Query 003501
Match_columns 815
No_of_seqs 186 out of 236
Neff 4.5
Searched_HMMs 13730
Date Tue Mar 26 18:40:05 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003501.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1549-1552//hhsearch_scop/003501hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bbya_ a.4.5.15 (A:) DNA-bind 65.3 2.3 0.00017 17.3 2.9 52 697-753 10-65 (69)
2 d2doaa1 a.4.5.81 (A:8-98) RNA 15.6 19 0.0014 11.0 4.5 60 700-759 10-70 (91)
3 d1dpua_ a.4.5.16 (A:) C-termin 13.8 21 0.0015 10.7 3.2 43 698-740 9-51 (69)
4 d1lgbc_ c.94.1.2 (C:) Lactofer 8.5 32 0.0023 9.4 -0.2 12 407-418 20-31 (159)
5 d1gv8a_ c.94.1.2 (A:) Ovotrans 8.1 30 0.0022 9.6 -0.5 12 407-418 20-31 (159)
6 d1kxpd3 a.126.1.1 (D:405-473) 7.3 44 0.0032 8.5 4.0 36 705-740 7-44 (69)
7 d1x3zb1 a.189.1.1 (B:253-309) 7.1 45 0.0033 8.4 1.1 38 693-730 6-43 (57)
8 d1e0na_ b.72.1.1 (A:) Hypothet 5.1 69 0.005 7.1 0.1 16 481-496 5-20 (27)
9 d2arha1 d.108.1.9 (A:1-196) Hy 4.9 72 0.0052 7.0 0.4 8 487-494 56-63 (196)
10 d2joza1 b.60.1.1 (A:2-127) Hyp 4.6 78 0.0057 6.8 1.2 10 485-494 11-20 (126)
No 1
>d2bbya_ a.4.5.15 (A:) DNA-binding domain from rap30 {Human (Homo sapiens) [TaxId: 9606]}
Probab=65.35 E-value=2.3 Score=17.30 Aligned_cols=52 Identities=21% Similarity=0.388 Sum_probs=39.5
Q ss_pred HHHHHHHHHCCCC-CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC---CCCCEEECHHH
Q ss_conf 7899999840887-579999999986999839999999998531037---89861774877
Q 003501 697 LPAIVSVIQSCST-NMNKILEALQQKFPSISRAQLRNKVREISDFNF---AENRWQVKREI 753 (815)
Q Consensus 697 Lp~Lv~~Ihgs~~-Si~~LVE~lqk~fP~vSK~~IKnkIkEIA~r~~---~~krW~VK~Ev 753 (815)
+..|+........ |+..|++..+ =+.+-||..+++||++.. -.+.|.+|+|.
T Consensus 10 ~d~lF~~Fek~~ywsiK~L~~~t~-----QP~~yLKeiL~eIa~~~~~g~~~~~weLKpEY 65 (69)
T d2bbya_ 10 LDMLFSAFEKHQYYNLKDLVDITK-----QPVVYLKEILKEIGVQNVKGIHKNTWELKPEY 65 (69)
T ss_dssp HHHHHHHHHHCSCBCHHHHHHHCC-----SCHHHHHHHHHHHCCEECCTTCCCEECCCCSS
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHH-----CHHHHHHHHHHHHHHHHCCCCCCCCEECCHHH
T ss_conf 999999986467878999999981-----93999999999999997479767853378887
No 2
>d2doaa1 a.4.5.81 (A:8-98) RNA polymerase II elongation factor ELL {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.63 E-value=19 Score=10.99 Aligned_cols=60 Identities=7% Similarity=0.151 Sum_probs=38.1
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCCCCCCEEECHHHHHHCCC
Q ss_conf 99998408875799999999869998-3999999999853103789861774877987199
Q 003501 700 IVSVIQSCSTNMNKILEALQQKFPSI-SRAQLRNKVREISDFNFAENRWQVKREILIELGY 759 (815)
Q Consensus 700 Lv~~Ihgs~~Si~~LVE~lqk~fP~v-SK~~IKnkIkEIA~r~~~~krW~VK~EvL~~~gL 759 (815)
+|..+-=.+.+...|+.-+....-.. .+..+..-+.+||+++...+.|++|++..+.++.
T Consensus 10 iIH~La~~p~~~sEL~~~l~~d~~~~~d~~~l~~iL~~Va~~~~~~g~Y~LK~~~~~Evdp 70 (91)
T d2doaa1 10 VLHLLALRPYRKAELLLRLQKDGLTQADKDALDGLLQQVANMSAKDGTCTLQDCMYKDVQK 70 (91)
T ss_dssp HHHHHHHSCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHSSEECSSSCEEECCSSGGGGCCS
T ss_pred HHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHEECCCCCEEEEHHHHHHHCCC
T ss_conf 9999982889889999998862355104889999999984145788667427999967176
No 3
>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.78 E-value=21 Score=10.66 Aligned_cols=43 Identities=14% Similarity=0.327 Sum_probs=32.6
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf 8999998408875799999999869998399999999985310
Q 003501 698 PAIVSVIQSCSTNMNKILEALQQKFPSISRAQLRNKVREISDF 740 (815)
Q Consensus 698 p~Lv~~Ihgs~~Si~~LVE~lqk~fP~vSK~~IKnkIkEIA~r 740 (815)
..++.+|++|...-+.=+..++++|++++.+.|++.|.++..=
T Consensus 9 ~~V~~~i~s~~~~eGi~~~el~~~l~~~~~~~i~~aid~L~~e 51 (69)
T d1dpua_ 9 NQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNE 51 (69)
T ss_dssp HHHHHHHHHCCCTTTEEHHHHHHHSTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHC
T ss_conf 9999999838885683899999881699999999999999837
No 4
>d1lgbc_ c.94.1.2 (C:) Lactoferrin {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.51 E-value=32 Score=9.42 Aligned_cols=12 Identities=33% Similarity=0.595 Sum_probs=5.6
Q ss_pred HCCCCCCCCCCC
Q ss_conf 114322212226
Q 003501 407 RSNRNQHWGIRR 418 (815)
Q Consensus 407 r~~r~~~wg~r~ 418 (815)
|-.+.||-|..+
T Consensus 20 kGkksCHtG~~~ 31 (159)
T d1lgbc_ 20 QGLKSCHTGLRR 31 (159)
T ss_dssp TTCCEECCCTTC
T ss_pred CCCCCCCCCCCC
T ss_conf 898656688898
No 5
>d1gv8a_ c.94.1.2 (A:) Ovotransferrin {Duck (Anas platyrhynchos) [TaxId: 8839]}
Probab=8.12 E-value=30 Score=9.62 Aligned_cols=12 Identities=33% Similarity=0.551 Sum_probs=5.2
Q ss_pred HCCCCCCCCCCC
Q ss_conf 114322212226
Q 003501 407 RSNRNQHWGIRR 418 (815)
Q Consensus 407 r~~r~~~wg~r~ 418 (815)
|-.+.||-|..+
T Consensus 20 kGkksCHtG~g~ 31 (159)
T d1gv8a_ 20 RGKTSCHTGLGR 31 (159)
T ss_dssp TTCEEEESCTTC
T ss_pred CCCCCCCCCCCC
T ss_conf 798744689898
No 6
>d1kxpd3 a.126.1.1 (D:405-473) Vitamin D binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.26 E-value=44 Score=8.50 Aligned_cols=36 Identities=28% Similarity=0.407 Sum_probs=30.5
Q ss_pred HCCCCC--HHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf 408875--799999999869998399999999985310
Q 003501 705 QSCSTN--MNKILEALQQKFPSISRAQLRNKVREISDF 740 (815)
Q Consensus 705 hgs~~S--i~~LVE~lqk~fP~vSK~~IKnkIkEIA~r 740 (815)
+.++|+ +.+|.|-|..++|..|-..|+..|.-.++|
T Consensus 7 se~tFte~kkkL~e~lr~k~P~as~~~l~~mVekrsdf 44 (69)
T d1kxpd3 7 SENTFTEYKKKLAERLKAKLPDATPKELAKLVNKRSDF 44 (69)
T ss_dssp TTSCHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 12309999999999998528999989999999987279
No 7
>d1x3zb1 a.189.1.1 (B:253-309) Rad23 STI1 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.09 E-value=45 Score=8.41 Aligned_cols=38 Identities=16% Similarity=0.414 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHH
Q ss_conf 96767899999840887579999999986999839999
Q 003501 693 SESDLPAIVSVIQSCSTNMNKILEALQQKFPSISRAQL 730 (815)
Q Consensus 693 pd~dLp~Lv~~Ihgs~~Si~~LVE~lqk~fP~vSK~~I 730 (815)
+-+||..|-+.|.|++-.+.-|.|.+..++|++--...
T Consensus 6 t~edl~~lr~vvsg~peal~plle~ls~ryp~lre~im 43 (57)
T d1x3zb1 6 TVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIM 43 (57)
T ss_dssp CTTHHHHHHHHHHHCGGGHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 29999999978659957777899999876679999997
No 8
>d1e0na_ b.72.1.1 (A:) Hypothetical protein Yjq8 (Set2p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.07 E-value=69 Score=7.13 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=11.6
Q ss_pred EECCCCCCCCEEEECC
Q ss_conf 6437999981143108
Q 003501 481 QFDKSHRPAFYGIWPK 496 (815)
Q Consensus 481 ~F~en~RPpy~GT~~k 496 (815)
-.|||-||-||..-.+
T Consensus 5 iihengrpmyynaq~q 20 (27)
T d1e0na_ 5 IIHENGRPLYYNAEQK 20 (27)
T ss_dssp EEESSSSEEEEETTTT
T ss_pred EEECCCCEEEEEHHHH
T ss_conf 6622893626616554
No 9
>d2arha1 d.108.1.9 (A:1-196) Hypothetical protein Aq_1966 {Aquifex aeolicus [TaxId: 63363]}
Probab=4.93 E-value=72 Score=7.03 Aligned_cols=8 Identities=25% Similarity=1.007 Sum_probs=0.0
Q ss_pred CCCCEEEE
Q ss_conf 99811431
Q 003501 487 RPAFYGIW 494 (815)
Q Consensus 487 RPpy~GT~ 494 (815)
|||||+-|
T Consensus 56 R~pYY~PW 63 (196)
T d2arha1 56 RKPYWQPW 63 (196)
T ss_dssp BTTTBCCE
T ss_pred CCCCCCCH
T ss_conf 89776540
No 10
>d2joza1 b.60.1.1 (A:2-127) Hypothetical protein YxeF {Bacillus subtilis [TaxId: 1423]}
Probab=4.62 E-value=78 Score=6.79 Aligned_cols=10 Identities=40% Similarity=1.291 Sum_probs=0.0
Q ss_pred CCCCCCEEEE
Q ss_conf 9999811431
Q 003501 485 SHRPAFYGIW 494 (815)
Q Consensus 485 n~RPpy~GT~ 494 (815)
+.-|-|||||
T Consensus 11 ~e~pfyygtw 20 (126)
T d2joza1 11 EETPFYYGTW 20 (126)
T ss_dssp SCCCTTCEEE
T ss_pred CCCCCEEECC
T ss_conf 6898244123
Done!