Query 003501
Match_columns 815
No_of_seqs 186 out of 236
Neff 4.5
Searched_HMMs 29240
Date Tue Mar 26 18:34:55 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003501.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1549-1552//hhsearch_pdb/003501hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i1j_A Moesin; FERM, coiled-co 1.0 1 1 21.8 4.4 20 107-126 184-203 (575)
2 1bby_A RAP30; average structur 1.0 1 1 21.8 3.2 52 697-753 10-65 (69)
3 2ca6_A RAN GTPase-activating p 1.0 1 1 21.5 0.4 10 476-485 304-313 (386)
4 1ij5_A Plasmodial specific LAV 1.0 1 1 20.2 8.1 86 244-336 9-99 (323)
5 4fp9_B Mterf domain-containing 1.0 1 1 15.6 0.0 19 71-89 25-43 (335)
6 2ayu_A Nucleosome assembly pro 1.0 1 1 15.2 0.0 25 247-271 97-121 (417)
7 1q1v_A DEK protein; winged-hel 1.0 1 1 13.8 6.9 57 681-737 1-65 (70)
8 3p87_G Ribonuclease H2 subunit 1.0 1 1 13.7 0.8 13 762-776 1-13 (23)
9 1otr_A Protein CUE2; protein-p 1.0 1 1 13.5 3.2 21 715-735 8-28 (49)
10 2p5k_A Arginine repressor; DNA 1.0 1 1 13.2 5.9 41 697-737 7-48 (64)
No 1
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=1.00 E-value=1 Score=21.84 Aligned_cols=20 Identities=25% Similarity=0.255 Sum_probs=13.3
Q ss_pred CHHHHHHHHHHHHHHHHCCC
Q ss_conf 19999999998886642299
Q 003501 107 GLAAVKSAVLFVGQRVMYGV 126 (815)
Q Consensus 107 ~~a~V~s~I~~va~R~nYG~ 126 (815)
+..+...-+..+-+.-+||.
T Consensus 184 ~~eA~~~yL~~a~~lp~YG~ 203 (575)
T 2i1j_A 184 REDAMMEYLKIAQDLEMYGV 203 (575)
T ss_dssp HHHHHHHHHHHHTTSTTTTC
T ss_pred HHHHHHHHHHHHHHCCCCCC
T ss_conf 89999999999984355698
No 2
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=1.00 E-value=1 Score=21.81 Aligned_cols=52 Identities=23% Similarity=0.418 Sum_probs=39.4
Q ss_pred HHHHHHHHHCCCC-CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC---CCCCEEECHHH
Q ss_conf 7899999840887-579999999986999839999999998531037---89861774877
Q 003501 697 LPAIVSVIQSCST-NMNKILEALQQKFPSISRAQLRNKVREISDFNF---AENRWQVKREI 753 (815)
Q Consensus 697 Lp~Lv~~Ihgs~~-Si~~LVE~lqk~fP~vSK~~IKnkIkEIA~r~~---~~krW~VK~Ev 753 (815)
+..|+........ ++..|+...++ +.+-||..+++||++.. -.+.|.+|+|.
T Consensus 10 ~d~lF~~Fek~~yw~lK~L~~~t~Q-----P~~yLKeiL~~Ia~~~k~g~~~~~weLKpEy 65 (69)
T 1bby_A 10 LDMLFSAFEKHQYYNLKDLVDITKQ-----PVVYLKEILKEIGVQNVKGIHKNTWELKPEY 65 (69)
T ss_dssp HHHHHHHHHHCSCBCHHHHHHHCCS-----CHHHHHHHHHHHCCCBCCTTCCCBBCCCCSS
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCC-----CHHHHHHHHHHHHHHHCCCCCCCEEECCHHH
T ss_conf 9999999863678749999999769-----4899999999999997379877802175987
No 3
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=1.00 E-value=1 Score=21.48 Aligned_cols=10 Identities=10% Similarity=0.096 Sum_probs=4.7
Q ss_pred CCEEEEECCC
Q ss_conf 5167864379
Q 003501 476 WKQLLQFDKS 485 (815)
Q Consensus 476 ~~K~l~F~en 485 (815)
..++|.+..|
T Consensus 304 ~L~~L~l~~N 313 (386)
T 2ca6_A 304 DLLFLELNGN 313 (386)
T ss_dssp TCCEEECTTS
T ss_pred CCEEEECCCC
T ss_conf 7559982378
No 4
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Probab=1.00 E-value=1 Score=20.24 Aligned_cols=86 Identities=20% Similarity=0.261 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999678999999764299999-----99865999999999999999999889999999999989999999988899999
Q 003501 244 QLEKNKREVEKEKKRMDCEQQK-----EKLHSERELKRLQEEAERDERRREKEEADIRKQIRKQQEEADKEQRHREKEEA 318 (815)
Q Consensus 244 ~~ek~~k~~eke~~~~~kE~~~-----e~~~~ek~~k~~e~~~~k~ek~~ekee~e~~k~~~k~~~e~~keqkr~ekeea 318 (815)
|.+-+-|++.+|.+++.|+++. +..|.-.++.- ..++-+++++.++. +++.+.+-.++|..+++..++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~~~~~~r~~~~~~~a 81 (323)
T 1ij5_A 9 QREANVKKVHENLEELQKKLDHTSFAHKEDRDRLEAQI--AQKEQEQKAKLAEY-----DQKVQNEFDARERAEREREAA 81 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCC-----CCHHHHH--HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-----HHHHCCHHHHHHHHHHHHHHH
T ss_conf 88999988888899999988877776477788799999--99888999888889-----998707214468988878865
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999974
Q 003501 319 EMKKKLALQKQASMMERF 336 (815)
Q Consensus 319 ~~k~q~~~~kqa~~m~rF 336 (815)
.--.....+.-.+++.++
T Consensus 82 ~g~~~~e~q~~~~vl~~l 99 (323)
T 1ij5_A 82 RGDAAAEKQRLASLLKDL 99 (323)
T ss_dssp TSCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHH
T ss_conf 278787640169999999
No 5
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=15.57 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=7.9
Q ss_pred HHHHHHHHHCCCCCHHHHH
Q ss_conf 4799998730489679999
Q 003501 71 NGMVAALMEESELPLTKLV 89 (815)
Q Consensus 71 ~~~Va~L~eeS~l~Ls~L~ 89 (815)
..+|.+|.++..-|...+.
T Consensus 25 ~~~v~~l~~~~~~~~~~~~ 43 (335)
T 4fp9_B 25 RNLVQCLLEKQGTPVVQGS 43 (335)
T ss_dssp ------------CHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCC
T ss_conf 7889999974787644353
No 6
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=1.00 E-value=1 Score=15.15 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9678999999764299999998659
Q 003501 247 KNKREVEKEKKRMDCEQQKEKLHSE 271 (815)
Q Consensus 247 k~~k~~eke~~~~~kE~~~e~~~~e 271 (815)
..++..|++...++.+..++-...|
T Consensus 97 ~aLk~lQ~e~~~le~ef~~ev~eLE 121 (417)
T 2ayu_A 97 LSLKTLQSELFEVEKEFQVEMFELE 121 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999
No 7
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=1.00 E-value=1 Score=13.75 Aligned_cols=57 Identities=12% Similarity=0.253 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHCCCC----CHHHHHHHHHHHCCCCC----HHHHHHHHHHH
Q ss_conf 46899998998996767899999840887----57999999998699983----99999999985
Q 003501 681 CLSNGKGSTTLISESDLPAIVSVIQSCST----NMNKILEALQQKFPSIS----RAQLRNKVREI 737 (815)
Q Consensus 681 ~~S~~Kk~kt~Ipd~dLp~Lv~~Ihgs~~----Si~~LVE~lqk~fP~vS----K~~IKnkIkEI 737 (815)
..+-.|+.+...++..+...|+.|..... +++.+-..+...||++. |+.|+..|.++
T Consensus 1 ~~~l~~k~~~~Psd~ei~~~I~~IL~~aDL~tvT~K~VR~~Le~~~pg~dLs~kK~~I~~~I~~~ 65 (70)
T 1q1v_A 1 DEPLIKKLKKPPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLTERKDFIKTTVKEL 65 (70)
T ss_dssp CCSCCCCCCCCCCHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHCSSSCCSHHHHHHHHHHHHH
T ss_pred CCCHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 92054414689599999999999998488888709999999998834999767799999999998
No 8
>3p87_G Ribonuclease H2 subunit B; DNA binding, DNA replication, DNA repair, sliding clamp, PCN interacting peptide (PIP) motif, PIP-box motif, DNA clamp; 2.99A {Homo sapiens}
Probab=1.00 E-value=1 Score=13.72 Aligned_cols=13 Identities=54% Similarity=0.802 Sum_probs=0.0
Q ss_pred CCCCCCCCCHHHHHC
Q ss_conf 878888540334510
Q 003501 762 DKNGGRAKGIATFFS 776 (815)
Q Consensus 762 e~~~~~~~~i~~~~s 776 (815)
+|. +||+|+.||+
T Consensus 1 DKs--gMKSI~sFF~ 13 (23)
T 3p87_G 1 DKS--GMKSIDTFFG 13 (26)
T ss_pred CCC--CCHHHHHHHC
T ss_conf 975--5420787746
No 9
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=1.00 E-value=1 Score=13.55 Aligned_cols=21 Identities=33% Similarity=0.581 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCCHHHHHHHHH
Q ss_conf 999998699983999999999
Q 003501 715 LEALQQKFPSISRAQLRNKVR 735 (815)
Q Consensus 715 VE~lqk~fP~vSK~~IKnkIk 735 (815)
+..|+..||.+++..|++++.
T Consensus 8 v~~L~EMFP~~~~~~ik~~L~ 28 (49)
T 1otr_A 8 LSILMDMFPAISKSKLQVHLL 28 (49)
T ss_dssp HHHHHHHCSSSCHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHH
T ss_conf 999998789998999999999
No 10
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=1.00 E-value=1 Score=13.21 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCC-CHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 7899999840887-5799999999869998399999999985
Q 003501 697 LPAIVSVIQSCST-NMNKILEALQQKFPSISRAQLRNKVREI 737 (815)
Q Consensus 697 Lp~Lv~~Ihgs~~-Si~~LVE~lqk~fP~vSK~~IKnkIkEI 737 (815)
...+..++..... +...|.+.|.+..|++|.++|.+.+++.
T Consensus 7 ~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l 48 (64)
T 2p5k_A 7 HIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKEL 48 (64)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHC
T ss_conf 999999997689999999999999809986899999879986
Done!