641-------46888766644210589-789985356788-------1378999
Q 003500 472 HNTDGIYSSKQTAVIRASDDYYPRDPASH-------TIHISSVAYNTLFLGEF-MQPDWDMFHSLH-------PAAEYHG 536 (815)
Q Consensus 472 ~~~~~l~~~~~~~~~R~SDDf~p~~p~s~-------~~Hi~~~a~nsl~~g~~-~~PDwDMF~s~h-------~~a~~Ha 536 (815)
+ .......+++||+|+|+.+.|.... ..+...++++.+++... .|+|+||++.++ .++++|+
T Consensus 383 g---~~~s~~~~n~~Ris~Di~~~W~s~~~~~~~p~~~~~~~n~~~~~~~~~~~~~nDPDml~vg~~~~~lT~~E~r~h~ 459 (564)
T 1zy9_A 383 P---LLPAVGCVDGMRIGPDTAPFWGEHIEDNGAPAARWALRNAITRYFMHDRFWLNDPDCLILREEKTDLTQKEKELYS 459 (564)
T ss_dssp B---SGGGTTTCSEEECSSCCCSSCCTTSCSSSSSCHHHHHHHHHHTGGGBTTTBEEECCCBCCCSSSCCCCHHHHHHHH
T ss_pred C---CCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHHHHHH
T ss_conf 6---6442150346898488466666633212347899999999988865268764079875756888999999999999
Q ss_pred HHHHHCCCCEEEECCCC---CCCHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECC-CCCEEEEEE
Q ss_conf 99883398279206999---99388773220899945511799987753323476889852389984327-861379986
Q 003500 537 AARAVGGCAIYVSDKPG---NHNFDLLRKLVLPDGSVLRAQLPGRPTRDCLFADPARDGTSLLKVWNVNK-CSGVVGVFN 612 (815)
Q Consensus 537 aaraisGgPvyiSD~pg---~hd~~lL~~Lv~pdG~ilR~~~pg~pt~d~lf~dp~~d~~~lLki~n~~~-~~gvig~FN 612 (815)
++|||+|+|+++||.+. .+++++|++++..+|...|.. ++..+.. +..+|.-.. .+-+|++||
T Consensus 460 alwAi~g~PLiigddl~~l~~~~l~lL~evIavng~~~~~~------------~~~~~~~-vw~v~a~~~~~g~aValfN 526 (564)
T 1zy9_A 460 YTCGVLDNMIIESDDLSLVRDHGKKVLKETLELLGGRPRVQ------------NIMSEDL-RYEIVSSGTLSGNVKIVVD 526 (564)
T ss_dssp HHHHHTTCCEEECSCGGGCCHHHHHHHHHHHTTCSSEEEET------------TTTCSSS-EEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEE------------CCCCCCE-EEEEECCCCCCCEEEEEEE
T ss_conf 99999708726636836599999999999999729830330------------5898724-8998467788988999997
Q ss_pred ECC
Q ss_conf 048
Q 003500 613 CQG 615 (815)
Q Consensus 613 ~~g 615 (815)
...
T Consensus 527 ~~~ 529 (564)
T 1zy9_A 527 LNS 529 (564)
T ss_dssp TTT
T ss_pred CCC
T ss_conf 899
No 4
>1szn_A Alpha-galactosidase; (beta/alpha)8 barrel,TWO domains, glycoprotein, hydrolase; HET: NAG BMA MAN; 1.54A {Hypocrea jecorina} SCOP: b.71.1.1 c.1.8.1 PDB: 1t0o_A*
Probab=1.00 E-value=1 Score=315.30 Aligned_cols=354 Identities=17% Similarity=0.205 Sum_probs=230.8
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC---CCEEEEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCC-C
Q ss_conf 3444323432321236988899999987829999---81899816557556999854201210110111335798668-7
Q 003500 238 LDWFGWCTWDAFYTDVTAEGVDEGLKSLSAGGTP---PKFLIIDDGWQQIENKPKEESNCIVQEGAQFASRLTGIKEN-S 313 (815)
Q Consensus 238 ld~lGWCTWdafy~~vte~~I~~~l~~L~~~Gi~---~~~vIIDDGWQ~~~~~~~~~~~~~~~~~~~~~~rL~~~~~n-~ 313 (815)
..+||||||++||+++||+.|++.++.+++.|+. ++||+||||||..+++. +++|.++ .
T Consensus 11 ~ppmgwnsW~~~~~~~~e~~i~~~ad~~~~~gl~~~G~~~~~iDdgW~~~~~d~-----------------~G~~~~~~~ 73 (417)
T 1szn_A 11 VPSLGWNSWNAYHCDIDESKFLSAAELIVSSGLLDAGYNYVNIDDCWSMKDGRV-----------------DGHIAPNAT 73 (417)
T ss_dssp SCCEEEESHHHHTTCCCHHHHHHHHHHHHHTTHHHHTCCEEECCSSCBCTTCCB-----------------TTBCCBCTT
T ss_pred CCCEEEECHHHHCCCCCHHHHHHHHHHHHHCCCHHHCCCEEEECCCCCCCCCCC-----------------CCCEEECCC
T ss_conf 897899826725857899999999999987683552987899878746799888-----------------898777732
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 45543458767889599999998409983798874013665776789766333333223557899987888960311443
Q 003500 314 KFQKKCQNSEQVSGLKHVVDESKQNHNVKYVYVWHALAGYWGGVKPAADGMEHYDTALAYPVTSPGVMGNQPDIVMDSLA 393 (815)
Q Consensus 314 KFp~~~~~~~~p~GLk~lv~~Ik~~~Glk~vgvWHal~GYWgGI~P~~~~~~~y~~~~~~p~~spG~~~~~pd~a~d~~~ 393 (815)
||| +||++++++||+ +||| +|+|+..-..| +. ..||+.+.
T Consensus 74 kFP---------~Gl~~l~~~i~~-~Glk-~Giw~~~g~~~---------------c~----~~Pgs~~~---------- 113 (417)
T 1szn_A 74 RFP---------DGIDGLAKKVHA-LGLK-LGIYSTAGTAT---------------CA----GYPASLGY---------- 113 (417)
T ss_dssp TCT---------THHHHHHHHHHH-TTCE-EEEEEESSSBC---------------TT----SCBCCTTC----------
T ss_pred CCC---------CCHHHHHHHHHH-CCCE-EEEEECCCCCH---------------HC----CCCCHHHH----------
T ss_conf 377---------579999999997-6998-79991799743---------------03----69425758----------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHCCC-----------------------------CCCCCHH
Q ss_conf 25567559788999999999999851997999825540210169-----------------------------9998002
Q 003500 394 VHGLGLVHPKKVFNFYNELHAYLASCGVDGVKVDVQNIIETLGA-----------------------------GHGGRVS 444 (815)
Q Consensus 394 ~~G~glv~p~~a~~fy~~~~~~Las~GVD~VKvD~q~~l~~l~~-----------------------------~~~grv~ 444 (815)
++...+++++|||||||+|+|.....+.. ++.....
T Consensus 114 ---------------~~~d~~~~~~wGvdylK~D~~~~~~~~~~~~~~~~~~~~~~~~~~t~g~~~~p~~~~~~~~~~~~ 178 (417)
T 1szn_A 114 ---------------EDVDAADFADWGVDYLKYDNCNVPSDWQDEYVACNPDFVKTGPNGTCTTALDPTLAPPGYDWSTS 178 (417)
T ss_dssp ---------------HHHHHHHHHHTTCCEEEEECCCCCGGGSCSSBCCCTTTSCCBGGGBCCTTTCTTBCCTTCCGGGS
T ss_pred ---------------HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf ---------------99999999975999999899888533112344455544444444443333454446532123304
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEECCCCCCC---CCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 89999999999998309999389512678988---534555574871486587896641468887666442105897899
Q 003500 445 LTRSYHQALEASIARNFPDNGCISCMCHNTDG---IYSSKQTAVIRASDDYYPRDPASHTIHISSVAYNTLFLGEFMQPD 521 (815)
Q Consensus 445 l~~ay~~AL~~s~~r~f~g~~iI~CMs~~~~~---l~~~~~~~~~R~SDDf~p~~p~s~~~Hi~~~a~nsl~~g~~~~PD 521 (815)
.....|++|++++++.+ ++|+.++|.++.. .|..+.+++||+|+|+++.|+....+ +..+++...+.+.+.|+|
T Consensus 179 ~~~~~Y~~m~~aL~~~~--~~i~~~~C~~G~~~~~~w~~~~~n~wR~s~D~~d~w~~~~~i-~~~~~~~~~~~~~g~~~D 255 (417)
T 1szn_A 179 KSAERFGAMRNALAKQS--HEIVLSMCIWGQADVFSWGNSTGISWRMSDDISPNWGSVTRI-LNLNSFKLNSVDFWGHND 255 (417)
T ss_dssp HHHHHHHHHHHHHHTSS--SCCEEEECCTTGGGHHHHGGGTCSEEECSSCCCSSHHHHHHH-HHHHHTCGGGCBTTBEEE
T ss_pred HHHHHHHHHHHHHHHHC--CCEEEEECCCCCCCCHHHHHHCCCCEEECCCCCCCHHHHHHH-HHHHHHHCCCCCCCCCCC
T ss_conf 68999999999999868--998999677777761556764043022157855257789999-998755331046853058
Q ss_pred CCCCCCCC-----HHHHHHHHHHHHCCCCEEEECCCCCCC---HHHHH--HHC--CCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 85356788-----137899999883398279206999993---88773--220--8999455117999877533234768
Q 003500 522 WDMFHSLH-----PAAEYHGAARAVGGCAIYVSDKPGNHN---FDLLR--KLV--LPDGSVLRAQLPGRPTRDCLFADPA 589 (815)
Q Consensus 522 wDMF~s~h-----~~a~~HaaaraisGgPvyiSD~pg~hd---~~lL~--~Lv--~pdG~ilR~~~pg~pt~d~lf~dp~ 589 (815)
+||+..++ .+.++|+++||++|+|+++|+.+.+.+ .++|+ .++ .+|... -.++++.+--.-.+..
T Consensus 256 ~DmL~vg~~~~t~~E~r~~~alwa~~gspL~ig~dl~~l~~~~~~~L~N~eviav~qd~~l---g~~~~~v~w~~~p~~~ 332 (417)
T 1szn_A 256 ADMLEVGNGNLTAAETRTHFALWAAMKSPLLIGTDLAQLSQNNINLLKNKHLLAFNQDSVY---GQPATPYKWGINPDWT 332 (417)
T ss_dssp CCSCCTTCTTCCHHHHHHHHHHHHHTTCCEEECSCGGGCCHHHHHHHTCHHHHHHHTCSSC---CSCCEEEECSSSCTTC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHCCHHHHHHCCCCCC---CCCEEEEECCCCCCCC
T ss_conf 8634569999898999999999998489668637714299999988637688853465225---8644884125566544
Q ss_pred CCCCCEEEEEEE--CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCEEEEEECCC
Q ss_conf 898523899843--278613799860489610001221236899960356553265103565407898885899991355
Q 003500 590 RDGTSLLKVWNV--NKCSGVVGVFNCQGAGWCKITKKTRIHDESPGTLTASVRVTDVENMAQIAGAGWNGDAIVYAHRSG 667 (815)
Q Consensus 590 ~d~~~lLki~n~--~~~~gvig~FN~~ga~w~~~~~~~~~~~~~~~~~s~~v~~~D~~~~~~~~~~~~~~~~vvy~~~sg 667 (815)
.+...-..+|.. ..+ -+|++||.... +.+-.+...+++++. .+.|.|+..-++
T Consensus 333 ~~~~~~~~vw~~~l~~g-~~v~l~N~~~~-----------------~~~~~~~~~~l~gl~-------~~~~~v~DlW~~ 387 (417)
T 1szn_A 333 FNVTYPAEFWAGPSSKG-HLVLMVNTLDI-----------------TATKEAKWNEIPGLS-------AGHYEVRDVWSD 387 (417)
T ss_dssp CCSSSCCCEEEECCTTC-EEEEEECCSSS-----------------CEEEEECGGGSTTCC-------SSEEEEEETTTT
T ss_pred CCCCCCCCEEEEECCCC-CEEEEEECCCC-----------------CEEEEECHHHCCCCC-------CCCEEEEECCCC
T ss_conf 47788710788885898-19999977998-----------------556786889908988-------886599987699
Q ss_pred EEEECCCCCEEEEEECCCCEEEEEEEEEE
Q ss_conf 59966999807699427837999985642
Q 003500 668 EVVRLPKGASVPVTLKVLEYELFHFCPLK 696 (815)
Q Consensus 668 ~~~~l~~~~~~~v~L~~~~~ei~t~~Pv~ 696 (815)
+-.-. ...+.++|++.+.-+|.+.|.-
T Consensus 388 ~~~g~--~~~~~~~v~~h~~~l~~l~~~~ 414 (417)
T 1szn_A 388 KDLGC--LSSYKAAVAAHDTAVILVGKKC 414 (417)
T ss_dssp EEEEE--ESSEEEEECTTCEEEEEEEEEE
T ss_pred CCCCC--CCEEEEEECCCEEEEEEEECCC
T ss_conf 75664--6628999999808999997155
No 5
>3a21_A Putative secreted alpha-galactosidase; beta-alpha-barrel, greek KEY motif, beta-jellyroll, beta-TRE hydrolase; HET: GOL 1PG EPE; 1.51A {Streptomyces avermitilis} PDB: 3a22_A* 3a23_A*
Probab=1.00 E-value=1 Score=314.87 Aligned_cols=356 Identities=18% Similarity=0.198 Sum_probs=229.1
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC---CCEEEEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCC
Q ss_conf 733444323432321236988899999987829999---81899816557556999854201210110111335798668
Q 003500 236 SFLDWFGWCTWDAFYTDVTAEGVDEGLKSLSAGGTP---PKFLIIDDGWQQIENKPKEESNCIVQEGAQFASRLTGIKEN 312 (815)
Q Consensus 236 ~~ld~lGWCTWdafy~~vte~~I~~~l~~L~~~Gi~---~~~vIIDDGWQ~~~~~~~~~~~~~~~~~~~~~~rL~~~~~n 312 (815)
....+||||||++|++++||+.|++.++.+++.|+. ++||+||||||...++.. ++|.++
T Consensus 9 ~~~~p~gwnsw~~~~~~~~~~~~~~~ad~~~~~g~~~~G~~~~~iDdgW~~~~~d~~-----------------g~~~~~ 71 (614)
T 3a21_A 9 VPSAPMGWASWNSFAAKIDYSVIKKQVDAFVAAGLPAAGYTYINIDEGWWQGTRDSA-----------------GNITVD 71 (614)
T ss_dssp CCCCCEEEESHHHHTTCCCHHHHHHHHHHHHHTTHHHHTCCEEECCTTSCCSCBCTT-----------------CCBCCC
T ss_pred CCCCCEEEECHHHHCCCCCHHHHHHHHHHHHHCCHHHHCCEEEEECCCCCCCCCCCC-----------------CCEEEC
T ss_conf 789964998254117657999999999999870778639789999787578986889-----------------998788
Q ss_pred -CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf -7455434587678895999999984099837988740136657767897663333332235578999878889603114
Q 003500 313 -SKFQKKCQNSEQVSGLKHVVDESKQNHNVKYVYVWHALAGYWGGVKPAADGMEHYDTALAYPVTSPGVMGNQPDIVMDS 391 (815)
Q Consensus 313 -~KFp~~~~~~~~p~GLk~lv~~Ik~~~Glk~vgvWHal~GYWgGI~P~~~~~~~y~~~~~~p~~spG~~~~~pd~a~d~ 391 (815)
.||| +||++++++||+ +||| +|+|+.+. +... ... +|...++ .|
T Consensus 72 ~~~fP---------~gl~~l~~~i~~-~Glk-~gi~~~~~-----~~~~---~~~------~p~~~~~----~p------ 116 (614)
T 3a21_A 72 TAEWP---------GGMSAITAYIHS-KGLK-AGIYTDAG-----KDGC---GYY------YPTGRPA----AP------ 116 (614)
T ss_dssp TTTST---------TCHHHHHHHHHH-TTCE-EEEEEESS-----SSCH---HHH------SCSSSCC----CT------
T ss_pred CCCCC---------CCHHHHHHHHHH-CCCE-EEEEECCC-----CCCC---CCC------CCCCCCC----CC------
T ss_conf 01037---------758999999997-7986-58996387-----7543---333------7777778----87------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 43255675597889999999999998519979998255402101699998002899999999999983099993895126
Q 003500 392 LAVHGLGLVHPKKVFNFYNELHAYLASCGVDGVKVDVQNIIETLGAGHGGRVSLTRSYHQALEASIARNFPDNGCISCMC 471 (815)
Q Consensus 392 ~~~~G~glv~p~~a~~fy~~~~~~Las~GVD~VKvD~q~~l~~l~~~~~grv~l~~ay~~AL~~s~~r~f~g~~iI~CMs 471 (815)
|.+ ++.||+..++++++|||||||+|+|...+. . ...++..+++++||..++.+ .+++|+.|||
T Consensus 117 ----g~g------~~~~~~~~~~~~~~wGvd~lK~D~~~~~~~---~-~~~~~~y~~~~~al~~~~~~--~gr~i~~s~c 180 (614)
T 3a21_A 117 ----GSG------SEGHYDQDMLQFSTWGFDFVKVDWCGGDAE---G-LDAATTYKSISDAVGRAAAT--TGRPLTLSIC 180 (614)
T ss_dssp ----TCS------CTTCHHHHHHHHHHHTCSEEEEECHHHHHH---T-CCHHHHHHHHHHHHHHHHHH--HSCCCEEEEC
T ss_pred ----CHH------HHHHHHHHHHHHHHCCCCEEEECCCCCCCC---C-CCHHHHHHHHHHHHHHHHHH--CCCCEEEEEC
T ss_conf ----602------577999999999875986798656678654---4-10577899999999999985--3997699845
Q ss_pred CCCCC---CCCCCCCCEEECCCCCCCCCCC-CHHHHHHHHH-HHH-HHCCCCCCCCCCCCCCCCH-----HHHHHHHHHH
Q ss_conf 78988---5345555748714865878966-4146888766-644-2105897899853567881-----3789999988
Q 003500 472 HNTDG---IYSSKQTAVIRASDDYYPRDPA-SHTIHISSVA-YNT-LFLGEFMQPDWDMFHSLHP-----AAEYHGAARA 540 (815)
Q Consensus 472 ~~~~~---l~~~~~~~~~R~SDDf~p~~p~-s~~~Hi~~~a-~ns-l~~g~~~~PDwDMF~s~h~-----~a~~Haaara 540 (815)
+++.. .|...++++||+++|+++.+.. +...++.... .++ +..++++|||+||+.+++. +.+.|+++||
T Consensus 181 ~~g~~~~~~~~~~~~~~wR~~~Di~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~nD~Dml~~g~~~~t~~e~~~~~alwa 260 (614)
T 3a21_A 181 NWGYQNPWNWAAGQAPLWRTSTDIIYYGNQPSMTSLLSNFDQTLHPTAQHTGYYNDPDMLMVGMDGFTAAQNRTHMNLWA 260 (614)
T ss_dssp CTTTTCGGGTCTTTCSEEECSSCSCCTTSCCCHHHHHHHHHHHCCTTTCBTTBEEECCSCCTTCTTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 77667755642032760003402123345575689999999864688638995068875432799989999999999999
Q ss_pred HCCCCEEEECCCCCCCHHHHHHHCCCCCCEEECCC-----CCCCCCCCCCCCCCCCCCCEEEEEEEC---CCCCEEEEEE
Q ss_conf 33982792069999938877322089994551179-----998775332347688985238998432---7861379986
Q 003500 541 VGGCAIYVSDKPGNHNFDLLRKLVLPDGSVLRAQL-----PGRPTRDCLFADPARDGTSLLKVWNVN---KCSGVVGVFN 612 (815)
Q Consensus 541 isGgPvyiSD~pg~hd~~lL~~Lv~pdG~ilR~~~-----pg~pt~d~lf~dp~~d~~~lLki~n~~---~~~gvig~FN 612 (815)
|+++||++||.+.+++.+.++-|..++ +++... .+++. ..++ + -+-||... .+.-+|++||
T Consensus 261 i~~sPL~~g~Dl~~~~~~~~~il~n~e--~ia~~qd~~g~~~~~v----~~~~---~--~~~vw~~~l~~~g~~~v~~~N 329 (614)
T 3a21_A 261 ISGAPLLAGNDLTTMTSETAGILKNPE--VIAVDQDSRGLQGVKV----AEDT---T--GLQAYGKVLSGTGNRAVVLLN 329 (614)
T ss_dssp HHTCCEEECSCGGGCCHHHHHHHTCHH--HHHHHTCTTCCCCEEE----EEEE---T--TEEEEEEECSSSSCEEEEEEE
T ss_pred HHCCCCEECCCCCCCCHHHHHHHCCHH--HHHHCCCCCCCCCEEE----EECC---C--CEEEEEEECCCCCCEEEEEEE
T ss_conf 876952750772308998987754967--7643355457786798----8568---9--739999874789949999998
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCEEEEEECCCE-EEECCCCCEEEEEECCCCEEEEE
Q ss_conf 04896100012212368999603565532651035654078988858999913555-99669998076994278379999
Q 003500 613 CQGAGWCKITKKTRIHDESPGTLTASVRVTDVENMAQIAGAGWNGDAIVYAHRSGE-VVRLPKGASVPVTLKVLEYELFH 691 (815)
Q Consensus 613 ~~ga~w~~~~~~~~~~~~~~~~~s~~v~~~D~~~~~~~~~~~~~~~~vvy~~~sg~-~~~l~~~~~~~v~L~~~~~ei~t 691 (815)
..... .+-.+..+++.. + ...|.|+..-+++ +.. ....+.++|++.+..+|.
T Consensus 330 ~~~~~-----------------~~~~~~l~~lg~-------~-~~~~~v~dlw~~~~~~~--~~~~~~~~v~~h~~~~~~ 382 (614)
T 3a21_A 330 RTSAA-----------------HDITVRWSDLGL-------T-NASATVRDLWARQNVGT--SATGYTASVPAGGSVMLT 382 (614)
T ss_dssp CSSSC-----------------EEEEEEHHHHTB-------C-SSCEEEEETTTTEEEEE--ESSEEEEEECTTCEEEEE
T ss_pred CCCCC-----------------EEEEEEHHHHCC-------C-CCCEEEEECCCCCCCCC--CCCEEEEEECCCEEEEEE
T ss_conf 89997-----------------889998899388-------8-88359998989985564--065699998997399999
Q ss_pred EEEEEE
Q ss_conf 856422
Q 003500 692 FCPLKE 697 (815)
Q Consensus 692 ~~Pv~~ 697 (815)
+.|...
T Consensus 383 l~~~g~ 388 (614)
T 3a21_A 383 VTGGTE 388 (614)
T ss_dssp EESCCB
T ss_pred ECCCCC
T ss_conf 837777
No 6
>1uas_A Alpha-galactosidase; TIM-barrel, beta-alpha-barrel, greek KEY motif, hydrolase; HET: GLA; 1.50A {Oryza sativa} SCOP: b.71.1.1 c.1.8.1
Probab=1.00 E-value=1 Score=314.78 Aligned_cols=332 Identities=17% Similarity=0.238 Sum_probs=224.6
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC---CCEEEEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCC-C
Q ss_conf 3444323432321236988899999987829999---81899816557556999854201210110111335798668-7
Q 003500 238 LDWFGWCTWDAFYTDVTAEGVDEGLKSLSAGGTP---PKFLIIDDGWQQIENKPKEESNCIVQEGAQFASRLTGIKEN-S 313 (815)
Q Consensus 238 ld~lGWCTWdafy~~vte~~I~~~l~~L~~~Gi~---~~~vIIDDGWQ~~~~~~~~~~~~~~~~~~~~~~rL~~~~~n-~ 313 (815)
..+||||||++|++++||+.|++.++.+++.|++ ++||+||||||...++. .++|.++ .
T Consensus 8 ~pp~gwnsW~~~~~~~~e~~i~~~ad~~~~~gl~~~G~~~v~iDdgW~~~~rd~-----------------~G~~~~~~~ 70 (362)
T 1uas_A 8 TPQMGWNSWNHFYCGINEQIIRETADALVNTGLAKLGYQYVNIDDCWAEYSRDS-----------------QGNFVPNRQ 70 (362)
T ss_dssp SCCEEEESHHHHTTCCCHHHHHHHHHHHHHTSHHHHTCCEEECCSSCBCSSCCT-----------------TSCCCBCTT
T ss_pred CCCEEEECHHHHCCCCCHHHHHHHHHHHHHCCCHHCCCCEEEECCCCCCCCCCC-----------------CCCEEECHH
T ss_conf 998799888987778899999999999997696221975999878757788789-----------------998668811
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 45543458767889599999998409983798874013665776789766333333223557899987888960311443
Q 003500 314 KFQKKCQNSEQVSGLKHVVDESKQNHNVKYVYVWHALAGYWGGVKPAADGMEHYDTALAYPVTSPGVMGNQPDIVMDSLA 393 (815)
Q Consensus 314 KFp~~~~~~~~p~GLk~lv~~Ik~~~Glk~vgvWHal~GYWgGI~P~~~~~~~y~~~~~~p~~spG~~~~~pd~a~d~~~ 393 (815)
||| +||++++++||+ +||| +|+|+.+...|-+ + ..||+
T Consensus 71 ~FP---------~Gl~~l~~~ih~-~Glk-~Giw~~~~~~~~~--~----------------~~pg~------------- 108 (362)
T 1uas_A 71 TFP---------SGIKALADYVHA-KGLK-LGIYSDAGSQTCS--N----------------KMPGS------------- 108 (362)
T ss_dssp TCT---------TCHHHHHHHHHH-TTCE-EEEEEESSSBCTT--S----------------SSBCC-------------
T ss_pred CCC---------CCHHHHHHHHHH-CCCE-EEEEEECCCCCCC--C----------------CCCCC-------------
T ss_conf 068---------668999999997-7987-6899507876145--8----------------99870-------------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC
Q ss_conf 25567559788999999999999851997999825540210169999800289999999999998309999389512678
Q 003500 394 VHGLGLVHPKKVFNFYNELHAYLASCGVDGVKVDVQNIIETLGAGHGGRVSLTRSYHQALEASIARNFPDNGCISCMCHN 473 (815)
Q Consensus 394 ~~G~glv~p~~a~~fy~~~~~~Las~GVD~VKvD~q~~l~~l~~~~~grv~l~~ay~~AL~~s~~r~f~g~~iI~CMs~~ 473 (815)
..+++..++++++|||||||+|+|... +. ...+.| .+|..++++.++ +|+.+.|.+
T Consensus 109 ------------~~~~~~~~~~~~~wGvdyvK~D~~~~~-----~~----~~~~~y-~~~~~al~~~~~--~i~~~~c~~ 164 (362)
T 1uas_A 109 ------------LDHEEQDVKTFASWGVDYLKYDNCNDA-----GR----SVMERY-TRMSNAMKTYGK--NIFFSLCEW 164 (362)
T ss_dssp ------------TTCHHHHHHHHHHHTCCEEEEECCCCT-----TC----CHHHHH-HHHHHHHHHHCT--TSEEEEEST
T ss_pred ------------HHHHHHHHHHHHHCCCCEEEECCCCCC-----CC----CHHHHH-HHHHHHHHHHCC--CCEEEECCC
T ss_conf ------------047999999999769988998763789-----97----889999-999999986399--948995678
Q ss_pred C---CCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-----HHHHHHHHHHHHCCCC
Q ss_conf 9---8853455557487148658789664146888766644210589789985356788-----1378999998833982
Q 003500 474 T---DGIYSSKQTAVIRASDDYYPRDPASHTIHISSVAYNTLFLGEFMQPDWDMFHSLH-----PAAEYHGAARAVGGCA 545 (815)
Q Consensus 474 ~---~~l~~~~~~~~~R~SDDf~p~~p~s~~~Hi~~~a~nsl~~g~~~~PDwDMF~s~h-----~~a~~HaaaraisGgP 545 (815)
+ ...|.+..+++||+|+|++|.|+..... +..++..+.+.+++.|||+||+++++ .+.++|+++||++++|
T Consensus 165 g~~~p~~w~~~~~n~~R~~~D~~~~w~~~~~~-~~~~~~~~~~~~pg~~~D~Dml~vg~~~~t~~e~~~~~al~~i~~sp 243 (362)
T 1uas_A 165 GKENPATWAGRMGNSWRTTGDIADNWGSMTSR-ADENDQWAAYAGPGGWNDPDMLEVGNGGMSEAEYRSHFSIWALAKAP 243 (362)
T ss_dssp TTTCGGGTGGGTCSEEECSSCCCSSHHHHHHH-HHHHHTTGGGCBTTBEEECCCCCTTSSSSCHHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHEEEEEECCCCCCCCHHHHHH-HHHHHHHHHHCCCCCCCCCCHHEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 88874777852300887348877671669999-99998778733898406950512589988989999999999984796
Q ss_pred EEEECCCCCCC---HHHHHH--H--CCCC--CCEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEC--CCCCEEEEEEEC
Q ss_conf 79206999993---887732--2--0899--94551179998775332347688985238998432--786137998604
Q 003500 546 IYVSDKPGNHN---FDLLRK--L--VLPD--GSVLRAQLPGRPTRDCLFADPARDGTSLLKVWNVN--KCSGVVGVFNCQ 614 (815)
Q Consensus 546 vyiSD~pg~hd---~~lL~~--L--v~pd--G~ilR~~~pg~pt~d~lf~dp~~d~~~lLki~n~~--~~~gvig~FN~~ 614 (815)
|++++.+.+.+ +++|+. + +.+| |. ++++. .. ++. ..||... .+.-+|++||..
T Consensus 244 L~~~~Dl~~~~~~~~~~l~n~evia~~qd~lg~------~~~~v----~~----~~~--~~v~a~~~~~~~~~v~~~N~~ 307 (362)
T 1uas_A 244 LLIGCDVRSMSQQTKNILSNSEVIAVNQDSLGV------QGKKV----QS----DNG--LEVWAGPLSNNRKAVVLWNRQ 307 (362)
T ss_dssp EEECSCTTSCCHHHHHHHTCHHHHHHHTCTTCC------CCEEE----EE----ETT--EEEEEEECSTTCEEEEEEECS
T ss_pred EEECCCHHHCCHHHHHHHCCHHHHHHCCCCCCC------CCEEE----EE----CCC--EEEEEEECCCCCEEEEEEECC
T ss_conf 473177002899999764387775204665575------62699----95----698--079999968998999999479
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCEEEEEECCCEEEECCCCCEEEEEECCCCEEEEEEEE
Q ss_conf 89610001221236899960356553265103565407898885899991355599669998076994278379999856
Q 003500 615 GAGWCKITKKTRIHDESPGTLTASVRVTDVENMAQIAGAGWNGDAIVYAHRSGEVVRLPKGASVPVTLKVLEYELFHFCP 694 (815)
Q Consensus 615 ga~w~~~~~~~~~~~~~~~~~s~~v~~~D~~~~~~~~~~~~~~~~vvy~~~sg~~~~l~~~~~~~v~L~~~~~ei~t~~P 694 (815)
... .+-.+..+++. + .....|.|+.--+++-.- ....++++|.+.+.-++.+.|
T Consensus 308 ~~~-----------------~~~~~~l~~lg-l------~~~~~~~v~dlw~~~~~~--~~~~l~~~l~~~g~~~~~l~~ 361 (362)
T 1uas_A 308 SYQ-----------------ATITAHWSNIG-L------AGSVAVTARDLWAHSSFA--AQGQISASVAPHDCKMYVLTP 361 (362)
T ss_dssp SSC-----------------EEEEEEGGGTT-C------CTTCEEEEEETTTTEEEE--EESEEEEEECTTCEEEEEEEE
T ss_pred CCC-----------------EEEEEEHHHCC-C------CCCCCEEEEECCCCCCCC--CCCEEEEEECCCEEEEEEEEE
T ss_conf 987-----------------78998899929-9------989837999876998666--666399999998289999983
Q ss_pred E
Q ss_conf 4
Q 003500 695 L 695 (815)
Q Consensus 695 v 695 (815)
+
T Consensus 362 ~ 362 (362)
T 1uas_A 362 N 362 (362)
T ss_dssp C
T ss_pred C
T ss_conf 9
No 7
>3lrk_A Alpha-galactosidase 1; tetramer, GH27, glycoprotein, glycosida hydrolase; HET: NAG BTB; 1.95A {Saccharomyces cerevisiae} PDB: 3lrl_A* 3lrm_A*
Probab=1.00 E-value=1 Score=310.47 Aligned_cols=292 Identities=18% Similarity=0.221 Sum_probs=194.9
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC---CCEEEEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCC-C
Q ss_conf 3444323432321236988899999987829999---81899816557556999854201210110111335798668-7
Q 003500 238 LDWFGWCTWDAFYTDVTAEGVDEGLKSLSAGGTP---PKFLIIDDGWQQIENKPKEESNCIVQEGAQFASRLTGIKEN-S 313 (815)
Q Consensus 238 ld~lGWCTWdafy~~vte~~I~~~l~~L~~~Gi~---~~~vIIDDGWQ~~~~~~~~~~~~~~~~~~~~~~rL~~~~~n-~ 313 (815)
..+|||||||+|++++||+.|++.++.+++.|++ ++||+||||||..+ +. -++|.++ .
T Consensus 29 tPpmGWNSW~~~~~~i~e~~i~~~Ad~~~~~Gl~~~GyeyvvIDDGW~~~r-d~-----------------~G~~~~d~~ 90 (479)
T 3lrk_A 29 TPQMGWDNWNTFACDVSEQLLLDTADRISDLGLKDMGYKYIILDDCWSSGR-DS-----------------DGFLVADEQ 90 (479)
T ss_dssp SCCEEEESHHHHTTCCCHHHHHHHHHHHHHTTCGGGTCCEEECCSSCEEEE-CT-----------------TSCEEECTT
T ss_pred CCCEEEECHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCC-CC-----------------CCCEECCHH
T ss_conf 995699825723867899999999999986685003962899887233466-88-----------------989825866
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 45543458767889599999998409983798874013665776789766333333223557899987888960311443
Q 003500 314 KFQKKCQNSEQVSGLKHVVDESKQNHNVKYVYVWHALAGYWGGVKPAADGMEHYDTALAYPVTSPGVMGNQPDIVMDSLA 393 (815)
Q Consensus 314 KFp~~~~~~~~p~GLk~lv~~Ik~~~Glk~vgvWHal~GYWgGI~P~~~~~~~y~~~~~~p~~spG~~~~~pd~a~d~~~ 393 (815)
||| +||++++++||+ +|+| +|+|..+- . + ++. ..||+.+
T Consensus 91 kFP---------~Glk~Lad~ih~-~GlK-fGIw~~pG-----~---------~-tC~----~~pGsl~----------- 129 (479)
T 3lrk_A 91 KFP---------NGMGHVADHLHN-NSFL-FGMYSSAG-----E---------Y-TCA----GYPGSLG----------- 129 (479)
T ss_dssp TCT---------TCHHHHHHHHHH-TTCE-EEEEEESS-----S---------B-CTT----SSBCCTT-----------
T ss_pred HCC---------CCHHHHHHHHHH-CCCE-EEEEECCC-----C---------C-CCC----CCCCHHH-----------
T ss_conf 558---------899999999997-7983-69994376-----5---------5-104----7885467-----------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC
Q ss_conf 25567559788999999999999851997999825540210169999800289999999999998309999389512678
Q 003500 394 VHGLGLVHPKKVFNFYNELHAYLASCGVDGVKVDVQNIIETLGAGHGGRVSLTRSYHQALEASIARNFPDNGCISCMCHN 473 (815)
Q Consensus 394 ~~G~glv~p~~a~~fy~~~~~~Las~GVD~VKvD~q~~l~~l~~~~~grv~l~~ay~~AL~~s~~r~f~g~~iI~CMs~~ 473 (815)
|++...+.+++|||||||+|+|+... ..+.+......+.+|.+++++ .||+|++++|.+
T Consensus 130 --------------~~~~da~~fa~WGVDylK~D~c~~~~-----~~~~~~~~~~~y~~m~~AL~~--tGRpI~~Slc~W 188 (479)
T 3lrk_A 130 --------------REEEDAQFFANNRVDYLKYDNCYNKG-----QFGTPEISYHRYKAMSDALNK--TGRPVFYSLCNW 188 (479)
T ss_dssp --------------CHHHHHHHHHHTTCCEEEEECTTCTT-----CCSSHHHHHHHHHHHHHHHHH--HCSCCEEEECST
T ss_pred --------------HHHHHHHHHHHHCCCEEEECCCCCCC-----CCCCCCHHHHHHHHHHHHHHH--HCCCEEEEECCC
T ss_conf --------------79999999998298689972677865-----568720017899999999998--699828995567
Q ss_pred CCC-C--CCCCCCCEEECCCCCCCCCCCCH-------------------H-HHHH-HHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 988-5--34555574871486587896641-------------------4-6888-766644210589789985356788
Q 003500 474 TDG-I--YSSKQTAVIRASDDYYPRDPASH-------------------T-IHIS-SVAYNTLFLGEFMQPDWDMFHSLH 529 (815)
Q Consensus 474 ~~~-l--~~~~~~~~~R~SDDf~p~~p~s~-------------------~-~Hi~-~~a~nsl~~g~~~~PDwDMF~s~h 529 (815)
+.. . |..+.+++||+++|+++.|.... . ..++ .++..+.+.+++.|||+||+..++
T Consensus 189 g~~~~~~w~~~~~n~WR~s~DI~d~W~~~~~~~~~~~~~~~~~~~g~~~sv~~i~~~~~~~~~~agpG~wNDpDML~vGn 268 (479)
T 3lrk_A 189 GQDLTFYWGSGIANSWRMSGDVTAEFTRPDSRCPCDGDEYDCKYAGFHCSIMNILNKAAPMGQNAGVGGWNDLDNLEVGV 268 (479)
T ss_dssp TTTTHHHHSTTTCSEEECSSCBCSCSSCCCTTSCSCTTCSSCSCCCSCBCHHHHHHHHGGGGGGCBTTBEEECCSBCTTS
T ss_pred CCCCHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECC
T ss_conf 66762556664387305258866665553334322343222334552235999999765556405999878988676689
Q ss_pred -----HHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHC-------CCCCCEEECCCCCCCCCCCCCC--CCCCCCCCE
Q ss_conf -----13789999988339827920699999388773220-------8999455117999877533234--768898523
Q 003500 530 -----PAAEYHGAARAVGGCAIYVSDKPGNHNFDLLRKLV-------LPDGSVLRAQLPGRPTRDCLFA--DPARDGTSL 595 (815)
Q Consensus 530 -----~~a~~HaaaraisGgPvyiSD~pg~hd~~lL~~Lv-------~pdG~ilR~~~pg~pt~d~lf~--dp~~d~~~l 595 (815)
.+.++|+++|||.++|+++|+...+.+-+-+.-|. .+|.. -.++++.+.-... |.+.+ .-
T Consensus 269 ~glT~~E~rthfslWai~~SPLiiG~DL~~~~~~tl~iLtN~evIAINQD~l----G~q~~~v~~~~~~~~d~~~~--~~ 342 (479)
T 3lrk_A 269 GNLTDDEEKAHFSMWAMVKSPLIIGANVNNLKASSYSIYSQASVIAINQDSN----GIPATRVWRYYVSDTDEYGQ--GE 342 (479)
T ss_dssp TTCCHHHHHHHHHHHHHTTCCEEECSCGGGCCHHHHHHHTCHHHHHHHTCTT----CCCCEEEEEEECSCCCTTSC--CE
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHCCHHHHHHHCCCC----CCCEEEEEECCCCCCCCCCC--CC
T ss_conf 9989899999999999872954722771318988998855999998762456----78528975035765545689--87
Q ss_pred EEEEEEC--CCCCEEEEEEECC
Q ss_conf 8998432--7861379986048
Q 003500 596 LKVWNVN--KCSGVVGVFNCQG 615 (815)
Q Consensus 596 Lki~n~~--~~~gvig~FN~~g 615 (815)
+-||... .+.-+|++||...
T Consensus 343 ~~VW~~~l~~G~~aValfN~~~ 364 (479)
T 3lrk_A 343 IQMWSGPLDNGDQVVALLNGGS 364 (479)
T ss_dssp EEEEEEECTTSCEEEEEEECSS
T ss_pred CEEEEEECCCCCEEEEEEECCC
T ss_conf 2799999899989999997799
No 8
>3a5v_A Alpha-galactosidase; beta/alpha barrel, N-glycosylation, hydrolase; HET: MAN NAG BMA 1PG; 2.00A {Umbelopsis vinacea}
Probab=1.00 E-value=1 Score=308.57 Aligned_cols=351 Identities=16% Similarity=0.191 Sum_probs=232.2
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC---CCEEEEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCC-C
Q ss_conf 3444323432321236988899999987829999---81899816557556999854201210110111335798668-7
Q 003500 238 LDWFGWCTWDAFYTDVTAEGVDEGLKSLSAGGTP---PKFLIIDDGWQQIENKPKEESNCIVQEGAQFASRLTGIKEN-S 313 (815)
Q Consensus 238 ld~lGWCTWdafy~~vte~~I~~~l~~L~~~Gi~---~~~vIIDDGWQ~~~~~~~~~~~~~~~~~~~~~~rL~~~~~n-~ 313 (815)
..+||||||++|++++||+.|++.++.+++.|++ ++||+||||||...++. .++|.++ .
T Consensus 8 ~pp~gwnsW~~~~~~~~e~~i~~~ad~~~~~gl~~~G~~~~~iDdgW~~~~r~~-----------------~G~~~~~~~ 70 (397)
T 3a5v_A 8 TPQMGWNTWNKYGCNVDEQLILDAAKAIASSGLKDLGYNYVIIDDCWQKNERES-----------------SKTLLADPT 70 (397)
T ss_dssp SCCEEEESHHHHGGGCCHHHHHHHHHHHHHHTHHHHTCCEEECCSSCBCSSCCT-----------------TSCCCBCTT
T ss_pred CCCEEEECHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCC-----------------CCCEEECHH
T ss_conf 998899887985868899999999999997698214956999988867788788-----------------898677800
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 45543458767889599999998409983798874013665776789766333333223557899987888960311443
Q 003500 314 KFQKKCQNSEQVSGLKHVVDESKQNHNVKYVYVWHALAGYWGGVKPAADGMEHYDTALAYPVTSPGVMGNQPDIVMDSLA 393 (815)
Q Consensus 314 KFp~~~~~~~~p~GLk~lv~~Ik~~~Glk~vgvWHal~GYWgGI~P~~~~~~~y~~~~~~p~~spG~~~~~pd~a~d~~~ 393 (815)
||| +||++++++||+ +||| +|+|+.+.. + ++. ..||+
T Consensus 71 kFP---------~Gl~~l~~~i~~-~Glk-~Giw~~pg~--------------~-tc~----~~pg~------------- 107 (397)
T 3a5v_A 71 KFP---------RGIKPLVDDIHN-LGLK-AGIYSSAGT--------------L-TCG----GHIAS------------- 107 (397)
T ss_dssp TCT---------TCHHHHHHHHHH-TTCE-EEEEEESSS--------------B-CTT----SCBCC-------------
T ss_pred CCC---------CCHHHHHHHHHH-CCCE-EEEEECCCC--------------C-CCC----CCHHH-------------
T ss_conf 178---------579999999998-6997-799932898--------------7-668----87778-------------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC
Q ss_conf 25567559788999999999999851997999825540210169999800289999999999998309999389512678
Q 003500 394 VHGLGLVHPKKVFNFYNELHAYLASCGVDGVKVDVQNIIETLGAGHGGRVSLTRSYHQALEASIARNFPDNGCISCMCHN 473 (815)
Q Consensus 394 ~~G~glv~p~~a~~fy~~~~~~Las~GVD~VKvD~q~~l~~l~~~~~grv~l~~ay~~AL~~s~~r~f~g~~iI~CMs~~ 473 (815)
..|++..++++++|||||||+|+|...... +.+....+.|++|..++++.++ +|+.++|.+
T Consensus 108 ------------~~~~~~~~~~~~~wGvdyvK~D~~~~~~~~-----~~~~~~~~~y~~m~~~L~~~~~--~i~~~~c~~ 168 (397)
T 3a5v_A 108 ------------LGYEDIDAKTWAKWGIDYLKYDNCYNQGQS-----GTPKLSYDRYKAMGNALNKTGR--PMLYSLCNW 168 (397)
T ss_dssp ------------TTCHHHHHHHHHHHTCCEEEEECTTCTTCC-----SSHHHHHHHHHHHHHHHHHTCS--CCEEEECST
T ss_pred ------------HHHHHHHHHHHHHCCCCEEEECCCCCCCCC-----CCCCHHHHHHHHHHHHHHHHCC--CCEEEECCC
T ss_conf ------------888899999998759988988887677767-----8830258999999999996689--958996567
Q ss_pred C-CC--CCCCCCCCEEECCCCCCCCCCCC-------------------HHHHHHHHHHHHHHCCCCCCCCCCCCCCCC--
Q ss_conf 9-88--53455557487148658789664-------------------146888766644210589789985356788--
Q 003500 474 T-DG--IYSSKQTAVIRASDDYYPRDPAS-------------------HTIHISSVAYNTLFLGEFMQPDWDMFHSLH-- 529 (815)
Q Consensus 474 ~-~~--l~~~~~~~~~R~SDDf~p~~p~s-------------------~~~Hi~~~a~nsl~~g~~~~PDwDMF~s~h-- 529 (815)
+ +. .|..+.+++||+|+|++|.|... -...+..++..+-+.+++.|||+||+..++
T Consensus 169 G~~~~~~w~~~~~n~wR~s~Di~~~w~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~pg~~nD~Dml~vg~~~ 248 (397)
T 3a5v_A 169 GEDGPWNFASTISNSWRISGDVYDNFNRPDPACPCTTYDCVLAGFRCSVMNIINKAVAVSQKARSGGWNDLDMLEVGNGG 248 (397)
T ss_dssp TTTCHHHHSTTTCSEEECSSCBCSCSSCCCTTSCCCSSCCSCCCSCBCHHHHHHHHHHHGGGCBTTBEEECCCBCTTSSS
T ss_pred CCCCHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 77760567741074799767767764444444432333334555321299999973145763488746785220038999
Q ss_pred ---HHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCCCCEEECCC--CCCCCCCCCCCCCCCCCCCEEEEEEEC--
Q ss_conf ---1378999998833982792069999938877322089994551179--998775332347688985238998432--
Q 003500 530 ---PAAEYHGAARAVGGCAIYVSDKPGNHNFDLLRKLVLPDGSVLRAQL--PGRPTRDCLFADPARDGTSLLKVWNVN-- 602 (815)
Q Consensus 530 ---~~a~~HaaaraisGgPvyiSD~pg~hd~~lL~~Lv~pdG~ilR~~~--pg~pt~d~lf~dp~~d~~~lLki~n~~-- 602 (815)
.+.+.|+++|||+++||++|+.+.+.+-+-++-|..++ +++... .|.+-+- ++ ..+. .-||...
T Consensus 249 lt~~E~~~~~alwai~~sPL~~g~Dl~~~~~~~~~il~N~e--~iai~qd~~g~~~~~-v~----~~g~--~~vw~~~l~ 319 (397)
T 3a5v_A 249 MNQEEYRVHYTIWAALKSPLILGNDVTNITNTTKEIIMNKE--VIAVNQDSSFSPANR-IW----VKGD--QQLFSGNLA 319 (397)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEECSCSSSCCHHHHHHHCCHH--HHHHHTCTTCCCCEE-EE----EETT--EEEEEEEET
T ss_pred CCHHHHHHHHHHHHHHCCCEEECCCHHHCCHHHHHHHCCHH--HHHHCCCCCCCCCEE-EE----CCCC--CEEEEEECC
T ss_conf 89999999999999865961754760018988997733899--986344434666414-32----3898--258999979
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCEEEEEECCCE-EEECCCCCEEEEE
Q ss_conf 786137998604896100012212368999603565532651035654078988858999913555-9966999807699
Q 003500 603 KCSGVVGVFNCQGAGWCKITKKTRIHDESPGTLTASVRVTDVENMAQIAGAGWNGDAIVYAHRSGE-VVRLPKGASVPVT 681 (815)
Q Consensus 603 ~~~gvig~FN~~ga~w~~~~~~~~~~~~~~~~~s~~v~~~D~~~~~~~~~~~~~~~~vvy~~~sg~-~~~l~~~~~~~v~ 681 (815)
.+.-+||+||..... .+-.+..+++..+.. .+-...+.|.|+..-+++ +... ...++++
T Consensus 320 ~g~~~v~~~N~~~~~-----------------~~~~v~l~~lg~~~~-~~~~~~~~~~v~DlW~~~~~g~~--~~~~~~~ 379 (397)
T 3a5v_A 320 NNTQVVILLNAGDSA-----------------AKMTATWDDIWVYNL-PNVDSSRSIEVRDLWKQKSLGNF--SNHITLD 379 (397)
T ss_dssp TTEEEEEEEECSSSC-----------------EEEEEEHHHHTGGGT-TSBCTTCCEEEEETTTTEEEEEE--CSEEEEE
T ss_pred CCCEEEEEEECCCCC-----------------EEEEEEHHHHCCCCC-CCCCCCCCEEEEECCCCCCCCCC--CCEEEEE
T ss_conf 997899999779997-----------------679988999368645-56677880599987899744522--6608999
Q ss_pred ECCCCEEEEEEEEEE
Q ss_conf 427837999985642
Q 003500 682 LKVLEYELFHFCPLK 696 (815)
Q Consensus 682 L~~~~~ei~t~~Pv~ 696 (815)
|++.+..+|.+.|+.
T Consensus 380 v~~hg~~l~~l~~~~ 394 (397)
T 3a5v_A 380 VPAHGVRLLKFMDSA 394 (397)
T ss_dssp ECTTEEEEEEESSCC
T ss_pred ECCCEEEEEEEEECC
T ss_conf 998708999998257
No 9
>4do4_A Alpha-N-acetylgalactosaminidase; pharmacological chaperone, (beta/alpha)8 barrel, glycosidase carbohydrate-binding protein, glycoprotein, lysosome; HET: NAG BMA MAN DJN CIT FUC; 1.40A {Homo sapiens} PDB: 3h54_A* 3h53_A* 3igu_A* 3h55_A* 4do5_A* 4do6_A* 1ktb_A* 1ktc_A*
Probab=1.00 E-value=1 Score=303.89 Aligned_cols=345 Identities=15% Similarity=0.149 Sum_probs=226.0
Q ss_pred CCCCCCCCCCCCCCCC----------HHHHHHHHHHHHHCCCC---CCEEEEECCCCCCCCCCCCCCCHHHCCCCCCCCC
Q ss_conf 4443234323212369----------88899999987829999---8189981655755699985420121011011133
Q 003500 239 DWFGWCTWDAFYTDVT----------AEGVDEGLKSLSAGGTP---PKFLIIDDGWQQIENKPKEESNCIVQEGAQFASR 305 (815)
Q Consensus 239 d~lGWCTWdafy~~vt----------e~~I~~~l~~L~~~Gi~---~~~vIIDDGWQ~~~~~~~~~~~~~~~~~~~~~~r 305 (815)
.+|||||||+|+++++ |+.|++.++.|++.|+. ++||+||||||..++.
T Consensus 9 PpmGWnSW~~~~~~i~~~~~~~~~~se~~i~~~ad~~~~~gl~~~Gy~yv~iDdgW~~~rd~------------------ 70 (400)
T 4do4_A 9 PPMGWLAWERFRCNINCDEDPKNCISEQLFMEMADRMAQDGWRDMGYTYLNIDDCWIGGRDA------------------ 70 (400)
T ss_dssp CCEEEESHHHHTTCCCTTTCTTTSSSHHHHHHHHHHHHHSSHHHHTCCEEECCSSCEEEECT------------------
T ss_pred CCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCEEEEECCCCCCCCCC------------------
T ss_conf 99731066753646673213333341999999999999776464197699987886668788------------------
Q ss_pred CCCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5798668-745543458767889599999998409983798874013665776789766333333223557899987888
Q 003500 306 LTGIKEN-SKFQKKCQNSEQVSGLKHVVDESKQNHNVKYVYVWHALAGYWGGVKPAADGMEHYDTALAYPVTSPGVMGNQ 384 (815)
Q Consensus 306 L~~~~~n-~KFp~~~~~~~~p~GLk~lv~~Ik~~~Glk~vgvWHal~GYWgGI~P~~~~~~~y~~~~~~p~~spG~~~~~ 384 (815)
.+++.++ .||| +||++++++||+ +||| +|+|.....++ .. + + |+.
T Consensus 71 ~G~~~~d~~rFP---------~G~k~ladyih~-~Glk-~Giy~~~~~~~----c~--g---------~----~~~---- 116 (400)
T 4do4_A 71 SGRLMPDPKRFP---------HGIPFLADYVHS-LGLK-LGIYADMGNFT----CM--G---------Y----PGT---- 116 (400)
T ss_dssp TCCEEECTTTST---------TCHHHHHHHHHH-TTCE-EEEEEEBSSBC----TT--S---------C----BCB----
T ss_pred CCCEEECCCCCC---------CCCHHHHHHHHH-CCCE-EEEECCCCCCC----CC--C---------C----CCH----
T ss_conf 998857742377---------654899999987-7955-88956787765----58--9---------7----830----
Q ss_pred CCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 96031144325567559788999999999999851997999825540210169999800289999999999998309999
Q 003500 385 PDIVMDSLAVHGLGLVHPKKVFNFYNELHAYLASCGVDGVKVDVQNIIETLGAGHGGRVSLTRSYHQALEASIARNFPDN 464 (815)
Q Consensus 385 pd~a~d~~~~~G~glv~p~~a~~fy~~~~~~Las~GVD~VKvD~q~~l~~l~~~~~grv~l~~ay~~AL~~s~~r~f~g~ 464 (815)
.+ .+++...+.+++|||||||+|+|... ......++.++..+++++ ++
T Consensus 117 -----------~~---------~~~~~da~~~a~wGvdylK~D~~~~~----------~~~~~~~~~~~~~~~~~~--g~ 164 (400)
T 4do4_A 117 -----------TL---------DKVVQDAQTFAEWKVDMLKLDGCFST----------PEERAQGYPKMAAALNAT--GR 164 (400)
T ss_dssp -----------CG---------GGHHHHHHHHHHTTCCEEEEECTTCC----------HHHHHHHHHHHHHHHHHT--CS
T ss_pred -----------HH---------HHHHHHHHHHHHHCCCEEEECCCCCC----------HHHHHHHHHHHHHHHHHH--CC
T ss_conf -----------57---------69998887788758850743567687----------266654415789999982--86
Q ss_pred CEEEECCCCCC-C--------CCCCCCCCEEECCCCCCCCCCCCHHHHHH---HHHHHHHHCCCCCCCCCCCCCCCC---
Q ss_conf 38951267898-8--------53455557487148658789664146888---766644210589789985356788---
Q 003500 465 GCISCMCHNTD-G--------IYSSKQTAVIRASDDYYPRDPASHTIHIS---SVAYNTLFLGEFMQPDWDMFHSLH--- 529 (815)
Q Consensus 465 ~iI~CMs~~~~-~--------l~~~~~~~~~R~SDDf~p~~p~s~~~Hi~---~~a~nsl~~g~~~~PDwDMF~s~h--- 529 (815)
+|..+.+.... . .+....+++||+++|+++.|......+.. .+.....+.+++.|+|+||++.++
T Consensus 165 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~Di~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~d~d~l~~~~~~~ 244 (400)
T 4do4_A 165 PIAFSCSWPAYEGGLPPRVQYSLLADICNLWRNYDDIQDSWWSVLSILNWFVEHQDILQPVAGPGHWNDPDMLLIGNFGL 244 (400)
T ss_dssp CCEEEECGGGGTTSSTTTCCHHHHHHHCSEEECSCCCCSSHHHHHHHHHHHHHTHHHHGGGCBTTBEEECCCCCTTSSSC
T ss_pred CCEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 61000233411245566542111144123322137636763221217889999867766504788777875441357899
Q ss_pred --HHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCCCCEEECC--CCCCCCCCCCCCCCCCCCCCEEEEEEE--CC
Q ss_conf --137899999883398279206999993887732208999455117--999877533234768898523899843--27
Q 003500 530 --PAAEYHGAARAVGGCAIYVSDKPGNHNFDLLRKLVLPDGSVLRAQ--LPGRPTRDCLFADPARDGTSLLKVWNV--NK 603 (815)
Q Consensus 530 --~~a~~HaaaraisGgPvyiSD~pg~hd~~lL~~Lv~pdG~ilR~~--~pg~pt~d~lf~dp~~d~~~lLki~n~--~~ 603 (815)
.+.++|+++||++++|+++++.+.+.+-+-++-|..++ +++.. ..|.+.+ .++.+. ....||.. ..
T Consensus 245 t~~e~~t~~slwa~~~spL~~g~Dl~~~~~~~~~lL~N~e--via~~qd~~g~~~~-~v~~~~-----~~~~vw~~~~~~ 316 (400)
T 4do4_A 245 SLEQSRAQMALWTVLAAPLLMSTDLRTISAQNMDILQNPL--MIKINQDPLGIQGR-RIHKEK-----SLIEVYMRPLSN 316 (400)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECSCTTTCCHHHHHHHTCHH--HHHHHTCTTCCCCE-EEEECT-----TSEEEEEEECGG
T ss_pred CHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHCHH--HHHHCCCCCCCCCE-EEECCC-----CCEEEEEEECCC
T ss_conf 8899999999999972877852773328988999852946--55415422253765-843489-----842899999689
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCEEEEEECCCE-EEECCCCCEEEEEE
Q ss_conf 86137998604896100012212368999603565532651035654078988858999913555-99669998076994
Q 003500 604 CSGVVGVFNCQGAGWCKITKKTRIHDESPGTLTASVRVTDVENMAQIAGAGWNGDAIVYAHRSGE-VVRLPKGASVPVTL 682 (815)
Q Consensus 604 ~~gvig~FN~~ga~w~~~~~~~~~~~~~~~~~s~~v~~~D~~~~~~~~~~~~~~~~vvy~~~sg~-~~~l~~~~~~~v~L 682 (815)
++.+|++||..+.. +.+-.+..+++.. .....|.|+..-+++ +.....+..++++|
T Consensus 317 g~~~va~~N~~~~~----------------~~~~~~~l~~lGl-------~~~~~y~vrDlw~~~~~g~~~~~~~~~~~v 373 (400)
T 4do4_A 317 KASALVFFSCRTDM----------------PYRYHSSLGQLNF-------TGSVIYEAQDVYSGDIISGLRDETNFTVII 373 (400)
T ss_dssp GCEEEEEEECCSSS----------------CEEEEEEGGGGTC-------CTTCEEEEEETTTCCEEEEECTTCEEEEEE
T ss_pred CCEEEEEEECCCCC----------------CEEEEEEHHHCCC-------CCCCEEEEEECCCCCEECCCCCCCEEEEEE
T ss_conf 98999999878997----------------3799989899699-------989848999886896322204776699998
Q ss_pred CCCCEEEEEEEEEEEE
Q ss_conf 2783799998564220
Q 003500 683 KVLEYELFHFCPLKEI 698 (815)
Q Consensus 683 ~~~~~ei~t~~Pv~~~ 698 (815)
++.+..+|.++||+.+
T Consensus 374 ~phg~~l~~ltPvk~~ 389 (400)
T 4do4_A 374 NPSGVVMWYLYPIKNL 389 (400)
T ss_dssp CTTCEEEEEEEEEC--
T ss_pred CCCEEEEEEEEECCCC
T ss_conf 9980899999945766
No 10
>4fnq_A Alpha-galactosidase AGAB; glycoside hydrolase, hydrolase; 1.80A {Geobacillus stearothermophilus} PDB: 4fnr_A 4fnu_A* 4fnt_A* 4fns_A* 4fnp_A*
Probab=1.00 E-value=1 Score=264.82 Aligned_cols=394 Identities=13% Similarity=0.116 Sum_probs=241.6
Q ss_pred EEEEEEEEEECCCEEEEEECCCCCEEEEEEECCC----CCEECCC--CCEEEEEEECCCHHHHHHHHHH-HHHHHHHCCC
Q ss_conf 0799999801484588862589980999996499----5000245--5128999708995799999999-9999750155
Q 003500 155 TIYTVFLPLLEGQFRSALQGNENNEIEICLESGD----NAVETNQ--GLYLVYTHAGPNPFEVISQAVK-AVEKYMQTFT 227 (815)
Q Consensus 155 ~~y~v~Lpl~~g~~ra~L~~~~~~~l~i~~esg~----~~~~~~~--~~~~v~v~~g~dp~~~i~~A~~-~v~~~l~t~~ 227 (815)
.+|.+.|..+ |+++..+..+..+...+...-.. -..++.+ .++.+++..+++.++.+.++++ .+|.++...+
T Consensus 245 ~~~~~~l~~s-Gn~~~~~e~~~~~~~~~~~G~~~~~~~~~L~pGesf~tp~~~~~~s~~g~~~~s~~~h~~~r~~~~~~~ 323 (729)
T 4fnq_A 245 EVYGFSFVYS-GNFLAQVEVDQFHTARVSMGINPFDFTWLLQPGESFQTPEVVMVYSDQGLNGMSQTYHELYRTRLARGA 323 (729)
T ss_dssp CEEEEEECCS-SCEEEEEEECTTCCEEEEEEECCTTCCEEECTTCEEECCCEEEEEESBHHHHHHHHHHHHHHHHTSCST
T ss_pred EEEEEEEECC-CCCEEEEEECCCCCEEEEEEECCCCCCEEECCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 5899988038-974199999689978999851478886797898989802799999749778999999999997327886
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHCCCCCCCCCCC
Q ss_conf 32225587733444323432321236988899999987829999818998165575569998542012101101113357
Q 003500 228 HREKKKLPSFLDWFGWCTWDAFYTDVTAEGVDEGLKSLSAGGTPPKFLIIDDGWQQIENKPKEESNCIVQEGAQFASRLT 307 (815)
Q Consensus 228 ~~~~k~~P~~ld~lGWCTWdafy~~vte~~I~~~l~~L~~~Gi~~~~vIIDDGWQ~~~~~~~~~~~~~~~~~~~~~~rL~ 307 (815)
. ..+++ +++||||++||+++||++|++.++.+++.|+. +|+||||||..+++.. ..++
T Consensus 324 ~-~~~~r-----Pv~~NsW~a~~~d~~e~~i~~~ad~aa~lG~e--~fviDDGWf~~r~~d~--------------~~lG 381 (729)
T 4fnq_A 324 F-RDRER-----PILINNWEATYFDFNEEKLVNIAKTEAELGIE--LFVLDDGWFGKRDDDR--------------RSLG 381 (729)
T ss_dssp T-TTSCC-----CCEEECSTTTTTCCCHHHHHHHHHHHHHHTCC--EEEECSCCBTTCCSTT--------------SCTT
T ss_pred C-CCCCC-----EEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC--EEEECCEEECCCCCCC--------------CCCC
T ss_conf 4-45686-----36970655542258989999999999863862--9997662455789886--------------5677
Q ss_pred CCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98668-74554345876788959999999840998379887401366577678976633333322355789998788896
Q 003500 308 GIKEN-SKFQKKCQNSEQVSGLKHVVDESKQNHNVKYVYVWHALAGYWGGVKPAADGMEHYDTALAYPVTSPGVMGNQPD 386 (815)
Q Consensus 308 ~~~~n-~KFp~~~~~~~~p~GLk~lv~~Ik~~~Glk~vgvWHal~GYWgGI~P~~~~~~~y~~~~~~p~~spG~~~~~pd 386 (815)
+|.++ .||| +||++++++||+ +||| +|+|.++ +.+.|+++..+............+.... ..
T Consensus 382 dW~~d~~kFP---------~Glk~Lad~vh~-~Gmk-fGLW~ep----e~v~~~S~l~~~hPdw~~~~~~~~~~~~--r~ 444 (729)
T 4fnq_A 382 DWIVNRRKLP---------NGLDGLAKQVNE-LGMQ-FGLWVEP----EMVSPNSELYRKHPDWCLHVPNRPRSEG--RN 444 (729)
T ss_dssp CCSBCTTTCT---------THHHHHHHHHHH-TTCE-EEEEECT----TEECSSSHHHHHCGGGBCCCTTSCCCCB--TT
T ss_pred CEEECHHHCC---------CCHHHHHHHHHH-CCCE-EEEEEEC----CCCCCCCHHHHHCCHHEECCCCCCCCCC--CC
T ss_conf 6777766667---------309999999997-8988-9999633----6418986888759362022676687357--76
Q ss_pred CEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHCCCCC-CC--C----HHHHHHHHHHHHHHHHH
Q ss_conf 03114432556755978899999999999985199799982554021016999-98--0----02899999999999983
Q 003500 387 IVMDSLAVHGLGLVHPKKVFNFYNELHAYLASCGVDGVKVDVQNIIETLGAGH-GG--R----VSLTRSYHQALEASIAR 459 (815)
Q Consensus 387 ~a~d~~~~~G~glv~p~~a~~fy~~~~~~Las~GVD~VKvD~q~~l~~l~~~~-~g--r----v~l~~ay~~AL~~s~~r 459 (815)
...+++.+|+....+++.+.+.+++|||||||+|+|..+...+... .. . ....+++++.+++ +.+
T Consensus 445 -------q~~LD~~~P~v~~y~~~~i~~ll~~~GidYiK~D~n~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~d~-L~~ 516 (729)
T 4fnq_A 445 -------QLVLDYSREDVCDYIIETISNVLASAPITYVKWDMNRHMTEIGSSALPPERQRETAHRYMLGLYRVMDE-MTS 516 (729)
T ss_dssp -------BEEBCTTSHHHHHHHHHHHHHHHTTTTCCEEEEECCCCCCSCCCTTSCGGGGGGHHHHHHHHHHHHHHH-HHH
T ss_pred -------CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHH
T ss_conf -------420167776689999999999998779878997478787767787888233205799999999999999-998
Q ss_pred CCCCCCEEEECCCCCCC-CCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHC--CCC--CCCCCCCCCCCCHHHHH
Q ss_conf 09999389512678988-53455557487148658789664146888766644210--589--78998535678813789
Q 003500 460 NFPDNGCISCMCHNTDG-IYSSKQTAVIRASDDYYPRDPASHTIHISSVAYNTLFL--GEF--MQPDWDMFHSLHPAAEY 534 (815)
Q Consensus 460 ~f~g~~iI~CMs~~~~~-l~~~~~~~~~R~SDDf~p~~p~s~~~Hi~~~a~nsl~~--g~~--~~PDwDMF~s~h~~a~~ 534 (815)
.|++.-+.+|-+..... .....+.+.++.||+..+.+ +..|.. .++++. ... +.+|.++.+++. ....
T Consensus 517 ~~P~i~ie~C~~Gg~r~d~~~l~~~~~~w~SD~~d~~~----r~~i~~--g~s~~~p~~~~g~hv~~~~~~~~gr-~t~~ 589 (729)
T 4fnq_A 517 RFPHILFESCSGGGGRFDPGMLYYMPQTWTSDNTDAVS----RLKIQY--GTSLVYPISAMGAHVSAVPNHQVGR-VASL 589 (729)
T ss_dssp HCTTCEEEEEBTBBTTCSHHHHTTSSEEECBSCCCHHH----HHHHHH--HHTTTSCGGGEEEEEECSSCSSSCC-CCCH
T ss_pred HCCCCEEECCCCCCCCCCCHHHHCCCCEEECCCCCHHH----HHHHHH--CHHCCCCCHHCCCCCCCCCCCCCCC-CCHH
T ss_conf 78895887156888986650650366411567740677----899873--6010368031535766873467767-1459
Q ss_pred HHHHHHHCCCCEEEECCCCCC---CHHHHHHHCC---------CCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 999988339827920699999---3887732208---------9994551179998775332347688985238998432
Q 003500 535 HGAARAVGGCAIYVSDKPGNH---NFDLLRKLVL---------PDGSVLRAQLPGRPTRDCLFADPARDGTSLLKVWNVN 602 (815)
Q Consensus 535 HaaaraisGgPvyiSD~pg~h---d~~lL~~Lv~---------pdG~ilR~~~pg~pt~d~lf~dp~~d~~~lLki~n~~ 602 (815)
+..+++.+.||+.++..+.+. ..++||+.+. ..|.+.|...|- .+.....-.-+-+
T Consensus 590 e~r~~~al~g~l~~~~dl~~ls~e~~~~lk~~Ia~yK~~r~li~~G~~~rl~~p~------------~~~~~~~~~v~~d 657 (729)
T 4fnq_A 590 KARGHVAMSGNFGYELDITKLTETEKQMIKQQVAFYKDVRRLVQFGTFYRLLSPF------------EGNEAAWMFVSAD 657 (729)
T ss_dssp HHHHHHHTTSEEEEESCGGGCCHHHHHHHHHHHHHHHHHHHHHHHSEEEEEECTT------------SSSEEEEEEECTT
T ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCC------------CCCEEEEEEECCC
T ss_conf 9999999875312163714599999999999999999877987372099248999------------9982799999789
Q ss_pred CCCCEEEEEEECC
Q ss_conf 7861379986048
Q 003500 603 KCSGVVGVFNCQG 615 (815)
Q Consensus 603 ~~~gvig~FN~~g 615 (815)
+..+|+.+||...
T Consensus 658 ~~~avv~~~~~~~ 670 (729)
T 4fnq_A 658 RSEALVAYFRVLA 670 (729)
T ss_dssp SSEEEEEEEEEEE
T ss_pred CCEEEEEEEECCC
T ss_conf 9989999996678
Done!