Query 003501
Match_columns 815
No_of_seqs 181 out of 236
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 00:38:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003501.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003501hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4364 Chromatin assembly fac 100.0 1E-96 2E-101 820.6 14.5 767 13-795 18-804 (811)
2 PF12253 CAF1A: Chromatin asse 99.9 7.3E-28 1.6E-32 210.9 5.6 62 477-538 1-64 (77)
3 KOG4363 Putative growth respon 99.1 3.7E-11 8E-16 125.1 3.6 232 474-759 10-259 (270)
4 PF11600 CAF-1_p150: Chromatin 98.7 6.1E-07 1.3E-11 93.0 15.9 106 232-342 83-191 (216)
5 KOG4364 Chromatin assembly fac 98.3 1.7E-05 3.8E-10 92.0 17.0 126 263-408 294-432 (811)
6 PF15539 CAF1-p150_C2: CAF1 co 98.2 3.7E-06 7.9E-11 89.1 7.0 68 692-759 67-166 (292)
7 PF11600 CAF-1_p150: Chromatin 97.2 0.0049 1.1E-07 64.2 13.6 103 242-344 82-190 (216)
8 PTZ00266 NIMA-related protein 97.1 0.011 2.5E-07 73.7 16.4 8 37-44 57-64 (1021)
9 PTZ00266 NIMA-related protein 96.1 0.076 1.7E-06 66.6 14.8 9 732-740 921-929 (1021)
10 PTZ00121 MAEBL; Provisional 95.0 1.7 3.8E-05 55.9 20.3 21 32-52 939-959 (2084)
11 KOG0163 Myosin class VI heavy 94.4 2.1 4.6E-05 52.1 18.3 12 167-178 828-839 (1259)
12 KOG0163 Myosin class VI heavy 94.3 2.4 5.2E-05 51.7 18.5 17 303-319 990-1006(1259)
13 KOG1029 Endocytic adaptor prot 94.3 0.96 2.1E-05 54.9 15.3 13 80-93 223-235 (1118)
14 KOG2412 Nuclear-export-signal 94.0 1.3 2.7E-05 52.2 15.1 36 77-112 18-56 (591)
15 KOG1029 Endocytic adaptor prot 93.9 2.2 4.7E-05 52.1 17.1 12 214-225 332-343 (1118)
16 KOG3054 Uncharacterized conser 93.6 0.53 1.2E-05 50.5 10.3 16 108-123 5-20 (299)
17 KOG2891 Surface glycoprotein [ 92.7 1.1 2.4E-05 48.9 11.4 18 308-325 390-407 (445)
18 PF05262 Borrelia_P83: Borreli 92.5 1.6 3.5E-05 51.2 13.3 13 144-156 149-161 (489)
19 PF13904 DUF4207: Domain of un 91.9 7.3 0.00016 42.3 16.5 16 330-345 223-238 (264)
20 COG3064 TolA Membrane protein 91.8 4.3 9.4E-05 45.2 14.6 16 236-251 97-112 (387)
21 KOG1144 Translation initiation 91.8 2.8 6E-05 51.3 14.1 22 688-709 666-687 (1064)
22 PRK09510 tolA cell envelope in 91.2 5.5 0.00012 45.6 15.3 12 241-252 102-113 (387)
23 KOG2412 Nuclear-export-signal 90.9 1.7 3.7E-05 51.2 11.0 6 620-625 434-439 (591)
24 KOG1144 Translation initiation 90.2 2.7 5.8E-05 51.4 12.1 12 329-340 290-301 (1064)
25 PF09726 Macoilin: Transmembra 88.0 32 0.00068 42.5 19.3 37 234-270 482-518 (697)
26 KOG2002 TPR-containing nuclear 87.9 46 0.001 42.3 20.4 44 162-208 723-766 (1018)
27 PF15236 CCDC66: Coiled-coil d 87.5 18 0.00039 36.8 14.2 38 243-280 65-102 (157)
28 TIGR02794 tolA_full TolA prote 85.3 13 0.00029 42.0 13.3 8 238-245 87-94 (346)
29 KOG2891 Surface glycoprotein [ 84.5 25 0.00055 38.8 14.3 6 94-99 97-102 (445)
30 PRK00247 putative inner membra 84.3 23 0.0005 41.3 14.9 12 38-49 86-97 (429)
31 KOG3054 Uncharacterized conser 82.8 8.6 0.00019 41.6 9.9 7 385-391 214-220 (299)
32 COG4942 Membrane-bound metallo 82.8 1E+02 0.0023 36.0 21.7 18 164-181 110-127 (420)
33 PF10446 DUF2457: Protein of u 82.4 1.2 2.6E-05 51.3 3.6 12 560-571 98-109 (458)
34 PF07946 DUF1682: Protein of u 80.5 5.8 0.00013 44.1 8.1 7 216-222 242-248 (321)
35 PRK00247 putative inner membra 79.7 33 0.00073 40.0 14.0 17 36-52 61-77 (429)
36 PF04747 DUF612: Protein of un 79.4 56 0.0012 37.7 15.0 23 304-326 124-146 (510)
37 COG4942 Membrane-bound metallo 79.4 1.4E+02 0.0029 35.1 18.8 21 172-192 111-131 (420)
38 KOG2072 Translation initiation 79.2 56 0.0012 40.9 15.9 37 39-83 385-422 (988)
39 KOG3654 Uncharacterized CH dom 77.7 12 0.00026 44.1 9.5 29 28-57 103-131 (708)
40 PF00769 ERM: Ezrin/radixin/mo 75.7 96 0.0021 33.5 15.3 21 241-261 34-54 (246)
41 KOG2072 Translation initiation 72.7 2.7E+02 0.0059 35.3 20.8 19 68-86 480-498 (988)
42 PRK12704 phosphodiesterase; Pr 70.3 1.4E+02 0.003 35.8 16.2 13 716-728 449-461 (520)
43 PF06524 NOA36: NOA36 protein; 67.4 6.4 0.00014 42.9 4.1 36 476-511 198-238 (314)
44 PF10147 CR6_interact: Growth 67.4 1.3E+02 0.0027 32.4 13.5 19 116-134 25-43 (217)
45 PF04931 DNA_pol_phi: DNA poly 65.5 3.8 8.2E-05 50.6 2.3 9 398-406 511-519 (784)
46 TIGR03319 YmdA_YtgF conserved 63.8 2.1E+02 0.0046 34.2 16.0 22 387-410 251-272 (514)
47 KOG0008 Transcription initiati 61.4 8.2 0.00018 49.9 4.1 60 694-753 695-759 (1563)
48 PLN03086 PRLI-interacting fact 61.1 51 0.0011 39.9 10.3 13 283-295 34-46 (567)
49 KOG4363 Putative growth respon 60.1 9.1 0.0002 41.6 3.6 31 503-533 20-56 (270)
50 PF04931 DNA_pol_phi: DNA poly 59.8 5.2 0.00011 49.4 2.0 8 333-340 420-427 (784)
51 KOG3634 Troponin [Cytoskeleton 59.4 46 0.001 37.7 8.9 8 314-321 155-162 (361)
52 KOG1832 HIV-1 Vpr-binding prot 59.3 6.7 0.00015 48.9 2.8 20 108-127 675-694 (1516)
53 PF09026 CENP-B_dimeris: Centr 58.6 3.2 7E-05 39.0 0.0 6 607-612 51-56 (101)
54 PF09726 Macoilin: Transmembra 57.6 4E+02 0.0086 33.3 17.2 14 376-389 606-619 (697)
55 PRK12704 phosphodiesterase; Pr 57.5 4.1E+02 0.0089 31.9 17.0 6 388-393 258-263 (520)
56 PF05672 MAP7: MAP7 (E-MAP-115 57.4 2.5E+02 0.0053 29.3 15.6 6 214-219 25-30 (171)
57 PF06524 NOA36: NOA36 protein; 57.2 12 0.00026 40.9 3.9 10 512-521 266-275 (314)
58 PF13904 DUF4207: Domain of un 56.6 3E+02 0.0065 30.1 16.6 30 316-345 213-242 (264)
59 TIGR03319 YmdA_YtgF conserved 56.5 4.2E+02 0.0092 31.8 17.0 8 694-701 475-482 (514)
60 KOG4661 Hsp27-ERE-TATA-binding 56.1 87 0.0019 37.9 10.8 24 42-66 421-448 (940)
61 KOG0742 AAA+-type ATPase [Post 55.8 4.3E+02 0.0092 31.6 16.9 27 696-722 561-592 (630)
62 PRK00409 recombination and DNA 55.7 2.6E+02 0.0056 35.3 15.4 15 241-255 521-535 (782)
63 PRK00106 hypothetical protein; 55.6 3.2E+02 0.007 33.1 15.6 21 388-410 273-293 (535)
64 PF06637 PV-1: PV-1 protein (P 55.6 4E+02 0.0086 31.2 17.5 23 165-187 208-230 (442)
65 PF12157 DUF3591: Protein of u 54.9 16 0.00034 42.9 4.8 59 693-751 239-300 (457)
66 KOG4661 Hsp27-ERE-TATA-binding 53.7 1.1E+02 0.0024 37.0 11.1 7 141-147 407-413 (940)
67 KOG1363 Predicted regulator of 52.2 57 0.0012 38.5 8.7 11 140-150 218-228 (460)
68 PF05917 DUF874: Helicobacter 52.0 1.5E+02 0.0032 33.3 11.0 10 517-526 322-331 (398)
69 PF05285 SDA1: SDA1; InterPro 50.9 8.2 0.00018 43.1 1.6 13 512-524 90-102 (324)
70 TIGR01069 mutS2 MutS2 family p 50.7 2.2E+02 0.0049 35.7 13.9 18 241-258 516-533 (771)
71 KOG2002 TPR-containing nuclear 50.7 1.8E+02 0.0039 37.3 12.8 34 65-98 525-559 (1018)
72 PF06637 PV-1: PV-1 protein (P 50.6 4.7E+02 0.01 30.6 16.1 28 25-52 88-118 (442)
73 PF10147 CR6_interact: Growth 50.4 1.8E+02 0.0039 31.3 11.2 11 306-316 194-204 (217)
74 PF02029 Caldesmon: Caldesmon; 50.2 93 0.002 37.1 10.0 16 308-323 310-325 (492)
75 PRK11637 AmiB activator; Provi 49.6 4.7E+02 0.01 30.2 20.5 13 168-180 123-135 (428)
76 PRK06231 F0F1 ATP synthase sub 48.7 3.5E+02 0.0075 28.5 15.6 15 326-340 186-200 (205)
77 COG1390 NtpE Archaeal/vacuolar 47.8 3.1E+02 0.0068 28.8 12.4 16 326-341 76-91 (194)
78 KOG0579 Ste20-like serine/thre 47.0 3E+02 0.0065 34.5 13.3 81 239-319 789-870 (1187)
79 TIGR00570 cdk7 CDK-activating 46.5 1.4E+02 0.0031 33.6 10.2 25 151-178 57-81 (309)
80 KOG2357 Uncharacterized conser 46.2 90 0.002 36.4 8.7 19 43-61 114-132 (440)
81 KOG3915 Transcription regulato 46.1 1.1E+02 0.0023 36.3 9.3 20 18-37 222-241 (641)
82 COG5179 TAF1 Transcription ini 46.0 18 0.0004 43.6 3.4 67 693-759 598-668 (968)
83 PRK13428 F0F1 ATP synthase sub 45.6 5.7E+02 0.012 30.1 15.8 15 327-341 141-155 (445)
84 PF11208 DUF2992: Protein of u 45.3 89 0.0019 31.1 7.5 15 235-249 64-78 (132)
85 PF03879 Cgr1: Cgr1 family; I 44.8 2.8E+02 0.0061 26.9 10.5 22 231-252 35-56 (108)
86 PLN03086 PRLI-interacting fact 44.6 1.2E+02 0.0026 36.8 9.9 17 305-321 45-61 (567)
87 PF04615 Utp14: Utp14 protein; 43.4 3.6E+02 0.0079 33.5 14.1 31 153-184 102-132 (735)
88 TIGR03321 alt_F1F0_F0_B altern 43.1 4.5E+02 0.0097 28.2 17.2 14 327-340 144-157 (246)
89 KOG3654 Uncharacterized CH dom 42.8 1.4E+02 0.003 35.7 9.7 14 79-92 193-206 (708)
90 PF11705 RNA_pol_3_Rpc31: DNA- 42.8 20 0.00044 38.0 2.9 9 561-569 211-219 (233)
91 TIGR00570 cdk7 CDK-activating 42.7 5.4E+02 0.012 29.2 13.9 8 215-222 103-110 (309)
92 TIGR01069 mutS2 MutS2 family p 42.4 5.6E+02 0.012 32.3 15.5 6 188-193 413-418 (771)
93 PRK12585 putative monovalent c 41.6 66 0.0014 34.0 6.3 41 252-292 126-166 (197)
94 CHL00019 atpF ATP synthase CF0 41.1 4.1E+02 0.0089 27.2 15.6 15 326-340 162-176 (184)
95 PF15236 CCDC66: Coiled-coil d 40.7 4.3E+02 0.0093 27.2 16.1 13 237-249 68-80 (157)
96 PF02841 GBP_C: Guanylate-bind 39.0 5.6E+02 0.012 28.1 16.8 12 43-54 10-21 (297)
97 PRK06568 F0F1 ATP synthase sub 38.7 4.4E+02 0.0096 26.8 12.2 11 332-342 131-141 (154)
98 KOG1832 HIV-1 Vpr-binding prot 38.6 22 0.00047 44.7 2.6 31 68-99 839-869 (1516)
99 KOG0994 Extracellular matrix g 38.5 1.1E+03 0.025 31.5 25.0 63 34-98 1464-1526(1758)
100 KOG4848 Extracellular matrix-a 37.0 5.5E+02 0.012 27.5 19.0 41 108-150 12-52 (225)
101 KOG2038 CAATT-binding transcri 36.9 24 0.00051 43.8 2.6 21 34-54 167-187 (988)
102 PF12037 DUF3523: Domain of un 36.7 6.5E+02 0.014 28.2 18.5 36 253-288 114-149 (276)
103 PRK07352 F0F1 ATP synthase sub 34.6 5E+02 0.011 26.2 15.8 15 326-340 157-171 (174)
104 PF03066 Nucleoplasmin: Nucleo 34.5 12 0.00025 37.6 -0.4 12 515-526 107-118 (149)
105 PRK12705 hypothetical protein; 34.1 9.2E+02 0.02 29.2 15.6 10 693-702 468-477 (508)
106 KOG0388 SNF2 family DNA-depend 33.9 1.1E+02 0.0024 38.2 7.3 55 287-345 418-476 (1185)
107 PF06886 TPX2: Targeting prote 33.2 2.3E+02 0.0049 24.4 7.2 11 311-321 34-44 (57)
108 PRK14474 F0F1 ATP synthase sub 33.0 6.7E+02 0.014 27.2 15.6 14 328-341 145-158 (250)
109 COG1390 NtpE Archaeal/vacuolar 32.6 6.1E+02 0.013 26.7 13.0 52 252-303 15-66 (194)
110 PF02270 TFIIF_beta: Transcrip 32.4 49 0.0011 36.1 3.9 57 692-753 212-273 (275)
111 PF07111 HCR: Alpha helical co 32.2 1.1E+03 0.025 29.6 24.7 79 83-182 404-501 (739)
112 PRK01558 V-type ATP synthase s 32.1 5.3E+02 0.012 26.9 11.2 16 322-337 73-88 (198)
113 KOG3130 Uncharacterized conser 31.4 35 0.00075 39.5 2.6 31 159-189 13-43 (514)
114 KOG2341 TATA box binding prote 31.4 2.1E+02 0.0045 34.8 9.0 21 79-99 165-186 (563)
115 KOG2507 Ubiquitin regulatory p 30.9 85 0.0019 36.8 5.5 20 476-495 421-440 (506)
116 PRK13428 F0F1 ATP synthase sub 30.9 9.4E+02 0.02 28.3 15.3 14 710-723 431-444 (445)
117 PF10835 DUF2573: Protein of u 30.3 67 0.0014 29.5 3.7 34 37-78 2-35 (82)
118 PF06936 Selenoprotein_S: Sele 29.9 3.5E+02 0.0076 28.5 9.4 8 308-315 111-118 (190)
119 PF02841 GBP_C: Guanylate-bind 29.5 7.9E+02 0.017 27.0 15.7 12 43-54 45-56 (297)
120 KOG2505 Ankyrin repeat protein 29.0 1.3E+02 0.0028 36.1 6.6 19 107-125 272-291 (591)
121 KOG0577 Serine/threonine prote 28.5 1.3E+03 0.028 29.1 14.9 9 38-46 299-307 (948)
122 PRK13453 F0F1 ATP synthase sub 27.8 6.5E+02 0.014 25.5 15.7 14 327-340 157-170 (173)
123 PRK14475 F0F1 ATP synthase sub 27.7 6.4E+02 0.014 25.4 15.7 14 326-339 148-161 (167)
124 PF13892 DBINO: DNA-binding do 26.4 5.8E+02 0.013 25.9 9.8 18 326-343 118-135 (139)
125 PRK13460 F0F1 ATP synthase sub 26.1 7E+02 0.015 25.2 15.7 13 327-339 155-167 (173)
126 PF06098 Radial_spoke_3: Radia 25.4 9.2E+02 0.02 27.1 12.1 14 242-255 139-152 (291)
127 KOG3555 Ca2+-binding proteogly 24.7 62 0.0013 37.0 3.0 19 519-537 392-411 (434)
128 PRK06231 F0F1 ATP synthase sub 24.3 8.5E+02 0.018 25.6 15.2 7 330-336 177-183 (205)
129 PRK14472 F0F1 ATP synthase sub 23.6 7.7E+02 0.017 24.9 15.7 12 328-339 158-169 (175)
130 PF06658 DUF1168: Protein of u 23.3 5.6E+02 0.012 25.9 9.1 59 232-290 42-100 (142)
131 KOG2785 C2H2-type Zn-finger pr 23.0 36 0.00077 39.1 0.8 18 384-401 9-29 (390)
132 KOG2141 Protein involved in hi 22.7 64 0.0014 40.0 2.8 10 696-705 482-491 (822)
133 PRK14471 F0F1 ATP synthase sub 22.7 7.7E+02 0.017 24.5 15.9 14 327-340 148-161 (164)
134 smart00546 CUE Domain that may 22.6 1.3E+02 0.0028 23.5 3.7 26 712-737 3-28 (43)
135 PRK13461 F0F1 ATP synthase sub 22.5 7.7E+02 0.017 24.4 15.7 13 327-339 144-156 (159)
136 KOG3223 Uncharacterized conser 22.3 4.7E+02 0.01 27.9 8.6 8 502-509 206-213 (221)
137 KOG2507 Ubiquitin regulatory p 22.2 2.3E+02 0.0051 33.4 7.0 9 241-249 199-207 (506)
138 KOG4709 Uncharacterized conser 22.0 2.8E+02 0.0061 29.6 6.9 9 328-336 80-88 (217)
139 KOG2253 U1 snRNP complex, subu 21.8 7.4E+02 0.016 30.8 11.2 14 724-737 627-640 (668)
140 PF11081 DUF2890: Protein of u 21.7 38 0.00083 35.5 0.7 14 518-533 19-32 (187)
141 PF12037 DUF3523: Domain of un 21.2 1.2E+03 0.026 26.2 17.5 8 316-323 166-173 (276)
142 PRK03963 V-type ATP synthase s 21.0 8.9E+02 0.019 24.7 12.4 78 241-318 4-81 (198)
143 KOG3634 Troponin [Cytoskeleton 20.6 5.5E+02 0.012 29.5 9.2 11 328-338 163-173 (361)
144 PF04747 DUF612: Protein of un 20.0 1.2E+03 0.026 27.5 11.8 14 696-709 453-466 (510)
No 1
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=100.00 E-value=1e-96 Score=820.59 Aligned_cols=767 Identities=43% Similarity=0.654 Sum_probs=638.1
Q ss_pred CcchhhhhhccC---CCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccccc----cCcccccCchhHHHHHHHhccCCcH
Q 003501 13 RPSKTLKRKRAW---PALTGEDKESRIRRFNEEVKWLFGYYKEMITNQRLT----IDLSECAGSLNGMVAALMEESELPL 85 (815)
Q Consensus 13 ~~~k~~~~~~~~---~~~~~~~k~~~~~~~~~e~~~l~~~~re~~~~~~~~----~~~~~~~~~~~~~Va~L~eeS~lpL 85 (815)
++++.-+|||.. .++++..++.+++.++.+++|||.||++++ ..--. ..+.+| .+.|.+++.||+++++|+
T Consensus 18 ~k~~ld~~kre~~~~~~~~S~~~e~~t~~~N~~~d~~~~d~~~~~-~~~~~~~~~~~~~~~-~~~n~~~~L~ae~~~~~~ 95 (811)
T KOG4364|consen 18 EKKKLDKRKREPTAIENLTSEEKESQTSSLNLEMDGLFDDFREVM-DKSKRTDLFSGFSEC-SSLNSMVALLAEEMSLPL 95 (811)
T ss_pred ccCccchhhhchhhhhhccccccccchhhhhcccchhHHHHHHHh-ccccccccccCceec-cccccccchhhhhccccc
Confidence 456667777776 789999999999999999999999999998 32222 144488 999999999999999999
Q ss_pred HHHHHHHHHHhcccCccccCccHHHHHHHHHHHHhhhhcCCCCCCCCcccCcCCCceEEeeeCCCcccchhhhhHHHHHH
Q 003501 86 TKLVEEIHVKLKENGSEKLGVGLAAVKSAVLFVGQRVMYGVSNADTDILEDDAEASLWCWETRDVKLLPKSVRGSLRIRR 165 (815)
Q Consensus 86 s~L~~~i~~~L~~~~~~~~~l~~a~V~s~I~~va~R~nYG~~~~~~d~Led~~~~~lWrWE~~D~k~LP~~~r~~~~~Rr 165 (815)
+-|++.+|..|++. ..||+...+.+++..+++|..||+.++|++++++....|+||||++++..+|.+.+..+..++
T Consensus 96 ~p~~~~s~~~~K~k---~Egv~~~~~~~~~~s~~~~~~s~~e~~d~p~~~~~~eq~~~~~et~~~~~~~~s~~vVl~~~~ 172 (811)
T KOG4364|consen 96 SPLVDESYLKLKEK---TEGVTMVAVKSAVVSVGQRVSSGVENVDAPVLEDDSEQCLWCWETRDLKIMPSSVRVVLKLRR 172 (811)
T ss_pred CCccccccccCccc---ccccchhhcccccccccccccccccccCCcccCchhhhhchhhcccCcccCCCcchhHHhhhh
Confidence 99999999999996 679999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCchhhhHHHHHHHHhhhhhhhHHHHHHHHhhhhccChhhhhHHhhHHHHHHHHHH
Q 003501 166 TFRKKIHERITAVSAMITALQKSESDPSFINDLMKASKKLGKVLSEASIRVLVDSMLKKNGAEIVEKDAKREEKILIKQL 245 (815)
Q Consensus 166 ~~R~ki~~r~~Av~~~L~~l~~~~~~~~~~~~~~k~~~kl~k~l~~~~~r~~~e~~~qk~~~~~~~k~a~~~e~~~~k~~ 245 (815)
++|..||.++.|+.+|+.+++.++....|..|+-++..++++.++..+|++....+.+++...+..+.-+..++++.||+
T Consensus 173 ~~rdp~~k~vkav~q~p~a~~~sevl~s~~~~~sSs~~~~~~~sdts~~~~~s~q~p~k~~s~~~pk~tk~p~~l~~KQ~ 252 (811)
T KOG4364|consen 173 TCRDPIHKRVKAVSQMPAALQRSEVLKSWRSDLSSSAEKLGKISDTSDIRSFSDQMPQKNSSEMAPKDTKRPEKLLLKQL 252 (811)
T ss_pred cccchhhhcccccccCcccccHHHHHhhccccchhhHhhhhccCCccccCcccccccccCCCcCCCCCCCcchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003501 246 EKNKREVEKEKKRMDCEQQKEKLHSERELKRLQEEAERDERRREKEEADIRKQIRKQQEEADKEQRHREKEEAEMKKKLA 325 (815)
Q Consensus 246 ek~~k~~eke~~~~~kE~~~e~~~~ek~~k~~e~~~~k~ek~~ekee~e~~k~~~k~~eeaekeqkr~ekeea~~k~~~~ 325 (815)
.|+..+.+|++.+|++..+.|+ +.+...+++++++.++++.+++++++.+|.++|+|++-|+|+|||+.|+++++|++.
T Consensus 253 rk~meEreK~R~erEr~~leeK-rlk~~~~~eek~~~keE~~kekee~Klekd~KKqqkekEkeEKrrKdE~Ek~kKqee 331 (811)
T KOG4364|consen 253 RKNMEEREKERKERERQVLEEK-RLKEKEQKEEKKAIKEENNKEKEETKLEKDIKKQQKEKEKEEKRRKDEQEKLKKQEE 331 (811)
T ss_pred HHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 9998777777766666555444 445555666777889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCcccCCCCCCCcccccccccccCCCCchhhhhhcccccccCCCCCCchhhhhhhcchhhhhhhh
Q 003501 326 LQKQASMMERFLKRSKILTSCQNDESSPRAITSVLLSKNSEQLPEAVTKLVDSTLSSNDEINIDDIRRSHLSSWHRFGHF 405 (815)
Q Consensus 326 ~~kqa~~m~rFfkk~k~~~~~~~~~ss~~~~~~~~~~~~~~~~~e~~~~~mD~~L~s~~~~~le~l~r~~~~~w~~l~~~ 405 (815)
.+|++++|+||...............+-+-.+....+......+..+-..+|..++..+..+...++..+|..|+.+..+
T Consensus 332 k~KR~k~~Erkee~~rk~deerkK~e~ke~ea~E~rkkr~~aei~Kffqk~~~k~~~~~~a~~s~~~f~pFeikd~M~la 411 (811)
T KOG4364|consen 332 KQKRAKIMERKEEKSRKSDEERKKLESKEVEAQELRKKRHEAEIGKFFQKIDNKFSTTCEATVSDIRFEPFEIKDQMGLA 411 (811)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhcccccccCCcccccccccccccchhhcccccc
Confidence 99999999999988776544333323322222223333344445666678888888888889999999999999998755
Q ss_pred hhcccccccccccCchhhhhhhcccc-CCCCCCCCCcchhhhhhhhcccccCCccccccCCCCchhhhccc-cceEEeec
Q 003501 406 VRSNRNQHWGIRRKPKTELFKELKLT-NRGLGHDDDLSMERSEDRCEAQTVDDKSCITSSDSSSAITKCKR-WKQLLQFD 483 (815)
Q Consensus 406 ~r~~r~~~wg~r~~Pk~E~fk~Lkl~-~~~~~~d~~~s~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~K~l~F~ 483 (815)
... +..+||.++-|..+||.-++|+ .++...+.++.++.-.+++..-.+.+..|....- ...+..+ ++|||||+
T Consensus 412 pi~-s~~~~~~~rsqld~Lf~r~pls~~~dvk~q~e~~~e~~~d~~~~adf~~sa~kpve~---e~~k~r~mKaKlLqF~ 487 (811)
T KOG4364|consen 412 PIS-SKKHWGMRRSQLDELFPRLPLSTNSDVKSQGEPNMEKQGDGCEEADFDGSACKPVES---ERKKSRRMKAKLLQFD 487 (811)
T ss_pred cee-hhccchhhhhhhhhhcccCCCcccccccccCCccccccCCcceecccccccceeecc---CCcccchhHHHHhhhc
Confidence 444 4679999999999999999998 7777777777776665666655666655555432 1122222 68999999
Q ss_pred CCCCCCceeeecCCCcccCCCCCCCCCCCCCCCCCChhhhhhccCCCCCCCCcCCCCcccCCCCCCCcccCCCccccCCC
Q 003501 484 KSHRPAFYGIWPKKSHIVGPRHPLMKDPDLDYDIDSDEEWEEEEPGESLSDCEKDGDEEGCSKADDEDESEDGFFVPDGY 563 (815)
Q Consensus 484 en~RPpy~GT~~k~s~~v~~r~Pf~kd~~lDYdyDSd~EWeeee~GEdl~d~e~~~e~eed~~~~ded~~~d~f~vpdg~ 563 (815)
+|+||+|||||+++|.+|.||+||++++.|||++|||+|||||++||+|+++|+|++++.+ +|.+|++|||||||||
T Consensus 488 ~NrRP~YyGTWrKKS~~VsarrPlAq~~llDYEVdSDeEWEEEepGESlS~sEddedd~~e---Ed~edEdDgffVPhgy 564 (811)
T KOG4364|consen 488 KNRRPGYYGTWRKKSQVVSARRPLAQDPLLDYEVDSDEEWEEEEPGESLSDSEDDEDDSLE---EDCEDEDDGFFVPHGY 564 (811)
T ss_pred cccCCcccccccccccccccCCcccccccccccccCcccccccCCCccccccccccccccc---cccccccCCeecCCcc
Confidence 9999999999999999999999999999999999999999999999999998876443221 3434678999999999
Q ss_pred CCCCCCccccchhccccccccCCCCCchhhhhhHHHHHHHH-hhHHhhHhHHHHhhcCCceEeeccCcCCcccccccccc
Q 003501 564 LSEDEGVQVDRMEIDLSAEDTKSSPSYKQELESKESCALVR-QRKYLSSLTEQALQKNQPLIILNLMHEKVPLLMAEDLS 642 (815)
Q Consensus 564 Lsd~E~~~~~~~~~~~~~e~~~~s~~~~~~~e~ee~~~l~~-~qk~l~~lt~~al~~~~PlvI~~l~~~k~~l~~a~d~~ 642 (815)
||+|||++.+++++|+..-. ..+-.......+..|+.+.. +++.+..++.|++....+++|.+|.+.+.++..+.+.+
T Consensus 565 LSedEgv~d~~~d~D~~e~d-K~tek~k~r~~gp~f~dln~~k~~~~~A~~ah~a~d~ak~~~~~la~ep~~lpa~~dqt 643 (811)
T KOG4364|consen 565 LSEDEGVQDDRMDIDPSEQD-KNTEKSKQRQEGPEFCDLNQVKQKHLQALTAHAAKDTAKLIICNLAHEPVSLPAAKDQT 643 (811)
T ss_pred ccccccccccccCcchhhhh-hhhhhhhhhhcCchHhhhcchhHHHHHHHHHHHhhhhHHHhhhhhccCCCCCchhhccC
Confidence 99999999888877754221 22334455667778999865 67788889999999999999999999999999999999
Q ss_pred CCchhhhhhhhhccccCCCCCCccccccccCCcccc-----ccccC--CCCCCCCCCCcCcHHHHHHHHhcCCCcHHHHH
Q 003501 643 GTSNMEQKCLQALSIRPFPGDLHVEITVDIMDDENE-----KDCLS--NGKGSTTLISESDLPAIVSVIQSCSTNMNKIL 715 (815)
Q Consensus 643 ~t~k~e~~~lqaLs~~~~P~~p~i~~~~~~~~~~~~-----~~~~S--~~Kk~kt~Ipd~dLp~Lv~~Ihgs~~Si~~LV 715 (815)
++.+++..|..+|-++.+|.......+......+.+ ..+.| ++...+..||+.+++....-|..|+.+++.+|
T Consensus 644 p~qpve~~~d~alm~ql~pl~hgn~ns~~~ii~E~qE~~k~~~~~sn~t~~p~~~~~~~~~~~t~s~~~~~~S~~~~~~~ 723 (811)
T KOG4364|consen 644 PTQPVEQICDRALMVQLFPLSHGNENSINDIIDEDQEASKFSCSQSNPTSNPKAKIIPDSDLLTVSSTIQSCSQGINRVV 723 (811)
T ss_pred CCcchHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHhhhccCCCCCCCCccccccccccchhhhhccccHHHHHH
Confidence 999999999999988888876543322221111111 11112 22223445689999999999999999999999
Q ss_pred HHHHHhCCCCcHHHHHHHHHHhhhccCCCCceEEcHHHHHHcCC--CCCCCCC-CccchhhhhccccCCCCCCCCCCCCC
Q 003501 716 EALQQKFPSISRAQLRNKVREISDFNFAENRWQVKREILIELGY--SPDKNGG-RAKGIATFFSKRCLPPDGKSLNPNEA 792 (815)
Q Consensus 716 E~lqk~fP~vSKa~IKnkIkEiA~r~~~~krW~VK~EvL~~~gL--spe~~~~-~~~~i~~~~s~~c~~~~~~~~~~~~~ 792 (815)
+.++..||.++|..+--+|++|..| -+.+|+|+...+-.+|| ||.++++ .|++|.+||+.|||||.+...+..++
T Consensus 724 ~t~~~k~~~~Pk~rlcw~V~~l~~F--q~~~lqv~~qw~y~l~~~~sp~~d~~~~p~t~pt~~~p~~lp~s~~~~~~v~~ 801 (811)
T KOG4364|consen 724 ETLQQKFPDVPKTRLCWKVRELSDF--QDSRLQVKKQWLYKLGLSPSPDKDGKRLPKTIPTFFSPRCLPPSTKPQPAVED 801 (811)
T ss_pred HhhhhhcCCCCcchhHHHHHHHHhc--ccccccccceeeeeecCCCCCCCccccCCCCCCcccCcccCCCcCCCCcchhh
Confidence 9999999999999999999999999 99999999999999999 6888877 59999999999999998666655554
Q ss_pred CCC
Q 003501 793 SPL 795 (815)
Q Consensus 793 sp~ 795 (815)
.|.
T Consensus 802 ~~~ 804 (811)
T KOG4364|consen 802 AAE 804 (811)
T ss_pred HHH
Confidence 443
No 2
>PF12253 CAF1A: Chromatin assembly factor 1 subunit A; InterPro: IPR022043 The CAF-1 or chromatin assembly factor-1 consists of three subunits, and this is the first, or A []. The A domain is uniquely required for the progression of S phase in mouse cells [], independent of its ability to promote histone deposition [] but dependent on its ability to interact with HP1 - heterochromatin protein 1-rich heterochromatin domains next to centromeres that are crucial for chromosome segregation during mitosis. This HP1-CAF-1 interaction module functions as a built-in replication control for heterochromatin, which, like a control barrier, has an impact on S-phase progression in addition to DNA-based checkpoints [].
Probab=99.94 E-value=7.3e-28 Score=210.86 Aligned_cols=62 Identities=60% Similarity=1.107 Sum_probs=57.5
Q ss_pred ceEEeecCCCCCCceeeecCC-CcccCCCCCCCCC-CCCCCCCCChhhhhhccCCCCCCCCcCC
Q 003501 477 KQLLQFDKSHRPAFYGIWPKK-SHIVGPRHPLMKD-PDLDYDIDSDEEWEEEEPGESLSDCEKD 538 (815)
Q Consensus 477 ~K~l~F~en~RPpy~GT~~k~-s~~v~~r~Pf~kd-~~lDYdyDSd~EWeeee~GEdl~d~e~~ 538 (815)
|||||||+|+||||||||+++ |.+|++||||+++ +.|||+||||+||+|+++||||++++++
T Consensus 1 ~K~l~F~e~~RPpY~GT~~k~~s~~v~~r~P~~~d~~~lDYdyDSd~EWeE~e~GEdl~~~eee 64 (77)
T PF12253_consen 1 MKLLQFHENVRPPYYGTWTKKSSKIVTPRNPFAKDLPNLDYDYDSDDEWEEEEEGEDLDSDEEE 64 (77)
T ss_pred CceEEeCCCCCCCEeeEEccCcccccccCCcccccccccceecCCccccccCCCCccccccccc
Confidence 799999999999999999999 8999999999999 7899999999999988999999875443
No 3
>KOG4363 consensus Putative growth response protein [Signal transduction mechanisms]
Probab=99.10 E-value=3.7e-11 Score=125.05 Aligned_cols=232 Identities=20% Similarity=0.247 Sum_probs=132.7
Q ss_pred cccceEEeecCCCCCCceeeecCCCcccCCCCCCCC-CCCCCCCCCChhhhhhcc-CCCCCCCCcCCCCcccCCCCCCCc
Q 003501 474 KRWKQLLQFDKSHRPAFYGIWPKKSHIVGPRHPLMK-DPDLDYDIDSDEEWEEEE-PGESLSDCEKDGDEEGCSKADDED 551 (815)
Q Consensus 474 ~~~~K~l~F~en~RPpy~GT~~k~s~~v~~r~Pf~k-d~~lDYdyDSd~EWeeee-~GEdl~d~e~~~e~eed~~~~ded 551 (815)
.-+++|+.|++ |||+.||++-. ..+++..||.. .+++.|+|++|+||..+| +|+ .++.|+.+++-.+....| |
T Consensus 10 ~~ph~y~~nr~--~pp~lst~sld-~t~~~~~~~sa~g~~de~d~g~d~e~~~ee~~~~-vdn~dd~~e~~~~~~~~d-d 84 (270)
T KOG4363|consen 10 QVPHKYIKNRE--RPPFLSTYSLD-FTLPPNDPFSAKGTGDEEDYGEDEEWPNEEEEGE-VDNGDDIEEDRGEEEFLD-D 84 (270)
T ss_pred cCCccccccee--cCCccccccCC-CcCCCCCcccccCCchhhhcCCccccCChhhccc-cccCcccccccccceeec-c
Confidence 33899999999 99999999976 66777888865 689999999999997554 343 333222222100111011 2
Q ss_pred ccCCCccccCCCCCCCCCccccchhccccccccCCCCCchhhhhhHHHHHHHHhhHHhhHhHHHHhhcCCceE--eeccC
Q 003501 552 ESEDGFFVPDGYLSEDEGVQVDRMEIDLSAEDTKSSPSYKQELESKESCALVRQRKYLSSLTEQALQKNQPLI--ILNLM 629 (815)
Q Consensus 552 ~~~d~f~vpdg~Lsd~E~~~~~~~~~~~~~e~~~~s~~~~~~~e~ee~~~l~~~qk~l~~lt~~al~~~~Plv--I~~l~ 629 (815)
++..-|+|-||++...++....- .. +. .+....||+ +++.|
T Consensus 85 ed~~~f~~~~~v~~~l~~~ll~i-----------------------------~~-----~~---v~~~k~pllp~f~~~w 127 (270)
T KOG4363|consen 85 EDVVLFSVGDGVLLALVLNLLQI-----------------------------QE-----NV---VLDPKGPLLPIFSSAW 127 (270)
T ss_pred cccchhhccchhhhhhcchHHhh-----------------------------hc-----cc---eecCCcceeehhhhhh
Confidence 46678888898886654332110 00 00 001112332 12222
Q ss_pred cCCccccccccccCCchhhhhhhhhcccc-CCC--CCCccc----ccc----ccCCccccccccCCCCCCCCCC-CcCcH
Q 003501 630 HEKVPLLMAEDLSGTSNMEQKCLQALSIR-PFP--GDLHVE----ITV----DIMDDENEKDCLSNGKGSTTLI-SESDL 697 (815)
Q Consensus 630 ~~k~~l~~a~d~~~t~k~e~~~lqaLs~~-~~P--~~p~i~----~~~----~~~~~~~~~~~~S~~Kk~kt~I-pd~dL 697 (815)
.=. + ..|+.. .+.++..+ ++- +.|... .++ ..++......+++.-++.+..| +..+|
T Consensus 128 ~fe----P---~~g~~s----~v~gl~Y~~iD~~lg~P~~ke~~wl~~sR~~A~f~~~~~s~~ks~f~~n~q~i~~l~al 196 (270)
T KOG4363|consen 128 WFE----P---CCGTAS----AVKGLLYPCIDGHLGEPHKKEREWLWVSRCNAVFVGINHSSAKSDFKNNKQLILTLAAL 196 (270)
T ss_pred hCC----c---chhHHH----HHhhheeeeecccCCCCCccchhhhhhhhHHHHHHhhhhccccCccccCceeeecHHHH
Confidence 110 0 011110 01111111 110 122110 000 0111111111233333333343 66899
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHhCCCCcHHHHHHHHHHhhhccC--CCCceEEcHHHHHHcCC
Q 003501 698 PAIVSVIQSCSTNMNKILEALQQKFPSISRAQLRNKVREISDFNF--AENRWQVKREILIELGY 759 (815)
Q Consensus 698 p~Lv~~Ihgs~~Si~~LVE~lqk~fP~vSKa~IKnkIkEiA~r~~--~~krW~VK~EvL~~~gL 759 (815)
+.+|.-|.++++|..+|.++++..+|.|+|..|.|||.+||.+.. ..+.|++|. +.++..+
T Consensus 197 s~~iw~vfDrsrsg~~L~ei~~~l~p~vtknlV~ntv~eya~r~fk~~~R~Wipki-~Fa~~~~ 259 (270)
T KOG4363|consen 197 SRGIWYVFDRSRSGGGLGEIIAFLAPQVTKNLVYNTVYEYASRDFKLYPRSWIPKI-FFAGGNT 259 (270)
T ss_pred hhhhhheeccccccchhHHHHHHHHHHHHHHHHhhcceeeeccchhhcccchhhhh-hhccccc
Confidence 999999999999999999999999999999999999999999964 678999987 4444333
No 4
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=98.66 E-value=6.1e-07 Score=92.97 Aligned_cols=106 Identities=39% Similarity=0.543 Sum_probs=64.4
Q ss_pred HHhhHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 003501 232 KDAKREEKILIKQLEKNKREVEKEKKRMDCEQQKEKLHSERELKRLQEEAERDERRREKEEADIRKQI---RKQQEEADK 308 (815)
Q Consensus 232 k~a~~~e~~~~k~~ek~~k~~eke~~~~~kE~~~e~~~~ek~~k~~e~~~~k~ek~~ekee~e~~k~~---~k~~eeaek 308 (815)
+...++++.+.+..++..++.++|.++++++..++....++..++...+..+.++.+++++.+.+++. +++++...|
T Consensus 83 k~~ek~eke~~k~e~k~~k~~eKE~~~~~keeek~~ke~ek~~~k~~~E~ek~ek~~~kee~~kek~e~~~~k~eek~~k 162 (216)
T PF11600_consen 83 KEEEKEEKEREKEEEKEEKEREKEEERREKEEEKEKKEEEKEEKKEKKEEEKAEKEREKEEKRKEKEEEKEAKEEEKRKK 162 (216)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44555666677777777777788888777777777666666666666666666666666655554443 233333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 003501 309 EQRHREKEEAEMKKKLALQKQASMMERFLKRSKI 342 (815)
Q Consensus 309 eqkr~ekeea~~k~~~~~~kqa~~m~rFfkk~k~ 342 (815)
+..++.++|++. +.+++..|++||+++..
T Consensus 163 eeekr~~eE~~~-----~k~~q~~~~~FF~k~~~ 191 (216)
T PF11600_consen 163 EEEKRKKEEEKR-----LKKEQARITSFFKKPKT 191 (216)
T ss_pred HHHHHhhHHHHH-----HHHHHHHHHHHhCCCCC
Confidence 444444444421 12225569999998863
No 5
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=98.30 E-value=1.7e-05 Score=92.01 Aligned_cols=126 Identities=20% Similarity=0.352 Sum_probs=66.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH------HHHHHHHHHHHHH-HHHHHHHHHHH
Q 003501 263 QQKEKLHSERELKRLQEEAERDERRREKEEADIRKQIRKQQEE----AD------KEQRHREKEEAEM-KKKLALQKQAS 331 (815)
Q Consensus 263 ~~~e~~~~ek~~k~~e~~~~k~ek~~ekee~e~~k~~~k~~ee----ae------keqkr~ekeea~~-k~~~~~~kqa~ 331 (815)
..+++.+.+++.|+++++.+++||++.+|++++.|+..|+... +. .+.+|+++++.++ ..+..+.++++
T Consensus 294 kekee~Klekd~KKqqkekEkeEKrrKdE~Ek~kKqeek~KR~k~~Erkee~~rk~deerkK~e~ke~ea~E~rkkr~~a 373 (811)
T KOG4364|consen 294 KEKEETKLEKDIKKQQKEKEKEEKRRKDEQEKLKKQEEKQKRAKIMERKEEKSRKSDEERKKLESKEVEAQELRKKRHEA 373 (811)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 3444445566777777777777888777777777765544321 11 2222333332121 22233446678
Q ss_pred HHHHhhcccCCcccCCCCCCCcccccccccccCCCCchhhhhhcccccccCCCCCCchhhhhh--hcchhhhhhhhhhc
Q 003501 332 MMERFLKRSKILTSCQNDESSPRAITSVLLSKNSEQLPEAVTKLVDSTLSSNDEINIDDIRRS--HLSSWHRFGHFVRS 408 (815)
Q Consensus 332 ~m~rFfkk~k~~~~~~~~~ss~~~~~~~~~~~~~~~~~e~~~~~mD~~L~s~~~~~le~l~r~--~~~~w~~l~~~~r~ 408 (815)
.|.+||.+..+.-+ .+... .+ +-..+. .|....++.+.+|++- |-..+..|+.|+++
T Consensus 374 ei~Kffqk~~~k~~------~~~~a-~~-----s~~~f~--------pFeikd~M~lapi~s~~~~~~~rsqld~Lf~r 432 (811)
T KOG4364|consen 374 EIGKFFQKIDNKFS------TTCEA-TV-----SDIRFE--------PFEIKDQMGLAPISSKKHWGMRRSQLDELFPR 432 (811)
T ss_pred HHHhhhcccccccC------Ccccc-cc-----cccccc--------cchhhccccccceehhccchhhhhhhhhhccc
Confidence 89999999864321 11111 10 001111 2455666777777553 22445667777764
No 6
>PF15539 CAF1-p150_C2: CAF1 complex subunit p150, region binding to CAF1-p60 at C-term
Probab=98.15 E-value=3.7e-06 Score=89.10 Aligned_cols=68 Identities=21% Similarity=0.299 Sum_probs=56.9
Q ss_pred CCcCcHHHHHHHHhcCCCcHHHHHHHHHHhC----------------------CC-------CcHHHHHHHHHHhhhccC
Q 003501 692 ISESDLPAIVSVIQSCSTNMNKILEALQQKF----------------------PS-------ISRAQLRNKVREISDFNF 742 (815)
Q Consensus 692 Ipd~dLp~Lv~~Ihgs~~Si~~LVE~lqk~f----------------------P~-------vSKa~IKnkIkEiA~r~~ 742 (815)
..+..|..|+.++|||..|...||..|+... |. .+|..|+..|.+.|.|.+
T Consensus 67 ~DeqlL~QLlpLlHGNvN~sk~iI~EFqE~crrg~~s~~~~sp~sPs~s~l~tP~~~~~~~vpsk~~lkr~isensvyeK 146 (292)
T PF15539_consen 67 RDEQLLQQLLPLLHGNVNGSKFIIREFQEYCRRGLLSEETSSPDSPSKSRLRTPEFSEDSAVPSKARLKRIISENSVYEK 146 (292)
T ss_pred ccHHHHHHHHHHhcCCcccchHHHHHHHHHHHhccccCCCCCCCCCCccccCCCcccccccccccchHHhhhhhhhhhcc
Confidence 3566799999999999999988888887432 11 378899999999999964
Q ss_pred ---CCCceEEcHHHHHHcCC
Q 003501 743 ---AENRWQVKREILIELGY 759 (815)
Q Consensus 743 ---~~krW~VK~EvL~~~gL 759 (815)
..-||||.+++|.+|++
T Consensus 147 rP~~RmCWyVh~evL~kF~q 166 (292)
T PF15539_consen 147 RPKFRMCWYVHPEVLKKFQQ 166 (292)
T ss_pred CCCCcEEEEECHHHHhhcCc
Confidence 45699999999999999
No 7
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=97.24 E-value=0.0049 Score=64.24 Aligned_cols=103 Identities=29% Similarity=0.387 Sum_probs=46.3
Q ss_pred HHHHHHhHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003501 242 IKQLEKNKREVEKEKKRMDCEQQKEKLHSERELKRLQEEAERDERRREKEEADIRKQIRKQQEEADKEQRHREKEEAEMK 321 (815)
Q Consensus 242 ~k~~ek~~k~~eke~~~~~kE~~~e~~~~ek~~k~~e~~~~k~ek~~ekee~e~~k~~~k~~eeaekeqkr~ekeea~~k 321 (815)
++..++..++.++++++..+++.++..+++++..+...+.++.+++..+|+.++++...+.+++.++++....|++++.+
T Consensus 82 ~k~~ek~eke~~k~e~k~~k~~eKE~~~~~keeek~~ke~ek~~~k~~~E~ek~ek~~~kee~~kek~e~~~~k~eek~~ 161 (216)
T PF11600_consen 82 EKEEEKEEKEREKEEEKEEKEREKEEERREKEEEKEKKEEEKEEKKEKKEEEKAEKEREKEEKRKEKEEEKEAKEEEKRK 161 (216)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34555555555555555555555555555554444444444444444444444444443443333333333333333333
Q ss_pred HHHHHHHH------HHHHHHhhcccCCcc
Q 003501 322 KKLALQKQ------ASMMERFLKRSKILT 344 (815)
Q Consensus 322 ~~~~~~kq------a~~m~rFfkk~k~~~ 344 (815)
++....+. ...=.+|..+++.+.
T Consensus 162 keeekr~~eE~~~~k~~q~~~~~FF~k~~ 190 (216)
T PF11600_consen 162 KEEEKRKKEEEKRLKKEQARITSFFKKPK 190 (216)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 33222211 223445667775433
No 8
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=97.06 E-value=0.011 Score=73.66 Aligned_cols=8 Identities=25% Similarity=0.260 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q 003501 37 RRFNEEVK 44 (815)
Q Consensus 37 ~~~~~e~~ 44 (815)
..+..|+.
T Consensus 57 ~~~~~EI~ 64 (1021)
T PTZ00266 57 SQLVIEVN 64 (1021)
T ss_pred HHHHHHHH
Confidence 34444544
No 9
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=96.12 E-value=0.076 Score=66.58 Aligned_cols=9 Identities=33% Similarity=0.287 Sum_probs=3.6
Q ss_pred HHHHHhhhc
Q 003501 732 NKVREISDF 740 (815)
Q Consensus 732 nkIkEiA~r 740 (815)
.|-+.|-++
T Consensus 921 ~~~~~~~~~ 929 (1021)
T PTZ00266 921 EKEKGIYDR 929 (1021)
T ss_pred HHhhhHHHH
Confidence 333444333
No 10
>PTZ00121 MAEBL; Provisional
Probab=94.99 E-value=1.7 Score=55.86 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003501 32 KESRIRRFNEEVKWLFGYYKE 52 (815)
Q Consensus 32 k~~~~~~~~~e~~~l~~~~re 52 (815)
-...+..|..=++.||..+-.
T Consensus 939 ~~~~~~~f~eC~e~lF~~S~s 959 (2084)
T PTZ00121 939 NEVGINKFGGCLEYLFINSPK 959 (2084)
T ss_pred ccccchhHHHHHHHHHhhchh
Confidence 335566777778888865433
No 11
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=94.41 E-value=2.1 Score=52.07 Aligned_cols=12 Identities=33% Similarity=0.531 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHH
Q 003501 167 FRKKIHERITAV 178 (815)
Q Consensus 167 ~R~ki~~r~~Av 178 (815)
+|++-+.||.-+
T Consensus 828 ~rkr~~~ri~~~ 839 (1259)
T KOG0163|consen 828 ARKRHRPRIAGI 839 (1259)
T ss_pred HHhhhchHHHHH
Confidence 566666666555
No 12
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=94.34 E-value=2.4 Score=51.65 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003501 303 QEEADKEQRHREKEEAE 319 (815)
Q Consensus 303 ~eeaekeqkr~ekeea~ 319 (815)
.+|+|+|-||+-++|.+
T Consensus 990 a~e~eee~k~q~~~Eqe 1006 (1259)
T KOG0163|consen 990 AKEAEEEAKRQNQLEQE 1006 (1259)
T ss_pred HHHHHHHHHHHhHHHHH
Confidence 45555666666655544
No 13
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.33 E-value=0.96 Score=54.94 Aligned_cols=13 Identities=38% Similarity=0.585 Sum_probs=7.2
Q ss_pred ccCCcHHHHHHHHH
Q 003501 80 ESELPLTKLVEEIH 93 (815)
Q Consensus 80 eS~lpLs~L~~~i~ 93 (815)
-|.||-..|+ +|+
T Consensus 223 qS~Lpq~~LA-~IW 235 (1118)
T KOG1029|consen 223 QSGLPQNQLA-HIW 235 (1118)
T ss_pred hcCCchhhHh-hhe
Confidence 4666666664 344
No 14
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=93.99 E-value=1.3 Score=52.21 Aligned_cols=36 Identities=25% Similarity=0.275 Sum_probs=19.7
Q ss_pred HHhccCCcHHHHHHHH---HHHhcccCccccCccHHHHH
Q 003501 77 LMEESELPLTKLVEEI---HVKLKENGSEKLGVGLAAVK 112 (815)
Q Consensus 77 L~eeS~lpLs~L~~~i---~~~L~~~~~~~~~l~~a~V~ 112 (815)
+-.|+.-|...|+..| -.+|.++|.+--..|...|+
T Consensus 18 id~epn~~fpdl~a~~as~~~~l~~~gk~~~~~t~~~v~ 56 (591)
T KOG2412|consen 18 IDPEPNWNFPDLVAEIASVEKKLNGFGKYPQPITNTTVR 56 (591)
T ss_pred CCCCCCCCchhHHHHhhhhhhhhcccCCCccHHHHHHHH
Confidence 4456666666666665 34466664333344555554
No 15
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.88 E-value=2.2 Score=52.08 Aligned_cols=12 Identities=8% Similarity=0.191 Sum_probs=5.1
Q ss_pred HHHHHHhhhhcc
Q 003501 214 IRVLVDSMLKKN 225 (815)
Q Consensus 214 ~r~~~e~~~qk~ 225 (815)
-|-+++.-.|+.
T Consensus 332 RRq~leeqqqre 343 (1118)
T KOG1029|consen 332 RRQALEEQQQRE 343 (1118)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 16
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.55 E-value=0.53 Score=50.47 Aligned_cols=16 Identities=25% Similarity=0.389 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhhhh
Q 003501 108 LAAVKSAVLFVGQRVM 123 (815)
Q Consensus 108 ~a~V~s~I~~va~R~n 123 (815)
+.++=++|.+|+=+.-
T Consensus 5 v~vlVaa~llV~~i~l 20 (299)
T KOG3054|consen 5 VAVLVAAALLVAVILL 20 (299)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555554433
No 17
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=92.67 E-value=1.1 Score=48.85 Aligned_cols=18 Identities=33% Similarity=0.614 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003501 308 KEQRHREKEEAEMKKKLA 325 (815)
Q Consensus 308 keqkr~ekeea~~k~~~~ 325 (815)
+|..|..|++++++.+..
T Consensus 390 reerrkqkeeeklk~e~q 407 (445)
T KOG2891|consen 390 REERRKQKEEEKLKAEEQ 407 (445)
T ss_pred HHHHHhhhHHHHHHHHHH
Confidence 445555555555555444
No 18
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=92.53 E-value=1.6 Score=51.19 Aligned_cols=13 Identities=23% Similarity=0.539 Sum_probs=8.1
Q ss_pred EeeeCCCcccchh
Q 003501 144 CWETRDVKLLPKS 156 (815)
Q Consensus 144 rWE~~D~k~LP~~ 156 (815)
.|==.++=++|-.
T Consensus 149 eWpG~tqI~IPL~ 161 (489)
T PF05262_consen 149 EWPGKTQIVIPLS 161 (489)
T ss_pred cCCCCceEEEecc
Confidence 3666666677755
No 19
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=91.86 E-value=7.3 Score=42.26 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=10.2
Q ss_pred HHHHHHhhcccCCccc
Q 003501 330 ASMMERFLKRSKILTS 345 (815)
Q Consensus 330 a~~m~rFfkk~k~~~~ 345 (815)
...++.|+...+.-..
T Consensus 223 e~A~~~Wl~~~~~kpk 238 (264)
T PF13904_consen 223 EEAFQKWLKNVKNKPK 238 (264)
T ss_pred HHHHHHHHHHcccCCC
Confidence 3358888877764433
No 20
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=91.80 E-value=4.3 Score=45.22 Aligned_cols=16 Identities=38% Similarity=0.453 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHhHHH
Q 003501 236 REEKILIKQLEKNKRE 251 (815)
Q Consensus 236 ~~e~~~~k~~ek~~k~ 251 (815)
.+|.++++|+++++-+
T Consensus 97 ~aEqErlkQle~er~~ 112 (387)
T COG3064 97 AAEQERLKQLEKERLK 112 (387)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 3555666666665433
No 21
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=91.78 E-value=2.8 Score=51.34 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=13.0
Q ss_pred CCCCCCcCcHHHHHHHHhcCCC
Q 003501 688 STTLISESDLPAIVSVIQSCST 709 (815)
Q Consensus 688 ~kt~Ipd~dLp~Lv~~Ihgs~~ 709 (815)
|.+.|+.+-+|+|+-+|-.-++
T Consensus 666 PTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 666 PTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred ecccccCCCcHHHHHHHHHHHH
Confidence 3445555667777766655444
No 22
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=91.20 E-value=5.5 Score=45.64 Aligned_cols=12 Identities=42% Similarity=0.523 Sum_probs=5.0
Q ss_pred HHHHHHHhHHHH
Q 003501 241 LIKQLEKNKREV 252 (815)
Q Consensus 241 ~~k~~ek~~k~~ 252 (815)
++++++++..+.
T Consensus 102 rlk~le~er~~~ 113 (387)
T PRK09510 102 RLKQLEKERLAA 113 (387)
T ss_pred HHHHHHHHHHHH
Confidence 444444443333
No 23
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=90.87 E-value=1.7 Score=51.19 Aligned_cols=6 Identities=17% Similarity=0.678 Sum_probs=2.7
Q ss_pred CCceEe
Q 003501 620 NQPLII 625 (815)
Q Consensus 620 ~~PlvI 625 (815)
..|++|
T Consensus 434 kCP~~V 439 (591)
T KOG2412|consen 434 KCPYVV 439 (591)
T ss_pred cCCccc
Confidence 345544
No 24
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=90.21 E-value=2.7 Score=51.44 Aligned_cols=12 Identities=42% Similarity=0.664 Sum_probs=6.9
Q ss_pred HHHHHHHhhccc
Q 003501 329 QASMMERFLKRS 340 (815)
Q Consensus 329 qa~~m~rFfkk~ 340 (815)
++.+.++|++.-
T Consensus 290 ~~a~aea~l~~l 301 (1064)
T KOG1144|consen 290 EAALAEAFLKQL 301 (1064)
T ss_pred HHHHHHHHHHHH
Confidence 344566676654
No 25
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=88.00 E-value=32 Score=42.52 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHhh
Q 003501 234 AKREEKILIKQLEKNKREVEKEKKRMDCEQQKEKLHS 270 (815)
Q Consensus 234 a~~~e~~~~k~~ek~~k~~eke~~~~~kE~~~e~~~~ 270 (815)
+...+|+-+.++||.++++++-+...|+++..|++++
T Consensus 482 aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r 518 (697)
T PF09726_consen 482 ARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKAR 518 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778889999999998888888888877776544
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=87.87 E-value=46 Score=42.25 Aligned_cols=44 Identities=23% Similarity=0.126 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhhHHHHHHHHhhhh
Q 003501 162 RIRRTFRKKIHERITAVSAMITALQKSESDPSFINDLMKASKKLGKV 208 (815)
Q Consensus 162 ~~Rr~~R~ki~~r~~Av~~~L~~l~~~~~~~~~~~~~~k~~~kl~k~ 208 (815)
-.-+=+|...++-..++ |.++.-...++++..+++=+..+|+..
T Consensus 723 ara~y~~~~~~eak~~l---l~a~~~~p~~~~v~FN~a~v~kkla~s 766 (1018)
T KOG2002|consen 723 ARAWYEAGKLQEAKEAL---LKARHLAPSNTSVKFNLALVLKKLAES 766 (1018)
T ss_pred HHHHHHhhhHHHHHHHH---HHHHHhCCccchHHhHHHHHHHHHHHH
Confidence 33344555555544444 888888888888888888888888776
No 27
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=87.52 E-value=18 Score=36.84 Aligned_cols=38 Identities=29% Similarity=0.480 Sum_probs=17.2
Q ss_pred HHHHHhHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHH
Q 003501 243 KQLEKNKREVEKEKKRMDCEQQKEKLHSERELKRLQEE 280 (815)
Q Consensus 243 k~~ek~~k~~eke~~~~~kE~~~e~~~~ek~~k~~e~~ 280 (815)
+|++...+..+.|+++...|...|..+..++....+..
T Consensus 65 ~QieEk~r~k~~E~err~~EE~~EE~Rl~rere~~q~~ 102 (157)
T PF15236_consen 65 QQIEEKRRQKQEEEERRRREEEEEEERLAREREELQRQ 102 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444433
No 28
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=85.26 E-value=13 Score=41.98 Aligned_cols=8 Identities=38% Similarity=0.380 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 003501 238 EKILIKQL 245 (815)
Q Consensus 238 e~~~~k~~ 245 (815)
|..+++++
T Consensus 87 eq~r~~~l 94 (346)
T TIGR02794 87 EQARQKEL 94 (346)
T ss_pred HHHHHHHH
Confidence 33344444
No 29
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=84.48 E-value=25 Score=38.83 Aligned_cols=6 Identities=17% Similarity=-0.114 Sum_probs=2.2
Q ss_pred HHhccc
Q 003501 94 VKLKEN 99 (815)
Q Consensus 94 ~~L~~~ 99 (815)
..|.++
T Consensus 97 ~~ldgf 102 (445)
T KOG2891|consen 97 ACLDGF 102 (445)
T ss_pred HHhcCC
Confidence 333333
No 30
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=84.32 E-value=23 Score=41.29 Aligned_cols=12 Identities=17% Similarity=-0.008 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHH
Q 003501 38 RFNEEVKWLFGY 49 (815)
Q Consensus 38 ~~~~e~~~l~~~ 49 (815)
.+++|+..||..
T Consensus 86 ~~qqe~~~LyKe 97 (429)
T PRK00247 86 ELQQKQKDLNKE 97 (429)
T ss_pred HHHHHHHHHHHH
Confidence 355677666665
No 31
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.83 E-value=8.6 Score=41.65 Aligned_cols=7 Identities=14% Similarity=0.634 Sum_probs=3.2
Q ss_pred CCCchhh
Q 003501 385 EINIDDI 391 (815)
Q Consensus 385 ~~~le~l 391 (815)
-|.+++|
T Consensus 214 vV~ledL 220 (299)
T KOG3054|consen 214 VVPLEDL 220 (299)
T ss_pred eeeHHHH
Confidence 3445553
No 32
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=82.83 E-value=1e+02 Score=36.01 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003501 164 RRTFRKKIHERITAVSAM 181 (815)
Q Consensus 164 Rr~~R~ki~~r~~Av~~~ 181 (815)
+|..|..+.+.|.|++.|
T Consensus 110 ~r~qr~~La~~L~A~~r~ 127 (420)
T COG4942 110 EREQRRRLAEQLAALQRS 127 (420)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 356677777766666554
No 33
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=82.35 E-value=1.2 Score=51.35 Aligned_cols=12 Identities=25% Similarity=0.307 Sum_probs=8.8
Q ss_pred cCCCCCCCCCcc
Q 003501 560 PDGYLSEDEGVQ 571 (815)
Q Consensus 560 pdg~Lsd~E~~~ 571 (815)
.|||=+|+|...
T Consensus 98 ddG~~TDnE~GF 109 (458)
T PF10446_consen 98 DDGNETDNEAGF 109 (458)
T ss_pred ccCccCcccccc
Confidence 588988887543
No 34
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=80.55 E-value=5.8 Score=44.06 Aligned_cols=7 Identities=29% Similarity=0.591 Sum_probs=3.2
Q ss_pred HHHHhhh
Q 003501 216 VLVDSML 222 (815)
Q Consensus 216 ~~~e~~~ 222 (815)
.+||.+.
T Consensus 242 ~l~D~~~ 248 (321)
T PF07946_consen 242 YLIDKLA 248 (321)
T ss_pred HHHHHhh
Confidence 3445443
No 35
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=79.69 E-value=33 Score=40.02 Aligned_cols=17 Identities=24% Similarity=0.126 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003501 36 IRRFNEEVKWLFGYYKE 52 (815)
Q Consensus 36 ~~~~~~e~~~l~~~~re 52 (815)
...++=||..|-..|+.
T Consensus 61 m~~lqPel~~iq~kyk~ 77 (429)
T PRK00247 61 AAHIRPKRKALREEYKG 77 (429)
T ss_pred HHHcCHHHHHHHHHHhc
Confidence 45567777777777764
No 36
>PF04747 DUF612: Protein of unknown function, DUF612; InterPro: IPR006836 This family includes several uncharacterised proteins from Caenorhabditis elegans.
Probab=79.43 E-value=56 Score=37.67 Aligned_cols=23 Identities=48% Similarity=0.531 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003501 304 EEADKEQRHREKEEAEMKKKLAL 326 (815)
Q Consensus 304 eeaekeqkr~ekeea~~k~~~~~ 326 (815)
.++++.|+..++.||+|++-++.
T Consensus 124 a~qe~~qke~e~kea~lkklq~e 146 (510)
T PF04747_consen 124 AEQEKIQKEQEKKEAELKKLQAE 146 (510)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Confidence 34556666666667777655443
No 37
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=79.39 E-value=1.4e+02 Score=35.12 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhhhcCCCCc
Q 003501 172 HERITAVSAMITALQKSESDP 192 (815)
Q Consensus 172 ~~r~~Av~~~L~~l~~~~~~~ 192 (815)
.+|-.-|...|.++..+|..+
T Consensus 111 r~qr~~La~~L~A~~r~g~~p 131 (420)
T COG4942 111 REQRRRLAEQLAALQRSGRNP 131 (420)
T ss_pred HHHHHHHHHHHHHHHhccCCC
Confidence 344444555677777776665
No 38
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=79.17 E-value=56 Score=40.94 Aligned_cols=37 Identities=24% Similarity=0.444 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHhhhcccccc-CcccccCchhHHHHHHHhccCC
Q 003501 39 FNEEVKWLFGYYKEMITNQRLTI-DLSECAGSLNGMVAALMEESEL 83 (815)
Q Consensus 39 ~~~e~~~l~~~~re~~~~~~~~~-~~~~~~~~~~~~Va~L~eeS~l 83 (815)
+-+|+..||.. | -++| ||.-| -...++|-.|.+.-+.
T Consensus 385 v~qe~kdLY~i----L---EveF~PL~l~-k~lq~ll~~ls~~~~~ 422 (988)
T KOG2072|consen 385 VDQEVKDLYNI----L---EVEFHPLKLC-KKLQPLLDKLSESPDK 422 (988)
T ss_pred hhHHHHHHHHH----H---HhcCCHHHHH-HHHHHHHHHHHcCCCc
Confidence 34566666654 2 2333 44555 5666677776664443
No 39
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=77.75 E-value=12 Score=44.11 Aligned_cols=29 Identities=14% Similarity=0.258 Sum_probs=24.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 003501 28 TGEDKESRIRRFNEEVKWLFGYYKEMITNQ 57 (815)
Q Consensus 28 ~~~~k~~~~~~~~~e~~~l~~~~re~~~~~ 57 (815)
-.++|-..|+.-++-|+++|.+-|.-| |.
T Consensus 103 ~leekrraieaqkkkmea~fakqrqkl-gk 131 (708)
T KOG3654|consen 103 RLEEKRRAIEAQKKKMEAIFAKQRQKL-GK 131 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-ch
Confidence 357888899999999999999999887 53
No 40
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=75.67 E-value=96 Score=33.49 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=10.2
Q ss_pred HHHHHHHhHHHHHHHHHhhhH
Q 003501 241 LIKQLEKNKREVEKEKKRMDC 261 (815)
Q Consensus 241 ~~k~~ek~~k~~eke~~~~~k 261 (815)
.+..++..++.++-|...+++
T Consensus 34 ~a~~Leek~k~aeeea~~Le~ 54 (246)
T PF00769_consen 34 TAEELEEKLKQAEEEAEELEQ 54 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555444443
No 41
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=72.66 E-value=2.7e+02 Score=35.33 Aligned_cols=19 Identities=16% Similarity=0.055 Sum_probs=14.3
Q ss_pred CchhHHHHHHHhccCCcHH
Q 003501 68 GSLNGMVAALMEESELPLT 86 (815)
Q Consensus 68 ~~~~~~Va~L~eeS~lpLs 86 (815)
...+++-+++..|||+.++
T Consensus 480 iriDH~~~~v~FgsDl~~s 498 (988)
T KOG2072|consen 480 IRIDHESNSVSFGSDLFLS 498 (988)
T ss_pred EEeccccceeeeccccccc
Confidence 4566777778888888886
No 42
>PRK12704 phosphodiesterase; Provisional
Probab=70.34 E-value=1.4e+02 Score=35.81 Aligned_cols=13 Identities=23% Similarity=0.572 Sum_probs=6.2
Q ss_pred HHHHHhCCCCcHH
Q 003501 716 EALQQKFPSISRA 728 (815)
Q Consensus 716 E~lqk~fP~vSKa 728 (815)
|.+...||+|.|+
T Consensus 449 e~i~~~~~gv~~~ 461 (520)
T PRK12704 449 EEIANSFEGVEKA 461 (520)
T ss_pred HHHHHhCCcHHHH
Confidence 3344455555544
No 43
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=67.41 E-value=6.4 Score=42.92 Aligned_cols=36 Identities=8% Similarity=0.098 Sum_probs=18.9
Q ss_pred cceEEeecCCCCCC-----ceeeecCCCcccCCCCCCCCCC
Q 003501 476 WKQLLQFDKSHRPA-----FYGIWPKKSHIVGPRHPLMKDP 511 (815)
Q Consensus 476 ~~K~l~F~en~RPp-----y~GT~~k~s~~v~~r~Pf~kd~ 511 (815)
|+|-+++..+.-|| |--+-++.-++-+-++-|++-.
T Consensus 198 rrKg~ky~k~k~~PCPKCg~et~eTkdLSmStR~hkyGRQ~ 238 (314)
T PF06524_consen 198 RRKGFKYEKGKPIPCPKCGYETQETKDLSMSTRSHKYGRQG 238 (314)
T ss_pred hhcccccccCCCCCCCCCCCcccccccceeeeecchhcccc
Confidence 56777777775555 3333333322334455676653
No 44
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=67.36 E-value=1.3e+02 Score=32.44 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=13.0
Q ss_pred HHHHhhhhcCCCCCCCCcc
Q 003501 116 LFVGQRVMYGVSNADTDIL 134 (815)
Q Consensus 116 ~~va~R~nYG~~~~~~d~L 134 (815)
-+..+|..|++...+-..+
T Consensus 25 ~~~~~~~~srl~p~hrn~~ 43 (217)
T PF10147_consen 25 ELARKRNKSRLRPRHRNIL 43 (217)
T ss_pred HHHHHhhccCCCccccccc
Confidence 3456788888877765553
No 45
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=65.52 E-value=3.8 Score=50.60 Aligned_cols=9 Identities=11% Similarity=0.741 Sum_probs=4.3
Q ss_pred hhhhhhhhh
Q 003501 398 SWHRFGHFV 406 (815)
Q Consensus 398 ~w~~l~~~~ 406 (815)
.|..+....
T Consensus 511 ~~~~~~~~~ 519 (784)
T PF04931_consen 511 AWKTLKKIL 519 (784)
T ss_pred HHHHHHHHH
Confidence 355554433
No 46
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=63.79 E-value=2.1e+02 Score=34.25 Aligned_cols=22 Identities=18% Similarity=0.514 Sum_probs=11.6
Q ss_pred Cchhhhhhhcchhhhhhhhhhccc
Q 003501 387 NIDDIRRSHLSSWHRFGHFVRSNR 410 (815)
Q Consensus 387 ~le~l~r~~~~~w~~l~~~~r~~r 410 (815)
.++++||. ++. ..|-.++...|
T Consensus 251 ~fdp~rre-ia~-~~l~~li~dgr 272 (514)
T TIGR03319 251 GFDPVRRE-IAR-MALEKLIQDGR 272 (514)
T ss_pred CCchHHHH-HHH-HHHHHHHHcCC
Confidence 35666665 332 34555566543
No 47
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=61.38 E-value=8.2 Score=49.92 Aligned_cols=60 Identities=22% Similarity=0.424 Sum_probs=46.8
Q ss_pred cCcHHHHHHHHhcCCCc--HHHHHHHHHHhCCCCcHHHHHHHHHHhhhccC---CCCceEEcHHH
Q 003501 694 ESDLPAIVSVIQSCSTN--MNKILEALQQKFPSISRAQLRNKVREISDFNF---AENRWQVKREI 753 (815)
Q Consensus 694 d~dLp~Lv~~Ihgs~~S--i~~LVE~lqk~fP~vSKa~IKnkIkEiA~r~~---~~krW~VK~Ev 753 (815)
-+=|..||.-+-..+.+ .-.-+..|.+.||+++=.+|+..++++|+|.. .++.|++|+++
T Consensus 695 ~nrLkv~IYRlF~~s~~g~r~I~id~lsk~Fp~~se~siRKrLKecad~kR~G~~~~~W~LK~df 759 (1563)
T KOG0008|consen 695 RNRLKVFIYRLFWKSDSGPRRIRIDDLSKAFPDQSESSIRKRLKECADFKRDGMGKNYWVLKPDF 759 (1563)
T ss_pred HHHHHHHHHHHHHhcCCCCcceehhHHHhhCcccchHHHHHHHHHHHHHhhcCCCCCeeEecccc
Confidence 34477777555544443 33667889999999999999999999999953 67899999854
No 48
>PLN03086 PRLI-interacting factor K; Provisional
Probab=61.07 E-value=51 Score=39.86 Aligned_cols=13 Identities=15% Similarity=0.504 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 003501 283 RDERRREKEEADI 295 (815)
Q Consensus 283 k~ek~~ekee~e~ 295 (815)
|++.++.+|+-|+
T Consensus 34 ~~~~~~~~~~~~~ 46 (567)
T PLN03086 34 KEEAAKQREAIEA 46 (567)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 49
>KOG4363 consensus Putative growth response protein [Signal transduction mechanisms]
Probab=60.05 E-value=9.1 Score=41.56 Aligned_cols=31 Identities=26% Similarity=0.564 Sum_probs=24.5
Q ss_pred CCCCCCCCCCCCCCCCChhhhh------hccCCCCCC
Q 003501 503 PRHPLMKDPDLDYDIDSDEEWE------EEEPGESLS 533 (815)
Q Consensus 503 ~r~Pf~kd~~lDYdyDSd~EWe------eee~GEdl~ 533 (815)
.++||.-..++||-|++.++|. |++.|||++
T Consensus 20 ~~pp~lst~sld~t~~~~~~~sa~g~~de~d~g~d~e 56 (270)
T KOG4363|consen 20 ERPPFLSTYSLDFTLPPNDPFSAKGTGDEEDYGEDEE 56 (270)
T ss_pred ecCCccccccCCCcCCCCCcccccCCchhhhcCCccc
Confidence 4899999999999999999995 334455554
No 50
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=59.76 E-value=5.2 Score=49.43 Aligned_cols=8 Identities=13% Similarity=0.218 Sum_probs=3.1
Q ss_pred HHHhhccc
Q 003501 333 MERFLKRS 340 (815)
Q Consensus 333 m~rFfkk~ 340 (815)
+.+||...
T Consensus 420 ~~~f~~~k 427 (784)
T PF04931_consen 420 FHAFFYFK 427 (784)
T ss_pred HHHhhccc
Confidence 33444333
No 51
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=59.38 E-value=46 Score=37.65 Aligned_cols=8 Identities=25% Similarity=0.335 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 003501 314 EKEEAEMK 321 (815)
Q Consensus 314 ekeea~~k 321 (815)
.++|++.+
T Consensus 155 r~~Eek~R 162 (361)
T KOG3634|consen 155 RLEEEKSR 162 (361)
T ss_pred HHHHHHHH
Confidence 33444433
No 52
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=59.27 E-value=6.7 Score=48.87 Aligned_cols=20 Identities=10% Similarity=-0.094 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhhhhcCCC
Q 003501 108 LAAVKSAVLFVGQRVMYGVS 127 (815)
Q Consensus 108 ~a~V~s~I~~va~R~nYG~~ 127 (815)
.+.|..+.+.|-+|--||++
T Consensus 675 Dpei~~~AL~vIincVc~pp 694 (1516)
T KOG1832|consen 675 DPEIIQPALNVIINCVCPPP 694 (1516)
T ss_pred CHHHHHHHHhhhheeecCCC
Confidence 45555555666666666654
No 53
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=58.57 E-value=3.2 Score=39.01 Aligned_cols=6 Identities=17% Similarity=0.628 Sum_probs=2.5
Q ss_pred HHhhHh
Q 003501 607 KYLSSL 612 (815)
Q Consensus 607 k~l~~l 612 (815)
.||.++
T Consensus 51 ~~~~~v 56 (101)
T PF09026_consen 51 AYFTMV 56 (101)
T ss_dssp HHHHHH
T ss_pred hhcchH
Confidence 344443
No 54
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=57.64 E-value=4e+02 Score=33.34 Aligned_cols=14 Identities=29% Similarity=0.662 Sum_probs=7.4
Q ss_pred ccccccCCCCCCch
Q 003501 376 VDSTLSSNDEINID 389 (815)
Q Consensus 376 mD~~L~s~~~~~le 389 (815)
|...|+..+.+.+|
T Consensus 606 LE~sLsaEtriKld 619 (697)
T PF09726_consen 606 LENSLSAETRIKLD 619 (697)
T ss_pred HHHhhhHHHHHHHH
Confidence 55556555555543
No 55
>PRK12704 phosphodiesterase; Provisional
Probab=57.48 E-value=4.1e+02 Score=31.94 Aligned_cols=6 Identities=67% Similarity=1.021 Sum_probs=2.5
Q ss_pred chhhhh
Q 003501 388 IDDIRR 393 (815)
Q Consensus 388 le~l~r 393 (815)
+++++|
T Consensus 258 ~~~~rr 263 (520)
T PRK12704 258 FDPIRR 263 (520)
T ss_pred CChhhH
Confidence 344443
No 56
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=57.38 E-value=2.5e+02 Score=29.32 Aligned_cols=6 Identities=17% Similarity=0.667 Sum_probs=2.4
Q ss_pred HHHHHH
Q 003501 214 IRVLVD 219 (815)
Q Consensus 214 ~r~~~e 219 (815)
.+.|.|
T Consensus 25 tkiLAE 30 (171)
T PF05672_consen 25 TKILAE 30 (171)
T ss_pred HHHHHH
Confidence 444433
No 57
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=57.24 E-value=12 Score=40.93 Aligned_cols=10 Identities=20% Similarity=0.524 Sum_probs=4.8
Q ss_pred CCCCCCCChh
Q 003501 512 DLDYDIDSDE 521 (815)
Q Consensus 512 ~lDYdyDSd~ 521 (815)
+.+|.|.+|+
T Consensus 266 ~~~~~~~~dd 275 (314)
T PF06524_consen 266 GGNYGYEDDD 275 (314)
T ss_pred CCCCcccccc
Confidence 3455555443
No 58
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=56.65 E-value=3e+02 Score=30.08 Aligned_cols=30 Identities=13% Similarity=0.161 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCccc
Q 003501 316 EEAEMKKKLALQKQASMMERFLKRSKILTS 345 (815)
Q Consensus 316 eea~~k~~~~~~kqa~~m~rFfkk~k~~~~ 345 (815)
.+.+.+++.+...=..-|.+-=.+++|...
T Consensus 213 ~e~~eRk~~ae~A~~~Wl~~~~~kpkpvp~ 242 (264)
T PF13904_consen 213 QEEQERKEQAEEAFQKWLKNVKNKPKPVPL 242 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCCCCc
Confidence 344456666666667778888888876654
No 59
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=56.53 E-value=4.2e+02 Score=31.79 Aligned_cols=8 Identities=0% Similarity=0.173 Sum_probs=3.0
Q ss_pred cCcHHHHH
Q 003501 694 ESDLPAIV 701 (815)
Q Consensus 694 d~dLp~Lv 701 (815)
|.+...|.
T Consensus 475 d~~~~~la 482 (514)
T TIGR03319 475 DDQAVVLA 482 (514)
T ss_pred hHHHHHHH
Confidence 33333333
No 60
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=56.12 E-value=87 Score=37.86 Aligned_cols=24 Identities=21% Similarity=0.529 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhhhcccccc----Ccccc
Q 003501 42 EVKWLFGYYKEMITNQRLTI----DLSEC 66 (815)
Q Consensus 42 e~~~l~~~~re~~~~~~~~~----~~~~~ 66 (815)
-|..||.+|--|. |.++.. |.+-|
T Consensus 421 DLKnlFSKyGKVv-GAKVVTNaRsPGaRC 448 (940)
T KOG4661|consen 421 DLKNLFSKYGKVV-GAKVVTNARSPGARC 448 (940)
T ss_pred HHHHHHHHhccee-ceeeeecCCCCCcce
Confidence 5778999999999 888765 66655
No 61
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=55.81 E-value=4.3e+02 Score=31.61 Aligned_cols=27 Identities=15% Similarity=0.158 Sum_probs=14.3
Q ss_pred cHHHHHHHHhcCCCc-----HHHHHHHHHHhC
Q 003501 696 DLPAIVSVIQSCSTN-----MNKILEALQQKF 722 (815)
Q Consensus 696 dLp~Lv~~Ihgs~~S-----i~~LVE~lqk~f 722 (815)
+--.++..+...+-+ |.+||-..|...
T Consensus 561 ~t~~~~~EaAkkTeGfSGREiakLva~vQAav 592 (630)
T KOG0742|consen 561 DTGRKCSEAAKKTEGFSGREIAKLVASVQAAV 592 (630)
T ss_pred hHHHHHHHHHHhccCCcHHHHHHHHHHHHHHH
Confidence 445555555544432 566666666443
No 62
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=55.66 E-value=2.6e+02 Score=35.26 Aligned_cols=15 Identities=47% Similarity=0.694 Sum_probs=5.8
Q ss_pred HHHHHHHhHHHHHHH
Q 003501 241 LIKQLEKNKREVEKE 255 (815)
Q Consensus 241 ~~k~~ek~~k~~eke 255 (815)
++..++.+.++.+.+
T Consensus 521 li~~l~~~~~~~e~~ 535 (782)
T PRK00409 521 LIASLEELERELEQK 535 (782)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444443333333
No 63
>PRK00106 hypothetical protein; Provisional
Probab=55.58 E-value=3.2e+02 Score=33.08 Aligned_cols=21 Identities=24% Similarity=0.559 Sum_probs=10.8
Q ss_pred chhhhhhhcchhhhhhhhhhccc
Q 003501 388 IDDIRRSHLSSWHRFGHFVRSNR 410 (815)
Q Consensus 388 le~l~r~~~~~w~~l~~~~r~~r 410 (815)
++++||. ++. ..|-.++...|
T Consensus 273 fdpvRRe-iAr-~~le~Li~dgr 293 (535)
T PRK00106 273 FDPIRRE-IAR-MTLESLIKDGR 293 (535)
T ss_pred CChHHHH-HHH-HHHHHHHHcCC
Confidence 5666665 332 34555555543
No 64
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=55.55 E-value=4e+02 Score=31.17 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 003501 165 RTFRKKIHERITAVSAMITALQK 187 (815)
Q Consensus 165 r~~R~ki~~r~~Av~~~L~~l~~ 187 (815)
..+|+++..+++-|-+.+-.|++
T Consensus 208 ~qe~QLae~~lq~vq~~C~pLDk 230 (442)
T PF06637_consen 208 QQERQLAEEQLQKVQALCLPLDK 230 (442)
T ss_pred HHHHHHHHHHHHHHHHHhcccch
Confidence 45788999999999888888885
No 65
>PF12157 DUF3591: Protein of unknown function (DUF3591); InterPro: IPR022591 This functionally uncharacterised domain is found centrally in the eukaryotic transcription initiation factor TFIID subunit 1.
Probab=54.89 E-value=16 Score=42.91 Aligned_cols=59 Identities=24% Similarity=0.458 Sum_probs=43.0
Q ss_pred CcCcHHHHHHHHhcCCCcHHHHHHHHHHhCCCCcHHHHHHHHHHhhhccCC---CCceEEcH
Q 003501 693 SESDLPAIVSVIQSCSTNMNKILEALQQKFPSISRAQLRNKVREISDFNFA---ENRWQVKR 751 (815)
Q Consensus 693 pd~dLp~Lv~~Ihgs~~Si~~LVE~lqk~fP~vSKa~IKnkIkEiA~r~~~---~krW~VK~ 751 (815)
.-.-|..+|.-+-.......--++.+.++||+.|-.+|+..+++.|+|... .+-|++|+
T Consensus 239 ~knrL~~~iyRlf~~~~~~ri~~~di~~~Fp~~se~~iRkrLKe~~~~~R~g~~~~~W~lk~ 300 (457)
T PF12157_consen 239 SKNRLKMIIYRLFNKSQPRRIKVDDIKKHFPDQSESQIRKRLKEFADFQRTGDDSGWWVLKP 300 (457)
T ss_pred HHHHHHHHHHHHHhhccCCccCHHHHHHhCCCCcHHHHHHHHHHHHhccCCCCCCCeEEECC
Confidence 334566666333333333334567889999999999999999999999653 67899887
No 66
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=53.73 E-value=1.1e+02 Score=36.99 Aligned_cols=7 Identities=29% Similarity=0.653 Sum_probs=4.2
Q ss_pred ceEEeee
Q 003501 141 SLWCWET 147 (815)
Q Consensus 141 ~lWrWE~ 147 (815)
-||.=-+
T Consensus 407 NlWVSGL 413 (940)
T KOG4661|consen 407 NLWVSGL 413 (940)
T ss_pred ceeeecc
Confidence 5776543
No 67
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=52.16 E-value=57 Score=38.48 Aligned_cols=11 Identities=27% Similarity=0.915 Sum_probs=7.6
Q ss_pred CceEEeeeCCC
Q 003501 140 ASLWCWETRDV 150 (815)
Q Consensus 140 ~~lWrWE~~D~ 150 (815)
-=||-|-+...
T Consensus 218 ~llw~~dvt~~ 228 (460)
T KOG1363|consen 218 FLLWGWDVTES 228 (460)
T ss_pred eeeecccccCc
Confidence 35899976554
No 68
>PF05917 DUF874: Helicobacter pylori protein of unknown function (DUF874); InterPro: IPR008592 This family consists of several hypothetical proteins specific to Helicobacter pylori. The function of this family is unknown.
Probab=51.99 E-value=1.5e+02 Score=33.34 Aligned_cols=10 Identities=40% Similarity=0.993 Sum_probs=5.6
Q ss_pred CCChhhhhhc
Q 003501 517 IDSDEEWEEE 526 (815)
Q Consensus 517 yDSd~EWeee 526 (815)
+.--+||..|
T Consensus 322 f~vteewq~e 331 (398)
T PF05917_consen 322 FNVTEEWQNE 331 (398)
T ss_pred ccchHHHHhh
Confidence 3445778643
No 69
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=50.85 E-value=8.2 Score=43.06 Aligned_cols=13 Identities=54% Similarity=0.849 Sum_probs=8.4
Q ss_pred CCCCCCCChhhhh
Q 003501 512 DLDYDIDSDEEWE 524 (815)
Q Consensus 512 ~lDYdyDSd~EWe 524 (815)
+.+-+-++|.+|+
T Consensus 90 ~~~~~~~~d~ewe 102 (324)
T PF05285_consen 90 GEEEDDDDDEEWE 102 (324)
T ss_pred cccCccccccccc
Confidence 3455667777784
No 70
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=50.74 E-value=2.2e+02 Score=35.70 Aligned_cols=18 Identities=28% Similarity=0.551 Sum_probs=8.1
Q ss_pred HHHHHHHhHHHHHHHHHh
Q 003501 241 LIKQLEKNKREVEKEKKR 258 (815)
Q Consensus 241 ~~k~~ek~~k~~eke~~~ 258 (815)
++..++.+.++.+.++..
T Consensus 516 li~~L~~~~~~~e~~~~~ 533 (771)
T TIGR01069 516 LIEKLSALEKELEQKNEH 533 (771)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444333
No 71
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=50.65 E-value=1.8e+02 Score=37.33 Aligned_cols=34 Identities=15% Similarity=0.085 Sum_probs=15.9
Q ss_pred cccCchhHHHHHH-HhccCCcHHHHHHHHHHHhcc
Q 003501 65 ECAGSLNGMVAAL-MEESELPLTKLVEEIHVKLKE 98 (815)
Q Consensus 65 ~~~~~~~~~Va~L-~eeS~lpLs~L~~~i~~~L~~ 98 (815)
++|+-...-++.+ |.-+..++.+-..++..-|..
T Consensus 525 ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~ 559 (1018)
T KOG2002|consen 525 EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI 559 (1018)
T ss_pred HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc
Confidence 3344444444444 444444555555555444444
No 72
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=50.61 E-value=4.7e+02 Score=30.59 Aligned_cols=28 Identities=11% Similarity=0.257 Sum_probs=16.7
Q ss_pred CCCChhhHHHHHH---HHHHHHHHHHHHHHH
Q 003501 25 PALTGEDKESRIR---RFNEEVKWLFGYYKE 52 (815)
Q Consensus 25 ~~~~~~~k~~~~~---~~~~e~~~l~~~~re 52 (815)
-++|.-.|++... ..+.+++.+-.-||.
T Consensus 88 LN~t~~~K~~imq~ll~~rrdl~rinasfrQ 118 (442)
T PF06637_consen 88 LNLTTRAKDAIMQMLLNARRDLDRINASFRQ 118 (442)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 3466677776443 445566666666665
No 73
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=50.39 E-value=1.8e+02 Score=31.30 Aligned_cols=11 Identities=45% Similarity=0.700 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 003501 306 ADKEQRHREKE 316 (815)
Q Consensus 306 aekeqkr~eke 316 (815)
+.|+.||+.|+
T Consensus 194 k~K~aKkk~k~ 204 (217)
T PF10147_consen 194 KKKEAKKKEKE 204 (217)
T ss_pred HHHHHHHHHHH
Confidence 33444444444
No 74
>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein. Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).
Probab=50.23 E-value=93 Score=37.09 Aligned_cols=16 Identities=44% Similarity=0.721 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 003501 308 KEQRHREKEEAEMKKK 323 (815)
Q Consensus 308 keqkr~ekeea~~k~~ 323 (815)
.+++|+.|++.+..+.
T Consensus 310 EEEkRr~kEeierrra 325 (492)
T PF02029_consen 310 EEEKRREKEEIERRRA 325 (492)
T ss_pred hhhhhhhhHHHHHhhh
Confidence 3345555555444333
No 75
>PRK11637 AmiB activator; Provisional
Probab=49.56 E-value=4.7e+02 Score=30.20 Aligned_cols=13 Identities=8% Similarity=0.166 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHH
Q 003501 168 RKKIHERITAVSA 180 (815)
Q Consensus 168 R~ki~~r~~Av~~ 180 (815)
+..+..|+.++|.
T Consensus 123 ~~~l~~rlra~Y~ 135 (428)
T PRK11637 123 ERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555554
No 76
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=48.71 E-value=3.5e+02 Score=28.48 Aligned_cols=15 Identities=7% Similarity=0.423 Sum_probs=8.9
Q ss_pred HHHHHHHHHHhhccc
Q 003501 326 LQKQASMMERFLKRS 340 (815)
Q Consensus 326 ~~kqa~~m~rFfkk~ 340 (815)
...+..++++|+..-
T Consensus 186 ~~~~~~lI~~~i~~l 200 (205)
T PRK06231 186 REDDDKLVDEFIREL 200 (205)
T ss_pred HHHHHHHHHHHHHHc
Confidence 344566777777543
No 77
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=47.77 E-value=3.1e+02 Score=28.78 Aligned_cols=16 Identities=13% Similarity=0.389 Sum_probs=9.5
Q ss_pred HHHHHHHHHHhhcccC
Q 003501 326 LQKQASMMERFLKRSK 341 (815)
Q Consensus 326 ~~kqa~~m~rFfkk~k 341 (815)
+.....++..||..-.
T Consensus 76 Le~~ee~l~~~~~~~~ 91 (194)
T COG1390 76 LEAKEEILESVFEAVE 91 (194)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444556777776653
No 78
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=46.98 E-value=3e+02 Score=34.47 Aligned_cols=81 Identities=22% Similarity=0.413 Sum_probs=44.0
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003501 239 KILIKQLEKNKREVEKEKKRMDCEQQKEK-LHSERELKRLQEEAERDERRREKEEADIRKQIRKQQEEADKEQRHREKEE 317 (815)
Q Consensus 239 ~~~~k~~ek~~k~~eke~~~~~kE~~~e~-~~~ek~~k~~e~~~~k~ek~~ekee~e~~k~~~k~~eeaekeqkr~ekee 317 (815)
+-+-+|.-.+++..|||++|.+-+++.+- .+.|..++|-+.+.-...+--..|-.-+++|++++-|.-|-++..|-..|
T Consensus 789 rflRrQeLreLR~LQkeE~R~qqqL~~k~~~q~Eq~~rrFeqE~~~kkr~~d~EmenlErqQkq~iE~~Eq~h~~rlR~e 868 (1187)
T KOG0579|consen 789 RFLRRQELRELRRLQKEEARQQQQLQAKGIKQVEQQARRFEQEQTNKKRTSDLEMENLERQQKQEIEDTEQAHEHRLRNE 868 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777888888999888777666642 22333334433332111122234444455666655555555555555545
Q ss_pred HH
Q 003501 318 AE 319 (815)
Q Consensus 318 a~ 319 (815)
|+
T Consensus 869 ak 870 (1187)
T KOG0579|consen 869 AK 870 (1187)
T ss_pred HH
Confidence 44
No 79
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=46.55 E-value=1.4e+02 Score=33.59 Aligned_cols=25 Identities=8% Similarity=0.159 Sum_probs=12.6
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHH
Q 003501 151 KLLPKSVRGSLRIRRTFRKKIHERITAV 178 (815)
Q Consensus 151 k~LP~~~r~~~~~Rr~~R~ki~~r~~Av 178 (815)
.+.|..+-+..-.+-. .|+.|+.+|
T Consensus 57 ~fr~q~F~D~~vekEV---~iRkrv~~i 81 (309)
T TIGR00570 57 NFRVQLFEDPTVEKEV---DIRKRVLKI 81 (309)
T ss_pred hccccccccHHHHHHH---HHHHHHHHH
Confidence 3345555554444322 366666666
No 80
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.22 E-value=90 Score=36.41 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhhcccccc
Q 003501 43 VKWLFGYYKEMITNQRLTI 61 (815)
Q Consensus 43 ~~~l~~~~re~~~~~~~~~ 61 (815)
+.+||-||---.+|.+...
T Consensus 114 v~~Ll~y~~nY~~GK~kN~ 132 (440)
T KOG2357|consen 114 VAILLLYAANYFTGKRKNA 132 (440)
T ss_pred HHHHHHHHHHHHhcchhhH
Confidence 3577777776665555443
No 81
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=46.05 E-value=1.1e+02 Score=36.28 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=9.1
Q ss_pred hhhhccCCCCChhhHHHHHH
Q 003501 18 LKRKRAWPALTGEDKESRIR 37 (815)
Q Consensus 18 ~~~~~~~~~~~~~~k~~~~~ 37 (815)
+||=-..|++|-++.-..+.
T Consensus 222 LKRLdI~PvVCnVEQVRiLR 241 (641)
T KOG3915|consen 222 LKRLDITPVVCNVEQVRILR 241 (641)
T ss_pred hhccceeeeeechHHHHHHh
Confidence 34444445555555433333
No 82
>COG5179 TAF1 Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=45.97 E-value=18 Score=43.62 Aligned_cols=67 Identities=19% Similarity=0.283 Sum_probs=52.9
Q ss_pred CcCcHHHHHHHHhcCCCcHHHHHHHHHHhCCCCcHHHHHHHHHHhhhccC--CCCceEEcHH--HHHHcCC
Q 003501 693 SESDLPAIVSVIQSCSTNMNKILEALQQKFPSISRAQLRNKVREISDFNF--AENRWQVKRE--ILIELGY 759 (815)
Q Consensus 693 pd~dLp~Lv~~Ihgs~~Si~~LVE~lqk~fP~vSKa~IKnkIkEiA~r~~--~~krW~VK~E--vL~~~gL 759 (815)
...-|.+++.-|-++..+.+..+.-|-++||..+--+++..++|+++|.+ .++.|++|+. +|+.-++
T Consensus 598 ~knRLKm~~fRl~n~~~~g~l~I~ql~khFpdq~egq~Rq~lKEfm~y~kdGp~g~W~Lk~~e~lldee~~ 668 (968)
T COG5179 598 CKNRLKMAAFRLFNSKEGGSLRISQLDKHFPDQSEGQKRQWLKEFMDYVKDGPDGVWVLKPSEALLDEEDL 668 (968)
T ss_pred HhhhHHHHHHHHhhcCCCCceeeehhhhhCCCcchhHHHHHHHHHHHHhhcCCCceEEeccccccCChhhh
Confidence 44568888877777777766777789999999999999999999999964 5589999863 3444444
No 83
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=45.58 E-value=5.7e+02 Score=30.06 Aligned_cols=15 Identities=27% Similarity=0.554 Sum_probs=10.7
Q ss_pred HHHHHHHHHhhcccC
Q 003501 327 QKQASMMERFLKRSK 341 (815)
Q Consensus 327 ~kqa~~m~rFfkk~k 341 (815)
..|..++++|+.+-.
T Consensus 141 ~~~~~lId~~i~~l~ 155 (445)
T PRK13428 141 AQQSATVDRFLDELD 155 (445)
T ss_pred HHHHHHHHHHHHHhh
Confidence 345688999996663
No 84
>PF11208 DUF2992: Protein of unknown function (DUF2992); InterPro: IPR016787 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=45.31 E-value=89 Score=31.08 Aligned_cols=15 Identities=27% Similarity=0.251 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHHhH
Q 003501 235 KREEKILIKQLEKNK 249 (815)
Q Consensus 235 ~~~e~~~~k~~ek~~ 249 (815)
..|.|-+|++..|+.
T Consensus 64 ~~NPKR~qR~a~ke~ 78 (132)
T PF11208_consen 64 KINPKRLQREAKKEM 78 (132)
T ss_pred CCChhHHHHHHHHhh
Confidence 335655655554443
No 85
>PF03879 Cgr1: Cgr1 family; InterPro: IPR005579 Cgr1 is involved in nucleolar integrity and is required for processing pre-rRNA for the 60S ribosome subunit. In Saccharomyces cerevisiae, this protein is conserved and contributes to compartmentalisation of nucleolar constituents []. Cgr1 is a small hydrophilic protein and members of this family are coiled-coil proteins []. Its primary role appears to be in ribosome biogenesis [, ]. Expression of CGR1 is also associated with a cessation of yeast cell growth, which is a prerequisite for germination in this organism [].
Probab=44.83 E-value=2.8e+02 Score=26.87 Aligned_cols=22 Identities=36% Similarity=0.320 Sum_probs=13.6
Q ss_pred hHHhhHHHHHHHHHHHHhHHHH
Q 003501 231 EKDAKREEKILIKQLEKNKREV 252 (815)
Q Consensus 231 ~k~a~~~e~~~~k~~ek~~k~~ 252 (815)
.+.+++.+...+|+.+++++++
T Consensus 35 kr~~~R~~~~~~K~~ekElKeE 56 (108)
T PF03879_consen 35 KRMEKRLELKAIKEKEKELKEE 56 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666777777776543
No 86
>PLN03086 PRLI-interacting factor K; Provisional
Probab=44.59 E-value=1.2e+02 Score=36.83 Aligned_cols=17 Identities=35% Similarity=0.470 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003501 305 EADKEQRHREKEEAEMK 321 (815)
Q Consensus 305 eaekeqkr~ekeea~~k 321 (815)
||.--|+|.+.-+|.++
T Consensus 45 ~~~~~~~~~~~~~~~~~ 61 (567)
T PLN03086 45 EAAQRSRRLDAIEAQIK 61 (567)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444455554444444
No 87
>PF04615 Utp14: Utp14 protein; InterPro: IPR006709 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This entry contains Utp14, a large ribonuclear protein associated with snoRNA U3 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=43.43 E-value=3.6e+02 Score=33.50 Aligned_cols=31 Identities=16% Similarity=0.279 Sum_probs=19.1
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003501 153 LPKSVRGSLRIRRTFRKKIHERITAVSAMITA 184 (815)
Q Consensus 153 LP~~~r~~~~~Rr~~R~ki~~r~~Av~~~L~~ 184 (815)
||+..++++ .|.++-.+++..+.---..+..
T Consensus 102 L~~~~~~r~-~R~~ay~~~k~~~~kW~~~V~~ 132 (735)
T PF04615_consen 102 LPKREQERI-ERKAAYEKTKKELDKWDPTVKR 132 (735)
T ss_pred CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 777777664 4556667777766655444443
No 88
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=43.09 E-value=4.5e+02 Score=28.17 Aligned_cols=14 Identities=21% Similarity=0.472 Sum_probs=9.3
Q ss_pred HHHHHHHHHhhccc
Q 003501 327 QKQASMMERFLKRS 340 (815)
Q Consensus 327 ~kqa~~m~rFfkk~ 340 (815)
..+..++++|+.+-
T Consensus 144 ~~~~~lid~~i~~l 157 (246)
T TIGR03321 144 DLEERMVDVFVQRL 157 (246)
T ss_pred HHHHHHHHHHHHHh
Confidence 34567778888665
No 89
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=42.85 E-value=1.4e+02 Score=35.74 Aligned_cols=14 Identities=21% Similarity=0.252 Sum_probs=7.9
Q ss_pred hccCCcHHHHHHHH
Q 003501 79 EESELPLTKLVEEI 92 (815)
Q Consensus 79 eeS~lpLs~L~~~i 92 (815)
-|.++.+.+|-..|
T Consensus 193 ~ey~~siekln~~l 206 (708)
T KOG3654|consen 193 GEYNRSIEKLNAAL 206 (708)
T ss_pred HHHHHHHHHHHHHH
Confidence 34556666665555
No 90
>PF11705 RNA_pol_3_Rpc31: DNA-directed RNA polymerase III subunit Rpc31; InterPro: IPR024661 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA polymerase III-specific, and form the functionally distinct groups: (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in Saccharomyces cerevisiae and Homo sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain []. This entry represents the Rpc31 subunit.
Probab=42.76 E-value=20 Score=37.99 Aligned_cols=9 Identities=22% Similarity=0.671 Sum_probs=5.3
Q ss_pred CCCCCCCCC
Q 003501 561 DGYLSEDEG 569 (815)
Q Consensus 561 dg~Lsd~E~ 569 (815)
+.|++++|+
T Consensus 211 ~~YFDnGed 219 (233)
T PF11705_consen 211 ENYFDNGED 219 (233)
T ss_pred hccCCCCCc
Confidence 346776665
No 91
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=42.70 E-value=5.4e+02 Score=29.19 Aligned_cols=8 Identities=13% Similarity=0.139 Sum_probs=3.0
Q ss_pred HHHHHhhh
Q 003501 215 RVLVDSML 222 (815)
Q Consensus 215 r~~~e~~~ 222 (815)
-.||=+|.
T Consensus 103 Edii~nL~ 110 (309)
T TIGR00570 103 EDIVYNLT 110 (309)
T ss_pred HHHHHHhh
Confidence 33333333
No 92
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=42.38 E-value=5.6e+02 Score=32.30 Aligned_cols=6 Identities=33% Similarity=0.811 Sum_probs=2.5
Q ss_pred CCCCch
Q 003501 188 SESDPS 193 (815)
Q Consensus 188 ~~~~~~ 193 (815)
.|+++.
T Consensus 413 ~GtD~~ 418 (771)
T TIGR01069 413 AGTDPD 418 (771)
T ss_pred CCCCHH
Confidence 344443
No 93
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=41.58 E-value=66 Score=33.98 Aligned_cols=41 Identities=32% Similarity=0.550 Sum_probs=16.2
Q ss_pred HHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 003501 252 VEKEKKRMDCEQQKEKLHSERELKRLQEEAERDERRREKEE 292 (815)
Q Consensus 252 ~eke~~~~~kE~~~e~~~~ek~~k~~e~~~~k~ek~~ekee 292 (815)
.|-|++|.+||.+.+...=+++-.+.++..-.++..||||+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (197)
T PRK12585 126 EQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREE 166 (197)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 34444444444444333333333333333333333444444
No 94
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=41.14 E-value=4.1e+02 Score=27.15 Aligned_cols=15 Identities=0% Similarity=-0.155 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhhccc
Q 003501 326 LQKQASMMERFLKRS 340 (815)
Q Consensus 326 ~~kqa~~m~rFfkk~ 340 (815)
...+..+++.|+.+-
T Consensus 162 ~~~~~~lid~~i~~l 176 (184)
T CHL00019 162 NELHLRTINANIGLL 176 (184)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555666666554
No 95
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=40.69 E-value=4.3e+02 Score=27.24 Aligned_cols=13 Identities=46% Similarity=0.396 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHhH
Q 003501 237 EEKILIKQLEKNK 249 (815)
Q Consensus 237 ~e~~~~k~~ek~~ 249 (815)
+||.++|+.+++.
T Consensus 68 eEk~r~k~~E~er 80 (157)
T PF15236_consen 68 EEKRRQKQEEEER 80 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 4444555444443
No 96
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=38.96 E-value=5.6e+02 Score=28.13 Aligned_cols=12 Identities=25% Similarity=0.288 Sum_probs=7.7
Q ss_pred HHHHHHHHHHhh
Q 003501 43 VKWLFGYYKEMI 54 (815)
Q Consensus 43 ~~~l~~~~re~~ 54 (815)
+.+|+..|-+.+
T Consensus 10 L~~L~~~Yv~aI 21 (297)
T PF02841_consen 10 LAELVKSYVDAI 21 (297)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 556666666655
No 97
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=38.68 E-value=4.4e+02 Score=26.84 Aligned_cols=11 Identities=9% Similarity=0.558 Sum_probs=6.7
Q ss_pred HHHHhhcccCC
Q 003501 332 MMERFLKRSKI 342 (815)
Q Consensus 332 ~m~rFfkk~k~ 342 (815)
+-+.||...+-
T Consensus 131 iAsk~~~~~~~ 141 (154)
T PRK06568 131 LVSEYFQSVKL 141 (154)
T ss_pred HHHHHHHHhcc
Confidence 44568876653
No 98
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=38.58 E-value=22 Score=44.72 Aligned_cols=31 Identities=29% Similarity=0.437 Sum_probs=24.5
Q ss_pred CchhHHHHHHHhccCCcHHHHHHHHHHHhccc
Q 003501 68 GSLNGMVAALMEESELPLTKLVEEIHVKLKEN 99 (815)
Q Consensus 68 ~~~~~~Va~L~eeS~lpLs~L~~~i~~~L~~~ 99 (815)
.+++.+|..++.+| -|=.+|.--|+.+|..-
T Consensus 839 ~~~~~~v~~~aq~s-fp~~elL~li~~HL~ss 869 (1516)
T KOG1832|consen 839 STTQEMVTPLAQES-FPSNELLSLIKKHLASS 869 (1516)
T ss_pred hhHHhhhhhhhhcc-CCHHHHHHHHHHHHhhc
Confidence 47888888888887 46688888888888764
No 99
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=38.54 E-value=1.1e+03 Score=31.54 Aligned_cols=63 Identities=16% Similarity=0.229 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccCcccccCchhHHHHHHHhccCCcHHHHHHHHHHHhcc
Q 003501 34 SRIRRFNEEVKWLFGYYKEMITNQRLTIDLSECAGSLNGMVAALMEESELPLTKLVEEIHVKLKE 98 (815)
Q Consensus 34 ~~~~~~~~e~~~l~~~~re~~~~~~~~~~~~~~~~~~~~~Va~L~eeS~lpLs~L~~~i~~~L~~ 98 (815)
.++..-++|+..|+...++.||... .++.+|..--..|++..+--+.--|..|+..|...+..
T Consensus 1464 ~q~~~s~~el~~Li~~v~~Flt~~~--adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~s 1526 (1758)
T KOG0994|consen 1464 SQMEESNRELRNLIQQVRDFLTQPD--ADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVAS 1526 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHh
Confidence 3556677899999999999883332 23333311122222222222222244566666555544
No 100
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=36.97 E-value=5.5e+02 Score=27.46 Aligned_cols=41 Identities=7% Similarity=0.115 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCCcccCcCCCceEEeeeCCC
Q 003501 108 LAAVKSAVLFVGQRVMYGVSNADTDILEDDAEASLWCWETRDV 150 (815)
Q Consensus 108 ~a~V~s~I~~va~R~nYG~~~~~~d~Led~~~~~lWrWE~~D~ 150 (815)
++.+++..+..+-=.++.+.+-+....+.+-+-.+=|| +++
T Consensus 12 l~~~r~~~n~~~~a~s~ap~SrG~~~~~P~~~~~~~Rw--P~h 52 (225)
T KOG4848|consen 12 LSRKRMLRNWRLLARSFAPNSRGSEEIAPKVDVSFLRW--PRH 52 (225)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCC--CcH
Confidence 56677777766666666654432222345555677788 676
No 101
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=36.88 E-value=24 Score=43.77 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 003501 34 SRIRRFNEEVKWLFGYYKEMI 54 (815)
Q Consensus 34 ~~~~~~~~e~~~l~~~~re~~ 54 (815)
.+|..|...-..|+..|-+..
T Consensus 167 ~~VeKl~e~G~~lm~qdae~f 187 (988)
T KOG2038|consen 167 DVVEKLLELGKDLMAQDAELF 187 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555444
No 102
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=36.69 E-value=6.5e+02 Score=28.18 Aligned_cols=36 Identities=31% Similarity=0.374 Sum_probs=21.3
Q ss_pred HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 003501 253 EKEKKRMDCEQQKEKLHSERELKRLQEEAERDERRR 288 (815)
Q Consensus 253 eke~~~~~kE~~~e~~~~ek~~k~~e~~~~k~ek~~ 288 (815)
+=+.+||+.++.....+++...+.+++-..|.|..|
T Consensus 114 ~LaRkR~~~e~~~qr~~n~e~lk~QEes~~rqE~~R 149 (276)
T PF12037_consen 114 ELARKRYQDELEQQRRRNEELLKMQEESVIRQEQMR 149 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334666666666666666666666665554444333
No 103
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=34.60 E-value=5e+02 Score=26.24 Aligned_cols=15 Identities=13% Similarity=0.235 Sum_probs=8.9
Q ss_pred HHHHHHHHHHhhccc
Q 003501 326 LQKQASMMERFLKRS 340 (815)
Q Consensus 326 ~~kqa~~m~rFfkk~ 340 (815)
...+..++++|+..-
T Consensus 157 ~~~~~~li~~~i~~l 171 (174)
T PRK07352 157 EDAQQRLIDRSIANL 171 (174)
T ss_pred HHHHHHHHHHHHHhh
Confidence 344556777777543
No 104
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=34.53 E-value=12 Score=37.63 Aligned_cols=12 Identities=50% Similarity=0.650 Sum_probs=0.9
Q ss_pred CCCCChhhhhhc
Q 003501 515 YDIDSDEEWEEE 526 (815)
Q Consensus 515 YdyDSd~EWeee 526 (815)
+.+..|.+|+++
T Consensus 107 ~~~~~d~~~~e~ 118 (149)
T PF03066_consen 107 VAMEEDEESEEE 118 (149)
T ss_dssp EE----------
T ss_pred cccccccccccc
Confidence 345566667653
No 105
>PRK12705 hypothetical protein; Provisional
Probab=34.13 E-value=9.2e+02 Score=29.17 Aligned_cols=10 Identities=10% Similarity=0.245 Sum_probs=4.2
Q ss_pred CcCcHHHHHH
Q 003501 693 SESDLPAIVS 702 (815)
Q Consensus 693 pd~dLp~Lv~ 702 (815)
.|.+...|.+
T Consensus 468 ~D~~~~~la~ 477 (508)
T PRK12705 468 SDAQATLLAR 477 (508)
T ss_pred ChHHHHHHHH
Confidence 4444444443
No 106
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=33.87 E-value=1.1e+02 Score=38.21 Aligned_cols=55 Identities=31% Similarity=0.456 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhcccCCccc
Q 003501 287 RREKEEADIRKQIRKQQEEADKEQRHREKEEAEMKKKLA----LQKQASMMERFLKRSKILTS 345 (815)
Q Consensus 287 ~~ekee~e~~k~~~k~~eeaekeqkr~ekeea~~k~~~~----~~kqa~~m~rFfkk~k~~~~ 345 (815)
+-|+.+++.+|.++| | +-|+.+||.|+.|.++|.. +-+|-.+...|..++.+.+.
T Consensus 418 k~er~~rd~rKK~Ek---E-amer~KrEeEerEskRQarklnfLltQTELySHFi~rK~d~n~ 476 (1185)
T KOG0388|consen 418 KNERNMRDLRKKAEK---E-AMERAKREEEERESKRQARKLNFLLTQTELYSHFIGRKNDCNL 476 (1185)
T ss_pred hhhHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccCCc
Confidence 335554444443333 2 2344446666666666654 34677788889988877664
No 107
>PF06886 TPX2: Targeting protein for Xklp2 (TPX2); InterPro: IPR009675 This family represents a conserved region approximately 60 residues long within the eukaryotic targeting protein for Xklp2 (TPX2). Xklp2 is a kinesin-like protein localised on centrosomes throughout the cell cycle and on spindle pole microtubules during metaphase. In Xenopus, it has been shown that Xklp2 protein is required for centrosome separation and maintenance of spindle bi-polarity []. TPX2 is a microtubule-associated protein that mediates the binding of the C-terminal domain of Xklp2 to microtubules. It is phosphorylated during mitosis in a microtubule-dependent way [].
Probab=33.20 E-value=2.3e+02 Score=24.36 Aligned_cols=11 Identities=45% Similarity=0.845 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 003501 311 RHREKEEAEMK 321 (815)
Q Consensus 311 kr~ekeea~~k 321 (815)
++++.++++.+
T Consensus 34 ~~~e~ee~eik 44 (57)
T PF06886_consen 34 KQKEEEEEEIK 44 (57)
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 108
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=33.00 E-value=6.7e+02 Score=27.21 Aligned_cols=14 Identities=14% Similarity=0.328 Sum_probs=8.8
Q ss_pred HHHHHHHHhhcccC
Q 003501 328 KQASMMERFLKRSK 341 (815)
Q Consensus 328 kqa~~m~rFfkk~k 341 (815)
.+..+++.|+.+-.
T Consensus 145 ~~~~lid~~i~~l~ 158 (250)
T PRK14474 145 LEQQIVGIFIARLE 158 (250)
T ss_pred HHHHHHHHHHHHhc
Confidence 35567777776653
No 109
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=32.65 E-value=6.1e+02 Score=26.68 Aligned_cols=52 Identities=27% Similarity=0.258 Sum_probs=30.9
Q ss_pred HHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003501 252 VEKEKKRMDCEQQKEKLHSERELKRLQEEAERDERRREKEEADIRKQIRKQQ 303 (815)
Q Consensus 252 ~eke~~~~~kE~~~e~~~~ek~~k~~e~~~~k~ek~~ekee~e~~k~~~k~~ 303 (815)
++.+.+++..+...+.++...++++..+++.....++-..++++.+|+-...
T Consensus 15 a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~ 66 (194)
T COG1390 15 AEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISS 66 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555565556666666666666666666666666666655544
No 110
>PF02270 TFIIF_beta: Transcription initiation factor IIF, beta subunit; InterPro: IPR003196 Accurate transcription in vivo requires at least six general transcription initiation factors, in addition to RNA polymerase II. Transcription initiation factor IIF (TFIIF) is a tetramer of two beta subunits associate with two alpha subunits which interacts directly with RNA polymerase II. The beta subunit of TFIIF is required for recruitment of RNA polymerase II onto the promoter. ; GO: 0005524 ATP binding, 0006367 transcription initiation from RNA polymerase II promoter, 0005674 transcription factor TFIIF complex; PDB: 1F3U_C 2BBY_A 1BBY_A.
Probab=32.39 E-value=49 Score=36.13 Aligned_cols=57 Identities=21% Similarity=0.400 Sum_probs=30.7
Q ss_pred CCcCc-HHHHHHHHhcCCC-cHHHHHHHHHHhCCCCcHHHHHHHHHHhhhccC---CCCceEEcHHH
Q 003501 692 ISESD-LPAIVSVIQSCST-NMNKILEALQQKFPSISRAQLRNKVREISDFNF---AENRWQVKREI 753 (815)
Q Consensus 692 Ipd~d-Lp~Lv~~Ihgs~~-Si~~LVE~lqk~fP~vSKa~IKnkIkEiA~r~~---~~krW~VK~Ev 753 (815)
++.++ +..||........ ++..|++..++ +-+-||..+.+||++.+ -.+.|.+|+|.
T Consensus 212 ~~~~eL~d~lF~~Fe~~~ywslK~L~~~t~Q-----P~~yLKeiL~eIa~~~k~g~~~~~w~LKpey 273 (275)
T PF02270_consen 212 MDKNELLDLLFKLFEKHQYWSLKDLRQRTQQ-----PEAYLKEILEEIAVLNKRGPHKNMWELKPEY 273 (275)
T ss_dssp HHHHHHHHHHHHHHHH-S-B-HHHHHHH--S------HHHHHHHHHHH--EE--TT---EE----SS
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHCC-----CHHHHHHHHHHHHHHhccCCcCCcEecchHH
Confidence 45444 4555566666665 89998888764 66899999999999964 45899999974
No 111
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=32.22 E-value=1.1e+03 Score=29.65 Aligned_cols=79 Identities=19% Similarity=0.237 Sum_probs=50.6
Q ss_pred CcHHHHHHHHHHHhcccCccccCccHHHHHH---HHHHHHhhhhcCCCCCCC-Ccc------------cCcCCCceEEee
Q 003501 83 LPLTKLVEEIHVKLKENGSEKLGVGLAAVKS---AVLFVGQRVMYGVSNADT-DIL------------EDDAEASLWCWE 146 (815)
Q Consensus 83 lpLs~L~~~i~~~L~~~~~~~~~l~~a~V~s---~I~~va~R~nYG~~~~~~-d~L------------ed~~~~~lWrWE 146 (815)
+-++..|...+..|.. +.+.|+. -|+.+.+|.+|++..++. .+| +...+
T Consensus 404 k~v~eav~S~q~~L~s--------~ma~ve~a~aRL~sL~~RlSyAvrrv~tiqGL~Ark~Alaqlrqe~~~~------- 468 (739)
T PF07111_consen 404 KLVSEAVSSSQQWLES--------QMAKVEQALARLPSLSNRLSYAVRRVHTIQGLMARKLALAQLRQEQCPP------- 468 (739)
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhHHHHHHhcccchhHHHHHHHHHHHHHHhccCCC-------
Confidence 3344444444444444 4566665 688889999999988761 111 11111
Q ss_pred eCCCcccch---hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003501 147 TRDVKLLPK---SVRGSLRIRRTFRKKIHERITAVSAMI 182 (815)
Q Consensus 147 ~~D~k~LP~---~~r~~~~~Rr~~R~ki~~r~~Av~~~L 182 (815)
+|+ ++...|.+=|.+|+++-..++--+..|
T Consensus 469 ------~pp~~~dL~~ELqqLReERdRl~aeLqlSa~li 501 (739)
T PF07111_consen 469 ------SPPSVTDLSLELQQLREERDRLDAELQLSARLI 501 (739)
T ss_pred ------CCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 444 678999999999999999988433333
No 112
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=32.07 E-value=5.3e+02 Score=26.86 Aligned_cols=16 Identities=19% Similarity=0.276 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHhh
Q 003501 322 KKLALQKQASMMERFL 337 (815)
Q Consensus 322 ~~~~~~kqa~~m~rFf 337 (815)
++.-...+..+++.|.
T Consensus 73 r~~ll~~k~~i~~~~~ 88 (198)
T PRK01558 73 RDLLISFEKSIKSLFK 88 (198)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333445566666663
No 113
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.45 E-value=35 Score=39.51 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 003501 159 GSLRIRRTFRKKIHERITAVSAMITALQKSE 189 (815)
Q Consensus 159 ~~~~~Rr~~R~ki~~r~~Av~~~L~~l~~~~ 189 (815)
..+..+-.||++|...+-++..-|+-|-+.=
T Consensus 13 ~~~~~ete~~~~v~~dye~~~erl~~~~kkL 43 (514)
T KOG3130|consen 13 ARLEVETECRKKVDNDYEALRERLSTLPKKL 43 (514)
T ss_pred HHhHHHHHHHHHHhhhHHHHHHHHHHhhhhc
Confidence 3455556688888888888866666555433
No 114
>KOG2341 consensus TATA box binding protein (TBP)-associated factor, RNA polymerase II [Transcription]
Probab=31.44 E-value=2.1e+02 Score=34.82 Aligned_cols=21 Identities=24% Similarity=0.135 Sum_probs=11.1
Q ss_pred hccCCcHHHHHHHH-HHHhccc
Q 003501 79 EESELPLTKLVEEI-HVKLKEN 99 (815)
Q Consensus 79 eeS~lpLs~L~~~i-~~~L~~~ 99 (815)
+||.-+|..|.++. |.+|.||
T Consensus 165 ~~~~~~~q~~~k~~~q~~~~Pf 186 (563)
T KOG2341|consen 165 EEFTRTLQGLLKSPPQPHLVPF 186 (563)
T ss_pred ccccccchhccCCCcccccccc
Confidence 45555555555554 4455553
No 115
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=30.91 E-value=85 Score=36.80 Aligned_cols=20 Identities=10% Similarity=-0.029 Sum_probs=13.4
Q ss_pred cceEEeecCCCCCCceeeec
Q 003501 476 WKQLLQFDKSHRPAFYGIWP 495 (815)
Q Consensus 476 ~~K~l~F~en~RPpy~GT~~ 495 (815)
.+++..|.-+.+||-.||-.
T Consensus 421 tr~~s~f~~~f~wpgqg~~~ 440 (506)
T KOG2507|consen 421 TRRVSSFANPFSWPGQGTAN 440 (506)
T ss_pred HHHHHHHhccCCCCCCCccc
Confidence 45666777777777777643
No 116
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=30.88 E-value=9.4e+02 Score=28.30 Aligned_cols=14 Identities=21% Similarity=0.470 Sum_probs=6.4
Q ss_pred cHHHHHHHHHHhCC
Q 003501 710 NMNKILEALQQKFP 723 (815)
Q Consensus 710 Si~~LVE~lqk~fP 723 (815)
|+.+=++.++..+|
T Consensus 431 Sv~~rL~~l~~~l~ 444 (445)
T PRK13428 431 TLSSRLAAAEAQLP 444 (445)
T ss_pred hHHHHHHHHHhhCC
Confidence 34444444455444
No 117
>PF10835 DUF2573: Protein of unknown function (DUF2573); InterPro: IPR020393 This entry contains proteins with no known function.
Probab=30.27 E-value=67 Score=29.51 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccCcccccCchhHHHHHHH
Q 003501 37 RRFNEEVKWLFGYYKEMITNQRLTIDLSECAGSLNGMVAALM 78 (815)
Q Consensus 37 ~~~~~e~~~l~~~~re~~~~~~~~~~~~~~~~~~~~~Va~L~ 78 (815)
..|+.+++||.++|.|.| +|+-.+..+-.|-.++
T Consensus 2 ~~l~eq~dgLveKytELL--------~Ge~~~e~~EkVk~W~ 35 (82)
T PF10835_consen 2 EKLQEQFDGLVEKYTELL--------LGETSPEMKEKVKQWA 35 (82)
T ss_pred hHHHHHHHHHHHHHHHHH--------hcCCCHHHHHHHHHHH
Confidence 368999999999999999 4443456666666664
No 118
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=29.85 E-value=3.5e+02 Score=28.52 Aligned_cols=8 Identities=38% Similarity=0.808 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q 003501 308 KEQRHREK 315 (815)
Q Consensus 308 keqkr~ek 315 (815)
+|+||++|
T Consensus 111 EEEKRrqk 118 (190)
T PF06936_consen 111 EEEKRRQK 118 (190)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444444
No 119
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=29.46 E-value=7.9e+02 Score=26.99 Aligned_cols=12 Identities=25% Similarity=0.310 Sum_probs=5.2
Q ss_pred HHHHHHHHHHhh
Q 003501 43 VKWLFGYYKEMI 54 (815)
Q Consensus 43 ~~~l~~~~re~~ 54 (815)
++.=+.+|...|
T Consensus 45 ~~~A~~~Y~~~m 56 (297)
T PF02841_consen 45 VEKAVEHYEEQM 56 (297)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 120
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=29.00 E-value=1.3e+02 Score=36.11 Aligned_cols=19 Identities=16% Similarity=0.081 Sum_probs=9.9
Q ss_pred cHHHHHHHHHHH-HhhhhcC
Q 003501 107 GLAAVKSAVLFV-GQRVMYG 125 (815)
Q Consensus 107 ~~a~V~s~I~~v-a~R~nYG 125 (815)
+..++..=|-.| +.+..|-
T Consensus 272 NE~aLkkDIQ~llasW~~~L 291 (591)
T KOG2505|consen 272 NEQALKKDIQSLLASWKKYL 291 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 445555555443 4555554
No 121
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=28.46 E-value=1.3e+03 Score=29.13 Aligned_cols=9 Identities=22% Similarity=0.073 Sum_probs=4.4
Q ss_pred HHHHHHHHH
Q 003501 38 RFNEEVKWL 46 (815)
Q Consensus 38 ~~~~e~~~l 46 (815)
..=.||+.|
T Consensus 299 daVrELDNl 307 (948)
T KOG0577|consen 299 DAVRELDNL 307 (948)
T ss_pred HHHHHhhhh
Confidence 334455555
No 122
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=27.82 E-value=6.5e+02 Score=25.50 Aligned_cols=14 Identities=29% Similarity=0.719 Sum_probs=8.1
Q ss_pred HHHHHHHHHhhccc
Q 003501 327 QKQASMMERFLKRS 340 (815)
Q Consensus 327 ~kqa~~m~rFfkk~ 340 (815)
..+..+++.|++..
T Consensus 157 ~~~~~lI~~~i~~~ 170 (173)
T PRK13453 157 QDQKALVDKYLKEA 170 (173)
T ss_pred HHHHHHHHHHHHhh
Confidence 34556667776543
No 123
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=27.72 E-value=6.4e+02 Score=25.37 Aligned_cols=14 Identities=7% Similarity=0.152 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhhcc
Q 003501 326 LQKQASMMERFLKR 339 (815)
Q Consensus 326 ~~kqa~~m~rFfkk 339 (815)
...+..++..|++.
T Consensus 148 ~~~~~~lid~~i~~ 161 (167)
T PRK14475 148 GAKSDPLVDAAIGQ 161 (167)
T ss_pred HHHHHHHHHHHHHH
Confidence 34456677777743
No 124
>PF13892 DBINO: DNA-binding domain
Probab=26.36 E-value=5.8e+02 Score=25.85 Aligned_cols=18 Identities=17% Similarity=0.355 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhhcccCCc
Q 003501 326 LQKQASMMERFLKRSKIL 343 (815)
Q Consensus 326 ~~kqa~~m~rFfkk~k~~ 343 (815)
+-+|-.++..|......+
T Consensus 118 Ll~QTElfsHF~~~k~~~ 135 (139)
T PF13892_consen 118 LLTQTELFSHFMQNKAKT 135 (139)
T ss_pred HHHHHHHHHHHHcccccc
Confidence 557777888888776543
No 125
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=26.06 E-value=7e+02 Score=25.22 Aligned_cols=13 Identities=15% Similarity=0.286 Sum_probs=7.3
Q ss_pred HHHHHHHHHhhcc
Q 003501 327 QKQASMMERFLKR 339 (815)
Q Consensus 327 ~kqa~~m~rFfkk 339 (815)
..+..+++.|+.+
T Consensus 155 ~~~~~lid~~i~~ 167 (173)
T PRK13460 155 EDYKAFIETELAK 167 (173)
T ss_pred HHHHHHHHHHHHH
Confidence 3455566666644
No 126
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=25.36 E-value=9.2e+02 Score=27.13 Aligned_cols=14 Identities=43% Similarity=0.323 Sum_probs=6.1
Q ss_pred HHHHHHhHHHHHHH
Q 003501 242 IKQLEKNKREVEKE 255 (815)
Q Consensus 242 ~k~~ek~~k~~eke 255 (815)
-|-++..+.|..-|
T Consensus 139 gKtlEQAl~EV~EE 152 (291)
T PF06098_consen 139 GKTLEQALMEVMEE 152 (291)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444333
No 127
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=24.71 E-value=62 Score=37.01 Aligned_cols=19 Identities=21% Similarity=0.123 Sum_probs=11.3
Q ss_pred ChhhhhhccCCCC-CCCCcC
Q 003501 519 SDEEWEEEEPGES-LSDCEK 537 (815)
Q Consensus 519 Sd~EWeeee~GEd-l~d~e~ 537 (815)
+-..|.++++||. ++..|.
T Consensus 392 ~~~~~~d~~e~e~e~~~~e~ 411 (434)
T KOG3555|consen 392 DIAFLLDDLEGEEETSHSES 411 (434)
T ss_pred chhhcccccccccccccccc
Confidence 3388987766653 444443
No 128
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=24.35 E-value=8.5e+02 Score=25.63 Aligned_cols=7 Identities=0% Similarity=0.292 Sum_probs=2.9
Q ss_pred HHHHHHh
Q 003501 330 ASMMERF 336 (815)
Q Consensus 330 a~~m~rF 336 (815)
..+|.+-
T Consensus 177 ~kiL~k~ 183 (205)
T PRK06231 177 EELIKKK 183 (205)
T ss_pred HHHHHhh
Confidence 3344443
No 129
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=23.56 E-value=7.7e+02 Score=24.89 Aligned_cols=12 Identities=17% Similarity=0.470 Sum_probs=6.8
Q ss_pred HHHHHHHHhhcc
Q 003501 328 KQASMMERFLKR 339 (815)
Q Consensus 328 kqa~~m~rFfkk 339 (815)
.+..+++.|++.
T Consensus 158 ~~~~li~~~i~~ 169 (175)
T PRK14472 158 KQKKVVDSMIQD 169 (175)
T ss_pred HHHHHHHHHHHH
Confidence 345566666654
No 130
>PF06658 DUF1168: Protein of unknown function (DUF1168); InterPro: IPR009548 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=23.27 E-value=5.6e+02 Score=25.95 Aligned_cols=59 Identities=12% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003501 232 KDAKREEKILIKQLEKNKREVEKEKKRMDCEQQKEKLHSERELKRLQEEAERDERRREK 290 (815)
Q Consensus 232 k~a~~~e~~~~k~~ek~~k~~eke~~~~~kE~~~e~~~~ek~~k~~e~~~~k~ek~~ek 290 (815)
...-+.|-++|+.++.+.++.....+=+.+-..+.....+|.+|+-.++..+.++.+.+
T Consensus 42 R~~RRrE~~Rl~~me~~~~~e~~~~eF~~kree~~~~~eekTaKkR~KR~KkK~kk~~~ 100 (142)
T PF06658_consen 42 RASRRREYERLEYMEEEAKKEKEDEEFQRKREERKKEAEEKTAKKRAKRQKKKQKKKKK 100 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 131
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=23.04 E-value=36 Score=39.11 Aligned_cols=18 Identities=39% Similarity=0.839 Sum_probs=11.8
Q ss_pred CCCCc--hhhhhhhc-chhhh
Q 003501 384 DEINI--DDIRRSHL-SSWHR 401 (815)
Q Consensus 384 ~~~~l--e~l~r~~~-~~w~~ 401 (815)
|++.+ ++..|.|- +.|++
T Consensus 9 C~v~F~~ad~Qr~HyKSdWHR 29 (390)
T KOG2785|consen 9 CNVEFDDADEQRAHYKSDWHR 29 (390)
T ss_pred eeeeeccHHHHHHHhhhhHHH
Confidence 44444 66789987 46876
No 132
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=22.70 E-value=64 Score=39.96 Aligned_cols=10 Identities=40% Similarity=0.541 Sum_probs=5.0
Q ss_pred cHHHHHHHHh
Q 003501 696 DLPAIVSVIQ 705 (815)
Q Consensus 696 dLp~Lv~~Ih 705 (815)
.|.+++..||
T Consensus 482 alk~~i~eiq 491 (822)
T KOG2141|consen 482 ALKDIITEIQ 491 (822)
T ss_pred HHHHHHHHHH
Confidence 3455555555
No 133
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=22.67 E-value=7.7e+02 Score=24.54 Aligned_cols=14 Identities=29% Similarity=0.496 Sum_probs=8.5
Q ss_pred HHHHHHHHHhhccc
Q 003501 327 QKQASMMERFLKRS 340 (815)
Q Consensus 327 ~kqa~~m~rFfkk~ 340 (815)
..+..+++.|+.+-
T Consensus 148 ~~~~~lid~~i~~~ 161 (164)
T PRK14471 148 EKQHKLVEKMLGDV 161 (164)
T ss_pred hHHHHHHHHHHHhc
Confidence 34566777777543
No 134
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=22.62 E-value=1.3e+02 Score=23.55 Aligned_cols=26 Identities=15% Similarity=0.415 Sum_probs=22.0
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHh
Q 003501 712 NKILEALQQKFPSISRAQLRNKVREI 737 (815)
Q Consensus 712 ~~LVE~lqk~fP~vSKa~IKnkIkEi 737 (815)
...++.|+..||+++...|+..+...
T Consensus 3 ~~~v~~L~~mFP~l~~~~I~~~L~~~ 28 (43)
T smart00546 3 DEALHDLKDMFPNLDEEVIKAVLEAN 28 (43)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHc
Confidence 34688899999999999999888753
No 135
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=22.46 E-value=7.7e+02 Score=24.43 Aligned_cols=13 Identities=8% Similarity=0.529 Sum_probs=7.0
Q ss_pred HHHHHHHHHhhcc
Q 003501 327 QKQASMMERFLKR 339 (815)
Q Consensus 327 ~kqa~~m~rFfkk 339 (815)
..+..+++.|+.+
T Consensus 144 ~~~~~li~~~i~~ 156 (159)
T PRK13461 144 SEHRRLIKDFISK 156 (159)
T ss_pred HHHHHHHHHHHhH
Confidence 3445566666543
No 136
>KOG3223 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.31 E-value=4.7e+02 Score=27.93 Aligned_cols=8 Identities=25% Similarity=0.742 Sum_probs=5.3
Q ss_pred CCCCCCCC
Q 003501 502 GPRHPLMK 509 (815)
Q Consensus 502 ~~r~Pf~k 509 (815)
.|.|||.+
T Consensus 206 sPDNP~Nq 213 (221)
T KOG3223|consen 206 SPDNPFNQ 213 (221)
T ss_pred CCCChhhH
Confidence 37777764
No 137
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=22.21 E-value=2.3e+02 Score=33.41 Aligned_cols=9 Identities=33% Similarity=0.279 Sum_probs=3.9
Q ss_pred HHHHHHHhH
Q 003501 241 LIKQLEKNK 249 (815)
Q Consensus 241 ~~k~~ek~~ 249 (815)
+...+.|++
T Consensus 199 rl~~ltk~l 207 (506)
T KOG2507|consen 199 RLCDLTKNL 207 (506)
T ss_pred HHHHHHhhc
Confidence 344444444
No 138
>KOG4709 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.96 E-value=2.8e+02 Score=29.56 Aligned_cols=9 Identities=22% Similarity=0.309 Sum_probs=4.0
Q ss_pred HHHHHHHHh
Q 003501 328 KQASMMERF 336 (815)
Q Consensus 328 kqa~~m~rF 336 (815)
..+.+|..|
T Consensus 80 ~LeErl~af 88 (217)
T KOG4709|consen 80 MLEERLEAF 88 (217)
T ss_pred HHHHHHHHh
Confidence 334445544
No 139
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=21.80 E-value=7.4e+02 Score=30.83 Aligned_cols=14 Identities=21% Similarity=0.200 Sum_probs=6.4
Q ss_pred CCcHHHHHHHHHHh
Q 003501 724 SISRAQLRNKVREI 737 (815)
Q Consensus 724 ~vSKa~IKnkIkEi 737 (815)
+.+.++|.+-|..|
T Consensus 627 h~~~q~iL~dl~~i 640 (668)
T KOG2253|consen 627 HSSPQQILDDLAMI 640 (668)
T ss_pred cCCHHHHHHHHHHH
Confidence 33445554444444
No 140
>PF11081 DUF2890: Protein of unknown function (DUF2890); InterPro: IPR021304 This entry contains the 33kDa and 22kDa phosphoproteins from vertebrate adenoviruses.
Probab=21.67 E-value=38 Score=35.47 Aligned_cols=14 Identities=43% Similarity=0.961 Sum_probs=10.0
Q ss_pred CChhhhhhccCCCCCC
Q 003501 518 DSDEEWEEEEPGESLS 533 (815)
Q Consensus 518 DSd~EWeeee~GEdl~ 533 (815)
|.+++|+ .+||.+.
T Consensus 19 ~~eE~w~--SqaE~l~ 32 (187)
T PF11081_consen 19 DEEEEWD--SQAEELG 32 (187)
T ss_pred chhhhhh--hcccccC
Confidence 8888897 3566665
No 141
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=21.16 E-value=1.2e+03 Score=26.17 Aligned_cols=8 Identities=50% Similarity=0.941 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 003501 316 EEAEMKKK 323 (815)
Q Consensus 316 eea~~k~~ 323 (815)
++++++++
T Consensus 166 ~eaeL~~e 173 (276)
T PF12037_consen 166 EEAELRRE 173 (276)
T ss_pred HHHHHHHH
Confidence 34444433
No 142
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=21.00 E-value=8.9e+02 Score=24.66 Aligned_cols=78 Identities=19% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003501 241 LIKQLEKNKREVEKEKKRMDCEQQKEKLHSERELKRLQEEAERDERRREKEEADIRKQIRKQQEEADKEQRHREKEEA 318 (815)
Q Consensus 241 ~~k~~ek~~k~~eke~~~~~kE~~~e~~~~ek~~k~~e~~~~k~ek~~ekee~e~~k~~~k~~eeaekeqkr~ekeea 318 (815)
+-+-.++-+.++++|-++.-.+..++..+.-.+++..-+.....-..+.+.+++..+++.......+..++.....+.
T Consensus 4 l~~i~~~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~e 81 (198)
T PRK03963 4 AELIIQEINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEE 81 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 143
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=20.57 E-value=5.5e+02 Score=29.55 Aligned_cols=11 Identities=36% Similarity=0.561 Sum_probs=4.9
Q ss_pred HHHHHHHHhhc
Q 003501 328 KQASMMERFLK 338 (815)
Q Consensus 328 kqa~~m~rFfk 338 (815)
++..+..+|-.
T Consensus 163 r~~m~~~~~~~ 173 (361)
T KOG3634|consen 163 RQEMMAGRFAE 173 (361)
T ss_pred HHHHHhcCcCc
Confidence 44444444543
No 144
>PF04747 DUF612: Protein of unknown function, DUF612; InterPro: IPR006836 This family includes several uncharacterised proteins from Caenorhabditis elegans.
Probab=20.04 E-value=1.2e+03 Score=27.46 Aligned_cols=14 Identities=7% Similarity=0.121 Sum_probs=8.3
Q ss_pred cHHHHHHHHhcCCC
Q 003501 696 DLPAIVSVIQSCST 709 (815)
Q Consensus 696 dLp~Lv~~Ihgs~~ 709 (815)
|-.+|++||.....
T Consensus 453 DsMDFLDFVTaKpe 466 (510)
T PF04747_consen 453 DSMDFLDFVTAKPE 466 (510)
T ss_pred ccchHHhhccCCcc
Confidence 35666677665543
Done!