BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003501
(815 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SXY0|FAS1_ARATH Chromatin assembly factor 1 subunit FAS1 OS=Arabidopsis thaliana
GN=FAS1 PE=1 SV=1
Length = 815
Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/810 (54%), Positives = 573/810 (70%), Gaps = 37/810 (4%)
Query: 1 MADTTTMSNVEDR-----PSKTLKRKR---AWPALTGEDKESRIRRFNEEVKWLFGYYKE 52
M + +T++ E+R P K KRKR A LT E+KES+I N E+K LF Y++E
Sbjct: 1 MDEVSTVNENENRKTMIEPKKLNKRKREPTAIENLTSEEKESQISSLNLEMKGLFDYFRE 60
Query: 53 MITNQR---LTIDLSECAGSLNGMVAALMEESELPLTKLVEEIHVKLKENGSEKLGVGLA 109
++ + L SEC+ SLN MVA LMEE LPL+KLV+EI++KLKE V +
Sbjct: 61 VMDKSKRTDLFSGFSECS-SLNSMVALLMEEMSLPLSKLVDEIYLKLKEKTE---SVTMV 116
Query: 110 AVKSAVLFVGQRVMYGVSNADTDILEDDAEASLWCWETRDVKLLPKSVRGSLRIRRTFRK 169
AVKSAV+ VGQRV YGV N D D+LEDD+E+ LWCWETRD+K++P SVRG L++RRT RK
Sbjct: 117 AVKSAVVSVGQRVSYGVLNVDADVLEDDSESCLWCWETRDLKIMPSSVRGVLKLRRTCRK 176
Query: 170 KIHERITAVSAMITALQKSESDPSFINDLMKASKKLGKVLSEASIRVLVDSMLKKNGAEI 229
KIHERITAVSAM+ ALQ+ E++ + +DL KA++KLGK+LSE IR +D+M++KN +E+
Sbjct: 177 KIHERITAVSAMLAALQREETEKLWRSDLSKAAEKLGKILSEVDIRSFMDNMMQKNSSEM 236
Query: 230 VEKDAKREEKILIKQLEKNKREVEKEKKRMDCEQQKEKLHSERELKRLQEEAERDERRRE 289
EKD+KREEK+L+KQLEKN+ E EKEKKRM+ + KEKL E+E K LQ +A DE +E
Sbjct: 237 AEKDSKREEKLLLKQLEKNRCEAEKEKKRMERQVLKEKLQQEKEQKLLQ-KAIVDENNKE 295
Query: 290 KEEADIRKQIRKQQEEADKEQRHREKEEAEMKKKLALQKQASMMERFLKRSKILTSCQND 349
KEE + RK+I+KQQ+E++KEQ+ REKE+AE+KK+L +QKQAS+MERFLK+SK + Q
Sbjct: 296 KEETESRKRIKKQQDESEKEQKRREKEQAELKKQLQVQKQASIMERFLKKSKDSSLTQPK 355
Query: 350 ESSPRAITSVLLSKNSEQLPEAVTKLVDSTLSSNDEINIDDIRRSHLSSWHRFGHFVRSN 409
S L E V + +D+ S+ E +DDIRR H +SW + GH + S+
Sbjct: 356 LPSSEVTAQELSCTKHENEIGKVVQAIDNAFSTTCEATVDDIRREHFASWRQLGHLLSSS 415
Query: 410 RNQHWGIRRKPKTELFKELKL-TNRGLGHDDDLSMERSEDRCEAQTVDDKSCITSSDSSS 468
+ +HWG+RR+PK+ELF +LKL TN G+ D + +ME+ D CE D + C SSS
Sbjct: 416 K-KHWGMRRQPKSELFPKLKLSTNSGVTSDGEPNMEKQGDGCEENNFDGRQC---KPSSS 471
Query: 469 AITKCKRWKQLLQFDKSHRPAFYGIWPKKSHIVGPRHPLMKDPDLDYDIDSDEEWEEEEP 528
K +R KQLLQFDKS RP FYGIWP +S +V PR PL KDP+LDY++DSDEEWEEEE
Sbjct: 472 NRKKSRRVKQLLQFDKSCRPGFYGIWPSQSQVVKPRRPLQKDPELDYEVDSDEEWEEEEA 531
Query: 529 GESLSDCEKDGD---EEGCSKADDEDESEDGFFVPDGYLSEDEGVQVDRMEIDLSAEDTK 585
GESLSDCEKD D EEGCSKADDED+SED F VPDGYLSEDEGVQVDRM+ID S +D
Sbjct: 532 GESLSDCEKDEDESLEEGCSKADDEDDSEDDFMVPDGYLSEDEGVQVDRMDIDPSEQDAN 591
Query: 586 SSPSYKQELESKESCALVRQRKYLSSLTEQALQKNQPLIILNLMHEKVPLLMAEDLSGTS 645
++ S KQ+ ES E CAL++Q+K+L +LT+ AL+K QPLII NL HEKV LL A+DL GT
Sbjct: 592 TT-SSKQDQESPEFCALLQQQKHLQNLTDHALKKTQPLIICNLTHEKVSLLAAKDLEGTQ 650
Query: 646 NMEQKCLQALSIRPFPGDLHVEITV-DIMDDENEKDCLSNGKGS------TTLISESDLP 698
+EQ CL+AL +R FP +EI++ DI D++ E S + + +I +SDL
Sbjct: 651 KVEQICLRALMVRQFPWSSLIEISINDIQDEDQEASKFSCSQSTPPSNSKAKIIPDSDLL 710
Query: 699 AIVSVIQSCSTNMNKILEALQQKFPSISRAQLRNKVREISDFNFAENRWQVKREILIELG 758
+VS IQSCS +N+++E LQQKFP + + +LR KVREISDF ++RWQVK+E+L +LG
Sbjct: 711 TVVSTIQSCSQGINRVVETLQQKFPDVPKTKLRQKVREISDFE--DSRWQVKKEVLTKLG 768
Query: 759 Y--SPDKNGGR-AKGIATFFSKRCLPPDGK 785
SPDK G R K I+TFFSKRCLPP K
Sbjct: 769 LSPSPDKGGKRLPKTISTFFSKRCLPPSTK 798
>sp|B2ZX90|FAS1_ORYSJ Chromatin assembly factor 1 subunit FSM OS=Oryza sativa subsp.
japonica GN=FSM PE=2 SV=1
Length = 940
Score = 541 bits (1394), Expect = e-153, Method: Compositional matrix adjust.
Identities = 365/843 (43%), Positives = 517/843 (61%), Gaps = 94/843 (11%)
Query: 16 KTLKRKRA--WPALTGEDKESRIRRFNEEVKWLFGYYKEMITNQRLTIDLSECAGSLNGM 73
K LKRKRA PAL DK++ + +E++ L YY+E ++ R+ ++ S N
Sbjct: 82 KQLKRKRASSGPALAAADKDALVAGCCQELEGLLEYYRE-VSGHRMQFEVGNL--STNAA 138
Query: 74 VAALMEESELPLTKLVEEIHVKLKENGSEKLGVGLAAVKSAVLFVGQRVMYGVSNADTDI 133
+ L+EES L L+KLV+EI+ KLK G E GV +V+S+VL +GQR+MYG S+ D D+
Sbjct: 139 IGCLLEESSLGLSKLVDEIYEKLK--GME--GVSATSVRSSVLLIGQRMMYGQSSPDADV 194
Query: 134 LEDDAEASLWCWETRDVKLLPKSVRGSLRIRRTFRKKIHERITAVSAMITALQKSESDPS 193
LED++E +LWCWE RD+K++P +RG L RRT RKKIHERITA+ + ++ L+ ++ +
Sbjct: 195 LEDESETALWCWEVRDLKVIPLRMRGPLSTRRTARKKIHERITAIYSTLSVLEAPGAE-A 253
Query: 194 FINDLMKASKKLGKVLSEASIRVLVDSMLKKN----GAEIVEKDAKREEKILIK------ 243
+ND+ KAS KL K L+ I+ LV+ +K+ GA+ AK + ++K
Sbjct: 254 QVNDMRKASLKLSKALNLEGIKSLVERATQKSNIERGAKNTGSTAKEPMQEMVKSNNDTG 313
Query: 244 --------QLEKNKREVEKEKK------------------RMDCEQQKEKLHSERELKR- 276
QL+KN EK+ + RM +Q+K++ + RE KR
Sbjct: 314 IIENVDDSQLQKNTSTNEKDTQKAQKQVEKELKQKEKEEARMRKQQKKQQEEALREQKRR 373
Query: 277 -------------LQEEAERDERRREKEEADIRKQIRKQQEEADKEQRHREKEEAEMKKK 323
+EEA+++++RREKEEA+ RKQ +KQQEEA+KEQ+ REKE ++KK+
Sbjct: 374 EKEEAEMKKQQRKQEEEAQKEQKRREKEEAETRKQQKKQQEEAEKEQKRREKEAVQLKKQ 433
Query: 324 LALQKQASMMERFLKRSKILTSCQNDESSPRAI-TSVLLSKNSEQLPEAVTKLVDSTLSS 382
LA+QKQASMMERF K K + + T+ + N E +P VT ++DS+ S
Sbjct: 434 LAIQKQASMMERFFKNKKDSEKLEKPGGKDSGVQTTDPCTTNKEVVP-LVTSIIDSSFSQ 492
Query: 383 NDEINIDDIRRSHLSSWHRFGHFVRSNRNQHWGIRRKPKTELFKELKLTNRG-------L 435
+ ++D+RR +S W + + RS+R WGIR KPK E FKELKL L
Sbjct: 493 KENWALEDLRRLQISGWQKLSSYNRSSR---WGIRNKPKKEAFKELKLQKTSDNMLEEIL 549
Query: 436 GHDDD----LSMERSEDRCEAQTVDDKSCIT----SSDSSSAITKCKRWKQLLQFDKSHR 487
++D LS E D+ A VD + ++ ++ + ++LLQFDKS+R
Sbjct: 550 SPNEDTCHNLSQENEPDKS-ANDVDMLPAVELQFHGTNHANPLPTRSIKRKLLQFDKSNR 608
Query: 488 PAFYGIWPKKSHIVGPRHPLMKDPDLDYDIDSDEEWEEEEPGESLSDCEKDGDE--EGCS 545
PA+YG W KKS +VGPR PL DPDLDY++DSD+EWEEE+PGESLSDCEKD DE E S
Sbjct: 609 PAYYGTWRKKSAVVGPRCPLKMDPDLDYEVDSDDEWEEEDPGESLSDCEKDNDEVMEEDS 668
Query: 546 KADDEDESEDGFFVPDGYLSEDEGVQVDRMEIDLSAEDTKSSPSYKQELESKESCALVRQ 605
K DE ESED FFVPDGYLS++EG+Q++ + L +D SS Q E +E AL+RQ
Sbjct: 669 KITDE-ESEDSFFVPDGYLSDNEGIQIESL---LDDKDEASSSPPDQCAEVEEFRALLRQ 724
Query: 606 RKYLSSLTEQALQKNQPLIILNLMHEKVPLLMAEDLSGTSNMEQKCLQALSIRPFPGDLH 665
+K L++LTEQAL+K+QPL+I NL HEK LL A DL GTS +EQ CLQ LS+R PG
Sbjct: 725 QKVLNTLTEQALRKSQPLVISNLTHEKAELLTAGDLKGTSKIEQLCLQVLSMRICPGGAT 784
Query: 666 VEITVDIMDDENEKDC----LSNGKGSTTLISESDLPAIVSVIQSCSTNMNKILEALQQK 721
+++ V N ++ + + + + I ++DL IV VI SC +NK++E+L QK
Sbjct: 785 IDLPVIDSSSANAEETNQLNVKSSPAAASAIPDTDLAEIVKVIGSCRDGINKLVESLHQK 844
Query: 722 FPSISRAQLRNKVREISDFNFAENRWQVKREILIELGY-SPDKNGGRAKGIATFFSKRCL 780
FP++S++QL+NKVREIS+ F +NRWQVK+E+L +LG S + + K IAT+FSKRCL
Sbjct: 845 FPNVSKSQLKNKVREISE--FVDNRWQVKKEVLSKLGLSSSPASSKKPKSIATYFSKRCL 902
Query: 781 PPD 783
PP+
Sbjct: 903 PPE 905
>sp|A0JMT0|CA1AB_XENLA Chromatin assembly factor 1 subunit A-B OS=Xenopus laevis
GN=chaf1a-b PE=2 SV=2
Length = 885
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 70/94 (74%), Gaps = 3/94 (3%)
Query: 478 QLLQFDKSHRPAFYGIWPKKSHIVGPRHPLMKDPD-LDYDIDSDEEWEEEEPGESLSDCE 536
+LLQF ++HRPA++G K+S ++ PR P +D D LDY++DSDEEWEEEEPGESLS E
Sbjct: 496 KLLQFCENHRPAYWGTSNKRSRVINPRKPWAQDTDMLDYEVDSDEEWEEEEPGESLSHSE 555
Query: 537 KDGDEEGCSKADDEDESEDGFFVPDGYLSEDEGV 570
G+ E ++EDE +DGFFVP GYLS DEGV
Sbjct: 556 --GENEDDDPKEEEDEDDDGFFVPHGYLSNDEGV 587
>sp|Q5R1T0|CAF1A_CHICK Chromatin assembly factor 1 subunit A OS=Gallus gallus GN=CHAF1A
PE=1 SV=1
Length = 937
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/94 (55%), Positives = 70/94 (74%), Gaps = 6/94 (6%)
Query: 478 QLLQFDKSHRPAFYGIWPKKSHIVGPRHPLMKDPD-LDYDIDSDEEWEEEEPGESLSDCE 536
+LLQF ++HRPA++G W KK+ ++ PR+P KD LDY++DSDEEWEEEEPGESLS E
Sbjct: 534 KLLQFCENHRPAYWGTWNKKTTMIRPRNPWSKDSKLLDYEVDSDEEWEEEEPGESLSHSE 593
Query: 537 KDGDEEGCSKADDEDESEDGFFVPDGYLSEDEGV 570
D + ++++ +DGFF+P GYLSEDEGV
Sbjct: 594 GDD-----EEEGEDEDDDDGFFIPHGYLSEDEGV 622
>sp|A6QLA6|CAF1A_BOVIN Chromatin assembly factor 1 subunit A OS=Bos taurus GN=CHAF1A PE=2
SV=1
Length = 964
Score = 70.1 bits (170), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/94 (57%), Positives = 70/94 (74%), Gaps = 5/94 (5%)
Query: 478 QLLQFDKSHRPAFYGIWPKKSHIVGPRHPLMKDPD-LDYDIDSDEEWEEEEPGESLSDCE 536
+LLQF ++HRPA++G W KK+ ++ PR P +D D LDY++DSDEEWEEEEPGESLS E
Sbjct: 560 KLLQFSENHRPAYWGTWNKKTTVIRPRDPWAQDRDLLDYEVDSDEEWEEEEPGESLSHSE 619
Query: 537 KDGDEEGCSKADDEDESEDGFFVPDGYLSEDEGV 570
D D ++++ +DGFFVP GYLSEDEGV
Sbjct: 620 GDDD----DDVGEDEDEDDGFFVPHGYLSEDEGV 649
>sp|Q98TA5|CA1AA_XENLA Chromatin assembly factor 1 subunit A-A OS=Xenopus laevis
GN=chaf1a-a PE=2 SV=1
Length = 896
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 90/149 (60%), Gaps = 20/149 (13%)
Query: 478 QLLQFDKSHRPAFYGIWPKKSHIVGPRHPLMKDPD-LDYDIDSDEEWEEEEPGESLSDCE 536
+LLQF ++HRPA++G ++S ++ R P +D LDY++DSDEEWEEEEPGESLS E
Sbjct: 511 KLLQFCENHRPAYWGTCNRRSRVINSRKPWAQDTGMLDYEVDSDEEWEEEEPGESLSHSE 570
Query: 537 KDGDEEGCSKADDEDESEDGFFVPDGYLSEDEGVQVDRMEIDLSAEDTKSSPSYKQELES 596
+ D ++DE +DGFFVP GYLS+DEGV D D ++ ++Q+L++
Sbjct: 571 GEND----DDPKEDDEDDDGFFVPHGYLSDDEGVS------DEECTDPENQ-KFRQKLKA 619
Query: 597 KESCALVRQRKYLSSLTEQALQKNQPLII 625
KE L K + ++ QP++I
Sbjct: 620 KEWYELQTNGKKIRAM--------QPVVI 640
>sp|Q9QWF0|CAF1A_MOUSE Chromatin assembly factor 1 subunit A OS=Mus musculus GN=Chaf1a
PE=1 SV=1
Length = 911
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/140 (48%), Positives = 86/140 (61%), Gaps = 16/140 (11%)
Query: 432 NRGLGHDDDLSMERSEDRCEAQTVDDKSCITSSDSSSAITKCKRWKQLLQFDKSHRPAFY 491
R GHD D+ M R E+ V D S K R K LLQF ++HRPA++
Sbjct: 502 TRVCGHDTDI-MNRDVVIVESSKV---------DGVSERKKFGRMK-LLQFSENHRPAYW 550
Query: 492 GIWPKKSHIVGPRHPLMKDPD-LDYDIDSDEEWEEEEPGESLSDCEKDGDEEGCSKADDE 550
G W KK+ I+ PR+P +D D LDY++DSD+EWEEEEPGESLS E D D ++
Sbjct: 551 GTWNKKTAIIRPRNPWAQDKDLLDYEVDSDDEWEEEEPGESLSHSEGDED----DDVGED 606
Query: 551 DESEDGFFVPDGYLSEDEGV 570
++ +DGFFVP GYLSEDEGV
Sbjct: 607 EDEDDGFFVPHGYLSEDEGV 626
>sp|A0JMK9|CAF1A_DANRE Chromatin assembly factor 1 subunit A OS=Danio rerio GN=chaf1a PE=1
SV=1
Length = 863
Score = 63.9 bits (154), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 68/97 (70%), Gaps = 5/97 (5%)
Query: 478 QLLQFDKSHRPAFYGIWPKKSHIVGPRHPLMKDPD-LDYDIDSDEEWEEEEPGESLSDCE 536
+LL F ++RPA++G W KKS + PR PL D D LDY++DSDEEWEEEEPGESLS E
Sbjct: 472 KLLHFHDNYRPAYWGTWSKKSTHISPRCPLRLDKDLLDYEVDSDEEWEEEEPGESLSHSE 531
Query: 537 KDGDEEGCSKADDEDESEDGFFVPDGYLSEDEGVQVD 573
D D +A ++D+ +DGFFVP GYLSE EG D
Sbjct: 532 GDDD----DEAGEDDDDDDGFFVPHGYLSEGEGALED 564
>sp|Q13111|CAF1A_HUMAN Chromatin assembly factor 1 subunit A OS=Homo sapiens GN=CHAF1A
PE=1 SV=2
Length = 956
Score = 63.2 bits (152), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/94 (55%), Positives = 68/94 (72%), Gaps = 5/94 (5%)
Query: 478 QLLQFDKSHRPAFYGIWPKKSHIVGPRHPLMKDPD-LDYDIDSDEEWEEEEPGESLSDCE 536
+LLQF ++HRPA++G W KK+ ++ R P +D LDY++DSDEEWEEEEPGESLS E
Sbjct: 558 KLLQFCENHRPAYWGTWNKKTALIRARDPWAQDTKLLDYEVDSDEEWEEEEPGESLSHSE 617
Query: 537 KDGDEEGCSKADDEDESEDGFFVPDGYLSEDEGV 570
D D ++++ +DGFFVP GYLSEDEGV
Sbjct: 618 GDDD----DDMGEDEDEDDGFFVPHGYLSEDEGV 647
>sp|Q9VMA7|TGO1_DROME Transport and Golgi organization protein 1 OS=Drosophila
melanogaster GN=Tango1 PE=1 SV=2
Length = 1430
Score = 42.7 bits (99), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 120/255 (47%), Gaps = 38/255 (14%)
Query: 164 RRTFRKKIHERITAVSAMITALQKSESDPSFINDLMKASKKLGKVLSEASIRVLVDSMLK 223
R KI+E I VSA I A P+ +N + S+A I+ +S++
Sbjct: 410 RTIVEDKINEEIVPVSAKIQA------KPATVNPTEPIVAQ-----SDAEIKAPSESVIS 458
Query: 224 KNG-AEIVEKDAKREEKILIKQL--EKNKREVEKEKKRMDCEQQKEKLHSERE------- 273
A +VE+ ++ + + + L +KN K++ EQ+K++L +E E
Sbjct: 459 STTPAPVVEEAPQKADPVGLPPLFEKKNFENPNNYYKQLQEEQEKQRLVAEAEEQKRLQE 518
Query: 274 ----LKRLQEEAERDERRREKEEADIRKQIRKQQEEADKEQRHREKEEAEMKKKLALQKQ 329
KRLQEEA ++R E+ E Q ++ QEEA EQ+ R +EEAE+ K+L ++
Sbjct: 519 EADQQKRLQEEAALNKRLLEEAE-----QQKRLQEEA--EQQKRLQEEAELNKRLL--EE 569
Query: 330 ASMMERFLKRSKILTSCQNDESSPRAITSVLLSKNSEQLPEAVTKLVDSTLSSNDEINID 389
A +R + S+ L ++E+ P+ + N +QL ++V + + +N+ +
Sbjct: 570 AEKQKRLHEESEQLQRS-SEEAEPQL---SVQEANMQQLNDSVDSQSNEIVDNNNRQQPE 625
Query: 390 DIRRSHLSSWHRFGH 404
++ H + F H
Sbjct: 626 QYQQHHHHTESAFNH 640
>sp|B8I1Z8|MUTS2_CLOCE MutS2 protein OS=Clostridium cellulolyticum (strain ATCC 35319 /
DSM 5812 / JCM 6584 / H10) GN=mutS2 PE=3 SV=1
Length = 792
Score = 38.9 bits (89), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 19/115 (16%)
Query: 217 LVDSMLKKNGAEIVEKDAKREEKILIKQLEKNKREVEKEKKRM------------DCEQQ 264
L D +++++ + ++D + E+ +L +EKN+ E EKEK R D E Q
Sbjct: 499 LTDDIIERSKEFLSQEDIRFEDILL--SIEKNRSEAEKEKMRAESYRQEAERLKKDLEDQ 556
Query: 265 KEKLHS--ERELKRLQEEAER---DERRREKEEADIRKQIRKQQEEADKEQRHRE 314
K +L + E EL++ +EEA R D +R+ E K++ K+QEEA+ ++ E
Sbjct: 557 KRRLAAQKESELRKAREEARRILTDSKRQADELVSEMKRLAKEQEEAEVRRQTEE 611
>sp|Q75JP5|Y2471_DICDI Calponin homology domain-containing protein DDB_G0272472
OS=Dictyostelium discoideum GN=DDB_G0272472 PE=4 SV=1
Length = 1508
Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 74/117 (63%), Gaps = 3/117 (2%)
Query: 228 EIVEKDAKREEK-ILIKQLEKNKREVEKEKKRMDCEQQKEKLHSERELKRLQEEAERDER 286
E +EK+A EEK I ++LEK + E E E+KR+ + ++++L E E KR+ ++ ER
Sbjct: 778 ERLEKEAAAEEKRIAAEKLEKQRLEKEAEEKRIAQDLERKRLEKEAEEKRIAQDLERKRL 837
Query: 287 RREKEEADI-RKQIRKQQEEADKEQRHREKEEAEMKKKLALQKQASMMERFLKRSKI 342
+E EE I +++++QQE A K ++ R ++EAE +K++A +K+ + R + KI
Sbjct: 838 EKEAEEKRIAAEKLKQQQELAAKLEKERLEKEAE-EKRIAQEKRIAEENRIAQEKKI 893
>sp|Q9Z0R6|ITSN2_MOUSE Intersectin-2 OS=Mus musculus GN=Itsn2 PE=1 SV=2
Length = 1659
Score = 37.0 bits (84), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
Query: 232 KDAKREEKILIKQLEKNKREVEKEKKRMDCEQ-QKEKLHSE--RELKRLQEEAERDERRR 288
+++ +++ ++QL K KR+ KE +R EQ QK+KL E R+ K+ +E R+ R+
Sbjct: 625 RESYNTQQLALEQLHKIKRDKLKEIERKRLEQIQKKKLEDEAARKAKQGKENLWRESIRK 684
Query: 289 EKEEADIRKQIRKQQEEADKEQRHREKEEAEMKKKLA 325
E+EE R Q K Q++ +E+R E +++E L
Sbjct: 685 EEEEKQKRLQEEKSQDKTQEEERKAEAKQSETASALV 721
>sp|Q8SX83|SPEN_DROME Protein split ends OS=Drosophila melanogaster GN=spen PE=1 SV=2
Length = 5560
Score = 33.1 bits (74), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 41/58 (70%), Gaps = 2/58 (3%)
Query: 262 EQQKEKLHSERELKRLQEEAERDERRREKEEADIRKQIRKQQEEADKEQRHREKEEAE 319
++QKEK E++L R +E+ ERD R +E + D+R++ +++E+ +KE HREK++ E
Sbjct: 1998 KEQKEKEIREKDL-REKEQRERDNREKELRDKDLREKEMREKEQREKE-LHREKDQRE 2053
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 300,535,933
Number of Sequences: 539616
Number of extensions: 13509791
Number of successful extensions: 163813
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1750
Number of HSP's successfully gapped in prelim test: 3780
Number of HSP's that attempted gapping in prelim test: 77507
Number of HSP's gapped (non-prelim): 41202
length of query: 815
length of database: 191,569,459
effective HSP length: 126
effective length of query: 689
effective length of database: 123,577,843
effective search space: 85145133827
effective search space used: 85145133827
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)