Query 003502
Match_columns 815
No_of_seqs 368 out of 2040
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 00:39:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003502.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003502hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1002 Nucleotide excision re 100.0 6E-119 1E-123 902.3 44.6 623 100-815 163-791 (791)
2 KOG0387 Transcription-coupled 100.0 4.4E-94 9.6E-99 763.7 41.0 528 54-814 149-698 (923)
3 KOG0385 Chromatin remodeling c 100.0 5E-90 1.1E-94 728.5 36.8 458 114-797 159-623 (971)
4 KOG0389 SNF2 family DNA-depend 100.0 9.8E-84 2.1E-88 683.6 28.0 505 120-799 398-914 (941)
5 KOG0392 SNF2 family DNA-depend 100.0 2E-82 4.4E-87 698.3 34.7 510 108-815 962-1496(1549)
6 PLN03142 Probable chromatin-re 100.0 3.7E-81 7.9E-86 721.9 44.9 474 113-814 161-641 (1033)
7 KOG0384 Chromodomain-helicase 100.0 2.3E-81 5E-86 694.0 32.5 472 120-814 369-857 (1373)
8 KOG4439 RNA polymerase II tran 100.0 3.9E-80 8.6E-85 647.2 34.9 541 111-814 315-900 (901)
9 KOG0391 SNF2 family DNA-depend 100.0 5.6E-79 1.2E-83 662.8 33.0 569 111-814 605-1428(1958)
10 KOG0388 SNF2 family DNA-depend 100.0 4.6E-78 1E-82 629.0 33.3 538 110-797 556-1178(1185)
11 KOG0390 DNA repair protein, SN 100.0 7.2E-72 1.6E-76 613.7 41.2 497 115-814 232-748 (776)
12 KOG1015 Transcription regulato 100.0 3.3E-71 7.2E-76 592.7 32.7 587 109-814 656-1317(1567)
13 KOG0386 Chromatin remodeling c 100.0 1.4E-72 3.1E-77 612.5 19.2 474 120-813 393-877 (1157)
14 KOG1001 Helicase-like transcri 100.0 2.8E-67 6.1E-72 583.7 27.3 529 124-796 135-673 (674)
15 COG0553 HepA Superfamily II DN 100.0 2.6E-59 5.7E-64 570.0 39.5 505 116-814 333-864 (866)
16 KOG1000 Chromatin remodeling p 100.0 2.5E-57 5.4E-62 458.0 30.5 426 115-794 192-624 (689)
17 PRK04914 ATP-dependent helicas 100.0 4.5E-57 9.8E-62 521.0 32.4 469 117-812 148-644 (956)
18 KOG1016 Predicted DNA helicase 100.0 1.9E-54 4.2E-59 455.3 22.7 583 115-813 248-888 (1387)
19 KOG0298 DEAD box-containing he 100.0 7.5E-45 1.6E-49 405.9 20.7 299 144-537 377-690 (1394)
20 TIGR00603 rad25 DNA repair hel 100.0 7E-42 1.5E-46 381.5 36.2 355 119-781 253-615 (732)
21 PF00176 SNF2_N: SNF2 family N 100.0 2.1E-41 4.6E-46 359.1 19.4 289 125-538 1-299 (299)
22 KOG0383 Predicted helicase [Ge 100.0 1.1E-41 2.3E-46 372.5 7.4 378 120-727 294-696 (696)
23 PRK13766 Hef nuclease; Provisi 100.0 1.9E-35 4.1E-40 351.3 38.1 144 642-790 345-496 (773)
24 COG1111 MPH1 ERCC4-like helica 100.0 6E-35 1.3E-39 300.2 36.0 468 120-795 14-503 (542)
25 COG1061 SSL2 DNA or RNA helica 100.0 1.1E-30 2.5E-35 285.8 32.3 370 117-785 32-406 (442)
26 KOG1123 RNA polymerase II tran 100.0 1.5E-31 3.2E-36 271.6 21.3 393 80-780 261-660 (776)
27 PHA02558 uvsW UvsW helicase; P 100.0 2.8E-30 6.1E-35 288.9 31.6 125 645-772 329-454 (501)
28 KOG0354 DEAD-box like helicase 100.0 5.4E-26 1.2E-30 248.8 35.2 147 641-795 392-550 (746)
29 PTZ00110 helicase; Provisional 99.9 9.6E-26 2.1E-30 254.1 31.4 124 644-773 361-484 (545)
30 PRK11192 ATP-dependent RNA hel 99.9 1.5E-25 3.1E-30 249.0 29.5 106 659-766 242-347 (434)
31 PRK10590 ATP-dependent RNA hel 99.9 2.6E-25 5.7E-30 247.1 28.3 119 659-783 242-360 (456)
32 PRK11776 ATP-dependent RNA hel 99.9 5E-25 1.1E-29 246.2 28.6 121 645-773 229-349 (460)
33 PRK04837 ATP-dependent RNA hel 99.9 4.5E-25 9.7E-30 243.8 27.3 120 645-772 242-361 (423)
34 PRK04537 ATP-dependent RNA hel 99.9 8.3E-25 1.8E-29 247.2 29.1 120 645-772 244-363 (572)
35 TIGR00614 recQ_fam ATP-depende 99.9 4.9E-25 1.1E-29 245.6 26.6 105 661-767 225-329 (470)
36 PLN00206 DEAD-box ATP-dependen 99.9 1.7E-24 3.7E-29 243.4 30.6 107 663-773 368-475 (518)
37 PRK01297 ATP-dependent RNA hel 99.9 9.9E-25 2.2E-29 244.3 28.3 110 660-773 333-442 (475)
38 KOG0331 ATP-dependent RNA heli 99.9 9.7E-25 2.1E-29 232.0 24.4 119 643-764 323-441 (519)
39 PRK11634 ATP-dependent RNA hel 99.9 1.2E-23 2.6E-28 238.9 31.7 113 645-763 232-344 (629)
40 PTZ00424 helicase 45; Provisio 99.9 1.1E-23 2.4E-28 232.4 27.4 111 661-775 266-376 (401)
41 PRK11057 ATP-dependent DNA hel 99.9 9.5E-24 2.1E-28 241.4 27.5 101 661-763 235-335 (607)
42 PRK11448 hsdR type I restricti 99.9 1.3E-23 2.9E-28 249.6 29.4 113 655-770 691-815 (1123)
43 TIGR01389 recQ ATP-dependent D 99.9 1.1E-23 2.5E-28 241.9 26.8 102 662-765 224-325 (591)
44 TIGR00643 recG ATP-dependent D 99.9 4E-22 8.6E-27 229.1 33.1 100 663-764 449-559 (630)
45 KOG0330 ATP-dependent RNA heli 99.9 3.1E-23 6.7E-28 205.9 18.7 124 645-776 287-410 (476)
46 PLN03137 ATP-dependent DNA hel 99.9 1.5E-22 3.3E-27 232.2 25.8 104 662-767 680-783 (1195)
47 PRK10917 ATP-dependent DNA hel 99.9 6.5E-22 1.4E-26 228.7 31.0 105 662-770 471-586 (681)
48 TIGR00580 mfd transcription-re 99.9 1.1E-21 2.4E-26 229.2 29.5 107 662-772 660-769 (926)
49 TIGR03817 DECH_helic helicase/ 99.9 2.5E-21 5.4E-26 224.6 27.5 116 662-781 271-394 (742)
50 PRK10689 transcription-repair 99.9 4.1E-21 8.9E-26 229.5 28.6 106 662-771 809-917 (1147)
51 COG0513 SrmB Superfamily II DN 99.9 1.7E-20 3.6E-25 209.5 28.9 133 645-786 260-392 (513)
52 PRK13767 ATP-dependent helicas 99.9 2.5E-20 5.4E-25 220.8 27.3 105 662-768 284-395 (876)
53 PRK02362 ski2-like helicase; P 99.9 7.2E-20 1.6E-24 215.2 29.4 108 662-771 243-395 (737)
54 KOG0333 U5 snRNP-like RNA heli 99.9 2.1E-20 4.4E-25 192.5 18.9 126 641-774 500-625 (673)
55 KOG0328 Predicted ATP-dependen 99.9 6.6E-20 1.4E-24 174.4 20.9 110 663-776 267-376 (400)
56 PRK01172 ski2-like helicase; P 99.8 4.7E-19 1E-23 207.0 29.2 99 662-763 236-368 (674)
57 TIGR00348 hsdR type I site-spe 99.8 7E-19 1.5E-23 202.5 27.0 107 662-770 514-648 (667)
58 COG1200 RecG RecG-like helicas 99.8 2.5E-18 5.4E-23 186.1 28.4 73 686-760 507-580 (677)
59 TIGR03714 secA2 accessory Sec 99.8 2.6E-18 5.6E-23 193.0 29.5 115 642-763 406-529 (762)
60 PRK00254 ski2-like helicase; P 99.8 2E-18 4.3E-23 202.5 29.2 85 688-774 297-389 (720)
61 TIGR01587 cas3_core CRISPR-ass 99.8 1.6E-18 3.4E-23 188.1 26.3 107 662-773 222-338 (358)
62 KOG0335 ATP-dependent RNA heli 99.8 5.7E-19 1.2E-23 184.8 21.6 123 643-767 313-440 (482)
63 KOG0350 DEAD-box ATP-dependent 99.8 1.6E-19 3.5E-24 185.0 16.3 108 661-772 428-539 (620)
64 KOG0336 ATP-dependent RNA heli 99.8 1.2E-18 2.5E-23 174.0 20.2 103 659-763 462-564 (629)
65 KOG0338 ATP-dependent RNA heli 99.8 2.5E-19 5.4E-24 183.8 15.8 107 663-773 427-533 (691)
66 COG4096 HsdR Type I site-speci 99.8 1.3E-18 2.9E-23 190.4 21.3 163 115-375 159-322 (875)
67 TIGR02621 cas3_GSU0051 CRISPR- 99.8 1.1E-17 2.4E-22 189.9 28.3 102 662-769 272-390 (844)
68 KOG0348 ATP-dependent RNA heli 99.8 4.9E-17 1.1E-21 168.1 29.0 128 645-776 408-557 (708)
69 TIGR00963 secA preprotein tran 99.8 1.5E-17 3.3E-22 185.6 24.8 118 643-766 388-512 (745)
70 PRK09200 preprotein translocas 99.8 1.2E-16 2.6E-21 181.6 32.2 130 643-783 411-548 (790)
71 COG0514 RecQ Superfamily II DN 99.8 1.3E-17 2.8E-22 181.5 20.5 108 662-773 230-337 (590)
72 KOG4284 DEAD box protein [Tran 99.8 1.4E-17 2.9E-22 175.5 19.7 113 655-770 265-377 (980)
73 KOG0343 RNA Helicase [RNA proc 99.8 2.4E-17 5.3E-22 170.9 21.2 136 643-787 298-435 (758)
74 PRK09401 reverse gyrase; Revie 99.8 6.1E-17 1.3E-21 194.4 26.1 103 645-758 316-431 (1176)
75 TIGR03158 cas3_cyano CRISPR-as 99.8 2.1E-16 4.5E-21 169.3 27.4 95 651-756 261-357 (357)
76 COG1201 Lhr Lhr-like helicases 99.8 1.6E-16 3.6E-21 179.5 26.9 124 651-781 244-368 (814)
77 KOG0342 ATP-dependent RNA heli 99.8 3.1E-17 6.8E-22 168.6 18.7 114 645-763 316-429 (543)
78 PRK12898 secA preprotein trans 99.8 7.1E-16 1.5E-20 171.6 30.8 130 643-783 456-593 (656)
79 KOG0340 ATP-dependent RNA heli 99.8 1.2E-16 2.5E-21 157.6 21.6 116 645-763 238-353 (442)
80 KOG0345 ATP-dependent RNA heli 99.7 3.2E-16 7E-21 160.0 24.2 134 643-786 240-375 (567)
81 PHA02653 RNA helicase NPH-II; 99.7 4.3E-16 9.3E-21 176.4 27.6 110 662-777 395-518 (675)
82 PRK05580 primosome assembly pr 99.7 3.8E-16 8.3E-21 180.0 26.8 95 674-770 438-548 (679)
83 PRK09751 putative ATP-dependen 99.7 6.1E-16 1.3E-20 186.2 27.0 95 662-758 244-371 (1490)
84 KOG0339 ATP-dependent RNA heli 99.7 3E-16 6.6E-21 161.1 20.2 127 643-776 452-578 (731)
85 COG1204 Superfamily II helicas 99.7 4.9E-16 1.1E-20 178.4 23.0 107 121-251 31-138 (766)
86 KOG0347 RNA helicase [RNA proc 99.7 8.2E-17 1.8E-21 167.0 12.5 100 664-766 465-564 (731)
87 KOG0326 ATP-dependent RNA heli 99.7 9.4E-17 2E-21 155.7 11.6 122 643-772 307-428 (459)
88 TIGR00595 priA primosomal prot 99.7 1.8E-15 3.8E-20 168.2 23.1 94 676-771 272-381 (505)
89 cd00079 HELICc Helicase superf 99.7 1.2E-16 2.6E-21 146.5 11.4 121 643-767 11-131 (131)
90 TIGR01970 DEAH_box_HrpB ATP-de 99.7 2E-15 4.3E-20 175.3 24.1 107 663-774 210-337 (819)
91 TIGR01054 rgy reverse gyrase. 99.7 2.4E-15 5.1E-20 181.1 24.6 86 647-742 316-408 (1171)
92 KOG0332 ATP-dependent RNA heli 99.7 1.4E-14 3.1E-19 143.9 25.1 125 643-775 315-446 (477)
93 COG1205 Distinct helicase fami 99.7 4.1E-15 8.9E-20 173.4 24.4 117 662-782 306-431 (851)
94 KOG0344 ATP-dependent RNA heli 99.7 1.3E-15 2.9E-20 160.6 17.8 115 643-763 372-487 (593)
95 KOG0341 DEAD-box protein abstr 99.7 4.9E-16 1.1E-20 154.3 12.5 127 644-779 408-534 (610)
96 PF04851 ResIII: Type III rest 99.7 5.2E-16 1.1E-20 151.6 12.4 165 120-374 2-183 (184)
97 PRK11664 ATP-dependent RNA hel 99.6 1.5E-14 3.2E-19 168.6 24.1 108 662-774 212-340 (812)
98 COG4889 Predicted helicase [Ge 99.6 4.1E-15 8.8E-20 161.6 17.2 76 687-763 500-577 (1518)
99 COG1202 Superfamily II helicas 99.6 1.7E-14 3.6E-19 150.9 20.2 107 663-772 441-552 (830)
100 COG1197 Mfd Transcription-repa 99.6 9.8E-14 2.1E-18 159.4 26.4 106 663-772 804-912 (1139)
101 PF00271 Helicase_C: Helicase 99.6 9.4E-16 2E-20 125.9 6.2 78 680-759 1-78 (78)
102 PRK12906 secA preprotein trans 99.6 2.2E-13 4.8E-18 154.0 27.2 117 643-765 423-547 (796)
103 PRK14701 reverse gyrase; Provi 99.6 7.9E-14 1.7E-18 171.4 25.2 104 647-761 320-446 (1638)
104 PRK13104 secA preprotein trans 99.6 1.1E-12 2.4E-17 149.2 30.9 129 643-782 427-593 (896)
105 KOG0334 RNA helicase [RNA proc 99.6 9.6E-14 2.1E-18 156.4 21.3 123 643-772 597-719 (997)
106 PRK12904 preprotein translocas 99.6 1E-12 2.2E-17 149.4 29.7 119 643-767 413-569 (830)
107 KOG0346 RNA helicase [RNA proc 99.6 2.4E-13 5.2E-18 138.0 20.7 106 663-772 269-409 (569)
108 PRK09694 helicase Cas3; Provis 99.6 4E-13 8.7E-18 156.2 25.4 98 661-761 559-665 (878)
109 cd00046 DEXDc DEAD-like helica 99.5 1.1E-13 2.3E-18 128.7 12.6 137 143-373 2-144 (144)
110 smart00487 DEXDc DEAD-like hel 99.5 1.1E-13 2.4E-18 136.9 13.3 160 120-376 7-173 (201)
111 KOG0327 Translation initiation 99.5 4.1E-13 8.9E-18 135.0 16.6 120 645-774 252-371 (397)
112 COG4098 comFA Superfamily II D 99.5 2.1E-11 4.6E-16 120.5 27.7 116 648-769 293-414 (441)
113 PRK11131 ATP-dependent RNA hel 99.5 1.3E-12 2.9E-17 155.0 23.0 108 661-775 285-413 (1294)
114 PRK13107 preprotein translocas 99.5 1.2E-11 2.6E-16 140.3 28.8 129 643-782 432-597 (908)
115 TIGR01967 DEAH_box_HrpA ATP-de 99.5 2.2E-12 4.7E-17 153.8 23.8 120 648-775 266-406 (1283)
116 smart00490 HELICc helicase sup 99.5 1.2E-13 2.6E-18 114.8 8.2 81 677-759 2-82 (82)
117 TIGR00631 uvrb excinuclease AB 99.5 6.3E-11 1.4E-15 135.2 32.9 133 643-782 425-564 (655)
118 COG0556 UvrB Helicase subunit 99.5 1.2E-10 2.7E-15 121.8 30.8 137 644-785 430-571 (663)
119 KOG0952 DNA/RNA helicase MER3/ 99.4 1.5E-11 3.1E-16 137.9 23.9 82 692-775 402-493 (1230)
120 PRK12900 secA preprotein trans 99.4 5.5E-11 1.2E-15 135.6 27.7 129 643-782 581-717 (1025)
121 KOG0337 ATP-dependent RNA heli 99.4 1.4E-12 3.1E-17 131.8 12.4 124 643-773 245-368 (529)
122 KOG0351 ATP-dependent DNA heli 99.4 1.7E-12 3.6E-17 150.5 14.2 108 659-768 482-589 (941)
123 cd00268 DEADc DEAD-box helicas 99.4 5.4E-12 1.2E-16 125.2 13.7 111 121-250 21-134 (203)
124 PRK05298 excinuclease ABC subu 99.4 9.6E-10 2.1E-14 126.7 32.8 123 643-772 429-556 (652)
125 KOG0352 ATP-dependent DNA heli 99.3 3.6E-11 7.8E-16 121.8 16.2 102 665-768 258-359 (641)
126 PF00270 DEAD: DEAD/DEAH box h 99.3 1.1E-11 2.3E-16 119.1 11.5 106 124-251 2-111 (169)
127 PRK12899 secA preprotein trans 99.3 1.8E-09 3.8E-14 123.2 30.6 128 643-782 551-687 (970)
128 PRK12326 preprotein translocas 99.3 8.7E-10 1.9E-14 122.4 27.2 130 643-783 410-554 (764)
129 COG1203 CRISPR-associated heli 99.2 6.6E-10 1.4E-14 130.0 22.9 127 661-791 439-570 (733)
130 KOG0353 ATP-dependent DNA heli 99.2 9.5E-10 2.1E-14 109.7 19.4 89 661-751 316-404 (695)
131 KOG0951 RNA helicase BRR2, DEA 99.2 8.4E-10 1.8E-14 125.7 21.2 96 142-246 326-422 (1674)
132 COG1198 PriA Primosomal protei 99.2 7.4E-10 1.6E-14 125.2 19.0 106 120-248 197-309 (730)
133 PRK13103 secA preprotein trans 99.1 1.8E-08 4E-13 115.0 26.8 120 642-767 431-587 (913)
134 PRK12903 secA preprotein trans 99.1 3.2E-08 6.9E-13 111.8 28.0 129 643-782 409-545 (925)
135 KOG0947 Cytoplasmic exosomal R 99.1 4.5E-08 9.6E-13 109.3 25.7 100 120-252 296-396 (1248)
136 KOG1513 Nuclear helicase MOP-3 99.0 7.6E-08 1.6E-12 105.0 24.3 92 704-797 849-948 (1300)
137 COG1110 Reverse gyrase [DNA re 99.0 3.4E-08 7.4E-13 111.5 21.7 86 646-742 324-416 (1187)
138 TIGR00596 rad1 DNA repair prot 99.0 7.7E-08 1.7E-12 111.5 24.2 43 642-684 268-317 (814)
139 COG4581 Superfamily II RNA hel 99.0 1.5E-07 3.1E-12 109.4 25.9 165 118-389 116-284 (1041)
140 PF13872 AAA_34: P-loop contai 98.9 2.2E-08 4.9E-13 100.3 14.4 110 121-250 37-151 (303)
141 PF11496 HDA2-3: Class II hist 98.9 1E-07 2.2E-12 97.9 19.5 222 479-784 5-256 (297)
142 TIGR01407 dinG_rel DnaQ family 98.9 2.8E-06 6.1E-11 102.0 32.5 115 646-766 659-809 (850)
143 CHL00122 secA preprotein trans 98.8 8.5E-07 1.8E-11 101.2 25.2 84 643-731 407-491 (870)
144 COG0610 Type I site-specific r 98.8 5.9E-07 1.3E-11 107.5 24.8 69 700-770 579-650 (962)
145 KOG0329 ATP-dependent RNA heli 98.8 4.9E-08 1.1E-12 92.7 10.1 45 718-762 302-346 (387)
146 PRK12901 secA preprotein trans 98.7 1.8E-06 3.8E-11 99.5 24.2 120 642-767 610-737 (1112)
147 PRK12902 secA preprotein trans 98.7 6E-06 1.3E-10 94.3 25.5 84 643-731 422-506 (939)
148 KOG0950 DNA polymerase theta/e 98.7 9.4E-07 2E-11 99.7 18.8 108 121-251 223-331 (1008)
149 KOG0949 Predicted helicase, DE 98.6 2.3E-06 4.9E-11 96.2 19.3 74 692-767 968-1042(1330)
150 PF13871 Helicase_C_4: Helicas 98.6 3.3E-07 7.1E-12 91.9 10.4 97 703-801 52-156 (278)
151 KOG0948 Nuclear exosomal RNA h 98.6 1.7E-06 3.8E-11 94.5 16.5 101 118-251 126-227 (1041)
152 KOG0922 DEAH-box RNA helicase 98.5 2.2E-05 4.8E-10 85.9 23.1 111 663-776 259-393 (674)
153 PF07652 Flavi_DEAD: Flaviviru 98.5 6.2E-07 1.4E-11 79.6 8.7 79 144-250 7-87 (148)
154 COG1643 HrpA HrpA-like helicas 98.4 1.3E-05 2.8E-10 92.9 20.7 109 662-776 259-390 (845)
155 KOG0349 Putative DEAD-box RNA 98.4 5.7E-07 1.2E-11 91.9 8.6 96 661-758 504-602 (725)
156 KOG0920 ATP-dependent RNA heli 98.3 0.00011 2.4E-09 85.1 23.5 125 645-774 396-545 (924)
157 PRK15483 type III restriction- 98.2 9.8E-06 2.1E-10 94.3 12.9 70 714-784 501-578 (986)
158 PF02399 Herpes_ori_bp: Origin 98.1 0.00071 1.5E-08 77.0 23.7 99 661-768 281-385 (824)
159 COG0653 SecA Preprotein transl 98.1 0.00027 5.9E-09 80.8 20.0 120 643-769 412-542 (822)
160 KOG0924 mRNA splicing factor A 98.0 0.00017 3.6E-09 78.6 15.5 92 686-780 597-704 (1042)
161 smart00489 DEXDc3 DEAD-like he 97.9 0.00012 2.7E-09 76.0 11.9 76 121-210 8-84 (289)
162 smart00488 DEXDc2 DEAD-like he 97.9 0.00012 2.7E-09 76.0 11.9 76 121-210 8-84 (289)
163 COG3587 Restriction endonuclea 97.8 0.0016 3.5E-08 73.4 20.0 47 713-759 482-528 (985)
164 KOG0923 mRNA splicing factor A 97.8 0.00075 1.6E-08 73.6 16.7 78 688-773 508-606 (902)
165 KOG0953 Mitochondrial RNA heli 97.8 0.00011 2.3E-09 78.5 9.4 99 661-763 357-466 (700)
166 KOG0925 mRNA splicing factor A 97.7 0.00058 1.3E-08 71.7 12.7 59 715-775 314-389 (699)
167 KOG0926 DEAH-box RNA helicase 97.6 0.0005 1.1E-08 76.5 12.0 75 692-772 610-703 (1172)
168 PF07517 SecA_DEAD: SecA DEAD- 97.6 0.00063 1.4E-08 68.7 12.0 102 121-251 77-182 (266)
169 TIGR03117 cas_csf4 CRISPR-asso 97.6 0.00067 1.5E-08 77.0 13.0 99 645-747 454-565 (636)
170 KOG1802 RNA helicase nonsense 97.5 0.00029 6.4E-09 76.6 8.3 80 121-227 410-490 (935)
171 PF13086 AAA_11: AAA domain; P 97.4 0.00093 2E-08 67.6 11.2 73 121-209 1-75 (236)
172 TIGR02562 cas3_yersinia CRISPR 97.4 0.046 9.9E-07 64.6 25.6 47 713-762 837-883 (1110)
173 PF15227 zf-C3HC4_4: zinc fing 97.2 0.0002 4.3E-09 49.7 2.1 40 561-600 1-42 (42)
174 PLN03208 E3 ubiquitin-protein 97.1 0.00037 8E-09 65.2 3.2 50 558-607 18-81 (193)
175 KOG0823 Predicted E3 ubiquitin 97.1 0.00023 5.1E-09 67.7 1.8 56 555-610 44-100 (230)
176 PF02562 PhoH: PhoH-like prote 97.0 0.00058 1.3E-08 66.1 3.7 44 121-169 4-47 (205)
177 PRK07246 bifunctional ATP-depe 96.9 0.0068 1.5E-07 72.3 12.6 114 646-766 633-778 (820)
178 PF13923 zf-C3HC4_2: Zinc fing 96.8 0.00059 1.3E-08 46.7 1.6 38 561-600 1-39 (39)
179 PRK10536 hypothetical protein; 96.8 0.0011 2.5E-08 65.9 4.1 40 337-378 178-217 (262)
180 KOG1803 DNA helicase [Replicat 96.7 0.0046 9.9E-08 67.5 7.9 68 118-208 182-250 (649)
181 PF13307 Helicase_C_2: Helicas 96.7 0.005 1.1E-07 58.4 7.4 99 662-766 9-145 (167)
182 PRK08074 bifunctional ATP-depe 96.7 0.016 3.5E-07 70.4 13.3 118 646-766 737-888 (928)
183 PRK14873 primosome assembly pr 96.6 0.0059 1.3E-07 70.5 8.9 76 150-246 169-251 (665)
184 PF00097 zf-C3HC4: Zinc finger 96.6 0.0011 2.4E-08 46.1 1.7 40 561-600 1-41 (41)
185 KOG4150 Predicted ATP-dependen 96.6 0.014 2.9E-07 62.8 10.3 115 642-760 507-629 (1034)
186 COG1199 DinG Rad3-related DNA 96.5 0.018 4E-07 67.9 12.2 117 645-766 463-612 (654)
187 KOG1132 Helicase of the DEAD s 96.4 0.023 5E-07 64.8 11.5 98 114-212 14-135 (945)
188 KOG0317 Predicted E3 ubiquitin 96.3 0.0022 4.7E-08 63.2 2.5 50 555-606 236-285 (293)
189 smart00504 Ubox Modified RING 96.3 0.003 6.5E-08 48.8 2.7 44 560-605 3-46 (63)
190 PF13401 AAA_22: AAA domain; P 96.3 0.0078 1.7E-07 54.5 5.8 35 337-373 89-125 (131)
191 PRK08074 bifunctional ATP-depe 96.2 0.031 6.7E-07 68.0 12.1 87 120-226 256-347 (928)
192 KOG2164 Predicted E3 ubiquitin 96.1 0.0025 5.4E-08 67.9 1.7 49 558-606 186-237 (513)
193 PF13920 zf-C3HC4_3: Zinc fing 96.0 0.0032 7E-08 45.9 1.5 45 559-605 3-48 (50)
194 TIGR00599 rad18 DNA repair pro 96.0 0.004 8.7E-08 66.1 2.7 47 558-606 26-72 (397)
195 PF09848 DUF2075: Uncharacteri 95.9 0.026 5.5E-07 60.9 8.5 48 145-209 5-53 (352)
196 TIGR00376 DNA helicase, putati 95.9 0.066 1.4E-06 62.1 12.3 78 120-224 156-234 (637)
197 KOG1805 DNA replication helica 95.8 0.048 1E-06 62.9 10.3 68 120-210 668-736 (1100)
198 COG5432 RAD18 RING-finger-cont 95.8 0.0047 1E-07 60.2 1.8 46 558-605 25-70 (391)
199 KOG0320 Predicted E3 ubiquitin 95.7 0.0052 1.1E-07 55.9 1.7 46 558-605 131-178 (187)
200 KOG0951 RNA helicase BRR2, DEA 95.6 2 4.3E-05 51.7 22.0 84 141-248 1159-1247(1674)
201 PHA02929 N1R/p28-like protein; 95.6 0.0079 1.7E-07 59.3 2.6 46 558-605 174-227 (238)
202 KOG0978 E3 ubiquitin ligase in 95.6 0.0047 1E-07 69.4 1.2 48 559-607 644-691 (698)
203 PHA02926 zinc finger-like prot 95.5 0.0084 1.8E-07 56.8 2.5 48 558-605 170-230 (242)
204 PF14835 zf-RING_6: zf-RING of 95.5 0.0094 2E-07 44.5 2.2 42 560-605 9-51 (65)
205 KOG0287 Postreplication repair 95.5 0.0052 1.1E-07 61.3 1.1 46 559-606 24-69 (442)
206 PF14634 zf-RING_5: zinc-RING 95.5 0.013 2.7E-07 41.4 2.8 39 561-601 2-43 (44)
207 TIGR01447 recD exodeoxyribonuc 95.4 0.077 1.7E-06 60.7 10.3 66 124-208 148-214 (586)
208 TIGR00604 rad3 DNA repair heli 95.4 0.11 2.4E-06 61.6 12.0 119 646-766 507-669 (705)
209 smart00492 HELICc3 helicase su 95.3 0.11 2.3E-06 47.6 9.0 46 697-743 32-79 (141)
210 PRK11747 dinG ATP-dependent DN 95.3 0.13 2.8E-06 60.6 11.9 92 645-743 519-616 (697)
211 COG5574 PEX10 RING-finger-cont 95.3 0.008 1.7E-07 58.5 1.5 49 556-604 213-261 (271)
212 PF13445 zf-RING_UBOX: RING-ty 95.3 0.0065 1.4E-07 42.2 0.7 37 561-598 1-43 (43)
213 PRK10875 recD exonuclease V su 95.3 0.049 1.1E-06 62.4 8.0 39 335-375 265-303 (615)
214 TIGR01448 recD_rel helicase, p 95.1 0.094 2E-06 61.9 10.1 65 120-206 322-386 (720)
215 PF13604 AAA_30: AAA domain; P 95.1 0.084 1.8E-06 51.5 8.2 57 122-200 2-58 (196)
216 PF06862 DUF1253: Protein of u 95.0 0.42 9.2E-06 52.0 13.8 129 643-772 280-414 (442)
217 PRK11747 dinG ATP-dependent DN 94.9 0.21 4.7E-06 58.8 12.3 40 120-159 24-67 (697)
218 PRK07246 bifunctional ATP-depe 94.7 0.27 5.8E-06 59.0 12.5 85 120-225 244-330 (820)
219 KOG1785 Tyrosine kinase negati 94.7 0.017 3.6E-07 59.1 1.9 48 558-605 369-416 (563)
220 smart00184 RING Ring finger. E 94.7 0.029 6.3E-07 37.9 2.6 39 561-600 1-39 (39)
221 COG0553 HepA Superfamily II DN 94.4 0.023 5E-07 69.9 2.8 93 645-761 432-524 (866)
222 cd00162 RING RING-finger (Real 94.4 0.031 6.8E-07 39.3 2.4 42 561-603 2-44 (45)
223 PF05876 Terminase_GpA: Phage 94.2 0.17 3.7E-06 57.7 9.1 75 111-206 6-81 (557)
224 PF04564 U-box: U-box domain; 94.1 0.078 1.7E-06 42.1 4.3 48 559-607 5-52 (73)
225 smart00491 HELICc2 helicase su 94.1 0.26 5.6E-06 45.1 8.2 43 700-743 32-80 (142)
226 PF13639 zf-RING_2: Ring finge 94.0 0.017 3.6E-07 40.8 0.2 40 560-601 2-44 (44)
227 PF12340 DUF3638: Protein of u 94.0 0.29 6.2E-06 48.1 8.7 109 120-249 22-144 (229)
228 TIGR00570 cdk7 CDK-activating 93.9 0.049 1.1E-06 55.4 3.3 48 559-607 4-56 (309)
229 PRK04296 thymidine kinase; Pro 93.8 0.31 6.8E-06 47.3 8.8 23 145-167 6-28 (190)
230 KOG2660 Locus-specific chromos 93.4 0.022 4.7E-07 57.5 -0.0 46 558-605 15-61 (331)
231 TIGR02881 spore_V_K stage V sp 93.3 0.12 2.6E-06 53.1 5.2 24 143-166 44-67 (261)
232 KOG2879 Predicted E3 ubiquitin 93.1 0.055 1.2E-06 53.0 2.2 51 555-605 236-287 (298)
233 PRK06526 transposase; Provisio 92.4 0.3 6.6E-06 49.6 6.6 26 142-167 99-124 (254)
234 PHA02533 17 large terminase pr 91.9 1 2.3E-05 50.9 10.7 41 120-165 58-98 (534)
235 TIGR03420 DnaA_homol_Hda DnaA 91.7 1.5 3.4E-05 43.7 10.8 25 142-166 39-63 (226)
236 TIGR02880 cbbX_cfxQ probable R 91.3 0.39 8.3E-06 49.9 6.0 25 143-167 60-84 (284)
237 cd00009 AAA The AAA+ (ATPases 91.2 1.4 3E-05 40.1 9.3 24 142-165 20-43 (151)
238 PRK12723 flagellar biosynthesi 91.0 1.5 3.3E-05 47.4 10.2 55 335-389 254-313 (388)
239 PLN03025 replication factor C 90.8 1.7 3.7E-05 46.2 10.5 55 335-389 99-154 (319)
240 COG1875 NYN ribonuclease and A 90.5 0.32 7E-06 50.4 4.4 39 336-376 352-390 (436)
241 KOG4172 Predicted E3 ubiquitin 90.5 0.079 1.7E-06 37.7 0.0 46 559-605 8-54 (62)
242 TIGR00604 rad3 DNA repair heli 90.4 0.63 1.4E-05 55.3 7.4 73 121-210 10-83 (705)
243 TIGR03117 cas_csf4 CRISPR-asso 90.4 2.3 5.1E-05 48.9 11.5 83 126-226 2-88 (636)
244 CHL00181 cbbX CbbX; Provisiona 90.2 0.61 1.3E-05 48.4 6.3 23 144-166 62-84 (287)
245 PRK08084 DNA replication initi 90.1 1.6 3.6E-05 43.9 9.2 24 142-165 46-69 (235)
246 KOG0952 DNA/RNA helicase MER3/ 89.7 0.43 9.4E-06 55.9 5.0 87 143-247 945-1032(1230)
247 PF13245 AAA_19: Part of AAA d 89.7 0.67 1.4E-05 37.1 4.8 49 144-207 13-62 (76)
248 COG5152 Uncharacterized conser 89.5 0.12 2.7E-06 47.6 0.4 47 554-602 192-238 (259)
249 PRK08116 hypothetical protein; 89.3 2.8 6E-05 43.1 10.3 26 142-167 115-140 (268)
250 PRK07003 DNA polymerase III su 89.3 1.9 4.2E-05 50.0 9.7 24 143-166 40-63 (830)
251 COG3421 Uncharacterized protei 89.3 0.46 1E-05 52.2 4.5 84 147-251 3-97 (812)
252 KOG2177 Predicted E3 ubiquitin 89.2 0.19 4.1E-06 54.0 1.7 43 557-601 12-54 (386)
253 PF06733 DEAD_2: DEAD_2; Inte 88.6 0.23 5.1E-06 47.4 1.7 17 233-249 117-133 (174)
254 KOG0824 Predicted E3 ubiquitin 88.1 0.31 6.7E-06 48.7 2.2 53 558-611 7-59 (324)
255 TIGR03015 pepcterm_ATPase puta 88.0 1.3 2.8E-05 45.7 7.0 41 125-165 27-67 (269)
256 smart00382 AAA ATPases associa 87.9 1.3 2.8E-05 39.9 6.3 24 143-166 4-27 (148)
257 PRK14949 DNA polymerase III su 87.6 2.7 5.9E-05 49.8 9.7 25 142-166 38-63 (944)
258 PRK14956 DNA polymerase III su 87.6 2.6 5.6E-05 46.6 9.1 23 144-166 43-65 (484)
259 PRK08727 hypothetical protein; 87.5 2.9 6.3E-05 42.0 8.9 24 143-166 43-66 (233)
260 PRK05703 flhF flagellar biosyn 87.0 3.6 7.8E-05 45.3 9.9 54 335-389 299-358 (424)
261 PRK05707 DNA polymerase III su 86.8 1.8 3.9E-05 45.9 7.2 46 121-167 3-48 (328)
262 PRK14087 dnaA chromosomal repl 86.7 4.4 9.5E-05 45.1 10.5 25 142-166 142-166 (450)
263 PRK14960 DNA polymerase III su 86.0 4 8.6E-05 46.9 9.6 24 143-166 39-62 (702)
264 KOG4265 Predicted E3 ubiquitin 85.8 0.35 7.6E-06 49.8 1.1 49 556-606 288-337 (349)
265 PRK00149 dnaA chromosomal repl 85.6 5.9 0.00013 44.3 11.0 26 142-167 149-174 (450)
266 PF05621 TniB: Bacterial TniB 85.5 5 0.00011 41.3 9.3 43 331-373 141-189 (302)
267 PRK08181 transposase; Validate 85.4 4.6 0.0001 41.4 9.0 45 122-167 88-132 (269)
268 PF14447 Prok-RING_4: Prokaryo 85.3 0.53 1.1E-05 34.2 1.5 44 559-606 8-51 (55)
269 PRK06835 DNA replication prote 85.2 6.3 0.00014 41.8 10.2 47 121-167 160-209 (329)
270 PRK00440 rfc replication facto 85.1 7.9 0.00017 41.0 11.3 23 143-165 40-62 (319)
271 KOG1813 Predicted E3 ubiquitin 84.9 0.4 8.6E-06 47.8 1.0 50 553-604 236-285 (313)
272 PRK14974 cell division protein 84.7 8.2 0.00018 41.0 10.8 23 144-166 143-165 (336)
273 PRK06893 DNA replication initi 84.3 9 0.00019 38.4 10.6 23 144-166 42-64 (229)
274 PRK12402 replication factor C 84.1 0.74 1.6E-05 49.4 2.8 24 143-166 38-61 (337)
275 TIGR00362 DnaA chromosomal rep 84.1 6.6 0.00014 43.3 10.4 24 143-166 138-161 (405)
276 TIGR02768 TraA_Ti Ti-type conj 84.1 4.5 9.8E-05 48.2 9.5 58 120-200 351-408 (744)
277 PTZ00112 origin recognition co 83.8 15 0.00033 43.6 12.9 45 122-166 759-806 (1164)
278 PRK10917 ATP-dependent DNA hel 83.8 5.6 0.00012 47.0 10.1 95 641-738 291-389 (681)
279 PRK04195 replication factor C 83.4 9.8 0.00021 43.0 11.6 25 141-165 39-63 (482)
280 PRK05642 DNA replication initi 83.4 5 0.00011 40.3 8.3 37 336-372 98-138 (234)
281 COG5236 Uncharacterized conser 83.4 1.5 3.2E-05 44.5 4.3 53 553-605 56-108 (493)
282 COG1199 DinG Rad3-related DNA 83.4 2.5 5.5E-05 50.0 7.1 72 120-210 14-86 (654)
283 PHA03368 DNA packaging termina 83.3 4.4 9.6E-05 46.1 8.3 21 330-350 347-367 (738)
284 PRK14961 DNA polymerase III su 82.6 7.6 0.00016 42.0 9.9 23 144-166 41-63 (363)
285 PF12678 zf-rbx1: RING-H2 zinc 82.6 0.89 1.9E-05 36.1 2.0 28 572-601 46-73 (73)
286 PF11789 zf-Nse: Zinc-finger o 82.5 0.61 1.3E-05 34.8 1.0 44 556-599 9-53 (57)
287 PRK14088 dnaA chromosomal repl 82.2 17 0.00037 40.4 12.6 25 142-166 131-155 (440)
288 PRK07764 DNA polymerase III su 82.1 6.4 0.00014 47.2 9.7 24 143-166 39-62 (824)
289 PRK09112 DNA polymerase III su 81.9 2.9 6.2E-05 44.8 6.2 47 120-167 23-71 (351)
290 PRK12323 DNA polymerase III su 81.9 8.3 0.00018 44.3 9.9 25 143-167 40-64 (700)
291 PRK14086 dnaA chromosomal repl 81.7 11 0.00025 43.0 11.0 24 143-166 316-339 (617)
292 PRK14958 DNA polymerase III su 81.5 11 0.00024 42.7 10.9 24 144-167 41-64 (509)
293 PF13177 DNA_pol3_delta2: DNA 81.1 12 0.00026 35.2 9.4 44 126-169 2-47 (162)
294 PHA02544 44 clamp loader, smal 81.0 9.7 0.00021 40.3 10.0 40 336-375 101-142 (316)
295 PRK07994 DNA polymerase III su 80.4 8.2 0.00018 44.7 9.5 24 144-167 41-64 (647)
296 PRK06921 hypothetical protein; 80.3 12 0.00025 38.5 9.7 27 141-167 117-143 (266)
297 COG0464 SpoVK ATPases of the A 80.2 2.8 6.1E-05 47.6 5.8 69 121-211 249-324 (494)
298 PRK05580 primosome assembly pr 80.2 15 0.00032 43.4 11.8 97 640-741 170-267 (679)
299 PRK11889 flhF flagellar biosyn 80.1 10 0.00022 40.8 9.3 22 145-166 245-266 (436)
300 KOG4159 Predicted E3 ubiquitin 80.0 0.95 2.1E-05 48.5 1.8 46 558-605 84-129 (398)
301 PHA03333 putative ATPase subun 79.9 33 0.00072 39.6 13.6 41 331-374 290-332 (752)
302 PRK12422 chromosomal replicati 79.5 8.9 0.00019 42.6 9.2 25 142-166 142-166 (445)
303 cd01121 Sms Sms (bacterial rad 79.4 9.2 0.0002 41.3 9.0 23 144-166 85-107 (372)
304 PRK14952 DNA polymerase III su 79.4 10 0.00022 43.5 9.8 24 144-167 38-61 (584)
305 TIGR00595 priA primosomal prot 79.4 12 0.00026 42.4 10.4 96 640-740 5-101 (505)
306 COG5222 Uncharacterized conser 78.9 1.2 2.7E-05 44.0 1.9 45 558-603 274-319 (427)
307 PRK11054 helD DNA helicase IV; 78.7 2.5 5.3E-05 49.6 4.7 70 120-211 195-265 (684)
308 PF00265 TK: Thymidine kinase; 78.6 6.2 0.00013 37.6 6.6 33 336-371 77-110 (176)
309 COG3972 Superfamily I DNA and 78.4 10 0.00022 41.3 8.6 38 336-376 296-334 (660)
310 KOG0311 Predicted E3 ubiquitin 78.3 0.65 1.4E-05 47.5 -0.1 49 556-605 41-90 (381)
311 PHA03372 DNA packaging termina 78.0 5.7 0.00012 44.7 6.9 20 331-350 295-314 (668)
312 cd01120 RecA-like_NTPases RecA 77.9 17 0.00037 33.5 9.7 22 145-166 3-24 (165)
313 PF00580 UvrD-helicase: UvrD/R 77.6 2.9 6.2E-05 44.1 4.6 67 122-210 1-68 (315)
314 TIGR00643 recG ATP-dependent D 77.3 11 0.00024 44.1 9.7 95 641-738 265-363 (630)
315 PRK08691 DNA polymerase III su 76.9 21 0.00046 41.5 11.2 24 143-166 40-63 (709)
316 COG1435 Tdk Thymidine kinase [ 76.6 11 0.00024 36.0 7.4 34 336-372 83-118 (201)
317 PRK14955 DNA polymerase III su 76.2 16 0.00036 40.0 10.1 25 143-167 40-64 (397)
318 KOG0802 E3 ubiquitin ligase [P 75.9 1.1 2.4E-05 51.2 0.9 48 555-604 288-340 (543)
319 PF00448 SRP54: SRP54-type pro 75.8 5.4 0.00012 38.8 5.5 24 145-168 5-28 (196)
320 CHL00095 clpC Clp protease ATP 75.7 9.3 0.0002 46.3 8.6 25 142-166 201-225 (821)
321 cd00561 CobA_CobO_BtuR ATP:cor 75.6 2.8 6.1E-05 39.0 3.3 53 332-387 92-148 (159)
322 COG1110 Reverse gyrase [DNA re 75.3 10 0.00022 45.2 8.2 63 662-725 125-193 (1187)
323 KOG1039 Predicted E3 ubiquitin 75.3 1.7 3.6E-05 45.6 1.9 49 558-606 161-222 (344)
324 PF12861 zf-Apc11: Anaphase-pr 75.3 3.6 7.8E-05 33.3 3.3 34 572-605 48-82 (85)
325 TIGR00708 cobA cob(I)alamin ad 74.9 1.1 2.4E-05 42.2 0.4 55 331-388 93-151 (173)
326 PRK06645 DNA polymerase III su 74.9 15 0.00033 41.4 9.4 25 142-166 44-68 (507)
327 PRK09183 transposase/IS protei 74.6 14 0.00031 37.7 8.5 24 142-165 103-126 (259)
328 PF03354 Terminase_1: Phage Te 74.6 14 0.00031 41.6 9.3 43 124-166 1-47 (477)
329 TIGR03345 VI_ClpV1 type VI sec 73.8 10 0.00022 45.9 8.3 40 126-165 192-232 (852)
330 KOG1807 Helicases [Replication 73.6 11 0.00025 43.2 7.7 73 120-210 377-450 (1025)
331 PRK05986 cob(I)alamin adenolsy 73.1 6.8 0.00015 37.6 5.2 55 331-388 111-169 (191)
332 PRK09111 DNA polymerase III su 72.9 15 0.00032 42.5 8.9 25 143-167 48-72 (598)
333 PRK14964 DNA polymerase III su 72.7 19 0.0004 40.4 9.4 25 142-166 36-60 (491)
334 PRK06647 DNA polymerase III su 72.7 18 0.00038 41.6 9.4 23 144-166 41-63 (563)
335 PRK07940 DNA polymerase III su 72.6 4.1 8.9E-05 44.3 4.2 26 142-167 37-62 (394)
336 TIGR00365 monothiol glutaredox 72.5 26 0.00057 29.5 8.2 57 663-719 12-74 (97)
337 PRK14959 DNA polymerase III su 72.4 19 0.00042 41.4 9.5 25 142-166 39-63 (624)
338 PRK08903 DnaA regulatory inact 72.0 21 0.00046 35.5 9.0 24 142-165 43-66 (227)
339 TIGR01547 phage_term_2 phage t 71.9 11 0.00025 41.2 7.6 38 336-375 102-142 (396)
340 PRK10865 protein disaggregatio 71.7 12 0.00025 45.6 8.1 37 130-166 187-224 (857)
341 PRK13889 conjugal transfer rel 71.7 20 0.00042 43.9 9.8 42 336-379 434-476 (988)
342 PRK13342 recombination factor 71.5 9.4 0.0002 42.2 6.8 23 142-164 37-59 (413)
343 PRK14948 DNA polymerase III su 70.9 26 0.00056 40.8 10.3 26 142-167 39-64 (620)
344 KOG0297 TNF receptor-associate 70.7 2.7 5.7E-05 45.7 2.2 48 558-607 21-69 (391)
345 KOG4739 Uncharacterized protei 70.6 2.4 5.3E-05 41.4 1.7 43 560-606 5-49 (233)
346 COG4098 comFA Superfamily II D 69.7 12 0.00026 38.8 6.4 62 638-701 122-185 (441)
347 KOG0739 AAA+-type ATPase [Post 69.7 16 0.00035 37.2 7.0 49 141-211 166-214 (439)
348 COG1484 DnaC DNA replication p 69.6 11 0.00023 38.5 6.2 48 142-208 106-153 (254)
349 PRK14969 DNA polymerase III su 69.4 43 0.00093 38.2 11.6 24 143-166 40-63 (527)
350 PRK07952 DNA replication prote 69.4 14 0.00029 37.4 6.8 44 124-167 79-125 (244)
351 PRK14963 DNA polymerase III su 69.4 28 0.0006 39.4 9.9 22 145-166 40-61 (504)
352 TIGR02640 gas_vesic_GvpN gas v 69.4 12 0.00026 38.4 6.5 39 124-163 5-43 (262)
353 COG1198 PriA Primosomal protei 69.3 15 0.00032 43.1 7.8 81 637-720 222-303 (730)
354 KOG0827 Predicted E3 ubiquitin 69.3 2.7 5.8E-05 43.6 1.7 46 558-603 4-54 (465)
355 TIGR02688 conserved hypothetic 69.1 16 0.00035 39.7 7.5 23 142-164 210-232 (449)
356 PRK04132 replication factor C 69.1 12 0.00026 44.7 7.2 53 335-389 630-685 (846)
357 COG5540 RING-finger-containing 69.0 2.6 5.6E-05 42.2 1.5 45 559-604 324-371 (374)
358 KOG1131 RNA polymerase II tran 68.9 13 0.00028 40.7 6.6 71 121-208 16-88 (755)
359 KOG0298 DEAD box-containing he 68.4 2.2 4.7E-05 51.5 0.9 143 643-791 1202-1344(1394)
360 cd01124 KaiC KaiC is a circadi 68.2 7.9 0.00017 37.2 4.8 47 144-209 2-48 (187)
361 PF01695 IstB_IS21: IstB-like 68.1 3.7 8.1E-05 39.2 2.4 26 142-167 48-73 (178)
362 COG3973 Superfamily I DNA and 68.1 13 0.00028 41.7 6.6 48 145-205 230-277 (747)
363 cd01125 repA Hexameric Replica 67.7 30 0.00066 34.8 9.1 61 144-211 4-67 (239)
364 PRK08451 DNA polymerase III su 67.6 34 0.00074 38.8 10.1 22 145-166 40-61 (535)
365 TIGR00580 mfd transcription-re 67.4 26 0.00056 42.8 9.7 95 641-738 481-579 (926)
366 PRK14950 DNA polymerase III su 67.4 25 0.00055 40.7 9.4 22 145-166 42-63 (585)
367 PRK11034 clpA ATP-dependent Cl 66.8 17 0.00036 43.4 7.8 24 142-165 208-231 (758)
368 PRK13341 recombination factor 66.8 13 0.00028 44.0 6.8 22 142-163 53-74 (725)
369 COG5243 HRD1 HRD ubiquitin lig 66.7 4.1 8.8E-05 42.0 2.3 55 553-609 282-349 (491)
370 COG1224 TIP49 DNA helicase TIP 66.6 5.6 0.00012 41.5 3.3 36 131-166 55-90 (450)
371 PRK13826 Dtr system oriT relax 66.3 41 0.00088 41.7 11.0 42 337-380 470-512 (1102)
372 PRK05563 DNA polymerase III su 65.9 34 0.00073 39.4 9.9 24 143-166 40-63 (559)
373 TIGR03346 chaperone_ClpB ATP-d 65.6 26 0.00057 42.7 9.5 37 129-165 181-218 (852)
374 PRK14722 flhF flagellar biosyn 65.5 29 0.00063 37.4 8.7 24 143-166 139-162 (374)
375 PRK10824 glutaredoxin-4; Provi 65.4 38 0.00082 29.6 7.8 71 651-725 6-83 (115)
376 KOG4628 Predicted E3 ubiquitin 65.3 5.2 0.00011 41.9 2.9 47 559-606 230-279 (348)
377 KOG0738 AAA+-type ATPase [Post 64.9 8.8 0.00019 40.6 4.4 50 138-210 242-292 (491)
378 TIGR02639 ClpA ATP-dependent C 64.6 31 0.00068 41.2 9.7 37 130-166 191-228 (731)
379 PF06068 TIP49: TIP49 C-termin 63.9 5.9 0.00013 41.9 3.0 41 126-166 32-75 (398)
380 PRK14954 DNA polymerase III su 63.8 25 0.00055 40.7 8.3 42 126-167 21-64 (620)
381 PRK14965 DNA polymerase III su 63.4 49 0.0011 38.3 10.6 24 143-166 40-63 (576)
382 PRK14873 primosome assembly pr 61.6 39 0.00084 39.7 9.4 78 642-723 170-249 (665)
383 PRK10416 signal recognition pa 60.7 44 0.00095 35.3 8.9 22 146-167 119-140 (318)
384 PF13607 Succ_CoA_lig: Succiny 59.7 51 0.0011 29.9 7.9 86 664-770 3-90 (138)
385 cd03028 GRX_PICOT_like Glutare 59.7 43 0.00092 27.7 7.0 56 663-718 8-69 (90)
386 PHA00350 putative assembly pro 59.7 25 0.00055 38.1 6.9 14 148-161 8-21 (399)
387 COG1200 RecG RecG-like helicas 59.4 55 0.0012 37.6 9.6 89 646-738 298-390 (677)
388 COG4626 Phage terminase-like p 58.8 68 0.0015 36.0 10.1 79 116-209 56-140 (546)
389 PRK14953 DNA polymerase III su 58.6 51 0.0011 37.2 9.4 23 144-166 41-63 (486)
390 PRK11823 DNA repair protein Ra 58.6 25 0.00054 39.2 6.9 46 145-209 84-129 (446)
391 PRK10689 transcription-repair 58.2 47 0.001 41.8 9.8 96 640-738 629-728 (1147)
392 PRK12377 putative replication 57.6 32 0.00068 34.9 6.9 26 142-167 102-127 (248)
393 COG2256 MGS1 ATPase related to 57.5 45 0.00097 35.8 8.0 21 141-161 48-68 (436)
394 KOG0953 Mitochondrial RNA heli 56.9 26 0.00056 38.9 6.3 38 335-373 275-314 (700)
395 PF00308 Bac_DnaA: Bacterial d 55.8 84 0.0018 31.1 9.6 37 335-371 97-137 (219)
396 PRK10919 ATP-dependent DNA hel 55.8 20 0.00043 42.4 5.9 69 122-212 3-72 (672)
397 PF13173 AAA_14: AAA domain 55.8 8.7 0.00019 34.3 2.3 35 336-374 62-99 (128)
398 KOG2340 Uncharacterized conser 55.4 84 0.0018 34.9 9.7 129 643-772 533-667 (698)
399 COG0552 FtsY Signal recognitio 55.2 23 0.0005 37.0 5.4 49 335-383 221-279 (340)
400 PRK06450 threonine synthase; V 54.9 1.1E+02 0.0025 32.5 11.0 101 639-746 75-175 (338)
401 KOG1942 DNA helicase, TBP-inte 54.9 12 0.00026 37.8 3.2 33 133-165 56-88 (456)
402 PF01443 Viral_helicase1: Vira 54.8 29 0.00063 34.6 6.3 42 335-379 62-103 (234)
403 KOG0826 Predicted E3 ubiquitin 54.6 5.7 0.00012 40.5 1.0 52 554-607 296-348 (357)
404 PF12846 AAA_10: AAA-like doma 54.5 16 0.00034 38.1 4.5 45 143-206 3-47 (304)
405 PRK07471 DNA polymerase III su 54.0 53 0.0012 35.5 8.3 42 126-167 24-67 (365)
406 TIGR00678 holB DNA polymerase 53.6 42 0.00092 32.2 7.0 25 143-167 16-40 (188)
407 PRK13709 conjugal transfer nic 53.6 46 0.001 43.4 8.8 44 119-165 965-1008(1747)
408 PHA00012 I assembly protein 52.7 23 0.00049 37.0 4.9 23 146-168 6-28 (361)
409 COG2247 LytB Putative cell wal 51.9 67 0.0015 33.2 7.9 66 661-732 75-145 (337)
410 PF06745 KaiC: KaiC; InterPro 51.7 19 0.00042 35.8 4.4 49 144-210 22-70 (226)
411 PF07015 VirC1: VirC1 protein; 51.2 45 0.00098 33.1 6.5 19 151-169 12-30 (231)
412 PRK06731 flhF flagellar biosyn 50.9 1.3E+02 0.0028 31.0 10.1 52 335-387 154-210 (270)
413 PRK15483 type III restriction- 50.9 43 0.00093 40.6 7.5 90 142-248 60-175 (986)
414 TIGR00416 sms DNA repair prote 50.6 68 0.0015 35.8 8.8 46 145-209 98-143 (454)
415 cd01129 PulE-GspE PulE/GspE Th 50.6 22 0.00047 36.5 4.6 43 121-166 63-105 (264)
416 TIGR01075 uvrD DNA helicase II 50.5 40 0.00087 40.3 7.4 71 120-212 3-74 (715)
417 COG5219 Uncharacterized conser 50.4 9 0.0002 44.6 1.8 47 559-605 1470-1523(1525)
418 cd00046 DEXDc DEAD-like helica 50.3 80 0.0017 27.7 8.0 96 641-741 9-111 (144)
419 PRK08939 primosomal protein Dn 50.3 45 0.00097 35.0 6.9 26 142-167 157-182 (306)
420 PRK05973 replicative DNA helic 50.2 16 0.00036 36.5 3.4 24 144-167 67-90 (237)
421 KOG1133 Helicase of the DEAD s 50.1 1.5E+02 0.0034 34.2 11.0 118 647-769 615-777 (821)
422 KOG1734 Predicted RING-contain 49.1 7.9 0.00017 38.2 1.0 48 558-605 224-281 (328)
423 KOG2932 E3 ubiquitin ligase in 48.7 10 0.00022 38.3 1.6 41 560-604 92-133 (389)
424 smart00744 RINGv The RING-vari 48.6 17 0.00037 26.1 2.4 41 561-601 2-49 (49)
425 TIGR01074 rep ATP-dependent DN 48.5 32 0.0007 40.7 6.2 69 122-212 2-71 (664)
426 PRK14712 conjugal transfer nic 48.2 1E+02 0.0022 40.0 10.4 43 118-163 832-874 (1623)
427 PF14570 zf-RING_4: RING/Ubox 48.2 13 0.00028 26.5 1.7 29 575-604 19-47 (48)
428 KOG4275 Predicted E3 ubiquitin 47.9 4.9 0.00011 40.1 -0.6 41 558-604 300-341 (350)
429 COG1419 FlhF Flagellar GTP-bin 47.8 1.2E+02 0.0027 32.7 9.6 54 336-391 282-341 (407)
430 PRK00771 signal recognition pa 47.7 25 0.00055 38.8 4.7 25 143-167 97-121 (437)
431 PRK14971 DNA polymerase III su 47.7 1.4E+02 0.003 34.9 10.9 24 143-166 41-64 (614)
432 PF07726 AAA_3: ATPase family 47.4 9.9 0.00021 33.8 1.2 23 144-166 2-24 (131)
433 PRK11773 uvrD DNA-dependent he 46.9 42 0.00091 40.2 6.8 71 120-212 8-79 (721)
434 TIGR02370 pyl_corrinoid methyl 46.8 2.7E+02 0.0059 27.0 11.3 99 646-766 64-170 (197)
435 PRK07399 DNA polymerase III su 46.7 1.3E+02 0.0029 31.6 9.8 26 142-167 27-52 (314)
436 PRK10867 signal recognition pa 46.6 36 0.00079 37.5 5.7 25 144-168 103-127 (433)
437 COG1222 RPT1 ATP-dependent 26S 46.2 29 0.00062 36.6 4.5 26 140-165 184-209 (406)
438 PF02606 LpxK: Tetraacyldisacc 46.1 30 0.00065 36.7 4.8 52 151-206 47-98 (326)
439 PF03237 Terminase_6: Terminas 46.1 79 0.0017 34.0 8.5 20 331-350 93-112 (384)
440 KOG1133 Helicase of the DEAD s 45.7 28 0.00061 39.7 4.6 46 120-166 14-59 (821)
441 TIGR01242 26Sp45 26S proteasom 45.6 56 0.0012 35.4 7.0 25 141-165 156-180 (364)
442 COG4646 DNA methylase [Transcr 45.4 12 0.00027 40.1 1.7 30 363-392 473-502 (637)
443 PTZ00454 26S protease regulato 45.3 27 0.00058 38.2 4.5 24 141-164 179-202 (398)
444 KOG0740 AAA+-type ATPase [Post 45.2 18 0.0004 39.3 3.1 51 139-211 184-234 (428)
445 PRK03992 proteasome-activating 45.1 28 0.00062 38.0 4.7 25 141-165 165-189 (389)
446 KOG0741 AAA+-type ATPase [Post 44.8 35 0.00075 37.8 5.0 28 139-166 254-283 (744)
447 cd01524 RHOD_Pyr_redox Member 44.7 36 0.00078 27.9 4.2 37 661-697 50-86 (90)
448 KOG3800 Predicted E3 ubiquitin 44.3 15 0.00032 37.0 2.0 33 572-605 19-51 (300)
449 COG1702 PhoH Phosphate starvat 44.1 11 0.00025 39.2 1.3 40 337-378 245-284 (348)
450 PRK12727 flagellar biosynthesi 43.9 1.9E+02 0.004 32.9 10.6 21 146-166 355-375 (559)
451 KOG0701 dsRNA-specific nucleas 43.7 11 0.00024 47.7 1.3 93 666-760 296-400 (1606)
452 cd03031 GRX_GRX_like Glutaredo 43.1 98 0.0021 28.4 7.1 56 664-719 1-67 (147)
453 PRK12724 flagellar biosynthesi 42.6 1.2E+02 0.0026 33.2 8.8 21 145-165 227-247 (432)
454 KOG0731 AAA+-type ATPase conta 42.4 13 0.00027 43.5 1.4 24 141-164 344-367 (774)
455 PF13500 AAA_26: AAA domain; P 42.1 16 0.00034 35.6 1.9 27 144-170 4-30 (199)
456 PF10593 Z1: Z1 domain; Inter 41.9 1.8E+02 0.0039 29.2 9.4 111 670-789 95-208 (239)
457 TIGR03880 KaiC_arch_3 KaiC dom 41.8 38 0.00083 33.6 4.7 47 145-210 20-66 (224)
458 cd01520 RHOD_YbbB Member of th 41.7 61 0.0013 28.8 5.6 38 660-697 84-122 (128)
459 TIGR02533 type_II_gspE general 41.1 33 0.00071 38.7 4.5 41 121-165 225-266 (486)
460 cd03418 GRX_GRXb_1_3_like Glut 41.0 1.2E+02 0.0027 23.5 6.7 57 664-720 1-58 (75)
461 PRK13833 conjugal transfer pro 40.8 52 0.0011 34.7 5.6 40 122-165 129-168 (323)
462 cd01518 RHOD_YceA Member of th 40.7 66 0.0014 27.0 5.4 38 660-697 59-97 (101)
463 PRK08058 DNA polymerase III su 40.0 1.1E+02 0.0025 32.4 8.2 43 125-167 10-54 (329)
464 TIGR00682 lpxK tetraacyldisacc 39.9 48 0.001 34.8 5.1 20 150-169 39-58 (311)
465 TIGR00347 bioD dethiobiotin sy 39.9 28 0.0006 32.7 3.2 25 145-169 2-26 (166)
466 PF12775 AAA_7: P-loop contain 39.8 26 0.00057 36.0 3.2 35 131-165 23-57 (272)
467 KOG1571 Predicted E3 ubiquitin 39.5 9.7 0.00021 39.6 -0.0 46 555-605 302-347 (355)
468 KOG2543 Origin recognition com 39.2 40 0.00087 35.8 4.3 46 120-165 8-54 (438)
469 PRK10923 glnG nitrogen regulat 39.1 2.7E+02 0.0058 31.3 11.6 20 142-161 162-181 (469)
470 cd02037 MRP-like MRP (Multiple 39.1 28 0.00061 32.8 3.1 51 335-389 67-117 (169)
471 cd01523 RHOD_Lact_B Member of 39.1 42 0.00091 28.2 3.9 37 661-697 60-96 (100)
472 PF02456 Adeno_IVa2: Adenoviru 38.9 67 0.0014 33.2 5.6 27 336-362 197-223 (369)
473 PRK08769 DNA polymerase III su 38.8 36 0.00077 35.9 4.0 49 119-167 2-52 (319)
474 COG0470 HolB ATPase involved i 38.8 1.8E+02 0.0038 30.6 9.6 26 143-168 26-51 (325)
475 KOG0651 26S proteasome regulat 38.6 58 0.0013 33.7 5.2 24 142-165 167-190 (388)
476 PHA00673 acetyltransferase dom 38.5 41 0.00088 31.1 3.8 44 335-378 87-133 (154)
477 TIGR00959 ffh signal recogniti 38.3 51 0.0011 36.4 5.3 23 144-166 102-124 (428)
478 PF01745 IPT: Isopentenyl tran 38.2 35 0.00076 33.3 3.4 21 145-165 5-25 (233)
479 PTZ00062 glutaredoxin; Provisi 38.2 2.1E+02 0.0046 27.9 9.0 67 648-718 101-174 (204)
480 COG0593 DnaA ATPase involved i 37.7 1.7E+02 0.0037 32.0 8.9 53 335-387 175-235 (408)
481 TIGR00064 ftsY signal recognit 37.6 77 0.0017 32.6 6.2 23 145-167 76-98 (272)
482 TIGR01425 SRP54_euk signal rec 37.6 76 0.0016 35.0 6.4 22 145-166 104-125 (429)
483 PRK13235 nifH nitrogenase redu 37.5 26 0.00056 36.2 2.8 20 149-168 9-28 (274)
484 COG1066 Sms Predicted ATP-depe 37.4 1.2E+02 0.0027 32.8 7.5 46 145-210 97-142 (456)
485 TIGR02760 TraI_TIGR conjugativ 37.3 1.5E+02 0.0033 39.8 10.1 65 120-206 428-493 (1960)
486 KOG0989 Replication factor C, 37.2 49 0.0011 34.1 4.4 42 125-166 40-82 (346)
487 PF05290 Baculo_IE-1: Baculovi 37.0 29 0.00062 30.6 2.4 49 557-605 79-132 (140)
488 COG2804 PulE Type II secretory 36.9 43 0.00092 37.2 4.3 42 122-167 242-284 (500)
489 PF05970 PIF1: PIF1-like helic 36.9 72 0.0016 34.5 6.2 60 122-200 2-62 (364)
490 TIGR01281 DPOR_bchL light-inde 36.8 27 0.00059 35.8 2.8 19 149-167 8-26 (268)
491 COG0541 Ffh Signal recognition 36.5 47 0.001 36.0 4.4 69 151-241 110-188 (451)
492 smart00450 RHOD Rhodanese Homo 36.5 82 0.0018 25.8 5.4 39 659-697 53-92 (100)
493 KOG4367 Predicted Zn-finger pr 36.4 23 0.0005 37.4 2.1 33 558-590 4-36 (699)
494 KOG4175 Tryptophan synthase al 36.4 3.4E+02 0.0074 26.1 9.3 78 673-766 135-212 (268)
495 TIGR03877 thermo_KaiC_1 KaiC d 36.4 52 0.0011 33.1 4.7 24 143-166 23-46 (237)
496 TIGR00614 recQ_fam ATP-depende 36.3 2.8E+02 0.0062 31.1 11.1 61 663-724 52-112 (470)
497 PRK10037 cell division protein 36.1 29 0.00062 35.3 2.8 22 147-168 8-29 (250)
498 cd01528 RHOD_2 Member of the R 35.8 96 0.0021 26.0 5.6 37 661-697 57-94 (101)
499 PRK13766 Hef nuclease; Provisi 35.7 5.2E+02 0.011 31.2 14.0 114 641-761 38-161 (773)
500 COG3265 GntK Gluconate kinase 35.6 84 0.0018 28.8 5.2 31 191-224 70-100 (161)
No 1
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=5.8e-119 Score=902.33 Aligned_cols=623 Identities=57% Similarity=0.963 Sum_probs=575.1
Q ss_pred cccccccccccCCCCCCcccccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCC
Q 003502 100 DLDQQNAFMTETAEDPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASS 179 (815)
Q Consensus 100 ~~~~~~~~~~~~~~~p~~~~~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~ 179 (815)
+.+..++......++|.++..+|.|||++++.|+..++.+.+.|||||||||+|||+|+|++++...
T Consensus 163 dlde~~p~i~e~aeqP~dlii~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~------------- 229 (791)
T KOG1002|consen 163 DLDEANPVIAERAEQPDDLIIPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEV------------- 229 (791)
T ss_pred hhhhcCchhhhcccCcccceecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcc-------------
Confidence 5667788888899999999999999999999999999999999999999999999999999998732
Q ss_pred CCCCCccCCccEEEEcChHHHHHHHHHHHHhcCCCCcEEEEEeCCCCcCCcccccCCCEEEechhhhHHHhhhccCCCcc
Q 003502 180 SSSTGLLGIKATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQ 259 (815)
Q Consensus 180 ~~~~~~~~~~~~LIV~P~~ll~qW~~Ei~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~vvi~ty~~l~~~~~~~~~~~~~ 259 (815)
...|+|||||.-.+.||.+||..++. +.+++++|||.++....+.+..||+|+|||..+.+.|++.-..
T Consensus 230 -------~ra~tLVvaP~VAlmQW~nEI~~~T~-gslkv~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~G--- 298 (791)
T KOG1002|consen 230 -------DRAPTLVVAPTVALMQWKNEIERHTS-GSLKVYIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYG--- 298 (791)
T ss_pred -------ccCCeeEEccHHHHHHHHHHHHHhcc-CceEEEEEecccccCCHHHhhcCcEEEEecHHHHHHHHhcccc---
Confidence 23589999999999999999999998 7999999999999999999999999999999999987652100
Q ss_pred cccccCcccchhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceeeEE
Q 003502 260 KCQYCGKSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERI 339 (815)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v 339 (815)
+ ++| -......+.|+++.|.+|
T Consensus 299 --------f---------------------------rrK-----------------------ngv~ke~SlLHsi~~~Ri 320 (791)
T KOG1002|consen 299 --------F---------------------------RRK-----------------------NGVDKEKSLLHSIKFYRI 320 (791)
T ss_pred --------c---------------------------ccc-----------------------CCcccccchhhhceeeee
Confidence 0 000 012233678999999999
Q ss_pred EeecceeccCCCchHHHHHHhhhcCcEEEeeCCCCCCchhhHHHHHHHhccCCCCccccccccccccccC---CCCCCCC
Q 003502 340 ILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYS---SAECPNC 416 (815)
Q Consensus 340 IvDEaH~~kn~~s~~~~~~~~l~~~~r~~LTgTPi~n~~~el~~ll~~L~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 416 (815)
|+||||.||+..|+.++++..|.+.+||+|||||+||+..|||+|++||++.||++|+|..|++..+++. ...|+.|
T Consensus 321 IlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~c 400 (791)
T KOG1002|consen 321 ILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHCDHC 400 (791)
T ss_pred ehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998875 5789999
Q ss_pred CCCCcchhhhHhhhhcccccccCCCcchhHHHHHHHHHHhhHhhhhhccCCcccccCCCCeEEEEeecCCCHHHHHHHHH
Q 003502 417 PHNSVRHFCWWNRYVATPIQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYES 496 (815)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~lrr~k~~v~~~~~lp~~~~~~~~~~l~~~~~~~y~~ 496 (815)
.++..+|+.+|+.++..||+.++....|..+.. ..+.++..+|+||++-..+.++.|||+++.+....++.++.++|+.
T Consensus 401 ~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~-~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~D~YeS 479 (791)
T KOG1002|consen 401 SHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFN-NIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEKDLYES 479 (791)
T ss_pred cchhhhhhhhhcccccccchhhcccCchHHHHH-HHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhHHHHHHHH
Confidence 999999999999999999999999888888777 5578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHhcCcccccccccccccCCChhhhhhhhhhcCcccccCCCCccccC
Q 003502 497 LYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNC 576 (815)
Q Consensus 497 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (815)
++......|+.+.+.|.+.++++++|.+|.++||+++||+|+.++....+. +......+|.+|++++++++.++|
T Consensus 480 LY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~-----~enk~~~~C~lc~d~aed~i~s~C 554 (791)
T KOG1002|consen 480 LYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSANANLP-----DENKGEVECGLCHDPAEDYIESSC 554 (791)
T ss_pred HHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhhcCCC-----ccccCceeecccCChhhhhHhhhh
Confidence 999999999999999999999999999999999999999999887544433 333445789999999999999999
Q ss_pred CchhhhhhHhhhcccc---CCCCCCCCCCCcccccccCCCCCCCCccccccCccccchhhhhhccccCcchHHHHHHHHH
Q 003502 577 GHAFCKACLFDSSASK---FVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEI 653 (815)
Q Consensus 577 ~~~~c~~c~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~~l 653 (815)
.|.||+.|+..++.++ ....||.|.+++++|. +.....+..++++..++|++++.+++|..|+|+++|++.|
T Consensus 555 hH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl-----se~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl 629 (791)
T KOG1002|consen 555 HHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL-----SEPALEKTDLKGFKASSILNRINMDDWQSSTKIEALVEEL 629 (791)
T ss_pred hHHHHHHHHHHHHHhhhcccCCCCccccccccccc-----cchhhhhcchhhhhhHHHhhhcchhhhcchhHHHHHHHHH
Confidence 9999999998876543 3699999999999884 3344566788999999999999999999999999999999
Q ss_pred HHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCccccccccc
Q 003502 654 RFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVA 733 (815)
Q Consensus 654 ~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a 733 (815)
..+++++..-|.||||||+.|+++|...|.+.|+.++.+.|+|++..|...|+.|.++++++|||+|.++||..|||+.|
T Consensus 630 ~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteA 709 (791)
T KOG1002|consen 630 YFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEA 709 (791)
T ss_pred HHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeCCcHHHHHHHHHHHHHHHhhhhcCCCcccccCCCHHHHHhhh
Q 003502 734 SHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFGKLTEADMRFLF 813 (815)
Q Consensus 734 ~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~TiEe~i~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~l~ 813 (815)
++|+++||||||+++.||.+|+|||||.++|.|.+|+.++|||++|+++|++|..+|++++|++++++++++++||++||
T Consensus 710 SqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qde~Ai~kLt~eDmqfLF 789 (791)
T KOG1002|consen 710 SQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQDEEAISKLTEEDMQFLF 789 (791)
T ss_pred ceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCcHHHHHhcCHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 003502 814 VT 815 (815)
Q Consensus 814 ~~ 815 (815)
.+
T Consensus 790 ~n 791 (791)
T KOG1002|consen 790 NN 791 (791)
T ss_pred cC
Confidence 75
No 2
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=4.4e-94 Score=763.74 Aligned_cols=528 Identities=25% Similarity=0.387 Sum_probs=431.0
Q ss_pred ccCCCccchhhhcccccccCCCCcchHHHHHHHHHhhhcccccCcccccccccccccCCCCCCcccccchHHHHHHHHHH
Q 003502 54 KGKKNESNKKKKTRGKKRQRTGSSLLWEIWEEEHERWIDMHEKDDVDLDQQNAFMTETAEDPPDLITPLLRYQKEWLAWA 133 (815)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~yQ~~~~~~~ 133 (815)
.+++++..++.++.+|....+.. .+..+..++...+...........+..|..++..|+|||++||+||
T Consensus 149 ~Dd~d~~~~~~r~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~vPg~I~~~Lf~yQreGV~WL 217 (923)
T KOG0387|consen 149 IDDGDEKVYRARLDKWVKYRKLS-----------CESKGLDEELEDHSEISGKKLEGGFKVPGFIWSKLFPYQREGVQWL 217 (923)
T ss_pred cccCchHHHHHHHHHhhhcccch-----------hhhcCcccccccccccccccccccccccHHHHHHhhHHHHHHHHHH
Confidence 56666777777777665544320 1111111222233333344445568889999999999999999998
Q ss_pred HHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHHHHHHHHHHHHhcCC
Q 003502 134 LKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRFTSV 213 (815)
Q Consensus 134 ~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~ll~qW~~Ei~~~~~~ 213 (815)
+....+. .|||||||||||||+|+|+|++.++..+. -.+|+|||||++++.||++||++|+|
T Consensus 218 ~~L~~q~-~GGILgDeMGLGKTIQiisFLaaL~~S~k----------------~~~paLIVCP~Tii~qW~~E~~~w~p- 279 (923)
T KOG0387|consen 218 WELYCQR-AGGILGDEMGLGKTIQIISFLAALHHSGK----------------LTKPALIVCPATIIHQWMKEFQTWWP- 279 (923)
T ss_pred HHHHhcc-CCCeecccccCccchhHHHHHHHHhhccc----------------ccCceEEEccHHHHHHHHHHHHHhCc-
Confidence 8776665 69999999999999999999999986532 23799999999999999999999999
Q ss_pred CCcEEEEEeCCCCcCCc---------------ccccCCCEEEechhhhHHHhhhccCCCcccccccCcccchhhhhhhhh
Q 003502 214 GSTKVLIYHGSNRERSA---------------KQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVVHLK 278 (815)
Q Consensus 214 ~~~~v~~~~g~~~~~~~---------------~~~~~~~vvi~ty~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (815)
.++|.++|+....... ....+..|+||||+.++..
T Consensus 280 -~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~----------------------------- 329 (923)
T KOG0387|consen 280 -PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ----------------------------- 329 (923)
T ss_pred -ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc-----------------------------
Confidence 6899999987653111 1124567999999998653
Q ss_pred hccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceeeEEEeecceeccCCCchHHHHH
Q 003502 279 YFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNTAKAV 358 (815)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~~~~~~ 358 (815)
...+..+.|++||+||+|+|||++|+++.+|
T Consensus 330 -------------------------------------------------~d~l~~~~W~y~ILDEGH~IrNpns~islac 360 (923)
T KOG0387|consen 330 -------------------------------------------------GDDLLGILWDYVILDEGHRIRNPNSKISLAC 360 (923)
T ss_pred -------------------------------------------------CcccccccccEEEecCcccccCCccHHHHHH
Confidence 2347888999999999999999999999999
Q ss_pred HhhhcCcEEEeeCCCCCCchhhHHHHHHHhccCCCCccccccccccccccCCCCCCCCCCCCcchhhhHhhhhccccccc
Q 003502 359 LALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTH 438 (815)
Q Consensus 359 ~~l~~~~r~~LTgTPi~n~~~el~~ll~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (815)
+.+++.+|++|||||+||++.|||+|++|+.|..++ ....|...|..||..+
T Consensus 361 kki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lg----------------------------t~~~F~~~f~~pI~~G 412 (923)
T KOG0387|consen 361 KKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLG----------------------------TLPVFQQNFEHPINRG 412 (923)
T ss_pred HhccccceEEeeCccccchHHHHHHHhhhccCCccc----------------------------chHHHHhhhhhheecc
Confidence 999999999999999999999999999999876654 4456899999999999
Q ss_pred CCCcchhHHH------HHHHHHHhhHhhhhhccCCcccccCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003502 439 GNSYGGRRAM------ILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAG 512 (815)
Q Consensus 439 ~~~~~~~~~~------~~~~~~ll~~~~lrr~k~~v~~~~~lp~~~~~~~~~~l~~~~~~~y~~l~~~~~~~~~~~~~~~ 512 (815)
++.++..... ...++.+++||+|||+|++|.. +.||.+.+.++.|.|++.|+.+|+.+.+.....
T Consensus 413 gyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~-~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~-------- 483 (923)
T KOG0387|consen 413 GYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKG-LKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVN-------- 483 (923)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh-ccCCCccceEEEEeccHHHHHHHHHHhhhHHHH--------
Confidence 9988643322 3356789999999999999977 669999999999999999999999887643321
Q ss_pred ccccchHHHHHHHHHHHHHhcCcccccccccccccCCChhhhhhhhhhcCcccccCCCCccccCCchhhhhhHhhhcccc
Q 003502 513 TVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASK 592 (815)
Q Consensus 513 ~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~ 592 (815)
.+.++..+.+..+..||++||||.++.........
T Consensus 484 ~i~ng~~~~l~Gi~iLrkICnHPdll~~~~~~~~~--------------------------------------------- 518 (923)
T KOG0387|consen 484 KILNGKRNCLSGIDILRKICNHPDLLDRRDEDEKQ--------------------------------------------- 518 (923)
T ss_pred HHHcCCccceechHHHHhhcCCcccccCccccccc---------------------------------------------
Confidence 23344566788899999999999988422100000
Q ss_pred CCCCCCCCCCCcccccccCCCCCCCCccccccCccccchhhhhhccccCcchHHHHHHHHHHHHHhcCCCceEEEEccCh
Q 003502 593 FVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFT 672 (815)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~ 672 (815)
.. -..+++..|.||..+..+|..+.. .++|||+|+|.+
T Consensus 519 ------------------~~----------------------D~~g~~k~sGKm~vl~~ll~~W~k--qg~rvllFsqs~ 556 (923)
T KOG0387|consen 519 ------------------GP----------------------DYEGDPKRSGKMKVLAKLLKDWKK--QGDRVLLFSQSR 556 (923)
T ss_pred ------------------CC----------------------CcCCChhhcchHHHHHHHHHHHhh--CCCEEEEehhHH
Confidence 00 000334569999999999998855 458999999999
Q ss_pred hHHHHHHHHHH-hCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEeCCCCCcchHHHH
Q 003502 673 SFLDLINYSLH-KSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQA 751 (815)
Q Consensus 673 ~~~~~l~~~L~-~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~~d~~wnp~~~~Qa 751 (815)
.|+++|+.+|. ..|+.|++++|+++...|+.+|++||++..+.|||++|++||.|+||++||+||+|||+|||+++.||
T Consensus 557 ~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QA 636 (923)
T KOG0387|consen 557 QMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQA 636 (923)
T ss_pred HHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHH
Confidence 99999999999 68999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhcCCCCCcEEEEEEEeCCcHHHHHHHHHHHHHHHhhhhcCCCcccccCCCHHHHHhhhc
Q 003502 752 QDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFGKLTEADMRFLFV 814 (815)
Q Consensus 752 igR~~R~GQ~~~V~vy~l~~~~TiEe~i~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 814 (815)
..||||+||++.|.||||++.|||||+||++|.-|..+.+.++.+.. ...-....++.+||.
T Consensus 637 reRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~Kq~Ltn~il~~p~-q~RfF~~~dl~dLFs 698 (923)
T KOG0387|consen 637 RERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNRILKNPE-QRRFFKGNDLHDLFS 698 (923)
T ss_pred HHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHHHHHHHHHhcCHH-HhhhcccccHHHHhC
Confidence 99999999999999999999999999999999999999999986543 334456667777774
No 3
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=5e-90 Score=728.52 Aligned_cols=458 Identities=33% Similarity=0.523 Sum_probs=392.6
Q ss_pred CCCccc-ccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEE
Q 003502 114 DPPDLI-TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATL 192 (815)
Q Consensus 114 ~p~~~~-~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 192 (815)
.|..+. ..|+|||++|++|+...+..+. +||||||||||||+|+|+++.+++...+. .+|+|
T Consensus 159 sP~~v~~g~lr~YQveGlnWLi~l~engi-ngILaDEMGLGKTlQtIs~l~yl~~~~~~----------------~GPfL 221 (971)
T KOG0385|consen 159 SPSYVKGGELRDYQLEGLNWLISLYENGI-NGILADEMGLGKTLQTISLLGYLKGRKGI----------------PGPFL 221 (971)
T ss_pred CchhhcCCccchhhhccHHHHHHHHhcCc-ccEeehhcccchHHHHHHHHHHHHHhcCC----------------CCCeE
Confidence 466666 7899999999999999999886 89999999999999999999998875543 27999
Q ss_pred EEcChHHHHHHHHHHHHhcCCCCcEEEEEeCCCCcCCc-----ccccCCCEEEechhhhHHHhhhccCCCcccccccCcc
Q 003502 193 VICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSA-----KQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKS 267 (815)
Q Consensus 193 IV~P~~ll~qW~~Ei~~~~~~~~~~v~~~~g~~~~~~~-----~~~~~~~vvi~ty~~l~~~~~~~~~~~~~~~~~~~~~ 267 (815)
|+||.+++.+|.+||.+|+| .+++++|+|+...+.. -.-..++|+||||+++-++
T Consensus 222 Vi~P~StL~NW~~Ef~rf~P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d------------------ 281 (971)
T KOG0385|consen 222 VIAPKSTLDNWMNEFKRFTP--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD------------------ 281 (971)
T ss_pred EEeeHhhHHHHHHHHHHhCC--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh------------------
Confidence 99999999999999999999 8999999999765432 1124899999999998765
Q ss_pred cchhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceeeEEEeecceec
Q 003502 268 FYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFI 347 (815)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~ 347 (815)
.+.|..+.|.++||||||+|
T Consensus 282 ------------------------------------------------------------k~~lk~~~W~ylvIDEaHRi 301 (971)
T KOG0385|consen 282 ------------------------------------------------------------KSFLKKFNWRYLVIDEAHRI 301 (971)
T ss_pred ------------------------------------------------------------HHHHhcCCceEEEechhhhh
Confidence 24488889999999999999
Q ss_pred cCCCchHHHHHHhhhcCcEEEeeCCCCCCchhhHHHHHHHhccCCCCccccccccccccccCCCCCCCCCCCCcchhhhH
Q 003502 348 KDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWW 427 (815)
Q Consensus 348 kn~~s~~~~~~~~l~~~~r~~LTgTPi~n~~~el~~ll~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (815)
||.+|..++.++.+.+.+|++|||||+||++.|||+||+||-|+.|++. ..|..|
T Consensus 302 KN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~-------------------------e~F~sw 356 (971)
T KOG0385|consen 302 KNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSA-------------------------EDFDSW 356 (971)
T ss_pred cchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCH-------------------------HHHHHH
Confidence 9999999999999999999999999999999999999999999888542 333333
Q ss_pred hhhhcccccccCCCcchhHHHHHHHHHHhhHhhhhhccCCcccccCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHHHHH
Q 003502 428 NRYVATPIQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNT 507 (815)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~lrr~k~~v~~~~~lp~~~~~~~~~~l~~~~~~~y~~l~~~~~~~~~~ 507 (815)
|... ...+....+..++.+++||++||.|.+|... +||+.+..+++.|+..|+++|..+.......+..
T Consensus 357 ---F~~~------~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~s--LppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~ 425 (971)
T KOG0385|consen 357 ---FDFT------NCEGDQELVSRLHKVLRPFLLRRIKSDVEKS--LPPKKELIIYVGMSSMQKKWYKAILMKDLDALNG 425 (971)
T ss_pred ---Hccc------ccccCHHHHHHHHhhhhHHHHHHHHHhHhhc--CCCcceeeEeccchHHHHHHHHHHHHhcchhhcc
Confidence 3222 1122334777889999999999999999877 9999999999999999999999998876665433
Q ss_pred HHHhcccccchHHHHHHHHHHHHHhcCcccccccccccccCCChhhhhhhhhhcCcccccCCCCccccCCchhhhhhHhh
Q 003502 508 YVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFD 587 (815)
Q Consensus 508 ~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~ 587 (815)
. .......+.+.++.||++|+||+|+...+.... -..
T Consensus 426 ~-----~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~p----ytt---------------------------------- 462 (971)
T KOG0385|consen 426 E-----GKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPP----YTT---------------------------------- 462 (971)
T ss_pred c-----ccchhhHHHHHHHHHHHhcCCccccCCCCCCCC----CCc----------------------------------
Confidence 2 111357789999999999999999954211100 000
Q ss_pred hccccCCCCCCCCCCCcccccccCCCCCCCCccccccCccccchhhhhhccccCcchHHHHHHHHHHHHHhcCCCceEEE
Q 003502 588 SSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIV 667 (815)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~~l~~~~~~~~~~KvII 667 (815)
....+..|.|+..|-.+|..+.+ .|+||||
T Consensus 463 ------------------------------------------------dehLv~nSGKm~vLDkLL~~Lk~--~GhRVLI 492 (971)
T KOG0385|consen 463 ------------------------------------------------DEHLVTNSGKMLVLDKLLPKLKE--QGHRVLI 492 (971)
T ss_pred ------------------------------------------------chHHHhcCcceehHHHHHHHHHh--CCCeEEE
Confidence 00112348899999999998855 4599999
Q ss_pred EccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCC-CCceEEEEecCCCcccccccccCEEEEeCCCCCcc
Q 003502 668 FSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTED-PDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPA 746 (815)
Q Consensus 668 Fs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~-~~~~vlL~st~~g~~GlNL~~a~~vI~~d~~wnp~ 746 (815)
|||++.|+|+|++++...|+.|++|+|+++-++|...|+.|+.. +..+|||+||+|||.||||+.|++||+||.+|||.
T Consensus 493 FSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ 572 (971)
T KOG0385|consen 493 FSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQ 572 (971)
T ss_pred eHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCch
Confidence 99999999999999999999999999999999999999999984 47899999999999999999999999999999999
Q ss_pred hHHHHhHhhhcCCCCCcEEEEEEEeCCcHHHHHHHHHHHHHHHhhhhcCCC
Q 003502 747 VEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGS 797 (815)
Q Consensus 747 ~~~QaigR~~R~GQ~~~V~vy~l~~~~TiEe~i~~~~~~K~~~~~~~~~~~ 797 (815)
.+.||.+|||||||+++|+||||++.+||||+|+++...|..+-+-+++++
T Consensus 573 ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld~~VIq~g 623 (971)
T KOG0385|consen 573 VDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLDKLVIQQG 623 (971)
T ss_pred hhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhchhhhhhccC
Confidence 999999999999999999999999999999999999999999999888776
No 4
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=9.8e-84 Score=683.63 Aligned_cols=505 Identities=29% Similarity=0.445 Sum_probs=383.5
Q ss_pred ccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHH
Q 003502 120 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA 199 (815)
Q Consensus 120 ~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~l 199 (815)
..|.|||+.|++|+.-...... .||||||||||||+|+||+++++.+.+.. +|.|||||+++
T Consensus 398 i~LkdYQlvGvNWL~Llyk~~l-~gILADEMGLGKTiQvIaFlayLkq~g~~-----------------gpHLVVvPsST 459 (941)
T KOG0389|consen 398 IQLKDYQLVGVNWLLLLYKKKL-NGILADEMGLGKTIQVIAFLAYLKQIGNP-----------------GPHLVVVPSST 459 (941)
T ss_pred CcccchhhhhHHHHHHHHHccc-cceehhhccCcchhHHHHHHHHHHHcCCC-----------------CCcEEEecchh
Confidence 4599999999999877766665 77999999999999999999999987653 78899999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEeCCCCcCCc------ccccCCCEEEechhhhHHHhhhccCCCcccccccCcccchhhh
Q 003502 200 VTQWVSEINRFTSVGSTKVLIYHGSNRERSA------KQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKL 273 (815)
Q Consensus 200 l~qW~~Ei~~~~~~~~~~v~~~~g~~~~~~~------~~~~~~~vvi~ty~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (815)
+.+|.+||++|+| .++|..|+|+..++.. ..-..|||++|||+.+...
T Consensus 460 leNWlrEf~kwCP--sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~------------------------ 513 (941)
T KOG0389|consen 460 LENWLREFAKWCP--SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASS------------------------ 513 (941)
T ss_pred HHHHHHHHHHhCC--ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCC------------------------
Confidence 9999999999999 8999999998754422 1224899999999987432
Q ss_pred hhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceeeEEEeecceeccCCCch
Q 003502 274 VVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSN 353 (815)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~ 353 (815)
++++++|...+|++||.||+|.+||..|.
T Consensus 514 ---------------------------------------------------kdDRsflk~~~~n~viyDEgHmLKN~~Se 542 (941)
T KOG0389|consen 514 ---------------------------------------------------KDDRSFLKNQKFNYVIYDEGHMLKNRTSE 542 (941)
T ss_pred ---------------------------------------------------hHHHHHHHhccccEEEecchhhhhccchH
Confidence 22245688899999999999999999999
Q ss_pred HHHHHHhhhcCcEEEeeCCCCCCchhhHHHHHHHhccCCCCccccccccccccccCCCCCCCCCCCCcchhhhHhhhhcc
Q 003502 354 TAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVAT 433 (815)
Q Consensus 354 ~~~~~~~l~~~~r~~LTgTPi~n~~~el~~ll~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (815)
+++.+..+++..|++|||||+||++.||++||.|+-|..|.... . .+...|..
T Consensus 543 Ry~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~------------------------~---dl~~if~~ 595 (941)
T KOG0389|consen 543 RYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSM------------------------E---DLDVIFKA 595 (941)
T ss_pred HHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccc------------------------h---HHHHHHhc
Confidence 99999999999999999999999999999999999988775431 1 11222211
Q ss_pred cccccCCCc--chhHHHHHHHHHHhhHhhhhhccCCcccccCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 003502 434 PIQTHGNSY--GGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQA 511 (815)
Q Consensus 434 ~~~~~~~~~--~~~~~~~~~~~~ll~~~~lrr~k~~v~~~~~lp~~~~~~~~~~l~~~~~~~y~~l~~~~~~~~~~~~~~ 511 (815)
.-...+... .-....+.+...++.||+|||.|.+|... |||++.++.+|+|+..|+.+|..+.+............
T Consensus 596 k~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K~qVL~~--LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~n 673 (941)
T KOG0389|consen 596 KKTSDGDIENALLSQERISRAKTIMKPFILRRLKSQVLKQ--LPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKN 673 (941)
T ss_pred cCCccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCccceeEeeecchHHHHHHHHHHHHHhhhccccccc
Confidence 111100000 01122344456799999999999999887 99999999999999999999999887763322221111
Q ss_pred cccccchHHHHHHHHHHHHHhcCcccccccccccccCCChhhhhhhhhhcCccc--ccCCCCccccC--CchhhhhhHhh
Q 003502 512 GTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCN--DLADDPVVTNC--GHAFCKACLFD 587 (815)
Q Consensus 512 ~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~c~~c~~~ 587 (815)
.... . -..++.||++++||.|+...-.+................|. |. ...++..++.- .|..|...-
T Consensus 674 -s~~~--~--~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~-~n~qyIfEDm~~msDfelHqLc~~f~-- 745 (941)
T KOG0389|consen 674 -SELK--S--GNVLMQLRKAANHPLLFRSIYTDEKLRKMAKRILNEPAYKK-ANEQYIFEDMEVMSDFELHQLCCQFR-- 745 (941)
T ss_pred -cccc--c--chHHHHHHHHhcChhHHHHhccHHHHHHHHHHHhCchhhhh-cCHHHHHHHHHhhhHHHHHHHHHhcC--
Confidence 0011 1 45899999999999987422111100000000000000011 10 01111111111 122221100
Q ss_pred hccccCCCCCCCCCCCcccccccCCCCCCCCccccccCccccchhhhhhccccCcchHHHHHHHHHHHHHhcCCCceEEE
Q 003502 588 SSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIV 667 (815)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~~l~~~~~~~~~~KvII 667 (815)
|-..+. +....|-.|+|+..|..+|..+...+ +||||
T Consensus 746 ------------~~~~f~-----------------------------L~d~~~mdSgK~r~L~~LLp~~k~~G--~RVLi 782 (941)
T KOG0389|consen 746 ------------HLSKFQ-----------------------------LKDDLWMDSGKCRKLKELLPKIKKKG--DRVLI 782 (941)
T ss_pred ------------CCcccc-----------------------------cCCchhhhhhhHhHHHHHHHHHhhcC--CEEEE
Confidence 000111 11233456999999999999996654 99999
Q ss_pred EccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEeCCCCCcch
Q 003502 668 FSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAV 747 (815)
Q Consensus 668 Fs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~~d~~wnp~~ 747 (815)
||||+.|+|+|+..|...|+.|++++|+|....|+.+|+.|+.+.+++|||+||+|||.||||++||+||++|.++||..
T Consensus 783 FSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~d 862 (941)
T KOG0389|consen 783 FSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYD 862 (941)
T ss_pred eeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhhhcCCCCCcEEEEEEEeCCcHHHHHHHHHHHHHHHhhhhcCCCcc
Q 003502 748 EQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSAD 799 (815)
Q Consensus 748 ~~QaigR~~R~GQ~~~V~vy~l~~~~TiEe~i~~~~~~K~~~~~~~~~~~~~ 799 (815)
+.||.+|+||+||+|+|+||+|++++||||.|+++...|..+-..+.++...
T Consensus 863 D~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~k~ 914 (941)
T KOG0389|consen 863 DKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDGKG 914 (941)
T ss_pred cchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCccc
Confidence 9999999999999999999999999999999999999998887766655443
No 5
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=2e-82 Score=698.25 Aligned_cols=510 Identities=28% Similarity=0.464 Sum_probs=419.3
Q ss_pred cccCCCCCCcccccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccC
Q 003502 108 MTETAEDPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLG 187 (815)
Q Consensus 108 ~~~~~~~p~~~~~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (815)
..+.+..|..|...||.||.+|++|+.....-. -.|||||+||||||+|+|++++..+..+.. ....-.
T Consensus 962 ki~~y~Ip~pI~a~LRkYQqEGVnWLaFLnky~-LHGILcDDMGLGKTLQticilAsd~y~r~s----------~~~e~~ 1030 (1549)
T KOG0392|consen 962 KIPEYKIPVPISAKLRKYQQEGVNWLAFLNKYK-LHGILCDDMGLGKTLQTICILASDHYKRRS----------ESSEFN 1030 (1549)
T ss_pred cCCccccccchhHHHHHHHHhccHHHHHHHHhc-ccceeeccccccHHHHHHHHHHHHHHhhcc----------cchhhc
Confidence 345677788899999999999999965543334 489999999999999999999987765411 111112
Q ss_pred CccEEEEcChHHHHHHHHHHHHhcCCCCcEEEEEeCCCCcC--CcccccCCCEEEechhhhHHHhhhccCCCcccccccC
Q 003502 188 IKATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRER--SAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCG 265 (815)
Q Consensus 188 ~~~~LIV~P~~ll~qW~~Ei~~~~~~~~~~v~~~~g~~~~~--~~~~~~~~~vvi~ty~~l~~~~~~~~~~~~~~~~~~~ 265 (815)
..|.|||||++|..+|+.|+.+|+| .++|+.|.|....+ ...+..+++|+|++|+.+++++..
T Consensus 1031 ~~PSLIVCPsTLtGHW~~E~~kf~p--fL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~------------- 1095 (1549)
T KOG0392|consen 1031 RLPSLIVCPSTLTGHWKSEVKKFFP--FLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY------------- 1095 (1549)
T ss_pred cCCeEEECCchhhhHHHHHHHHhcc--hhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH-------------
Confidence 3589999999999999999999999 69999999976544 334567889999999999998754
Q ss_pred cccchhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceeeEEEeecce
Q 003502 266 KSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAH 345 (815)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIvDEaH 345 (815)
|..+.|+++|+||+|
T Consensus 1096 -----------------------------------------------------------------l~~~~wNYcVLDEGH 1110 (1549)
T KOG0392|consen 1096 -----------------------------------------------------------------LIKIDWNYCVLDEGH 1110 (1549)
T ss_pred -----------------------------------------------------------------HHhcccceEEecCcc
Confidence 677789999999999
Q ss_pred eccCCCchHHHHHHhhhcCcEEEeeCCCCCCchhhHHHHHHHhccCCCCccccccccccccccCCCCCCCCCCCCcchhh
Q 003502 346 FIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFC 425 (815)
Q Consensus 346 ~~kn~~s~~~~~~~~l~~~~r~~LTgTPi~n~~~el~~ll~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (815)
-|||..++.+++++.|.+.+|++||||||||++.|||+|++||-|+..+ .-.
T Consensus 1111 VikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLG----------------------------tEK 1162 (1549)
T KOG0392|consen 1111 VIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLG----------------------------TEK 1162 (1549)
T ss_pred eecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccC----------------------------cHH
Confidence 9999999999999999999999999999999999999999999865544 445
Q ss_pred hHhhhhcccccccCCCcchhH------HHHHHHHHHhhHhhhhhccCCcccccCCCCeEEEEeecCCCHHHHHHHHHHHH
Q 003502 426 WWNRYVATPIQTHGNSYGGRR------AMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYS 499 (815)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ll~~~~lrr~k~~v~~~~~lp~~~~~~~~~~l~~~~~~~y~~l~~ 499 (815)
.|...|..||...+......+ .+...+++..-|||+||+|+||..+ |||++++-.+|+|+|.|+++|+.+..
T Consensus 1163 qFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~D--LPpKIIQDyyCeLs~lQ~kLY~df~~ 1240 (1549)
T KOG0392|consen 1163 QFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLKD--LPPKIIQDYYCELSPLQKKLYRDFVK 1240 (1549)
T ss_pred HHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh--CChhhhhheeeccCHHHHHHHHHHHH
Confidence 689999999987766543222 2234556777899999999999988 99999999999999999999999988
Q ss_pred HHHHHHHHHHHhcccccc--hHHHHHHHHHHHHHhcCcccccccccccccCCChhhhhhhhhhcCcccccCCCCccccCC
Q 003502 500 ESQAQFNTYVQAGTVMNN--YAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCG 577 (815)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~--~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (815)
+...........+....+ ..++|..+..+|+.|+||.++.......+ ..+.. .|+
T Consensus 1241 ~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~l--------a~i~~---------------~l~ 1297 (1549)
T KOG0392|consen 1241 KAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPDL--------AAIVS---------------HLA 1297 (1549)
T ss_pred HhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcchH--------HHHHH---------------HHH
Confidence 733333322223322222 78999999999999999999854311110 00000 000
Q ss_pred chhhhhhHhhhccccCCCCCCCCCCCcccccccCCCCCCCCccccccCccccchhhhhhccccCcchHHHHHHHHHHHHH
Q 003502 578 HAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMV 657 (815)
Q Consensus 578 ~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~~l~~~~ 657 (815)
| ....+.+...|+|+.+|.++|..+-
T Consensus 1298 ~------------------------------------------------------~~~~LHdi~hspKl~AL~qLL~eCG 1323 (1549)
T KOG0392|consen 1298 H------------------------------------------------------FNSSLHDIQHSPKLSALKQLLSECG 1323 (1549)
T ss_pred H------------------------------------------------------hhhhHHHhhhchhHHHHHHHHHHhC
Confidence 0 0011233467999999999998863
Q ss_pred hc---C---------CCceEEEEccChhHHHHHHHHHHhC---CCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 003502 658 ER---D---------GSAKGIVFSQFTSFLDLINYSLHKS---GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 722 (815)
Q Consensus 658 ~~---~---------~~~KvIIFs~~~~~~~~l~~~L~~~---g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~ 722 (815)
-. . .+||+|||||+..|+|++++-|-+. .+.|.+++|++++.+|++++.+||++|.+.|+|++|.
T Consensus 1324 ig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTTh 1403 (1549)
T KOG0392|consen 1324 IGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTH 1403 (1549)
T ss_pred CCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeee
Confidence 21 1 4689999999999999999888664 4668899999999999999999999999999999999
Q ss_pred CCcccccccccCEEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeCCcHHHHHHHHHHHHHHHhhhhcCCCccccc
Q 003502 723 AGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFG 802 (815)
Q Consensus 723 ~g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~TiEe~i~~~~~~K~~~~~~~~~~~~~~~~ 802 (815)
+||.||||++|++|||++-+|||+.+.||++|||||||++.|.||||+++||+||+|+.+|.-|..+.+.+++..-..+.
T Consensus 1404 VGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqNasl~ 1483 (1549)
T KOG0392|consen 1404 VGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQNASLE 1483 (1549)
T ss_pred ccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998878888
Q ss_pred CCCHHHHHhhhcC
Q 003502 803 KLTEADMRFLFVT 815 (815)
Q Consensus 803 ~~~~~~~~~l~~~ 815 (815)
.+...++..||.+
T Consensus 1484 tM~TdqLLdlF~~ 1496 (1549)
T KOG0392|consen 1484 TMDTDQLLDLFTV 1496 (1549)
T ss_pred ccCHHHHHHHhcc
Confidence 9999999999973
No 6
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=3.7e-81 Score=721.89 Aligned_cols=474 Identities=29% Similarity=0.487 Sum_probs=391.1
Q ss_pred CCCCcccccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEE
Q 003502 113 EDPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATL 192 (815)
Q Consensus 113 ~~p~~~~~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 192 (815)
..|..+...|+|||++|++||+..+..+ .|||||||||||||+|+|+++.+++..... .+|+|
T Consensus 161 ~qP~~i~~~Lr~YQleGlnWLi~l~~~g-~gGILADEMGLGKTlQaIalL~~L~~~~~~----------------~gp~L 223 (1033)
T PLN03142 161 VQPSCIKGKMRDYQLAGLNWLIRLYENG-INGILADEMGLGKTLQTISLLGYLHEYRGI----------------TGPHM 223 (1033)
T ss_pred cCChHhccchHHHHHHHHHHHHHHHhcC-CCEEEEeCCCccHHHHHHHHHHHHHHhcCC----------------CCCEE
Confidence 3577778899999999999999877665 589999999999999999999887654332 36999
Q ss_pred EEcChHHHHHHHHHHHHhcCCCCcEEEEEeCCCCcCCc-----ccccCCCEEEechhhhHHHhhhccCCCcccccccCcc
Q 003502 193 VICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSA-----KQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKS 267 (815)
Q Consensus 193 IV~P~~ll~qW~~Ei~~~~~~~~~~v~~~~g~~~~~~~-----~~~~~~~vvi~ty~~l~~~~~~~~~~~~~~~~~~~~~ 267 (815)
||||++++.||.+||.+|+| .+++++|+|....+.. .....++|+||||+++....
T Consensus 224 IVvP~SlL~nW~~Ei~kw~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~----------------- 284 (1033)
T PLN03142 224 VVAPKSTLGNWMNEIRRFCP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEK----------------- 284 (1033)
T ss_pred EEeChHHHHHHHHHHHHHCC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHH-----------------
Confidence 99999999999999999998 6889999997654321 11256899999999987652
Q ss_pred cchhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceeeEEEeecceec
Q 003502 268 FYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFI 347 (815)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~ 347 (815)
..|..+.|++|||||||++
T Consensus 285 -------------------------------------------------------------~~L~k~~W~~VIvDEAHrI 303 (1033)
T PLN03142 285 -------------------------------------------------------------TALKRFSWRYIIIDEAHRI 303 (1033)
T ss_pred -------------------------------------------------------------HHhccCCCCEEEEcCcccc
Confidence 2266778999999999999
Q ss_pred cCCCchHHHHHHhhhcCcEEEeeCCCCCCchhhHHHHHHHhccCCCCccccccccccccccCCCCCCCCCCCCcchhhhH
Q 003502 348 KDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWW 427 (815)
Q Consensus 348 kn~~s~~~~~~~~l~~~~r~~LTgTPi~n~~~el~~ll~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (815)
||..|..++++..+.+.+||+|||||++|++.|||+|++||.|..|++. ..|
T Consensus 304 KN~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~----------------------------~~F 355 (1033)
T PLN03142 304 KNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSA----------------------------ETF 355 (1033)
T ss_pred CCHHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCH----------------------------HHH
Confidence 9999999999999999999999999999999999999999998877543 223
Q ss_pred hhhhcccccccCCCcchhHHHHHHHHHHhhHhhhhhccCCcccccCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHHHHH
Q 003502 428 NRYVATPIQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNT 507 (815)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~lrr~k~~v~~~~~lp~~~~~~~~~~l~~~~~~~y~~l~~~~~~~~~~ 507 (815)
...|.... ..........++.+++++++||++.+|... +|++.+.++.+.|++.|+.+|..+.......+..
T Consensus 356 ~~~f~~~~------~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~--LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~ 427 (1033)
T PLN03142 356 DEWFQISG------ENDQQEVVQQLHKVLRPFLLRRLKSDVEKG--LPPKKETILKVGMSQMQKQYYKALLQKDLDVVNA 427 (1033)
T ss_pred HHHHcccc------ccchHHHHHHHHHHhhHHHhhhhHHHHhhh--CCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhc
Confidence 44443311 112334456678899999999999998765 9999999999999999999999998765544322
Q ss_pred HHHhcccccchHHHHHHHHHHHHHhcCcccccccccccccCCChhhhhhhhhhcCcccccCCCCccccCCchhhhhhHhh
Q 003502 508 YVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFD 587 (815)
Q Consensus 508 ~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~ 587 (815)
......++..++.||++|+||+++........ . .
T Consensus 428 -------g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~-------------------------~-~------------- 461 (1033)
T PLN03142 428 -------GGERKRLLNIAMQLRKCCNHPYLFQGAEPGPP-------------------------Y-T------------- 461 (1033)
T ss_pred -------cccHHHHHHHHHHHHHHhCCHHhhhcccccCc-------------------------c-c-------------
Confidence 12345678899999999999998732110000 0 0
Q ss_pred hccccCCCCCCCCCCCcccccccCCCCCCCCccccccCccccchhhhhhccccCcchHHHHHHHHHHHHHhcCCCceEEE
Q 003502 588 SSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIV 667 (815)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~~l~~~~~~~~~~KvII 667 (815)
.....+..|+|+..|..+|..+.. .++||||
T Consensus 462 -----------------------------------------------~~e~lie~SgKl~lLdkLL~~Lk~--~g~KVLI 492 (1033)
T PLN03142 462 -----------------------------------------------TGEHLVENSGKMVLLDKLLPKLKE--RDSRVLI 492 (1033)
T ss_pred -----------------------------------------------chhHHhhhhhHHHHHHHHHHHHHh--cCCeEEe
Confidence 000112348899999999988855 4689999
Q ss_pred EccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCC-CCceEEEEecCCCcccccccccCEEEEeCCCCCcc
Q 003502 668 FSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTED-PDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPA 746 (815)
Q Consensus 668 Fs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~-~~~~vlL~st~~g~~GlNL~~a~~vI~~d~~wnp~ 746 (815)
||||+.++++|+++|...|+++++|+|+++..+|+++|++|+++ +...|||+||++||+||||+.|++||+||++|||.
T Consensus 493 FSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~ 572 (1033)
T PLN03142 493 FSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQ 572 (1033)
T ss_pred ehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChH
Confidence 99999999999999999999999999999999999999999874 45679999999999999999999999999999999
Q ss_pred hHHHHhHhhhcCCCCCcEEEEEEEeCCcHHHHHHHHHHHHHHHhhhhcCCCc-ccccCCCHHHHHhhhc
Q 003502 747 VEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSA-DAFGKLTEADMRFLFV 814 (815)
Q Consensus 747 ~~~QaigR~~R~GQ~~~V~vy~l~~~~TiEe~i~~~~~~K~~~~~~~~~~~~-~~~~~~~~~~~~~l~~ 814 (815)
.+.||+||+||+||+++|+||+|++.|||||+|++++..|..+...+++++. ..-..++.++|..||.
T Consensus 573 ~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~Ld~~Vi~~g~~~~~~~~~~~eL~~ll~ 641 (1033)
T PLN03142 573 VDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVR 641 (1033)
T ss_pred HHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHhcCcccccccCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988886542 2225678888888774
No 7
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=2.3e-81 Score=693.97 Aligned_cols=472 Identities=28% Similarity=0.469 Sum_probs=394.0
Q ss_pred ccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHH
Q 003502 120 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA 199 (815)
Q Consensus 120 ~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~l 199 (815)
..||+||++|++||+..|... .+||||||||||||+|+|+++.++....... +|+|||||.+.
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~-~n~ILADEmgLgktvqti~fl~~l~~~~~~~----------------gpflvvvplst 431 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKR-NNCILADEMGLGKTVQTITFLSYLFHSLQIH----------------GPFLVVVPLST 431 (1373)
T ss_pred chhhhhhcccchhHHHHHHhc-ccceehhhcCCCcchHHHHHHHHHHHhhhcc----------------CCeEEEeehhh
Confidence 469999999999999999987 4999999999999999999999988766543 79999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEeCCCCcCCcc-----------cccCCCEEEechhhhHHHhhhccCCCcccccccCccc
Q 003502 200 VTQWVSEINRFTSVGSTKVLIYHGSNRERSAK-----------QFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSF 268 (815)
Q Consensus 200 l~qW~~Ei~~~~~~~~~~v~~~~g~~~~~~~~-----------~~~~~~vvi~ty~~l~~~~~~~~~~~~~~~~~~~~~~ 268 (815)
+..|++||..|+ .+++++|+|....+... ..-.++++||||+++.++
T Consensus 432 ~~~W~~ef~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkD------------------- 489 (1373)
T KOG0384|consen 432 ITAWEREFETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKD------------------- 489 (1373)
T ss_pred hHHHHHHHHHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhcc-------------------
Confidence 999999999998 49999999986544221 112589999999998665
Q ss_pred chhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceeeEEEeecceecc
Q 003502 269 YQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIK 348 (815)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k 348 (815)
...|..++|.+++|||||+++
T Consensus 490 -----------------------------------------------------------k~~L~~i~w~~~~vDeahrLk 510 (1373)
T KOG0384|consen 490 -----------------------------------------------------------KAELSKIPWRYLLVDEAHRLK 510 (1373)
T ss_pred -----------------------------------------------------------HhhhccCCcceeeecHHhhcC
Confidence 244888999999999999999
Q ss_pred CCCchHHHHHHhhhcCcEEEeeCCCCCCchhhHHHHHHHhccCCCCccccccccccccccCCCCCCCCCCCCcchhhhHh
Q 003502 349 DRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWN 428 (815)
Q Consensus 349 n~~s~~~~~~~~l~~~~r~~LTgTPi~n~~~el~~ll~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (815)
|..+..+..+..+...+|+++||||+||++.|||+|++||.|..|..+ ..|.
T Consensus 511 N~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~----------------------------~~f~ 562 (1373)
T KOG0384|consen 511 NDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSW----------------------------DEFL 562 (1373)
T ss_pred chHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcH----------------------------HHHH
Confidence 999999999999999999999999999999999999999998877542 1122
Q ss_pred hhhcccccccCCCcchhHHHHHHHHHHhhHhhhhhccCCcccccCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHHHHHH
Q 003502 429 RYVATPIQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTY 508 (815)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~lrr~k~~v~~~~~lp~~~~~~~~~~l~~~~~~~y~~l~~~~~~~~~~~ 508 (815)
..+ .......+..++..|.|+|+||.++||... +|++.++++.|+|++.|.++|..++.+....+.
T Consensus 563 ~~~----------~~~~e~~~~~L~~~L~P~~lRr~kkdveks--lp~k~E~IlrVels~lQk~yYk~ILtkN~~~Lt-- 628 (1373)
T KOG0384|consen 563 EEF----------DEETEEQVRKLQQILKPFLLRRLKKDVEKS--LPPKEETILRVELSDLQKQYYKAILTKNFSALT-- 628 (1373)
T ss_pred Hhh----------cchhHHHHHHHHHHhhHHHHHHHHhhhccC--CCCCcceEEEeehhHHHHHHHHHHHHhhHHHHh--
Confidence 221 112344456678899999999999999877 999999999999999999999999988776643
Q ss_pred HHhcccccchHHHHHHHHHHHHHhcCcccccccccccccCCChhhhhhhhhhcCcccccCCCCccccCCchhhhhhHhhh
Q 003502 509 VQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDS 588 (815)
Q Consensus 509 ~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~ 588 (815)
.|....+ .++++.++.||++||||+|+...+...+.....
T Consensus 629 --KG~~g~~-~~lLNimmELkKccNHpyLi~gaee~~~~~~~~------------------------------------- 668 (1373)
T KOG0384|consen 629 --KGAKGST-PSLLNIMMELKKCCNHPYLIKGAEEKILGDFRD------------------------------------- 668 (1373)
T ss_pred --ccCCCCC-chHHHHHHHHHHhcCCccccCcHHHHHHHhhhh-------------------------------------
Confidence 3333333 789999999999999999985332211110000
Q ss_pred ccccCCCCCCCCCCCcccccccCCCCCCCCccccccCccccchhhhhhccccCcchHHHHHHHHHHHHHhcCCCceEEEE
Q 003502 589 SASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVF 668 (815)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~~l~~~~~~~~~~KvIIF 668 (815)
..........+..|.|+-.|-.+|-.+.+ .|||||||
T Consensus 669 -----------------------------------------~~~d~~L~~lI~sSGKlVLLDKLL~rLk~--~GHrVLIF 705 (1373)
T KOG0384|consen 669 -----------------------------------------KMRDEALQALIQSSGKLVLLDKLLPRLKE--GGHRVLIF 705 (1373)
T ss_pred -----------------------------------------cchHHHHHHHHHhcCcEEeHHHHHHHHhc--CCceEEEh
Confidence 00011112234568899888888888844 56999999
Q ss_pred ccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcC-CCCceEEEEecCCCcccccccccCEEEEeCCCCCcch
Q 003502 669 SQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTE-DPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAV 747 (815)
Q Consensus 669 s~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~-~~~~~vlL~st~~g~~GlNL~~a~~vI~~d~~wnp~~ 747 (815)
||++.|+|+|+++|...|++|.+|+|++..+.|+++|+.|+. +++-+|||+||+|||.||||..|++|||||.+|||..
T Consensus 706 SQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQN 785 (1373)
T KOG0384|consen 706 SQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQN 785 (1373)
T ss_pred HHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcch
Confidence 999999999999999999999999999999999999999998 6788999999999999999999999999999999999
Q ss_pred HHHHhHhhhcCCCCCcEEEEEEEeCCcHHHHHHHHHHHHHHHhhhhcC-----CCcccccCCCHHHHHhhhc
Q 003502 748 EQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVG-----GSADAFGKLTEADMRFLFV 814 (815)
Q Consensus 748 ~~QaigR~~R~GQ~~~V~vy~l~~~~TiEe~i~~~~~~K~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~ 814 (815)
+.||.+|||||||++.|.|||||+++|+||.|+++...|..+-.+++. +....-..++.+||..|+.
T Consensus 786 DLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~t~~~~s~~~~f~K~ELsaILK 857 (1373)
T KOG0384|consen 786 DLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMDTKGKTSKSNPFSKEELSAILK 857 (1373)
T ss_pred HHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhhccccccCCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999888766653 2334456788888887763
No 8
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=3.9e-80 Score=647.17 Aligned_cols=541 Identities=33% Similarity=0.523 Sum_probs=423.5
Q ss_pred CCCCCCcccccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCcc
Q 003502 111 TAEDPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKA 190 (815)
Q Consensus 111 ~~~~p~~~~~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (815)
..+.|.++...|+|||+.++.||.+++.+...||||||+||+|||+++|++|+...........- .....+
T Consensus 315 lte~P~g~~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~---------~~~a~~ 385 (901)
T KOG4439|consen 315 LTETPDGLKVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKK---------GESASK 385 (901)
T ss_pred ccCCCCcceeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhccc---------ccccCC
Confidence 35668889999999999999999999999999999999999999999999999877544321110 011226
Q ss_pred EEEEcChHHHHHHHHHHHHhcCCCCcEEEEEeCCC-CcCCcccccCCCEEEechhhhHHHhhhccCCCcccccccCcccc
Q 003502 191 TLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSN-RERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFY 269 (815)
Q Consensus 191 ~LIV~P~~ll~qW~~Ei~~~~~~~~~~v~~~~g~~-~~~~~~~~~~~~vvi~ty~~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (815)
||||||++|+.||..|+..-+....+.|++|||.+ +......+..||||||||..+.+.-..
T Consensus 386 TLII~PaSli~qW~~Ev~~rl~~n~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~----------------- 448 (901)
T KOG4439|consen 386 TLIICPASLIHQWEAEVARRLEQNALSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPDD----------------- 448 (901)
T ss_pred eEEeCcHHHHHHHHHHHHHHHhhcceEEEEecCCccccCCHHHHhhcceEEEeeeccccCCch-----------------
Confidence 99999999999999999999888899999999998 677778899999999999987551000
Q ss_pred hhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceeeEEEeecceeccC
Q 003502 270 QKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKD 349 (815)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~kn 349 (815)
........++|..+.|.+||+||||.|||
T Consensus 449 ---------------------------------------------------e~~~~~~~spL~~I~W~RVILDEAH~IrN 477 (901)
T KOG4439|consen 449 ---------------------------------------------------ELEEGKNSSPLARIAWSRVILDEAHNIRN 477 (901)
T ss_pred ---------------------------------------------------hhhcccCccHHHHhhHHHhhhhhhhhhcc
Confidence 00012235779999999999999999999
Q ss_pred CCchHHHHHHhhhcCcEEEeeCCCCCCchhhHHHHHHHhccCCCCccccccccccccccCCCCCCCCCCCCcchhhhHhh
Q 003502 350 RRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNR 429 (815)
Q Consensus 350 ~~s~~~~~~~~l~~~~r~~LTgTPi~n~~~el~~ll~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (815)
+.++.+.+++.|.+.+||+||||||+|++.|+|+|++||+..||++. ..|.+
T Consensus 478 ~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~----------------------------~~Wke 529 (901)
T KOG4439|consen 478 SNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDL----------------------------KQWKE 529 (901)
T ss_pred cchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchH----------------------------HHHHH
Confidence 99999999999999999999999999999999999999999998653 45777
Q ss_pred hhcccccccCCCcchhHHHHHHHHHHhhHhhhhhccCCccc---ccCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHHHH
Q 003502 430 YVATPIQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAA---DLALPPRIVSLRRDSLDIREADYYESLYSESQAQFN 506 (815)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~lrr~k~~v~~---~~~lp~~~~~~~~~~l~~~~~~~y~~l~~~~~~~~~ 506 (815)
.+..+-. ....++.-+..+.|+||||..... ...+|++...++.+.|+..+...|+.+.......+.
T Consensus 530 ~i~~~s~----------~g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~k 599 (901)
T KOG4439|consen 530 NIDNMSK----------GGANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFK 599 (901)
T ss_pred hccCccc----------cchhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHH
Confidence 6654422 223344567899999999987633 345899999999999999999999999888877776
Q ss_pred HHHHhcc------------------------------------cccchHHHHHHHHHHHHHhcCccccccccccccc---
Q 003502 507 TYVQAGT------------------------------------VMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLR--- 547 (815)
Q Consensus 507 ~~~~~~~------------------------------------~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~--- 547 (815)
.++.... .......++.+|.+|||+|+||.+..........
T Consensus 600 q~L~~~e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~ 679 (901)
T KOG4439|consen 600 QFLLQREDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMN 679 (901)
T ss_pred HHHHhhhhhccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhc
Confidence 6543211 1112356799999999999999765432221111
Q ss_pred CCChhhhhhhhhhcCcccccCCCCccccCCchhhhhhHhhhccccCCCCCCCCCCCcccccccCCCCCCCCccccccCcc
Q 003502 548 GETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFK 627 (815)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (815)
+....+.+..... .. ...+....+.|.. ..|. +.+...+.
T Consensus 680 g~~~sde~~~e~~--~l-~el~k~~~T~~~~-------------------D~~e-----------d~p~~~~~------- 719 (901)
T KOG4439|consen 680 GGDDSDEEQLEED--NL-AELEKNDETDCSD-------------------DNCE-----------DLPTAFPD------- 719 (901)
T ss_pred Ccchhhhhhhhhh--HH-Hhhhhcccccccc-------------------cccc-----------cccccchh-------
Confidence 1111111100000 00 0000000000000 0000 00000000
Q ss_pred ccchhhhhhccccCcchHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHh
Q 003502 628 SSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINR 707 (815)
Q Consensus 628 ~~~~~~~~~~~~~~~s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~ 707 (815)
-.......|.|+..+++.+..++ ....+|+||-+|++.+++++...|...|..|..++|.....+|+.+|+.
T Consensus 720 -------q~Fe~~r~S~Ki~~~l~~le~i~-~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~ 791 (901)
T KOG4439|consen 720 -------QAFEPDRPSCKIAMVLEILETIL-TSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDE 791 (901)
T ss_pred -------hhcccccchhHHHHHHHHHHHHh-hcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHH
Confidence 00233456999999999999883 4557899999999999999999999999999999999999999999999
Q ss_pred hcCC-CCceEEEEecCCCcccccccccCEEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeCCcHHHHHHHHHHHH
Q 003502 708 FTED-PDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKK 786 (815)
Q Consensus 708 F~~~-~~~~vlL~st~~g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~TiEe~i~~~~~~K 786 (815)
||.. ++.+|+|+|..+||.||||++|||+|++|++|||+.+.||.+||+|+||+++|+||||++.||+|++|..+|..|
T Consensus 792 FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQdkK 871 (901)
T KOG4439|consen 792 FNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQDKK 871 (901)
T ss_pred HHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHHHHHHHHHHH
Confidence 9974 359999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCcc-cccCCCHHHHHhhhc
Q 003502 787 KLVFEGTVGGSAD-AFGKLTEADMRFLFV 814 (815)
Q Consensus 787 ~~~~~~~~~~~~~-~~~~~~~~~~~~l~~ 814 (815)
.++...++.|... ..++++..+++.||+
T Consensus 872 ldlA~~VL~G~~tr~~~kLT~adlk~LFg 900 (901)
T KOG4439|consen 872 LDLAKGVLTGSATRKMNKLTLADLKKLFG 900 (901)
T ss_pred HHHHhhhccCccccccccccHHHHHHHhC
Confidence 9999999987665 789999999999996
No 9
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=5.6e-79 Score=662.83 Aligned_cols=569 Identities=29% Similarity=0.431 Sum_probs=418.7
Q ss_pred CCCCCCcccccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCcc
Q 003502 111 TAEDPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKA 190 (815)
Q Consensus 111 ~~~~p~~~~~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (815)
..+.|.-+...||.||+.|+.||...++... +||||||||||||||+|+|++++.-..++|| |
T Consensus 605 ktpvPsLLrGqLReYQkiGLdWLatLYeknl-NGILADEmGLGKTIQtISllAhLACeegnWG----------------P 667 (1958)
T KOG0391|consen 605 KTPVPSLLRGQLREYQKIGLDWLATLYEKNL-NGILADEMGLGKTIQTISLLAHLACEEGNWG----------------P 667 (1958)
T ss_pred ccCchHHHHHHHHHHHHhhHHHHHHHHHhcc-cceehhhhcccchhHHHHHHHHHHhcccCCC----------------C
Confidence 4566777888999999999999999888775 8999999999999999999999998888885 5
Q ss_pred EEEEcChHHHHHHHHHHHHhcCCCCcEEEEEeCCCCcCCccc-----ccCCCEEEechhhhHHHhhhccCCCcccccccC
Q 003502 191 TLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQ-----FSEFDFVITTYSIIEADYRKHVMPPKQKCQYCG 265 (815)
Q Consensus 191 ~LIV~P~~ll~qW~~Ei~~~~~~~~~~v~~~~g~~~~~~~~~-----~~~~~vvi~ty~~l~~~~~~~~~~~~~~~~~~~ 265 (815)
.|||||.+++-+|.-||++|+| .++|+.|+|+.+.+..+. -+.|+|.||+|..+..++..
T Consensus 668 HLIVVpTsviLnWEMElKRwcP--glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~A------------- 732 (1958)
T KOG0391|consen 668 HLIVVPTSVILNWEMELKRWCP--GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTA------------- 732 (1958)
T ss_pred ceEEeechhhhhhhHHHhhhCC--cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHH-------------
Confidence 6999999999999999999999 899999999977654432 24688999999998877532
Q ss_pred cccchhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceeeEEEeecce
Q 003502 266 KSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAH 345 (815)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIvDEaH 345 (815)
|....|.++|+||||
T Consensus 733 -----------------------------------------------------------------FkrkrWqyLvLDEaq 747 (1958)
T KOG0391|consen 733 -----------------------------------------------------------------FKRKRWQYLVLDEAQ 747 (1958)
T ss_pred -----------------------------------------------------------------HHhhccceeehhhhh
Confidence 666789999999999
Q ss_pred eccCCCchHHHHHHhhhcCcEEEeeCCCCCCchhhHHHHHHHhccCCCCccccccccccccccCCCCCCCCCCCCcchhh
Q 003502 346 FIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFC 425 (815)
Q Consensus 346 ~~kn~~s~~~~~~~~l~~~~r~~LTgTPi~n~~~el~~ll~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (815)
+|||..|+.|+++..+++.+|++|||||++|++.|||+|++||-|..|... .
T Consensus 748 nIKnfksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~sh----------------------------d 799 (1958)
T KOG0391|consen 748 NIKNFKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASH----------------------------D 799 (1958)
T ss_pred hhcchhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhh----------------------------h
Confidence 999999999999999999999999999999999999999999988776432 3
Q ss_pred hHhhhhcccccccCCCc-chhHHHHHHHHHHhhHhhhhhccCCcccccCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHH
Q 003502 426 WWNRYVATPIQTHGNSY-GGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQ 504 (815)
Q Consensus 426 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~~lrr~k~~v~~~~~lp~~~~~~~~~~l~~~~~~~y~~l~~~~~~~ 504 (815)
.|+.+|.+|+...-... .-....+..+++++++|+|||+|.||... +|.+.++++.|.|+..|+.+|+.+..+...+
T Consensus 800 ~fk~wfsnPltgmiEgsqeyn~klV~RLHkVlrPfiLRRlK~dVEKQ--lpkKyEHvv~CrLSkRQR~LYDDfmsq~~TK 877 (1958)
T KOG0391|consen 800 IFKPWFSNPLTGMIEGSQEYNHKLVIRLHKVLRPFILRRLKRDVEKQ--LPKKYEHVVKCRLSKRQRALYDDFMSQPGTK 877 (1958)
T ss_pred hHHHHhcCcchhhcccchhhchHHHHHHHHHhHHHHHHHHHHHHHHh--cchhhhhheeeehhhhHHHHHHHHhhccchh
Confidence 46667777765322111 11244566779999999999999999876 9999999999999999999999987654433
Q ss_pred HHHHHHhcccccchHHHHHHHHHHHHHhcCccccccccccc---------------------------------------
Q 003502 505 FNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTAS--------------------------------------- 545 (815)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~--------------------------------------- 545 (815)
- .-..++..++++.++.||++||||.|+.......
T Consensus 878 e------tLkSGhfmsVlnilmqLrKvCNHPnLfEpRpv~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~ 951 (1958)
T KOG0391|consen 878 E------TLKSGHFMSVLNILMQLRKVCNHPNLFEPRPVGSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTS 951 (1958)
T ss_pred h------HhhcCchhHHHHHHHHHHHHcCCCCcCCCCCCCcccccCceeccccccchhhhhhhccCCCCchhhhcCCCcc
Confidence 1 1234567889999999999999998861100000
Q ss_pred --------------------ccCCC---------------------------hh-hhhh--------------h------
Q 003502 546 --------------------LRGET---------------------------EA-DAEH--------------V------ 557 (815)
Q Consensus 546 --------------------~~~~~---------------------------~~-~~~~--------------~------ 557 (815)
+.... +. .... +
T Consensus 952 ~vp~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~~g~~F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p 1031 (1958)
T KOG0391|consen 952 AVPAVRPASAKLSASPLASALPQLSLRGRPPIPTFAGAPFQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGP 1031 (1958)
T ss_pred cccccchhhhhhcccccccccccccCCCCCCCccccccccccchhcccCCccccccccchhcccchheeeccccccccCc
Confidence 00000 00 0000 0
Q ss_pred ----hhh-----------cC-----ccc-----------ccCCCCc----------------------------------
Q 003502 558 ----QQV-----------CG-----LCN-----------DLADDPV---------------------------------- 572 (815)
Q Consensus 558 ----~~~-----------~~-----~~~-----------~~~~~~~---------------------------------- 572 (815)
.+. |. .|. .....++
T Consensus 1032 ~~~veq~n~~k~~~htt~~~p~~~~~svl~~~sv~t~pl~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gt 1111 (1958)
T KOG0391|consen 1032 QSRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVPTQPLLRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGT 1111 (1958)
T ss_pred HhHhhcCCCceeeeeecccCccccccceeeeccccccccccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcch
Confidence 000 00 000 0000000
Q ss_pred --------------------------------ccc---CCchhhhhhHhh------------------------------
Q 003502 573 --------------------------------VTN---CGHAFCKACLFD------------------------------ 587 (815)
Q Consensus 573 --------------------------------~~~---~~~~~c~~c~~~------------------------------ 587 (815)
... .|..+-+.|+..
T Consensus 1112 at~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~APvyg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iI 1191 (1958)
T KOG0391|consen 1112 ATLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVNAPVYGRELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDII 1191 (1958)
T ss_pred hhhccCCCccccccchhhHHHHHHHHHHHHHhhccCcccchhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHH
Confidence 000 000111111111
Q ss_pred -hccc------cCCCCCCCCCCCcccccccCC----CCCCCCccccccCccccchhhhhhccc-cCcchHHHHHHHHHHH
Q 003502 588 -SSAS------KFVAKCPTCSIPLTVDFTANE----GAGNRTSKTTIKGFKSSSILNRIQLDE-FQSSTKIEALREEIRF 655 (815)
Q Consensus 588 -~~~~------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~Kl~~l~~~l~~ 655 (815)
..+- .....|..|+-+-.+...... ......+..+.........+....+.. .....|+..|.=+|++
T Consensus 1192 drfafv~ppvva~ppslra~~ppp~~~~r~r~~~~qlrsel~p~~~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQ 1271 (1958)
T KOG0391|consen 1192 DRFAFVIPPVVAAPPSLRAPRPPPLYSHRMRILRQQLRSELAPYFQQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQ 1271 (1958)
T ss_pred HHheeecccccCCChhhcCCCCCcccchHHHHHHHHHHHHhccccchhhccchhhhcCcchheeecccchHHHHHHHHHH
Confidence 1000 001111111111110000000 000000000000000011111111111 2347899999999999
Q ss_pred HHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCE
Q 003502 656 MVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASH 735 (815)
Q Consensus 656 ~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~ 735 (815)
+.. .+|+||||+|++.|+|+|+.+|..+|+-|++++|+++.++|+.+..+||.+..++|||+||+.||.||||++|++
T Consensus 1272 Lk~--eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADT 1349 (1958)
T KOG0391|consen 1272 LKS--EGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADT 1349 (1958)
T ss_pred HHh--cCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCce
Confidence 854 559999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeCCcHHHHHHHHHHHHHHHhhhhcCCCcccccCCCHHHHHhhhc
Q 003502 736 VFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFGKLTEADMRFLFV 814 (815)
Q Consensus 736 vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~TiEe~i~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 814 (815)
|||||.+|||..+.||-+|+|||||+++|+||||+...||||+|+.....|+.+-+-++.|+.-...-+...++++||.
T Consensus 1350 VvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkkanqKr~L~evaiqggdfTt~ff~q~ti~dLFd 1428 (1958)
T KOG0391|consen 1350 VVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKKANQKRMLDEVAIQGGDFTTAFFKQRTIRDLFD 1428 (1958)
T ss_pred EEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhhhhHHHHHHHHhhccCCccHHHHhhhhHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999888888776666667778888885
No 10
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=4.6e-78 Score=628.98 Aligned_cols=538 Identities=27% Similarity=0.412 Sum_probs=403.5
Q ss_pred cCCCCCCcccccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCc
Q 003502 110 ETAEDPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIK 189 (815)
Q Consensus 110 ~~~~~p~~~~~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (815)
.+.++|.-+...|+.||+.|++|+.....++. +||||||||||||+|+|++++++.+....| +
T Consensus 556 ~tV~qPkil~ctLKEYQlkGLnWLvnlYdqGi-NGILADeMGLGKTVQsisvlAhLaE~~nIw----------------G 618 (1185)
T KOG0388|consen 556 RTVPQPKILKCTLKEYQLKGLNWLVNLYDQGI-NGILADEMGLGKTVQSISVLAHLAETHNIW----------------G 618 (1185)
T ss_pred eeccCchhhhhhhHHHhhccHHHHHHHHHccc-cceehhhhccchhHHHHHHHHHHHHhccCC----------------C
Confidence 35677888999999999999999999888886 899999999999999999999999888877 6
Q ss_pred cEEEEcChHHHHHHHHHHHHhcCCCCcEEEEEeCCCCcCCc-----------ccccCCCEEEechhhhHHHhhhccCCCc
Q 003502 190 ATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSA-----------KQFSEFDFVITTYSIIEADYRKHVMPPK 258 (815)
Q Consensus 190 ~~LIV~P~~ll~qW~~Ei~~~~~~~~~~v~~~~g~~~~~~~-----------~~~~~~~vvi~ty~~l~~~~~~~~~~~~ 258 (815)
|+|||+|++++.+|.+||.+|+| .++++.|.|+..++.. .....++||||||+++..+-
T Consensus 619 PFLVVtpaStL~NWaqEisrFlP--~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDe-------- 688 (1185)
T KOG0388|consen 619 PFLVVTPASTLHNWAQEISRFLP--SFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDE-------- 688 (1185)
T ss_pred ceEEeehHHHHhHHHHHHHHhCc--cceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechH--------
Confidence 88999999999999999999999 8999999998765532 23457899999999987653
Q ss_pred ccccccCcccchhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceeeE
Q 003502 259 QKCQYCGKSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWER 338 (815)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 338 (815)
.+|..+.|.+
T Consensus 689 ----------------------------------------------------------------------ky~qkvKWQY 698 (1185)
T KOG0388|consen 689 ----------------------------------------------------------------------KYLQKVKWQY 698 (1185)
T ss_pred ----------------------------------------------------------------------HHHHhhhhhh
Confidence 2378889999
Q ss_pred EEeecceeccCCCchHHHHHHhhhcCcEEEeeCCCCCCchhhHHHHHHHhccCCCCccccccccccccccCCCCCCCCCC
Q 003502 339 IILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPH 418 (815)
Q Consensus 339 vIvDEaH~~kn~~s~~~~~~~~l~~~~r~~LTgTPi~n~~~el~~ll~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (815)
+|+|||+.||...|.+++.+..+++++|++||||||||++.|||+||+|+-|..|..
T Consensus 699 MILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDs----------------------- 755 (1185)
T KOG0388|consen 699 MILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDS----------------------- 755 (1185)
T ss_pred eehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhc-----------------------
Confidence 999999999999999999999999999999999999999999999999998877632
Q ss_pred CCcchhhhHhhhhcccccccCCCcc-hhHHHHHHHHHHhhHhhhhhccCCcccccCCCCeEEEEeecCCCHHHHHHHHHH
Q 003502 419 NSVRHFCWWNRYVATPIQTHGNSYG-GRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESL 497 (815)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~~lrr~k~~v~~~~~lp~~~~~~~~~~l~~~~~~~y~~l 497 (815)
...|+++|...|..+..... -......+++.++.|||+||.|++|..+ |..+++..++|.|+..|..+|+.+
T Consensus 756 -----hneFseWFSKdIEshAe~~~tlneqqL~RLH~ILKPFMLRRvKkdV~sE--Lg~Kteidv~CdLs~RQ~~lYq~i 828 (1185)
T KOG0388|consen 756 -----HNEFSEWFSKDIESHAEMNTTLNEQQLQRLHAILKPFMLRRVKKDVISE--LGQKTEIDVYCDLSYRQKVLYQEI 828 (1185)
T ss_pred -----hHHHHHHHhhhhHhHHHhcCCcCHHHHHHHHHHHhHHHHHHHHHHHHHH--hccceEEEEEechhHHHHHHHHHH
Confidence 23355555555554332221 1234456778999999999999999877 788899999999999999999998
Q ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHhcCccccccccccccc-CCC---h--------------------hh
Q 003502 498 YSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLR-GET---E--------------------AD 553 (815)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~-~~~---~--------------------~~ 553 (815)
...... ..+..+++.||++|+||.|+...+..... .+. . .+
T Consensus 829 k~~iS~---------------~E~~~~vmQlrKVCNHPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d 893 (1185)
T KOG0388|consen 829 KRSISS---------------MEMENLVMQLRKVCNHPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKD 893 (1185)
T ss_pred HHHhhH---------------HHHHHHHHHHHHhcCChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHH
Confidence 766432 12335899999999999987433221110 000 0 00
Q ss_pred ---------hhhhhhhcCcccccCC-------CCccc--cCCch-------hh----hhhHhhh----------------
Q 003502 554 ---------AEHVQQVCGLCNDLAD-------DPVVT--NCGHA-------FC----KACLFDS---------------- 588 (815)
Q Consensus 554 ---------~~~~~~~~~~~~~~~~-------~~~~~--~~~~~-------~c----~~c~~~~---------------- 588 (815)
.+.+...|....-... .++++ ..|.. .- ...+...
T Consensus 894 ~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~ 973 (1185)
T KOG0388|consen 894 ALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAY 973 (1185)
T ss_pred HHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccceeeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHH
Confidence 0111111221111100 11111 01110 00 0000000
Q ss_pred -ccccCCCCCCCCCCCcccccccCCCCCCCCccccccCc--ccc-chhhhhhccccCcchHHHHHHHHHHHHHhcCCCce
Q 003502 589 -SASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGF--KSS-SILNRIQLDEFQSSTKIEALREEIRFMVERDGSAK 664 (815)
Q Consensus 589 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~s~Kl~~l~~~l~~~~~~~~~~K 664 (815)
+.....+..|....+.-.- ......+...+... ... .+.-......+..|.|+..|-++|.++.. .||+
T Consensus 974 ~L~~~~y~y~P~v~apPvLI-----~~ead~PeId~E~~~~pLn~~i~~Ppm~~FitdSgKL~~LDeLL~kLka--egHR 1046 (1185)
T KOG0388|consen 974 RLQRHVYCYSPVVAAPPVLI-----SNEADLPEIDLENRHIPLNTTIYVPPMNTFITDSGKLVVLDELLPKLKA--EGHR 1046 (1185)
T ss_pred HhhhheeeeccccCCCCeee-----ecccCCCCCCccccCcccccceecCcHHhhhccccceeeHHHHHHHhhc--CCce
Confidence 0000122223333221100 00000000000000 000 00011112346779999999999999844 5699
Q ss_pred EEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEeCCCCC
Q 003502 665 GIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWN 744 (815)
Q Consensus 665 vIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~~d~~wn 744 (815)
||+|.|++.|+++|+++|...|++|++++|+.+..+|..+|..|+. ++++|||+||++||.||||+.|++|||||.+||
T Consensus 1047 vL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~-sdiFvFLLSTRAGGLGINLTAADTViFYdSDWN 1125 (1185)
T KOG0388|consen 1047 VLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQA-SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWN 1125 (1185)
T ss_pred EEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccC-CceEEEEEecccCcccccccccceEEEecCCCC
Confidence 9999999999999999999999999999999999999999999999 699999999999999999999999999999999
Q ss_pred cchHHHHhHhhhcCCCCCcEEEEEEEeCCcHHHHHHHHHHHHHHHhhhhcCCC
Q 003502 745 PAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGS 797 (815)
Q Consensus 745 p~~~~QaigR~~R~GQ~~~V~vy~l~~~~TiEe~i~~~~~~K~~~~~~~~~~~ 797 (815)
|..+.||++||||.||+++|+||+|++.+||||+|+++...|..+.+-++-|+
T Consensus 1126 PT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~~vQq~Vm~G~ 1178 (1185)
T KOG0388|consen 1126 PTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQKDEVQQMVMHGN 1178 (1185)
T ss_pred cchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999998888777654
No 11
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=7.2e-72 Score=613.74 Aligned_cols=497 Identities=25% Similarity=0.331 Sum_probs=395.1
Q ss_pred CCcccccchHHHHHHHHHHHHHhhc-----cCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCc
Q 003502 115 PPDLITPLLRYQKEWLAWALKQEES-----AIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIK 189 (815)
Q Consensus 115 p~~~~~~L~~yQ~~~~~~~~~~~~~-----~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (815)
.|.+...|||||++|+.||...... ...|||+||+||+|||+++|++|..+++..+.+.+ .+.
T Consensus 232 dP~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~------------~~~ 299 (776)
T KOG0390|consen 232 DPLLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKP------------LIN 299 (776)
T ss_pred cccHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccc------------ccc
Confidence 4556778999999999999877643 34699999999999999999999999987655333 457
Q ss_pred cEEEEcChHHHHHHHHHHHHhcCCCCcEEEEEeCCCCcCCccc---------ccCCCEEEechhhhHHHhhhccCCCccc
Q 003502 190 ATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQ---------FSEFDFVITTYSIIEADYRKHVMPPKQK 260 (815)
Q Consensus 190 ~~LIV~P~~ll~qW~~Ei~~~~~~~~~~v~~~~g~~~~~~~~~---------~~~~~vvi~ty~~l~~~~~~~~~~~~~~ 260 (815)
..|||||++|+.+|.+||.+|.....+..+.++|..+..+... .-..-|.+.+|+++......
T Consensus 300 k~lVV~P~sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~-------- 371 (776)
T KOG0390|consen 300 KPLVVAPSSLVNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK-------- 371 (776)
T ss_pred ccEEEccHHHHHHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--------
Confidence 8899999999999999999999876888999999877522211 12345789999999865443
Q ss_pred ccccCcccchhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceeeEEE
Q 003502 261 CQYCGKSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERII 340 (815)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI 340 (815)
+....+++||
T Consensus 372 ----------------------------------------------------------------------il~~~~glLV 381 (776)
T KOG0390|consen 372 ----------------------------------------------------------------------ILLIRPGLLV 381 (776)
T ss_pred ----------------------------------------------------------------------HhcCCCCeEE
Confidence 5556789999
Q ss_pred eecceeccCCCchHHHHHHhhhcCcEEEeeCCCCCCchhhHHHHHHHhccCCCCccccccccccccccCCCCCCCCCCCC
Q 003502 341 LDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNS 420 (815)
Q Consensus 341 vDEaH~~kn~~s~~~~~~~~l~~~~r~~LTgTPi~n~~~el~~ll~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (815)
+||+|+.||..|.+++++..+.+++|++|||||+||++.|+|++++|.+|..
T Consensus 382 cDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~---------------------------- 433 (776)
T KOG0390|consen 382 CDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGF---------------------------- 433 (776)
T ss_pred ECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhh----------------------------
Confidence 9999999999999999999999999999999999999999999999998654
Q ss_pred cchhhhHhhhhcccccccCCCcchh-----HHHHHHHHHHhhHhhhhhccCCcccccCCCCeEEEEeecCCCHHHHHHHH
Q 003502 421 VRHFCWWNRYVATPIQTHGNSYGGR-----RAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYE 495 (815)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ll~~~~lrr~k~~v~~~~~lp~~~~~~~~~~l~~~~~~~y~ 495 (815)
+.+...|...+..++...+...... .+....+..+...|++||+......+ ||+..+.++.+.+++.|..+|.
T Consensus 434 Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~--LP~k~e~vv~~n~t~~Q~~~~~ 511 (776)
T KOG0390|consen 434 LGSISSFKKKFEIPILRGRDADASEEDREREERLQELRELTNKFILRRTGDILLKY--LPGKYEYVVFCNPTPIQKELYK 511 (776)
T ss_pred ccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHHHHHHhheeecccchhhhh--CCCceeEEEEeCCcHHHHHHHH
Confidence 4566678888888887755543221 22255667899999999998666666 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHhcCcccccccccccccCCChhhhhhhhhhcCcccccCCCCcccc
Q 003502 496 SLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTN 575 (815)
Q Consensus 496 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (815)
.+.... ... . .. ...+..+..|+++|+||.|+...+........ .....+
T Consensus 512 ~l~~~~-~~~-~------~~---~~~l~~~~~L~k~cnhP~L~~~~~~~~~e~~~-----------------~~~~~~-- 561 (776)
T KOG0390|consen 512 KLLDSM-KMR-T------LK---GYALELITKLKKLCNHPSLLLLCEKTEKEKAF-----------------KNPALL-- 561 (776)
T ss_pred HHHHHH-Hhh-h------hh---cchhhHHHHHHHHhcCHHhhcccccccccccc-----------------cChHhh--
Confidence 987753 110 0 00 11567889999999999998422111000000 000000
Q ss_pred CCchhhhhhHhhhccccCCCCCCCCCCCcccccccCCCCCCCCccccccCccccchhhhhhccccCcchHHHHHHHHHHH
Q 003502 576 CGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRF 655 (815)
Q Consensus 576 ~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~~l~~ 655 (815)
... ........+...|.|+..|+.++..
T Consensus 562 ----------------------------------~~~------------------~~~~~~~~~~~ks~kl~~L~~ll~~ 589 (776)
T KOG0390|consen 562 ----------------------------------LDP------------------GKLKLDAGDGSKSGKLLVLVFLLEV 589 (776)
T ss_pred ----------------------------------hcc------------------cccccccccchhhhHHHHHHHHHHH
Confidence 000 0000111222347888888888855
Q ss_pred HHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCc-eEEEEecCCCcccccccccC
Q 003502 656 MVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDC-KIFLMSLKAGGVALNLTVAS 734 (815)
Q Consensus 656 ~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~-~vlL~st~~g~~GlNL~~a~ 734 (815)
..+ ....++++-++|+.++++++..+...|+.+++++|+|+..+|+.+|+.||+.++. +|||+|++|||+||||.+|+
T Consensus 590 ~~e-k~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAs 668 (776)
T KOG0390|consen 590 IRE-KLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGAS 668 (776)
T ss_pred Hhh-hcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccc
Confidence 543 3356888888999999999999999999999999999999999999999995555 99999999999999999999
Q ss_pred EEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeCCcHHHHHHHHHHHHHHHhhhhcCCCcccccCCCHHHHHhhhc
Q 003502 735 HVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFGKLTEADMRFLFV 814 (815)
Q Consensus 735 ~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~TiEe~i~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 814 (815)
+||+|||+|||+.+.||++||||.||+++|+||+|++.||+||+||++|..|..+...+++.+...-...+.+++..||.
T Consensus 669 Rlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~~K~~lS~~v~~~~~~~~~~~~~~~~~~lf~ 748 (776)
T KOG0390|consen 669 RLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQRQTHKEGLSSMVFDEEEDVEKHFFTEDLKTLFD 748 (776)
T ss_pred eEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHHHHHhhhhhheEEecccccccccchHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999987766555566677777763
No 12
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=3.3e-71 Score=592.72 Aligned_cols=587 Identities=21% Similarity=0.276 Sum_probs=407.2
Q ss_pred ccCCCCCCcccccchHHHHHHHHHHHHHhh--------ccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCC
Q 003502 109 TETAEDPPDLITPLLRYQKEWLAWALKQEE--------SAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSS 180 (815)
Q Consensus 109 ~~~~~~p~~~~~~L~~yQ~~~~~~~~~~~~--------~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~ 180 (815)
.+....|..+...|+|||..||+||+.... ..+-||||||.||||||+|+|+|+...+....
T Consensus 656 e~~VqV~rslv~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~k---------- 725 (1567)
T KOG1015|consen 656 EPLVQVHRSLVIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDK---------- 725 (1567)
T ss_pred cchhhccHhHHhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhc----------
Confidence 345666778889999999999999986542 35569999999999999999999888775443
Q ss_pred CCCCccCCccEEEEcChHHHHHHHHHHHHhcCC-C---CcEEEEEeCCCCc-CCc---ccc-cCCCEEEechhhhHHHhh
Q 003502 181 SSTGLLGIKATLVICPVAAVTQWVSEINRFTSV-G---STKVLIYHGSNRE-RSA---KQF-SEFDFVITTYSIIEADYR 251 (815)
Q Consensus 181 ~~~~~~~~~~~LIV~P~~ll~qW~~Ei~~~~~~-~---~~~v~~~~g~~~~-~~~---~~~-~~~~vvi~ty~~l~~~~~ 251 (815)
.+++++|||||.+++.+|.+||.+|.+. . .+.|.-+...++. ... +.| ..-.|.|+.|++++....
T Consensus 726 -----lg~ktaLvV~PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~ 800 (1567)
T KOG1015|consen 726 -----LGFKTALVVCPLNTALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQ 800 (1567)
T ss_pred -----cCCceEEEEcchHHHHHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHHHHhcCCEEEEehHHHHHHhc
Confidence 2568999999999999999999999984 1 2333333333321 111 111 345799999999887521
Q ss_pred hccCCCcccccccCcccchhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003502 252 KHVMPPKQKCQYCGKSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPL 331 (815)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 331 (815)
..- + ...+.+... ...|
T Consensus 801 gr~-------------------------------v----k~rk~ke~f----------------------------~k~l 817 (1567)
T KOG1015|consen 801 GRN-------------------------------V----KSRKLKEIF----------------------------NKAL 817 (1567)
T ss_pred ccc-------------------------------h----hhhHHHHHH----------------------------HHhc
Confidence 100 0 000000000 1125
Q ss_pred ccceeeEEEeecceeccCCCchHHHHHHhhhcCcEEEeeCCCCCCchhhHHHHHHHhccCCCCccccccccccccccCCC
Q 003502 332 HSLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSA 411 (815)
Q Consensus 332 ~~~~~~~vIvDEaH~~kn~~s~~~~~~~~l~~~~r~~LTgTPi~n~~~el~~ll~~L~~~~~~~~~~~~~~~~~~~~~~~ 411 (815)
..-++|+||+||||.+||..|.+++++..+.+.+||+|||||+||++.|+|.|++|+.+.
T Consensus 818 vdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~-------------------- 877 (1567)
T KOG1015|consen 818 VDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKEN-------------------- 877 (1567)
T ss_pred cCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccc--------------------
Confidence 566889999999999999999999999999999999999999999999999999999854
Q ss_pred CCCCCCCCCcchhhhHhhhhcccccccCCCcchhHHH------HHHHHHHhhHhhhhhccCCcccccCCCCeEEEEeecC
Q 003502 412 ECPNCPHNSVRHFCWWNRYVATPIQTHGNSYGGRRAM------ILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDS 485 (815)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ll~~~~lrr~k~~v~~~~~lp~~~~~~~~~~ 485 (815)
+++....|...|.+||+.+.......... .-.++.+|..++-|+-..-+... |||++++++.+.
T Consensus 878 --------lLGs~~EfrNRFvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~--LPPK~eyVi~vr 947 (1567)
T KOG1015|consen 878 --------LLGSIKEFRNRFVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKF--LPPKHEYVIAVR 947 (1567)
T ss_pred --------cccCcHHHHHhhcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccc--CCCceeEEEEEe
Confidence 44556679999999999998877643322 22456778888888776655555 999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHhcCcccccccccccccCCChhhhhhhhhhcCccc
Q 003502 486 LDIREADYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCN 565 (815)
Q Consensus 486 l~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (815)
|++.|..+|+.++. ...........+ .+...++|.....|+++.+||+.+................. ..-.+|.
T Consensus 948 ltelQ~~LYq~yL~-h~~~~G~d~eg~--~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~sedd---m~~fi~D 1021 (1567)
T KOG1015|consen 948 LTELQCKLYQYYLD-HLTGVGNDSEGG--RGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDD---MDEFIAD 1021 (1567)
T ss_pred ccHHHHHHHHHHHh-hccccCCccccc--cchhhhHHHHHHHHHHHhcCCCceeechhhhhhcccccccc---hhccccC
Confidence 99999999998876 222211111111 11356789999999999999998754332222111110000 0011121
Q ss_pred ccCCCCccccCCchhhhhhHh------hhccccCCCCC-------CCCCCC-cccccccCCCCCCCCcccccc-------
Q 003502 566 DLADDPVVTNCGHAFCKACLF------DSSASKFVAKC-------PTCSIP-LTVDFTANEGAGNRTSKTTIK------- 624 (815)
Q Consensus 566 ~~~~~~~~~~~~~~~c~~c~~------~~~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~------- 624 (815)
+..++..-+..+ -.|..... +...+.....- -.-... +........+. .......+.
T Consensus 1022 ~sde~e~s~~s~-d~~~~~ks~~~s~~Desss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~-~~D~~l~ll~dlag~~ 1099 (1567)
T KOG1015|consen 1022 DSDETEMSLSSD-DYTKKKKSGKKSKKDESSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGN-NPDVSLKLLEDLAGSS 1099 (1567)
T ss_pred CCcccccccccc-chhhcccccccccccccccccccCCchhhhhhhhhhccccccCcccccCC-CcchHHHHhhcccccc
Confidence 111111101000 01111110 00000000000 000000 00000000000 000000000
Q ss_pred ---Ccc----ccchhhhhhccccCcchHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHh-------------
Q 003502 625 ---GFK----SSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK------------- 684 (815)
Q Consensus 625 ---~~~----~~~~~~~~~~~~~~~s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~------------- 684 (815)
... ...++.......+..|+||-.|+++|+.+ +.-|.|+|||||...++++|+.+|..
T Consensus 1100 s~~~d~ppew~kd~v~e~d~~v~~~SgKmiLLleIL~mc--eeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~ 1177 (1567)
T KOG1015|consen 1100 SNPSDPPPEWYKDFVTEADAEVLEHSGKMILLLEILRMC--EEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPL 1177 (1567)
T ss_pred cCCCCCchHhHHhhhhhhhhhhhhcCcceehHHHHHHHH--HHhcceeEEeecccchhHHHHHHHHhhcccCcccccccc
Confidence 000 01233444456677899999999999988 44569999999999999999999984
Q ss_pred ---------CCCcEEEEecCCCHHHHHHHHHhhcCC--CCceEEEEecCCCcccccccccCEEEEeCCCCCcchHHHHhH
Q 003502 685 ---------SGVNCVQLVGSMSIPARDAAINRFTED--PDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQD 753 (815)
Q Consensus 685 ---------~g~~~~~i~G~~~~~~R~~~i~~F~~~--~~~~vlL~st~~g~~GlNL~~a~~vI~~d~~wnp~~~~Qaig 753 (815)
.|..|.+|+|+++..+|++...+||+. -..++|||||+||+.||||..||+|||||-.|||+.+.|+|-
T Consensus 1178 ~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIF 1257 (1567)
T KOG1015|consen 1178 IYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIF 1257 (1567)
T ss_pred ccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHH
Confidence 267899999999999999999999984 346789999999999999999999999999999999999999
Q ss_pred hhhcCCCCCcEEEEEEEeCCcHHHHHHHHHHHHHHHhhhhcCCCcccccCCCHHHHHhhhc
Q 003502 754 RIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFGKLTEADMRFLFV 814 (815)
Q Consensus 754 R~~R~GQ~~~V~vy~l~~~~TiEe~i~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 814 (815)
|+||+||++||+||||++.||+||+||.+|..|+.+.-.+++.. .+-...+.+||..||.
T Consensus 1258 RvyRfGQtKPvyiYRfiAqGTmEeKIYkRQVTKqsls~RVVDeq-Qv~Rhy~~neLteLy~ 1317 (1567)
T KOG1015|consen 1258 RVYRFGQTKPVYIYRFIAQGTMEEKIYKRQVTKQSLSFRVVDEQ-QVERHYTMNELTELYT 1317 (1567)
T ss_pred HHHhhcCcCceeehhhhhcccHHHHHHHHHHhHhhhhhhhhhHH-HHHHHhhHhhhHHHhh
Confidence 99999999999999999999999999999999999998888633 3345678888888874
No 13
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.4e-72 Score=612.53 Aligned_cols=474 Identities=30% Similarity=0.494 Sum_probs=390.9
Q ss_pred ccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHH
Q 003502 120 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA 199 (815)
Q Consensus 120 ~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~l 199 (815)
..|++||+.|++||........ +||||||||||||+|+|++|.++.+.... .+|.|||||.++
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnL-NGILADEMGLGKTIQtIsLitYLmE~K~~----------------~GP~LvivPlst 455 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNL-NGILADEMGLGKTIQTISLITYLMEHKQM----------------QGPFLIIVPLST 455 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCc-ccccchhcccchHHHHHHHHHHHHHHccc----------------CCCeEEeccccc
Confidence 4699999999999999877775 89999999999999999999999887654 379999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEeCCCCcCCc----ccccCCCEEEechhhhHHHhhhccCCCcccccccCcccchhhhhh
Q 003502 200 VTQWVSEINRFTSVGSTKVLIYHGSNRERSA----KQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVV 275 (815)
Q Consensus 200 l~qW~~Ei~~~~~~~~~~v~~~~g~~~~~~~----~~~~~~~vvi~ty~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (815)
+.+|..||.+|.| .+..++|.|....+.. .....|+|++|||+-+-++
T Consensus 456 L~NW~~Ef~kWaP--Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiikd-------------------------- 507 (1157)
T KOG0386|consen 456 LVNWSSEFPKWAP--SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIKD-------------------------- 507 (1157)
T ss_pred cCCchhhcccccc--ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcCC--------------------------
Confidence 9999999999998 8999999998765532 1237899999999987543
Q ss_pred hhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceeeEEEeecceeccCCCchHH
Q 003502 276 HLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNTA 355 (815)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~~~ 355 (815)
++.|..+.|.++||||+|++||..++.+
T Consensus 508 ----------------------------------------------------k~lLsKI~W~yMIIDEGHRmKNa~~KLt 535 (1157)
T KOG0386|consen 508 ----------------------------------------------------KALLSKISWKYMIIDEGHRMKNAICKLT 535 (1157)
T ss_pred ----------------------------------------------------HHHHhccCCcceeecccccccchhhHHH
Confidence 2347888999999999999999999999
Q ss_pred HHHH-hhhcCcEEEeeCCCCCCchhhHHHHHHHhccCCCCccccccccccccccCCCCCCCCCCCCcchhhhHhhhhccc
Q 003502 356 KAVL-ALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATP 434 (815)
Q Consensus 356 ~~~~-~l~~~~r~~LTgTPi~n~~~el~~ll~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (815)
..+. ...+.+|++|||||+||++.|||+||+||-|..|.. -..|..+|..|
T Consensus 536 ~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS----------------------------~~~FeqWFN~P 587 (1157)
T KOG0386|consen 536 DTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNS----------------------------CKAFEQWFNQP 587 (1157)
T ss_pred HHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhh----------------------------HhHHHHHhhhh
Confidence 8888 568999999999999999999999999998877632 23466666777
Q ss_pred ccccCC----CcchhHHHHHHHHHHhhHhhhhhccCCcccccCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 003502 435 IQTHGN----SYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQ 510 (815)
Q Consensus 435 ~~~~~~----~~~~~~~~~~~~~~ll~~~~lrr~k~~v~~~~~lp~~~~~~~~~~l~~~~~~~y~~l~~~~~~~~~~~~~ 510 (815)
+...|. .....-....+++.+++||++||.+++|... +|.+++.++.|.|+..|+.+|..+.+.-.-...
T Consensus 588 FantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~--LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d---- 661 (1157)
T KOG0386|consen 588 FANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQE--LPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKD---- 661 (1157)
T ss_pred hhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhhh--CchhhhHhhheehhhhhHhhhHHHHhCCCCCcC----
Confidence 776663 1123344566789999999999999999877 899999999999999999999887643221111
Q ss_pred hcccccchHHHHHHHHHHHHHhcCcccccccccccccCCChhhhhhhhhhcCcccccCCCCccccCCchhhhhhHhhhcc
Q 003502 511 AGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSA 590 (815)
Q Consensus 511 ~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~ 590 (815)
.......+..+++.++.||++|+||+++..... .|..+.+.
T Consensus 662 ~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~----------------~~~~~~~~----------------------- 702 (1157)
T KOG0386|consen 662 TAKGKKGYKPLFNTIMQLRKLCNHPYLFANVEN----------------SYTLHYDI----------------------- 702 (1157)
T ss_pred chhccccchhhhhHhHHHHHhcCCchhhhhhcc----------------ccccccCh-----------------------
Confidence 112344567789999999999999999831110 00000000
Q ss_pred ccCCCCCCCCCCCcccccccCCCCCCCCccccccCccccchhhhhhccccCcchHHHHHHHHHHHHHhcCCCceEEEEcc
Q 003502 591 SKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQ 670 (815)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~~l~~~~~~~~~~KvIIFs~ 670 (815)
...+..+.|+..|-.+|-++.+ .||+||.|+|
T Consensus 703 ----------------------------------------------~dL~R~sGKfELLDRiLPKLka--tgHRVLlF~q 734 (1157)
T KOG0386|consen 703 ----------------------------------------------KDLVRVSGKFELLDRILPKLKA--TGHRVLLFSQ 734 (1157)
T ss_pred ----------------------------------------------hHHHHhccHHHHHHhhhHHHHh--cCcchhhHHH
Confidence 1223457899999888888855 4599999999
Q ss_pred ChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcC-CCCceEEEEecCCCcccccccccCEEEEeCCCCCcchHH
Q 003502 671 FTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTE-DPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQ 749 (815)
Q Consensus 671 ~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~-~~~~~vlL~st~~g~~GlNL~~a~~vI~~d~~wnp~~~~ 749 (815)
++..+++++++|...+++|.++||+++.++|..++..||. ++.+++||+||++||.|+|||.|++||+||++|||..+.
T Consensus 735 MTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~ 814 (1157)
T KOG0386|consen 735 MTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDL 814 (1157)
T ss_pred HHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHH
Confidence 9999999999999999999999999999999999999998 678999999999999999999999999999999999999
Q ss_pred HHhHhhhcCCCCCcEEEEEEEeCCcHHHHHHHHHHHHHHHhhhhcCCCccccc-CCCHHHHHhhh
Q 003502 750 QAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFG-KLTEADMRFLF 813 (815)
Q Consensus 750 QaigR~~R~GQ~~~V~vy~l~~~~TiEe~i~~~~~~K~~~~~~~~~~~~~~~~-~~~~~~~~~l~ 813 (815)
||.+|||||||+++|.|+||++.+++||.|+..+..|..+-..+...+ .+. +-+.++-++++
T Consensus 815 qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~Kl~~d~kviqag--~fdn~st~~eR~~~L 877 (1157)
T KOG0386|consen 815 QAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYKLDVDGKVIQAG--KFDNKSTAEEREMFL 877 (1157)
T ss_pred HHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHhcCchHhhhhcc--cccCCCcHHHHHHHH
Confidence 999999999999999999999999999999999999988877766432 222 23445544444
No 14
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=2.8e-67 Score=583.68 Aligned_cols=529 Identities=38% Similarity=0.626 Sum_probs=445.6
Q ss_pred HHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHHHHHH
Q 003502 124 RYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQW 203 (815)
Q Consensus 124 ~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~ll~qW 203 (815)
.+|..+..|+.....+..+|||+||+||+|||+++|+++......... ..+....+.+|||||.+++.||
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~----------~~~~~~~kttLivcp~s~~~qW 204 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKE----------EDRQKEFKTTLIVCPTSLLTQW 204 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcc----------hhhccccCceeEecchHHHHHH
Confidence 666666666666666777899999999999999999999877644330 1122345799999999999999
Q ss_pred HHHHHHhcCCCCcEEEEEeCCCCcCCcccccCCCEEEechhhhHHHhhhccCCCcccccccCcccchhhhhhhhhhccCC
Q 003502 204 VSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVVHLKYFCGP 283 (815)
Q Consensus 204 ~~Ei~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~vvi~ty~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (815)
..|+.+...++.+.+++|+| +......+..+|||||||.++..
T Consensus 205 ~~elek~~~~~~l~v~v~~g--r~kd~~el~~~dVVltTy~il~~----------------------------------- 247 (674)
T KOG1001|consen 205 KTELEKVTEEDKLSIYVYHG--RTKDKSELNSYDVVLTTYDILKN----------------------------------- 247 (674)
T ss_pred HHHHhccCCccceEEEEecc--cccccchhcCCceEEeeHHHhhc-----------------------------------
Confidence 99998888888999999999 66667778999999999999853
Q ss_pred cchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceeeEEEeecceeccCCCchHHHHHHhhhc
Q 003502 284 SAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNTAKAVLALES 363 (815)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~~~~~~~~l~~ 363 (815)
+++..+.|-+||+||||.++|.+++.++++..|.+
T Consensus 248 ---------------------------------------------~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a 282 (674)
T KOG1001|consen 248 ---------------------------------------------SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDA 282 (674)
T ss_pred ---------------------------------------------ccccceeEEEEEeccccccCCcchHhhhhheeecc
Confidence 33777899999999999999999999999999999
Q ss_pred CcEEEeeCCCCCCchhhHHHHHHHhccCCCCccccccccccccccCCCCCCCCCCCCcchhhhHhhhhcccccccCCCcc
Q 003502 364 SYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNSYG 443 (815)
Q Consensus 364 ~~r~~LTgTPi~n~~~el~~ll~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (815)
.+||+|||||+||++.|+|++++|+..+||..+ .+|...+..|+..+.+
T Consensus 283 ~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~----------------------------~~~~~~i~~p~~~~~~--- 331 (674)
T KOG1001|consen 283 KYRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQ----------------------------NYFKLLIQDPDERNKY--- 331 (674)
T ss_pred ceeeeecCChhhhhHHHHHHHHHHhhcCCchhh----------------------------HHHHHHhcChhhhhhH---
Confidence 999999999999999999999999998887543 4677777777765543
Q ss_pred hhHHHHHHHHHHhhHhhhhhccCCc---ccccCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHhcccccchHH
Q 003502 444 GRRAMILLKHKVLRSVILRRTKKGR---AADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGTVMNNYAH 520 (815)
Q Consensus 444 ~~~~~~~~~~~ll~~~~lrr~k~~v---~~~~~lp~~~~~~~~~~l~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~ 520 (815)
......++.++..+++||+|... .+.+.+||+.+.+..+.++..++.+|..+......++..+...+....++..
T Consensus 332 --~~~~k~l~~~L~~v~lrrtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~ 409 (674)
T KOG1001|consen 332 --KEGVKTLQGILKKVMLRRTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAF 409 (674)
T ss_pred --HHHHHHHHHHHHHHHhcccccccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHH
Confidence 34455667899999999998743 2345799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcccccccccccccCCChh----hhhhhh---hhcCcccccCCCCccccCCchhhhhhHhhhccccC
Q 003502 521 IFDLLTRLRQAVDHPYLVVYSKTASLRGETEA----DAEHVQ---QVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKF 593 (815)
Q Consensus 521 ~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~ 593 (815)
++..+.+||++|+||.++.............. ..-... ..|.+|.+ .+.++++.|+|.+|..|+........
T Consensus 410 ~l~~lLrlrq~c~h~~lv~~~~~~~~~~~~~~~~~~~~i~~l~~~~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~ 488 (674)
T KOG1001|consen 410 FLKNLLRLRQACDHSLLVMYEMDSLGDSGSAAALIIRLIVDLSVSHWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSE 488 (674)
T ss_pred HHHHHHHHHHHccchHhhhhhhhccccccccchHHHHHHHHHhhccccccccc-cccceeecccchHHHHHHHhcccccc
Confidence 99999999999999999876544333222111 111111 67999999 88899999999999999999999888
Q ss_pred CCCCCCCCCCcccccccCCCCCCCCccccccCccccchhhhhhccccCcchHHHHHHHHHHHHHhcCCCceEEEEccChh
Q 003502 594 VAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTS 673 (815)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~ 673 (815)
...||.|+..+................. ....|.|+.++...|...-.... .|+|||+|++.
T Consensus 489 ~~~~~~cr~~l~~~~l~s~~~~~~~~~~-----------------~~~~s~ki~~~~~~l~~~~~s~~-~kiiifsq~~~ 550 (674)
T KOG1001|consen 489 NAPCPLCRNVLKEKKLLSANPLPSIIND-----------------LLPESSKIYAFLKILQAKEMSEQ-PKIVIFSQLIW 550 (674)
T ss_pred CCCCcHHHHHHHHHHHhhcccccchhhh-----------------ccchhhhhHHHHHHHhhccCCCC-CceeeehhHHH
Confidence 8899999987765433221111111000 00158899999999984322223 59999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEeCCCCCcchHHHHhH
Q 003502 674 FLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQD 753 (815)
Q Consensus 674 ~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~~d~~wnp~~~~Qaig 753 (815)
+++++...|...|+.+.+++|.++..+|.+.+..|..++...|+++|.+||+.||||+.|+|||++||+|||..++|||.
T Consensus 551 ~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaid 630 (674)
T KOG1001|consen 551 GLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAID 630 (674)
T ss_pred HHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCcEEEEEEEeCCcHHHHHHHHHHHHHHHhhhhcCC
Q 003502 754 RIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGG 796 (815)
Q Consensus 754 R~~R~GQ~~~V~vy~l~~~~TiEe~i~~~~~~K~~~~~~~~~~ 796 (815)
||||+||+++|.|++|++.+|+||+|+.+|++|+.+...+++.
T Consensus 631 R~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~~~~~a~~~ 673 (674)
T KOG1001|consen 631 RAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKREYNASAFGE 673 (674)
T ss_pred HHHHhcccceeeeeeehhhhccHHHHHHHHHHHHHHHhhhccC
Confidence 9999999999999999999999999999999999999888764
No 15
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=2.6e-59 Score=569.95 Aligned_cols=505 Identities=38% Similarity=0.588 Sum_probs=402.6
Q ss_pred CcccccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEc
Q 003502 116 PDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVIC 195 (815)
Q Consensus 116 ~~~~~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~ 195 (815)
..+...|+|||.+|+.|+...+.....||||||+||+|||+|+|+++.+....... ..++.||||
T Consensus 333 ~~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~---------------~~~~~liv~ 397 (866)
T COG0553 333 VDLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKV---------------YLGPALIVV 397 (866)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccC---------------CCCCeEEEe
Confidence 55668899999999999884555555799999999999999999999874433221 136999999
Q ss_pred ChHHHHHHHHHHHHhcCCCCcE-EEEEeCCCCc-----CCcccccC------CCEEEechhhhHHHhhhccCCCcccccc
Q 003502 196 PVAAVTQWVSEINRFTSVGSTK-VLIYHGSNRE-----RSAKQFSE------FDFVITTYSIIEADYRKHVMPPKQKCQY 263 (815)
Q Consensus 196 P~~ll~qW~~Ei~~~~~~~~~~-v~~~~g~~~~-----~~~~~~~~------~~vvi~ty~~l~~~~~~~~~~~~~~~~~ 263 (815)
|.+++.+|.+|+.+|.| .++ +.+++|.... .....+.. ++++++||+.+......
T Consensus 398 p~s~~~nw~~e~~k~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~----------- 464 (866)
T COG0553 398 PASLLSNWKREFEKFAP--DLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVD----------- 464 (866)
T ss_pred cHHHHHHHHHHHhhhCc--cccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhh-----------
Confidence 99999999999999998 577 8999998752 22222322 89999999999873100
Q ss_pred cCcccchhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceeeEEEeec
Q 003502 264 CGKSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDE 343 (815)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIvDE 343 (815)
...+....|+++|+||
T Consensus 465 ----------------------------------------------------------------~~~l~~~~~~~~v~DE 480 (866)
T COG0553 465 ----------------------------------------------------------------HGGLKKIEWDRVVLDE 480 (866)
T ss_pred ----------------------------------------------------------------HHHHhhceeeeeehhh
Confidence 1337788999999999
Q ss_pred ceeccCCCchHHHHHHhhhcCcEEEeeCCCCCCchhhHHHHHH-HhccCCCCccccccccccccccCCCCCCCCCCCCcc
Q 003502 344 AHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVR-FLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVR 422 (815)
Q Consensus 344 aH~~kn~~s~~~~~~~~l~~~~r~~LTgTPi~n~~~el~~ll~-~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (815)
||+++|..+..++++..+++.++++|||||++|++.|||++++ |+.|..++.
T Consensus 481 a~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~--------------------------- 533 (866)
T COG0553 481 AHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGT--------------------------- 533 (866)
T ss_pred HHHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccc---------------------------
Confidence 9999999999999999999999999999999999999999999 998776532
Q ss_pred hhhhHhhhhcccccccCCCcc--hhHHHHHHHHHHhhHhhhhhccCC--cccccCCCCeEEEEeecCCCHHHHHHHHHHH
Q 003502 423 HFCWWNRYVATPIQTHGNSYG--GRRAMILLKHKVLRSVILRRTKKG--RAADLALPPRIVSLRRDSLDIREADYYESLY 498 (815)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~~~lrr~k~~--v~~~~~lp~~~~~~~~~~l~~~~~~~y~~l~ 498 (815)
.+..|...|..++........ ........++.+++++++||++.+ +..+ +|++.+..+.+.++..|..+|..+.
T Consensus 534 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~~~--Lp~k~e~~~~~~l~~~q~~~y~~~~ 611 (866)
T COG0553 534 SFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKLLSPFILRRTKEDVEVLKE--LPPKIEKVLECELSEEQRELYEALL 611 (866)
T ss_pred hHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHhhcccccchhHHHh--CChhhhhhhhhcccHHHHHHHHHHH
Confidence 245677778877776665321 122223335689999999999999 5444 9999999999999999999999998
Q ss_pred H---HHHHHHHHHHHhccc--cc--chHHHHHHHHHHHHHhcCcccccccccccccCCChhhhhhhhhhcCcccccCCCC
Q 003502 499 S---ESQAQFNTYVQAGTV--MN--NYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDP 571 (815)
Q Consensus 499 ~---~~~~~~~~~~~~~~~--~~--~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (815)
. .....+......... .. ....++..++.+|++|+||.++........ +..+.....+.
T Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~--------------~~~~~~~~~~~ 677 (866)
T COG0553 612 EGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQICNHPALVDEGLEATF--------------DRIVLLLREDK 677 (866)
T ss_pred HHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHhccCcccccccccccc--------------chhhhhhhccc
Confidence 8 555554443322211 11 257889999999999999998853310000 00000000000
Q ss_pred ccccCCchhhhhhHhhhccccCCCCCCCCCCCcccccccCCCCCCCCccccccCccccchhhhhhccccCcc-hHHHHHH
Q 003502 572 VVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSS-TKIEALR 650 (815)
Q Consensus 572 ~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~Kl~~l~ 650 (815)
....|. ...+..+ .|+..+.
T Consensus 678 ~~~~~~-----------------------------------------------------------~~~~~~s~~k~~~l~ 698 (866)
T COG0553 678 DFDYLK-----------------------------------------------------------KPLIQLSKGKLQALD 698 (866)
T ss_pred cccccc-----------------------------------------------------------chhhhccchHHHHHH
Confidence 000000 1112335 7899999
Q ss_pred HHH-HHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCccccc
Q 003502 651 EEI-RFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALN 729 (815)
Q Consensus 651 ~~l-~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlN 729 (815)
++| ......+..+|+|||+||+.++++|+..|...++.+++++|+++..+|+.++++|+++++..||++|+++||.|||
T Consensus 699 ~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~gln 778 (866)
T COG0553 699 ELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLN 778 (866)
T ss_pred HHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEeccccccee
Confidence 999 6665544213999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred ccccCEEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeCCcHHHHHHHHHHHHHHHhhhhcCC-CcccccCCCHHH
Q 003502 730 LTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGG-SADAFGKLTEAD 808 (815)
Q Consensus 730 L~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~TiEe~i~~~~~~K~~~~~~~~~~-~~~~~~~~~~~~ 808 (815)
|+.|++||+|||+|||+.+.||++|+||+||+++|.||+|++.||+||+|++++..|..+...++++ +......++.++
T Consensus 779 Lt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~~ 858 (866)
T COG0553 779 LTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDAEGEKELSKLSIED 858 (866)
T ss_pred ecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhhhcccchhhccHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999996 778888999999
Q ss_pred HHhhhc
Q 003502 809 MRFLFV 814 (815)
Q Consensus 809 ~~~l~~ 814 (815)
+..||.
T Consensus 859 ~~~l~~ 864 (866)
T COG0553 859 LLDLFS 864 (866)
T ss_pred HHHHhc
Confidence 999985
No 16
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=2.5e-57 Score=458.05 Aligned_cols=426 Identities=26% Similarity=0.379 Sum_probs=317.3
Q ss_pred CCcccccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEE
Q 003502 115 PPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVI 194 (815)
Q Consensus 115 p~~~~~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV 194 (815)
|+.+...|.|||++|+.+++.+ ++.++||||||||||+|||+++.+++.. .|.|||
T Consensus 192 d~kLvs~LlPFQreGv~faL~R----gGR~llADeMGLGKTiQAlaIA~yyraE--------------------wplliV 247 (689)
T KOG1000|consen 192 DPKLVSRLLPFQREGVIFALER----GGRILLADEMGLGKTIQALAIARYYRAE--------------------WPLLIV 247 (689)
T ss_pred CHHHHHhhCchhhhhHHHHHhc----CCeEEEecccccchHHHHHHHHHHHhhc--------------------CcEEEE
Confidence 6677888999999999998875 2456999999999999999999988754 488999
Q ss_pred cChHHHHHHHHHHHHhcCCCCcEEEEEeCCCCcCCcccccCCCEEEechhhhHHHhhhccCCCcccccccCcccchhhhh
Q 003502 195 CPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLV 274 (815)
Q Consensus 195 ~P~~ll~qW~~Ei~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~vvi~ty~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (815)
||+++...|.+++.+|+|.... +.+..+.... .+..-....|.|+||+++......
T Consensus 248 cPAsvrftWa~al~r~lps~~p-i~vv~~~~D~-~~~~~t~~~v~ivSye~ls~l~~~---------------------- 303 (689)
T KOG1000|consen 248 CPASVRFTWAKALNRFLPSIHP-IFVVDKSSDP-LPDVCTSNTVAIVSYEQLSLLHDI---------------------- 303 (689)
T ss_pred ecHHHhHHHHHHHHHhcccccc-eEEEecccCC-ccccccCCeEEEEEHHHHHHHHHH----------------------
Confidence 9999999999999999995333 4443333221 111123346899999998764221
Q ss_pred hhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceeeEEEeecceeccCCCchH
Q 003502 275 VHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNT 354 (815)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~~ 354 (815)
|..-.|..||+||+|++|+..++.
T Consensus 304 --------------------------------------------------------l~~~~~~vvI~DEsH~Lk~sktkr 327 (689)
T KOG1000|consen 304 --------------------------------------------------------LKKEKYRVVIFDESHMLKDSKTKR 327 (689)
T ss_pred --------------------------------------------------------HhcccceEEEEechhhhhccchhh
Confidence 444569999999999999999999
Q ss_pred HHHHHhh--hcCcEEEeeCCCCCCchhhHHHHHHHhccCCCCccccc---cccccccccCCCCCCCCCCCCcchhhhHhh
Q 003502 355 AKAVLAL--ESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCK---DCDCKVLDYSSAECPNCPHNSVRHFCWWNR 429 (815)
Q Consensus 355 ~~~~~~l--~~~~r~~LTgTPi~n~~~el~~ll~~L~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (815)
.+++..+ .+.+.++|||||.-.++.|||.+++.+++..|.++..+ +|+.+..++.
T Consensus 328 ~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~-------------------- 387 (689)
T KOG1000|consen 328 TKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFC-------------------- 387 (689)
T ss_pred hhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCcccccee--------------------
Confidence 8888877 68888999999999999999999999987776554221 2332222211
Q ss_pred hhcccccccCCCcchhHHHHHHHHHHhhHhhhhhccCCcccccCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHH
Q 003502 430 YVATPIQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYV 509 (815)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~lrr~k~~v~~~~~lp~~~~~~~~~~l~~~~~~~y~~l~~~~~~~~~~~~ 509 (815)
..+.+......+..-+...+|+||+|.+|... |||+.-.++. .....+-..-+.+....... .
T Consensus 388 ----------~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~q--LPpKrr~Vv~-~~~gr~da~~~~lv~~a~~~----t 450 (689)
T KOG1000|consen 388 ----------FDYKGCTNLEELAALLFKRLMIRRLKADVLKQ--LPPKRREVVY-VSGGRIDARMDDLVKAAADY----T 450 (689)
T ss_pred ----------eecCCCCCHHHHHHHHHHHHHHHHHHHHHHhh--CCccceEEEE-EcCCccchHHHHHHHHhhhc----c
Confidence 00111111222223355678999999999887 7776433333 22332222222222221110 0
Q ss_pred HhcccccchHHHHHHHHHHHHHhcCcccccccccccccCCChhhhhhhhhhcCcccccCCCCccccCCchhhhhhHhhhc
Q 003502 510 QAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSS 589 (815)
Q Consensus 510 ~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~ 589 (815)
...... .+-..+++..++
T Consensus 451 ~~~~~e---~~~~~l~l~y~~----------------------------------------------------------- 468 (689)
T KOG1000|consen 451 KVNSME---RKHESLLLFYSL----------------------------------------------------------- 468 (689)
T ss_pred hhhhhh---hhhHHHHHHHHH-----------------------------------------------------------
Confidence 000000 000001111110
Q ss_pred cccCCCCCCCCCCCcccccccCCCCCCCCccccccCccccchhhhhhccccCcchHHHHHHHHHHH--HHhcCCCceEEE
Q 003502 590 ASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRF--MVERDGSAKGIV 667 (815)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~~l~~--~~~~~~~~KvII 667 (815)
..-.|+.++.+.|.. ++-..++.|++|
T Consensus 469 ---------------------------------------------------tgiaK~~av~eyi~~~~~l~d~~~~KflV 497 (689)
T KOG1000|consen 469 ---------------------------------------------------TGIAKAAAVCEYILENYFLPDAPPRKFLV 497 (689)
T ss_pred ---------------------------------------------------hcccccHHHHHHHHhCcccccCCCceEEE
Confidence 124577777777765 223456799999
Q ss_pred EccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEeCCCCCcch
Q 003502 668 FSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAV 747 (815)
Q Consensus 668 Fs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~~d~~wnp~~ 747 (815)
|+.+..+++-|+.++.+.++...+|+|+++...|+.+++.|+.+.++.|-++|..++|.||+|+.|+.|+|.+++|||..
T Consensus 498 FaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgv 577 (689)
T KOG1000|consen 498 FAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGV 577 (689)
T ss_pred EehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCce
Confidence 99999999999999999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred HHHHhHhhhcCCCCCcEEEEEEEeCCcHHHHHHHHHHHHHHHhhhhc
Q 003502 748 EQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTV 794 (815)
Q Consensus 748 ~~QaigR~~R~GQ~~~V~vy~l~~~~TiEe~i~~~~~~K~~~~~~~~ 794 (815)
..||.+|+||+||+..|.||+|+++||+||.+|..+..|.+.+..+-
T Consensus 578 LlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~g 624 (689)
T KOG1000|consen 578 LLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSVG 624 (689)
T ss_pred EEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999987663
No 17
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=4.5e-57 Score=520.99 Aligned_cols=469 Identities=19% Similarity=0.229 Sum_probs=324.4
Q ss_pred cccccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcC
Q 003502 117 DLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP 196 (815)
Q Consensus 117 ~~~~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P 196 (815)
+....|.|||+..+.+++... ..+.|||||||||||++|++++..+...+. .+++|||||
T Consensus 148 ~~~~~l~pHQl~~~~~vl~~~---~~R~LLADEvGLGKTIeAglil~~l~~~g~-----------------~~rvLIVvP 207 (956)
T PRK04914 148 GARASLIPHQLYIAHEVGRRH---APRVLLADEVGLGKTIEAGMIIHQQLLTGR-----------------AERVLILVP 207 (956)
T ss_pred cCCCCCCHHHHHHHHHHhhcc---CCCEEEEeCCcCcHHHHHHHHHHHHHHcCC-----------------CCcEEEEcC
Confidence 345779999999987765542 357899999999999999888777654432 269999999
Q ss_pred hHHHHHHHHHHHHhcCCCCcEEEEEeCCCCc----CCcccccCCCEEEechhhhHHHhhhccCCCcccccccCcccchhh
Q 003502 197 VAAVTQWVSEINRFTSVGSTKVLIYHGSNRE----RSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKK 272 (815)
Q Consensus 197 ~~ll~qW~~Ei~~~~~~~~~~v~~~~g~~~~----~~~~~~~~~~vvi~ty~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (815)
++|+.||..|+.+++. +.+.++.+..-. .....+..++++|+||+.+...-..
T Consensus 208 ~sL~~QW~~El~~kF~---l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~-------------------- 264 (956)
T PRK04914 208 ETLQHQWLVEMLRRFN---LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQR-------------------- 264 (956)
T ss_pred HHHHHHHHHHHHHHhC---CCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHH--------------------
Confidence 9999999999988775 455566554211 1113345678999999998753110
Q ss_pred hhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceeeEEEeecceeccCC--
Q 003502 273 LVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDR-- 350 (815)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~-- 350 (815)
...+....|++|||||||++++.
T Consensus 265 -------------------------------------------------------~~~l~~~~wdlvIvDEAH~lk~~~~ 289 (956)
T PRK04914 265 -------------------------------------------------------LEQALAAEWDLLVVDEAHHLVWSEE 289 (956)
T ss_pred -------------------------------------------------------HHHHhhcCCCEEEEechhhhccCCC
Confidence 01144558999999999999963
Q ss_pred -CchHHHHHHhh--hcCcEEEeeCCCCCCchhhHHHHHHHhccCCCCccccccccccccc-c---CCCCCCCCCCCCcch
Q 003502 351 -RSNTAKAVLAL--ESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLD-Y---SSAECPNCPHNSVRH 423 (815)
Q Consensus 351 -~s~~~~~~~~l--~~~~r~~LTgTPi~n~~~el~~ll~~L~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~ 423 (815)
.|..++.+..+ +++++++|||||++|+..|+|++++||+|..|.++..+........ . -........ .....
T Consensus 290 ~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~-~~~~~ 368 (956)
T PRK04914 290 APSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEK-LSDDA 368 (956)
T ss_pred CcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCc-CCHHH
Confidence 36678888877 5789999999999999999999999999999877643321000000 0 000000000 00000
Q ss_pred hhhHhhhhcc--------cccccCCCcchhHHHHHHHHHH-----hhHhhhhhccCCcccccCCCCeEEEEeecCCCHHH
Q 003502 424 FCWWNRYVAT--------PIQTHGNSYGGRRAMILLKHKV-----LRSVILRRTKKGRAADLALPPRIVSLRRDSLDIRE 490 (815)
Q Consensus 424 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l-----l~~~~lrr~k~~v~~~~~lp~~~~~~~~~~l~~~~ 490 (815)
.......+.. .+..... ............+ .+.+|+|+++.++.. +|.+....+.+++++..
T Consensus 369 ~~~l~~ll~~~~~~~l~~~~~~~~~--~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~---fp~R~~~~~~l~~~~~y 443 (956)
T PRK04914 369 LNALGELLGEQDIEPLLQAANSDSE--EAQAARQELISELLDRHGTGRVLFRNTRAAVKG---FPKRELHPIPLPLPEQY 443 (956)
T ss_pred HHHHHHHhcccchhHHHhhhccccc--ccHHHHHHHHHHHHhhcCcceEEEeccHHhhcC---CCcCceeEeecCCCHHH
Confidence 0001111100 0000000 0111111111222 336788999888764 89999999988886643
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHhcCcccccccccccccCCChhhhhhhhhhcCcccccCCC
Q 003502 491 ADYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADD 570 (815)
Q Consensus 491 ~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (815)
...+.. ... ..+++ +.+|..+. ....
T Consensus 444 ~~~~~~---~~~-----------------------~~~~~-~l~pe~~~---------------~~~~------------ 469 (956)
T PRK04914 444 QTAIKV---SLE-----------------------ARARD-MLYPEQIY---------------QEFE------------ 469 (956)
T ss_pred HHHHHH---hHH-----------------------HHHHh-hcCHHHHH---------------HHHh------------
Confidence 332211 000 00111 11110000 0000
Q ss_pred CccccCCchhhhhhHhhhccccCCCCCCCCCCCcccccccCCCCCCCCccccccCccccchhhhhhccccCcchHHHHHH
Q 003502 571 PVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALR 650 (815)
Q Consensus 571 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~ 650 (815)
.....+..++|+..|+
T Consensus 470 ----------------------------------------------------------------~~~~~~~~d~Ki~~L~ 485 (956)
T PRK04914 470 ----------------------------------------------------------------DNATWWNFDPRVEWLI 485 (956)
T ss_pred ----------------------------------------------------------------hhhhccccCHHHHHHH
Confidence 0000123478999999
Q ss_pred HHHHHHHhcCCCceEEEEccChhHHHHHHHHH-HhCCCcEEEEecCCCHHHHHHHHHhhcCCC-CceEEEEecCCCcccc
Q 003502 651 EEIRFMVERDGSAKGIVFSQFTSFLDLINYSL-HKSGVNCVQLVGSMSIPARDAAINRFTEDP-DCKIFLMSLKAGGVAL 728 (815)
Q Consensus 651 ~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L-~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~-~~~vlL~st~~g~~Gl 728 (815)
++|+.. .++|+||||++..+++.|.+.| ...|+++..+||+++..+|.++++.|++++ +++||| +|.+||+|+
T Consensus 486 ~~L~~~----~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLI-sTdvgseGl 560 (956)
T PRK04914 486 DFLKSH----RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLL-CSEIGSEGR 560 (956)
T ss_pred HHHHhc----CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEE-echhhccCC
Confidence 988754 3689999999999999999999 567999999999999999999999999853 677766 679999999
Q ss_pred cccccCEEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeCCcHHHHHHHHHHHHHHHhhhhcCCCcccccCCCHHH
Q 003502 729 NLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFGKLTEAD 808 (815)
Q Consensus 729 NL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~TiEe~i~~~~~~K~~~~~~~~~~~~~~~~~~~~~~ 808 (815)
|||+|++||+||+||||..++|||||++|+||+++|.||+++.++|+|+.|++....|..+++.++++......+..++-
T Consensus 561 Nlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~~~v~~~~~~~l 640 (956)
T PRK04914 561 NFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTGRALYDEFGDEL 640 (956)
T ss_pred CcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988777776655544
Q ss_pred HHhh
Q 003502 809 MRFL 812 (815)
Q Consensus 809 ~~~l 812 (815)
...|
T Consensus 641 ~~~l 644 (956)
T PRK04914 641 IPYL 644 (956)
T ss_pred HHHH
Confidence 4444
No 18
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=1.9e-54 Score=455.31 Aligned_cols=583 Identities=22% Similarity=0.265 Sum_probs=386.6
Q ss_pred CCcccccchHHHHHHHHHHHHHhh--------ccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCcc
Q 003502 115 PPDLITPLLRYQKEWLAWALKQEE--------SAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLL 186 (815)
Q Consensus 115 p~~~~~~L~~yQ~~~~~~~~~~~~--------~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~ 186 (815)
.|.+..-+.|||+=|+.||+...- +.+-|||||+.||||||+|+|+|+-..++....
T Consensus 248 apqla~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT~A--------------- 312 (1387)
T KOG1016|consen 248 APQLAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHTKA--------------- 312 (1387)
T ss_pred hhhhHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcCcc---------------
Confidence 345566789999999999876532 334599999999999999999998888766543
Q ss_pred CCccEEEEcChHHHHHHHHHHHHhcCC---------CCcEEEEEeCCCCcCCc-----cc-ccCCCEEEechhhhHHHhh
Q 003502 187 GIKATLVICPVAAVTQWVSEINRFTSV---------GSTKVLIYHGSNRERSA-----KQ-FSEFDFVITTYSIIEADYR 251 (815)
Q Consensus 187 ~~~~~LIV~P~~ll~qW~~Ei~~~~~~---------~~~~v~~~~g~~~~~~~-----~~-~~~~~vvi~ty~~l~~~~~ 251 (815)
+.+|+|+|-..+++|..|+..|+|. ..+.|+++....+.... .. .....|+++.|++++-...
T Consensus 313 --KtVL~ivPiNTlQNWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~l 390 (1387)
T KOG1016|consen 313 --KTVLVIVPINTLQNWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLIL 390 (1387)
T ss_pred --ceEEEEEehHHHHHHHHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHhccCCEEEehHHHHHHHHH
Confidence 7999999999999999999999984 23445554443322111 11 1456799999999876543
Q ss_pred hccCC----CcccccccCcccchhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCC
Q 003502 252 KHVMP----PKQKCQYCGKSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGG 327 (815)
Q Consensus 252 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (815)
+.... .+.. ... ...+..++..... +.. .+-.
T Consensus 391 k~~~~~grpkkt~-kr~------------~~~~i~~d~eD~~----qe~---------------------------~~li 426 (1387)
T KOG1016|consen 391 KTLPKKGRPKKTL-KRI------------SSGFIKDDSEDQR----QEA---------------------------YSLI 426 (1387)
T ss_pred hcccccCCccccc-ccc------------CCcccCCchhhhH----HHH---------------------------HHHH
Confidence 32110 0000 000 0000000000000 000 0001
Q ss_pred CCCCccceeeEEEeecceeccCCCchHHHHHHhhhcCcEEEeeCCCCCCchhhHHHHHHHhccCCCCccccccccccccc
Q 003502 328 KSPLHSLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLD 407 (815)
Q Consensus 328 ~~~l~~~~~~~vIvDEaH~~kn~~s~~~~~~~~l~~~~r~~LTgTPi~n~~~el~~ll~~L~~~~~~~~~~~~~~~~~~~ 407 (815)
.+.|..-+.|+||+||+|+|||..+.++.+++.+++++|++|||-|+||++-|+|.|++|+.|..
T Consensus 427 ~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYwCMVDFVRP~y--------------- 491 (1387)
T KOG1016|consen 427 RSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYWCMVDFVRPKY--------------- 491 (1387)
T ss_pred HHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHhhhheeccccc---------------
Confidence 22366678999999999999999999999999999999999999999999999999999998654
Q ss_pred cCCCCCCCCCCCCcchhhhHhhhhcccccccCCCcchhHH------HHHHHHHHhhHhhhhhccCCcccccCCCCeEEEE
Q 003502 408 YSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNSYGGRRA------MILLKHKVLRSVILRRTKKGRAADLALPPRIVSL 481 (815)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ll~~~~lrr~k~~v~~~~~lp~~~~~~ 481 (815)
++....|...|.+||..+......... ..-.++.++..|+-||+-.-+.. .||.+.+.+
T Consensus 492 -------------LGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~--~LP~k~EyV 556 (1387)
T KOG1016|consen 492 -------------LGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKK--ILPEKKEYV 556 (1387)
T ss_pred -------------cchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhh--hcccccceE
Confidence 455567899999999988766543222 23356778999999998664433 499999999
Q ss_pred eecCCCHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHhcCcccccccccc-cccCCChhhhhh----
Q 003502 482 RRDSLDIREADYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTA-SLRGETEADAEH---- 556 (815)
Q Consensus 482 ~~~~l~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~-~~~~~~~~~~~~---- 556 (815)
+.+.++..|+++|..+.-........ .+ -..-+.+.++.---++.+||..+-.-... ....+.+.+.+.
T Consensus 557 iLvr~s~iQR~LY~~Fm~d~~r~~~~---~~---~~~~NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~~~a 630 (1387)
T KOG1016|consen 557 ILVRKSQIQRQLYRNFMLDAKREIAA---NN---DAVFNPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEMKFA 630 (1387)
T ss_pred EEEeHHHHHHHHHHHHHHHHHHhhcc---cc---ccccChHHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHHhhh
Confidence 99999999999999887544332211 00 00113455555666777999865321111 011111111111
Q ss_pred -hhhhcCcccccCCCCccccCCchhhhhhHhhhccccCCCCCCCCCCCcccccccCCCCCCCCccccccCccccchhhhh
Q 003502 557 -VQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRI 635 (815)
Q Consensus 557 -~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (815)
....|.-.......+...-... ...+......|.-.... ..-. .........+.-.....+..
T Consensus 631 g~~~~~~P~~~~~~~~s~~laSs---------~~k~~n~t~kp~~s~~~--p~f~-----ee~~e~~~y~~w~~el~~nY 694 (1387)
T KOG1016|consen 631 GLQQQQSPFNSIPSNPSTPLASS---------TSKSANKTKKPRGSKKA--PKFD-----EEDEEVEKYSDWTFELFENY 694 (1387)
T ss_pred cccccCCCCCCCCCCCCCcccch---------hhhhhcccCCcccCcCC--CCcc-----cccccccchhhHHHHHHhhh
Confidence 1111211111111110000000 00000000000000000 0000 00000000001111222233
Q ss_pred hccccCcchHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhC------------------CCcEEEEecCCC
Q 003502 636 QLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS------------------GVNCVQLVGSMS 697 (815)
Q Consensus 636 ~~~~~~~s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~------------------g~~~~~i~G~~~ 697 (815)
+.+-...++|+-.+++++..-. .-+.|+|||||....++.|+.+|... ...|++++|.++
T Consensus 695 q~gvLen~pk~V~~~~~~des~--~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~ 772 (1387)
T KOG1016|consen 695 QEGVLENGPKIVISLEILDEST--QIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTS 772 (1387)
T ss_pred hcccccCCCceEEEEeeecccc--ccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcc
Confidence 3344455677777766666543 24689999999999999999999863 355889999999
Q ss_pred HHHHHHHHHhhcCCCCce-EEEEecCCCcccccccccCEEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeCCcHH
Q 003502 698 IPARDAAINRFTEDPDCK-IFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIE 776 (815)
Q Consensus 698 ~~~R~~~i~~F~~~~~~~-vlL~st~~g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~TiE 776 (815)
...|+++|++||..+++. .|++||++|..|+||..||++|+||..|||....||+.|++|+||+|+++|||||+..|+|
T Consensus 773 a~~rekLinqfN~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lE 852 (1387)
T KOG1016|consen 773 AADREKLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLE 852 (1387)
T ss_pred cchHHHHHHhccCCCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhH
Confidence 999999999999987876 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCcccccCCCHHHHHhhh
Q 003502 777 ERILKLQEKKKLVFEGTVGGSADAFGKLTEADMRFLF 813 (815)
Q Consensus 777 e~i~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~l~ 813 (815)
-+||.+|-.|+.|.+.++++- ..-..++..|+..|+
T Consensus 853 kkIydRQIsKqGmsdRvVDd~-np~an~s~Ke~enLl 888 (1387)
T KOG1016|consen 853 KKIYDRQISKQGMSDRVVDDA-NPDANISQKELENLL 888 (1387)
T ss_pred HHHHHHHHhhccchhhhhccc-CccccccHHHHHHHh
Confidence 999999999999999999753 233567888887775
No 19
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=100.00 E-value=7.5e-45 Score=405.91 Aligned_cols=299 Identities=27% Similarity=0.395 Sum_probs=213.4
Q ss_pred CeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 003502 144 GILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHG 223 (815)
Q Consensus 144 ~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~ll~qW~~Ei~~~~~~~~~~v~~~~g 223 (815)
+++|||||+|||...+++....+... .....+.-.+........|+||||||++++.||..||.++++.. ++|+.|.|
T Consensus 377 ~~~ade~~~qk~~~~l~~~l~~~~k~-~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~-lKv~~Y~G 454 (1394)
T KOG0298|consen 377 VQCADEMGWQKTSEKLILELSDLPKL-CPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSL-LKVLLYFG 454 (1394)
T ss_pred eeehhhhhccchHHHHHHHHhccccc-chhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhcccc-ceEEEEec
Confidence 49999999999999988777653211 10000111112233345789999999999999999999999964 79999999
Q ss_pred CCCcC--CcccccCCCEEEechhhhHHHhhhccCCCcccccccCcccchhhhhhhhhhccCCcchhhhhhhHHHHhhhcc
Q 003502 224 SNRER--SAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKS 301 (815)
Q Consensus 224 ~~~~~--~~~~~~~~~vvi~ty~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (815)
-.+.. .+..+..||||+|||++|+.++...- +.+++.
T Consensus 455 irk~~~~~~~el~~yDIVlTtYdiLr~El~hte-------------------------~~~~~R---------------- 493 (1394)
T KOG0298|consen 455 IRKTFWLSPFELLQYDIVLTTYDILRNELYHTE-------------------------DFGSDR---------------- 493 (1394)
T ss_pred hhhhcccCchhhhccCEEEeehHHHHhHhhccc-------------------------ccCChh----------------
Confidence 75543 23567899999999999999865420 001100
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceeeEEEeecceeccCCCchHHHHHHhhhcCcEEEeeCCCCCCchhhH
Q 003502 302 SVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGEL 381 (815)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~~~~~~~~l~~~~r~~LTgTPi~n~~~el 381 (815)
...-.++.....++|..+.|.+||||||+.+....|..++++..|.+.++|++||||+++ +.||
T Consensus 494 ---------------~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl 557 (1394)
T KOG0298|consen 494 ---------------QLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSSSAAAEMVRRLHAINRWCVTGTPIQK-IDDL 557 (1394)
T ss_pred ---------------hhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchHHHHHHHHHHhhhhceeeecCCchhh-hhhh
Confidence 001112233446889999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhccCCCCccccccccccccccCCCCCCCCCCCCcchhhhHhhhhcccccccCCCcchhHHHHHHHHHHhhHhhh
Q 003502 382 YSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNSYGGRRAMILLKHKVLRSVIL 461 (815)
Q Consensus 382 ~~ll~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l 461 (815)
+.||.||...||... .+|-+.+..++... +.-.....++...+-
T Consensus 558 ~~Ll~fLk~~Pf~~~----------------------------~~~iq~v~~~~~~r--------a~~~~~~dl~~q~l~ 601 (1394)
T KOG0298|consen 558 FPLLEFLKLPPFCRP----------------------------QDFIQTVDKAYQLR--------AKCEPLLDLFKQLLW 601 (1394)
T ss_pred HHHHHHhcCCCCCCh----------------------------HHHHHHHHHHHHHH--------hhhhhHHHHHHhhhh
Confidence 999999998887432 34555554443321 112233568888999
Q ss_pred hhccCCcccccCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHH----HHHHHHhcc---------cccchHHHHHHHHHH
Q 003502 462 RRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQ----FNTYVQAGT---------VMNNYAHIFDLLTRL 528 (815)
Q Consensus 462 rr~k~~v~~~~~lp~~~~~~~~~~l~~~~~~~y~~l~~~~~~~----~~~~~~~~~---------~~~~~~~~~~~l~~l 528 (815)
|+.+.+|...+.+||....+....+++.+..+|+..+...... +........ .....+.++..+.+|
T Consensus 602 R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~~a~i~~~l~rL 681 (1394)
T KOG0298|consen 602 RTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQLLAIILKWLLRL 681 (1394)
T ss_pred hhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhhHHHHHHHHHHH
Confidence 9999999999999999887888888887777766544333333 222221111 111246678899999
Q ss_pred HHHhcCccc
Q 003502 529 RQAVDHPYL 537 (815)
Q Consensus 529 r~~~~~p~l 537 (815)
|++|+||..
T Consensus 682 Rq~Cchplv 690 (1394)
T KOG0298|consen 682 RQACCHPLV 690 (1394)
T ss_pred HHhhccccc
Confidence 999999853
No 20
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=7e-42 Score=381.54 Aligned_cols=355 Identities=20% Similarity=0.282 Sum_probs=254.2
Q ss_pred cccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChH
Q 003502 119 ITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVA 198 (815)
Q Consensus 119 ~~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~ 198 (815)
...|||||.+++.++... ...++|||+++||+|||+++++++.... +++|||||..
T Consensus 253 ~~~LRpYQ~eAl~~~~~~--gr~r~GIIvLPtGaGKTlvai~aa~~l~----------------------k~tLILvps~ 308 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGN--GRARSGIIVLPCGAGKSLVGVTAACTVK----------------------KSCLVLCTSA 308 (732)
T ss_pred CCCcCHHHHHHHHHHHhc--CCCCCcEEEeCCCCChHHHHHHHHHHhC----------------------CCEEEEeCcH
Confidence 467999999999998643 1125899999999999999998877543 5899999965
Q ss_pred -HHHHHHHHHHHhcCCCCcEEEEEeCCCCcCCcccccCCCEEEechhhhHHHhhhccCCCcccccccCcccchhhhhhhh
Q 003502 199 -AVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVVHL 277 (815)
Q Consensus 199 -ll~qW~~Ei~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~vvi~ty~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (815)
++.||.+||.+|+......+..|.|..+... .....|+|+||+++.........
T Consensus 309 ~Lv~QW~~ef~~~~~l~~~~I~~~tg~~k~~~---~~~~~VvVtTYq~l~~~~~r~~~---------------------- 363 (732)
T TIGR00603 309 VSVEQWKQQFKMWSTIDDSQICRFTSDAKERF---HGEAGVVVSTYSMVAHTGKRSYE---------------------- 363 (732)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEEecCccccc---ccCCcEEEEEHHHhhcccccchh----------------------
Confidence 5799999999997544567778888654432 23578999999998653211000
Q ss_pred hhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceeeEEEeecceeccCCCchHHHH
Q 003502 278 KYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNTAKA 357 (815)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~~~~~ 357 (815)
.......|....|++||+||||++.+ ....+.
T Consensus 364 ----------------------------------------------~~~~l~~l~~~~~gLII~DEvH~lpA--~~fr~i 395 (732)
T TIGR00603 364 ----------------------------------------------SEKVMEWLTNREWGLILLDEVHVVPA--AMFRRV 395 (732)
T ss_pred ----------------------------------------------hhHHHHHhccccCCEEEEEccccccH--HHHHHH
Confidence 00000124456899999999999954 344446
Q ss_pred HHhhhcCcEEEeeCCCCCCchhhHHHHHHH-hccCCCCccccccccccccccCCCCCCCCCCCCcchhhhHhhhhccccc
Q 003502 358 VLALESSYKWALSGTPLQNRVGELYSLVRF-LQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQ 436 (815)
Q Consensus 358 ~~~l~~~~r~~LTgTPi~n~~~el~~ll~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (815)
+..+.+++||+|||||+.+. +.+..+.+ ++|..|... |.+
T Consensus 396 l~~l~a~~RLGLTATP~ReD--~~~~~L~~LiGP~vye~~------------------------------~~e------- 436 (732)
T TIGR00603 396 LTIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYEAN------------------------------WME------- 436 (732)
T ss_pred HHhcCcCcEEEEeecCcccC--CchhhhhhhcCCeeeecC------------------------------HHH-------
Confidence 66789999999999999765 33333333 444332110 111
Q ss_pred ccCCCcchhHHHHHHHHHHhhHhhhhhccCCcccccCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 003502 437 THGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGTVMN 516 (815)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~ll~~~~lrr~k~~v~~~~~lp~~~~~~~~~~l~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~ 516 (815)
++. ..-+.+..+..++++|++.....|......
T Consensus 437 ------------------Li~-------------~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~---------------- 469 (732)
T TIGR00603 437 ------------------LQK-------------KGFIANVQCAEVWCPMTPEFYREYLRENSR---------------- 469 (732)
T ss_pred ------------------HHh-------------CCccccceEEEEEecCCHHHHHHHHHhcch----------------
Confidence 111 112555666788999998754444211100
Q ss_pred chHHHHHHHHHHHHHhcCcccccccccccccCCChhhhhhhhhhcCcccccCCCCccccCCchhhhhhHhhhccccCCCC
Q 003502 517 NYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAK 596 (815)
Q Consensus 517 ~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~ 596 (815)
... +..+
T Consensus 470 --~k~-------~l~~---------------------------------------------------------------- 476 (732)
T TIGR00603 470 --KRM-------LLYV---------------------------------------------------------------- 476 (732)
T ss_pred --hhh-------HHhh----------------------------------------------------------------
Confidence 000 0000
Q ss_pred CCCCCCCcccccccCCCCCCCCccccccCccccchhhhhhccccCcchHHHHHHHHHHHHHhcCCCceEEEEccChhHHH
Q 003502 597 CPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLD 676 (815)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~ 676 (815)
....|+.++..+|..+ +..++|+||||++...++
T Consensus 477 --------------------------------------------~np~K~~~~~~Li~~h--e~~g~kiLVF~~~~~~l~ 510 (732)
T TIGR00603 477 --------------------------------------------MNPNKFRACQFLIRFH--EQRGDKIIVFSDNVFALK 510 (732)
T ss_pred --------------------------------------------hChHHHHHHHHHHHHH--hhcCCeEEEEeCCHHHHH
Confidence 0145778887777654 245789999999999888
Q ss_pred HHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEeCCCC-CcchHHHHhHhh
Q 003502 677 LINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWW-NPAVEQQAQDRI 755 (815)
Q Consensus 677 ~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~~d~~w-np~~~~QaigR~ 755 (815)
.+...| +. ..|+|.++..+|.+++++|++++.+++|++| ++|++|+||+.|++||++++++ ++..+.||+||+
T Consensus 511 ~~a~~L---~~--~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~S-kVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRi 584 (732)
T TIGR00603 511 EYAIKL---GK--PFIYGPTSQQERMQILQNFQHNPKVNTIFLS-KVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRI 584 (732)
T ss_pred HHHHHc---CC--ceEECCCCHHHHHHHHHHHHhCCCccEEEEe-cccccccCCCCCCEEEEeCCCCCCHHHHHHHhccc
Confidence 887776 33 4589999999999999999987678887755 9999999999999999999986 999999999999
Q ss_pred hcCCCCC-----cEEEEEEEeCCcHHHHHHH
Q 003502 756 HRIGQYK-----PIRIVRFLIENTIEERILK 781 (815)
Q Consensus 756 ~R~GQ~~-----~V~vy~l~~~~TiEe~i~~ 781 (815)
.|.+..+ +.++|.|++.+|.|+....
T Consensus 585 lR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~ 615 (732)
T TIGR00603 585 LRAKKGSDAEEYNAFFYSLVSKDTQEMYYST 615 (732)
T ss_pred ccCCCCCccccccceEEEEecCCchHHHHHH
Confidence 9998654 4899999999999998855
No 21
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=2.1e-41 Score=359.10 Aligned_cols=289 Identities=37% Similarity=0.628 Sum_probs=216.4
Q ss_pred HHHHHHHHHHHHh--------hccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcC
Q 003502 125 YQKEWLAWALKQE--------ESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP 196 (815)
Q Consensus 125 yQ~~~~~~~~~~~--------~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P 196 (815)
||+.|+.||+.++ ....+|||||||||+|||+++++++..+....... ..+++|||||
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~--------------~~~~~LIv~P 66 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQR--------------GEKKTLIVVP 66 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTS--------------S-S-EEEEE-
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccc--------------cccceeEeec
Confidence 8999999999998 55668999999999999999999998665433221 1236999999
Q ss_pred hHHHHHHHHHHHHhcCCCCcEEEEEeCCC--CcCCcccccCCCEEEechhhhHHHhhhccCCCcccccccCcccchhhhh
Q 003502 197 VAAVTQWVSEINRFTSVGSTKVLIYHGSN--RERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLV 274 (815)
Q Consensus 197 ~~ll~qW~~Ei~~~~~~~~~~v~~~~g~~--~~~~~~~~~~~~vvi~ty~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (815)
++++.||..|+.+|+++..++++++.|.. ..........++++|+||+.+......
T Consensus 67 ~~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~---------------------- 124 (299)
T PF00176_consen 67 SSLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKK---------------------- 124 (299)
T ss_dssp TTTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TST----------------------
T ss_pred cchhhhhhhhhccccccccccccccccccccccccccccccceeeecccccccccccc----------------------
Confidence 99999999999999976678999999987 233344567899999999999711000
Q ss_pred hhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceeeEEEeecceeccCCCchH
Q 003502 275 VHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNT 354 (815)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~~ 354 (815)
...+.+...+|++||+||+|.++|..+..
T Consensus 125 ---------------------------------------------------~~~~~l~~~~~~~vIvDEaH~~k~~~s~~ 153 (299)
T PF00176_consen 125 ---------------------------------------------------KDKEDLKQIKWDRVIVDEAHRLKNKDSKR 153 (299)
T ss_dssp ---------------------------------------------------HTTHHHHTSEEEEEEETTGGGGTTTTSHH
T ss_pred ---------------------------------------------------ccccccccccceeEEEecccccccccccc
Confidence 00122566789999999999999999999
Q ss_pred HHHHHhhhcCcEEEeeCCCCCCchhhHHHHHHHhccCCCCccccccccccccccCCCCCCCCCCCCcchhhhHhhhhccc
Q 003502 355 AKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATP 434 (815)
Q Consensus 355 ~~~~~~l~~~~r~~LTgTPi~n~~~el~~ll~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (815)
++++..+.+.++|+|||||++|++.|+|++++||++.++.. ...|.+.+..+
T Consensus 154 ~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~----------------------------~~~f~~~~~~~ 205 (299)
T PF00176_consen 154 YKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSD----------------------------RRSFKKWFYRP 205 (299)
T ss_dssp HHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSS----------------------------HHHHHHHTHHH
T ss_pred cccccccccceEEeeccccccccccccccchheeecccccc----------------------------chhhhhhhhhh
Confidence 99999999999999999999999999999999999877642 23455555333
Q ss_pred ccccCCCcchhHHHHHHHHHHhhHhhhhhccCCcccccCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 003502 435 IQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGTV 514 (815)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~ll~~~~lrr~k~~v~~~~~lp~~~~~~~~~~l~~~~~~~y~~l~~~~~~~~~~~~~~~~~ 514 (815)
...........+..+++.+++|+++.++.. .+|+..+.++.++|++.|+..|+.+.......+.... ...
T Consensus 206 ------~~~~~~~~~~~L~~~l~~~~~r~~~~d~~~--~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~--~~~ 275 (299)
T PF00176_consen 206 ------DKENSYENIERLRELLSEFMIRRTKKDVEK--ELPPKIEHVINVELSPEQRELYNELLKEARENLKQSS--RKK 275 (299)
T ss_dssp ------HHTHHHHHHHHHHHHHCCCEECHCGGGGCT--TSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T----T
T ss_pred ------ccccccccccccccccchhhhhhhcccccc--cCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhc--ccc
Confidence 112234445566789999999999998843 4999999999999999999999987766555433322 234
Q ss_pred ccchHHHHHHHHHHHHHhcCcccc
Q 003502 515 MNNYAHIFDLLTRLRQAVDHPYLV 538 (815)
Q Consensus 515 ~~~~~~~~~~l~~lr~~~~~p~l~ 538 (815)
......++..+.+||++|+||+|+
T Consensus 276 ~~~~~~~~~~~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 276 SKKLSSLLQILKRLRQVCNHPYLV 299 (299)
T ss_dssp CHHHHHHHHHHHHHHHHHH-THHC
T ss_pred hhhHHHHHHHHHHHHHHhCCcccC
Confidence 456778899999999999999874
No 22
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=1.1e-41 Score=372.47 Aligned_cols=378 Identities=26% Similarity=0.430 Sum_probs=297.1
Q ss_pred ccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHH
Q 003502 120 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA 199 (815)
Q Consensus 120 ~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~l 199 (815)
..|.+||.+|++|+...+..+. .+|||||||+|||++++.++..+...... .+|.||++|.+.
T Consensus 294 g~L~~~qleGln~L~~~ws~~~-~~ilADEmgLgktVqsi~fl~sl~~~~~~----------------~~P~Lv~ap~sT 356 (696)
T KOG0383|consen 294 GTLHPYQLEGLNWLRISWSPGV-DAILADEMGLGKTVQSIVFLYSLPKEIHS----------------PGPPLVVAPLST 356 (696)
T ss_pred ccccccchhhhhhhhcccccCC-CcccchhhcCCceeeEEEEEeecccccCC----------------CCCceeeccCcc
Confidence 5699999999999887777764 89999999999999999888877655442 258899999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEeCCCCcCCccccc------------------------CCCEEEechhhhHHHhhhccC
Q 003502 200 VTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFS------------------------EFDFVITTYSIIEADYRKHVM 255 (815)
Q Consensus 200 l~qW~~Ei~~~~~~~~~~v~~~~g~~~~~~~~~~~------------------------~~~vvi~ty~~l~~~~~~~~~ 255 (815)
+-+|.+|+..|.| .+.+..|.|..+.+..-... .+.+.+++|++.
T Consensus 357 ~~nwe~e~~~wap--~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~--------- 425 (696)
T KOG0383|consen 357 IVNWEREFELWAP--SFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETI--------- 425 (696)
T ss_pred ccCCCCchhccCC--CcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhc---------
Confidence 9999999999998 68888899987654321110 112222222222
Q ss_pred CCcccccccCcccchhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccce
Q 003502 256 PPKQKCQYCGKSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLK 335 (815)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 335 (815)
.-..+.+..+.
T Consensus 426 ---------------------------------------------------------------------~~~~~il~~v~ 436 (696)
T KOG0383|consen 426 ---------------------------------------------------------------------EIDQSILFSVQ 436 (696)
T ss_pred ---------------------------------------------------------------------ccCHHHHhhhh
Confidence 22235588999
Q ss_pred eeEEEeecceeccCCCchHHHHHHhhhcCcEEEeeCCCCCCchhhHHHHHHHhccCCCCccccccccccccccCCCCCCC
Q 003502 336 WERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPN 415 (815)
Q Consensus 336 ~~~vIvDEaH~~kn~~s~~~~~~~~l~~~~r~~LTgTPi~n~~~el~~ll~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (815)
|..+|+||+|+++|..|...+.+......++++|||||.+|++.+|+++|+||.+..+...
T Consensus 437 w~~livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~------------------- 497 (696)
T KOG0383|consen 437 WGLLIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSL------------------- 497 (696)
T ss_pred cceeEeechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccch-------------------
Confidence 9999999999999999999999888999999999999999999999999999998776432
Q ss_pred CCCCCcchhhhHhhhhcccccccCCCcchhHHHHHHHHHHhhHhhhhhccCCcccccCCCCeEEEEeecCCCHHHHHHHH
Q 003502 416 CPHNSVRHFCWWNRYVATPIQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYE 495 (815)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~lrr~k~~v~~~~~lp~~~~~~~~~~l~~~~~~~y~ 495 (815)
.+|...|..- .....+..++.++.+.|+||.+.|+... .|.+.+.++.+.+++.|.++|.
T Consensus 498 ---------~~f~e~~~d~---------~~~~~~~~l~~l~~p~~lrr~k~d~l~~--~P~Kte~i~~~~~~~~Q~~~yk 557 (696)
T KOG0383|consen 498 ---------EWFLEEFHDI---------SCEEQIKKLHLLLCPHMLRRLKLDVLKP--MPLKTELIGRVELSPCQKKYYK 557 (696)
T ss_pred ---------hhhhhhcchh---------hHHHHHHhhccccCchhhhhhhhhhccC--CCccceeEEEEecCHHHHHHHH
Confidence 1222222221 1344556668899999999999999876 8999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHhcCcccccccccccccCCChhhhhhhhhhcCcccccCCCCcccc
Q 003502 496 SLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTN 575 (815)
Q Consensus 496 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (815)
.+.......+.. ....-.+++.++.||+.|+||+++...+.... .......
T Consensus 558 ~~~t~n~~~l~~-------~~~~~s~~n~~mel~K~~~hpy~~~~~e~~~~---~~~~~~~------------------- 608 (696)
T KOG0383|consen 558 KILTRNWQGLLA-------GVHQYSLLNIVMELRKQCNHPYLSPLEEPLEE---NGEYLGS------------------- 608 (696)
T ss_pred HHHcCChHHHhh-------cchhHHHHHHHHHHHHhhcCcccCcccccccc---chHHHHH-------------------
Confidence 998776655443 23344677899999999999999865111110 0000000
Q ss_pred CCchhhhhhHhhhccccCCCCCCCCCCCcccccccCCCCCCCCccccccCccccchhhhhhccccCcchHHHHHHHHHHH
Q 003502 576 CGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRF 655 (815)
Q Consensus 576 ~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~~l~~ 655 (815)
.....|.|+..|..++++
T Consensus 609 --------------------------------------------------------------~l~k~~~k~~~l~~~~~~ 626 (696)
T KOG0383|consen 609 --------------------------------------------------------------ALIKASGKLTLLLKMLKK 626 (696)
T ss_pred --------------------------------------------------------------HHHHHHHHHHHHHHHHHH
Confidence 111237788889888888
Q ss_pred HHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcC-CCCceEEEEecCCCccc
Q 003502 656 MVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTE-DPDCKIFLMSLKAGGVA 727 (815)
Q Consensus 656 ~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~-~~~~~vlL~st~~g~~G 727 (815)
+. ..+|||+||+|+..++|+|++++...| .|.+++|..+...|+.++++||. ++.-.|||+||++||.|
T Consensus 627 l~--~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 627 LK--SSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HH--hcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 84 466999999999999999999999999 99999999999999999999995 66788999999999987
No 23
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.9e-35 Score=351.33 Aligned_cols=144 Identities=22% Similarity=0.324 Sum_probs=129.9
Q ss_pred cchHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecC--------CCHHHHHHHHHhhcCCCC
Q 003502 642 SSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGS--------MSIPARDAAINRFTEDPD 713 (815)
Q Consensus 642 ~s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~--------~~~~~R~~~i~~F~~~~~ 713 (815)
.++|+..|.++|...+...++.|+||||++..+++.|.+.|...|+++..++|. ++..+|.+++.+|+++ .
T Consensus 345 ~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g-~ 423 (773)
T PRK13766 345 EHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAG-E 423 (773)
T ss_pred CChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcC-C
Confidence 378999999999998877788999999999999999999999999999999987 8888999999999987 6
Q ss_pred ceEEEEecCCCcccccccccCEEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeCCcHHHHHHHHHHHHHHHh
Q 003502 714 CKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVF 790 (815)
Q Consensus 714 ~~vlL~st~~g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~TiEe~i~~~~~~K~~~~ 790 (815)
++||+ +|.++++|+|++.|++||+|||+||+..++|++||++|.|+ +.||.|++.+|.||.+|.....|...+
T Consensus 424 ~~vLv-aT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~---~~v~~l~~~~t~ee~~y~~~~~ke~~~ 496 (773)
T PRK13766 424 FNVLV-STSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE---GRVVVLIAKGTRDEAYYWSSRRKEKKM 496 (773)
T ss_pred CCEEE-ECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC---CEEEEEEeCCChHHHHHHHhhHHHHHH
Confidence 77765 78999999999999999999999999999999999888775 678999999999999988776665554
No 24
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=6e-35 Score=300.22 Aligned_cols=468 Identities=18% Similarity=0.222 Sum_probs=297.6
Q ss_pred ccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcC-hH
Q 003502 120 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VA 198 (815)
Q Consensus 120 ~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P-~~ 198 (815)
...|.||..-+.-++. ++++++.++|||||++|+.+++..+...+ +.+|+++| +.
T Consensus 14 ie~R~YQ~~i~a~al~------~NtLvvlPTGLGKT~IA~~V~~~~l~~~~------------------~kvlfLAPTKP 69 (542)
T COG1111 14 IEPRLYQLNIAAKALF------KNTLVVLPTGLGKTFIAAMVIANRLRWFG------------------GKVLFLAPTKP 69 (542)
T ss_pred ccHHHHHHHHHHHHhh------cCeEEEecCCccHHHHHHHHHHHHHHhcC------------------CeEEEecCCch
Confidence 4579999998888777 48999999999999999888887765543 47999999 78
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEeCCCCcC-CcccccCCCEEEechhhhHHHhhhccCCCcccccccCcccchhhhhhhh
Q 003502 199 AVTQWVSEINRFTSVGSTKVLIYHGSNRER-SAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVVHL 277 (815)
Q Consensus 199 ll~qW~~Ei~~~~~~~~~~v~~~~g~~~~~-~~~~~~~~~vvi~ty~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (815)
|+.|...-+.+++.-+...+..+.|.-+.. ....+....|+++|.+++.+++..
T Consensus 70 LV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~------------------------- 124 (542)
T COG1111 70 LVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKA------------------------- 124 (542)
T ss_pred HHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhc-------------------------
Confidence 999999999999987778899999986644 455678899999999999998743
Q ss_pred hhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceeeEEEeecceeccCCCchHH--
Q 003502 278 KYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNTA-- 355 (815)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~~~-- 355 (815)
..+..-.+.++|+||||+.-+..+-..
T Consensus 125 ---------------------------------------------------Grid~~dv~~lifDEAHRAvGnyAYv~Va 153 (542)
T COG1111 125 ---------------------------------------------------GRIDLDDVSLLIFDEAHRAVGNYAYVFVA 153 (542)
T ss_pred ---------------------------------------------------CccChHHceEEEechhhhccCcchHHHHH
Confidence 225555789999999999977664433
Q ss_pred HHHHhhhcC-cEEEeeCCCCCCchhhHHHHHHHhccCCCCccccccccccccccCCCCCCCCCCCCcchhhhHhhhhccc
Q 003502 356 KAVLALESS-YKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATP 434 (815)
Q Consensus 356 ~~~~~l~~~-~r~~LTgTPi~n~~~el~~ll~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (815)
+....-..+ +.++|||||-. +.+.+-..+.-|++
T Consensus 154 ~~y~~~~k~~~ilgLTASPGs-~~ekI~eV~~nLgI-------------------------------------------- 188 (542)
T COG1111 154 KEYLRSAKNPLILGLTASPGS-DLEKIQEVVENLGI-------------------------------------------- 188 (542)
T ss_pred HHHHHhccCceEEEEecCCCC-CHHHHHHHHHhCCc--------------------------------------------
Confidence 322333333 56889999953 22333333333321
Q ss_pred ccccCCCcchhHHHHHHHHHHhhHhhhhhcc-CCcccccCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 003502 435 IQTHGNSYGGRRAMILLKHKVLRSVILRRTK-KGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGT 513 (815)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~ll~~~~lrr~k-~~v~~~~~lp~~~~~~~~~~l~~~~~~~y~~l~~~~~~~~~~~~~~~~ 513 (815)
+.+.+|.-. .||.++ +....+..+.+.++++-.+.-+.+.+-....+....+.+-
T Consensus 189 ----------------------e~vevrTE~d~DV~~Y--v~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~ 244 (542)
T COG1111 189 ----------------------EKVEVRTEEDPDVRPY--VKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGV 244 (542)
T ss_pred ----------------------ceEEEecCCCccHHHh--hccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 111222111 133333 4556677888888887666655555444444444444442
Q ss_pred cccch----HHHHHHHHHHHHHhcCcccccccccccccCCChhhhhhhhhhcCcccccCCCCccccCCchhhhhhHhhhc
Q 003502 514 VMNNY----AHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSS 589 (815)
Q Consensus 514 ~~~~~----~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~ 589 (815)
..... ..++.+. ..+.. ..+.. .......+. ..... ..|....++.+...+..-.+ +...|-....
T Consensus 245 ~~~~~~~~~kdl~~~~-~~~~~-~a~~~-~~~~~~~l~--~~a~~----~kl~~a~elletqGi~~~~~-Yl~~l~e~~~ 314 (542)
T COG1111 245 IESSSPVSKKDLLELR-QIRLI-MAKNE-DSDKFRLLS--VLAEA----IKLAHALELLETQGIRPFYQ-YLEKLEEEAT 314 (542)
T ss_pred eeccCcccHhHHHHHH-HHHHH-hccCc-cHHHHHHHH--HHHHH----HHHHHHHHHHHhhChHHHHH-HHHHHHHHhc
Confidence 22221 1222222 11111 00100 000000000 00000 00000000000000000000 0000000000
Q ss_pred cccCCCCCCCCCCCcccccccCCCCCCCCccccc--cCccccc-hhhhhhccccCcchHHHHHHHHHHHHHhcCCCceEE
Q 003502 590 ASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTI--KGFKSSS-ILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGI 666 (815)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~s~Kl~~l~~~l~~~~~~~~~~KvI 666 (815)
. + +....+.-. ..+.... ..... .......||+..+.++|.+.++..++.++|
T Consensus 315 ~--~---------------------~sk~a~~l~~d~~~~~al~~~~~~-~~~~v~HPKl~~l~eilke~~~k~~~~RvI 370 (542)
T COG1111 315 K--G---------------------GSKAAKSLLADPYFKRALRLLIRA-DESGVEHPKLEKLREILKEQLEKNGDSRVI 370 (542)
T ss_pred c--c---------------------chHHHHHHhcChhhHHHHHHHHHh-ccccCCCccHHHHHHHHHHHHhcCCCceEE
Confidence 0 0 000000000 0000000 00001 233345899999999999999888899999
Q ss_pred EEccChhHHHHHHHHHHhCCCcEE-EEec--------CCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEE
Q 003502 667 VFSQFTSFLDLINYSLHKSGVNCV-QLVG--------SMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVF 737 (815)
Q Consensus 667 IFs~~~~~~~~l~~~L~~~g~~~~-~i~G--------~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI 737 (815)
||++|+++++.|.++|...|+... ++-| +|++.++.++|++|++| .++||+ +|.+|.||||++.++.||
T Consensus 371 VFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~G-e~nVLV-aTSVgEEGLDIp~vDlVi 448 (542)
T COG1111 371 VFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKG-EYNVLV-ATSVGEEGLDIPEVDLVI 448 (542)
T ss_pred EEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcC-CceEEE-EcccccccCCCCcccEEE
Confidence 999999999999999999998875 5555 48999999999999998 899977 889999999999999999
Q ss_pred EeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeCCcHHHHHHHHHHHHHHHhhhhcC
Q 003502 738 LMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVG 795 (815)
Q Consensus 738 ~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~TiEe~i~~~~~~K~~~~~~~~~ 795 (815)
+|||.-+|...+||.||.+|. +.=.||-|+++||-||.-|....+|...+...+.
T Consensus 449 fYEpvpSeIR~IQR~GRTGR~---r~Grv~vLvt~gtrdeayy~~s~rke~~m~e~i~ 503 (542)
T COG1111 449 FYEPVPSEIRSIQRKGRTGRK---RKGRVVVLVTEGTRDEAYYYSSRRKEQKMIESIR 503 (542)
T ss_pred EecCCcHHHHHHHhhCccccC---CCCeEEEEEecCchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999884 6667888999999999999998888766655543
No 25
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=1.1e-30 Score=285.75 Aligned_cols=370 Identities=18% Similarity=0.241 Sum_probs=263.7
Q ss_pred cccccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcC
Q 003502 117 DLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP 196 (815)
Q Consensus 117 ~~~~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P 196 (815)
.....|||||.+++.-+.....+ .+.|++..++|.|||+.++.++.... .++|||||
T Consensus 32 ~~~~~lr~yQ~~al~a~~~~~~~-~~~gvivlpTGaGKT~va~~~~~~~~----------------------~~~Lvlv~ 88 (442)
T COG1061 32 AFEFELRPYQEEALDALVKNRRT-ERRGVIVLPTGAGKTVVAAEAIAELK----------------------RSTLVLVP 88 (442)
T ss_pred ccCCCCcHHHHHHHHHHHhhccc-CCceEEEeCCCCCHHHHHHHHHHHhc----------------------CCEEEEEC
Confidence 34566999999999877776666 57899999999999999998888775 36999999
Q ss_pred -hHHHHHHHHHHHHhcCCCCcEEEEEeCCCCcCCcccccCCCEEEechhhhHHHhhhccCCCcccccccCcccchhhhhh
Q 003502 197 -VAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVV 275 (815)
Q Consensus 197 -~~ll~qW~~Ei~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~vvi~ty~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (815)
..|+.||.+.+.+++... ..+-.+.|..+.... ..|+++||+++.....
T Consensus 89 ~~~L~~Qw~~~~~~~~~~~-~~~g~~~~~~~~~~~-----~~i~vat~qtl~~~~~------------------------ 138 (442)
T COG1061 89 TKELLDQWAEALKKFLLLN-DEIGIYGGGEKELEP-----AKVTVATVQTLARRQL------------------------ 138 (442)
T ss_pred cHHHHHHHHHHHHHhcCCc-cccceecCceeccCC-----CcEEEEEhHHHhhhhh------------------------
Confidence 566799998898887632 234555555443221 5799999999876410
Q ss_pred hhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceeeEEEeecceeccCCCchHH
Q 003502 276 HLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNTA 355 (815)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~~~ 355 (815)
...+...+|++||+||+|++..+...
T Consensus 139 ----------------------------------------------------l~~~~~~~~~liI~DE~Hh~~a~~~~-- 164 (442)
T COG1061 139 ----------------------------------------------------LDEFLGNEFGLIIFDEVHHLPAPSYR-- 164 (442)
T ss_pred ----------------------------------------------------hhhhcccccCEEEEEccccCCcHHHH--
Confidence 01133347999999999999765322
Q ss_pred HHHHhhhcCc-EEEeeCCCCCCchhhHHHHHHHhccCCCCccccccccccccccCCCCCCCCCCCCcchhhhHhhhhccc
Q 003502 356 KAVLALESSY-KWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATP 434 (815)
Q Consensus 356 ~~~~~l~~~~-r~~LTgTPi~n~~~el~~ll~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (815)
.....+.+.+ +++|||||.......+..+..++++..+... |
T Consensus 165 ~~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~------------------------------~------- 207 (442)
T COG1061 165 RILELLSAAYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVS------------------------------L------- 207 (442)
T ss_pred HHHHhhhcccceeeeccCceeecCCchhHHHHhcCCeEeecC------------------------------H-------
Confidence 2334445566 9999999986655556666665543222110 0
Q ss_pred ccccCCCcchhHHHHHHHHHHhhHhhhhhccCCcccccCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 003502 435 IQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGTV 514 (815)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~ll~~~~lrr~k~~v~~~~~lp~~~~~~~~~~l~~~~~~~y~~l~~~~~~~~~~~~~~~~~ 514 (815)
..++ .+..+.|..+..+.+.++..+...|................
T Consensus 208 ------------------~~li-------------~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~---- 252 (442)
T COG1061 208 ------------------KELI-------------DEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT---- 252 (442)
T ss_pred ------------------HHHH-------------hCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh----
Confidence 0111 12236777777888888888888777665443332211100
Q ss_pred ccchHHHHHHHHHHHHHhcCcccccccccccccCCChhhhhhhhhhcCcccccCCCCccccCCchhhhhhHhhhccccCC
Q 003502 515 MNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFV 594 (815)
Q Consensus 515 ~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~ 594 (815)
.......+..+
T Consensus 253 -------~~~~~~~~~~~-------------------------------------------------------------- 263 (442)
T COG1061 253 -------LRAENEARRIA-------------------------------------------------------------- 263 (442)
T ss_pred -------hhHHHHHHHHh--------------------------------------------------------------
Confidence 00000000000
Q ss_pred CCCCCCCCCcccccccCCCCCCCCccccccCccccchhhhhhccccCcchHHHHHHHHHHHHHhcCCCceEEEEccChhH
Q 003502 595 AKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSF 674 (815)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~ 674 (815)
.....|+..+..++.... .+.+++||+.+...
T Consensus 264 ---------------------------------------------~~~~~~~~~~~~~~~~~~---~~~~~lif~~~~~~ 295 (442)
T COG1061 264 ---------------------------------------------IASERKIAAVRGLLLKHA---RGDKTLIFASDVEH 295 (442)
T ss_pred ---------------------------------------------hccHHHHHHHHHHHHHhc---CCCcEEEEeccHHH
Confidence 012445666666665543 45799999999999
Q ss_pred HHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEeCCCCCcchHHHHhHh
Q 003502 675 LDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDR 754 (815)
Q Consensus 675 ~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR 754 (815)
+..+...|...|+ +..++|.++..+|.+++++|+.+ ++.+++ +++++.+|+|++.++.+|+..|.-++..+.|++||
T Consensus 296 a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g-~~~~lv-~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR 372 (442)
T COG1061 296 AYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTG-GIKVLV-TVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGR 372 (442)
T ss_pred HHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcC-CCCEEE-EeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhh
Confidence 9999999999988 88999999999999999999997 466655 77999999999999999999999999999999999
Q ss_pred hhcC-CCCCc--EEEEEEEeCCcHHHHHHHHHHH
Q 003502 755 IHRI-GQYKP--IRIVRFLIENTIEERILKLQEK 785 (815)
Q Consensus 755 ~~R~-GQ~~~--V~vy~l~~~~TiEe~i~~~~~~ 785 (815)
+.|. ..+.. +..|-++..++.+..+......
T Consensus 373 ~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (442)
T COG1061 373 GLRPAEGKEDTLALDYSLVPDDLGEEDIARRRRL 406 (442)
T ss_pred hccCCCCCCceEEEEEEeecCcccccchhhhhhh
Confidence 9994 44444 8888888899988888776554
No 26
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.98 E-value=1.5e-31 Score=271.62 Aligned_cols=393 Identities=20% Similarity=0.256 Sum_probs=279.2
Q ss_pred HHHHHHHHHhhhcccccCcccccccccccccCCCCCCcccccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHH
Q 003502 80 WEIWEEEHERWIDMHEKDDVDLDQQNAFMTETAEDPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAI 159 (815)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai 159 (815)
.+..+.-..+++........+.++.+...++.+..--...+.+||||..++..|...-.. |.||+..++|.|||+..+
T Consensus 261 ~e~vE~vkkRCieidyPlLeEYDFRND~~npdl~idLKPst~iRpYQEksL~KMFGNgRA--RSGiIVLPCGAGKtLVGv 338 (776)
T KOG1123|consen 261 QESVETVKKRCIEIDYPLLEEYDFRNDNVNPDLDIDLKPSTQIRPYQEKSLSKMFGNGRA--RSGIIVLPCGAGKTLVGV 338 (776)
T ss_pred HHHHHHHHHhhhccCchhhhhhccccCCCCCCCCcCcCcccccCchHHHHHHHHhCCCcc--cCceEEEecCCCCceeee
Confidence 344444556677776666777888777777776666666688999999999998765333 789999999999999998
Q ss_pred HHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCcCCcccccCCCE
Q 003502 160 ALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA-VTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDF 238 (815)
Q Consensus 160 ~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~l-l~qW~~Ei~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~v 238 (815)
..+...+ +.+||+|-.++ +.||...|..|..-..-.+..|+.+.+++.. ..+.|
T Consensus 339 TAa~tik----------------------K~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke~~~---~~~gv 393 (776)
T KOG1123|consen 339 TAACTIK----------------------KSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAKERFP---SGAGV 393 (776)
T ss_pred eeeeeec----------------------ccEEEEecCccCHHHHHHHHHhhcccCccceEEeeccccccCC---CCCcE
Confidence 8776654 68999999887 8999999999998777789999988876543 56789
Q ss_pred EEechhhhHHHhhhccCCCcccccccCcccchhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCC
Q 003502 239 VITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSV 318 (815)
Q Consensus 239 vi~ty~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (815)
+|+||+++...-++.. ...+.
T Consensus 394 vvsTYsMva~t~kRS~---------------------------------------eaek~-------------------- 414 (776)
T KOG1123|consen 394 VVTTYSMVAYTGKRSH---------------------------------------EAEKI-------------------- 414 (776)
T ss_pred EEEeeehhhhcccccH---------------------------------------HHHHH--------------------
Confidence 9999999865321110 00000
Q ss_pred CCCCCCCCCCCCCccceeeEEEeecceeccCCCchHHHHHHhhhcCcEEEeeCCCCCCchhhHHHHHHHh-ccCCCCccc
Q 003502 319 GGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFL-QITPYSYYF 397 (815)
Q Consensus 319 ~~~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~~~~~~~~l~~~~r~~LTgTPi~n~~~el~~ll~~L-~~~~~~~~~ 397 (815)
...+....|+++|+||+|.+ |.....+.+.-++++.+++||||-+.. .|-..-|+|| +|..|.-.
T Consensus 415 ---------m~~l~~~EWGllllDEVHvv--PA~MFRRVlsiv~aHcKLGLTATLvRE--DdKI~DLNFLIGPKlYEAn- 480 (776)
T KOG1123|consen 415 ---------MDFLRGREWGLLLLDEVHVV--PAKMFRRVLSIVQAHCKLGLTATLVRE--DDKITDLNFLIGPKLYEAN- 480 (776)
T ss_pred ---------HHHHhcCeeeeEEeehhccc--hHHHHHHHHHHHHHHhhccceeEEeec--cccccccceeecchhhhcc-
Confidence 12367789999999999998 433344444455899999999999853 3333334443 44443111
Q ss_pred cccccccccccCCCCCCCCCCCCcchhhhHhhhhcccccccCCCcchhHHHHHHHHHHhhHhhhhhccCCcccccCCCCe
Q 003502 398 CKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPR 477 (815)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~lrr~k~~v~~~~~lp~~ 477 (815)
|... - .-..+...
T Consensus 481 -----------------------------WmdL-------------------------~-------------~kGhIA~V 493 (776)
T KOG1123|consen 481 -----------------------------WMDL-------------------------Q-------------KKGHIAKV 493 (776)
T ss_pred -----------------------------HHHH-------------------------H-------------hCCceeEE
Confidence 1110 0 01114455
Q ss_pred EEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHhcCcccccccccccccCCChhhhhhh
Q 003502 478 IVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHV 557 (815)
Q Consensus 478 ~~~~~~~~l~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~ 557 (815)
....++|+|+++-...|-. ..... .++-.+
T Consensus 494 qCaEVWCpMt~eFy~eYL~---~~t~k---------------r~lLyv-------------------------------- 523 (776)
T KOG1123|consen 494 QCAEVWCPMTPEFYREYLR---ENTRK---------------RMLLYV-------------------------------- 523 (776)
T ss_pred eeeeeecCCCHHHHHHHHh---hhhhh---------------hheeee--------------------------------
Confidence 6778999999875443322 11110 000000
Q ss_pred hhhcCcccccCCCCccccCCchhhhhhHhhhccccCCCCCCCCCCCcccccccCCCCCCCCccccccCccccchhhhhhc
Q 003502 558 QQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQL 637 (815)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (815)
T Consensus 524 -------------------------------------------------------------------------------- 523 (776)
T KOG1123|consen 524 -------------------------------------------------------------------------------- 523 (776)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCcchHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEE
Q 003502 638 DEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIF 717 (815)
Q Consensus 638 ~~~~~s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vl 717 (815)
-...|..+..-+|+.+ +..|.|+|||+...-.+...+-.| |.+ .|.|.+++.+|.++++.|+.++.++.+
T Consensus 524 ---MNP~KFraCqfLI~~H--E~RgDKiIVFsDnvfALk~YAikl---~Kp--fIYG~Tsq~ERm~ILqnFq~n~~vNTI 593 (776)
T KOG1123|consen 524 ---MNPNKFRACQFLIKFH--ERRGDKIIVFSDNVFALKEYAIKL---GKP--FIYGPTSQNERMKILQNFQTNPKVNTI 593 (776)
T ss_pred ---cCcchhHHHHHHHHHH--HhcCCeEEEEeccHHHHHHHHHHc---CCc--eEECCCchhHHHHHHHhcccCCccceE
Confidence 1145666666666665 446799999998776655544443 444 578999999999999999999999998
Q ss_pred EEecCCCcccccccccCEEEEeCCCCCc-chHHHHhHhhhcCCC----CCcEEEEEEEeCCcHHHHHH
Q 003502 718 LMSLKAGGVALNLTVASHVFLMDPWWNP-AVEQQAQDRIHRIGQ----YKPIRIVRFLIENTIEERIL 780 (815)
Q Consensus 718 L~st~~g~~GlNL~~a~~vI~~d~~wnp-~~~~QaigR~~R~GQ----~~~V~vy~l~~~~TiEe~i~ 780 (815)
++| ++|...+||+.|+.+|-...+.-. .++.||.||+.|.-. .-++..|.||..||.|...-
T Consensus 594 FlS-KVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~YS 660 (776)
T KOG1123|consen 594 FLS-KVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYYS 660 (776)
T ss_pred EEe-eccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHhh
Confidence 888 999999999999999999887654 789999999999643 23499999999999886543
No 27
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.98 E-value=2.8e-30 Score=288.89 Aligned_cols=125 Identities=11% Similarity=0.075 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 003502 645 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 724 (815)
Q Consensus 645 Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g 724 (815)
+...+.+++..+.+ .+.++|||+..+..++.|.+.|...|+++..++|+++..+|..+++.|+++ ...|+|+|+++.
T Consensus 329 Rn~~I~~~~~~~~~--~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~-~~~vLvaT~~~l 405 (501)
T PHA02558 329 RNKWIANLALKLAK--KGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGG-KGIIIVASYGVF 405 (501)
T ss_pred HHHHHHHHHHHHHh--cCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCC-CCeEEEEEccee
Confidence 33445555555432 357889999999999999999999999999999999999999999999876 677888777999
Q ss_pred cccccccccCEEEEeCCCCCcchHHHHhHhhhcCCCCCc-EEEEEEEeC
Q 003502 725 GVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKP-IRIVRFLIE 772 (815)
Q Consensus 725 ~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~-V~vy~l~~~ 772 (815)
++|+|++.+++||+++|+.+...+.|++||++|.|..++ +.||.++-.
T Consensus 406 ~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~ 454 (501)
T PHA02558 406 STGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDD 454 (501)
T ss_pred ccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeecc
Confidence 999999999999999999999999999999999988665 999999854
No 28
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.96 E-value=5.4e-26 Score=248.77 Aligned_cols=147 Identities=16% Similarity=0.221 Sum_probs=119.1
Q ss_pred CcchHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHh---CCCcEEEEec--------CCCHHHHHHHHHhhc
Q 003502 641 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK---SGVNCVQLVG--------SMSIPARDAAINRFT 709 (815)
Q Consensus 641 ~~s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~---~g~~~~~i~G--------~~~~~~R~~~i~~F~ 709 (815)
...+|++.|.+.|....+..+..++|||+.++..+..|..+|.. .|++...+.| +|++.+..+++++|+
T Consensus 392 ~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr 471 (746)
T KOG0354|consen 392 KENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFR 471 (746)
T ss_pred ccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHh
Confidence 35899999999999999988899999999999999999999883 3556555555 478888999999999
Q ss_pred CCCCceEEEEecCCCcccccccccCEEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeCCcHHHHHHHH-HHHHHH
Q 003502 710 EDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKL-QEKKKL 788 (815)
Q Consensus 710 ~~~~~~vlL~st~~g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~TiEe~i~~~-~~~K~~ 788 (815)
+| .++||+ +|.+|.||||+..||.||.||..-||..++||+|| +| +++=.++.|.+ +.++.-+++ +..|..
T Consensus 472 ~G-~~NvLV-ATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gR---a~ns~~vll~t--~~~~~~~E~~~~~~e~ 543 (746)
T KOG0354|consen 472 DG-EINVLV-ATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GR---ARNSKCVLLTT--GSEVIEFERNNLAKEK 543 (746)
T ss_pred CC-CccEEE-EecchhccCCcccccEEEEecCCccHHHHHHHhcc-cc---ccCCeEEEEEc--chhHHHHHHHHHhHHH
Confidence 97 889877 88999999999999999999999999999999999 66 44445555555 444444444 446777
Q ss_pred HhhhhcC
Q 003502 789 VFEGTVG 795 (815)
Q Consensus 789 ~~~~~~~ 795 (815)
++..++.
T Consensus 544 lm~~~i~ 550 (746)
T KOG0354|consen 544 LMNQTIS 550 (746)
T ss_pred HHHHHHH
Confidence 7766654
No 29
>PTZ00110 helicase; Provisional
Probab=99.95 E-value=9.6e-26 Score=254.06 Aligned_cols=124 Identities=16% Similarity=0.164 Sum_probs=107.1
Q ss_pred hHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCC
Q 003502 644 TKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKA 723 (815)
Q Consensus 644 ~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~ 723 (815)
.|...|.++|..+.. .+.++||||+....++.|...|...|+++..+||+++..+|..+++.|+++ ...||+ +|++
T Consensus 361 ~k~~~L~~ll~~~~~--~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G-~~~ILV-aTdv 436 (545)
T PTZ00110 361 EKRGKLKMLLQRIMR--DGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTG-KSPIMI-ATDV 436 (545)
T ss_pred hHHHHHHHHHHHhcc--cCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcC-CCcEEE-Ecch
Confidence 355566666665533 457999999999999999999999999999999999999999999999987 677655 8899
Q ss_pred CcccccccccCEEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeCC
Q 003502 724 GGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIEN 773 (815)
Q Consensus 724 g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~ 773 (815)
+++|||++.+++||+||+|+++..|.||+||++|.|.+-. +|.|++.+
T Consensus 437 ~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~--ai~~~~~~ 484 (545)
T PTZ00110 437 ASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGA--SYTFLTPD 484 (545)
T ss_pred hhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCce--EEEEECcc
Confidence 9999999999999999999999999999999999997643 45566665
No 30
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.95 E-value=1.5e-25 Score=249.02 Aligned_cols=106 Identities=22% Similarity=0.305 Sum_probs=96.9
Q ss_pred cCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEE
Q 003502 659 RDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFL 738 (815)
Q Consensus 659 ~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~ 738 (815)
.....++|||+.....++.|...|...|+.+..++|+++..+|..+++.|+++ .++||+ +|+++++|||++.+++||+
T Consensus 242 ~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G-~~~vLV-aTd~~~~GiDip~v~~VI~ 319 (434)
T PRK11192 242 QPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDG-RVNVLV-ATDVAARGIDIDDVSHVIN 319 (434)
T ss_pred cCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCC-CCcEEE-EccccccCccCCCCCEEEE
Confidence 33457999999999999999999999999999999999999999999999987 788766 7799999999999999999
Q ss_pred eCCCCCcchHHHHhHhhhcCCCCCcEEE
Q 003502 739 MDPWWNPAVEQQAQDRIHRIGQYKPIRI 766 (815)
Q Consensus 739 ~d~~wnp~~~~QaigR~~R~GQ~~~V~v 766 (815)
||+|+++..|.|++||++|.|..-.+.+
T Consensus 320 ~d~p~s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 320 FDMPRSADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred ECCCCCHHHHhhcccccccCCCCceEEE
Confidence 9999999999999999999998655443
No 31
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.94 E-value=2.6e-25 Score=247.10 Aligned_cols=119 Identities=17% Similarity=0.225 Sum_probs=102.4
Q ss_pred cCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEE
Q 003502 659 RDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFL 738 (815)
Q Consensus 659 ~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~ 738 (815)
.....++|||+.....++.|...|...|+++..+||+++..+|.++++.|+++ .++||| +|+++++|||++++++||+
T Consensus 242 ~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g-~~~iLV-aTdv~~rGiDip~v~~VI~ 319 (456)
T PRK10590 242 KGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSG-DIRVLV-ATDIAARGLDIEELPHVVN 319 (456)
T ss_pred cCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcC-CCcEEE-EccHHhcCCCcccCCEEEE
Confidence 34457999999999999999999999999999999999999999999999987 778766 7899999999999999999
Q ss_pred eCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeCCcHHHHHHHHH
Q 003502 739 MDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQ 783 (815)
Q Consensus 739 ~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~TiEe~i~~~~ 783 (815)
||+|.++..|.|++||++|.|.+-. .+.|++.+ |..+++.+
T Consensus 320 ~~~P~~~~~yvqR~GRaGR~g~~G~--ai~l~~~~--d~~~~~~i 360 (456)
T PRK10590 320 YELPNVPEDYVHRIGRTGRAAATGE--ALSLVCVD--EHKLLRDI 360 (456)
T ss_pred eCCCCCHHHhhhhccccccCCCCee--EEEEecHH--HHHHHHHH
Confidence 9999999999999999999998654 33355443 44444433
No 32
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.94 E-value=5e-25 Score=246.16 Aligned_cols=121 Identities=17% Similarity=0.297 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 003502 645 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 724 (815)
Q Consensus 645 Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g 724 (815)
|+..|..++.. ....++||||.....++.+...|...|+.+..+||++++.+|+.+++.|+++ ..+||+ +|+++
T Consensus 229 k~~~l~~ll~~----~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g-~~~vLV-aTdv~ 302 (460)
T PRK11776 229 RLPALQRLLLH----HQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANR-SCSVLV-ATDVA 302 (460)
T ss_pred HHHHHHHHHHh----cCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCcEEE-Eeccc
Confidence 45555555542 2446899999999999999999999999999999999999999999999987 777766 78999
Q ss_pred cccccccccCEEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeCC
Q 003502 725 GVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIEN 773 (815)
Q Consensus 725 ~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~ 773 (815)
++|||++.+++||+||+|.++..|.||+||++|.|+.- ..|.|+..+
T Consensus 303 ~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G--~ai~l~~~~ 349 (460)
T PRK11776 303 ARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKG--LALSLVAPE 349 (460)
T ss_pred ccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcc--eEEEEEchh
Confidence 99999999999999999999999999999999999763 455566554
No 33
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=4.5e-25 Score=243.80 Aligned_cols=120 Identities=20% Similarity=0.205 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 003502 645 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 724 (815)
Q Consensus 645 Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g 724 (815)
|+..|..++.. ....++|||+.....++.|...|...|+++..++|+++..+|..+++.|+++ .++||+ +|+++
T Consensus 242 k~~~l~~ll~~----~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g-~~~vLV-aTdv~ 315 (423)
T PRK04837 242 KMRLLQTLIEE----EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRG-DLDILV-ATDVA 315 (423)
T ss_pred HHHHHHHHHHh----cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcC-CCcEEE-Eechh
Confidence 45555555432 3457999999999999999999999999999999999999999999999987 788766 77999
Q ss_pred cccccccccCEEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeC
Q 003502 725 GVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIE 772 (815)
Q Consensus 725 ~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~ 772 (815)
++|||++.+++||+||+|+++..|.|++||++|.|+.-. .+.|+.+
T Consensus 316 ~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~--ai~~~~~ 361 (423)
T PRK04837 316 ARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGH--SISLACE 361 (423)
T ss_pred hcCCCccccCEEEEeCCCCchhheEeccccccCCCCCee--EEEEeCH
Confidence 999999999999999999999999999999999997643 4456654
No 34
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=8.3e-25 Score=247.21 Aligned_cols=120 Identities=20% Similarity=0.317 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 003502 645 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 724 (815)
Q Consensus 645 Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g 724 (815)
|+..|..++. ...+.++|||+.....++.|.+.|...|+.+..+||+++..+|..+++.|+++ .++||+ +|+++
T Consensus 244 k~~~L~~ll~----~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G-~~~VLV-aTdv~ 317 (572)
T PRK04537 244 KQTLLLGLLS----RSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKG-QLEILV-ATDVA 317 (572)
T ss_pred HHHHHHHHHh----cccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcC-CCeEEE-Eehhh
Confidence 3444444443 33567999999999999999999999999999999999999999999999987 778766 77999
Q ss_pred cccccccccCEEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeC
Q 003502 725 GVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIE 772 (815)
Q Consensus 725 ~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~ 772 (815)
++|||++.+++||+||+|+++..|.|++||+.|.|..-.+ +.|++.
T Consensus 318 arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~a--i~~~~~ 363 (572)
T PRK04537 318 ARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDA--ISFACE 363 (572)
T ss_pred hcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceE--EEEecH
Confidence 9999999999999999999999999999999999986443 345544
No 35
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=4.9e-25 Score=245.61 Aligned_cols=105 Identities=18% Similarity=0.209 Sum_probs=96.9
Q ss_pred CCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEeC
Q 003502 661 GSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMD 740 (815)
Q Consensus 661 ~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~~d 740 (815)
++.++||||..+..++.+...|...|+.+..+||+++..+|..+++.|.++ .++||+ +|.+.+.|||++++++||+++
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g-~~~vLV-aT~~~~~GID~p~V~~VI~~~ 302 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRD-EIQVVV-ATVAFGMGINKPDVRFVIHYS 302 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcC-CCcEEE-EechhhccCCcccceEEEEeC
Confidence 456779999999999999999999999999999999999999999999987 788876 779999999999999999999
Q ss_pred CCCCcchHHHHhHhhhcCCCCCcEEEE
Q 003502 741 PWWNPAVEQQAQDRIHRIGQYKPIRIV 767 (815)
Q Consensus 741 ~~wnp~~~~QaigR~~R~GQ~~~V~vy 767 (815)
+|.++..|.|++||++|.|+.....++
T Consensus 303 ~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 303 LPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred CCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 999999999999999999987765443
No 36
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.94 E-value=1.7e-24 Score=243.41 Aligned_cols=107 Identities=17% Similarity=0.253 Sum_probs=95.9
Q ss_pred ceEEEEccChhHHHHHHHHHHh-CCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEeCC
Q 003502 663 AKGIVFSQFTSFLDLINYSLHK-SGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDP 741 (815)
Q Consensus 663 ~KvIIFs~~~~~~~~l~~~L~~-~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~~d~ 741 (815)
.++|||+..+..++.|...|.. .|+++..+||+++..+|..+++.|+++ .++||+ +|+++++|||++.+++||+||+
T Consensus 368 ~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G-~~~ILV-aTdvl~rGiDip~v~~VI~~d~ 445 (518)
T PLN00206 368 PPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVG-EVPVIV-ATGVLGRGVDLLRVRQVIIFDM 445 (518)
T ss_pred CCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCC-CCCEEE-EecHhhccCCcccCCEEEEeCC
Confidence 5899999999999999999975 699999999999999999999999987 778766 8899999999999999999999
Q ss_pred CCCcchHHHHhHhhhcCCCCCcEEEEEEEeCC
Q 003502 742 WWNPAVEQQAQDRIHRIGQYKPIRIVRFLIEN 773 (815)
Q Consensus 742 ~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~ 773 (815)
|.++..|.|++||++|.|..- .++.|+..+
T Consensus 446 P~s~~~yihRiGRaGR~g~~G--~ai~f~~~~ 475 (518)
T PLN00206 446 PNTIKEYIHQIGRASRMGEKG--TAIVFVNEE 475 (518)
T ss_pred CCCHHHHHHhccccccCCCCe--EEEEEEchh
Confidence 999999999999999999653 444566554
No 37
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=9.9e-25 Score=244.33 Aligned_cols=110 Identities=21% Similarity=0.264 Sum_probs=98.7
Q ss_pred CCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEe
Q 003502 660 DGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLM 739 (815)
Q Consensus 660 ~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~~ 739 (815)
....++|||++.+..++.|...|...|+.+..++|+++..+|.++++.|+++ .++||+ +|+++++|||++++++||+|
T Consensus 333 ~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G-~~~vLv-aT~~l~~GIDi~~v~~VI~~ 410 (475)
T PRK01297 333 NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREG-KIRVLV-ATDVAGRGIHIDGISHVINF 410 (475)
T ss_pred cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCC-CCcEEE-EccccccCCcccCCCEEEEe
Confidence 3457999999999999999999999999999999999999999999999987 788766 78999999999999999999
Q ss_pred CCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeCC
Q 003502 740 DPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIEN 773 (815)
Q Consensus 740 d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~ 773 (815)
++|+++..|.|++||++|.|+.-. ++.|+..+
T Consensus 411 ~~P~s~~~y~Qr~GRaGR~g~~g~--~i~~~~~~ 442 (475)
T PRK01297 411 TLPEDPDDYVHRIGRTGRAGASGV--SISFAGED 442 (475)
T ss_pred CCCCCHHHHHHhhCccCCCCCCce--EEEEecHH
Confidence 999999999999999999997643 44455443
No 38
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=9.7e-25 Score=232.03 Aligned_cols=119 Identities=19% Similarity=0.219 Sum_probs=107.9
Q ss_pred chHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 003502 643 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 722 (815)
Q Consensus 643 s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~ 722 (815)
..|...|.++|.... .+.+.|+||||+...+.+.|+..|...++++..|||..++.+|..+++.|++| ...||+ +|+
T Consensus 323 ~~K~~~l~~lL~~~~-~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG-~~~vLV-ATd 399 (519)
T KOG0331|consen 323 TAKLRKLGKLLEDIS-SDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREG-KSPVLV-ATD 399 (519)
T ss_pred HHHHHHHHHHHHHHh-ccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccC-CcceEE-Ecc
Confidence 567888888888776 44566999999999999999999999999999999999999999999999997 666655 889
Q ss_pred CCcccccccccCEEEEeCCCCCcchHHHHhHhhhcCCCCCcE
Q 003502 723 AGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPI 764 (815)
Q Consensus 723 ~g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V 764 (815)
+++.|||+++.++||+||+|-|...|.+|+||.+|.|++-..
T Consensus 400 VAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A 441 (519)
T KOG0331|consen 400 VAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTA 441 (519)
T ss_pred cccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceE
Confidence 999999999999999999999999999999999998887553
No 39
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.93 E-value=1.2e-23 Score=238.87 Aligned_cols=113 Identities=19% Similarity=0.224 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 003502 645 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 724 (815)
Q Consensus 645 Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g 724 (815)
|..+|..+|.. ....++||||.....++.|...|...|+.+..++|.+++.+|..++++|+++ .++||+ +|+++
T Consensus 232 k~~~L~~~L~~----~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G-~~~ILV-ATdv~ 305 (629)
T PRK11634 232 KNEALVRFLEA----EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDG-RLDILI-ATDVA 305 (629)
T ss_pred HHHHHHHHHHh----cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCC-CCCEEE-EcchH
Confidence 55556555542 2346899999999999999999999999999999999999999999999987 777765 88999
Q ss_pred cccccccccCEEEEeCCCCCcchHHHHhHhhhcCCCCCc
Q 003502 725 GVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKP 763 (815)
Q Consensus 725 ~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~ 763 (815)
+.|||++.+++||+||+|.++..|.|++||+.|.|..-.
T Consensus 306 arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ 344 (629)
T PRK11634 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGR 344 (629)
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcce
Confidence 999999999999999999999999999999999997654
No 40
>PTZ00424 helicase 45; Provisional
Probab=99.92 E-value=1.1e-23 Score=232.44 Aligned_cols=111 Identities=15% Similarity=0.237 Sum_probs=99.0
Q ss_pred CCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEeC
Q 003502 661 GSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMD 740 (815)
Q Consensus 661 ~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~~d 740 (815)
...++||||.....++.+...|...++.+..++|+++..+|..+++.|+++ .++|++ +|+++++|+|++.+++||++|
T Consensus 266 ~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g-~~~vLv-aT~~l~~GiDip~v~~VI~~~ 343 (401)
T PTZ00424 266 TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSG-STRVLI-TTDLLARGIDVQQVSLVINYD 343 (401)
T ss_pred CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCCEEE-EcccccCCcCcccCCEEEEEC
Confidence 346899999999999999999999999999999999999999999999987 777766 889999999999999999999
Q ss_pred CCCCcchHHHHhHhhhcCCCCCcEEEEEEEeCCcH
Q 003502 741 PWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTI 775 (815)
Q Consensus 741 ~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~Ti 775 (815)
+|.++..+.|++||++|.|.. -.++.|+..+..
T Consensus 344 ~p~s~~~y~qr~GRagR~g~~--G~~i~l~~~~~~ 376 (401)
T PTZ00424 344 LPASPENYIHRIGRSGRFGRK--GVAINFVTPDDI 376 (401)
T ss_pred CCCCHHHEeecccccccCCCC--ceEEEEEcHHHH
Confidence 999999999999999999864 445556665533
No 41
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.92 E-value=9.5e-24 Score=241.37 Aligned_cols=101 Identities=19% Similarity=0.196 Sum_probs=94.6
Q ss_pred CCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEeC
Q 003502 661 GSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMD 740 (815)
Q Consensus 661 ~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~~d 740 (815)
.+.++||||..+...+.+...|...|+++..+||+++..+|..+++.|.++ .++||+ +|.+.|.|||++++++||+||
T Consensus 235 ~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g-~~~VLV-aT~a~~~GIDip~V~~VI~~d 312 (607)
T PRK11057 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRD-DLQIVV-ATVAFGMGINKPNVRFVVHFD 312 (607)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCC-CCCEEE-EechhhccCCCCCcCEEEEeC
Confidence 457899999999999999999999999999999999999999999999987 777766 779999999999999999999
Q ss_pred CCCCcchHHHHhHhhhcCCCCCc
Q 003502 741 PWWNPAVEQQAQDRIHRIGQYKP 763 (815)
Q Consensus 741 ~~wnp~~~~QaigR~~R~GQ~~~ 763 (815)
+|.+...|.|++||++|.|....
T Consensus 313 ~P~s~~~y~Qr~GRaGR~G~~~~ 335 (607)
T PRK11057 313 IPRNIESYYQETGRAGRDGLPAE 335 (607)
T ss_pred CCCCHHHHHHHhhhccCCCCCce
Confidence 99999999999999999997655
No 42
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.92 E-value=1.3e-23 Score=249.63 Aligned_cols=113 Identities=15% Similarity=0.266 Sum_probs=89.0
Q ss_pred HHHhcCCCceEEEEccChhHHHHHHHHHHhC------CC---cEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCc
Q 003502 655 FMVERDGSAKGIVFSQFTSFLDLINYSLHKS------GV---NCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGG 725 (815)
Q Consensus 655 ~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~------g~---~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~ 725 (815)
..+....+.|+||||.....++.+.+.|... ++ .+..++|+++ ++.+++++|.++..+ .+++++++.+
T Consensus 691 ~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p-~IlVsvdmL~ 767 (1123)
T PRK11448 691 KYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLP-NIVVTVDLLT 767 (1123)
T ss_pred HHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCC-eEEEEecccc
Confidence 3333333579999999999998888777642 22 3456999985 577899999986434 4566889999
Q ss_pred ccccccccCEEEEeCCCCCcchHHHHhHhhhcCCC---CCcEEEEEEE
Q 003502 726 VALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQ---YKPIRIVRFL 770 (815)
Q Consensus 726 ~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ---~~~V~vy~l~ 770 (815)
+|+|.+.+++||++.|+-++..+.|++||+-|..- +....||.++
T Consensus 768 TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 768 TGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred cCCCcccccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEehH
Confidence 99999999999999999999999999999999754 4446676654
No 43
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.92 E-value=1.1e-23 Score=241.86 Aligned_cols=102 Identities=19% Similarity=0.201 Sum_probs=94.7
Q ss_pred CceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEeCC
Q 003502 662 SAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDP 741 (815)
Q Consensus 662 ~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~~d~ 741 (815)
+.++||||..+...+.+...|...|+++..+||+++..+|..+++.|.++ .+.|++ +|.+.|.|||++++++||+|++
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g-~~~vlV-aT~a~~~GID~p~v~~VI~~~~ 301 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYD-DVKVMV-ATNAFGMGIDKPNVRFVIHYDM 301 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcC-CCcEEE-EechhhccCcCCCCCEEEEcCC
Confidence 57899999999999999999999999999999999999999999999987 677766 7899999999999999999999
Q ss_pred CCCcchHHHHhHhhhcCCCCCcEE
Q 003502 742 WWNPAVEQQAQDRIHRIGQYKPIR 765 (815)
Q Consensus 742 ~wnp~~~~QaigR~~R~GQ~~~V~ 765 (815)
|.|+..|.|++||++|.|+...+.
T Consensus 302 p~s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 302 PGNLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred CCCHHHHhhhhccccCCCCCceEE
Confidence 999999999999999999765543
No 44
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.91 E-value=4e-22 Score=229.08 Aligned_cols=100 Identities=17% Similarity=0.187 Sum_probs=80.4
Q ss_pred ceEEEEccCh--------hHHHHHHHHHHh--CCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccc
Q 003502 663 AKGIVFSQFT--------SFLDLINYSLHK--SGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTV 732 (815)
Q Consensus 663 ~KvIIFs~~~--------~~~~~l~~~L~~--~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~ 732 (815)
++++|||... ..+..+.+.|.. .++++..+||+++..+|.+++++|+++ ..+|++ +|.+.++|+|+++
T Consensus 449 ~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g-~~~ILV-aT~vie~GvDiP~ 526 (630)
T TIGR00643 449 RQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREG-EVDILV-ATTVIEVGVDVPN 526 (630)
T ss_pred CcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCCEEE-ECceeecCcccCC
Confidence 5677776543 223344555543 478899999999999999999999987 777766 7899999999999
Q ss_pred cCEEEEeCCCC-CcchHHHHhHhhhcCCCCCcE
Q 003502 733 ASHVFLMDPWW-NPAVEQQAQDRIHRIGQYKPI 764 (815)
Q Consensus 733 a~~vI~~d~~w-np~~~~QaigR~~R~GQ~~~V 764 (815)
+++||+++++. +.+.+.|++||++|-|..-.+
T Consensus 527 v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ 559 (630)
T TIGR00643 527 ATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYC 559 (630)
T ss_pred CcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEE
Confidence 99999999874 678999999999999865433
No 45
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=3.1e-23 Score=205.88 Aligned_cols=124 Identities=19% Similarity=0.208 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 003502 645 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 724 (815)
Q Consensus 645 Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g 724 (815)
|-..|+.+|++. .+..+||||..-.+.+.+.-+|...|+....++|.|++..|..++++|+++ ...|++ +|+++
T Consensus 287 K~~yLV~ll~e~----~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~-~r~iLv-~TDVa 360 (476)
T KOG0330|consen 287 KDTYLVYLLNEL----AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAG-ARSILV-CTDVA 360 (476)
T ss_pred cchhHHHHHHhh----cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhcc-CCcEEE-ecchh
Confidence 445677777644 457899999999999999999999999999999999999999999999997 666665 78999
Q ss_pred cccccccccCEEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeCCcHH
Q 003502 725 GVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIE 776 (815)
Q Consensus 725 ~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~TiE 776 (815)
+.|||.+.+++||+||.|-+...|++|.||+.|.| +.-.++.||+.-.+|
T Consensus 361 SRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG--rsG~~ItlVtqyDve 410 (476)
T KOG0330|consen 361 SRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG--RSGKAITLVTQYDVE 410 (476)
T ss_pred cccCCCCCceEEEecCCCCcHHHHHHHcccccccC--CCcceEEEEehhhhH
Confidence 99999999999999999999999999999999999 566778889884443
No 46
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.90 E-value=1.5e-22 Score=232.22 Aligned_cols=104 Identities=18% Similarity=0.134 Sum_probs=96.2
Q ss_pred CceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEeCC
Q 003502 662 SAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDP 741 (815)
Q Consensus 662 ~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~~d~ 741 (815)
+...||||..+...+.|...|...|+++..+||+++..+|..++++|.++ .++||+ +|.+.|.|||+++.++||+|++
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~G-ei~VLV-ATdAFGMGIDkPDVR~VIHydl 757 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKD-EINIIC-ATVAFGMGINKPDVRFVIHHSL 757 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcC-CCcEEE-EechhhcCCCccCCcEEEEcCC
Confidence 45789999999999999999999999999999999999999999999987 788766 7799999999999999999999
Q ss_pred CCCcchHHHHhHhhhcCCCCCcEEEE
Q 003502 742 WWNPAVEQQAQDRIHRIGQYKPIRIV 767 (815)
Q Consensus 742 ~wnp~~~~QaigR~~R~GQ~~~V~vy 767 (815)
|.++..|.|++||++|.|+.-.+..|
T Consensus 758 PkSiEsYyQriGRAGRDG~~g~cILl 783 (1195)
T PLN03137 758 PKSIEGYHQECGRAGRDGQRSSCVLY 783 (1195)
T ss_pred CCCHHHHHhhhcccCCCCCCceEEEE
Confidence 99999999999999999987665443
No 47
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.90 E-value=6.5e-22 Score=228.71 Aligned_cols=105 Identities=15% Similarity=0.154 Sum_probs=84.1
Q ss_pred CceEEEEccChh--------HHHHHHHHHHhC--CCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCccccccc
Q 003502 662 SAKGIVFSQFTS--------FLDLINYSLHKS--GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLT 731 (815)
Q Consensus 662 ~~KvIIFs~~~~--------~~~~l~~~L~~~--g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~ 731 (815)
+++++|||...+ .+..+.+.|... ++++..+||+++..+|.+++++|.++ ..+||+ +|.+.++|+|++
T Consensus 471 g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g-~~~ILV-aT~vie~GiDip 548 (681)
T PRK10917 471 GRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAG-EIDILV-ATTVIEVGVDVP 548 (681)
T ss_pred CCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCCEEE-ECcceeeCcccC
Confidence 478888886432 234455566544 57899999999999999999999987 777765 889999999999
Q ss_pred ccCEEEEeCCCC-CcchHHHHhHhhhcCCCCCcEEEEEEE
Q 003502 732 VASHVFLMDPWW-NPAVEQQAQDRIHRIGQYKPIRIVRFL 770 (815)
Q Consensus 732 ~a~~vI~~d~~w-np~~~~QaigR~~R~GQ~~~V~vy~l~ 770 (815)
+++.||+++++. ..+.+.|++||++|.|.. -++|.++
T Consensus 549 ~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~--g~~ill~ 586 (681)
T PRK10917 549 NATVMVIENAERFGLAQLHQLRGRVGRGAAQ--SYCVLLY 586 (681)
T ss_pred CCcEEEEeCCCCCCHHHHHHHhhcccCCCCc--eEEEEEE
Confidence 999999999874 578999999999999865 3444444
No 48
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.90 E-value=1.1e-21 Score=229.20 Aligned_cols=107 Identities=8% Similarity=0.078 Sum_probs=93.2
Q ss_pred CceEEEEccChhHHHHHHHHHHhC--CCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEe
Q 003502 662 SAKGIVFSQFTSFLDLINYSLHKS--GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLM 739 (815)
Q Consensus 662 ~~KvIIFs~~~~~~~~l~~~L~~~--g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~~ 739 (815)
+.+++||++....++.+...|... ++++..+||.|+..+|.+++.+|.++ .++||+ +|.+.+.|+|++++++||++
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~G-k~~ILV-aT~iie~GIDIp~v~~VIi~ 737 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKG-EFQVLV-CTTIIETGIDIPNANTIIIE 737 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcC-CCCEEE-ECChhhcccccccCCEEEEe
Confidence 368999999999999999999874 78999999999999999999999987 777766 88999999999999999999
Q ss_pred CCC-CCcchHHHHhHhhhcCCCCCcEEEEEEEeC
Q 003502 740 DPW-WNPAVEQQAQDRIHRIGQYKPIRIVRFLIE 772 (815)
Q Consensus 740 d~~-wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~ 772 (815)
+++ +..+.+.|++||++|.|+. -++|.|+..
T Consensus 738 ~a~~~gls~l~Qr~GRvGR~g~~--g~aill~~~ 769 (926)
T TIGR00580 738 RADKFGLAQLYQLRGRVGRSKKK--AYAYLLYPH 769 (926)
T ss_pred cCCCCCHHHHHHHhcCCCCCCCC--eEEEEEECC
Confidence 985 4667899999999998864 455656644
No 49
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.89 E-value=2.5e-21 Score=224.55 Aligned_cols=116 Identities=11% Similarity=0.053 Sum_probs=98.7
Q ss_pred CceEEEEccChhHHHHHHHHHHhC--------CCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCccccccccc
Q 003502 662 SAKGIVFSQFTSFLDLINYSLHKS--------GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVA 733 (815)
Q Consensus 662 ~~KvIIFs~~~~~~~~l~~~L~~~--------g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a 733 (815)
+.++|||++.+..++.|...|... +.++..++|++++++|.++.++|.++ .+++++ +|++++.|||+...
T Consensus 271 ~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G-~i~vLV-aTd~lerGIDI~~v 348 (742)
T TIGR03817 271 GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDG-ELLGVA-TTNALELGVDISGL 348 (742)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcC-CceEEE-ECchHhccCCcccc
Confidence 479999999999999999887653 56777899999999999999999987 777765 88999999999999
Q ss_pred CEEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeCCcHHHHHHH
Q 003502 734 SHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILK 781 (815)
Q Consensus 734 ~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~TiEe~i~~ 781 (815)
++||+|+.|-+...+.||+||++|.|+.-- ++.++..+..|..++.
T Consensus 349 d~VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v~~~~~~d~~~~~ 394 (742)
T TIGR03817 349 DAVVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLVARDDPLDTYLVH 394 (742)
T ss_pred cEEEEeCCCCCHHHHHHhccccCCCCCCcE--EEEEeCCChHHHHHHh
Confidence 999999999999999999999999997533 3445555666665544
No 50
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.88 E-value=4.1e-21 Score=229.47 Aligned_cols=106 Identities=9% Similarity=0.048 Sum_probs=92.0
Q ss_pred CceEEEEccChhHHHHHHHHHHhC--CCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEe
Q 003502 662 SAKGIVFSQFTSFLDLINYSLHKS--GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLM 739 (815)
Q Consensus 662 ~~KvIIFs~~~~~~~~l~~~L~~~--g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~~ 739 (815)
+.+++||++....++.+.+.|... ++++..+||.|+..+|.+++.+|.++ .++||+ +|.+.+.|||++.+++||+.
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~G-k~~VLV-aTdIierGIDIP~v~~VIi~ 886 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ-RFNVLV-CTTIIETGIDIPTANTIIIE 886 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhc-CCCEEE-ECchhhcccccccCCEEEEe
Confidence 358999999999999999999876 78899999999999999999999987 788866 77999999999999999988
Q ss_pred CCC-CCcchHHHHhHhhhcCCCCCcEEEEEEEe
Q 003502 740 DPW-WNPAVEQQAQDRIHRIGQYKPIRIVRFLI 771 (815)
Q Consensus 740 d~~-wnp~~~~QaigR~~R~GQ~~~V~vy~l~~ 771 (815)
+++ +....+.|++||++|.|++- ++|.++.
T Consensus 887 ~ad~fglaq~~Qr~GRvGR~g~~g--~a~ll~~ 917 (1147)
T PRK10689 887 RADHFGLAQLHQLRGRVGRSHHQA--YAWLLTP 917 (1147)
T ss_pred cCCCCCHHHHHHHhhccCCCCCce--EEEEEeC
Confidence 764 67788999999999998763 4554443
No 51
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1.7e-20 Score=209.48 Aligned_cols=133 Identities=24% Similarity=0.349 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 003502 645 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 724 (815)
Q Consensus 645 Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g 724 (815)
|+..|..++... ...++|||+.....++.|...|...|+++..|||++++.+|.+.+..|+++ ..+||| +|+++
T Consensus 260 k~~~L~~ll~~~----~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g-~~~vLV-aTDva 333 (513)
T COG0513 260 KLELLLKLLKDE----DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDG-ELRVLV-ATDVA 333 (513)
T ss_pred HHHHHHHHHhcC----CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcC-CCCEEE-Eechh
Confidence 666666666533 334799999999999999999999999999999999999999999999976 888877 77999
Q ss_pred cccccccccCEEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeCCcHHHHHHHHHHHH
Q 003502 725 GVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKK 786 (815)
Q Consensus 725 ~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~TiEe~i~~~~~~K 786 (815)
++|||++..++||+||+|.++..|.+|+||.+|.|.+- ..+.|++. .-|...+..++..
T Consensus 334 aRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G--~ai~fv~~-~~e~~~l~~ie~~ 392 (513)
T COG0513 334 ARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKG--VAISFVTE-EEEVKKLKRIEKR 392 (513)
T ss_pred hccCCccccceeEEccCCCCHHHheeccCccccCCCCC--eEEEEeCc-HHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999443 45556666 2355555555444
No 52
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.87 E-value=2.5e-20 Score=220.80 Aligned_cols=105 Identities=17% Similarity=0.144 Sum_probs=91.5
Q ss_pred CceEEEEccChhHHHHHHHHHHhC------CCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCE
Q 003502 662 SAKGIVFSQFTSFLDLINYSLHKS------GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASH 735 (815)
Q Consensus 662 ~~KvIIFs~~~~~~~~l~~~L~~~------g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~ 735 (815)
+.++||||+.+..++.+...|... +..+..+||+++.++|..+.++|+++ .++|++ +|.+++.|||++..++
T Consensus 284 ~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G-~i~vLV-aTs~Le~GIDip~Vd~ 361 (876)
T PRK13767 284 HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRG-ELKVVV-SSTSLELGIDIGYIDL 361 (876)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcC-CCeEEE-ECChHHhcCCCCCCcE
Confidence 368999999999999999888762 46788899999999999999999987 777766 7899999999999999
Q ss_pred EEEeCCCCCcchHHHHhHhhhcC-CCCCcEEEEE
Q 003502 736 VFLMDPWWNPAVEQQAQDRIHRI-GQYKPIRIVR 768 (815)
Q Consensus 736 vI~~d~~wnp~~~~QaigR~~R~-GQ~~~V~vy~ 768 (815)
||++++|.+...+.||+||++|. |+...-.++-
T Consensus 362 VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 362 VVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred EEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 99999999999999999999986 4444455543
No 53
>PRK02362 ski2-like helicase; Provisional
Probab=99.86 E-value=7.2e-20 Score=215.16 Aligned_cols=108 Identities=15% Similarity=0.034 Sum_probs=86.0
Q ss_pred CceEEEEccChhHHHHHHHHHHhC------------------------------------CCcEEEEecCCCHHHHHHHH
Q 003502 662 SAKGIVFSQFTSFLDLINYSLHKS------------------------------------GVNCVQLVGSMSIPARDAAI 705 (815)
Q Consensus 662 ~~KvIIFs~~~~~~~~l~~~L~~~------------------------------------g~~~~~i~G~~~~~~R~~~i 705 (815)
+.++|||+..+.....++..|... ...+...||+++..+|..+.
T Consensus 243 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve 322 (737)
T PRK02362 243 GGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVE 322 (737)
T ss_pred CCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHH
Confidence 468999999888766665555432 13467789999999999999
Q ss_pred HhhcCCCCceEEEEecCCCcccccccccCEEEE----eC-----CCCCcchHHHHhHhhhcCCCCCcEEEEEEEe
Q 003502 706 NRFTEDPDCKIFLMSLKAGGVALNLTVASHVFL----MD-----PWWNPAVEQQAQDRIHRIGQYKPIRIVRFLI 771 (815)
Q Consensus 706 ~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~----~d-----~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~ 771 (815)
+.|+++ .++|++ +|.+.+.|+|++..++||. || .+.++..+.|++||++|.|....-.++-++.
T Consensus 323 ~~Fr~G-~i~VLv-aT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~ 395 (737)
T PRK02362 323 DAFRDR-LIKVIS-STPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAK 395 (737)
T ss_pred HHHHcC-CCeEEE-echhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEec
Confidence 999997 888866 7899999999999888876 77 4678899999999999999876544544443
No 54
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.85 E-value=2.1e-20 Score=192.51 Aligned_cols=126 Identities=21% Similarity=0.201 Sum_probs=110.4
Q ss_pred CcchHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEe
Q 003502 641 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMS 720 (815)
Q Consensus 641 ~~s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~s 720 (815)
..+.|..+|+++|... ....+|||.++...++.|++.|++.|++++.+||+-+++||+.++..|+++ ...||+ +
T Consensus 500 ~ed~k~kkL~eil~~~----~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~-t~dIlV-a 573 (673)
T KOG0333|consen 500 SEDEKRKKLIEILESN----FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREG-TGDILV-A 573 (673)
T ss_pred cchHHHHHHHHHHHhC----CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhc-CCCEEE-E
Confidence 3477888888888754 347899999999999999999999999999999999999999999999986 556655 7
Q ss_pred cCCCcccccccccCEEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeCCc
Q 003502 721 LKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENT 774 (815)
Q Consensus 721 t~~g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~T 774 (815)
|+++|.|||+++.++||+||..-+...|.+||||.+|.|+.-.+ ..|+++..
T Consensus 574 TDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~Gta--iSflt~~d 625 (673)
T KOG0333|consen 574 TDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTA--ISFLTPAD 625 (673)
T ss_pred ecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCcee--EEEeccch
Confidence 79999999999999999999999999999999999999987543 34555544
No 55
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=6.6e-20 Score=174.36 Aligned_cols=110 Identities=15% Similarity=0.253 Sum_probs=100.6
Q ss_pred ceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEeCCC
Q 003502 663 AKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPW 742 (815)
Q Consensus 663 ~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~~d~~ 742 (815)
.+.+|||+.+...++|.+.++..++.+..+||.+++++|.+++..|+.+ ..+|+| +|++-+.|+|.|..+.||+||+|
T Consensus 267 tQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg-~SrvLi-tTDVwaRGiDv~qVslviNYDLP 344 (400)
T KOG0328|consen 267 TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSG-KSRVLI-TTDVWARGIDVQQVSLVINYDLP 344 (400)
T ss_pred heEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcC-CceEEE-EechhhccCCcceeEEEEecCCC
Confidence 4789999999999999999999999999999999999999999999997 777766 88999999999999999999999
Q ss_pred CCcchHHHHhHhhhcCCCCCcEEEEEEEeCCcHH
Q 003502 743 WNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIE 776 (815)
Q Consensus 743 wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~TiE 776 (815)
-|+..|++||||.+|+|.+ -.+.+|+..+.++
T Consensus 345 ~nre~YIHRIGRSGRFGRk--GvainFVk~~d~~ 376 (400)
T KOG0328|consen 345 NNRELYIHRIGRSGRFGRK--GVAINFVKSDDLR 376 (400)
T ss_pred ccHHHHhhhhccccccCCc--ceEEEEecHHHHH
Confidence 9999999999999999975 3556788766554
No 56
>PRK01172 ski2-like helicase; Provisional
Probab=99.84 E-value=4.7e-19 Score=206.97 Aligned_cols=99 Identities=15% Similarity=0.069 Sum_probs=77.5
Q ss_pred CceEEEEccChhHHHHHHHHHHhC-------------------------CCcEEEEecCCCHHHHHHHHHhhcCCCCceE
Q 003502 662 SAKGIVFSQFTSFLDLINYSLHKS-------------------------GVNCVQLVGSMSIPARDAAINRFTEDPDCKI 716 (815)
Q Consensus 662 ~~KvIIFs~~~~~~~~l~~~L~~~-------------------------g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v 716 (815)
+.++|||+..+.....++..|... ...+..+||+++..+|..+.+.|+++ .++|
T Consensus 236 ~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g-~i~V 314 (674)
T PRK01172 236 GGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNR-YIKV 314 (674)
T ss_pred CCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcC-CCeE
Confidence 357788888777666666555432 12356789999999999999999987 7887
Q ss_pred EEEecCCCcccccccccCEEEEeCC---------CCCcchHHHHhHhhhcCCCCCc
Q 003502 717 FLMSLKAGGVALNLTVASHVFLMDP---------WWNPAVEQQAQDRIHRIGQYKP 763 (815)
Q Consensus 717 lL~st~~g~~GlNL~~a~~vI~~d~---------~wnp~~~~QaigR~~R~GQ~~~ 763 (815)
++ +|.+++.|+|++. .+||+++. ++++..+.|++||++|.|....
T Consensus 315 Lv-aT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~ 368 (674)
T PRK01172 315 IV-ATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQY 368 (674)
T ss_pred EE-ecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCc
Confidence 66 7899999999996 57777664 3567889999999999997655
No 57
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.83 E-value=7e-19 Score=202.46 Aligned_cols=107 Identities=18% Similarity=0.171 Sum_probs=80.9
Q ss_pred CceEEEEccChhHHHHHHHHHHhC-----CCcEEEEecCCCHH---------------------HHHHHHHhhcCCCCce
Q 003502 662 SAKGIVFSQFTSFLDLINYSLHKS-----GVNCVQLVGSMSIP---------------------ARDAAINRFTEDPDCK 715 (815)
Q Consensus 662 ~~KvIIFs~~~~~~~~l~~~L~~~-----g~~~~~i~G~~~~~---------------------~R~~~i~~F~~~~~~~ 715 (815)
+.|.+|||.++..+..+...|... +...+.++|+.+.. ....++++|.+++.++
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 479999999999988888887654 34456677765432 2247899998765777
Q ss_pred EEEEecCCCcccccccccCEEEEeCCCCCcchHHHHhHhhhcC-CCCCc-EEEEEEE
Q 003502 716 IFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRI-GQYKP-IRIVRFL 770 (815)
Q Consensus 716 vlL~st~~g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~-GQ~~~-V~vy~l~ 770 (815)
+++ ..+...+|.|.+.++++++.-|.-.. .+.|++||+.|+ +..|+ ..|+.++
T Consensus 594 ilI-VvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR~~~~~K~~g~IvDy~ 648 (667)
T TIGR00348 594 LLI-VVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNRIDGKDKTFGLIVDYR 648 (667)
T ss_pred EEE-EEcccccccCCCccceEEEecccccc-HHHHHHHHhccccCCCCCCEEEEECc
Confidence 766 55999999999999999999987765 478999999995 54343 6666665
No 58
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.83 E-value=2.5e-18 Score=186.13 Aligned_cols=73 Identities=18% Similarity=0.242 Sum_probs=65.7
Q ss_pred CCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEeCCC-CCcchHHHHhHhhhcCCC
Q 003502 686 GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPW-WNPAVEQQAQDRIHRIGQ 760 (815)
Q Consensus 686 g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~~d~~-wnp~~~~QaigR~~R~GQ 760 (815)
++++..+||.|+.+++++++.+|+++ +++||+ ||.+...|+|+++|+.+|++++. +--++..|-.||++|=+.
T Consensus 507 ~~~vgL~HGrm~~~eKd~vM~~Fk~~-e~~ILV-aTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~ 580 (677)
T COG1200 507 ELKVGLVHGRMKPAEKDAVMEAFKEG-EIDILV-ATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDL 580 (677)
T ss_pred cceeEEEecCCChHHHHHHHHHHHcC-CCcEEE-EeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCc
Confidence 56788999999999999999999997 777766 88999999999999999999985 777999999999999543
No 59
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.83 E-value=2.6e-18 Score=193.04 Aligned_cols=115 Identities=10% Similarity=0.022 Sum_probs=97.7
Q ss_pred cchHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEec
Q 003502 642 SSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSL 721 (815)
Q Consensus 642 ~s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st 721 (815)
...|..++++.+..... .+.++||||......+.|...|...|+++..++|.+...++..+..+|+.+ . ++++|
T Consensus 406 ~~~K~~ai~~~i~~~~~--~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g---~-VlIAT 479 (762)
T TIGR03714 406 LPEKLMATLEDVKEYHE--TGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG---A-VTVAT 479 (762)
T ss_pred HHHHHHHHHHHHHHHhh--CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC---e-EEEEc
Confidence 36789999999987633 458999999999999999999999999999999999877776666666554 3 45699
Q ss_pred CCCccccccc---------ccCEEEEeCCCCCcchHHHHhHhhhcCCCCCc
Q 003502 722 KAGGVALNLT---------VASHVFLMDPWWNPAVEQQAQDRIHRIGQYKP 763 (815)
Q Consensus 722 ~~g~~GlNL~---------~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~ 763 (815)
+.+|.|+|++ +.++|+.++++-+... .|++||++|.|..-.
T Consensus 480 dmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~ 529 (762)
T TIGR03714 480 SMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGS 529 (762)
T ss_pred cccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCcee
Confidence 9999999999 8899999999977655 999999999997654
No 60
>PRK00254 ski2-like helicase; Provisional
Probab=99.83 E-value=2e-18 Score=202.50 Aligned_cols=85 Identities=12% Similarity=-0.051 Sum_probs=67.0
Q ss_pred cEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEE-------eCCCC-CcchHHHHhHhhhcCC
Q 003502 688 NCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFL-------MDPWW-NPAVEQQAQDRIHRIG 759 (815)
Q Consensus 688 ~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~-------~d~~w-np~~~~QaigR~~R~G 759 (815)
.+..+||+++..+|..+.+.|+++ .++|++ +|.+.+.|+|++..+.||. +..+. ....+.|++||++|.|
T Consensus 297 gv~~hHagl~~~eR~~ve~~F~~G-~i~VLv-aT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~ 374 (720)
T PRK00254 297 GVAFHHAGLGRTERVLIEDAFREG-LIKVIT-ATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPK 374 (720)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHCC-CCeEEE-eCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCC
Confidence 477899999999999999999987 788766 8899999999998887773 22222 3357899999999998
Q ss_pred CCCcEEEEEEEeCCc
Q 003502 760 QYKPIRIVRFLIENT 774 (815)
Q Consensus 760 Q~~~V~vy~l~~~~T 774 (815)
....-.++-++..+.
T Consensus 375 ~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 375 YDEVGEAIIVATTEE 389 (720)
T ss_pred cCCCceEEEEecCcc
Confidence 766655655555443
No 61
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.82 E-value=1.6e-18 Score=188.07 Aligned_cols=107 Identities=12% Similarity=0.122 Sum_probs=87.8
Q ss_pred CceEEEEccChhHHHHHHHHHHhCCC--cEEEEecCCCHHHHHH----HHHhhcCCCCceEEEEecCCCcccccccccCE
Q 003502 662 SAKGIVFSQFTSFLDLINYSLHKSGV--NCVQLVGSMSIPARDA----AINRFTEDPDCKIFLMSLKAGGVALNLTVASH 735 (815)
Q Consensus 662 ~~KvIIFs~~~~~~~~l~~~L~~~g~--~~~~i~G~~~~~~R~~----~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~ 735 (815)
+.++|||+.....++.+...|...+. .+..+||.++..+|.+ +++.|.++ ...+++ +|++++.|+|+. ++.
T Consensus 222 ~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~-~~~ilv-aT~~~~~GiDi~-~~~ 298 (358)
T TIGR01587 222 GGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKN-EKFVIV-ATQVIEASLDIS-ADV 298 (358)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCC-CCeEEE-ECcchhceeccC-CCE
Confidence 47999999999999999999988776 4889999999999976 48899885 666655 889999999994 888
Q ss_pred EEEeCCCCCcchHHHHhHhhhcCCCCC----cEEEEEEEeCC
Q 003502 736 VFLMDPWWNPAVEQQAQDRIHRIGQYK----PIRIVRFLIEN 773 (815)
Q Consensus 736 vI~~d~~wnp~~~~QaigR~~R~GQ~~----~V~vy~l~~~~ 773 (815)
||+++.+ +..+.|++||++|.|... .|.|+.....+
T Consensus 299 vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 299 MITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEG 338 (358)
T ss_pred EEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCC
Confidence 8888765 789999999999999754 35555444433
No 62
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.82 E-value=5.7e-19 Score=184.80 Aligned_cols=123 Identities=16% Similarity=0.125 Sum_probs=105.4
Q ss_pred chHHHHHHHHHHHHHhc-----CCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEE
Q 003502 643 STKIEALREEIRFMVER-----DGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIF 717 (815)
Q Consensus 643 s~Kl~~l~~~l~~~~~~-----~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vl 717 (815)
+.|...|+++|...... ...++++||++....++.|+.+|...|+++..|+|..++.+|.+.++.|.++ .+.|+
T Consensus 313 ~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g-~~pvl 391 (482)
T KOG0335|consen 313 MEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNG-KAPVL 391 (482)
T ss_pred hhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcC-CcceE
Confidence 44555666665544311 1235999999999999999999999999999999999999999999999998 67776
Q ss_pred EEecCCCcccccccccCEEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEE
Q 003502 718 LMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIV 767 (815)
Q Consensus 718 L~st~~g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy 767 (815)
+ +|.+++.|||++...|||+||.|-+-..|.+||||.+|.|+.-..+.+
T Consensus 392 V-aT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf 440 (482)
T KOG0335|consen 392 V-ATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSF 440 (482)
T ss_pred E-EehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEE
Confidence 6 779999999999999999999999999999999999999998775554
No 63
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.82 E-value=1.6e-19 Score=185.03 Aligned_cols=108 Identities=16% Similarity=0.209 Sum_probs=94.5
Q ss_pred CCceEEEEccChhHHHHHHHHHH----hCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEE
Q 003502 661 GSAKGIVFSQFTSFLDLINYSLH----KSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHV 736 (815)
Q Consensus 661 ~~~KvIIFs~~~~~~~~l~~~L~----~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~v 736 (815)
...++|+|+.....+..|...|. ...+++..++|+.+.+.|.+.+.+|+.+ +++||++| +++++|+|+.+.+.|
T Consensus 428 k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g-~i~vLIcS-D~laRGiDv~~v~~V 505 (620)
T KOG0350|consen 428 KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKG-DINVLICS-DALARGIDVNDVDNV 505 (620)
T ss_pred hcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcC-CceEEEeh-hhhhcCCcccccceE
Confidence 45799999999999888888877 3456777799999999999999999998 99998855 999999999999999
Q ss_pred EEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeC
Q 003502 737 FLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIE 772 (815)
Q Consensus 737 I~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~ 772 (815)
|+||||-.-.+|.+|+||..|.||.- +.|.|+..
T Consensus 506 INYd~P~~~ktyVHR~GRTARAgq~G--~a~tll~~ 539 (620)
T KOG0350|consen 506 INYDPPASDKTYVHRAGRTARAGQDG--YAITLLDK 539 (620)
T ss_pred eecCCCchhhHHHHhhcccccccCCc--eEEEeecc
Confidence 99999999999999999999999964 45555544
No 64
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.81 E-value=1.2e-18 Score=174.04 Aligned_cols=103 Identities=18% Similarity=0.254 Sum_probs=95.8
Q ss_pred cCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEE
Q 003502 659 RDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFL 738 (815)
Q Consensus 659 ~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~ 738 (815)
.+++.|+|||+....+++-|..-|...||....+||+-.+.+|+.++..|+.+ .+++|+ +|+.++.||++++..||++
T Consensus 462 ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG-~vrILv-aTDlaSRGlDv~DiTHV~N 539 (629)
T KOG0336|consen 462 MSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSG-EVRILV-ATDLASRGLDVPDITHVYN 539 (629)
T ss_pred cCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcC-ceEEEE-EechhhcCCCchhcceeec
Confidence 35678999999999999999999999999999999999999999999999987 788766 7899999999999999999
Q ss_pred eCCCCCcchHHHHhHhhhcCCCCCc
Q 003502 739 MDPWWNPAVEQQAQDRIHRIGQYKP 763 (815)
Q Consensus 739 ~d~~wnp~~~~QaigR~~R~GQ~~~ 763 (815)
||.|-|-..|.+|+||.+|.|.+-.
T Consensus 540 yDFP~nIeeYVHRvGrtGRaGr~G~ 564 (629)
T KOG0336|consen 540 YDFPRNIEEYVHRVGRTGRAGRTGT 564 (629)
T ss_pred cCCCccHHHHHHHhcccccCCCCcc
Confidence 9999999999999999999997644
No 65
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.81 E-value=2.5e-19 Score=183.80 Aligned_cols=107 Identities=17% Similarity=0.205 Sum_probs=96.1
Q ss_pred ceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEeCCC
Q 003502 663 AKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPW 742 (815)
Q Consensus 663 ~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~~d~~ 742 (815)
.++|||.+....++.+.-.|-..|+++..+||+.++.||-+.+..|++. .+.||| +|++++.|||+.+..+||+|+.|
T Consensus 427 ~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~-eidvLi-aTDvAsRGLDI~gV~tVINy~mP 504 (691)
T KOG0338|consen 427 DRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKE-EIDVLI-ATDVASRGLDIEGVQTVINYAMP 504 (691)
T ss_pred cceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhc-cCCEEE-EechhhccCCccceeEEEeccCc
Confidence 6899999999999999999999999999999999999999999999987 888876 78999999999999999999999
Q ss_pred CCcchHHHHhHhhhcCCCCCcEEEEEEEeCC
Q 003502 743 WNPAVEQQAQDRIHRIGQYKPIRIVRFLIEN 773 (815)
Q Consensus 743 wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~ 773 (815)
-+...|.+|+||.-|.|..- .-+.|+.++
T Consensus 505 ~t~e~Y~HRVGRTARAGRaG--rsVtlvgE~ 533 (691)
T KOG0338|consen 505 KTIEHYLHRVGRTARAGRAG--RSVTLVGES 533 (691)
T ss_pred hhHHHHHHHhhhhhhcccCc--ceEEEeccc
Confidence 99999999999999988642 223355544
No 66
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.81 E-value=1.3e-18 Score=190.40 Aligned_cols=163 Identities=18% Similarity=0.142 Sum_probs=121.0
Q ss_pred CCcccccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEE
Q 003502 115 PPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVI 194 (815)
Q Consensus 115 p~~~~~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV 194 (815)
|......+|+||..+++........+.+..+|+..+|+|||.+||++|-.+.+.+.. +++|.+
T Consensus 159 ~~~s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~-----------------KRVLFL 221 (875)
T COG4096 159 DIDSAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWV-----------------KRVLFL 221 (875)
T ss_pred cccccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchh-----------------heeeEE
Confidence 334456799999999999998888887889999999999999999999998876654 799999
Q ss_pred cC-hHHHHHHHHHHHHhcCCCCcEEEEEeCCCCcCCcccccCCCEEEechhhhHHHhhhccCCCcccccccCcccchhhh
Q 003502 195 CP-VAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKL 273 (815)
Q Consensus 195 ~P-~~ll~qW~~Ei~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~vvi~ty~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (815)
+- ++|+.|-..++..|.|.+.....+..... ...+.|.|+||+++...+...-
T Consensus 222 aDR~~Lv~QA~~af~~~~P~~~~~n~i~~~~~-------~~s~~i~lsTyqt~~~~~~~~~------------------- 275 (875)
T COG4096 222 ADRNALVDQAYGAFEDFLPFGTKMNKIEDKKG-------DTSSEIYLSTYQTMTGRIEQKE------------------- 275 (875)
T ss_pred echHHHHHHHHHHHHHhCCCccceeeeecccC-------CcceeEEEeehHHHHhhhhccc-------------------
Confidence 99 78889999999999996443333221111 1267899999999987653310
Q ss_pred hhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceeeEEEeecceeccCCCch
Q 003502 274 VVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSN 353 (815)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~ 353 (815)
.....+..-.||+||+||||+- ..+
T Consensus 276 ----------------------------------------------------~~~~~f~~g~FDlIvIDEaHRg---i~~ 300 (875)
T COG4096 276 ----------------------------------------------------DEYRRFGPGFFDLIVIDEAHRG---IYS 300 (875)
T ss_pred ----------------------------------------------------cccccCCCCceeEEEechhhhh---HHh
Confidence 0112244446999999999973 223
Q ss_pred HHHHHHhhhcCcEEEeeCCCCC
Q 003502 354 TAKAVLALESSYKWALSGTPLQ 375 (815)
Q Consensus 354 ~~~~~~~l~~~~r~~LTgTPi~ 375 (815)
.++.+...-...+.+|||||-.
T Consensus 301 ~~~~I~dYFdA~~~gLTATP~~ 322 (875)
T COG4096 301 EWSSILDYFDAATQGLTATPKE 322 (875)
T ss_pred hhHHHHHHHHHHHHhhccCccc
Confidence 3445555566677888999965
No 67
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.80 E-value=1.1e-17 Score=189.94 Aligned_cols=102 Identities=24% Similarity=0.343 Sum_probs=85.8
Q ss_pred CceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHH-----HHHHhhcC----CC------CceEEEEecCCCcc
Q 003502 662 SAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARD-----AAINRFTE----DP------DCKIFLMSLKAGGV 726 (815)
Q Consensus 662 ~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~-----~~i~~F~~----~~------~~~vlL~st~~g~~ 726 (815)
+.++|||++....++.|...|...++ ..+||.+++.+|. .++++|.+ +. +. .+|++|++++.
T Consensus 272 g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~-~ILVATdVaer 348 (844)
T TIGR02621 272 GGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGT-VYLVCTSAGEV 348 (844)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccc-eEEeccchhhh
Confidence 46899999999999999999999887 8899999999999 78999986 31 23 45679999999
Q ss_pred cccccccCEEEEeCCCCCcchHHHHhHhhhcCCCCCc--EEEEEE
Q 003502 727 ALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKP--IRIVRF 769 (815)
Q Consensus 727 GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~--V~vy~l 769 (815)
|||+.. ++||+...| ...|+||+||++|.|.... ++++.+
T Consensus 349 GLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 349 GVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred cccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 999986 899987766 4799999999999998644 455444
No 68
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.80 E-value=4.9e-17 Score=168.15 Aligned_cols=128 Identities=20% Similarity=0.260 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHh----------------------CCCcEEEEecCCCHHHHH
Q 003502 645 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK----------------------SGVNCVQLVGSMSIPARD 702 (815)
Q Consensus 645 Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~----------------------~g~~~~~i~G~~~~~~R~ 702 (815)
++-.|..+|..........|+|||-...++.+.=...|.. .+.++.++||+|++++|.
T Consensus 408 RLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRt 487 (708)
T KOG0348|consen 408 RLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERT 487 (708)
T ss_pred hHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHH
Confidence 4556778888877777778999998888877765555542 145689999999999999
Q ss_pred HHHHhhcCCCCceEEEEecCCCcccccccccCEEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeCCcHH
Q 003502 703 AAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIE 776 (815)
Q Consensus 703 ~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~TiE 776 (815)
.++..|.... +.+|++|++++.||||+....||-||||..+..|.+|+||.-|+|-+-.-.. |..+...|
T Consensus 488 s~f~~Fs~~~--~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alL--fL~P~Eae 557 (708)
T KOG0348|consen 488 SVFQEFSHSR--RAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALL--FLLPSEAE 557 (708)
T ss_pred HHHHhhcccc--ceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEE--EecccHHH
Confidence 9999998852 2355688999999999999999999999999999999999999998766443 34444444
No 69
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.79 E-value=1.5e-17 Score=185.64 Aligned_cols=118 Identities=16% Similarity=0.140 Sum_probs=102.6
Q ss_pred chHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 003502 643 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 722 (815)
Q Consensus 643 s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~ 722 (815)
..|..++++.+...-. .+..|||||.+....+.|...|...|+++..++|. ..+|+..+..|..+ ...| +++|+
T Consensus 388 ~~k~~ai~~~i~~~~~--~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~-~g~V-tIATn 461 (745)
T TIGR00963 388 EEKWKAVVDEIKERHA--KGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGR-KGAV-TIATN 461 (745)
T ss_pred HHHHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCC-CceE-EEEec
Confidence 4688889888877743 56899999999999999999999999999999998 67999999999865 4455 44889
Q ss_pred CCcccccccc-------cCEEEEeCCCCCcchHHHHhHhhhcCCCCCcEEE
Q 003502 723 AGGVALNLTV-------ASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRI 766 (815)
Q Consensus 723 ~g~~GlNL~~-------a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~v 766 (815)
.+|.|+|+.. ..+||.+++|-|+..+.|++||++|.|..-....
T Consensus 462 mAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~ 512 (745)
T TIGR00963 462 MAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 512 (745)
T ss_pred cccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEE
Confidence 9999999987 6699999999999999999999999998755333
No 70
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=1.2e-16 Score=181.65 Aligned_cols=130 Identities=14% Similarity=0.124 Sum_probs=105.9
Q ss_pred chHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 003502 643 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 722 (815)
Q Consensus 643 s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~ 722 (815)
..|..+|++.+.... ..+.++||||......+.|...|...|+++..++|.+...++..+..+|+.+ . ++++|+
T Consensus 411 ~~K~~al~~~i~~~~--~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g---~-VlIATd 484 (790)
T PRK09200 411 DEKYKAVIEEVKERH--ETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG---A-VTVATN 484 (790)
T ss_pred HHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC---e-EEEEcc
Confidence 568899999887753 3468999999999999999999999999999999998877776666666544 3 456899
Q ss_pred CCcccccc---cccC-----EEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeCCcHHHHHHHHH
Q 003502 723 AGGVALNL---TVAS-----HVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQ 783 (815)
Q Consensus 723 ~g~~GlNL---~~a~-----~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~TiEe~i~~~~ 783 (815)
.+|.|+|+ +... +||++|+|-|+..+.|++||++|.|+.-.... |+ |.|+.++.+-
T Consensus 485 mAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~--~i---s~eD~l~~~~ 548 (790)
T PRK09200 485 MAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQF--FI---SLEDDLLKRF 548 (790)
T ss_pred chhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEE--EE---cchHHHHHhh
Confidence 99999999 5777 99999999999999999999999998744322 23 3466665543
No 71
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.77 E-value=1.3e-17 Score=181.50 Aligned_cols=108 Identities=18% Similarity=0.183 Sum_probs=97.2
Q ss_pred CceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEeCC
Q 003502 662 SAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDP 741 (815)
Q Consensus 662 ~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~~d~ 741 (815)
+...||||..+...+.++..|...|++...+||+++.++|+..-++|.++ +..|++ +|.|.|.|||=++...||+||+
T Consensus 230 ~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~-~~~iiV-AT~AFGMGIdKpdVRfViH~~l 307 (590)
T COG0514 230 SKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLND-EIKVMV-ATNAFGMGIDKPDVRFVIHYDL 307 (590)
T ss_pred CCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcC-CCcEEE-EeccccCccCCCCceEEEEecC
Confidence 34569999999999999999999999999999999999999999999987 777766 7799999999999999999999
Q ss_pred CCCcchHHHHhHhhhcCCCCCcEEEEEEEeCC
Q 003502 742 WWNPAVEQQAQDRIHRIGQYKPIRIVRFLIEN 773 (815)
Q Consensus 742 ~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~ 773 (815)
|-+...|.|=+|||+|-|..-.+.. |+...
T Consensus 308 P~s~EsYyQE~GRAGRDG~~a~ail--l~~~~ 337 (590)
T COG0514 308 PGSIESYYQETGRAGRDGLPAEAIL--LYSPE 337 (590)
T ss_pred CCCHHHHHHHHhhccCCCCcceEEE--eeccc
Confidence 9999999999999999998766444 44443
No 72
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.77 E-value=1.4e-17 Score=175.46 Aligned_cols=113 Identities=17% Similarity=0.165 Sum_probs=98.1
Q ss_pred HHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccC
Q 003502 655 FMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVAS 734 (815)
Q Consensus 655 ~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~ 734 (815)
.++..-+-.+.||||....-++-++.+|...|+++..|.|.|++.+|..+++..++- .++||+ ||+..+.|||-..+|
T Consensus 265 ~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f-~~rILV-sTDLtaRGIDa~~vN 342 (980)
T KOG4284|consen 265 HVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAF-RVRILV-STDLTARGIDADNVN 342 (980)
T ss_pred HHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhc-eEEEEE-ecchhhccCCccccc
Confidence 333333556789999999999999999999999999999999999999999999875 677755 999999999999999
Q ss_pred EEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEE
Q 003502 735 HVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFL 770 (815)
Q Consensus 735 ~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~ 770 (815)
.||++|+|-+..+|.+|||||+|+|.. ...|-.+.
T Consensus 343 LVVNiD~p~d~eTY~HRIGRAgRFG~~-G~aVT~~~ 377 (980)
T KOG4284|consen 343 LVVNIDAPADEETYFHRIGRAGRFGAH-GAAVTLLE 377 (980)
T ss_pred eEEecCCCcchHHHHHHhhhccccccc-ceeEEEec
Confidence 999999999999999999999999964 44444343
No 73
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.77 E-value=2.4e-17 Score=170.88 Aligned_cols=136 Identities=21% Similarity=0.223 Sum_probs=114.3
Q ss_pred chHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhC--CCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEe
Q 003502 643 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS--GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMS 720 (815)
Q Consensus 643 s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~--g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~s 720 (815)
..|+..|...|+.+ ...|.|||...-..+.++...+.+. |++...++|.+++..|.++..+|... -.++|++
T Consensus 298 ~~Ki~~L~sFI~sh----lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~--~~~vLF~ 371 (758)
T KOG0343|consen 298 EDKIDMLWSFIKSH----LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRK--RAVVLFC 371 (758)
T ss_pred hhHHHHHHHHHHhc----cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHh--cceEEEe
Confidence 34677777777655 4479999999999999999998764 99999999999999999999999873 4566778
Q ss_pred cCCCcccccccccCEEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeCCcHHHHHHHHHHHHH
Q 003502 721 LKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKK 787 (815)
Q Consensus 721 t~~g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~TiEe~i~~~~~~K~ 787 (815)
|++++.|||++..+.||-+|.|-+..+|++|.||.-|++..-+..+| ..-+-||.|+..++.|.
T Consensus 372 TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~---L~psEeE~~l~~Lq~k~ 435 (758)
T KOG0343|consen 372 TDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLM---LTPSEEEAMLKKLQKKK 435 (758)
T ss_pred ehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEE---EcchhHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999877665543 33445688888888775
No 74
>PRK09401 reverse gyrase; Reviewed
Probab=99.76 E-value=6.1e-17 Score=194.41 Aligned_cols=103 Identities=12% Similarity=0.138 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEccChhH---HHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEe-
Q 003502 645 KIEALREEIRFMVERDGSAKGIVFSQFTSF---LDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMS- 720 (815)
Q Consensus 645 Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~---~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~s- 720 (815)
|...|.+++..+ +.++|||++.... ++.|...|...|+++..+||++ + +.+++|.+| .++||+.+
T Consensus 316 k~~~L~~ll~~l-----~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l---~--~~l~~F~~G-~~~VLVata 384 (1176)
T PRK09401 316 SVEKLVELVKRL-----GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF---E--RKFEKFEEG-EVDVLVGVA 384 (1176)
T ss_pred HHHHHHHHHHhc-----CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH---H--HHHHHHHCC-CCCEEEEec
Confidence 555666666533 2478999998777 9999999999999999999998 2 346999998 89999976
Q ss_pred --cCCCcccccccc-cCEEEEeCCCC------CcchHHHHhHhhhcC
Q 003502 721 --LKAGGVALNLTV-ASHVFLMDPWW------NPAVEQQAQDRIHRI 758 (815)
Q Consensus 721 --t~~g~~GlNL~~-a~~vI~~d~~w------np~~~~QaigR~~R~ 758 (815)
|++++.|||++. ..+||||+.|- ....+..++||+..+
T Consensus 385 s~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 385 SYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred CCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 799999999998 89999999997 567788888988643
No 75
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.76 E-value=2.1e-16 Score=169.31 Aligned_cols=95 Identities=14% Similarity=0.161 Sum_probs=73.8
Q ss_pred HHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCC--CcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccc
Q 003502 651 EEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSG--VNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVAL 728 (815)
Q Consensus 651 ~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g--~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~Gl 728 (815)
+.+.+.+...++.|+|||+.....++.+...|+..| +.+..++|.++..+|.+.. ... +|++|++++.||
T Consensus 261 ~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~-------~~~-iLVaTdv~~rGi 332 (357)
T TIGR03158 261 EEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM-------QFD-ILLGTSTVDVGV 332 (357)
T ss_pred HHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc-------cCC-EEEEecHHhccc
Confidence 333333333456799999999999999999999865 5788899999998886543 333 556889999999
Q ss_pred cccccCEEEEeCCCCCcchHHHHhHhhh
Q 003502 729 NLTVASHVFLMDPWWNPAVEQQAQDRIH 756 (815)
Q Consensus 729 NL~~a~~vI~~d~~wnp~~~~QaigR~~ 756 (815)
|+... +|| ++ +-++..|.||+||++
T Consensus 333 Di~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 333 DFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 99864 666 56 568899999999974
No 76
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.76 E-value=1.6e-16 Score=179.46 Aligned_cols=124 Identities=15% Similarity=0.124 Sum_probs=102.0
Q ss_pred HHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCC-CcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCccccc
Q 003502 651 EEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSG-VNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALN 729 (815)
Q Consensus 651 ~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g-~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlN 729 (815)
+.|..+++++ ..+|||++.+.+++.+...|...+ ..+..-||+.+.++|..+-++|.++ +.++++ +|.....|||
T Consensus 244 ~~i~~~v~~~--~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G-~lravV-~TSSLELGID 319 (814)
T COG1201 244 ERIAELVKKH--RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEG-ELKAVV-ATSSLELGID 319 (814)
T ss_pred HHHHHHHhhc--CcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcC-CceEEE-Eccchhhccc
Confidence 3334444344 488999999999999999999887 8888899999999999999999998 688877 6799999999
Q ss_pred ccccCEEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeCCcHHHHHHH
Q 003502 730 LTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILK 781 (815)
Q Consensus 730 L~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~TiEe~i~~ 781 (815)
.-..+.||.+..|-.-+...||+||+++ +-..+.-..+++.+ .++.+--
T Consensus 320 iG~vdlVIq~~SP~sV~r~lQRiGRsgH--r~~~~Skg~ii~~~-r~dllE~ 368 (814)
T COG1201 320 IGDIDLVIQLGSPKSVNRFLQRIGRAGH--RLGEVSKGIIIAED-RDDLLEC 368 (814)
T ss_pred cCCceEEEEeCCcHHHHHHhHhcccccc--ccCCcccEEEEecC-HHHHHHH
Confidence 9999999999999999999999999976 23345556666666 4444433
No 77
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.76 E-value=3.1e-17 Score=168.64 Aligned_cols=114 Identities=17% Similarity=0.169 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 003502 645 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 724 (815)
Q Consensus 645 Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g 724 (815)
++..+..+|++...+ .|+|||+..-.+.+++...|....+++..|||..++..|..+..+|.+. +. .+|++|+++
T Consensus 316 ~f~ll~~~LKk~~~~---~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~ka-es-gIL~cTDVa 390 (543)
T KOG0342|consen 316 RFSLLYTFLKKNIKR---YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKA-ES-GILVCTDVA 390 (543)
T ss_pred hHHHHHHHHHHhcCC---ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhc-cc-ceEEecchh
Confidence 355666677665432 7999999999999999999999999999999999999999999999984 32 356688999
Q ss_pred cccccccccCEEEEeCCCCCcchHHHHhHhhhcCCCCCc
Q 003502 725 GVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKP 763 (815)
Q Consensus 725 ~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~ 763 (815)
+.|+|++..+.||-||||-+|..|++|+||..|-|-+-.
T Consensus 391 ARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~ 429 (543)
T KOG0342|consen 391 ARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGK 429 (543)
T ss_pred hccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCce
Confidence 999999999999999999999999999999999776543
No 78
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.75 E-value=7.1e-16 Score=171.59 Aligned_cols=130 Identities=17% Similarity=0.200 Sum_probs=102.5
Q ss_pred chHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 003502 643 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 722 (815)
Q Consensus 643 s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~ 722 (815)
..|..+|++++..+.. .+..+||||......+.|...|...|+++..++|.++ +|+..+..|...+ .. ++++|+
T Consensus 456 ~~K~~aL~~~i~~~~~--~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~-g~-VlVATd 529 (656)
T PRK12898 456 AAKWAAVAARVRELHA--QGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQR-GR-ITVATN 529 (656)
T ss_pred HHHHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCC-Cc-EEEEcc
Confidence 5688999999887633 3467999999999999999999999999999999864 6666666666542 23 556999
Q ss_pred CCccccccc---ccC-----EEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeCCcHHHHHHHHH
Q 003502 723 AGGVALNLT---VAS-----HVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQ 783 (815)
Q Consensus 723 ~g~~GlNL~---~a~-----~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~TiEe~i~~~~ 783 (815)
++|.|+|+. ... +||++|.|-|...|.|++||++|.|..-.+ +.|+ |.|+.++.+-
T Consensus 530 mAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s--~~~i---s~eD~l~~~~ 593 (656)
T PRK12898 530 MAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSY--EAIL---SLEDDLLQSF 593 (656)
T ss_pred chhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEE--EEEe---chhHHHHHhh
Confidence 999999998 444 999999999999999999999999976433 2233 3455655443
No 79
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.75 E-value=1.2e-16 Score=157.58 Aligned_cols=116 Identities=21% Similarity=0.227 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 003502 645 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 724 (815)
Q Consensus 645 Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g 724 (815)
|-..|+..|+..-++ ++..++||++.+.+...|...|+..++.+..+|+-|++.+|...+.+|+.+ ..++++ +|+++
T Consensus 238 kdaYLv~~Lr~~~~~-~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~-~~~ili-aTDVA 314 (442)
T KOG0340|consen 238 KDAYLVHLLRDFENK-ENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSN-AARILI-ATDVA 314 (442)
T ss_pred hHHHHHHHHhhhhhc-cCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhc-CccEEE-Eechh
Confidence 334566666655433 567899999999999999999999999999999999999999999999987 778766 77999
Q ss_pred cccccccccCEEEEeCCCCCcchHHHHhHhhhcCCCCCc
Q 003502 725 GVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKP 763 (815)
Q Consensus 725 ~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~ 763 (815)
+.|||++....||++|.|-.|..|++|.||.-|.|..-.
T Consensus 315 sRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~ 353 (442)
T KOG0340|consen 315 SRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGM 353 (442)
T ss_pred hcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcc
Confidence 999999999999999999999999999999999887654
No 80
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.75 E-value=3.2e-16 Score=160.05 Aligned_cols=134 Identities=19% Similarity=0.201 Sum_probs=107.5
Q ss_pred chHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhC--CCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEe
Q 003502 643 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS--GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMS 720 (815)
Q Consensus 643 s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~--g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~s 720 (815)
.-|+..|+.+|.. ....|+|||-..-...++....|... +++.+.+||.++..+|..++..|.+. .-.| |++
T Consensus 240 ~eK~~~lv~~L~~----~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~-~~~v-l~~ 313 (567)
T KOG0345|consen 240 DEKLSQLVHLLNN----NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKL-SNGV-LFC 313 (567)
T ss_pred HHHHHHHHHHHhc----cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhc-cCce-EEe
Confidence 4577788887775 34589999988888888888888764 67889999999999999999999983 3334 558
Q ss_pred cCCCcccccccccCEEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeCCcHHHHHHHHHHHH
Q 003502 721 LKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKK 786 (815)
Q Consensus 721 t~~g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~TiEe~i~~~~~~K 786 (815)
|++++.|||+++.+.||.||||-+|+.+.+|.||..|.|..-...|+ +.+ -|+...+.+..|
T Consensus 314 TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivf--l~p--~E~aYveFl~i~ 375 (567)
T KOG0345|consen 314 TDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVF--LNP--REEAYVEFLRIK 375 (567)
T ss_pred ehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEE--ecc--cHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999987665553 222 444444544444
No 81
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.74 E-value=4.3e-16 Score=176.39 Aligned_cols=110 Identities=18% Similarity=0.194 Sum_probs=89.4
Q ss_pred CceEEEEccChhHHHHHHHHHHhC--CCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEe
Q 003502 662 SAKGIVFSQFTSFLDLINYSLHKS--GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLM 739 (815)
Q Consensus 662 ~~KvIIFs~~~~~~~~l~~~L~~~--g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~~ 739 (815)
+.++|||+.....++.+...|... ++.+..+||++++ +++.+++|...+..+|+ ++|+++++||+++++++||.+
T Consensus 395 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq--~eq~l~~ff~~gk~kIL-VATdIAERGIDIp~V~~VID~ 471 (675)
T PHA02653 395 GSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPN--IDEILEKVYSSKNPSII-ISTPYLESSVTIRNATHVYDT 471 (675)
T ss_pred CCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCH--HHHHHHHHhccCceeEE-eccChhhccccccCeeEEEEC
Confidence 358999999999999999999887 7999999999985 45777888433255655 599999999999999999999
Q ss_pred C---CC---------CCcchHHHHhHhhhcCCCCCcEEEEEEEeCCcHHH
Q 003502 740 D---PW---------WNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEE 777 (815)
Q Consensus 740 d---~~---------wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~TiEe 777 (815)
+ .| .+.+.+.||.||++|. ++=.+|+|+++.....
T Consensus 472 G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~rLyt~~~~~p 518 (675)
T PHA02653 472 GRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYVYFYDLDLLKP 518 (675)
T ss_pred CCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEEEEECHHHhHH
Confidence 7 22 2667889999999997 4578888998876543
No 82
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.74 E-value=3.8e-16 Score=180.01 Aligned_cols=95 Identities=12% Similarity=0.148 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhC--CCcEEEEecCCC--HHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEeCCC---CCc-
Q 003502 674 FLDLINYSLHKS--GVNCVQLVGSMS--IPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPW---WNP- 745 (815)
Q Consensus 674 ~~~~l~~~L~~~--g~~~~~i~G~~~--~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~~d~~---wnp- 745 (815)
-.+.+++.|... +.++.++||+++ ..+++++++.|.++ ++.||+ +|+..+.|+|++..+.|+++|.+ ..|
T Consensus 438 G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g-~~~ILV-gT~~iakG~d~p~v~lV~il~aD~~l~~pd 515 (679)
T PRK05580 438 GTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARG-EADILI-GTQMLAKGHDFPNVTLVGVLDADLGLFSPD 515 (679)
T ss_pred cHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcC-CCCEEE-EChhhccCCCCCCcCEEEEEcCchhccCCc
Confidence 345566666654 788899999985 46789999999987 777776 77999999999999999888764 233
Q ss_pred --------chHHHHhHhhhcCCCCCcEEEEEEE
Q 003502 746 --------AVEQQAQDRIHRIGQYKPIRIVRFL 770 (815)
Q Consensus 746 --------~~~~QaigR~~R~GQ~~~V~vy~l~ 770 (815)
..+.|+.||++|.|....|.+...-
T Consensus 516 fra~Er~~~~l~q~~GRagR~~~~g~viiqT~~ 548 (679)
T PRK05580 516 FRASERTFQLLTQVAGRAGRAEKPGEVLIQTYH 548 (679)
T ss_pred cchHHHHHHHHHHHHhhccCCCCCCEEEEEeCC
Confidence 5799999999998877667665443
No 83
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.73 E-value=6.1e-16 Score=186.22 Aligned_cols=95 Identities=13% Similarity=0.097 Sum_probs=83.9
Q ss_pred CceEEEEccChhHHHHHHHHHHhCC---------------------------------CcEEEEecCCCHHHHHHHHHhh
Q 003502 662 SAKGIVFSQFTSFLDLINYSLHKSG---------------------------------VNCVQLVGSMSIPARDAAINRF 708 (815)
Q Consensus 662 ~~KvIIFs~~~~~~~~l~~~L~~~g---------------------------------~~~~~i~G~~~~~~R~~~i~~F 708 (815)
+.++|||++.+..++.+...|+... +.+...||+++.++|..+.+.|
T Consensus 244 ~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~f 323 (1490)
T PRK09751 244 HRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQAL 323 (1490)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHH
Confidence 3689999999999999998886531 1145678999999999999999
Q ss_pred cCCCCceEEEEecCCCcccccccccCEEEEeCCCCCcchHHHHhHhhhcC
Q 003502 709 TEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRI 758 (815)
Q Consensus 709 ~~~~~~~vlL~st~~g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~ 758 (815)
+++ .+++++ +|.+.+.|||+..+++||+++.|.+...+.|++||++|.
T Consensus 324 K~G-~LrvLV-ATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 324 KSG-ELRCVV-ATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HhC-CceEEE-eCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 998 777765 889999999999999999999999999999999999995
No 84
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.72 E-value=3e-16 Score=161.11 Aligned_cols=127 Identities=16% Similarity=0.184 Sum_probs=113.0
Q ss_pred chHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 003502 643 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 722 (815)
Q Consensus 643 s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~ 722 (815)
..|+.+|+..|-.....+ +||||..-...++-|...|...|+++..++|++.+.+|.+.+.+|+.. ...|++ .|+
T Consensus 452 ~~Kl~wl~~~L~~f~S~g---kvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk-~~~Vlv-atD 526 (731)
T KOG0339|consen 452 EKKLNWLLRHLVEFSSEG---KVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKK-RKPVLV-ATD 526 (731)
T ss_pred HHHHHHHHHHhhhhccCC---cEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhc-CCceEE-Eee
Confidence 458888888887765544 999999999999999999999999999999999999999999999986 566655 779
Q ss_pred CCcccccccccCEEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeCCcHH
Q 003502 723 AGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIE 776 (815)
Q Consensus 723 ~g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~TiE 776 (815)
++..|+++....+||+||..-.-..+.|+|||..|.|-+ =..|.|+++...+
T Consensus 527 vaargldI~~ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 527 VAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred HhhcCCCccccceeecccccchhHHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 999999999999999999999999999999999999977 5678899886655
No 85
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.72 E-value=4.9e-16 Score=178.38 Aligned_cols=107 Identities=21% Similarity=0.255 Sum_probs=84.5
Q ss_pred cchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcC-hHH
Q 003502 121 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VAA 199 (815)
Q Consensus 121 ~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P-~~l 199 (815)
.|+|.|..++.-.+.. ..+.|++-+||+|||++|...|......++ ++++-||| .+|
T Consensus 31 el~~~qq~av~~~~~~----~~N~li~aPTgsGKTlIA~lai~~~l~~~~------------------~k~vYivPlkAL 88 (766)
T COG1204 31 ELFNPQQEAVEKGLLS----DENVLISAPTGSGKTLIALLAILSTLLEGG------------------GKVVYIVPLKAL 88 (766)
T ss_pred HhhHHHHHHhhccccC----CCcEEEEcCCCCchHHHHHHHHHHHHHhcC------------------CcEEEEeChHHH
Confidence 6999999988654433 368999999999999999777776654432 58999999 788
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEeCCCCcCCcccccCCCEEEechhhhHHHhh
Q 003502 200 VTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYR 251 (815)
Q Consensus 200 l~qW~~Ei~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~vvi~ty~~l~~~~~ 251 (815)
..+-.+++.+|- ...++|.+++|+..... ..+.+++|+|+||+.+....+
T Consensus 89 a~Ek~~~~~~~~-~~GirV~~~TgD~~~~~-~~l~~~~ViVtT~EK~Dsl~R 138 (766)
T COG1204 89 AEEKYEEFSRLE-ELGIRVGISTGDYDLDD-ERLARYDVIVTTPEKLDSLTR 138 (766)
T ss_pred HHHHHHHhhhHH-hcCCEEEEecCCcccch-hhhccCCEEEEchHHhhHhhh
Confidence 899999999333 33799999999876443 567899999999999876543
No 86
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.70 E-value=8.2e-17 Score=167.03 Aligned_cols=100 Identities=14% Similarity=0.192 Sum_probs=91.8
Q ss_pred eEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEeCCCC
Q 003502 664 KGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWW 743 (815)
Q Consensus 664 KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~~d~~w 743 (815)
+.||||+..+-+..|.-+|...+++...+|..|.+.+|-+.+.+|.+. ...+|++|++++.|||++...|||+|..|-
T Consensus 465 rTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~--~~~VLiaTDVAARGLDIp~V~HVIHYqVPr 542 (731)
T KOG0347|consen 465 RTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQS--PSGVLIATDVAARGLDIPGVQHVIHYQVPR 542 (731)
T ss_pred ceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcC--CCeEEEeehhhhccCCCCCcceEEEeecCC
Confidence 889999999999999999999999999999999999999999999984 445677889999999999999999999999
Q ss_pred CcchHHHHhHhhhcCCCCCcEEE
Q 003502 744 NPAVEQQAQDRIHRIGQYKPIRI 766 (815)
Q Consensus 744 np~~~~QaigR~~R~GQ~~~V~v 766 (815)
+...|++|-||.-|.+. ..|.|
T Consensus 543 tseiYVHRSGRTARA~~-~Gvsv 564 (731)
T KOG0347|consen 543 TSEIYVHRSGRTARANS-EGVSV 564 (731)
T ss_pred ccceeEecccccccccC-CCeEE
Confidence 99999999999999874 34554
No 87
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.70 E-value=9.4e-17 Score=155.65 Aligned_cols=122 Identities=15% Similarity=0.233 Sum_probs=102.8
Q ss_pred chHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 003502 643 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 722 (815)
Q Consensus 643 s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~ 722 (815)
+.|+.-|--+..++ .-.+.||||++....++|+.-+...|+.+..+|..|.++.|..+...|++| .++.++ .|+
T Consensus 307 ~qKvhCLntLfskL----qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G-~crnLV-ctD 380 (459)
T KOG0326|consen 307 RQKVHCLNTLFSKL----QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNG-KCRNLV-CTD 380 (459)
T ss_pred hhhhhhHHHHHHHh----cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhcc-ccceee-ehh
Confidence 34454444444333 224779999999999999999999999999999999999999999999998 899888 559
Q ss_pred CCcccccccccCEEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeC
Q 003502 723 AGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIE 772 (815)
Q Consensus 723 ~g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~ 772 (815)
....|+|+|..|.||+||.|-|+.+|.+||||.+|+|-- -...+|++-
T Consensus 381 L~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhl--GlAInLity 428 (459)
T KOG0326|consen 381 LFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHL--GLAINLITY 428 (459)
T ss_pred hhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCc--ceEEEEEeh
Confidence 999999999999999999999999999999999999953 334455543
No 88
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.69 E-value=1.8e-15 Score=168.20 Aligned_cols=94 Identities=15% Similarity=0.181 Sum_probs=71.2
Q ss_pred HHHHHHHHhC--CCcEEEEecCCCHHHH--HHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEeCCCC---Cc---
Q 003502 676 DLINYSLHKS--GVNCVQLVGSMSIPAR--DAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWW---NP--- 745 (815)
Q Consensus 676 ~~l~~~L~~~--g~~~~~i~G~~~~~~R--~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~~d~~w---np--- 745 (815)
+.+++.|... +.++.++|++++...+ +++++.|.++ ++.|++ +|+..+.|+|++.++.|+++|.+- .|
T Consensus 272 e~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g-~~~ILV-gT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~r 349 (505)
T TIGR00595 272 EQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANG-KADILI-GTQMIAKGHHFPNVTLVGVLDADSGLHSPDFR 349 (505)
T ss_pred HHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcC-CCCEEE-eCcccccCCCCCcccEEEEEcCcccccCcccc
Confidence 3444445443 6788999999876655 8899999987 777766 789999999999999998766542 23
Q ss_pred ------chHHHHhHhhhcCCCCCcEEEEEEEe
Q 003502 746 ------AVEQQAQDRIHRIGQYKPIRIVRFLI 771 (815)
Q Consensus 746 ------~~~~QaigR~~R~GQ~~~V~vy~l~~ 771 (815)
..+.|+.||++|.+..-.|.|..+..
T Consensus 350 a~E~~~~ll~q~~GRagR~~~~g~viiqt~~p 381 (505)
T TIGR00595 350 AAERGFQLLTQVAGRAGRAEDPGQVIIQTYNP 381 (505)
T ss_pred hHHHHHHHHHHHHhccCCCCCCCEEEEEeCCC
Confidence 57899999999988766676554433
No 89
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.69 E-value=1.2e-16 Score=146.54 Aligned_cols=121 Identities=25% Similarity=0.326 Sum_probs=108.9
Q ss_pred chHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 003502 643 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 722 (815)
Q Consensus 643 s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~ 722 (815)
+.|+..+.+.+..... .+.++|||+.....+..+...|...++++..++|+++..+|..+++.|+++ ... +|++|.
T Consensus 11 ~~k~~~i~~~i~~~~~--~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~-ili~t~ 86 (131)
T cd00079 11 DEKLEALLELLKEHLK--KGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREG-EIV-VLVATD 86 (131)
T ss_pred HHHHHHHHHHHHhccc--CCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcC-CCc-EEEEcC
Confidence 3699999999887643 467999999999999999999999999999999999999999999999987 444 455889
Q ss_pred CCcccccccccCEEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEE
Q 003502 723 AGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIV 767 (815)
Q Consensus 723 ~g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy 767 (815)
++++|+|++.+++||+++++|++..+.|++||++|.||+..|.+|
T Consensus 87 ~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 87 VIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999999999999999999999998777764
No 90
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.69 E-value=2e-15 Score=175.27 Aligned_cols=107 Identities=21% Similarity=0.227 Sum_probs=91.4
Q ss_pred ceEEEEccChhHHHHHHHHHHh---CCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEe
Q 003502 663 AKGIVFSQFTSFLDLINYSLHK---SGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLM 739 (815)
Q Consensus 663 ~KvIIFs~~~~~~~~l~~~L~~---~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~~ 739 (815)
.++|||+.....++.+...|.. .++.++.+||+++.++|.++++.|.++ ..+|+| +|++++.||+++++++||.+
T Consensus 210 g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G-~rkVlV-ATnIAErgItIp~V~~VID~ 287 (819)
T TIGR01970 210 GSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQG-RRKVVL-ATNIAETSLTIEGIRVVIDS 287 (819)
T ss_pred CcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccC-CeEEEE-ecchHhhcccccCceEEEEc
Confidence 5899999999999999999986 478899999999999999999999876 566655 89999999999999999998
Q ss_pred CCC----CCcch--------------HHHHhHhhhcCCCCCcEEEEEEEeCCc
Q 003502 740 DPW----WNPAV--------------EQQAQDRIHRIGQYKPIRIVRFLIENT 774 (815)
Q Consensus 740 d~~----wnp~~--------------~~QaigR~~R~GQ~~~V~vy~l~~~~T 774 (815)
+.+ +||.. +.||.||++|. ++=..|+|+++..
T Consensus 288 Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~ 337 (819)
T TIGR01970 288 GLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQ 337 (819)
T ss_pred CcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHH
Confidence 865 45544 78999999987 4557888987653
No 91
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.69 E-value=2.4e-15 Score=181.12 Aligned_cols=86 Identities=17% Similarity=0.228 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHhcCCCceEEEEccCh---hHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEe---
Q 003502 647 EALREEIRFMVERDGSAKGIVFSQFT---SFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMS--- 720 (815)
Q Consensus 647 ~~l~~~l~~~~~~~~~~KvIIFs~~~---~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~s--- 720 (815)
..|.++|+.+ +.++|||++.. ..++.|...|...|+++..+||+++ +..+++|.+| .++||+.+
T Consensus 316 ~~L~~ll~~l-----~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~Fr~G-~~~vLVata~~ 385 (1171)
T TIGR01054 316 ETLLEIVKKL-----GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYEKFAEG-EIDVLIGVASY 385 (1171)
T ss_pred HHHHHHHHHc-----CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHHHHHcC-CCCEEEEeccc
Confidence 4455555433 25789999998 9999999999999999999999986 3689999998 89999976
Q ss_pred cCCCcccccccc-cCEEEEeCCC
Q 003502 721 LKAGGVALNLTV-ASHVFLMDPW 742 (815)
Q Consensus 721 t~~g~~GlNL~~-a~~vI~~d~~ 742 (815)
|++++.|||++. .++|||||+|
T Consensus 386 tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 386 YGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred cCcccccCCCCccccEEEEECCC
Confidence 699999999998 7999999987
No 92
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.68 E-value=1.4e-14 Score=143.87 Aligned_cols=125 Identities=17% Similarity=0.250 Sum_probs=103.4
Q ss_pred chHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 003502 643 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 722 (815)
Q Consensus 643 s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~ 722 (815)
..|+.+|.+ |...+.- ...||||..+.++.+|...|...|..+..++|.++..+|..++++|+.+ ...||+ +|.
T Consensus 315 ~~K~~~l~~-lyg~~ti---gqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g-~~kVLi-tTn 388 (477)
T KOG0332|consen 315 DDKYQALVN-LYGLLTI---GQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREG-KEKVLI-TTN 388 (477)
T ss_pred hhHHHHHHH-HHhhhhh---hheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcC-cceEEE-Eec
Confidence 457777777 3343332 3679999999999999999999999999999999999999999999997 667765 889
Q ss_pred CCcccccccccCEEEEeCCCC------CcchHHHHhHhhhcCCCCCcEEEEEEEe-CCcH
Q 003502 723 AGGVALNLTVASHVFLMDPWW------NPAVEQQAQDRIHRIGQYKPIRIVRFLI-ENTI 775 (815)
Q Consensus 723 ~g~~GlNL~~a~~vI~~d~~w------np~~~~QaigR~~R~GQ~~~V~vy~l~~-~~Ti 775 (815)
+.++|+|.+..+.||+||+|- .+.+|.+||||.+|+|.+ .+- ++|+- +++.
T Consensus 389 V~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkk-G~a-~n~v~~~~s~ 446 (477)
T KOG0332|consen 389 VCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKK-GLA-INLVDDKDSM 446 (477)
T ss_pred hhhcccccceEEEEEecCCccccCCCCCHHHHHHHhccccccccc-ceE-EEeecccCcH
Confidence 999999999999999999874 458999999999999965 333 34553 3443
No 93
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.68 E-value=4.1e-15 Score=173.37 Aligned_cols=117 Identities=15% Similarity=0.130 Sum_probs=95.2
Q ss_pred CceEEEEccChhHHHHHH----HHHHhCC----CcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCccccccccc
Q 003502 662 SAKGIVFSQFTSFLDLIN----YSLHKSG----VNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVA 733 (815)
Q Consensus 662 ~~KvIIFs~~~~~~~~l~----~~L~~~g----~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a 733 (815)
+-|+|+|+.++..+..+. ..+...+ ..+....|++...+|..+...|+.+ +..+++ +|.+...|+++-..
T Consensus 306 ~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g-~~~~~~-st~AlelgidiG~l 383 (851)
T COG1205 306 GIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEG-ELLGVI-ATNALELGIDIGSL 383 (851)
T ss_pred CceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcC-CccEEe-cchhhhhceeehhh
Confidence 479999999999998886 4444445 5577889999999999999999997 777666 89999999999999
Q ss_pred CEEEEeCCCC-CcchHHHHhHhhhcCCCCCcEEEEEEEeCCcHHHHHHHH
Q 003502 734 SHVFLMDPWW-NPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKL 782 (815)
Q Consensus 734 ~~vI~~d~~w-np~~~~QaigR~~R~GQ~~~V~vy~l~~~~TiEe~i~~~ 782 (815)
+.||..-.|- .-....|+.||++|-||.-. ++...-.+.++..+...
T Consensus 384 davi~~g~P~~s~~~~~Q~~GRaGR~~~~~l--~~~v~~~~~~d~yy~~~ 431 (851)
T COG1205 384 DAVIAYGYPGVSVLSFRQRAGRAGRRGQESL--VLVVLRSDPLDSYYLRH 431 (851)
T ss_pred hhHhhcCCCCchHHHHHHhhhhccCCCCCce--EEEEeCCCccchhhhhC
Confidence 9999999888 77999999999999995433 22233367777776554
No 94
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.67 E-value=1.3e-15 Score=160.64 Aligned_cols=115 Identities=17% Similarity=0.093 Sum_probs=103.4
Q ss_pred chHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHH-HhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEec
Q 003502 643 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSL-HKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSL 721 (815)
Q Consensus 643 s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L-~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st 721 (815)
-.|+-++.++|..- -...+|||.|..+.+..|...| ...++++..|||..++.+|.+.+++|+.+ .+.|++ .|
T Consensus 372 ~~K~lA~rq~v~~g----~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g-~IwvLi-cT 445 (593)
T KOG0344|consen 372 KGKLLALRQLVASG----FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIG-KIWVLI-CT 445 (593)
T ss_pred hhHHHHHHHHHhcc----CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhcc-CeeEEE-eh
Confidence 45777787777654 3468899999999999999999 77899999999999999999999999998 899877 67
Q ss_pred CCCcccccccccCEEEEeCCCCCcchHHHHhHhhhcCCCCCc
Q 003502 722 KAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKP 763 (815)
Q Consensus 722 ~~g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~ 763 (815)
++.+.|+|++++|.||+||.|-+-..|.++|||.+|.|+.-.
T Consensus 446 dll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~ 487 (593)
T KOG0344|consen 446 DLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGK 487 (593)
T ss_pred hhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcc
Confidence 999999999999999999999999999999999999998644
No 95
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.66 E-value=4.9e-16 Score=154.33 Aligned_cols=127 Identities=21% Similarity=0.196 Sum_probs=105.6
Q ss_pred hHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCC
Q 003502 644 TKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKA 723 (815)
Q Consensus 644 ~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~ 723 (815)
.|+-.|++.|.+ ...+||||+.-..-.+.|.++|-..|+..+.|||+-.+++|...|+.|+.+ .-.|++ +|++
T Consensus 408 aKiVylLeCLQK-----T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~g-kKDVLV-ATDV 480 (610)
T KOG0341|consen 408 AKIVYLLECLQK-----TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAG-KKDVLV-ATDV 480 (610)
T ss_pred hhhhhHHHHhcc-----CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcC-CCceEE-Eecc
Confidence 355555555532 346899999999999999999999999999999999999999999999997 556655 8899
Q ss_pred CcccccccccCEEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeCCcHHHHH
Q 003502 724 GGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERI 779 (815)
Q Consensus 724 g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~TiEe~i 779 (815)
++-|||+++..|||+||.|-.-..|.+||||.+|-|.+--.+ .|+-+++-|.-+
T Consensus 481 ASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiAT--TfINK~~~esvL 534 (610)
T KOG0341|consen 481 ASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIAT--TFINKNQEESVL 534 (610)
T ss_pred hhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceee--eeecccchHHHH
Confidence 999999999999999999999999999999999999875433 245555444433
No 96
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.66 E-value=5.2e-16 Score=151.58 Aligned_cols=165 Identities=25% Similarity=0.410 Sum_probs=107.8
Q ss_pred ccchHHHHHHHHHHHHHhhcc--CCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcC-
Q 003502 120 TPLLRYQKEWLAWALKQEESA--IRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP- 196 (815)
Q Consensus 120 ~~L~~yQ~~~~~~~~~~~~~~--~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P- 196 (815)
..|+|||.+++..+...+... .+.++|..+||+|||++++.++..+. .++|||||
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~----------------------~~~l~~~p~ 59 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA----------------------RKVLIVAPN 59 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH----------------------CEEEEEESS
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc----------------------cceeEecCH
Confidence 469999999999988877665 56889999999999999998888776 27899999
Q ss_pred hHHHHHHHHHHHHhcCCCCcEEEEEeC-----------CCCc-C--CcccccCCCEEEechhhhHHHhhhccCCCccccc
Q 003502 197 VAAVTQWVSEINRFTSVGSTKVLIYHG-----------SNRE-R--SAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQ 262 (815)
Q Consensus 197 ~~ll~qW~~Ei~~~~~~~~~~v~~~~g-----------~~~~-~--~~~~~~~~~vvi~ty~~l~~~~~~~~~~~~~~~~ 262 (815)
.+|+.||.++|..+... ...+..... .... . ........++++++++.+........... ...
T Consensus 60 ~~l~~Q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~-~~~- 136 (184)
T PF04851_consen 60 ISLLEQWYDEFDDFGSE-KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKID-ESA- 136 (184)
T ss_dssp HHHHHHHHHHHHHHSTT-SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHhhhh-hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccc-cch-
Confidence 47889999999777652 122211110 0000 0 01123567899999999987643211000 000
Q ss_pred ccCcccchhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceeeEEEee
Q 003502 263 YCGKSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILD 342 (815)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIvD 342 (815)
. ..-.+....+++||+|
T Consensus 137 ---------------------------------~------------------------------~~~~~~~~~~~~vI~D 153 (184)
T PF04851_consen 137 ---------------------------------R------------------------------RSYKLLKNKFDLVIID 153 (184)
T ss_dssp ----------------------------------------------------------------GCHHGGGGSESEEEEE
T ss_pred ---------------------------------h------------------------------hhhhhccccCCEEEEe
Confidence 0 0000334468899999
Q ss_pred cceeccCCCchHHHHHHhhhcCcEEEeeCCCC
Q 003502 343 EAHFIKDRRSNTAKAVLALESSYKWALSGTPL 374 (815)
Q Consensus 343 EaH~~kn~~s~~~~~~~~l~~~~r~~LTgTPi 374 (815)
|||++.+... ++.+......++++|||||.
T Consensus 154 EaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 154 EAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp TGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred hhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 9999966432 55555578888999999995
No 97
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.64 E-value=1.5e-14 Score=168.60 Aligned_cols=108 Identities=19% Similarity=0.183 Sum_probs=90.8
Q ss_pred CceEEEEccChhHHHHHHHHHHh---CCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEE
Q 003502 662 SAKGIVFSQFTSFLDLINYSLHK---SGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFL 738 (815)
Q Consensus 662 ~~KvIIFs~~~~~~~~l~~~L~~---~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~ 738 (815)
...+|||+.....++.+.+.|.. .++.+..+||+++..+|.+++..|.++ ..+|+| +|++++.||++.++++||.
T Consensus 212 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G-~rkVlv-ATnIAErsLtIp~V~~VID 289 (812)
T PRK11664 212 SGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAG-RRKVVL-ATNIAETSLTIEGIRLVVD 289 (812)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCC-CeEEEE-ecchHHhcccccCceEEEE
Confidence 35899999999999999999986 578899999999999999999999875 556555 8999999999999999999
Q ss_pred eCCC----CCc--------------chHHHHhHhhhcCCCCCcEEEEEEEeCCc
Q 003502 739 MDPW----WNP--------------AVEQQAQDRIHRIGQYKPIRIVRFLIENT 774 (815)
Q Consensus 739 ~d~~----wnp--------------~~~~QaigR~~R~GQ~~~V~vy~l~~~~T 774 (815)
++.+ |+| ..+.||.||++|. .+=.+|+|+++..
T Consensus 290 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~ 340 (812)
T PRK11664 290 SGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQ 340 (812)
T ss_pred CCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHH
Confidence 7654 333 3588999999886 3678899988654
No 98
>COG4889 Predicted helicase [General function prediction only]
Probab=99.64 E-value=4.1e-15 Score=161.64 Aligned_cols=76 Identities=21% Similarity=0.288 Sum_probs=59.6
Q ss_pred CcEEEEecCCCHHHHHHHHHhhcC-CC-CceEEEEecCCCcccccccccCEEEEeCCCCCcchHHHHhHhhhcCCCCCc
Q 003502 687 VNCVQLVGSMSIPARDAAINRFTE-DP-DCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKP 763 (815)
Q Consensus 687 ~~~~~i~G~~~~~~R~~~i~~F~~-~~-~~~vlL~st~~g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~ 763 (815)
+.+..++|+|+..+|......-+. .+ .++| |-+.++.+||++++.-+.||||+|--+.....|++||+-|..-.|.
T Consensus 500 iSi~HvDGtmNal~R~~l~~l~~~~~~neckI-lSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~ 577 (1518)
T COG4889 500 ISIDHVDGTMNALERLDLLELKNTFEPNECKI-LSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKK 577 (1518)
T ss_pred EEeecccccccHHHHHHHHhccCCCCcchhee-eccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCc
Confidence 345568999999999655443322 22 5555 5578999999999999999999999999999999999999654443
No 99
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.63 E-value=1.7e-14 Score=150.88 Aligned_cols=107 Identities=14% Similarity=0.156 Sum_probs=92.2
Q ss_pred ceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEe---
Q 003502 663 AKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLM--- 739 (815)
Q Consensus 663 ~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~~--- 739 (815)
.++|||+.++.-.+.|+.+|...|++..-+|++++..+|..+-..|.+. .+.+++ +|.+.+.|+|++. +.|||=
T Consensus 441 GQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q-~l~~VV-TTAAL~AGVDFPA-SQVIFEsLa 517 (830)
T COG1202 441 GQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQ-ELAAVV-TTAALAAGVDFPA-SQVIFESLA 517 (830)
T ss_pred CceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcC-CcceEe-ehhhhhcCCCCch-HHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999987 777766 8899999999994 555542
Q ss_pred --CCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeC
Q 003502 740 --DPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIE 772 (815)
Q Consensus 740 --d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~ 772 (815)
--|.+|..+.|..|||+|.|-...=.||-|+-.
T Consensus 518 MG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvep 552 (830)
T COG1202 518 MGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEP 552 (830)
T ss_pred cccccCCHHHHHHHhcccCCCCcccCceEEEEecC
Confidence 236689999999999999997666677777744
No 100
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.62 E-value=9.8e-14 Score=159.40 Aligned_cols=106 Identities=9% Similarity=0.061 Sum_probs=86.1
Q ss_pred ceEEEEccChhHHHHHHHHHHhC--CCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEeC
Q 003502 663 AKGIVFSQFTSFLDLINYSLHKS--GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMD 740 (815)
Q Consensus 663 ~KvIIFs~~~~~~~~l~~~L~~~--g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~~d 740 (815)
-+|..-.+....+..+...|+.. ..++...||.|+..+-++++..|.++ .++||| +|-....|||+++||++|+-+
T Consensus 804 GQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g-~~dVLv-~TTIIEtGIDIPnANTiIIe~ 881 (1139)
T COG1197 804 GQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNG-EYDVLV-CTTIIETGIDIPNANTIIIER 881 (1139)
T ss_pred CEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcC-CCCEEE-EeeeeecCcCCCCCceEEEec
Confidence 35555556667777777777764 45678899999999999999999998 888877 668889999999999999977
Q ss_pred CC-CCcchHHHHhHhhhcCCCCCcEEEEEEEeC
Q 003502 741 PW-WNPAVEQQAQDRIHRIGQYKPIRIVRFLIE 772 (815)
Q Consensus 741 ~~-wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~ 772 (815)
.+ +--++.-|-.||++|-. +.-+-|.|+..
T Consensus 882 AD~fGLsQLyQLRGRVGRS~--~~AYAYfl~p~ 912 (1139)
T COG1197 882 ADKFGLAQLYQLRGRVGRSN--KQAYAYFLYPP 912 (1139)
T ss_pred cccccHHHHHHhccccCCcc--ceEEEEEeecC
Confidence 64 67799999999999944 45788877764
No 101
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.60 E-value=9.4e-16 Score=125.91 Aligned_cols=78 Identities=29% Similarity=0.511 Sum_probs=72.2
Q ss_pred HHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEeCCCCCcchHHHHhHhhhcCC
Q 003502 680 YSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIG 759 (815)
Q Consensus 680 ~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~G 759 (815)
.+|+..|+++..++|+++..+|+.+++.|+++ ...||+ +|.++++|+|++.+++||+++++||+..+.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~-~~~vli-~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSG-EIRVLI-ATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTT-SSSEEE-ESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhcc-CceEEE-eeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 36888999999999999999999999999997 455555 7799999999999999999999999999999999999988
No 102
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.60 E-value=2.2e-13 Score=154.05 Aligned_cols=117 Identities=14% Similarity=0.107 Sum_probs=98.8
Q ss_pred chHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 003502 643 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 722 (815)
Q Consensus 643 s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~ 722 (815)
..|..++++.+...- ..+..|||||.+....+.|...|...|+++..++|.....++.-+..+|+.+ . ++++|+
T Consensus 423 ~~K~~al~~~i~~~~--~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g-~---VtIATn 496 (796)
T PRK12906 423 DSKFNAVVKEIKERH--AKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRG-A---VTIATN 496 (796)
T ss_pred HHHHHHHHHHHHHHH--hCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCc-e---EEEEec
Confidence 568889999998763 3568999999999999999999999999999999998755555555555554 2 566889
Q ss_pred CCccccccc---ccC-----EEEEeCCCCCcchHHHHhHhhhcCCCCCcEE
Q 003502 723 AGGVALNLT---VAS-----HVFLMDPWWNPAVEQQAQDRIHRIGQYKPIR 765 (815)
Q Consensus 723 ~g~~GlNL~---~a~-----~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~ 765 (815)
.+|.|+|+. .+. |||.++.|-|...+.|++||++|.|..-...
T Consensus 497 mAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~ 547 (796)
T PRK12906 497 MAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSR 547 (796)
T ss_pred cccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceE
Confidence 999999995 667 9999999999999999999999999876543
No 103
>PRK14701 reverse gyrase; Provisional
Probab=99.60 E-value=7.9e-14 Score=171.44 Aligned_cols=104 Identities=13% Similarity=0.135 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhcCCCceEEEEccChhH---HHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEec--
Q 003502 647 EALREEIRFMVERDGSAKGIVFSQFTSF---LDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSL-- 721 (815)
Q Consensus 647 ~~l~~~l~~~~~~~~~~KvIIFs~~~~~---~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st-- 721 (815)
..|.++|+.. +..+|||++.... ++.|...|...|+++..+||+ |...+++|.++ +++||+++.
T Consensus 320 ~~L~~ll~~~-----g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G-~~~VLVaT~s~ 388 (1638)
T PRK14701 320 EHVRELLKKL-----GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEG-EIDYLIGVATY 388 (1638)
T ss_pred HHHHHHHHhC-----CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcC-CCCEEEEecCC
Confidence 3455555432 3578999988764 589999999999999999994 88999999998 889988663
Q ss_pred -CCCcccccccc-cCEEEEeCCCC---CcchHHHHh-------------HhhhcCCCC
Q 003502 722 -KAGGVALNLTV-ASHVFLMDPWW---NPAVEQQAQ-------------DRIHRIGQY 761 (815)
Q Consensus 722 -~~g~~GlNL~~-a~~vI~~d~~w---np~~~~Qai-------------gR~~R~GQ~ 761 (815)
.+++.|||++. ..+||||+.|- +...+.|.. ||+.|-|..
T Consensus 389 ~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 389 YGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred CCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 58899999997 99999999997 665555554 999998864
No 104
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.59 E-value=1.1e-12 Score=149.20 Aligned_cols=129 Identities=12% Similarity=0.140 Sum_probs=109.2
Q ss_pred chHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 003502 643 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 722 (815)
Q Consensus 643 s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~ 722 (815)
..|..++++.+..+-. .+..|||||.+....+.|...|...|+++..++|.....+|+.+..+|+.+ . ++++|+
T Consensus 427 ~~k~~av~~~i~~~~~--~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G-~---VtIATN 500 (896)
T PRK13104 427 ADKFQAIIEDVRECGV--RKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG-A---VTIATN 500 (896)
T ss_pred HHHHHHHHHHHHHHHh--CCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC-c---EEEecc
Confidence 5689999999988744 568999999999999999999999999999999999999999999999987 2 566999
Q ss_pred CCccccccc--------------------------------------ccCEEEEeCCCCCcchHHHHhHhhhcCCCCCcE
Q 003502 723 AGGVALNLT--------------------------------------VASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPI 764 (815)
Q Consensus 723 ~g~~GlNL~--------------------------------------~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V 764 (815)
.+|.|+|+. +.=|||--+.+-|--.+.|..||++|.|..-..
T Consensus 501 mAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss 580 (896)
T PRK13104 501 MAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSS 580 (896)
T ss_pred CccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCce
Confidence 999999976 234688889999999999999999999987655
Q ss_pred EEEEEEeCCcHHHHHHHH
Q 003502 765 RIVRFLIENTIEERILKL 782 (815)
Q Consensus 765 ~vy~l~~~~TiEe~i~~~ 782 (815)
..| + |+|+.++.+
T Consensus 581 ~f~-l----SleD~l~~~ 593 (896)
T PRK13104 581 RFY-L----SLEDNLMRI 593 (896)
T ss_pred EEE-E----EcCcHHHHH
Confidence 444 2 455555543
No 105
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.58 E-value=9.6e-14 Score=156.35 Aligned_cols=123 Identities=22% Similarity=0.210 Sum_probs=108.9
Q ss_pred chHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 003502 643 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 722 (815)
Q Consensus 643 s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~ 722 (815)
+.|+..|.++|....+ ..++|||++.-.-++.|.+-|.+.|+++..+||..++.+|...+..|+++ .+. ||+.|+
T Consensus 597 ~eKf~kL~eLl~e~~e---~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~-~~~-LLvaTs 671 (997)
T KOG0334|consen 597 NEKFLKLLELLGERYE---DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNG-VVN-LLVATS 671 (997)
T ss_pred hHHHHHHHHHHHHHhh---cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhcc-Cce-EEEehh
Confidence 6788899999988766 45999999999999999999999999999999999999999999999986 444 555889
Q ss_pred CCcccccccccCEEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeC
Q 003502 723 AGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIE 772 (815)
Q Consensus 723 ~g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~ 772 (815)
+.+.||+...-..||+||.|--...|.+|.||..|.|.+- .-|.|+..
T Consensus 672 vvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 672 VVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred hhhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 9999999999999999999988889999999999999776 55556655
No 106
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.58 E-value=1e-12 Score=149.41 Aligned_cols=119 Identities=18% Similarity=0.172 Sum_probs=101.6
Q ss_pred chHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 003502 643 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 722 (815)
Q Consensus 643 s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~ 722 (815)
..|..++++.+..+.. .+..|||||.+....+.|...|...|+++..++|. ..+|++.+.+|..+ ...| +++|+
T Consensus 413 ~~K~~aI~~~I~~~~~--~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~-~g~V-tIATN 486 (830)
T PRK12904 413 KEKFDAVVEDIKERHK--KGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGR-PGAV-TIATN 486 (830)
T ss_pred HHHHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCC-CceE-EEecc
Confidence 5689999999987643 46899999999999999999999999999999996 67999999999876 4455 44889
Q ss_pred CCcccccccc--------------------------------------cCEEEEeCCCCCcchHHHHhHhhhcCCCCCcE
Q 003502 723 AGGVALNLTV--------------------------------------ASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPI 764 (815)
Q Consensus 723 ~g~~GlNL~~--------------------------------------a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V 764 (815)
.+|.|+|+.= .=|||.-+.+-|--.+.|..||++|.|..-..
T Consensus 487 mAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss 566 (830)
T PRK12904 487 MAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSS 566 (830)
T ss_pred cccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCce
Confidence 9999999763 34788888999999999999999999987665
Q ss_pred EEE
Q 003502 765 RIV 767 (815)
Q Consensus 765 ~vy 767 (815)
..|
T Consensus 567 ~f~ 569 (830)
T PRK12904 567 RFY 569 (830)
T ss_pred eEE
Confidence 554
No 107
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.57 E-value=2.4e-13 Score=138.01 Aligned_cols=106 Identities=14% Similarity=0.140 Sum_probs=92.4
Q ss_pred ceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecC--------------------
Q 003502 663 AKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK-------------------- 722 (815)
Q Consensus 663 ~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~-------------------- 722 (815)
.|.|||.+..+..-.|.-+|+..||+.+.++|.++..-|..+|++||.| -+.++|++ +
T Consensus 269 gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG-~YdivIAt-D~s~~~~~~eee~kgk~~e~~ 346 (569)
T KOG0346|consen 269 GKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKG-LYDIVIAT-DDSADGDKLEEEVKGKSDEKN 346 (569)
T ss_pred CceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCc-ceeEEEEc-cCccchhhhhccccccccccC
Confidence 3899999999999999999999999999999999999999999999997 67776655 4
Q ss_pred ------C---------CcccccccccCEEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeC
Q 003502 723 ------A---------GGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIE 772 (815)
Q Consensus 723 ------~---------g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~ 772 (815)
. .+.|||++..+.||+||.|-++..|++|+||..|-|.+-.+ ..|+..
T Consensus 347 ~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~Gta--lSfv~P 409 (569)
T KOG0346|consen 347 PKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTA--LSFVSP 409 (569)
T ss_pred CCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCce--EEEecc
Confidence 1 24799999999999999999999999999999998876543 445544
No 108
>PRK09694 helicase Cas3; Provisional
Probab=99.57 E-value=4e-13 Score=156.15 Aligned_cols=98 Identities=13% Similarity=0.092 Sum_probs=79.6
Q ss_pred CCceEEEEccChhHHHHHHHHHHhCC---CcEEEEecCCCHHHH----HHHHHhhcCCCCc--eEEEEecCCCccccccc
Q 003502 661 GSAKGIVFSQFTSFLDLINYSLHKSG---VNCVQLVGSMSIPAR----DAAINRFTEDPDC--KIFLMSLKAGGVALNLT 731 (815)
Q Consensus 661 ~~~KvIIFs~~~~~~~~l~~~L~~~g---~~~~~i~G~~~~~~R----~~~i~~F~~~~~~--~vlL~st~~g~~GlNL~ 731 (815)
.+.++|||++....+..+.+.|...+ .++..+||.++..+| .++++.|..++.. ..+|++|++...|||+
T Consensus 559 ~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI- 637 (878)
T PRK09694 559 AGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL- 637 (878)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-
Confidence 35799999999999999999998764 678999999999988 4678899432232 2456799999999999
Q ss_pred ccCEEEEeCCCCCcchHHHHhHhhhcCCCC
Q 003502 732 VASHVFLMDPWWNPAVEQQAQDRIHRIGQY 761 (815)
Q Consensus 732 ~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~ 761 (815)
.++.+|....| ...+.||+||++|.|.+
T Consensus 638 d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 638 DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 57888876554 57899999999999874
No 109
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.52 E-value=1.1e-13 Score=128.69 Aligned_cols=137 Identities=22% Similarity=0.207 Sum_probs=98.3
Q ss_pred CCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHH-HHHHHHHHHHhcCCCCcEEEEE
Q 003502 143 GGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA-VTQWVSEINRFTSVGSTKVLIY 221 (815)
Q Consensus 143 g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~l-l~qW~~Ei~~~~~~~~~~v~~~ 221 (815)
++++..++|+|||.+++.++....... ..++++|+||... ..||...+..+... ...+.++
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~-----------------~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~ 63 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSL-----------------KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYL 63 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcc-----------------cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEE
Confidence 678999999999999999888876542 1269999999665 57778888887753 4566666
Q ss_pred eCCCCcCCc--ccccCCCEEEechhhhHHHhhhccCCCcccccccCcccchhhhhhhhhhccCCcchhhhhhhHHHHhhh
Q 003502 222 HGSNRERSA--KQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKM 299 (815)
Q Consensus 222 ~g~~~~~~~--~~~~~~~vvi~ty~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (815)
.+....... ......+++++||+.+...+...
T Consensus 64 ~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~---------------------------------------------- 97 (144)
T cd00046 64 IGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERL---------------------------------------------- 97 (144)
T ss_pred ecCcchhHHHHHhcCCCCEEEECcHHHHHHHHcC----------------------------------------------
Confidence 665443321 12467889999999887654321
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceeeEEEeecceeccCCCchHH---HHHHhhhcCcEEEeeCCC
Q 003502 300 KSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNTA---KAVLALESSYKWALSGTP 373 (815)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~~~---~~~~~l~~~~r~~LTgTP 373 (815)
.+....|++||+||+|.+.+...... ...........++|||||
T Consensus 98 ------------------------------~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 98 ------------------------------KLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred ------------------------------CcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 02234688999999999998765543 233345677889999998
No 110
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.52 E-value=1.1e-13 Score=136.92 Aligned_cols=160 Identities=28% Similarity=0.337 Sum_probs=109.9
Q ss_pred ccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcC-hH
Q 003502 120 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VA 198 (815)
Q Consensus 120 ~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P-~~ 198 (815)
..++|||.+++..+.... +++++..++|+|||.+++.++........ .+++||++| ..
T Consensus 7 ~~~~~~Q~~~~~~~~~~~----~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-----------------~~~~l~~~p~~~ 65 (201)
T smart00487 7 EPLRPYQKEAIEALLSGL----RDVILAAPTGSGKTLAALLPALEALKRGK-----------------GKRVLVLVPTRE 65 (201)
T ss_pred CCCCHHHHHHHHHHHcCC----CcEEEECCCCCchhHHHHHHHHHHhcccC-----------------CCcEEEEeCCHH
Confidence 558999999998876432 47899999999999988777666554321 258999999 67
Q ss_pred HHHHHHHHHHHhcCCCC-cEEEEEeCCCCcCCcccc-cC-CCEEEechhhhHHHhhhccCCCcccccccCcccchhhhhh
Q 003502 199 AVTQWVSEINRFTSVGS-TKVLIYHGSNRERSAKQF-SE-FDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVV 275 (815)
Q Consensus 199 ll~qW~~Ei~~~~~~~~-~~v~~~~g~~~~~~~~~~-~~-~~vvi~ty~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (815)
+..||..++..+++... ....++.+.........+ .. ++++++|++.+........
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~--------------------- 124 (201)
T smart00487 66 LAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL--------------------- 124 (201)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC---------------------
Confidence 78999999999886433 344455554322111112 22 3899999999887643210
Q ss_pred hhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceeeEEEeecceeccC-CCchH
Q 003502 276 HLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKD-RRSNT 354 (815)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~kn-~~s~~ 354 (815)
+...+++++|+||+|.+.+ .....
T Consensus 125 -------------------------------------------------------~~~~~~~~iIiDE~h~~~~~~~~~~ 149 (201)
T smart00487 125 -------------------------------------------------------LELSNVDLVILDEAHRLLDGGFGDQ 149 (201)
T ss_pred -------------------------------------------------------cCHhHCCEEEEECHHHHhcCCcHHH
Confidence 2334688999999999986 33333
Q ss_pred HHHH-Hhh-hcCcEEEeeCCCCCC
Q 003502 355 AKAV-LAL-ESSYKWALSGTPLQN 376 (815)
Q Consensus 355 ~~~~-~~l-~~~~r~~LTgTPi~n 376 (815)
...+ ..+ ...++++|||||..+
T Consensus 150 ~~~~~~~~~~~~~~v~~saT~~~~ 173 (201)
T smart00487 150 LEKLLKLLPKNVQLLLLSATPPEE 173 (201)
T ss_pred HHHHHHhCCccceEEEEecCCchh
Confidence 3333 333 467889999999744
No 111
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=4.1e-13 Score=135.00 Aligned_cols=120 Identities=17% Similarity=0.243 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 003502 645 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 724 (815)
Q Consensus 645 Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g 724 (815)
|+..|.++.+.. ...+||++...-++.|...|...|++...++|.+...+|..+...|+.+ ..+||+ +|...
T Consensus 252 k~~~l~dl~~~~------~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~g-ssrvlI-ttdl~ 323 (397)
T KOG0327|consen 252 KLDTLCDLYRRV------TQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSG-SSRVLI-TTDLL 323 (397)
T ss_pred cccHHHHHHHhh------hcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcC-CceEEe-ecccc
Confidence 566666666522 4679999999999999999999999999999999999999999999997 777766 88999
Q ss_pred cccccccccCEEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeCCc
Q 003502 725 GVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENT 774 (815)
Q Consensus 725 ~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~T 774 (815)
+.|+|++.++.||+||+|-|...|..|+||++|.|.+ -.+.+++++.+
T Consensus 324 argidv~~~slvinydlP~~~~~yihR~gr~gr~grk--g~~in~v~~~d 371 (397)
T KOG0327|consen 324 ARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRK--GVAINFVTEED 371 (397)
T ss_pred ccccchhhcceeeeeccccchhhhhhhcccccccCCC--ceeeeeehHhh
Confidence 9999999999999999999999999999999999964 44556666654
No 112
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.51 E-value=2.1e-11 Score=120.46 Aligned_cols=116 Identities=9% Similarity=0.102 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHh-CCC-cEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCc
Q 003502 648 ALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK-SGV-NCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGG 725 (815)
Q Consensus 648 ~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~-~g~-~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~ 725 (815)
+|...|+.... .+..++||.....++..+...|+. .+. ....++... ..|.+.|.+|++| ...+++ +|....
T Consensus 293 kl~~~lekq~~--~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G-~~~lLi-TTTILE 366 (441)
T COG4098 293 KLKRWLEKQRK--TGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDG-KITLLI-TTTILE 366 (441)
T ss_pred HHHHHHHHHHh--cCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcC-ceEEEE-Eeehhh
Confidence 34555655533 458899999999999999999954 332 334556554 5789999999987 666554 889999
Q ss_pred ccccccccCEEEEeCCC--CCcchHHHHhHhhhcCCCCCc--EEEEEE
Q 003502 726 VALNLTVASHVFLMDPW--WNPAVEQQAQDRIHRIGQYKP--IRIVRF 769 (815)
Q Consensus 726 ~GlNL~~a~~vI~~d~~--wnp~~~~QaigR~~R~GQ~~~--V~vy~l 769 (815)
.|+.++..+..++-.-. ++.+...|.-||++|--.... |..+++
T Consensus 367 RGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~ 414 (441)
T COG4098 367 RGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHY 414 (441)
T ss_pred cccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEec
Confidence 99999999998886544 899999999999999654333 444443
No 113
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.50 E-value=1.3e-12 Score=154.98 Aligned_cols=108 Identities=15% Similarity=0.165 Sum_probs=86.7
Q ss_pred CCceEEEEccChhHHHHHHHHHHhCCCc---EEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEE
Q 003502 661 GSAKGIVFSQFTSFLDLINYSLHKSGVN---CVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVF 737 (815)
Q Consensus 661 ~~~KvIIFs~~~~~~~~l~~~L~~~g~~---~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI 737 (815)
+..++|||+.....++.+.+.|...+++ +..++|+++..+|..+++.+ +..+| |++|++++.||++++.++||
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~---g~rkI-IVATNIAEtSITIpgI~yVI 360 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH---SGRRI-VLATNVAETSLTVPGIKYVI 360 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc---CCeeE-EEeccHHhhccccCcceEEE
Confidence 3458999999999999999999988765 56789999999998887653 24555 55999999999999999999
Q ss_pred EeC---------------CCCCc---chHHHHhHhhhcCCCCCcEEEEEEEeCCcH
Q 003502 738 LMD---------------PWWNP---AVEQQAQDRIHRIGQYKPIRIVRFLIENTI 775 (815)
Q Consensus 738 ~~d---------------~~wnp---~~~~QaigR~~R~GQ~~~V~vy~l~~~~Ti 775 (815)
.++ ++-.| ..+.||.||++|.+ +=.+|+|+++...
T Consensus 361 D~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~---~G~c~rLyte~d~ 413 (1294)
T PRK11131 361 DPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS---EGICIRLYSEDDF 413 (1294)
T ss_pred ECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC---CcEEEEeCCHHHH
Confidence 974 33333 67899999999973 5578889886543
No 114
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.49 E-value=1.2e-11 Score=140.31 Aligned_cols=129 Identities=12% Similarity=0.151 Sum_probs=108.8
Q ss_pred chHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 003502 643 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 722 (815)
Q Consensus 643 s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~ 722 (815)
..|..++++.+..+-+ .|..|||||.+....+.|...|...|+++..+++..+..++..+...|+.+. ++++|+
T Consensus 432 ~~K~~Aii~ei~~~~~--~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~----VtIATn 505 (908)
T PRK13107 432 DEKYQAIIKDIKDCRE--RGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA----VTIATN 505 (908)
T ss_pred HHHHHHHHHHHHHHHH--cCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc----EEEecC
Confidence 6799999999988854 4689999999999999999999999999999999999999999999999873 566899
Q ss_pred CCccccccc-------------------------------------ccCEEEEeCCCCCcchHHHHhHhhhcCCCCCcEE
Q 003502 723 AGGVALNLT-------------------------------------VASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIR 765 (815)
Q Consensus 723 ~g~~GlNL~-------------------------------------~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~ 765 (815)
.+|.|+|+. +.=|||--+.+-|--.+.|..||++|.|..-.-.
T Consensus 506 mAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~ 585 (908)
T PRK13107 506 MAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSR 585 (908)
T ss_pred CcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCcee
Confidence 999999976 2347899999999999999999999999865544
Q ss_pred EEEEEeCCcHHHHHHHH
Q 003502 766 IVRFLIENTIEERILKL 782 (815)
Q Consensus 766 vy~l~~~~TiEe~i~~~ 782 (815)
.| + |+|+.++.+
T Consensus 586 f~-l----SlED~L~r~ 597 (908)
T PRK13107 586 FY-L----SMEDSLMRI 597 (908)
T ss_pred EE-E----EeCcHHHHH
Confidence 33 2 345555443
No 115
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.49 E-value=2.2e-12 Score=153.77 Aligned_cols=120 Identities=14% Similarity=0.179 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCC---CcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 003502 648 ALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSG---VNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 724 (815)
Q Consensus 648 ~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g---~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g 724 (815)
.+.+.|..+... ....+|||......++.+...|...+ +.+..++|+++..+|.+++..+ +..+| |++|+++
T Consensus 266 ~i~~~I~~l~~~-~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~~rkI-VLATNIA 340 (1283)
T TIGR01967 266 AILDAVDELFAE-GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---SGRRI-VLATNVA 340 (1283)
T ss_pred HHHHHHHHHHhh-CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---CCceE-EEeccHH
Confidence 333444443333 23589999999999999999998765 4577899999999998885543 23454 5589999
Q ss_pred cccccccccCEEEEeCCC----C--------------CcchHHHHhHhhhcCCCCCcEEEEEEEeCCcH
Q 003502 725 GVALNLTVASHVFLMDPW----W--------------NPAVEQQAQDRIHRIGQYKPIRIVRFLIENTI 775 (815)
Q Consensus 725 ~~GlNL~~a~~vI~~d~~----w--------------np~~~~QaigR~~R~GQ~~~V~vy~l~~~~Ti 775 (815)
+.||++++..+||.++.. + +.+.+.||.||++|.| +=.+|+|+++...
T Consensus 341 EtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~ 406 (1283)
T TIGR01967 341 ETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDF 406 (1283)
T ss_pred HhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHH
Confidence 999999999999987732 1 3368899999999987 5578899987644
No 116
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.47 E-value=1.2e-13 Score=114.78 Aligned_cols=81 Identities=23% Similarity=0.365 Sum_probs=74.2
Q ss_pred HHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEeCCCCCcchHHHHhHhhh
Q 003502 677 LINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIH 756 (815)
Q Consensus 677 ~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~ 756 (815)
.|...|...++++..++|+++..+|..+++.|+++ .. .+|++|.++++|+|++.+++||+++++||+..+.|++||++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~-~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~ 79 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNG-KI-KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAG 79 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcC-CC-eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccc
Confidence 46777888899999999999999999999999986 44 55668999999999999999999999999999999999999
Q ss_pred cCC
Q 003502 757 RIG 759 (815)
Q Consensus 757 R~G 759 (815)
|.|
T Consensus 80 R~g 82 (82)
T smart00490 80 RAG 82 (82)
T ss_pred cCC
Confidence 987
No 117
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.47 E-value=6.3e-11 Score=135.21 Aligned_cols=133 Identities=16% Similarity=0.163 Sum_probs=109.3
Q ss_pred chHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 003502 643 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 722 (815)
Q Consensus 643 s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~ 722 (815)
..++..|++.|..... .+.++|||+.....++.|...|...|+++..+||.++..+|.+++..|+++ .+.|++ +|.
T Consensus 425 ~~qi~~Ll~eI~~~~~--~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G-~i~VLV-~t~ 500 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVA--RNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLG-EFDVLV-GIN 500 (655)
T ss_pred cchHHHHHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcC-CceEEE-EcC
Confidence 4567788888887654 458999999999999999999999999999999999999999999999987 777765 779
Q ss_pred CCcccccccccCEEEEeC-----CCCCcchHHHHhHhhhcCCCCCcEEEEEEEeCCc--HHHHHHHH
Q 003502 723 AGGVALNLTVASHVFLMD-----PWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENT--IEERILKL 782 (815)
Q Consensus 723 ~g~~GlNL~~a~~vI~~d-----~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~T--iEe~i~~~ 782 (815)
..++|++++.++.||++| .+-+...+.|++||+.|.. .- .++.|+...| +...|.+.
T Consensus 501 ~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~-~G--~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 501 LLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NG--KVIMYADKITDSMQKAIEET 564 (655)
T ss_pred hhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC-CC--EEEEEEcCCCHHHHHHHHHH
Confidence 999999999999999999 5668889999999999973 22 3444554433 44444443
No 118
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.46 E-value=1.2e-10 Score=121.79 Aligned_cols=137 Identities=15% Similarity=0.164 Sum_probs=113.5
Q ss_pred hHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCC
Q 003502 644 TKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKA 723 (815)
Q Consensus 644 ~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~ 723 (815)
.-++-|+..|+...+. ++++||=+-...|++-|.++|...|+++..+|.....-+|.+++...+.| .+.|++ ....
T Consensus 430 ~QvdDL~~EI~~r~~~--~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G-~~DvLV-GINL 505 (663)
T COG0556 430 GQVDDLLSEIRKRVAK--NERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLG-EFDVLV-GINL 505 (663)
T ss_pred CcHHHHHHHHHHHHhc--CCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcC-CccEEE-eehh
Confidence 4466677777776554 48999999999999999999999999999999999999999999999997 788877 6799
Q ss_pred CcccccccccCEEEEeCCC-----CCcchHHHHhHhhhcCCCCCcEEEEEEEeCCcHHHHHHHHHHH
Q 003502 724 GGVALNLTVASHVFLMDPW-----WNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEK 785 (815)
Q Consensus 724 g~~GlNL~~a~~vI~~d~~-----wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~TiEe~i~~~~~~ 785 (815)
.-+||||+.++.|-++|.+ -+-...+|-||||-|--. -.|..|-=.+.++++..|-+...+
T Consensus 506 LREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~-GkvIlYAD~iT~sM~~Ai~ET~RR 571 (663)
T COG0556 506 LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKVILYADKITDSMQKAIDETERR 571 (663)
T ss_pred hhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccC-CeEEEEchhhhHHHHHHHHHHHHH
Confidence 9999999999999999965 566889999999999432 236666555667777777665543
No 119
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.44 E-value=1.5e-11 Score=137.88 Aligned_cols=82 Identities=12% Similarity=0.037 Sum_probs=61.5
Q ss_pred EecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEeCCCCCcc----------hHHHHhHhhhcCCCC
Q 003502 692 LVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPA----------VEQQAQDRIHRIGQY 761 (815)
Q Consensus 692 i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~~d~~wnp~----------~~~QaigR~~R~GQ~ 761 (815)
-|.++.-++|+-.=+-|..| .++|+. +|...+-|+||++-..+|--.+.|+++ ...|..|||+|.+=.
T Consensus 402 HhAGm~r~DR~l~E~~F~~G-~i~vL~-cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd 479 (1230)
T KOG0952|consen 402 HHAGMLRSDRQLVEKEFKEG-HIKVLC-CTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFD 479 (1230)
T ss_pred cccccchhhHHHHHHHHhcC-CceEEE-ecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCC
Confidence 35667778888888889887 777765 789999999999888888777777774 378999999997654
Q ss_pred CcEEEEEEEeCCcH
Q 003502 762 KPIRIVRFLIENTI 775 (815)
Q Consensus 762 ~~V~vy~l~~~~Ti 775 (815)
..-..+-+.+.+.+
T Consensus 480 ~~G~giIiTt~dkl 493 (1230)
T KOG0952|consen 480 SSGEGIIITTRDKL 493 (1230)
T ss_pred CCceEEEEecccHH
Confidence 44444445555443
No 120
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.43 E-value=5.5e-11 Score=135.57 Aligned_cols=129 Identities=12% Similarity=0.154 Sum_probs=104.7
Q ss_pred chHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 003502 643 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 722 (815)
Q Consensus 643 s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~ 722 (815)
..|..+|++.|..... .+..|||||.+....+.|...|...|+++..+++ ...+|++.+.+|..+ ...| +++|+
T Consensus 581 ~eK~~Ali~~I~~~~~--~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~-~g~V-tIATN 654 (1025)
T PRK12900 581 REKYNAIVLKVEELQK--KGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQ-KGAV-TIATN 654 (1025)
T ss_pred HHHHHHHHHHHHHHhh--CCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCC-CCeE-EEecc
Confidence 5689999999987643 4689999999999999999999999999999997 568999999999875 4445 55889
Q ss_pred CCcccccccccC--------EEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeCCcHHHHHHHH
Q 003502 723 AGGVALNLTVAS--------HVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKL 782 (815)
Q Consensus 723 ~g~~GlNL~~a~--------~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~TiEe~i~~~ 782 (815)
.+|.|+|+.-.. +||..+.+-+...+.|++||++|.|..-....| + |.|+.++.+
T Consensus 655 MAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ff--v---SleD~Lmr~ 717 (1025)
T PRK12900 655 MAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFY--V---SLEDELMRL 717 (1025)
T ss_pred CcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEE--e---chhHHHHHh
Confidence 999999998332 458889999999999999999999986554322 2 345555543
No 121
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.41 E-value=1.4e-12 Score=131.80 Aligned_cols=124 Identities=17% Similarity=0.162 Sum_probs=106.3
Q ss_pred chHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 003502 643 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 722 (815)
Q Consensus 643 s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~ 722 (815)
..|..+|..++..... +++.+||+.....++++...|...|+....+.|++.+..|..-+.+|+.+ ...+ |+.|+
T Consensus 245 a~K~aaLl~il~~~~~---~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~-k~~~-lvvTd 319 (529)
T KOG0337|consen 245 AEKEAALLSILGGRIK---DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGR-KTSI-LVVTD 319 (529)
T ss_pred HHHHHHHHHHHhcccc---ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCC-ccce-EEEeh
Confidence 4577777777766543 45789999999999999999999999999999999999999899999875 4445 45779
Q ss_pred CCcccccccccCEEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeCC
Q 003502 723 AGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIEN 773 (815)
Q Consensus 723 ~g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~ 773 (815)
+++.|++++--+.||+||.|-.+..+.+|.||+.|.|.+ -..|-||+.+
T Consensus 320 vaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrt--g~aYs~V~~~ 368 (529)
T KOG0337|consen 320 VAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRT--GRAYSLVAST 368 (529)
T ss_pred hhhccCCCccccccccccCCCCCceEEEEecchhhcccc--ceEEEEEecc
Confidence 999999999999999999999999999999999999965 4566677654
No 122
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.41 E-value=1.7e-12 Score=150.48 Aligned_cols=108 Identities=13% Similarity=0.113 Sum_probs=98.9
Q ss_pred cCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEE
Q 003502 659 RDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFL 738 (815)
Q Consensus 659 ~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~ 738 (815)
..++.-.||||..+.+.+.+...|...|+....+|++++..+|+.+..+|..+ +++|++ +|=|.|-|||-.+...||+
T Consensus 482 ~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~-~~~Viv-ATVAFGMGIdK~DVR~ViH 559 (941)
T KOG0351|consen 482 RHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSD-KIRVIV-ATVAFGMGIDKPDVRFVIH 559 (941)
T ss_pred cCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcC-CCeEEE-EEeeccCCCCCCceeEEEE
Confidence 34567889999999999999999999999999999999999999999999998 788766 7799999999999999999
Q ss_pred eCCCCCcchHHHHhHhhhcCCCCCcEEEEE
Q 003502 739 MDPWWNPAVEQQAQDRIHRIGQYKPIRIVR 768 (815)
Q Consensus 739 ~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~ 768 (815)
|..|-+..-|-|-.|||+|-|+...++.|+
T Consensus 560 ~~lPks~E~YYQE~GRAGRDG~~s~C~l~y 589 (941)
T KOG0351|consen 560 YSLPKSFEGYYQEAGRAGRDGLPSSCVLLY 589 (941)
T ss_pred CCCchhHHHHHHhccccCcCCCcceeEEec
Confidence 999999999999999999999987755543
No 123
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.37 E-value=5.4e-12 Score=125.20 Aligned_cols=111 Identities=16% Similarity=0.102 Sum_probs=79.3
Q ss_pred cchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcC-hHH
Q 003502 121 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VAA 199 (815)
Q Consensus 121 ~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P-~~l 199 (815)
.|++||.+++..+.. .++.++..++|+|||+..+..+......... ....+++|||| ..+
T Consensus 21 ~~~~~Q~~~~~~~~~-----~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~--------------~~~~~viii~p~~~L 81 (203)
T cd00268 21 KPTPIQARAIPPLLS-----GRDVIGQAQTGSGKTAAFLIPILEKLDPSPK--------------KDGPQALILAPTREL 81 (203)
T ss_pred CCCHHHHHHHHHHhc-----CCcEEEECCCCCcHHHHHHHHHHHHHHhhcc--------------cCCceEEEEcCCHHH
Confidence 489999999988766 2689999999999999854444333322200 01247999999 567
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEeCCCCcC-Ccccc-cCCCEEEechhhhHHHh
Q 003502 200 VTQWVSEINRFTSVGSTKVLIYHGSNRER-SAKQF-SEFDFVITTYSIIEADY 250 (815)
Q Consensus 200 l~qW~~Ei~~~~~~~~~~v~~~~g~~~~~-~~~~~-~~~~vvi~ty~~l~~~~ 250 (815)
+.||...+..+.......+..++|..... ....+ ...+|+|+|.+.+...+
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l 134 (203)
T cd00268 82 ALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLL 134 (203)
T ss_pred HHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHH
Confidence 89999999998776677888888765432 11222 37899999999887654
No 124
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.36 E-value=9.6e-10 Score=126.74 Aligned_cols=123 Identities=15% Similarity=0.160 Sum_probs=104.4
Q ss_pred chHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 003502 643 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 722 (815)
Q Consensus 643 s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~ 722 (815)
..++..|++.|..+.. .+.++||||.....++.|...|...|+++..+||.++..+|..++..|+.+ .+.|++ +|.
T Consensus 429 ~~q~~~L~~~L~~~~~--~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g-~i~vlV-~t~ 504 (652)
T PRK05298 429 KGQVDDLLSEIRKRVA--KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLG-EFDVLV-GIN 504 (652)
T ss_pred cccHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcC-CceEEE-EeC
Confidence 3457788888887754 458999999999999999999999999999999999999999999999886 677655 779
Q ss_pred CCcccccccccCEEEEeCC-----CCCcchHHHHhHhhhcCCCCCcEEEEEEEeC
Q 003502 723 AGGVALNLTVASHVFLMDP-----WWNPAVEQQAQDRIHRIGQYKPIRIVRFLIE 772 (815)
Q Consensus 723 ~g~~GlNL~~a~~vI~~d~-----~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~ 772 (815)
..++|++++.++.||++|. +-++..+.|++||++|. . .=.++.|+..
T Consensus 505 ~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~--~G~~i~~~~~ 556 (652)
T PRK05298 505 LLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-V--NGKVILYADK 556 (652)
T ss_pred HHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-C--CCEEEEEecC
Confidence 9999999999999999995 46889999999999994 2 2235555553
No 125
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.33 E-value=3.6e-11 Score=121.76 Aligned_cols=102 Identities=16% Similarity=0.198 Sum_probs=92.8
Q ss_pred EEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEeCCCCC
Q 003502 665 GIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWN 744 (815)
Q Consensus 665 vIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~~d~~wn 744 (815)
-||||..++..+.++-.|...||+..-+|.+....+|.++.+.|.++ ++-||. +|...|.|+|=++...||+++++-|
T Consensus 258 GIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~-~~PvI~-AT~SFGMGVDKp~VRFViHW~~~qn 335 (641)
T KOG0352|consen 258 GIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNN-EIPVIA-ATVSFGMGVDKPDVRFVIHWSPSQN 335 (641)
T ss_pred eEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcC-CCCEEE-EEeccccccCCcceeEEEecCchhh
Confidence 39999999999999999999999999999999999999999999997 666655 7799999999999999999999999
Q ss_pred cchHHHHhHhhhcCCCCCcEEEEE
Q 003502 745 PAVEQQAQDRIHRIGQYKPIRIVR 768 (815)
Q Consensus 745 p~~~~QaigR~~R~GQ~~~V~vy~ 768 (815)
..-|-|--||++|-|-..=+..|+
T Consensus 336 ~AgYYQESGRAGRDGk~SyCRLYY 359 (641)
T KOG0352|consen 336 LAGYYQESGRAGRDGKRSYCRLYY 359 (641)
T ss_pred hHHHHHhccccccCCCccceeeee
Confidence 999999999999999765565553
No 126
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.32 E-value=1.1e-11 Score=119.11 Aligned_cols=106 Identities=20% Similarity=0.257 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcC-hHHHHH
Q 003502 124 RYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VAAVTQ 202 (815)
Q Consensus 124 ~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P-~~ll~q 202 (815)
|+|.+++.-+... +..++..++|+|||..++..+........ ...+||+|| ..++.|
T Consensus 2 ~~Q~~~~~~i~~~-----~~~li~aptGsGKT~~~~~~~l~~~~~~~-----------------~~~~lii~P~~~l~~q 59 (169)
T PF00270_consen 2 PLQQEAIEAIISG-----KNVLISAPTGSGKTLAYILPALNRLQEGK-----------------DARVLIIVPTRALAEQ 59 (169)
T ss_dssp HHHHHHHHHHHTT-----SEEEEECSTTSSHHHHHHHHHHHHHHTTS-----------------SSEEEEEESSHHHHHH
T ss_pred HHHHHHHHHHHcC-----CCEEEECCCCCccHHHHHHHHHhhhccCC-----------------CceEEEEeeccccccc
Confidence 7999999876632 56899999999999998765554433221 138999999 678899
Q ss_pred HHHHHHHhcCCCCcEEEEEeCCCCcC-C-cccc-cCCCEEEechhhhHHHhh
Q 003502 203 WVSEINRFTSVGSTKVLIYHGSNRER-S-AKQF-SEFDFVITTYSIIEADYR 251 (815)
Q Consensus 203 W~~Ei~~~~~~~~~~v~~~~g~~~~~-~-~~~~-~~~~vvi~ty~~l~~~~~ 251 (815)
-.+++.+++.....++..++|..... . ...+ ...+|+|+|++.+...+.
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~ 111 (169)
T PF00270_consen 60 QFERLRKFFSNTNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLIS 111 (169)
T ss_dssp HHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccCcchhhcccc
Confidence 99999999876567788887765422 1 1222 469999999999987653
No 127
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.31 E-value=1.8e-09 Score=123.20 Aligned_cols=128 Identities=13% Similarity=0.185 Sum_probs=98.1
Q ss_pred chHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHH-HHHHhhcCCCCceEEEEec
Q 003502 643 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARD-AAINRFTEDPDCKIFLMSL 721 (815)
Q Consensus 643 s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~-~~i~~F~~~~~~~vlL~st 721 (815)
..|..++++.+...-+ .+..|||-|.+....+.|...|...|+++..++.... +++ ++|.. .| ....+.++|
T Consensus 551 ~~k~~ai~~ei~~~~~--~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~--~~Ea~iia~--AG-~~g~VTIAT 623 (970)
T PRK12899 551 REKYHAIVAEIASIHR--KGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH--AQEAEIIAG--AG-KLGAVTVAT 623 (970)
T ss_pred HHHHHHHHHHHHHHHh--CCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh--hhHHHHHHh--cC-CCCcEEEee
Confidence 5789999999988844 4588999999999999999999999999999988643 443 34433 23 333456689
Q ss_pred CCCccccccc--------ccCEEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeCCcHHHHHHHH
Q 003502 722 KAGGVALNLT--------VASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKL 782 (815)
Q Consensus 722 ~~g~~GlNL~--------~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~TiEe~i~~~ 782 (815)
..+|.|.|+. +.=|||.-..+-|...+.|..||++|.|..-....| + |+|+.++.+
T Consensus 624 NmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~-l----SlEDdL~~~ 687 (970)
T PRK12899 624 NMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFF-L----SFEDRLMRL 687 (970)
T ss_pred ccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEE-E----EcchHHHHH
Confidence 9999998865 334789899999999999999999999987654443 2 355555543
No 128
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.31 E-value=8.7e-10 Score=122.42 Aligned_cols=130 Identities=16% Similarity=0.148 Sum_probs=99.9
Q ss_pred chHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 003502 643 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 722 (815)
Q Consensus 643 s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~ 722 (815)
..|..++++.+..+.+ .+..|||.+.+....+.|...|.+.|+++..++.... .+-.++|.+= | ....+.++|.
T Consensus 410 ~~k~~Aii~ei~~~~~--~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~A--G-~~gaVTIATN 483 (764)
T PRK12326 410 AEKNDAIVEHIAEVHE--TGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAEA--G-KYGAVTVSTQ 483 (764)
T ss_pred HHHHHHHHHHHHHHHH--cCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHhc--C-CCCcEEEEec
Confidence 5689999999988744 5689999999999999999999999999999998754 2223344432 3 3344566999
Q ss_pred CCccccccc---------------ccCEEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeCCcHHHHHHHHH
Q 003502 723 AGGVALNLT---------------VASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQ 783 (815)
Q Consensus 723 ~g~~GlNL~---------------~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~TiEe~i~~~~ 783 (815)
.+|.|-|+. +.=|||--..+-|--.+.|..||++|.|..-....| + |+|+.++.+-
T Consensus 484 MAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~-l----SleDdl~~~f 554 (764)
T PRK12326 484 MAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF-V----SLEDDVVAAN 554 (764)
T ss_pred CCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEE-E----EcchhHHHhc
Confidence 999998876 334788889999999999999999999987665444 2 4555555443
No 129
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.24 E-value=6.6e-10 Score=129.98 Aligned_cols=127 Identities=12% Similarity=0.076 Sum_probs=97.9
Q ss_pred CCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcC---CCCceEEEEecCCCcccccccccCEEE
Q 003502 661 GSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTE---DPDCKIFLMSLKAGGVALNLTVASHVF 737 (815)
Q Consensus 661 ~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~---~~~~~vlL~st~~g~~GlNL~~a~~vI 737 (815)
.+.|++|-++....+..++..|+..+.+++.+|+.++...|.+.+....+ ..+.. ++++|++...|+|+. .+.+
T Consensus 439 ~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~-IvVaTQVIEagvDid-fd~m- 515 (733)
T COG1203 439 EGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGF-IVVATQVIEAGVDID-FDVL- 515 (733)
T ss_pred cCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCe-EEEEeeEEEEEeccc-cCee-
Confidence 45799999999999999999999988789999999999999988885542 22444 455999999999998 4444
Q ss_pred EeCCCCCcchHHHHhHhhhcCC--CCCcEEEEEEEeCCcHHHHHHHHHHHHHHHhh
Q 003502 738 LMDPWWNPAVEQQAQDRIHRIG--QYKPIRIVRFLIENTIEERILKLQEKKKLVFE 791 (815)
Q Consensus 738 ~~d~~wnp~~~~QaigR~~R~G--Q~~~V~vy~l~~~~TiEe~i~~~~~~K~~~~~ 791 (815)
+-|+. -....+||.||++|.| ....+.||...-......+.++....+.....
T Consensus 516 ITe~a-PidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (733)
T COG1203 516 ITELA-PIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEKLEKKLKSLE 570 (733)
T ss_pred eecCC-CHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhcchhhhcccc
Confidence 33432 2477899999999999 45568888887777777777776665554433
No 130
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.22 E-value=9.5e-10 Score=109.67 Aligned_cols=89 Identities=11% Similarity=0.115 Sum_probs=80.5
Q ss_pred CCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEeC
Q 003502 661 GSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMD 740 (815)
Q Consensus 661 ~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~~d 740 (815)
.+..-||||-...-.+.+...|...||....+|..+.+.+|.-+-..|-.+ .++|++ +|-+.|.||+-++...||+-.
T Consensus 316 ~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~-eiqviv-atvafgmgidkpdvrfvihhs 393 (695)
T KOG0353|consen 316 AGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAG-EIQVIV-ATVAFGMGIDKPDVRFVIHHS 393 (695)
T ss_pred CCCcceEEEeccccHHHHHHHHHhcCccccccccccCcccccccccccccc-ceEEEE-EEeeecccCCCCCeeEEEecc
Confidence 345669999999999999999999999999999999999998888888887 889877 668999999999999999999
Q ss_pred CCCCcchHHHH
Q 003502 741 PWWNPAVEQQA 751 (815)
Q Consensus 741 ~~wnp~~~~Qa 751 (815)
.|-+...|-|+
T Consensus 394 l~ksienyyqa 404 (695)
T KOG0353|consen 394 LPKSIENYYQA 404 (695)
T ss_pred cchhHHHHHHH
Confidence 99999999993
No 131
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.22 E-value=8.4e-10 Score=125.70 Aligned_cols=96 Identities=21% Similarity=0.166 Sum_probs=67.5
Q ss_pred CCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcC-hHHHHHHHHHHHHhcCCCCcEEEE
Q 003502 142 RGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VAAVTQWVSEINRFTSVGSTKVLI 220 (815)
Q Consensus 142 ~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P-~~ll~qW~~Ei~~~~~~~~~~v~~ 220 (815)
.+.+|+.++|+|||-.|+.-|+.....+.... ..-+.....+.-|+| ++|+..|...|.+++.+-.+.|.-
T Consensus 326 EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~d--------gs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~E 397 (1674)
T KOG0951|consen 326 ENMLLCAPTGAGKTNVAVLTILQELGNHLRED--------GSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLE 397 (1674)
T ss_pred CcEEEeccCCCCchHHHHHHHHHHHhcccccc--------cceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEE
Confidence 36688889999999999777666554332200 001122246788899 889999999999999877777887
Q ss_pred EeCCCCcCCcccccCCCEEEechhhh
Q 003502 221 YHGSNRERSAKQFSEFDFVITTYSII 246 (815)
Q Consensus 221 ~~g~~~~~~~~~~~~~~vvi~ty~~l 246 (815)
.+|+..- ...++....|+++|.+..
T Consensus 398 lTgD~~l-~~~qieeTqVIV~TPEK~ 422 (1674)
T KOG0951|consen 398 LTGDSQL-GKEQIEETQVIVTTPEKW 422 (1674)
T ss_pred ecccccc-hhhhhhcceeEEeccchh
Confidence 7877542 234566778899998864
No 132
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.18 E-value=7.4e-10 Score=125.24 Aligned_cols=106 Identities=21% Similarity=0.155 Sum_probs=79.5
Q ss_pred ccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcC-hH
Q 003502 120 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VA 198 (815)
Q Consensus 120 ~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P-~~ 198 (815)
..|-+-|..++.-+.... ....-.+|.-.+|+|||-.-+.+|...+..+ +.+||+|| -+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~-~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G-------------------kqvLvLVPEI~ 256 (730)
T COG1198 197 LALNQEQQAAVEAILSSL-GGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG-------------------KQVLVLVPEIA 256 (730)
T ss_pred cccCHHHHHHHHHHHHhc-ccccceeEeCCCCCcHHHHHHHHHHHHHHcC-------------------CEEEEEecccc
Confidence 457889999998877765 3445779999999999998888888877654 58899999 67
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEeCCCCcCCc-----cc-ccCCCEEEechhhhHH
Q 003502 199 AVTQWVSEINRFTSVGSTKVLIYHGSNRERSA-----KQ-FSEFDFVITTYSIIEA 248 (815)
Q Consensus 199 ll~qW~~Ei~~~~~~~~~~v~~~~g~~~~~~~-----~~-~~~~~vvi~ty~~l~~ 248 (815)
+..|-.+.|+..++ .++.++|+.-..... +. .++..|||-|.+.+..
T Consensus 257 Ltpq~~~rf~~rFg---~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~ 309 (730)
T COG1198 257 LTPQLLARFKARFG---AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFL 309 (730)
T ss_pred chHHHHHHHHHHhC---CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhcC
Confidence 88998888888775 677777776443221 11 2567888888887643
No 133
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.13 E-value=1.8e-08 Score=114.97 Aligned_cols=120 Identities=15% Similarity=0.144 Sum_probs=94.8
Q ss_pred cchHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEec
Q 003502 642 SSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSL 721 (815)
Q Consensus 642 ~s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st 721 (815)
...|..++++.+..+-+ .|..|||-+.+....+.|...|...|+++..++.... ++++.|-+ +.| ....+.++|
T Consensus 431 ~~eK~~Ai~~ei~~~~~--~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~--~~EA~IIa-~AG-~~GaVTIAT 504 (913)
T PRK13103 431 AEEKYAAIITDIKECMA--LGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH--EKEAEIIA-QAG-RPGALTIAT 504 (913)
T ss_pred HHHHHHHHHHHHHHHHh--CCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc--hhHHHHHH-cCC-CCCcEEEec
Confidence 36799999999998844 5689999999999999999999999999988887643 34333333 234 333456689
Q ss_pred CCCccccccc-------------------------------------ccCEEEEeCCCCCcchHHHHhHhhhcCCCCCcE
Q 003502 722 KAGGVALNLT-------------------------------------VASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPI 764 (815)
Q Consensus 722 ~~g~~GlNL~-------------------------------------~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V 764 (815)
..+|.|-|+. +.=|||--+.+-|--.+.|..||++|.|..-..
T Consensus 505 NMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS 584 (913)
T PRK13103 505 NMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSS 584 (913)
T ss_pred cCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCce
Confidence 9999999975 344789899999999999999999999987654
Q ss_pred EEE
Q 003502 765 RIV 767 (815)
Q Consensus 765 ~vy 767 (815)
..|
T Consensus 585 ~f~ 587 (913)
T PRK13103 585 RFY 587 (913)
T ss_pred EEE
Confidence 443
No 134
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.12 E-value=3.2e-08 Score=111.83 Aligned_cols=129 Identities=13% Similarity=0.166 Sum_probs=100.9
Q ss_pred chHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 003502 643 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 722 (815)
Q Consensus 643 s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~ 722 (815)
..|..++++.+..+-+ .+..|||.|.+....+.|...|...|+++..++... .++++.|-. +.| ....+.++|.
T Consensus 409 ~~K~~Aii~ei~~~~~--~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~--~e~EA~IIa-~AG-~~GaVTIATN 482 (925)
T PRK12903 409 HAKWKAVVKEVKRVHK--KGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQ--NAREAEIIA-KAG-QKGAITIATN 482 (925)
T ss_pred HHHHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccc--hhhHHHHHH-hCC-CCCeEEEecc
Confidence 5789999999988744 568999999999999999999999999999998864 345544443 344 4444566899
Q ss_pred CCcccccccccC--------EEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeCCcHHHHHHHH
Q 003502 723 AGGVALNLTVAS--------HVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKL 782 (815)
Q Consensus 723 ~g~~GlNL~~a~--------~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~TiEe~i~~~ 782 (815)
.+|.|.|+.-.. |||..+.+-|-..+.|..||++|.|..-....| + |+|+.++.+
T Consensus 483 MAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~-l----SLeD~L~r~ 545 (925)
T PRK12903 483 MAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF-I----SLDDQLFRR 545 (925)
T ss_pred cccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE-E----ecchHHHHH
Confidence 999999977433 899999999999999999999999987665444 2 345555543
No 135
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.07 E-value=4.5e-08 Score=109.27 Aligned_cols=100 Identities=18% Similarity=0.147 Sum_probs=69.5
Q ss_pred ccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcC-hH
Q 003502 120 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VA 198 (815)
Q Consensus 120 ~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P-~~ 198 (815)
..|-++|++++..+.+- -...+|..+-+|||+.|=..|+.... +..+++--.| +.
T Consensus 296 FelD~FQk~Ai~~lerg-----~SVFVAAHTSAGKTvVAEYAialaq~-------------------h~TR~iYTSPIKA 351 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHLERG-----DSVFVAAHTSAGKTVVAEYAIALAQK-------------------HMTRTIYTSPIKA 351 (1248)
T ss_pred CCccHHHHHHHHHHHcC-----CeEEEEecCCCCcchHHHHHHHHHHh-------------------hccceEecchhhh
Confidence 45778999999775443 46788999999999997322222211 1147888899 66
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEeCCCCcCCcccccCCCEEEechhhhHHHhhh
Q 003502 199 AVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRK 252 (815)
Q Consensus 199 ll~qW~~Ei~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~vvi~ty~~l~~~~~~ 252 (815)
|-.|=.++|+.-++. .. +++|+..- -.++..+|+|.++|++-+.+
T Consensus 352 LSNQKfRDFk~tF~D--vg--LlTGDvqi-----nPeAsCLIMTTEILRsMLYr 396 (1248)
T KOG0947|consen 352 LSNQKFRDFKETFGD--VG--LLTGDVQI-----NPEASCLIMTTEILRSMLYR 396 (1248)
T ss_pred hccchHHHHHHhccc--cc--eeecceee-----CCCcceEeehHHHHHHHHhc
Confidence 668888999887663 22 56665432 24678999999999986543
No 136
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=99.02 E-value=7.6e-08 Score=105.00 Aligned_cols=92 Identities=20% Similarity=0.256 Sum_probs=69.0
Q ss_pred HHHhhcCCCCceEEEEecCCCcccccccccCEE--------EEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeCCcH
Q 003502 704 AINRFTEDPDCKIFLMSLKAGGVALNLTVASHV--------FLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTI 775 (815)
Q Consensus 704 ~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~v--------I~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~Ti 775 (815)
-.++|.++ +-.|-||| .+++.||.||.-.+| |-+++||+...-+|-.||.||-.|-..-.+..|++.=-=
T Consensus 849 EKqrFM~G-eK~vAIIS-EAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAG 926 (1300)
T KOG1513|consen 849 EKQRFMDG-EKLVAIIS-EAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAG 926 (1300)
T ss_pred HHhhhccc-cceeeeee-hhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhcc
Confidence 35788887 55666667 899999999966554 568999999999999999999999877666667666555
Q ss_pred HHHHHHHHHHHHHHhhhhcCCC
Q 003502 776 EERILKLQEKKKLVFEGTVGGS 797 (815)
Q Consensus 776 Ee~i~~~~~~K~~~~~~~~~~~ 797 (815)
|-+.-.+..++..-..++--|+
T Consensus 927 ErRFAS~VAKRLESLGALThGD 948 (1300)
T KOG1513|consen 927 ERRFASIVAKRLESLGALTHGD 948 (1300)
T ss_pred chHHHHHHHHHHHhhccccccc
Confidence 6666666666666665555444
No 137
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.00 E-value=3.4e-08 Score=111.51 Aligned_cols=86 Identities=14% Similarity=0.220 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEccC---hhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEec-
Q 003502 646 IEALREEIRFMVERDGSAKGIVFSQF---TSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSL- 721 (815)
Q Consensus 646 l~~l~~~l~~~~~~~~~~KvIIFs~~---~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st- 721 (815)
+..++++|+.+ |.-.|||.+. .+.++.|+.+|+.+|+++..++.. +.+.++.|..| ++.+++...
T Consensus 324 ~e~~~elvk~l-----G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~G-eidvLVGvAs 392 (1187)
T COG1110 324 LEKVVELVKKL-----GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEEG-EVDVLVGVAS 392 (1187)
T ss_pred HHHHHHHHHHh-----CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhccC-ceeEEEEecc
Confidence 45666667665 2355999998 889999999999999999888763 25789999998 899988653
Q ss_pred --CCCccccccc-ccCEEEEeCCC
Q 003502 722 --KAGGVALNLT-VASHVFLMDPW 742 (815)
Q Consensus 722 --~~g~~GlNL~-~a~~vI~~d~~ 742 (815)
.+.-.||||+ ...++||+..|
T Consensus 393 yYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 393 YYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred cccceeecCCchhheeEEEEecCC
Confidence 4556799999 78889999987
No 138
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.98 E-value=7.7e-08 Score=111.54 Aligned_cols=43 Identities=14% Similarity=0.154 Sum_probs=37.2
Q ss_pred cchHHHHHHHHHHHHHhc-------CCCceEEEEccChhHHHHHHHHHHh
Q 003502 642 SSTKIEALREEIRFMVER-------DGSAKGIVFSQFTSFLDLINYSLHK 684 (815)
Q Consensus 642 ~s~Kl~~l~~~l~~~~~~-------~~~~KvIIFs~~~~~~~~l~~~L~~ 684 (815)
..||...|.++|.++... .++.+|||||++..|...|.++|..
T Consensus 268 e~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 268 ENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred cCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 489999999999887765 4567899999999999999998865
No 139
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.97 E-value=1.5e-07 Score=109.42 Aligned_cols=165 Identities=17% Similarity=0.111 Sum_probs=110.3
Q ss_pred ccccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcC-
Q 003502 118 LITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP- 196 (815)
Q Consensus 118 ~~~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P- 196 (815)
+-..|-|+|++++.-+.+. .+.+++..+|+|||+.+--++...+..+ .+++-..|
T Consensus 116 ~~F~LD~fQ~~a~~~Ler~-----esVlV~ApTssGKTvVaeyAi~~al~~~-------------------qrviYTsPI 171 (1041)
T COG4581 116 YPFELDPFQQEAIAILERG-----ESVLVCAPTSSGKTVVAEYAIALALRDG-------------------QRVIYTSPI 171 (1041)
T ss_pred CCCCcCHHHHHHHHHHhCC-----CcEEEEccCCCCcchHHHHHHHHHHHcC-------------------CceEeccch
Confidence 4467899999999775443 6889999999999999865555544432 36899999
Q ss_pred hHHHHHHHHHHHHhcCCCCcEEEEEeCCCCcCCcccccCCCEEEechhhhHHHhhhccCCCcccccccCcccchhhhhhh
Q 003502 197 VAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVVH 276 (815)
Q Consensus 197 ~~ll~qW~~Ei~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~vvi~ty~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (815)
++|..|=.++|..-+..-.-.|-+++|+..- -.++.++++|-+.|++-+..-
T Consensus 172 KALsNQKyrdl~~~fgdv~~~vGL~TGDv~I-----N~~A~clvMTTEILRnMlyrg----------------------- 223 (1041)
T COG4581 172 KALSNQKYRDLLAKFGDVADMVGLMTGDVSI-----NPDAPCLVMTTEILRNMLYRG----------------------- 223 (1041)
T ss_pred hhhhhhHHHHHHHHhhhhhhhccceecceee-----CCCCceEEeeHHHHHHHhccC-----------------------
Confidence 7888888888876554212234556665432 245678888889998864321
Q ss_pred hhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceeeEEEeecceeccCCC-chHH
Q 003502 277 LKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRR-SNTA 355 (815)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~-s~~~ 355 (815)
.-.......||+||.|+++... .-.+
T Consensus 224 -----------------------------------------------------~~~~~~i~~ViFDEvHyi~D~eRG~VW 250 (1041)
T COG4581 224 -----------------------------------------------------SESLRDIEWVVFDEVHYIGDRERGVVW 250 (1041)
T ss_pred -----------------------------------------------------cccccccceEEEEeeeeccccccchhH
Confidence 0111234569999999998765 3334
Q ss_pred HHHH-hhhcC-cEEEeeCCCCCCchhhHHHHHHHhc
Q 003502 356 KAVL-ALESS-YKWALSGTPLQNRVGELYSLVRFLQ 389 (815)
Q Consensus 356 ~~~~-~l~~~-~r~~LTgTPi~n~~~el~~ll~~L~ 389 (815)
.-+. .+... .-++||||-- +..|+-..+.-+.
T Consensus 251 EE~Ii~lP~~v~~v~LSATv~--N~~EF~~Wi~~~~ 284 (1041)
T COG4581 251 EEVIILLPDHVRFVFLSATVP--NAEEFAEWIQRVH 284 (1041)
T ss_pred HHHHHhcCCCCcEEEEeCCCC--CHHHHHHHHHhcc
Confidence 3333 33443 5588999943 6677777776553
No 140
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.91 E-value=2.2e-08 Score=100.33 Aligned_cols=110 Identities=17% Similarity=0.116 Sum_probs=73.2
Q ss_pred cchHHHHHHHHHHHHHhhc-----cCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEc
Q 003502 121 PLLRYQKEWLAWALKQEES-----AIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVIC 195 (815)
Q Consensus 121 ~L~~yQ~~~~~~~~~~~~~-----~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~ 195 (815)
.|-.-|+++|.++-++... ...|.+|+|.+|.||-.++.++|......+.. +++-|-+
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~-----------------r~vwvS~ 99 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRK-----------------RAVWVSV 99 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCC-----------------ceEEEEC
Confidence 4778999999987766543 23588999999999999998888876554432 3556666
Q ss_pred ChHHHHHHHHHHHHhcCCCCcEEEEEeCCCCcCCcccccCCCEEEechhhhHHHh
Q 003502 196 PVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADY 250 (815)
Q Consensus 196 P~~ll~qW~~Ei~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~vvi~ty~~l~~~~ 250 (815)
...|..--.+.+...-.. .+.+..+..-+.... .-....|+++||++|....
T Consensus 100 s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~~~~~--~~~~~GvlF~TYs~L~~~~ 151 (303)
T PF13872_consen 100 SNDLKYDAERDLRDIGAD-NIPVHPLNKFKYGDI--IRLKEGVLFSTYSTLISES 151 (303)
T ss_pred ChhhhhHHHHHHHHhCCC-cccceechhhccCcC--CCCCCCccchhHHHHHhHH
Confidence 678877666777654321 334444333222211 1125579999999998763
No 141
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=98.91 E-value=1e-07 Score=97.86 Aligned_cols=222 Identities=17% Similarity=0.147 Sum_probs=130.7
Q ss_pred EEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHhcccccc---------hHHHHHHHHHHHHHhcCcccccccccccccCC
Q 003502 479 VSLRRDSLDIREADYYESLYSESQAQFNTYVQAGTVMNN---------YAHIFDLLTRLRQAVDHPYLVVYSKTASLRGE 549 (815)
Q Consensus 479 ~~~~~~~l~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~ 549 (815)
++.++++|+..|+++|+.+.......+..+.+....... ...+-..+.+++.+|+||+|+..+-....
T Consensus 5 ~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~--- 81 (297)
T PF11496_consen 5 EYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPKQ--- 81 (297)
T ss_dssp EEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S----
T ss_pred eEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCccc---
Confidence 467889999999999999998888888877755444332 25567788999999999999743211000
Q ss_pred ChhhhhhhhhhcCcccccCCCCccccCCchhhhhhHhhhccccCCCCCCCCCCCcccccccCCCCCCCCccccccCcccc
Q 003502 550 TEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSS 629 (815)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (815)
T Consensus 82 -------------------------------------------------------------------------------- 81 (297)
T PF11496_consen 82 -------------------------------------------------------------------------------- 81 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhhhhccccCcchHHHHHHHHHHHHHh---cCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHH-
Q 003502 630 SILNRIQLDEFQSSTKIEALREEIRFMVE---RDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAI- 705 (815)
Q Consensus 630 ~~~~~~~~~~~~~s~Kl~~l~~~l~~~~~---~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i- 705 (815)
.............|+|+..|-++|..++. ...+.++||.++...++++|+.+|...++.+-++.|..-..+....-
T Consensus 82 ll~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~ 161 (297)
T PF11496_consen 82 LLLSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPK 161 (297)
T ss_dssp S-STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S--
T ss_pred cccchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCc
Confidence 00001111122459999999999998865 33457999999999999999999999999999999986544432222
Q ss_pred -----------Hhhc--CCCCceEEEEecCCCcc----cccccccCEEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEE
Q 003502 706 -----------NRFT--EDPDCKIFLMSLKAGGV----ALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVR 768 (815)
Q Consensus 706 -----------~~F~--~~~~~~vlL~st~~g~~----GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~ 768 (815)
.... ......|.|+++.-... .++-...+.||-||+.+++....-..-|...-.+ +.+-|++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~-~~~Piir 240 (297)
T PF11496_consen 162 NGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN-RLCPIIR 240 (297)
T ss_dssp --------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH--------S--EEE
T ss_pred ccccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC-CCCcEEE
Confidence 0011 12356777877665443 2333466889999999998764433333332222 7899999
Q ss_pred EEeCCcHHHHHHHHHH
Q 003502 769 FLIENTIEERILKLQE 784 (815)
Q Consensus 769 l~~~~TiEe~i~~~~~ 784 (815)
|++.+|+|-.++..-.
T Consensus 241 Lv~~nSiEHi~L~~~~ 256 (297)
T PF11496_consen 241 LVPSNSIEHIELCFPK 256 (297)
T ss_dssp EEETTSHHHHHHHHTT
T ss_pred EeeCCCHHHHHHHccC
Confidence 9999999998876654
No 142
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.85 E-value=2.8e-06 Score=102.01 Aligned_cols=115 Identities=15% Similarity=0.147 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHh----CCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEec
Q 003502 646 IEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK----SGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSL 721 (815)
Q Consensus 646 l~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~----~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st 721 (815)
...+.+.|..+....+ .++|||.....+++.+...|.. .++++ +..+.. ..|.+++++|+++ +..|+| .+
T Consensus 659 ~~~ia~~i~~l~~~~~-g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~--l~q~~~-~~r~~ll~~F~~~-~~~iLl-gt 732 (850)
T TIGR01407 659 AQEIASYIIEITAITS-PKILVLFTSYEMLHMVYDMLNELPEFEGYEV--LAQGIN-GSRAKIKKRFNNG-EKAILL-GT 732 (850)
T ss_pred HHHHHHHHHHHHHhcC-CCEEEEeCCHHHHHHHHHHHhhhccccCceE--EecCCC-ccHHHHHHHHHhC-CCeEEE-Ec
Confidence 3466677766665544 4899999999999999988875 34443 333332 5788999999985 445555 67
Q ss_pred CCCcccccccccC--EEEEeCCCCC-c-----------------------------chHHHHhHhhhcCCCCCcEEE
Q 003502 722 KAGGVALNLTVAS--HVFLMDPWWN-P-----------------------------AVEQQAQDRIHRIGQYKPIRI 766 (815)
Q Consensus 722 ~~g~~GlNL~~a~--~vI~~d~~wn-p-----------------------------~~~~QaigR~~R~GQ~~~V~v 766 (815)
.+..+|+|+++.. .||+.-.|+- | ....|++||+.|-.+.+.|.+
T Consensus 733 ~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ 809 (850)
T TIGR01407 733 SSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIV 809 (850)
T ss_pred ceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEE
Confidence 9999999999655 4666654432 1 346789999999887776543
No 143
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.83 E-value=8.5e-07 Score=101.18 Aligned_cols=84 Identities=11% Similarity=0.052 Sum_probs=64.2
Q ss_pred chHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHH-HHHHHhhcCCCCceEEEEec
Q 003502 643 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPAR-DAAINRFTEDPDCKIFLMSL 721 (815)
Q Consensus 643 s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R-~~~i~~F~~~~~~~vlL~st 721 (815)
..|..++++.+....+ .+..|||-|.+....+.|...|...|+++..++......++ .++|.+ .| ....+-++|
T Consensus 407 ~~K~~AI~~ei~~~~~--~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~--AG-~~G~VTIAT 481 (870)
T CHL00122 407 LSKWRAIADECLQMHQ--TGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ--AG-RKGSITIAT 481 (870)
T ss_pred HHHHHHHHHHHHHHHh--cCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh--cC-CCCcEEEec
Confidence 5688999998887744 56899999999999999999999999999999987422233 345544 33 334456689
Q ss_pred CCCccccccc
Q 003502 722 KAGGVALNLT 731 (815)
Q Consensus 722 ~~g~~GlNL~ 731 (815)
..+|.|.|+.
T Consensus 482 NMAGRGTDI~ 491 (870)
T CHL00122 482 NMAGRGTDII 491 (870)
T ss_pred cccCCCcCee
Confidence 9999997744
No 144
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.82 E-value=5.9e-07 Score=107.46 Aligned_cols=69 Identities=19% Similarity=0.177 Sum_probs=48.1
Q ss_pred HHHHHHHhh-cCCCCceEEEEecCCCcccccccccCEEEEeCCCCCcchHHHHhHhhhcC-CC-CCcEEEEEEE
Q 003502 700 ARDAAINRF-TEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRI-GQ-YKPIRIVRFL 770 (815)
Q Consensus 700 ~R~~~i~~F-~~~~~~~vlL~st~~g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~-GQ-~~~V~vy~l~ 770 (815)
.+.....+| .....+.++|+. +..=+|.|-+..+++. +|-+--.....||+.|+.|. +. +..-.|..++
T Consensus 579 ~~~~~~~r~~~~~d~~kilIV~-dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~ 650 (962)
T COG0610 579 EKKDLIKRFKLKDDPLDLLIVV-DMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFR 650 (962)
T ss_pred HHhhhhhhhcCcCCCCCEEEEE-ccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECc
Confidence 344556665 455577777766 8888899999887765 45557788899999999996 44 2334444443
No 145
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.75 E-value=4.9e-08 Score=92.69 Aligned_cols=45 Identities=18% Similarity=0.133 Sum_probs=42.2
Q ss_pred EEecCCCcccccccccCEEEEeCCCCCcchHHHHhHhhhcCCCCC
Q 003502 718 LMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYK 762 (815)
Q Consensus 718 L~st~~g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~ 762 (815)
+++|.+.|.|+++.+.|.+|+||.|-.+.+|.++.||++|.|-+-
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkg 346 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKG 346 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhcccccc
Confidence 558899999999999999999999999999999999999999654
No 146
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.74 E-value=1.8e-06 Score=99.49 Aligned_cols=120 Identities=15% Similarity=0.126 Sum_probs=94.8
Q ss_pred cchHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEec
Q 003502 642 SSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSL 721 (815)
Q Consensus 642 ~s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st 721 (815)
...|..++++.+..+-+ .|..|||-|.+....+.|...|...||++..++.... ++++-|-.= .| ..-.+-++|
T Consensus 610 ~~eK~~Aii~ei~~~~~--~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h--~~EAeIVA~-AG-~~GaVTIAT 683 (1112)
T PRK12901 610 KREKYNAVIEEITELSE--AGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH--QKEAEIVAE-AG-QPGTVTIAT 683 (1112)
T ss_pred HHHHHHHHHHHHHHHHH--CCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch--hhHHHHHHh-cC-CCCcEEEec
Confidence 36799999999998854 5689999999999999999999999999988877643 444333222 12 233355689
Q ss_pred CCCccccccc--------ccCEEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEE
Q 003502 722 KAGGVALNLT--------VASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIV 767 (815)
Q Consensus 722 ~~g~~GlNL~--------~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy 767 (815)
..+|.|-|+. +.=+||.-+.+-+...+.|..||++|.|..-....|
T Consensus 684 NMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~ 737 (1112)
T PRK12901 684 NMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY 737 (1112)
T ss_pred cCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE
Confidence 9999999876 556789999999999999999999999986554443
No 147
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.67 E-value=6e-06 Score=94.26 Aligned_cols=84 Identities=12% Similarity=0.099 Sum_probs=64.1
Q ss_pred chHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCC-CHHHHHHHHHhhcCCCCceEEEEec
Q 003502 643 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSM-SIPARDAAINRFTEDPDCKIFLMSL 721 (815)
Q Consensus 643 s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~-~~~~R~~~i~~F~~~~~~~vlL~st 721 (815)
..|..++++.+..+-+ .|..|||-|.+....+.|...|...|+++..++... ...+-.++|.+ .| ...-+-++|
T Consensus 422 ~~K~~Ai~~ei~~~~~--~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~--AG-~~GaVTIAT 496 (939)
T PRK12902 422 IAKWRAVANETAEMHK--QGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQ--AG-RKGAVTIAT 496 (939)
T ss_pred HHHHHHHHHHHHHHHh--CCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHh--cC-CCCcEEEec
Confidence 5789999999988744 568999999999999999999999999999999873 32333345554 23 333355588
Q ss_pred CCCccccccc
Q 003502 722 KAGGVALNLT 731 (815)
Q Consensus 722 ~~g~~GlNL~ 731 (815)
..+|.|-|+.
T Consensus 497 NMAGRGTDIk 506 (939)
T PRK12902 497 NMAGRGTDII 506 (939)
T ss_pred cCCCCCcCEe
Confidence 9999996654
No 148
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=98.67 E-value=9.4e-07 Score=99.68 Aligned_cols=108 Identities=23% Similarity=0.207 Sum_probs=68.8
Q ss_pred cchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcC-hHH
Q 003502 121 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VAA 199 (815)
Q Consensus 121 ~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P-~~l 199 (815)
.++.+|.+++.--.-+ ..++.|.+.+++.|||+.|=-+++...-... +.+|.+.| .++
T Consensus 223 ~~fewq~ecls~~~~~---e~~nliys~Pts~gktlvaeilml~~~l~~r------------------r~~llilp~vsi 281 (1008)
T KOG0950|consen 223 KLFEWQAECLSLPRLL---ERKNLIYSLPTSAGKTLVAEILMLREVLCRR------------------RNVLLILPYVSI 281 (1008)
T ss_pred HHHHHHHHHhcchhhh---cccceEEeCCCccchHHHHHHHHHHHHHHHh------------------hceeEecceeeh
Confidence 4566776665332111 3368899999999999998544444332222 47788888 455
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEeCCCCcCCcccccCCCEEEechhhhHHHhh
Q 003502 200 VTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYR 251 (815)
Q Consensus 200 l~qW~~Ei~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~vvi~ty~~l~~~~~ 251 (815)
+.-=..++..+..+..+.|--|.|... .......-++.|+|-+.......
T Consensus 282 v~Ek~~~l~~~~~~~G~~ve~y~g~~~--p~~~~k~~sv~i~tiEkanslin 331 (1008)
T KOG0950|consen 282 VQEKISALSPFSIDLGFPVEEYAGRFP--PEKRRKRESVAIATIEKANSLIN 331 (1008)
T ss_pred hHHHHhhhhhhccccCCcchhhcccCC--CCCcccceeeeeeehHhhHhHHH
Confidence 555566676666666777777776432 22334566788999887665543
No 149
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.61 E-value=2.3e-06 Score=96.25 Aligned_cols=74 Identities=16% Similarity=0.171 Sum_probs=60.1
Q ss_pred EecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEeCC-CCCcchHHHHhHhhhcCCCCCcEEEE
Q 003502 692 LVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDP-WWNPAVEQQAQDRIHRIGQYKPIRIV 767 (815)
Q Consensus 692 i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~~d~-~wnp~~~~QaigR~~R~GQ~~~V~vy 767 (815)
-|.+++...|..+---|+.+ ...|++ +|...+.|||+++-..|+-.|. -.||-.|.|+-|||+|-|=..--+|.
T Consensus 968 HHaglNr~yR~~VEvLFR~g-~L~Vlf-aT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~ 1042 (1330)
T KOG0949|consen 968 HHAGLNRKYRSLVEVLFRQG-HLQVLF-ATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVV 1042 (1330)
T ss_pred cccccchHHHHHHHHHhhcC-ceEEEE-EeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceE
Confidence 36778888898888889887 888877 8899999999997777776664 58999999999999999865543333
No 150
>PF13871 Helicase_C_4: Helicase_C-like
Probab=98.57 E-value=3.3e-07 Score=91.93 Aligned_cols=97 Identities=16% Similarity=0.200 Sum_probs=82.4
Q ss_pred HHHHhhcCCCCceEEEEecCCCccccccccc-------CE-EEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeCCc
Q 003502 703 AAINRFTEDPDCKIFLMSLKAGGVALNLTVA-------SH-VFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENT 774 (815)
Q Consensus 703 ~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a-------~~-vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~T 774 (815)
...+.|++| ...|+|+| .+|++|++||.- .+ -|.+++||+....+|-.||+||-||..+..+..+++.-.
T Consensus 52 ~e~~~F~~g-~k~v~iis-~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~ 129 (278)
T PF13871_consen 52 AEKQAFMDG-EKDVAIIS-DAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLP 129 (278)
T ss_pred HHHHHHhCC-CceEEEEe-cccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCH
Confidence 567899998 78888887 999999999942 12 478999999999999999999999998866666777777
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCcccc
Q 003502 775 IEERILKLQEKKKLVFEGTVGGSADAF 801 (815)
Q Consensus 775 iEe~i~~~~~~K~~~~~~~~~~~~~~~ 801 (815)
.|.+....+.+|.....++..|+....
T Consensus 130 gE~Rfas~va~rL~sLgAlt~gdr~~~ 156 (278)
T PF13871_consen 130 GERRFASTVARRLESLGALTRGDRRAG 156 (278)
T ss_pred HHHHHHHHHHHHHhhccccccCccccc
Confidence 899999999999999999887766554
No 151
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.56 E-value=1.7e-06 Score=94.49 Aligned_cols=101 Identities=14% Similarity=0.081 Sum_probs=67.2
Q ss_pred ccccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcC-
Q 003502 118 LITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP- 196 (815)
Q Consensus 118 ~~~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P- 196 (815)
....|-|+|..++.-+-+. ...++...+..|||+.|=-.|+..++.. .+++--.|
T Consensus 126 YPF~LDpFQ~~aI~Cidr~-----eSVLVSAHTSAGKTVVAeYAIA~sLr~k-------------------QRVIYTSPI 181 (1041)
T KOG0948|consen 126 YPFTLDPFQSTAIKCIDRG-----ESVLVSAHTSAGKTVVAEYAIAMSLREK-------------------QRVIYTSPI 181 (1041)
T ss_pred CCcccCchHhhhhhhhcCC-----ceEEEEeecCCCcchHHHHHHHHHHHhc-------------------CeEEeeChh
Confidence 3456889999988664333 4678888999999999843343333322 37888889
Q ss_pred hHHHHHHHHHHHHhcCCCCcEEEEEeCCCCcCCcccccCCCEEEechhhhHHHhh
Q 003502 197 VAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYR 251 (815)
Q Consensus 197 ~~ll~qW~~Ei~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~vvi~ty~~l~~~~~ 251 (815)
++|-.|=.+|+..=+. .|-.-+|+-. --.++.-+|+|.+.|++-+.
T Consensus 182 KALSNQKYREl~~EF~----DVGLMTGDVT-----InP~ASCLVMTTEILRsMLY 227 (1041)
T KOG0948|consen 182 KALSNQKYRELLEEFK----DVGLMTGDVT-----INPDASCLVMTTEILRSMLY 227 (1041)
T ss_pred hhhcchhHHHHHHHhc----ccceeeccee-----eCCCCceeeeHHHHHHHHHh
Confidence 6676888888876443 2333444432 12456678999999988653
No 152
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.51 E-value=2.2e-05 Score=85.88 Aligned_cols=111 Identities=17% Similarity=0.217 Sum_probs=80.6
Q ss_pred ceEEEEccChhHHHHHHHHHHhC----C--C--cEEEEecCCCHHHHHHHHHhhcCCC-CceEEEEecCCCccccccccc
Q 003502 663 AKGIVFSQFTSFLDLINYSLHKS----G--V--NCVQLVGSMSIPARDAAINRFTEDP-DCKIFLMSLKAGGVALNLTVA 733 (815)
Q Consensus 663 ~KvIIFs~~~~~~~~l~~~L~~~----g--~--~~~~i~G~~~~~~R~~~i~~F~~~~-~~~vlL~st~~g~~GlNL~~a 733 (815)
.-+|||=.-.+.++.+...|... + . -++-++|+.+.++..+ -|...| +.+-+++||+.+.+.|.+.+.
T Consensus 259 GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~r---vF~p~p~g~RKvIlsTNIAETSlTI~GI 335 (674)
T KOG0922|consen 259 GDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSR---VFDPAPPGKRKVILSTNIAETSLTIDGI 335 (674)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhc---cccCCCCCcceEEEEcceeeeeEEecce
Confidence 37889988877777776666543 1 1 1356899999887544 466533 677777799999999999998
Q ss_pred CEEE--------EeCCC-------CCcchHHHHhHhhhcCCCCCcEEEEEEEeCCcHH
Q 003502 734 SHVF--------LMDPW-------WNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIE 776 (815)
Q Consensus 734 ~~vI--------~~d~~-------wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~TiE 776 (815)
.+|| .|+|. --|..-.||.-|++|.|.+.+-.+|||+++.-.+
T Consensus 336 ~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 336 RYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYD 393 (674)
T ss_pred EEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHh
Confidence 8886 34441 1124566788888888889999999999987663
No 153
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.48 E-value=6.2e-07 Score=79.61 Aligned_cols=79 Identities=18% Similarity=0.204 Sum_probs=42.6
Q ss_pred CeeeccCCCchHHHHHHHHHh-ccccccccCCCCCCCCCCCCccCCccEEEEcChHHH-HHHHHHHHHhcCCCCcEEEEE
Q 003502 144 GILADEMGMGKTIQAIALVLA-KREIRGTIGELDASSSSSTGLLGIKATLVICPVAAV-TQWVSEINRFTSVGSTKVLIY 221 (815)
Q Consensus 144 ~ILade~GlGKTi~ai~li~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~ll-~qW~~Ei~~~~~~~~~~v~~~ 221 (815)
.+|-..+|+|||-..+--+.. .... ..++||+.|..++ ..-.+.+ . ...+. +
T Consensus 7 ~~~d~hpGaGKTr~vlp~~~~~~i~~-------------------~~rvLvL~PTRvva~em~~aL----~--~~~~~-~ 60 (148)
T PF07652_consen 7 TVLDLHPGAGKTRRVLPEIVREAIKR-------------------RLRVLVLAPTRVVAEEMYEAL----K--GLPVR-F 60 (148)
T ss_dssp EEEE--TTSSTTTTHHHHHHHHHHHT-------------------T--EEEEESSHHHHHHHHHHT----T--TSSEE-E
T ss_pred eEEecCCCCCCcccccHHHHHHHHHc-------------------cCeEEEecccHHHHHHHHHHH----h--cCCcc-c
Confidence 467778999999987643332 2221 2599999997665 4444444 3 22322 2
Q ss_pred eCCCCcCCcccccCCCEEEechhhhHHHh
Q 003502 222 HGSNRERSAKQFSEFDFVITTYSIIEADY 250 (815)
Q Consensus 222 ~g~~~~~~~~~~~~~~vvi~ty~~l~~~~ 250 (815)
+...... ......-|-+++|.++...+
T Consensus 61 ~t~~~~~--~~~g~~~i~vMc~at~~~~~ 87 (148)
T PF07652_consen 61 HTNARMR--THFGSSIIDVMCHATYGHFL 87 (148)
T ss_dssp ESTTSS------SSSSEEEEEHHHHHHHH
T ss_pred Cceeeec--cccCCCcccccccHHHHHHh
Confidence 2222211 23456678899999987654
No 154
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.45 E-value=1.3e-05 Score=92.87 Aligned_cols=109 Identities=19% Similarity=0.193 Sum_probs=78.6
Q ss_pred CceEEEEccChhHHHHHHHHHHh----CCCcEEEEecCCCHHHHHHHHHhhcCCCCc-eEEEEecCCCcccccccccCEE
Q 003502 662 SAKGIVFSQFTSFLDLINYSLHK----SGVNCVQLVGSMSIPARDAAINRFTEDPDC-KIFLMSLKAGGVALNLTVASHV 736 (815)
Q Consensus 662 ~~KvIIFs~~~~~~~~l~~~L~~----~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~-~vlL~st~~g~~GlNL~~a~~v 736 (815)
..-+|||-.-...++.....|.. ..+.++-++|..+.++..+ -|+..++- +-+++||+++.++|.+.+..+|
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~r---vF~p~~~~~RKVVlATNIAETSLTI~gIr~V 335 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVR---VFEPAPGGKRKVVLATNIAETSLTIPGIRYV 335 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHh---hcCCCCCCcceEEEEccccccceeeCCeEEE
Confidence 34789998888888888888876 3467788999999888766 56653333 5356699999999999999888
Q ss_pred E--------EeCCC----------CCcchHHHHhHhhhcCCCCCcEEEEEEEeCCcHH
Q 003502 737 F--------LMDPW----------WNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIE 776 (815)
Q Consensus 737 I--------~~d~~----------wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~TiE 776 (815)
| .|++- -+-+.-.||-|||+| +.+=..|||++++..+
T Consensus 336 IDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR---~~pGicyRLyse~~~~ 390 (845)
T COG1643 336 IDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGR---TGPGICYRLYSEEDFL 390 (845)
T ss_pred ecCCcccccccccccCceeeeEEEechhhhhhhcccccc---CCCceEEEecCHHHHH
Confidence 7 33331 122455566666666 5566899999986554
No 155
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=98.45 E-value=5.7e-07 Score=91.87 Aligned_cols=96 Identities=20% Similarity=0.248 Sum_probs=85.8
Q ss_pred CCceEEEEccChhHHHHHHHHHHhCC---CcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEE
Q 003502 661 GSAKGIVFSQFTSFLDLINYSLHKSG---VNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVF 737 (815)
Q Consensus 661 ~~~KvIIFs~~~~~~~~l~~~L~~~g---~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI 737 (815)
.-.|+||||....-.|-|++++.+.| +.++.++|...+.+|.+.++.|... +++. |+.|++++.||+++....+|
T Consensus 504 ~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~-dvkf-lictdvaargldi~g~p~~i 581 (725)
T KOG0349|consen 504 AMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKF-DVKF-LICTDVAARGLDITGLPFMI 581 (725)
T ss_pred ccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhc-CeEE-EEEehhhhccccccCCceEE
Confidence 45799999999999999999998875 5678899999999999999999986 6655 55779999999999999999
Q ss_pred EeCCCCCcchHHHHhHhhhcC
Q 003502 738 LMDPWWNPAVEQQAQDRIHRI 758 (815)
Q Consensus 738 ~~d~~wnp~~~~QaigR~~R~ 758 (815)
++.+|-....|.+||||++|.
T Consensus 582 nvtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 582 NVTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred EEecCcccchhhhhhhccchh
Confidence 999999999999999988874
No 156
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.30 E-value=0.00011 Score=85.09 Aligned_cols=125 Identities=14% Similarity=0.151 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhC-------CCcEEEEecCCCHHHHHHHHHhhcCCCCceEE
Q 003502 645 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS-------GVNCVQLVGSMSIPARDAAINRFTEDPDCKIF 717 (815)
Q Consensus 645 Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~-------g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vl 717 (815)
....+.+++..+.+.....-+|||-.-...+..+...|... .+-+..+|+.++..+.+.+...- .++.+-+
T Consensus 396 d~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~p--p~g~RKI 473 (924)
T KOG0920|consen 396 DYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRP--PKGTRKI 473 (924)
T ss_pred cHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCC--CCCcchh
Confidence 35566666666666555668999999988888888888642 24456689999887766654443 2356667
Q ss_pred EEecCCCcccccccccCEEE--------EeCCCC----------CcchHHHHhHhhhcCCCCCcEEEEEEEeCCc
Q 003502 718 LMSLKAGGVALNLTVASHVF--------LMDPWW----------NPAVEQQAQDRIHRIGQYKPIRIVRFLIENT 774 (815)
Q Consensus 718 L~st~~g~~GlNL~~a~~vI--------~~d~~w----------np~~~~QaigR~~R~GQ~~~V~vy~l~~~~T 774 (815)
|++|..+..+|.+.++-+|| .|||.- +-+.-.||.|||+| ..+=..|+|++..-
T Consensus 474 IlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGR---v~~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 474 ILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGR---VRPGICYHLYTRSR 545 (924)
T ss_pred hhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccC---ccCCeeEEeechhh
Confidence 77999999999999988877 566532 23667899998877 44557888887643
No 157
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.22 E-value=9.8e-06 Score=94.33 Aligned_cols=70 Identities=16% Similarity=0.100 Sum_probs=55.3
Q ss_pred ceEEEEecCCCcccccccccCEEEEeCCCCCcchHHHHhHhhhcC-----CC---CCcEEEEEEEeCCcHHHHHHHHHH
Q 003502 714 CKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRI-----GQ---YKPIRIVRFLIENTIEERILKLQE 784 (815)
Q Consensus 714 ~~vlL~st~~g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~-----GQ---~~~V~vy~l~~~~TiEe~i~~~~~ 784 (815)
+.-||+|-.+..+|.+-+++-.+.-+...-+...-.|-+||..|+ |. .+++ +..+++..|.++..-.+|.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~-~LTvianesy~dFa~~LQ~ 578 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEF-RLNYLIDYDEKDFASKLVG 578 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccE-EEEEEeCccHHHHHHHHHH
Confidence 556777999999999999998888888888889999999999996 32 2346 6667788887777766655
No 158
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.09 E-value=0.00071 Score=76.97 Aligned_cols=99 Identities=13% Similarity=0.162 Sum_probs=70.9
Q ss_pred CCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCccccccccc--CEEEE
Q 003502 661 GSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVA--SHVFL 738 (815)
Q Consensus 661 ~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a--~~vI~ 738 (815)
.|++|-|||....++++++++....+.+++.++|..+..+ ++.| ..++|++ -|.+...|+++-.. +.|+.
T Consensus 281 ~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d----v~~W---~~~~Vvi-YT~~itvG~Sf~~~HF~~~f~ 352 (824)
T PF02399_consen 281 AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED----VESW---KKYDVVI-YTPVITVGLSFEEKHFDSMFA 352 (824)
T ss_pred CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc----cccc---cceeEEE-EeceEEEEeccchhhceEEEE
Confidence 3589999999999999999999999999999988776542 2333 3677766 55888899998632 23443
Q ss_pred e--CCCCCcc--hHHHHhHhhhcCCCCCcEEEEE
Q 003502 739 M--DPWWNPA--VEQQAQDRIHRIGQYKPIRIVR 768 (815)
Q Consensus 739 ~--d~~wnp~--~~~QaigR~~R~GQ~~~V~vy~ 768 (815)
| .....|. ...|.+||+..+.. +++.||.
T Consensus 353 yvk~~~~gpd~~s~~Q~lgRvR~l~~-~ei~v~~ 385 (824)
T PF02399_consen 353 YVKPMSYGPDMVSVYQMLGRVRSLLD-NEIYVYI 385 (824)
T ss_pred EecCCCCCCcHHHHHHHHHHHHhhcc-CeEEEEE
Confidence 3 2233454 35899999988874 4555553
No 159
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.06 E-value=0.00027 Score=80.77 Aligned_cols=120 Identities=18% Similarity=0.148 Sum_probs=90.9
Q ss_pred chHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 003502 643 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 722 (815)
Q Consensus 643 s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~ 722 (815)
-.|..++++.|...-. .+..|||-+.+......+...|.+.||+...++..-. .|+.-+-.+.- ..-.+-++|.
T Consensus 412 ~~K~~Aiv~~I~~~~~--~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~AG--~~gaVTiATN 485 (822)
T COG0653 412 EEKFKAIVEDIKERHE--KGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQAG--QPGAVTIATN 485 (822)
T ss_pred HHHHHHHHHHHHHHHh--cCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhcC--CCCccccccc
Confidence 5688999999988855 4589999999999999999999999999988888764 55555555542 2223445899
Q ss_pred CCccccccc-ccC----------EEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEE
Q 003502 723 AGGVALNLT-VAS----------HVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRF 769 (815)
Q Consensus 723 ~g~~GlNL~-~a~----------~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l 769 (815)
.+|.|-++. ..+ +||=-+-+-+-..+.|-.||++|.| ..-...+.|
T Consensus 486 MAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQG-DpG~S~F~l 542 (822)
T COG0653 486 MAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQG-DPGSSRFYL 542 (822)
T ss_pred cccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCC-Ccchhhhhh
Confidence 999999988 444 3565666666677779999999999 333455444
No 160
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.98 E-value=0.00017 Score=78.63 Aligned_cols=92 Identities=14% Similarity=0.250 Sum_probs=64.0
Q ss_pred CCcEEEEecCCCHHHHHHHHHhhcC-CCCceEEEEecCCCcccccccccCEEEEeCC----CCCc-----------chHH
Q 003502 686 GVNCVQLVGSMSIPARDAAINRFTE-DPDCKIFLMSLKAGGVALNLTVASHVFLMDP----WWNP-----------AVEQ 749 (815)
Q Consensus 686 g~~~~~i~G~~~~~~R~~~i~~F~~-~~~~~vlL~st~~g~~GlNL~~a~~vI~~d~----~wnp-----------~~~~ 749 (815)
++.++-|....+.+-..++ |+. .++.+-+|++|..+.+.|.+++..+||=.-. .+|| ..-.
T Consensus 597 ~L~vlpiYSQLp~dlQ~ki---Fq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~A 673 (1042)
T KOG0924|consen 597 DLAVLPIYSQLPADLQAKI---FQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQA 673 (1042)
T ss_pred ceEEEeehhhCchhhhhhh---cccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhc
Confidence 5667778888886655444 552 4477777779999999999999888873221 2333 3334
Q ss_pred HHhHhhhcCCCCCcEEEEEEEeCCcHHHHHH
Q 003502 750 QAQDRIHRIGQYKPIRIVRFLIENTIEERIL 780 (815)
Q Consensus 750 QaigR~~R~GQ~~~V~vy~l~~~~TiEe~i~ 780 (815)
||--|++|.|.+.+-+.|||+++++....|+
T Consensus 674 nA~QRaGRAGRt~pG~cYRlYTe~ay~~eml 704 (1042)
T KOG0924|consen 674 NADQRAGRAGRTGPGTCYRLYTEDAYKNEML 704 (1042)
T ss_pred cchhhccccCCCCCcceeeehhhhHHHhhcc
Confidence 4555566666677889999999988777655
No 161
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.86 E-value=0.00012 Score=75.96 Aligned_cols=76 Identities=16% Similarity=0.175 Sum_probs=48.6
Q ss_pred cchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcCh-HH
Q 003502 121 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-AA 199 (815)
Q Consensus 121 ~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-~l 199 (815)
..||.|++...-+...+..+ ..+|+-.++|+|||+..+..++.......... ...+++++++. ++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~-~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~-------------~~~kvi~~t~T~~~ 73 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRG-KIGILESPTGTGKTLSLLCLTLTWLRSFPERI-------------QKIKLIYLSRTVSE 73 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcC-CcEEEECCCCcchhHHHHHHHHHHHHhCcccc-------------cccceeEEeccHHH
Confidence 35999999888877777665 47788889999999998766643322211100 01256666664 34
Q ss_pred HHHHHHHHHHh
Q 003502 200 VTQWVSEINRF 210 (815)
Q Consensus 200 l~qW~~Ei~~~ 210 (815)
+.|-..++++.
T Consensus 74 ~~q~i~~l~~~ 84 (289)
T smart00489 74 IEKRLEELRKL 84 (289)
T ss_pred HHHHHHHHHhc
Confidence 45555666654
No 162
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.86 E-value=0.00012 Score=75.96 Aligned_cols=76 Identities=16% Similarity=0.175 Sum_probs=48.6
Q ss_pred cchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcCh-HH
Q 003502 121 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-AA 199 (815)
Q Consensus 121 ~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-~l 199 (815)
..||.|++...-+...+..+ ..+|+-.++|+|||+..+..++.......... ...+++++++. ++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~-~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~-------------~~~kvi~~t~T~~~ 73 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRG-KIGILESPTGTGKTLSLLCLTLTWLRSFPERI-------------QKIKLIYLSRTVSE 73 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcC-CcEEEECCCCcchhHHHHHHHHHHHHhCcccc-------------cccceeEEeccHHH
Confidence 35999999888877777665 47788889999999998766643322211100 01256666664 34
Q ss_pred HHHHHHHHHHh
Q 003502 200 VTQWVSEINRF 210 (815)
Q Consensus 200 l~qW~~Ei~~~ 210 (815)
+.|-..++++.
T Consensus 74 ~~q~i~~l~~~ 84 (289)
T smart00488 74 IEKRLEELRKL 84 (289)
T ss_pred HHHHHHHHHhc
Confidence 45555666654
No 163
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.81 E-value=0.0016 Score=73.38 Aligned_cols=47 Identities=13% Similarity=-0.042 Sum_probs=42.1
Q ss_pred CceEEEEecCCCcccccccccCEEEEeCCCCCcchHHHHhHhhhcCC
Q 003502 713 DCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIG 759 (815)
Q Consensus 713 ~~~vlL~st~~g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~G 759 (815)
++.-||.|-.+.-+|.|=+..=++.-+-+.-+-..-.|-+||..|+-
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLa 528 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLA 528 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeee
Confidence 44667889999999999999999999999999999999999999973
No 164
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.80 E-value=0.00075 Score=73.62 Aligned_cols=78 Identities=18% Similarity=0.293 Sum_probs=54.1
Q ss_pred cEEEEecCCCHHHHHHHHHhhcC-CCCceEEEEecCCCcccccccccCEEEEeCC------CCCc--------------c
Q 003502 688 NCVQLVGSMSIPARDAAINRFTE-DPDCKIFLMSLKAGGVALNLTVASHVFLMDP------WWNP--------------A 746 (815)
Q Consensus 688 ~~~~i~G~~~~~~R~~~i~~F~~-~~~~~vlL~st~~g~~GlNL~~a~~vI~~d~------~wnp--------------~ 746 (815)
-++-|+.+.+.+....+ |.. .++.+-++++|..+.+.|.+.+.++|| || .+|| +
T Consensus 508 iv~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTIdgI~yVi--DpGf~K~nsynprtGmesL~v~piSKA 582 (902)
T KOG0923|consen 508 IVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTIDGIKYVI--DPGFVKQNSYNPRTGMESLLVTPISKA 582 (902)
T ss_pred EEeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceeecCeEEEe--cCccccccCcCCCcCceeEEEeeechh
Confidence 35668889887776555 544 335666666889999999999888876 33 2344 5
Q ss_pred hHHHHhHhhhcCCCCCcEEEEEEEeCC
Q 003502 747 VEQQAQDRIHRIGQYKPIRIVRFLIEN 773 (815)
Q Consensus 747 ~~~QaigR~~R~GQ~~~V~vy~l~~~~ 773 (815)
.-.||-|||+|.|- =..|||++.-
T Consensus 583 sA~QRaGRAGRtgP---GKCfRLYt~~ 606 (902)
T KOG0923|consen 583 SANQRAGRAGRTGP---GKCFRLYTAW 606 (902)
T ss_pred hhhhhccccCCCCC---CceEEeechh
Confidence 56788888877664 4677777743
No 165
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.77 E-value=0.00011 Score=78.51 Aligned_cols=99 Identities=21% Similarity=0.345 Sum_probs=78.0
Q ss_pred CCceEEEEccChhHHHHHHHHHHhCCCc-EEEEecCCCHHHHHHHHHhhcC-CCCceEEEEecCCCcccccccccCEEEE
Q 003502 661 GSAKGIVFSQFTSFLDLINYSLHKSGVN-CVQLVGSMSIPARDAAINRFTE-DPDCKIFLMSLKAGGVALNLTVASHVFL 738 (815)
Q Consensus 661 ~~~KvIIFs~~~~~~~~l~~~L~~~g~~-~~~i~G~~~~~~R~~~i~~F~~-~~~~~vlL~st~~g~~GlNL~~a~~vI~ 738 (815)
+|.=|+-||. .-+-.+...++++|.. +++|.|+.+++.|.+--..||+ +++++|++ ++++.|.||||. ..+|||
T Consensus 357 ~GDCvV~FSk--k~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlV-AsDAIGMGLNL~-IrRiiF 432 (700)
T KOG0953|consen 357 PGDCVVAFSK--KDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLV-ASDAIGMGLNLN-IRRIIF 432 (700)
T ss_pred CCCeEEEeeh--hhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEE-eecccccccccc-eeEEEE
Confidence 4565666653 4444556677777765 9999999999999999999998 34777777 569999999995 788999
Q ss_pred eCCC---------CCcchHHHHhHhhhcCCCCCc
Q 003502 739 MDPW---------WNPAVEQQAQDRIHRIGQYKP 763 (815)
Q Consensus 739 ~d~~---------wnp~~~~QaigR~~R~GQ~~~ 763 (815)
++.. -.-++.-|.-|||+|.|.+-+
T Consensus 433 ~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~ 466 (700)
T KOG0953|consen 433 YSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYP 466 (700)
T ss_pred eecccCCcccceeccHHHHHHHhhcccccccCCc
Confidence 9864 445788899999999987655
No 166
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.66 E-value=0.00058 Score=71.73 Aligned_cols=59 Identities=25% Similarity=0.418 Sum_probs=44.6
Q ss_pred eEEEEecCCCcccccccccCEEEEeCCC------CC-----------cchHHHHhHhhhcCCCCCcEEEEEEEeCCcH
Q 003502 715 KIFLMSLKAGGVALNLTVASHVFLMDPW------WN-----------PAVEQQAQDRIHRIGQYKPIRIVRFLIENTI 775 (815)
Q Consensus 715 ~vlL~st~~g~~GlNL~~a~~vI~~d~~------wn-----------p~~~~QaigR~~R~GQ~~~V~vy~l~~~~Ti 775 (815)
+-+++||..+...+.+.+.-+|| ||. +| |..-.||.-|++|.|.+++-..++|+++..+
T Consensus 314 RkvVvstniaetsltidgiv~VI--DpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~ 389 (699)
T KOG0925|consen 314 RKVVVSTNIAETSLTIDGIVFVI--DPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAF 389 (699)
T ss_pred ceEEEEecchheeeeeccEEEEe--cCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhh
Confidence 44566999999988887665555 442 33 4666788888889999999999999987544
No 167
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.0005 Score=76.45 Aligned_cols=75 Identities=20% Similarity=0.256 Sum_probs=52.2
Q ss_pred EecCCCHHHHHHHHHhhcC-CCCceEEEEecCCCcccccccccCEEE--------EeCC---------CC-CcchHHHHh
Q 003502 692 LVGSMSIPARDAAINRFTE-DPDCKIFLMSLKAGGVALNLTVASHVF--------LMDP---------WW-NPAVEQQAQ 752 (815)
Q Consensus 692 i~G~~~~~~R~~~i~~F~~-~~~~~vlL~st~~g~~GlNL~~a~~vI--------~~d~---------~w-np~~~~Qai 752 (815)
++.=.+...+. .-|.. ..+.+..+++|.++.+.|.+++..+|| +||. .| +-+.-.||-
T Consensus 610 LYSLLs~~~Q~---RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRA 686 (1172)
T KOG0926|consen 610 LYSLLSTEKQM---RVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRA 686 (1172)
T ss_pred hhhhcCHHHhh---hhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhc
Confidence 34434444433 34554 337888889999999999999999988 3332 33 346667999
Q ss_pred HhhhcCCCCCcEEEEEEEeC
Q 003502 753 DRIHRIGQYKPIRIVRFLIE 772 (815)
Q Consensus 753 gR~~R~GQ~~~V~vy~l~~~ 772 (815)
|||+|+|-- |.|||+..
T Consensus 687 GRAGRtgpG---HcYRLYSS 703 (1172)
T KOG0926|consen 687 GRAGRTGPG---HCYRLYSS 703 (1172)
T ss_pred cccCCCCCC---ceeehhhh
Confidence 999998865 77888753
No 168
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.61 E-value=0.00063 Score=68.71 Aligned_cols=102 Identities=21% Similarity=0.154 Sum_probs=62.1
Q ss_pred cchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHHH
Q 003502 121 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAV 200 (815)
Q Consensus 121 ~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~ll 200 (815)
.+++-|+.++--| . .|-|.=..+|=|||+++. +.+.+....+ +++=||+.+..+
T Consensus 77 ~p~~vQll~~l~L--~-----~G~laEm~TGEGKTli~~-l~a~~~AL~G------------------~~V~vvT~NdyL 130 (266)
T PF07517_consen 77 RPYDVQLLGALAL--H-----KGRLAEMKTGEGKTLIAA-LPAALNALQG------------------KGVHVVTSNDYL 130 (266)
T ss_dssp ---HHHHHHHHHH--H-----TTSEEEESTTSHHHHHHH-HHHHHHHTTS------------------S-EEEEESSHHH
T ss_pred cccHHHHhhhhhc--c-----cceeEEecCCCCcHHHHH-HHHHHHHHhc------------------CCcEEEeccHHH
Confidence 3455565555332 2 577898999999999984 3333333322 477888886554
Q ss_pred ----HHHHHHHHHhcCCCCcEEEEEeCCCCcCCcccccCCCEEEechhhhHHHhh
Q 003502 201 ----TQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYR 251 (815)
Q Consensus 201 ----~qW~~Ei~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~vvi~ty~~l~~~~~ 251 (815)
.+|...+-++++ +.+-...+.......+..-..||+-+|-+.+.-++-
T Consensus 131 A~RD~~~~~~~y~~LG---lsv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~L 182 (266)
T PF07517_consen 131 AKRDAEEMRPFYEFLG---LSVGIITSDMSSEERREAYAADIVYGTNSEFGFDYL 182 (266)
T ss_dssp HHHHHHHHHHHHHHTT-----EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHH
T ss_pred hhccHHHHHHHHHHhh---hccccCccccCHHHHHHHHhCcccccccchhhHHHH
Confidence 578777777774 777776665543323334567888888888776543
No 169
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.58 E-value=0.00067 Score=77.04 Aligned_cols=99 Identities=7% Similarity=0.086 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhC-CCcEEEEecCCCHHHHHHHHHhhcCC--CCceEEEEec
Q 003502 645 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS-GVNCVQLVGSMSIPARDAAINRFTED--PDCKIFLMSL 721 (815)
Q Consensus 645 Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~-g~~~~~i~G~~~~~~R~~~i~~F~~~--~~~~vlL~st 721 (815)
-...+.+.|..++....|.-.+.||.|..+-. +...|... .++ +.+.|..+ .+..++++|++. .+.+-+|+.|
T Consensus 454 ~~~~~~~~~~~~~~~~~G~~lvLfTS~~~~~~-~~~~l~~~l~~~-~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt 529 (636)
T TIGR03117 454 WLENVSLSTAAILRKAQGGTLVLTTAFSHISA-IGQLVELGIPAE-IVIQSEKN--RLASAEQQFLALYANGIQPVLIAA 529 (636)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEechHHHHHH-HHHHHHhhcCCC-EEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeC
Confidence 34567777777777777777777887766544 44445432 233 34556542 467799999873 1223355588
Q ss_pred CCCcccccc--------c--ccCEEEEeCCCCCcch
Q 003502 722 KAGGVALNL--------T--VASHVFLMDPWWNPAV 747 (815)
Q Consensus 722 ~~g~~GlNL--------~--~a~~vI~~d~~wnp~~ 747 (815)
....+|+|+ + .++.|||.-+|+-|..
T Consensus 530 ~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~~d 565 (636)
T TIGR03117 530 GGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGLNR 565 (636)
T ss_pred CccccccccCCccCCCCCCCcccEEEEEeCCCCcCC
Confidence 999999999 2 5788999888877743
No 170
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.50 E-value=0.00029 Score=76.62 Aligned_cols=80 Identities=23% Similarity=0.275 Sum_probs=63.6
Q ss_pred cchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHH-
Q 003502 121 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA- 199 (815)
Q Consensus 121 ~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~l- 199 (815)
.|-..|..++...+.+ .=.||--++|+|||++..+++.++.+.+. +|+||++|.++
T Consensus 410 kLN~SQ~~AV~~VL~r-----plsLIQGPPGTGKTvtsa~IVyhl~~~~~------------------~~VLvcApSNiA 466 (935)
T KOG1802|consen 410 KLNASQSNAVKHVLQR-----PLSLIQGPPGTGKTVTSATIVYHLARQHA------------------GPVLVCAPSNIA 466 (935)
T ss_pred hhchHHHHHHHHHHcC-----CceeeecCCCCCceehhHHHHHHHHHhcC------------------CceEEEcccchh
Confidence 4677999999887776 45688889999999999777777665432 69999999776
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEeCCCCc
Q 003502 200 VTQWVSEINRFTSVGSTKVLIYHGSNRE 227 (815)
Q Consensus 200 l~qW~~Ei~~~~~~~~~~v~~~~g~~~~ 227 (815)
+.|-..-|++- .++|+......++
T Consensus 467 VDqLaeKIh~t----gLKVvRl~aksRE 490 (935)
T KOG1802|consen 467 VDQLAEKIHKT----GLKVVRLCAKSRE 490 (935)
T ss_pred HHHHHHHHHhc----CceEeeeehhhhh
Confidence 69999999876 5888887776554
No 171
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.45 E-value=0.00093 Score=67.62 Aligned_cols=73 Identities=25% Similarity=0.265 Sum_probs=45.2
Q ss_pred cchHHHHHHHHHHHHHhhccCCC-CeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcCh-H
Q 003502 121 PLLRYQKEWLAWALKQEESAIRG-GILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-A 198 (815)
Q Consensus 121 ~L~~yQ~~~~~~~~~~~~~~~~g-~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-~ 198 (815)
.|-+.|..++..++.. .+ +++.-.+|+|||.+..+++........ .......+++||++|. .
T Consensus 1 ~ln~~Q~~Ai~~~~~~-----~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~-----------~~~~~~~~~il~~~~sN~ 64 (236)
T PF13086_consen 1 KLNESQREAIQSALSS-----NGITLIQGPPGTGKTTTLASIIAQLLQRFK-----------SRSADRGKKILVVSPSNA 64 (236)
T ss_dssp ---HHHHHHHHHHCTS-----SE-EEEE-STTSSHHHHHHHHHHHH------------------HCCCSS-EEEEESSHH
T ss_pred CCCHHHHHHHHHHHcC-----CCCEEEECCCCCChHHHHHHHHHHhccchh-----------hhhhhccccceeecCCch
Confidence 3678999999877665 44 788889999999877777666621000 0000123699999995 4
Q ss_pred HHHHHHHHHHH
Q 003502 199 AVTQWVSEINR 209 (815)
Q Consensus 199 ll~qW~~Ei~~ 209 (815)
.+.+-...+.+
T Consensus 65 avd~~~~~l~~ 75 (236)
T PF13086_consen 65 AVDNILERLKK 75 (236)
T ss_dssp HHHHHHHHHHC
T ss_pred hHHHHHHHHHh
Confidence 56777777766
No 172
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=97.44 E-value=0.046 Score=64.62 Aligned_cols=47 Identities=15% Similarity=0.109 Sum_probs=34.3
Q ss_pred CceEEEEecCCCcccccccccCEEEEeCCCCCcchHHHHhHhhhcCCCCC
Q 003502 713 DCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYK 762 (815)
Q Consensus 713 ~~~vlL~st~~g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~ 762 (815)
+..+++++|.+...|+|+- .+.+| -+|. .....+|+.||+.|-|+..
T Consensus 837 ~~~~i~v~Tqv~E~g~D~d-fd~~~-~~~~-~~~sliQ~aGR~~R~~~~~ 883 (1110)
T TIGR02562 837 NHLFIVLATPVEEVGRDHD-YDWAI-ADPS-SMRSIIQLAGRVNRHRLEK 883 (1110)
T ss_pred CCCeEEEEeeeEEEEeccc-CCeee-eccC-cHHHHHHHhhcccccccCC
Confidence 3556778999999999986 33333 3332 3467899999999999854
No 173
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=97.22 E-value=0.0002 Score=49.74 Aligned_cols=40 Identities=43% Similarity=0.961 Sum_probs=29.7
Q ss_pred cCcccccCCCCccccCCchhhhhhHhhhccccCC--CCCCCC
Q 003502 561 CGLCNDLADDPVVTNCGHAFCKACLFDSSASKFV--AKCPTC 600 (815)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~--~~~~~~ 600 (815)
|.+|.++..+|+.+.|||.||..|+......... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 6789999999999999999999999887665443 477765
No 174
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.10 E-value=0.00037 Score=65.24 Aligned_cols=50 Identities=36% Similarity=0.799 Sum_probs=41.9
Q ss_pred hhhcCcccccCCCCccccCCchhhhhhHhhhccc--------------cCCCCCCCCCCCcccc
Q 003502 558 QQVCGLCNDLADDPVVTNCGHAFCKACLFDSSAS--------------KFVAKCPTCSIPLTVD 607 (815)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~--------------~~~~~~~~~~~~~~~~ 607 (815)
...|.+|.+...+++++.|||.||..|+..+... .....||.|+..+...
T Consensus 18 ~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 18 DFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred ccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 4679999999999999999999999999886531 2357899999988653
No 175
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.00023 Score=67.67 Aligned_cols=56 Identities=38% Similarity=0.809 Sum_probs=47.1
Q ss_pred hhhhhhcCcccccCCCCccccCCchhhhhhHhhhccccC-CCCCCCCCCCccccccc
Q 003502 555 EHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKF-VAKCPTCSIPLTVDFTA 610 (815)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~-~~~~~~~~~~~~~~~~~ 610 (815)
+.-...|.+|.+.+.+|+|+.|||.||=.|+.++..... ..-||+|+..++.+...
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vv 100 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVV 100 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEE
Confidence 344567999999999999999999999999999998665 56669999988776544
No 176
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.00 E-value=0.00058 Score=66.07 Aligned_cols=44 Identities=30% Similarity=0.161 Sum_probs=30.7
Q ss_pred cchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccc
Q 003502 121 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIR 169 (815)
Q Consensus 121 ~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~ 169 (815)
++-++|...+.-++.. .-.++--..|+|||+.|++.++.....+
T Consensus 4 p~~~~Q~~~~~al~~~-----~~v~~~G~AGTGKT~LA~a~Al~~v~~g 47 (205)
T PF02562_consen 4 PKNEEQKFALDALLNN-----DLVIVNGPAGTGKTFLALAAALELVKEG 47 (205)
T ss_dssp --SHHHHHHHHHHHH------SEEEEE--TTSSTTHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHhC-----CeEEEECCCCCcHHHHHHHHHHHHHHhC
Confidence 3557899888877733 4567777899999999999888776553
No 177
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.93 E-value=0.0068 Score=72.28 Aligned_cols=114 Identities=14% Similarity=0.071 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCc
Q 003502 646 IEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGG 725 (815)
Q Consensus 646 l~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~ 725 (815)
...+.+.|..+. .. +.+++|+..+..++..+...|....++. ...|... .|.+++++|+++ +-.||| .+....
T Consensus 633 ~~~~~~~i~~~~-~~-~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~-~~~vLl-G~~sFw 705 (820)
T PRK07246 633 AEEIAKRLEELK-QL-QQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRG-EQQILL-GLGSFW 705 (820)
T ss_pred HHHHHHHHHHHH-hc-CCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcC-CCeEEE-ecchhh
Confidence 346667776655 33 3477777777777788888887655444 4556432 356799999875 444555 669999
Q ss_pred ccccccc--cCEEEEeCCCCC-c-----------------------------chHHHHhHhhhcCCCCCcEEE
Q 003502 726 VALNLTV--ASHVFLMDPWWN-P-----------------------------AVEQQAQDRIHRIGQYKPIRI 766 (815)
Q Consensus 726 ~GlNL~~--a~~vI~~d~~wn-p-----------------------------~~~~QaigR~~R~GQ~~~V~v 766 (815)
||+|++. +..||+.-+|+- | ....|++||..|--..+.|.+
T Consensus 706 EGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ 778 (820)
T PRK07246 706 EGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVL 778 (820)
T ss_pred CCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEE
Confidence 9999973 455666554422 2 335688888888766666533
No 178
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=96.83 E-value=0.00059 Score=46.73 Aligned_cols=38 Identities=50% Similarity=1.122 Sum_probs=31.1
Q ss_pred cCcccccCCCC-ccccCCchhhhhhHhhhccccCCCCCCCC
Q 003502 561 CGLCNDLADDP-VVTNCGHAFCKACLFDSSASKFVAKCPTC 600 (815)
Q Consensus 561 ~~~~~~~~~~~-~~~~~~~~~c~~c~~~~~~~~~~~~~~~~ 600 (815)
|.+|.+...++ +++.|||.||..|+.++... ...||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC--cCCCcCC
Confidence 67888888888 68999999999999998877 4788876
No 179
>PRK10536 hypothetical protein; Provisional
Probab=96.82 E-value=0.0011 Score=65.88 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=32.1
Q ss_pred eEEEeecceeccCCCchHHHHHHhhhcCcEEEeeCCCCCCch
Q 003502 337 ERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRV 378 (815)
Q Consensus 337 ~~vIvDEaH~~kn~~s~~~~~~~~l~~~~r~~LTgTPi~n~~ 378 (815)
++|||||||++.- ......+.++....+++++|-|-|..+
T Consensus 178 ~~vIvDEaqn~~~--~~~k~~ltR~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 178 AVVILDEAQNVTA--AQMKMFLTRLGENVTVIVNGDITQCDL 217 (262)
T ss_pred CEEEEechhcCCH--HHHHHHHhhcCCCCEEEEeCChhhccC
Confidence 6899999999854 455566677889999999999977543
No 180
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=96.71 E-value=0.0046 Score=67.51 Aligned_cols=68 Identities=22% Similarity=0.260 Sum_probs=51.3
Q ss_pred ccccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcCh
Q 003502 118 LITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV 197 (815)
Q Consensus 118 ~~~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~ 197 (815)
+...|-+.|+.++.++...- .=.++--++|+|||.+.+-+|....... +++||.+|.
T Consensus 182 ~~~~ln~SQk~Av~~~~~~k----~l~~I~GPPGTGKT~TlvEiI~qlvk~~-------------------k~VLVcaPS 238 (649)
T KOG1803|consen 182 FNKNLNSSQKAAVSFAINNK----DLLIIHGPPGTGKTRTLVEIISQLVKQK-------------------KRVLVCAPS 238 (649)
T ss_pred CCccccHHHHHHHHHHhccC----CceEeeCCCCCCceeeHHHHHHHHHHcC-------------------CeEEEEcCc
Confidence 45668899999999876652 1245666999999999988887776543 589999997
Q ss_pred HH-HHHHHHHHH
Q 003502 198 AA-VTQWVSEIN 208 (815)
Q Consensus 198 ~l-l~qW~~Ei~ 208 (815)
++ +.+-.+-+.
T Consensus 239 n~AVdNiverl~ 250 (649)
T KOG1803|consen 239 NVAVDNIVERLT 250 (649)
T ss_pred hHHHHHHHHHhc
Confidence 76 688777654
No 181
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.68 E-value=0.005 Score=58.38 Aligned_cols=99 Identities=16% Similarity=0.205 Sum_probs=62.2
Q ss_pred CceEEEEccChhHHHHHHHHHHhCC----CcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecC--CCccccccc--cc
Q 003502 662 SAKGIVFSQFTSFLDLINYSLHKSG----VNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK--AGGVALNLT--VA 733 (815)
Q Consensus 662 ~~KvIIFs~~~~~~~~l~~~L~~~g----~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~--~g~~GlNL~--~a 733 (815)
+.++|||..+-..++.+...+...+ +.+. ..+ ...+..+++.|.++.+ - +|+++. ...||+|+. .|
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~-~q~---~~~~~~~l~~~~~~~~-~-il~~v~~g~~~EGiD~~~~~~ 82 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVF-VQG---SKSRDELLEEFKRGEG-A-ILLAVAGGSFSEGIDFPGDLL 82 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEE-EST---CCHHHHHHHHHCCSSS-E-EEEEETTSCCGSSS--ECESE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceee-ecC---cchHHHHHHHHHhccC-e-EEEEEecccEEEeecCCCchh
Confidence 3689999999999999999888653 3322 222 3578899999998633 3 444666 889999999 46
Q ss_pred CEEEEeCCCCCc------------------------------chHHHHhHhhhcCCCCCcEEE
Q 003502 734 SHVFLMDPWWNP------------------------------AVEQQAQDRIHRIGQYKPIRI 766 (815)
Q Consensus 734 ~~vI~~d~~wnp------------------------------~~~~QaigR~~R~GQ~~~V~v 766 (815)
..||+.-+|+-+ ....|++||+.|-.+..-+.+
T Consensus 83 r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~ 145 (167)
T PF13307_consen 83 RAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVII 145 (167)
T ss_dssp EEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEE
T ss_pred heeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEE
Confidence 678888777532 234588999998776554443
No 182
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.67 E-value=0.016 Score=70.43 Aligned_cols=118 Identities=17% Similarity=0.150 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCC--cEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCC
Q 003502 646 IEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGV--NCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKA 723 (815)
Q Consensus 646 l~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~--~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~ 723 (815)
...+.+.|..+....++ ++|||..+..++..+.+.|..... .+..+.-+++...|.+++++|+++ +-.|+| .+..
T Consensus 737 ~~~la~~i~~l~~~~~g-~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~-~~~iLl-G~~s 813 (928)
T PRK08074 737 IEEVAAYIAKIAKATKG-RMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQF-DKAILL-GTSS 813 (928)
T ss_pred HHHHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhc-CCeEEE-ecCc
Confidence 35677777776655544 666666667777778877765322 122222222224578899999975 334555 6799
Q ss_pred Ccccccccc--cCEEEEeCCCC-Cc-----------------------------chHHHHhHhhhcCCCCCcEEE
Q 003502 724 GGVALNLTV--ASHVFLMDPWW-NP-----------------------------AVEQQAQDRIHRIGQYKPIRI 766 (815)
Q Consensus 724 g~~GlNL~~--a~~vI~~d~~w-np-----------------------------~~~~QaigR~~R~GQ~~~V~v 766 (815)
..||+|+++ +..||+.-.|+ +| ....|++||+.|-.+.+.|.+
T Consensus 814 FwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ 888 (928)
T PRK08074 814 FWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVF 888 (928)
T ss_pred ccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEE
Confidence 999999995 47788887666 33 223688889888877766533
No 183
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.65 E-value=0.0059 Score=70.46 Aligned_cols=76 Identities=14% Similarity=0.140 Sum_probs=56.4
Q ss_pred CCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcC-hHHHHHHHHHHHHhcCCCCcEEEEEeCCCCcC
Q 003502 150 MGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VAAVTQWVSEINRFTSVGSTKVLIYHGSNRER 228 (815)
Q Consensus 150 ~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P-~~ll~qW~~Ei~~~~~~~~~~v~~~~g~~~~~ 228 (815)
.|+|||-.-+.++......+ +.+||++| -++..|+.+-|...++ ...+.++|+.....
T Consensus 169 ~GSGKTevyl~~i~~~l~~G-------------------k~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~ 227 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAG-------------------RGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPA 227 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcC-------------------CeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHH
Confidence 59999999988888777543 47899999 5778999999999886 34577788764332
Q ss_pred Cc-c-----cccCCCEEEechhhh
Q 003502 229 SA-K-----QFSEFDFVITTYSII 246 (815)
Q Consensus 229 ~~-~-----~~~~~~vvi~ty~~l 246 (815)
.. . ..+...|||-|.+.+
T Consensus 228 ~R~~~w~~~~~G~~~IViGtRSAv 251 (665)
T PRK14873 228 DRYRRWLAVLRGQARVVVGTRSAV 251 (665)
T ss_pred HHHHHHHHHhCCCCcEEEEcceeE
Confidence 11 1 124567888888865
No 184
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.62 E-value=0.0011 Score=46.06 Aligned_cols=40 Identities=40% Similarity=0.984 Sum_probs=35.2
Q ss_pred cCcccccCCCCc-cccCCchhhhhhHhhhccccCCCCCCCC
Q 003502 561 CGLCNDLADDPV-VTNCGHAFCKACLFDSSASKFVAKCPTC 600 (815)
Q Consensus 561 ~~~~~~~~~~~~-~~~~~~~~c~~c~~~~~~~~~~~~~~~~ 600 (815)
|.+|.+....+. +..|||.||..|+..+........||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 678888888888 9999999999999999887777788876
No 185
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.59 E-value=0.014 Score=62.83 Aligned_cols=115 Identities=13% Similarity=0.070 Sum_probs=86.9
Q ss_pred cchHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHH----hCCC----cEEEEecCCCHHHHHHHHHhhcCCCC
Q 003502 642 SSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLH----KSGV----NCVQLVGSMSIPARDAAINRFTEDPD 713 (815)
Q Consensus 642 ~s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~----~~g~----~~~~i~G~~~~~~R~~~i~~F~~~~~ 713 (815)
.+.|+.....++.+++..+ -++|-||..+...+++-...+ .-|- .+..+.|+-+.++|.++-...-.| .
T Consensus 507 ~~~~i~E~s~~~~~~i~~~--~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G-~ 583 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHG--LRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGG-K 583 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcC--CcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCC-e
Confidence 4667777777777776544 899999999987666543333 2221 123467888888888775554444 5
Q ss_pred ceEEEEecCCCcccccccccCEEEEeCCCCCcchHHHHhHhhhcCCC
Q 003502 714 CKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQ 760 (815)
Q Consensus 714 ~~vlL~st~~g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ 760 (815)
..- +++|.+...|||+-.-+.|+.+-.|.+.+.+.|-.|||+|-..
T Consensus 584 L~g-iIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk 629 (1034)
T KOG4150|consen 584 LCG-IIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNK 629 (1034)
T ss_pred eeE-EEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCC
Confidence 544 4489999999999999999999999999999999999999654
No 186
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=96.51 E-value=0.018 Score=67.90 Aligned_cols=117 Identities=13% Similarity=0.123 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCc-EEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCC
Q 003502 645 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVN-CVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKA 723 (815)
Q Consensus 645 Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~-~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~ 723 (815)
=+..+...|..++...++ ++|||..+-.++..+...+...... .+...|.. .+..++++|.++.+. .+++.+..
T Consensus 463 ~~~~~~~~i~~~~~~~~~-~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~-~~lv~~gs 537 (654)
T COG1199 463 LLAKLAAYLREILKASPG-GVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEG-LILVGGGS 537 (654)
T ss_pred HHHHHHHHHHHHHhhcCC-CEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCC-eEEEeecc
Confidence 355666677777666665 8888888888888898888876653 34455554 455899999986443 56668899
Q ss_pred Ccccccccc--cCEEEEeCCCCCc------------------------------chHHHHhHhhhcCCCCCcEEE
Q 003502 724 GGVALNLTV--ASHVFLMDPWWNP------------------------------AVEQQAQDRIHRIGQYKPIRI 766 (815)
Q Consensus 724 g~~GlNL~~--a~~vI~~d~~wnp------------------------------~~~~QaigR~~R~GQ~~~V~v 766 (815)
..||+|+++ +..||+.-.|+-+ ....|++||+.|--+.+.|.|
T Consensus 538 f~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~iv 612 (654)
T COG1199 538 FWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIV 612 (654)
T ss_pred ccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEE
Confidence 999999994 5678887766542 456899999999666666555
No 187
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.44 E-value=0.023 Score=64.78 Aligned_cols=98 Identities=17% Similarity=0.173 Sum_probs=60.6
Q ss_pred CCCcccccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHH----HHHHhcccccc----ccCC---CCCCCC--
Q 003502 114 DPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAI----ALVLAKREIRG----TIGE---LDASSS-- 180 (815)
Q Consensus 114 ~p~~~~~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai----~li~~~~~~~~----~~~~---~~~~~~-- 180 (815)
.|-.+-..+||-|+.-...++..+.+.. +|+|-.++|+|||+.-| |+..++..... .+.. .+..++
T Consensus 14 v~V~fP~qpY~~Q~a~M~rvl~~L~~~q-~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~ 92 (945)
T KOG1132|consen 14 VPVEFPFQPYPTQLAFMTRVLSCLDRKQ-NGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDS 92 (945)
T ss_pred ceeeccCCcchHHHHHHHHHHHHHHHhh-hhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccC
Confidence 3445556689999988888888877775 79999999999999854 34444331100 0000 000000
Q ss_pred ---CC--CCcc----CCccEEEEcChHH--HHHHHHHHHHhcC
Q 003502 181 ---SS--TGLL----GIKATLVICPVAA--VTQWVSEINRFTS 212 (815)
Q Consensus 181 ---~~--~~~~----~~~~~LIV~P~~l--l~qW~~Ei~~~~~ 212 (815)
.+ .+.+ -..|.++.+...- +.|-.+|+.+..-
T Consensus 93 ~g~~s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y 135 (945)
T KOG1132|consen 93 GGEKSEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGY 135 (945)
T ss_pred CCCchhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcCC
Confidence 00 1111 2368899998544 8999999998654
No 188
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.0022 Score=63.19 Aligned_cols=50 Identities=30% Similarity=0.772 Sum_probs=42.6
Q ss_pred hhhhhhcCcccccCCCCccccCCchhhhhhHhhhccccCCCCCCCCCCCccc
Q 003502 555 EHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTV 606 (815)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~ 606 (815)
.+....|.+|.+...+|..+.|||.||-.|+..+...... ||.||..+..
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~e--CPlCR~~~~p 285 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAE--CPLCREKFQP 285 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccC--CCcccccCCC
Confidence 3445789999999999999999999999999988765544 9999987653
No 189
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=96.30 E-value=0.003 Score=48.78 Aligned_cols=44 Identities=23% Similarity=0.424 Sum_probs=39.4
Q ss_pred hcCcccccCCCCccccCCchhhhhhHhhhccccCCCCCCCCCCCcc
Q 003502 560 VCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 605 (815)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~ 605 (815)
.|.+|.+...+|++..|||.||+.|+..+... ...||.|+.++.
T Consensus 3 ~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~--~~~cP~~~~~~~ 46 (63)
T smart00504 3 LCPISLEVMKDPVILPSGQTYERRAIEKWLLS--HGTDPVTGQPLT 46 (63)
T ss_pred CCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH--CCCCCCCcCCCC
Confidence 58999999999999999999999999998876 678999987764
No 190
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.29 E-value=0.0078 Score=54.50 Aligned_cols=35 Identities=31% Similarity=0.410 Sum_probs=26.7
Q ss_pred eEEEeecceeccCCCchHHHHHHhh--hcCcEEEeeCCC
Q 003502 337 ERIILDEAHFIKDRRSNTAKAVLAL--ESSYKWALSGTP 373 (815)
Q Consensus 337 ~~vIvDEaH~~kn~~s~~~~~~~~l--~~~~r~~LTgTP 373 (815)
.+|||||+|++. .......++.+ .....++|+|||
T Consensus 89 ~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 689999999984 24555566665 566679999999
No 191
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.22 E-value=0.031 Score=68.04 Aligned_cols=87 Identities=8% Similarity=0.110 Sum_probs=53.8
Q ss_pred ccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHH
Q 003502 120 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA 199 (815)
Q Consensus 120 ~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~l 199 (815)
...||-|.+....+...+..+ ...++=..+|+|||+.-+.-+....... .++++|-++...
T Consensus 256 ~e~R~~Q~~m~~~v~~~l~~~-~~~~iEA~TGtGKTlaYLlpa~~~a~~~------------------~~~vvIsT~T~~ 316 (928)
T PRK08074 256 YEKREGQQEMMKEVYTALRDS-EHALIEAGTGTGKSLAYLLPAAYFAKKK------------------EEPVVISTYTIQ 316 (928)
T ss_pred CcCCHHHHHHHHHHHHHHhcC-CCEEEECCCCCchhHHHHHHHHHHhhcc------------------CCeEEEEcCCHH
Confidence 367899999887777766654 3455556899999997643333222111 157888888655
Q ss_pred H-HHH-HHH---HHHhcCCCCcEEEEEeCCCC
Q 003502 200 V-TQW-VSE---INRFTSVGSTKVLIYHGSNR 226 (815)
Q Consensus 200 l-~qW-~~E---i~~~~~~~~~~v~~~~g~~~ 226 (815)
+ .|- .++ +.+.++. .+++.+.-|...
T Consensus 317 LQ~Ql~~kDiP~L~~~~~~-~~~~~~lKGr~n 347 (928)
T PRK08074 317 LQQQLLEKDIPLLQKIFPF-PVEAALLKGRSH 347 (928)
T ss_pred HHHHHHHhhHHHHHHHcCC-CceEEEEEcccc
Confidence 5 553 333 4455542 567777776543
No 192
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.0025 Score=67.88 Aligned_cols=49 Identities=35% Similarity=0.789 Sum_probs=42.8
Q ss_pred hhhcCcccccCCCCccccCCchhhhhhHhhhccc---cCCCCCCCCCCCccc
Q 003502 558 QQVCGLCNDLADDPVVTNCGHAFCKACLFDSSAS---KFVAKCPTCSIPLTV 606 (815)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~---~~~~~~~~~~~~~~~ 606 (815)
...|.+|...+..+..+.|||.||-.|+.++... .....||.|+..+..
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 3569999999999999999999999999997653 468899999987765
No 193
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=96.03 E-value=0.0032 Score=45.89 Aligned_cols=45 Identities=33% Similarity=0.790 Sum_probs=38.5
Q ss_pred hhcCcccccCCCCccccCCch-hhhhhHhhhccccCCCCCCCCCCCcc
Q 003502 559 QVCGLCNDLADDPVVTNCGHA-FCKACLFDSSASKFVAKCPTCSIPLT 605 (815)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~-~c~~c~~~~~~~~~~~~~~~~~~~~~ 605 (815)
..|.+|.+...+.++..|||. +|..|...... ....||.|+.+++
T Consensus 3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~--~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 3 EECPICFENPRDVVLLPCGHLCFCEECAERLLK--RKKKCPICRQPIE 48 (50)
T ss_dssp SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH--TTSBBTTTTBB-S
T ss_pred CCCccCCccCCceEEeCCCChHHHHHHhHHhcc--cCCCCCcCChhhc
Confidence 468899999999999999999 99999988877 7889999998764
No 194
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.01 E-value=0.004 Score=66.11 Aligned_cols=47 Identities=34% Similarity=0.814 Sum_probs=40.5
Q ss_pred hhhcCcccccCCCCccccCCchhhhhhHhhhccccCCCCCCCCCCCccc
Q 003502 558 QQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTV 606 (815)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~ 606 (815)
...|.+|.+....+++..|||.||..|+..+... ...||.|+..+..
T Consensus 26 ~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~--~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 26 SLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN--QPKCPLCRAEDQE 72 (397)
T ss_pred ccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC--CCCCCCCCCcccc
Confidence 4579999999999999999999999999887654 3589999987653
No 195
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.92 E-value=0.026 Score=60.91 Aligned_cols=48 Identities=19% Similarity=0.331 Sum_probs=31.0
Q ss_pred eeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHHHHH-HHHHHHH
Q 003502 145 ILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQ-WVSEINR 209 (815)
Q Consensus 145 ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~ll~q-W~~Ei~~ 209 (815)
|+--..|+|||+.++.++..+.... .....+++|+...+.. -...+..
T Consensus 5 ~I~G~aGTGKTvla~~l~~~l~~~~-----------------~~~~~~~l~~n~~l~~~l~~~l~~ 53 (352)
T PF09848_consen 5 LITGGAGTGKTVLALNLAKELQNSE-----------------EGKKVLYLCGNHPLRNKLREQLAK 53 (352)
T ss_pred EEEecCCcCHHHHHHHHHHHhhccc-----------------cCCceEEEEecchHHHHHHHHHhh
Confidence 4445789999999999888771111 1246788888665544 4445543
No 196
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.91 E-value=0.066 Score=62.09 Aligned_cols=78 Identities=21% Similarity=0.194 Sum_probs=55.8
Q ss_pred ccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHH
Q 003502 120 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA 199 (815)
Q Consensus 120 ~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~l 199 (815)
..|-+.|+.++..++.. . ...|+--.+|+|||.++++++......+ .++||++|.+.
T Consensus 156 ~~ln~~Q~~Av~~~l~~---~-~~~lI~GpPGTGKT~t~~~ii~~~~~~g-------------------~~VLv~a~sn~ 212 (637)
T TIGR00376 156 PNLNESQKEAVSFALSS---K-DLFLIHGPPGTGKTRTLVELIRQLVKRG-------------------LRVLVTAPSNI 212 (637)
T ss_pred CCCCHHHHHHHHHHhcC---C-CeEEEEcCCCCCHHHHHHHHHHHHHHcC-------------------CCEEEEcCcHH
Confidence 56889999999886542 1 2456777899999999988887765422 38999999665
Q ss_pred -HHHHHHHHHHhcCCCCcEEEEEeCC
Q 003502 200 -VTQWVSEINRFTSVGSTKVLIYHGS 224 (815)
Q Consensus 200 -l~qW~~Ei~~~~~~~~~~v~~~~g~ 224 (815)
+.+....+... ..+++.+...
T Consensus 213 Avd~l~e~l~~~----~~~vvRlg~~ 234 (637)
T TIGR00376 213 AVDNLLERLALC----DQKIVRLGHP 234 (637)
T ss_pred HHHHHHHHHHhC----CCcEEEeCCc
Confidence 67888877654 3455554443
No 197
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=95.84 E-value=0.048 Score=62.92 Aligned_cols=68 Identities=25% Similarity=0.217 Sum_probs=49.8
Q ss_pred ccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHH
Q 003502 120 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA 199 (815)
Q Consensus 120 ~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~l 199 (815)
..|-.-|++|+..++.... ..-|++ =+|+|||-+...++..+...+ +.+|+.+=.+.
T Consensus 668 ~~LN~dQr~A~~k~L~aed---y~LI~G-MPGTGKTTtI~~LIkiL~~~g-------------------kkVLLtsyThs 724 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAAED---YALILG-MPGTGKTTTISLLIKILVALG-------------------KKVLLTSYTHS 724 (1100)
T ss_pred hhcCHHHHHHHHHHHhccc---hheeec-CCCCCchhhHHHHHHHHHHcC-------------------CeEEEEehhhH
Confidence 3788899999988766543 234566 479999999888888776543 58888888655
Q ss_pred -HHHHHHHHHHh
Q 003502 200 -VTQWVSEINRF 210 (815)
Q Consensus 200 -l~qW~~Ei~~~ 210 (815)
+.+----+..+
T Consensus 725 AVDNILiKL~~~ 736 (1100)
T KOG1805|consen 725 AVDNILIKLKGF 736 (1100)
T ss_pred HHHHHHHHHhcc
Confidence 67776666654
No 198
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=95.78 E-value=0.0047 Score=60.16 Aligned_cols=46 Identities=28% Similarity=0.654 Sum_probs=39.7
Q ss_pred hhhcCcccccCCCCccccCCchhhhhhHhhhccccCCCCCCCCCCCcc
Q 003502 558 QQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 605 (815)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~ 605 (815)
..-|.+|.+....|+++.|||.||.-|+..++. ....||.|+....
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~--~qp~CP~Cr~~~~ 70 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGHTFCSLCIRRHLG--TQPFCPVCREDPC 70 (391)
T ss_pred HHHhhhhhheeecceecccccchhHHHHHHHhc--CCCCCccccccHH
Confidence 456999999999999999999999999988775 4578999998654
No 199
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.0052 Score=55.90 Aligned_cols=46 Identities=41% Similarity=0.936 Sum_probs=35.5
Q ss_pred hhhcCcccccCCC--CccccCCchhhhhhHhhhccccCCCCCCCCCCCcc
Q 003502 558 QQVCGLCNDLADD--PVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 605 (815)
Q Consensus 558 ~~~~~~~~~~~~~--~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~ 605 (815)
...|.+|.+.... ++-..|||.||+.|+...+. ....||.|+..++
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk--~~~~CP~C~kkIt 178 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALK--NTNKCPTCRKKIT 178 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHH--hCCCCCCcccccc
Confidence 3679999876643 45589999999999977654 5678999996554
No 200
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=95.60 E-value=2 Score=51.73 Aligned_cols=84 Identities=17% Similarity=0.253 Sum_probs=56.7
Q ss_pred CCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHHH-----HHHHHHHHHhcCCCC
Q 003502 141 IRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAV-----TQWVSEINRFTSVGS 215 (815)
Q Consensus 141 ~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~ll-----~qW~~Ei~~~~~~~~ 215 (815)
....+++...|+|||+.|=-.+.. .. ..+++.-++|...+ .-|..-|.+.. .
T Consensus 1159 nd~v~vga~~gsgkt~~ae~a~l~--~~------------------~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~---G 1215 (1674)
T KOG0951|consen 1159 NDNVLVGAPNGSGKTACAELALLR--PD------------------TIGRAVYIAPLEEIADEQYRDWEKKFSKLL---G 1215 (1674)
T ss_pred cceEEEecCCCCchhHHHHHHhcC--Cc------------------cceEEEEecchHHHHHHHHHHHHHhhcccc---C
Confidence 357899999999999988332222 11 23688999997654 45666666553 4
Q ss_pred cEEEEEeCCCCcCCcccccCCCEEEechhhhHH
Q 003502 216 TKVLIYHGSNRERSAKQFSEFDFVITTYSIIEA 248 (815)
Q Consensus 216 ~~v~~~~g~~~~~~~~~~~~~~vvi~ty~~l~~ 248 (815)
+.+....|.. ......+...+|+|+|++....
T Consensus 1216 ~~~~~l~ge~-s~~lkl~~~~~vii~tpe~~d~ 1247 (1674)
T KOG0951|consen 1216 LRIVKLTGET-SLDLKLLQKGQVIISTPEQWDL 1247 (1674)
T ss_pred ceEEecCCcc-ccchHHhhhcceEEechhHHHH
Confidence 5555555543 3445556788999999998654
No 201
>PHA02929 N1R/p28-like protein; Provisional
Probab=95.58 E-value=0.0079 Score=59.27 Aligned_cols=46 Identities=28% Similarity=0.765 Sum_probs=36.8
Q ss_pred hhhcCcccccCCC--------CccccCCchhhhhhHhhhccccCCCCCCCCCCCcc
Q 003502 558 QQVCGLCNDLADD--------PVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 605 (815)
Q Consensus 558 ~~~~~~~~~~~~~--------~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~ 605 (815)
...|.+|.+...+ +++..|+|.||..|+..+.. ....||.|+.++.
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~--~~~tCPlCR~~~~ 227 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK--EKNTCPVCRTPFI 227 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh--cCCCCCCCCCEee
Confidence 4679999986433 35779999999999988765 4679999998765
No 202
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.0047 Score=69.39 Aligned_cols=48 Identities=33% Similarity=0.884 Sum_probs=40.8
Q ss_pred hhcCcccccCCCCccccCCchhhhhhHhhhccccCCCCCCCCCCCcccc
Q 003502 559 QVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVD 607 (815)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~ 607 (815)
-.|+.|..-+.+.+++.|+|.||..|+....... .-+||.|..+|+..
T Consensus 644 LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etR-qRKCP~Cn~aFgan 691 (698)
T KOG0978|consen 644 LKCSVCNTRWKDAVITKCGHVFCEECVQTRYETR-QRKCPKCNAAFGAN 691 (698)
T ss_pred eeCCCccCchhhHHHHhcchHHHHHHHHHHHHHh-cCCCCCCCCCCCcc
Confidence 3499999999999999999999999997765544 56899999998754
No 203
>PHA02926 zinc finger-like protein; Provisional
Probab=95.54 E-value=0.0084 Score=56.78 Aligned_cols=48 Identities=23% Similarity=0.698 Sum_probs=38.0
Q ss_pred hhhcCcccccCC---------CCccccCCchhhhhhHhhhccccC----CCCCCCCCCCcc
Q 003502 558 QQVCGLCNDLAD---------DPVVTNCGHAFCKACLFDSSASKF----VAKCPTCSIPLT 605 (815)
Q Consensus 558 ~~~~~~~~~~~~---------~~~~~~~~~~~c~~c~~~~~~~~~----~~~~~~~~~~~~ 605 (815)
...|.+|.+..- -+++..|+|.||..|+..+..... ...||.|+..+.
T Consensus 170 E~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 170 EKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred CCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 467999987631 257889999999999999887542 456999998765
No 204
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=95.53 E-value=0.0094 Score=44.52 Aligned_cols=42 Identities=38% Similarity=1.023 Sum_probs=22.6
Q ss_pred hcCcccccCCCCc-cccCCchhhhhhHhhhccccCCCCCCCCCCCcc
Q 003502 560 VCGLCNDLADDPV-VTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 605 (815)
Q Consensus 560 ~~~~~~~~~~~~~-~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~ 605 (815)
.|..|.+....|+ +..|.|.||..|+-+...+ .||.|..+.-
T Consensus 9 rCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~----~CPvC~~Paw 51 (65)
T PF14835_consen 9 RCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS----ECPVCHTPAW 51 (65)
T ss_dssp S-SSS-S--SS-B---SSS--B-TTTGGGGTTT----B-SSS--B-S
T ss_pred CCcHHHHHhcCCceeccCccHHHHHHhHHhcCC----CCCCcCChHH
Confidence 4899999999886 7999999999999775543 4999998853
No 205
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=95.52 E-value=0.0052 Score=61.31 Aligned_cols=46 Identities=33% Similarity=0.913 Sum_probs=39.9
Q ss_pred hhcCcccccCCCCccccCCchhhhhhHhhhccccCCCCCCCCCCCccc
Q 003502 559 QVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTV 606 (815)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~ 606 (815)
.-|.+|.+.+..|+++.|+|.||.-|+-.++. ....||.|..++..
T Consensus 24 LRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~--~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 24 LRCGICFEYFNIPMITPCSHTFCSLCIRKFLS--YKPQCPTCCVTVTE 69 (442)
T ss_pred HHHhHHHHHhcCceeccccchHHHHHHHHHhc--cCCCCCceecccch
Confidence 34999999999999999999999999987764 46789999987653
No 206
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=95.51 E-value=0.013 Score=41.37 Aligned_cols=39 Identities=38% Similarity=0.962 Sum_probs=30.8
Q ss_pred cCcccccC---CCCccccCCchhhhhhHhhhccccCCCCCCCCC
Q 003502 561 CGLCNDLA---DDPVVTNCGHAFCKACLFDSSASKFVAKCPTCS 601 (815)
Q Consensus 561 ~~~~~~~~---~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~ 601 (815)
|.+|.... ..+.++.|||.||..|+.... .....||.|+
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~--~~~~~CP~C~ 43 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHIFCEKCLKKLK--GKSVKCPICR 43 (44)
T ss_pred CcCcCccccCCCCeEEcccCCHHHHHHHHhhc--CCCCCCcCCC
Confidence 45555443 457899999999999998877 6788899986
No 207
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.43 E-value=0.077 Score=60.69 Aligned_cols=66 Identities=23% Similarity=0.260 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHHH-HH
Q 003502 124 RYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAV-TQ 202 (815)
Q Consensus 124 ~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~ll-~q 202 (815)
+.|+.++..++.. +-.+|.-.+|+|||.++..++..+....... ...++++++|+.-. ..
T Consensus 148 ~~Qk~A~~~al~~-----~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~--------------~~~~I~l~APTGkAA~r 208 (586)
T TIGR01447 148 NWQKVAVALALKS-----NFSLITGGPGTGKTTTVARLLLALVKQSPKQ--------------GKLRIALAAPTGKAAAR 208 (586)
T ss_pred HHHHHHHHHHhhC-----CeEEEEcCCCCCHHHHHHHHHHHHHHhcccc--------------CCCcEEEECCcHHHHHH
Confidence 7999999887765 5678888999999999877766654322110 01368999997654 34
Q ss_pred HHHHHH
Q 003502 203 WVSEIN 208 (815)
Q Consensus 203 W~~Ei~ 208 (815)
..+-+.
T Consensus 209 L~e~~~ 214 (586)
T TIGR01447 209 LAESLR 214 (586)
T ss_pred HHHHHH
Confidence 444343
No 208
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.42 E-value=0.11 Score=61.60 Aligned_cols=119 Identities=14% Similarity=0.123 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCC-------cEEEEecCCCHHHHHHHHHhhcCC--CCceE
Q 003502 646 IEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGV-------NCVQLVGSMSIPARDAAINRFTED--PDCKI 716 (815)
Q Consensus 646 l~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~-------~~~~i~G~~~~~~R~~~i~~F~~~--~~~~v 716 (815)
+..+.+.|..+....+ ..+|||-.+-..++.+...+...|+ +.+.+-+... .++..++++|... .+-..
T Consensus 507 ~~~l~~~i~~~~~~~p-gg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~-~~~~~~l~~f~~~~~~~~ga 584 (705)
T TIGR00604 507 VRNLGELLVEFSKIIP-DGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDA-QETSDALERYKQAVSEGRGA 584 (705)
T ss_pred HHHHHHHHHHHhhcCC-CcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCc-chHHHHHHHHHHHHhcCCce
Confidence 4566677766665554 4677877777777777776665432 2233444322 5788999999652 11122
Q ss_pred EEEec--CCCcccccccc--cCEEEEeCCCC-Cc------------------------------chHHHHhHhhhcCCCC
Q 003502 717 FLMSL--KAGGVALNLTV--ASHVFLMDPWW-NP------------------------------AVEQQAQDRIHRIGQY 761 (815)
Q Consensus 717 lL~st--~~g~~GlNL~~--a~~vI~~d~~w-np------------------------------~~~~QaigR~~R~GQ~ 761 (815)
+|+++ ...+||||+.+ +..||++-.|+ +| ....|++||+.|--+.
T Consensus 585 vL~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D 664 (705)
T TIGR00604 585 VLLSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDD 664 (705)
T ss_pred EEEEecCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCc
Confidence 44465 67899999994 77888888776 44 1246899999997776
Q ss_pred CcEEE
Q 003502 762 KPIRI 766 (815)
Q Consensus 762 ~~V~v 766 (815)
+.+.|
T Consensus 665 ~G~ii 669 (705)
T TIGR00604 665 YGSIV 669 (705)
T ss_pred eEEEE
Confidence 65544
No 209
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=95.34 E-value=0.11 Score=47.56 Aligned_cols=46 Identities=9% Similarity=0.078 Sum_probs=32.1
Q ss_pred CHHHHHHHHHhhcCCCCceEEEEecCCCcccccccc--cCEEEEeCCCC
Q 003502 697 SIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTV--ASHVFLMDPWW 743 (815)
Q Consensus 697 ~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~--a~~vI~~d~~w 743 (815)
+..+...+++.|.+..+.-| |+++...+||+|++. +..||+.-.|+
T Consensus 32 ~~~~~~~~l~~f~~~~~~~i-L~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 32 DGKETGKLLEKYVEACENAI-LLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred ChhHHHHHHHHHHHcCCCEE-EEEccceecceecCCCCeeEEEEEecCC
Confidence 33457889999987533244 456666999999994 56677777554
No 210
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=95.30 E-value=0.13 Score=60.64 Aligned_cols=92 Identities=11% Similarity=0.166 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHh-CCCcEEEEecCCCHHHHHHHHHhhcCC---CCceEEEEe
Q 003502 645 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK-SGVNCVQLVGSMSIPARDAAINRFTED---PDCKIFLMS 720 (815)
Q Consensus 645 Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~-~g~~~~~i~G~~~~~~R~~~i~~F~~~---~~~~vlL~s 720 (815)
=...+.+.|..++. .++ ++|||..+..+++.+...|.. .+.+ +.+.|. ..|.++++.|.+. ++..|+| .
T Consensus 519 ~~~~~~~~i~~l~~-~~g-g~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~-g 591 (697)
T PRK11747 519 HTAEMAEFLPELLE-KHK-GSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLF-G 591 (697)
T ss_pred HHHHHHHHHHHHHh-cCC-CEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEE-E
Confidence 35577777777776 433 467766666777777777764 3333 344564 3567888777641 2334555 5
Q ss_pred cCCCcccccccc--cCEEEEeCCCC
Q 003502 721 LKAGGVALNLTV--ASHVFLMDPWW 743 (815)
Q Consensus 721 t~~g~~GlNL~~--a~~vI~~d~~w 743 (815)
+....||||+++ +..||+.-+|+
T Consensus 592 ~~sf~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 592 LQSFAEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred eccccccccCCCCceEEEEEEcCCC
Confidence 689999999984 67888877665
No 211
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.008 Score=58.49 Aligned_cols=49 Identities=35% Similarity=0.690 Sum_probs=42.8
Q ss_pred hhhhhcCcccccCCCCccccCCchhhhhhHhhhccccCCCCCCCCCCCc
Q 003502 556 HVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPL 604 (815)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~ 604 (815)
..+..|.+|.+.++.++-..|||.||-.|+...........||.|+...
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~ 261 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKV 261 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhc
Confidence 3467799999999999999999999999999986666777899998754
No 212
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=95.28 E-value=0.0065 Score=42.20 Aligned_cols=37 Identities=43% Similarity=0.985 Sum_probs=19.6
Q ss_pred cCcccccCC----CCccccCCchhhhhhHhhhcccc--CCCCCC
Q 003502 561 CGLCNDLAD----DPVVTNCGHAFCKACLFDSSASK--FVAKCP 598 (815)
Q Consensus 561 ~~~~~~~~~----~~~~~~~~~~~c~~c~~~~~~~~--~~~~~~ 598 (815)
|.+|.+ .. .|+++.|||.||..|+....... ..-+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 455665 33 37889999999999998866633 344554
No 213
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.27 E-value=0.049 Score=62.45 Aligned_cols=39 Identities=21% Similarity=0.257 Sum_probs=31.8
Q ss_pred eeeEEEeecceeccCCCchHHHHHHhhhcCcEEEeeCCCCC
Q 003502 335 KWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQ 375 (815)
Q Consensus 335 ~~~~vIvDEaH~~kn~~s~~~~~~~~l~~~~r~~LTgTPi~ 375 (815)
.+++||||||-.+- .......+..++...|++|-|=|-|
T Consensus 265 ~~dvlIvDEaSMvd--~~lm~~ll~al~~~~rlIlvGD~~Q 303 (615)
T PRK10875 265 HLDVLVVDEASMVD--LPMMARLIDALPPHARVIFLGDRDQ 303 (615)
T ss_pred CCCeEEEChHhccc--HHHHHHHHHhcccCCEEEEecchhh
Confidence 56899999999984 3456667777888999999998876
No 214
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.15 E-value=0.094 Score=61.86 Aligned_cols=65 Identities=25% Similarity=0.279 Sum_probs=45.8
Q ss_pred ccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHH
Q 003502 120 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA 199 (815)
Q Consensus 120 ~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~l 199 (815)
..|-+-|++++..+... +-.+|--.+|+|||.++-+++......+. ..++++++|..-
T Consensus 322 ~~l~~~Q~~Ai~~~~~~-----~~~iitGgpGTGKTt~l~~i~~~~~~~~~-----------------~~~v~l~ApTg~ 379 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQH-----KVVILTGGPGTGKTTITRAIIELAEELGG-----------------LLPVGLAAPTGR 379 (720)
T ss_pred CCCCHHHHHHHHHHHhC-----CeEEEECCCCCCHHHHHHHHHHHHHHcCC-----------------CceEEEEeCchH
Confidence 46889999999887542 45788889999999988666655443221 137888999877
Q ss_pred HHHHHHH
Q 003502 200 VTQWVSE 206 (815)
Q Consensus 200 l~qW~~E 206 (815)
......|
T Consensus 380 AA~~L~e 386 (720)
T TIGR01448 380 AAKRLGE 386 (720)
T ss_pred HHHHHHH
Confidence 6554444
No 215
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.13 E-value=0.084 Score=51.53 Aligned_cols=57 Identities=28% Similarity=0.264 Sum_probs=37.3
Q ss_pred chHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHHH
Q 003502 122 LLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAV 200 (815)
Q Consensus 122 L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~ll 200 (815)
|-+-|++++..++.. ..+-.+|--..|+|||...-.+...+... + .++++++|.+-.
T Consensus 2 L~~~Q~~a~~~~l~~---~~~~~~l~G~aGtGKT~~l~~~~~~~~~~-g------------------~~v~~~apT~~A 58 (196)
T PF13604_consen 2 LNEEQREAVRAILTS---GDRVSVLQGPAGTGKTTLLKALAEALEAA-G------------------KRVIGLAPTNKA 58 (196)
T ss_dssp S-HHHHHHHHHHHHC---TCSEEEEEESTTSTHHHHHHHHHHHHHHT-T--------------------EEEEESSHHH
T ss_pred CCHHHHHHHHHHHhc---CCeEEEEEECCCCCHHHHHHHHHHHHHhC-C------------------CeEEEECCcHHH
Confidence 678999999887653 21235666689999998765554444332 1 488999997553
No 216
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=95.04 E-value=0.42 Score=51.95 Aligned_cols=129 Identities=12% Similarity=0.090 Sum_probs=98.2
Q ss_pred chHHHHHHHHHHHHHh-cCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEec
Q 003502 643 STKIEALREEIRFMVE-RDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSL 721 (815)
Q Consensus 643 s~Kl~~l~~~l~~~~~-~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st 721 (815)
..+++.+.+.|.-.+. .....++|||...---.-.|..+|...++.++.++-.++..+-..+-..|..| ...+||.|-
T Consensus 280 d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G-~~~iLL~TE 358 (442)
T PF06862_consen 280 DARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHG-RKPILLYTE 358 (442)
T ss_pred hHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcC-CceEEEEEh
Confidence 5677777775444444 55567899998877777778999999999999999999999999999999998 889999884
Q ss_pred CCCc-ccccccccCEEEEeCCCCCcchHHHHhHhhhcCCC----CCcEEEEEEEeC
Q 003502 722 KAGG-VALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQ----YKPIRIVRFLIE 772 (815)
Q Consensus 722 ~~g~-~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ----~~~V~vy~l~~~ 772 (815)
+.-= .=..+.++.+||+|.||-+|.-|...+.-+..-.+ ..+..+.-|+++
T Consensus 359 R~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk 414 (442)
T PF06862_consen 359 RFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSK 414 (442)
T ss_pred HHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecH
Confidence 4321 23456789999999999999999888866554433 334555555554
No 217
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=94.93 E-value=0.21 Score=58.78 Aligned_cols=40 Identities=20% Similarity=0.106 Sum_probs=28.1
Q ss_pred ccchHHHHHHHHHHHHHhhcc----CCCCeeeccCCCchHHHHH
Q 003502 120 TPLLRYQKEWLAWALKQEESA----IRGGILADEMGMGKTIQAI 159 (815)
Q Consensus 120 ~~L~~yQ~~~~~~~~~~~~~~----~~g~ILade~GlGKTi~ai 159 (815)
...||-|.+....+...+... .+..++=..||+|||+--+
T Consensus 24 ~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYL 67 (697)
T PRK11747 24 FIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYL 67 (697)
T ss_pred CCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHH
Confidence 347999999887777666542 2234555589999999754
No 218
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=94.71 E-value=0.27 Score=58.97 Aligned_cols=85 Identities=15% Similarity=0.182 Sum_probs=52.2
Q ss_pred ccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHH
Q 003502 120 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA 199 (815)
Q Consensus 120 ~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~l 199 (815)
...||-|.+....+...+..+ ...++-..+|+|||+.-+.-+.... . ..+++|.+|...
T Consensus 244 ~e~R~~Q~~ma~~V~~~l~~~-~~~~~eA~tGtGKT~ayllp~l~~~--~------------------~~~vvI~t~T~~ 302 (820)
T PRK07246 244 LEERPKQESFAKLVGEDFHDG-PASFIEAQTGIGKTYGYLLPLLAQS--D------------------QRQIIVSVPTKI 302 (820)
T ss_pred CccCHHHHHHHHHHHHHHhCC-CcEEEECCCCCcHHHHHHHHHHHhc--C------------------CCcEEEEeCcHH
Confidence 357899999777777666544 3455666999999998644333221 1 148999999765
Q ss_pred H-HHH-HHHHHHhcCCCCcEEEEEeCCC
Q 003502 200 V-TQW-VSEINRFTSVGSTKVLIYHGSN 225 (815)
Q Consensus 200 l-~qW-~~Ei~~~~~~~~~~v~~~~g~~ 225 (815)
+ .|- .+++..+.....+++....|..
T Consensus 303 Lq~Ql~~~~i~~l~~~~~~~~~~~kg~~ 330 (820)
T PRK07246 303 LQDQIMAEEVKAIQEVFHIDCHSLKGPQ 330 (820)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEECCc
Confidence 5 554 3555443221235555555543
No 219
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=94.68 E-value=0.017 Score=59.05 Aligned_cols=48 Identities=27% Similarity=0.698 Sum_probs=43.3
Q ss_pred hhhcCcccccCCCCccccCCchhhhhhHhhhccccCCCCCCCCCCCcc
Q 003502 558 QQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 605 (815)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~ 605 (815)
.+.|.+|.+-..+--+-.|||..|..|+..+-.++..-.||.|+-.+.
T Consensus 369 FeLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 369 FELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred HHHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 467999998888889999999999999999999999999999997654
No 220
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=94.66 E-value=0.029 Score=37.94 Aligned_cols=39 Identities=38% Similarity=0.961 Sum_probs=30.9
Q ss_pred cCcccccCCCCccccCCchhhhhhHhhhccccCCCCCCCC
Q 003502 561 CGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTC 600 (815)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~ 600 (815)
|.+|.+....+.+..|+|.||..|+..+.. .....||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHH-hCcCCCCCC
Confidence 567777778888999999999999988766 445667765
No 221
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=94.40 E-value=0.023 Score=69.86 Aligned_cols=93 Identities=16% Similarity=0.135 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 003502 645 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 724 (815)
Q Consensus 645 Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g 724 (815)
+...+.+.+.... +++|+-...+...+...+. .++..+..+...++..|... +....+
T Consensus 432 ~~~~~~~~~~~~~-------~~~~~v~itty~~l~~~~~--------~~~~l~~~~~~~~v~DEa~~-------ikn~~s 489 (866)
T COG0553 432 KREALRDLLKLHL-------VIIFDVVITTYELLRRFLV--------DHGGLKKIEWDRVVLDEAHR-------IKNDQS 489 (866)
T ss_pred HHHHHHHHhhhcc-------cceeeEEechHHHHHHhhh--------hHHHHhhceeeeeehhhHHH-------Hhhhhh
Confidence 3555555554331 7888888888888887541 11111111222222222221 355788
Q ss_pred cccccccccCEEEEeCCCCCcchHHHHhHhhhcCCCC
Q 003502 725 GVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQY 761 (815)
Q Consensus 725 ~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~ 761 (815)
.+|.++..++..+.++.+|+| .+|++++.|++++.
T Consensus 490 ~~~~~l~~~~~~~~~~LtgTP--len~l~eL~sl~~~ 524 (866)
T COG0553 490 SEGKALQFLKALNRLDLTGTP--LENRLGELWSLLQE 524 (866)
T ss_pred HHHHHHHHHhhcceeeCCCCh--HhhhHHHHHHHHHH
Confidence 899999999999999999999 79999999999995
No 222
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=94.39 E-value=0.031 Score=39.29 Aligned_cols=42 Identities=38% Similarity=0.917 Sum_probs=31.5
Q ss_pred cCcccccCCCCcc-ccCCchhhhhhHhhhccccCCCCCCCCCCC
Q 003502 561 CGLCNDLADDPVV-TNCGHAFCKACLFDSSASKFVAKCPTCSIP 603 (815)
Q Consensus 561 ~~~~~~~~~~~~~-~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~ 603 (815)
|.+|.+....+.. ..|+|.||..|+..+... ....||.|+..
T Consensus 2 C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~-~~~~Cp~C~~~ 44 (45)
T cd00162 2 CPICLEEFREPVVLLPCGHVFCRSCIDKWLKS-GKNTCPLCRTP 44 (45)
T ss_pred CCcCchhhhCceEecCCCChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence 6677776655544 459999999999887665 56779999764
No 223
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=94.25 E-value=0.17 Score=57.72 Aligned_cols=75 Identities=16% Similarity=0.189 Sum_probs=55.5
Q ss_pred CCCCCCcccccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCcc
Q 003502 111 TAEDPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKA 190 (815)
Q Consensus 111 ~~~~p~~~~~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (815)
....|........|||++-..-+-.. ..+...+.-..-+|||.+++.++.+.....+ .|
T Consensus 6 ~s~~pG~w~~~~~Py~~eimd~~~~~---~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P------------------~~ 64 (557)
T PF05876_consen 6 SSAEPGPWRTDRTPYLREIMDALSDP---SVREVVVMKSAQVGKTELLLNWIGYSIDQDP------------------GP 64 (557)
T ss_pred CCCCCCCCCCCCChhHHHHHHhcCCc---CccEEEEEEcchhhHhHHHHhhceEEEEeCC------------------CC
Confidence 44557778889999998777654332 2456677778899999998888888776554 59
Q ss_pred EEEEcCh-HHHHHHHHH
Q 003502 191 TLVICPV-AAVTQWVSE 206 (815)
Q Consensus 191 ~LIV~P~-~ll~qW~~E 206 (815)
+|+|.|. .....|.++
T Consensus 65 ~l~v~Pt~~~a~~~~~~ 81 (557)
T PF05876_consen 65 MLYVQPTDDAAKDFSKE 81 (557)
T ss_pred EEEEEEcHHHHHHHHHH
Confidence 9999995 556778643
No 224
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=94.10 E-value=0.078 Score=42.15 Aligned_cols=48 Identities=21% Similarity=0.367 Sum_probs=37.6
Q ss_pred hhcCcccccCCCCccccCCchhhhhhHhhhccccCCCCCCCCCCCcccc
Q 003502 559 QVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVD 607 (815)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~ 607 (815)
..|.++..+..+|+++.+||.|++.|+.++... ....||.|+.++...
T Consensus 5 f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~-~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 5 FLCPITGELMRDPVILPSGHTYERSAIERWLEQ-NGGTDPFTRQPLSES 52 (73)
T ss_dssp GB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCT-TSSB-TTT-SB-SGG
T ss_pred cCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHc-CCCCCCCCCCcCCcc
Confidence 469999999999999999999999999998887 678899998776643
No 225
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=94.07 E-value=0.26 Score=45.10 Aligned_cols=43 Identities=5% Similarity=0.205 Sum_probs=28.9
Q ss_pred HHHHHHHhhcCCCC--ceEEEEecCC--Ccccccccc--cCEEEEeCCCC
Q 003502 700 ARDAAINRFTEDPD--CKIFLMSLKA--GGVALNLTV--ASHVFLMDPWW 743 (815)
Q Consensus 700 ~R~~~i~~F~~~~~--~~vlL~st~~--g~~GlNL~~--a~~vI~~d~~w 743 (815)
+..+++++|++... --||+ ++.. .+||+||++ +..||+.-.|+
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~-~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 32 ETEELLEKYSAACEARGALLL-AVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEE-EEeCCeeecceecCCCccEEEEEEecCC
Confidence 45688999987422 13444 5444 799999994 56788877664
No 226
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=93.99 E-value=0.017 Score=40.77 Aligned_cols=40 Identities=28% Similarity=0.752 Sum_probs=30.4
Q ss_pred hcCcccccC---CCCccccCCchhhhhhHhhhccccCCCCCCCCC
Q 003502 560 VCGLCNDLA---DDPVVTNCGHAFCKACLFDSSASKFVAKCPTCS 601 (815)
Q Consensus 560 ~~~~~~~~~---~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~ 601 (815)
.|.+|.+.. +..+.+.|+|.|+..|+..+.... ..||.|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~--~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN--NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS--SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC--CcCCccC
Confidence 467777554 455678899999999999988764 5999985
No 227
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=93.97 E-value=0.29 Score=48.12 Aligned_cols=109 Identities=14% Similarity=0.060 Sum_probs=71.6
Q ss_pred ccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHH
Q 003502 120 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA 199 (815)
Q Consensus 120 ~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~l 199 (815)
..+||-|.+.+..|... ....+.++-.=||-|||-..+=+++.....+. +=+-+|||+++
T Consensus 22 iliR~~Q~~ia~~mi~~--~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~------------------~LvrviVpk~L 81 (229)
T PF12340_consen 22 ILIRPVQVEIAREMISP--PSGKNSVMQLNMGEGKTSVIVPMLALALADGS------------------RLVRVIVPKAL 81 (229)
T ss_pred ceeeHHHHHHHHHHhCC--CCCCCeEeeecccCCccchHHHHHHHHHcCCC------------------cEEEEEcCHHH
Confidence 44899999999888763 23357888999999999987666665554332 35689999999
Q ss_pred HHHHHHHHHHhcCCC-CcEEEEE--eCCCCcCCcc-----------cccCCCEEEechhhhHHH
Q 003502 200 VTQWVSEINRFTSVG-STKVLIY--HGSNRERSAK-----------QFSEFDFVITTYSIIEAD 249 (815)
Q Consensus 200 l~qW~~Ei~~~~~~~-~~~v~~~--~g~~~~~~~~-----------~~~~~~vvi~ty~~l~~~ 249 (815)
+.|-..-+..-+..- +-+|+.+ ..... .... ......|++++.+.+...
T Consensus 82 l~q~~~~L~~~lg~l~~r~i~~lpFsR~~~-~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf 144 (229)
T PF12340_consen 82 LEQMRQMLRSRLGGLLNRRIYHLPFSRSTP-LTPETLEKIRQLLEECMRSGGILLATPEHILSF 144 (229)
T ss_pred HHHHHHHHHHHHHHHhCCeeEEecccCCCC-CCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHH
Confidence 999988888755421 2233332 22211 1111 113567999999977553
No 228
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.87 E-value=0.049 Score=55.45 Aligned_cols=48 Identities=29% Similarity=0.722 Sum_probs=35.0
Q ss_pred hhcCcccc--cCCCC---ccccCCchhhhhhHhhhccccCCCCCCCCCCCcccc
Q 003502 559 QVCGLCND--LADDP---VVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVD 607 (815)
Q Consensus 559 ~~~~~~~~--~~~~~---~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~ 607 (815)
..|.+|.. ..+.. .+..|||.||..|+..... .....||.|+.++...
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~-~~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV-RGSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhc-CCCCCCCCCCCccchh
Confidence 56999986 33333 3447999999999977643 3567999999877543
No 229
>PRK04296 thymidine kinase; Provisional
Probab=93.83 E-value=0.31 Score=47.26 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=18.4
Q ss_pred eeeccCCCchHHHHHHHHHhccc
Q 003502 145 ILADEMGMGKTIQAIALVLAKRE 167 (815)
Q Consensus 145 ILade~GlGKTi~ai~li~~~~~ 167 (815)
++.-+||.|||..++.++.....
T Consensus 6 litG~~GsGKTT~~l~~~~~~~~ 28 (190)
T PRK04296 6 FIYGAMNSGKSTELLQRAYNYEE 28 (190)
T ss_pred EEECCCCCHHHHHHHHHHHHHHH
Confidence 55668999999999888876653
No 230
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=93.43 E-value=0.022 Score=57.51 Aligned_cols=46 Identities=35% Similarity=0.855 Sum_probs=38.9
Q ss_pred hhhcCcccccC-CCCccccCCchhhhhhHhhhccccCCCCCCCCCCCcc
Q 003502 558 QQVCGLCNDLA-DDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 605 (815)
Q Consensus 558 ~~~~~~~~~~~-~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~ 605 (815)
...|.+|..+. +...+..|.|.||++|+..+... ...||.|...+.
T Consensus 15 ~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~--~~~CP~C~i~ih 61 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE--SKYCPTCDIVIH 61 (331)
T ss_pred ceehhhccceeecchhHHHHHHHHHHHHHHHHHHH--hccCCccceecc
Confidence 34699998765 55679999999999999999887 889999987654
No 231
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=93.32 E-value=0.12 Score=53.14 Aligned_cols=24 Identities=29% Similarity=0.162 Sum_probs=18.7
Q ss_pred CCeeeccCCCchHHHHHHHHHhcc
Q 003502 143 GGILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 143 g~ILade~GlGKTi~ai~li~~~~ 166 (815)
+.||.-++|+|||..|-+++..+.
T Consensus 44 ~vll~GppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILGKLFK 67 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHH
Confidence 457888999999999966665543
No 232
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.14 E-value=0.055 Score=52.99 Aligned_cols=51 Identities=25% Similarity=0.615 Sum_probs=43.2
Q ss_pred hhhhhhcCcccccCCCCcccc-CCchhhhhhHhhhccccCCCCCCCCCCCcc
Q 003502 555 EHVQQVCGLCNDLADDPVVTN-CGHAFCKACLFDSSASKFVAKCPTCSIPLT 605 (815)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~-~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~ 605 (815)
.....+|..|++.+.-|.+.. |+|.+|..|+......+..-.||.|..+..
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 445678999999887776555 999999999999999999999999987653
No 233
>PRK06526 transposase; Provisional
Probab=92.42 E-value=0.3 Score=49.60 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=21.4
Q ss_pred CCCeeeccCCCchHHHHHHHHHhccc
Q 003502 142 RGGILADEMGMGKTIQAIALVLAKRE 167 (815)
Q Consensus 142 ~g~ILade~GlGKTi~ai~li~~~~~ 167 (815)
.+.+|.-.+|+|||..+.++......
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~ 124 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQ 124 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHH
Confidence 57888889999999999888766543
No 234
>PHA02533 17 large terminase protein; Provisional
Probab=91.93 E-value=1 Score=50.94 Aligned_cols=41 Identities=24% Similarity=0.212 Sum_probs=28.0
Q ss_pred ccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhc
Q 003502 120 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAK 165 (815)
Q Consensus 120 ~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~ 165 (815)
..|.|+|+..+..|... +-.++.-.=..|||..+.+++++.
T Consensus 58 f~L~p~Q~~i~~~~~~~-----R~~ii~~aRq~GKStl~a~~al~~ 98 (534)
T PHA02533 58 VQMRDYQKDMLKIMHKN-----RFNACNLSRQLGKTTVVAIFLLHY 98 (534)
T ss_pred cCCcHHHHHHHHHHhcC-----eEEEEEEcCcCChHHHHHHHHHHH
Confidence 56899999988776321 233555567899999986655443
No 235
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=91.67 E-value=1.5 Score=43.73 Aligned_cols=25 Identities=32% Similarity=0.124 Sum_probs=19.5
Q ss_pred CCCeeeccCCCchHHHHHHHHHhcc
Q 003502 142 RGGILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 142 ~g~ILade~GlGKTi~ai~li~~~~ 166 (815)
+..+|--+.|+|||..+.++.....
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~~~ 63 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAE 63 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567778999999999977766543
No 236
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=91.29 E-value=0.39 Score=49.93 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=19.9
Q ss_pred CCeeeccCCCchHHHHHHHHHhccc
Q 003502 143 GGILADEMGMGKTIQAIALVLAKRE 167 (815)
Q Consensus 143 g~ILade~GlGKTi~ai~li~~~~~ 167 (815)
+.+|.-++|+|||..|-+++..++.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~ 84 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHR 84 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5677889999999999777666654
No 237
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=91.22 E-value=1.4 Score=40.14 Aligned_cols=24 Identities=29% Similarity=0.235 Sum_probs=18.4
Q ss_pred CCCeeeccCCCchHHHHHHHHHhc
Q 003502 142 RGGILADEMGMGKTIQAIALVLAK 165 (815)
Q Consensus 142 ~g~ILade~GlGKTi~ai~li~~~ 165 (815)
+..++.-++|+|||..+-.++...
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 467888899999998776665544
No 238
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.98 E-value=1.5 Score=47.41 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=34.3
Q ss_pred eeeEEEeecceeccCCCchHH---HHHHhhhc--CcEEEeeCCCCCCchhhHHHHHHHhc
Q 003502 335 KWERIILDEAHFIKDRRSNTA---KAVLALES--SYKWALSGTPLQNRVGELYSLVRFLQ 389 (815)
Q Consensus 335 ~~~~vIvDEaH~~kn~~s~~~---~~~~~l~~--~~r~~LTgTPi~n~~~el~~ll~~L~ 389 (815)
..++||||++.+......... ..+..... ..-++|+||--++.+.+++.-+..++
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~ 313 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFS 313 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCC
Confidence 468999999998754322222 22222222 34488999987777777776665544
No 239
>PLN03025 replication factor C subunit; Provisional
Probab=90.81 E-value=1.7 Score=46.15 Aligned_cols=55 Identities=15% Similarity=0.233 Sum_probs=32.4
Q ss_pred eeeEEEeecceeccCCCch-HHHHHHhhhcCcEEEeeCCCCCCchhhHHHHHHHhc
Q 003502 335 KWERIILDEAHFIKDRRSN-TAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQ 389 (815)
Q Consensus 335 ~~~~vIvDEaH~~kn~~s~-~~~~~~~l~~~~r~~LTgTPi~n~~~el~~ll~~L~ 389 (815)
.|.+||+||+|.+-..... ..+.+.......+++|++++...-+..|-+-...+.
T Consensus 99 ~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~ 154 (319)
T PLN03025 99 RHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVR 154 (319)
T ss_pred CeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhccc
Confidence 4789999999998543211 111222224456788888876555555555544443
No 240
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=90.54 E-value=0.32 Score=50.42 Aligned_cols=39 Identities=26% Similarity=0.251 Sum_probs=27.3
Q ss_pred eeEEEeecceeccCCCchHHHHHHhhhcCcEEEeeCCCCCC
Q 003502 336 WERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQN 376 (815)
Q Consensus 336 ~~~vIvDEaH~~kn~~s~~~~~~~~l~~~~r~~LTgTPi~n 376 (815)
=.+||||||+++-.. ..--.+.+.-...+++|||-|.|-
T Consensus 352 ~~FiIIDEaQNLTph--eikTiltR~G~GsKIVl~gd~aQi 390 (436)
T COG1875 352 DSFIIIDEAQNLTPH--ELKTILTRAGEGSKIVLTGDPAQI 390 (436)
T ss_pred cceEEEehhhccCHH--HHHHHHHhccCCCEEEEcCCHHHc
Confidence 357999999998432 222233455778999999998763
No 241
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.51 E-value=0.079 Score=37.68 Aligned_cols=46 Identities=30% Similarity=0.803 Sum_probs=38.9
Q ss_pred hhcCcccccCCCCccccCCch-hhhhhHhhhccccCCCCCCCCCCCcc
Q 003502 559 QVCGLCNDLADDPVVTNCGHA-FCKACLFDSSASKFVAKCPTCSIPLT 605 (815)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~-~c~~c~~~~~~~~~~~~~~~~~~~~~ 605 (815)
.+|.+|.+.+-+.++..|||. .|..|-...... ....||.|+.++.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~-~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKA-LHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHc-cCCcCcchhhHHH
Confidence 579999999999999999996 899998665444 7889999998864
No 242
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.37 E-value=0.63 Score=55.29 Aligned_cols=73 Identities=18% Similarity=0.290 Sum_probs=54.1
Q ss_pred cchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcCh-HH
Q 003502 121 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-AA 199 (815)
Q Consensus 121 ~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-~l 199 (815)
++||.|++....+...+..+ ..+++-.++|+|||+.+++.++......+ ...+++..+.+ +-
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~~-~~~llEsPTGtGKTlslL~~aL~~~~~~~----------------~~~kIiy~sRThsQ 72 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDRG-DEAILEMPSGTGKTISLLSLILAYQQEKP----------------EVRKIIYASRTHSQ 72 (705)
T ss_pred CCCHHHHHHHHHHHHHhccC-CceEEeCCCCCCccHHHHHHHHHHHHhcc----------------ccccEEEEcccchH
Confidence 46999999998888877776 48899999999999998876665443221 11255555664 45
Q ss_pred HHHHHHHHHHh
Q 003502 200 VTQWVSEINRF 210 (815)
Q Consensus 200 l~qW~~Ei~~~ 210 (815)
+.|-.+|+++.
T Consensus 73 l~q~i~Elk~~ 83 (705)
T TIGR00604 73 LEQATEELRKL 83 (705)
T ss_pred HHHHHHHHHhh
Confidence 89999999983
No 243
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=90.35 E-value=2.3 Score=48.94 Aligned_cols=83 Identities=27% Similarity=0.342 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcCh-HHHHHHH
Q 003502 126 QKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-AAVTQWV 204 (815)
Q Consensus 126 Q~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-~ll~qW~ 204 (815)
|.+.+.++...+... ...++-..+|+|||+..+.-+....... ..+++||++|. .|..|+.
T Consensus 2 Q~~~~~~i~~al~~~-~~lliEA~TGtGKTlAYLlpal~~~~~~-----------------~~~rvlIstpT~~Lq~Ql~ 63 (636)
T TIGR03117 2 QALFYLNCLTSLRQK-RIGMLEASTGVGKTLAMIMAALTMLKER-----------------PDQKIAIAVPTLALMGQLW 63 (636)
T ss_pred HHHHHHHHHHHHhcC-CeEEEEcCCCCcHHHHHHHHHHHHHHhc-----------------cCceEEEECCcHHHHHHHH
Confidence 677777776666544 3556667999999998765544332211 11589999995 5669999
Q ss_pred HHHHHhc-C--CCCcEEEEEeCCCC
Q 003502 205 SEINRFT-S--VGSTKVLIYHGSNR 226 (815)
Q Consensus 205 ~Ei~~~~-~--~~~~~v~~~~g~~~ 226 (815)
+++..+. . ...+++....|...
T Consensus 64 ~~l~~l~~~~l~~~i~~~~lkGr~n 88 (636)
T TIGR03117 64 SELERLTAEGLAGPVQAGFFPGSQE 88 (636)
T ss_pred HHHHHHHHhhcCCCeeEEEEECCcc
Confidence 8887654 1 12566666666543
No 244
>CHL00181 cbbX CbbX; Provisional
Probab=90.21 E-value=0.61 Score=48.44 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=18.7
Q ss_pred CeeeccCCCchHHHHHHHHHhcc
Q 003502 144 GILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 144 ~ILade~GlGKTi~ai~li~~~~ 166 (815)
.+|.-++|+|||..|-+++....
T Consensus 62 ill~G~pGtGKT~lAr~la~~~~ 84 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADILY 84 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 47888999999999977766554
No 245
>PRK08084 DNA replication initiation factor; Provisional
Probab=90.13 E-value=1.6 Score=43.88 Aligned_cols=24 Identities=17% Similarity=-0.046 Sum_probs=18.3
Q ss_pred CCCeeeccCCCchHHHHHHHHHhc
Q 003502 142 RGGILADEMGMGKTIQAIALVLAK 165 (815)
Q Consensus 142 ~g~ILade~GlGKTi~ai~li~~~ 165 (815)
+..+|.-+.|+|||-.+.++....
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~ 69 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAEL 69 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 456888899999998876665543
No 246
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=89.72 E-value=0.43 Score=55.92 Aligned_cols=87 Identities=23% Similarity=0.217 Sum_probs=58.9
Q ss_pred CCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcC-hHHHHHHHHHHHHhcCCCCcEEEEE
Q 003502 143 GGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VAAVTQWVSEINRFTSVGSTKVLIY 221 (815)
Q Consensus 143 g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P-~~ll~qW~~Ei~~~~~~~~~~v~~~ 221 (815)
+.++.+.+|.|||+.+-..+....... +.+++.+|+| +.++.-=.+.+.+-...+.+++.-.
T Consensus 945 ~~~~g~ptgsgkt~~ae~a~~~~~~~~-----------------p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~ 1007 (1230)
T KOG0952|consen 945 NFLLGAPTGSGKTVVAELAIFRALSYY-----------------PGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIEL 1007 (1230)
T ss_pred hhhhcCCccCcchhHHHHHHHHHhccC-----------------CCccEEEEcCCchhhcccccchhhhcccCCceeEec
Confidence 668899999999998743333332222 2368999999 6776544444444333336778888
Q ss_pred eCCCCcCCcccccCCCEEEechhhhH
Q 003502 222 HGSNRERSAKQFSEFDFVITTYSIIE 247 (815)
Q Consensus 222 ~g~~~~~~~~~~~~~~vvi~ty~~l~ 247 (815)
.|+.... .....+.+++|+|++...
T Consensus 1008 tgd~~pd-~~~v~~~~~~ittpek~d 1032 (1230)
T KOG0952|consen 1008 TGDVTPD-VKAVREADIVITTPEKWD 1032 (1230)
T ss_pred cCccCCC-hhheecCceEEccccccc
Confidence 8876544 556778899999998753
No 247
>PF13245 AAA_19: Part of AAA domain
Probab=89.70 E-value=0.67 Score=37.14 Aligned_cols=49 Identities=22% Similarity=0.231 Sum_probs=33.0
Q ss_pred CeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHH-HHHHHHHH
Q 003502 144 GILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA-VTQWVSEI 207 (815)
Q Consensus 144 ~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~l-l~qW~~Ei 207 (815)
.++--.+|+|||.+++..+..+...... ..+++|||+|..- +.+-.+.+
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~---------------~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARAD---------------PGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcC---------------CCCeEEEECCCHHHHHHHHHHH
Confidence 4557799999999888888877642111 0258999999655 44444444
No 248
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=89.46 E-value=0.12 Score=47.61 Aligned_cols=47 Identities=34% Similarity=0.857 Sum_probs=36.1
Q ss_pred hhhhhhhcCcccccCCCCccccCCchhhhhhHhhhccccCCCCCCCCCC
Q 003502 554 AEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSI 602 (815)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~ 602 (815)
.+.+-..|.+|......|++..|||.||..|.+.... ....|-.|..
T Consensus 192 ~e~IPF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~--kg~~C~~Cgk 238 (259)
T COG5152 192 GEKIPFLCGICKKDYESPVVTECGHSFCSLCAIRKYQ--KGDECGVCGK 238 (259)
T ss_pred CCCCceeehhchhhccchhhhhcchhHHHHHHHHHhc--cCCcceecch
Confidence 3455678999999999999999999999999976432 2345555543
No 249
>PRK08116 hypothetical protein; Validated
Probab=89.31 E-value=2.8 Score=43.12 Aligned_cols=26 Identities=31% Similarity=0.289 Sum_probs=21.5
Q ss_pred CCCeeeccCCCchHHHHHHHHHhccc
Q 003502 142 RGGILADEMGMGKTIQAIALVLAKRE 167 (815)
Q Consensus 142 ~g~ILade~GlGKTi~ai~li~~~~~ 167 (815)
.|.+|.-++|+|||..+.+++..+..
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~ 140 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIE 140 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46888999999999999887776654
No 250
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=89.30 E-value=1.9 Score=49.97 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=19.8
Q ss_pred CCeeeccCCCchHHHHHHHHHhcc
Q 003502 143 GGILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 143 g~ILade~GlGKTi~ai~li~~~~ 166 (815)
..||.-..|+|||..+..+...+.
T Consensus 40 AyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 40 AYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 347888999999999988877665
No 251
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.27 E-value=0.46 Score=52.25 Aligned_cols=84 Identities=18% Similarity=0.167 Sum_probs=46.6
Q ss_pred eccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcC-hHHHHHHHHHHHHhcCCCCcE-----EEE
Q 003502 147 ADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VAAVTQWVSEINRFTSVGSTK-----VLI 220 (815)
Q Consensus 147 ade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P-~~ll~qW~~Ei~~~~~~~~~~-----v~~ 220 (815)
-..+|+|||+++.++|+++...+= +.+|..|- ++++..-..-+ +++...+ ++-
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgy------------------r~flffvnq~nilekt~~nf---td~~s~kylf~e~i~ 61 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGY------------------RNFLFFVNQANILEKTKLNF---TDSVSSKYLFSENIN 61 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhch------------------hhEEEEecchhHHHHHHhhc---ccchhhhHhhhhhhh
Confidence 357999999999999998876542 35555554 77776554433 2211111 111
Q ss_pred EeCCCCc-CCcc----cccCCCEEEechhhhHHHhh
Q 003502 221 YHGSNRE-RSAK----QFSEFDFVITTYSIIEADYR 251 (815)
Q Consensus 221 ~~g~~~~-~~~~----~~~~~~vvi~ty~~l~~~~~ 251 (815)
+.+.... +... .-....|+++|-+.|-.++.
T Consensus 62 ~~d~~i~ikkvn~fsehnd~iei~fttiq~l~~d~~ 97 (812)
T COG3421 62 INDENIEIKKVNNFSEHNDAIEIYFTTIQGLFSDFT 97 (812)
T ss_pred cCCceeeeeeecccCccCCceEEEEeehHHHHHHHH
Confidence 2221111 1111 12334688899888877653
No 252
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.15 E-value=0.19 Score=53.97 Aligned_cols=43 Identities=37% Similarity=0.886 Sum_probs=38.7
Q ss_pred hhhhcCcccccCCCCccccCCchhhhhhHhhhccccCCCCCCCCC
Q 003502 557 VQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCS 601 (815)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~ 601 (815)
....|.+|.+....+.+..|+|.||..|+..... ....||.|+
T Consensus 12 ~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~--~~~~Cp~cr 54 (386)
T KOG2177|consen 12 EELTCPICLEYFREPVLLPCGHNFCRACLTRSWE--GPLSCPVCR 54 (386)
T ss_pred ccccChhhHHHhhcCccccccchHhHHHHHHhcC--CCcCCcccC
Confidence 3567999999999999999999999999988777 779999999
No 253
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=88.58 E-value=0.23 Score=47.40 Aligned_cols=17 Identities=24% Similarity=0.303 Sum_probs=12.8
Q ss_pred ccCCCEEEechhhhHHH
Q 003502 233 FSEFDFVITTYSIIEAD 249 (815)
Q Consensus 233 ~~~~~vvi~ty~~l~~~ 249 (815)
...+||||++|..+...
T Consensus 117 ~~~adivi~~y~yl~~~ 133 (174)
T PF06733_consen 117 AKNADIVICNYNYLFDP 133 (174)
T ss_dssp GGG-SEEEEETHHHHSH
T ss_pred cccCCEEEeCHHHHhhH
Confidence 45789999999988654
No 254
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.12 E-value=0.31 Score=48.65 Aligned_cols=53 Identities=25% Similarity=0.589 Sum_probs=42.6
Q ss_pred hhhcCcccccCCCCccccCCchhhhhhHhhhccccCCCCCCCCCCCcccccccC
Q 003502 558 QQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTAN 611 (815)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (815)
...|.+|......|+.+.|+|.||.-|+.-.... ....|++|+.++..+....
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~n-dk~~CavCR~pids~i~~~ 59 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKN-DKKTCAVCRFPIDSTIDFE 59 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhc-CCCCCceecCCCCcchhcc
Confidence 4679999999999999999999999999554433 3456999999987655443
No 255
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=87.99 E-value=1.3 Score=45.66 Aligned_cols=41 Identities=20% Similarity=0.067 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhc
Q 003502 125 YQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAK 165 (815)
Q Consensus 125 yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~ 165 (815)
.+..++..+......+.+-.+|.-+.|+|||..+-.++...
T Consensus 27 ~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 27 GHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 44455555444333322235678899999999886665543
No 256
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=87.88 E-value=1.3 Score=39.89 Aligned_cols=24 Identities=29% Similarity=0.163 Sum_probs=19.6
Q ss_pred CCeeeccCCCchHHHHHHHHHhcc
Q 003502 143 GGILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 143 g~ILade~GlGKTi~ai~li~~~~ 166 (815)
..+|.-++|+|||..+..++....
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccC
Confidence 457777999999999988777665
No 257
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.63 E-value=2.7 Score=49.79 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=20.4
Q ss_pred CCC-eeeccCCCchHHHHHHHHHhcc
Q 003502 142 RGG-ILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 142 ~g~-ILade~GlGKTi~ai~li~~~~ 166 (815)
... |+.-+.|+|||..|-.++..+.
T Consensus 38 ~HAyLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 38 HHAYLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcc
Confidence 344 7889999999999988877664
No 258
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.57 E-value=2.6 Score=46.61 Aligned_cols=23 Identities=30% Similarity=0.210 Sum_probs=19.6
Q ss_pred CeeeccCCCchHHHHHHHHHhcc
Q 003502 144 GILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 144 ~ILade~GlGKTi~ai~li~~~~ 166 (815)
.|+.-+.|+|||-.|..++..+.
T Consensus 43 ~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHhcC
Confidence 48899999999999988877654
No 259
>PRK08727 hypothetical protein; Validated
Probab=87.52 E-value=2.9 Score=42.03 Aligned_cols=24 Identities=38% Similarity=0.310 Sum_probs=18.4
Q ss_pred CCeeeccCCCchHHHHHHHHHhcc
Q 003502 143 GGILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 143 g~ILade~GlGKTi~ai~li~~~~ 166 (815)
..+|.-++|+|||-.+.++.....
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~ 66 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAE 66 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 468888999999988777665543
No 260
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=86.96 E-value=3.6 Score=45.32 Aligned_cols=54 Identities=20% Similarity=0.229 Sum_probs=32.9
Q ss_pred eeeEEEeecceeccCCCchHHHHHHhh-h-----cCcEEEeeCCCCCCchhhHHHHHHHhc
Q 003502 335 KWERIILDEAHFIKDRRSNTAKAVLAL-E-----SSYKWALSGTPLQNRVGELYSLVRFLQ 389 (815)
Q Consensus 335 ~~~~vIvDEaH~~kn~~s~~~~~~~~l-~-----~~~r~~LTgTPi~n~~~el~~ll~~L~ 389 (815)
.+++||||-+-+..... .....+..+ . ....++|++|+-.+.+.+++..+..++
T Consensus 299 ~~DlVlIDt~G~~~~d~-~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~ 358 (424)
T PRK05703 299 DCDVILIDTAGRSQRDK-RLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLP 358 (424)
T ss_pred CCCEEEEeCCCCCCCCH-HHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCC
Confidence 36899999987643322 222222222 2 234588999987777777776666554
No 261
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=86.78 E-value=1.8 Score=45.85 Aligned_cols=46 Identities=17% Similarity=0.108 Sum_probs=35.1
Q ss_pred cchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccc
Q 003502 121 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKRE 167 (815)
Q Consensus 121 ~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~ 167 (815)
.++|+|......++.+ .+-.+.-|+.-+.|.|||..|.+++..+.-
T Consensus 3 ~~yPWl~~~~~~~~~~-~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC 48 (328)
T PRK05707 3 EIYPWQQSLWQQLAGR-GRHPHAYLLHGPAGIGKRALAERLAAALLC 48 (328)
T ss_pred cCCCCcHHHHHHHHHC-CCcceeeeeECCCCCCHHHHHHHHHHHHcC
Confidence 3688888888777765 333345678899999999999988887764
No 262
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=86.74 E-value=4.4 Score=45.12 Aligned_cols=25 Identities=28% Similarity=0.094 Sum_probs=18.4
Q ss_pred CCCeeeccCCCchHHHHHHHHHhcc
Q 003502 142 RGGILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 142 ~g~ILade~GlGKTi~ai~li~~~~ 166 (815)
.+.+|--++|+|||..+-++.....
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~ 166 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIE 166 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHH
Confidence 4567888999999988766655443
No 263
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.98 E-value=4 Score=46.87 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=20.0
Q ss_pred CCeeeccCCCchHHHHHHHHHhcc
Q 003502 143 GGILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 143 g~ILade~GlGKTi~ai~li~~~~ 166 (815)
..|+.-..|+|||..|.+++..+.
T Consensus 39 AyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 448999999999999988777654
No 264
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.76 E-value=0.35 Score=49.79 Aligned_cols=49 Identities=27% Similarity=0.627 Sum_probs=42.3
Q ss_pred hhhhhcCcccccCCCCccccCCch-hhhhhHhhhccccCCCCCCCCCCCccc
Q 003502 556 HVQQVCGLCNDLADDPVVTNCGHA-FCKACLFDSSASKFVAKCPTCSIPLTV 606 (815)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~-~c~~c~~~~~~~~~~~~~~~~~~~~~~ 606 (815)
+-...|-+|.....+.+++.|-|. .|..|..... ....+||.||.++..
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr--~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLR--YQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHH--HhhcCCCccccchHh
Confidence 446789999999999999999997 9999997655 667899999998764
No 265
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=85.61 E-value=5.9 Score=44.33 Aligned_cols=26 Identities=23% Similarity=0.096 Sum_probs=20.2
Q ss_pred CCCeeeccCCCchHHHHHHHHHhccc
Q 003502 142 RGGILADEMGMGKTIQAIALVLAKRE 167 (815)
Q Consensus 142 ~g~ILade~GlGKTi~ai~li~~~~~ 167 (815)
+..+|--++|+|||..+-++......
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~ 174 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILE 174 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35678889999999998777666543
No 266
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=85.55 E-value=5 Score=41.29 Aligned_cols=43 Identities=23% Similarity=0.219 Sum_probs=27.3
Q ss_pred CccceeeEEEeecceeccCCC-chH---HHHHHhhhcCcE--EEeeCCC
Q 003502 331 LHSLKWERIILDEAHFIKDRR-SNT---AKAVLALESSYK--WALSGTP 373 (815)
Q Consensus 331 l~~~~~~~vIvDEaH~~kn~~-s~~---~~~~~~l~~~~r--~~LTgTP 373 (815)
|...+..++||||.|++-..+ .+. ..+++.|....+ +++.||+
T Consensus 141 lr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 141 LRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 556678899999999974433 333 334444433333 6778886
No 267
>PRK08181 transposase; Validated
Probab=85.36 E-value=4.6 Score=41.40 Aligned_cols=45 Identities=24% Similarity=0.003 Sum_probs=28.5
Q ss_pred chHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccc
Q 003502 122 LLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKRE 167 (815)
Q Consensus 122 L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~ 167 (815)
+-+-|..++..+..-.. ...+.+|.-++|+|||..+.++......
T Consensus 88 ~~~~~~~~L~~~~~~~~-~~~nlll~Gp~GtGKTHLa~Aia~~a~~ 132 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLA-KGANLLLFGPPGGGKSHLAAAIGLALIE 132 (269)
T ss_pred CCHHHHHHHHHHHHHHh-cCceEEEEecCCCcHHHHHHHHHHHHHH
Confidence 34456555543311111 2357889999999999998887765543
No 268
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=85.35 E-value=0.53 Score=34.21 Aligned_cols=44 Identities=30% Similarity=0.788 Sum_probs=34.6
Q ss_pred hhcCcccccCCCCccccCCchhhhhhHhhhccccCCCCCCCCCCCccc
Q 003502 559 QVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTV 606 (815)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~ 606 (815)
+.|-.|........++.|+|.+|..|. .......||.|..++..
T Consensus 8 ~~~~~~~~~~~~~~~~pCgH~I~~~~f----~~~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 8 QPCVFCGFVGTKGTVLPCGHLICDNCF----PGERYNGCPFCGTPFEF 51 (55)
T ss_pred eeEEEccccccccccccccceeecccc----ChhhccCCCCCCCcccC
Confidence 345566777778899999999999987 34457789999998764
No 269
>PRK06835 DNA replication protein DnaC; Validated
Probab=85.20 E-value=6.3 Score=41.78 Aligned_cols=47 Identities=11% Similarity=0.063 Sum_probs=31.2
Q ss_pred cchHHHHHHHHHHH---HHhhccCCCCeeeccCCCchHHHHHHHHHhccc
Q 003502 121 PLLRYQKEWLAWAL---KQEESAIRGGILADEMGMGKTIQAIALVLAKRE 167 (815)
Q Consensus 121 ~L~~yQ~~~~~~~~---~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~ 167 (815)
..+.++..++.++. ........+.+|.-++|+|||..+.+++.....
T Consensus 160 ~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~ 209 (329)
T PRK06835 160 SPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLD 209 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHH
Confidence 45666666555433 222233367888889999999999887776653
No 270
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=85.12 E-value=7.9 Score=40.99 Aligned_cols=23 Identities=35% Similarity=0.342 Sum_probs=18.8
Q ss_pred CCeeeccCCCchHHHHHHHHHhc
Q 003502 143 GGILADEMGMGKTIQAIALVLAK 165 (815)
Q Consensus 143 g~ILade~GlGKTi~ai~li~~~ 165 (815)
..+|.-+.|+|||..+-.++...
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999887766554
No 271
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.86 E-value=0.4 Score=47.79 Aligned_cols=50 Identities=36% Similarity=0.698 Sum_probs=40.0
Q ss_pred hhhhhhhhcCcccccCCCCccccCCchhhhhhHhhhccccCCCCCCCCCCCc
Q 003502 553 DAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPL 604 (815)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~ 604 (815)
+.+.+-..|.+|......|+++.|+|.||..|...... ....|..|....
T Consensus 236 D~~~~Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~q--k~~~c~vC~~~t 285 (313)
T KOG1813|consen 236 DIELLPFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQ--KGEKCYVCSQQT 285 (313)
T ss_pred CcccCCccccccccccccchhhcCCceeehhhhccccc--cCCcceeccccc
Confidence 45556677999999999999999999999999866543 246788887654
No 272
>PRK14974 cell division protein FtsY; Provisional
Probab=84.68 E-value=8.2 Score=40.97 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=17.3
Q ss_pred CeeeccCCCchHHHHHHHHHhcc
Q 003502 144 GILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 144 ~ILade~GlGKTi~ai~li~~~~ 166 (815)
.++.-.+|+|||-++..++..+.
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~ 165 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLK 165 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 45566999999998877766554
No 273
>PRK06893 DNA replication initiation factor; Validated
Probab=84.33 E-value=9 Score=38.36 Aligned_cols=23 Identities=13% Similarity=-0.149 Sum_probs=17.7
Q ss_pred CeeeccCCCchHHHHHHHHHhcc
Q 003502 144 GILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 144 ~ILade~GlGKTi~ai~li~~~~ 166 (815)
.+|.-++|+|||-.+.++.....
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~ 64 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYL 64 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 47888999999988877665543
No 274
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=84.13 E-value=0.74 Score=49.39 Aligned_cols=24 Identities=25% Similarity=0.146 Sum_probs=20.4
Q ss_pred CCeeeccCCCchHHHHHHHHHhcc
Q 003502 143 GGILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 143 g~ILade~GlGKTi~ai~li~~~~ 166 (815)
+.++.-+.|+|||..+.+++....
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 578889999999999988877654
No 275
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=84.12 E-value=6.6 Score=43.26 Aligned_cols=24 Identities=21% Similarity=0.080 Sum_probs=19.0
Q ss_pred CCeeeccCCCchHHHHHHHHHhcc
Q 003502 143 GGILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 143 g~ILade~GlGKTi~ai~li~~~~ 166 (815)
..+|--.+|+|||..+-++.....
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~ 161 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEIL 161 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHH
Confidence 457888999999999877766554
No 276
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=84.09 E-value=4.5 Score=48.19 Aligned_cols=58 Identities=14% Similarity=-0.047 Sum_probs=40.4
Q ss_pred ccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHH
Q 003502 120 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA 199 (815)
Q Consensus 120 ~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~l 199 (815)
..|-+-|+.++..++.. .+-.+|--..|+|||.++-+++......+ ..+++++|...
T Consensus 351 ~~Ls~~Q~~Av~~i~~s----~~~~il~G~aGTGKTtll~~i~~~~~~~g-------------------~~V~~~ApTg~ 407 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGS----GDIAVVVGRAGTGKSTMLKAAREAWEAAG-------------------YRVIGAALSGK 407 (744)
T ss_pred CCCCHHHHHHHHHHhcC----CCEEEEEecCCCCHHHHHHHHHHHHHhCC-------------------CeEEEEeCcHH
Confidence 45788999999776542 13457788999999988766554443221 37889999776
Q ss_pred H
Q 003502 200 V 200 (815)
Q Consensus 200 l 200 (815)
.
T Consensus 408 A 408 (744)
T TIGR02768 408 A 408 (744)
T ss_pred H
Confidence 4
No 277
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=83.77 E-value=15 Score=43.56 Aligned_cols=45 Identities=11% Similarity=0.007 Sum_probs=29.6
Q ss_pred chHHHHHHHHHHHHHhhc-cCC-CCe-eeccCCCchHHHHHHHHHhcc
Q 003502 122 LLRYQKEWLAWALKQEES-AIR-GGI-LADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 122 L~~yQ~~~~~~~~~~~~~-~~~-g~I-Lade~GlGKTi~ai~li~~~~ 166 (815)
-|+-|...+...+.-.-. ... ++| |.-.+|+|||.++-.++..+.
T Consensus 759 hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELq 806 (1164)
T PTZ00112 759 CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQ 806 (1164)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 577787777665544322 222 333 788999999999977766543
No 278
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=83.76 E-value=5.6 Score=47.02 Aligned_cols=95 Identities=12% Similarity=0.085 Sum_probs=67.7
Q ss_pred CcchHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHH----HHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceE
Q 003502 641 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLIN----YSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKI 716 (815)
Q Consensus 641 ~~s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~----~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v 716 (815)
.+|.|-....-.+...+. .+.+++|.+.....+..+. ..+...|+++..++|+++..+|...+....++ .+.|
T Consensus 291 TGSGKT~va~~~il~~~~--~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g-~~~I 367 (681)
T PRK10917 291 VGSGKTVVAALAALAAIE--AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASG-EADI 367 (681)
T ss_pred CCCcHHHHHHHHHHHHHH--cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCC-CCCE
Confidence 457777654444433333 3578999999877665544 44555689999999999999999999999877 7888
Q ss_pred EEEecCCCcccccccccCEEEE
Q 003502 717 FLMSLKAGGVALNLTVASHVFL 738 (815)
Q Consensus 717 lL~st~~g~~GlNL~~a~~vI~ 738 (815)
++.+.......+.+.....||+
T Consensus 368 vVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 368 VIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred EEchHHHhcccchhcccceEEE
Confidence 8866555555666666666554
No 279
>PRK04195 replication factor C large subunit; Provisional
Probab=83.42 E-value=9.8 Score=42.98 Aligned_cols=25 Identities=32% Similarity=0.227 Sum_probs=20.1
Q ss_pred CCCCeeeccCCCchHHHHHHHHHhc
Q 003502 141 IRGGILADEMGMGKTIQAIALVLAK 165 (815)
Q Consensus 141 ~~g~ILade~GlGKTi~ai~li~~~ 165 (815)
.+..||.-++|+|||..+-+++..+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3578999999999999887765543
No 280
>PRK05642 DNA replication initiation factor; Validated
Probab=83.40 E-value=5 Score=40.32 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=22.8
Q ss_pred eeEEEeecceeccCCCch---HHHHHHhh-hcCcEEEeeCC
Q 003502 336 WERIILDEAHFIKDRRSN---TAKAVLAL-ESSYKWALSGT 372 (815)
Q Consensus 336 ~~~vIvDEaH~~kn~~s~---~~~~~~~l-~~~~r~~LTgT 372 (815)
.+++|+|+.|.+.+.... .+..+..+ ....++++|+|
T Consensus 98 ~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 98 YELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred CCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 367999999998654321 22222222 24566888886
No 281
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=83.38 E-value=1.5 Score=44.46 Aligned_cols=53 Identities=25% Similarity=0.570 Sum_probs=46.6
Q ss_pred hhhhhhhhcCcccccCCCCccccCCchhhhhhHhhhccccCCCCCCCCCCCcc
Q 003502 553 DAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 605 (815)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~ 605 (815)
+.++....|.+|..-..-..+++|+|..|..|.+...+-.....|+.|+..+.
T Consensus 56 dtDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 56 DTDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred ccccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccc
Confidence 44555678999999888889999999999999999999999999999998764
No 282
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=83.37 E-value=2.5 Score=49.95 Aligned_cols=72 Identities=18% Similarity=0.132 Sum_probs=51.0
Q ss_pred ccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChH-
Q 003502 120 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVA- 198 (815)
Q Consensus 120 ~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~- 198 (815)
..+||.|.+.+.-+......+ +++++=..+|+|||+..++.+.......+ ++++|.++..
T Consensus 14 ~~~r~~Q~~~~~~v~~a~~~~-~~~~iEapTGtGKTl~yL~~al~~~~~~~------------------~~viist~t~~ 74 (654)
T COG1199 14 FEPRPEQREMAEAVAEALKGG-EGLLIEAPTGTGKTLAYLLPALAYAREEG------------------KKVIISTRTKA 74 (654)
T ss_pred CCCCHHHHHHHHHHHHHHcCC-CcEEEECCCCccHHHHHHHHHHHHHHHcC------------------CcEEEECCCHH
Confidence 458999999888876544443 46888889999999998877776654432 3667777755
Q ss_pred HHHHHHHHHHHh
Q 003502 199 AVTQWVSEINRF 210 (815)
Q Consensus 199 ll~qW~~Ei~~~ 210 (815)
+..|-.++...+
T Consensus 75 lq~q~~~~~~~~ 86 (654)
T COG1199 75 LQEQLLEEDLPI 86 (654)
T ss_pred HHHHHHHhhcch
Confidence 456766665543
No 283
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=83.28 E-value=4.4 Score=46.14 Aligned_cols=21 Identities=24% Similarity=0.534 Sum_probs=17.7
Q ss_pred CCccceeeEEEeecceeccCC
Q 003502 330 PLHSLKWERIILDEAHFIKDR 350 (815)
Q Consensus 330 ~l~~~~~~~vIvDEaH~~kn~ 350 (815)
.++...++++||||||.++..
T Consensus 347 siRGqtfDLLIVDEAqFIk~~ 367 (738)
T PHA03368 347 GIRGQDFNLLFVDEANFIRPD 367 (738)
T ss_pred CccCCcccEEEEechhhCCHH
Confidence 366778999999999999864
No 284
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.59 E-value=7.6 Score=42.01 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=19.2
Q ss_pred CeeeccCCCchHHHHHHHHHhcc
Q 003502 144 GILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 144 ~ILade~GlGKTi~ai~li~~~~ 166 (815)
.|+.-+.|+|||..|-+++..+.
T Consensus 41 ~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 41 WLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred EEEecCCCCCHHHHHHHHHHHhc
Confidence 47899999999999988776654
No 285
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=82.57 E-value=0.89 Score=36.07 Aligned_cols=28 Identities=32% Similarity=0.683 Sum_probs=22.5
Q ss_pred ccccCCchhhhhhHhhhccccCCCCCCCCC
Q 003502 572 VVTNCGHAFCKACLFDSSASKFVAKCPTCS 601 (815)
Q Consensus 572 ~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~ 601 (815)
.+..|||.|...|+..++.... .||.|+
T Consensus 46 ~~~~C~H~FH~~Ci~~Wl~~~~--~CP~CR 73 (73)
T PF12678_consen 46 VWGPCGHIFHFHCISQWLKQNN--TCPLCR 73 (73)
T ss_dssp EEETTSEEEEHHHHHHHHTTSS--B-TTSS
T ss_pred EecccCCCEEHHHHHHHHhcCC--cCCCCC
Confidence 4568999999999999886554 999996
No 286
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=82.51 E-value=0.61 Score=34.82 Aligned_cols=44 Identities=25% Similarity=0.563 Sum_probs=31.2
Q ss_pred hhhhhcCcccccCCCCccc-cCCchhhhhhHhhhccccCCCCCCC
Q 003502 556 HVQQVCGLCNDLADDPVVT-NCGHAFCKACLFDSSASKFVAKCPT 599 (815)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~-~~~~~~c~~c~~~~~~~~~~~~~~~ 599 (815)
.....|.+......+|+.. .|+|.|.+..+.++........||.
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 3445688888899999886 9999999999999998788888987
No 287
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=82.15 E-value=17 Score=40.40 Aligned_cols=25 Identities=16% Similarity=0.046 Sum_probs=19.4
Q ss_pred CCCeeeccCCCchHHHHHHHHHhcc
Q 003502 142 RGGILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 142 ~g~ILade~GlGKTi~ai~li~~~~ 166 (815)
...+|--++|+|||..+-++.....
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~ 155 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHH
Confidence 3567888999999998877666554
No 288
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=82.08 E-value=6.4 Score=47.17 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=20.2
Q ss_pred CCeeeccCCCchHHHHHHHHHhcc
Q 003502 143 GGILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 143 g~ILade~GlGKTi~ai~li~~~~ 166 (815)
..||.-..|+|||..+..|+..+.
T Consensus 39 a~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 39 AYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 458899999999999988877665
No 289
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=81.95 E-value=2.9 Score=44.80 Aligned_cols=47 Identities=19% Similarity=0.142 Sum_probs=29.8
Q ss_pred ccchHHHHHHHHHHHHHhhccC--CCCeeeccCCCchHHHHHHHHHhccc
Q 003502 120 TPLLRYQKEWLAWALKQEESAI--RGGILADEMGMGKTIQAIALVLAKRE 167 (815)
Q Consensus 120 ~~L~~yQ~~~~~~~~~~~~~~~--~g~ILade~GlGKTi~ai~li~~~~~ 167 (815)
..|.-|. .+...+.....++. +..|+.-+.|+|||..+..++..+..
T Consensus 23 ~~l~Gh~-~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 23 TRLFGHE-EAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred hhccCcH-HHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 3343333 34444444443321 24678999999999999888877764
No 290
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.89 E-value=8.3 Score=44.27 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=20.3
Q ss_pred CCeeeccCCCchHHHHHHHHHhccc
Q 003502 143 GGILADEMGMGKTIQAIALVLAKRE 167 (815)
Q Consensus 143 g~ILade~GlGKTi~ai~li~~~~~ 167 (815)
..|+.-..|+|||..+..++..+..
T Consensus 40 A~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3488889999999999888777653
No 291
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=81.73 E-value=11 Score=43.05 Aligned_cols=24 Identities=29% Similarity=0.203 Sum_probs=18.6
Q ss_pred CCeeeccCCCchHHHHHHHHHhcc
Q 003502 143 GGILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 143 g~ILade~GlGKTi~ai~li~~~~ 166 (815)
..+|.-.+|+|||..+-++.....
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~ 339 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYAR 339 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHH
Confidence 467788999999998777666544
No 292
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.50 E-value=11 Score=42.67 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=19.7
Q ss_pred CeeeccCCCchHHHHHHHHHhccc
Q 003502 144 GILADEMGMGKTIQAIALVLAKRE 167 (815)
Q Consensus 144 ~ILade~GlGKTi~ai~li~~~~~ 167 (815)
.|+.-..|+|||-.|-.++..+.-
T Consensus 41 ~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 41 YLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Confidence 478899999999999887776643
No 293
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=81.14 E-value=12 Score=35.15 Aligned_cols=44 Identities=20% Similarity=0.158 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhhcc-C-CCCeeeccCCCchHHHHHHHHHhccccc
Q 003502 126 QKEWLAWALKQEESA-I-RGGILADEMGMGKTIQAIALVLAKREIR 169 (815)
Q Consensus 126 Q~~~~~~~~~~~~~~-~-~g~ILade~GlGKTi~ai~li~~~~~~~ 169 (815)
|.+.+..+.....++ . +.-|+.-+.|.||+-.|.+++..+.-..
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~ 47 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSN 47 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 444455544444332 1 2347888899999999999998876543
No 294
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=81.01 E-value=9.7 Score=40.28 Aligned_cols=40 Identities=13% Similarity=0.098 Sum_probs=23.2
Q ss_pred eeEEEeecceeccCCCch--HHHHHHhhhcCcEEEeeCCCCC
Q 003502 336 WERIILDEAHFIKDRRSN--TAKAVLALESSYKWALSGTPLQ 375 (815)
Q Consensus 336 ~~~vIvDEaH~~kn~~s~--~~~~~~~l~~~~r~~LTgTPi~ 375 (815)
..+|||||+|.+.....+ ....+.......++++|++...
T Consensus 101 ~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 101 GKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKN 142 (316)
T ss_pred CeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChh
Confidence 467999999998332211 1111222345567888887544
No 295
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=80.36 E-value=8.2 Score=44.68 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=19.8
Q ss_pred CeeeccCCCchHHHHHHHHHhccc
Q 003502 144 GILADEMGMGKTIQAIALVLAKRE 167 (815)
Q Consensus 144 ~ILade~GlGKTi~ai~li~~~~~ 167 (815)
.|+.-+.|+|||..|-.++..+.-
T Consensus 41 yLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred EEEECCCCCCHHHHHHHHHHhhhh
Confidence 478899999999999888776653
No 296
>PRK06921 hypothetical protein; Provisional
Probab=80.33 E-value=12 Score=38.53 Aligned_cols=27 Identities=22% Similarity=0.031 Sum_probs=21.5
Q ss_pred CCCCeeeccCCCchHHHHHHHHHhccc
Q 003502 141 IRGGILADEMGMGKTIQAIALVLAKRE 167 (815)
Q Consensus 141 ~~g~ILade~GlGKTi~ai~li~~~~~ 167 (815)
..+.+|.-++|+|||..+.+++.....
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~ 143 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMR 143 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhh
Confidence 356788889999999998887776543
No 297
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=80.25 E-value=2.8 Score=47.63 Aligned_cols=69 Identities=26% Similarity=0.317 Sum_probs=51.8
Q ss_pred cchHHHHHHHHHHHHHhh-------ccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEE
Q 003502 121 PLLRYQKEWLAWALKQEE-------SAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLV 193 (815)
Q Consensus 121 ~L~~yQ~~~~~~~~~~~~-------~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LI 193 (815)
...+..++.+.|.+.+.. ...+|.||.-.+|+|||+.|-++..... .+++-
T Consensus 249 ~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~----------------------~~fi~ 306 (494)
T COG0464 249 EAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESR----------------------SRFIS 306 (494)
T ss_pred HHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCC----------------------CeEEE
Confidence 356677788888776554 3445889999999999999977776433 35666
Q ss_pred EcChHHHHHHHHHHHHhc
Q 003502 194 ICPVAAVTQWVSEINRFT 211 (815)
Q Consensus 194 V~P~~ll~qW~~Ei~~~~ 211 (815)
|-...++..|.-|..+..
T Consensus 307 v~~~~l~sk~vGesek~i 324 (494)
T COG0464 307 VKGSELLSKWVGESEKNI 324 (494)
T ss_pred eeCHHHhccccchHHHHH
Confidence 666699999999988764
No 298
>PRK05580 primosome assembly protein PriA; Validated
Probab=80.20 E-value=15 Score=43.44 Aligned_cols=97 Identities=12% Similarity=0.098 Sum_probs=71.4
Q ss_pred cCcchHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHh-CCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEE
Q 003502 640 FQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK-SGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFL 718 (815)
Q Consensus 640 ~~~s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~-~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL 718 (815)
..+|.|-...+..+...+.. +.++||.+.....+..+.+.|.. .|..+..++|+++..+|.+...+...+ ...|++
T Consensus 170 ~TGSGKT~v~l~~i~~~l~~--g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g-~~~IVV 246 (679)
T PRK05580 170 VTGSGKTEVYLQAIAEVLAQ--GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRG-EAKVVI 246 (679)
T ss_pred CCCChHHHHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcC-CCCEEE
Confidence 35688988888877777654 47899999999888888877765 488899999999999998888887776 677777
Q ss_pred EecCCCcccccccccCEEEEeCC
Q 003502 719 MSLKAGGVALNLTVASHVFLMDP 741 (815)
Q Consensus 719 ~st~~g~~GlNL~~a~~vI~~d~ 741 (815)
.+..+. =+.+.....||+-+-
T Consensus 247 gTrsal--~~p~~~l~liVvDEe 267 (679)
T PRK05580 247 GARSAL--FLPFKNLGLIIVDEE 267 (679)
T ss_pred eccHHh--cccccCCCEEEEECC
Confidence 543222 244556666665553
No 299
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=80.08 E-value=10 Score=40.84 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=17.0
Q ss_pred eeeccCCCchHHHHHHHHHhcc
Q 003502 145 ILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 145 ILade~GlGKTi~ai~li~~~~ 166 (815)
.|.-..|+|||.++..++..+.
T Consensus 245 ~LVGptGvGKTTTiaKLA~~L~ 266 (436)
T PRK11889 245 ALIGPTGVGKTTTLAKMAWQFH 266 (436)
T ss_pred EEECCCCCcHHHHHHHHHHHHH
Confidence 4566799999999877766554
No 300
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.05 E-value=0.95 Score=48.51 Aligned_cols=46 Identities=37% Similarity=0.787 Sum_probs=39.9
Q ss_pred hhhcCcccccCCCCccccCCchhhhhhHhhhccccCCCCCCCCCCCcc
Q 003502 558 QQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 605 (815)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~ 605 (815)
...|.+|......|+.+.|||.||..|+.. ..+....||.|+..+.
T Consensus 84 ef~c~vc~~~l~~pv~tpcghs~c~~Cl~r--~ld~~~~cp~Cr~~l~ 129 (398)
T KOG4159|consen 84 EFECCVCSRALYPPVVTPCGHSFCLECLDR--SLDQETECPLCRDELV 129 (398)
T ss_pred hhhhhhhHhhcCCCccccccccccHHHHHH--HhccCCCCcccccccc
Confidence 456999999999999999999999999877 4448899999998765
No 301
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=79.93 E-value=33 Score=39.61 Aligned_cols=41 Identities=22% Similarity=0.305 Sum_probs=26.6
Q ss_pred CccceeeEEEeecceeccCCCchHHHHHHh-hh-cCcEEEeeCCCC
Q 003502 331 LHSLKWERIILDEAHFIKDRRSNTAKAVLA-LE-SSYKWALSGTPL 374 (815)
Q Consensus 331 l~~~~~~~vIvDEaH~~kn~~s~~~~~~~~-l~-~~~r~~LTgTPi 374 (815)
.+...+++||||||+.+..+ ...++.- +. ...++++.-||.
T Consensus 290 ~RG~~~DLLIVDEAAfI~~~---~l~aIlP~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 290 ARGQNPDLVIVDEAAFVNPG---ALLSVLPLMAVKGTKQIHISSPV 332 (752)
T ss_pred cCCCCCCEEEEECcccCCHH---HHHHHHHHHccCCCceEEEeCCC
Confidence 45456899999999999763 2222332 32 466677766775
No 302
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=79.48 E-value=8.9 Score=42.60 Aligned_cols=25 Identities=36% Similarity=0.157 Sum_probs=19.4
Q ss_pred CCCeeeccCCCchHHHHHHHHHhcc
Q 003502 142 RGGILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 142 ~g~ILade~GlGKTi~ai~li~~~~ 166 (815)
++.+|--++|+|||-.+-++.....
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~ 166 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALR 166 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4567888999999998877666554
No 303
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=79.42 E-value=9.2 Score=41.33 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=18.5
Q ss_pred CeeeccCCCchHHHHHHHHHhcc
Q 003502 144 GILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 144 ~ILade~GlGKTi~ai~li~~~~ 166 (815)
.+|.-++|.|||..++.++....
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a 107 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLA 107 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 36788999999999887776654
No 304
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.42 E-value=10 Score=43.52 Aligned_cols=24 Identities=25% Similarity=0.191 Sum_probs=20.1
Q ss_pred CeeeccCCCchHHHHHHHHHhccc
Q 003502 144 GILADEMGMGKTIQAIALVLAKRE 167 (815)
Q Consensus 144 ~ILade~GlGKTi~ai~li~~~~~ 167 (815)
.|+.-..|+|||-.|..++..+.-
T Consensus 38 ~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 38 YLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcc
Confidence 478899999999999888876653
No 305
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.35 E-value=12 Score=42.37 Aligned_cols=96 Identities=11% Similarity=0.070 Sum_probs=69.1
Q ss_pred cCcchHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHh-CCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEE
Q 003502 640 FQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK-SGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFL 718 (815)
Q Consensus 640 ~~~s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~-~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL 718 (815)
..+|.|-...+..+...++. +.++||.+........+.+.|+. .|..+..++|+++..+|.+...+-.++ ...|++
T Consensus 5 ~TGsGKT~v~l~~i~~~l~~--g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g-~~~IVV 81 (505)
T TIGR00595 5 VTGSGKTEVYLQAIEKVLAL--GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNG-EILVVI 81 (505)
T ss_pred CCCCCHHHHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcC-CCCEEE
Confidence 35688988888888777654 46899999998888777777765 478899999999999998887776665 667766
Q ss_pred EecCCCcccccccccCEEEEeC
Q 003502 719 MSLKAGGVALNLTVASHVFLMD 740 (815)
Q Consensus 719 ~st~~g~~GlNL~~a~~vI~~d 740 (815)
.+..+. =+-+.....||+=+
T Consensus 82 GTrsal--f~p~~~l~lIIVDE 101 (505)
T TIGR00595 82 GTRSAL--FLPFKNLGLIIVDE 101 (505)
T ss_pred CChHHH--cCcccCCCEEEEEC
Confidence 443322 12344555566544
No 306
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=78.88 E-value=1.2 Score=44.01 Aligned_cols=45 Identities=38% Similarity=0.813 Sum_probs=35.3
Q ss_pred hhhcCcccccCCCCccc-cCCchhhhhhHhhhccccCCCCCCCCCCC
Q 003502 558 QQVCGLCNDLADDPVVT-NCGHAFCKACLFDSSASKFVAKCPTCSIP 603 (815)
Q Consensus 558 ~~~~~~~~~~~~~~~~~-~~~~~~c~~c~~~~~~~~~~~~~~~~~~~ 603 (815)
...|.+|..+...++.+ .|+|.||..|+...+. +-.-.||+|...
T Consensus 274 ~LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~-dsDf~CpnC~rk 319 (427)
T COG5222 274 SLKCPLCHCLLRNPMKTPCCGHTFCDECIGTALL-DSDFKCPNCSRK 319 (427)
T ss_pred cccCcchhhhhhCcccCccccchHHHHHHhhhhh-hccccCCCcccc
Confidence 36799999999988887 7899999999965443 224579999764
No 307
>PRK11054 helD DNA helicase IV; Provisional
Probab=78.66 E-value=2.5 Score=49.64 Aligned_cols=70 Identities=16% Similarity=0.012 Sum_probs=46.6
Q ss_pred ccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHH
Q 003502 120 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA 199 (815)
Q Consensus 120 ~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~l 199 (815)
.+|-+-|.+++.... ...++--..|+|||.++++-+.++...... ....+|+++...-
T Consensus 195 ~~L~~~Q~~av~~~~-------~~~lV~agaGSGKT~vl~~r~ayLl~~~~~---------------~~~~IL~ltft~~ 252 (684)
T PRK11054 195 SPLNPSQARAVVNGE-------DSLLVLAGAGSGKTSVLVARAGWLLARGQA---------------QPEQILLLAFGRQ 252 (684)
T ss_pred CCCCHHHHHHHhCCC-------CCeEEEEeCCCCHHHHHHHHHHHHHHhCCC---------------CHHHeEEEeccHH
Confidence 357788877775321 233444469999999999888777643322 1258999999877
Q ss_pred HHHHHHH-HHHhc
Q 003502 200 VTQWVSE-INRFT 211 (815)
Q Consensus 200 l~qW~~E-i~~~~ 211 (815)
..+..+| |...+
T Consensus 253 AA~em~eRL~~~l 265 (684)
T PRK11054 253 AAEEMDERIRERL 265 (684)
T ss_pred HHHHHHHHHHHhc
Confidence 7666655 55443
No 308
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=78.58 E-value=6.2 Score=37.59 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=20.5
Q ss_pred eeEEEeecceeccCCCchHHHHHHhhh-cCcEEEeeC
Q 003502 336 WERIILDEAHFIKDRRSNTAKAVLALE-SSYKWALSG 371 (815)
Q Consensus 336 ~~~vIvDEaH~~kn~~s~~~~~~~~l~-~~~r~~LTg 371 (815)
++.|+|||||.+. ..+...+..+. ....+++.|
T Consensus 77 ~dvI~IDEaQFf~---~~i~~l~~~~~~~g~~Vi~~G 110 (176)
T PF00265_consen 77 YDVIGIDEAQFFD---EQIVQLVEILANKGIPVICAG 110 (176)
T ss_dssp CSEEEESSGGGST---TTHHHHHHHHHHTT-EEEEEE
T ss_pred CCEEEEechHhhH---HHHHHHHHHHHhCCCeEEEEe
Confidence 7899999999996 23444455443 344444444
No 309
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=78.35 E-value=10 Score=41.27 Aligned_cols=38 Identities=16% Similarity=0.275 Sum_probs=24.1
Q ss_pred eeEEEeecceeccCCCchHHHHHHhh-hcCcEEEeeCCCCCC
Q 003502 336 WERIILDEAHFIKDRRSNTAKAVLAL-ESSYKWALSGTPLQN 376 (815)
Q Consensus 336 ~~~vIvDEaH~~kn~~s~~~~~~~~l-~~~~r~~LTgTPi~n 376 (815)
+|+|.+||++-+-. ..+..|..+ ..+.|+..-+--+||
T Consensus 296 yD~ilIDE~QDFP~---~F~~Lcf~~tkd~KrlvyAyDelQn 334 (660)
T COG3972 296 YDYILIDESQDFPQ---SFIDLCFMVTKDKKRLVYAYDELQN 334 (660)
T ss_pred ccEEEecccccCCH---HHHHHHHHHhcCcceEEEehHhhhc
Confidence 68999999999843 245555555 445666654444444
No 310
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.32 E-value=0.65 Score=47.51 Aligned_cols=49 Identities=31% Similarity=0.718 Sum_probs=37.9
Q ss_pred hhhhhcCcccccCC-CCccccCCchhhhhhHhhhccccCCCCCCCCCCCcc
Q 003502 556 HVQQVCGLCNDLAD-DPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 605 (815)
Q Consensus 556 ~~~~~~~~~~~~~~-~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~ 605 (815)
.....|.+|.++.. ......|+|-||..|+...+.. ....||.|+..+.
T Consensus 41 ~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~-gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRS-GNNECPTCRKKLV 90 (381)
T ss_pred hhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh-cCCCCchHHhhcc
Confidence 44567999998764 4567899999999999876654 4568999987654
No 311
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=78.03 E-value=5.7 Score=44.69 Aligned_cols=20 Identities=35% Similarity=0.722 Sum_probs=17.7
Q ss_pred CccceeeEEEeecceeccCC
Q 003502 331 LHSLKWERIILDEAHFIKDR 350 (815)
Q Consensus 331 l~~~~~~~vIvDEaH~~kn~ 350 (815)
++...|++++|||||.++..
T Consensus 295 iRGQ~fnll~VDEA~FI~~~ 314 (668)
T PHA03372 295 IRGQNFHLLLVDEAHFIKKD 314 (668)
T ss_pred ccCCCCCEEEEehhhccCHH
Confidence 67778999999999999865
No 312
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=77.94 E-value=17 Score=33.54 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=16.9
Q ss_pred eeeccCCCchHHHHHHHHHhcc
Q 003502 145 ILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 145 ILade~GlGKTi~ai~li~~~~ 166 (815)
+|.-+.|+|||..+..++....
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHH
Confidence 4555799999999977776654
No 313
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=77.64 E-value=2.9 Score=44.14 Aligned_cols=67 Identities=16% Similarity=0.101 Sum_probs=41.3
Q ss_pred chHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHH-H
Q 003502 122 LLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA-V 200 (815)
Q Consensus 122 L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~l-l 200 (815)
|-+-|..++.+ .. +..++--..|+|||.+++.-++.+...... +...+|+|+++.. .
T Consensus 1 l~~eQ~~~i~~-~~------~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~---------------~~~~Il~lTft~~aa 58 (315)
T PF00580_consen 1 LTDEQRRIIRS-TE------GPLLVNAGAGSGKTTTLLERIAYLLYEGGV---------------PPERILVLTFTNAAA 58 (315)
T ss_dssp S-HHHHHHHHS--S------SEEEEEE-TTSSHHHHHHHHHHHHHHTSSS---------------TGGGEEEEESSHHHH
T ss_pred CCHHHHHHHhC-CC------CCEEEEeCCCCCchHHHHHHHHHhhccccC---------------ChHHheecccCHHHH
Confidence 34668777766 22 344555569999999998877776654431 2258999999654 3
Q ss_pred HHHHHHHHHh
Q 003502 201 TQWVSEINRF 210 (815)
Q Consensus 201 ~qW~~Ei~~~ 210 (815)
..-..-+...
T Consensus 59 ~e~~~ri~~~ 68 (315)
T PF00580_consen 59 QEMRERIREL 68 (315)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4444444443
No 314
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=77.32 E-value=11 Score=44.15 Aligned_cols=95 Identities=12% Similarity=0.085 Sum_probs=64.8
Q ss_pred CcchHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHH----HhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceE
Q 003502 641 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSL----HKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKI 716 (815)
Q Consensus 641 ~~s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L----~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v 716 (815)
.+|.|-....-.+...+. .+.+++|.+.....+..+.+.+ ...|+++..++|+++..+|...+....++ .+.|
T Consensus 265 TGSGKT~va~l~il~~~~--~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g-~~~I 341 (630)
T TIGR00643 265 VGSGKTLVAALAMLAAIE--AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASG-QIHL 341 (630)
T ss_pred CCCcHHHHHHHHHHHHHH--cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCC-CCCE
Confidence 457777654333333333 3468999998877666555444 44589999999999999999998888876 6777
Q ss_pred EEEecCCCcccccccccCEEEE
Q 003502 717 FLMSLKAGGVALNLTVASHVFL 738 (815)
Q Consensus 717 lL~st~~g~~GlNL~~a~~vI~ 738 (815)
++.+.......+.+.....||+
T Consensus 342 iVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 342 VVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred EEecHHHHhccccccccceEEE
Confidence 7766555555555655555544
No 315
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=76.86 E-value=21 Score=41.51 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=19.9
Q ss_pred CCeeeccCCCchHHHHHHHHHhcc
Q 003502 143 GGILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 143 g~ILade~GlGKTi~ai~li~~~~ 166 (815)
+.|+.-..|+|||..|..++..+.
T Consensus 40 a~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Confidence 458899999999999988877654
No 316
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=76.61 E-value=11 Score=36.03 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=23.9
Q ss_pred eeEEEeecceeccCCCchHHHHHHhhhc--CcEEEeeCC
Q 003502 336 WERIILDEAHFIKDRRSNTAKAVLALES--SYKWALSGT 372 (815)
Q Consensus 336 ~~~vIvDEaH~~kn~~s~~~~~~~~l~~--~~r~~LTgT 372 (815)
.+.|.|||||.+.. .....+..+.. ..++++.|.
T Consensus 83 ~~~v~IDEaQF~~~---~~v~~l~~lad~lgi~Vi~~GL 118 (201)
T COG1435 83 VDCVLIDEAQFFDE---ELVYVLNELADRLGIPVICYGL 118 (201)
T ss_pred cCEEEEehhHhCCH---HHHHHHHHHHhhcCCEEEEecc
Confidence 67899999999865 35556666644 456666663
No 317
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.21 E-value=16 Score=39.99 Aligned_cols=25 Identities=32% Similarity=0.310 Sum_probs=20.5
Q ss_pred CCeeeccCCCchHHHHHHHHHhccc
Q 003502 143 GGILADEMGMGKTIQAIALVLAKRE 167 (815)
Q Consensus 143 g~ILade~GlGKTi~ai~li~~~~~ 167 (815)
.-|+.-+.|+|||..|.+++..+.-
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4678889999999999888776653
No 318
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.88 E-value=1.1 Score=51.18 Aligned_cols=48 Identities=29% Similarity=0.633 Sum_probs=40.8
Q ss_pred hhhhhhcCcccccCCC-----CccccCCchhhhhhHhhhccccCCCCCCCCCCCc
Q 003502 555 EHVQQVCGLCNDLADD-----PVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPL 604 (815)
Q Consensus 555 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~ 604 (815)
......|.+|.+.... +.++.|+|.||..|+..+... .-.||.|+..+
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er--~qtCP~CR~~~ 340 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER--QQTCPTCRTVL 340 (543)
T ss_pred hhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH--hCcCCcchhhh
Confidence 3446789999988766 789999999999999998877 78999999843
No 319
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=75.83 E-value=5.4 Score=38.82 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=19.0
Q ss_pred eeeccCCCchHHHHHHHHHhcccc
Q 003502 145 ILADEMGMGKTIQAIALVLAKREI 168 (815)
Q Consensus 145 ILade~GlGKTi~ai~li~~~~~~ 168 (815)
++.-.+|.|||-++.-+++++...
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~ 28 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLK 28 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEECCCCCchHhHHHHHHHHHhhc
Confidence 466689999999998777777654
No 320
>CHL00095 clpC Clp protease ATP binding subunit
Probab=75.69 E-value=9.3 Score=46.31 Aligned_cols=25 Identities=36% Similarity=0.313 Sum_probs=20.4
Q ss_pred CCCeeeccCCCchHHHHHHHHHhcc
Q 003502 142 RGGILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 142 ~g~ILade~GlGKTi~ai~li~~~~ 166 (815)
.+.||.-++|.|||..+-+++....
T Consensus 201 ~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHH
Confidence 4778999999999999977766543
No 321
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=75.58 E-value=2.8 Score=38.96 Aligned_cols=53 Identities=19% Similarity=0.251 Sum_probs=31.2
Q ss_pred ccceeeEEEeecceeccCCC----chHHHHHHhhhcCcEEEeeCCCCCCchhhHHHHHHH
Q 003502 332 HSLKWERIILDEAHFIKDRR----SNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRF 387 (815)
Q Consensus 332 ~~~~~~~vIvDEaH~~kn~~----s~~~~~~~~l~~~~r~~LTgTPi~n~~~el~~ll~~ 387 (815)
..-.+|+||+||.=..-+.. ......+..-+..--++|||-=.+ .+|..+.++
T Consensus 92 ~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p---~~l~e~AD~ 148 (159)
T cd00561 92 ASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP---KELIEAADL 148 (159)
T ss_pred hcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC---HHHHHhCce
Confidence 34468999999998875433 223333333233445999997544 444444443
No 322
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=75.33 E-value=10 Score=45.19 Aligned_cols=63 Identities=10% Similarity=0.209 Sum_probs=43.6
Q ss_pred CceEEEEccCh----hHHHHHHHHHHhCC-CcEEE-EecCCCHHHHHHHHHhhcCCCCceEEEEecCCCc
Q 003502 662 SAKGIVFSQFT----SFLDLINYSLHKSG-VNCVQ-LVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGG 725 (815)
Q Consensus 662 ~~KvIIFs~~~----~~~~~l~~~L~~~g-~~~~~-i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~ 725 (815)
+.|++|-...+ ++.+.|..+....| ..... +||.++..++++++++|.+| +..|++.+++-..
T Consensus 125 gkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~g-dfdIlitTs~FL~ 193 (1187)
T COG1110 125 GKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESG-DFDILITTSQFLS 193 (1187)
T ss_pred CCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcC-CccEEEEeHHHHH
Confidence 45665554444 34455555555555 44333 89999999999999999998 8899887755444
No 323
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.27 E-value=1.7 Score=45.65 Aligned_cols=49 Identities=27% Similarity=0.822 Sum_probs=38.9
Q ss_pred hhhcCcccccCCCCc--------cccCCchhhhhhHhhhccccC-----CCCCCCCCCCccc
Q 003502 558 QQVCGLCNDLADDPV--------VTNCGHAFCKACLFDSSASKF-----VAKCPTCSIPLTV 606 (815)
Q Consensus 558 ~~~~~~~~~~~~~~~--------~~~~~~~~c~~c~~~~~~~~~-----~~~~~~~~~~~~~ 606 (815)
+..|.+|.+...+.. +..|.|.||..|+..+..... ...||.|+.....
T Consensus 161 ~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 161 EKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 567999987665444 478999999999999885544 7999999988653
No 324
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=75.25 E-value=3.6 Score=33.28 Aligned_cols=34 Identities=26% Similarity=0.681 Sum_probs=29.4
Q ss_pred ccccCCchhhhhhHhhhcccc-CCCCCCCCCCCcc
Q 003502 572 VVTNCGHAFCKACLFDSSASK-FVAKCPTCSIPLT 605 (815)
Q Consensus 572 ~~~~~~~~~c~~c~~~~~~~~-~~~~~~~~~~~~~ 605 (815)
+...|+|.|-.-|+.+++.+. ....||+||.++.
T Consensus 48 v~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 48 VWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred eeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 567899999999999998874 4789999998865
No 325
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=74.92 E-value=1.1 Score=42.20 Aligned_cols=55 Identities=15% Similarity=0.222 Sum_probs=33.4
Q ss_pred CccceeeEEEeecceeccCCC----chHHHHHHhhhcCcEEEeeCCCCCCchhhHHHHHHHh
Q 003502 331 LHSLKWERIILDEAHFIKDRR----SNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFL 388 (815)
Q Consensus 331 l~~~~~~~vIvDEaH~~kn~~----s~~~~~~~~l~~~~r~~LTgTPi~n~~~el~~ll~~L 388 (815)
+..-.||+||+||.-.+-+.. ......+..-+..--++|||.=. +.+|..+.+++
T Consensus 93 l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~---p~~l~e~AD~V 151 (173)
T TIGR00708 93 LADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC---PQDLLELADLV 151 (173)
T ss_pred HhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC---CHHHHHhCcee
Confidence 444579999999998765544 22333333333444699999854 45555554443
No 326
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=74.89 E-value=15 Score=41.43 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=21.0
Q ss_pred CCCeeeccCCCchHHHHHHHHHhcc
Q 003502 142 RGGILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 142 ~g~ILade~GlGKTi~ai~li~~~~ 166 (815)
+..|+.-+.|+|||..|-.++..+.
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4678999999999999988777664
No 327
>PRK09183 transposase/IS protein; Provisional
Probab=74.62 E-value=14 Score=37.67 Aligned_cols=24 Identities=38% Similarity=0.365 Sum_probs=18.7
Q ss_pred CCCeeeccCCCchHHHHHHHHHhc
Q 003502 142 RGGILADEMGMGKTIQAIALVLAK 165 (815)
Q Consensus 142 ~g~ILade~GlGKTi~ai~li~~~ 165 (815)
.+.+|.-++|+|||..+.++....
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHH
Confidence 466777799999999987775543
No 328
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=74.57 E-value=14 Score=41.59 Aligned_cols=43 Identities=23% Similarity=0.083 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHH----hhccCCCCeeeccCCCchHHHHHHHHHhcc
Q 003502 124 RYQKEWLAWALKQ----EESAIRGGILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 124 ~yQ~~~~~~~~~~----~~~~~~g~ILade~GlGKTi~ai~li~~~~ 166 (815)
|+|+..+..++-- ..+.++-++|.-.=|-|||..+.+++++..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l 47 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYML 47 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHH
Confidence 6787666554421 112334456666789999999876665544
No 329
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=73.76 E-value=10 Score=45.90 Aligned_cols=40 Identities=23% Similarity=0.206 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhc-cCCCCeeeccCCCchHHHHHHHHHhc
Q 003502 126 QKEWLAWALKQEES-AIRGGILADEMGMGKTIQAIALVLAK 165 (815)
Q Consensus 126 Q~~~~~~~~~~~~~-~~~g~ILade~GlGKTi~ai~li~~~ 165 (815)
|..-+.+++..+.+ ...+.||.-++|.|||..+=+++...
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHH
Confidence 33346666654333 23577899999999999986666554
No 330
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=73.59 E-value=11 Score=43.17 Aligned_cols=73 Identities=21% Similarity=0.107 Sum_probs=53.3
Q ss_pred ccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcC-hH
Q 003502 120 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VA 198 (815)
Q Consensus 120 ~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P-~~ 198 (815)
..|...|+.+.+.++.. +=.|+--.+|+|||++++-.+..++.....+. ..-|+||||= ++
T Consensus 377 ~ildsSq~~A~qs~lty-----elsliqgppGTgkt~vtlkav~tLL~n~s~~~-------------~~epIlvvC~Tnh 438 (1025)
T KOG1807|consen 377 VILDSSQQFAKQSKLTY-----ELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYT-------------EPEPILVVCLTNH 438 (1025)
T ss_pred eeecHHHHHHHHHHhhh-----hhheeecCCCCCceeehHHHHHHHHhcccccc-------------cccceeeeehhhH
Confidence 45677899999888876 44577789999999998777666654432211 2259999999 67
Q ss_pred HHHHHHHHHHHh
Q 003502 199 AVTQWVSEINRF 210 (815)
Q Consensus 199 ll~qW~~Ei~~~ 210 (815)
.+.|.-.-+-.+
T Consensus 439 avdq~ligiy~~ 450 (1025)
T KOG1807|consen 439 AVDQYLIGIYYH 450 (1025)
T ss_pred HHHHHHHHHHhc
Confidence 789988777643
No 331
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=73.09 E-value=6.8 Score=37.59 Aligned_cols=55 Identities=16% Similarity=0.211 Sum_probs=33.3
Q ss_pred CccceeeEEEeecceeccCCC----chHHHHHHhhhcCcEEEeeCCCCCCchhhHHHHHHHh
Q 003502 331 LHSLKWERIILDEAHFIKDRR----SNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFL 388 (815)
Q Consensus 331 l~~~~~~~vIvDEaH~~kn~~----s~~~~~~~~l~~~~r~~LTgTPi~n~~~el~~ll~~L 388 (815)
+..-.|++||+||.-.+-+.. ......+..-+..--++|||-=. +.+|..+.+++
T Consensus 111 l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~---p~~Lie~ADlV 169 (191)
T PRK05986 111 LADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA---PRELIEAADLV 169 (191)
T ss_pred HhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC---CHHHHHhCchh
Confidence 444578999999998876644 22333333323344699999754 44555544443
No 332
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=72.91 E-value=15 Score=42.49 Aligned_cols=25 Identities=32% Similarity=0.239 Sum_probs=20.8
Q ss_pred CCeeeccCCCchHHHHHHHHHhccc
Q 003502 143 GGILADEMGMGKTIQAIALVLAKRE 167 (815)
Q Consensus 143 g~ILade~GlGKTi~ai~li~~~~~ 167 (815)
..||.-..|+|||..|..++..+..
T Consensus 48 a~L~~Gp~GvGKTt~Ar~lAk~L~c 72 (598)
T PRK09111 48 AFMLTGVRGVGKTTTARILARALNY 72 (598)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhCc
Confidence 5678889999999999888877653
No 333
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.74 E-value=19 Score=40.40 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=20.0
Q ss_pred CCCeeeccCCCchHHHHHHHHHhcc
Q 003502 142 RGGILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 142 ~g~ILade~GlGKTi~ai~li~~~~ 166 (815)
+..|+.-..|+|||-.|..++..+.
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk~Ln 60 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISLCLN 60 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHHHHc
Confidence 4678999999999999977766543
No 334
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=72.67 E-value=18 Score=41.56 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=19.7
Q ss_pred CeeeccCCCchHHHHHHHHHhcc
Q 003502 144 GILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 144 ~ILade~GlGKTi~ai~li~~~~ 166 (815)
.|+.-+.|.|||..|-+++..+.
T Consensus 41 yLf~Gp~G~GKTt~Ar~lAk~L~ 63 (563)
T PRK06647 41 YIFSGPRGVGKTSSARAFARCLN 63 (563)
T ss_pred EEEECCCCCCHHHHHHHHHHhhc
Confidence 57889999999999988877665
No 335
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=72.56 E-value=4.1 Score=44.34 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=21.1
Q ss_pred CCCeeeccCCCchHHHHHHHHHhccc
Q 003502 142 RGGILADEMGMGKTIQAIALVLAKRE 167 (815)
Q Consensus 142 ~g~ILade~GlGKTi~ai~li~~~~~ 167 (815)
++.|+.-+.|+|||..|.+++..+.-
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~lA~~l~c 62 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARAFAAALQC 62 (394)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 35678899999999999888776543
No 336
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=72.47 E-value=26 Score=29.51 Aligned_cols=57 Identities=9% Similarity=-0.031 Sum_probs=39.8
Q ss_pred ceEEEEccC------hhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEE
Q 003502 663 AKGIVFSQF------TSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLM 719 (815)
Q Consensus 663 ~KvIIFs~~------~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~ 719 (815)
++|+||+.. =.....+..+|...|++|..++=......++.+........-+.||+-
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~ 74 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVK 74 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEEC
Confidence 699999753 345677888999999999888765556666666655544434566653
No 337
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.44 E-value=19 Score=41.41 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=20.6
Q ss_pred CCCeeeccCCCchHHHHHHHHHhcc
Q 003502 142 RGGILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 142 ~g~ILade~GlGKTi~ai~li~~~~ 166 (815)
+..|+.-+.|+|||..|..++..+.
T Consensus 39 ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhcc
Confidence 3556799999999999988877665
No 338
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=72.05 E-value=21 Score=35.52 Aligned_cols=24 Identities=33% Similarity=0.196 Sum_probs=19.4
Q ss_pred CCCeeeccCCCchHHHHHHHHHhc
Q 003502 142 RGGILADEMGMGKTIQAIALVLAK 165 (815)
Q Consensus 142 ~g~ILade~GlGKTi~ai~li~~~ 165 (815)
+..+|.-+.|+|||..+.++....
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 467889999999999887766544
No 339
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=71.92 E-value=11 Score=41.25 Aligned_cols=38 Identities=16% Similarity=0.115 Sum_probs=24.7
Q ss_pred eeEEEeecceeccCCCchHHHHHHhhh---cCcEEEeeCCCCC
Q 003502 336 WERIILDEAHFIKDRRSNTAKAVLALE---SSYKWALSGTPLQ 375 (815)
Q Consensus 336 ~~~vIvDEaH~~kn~~s~~~~~~~~l~---~~~r~~LTgTPi~ 375 (815)
++.+++|||..+.. ......+.+++ ...++++|.||-.
T Consensus 102 ~~~~~idEa~~~~~--~~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 102 IAIIWFEEASQLTF--EDIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred eeeehhhhhhhcCH--HHHHHHHHHhhccCCccEEEEEcCcCC
Confidence 58899999999843 23333333443 2235999999954
No 340
>PRK10865 protein disaggregation chaperone; Provisional
Probab=71.71 E-value=12 Score=45.59 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=26.3
Q ss_pred HHHHHHHhhc-cCCCCeeeccCCCchHHHHHHHHHhcc
Q 003502 130 LAWALKQEES-AIRGGILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 130 ~~~~~~~~~~-~~~g~ILade~GlGKTi~ai~li~~~~ 166 (815)
+..++..+.+ ...+.||.-++|.|||..+-+++....
T Consensus 187 i~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 187 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred HHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhh
Confidence 5666654333 224788899999999999977776553
No 341
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=71.66 E-value=20 Score=43.92 Aligned_cols=42 Identities=21% Similarity=0.322 Sum_probs=28.8
Q ss_pred eeEEEeecceeccCCCchHHHHHHhh-hcCcEEEeeCCCCCCchh
Q 003502 336 WERIILDEAHFIKDRRSNTAKAVLAL-ESSYKWALSGTPLQNRVG 379 (815)
Q Consensus 336 ~~~vIvDEaH~~kn~~s~~~~~~~~l-~~~~r~~LTgTPi~n~~~ 379 (815)
-++||||||-.+... ...+.+... ....+++|.|=|-|-.+-
T Consensus 434 ~~vlIVDEASMv~~~--~m~~LL~~a~~~garvVLVGD~~QLpsV 476 (988)
T PRK13889 434 RDVLVIDEAGMVGTR--QLERVLSHAADAGAKVVLVGDPQQLQAI 476 (988)
T ss_pred CcEEEEECcccCCHH--HHHHHHHhhhhCCCEEEEECCHHHcCCC
Confidence 468999999988543 333344333 567899999988765443
No 342
>PRK13342 recombination factor protein RarA; Reviewed
Probab=71.46 E-value=9.4 Score=42.16 Aligned_cols=23 Identities=35% Similarity=0.212 Sum_probs=18.3
Q ss_pred CCCeeeccCCCchHHHHHHHHHh
Q 003502 142 RGGILADEMGMGKTIQAIALVLA 164 (815)
Q Consensus 142 ~g~ILade~GlGKTi~ai~li~~ 164 (815)
...||.-++|+|||..|-++...
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46788899999999988666543
No 343
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.86 E-value=26 Score=40.77 Aligned_cols=26 Identities=23% Similarity=0.170 Sum_probs=21.3
Q ss_pred CCCeeeccCCCchHHHHHHHHHhccc
Q 003502 142 RGGILADEMGMGKTIQAIALVLAKRE 167 (815)
Q Consensus 142 ~g~ILade~GlGKTi~ai~li~~~~~ 167 (815)
+..|+.-+.|+|||..|.+++..+.-
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhcC
Confidence 34578899999999999888887653
No 344
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=70.73 E-value=2.7 Score=45.75 Aligned_cols=48 Identities=42% Similarity=0.964 Sum_probs=41.4
Q ss_pred hhhcCcccccCCCCccc-cCCchhhhhhHhhhccccCCCCCCCCCCCcccc
Q 003502 558 QQVCGLCNDLADDPVVT-NCGHAFCKACLFDSSASKFVAKCPTCSIPLTVD 607 (815)
Q Consensus 558 ~~~~~~~~~~~~~~~~~-~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~ 607 (815)
...|.+|.....+|+.+ .|||.||..|+...... ...||.|+......
T Consensus 21 ~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~--~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 21 NLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN--HQKCPVCRQELTQA 69 (391)
T ss_pred cccCccccccccCCCCCCCCCCcccccccchhhcc--CcCCcccccccchh
Confidence 45699999999999995 99999999999988877 88999998776543
No 345
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=70.58 E-value=2.4 Score=41.44 Aligned_cols=43 Identities=35% Similarity=0.845 Sum_probs=31.5
Q ss_pred hcCcccccCC-C-CccccCCchhhhhhHhhhccccCCCCCCCCCCCccc
Q 003502 560 VCGLCNDLAD-D-PVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTV 606 (815)
Q Consensus 560 ~~~~~~~~~~-~-~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~ 606 (815)
.|..|..-.+ + -.++.|.|+||..|.-..... .||.|+.++.+
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~~----~C~lCkk~ir~ 49 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKASSPD----VCPLCKKSIRI 49 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhcccCCcc----ccccccceeee
Confidence 4777764443 2 258999999999999554443 99999988644
No 346
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=69.75 E-value=12 Score=38.76 Aligned_cols=62 Identities=13% Similarity=0.036 Sum_probs=49.1
Q ss_pred cccCcchHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhC--CCcEEEEecCCCHHHH
Q 003502 638 DEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS--GVNCVQLVGSMSIPAR 701 (815)
Q Consensus 638 ~~~~~s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~--g~~~~~i~G~~~~~~R 701 (815)
....++.|-+.+-+-+...++.+ .+|.|-|...++.-.|+..|+.. +.....++|..++..|
T Consensus 122 ~AV~GaGKTEMif~~i~~al~~G--~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~S~~~fr 185 (441)
T COG4098 122 WAVTGAGKTEMIFQGIEQALNQG--GRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGDSDSYFR 185 (441)
T ss_pred EEecCCCchhhhHHHHHHHHhcC--CeEEEecCcccchHHHHHHHHHhhccCCeeeEecCCchhcc
Confidence 34677899999999998887654 79999999999988888888765 5677788887654433
No 347
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=69.67 E-value=16 Score=37.18 Aligned_cols=49 Identities=22% Similarity=0.379 Sum_probs=36.7
Q ss_pred CCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHHHHHHHHHHHHhc
Q 003502 141 IRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRFT 211 (815)
Q Consensus 141 ~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~ll~qW~~Ei~~~~ 211 (815)
.+|.+|--.+|+||++.|-+++...- ..++-|...-|+..|.-|-++..
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATEAn----------------------STFFSvSSSDLvSKWmGESEkLV 214 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATEAN----------------------STFFSVSSSDLVSKWMGESEKLV 214 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhhcC----------------------CceEEeehHHHHHHHhccHHHHH
Confidence 36889999999999999877665431 24555666788999998877653
No 348
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=69.61 E-value=11 Score=38.46 Aligned_cols=48 Identities=23% Similarity=0.220 Sum_probs=35.8
Q ss_pred CCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHHHHHHHHHHH
Q 003502 142 RGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEIN 208 (815)
Q Consensus 142 ~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~ll~qW~~Ei~ 208 (815)
.|.+|--.+|+|||..|+|+..... ..+ .+++++-=+.++.++...+.
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~-~~g------------------~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELL-KAG------------------ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH-HcC------------------CeEEEEEHHHHHHHHHHHHh
Confidence 5788888999999999988887776 322 36666666777777766654
No 349
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=69.42 E-value=43 Score=38.23 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=19.6
Q ss_pred CCeeeccCCCchHHHHHHHHHhcc
Q 003502 143 GGILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 143 g~ILade~GlGKTi~ai~li~~~~ 166 (815)
..|+.-+.|+|||..|-.++..+.
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 347889999999999988777654
No 350
>PRK07952 DNA replication protein DnaC; Validated
Probab=69.40 E-value=14 Score=37.38 Aligned_cols=44 Identities=25% Similarity=0.095 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhh---ccCCCCeeeccCCCchHHHHHHHHHhccc
Q 003502 124 RYQKEWLAWALKQEE---SAIRGGILADEMGMGKTIQAIALVLAKRE 167 (815)
Q Consensus 124 ~yQ~~~~~~~~~~~~---~~~~g~ILade~GlGKTi~ai~li~~~~~ 167 (815)
+.|..++..+..... ....+.+|.-.+|+|||..+.+++..+..
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~ 125 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLL 125 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 346555555443222 22246789999999999999888877654
No 351
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=69.39 E-value=28 Score=39.43 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=19.1
Q ss_pred eeeccCCCchHHHHHHHHHhcc
Q 003502 145 ILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 145 ILade~GlGKTi~ai~li~~~~ 166 (815)
|+.-+.|+|||..|.+++..+.
T Consensus 40 Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 40 LFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred EEECCCCCCHHHHHHHHHHHHh
Confidence 8889999999999988877664
No 352
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=69.39 E-value=12 Score=38.41 Aligned_cols=39 Identities=26% Similarity=0.147 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHH
Q 003502 124 RYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVL 163 (815)
Q Consensus 124 ~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~ 163 (815)
|+.+..+..++.....+ +..+|-.++|+|||..|-++..
T Consensus 5 ~~~~~l~~~~l~~l~~g-~~vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 5 DAVKRVTSRALRYLKSG-YPVHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred HHHHHHHHHHHHHHhcC-CeEEEEcCCCCCHHHHHHHHHH
Confidence 34444444544444433 5778899999999999977765
No 353
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=69.34 E-value=15 Score=43.13 Aligned_cols=81 Identities=16% Similarity=0.184 Sum_probs=66.5
Q ss_pred ccccCcchHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHH-hCCCcEEEEecCCCHHHHHHHHHhhcCCCCce
Q 003502 637 LDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLH-KSGVNCVQLVGSMSIPARDAAINRFTEDPDCK 715 (815)
Q Consensus 637 ~~~~~~s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~-~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~ 715 (815)
+...++|.|.+..++++...+..+ +.+||-..-......+.+.|+ ..|.++..+|++.+..+|.....+..+| ..+
T Consensus 222 l~GvTGSGKTEvYl~~i~~~L~~G--kqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G-~~~ 298 (730)
T COG1198 222 LDGVTGSGKTEVYLEAIAKVLAQG--KQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRG-EAR 298 (730)
T ss_pred EeCCCCCcHHHHHHHHHHHHHHcC--CEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcC-Cce
Confidence 455678999999999999998865 788888877665555555554 4588999999999999999999999988 888
Q ss_pred EEEEe
Q 003502 716 IFLMS 720 (815)
Q Consensus 716 vlL~s 720 (815)
|++.+
T Consensus 299 vVIGt 303 (730)
T COG1198 299 VVIGT 303 (730)
T ss_pred EEEEe
Confidence 88866
No 354
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.32 E-value=2.7 Score=43.63 Aligned_cols=46 Identities=28% Similarity=0.569 Sum_probs=36.8
Q ss_pred hhhcCcccccCC----CCccccCCchhhhhhHhhhccccCC-CCCCCCCCC
Q 003502 558 QQVCGLCNDLAD----DPVVTNCGHAFCKACLFDSSASKFV-AKCPTCSIP 603 (815)
Q Consensus 558 ~~~~~~~~~~~~----~~~~~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~ 603 (815)
...|.+|.+... ...+..|||.|-..|+.++....-. ..||.|++.
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik 54 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIK 54 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeec
Confidence 457999976543 3357789999999999999988877 599999953
No 355
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=69.07 E-value=16 Score=39.68 Aligned_cols=23 Identities=22% Similarity=0.007 Sum_probs=18.3
Q ss_pred CCCeeeccCCCchHHHHHHHHHh
Q 003502 142 RGGILADEMGMGKTIQAIALVLA 164 (815)
Q Consensus 142 ~g~ILade~GlGKTi~ai~li~~ 164 (815)
.+.|+--..|+|||..+.++...
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHH
Confidence 47888889999999888775554
No 356
>PRK04132 replication factor C small subunit; Provisional
Probab=69.06 E-value=12 Score=44.75 Aligned_cols=53 Identities=17% Similarity=0.212 Sum_probs=32.4
Q ss_pred eeeEEEeecceeccCCCchHHHHHHhh---hcCcEEEeeCCCCCCchhhHHHHHHHhc
Q 003502 335 KWERIILDEAHFIKDRRSNTAKAVLAL---ESSYKWALSGTPLQNRVGELYSLVRFLQ 389 (815)
Q Consensus 335 ~~~~vIvDEaH~~kn~~s~~~~~~~~l---~~~~r~~LTgTPi~n~~~el~~ll~~L~ 389 (815)
++.+|||||||.+-.. .....++.+ ....+++|+.++...-+.-|.|-...+.
T Consensus 630 ~~KVvIIDEaD~Lt~~--AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~ 685 (846)
T PRK04132 630 SFKIIFLDEADALTQD--AQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFR 685 (846)
T ss_pred CCEEEEEECcccCCHH--HHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEe
Confidence 4678999999999532 222222233 3566789998887655555555444433
No 357
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.96 E-value=2.6 Score=42.19 Aligned_cols=45 Identities=27% Similarity=0.606 Sum_probs=35.8
Q ss_pred hhcCcccccC---CCCccccCCchhhhhhHhhhccccCCCCCCCCCCCc
Q 003502 559 QVCGLCNDLA---DDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPL 604 (815)
Q Consensus 559 ~~~~~~~~~~---~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~ 604 (815)
..|.+|.... +.-.++.|.|.|-..|+.+++.. ....||.|+.++
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~-y~~~CPvCrt~i 371 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLG-YSNKCPVCRTAI 371 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhh-hcccCCccCCCC
Confidence 5699997543 23478999999999999998763 467899999875
No 358
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=68.89 E-value=13 Score=40.73 Aligned_cols=71 Identities=17% Similarity=0.246 Sum_probs=46.3
Q ss_pred cchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHH-
Q 003502 121 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA- 199 (815)
Q Consensus 121 ~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~l- 199 (815)
..+|-|..-..-+.+.+... +.|+|-.+.|+|||+.-++++..+....+. .-.-||-|...+
T Consensus 16 ~iYPEQ~~YM~elKrsLDak-Gh~llEMPSGTGKTvsLLSli~aYq~~~p~----------------~~~KliYCSRTvp 78 (755)
T KOG1131|consen 16 YIYPEQYEYMRELKRSLDAK-GHCLLEMPSGTGKTVSLLSLIIAYQLHYPD----------------EHRKLIYCSRTVP 78 (755)
T ss_pred ccCHHHHHHHHHHHHhhccC-CcEEEECCCCCCcchHHHHHHHHHHHhCCc----------------ccceEEEecCcch
Confidence 36788854433333344444 478999999999999999998877655432 125588887543
Q ss_pred -HHHHHHHHH
Q 003502 200 -VTQWVSEIN 208 (815)
Q Consensus 200 -l~qW~~Ei~ 208 (815)
+..-..|++
T Consensus 79 EieK~l~El~ 88 (755)
T KOG1131|consen 79 EIEKALEELK 88 (755)
T ss_pred HHHHHHHHHH
Confidence 444455554
No 359
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=68.38 E-value=2.2 Score=51.50 Aligned_cols=143 Identities=33% Similarity=0.461 Sum_probs=126.3
Q ss_pred chHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 003502 643 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 722 (815)
Q Consensus 643 s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~ 722 (815)
++|+..+...+..+.-...-+|+|||+++...+++++..+..+++.+....++ ++-...+..|.. +.||++-+.
T Consensus 1202 g~kI~~v~~~il~iK~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t---~d~~dc~~~fk~---I~clll~~~ 1275 (1394)
T KOG0298|consen 1202 GTKIDSVVIAILYIKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGET---EDFDDCIICFKS---IDCLLLFVS 1275 (1394)
T ss_pred ccCchhHHHHHHHHhccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccCC---cchhhhhhhccc---ceEEEEEec
Confidence 67788887777777666667899999999999999999999999998765543 345568888864 899999999
Q ss_pred CCcccccccccCEEEEeCCCCCcchHHHHhHhhhcCCCCCcEEEEEEEeCCcHHHHHHHHHHHHHHHhh
Q 003502 723 AGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFE 791 (815)
Q Consensus 723 ~g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~vy~l~~~~TiEe~i~~~~~~K~~~~~ 791 (815)
.++-|+||..|.||+..+|--||..+.||+||+||+||++++.||++++.+|+||.|+.....|.....
T Consensus 1276 ~~~~GLNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvEe~Il~l~~~~ee~l~ 1344 (1394)
T KOG0298|consen 1276 KGSKGLNLIEATHVFLVEPILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVEENILSLITSKEETLT 1344 (1394)
T ss_pred cCcccccHHhhhhhheeccccCchHHHhhhhhhhhcccccchhhhhhhhccchHHHHHHHhhhhHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999888766543
No 360
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=68.16 E-value=7.9 Score=37.15 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=32.4
Q ss_pred CeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHHHHHHHHHHHH
Q 003502 144 GILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINR 209 (815)
Q Consensus 144 ~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~ll~qW~~Ei~~ 209 (815)
.++.-++|+|||..++.++......+ .++++|.......+..+.+..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g-------------------~~v~~~s~e~~~~~~~~~~~~ 48 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARG-------------------EPGLYVTLEESPEELIENAES 48 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCC-------------------CcEEEEECCCCHHHHHHHHHH
Confidence 36777999999999988877665322 478888875555555544443
No 361
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=68.13 E-value=3.7 Score=39.22 Aligned_cols=26 Identities=31% Similarity=0.249 Sum_probs=21.7
Q ss_pred CCCeeeccCCCchHHHHHHHHHhccc
Q 003502 142 RGGILADEMGMGKTIQAIALVLAKRE 167 (815)
Q Consensus 142 ~g~ILade~GlGKTi~ai~li~~~~~ 167 (815)
.|.+|.-.+|+|||..|.+++.....
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~ 73 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIR 73 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhcc
Confidence 57888889999999999988877665
No 362
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=68.07 E-value=13 Score=41.70 Aligned_cols=48 Identities=27% Similarity=0.279 Sum_probs=32.2
Q ss_pred eeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHHHHHHHH
Q 003502 145 ILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVS 205 (815)
Q Consensus 145 ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~ll~qW~~ 205 (815)
|+--..|+|||-+|+.=++++...+. +.+..+++||+.|+.++.-...
T Consensus 230 VVQGaAGSGKTtiALHRvAyLlY~~R-------------~~l~~k~vlvl~PN~vFleYis 277 (747)
T COG3973 230 VVQGAAGSGKTTIALHRVAYLLYGYR-------------GPLQAKPVLVLGPNRVFLEYIS 277 (747)
T ss_pred EEecCCCCCchhHHHHHHHHHHhccc-------------cccccCceEEEcCcHHHHHHHH
Confidence 44567899999999765555543322 1224468999999988655533
No 363
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=67.70 E-value=30 Score=34.79 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=35.4
Q ss_pred CeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEc---ChHHHHHHHHHHHHhc
Q 003502 144 GILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVIC---PVAAVTQWVSEINRFT 211 (815)
Q Consensus 144 ~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~---P~~ll~qW~~Ei~~~~ 211 (815)
++|+-..|+|||..++.+++....-....+. .......+++|+++ |...+.+-...+...+
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~-------~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~ 67 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGG-------GLKVTEPGRVVYLSAEDPREEIHRRLEAILQHL 67 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCC-------ccccCCCceEEEEECCCCHHHHHHHHHHHHhhc
Confidence 6788899999999998887765322111110 00011346889998 4455555444554443
No 364
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=67.58 E-value=34 Score=38.80 Aligned_cols=22 Identities=27% Similarity=0.226 Sum_probs=18.9
Q ss_pred eeeccCCCchHHHHHHHHHhcc
Q 003502 145 ILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 145 ILade~GlGKTi~ai~li~~~~ 166 (815)
|+.-+.|+|||-.|-+++..+.
T Consensus 40 Lf~Gp~G~GKTt~Ar~LAk~L~ 61 (535)
T PRK08451 40 LFSGLRGSGKTSSARIFARALV 61 (535)
T ss_pred EEECCCCCcHHHHHHHHHHHhc
Confidence 7889999999999988877664
No 365
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=67.43 E-value=26 Score=42.84 Aligned_cols=95 Identities=11% Similarity=-0.014 Sum_probs=68.4
Q ss_pred CcchHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHh----CCCcEEEEecCCCHHHHHHHHHhhcCCCCceE
Q 003502 641 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK----SGVNCVQLVGSMSIPARDAAINRFTEDPDCKI 716 (815)
Q Consensus 641 ~~s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~----~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v 716 (815)
.+|.|-...+..+...+.. +.+++|.+..+..+......+.. .++++..++|.++..++.+++..+.++ .+.|
T Consensus 481 TGsGKT~val~a~l~al~~--g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g-~~dI 557 (926)
T TIGR00580 481 VGFGKTEVAMRAAFKAVLD--GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASG-KIDI 557 (926)
T ss_pred CCccHHHHHHHHHHHHHHh--CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcC-CceE
Confidence 4577776554444333333 47899999999887776665554 467888899999988998999998876 7888
Q ss_pred EEEecCCCcccccccccCEEEE
Q 003502 717 FLMSLKAGGVALNLTVASHVFL 738 (815)
Q Consensus 717 lL~st~~g~~GlNL~~a~~vI~ 738 (815)
++.+.......+.+.....||+
T Consensus 558 VIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 558 LIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred EEchHHHhhCCCCcccCCEEEe
Confidence 8877666555667777666665
No 366
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.36 E-value=25 Score=40.73 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=18.8
Q ss_pred eeeccCCCchHHHHHHHHHhcc
Q 003502 145 ILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 145 ILade~GlGKTi~ai~li~~~~ 166 (815)
|+.-+.|+|||..+..++..+.
T Consensus 42 Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 42 LFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred EEECCCCCCHHHHHHHHHHHhc
Confidence 7889999999999988876654
No 367
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=66.83 E-value=17 Score=43.35 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=19.3
Q ss_pred CCCeeeccCCCchHHHHHHHHHhc
Q 003502 142 RGGILADEMGMGKTIQAIALVLAK 165 (815)
Q Consensus 142 ~g~ILade~GlGKTi~ai~li~~~ 165 (815)
.+.||.-++|+|||..+-++....
T Consensus 208 ~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 208 NNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 477889999999999987766543
No 368
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=66.76 E-value=13 Score=44.00 Aligned_cols=22 Identities=32% Similarity=0.235 Sum_probs=17.8
Q ss_pred CCCeeeccCCCchHHHHHHHHH
Q 003502 142 RGGILADEMGMGKTIQAIALVL 163 (815)
Q Consensus 142 ~g~ILade~GlGKTi~ai~li~ 163 (815)
...||.-++|+|||..|-++..
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~ 74 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIAN 74 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4678899999999998866554
No 369
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=66.70 E-value=4.1 Score=42.02 Aligned_cols=55 Identities=25% Similarity=0.552 Sum_probs=40.0
Q ss_pred hhhhhhhhcCccccc-CCC------------CccccCCchhhhhhHhhhccccCCCCCCCCCCCcccccc
Q 003502 553 DAEHVQQVCGLCNDL-ADD------------PVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFT 609 (815)
Q Consensus 553 ~~~~~~~~~~~~~~~-~~~------------~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (815)
.....+..|.+|.+. ... |-.+.|||.+--.|+..+.. ..-.||.|+.++..|..
T Consensus 282 ql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~E--RqQTCPICr~p~ifd~~ 349 (491)
T COG5243 282 QLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLE--RQQTCPICRRPVIFDQS 349 (491)
T ss_pred hhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHH--hccCCCcccCccccccC
Confidence 334456789999865 332 36889999999999977654 45689999999654433
No 370
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=66.64 E-value=5.6 Score=41.50 Aligned_cols=36 Identities=28% Similarity=0.280 Sum_probs=28.2
Q ss_pred HHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhcc
Q 003502 131 AWALKQEESAIRGGILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 131 ~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~ 166 (815)
-.|.++-.-.++|.+++-++|+|||..|+++...+-
T Consensus 55 v~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG 90 (450)
T COG1224 55 VKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELG 90 (450)
T ss_pred HHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhC
Confidence 345555555668889999999999999998877654
No 371
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=66.32 E-value=41 Score=41.67 Aligned_cols=42 Identities=33% Similarity=0.342 Sum_probs=29.3
Q ss_pred eEEEeecceeccCCCchHHHHHHhh-hcCcEEEeeCCCCCCchhh
Q 003502 337 ERIILDEAHFIKDRRSNTAKAVLAL-ESSYKWALSGTPLQNRVGE 380 (815)
Q Consensus 337 ~~vIvDEaH~~kn~~s~~~~~~~~l-~~~~r~~LTgTPi~n~~~e 380 (815)
++||||||..+... .....+... .+..+++|.|=|-|-.+-+
T Consensus 470 ~vlVIDEAsMv~~~--~m~~Ll~~~~~~garvVLVGD~~QL~~V~ 512 (1102)
T PRK13826 470 TVFVLDEAGMVASR--QMALFVEAVTRAGAKLVLVGDPEQLQPIE 512 (1102)
T ss_pred cEEEEECcccCCHH--HHHHHHHHHHhcCCEEEEECCHHHcCCCC
Confidence 57999999998443 334444444 4678999999887754443
No 372
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=65.86 E-value=34 Score=39.39 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=19.1
Q ss_pred CCeeeccCCCchHHHHHHHHHhcc
Q 003502 143 GGILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 143 g~ILade~GlGKTi~ai~li~~~~ 166 (815)
..|+.-+.|+|||..|-.++..+.
T Consensus 40 ayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 457799999999999977766553
No 373
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=65.58 E-value=26 Score=42.66 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=25.9
Q ss_pred HHHHHHHHhhc-cCCCCeeeccCCCchHHHHHHHHHhc
Q 003502 129 WLAWALKQEES-AIRGGILADEMGMGKTIQAIALVLAK 165 (815)
Q Consensus 129 ~~~~~~~~~~~-~~~g~ILade~GlGKTi~ai~li~~~ 165 (815)
-+.++...+.+ ...+.||.-++|.|||..+-+++...
T Consensus 181 ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 181 EIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred HHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 36666654433 22577888899999999997776654
No 374
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=65.55 E-value=29 Score=37.39 Aligned_cols=24 Identities=25% Similarity=0.138 Sum_probs=18.8
Q ss_pred CCeeeccCCCchHHHHHHHHHhcc
Q 003502 143 GGILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 143 g~ILade~GlGKTi~ai~li~~~~ 166 (815)
-.+|.-.+|+|||.++..++....
T Consensus 139 ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 446678999999999988776643
No 375
>PRK10824 glutaredoxin-4; Provisional
Probab=65.44 E-value=38 Score=29.59 Aligned_cols=71 Identities=11% Similarity=0.120 Sum_probs=44.0
Q ss_pred HHHHHHHhcCCCceEEEEccC------hhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcC-CCCceEEEEecCC
Q 003502 651 EEIRFMVERDGSAKGIVFSQF------TSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTE-DPDCKIFLMSLKA 723 (815)
Q Consensus 651 ~~l~~~~~~~~~~KvIIFs~~------~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~-~~~~~vlL~st~~ 723 (815)
+.+..+++. ++|+||+.. =.......+.|...|+.|..++=......|. .+..+.. ..-++||+-..-+
T Consensus 6 ~~v~~~I~~---~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~-~l~~~sg~~TVPQIFI~G~~I 81 (115)
T PRK10824 6 EKIQRQIAE---NPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRA-ELPKYANWPTFPQLWVDGELV 81 (115)
T ss_pred HHHHHHHhc---CCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHH-HHHHHhCCCCCCeEEECCEEE
Confidence 344444433 699999873 3467778888888898877665444444444 3444433 3356777766555
Q ss_pred Cc
Q 003502 724 GG 725 (815)
Q Consensus 724 g~ 725 (815)
||
T Consensus 82 GG 83 (115)
T PRK10824 82 GG 83 (115)
T ss_pred cC
Confidence 55
No 376
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.32 E-value=5.2 Score=41.85 Aligned_cols=47 Identities=19% Similarity=0.515 Sum_probs=38.3
Q ss_pred hhcCcccccCCCC---ccccCCchhhhhhHhhhccccCCCCCCCCCCCccc
Q 003502 559 QVCGLCNDLADDP---VVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTV 606 (815)
Q Consensus 559 ~~~~~~~~~~~~~---~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~ 606 (815)
..|.+|.+....+ .++.|.|.|-..|+-.|+... ...||.|.....-
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~-r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT-RTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc-CccCCCCCCcCCC
Confidence 5899998765433 689999999999999998777 7789999986543
No 377
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=64.87 E-value=8.8 Score=40.56 Aligned_cols=50 Identities=20% Similarity=0.339 Sum_probs=37.6
Q ss_pred hccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcC-hHHHHHHHHHHHHh
Q 003502 138 ESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VAAVTQWVSEINRF 210 (815)
Q Consensus 138 ~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P-~~ll~qW~~Ei~~~ 210 (815)
.++.+|.+++-.+|+|||+.|=|++... +.|++=|. ..|...|.-|=++.
T Consensus 242 rrPWkgvLm~GPPGTGKTlLAKAvATEc-----------------------~tTFFNVSsstltSKwRGeSEKl 292 (491)
T KOG0738|consen 242 RRPWKGVLMVGPPGTGKTLLAKAVATEC-----------------------GTTFFNVSSSTLTSKWRGESEKL 292 (491)
T ss_pred ccccceeeeeCCCCCcHHHHHHHHHHhh-----------------------cCeEEEechhhhhhhhccchHHH
Confidence 3455799999999999999987776643 45666555 55669998886655
No 378
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=64.62 E-value=31 Score=41.25 Aligned_cols=37 Identities=27% Similarity=0.249 Sum_probs=24.9
Q ss_pred HHHHHHHhhc-cCCCCeeeccCCCchHHHHHHHHHhcc
Q 003502 130 LAWALKQEES-AIRGGILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 130 ~~~~~~~~~~-~~~g~ILade~GlGKTi~ai~li~~~~ 166 (815)
+..++..+.+ ...+.||.-++|+|||..+-+++....
T Consensus 191 i~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~ 228 (731)
T TIGR02639 191 LERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIA 228 (731)
T ss_pred HHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3344443332 235788999999999999877766553
No 379
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=63.90 E-value=5.9 Score=41.89 Aligned_cols=41 Identities=24% Similarity=0.217 Sum_probs=26.4
Q ss_pred HHHHHHHHHH---HhhccCCCCeeeccCCCchHHHHHHHHHhcc
Q 003502 126 QKEWLAWALK---QEESAIRGGILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 126 Q~~~~~~~~~---~~~~~~~g~ILade~GlGKTi~ai~li~~~~ 166 (815)
.++++.-.+. .-.-.+++.||+.++|+|||..|+++...+-
T Consensus 32 AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG 75 (398)
T PF06068_consen 32 AREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELG 75 (398)
T ss_dssp HHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhC
Confidence 3444443333 3333457889999999999999999887764
No 380
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.78 E-value=25 Score=40.75 Aligned_cols=42 Identities=21% Similarity=0.084 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhhc-c-CCCCeeeccCCCchHHHHHHHHHhccc
Q 003502 126 QKEWLAWALKQEES-A-IRGGILADEMGMGKTIQAIALVLAKRE 167 (815)
Q Consensus 126 Q~~~~~~~~~~~~~-~-~~g~ILade~GlGKTi~ai~li~~~~~ 167 (815)
|...+..+.....+ . .+.-|+.-..|.|||..|..++..+.-
T Consensus 21 Qe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 21 QEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 44444444443332 1 234678899999999999888776643
No 381
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.40 E-value=49 Score=38.28 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=19.7
Q ss_pred CCeeeccCCCchHHHHHHHHHhcc
Q 003502 143 GGILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 143 g~ILade~GlGKTi~ai~li~~~~ 166 (815)
..|+.-+.|+|||..+..++..+.
T Consensus 40 ayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 40 AFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhc
Confidence 347888999999999988877664
No 382
>PRK14873 primosome assembly protein PriA; Provisional
Probab=61.55 E-value=39 Score=39.66 Aligned_cols=78 Identities=9% Similarity=0.065 Sum_probs=62.8
Q ss_pred cchHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHh-CC-CcEEEEecCCCHHHHHHHHHhhcCCCCceEEEE
Q 003502 642 SSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK-SG-VNCVQLVGSMSIPARDAAINRFTEDPDCKIFLM 719 (815)
Q Consensus 642 ~s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~-~g-~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~ 719 (815)
+|.|-+..++++...+..+ ..+||...-......+...|.. .| ..+..+|+..+..+|.+...+..+| ..+|+|.
T Consensus 170 GSGKTevyl~~i~~~l~~G--k~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G-~~~IViG 246 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAG--RGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRG-QARVVVG 246 (665)
T ss_pred CCcHHHHHHHHHHHHHHcC--CeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCC-CCcEEEE
Confidence 5889999999999998754 6788888877777777777764 34 6789999999999999998888876 7788775
Q ss_pred ecCC
Q 003502 720 SLKA 723 (815)
Q Consensus 720 st~~ 723 (815)
+ ++
T Consensus 247 t-RS 249 (665)
T PRK14873 247 T-RS 249 (665)
T ss_pred c-ce
Confidence 4 44
No 383
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=60.72 E-value=44 Score=35.30 Aligned_cols=22 Identities=23% Similarity=0.222 Sum_probs=16.9
Q ss_pred eeccCCCchHHHHHHHHHhccc
Q 003502 146 LADEMGMGKTIQAIALVLAKRE 167 (815)
Q Consensus 146 Lade~GlGKTi~ai~li~~~~~ 167 (815)
+.-..|+|||-++..++..+..
T Consensus 119 lvGpnGsGKTTt~~kLA~~l~~ 140 (318)
T PRK10416 119 VVGVNGVGKTTTIGKLAHKYKA 140 (318)
T ss_pred EECCCCCcHHHHHHHHHHHHHh
Confidence 3459999999999777776653
No 384
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=59.69 E-value=51 Score=29.91 Aligned_cols=86 Identities=20% Similarity=0.185 Sum_probs=55.7
Q ss_pred eEEEEccChhHHHHHHHHHHhCCCcE--EEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEeCC
Q 003502 664 KGIVFSQFTSFLDLINYSLHKSGVNC--VQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDP 741 (815)
Q Consensus 664 KvIIFs~~~~~~~~l~~~L~~~g~~~--~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~~d~ 741 (815)
.|=++||+-.+...+.+.+...|+.+ ..=.|+...-.=.++++-|.+++..+++++-. +.
T Consensus 3 ~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly~------------------E~ 64 (138)
T PF13607_consen 3 GVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIVLYL------------------EG 64 (138)
T ss_dssp SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEEEE------------------S-
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEEEEc------------------cC
Confidence 46689999999999999998876655 44456554445668999999999999988664 44
Q ss_pred CCCcchHHHHhHhhhcCCCCCcEEEEEEE
Q 003502 742 WWNPAVEQQAQDRIHRIGQYKPIRIVRFL 770 (815)
Q Consensus 742 ~wnp~~~~QaigR~~R~GQ~~~V~vy~l~ 770 (815)
.-+|..+.++.-|+.|. |||.+|.-=
T Consensus 65 ~~d~~~f~~~~~~a~~~---KPVv~lk~G 90 (138)
T PF13607_consen 65 IGDGRRFLEAARRAARR---KPVVVLKAG 90 (138)
T ss_dssp -S-HHHHHHHHHHHCCC---S-EEEEE--
T ss_pred CCCHHHHHHHHHHHhcC---CCEEEEeCC
Confidence 44788888888888763 888887653
No 385
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=59.65 E-value=43 Score=27.68 Aligned_cols=56 Identities=11% Similarity=0.022 Sum_probs=36.6
Q ss_pred ceEEEEcc------ChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEE
Q 003502 663 AKGIVFSQ------FTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFL 718 (815)
Q Consensus 663 ~KvIIFs~------~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL 718 (815)
++|+||+. +=.....+.++|...|++|..++=....+.+..+...-....-+.||+
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi 69 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV 69 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 69999987 344677888999999999988875555444544444322222344544
No 386
>PHA00350 putative assembly protein
Probab=59.65 E-value=25 Score=38.07 Aligned_cols=14 Identities=21% Similarity=0.254 Sum_probs=11.8
Q ss_pred ccCCCchHHHHHHH
Q 003502 148 DEMGMGKTIQAIAL 161 (815)
Q Consensus 148 de~GlGKTi~ai~l 161 (815)
--+|+|||+.|+..
T Consensus 8 G~pGSGKT~~aV~~ 21 (399)
T PHA00350 8 GRPGSYKSYEAVVY 21 (399)
T ss_pred cCCCCchhHHHHHH
Confidence 35899999999874
No 387
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=59.37 E-value=55 Score=37.63 Aligned_cols=89 Identities=12% Similarity=0.170 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEccCh----hHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEec
Q 003502 646 IEALREEIRFMVERDGSAKGIVFSQFT----SFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSL 721 (815)
Q Consensus 646 l~~l~~~l~~~~~~~~~~KvIIFs~~~----~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st 721 (815)
+-+++.++..+ ..|.++.+..... +.+.-+..+|...|+.+..++|+++..+|.+++.+-.+| .+.+++.+-
T Consensus 298 vVA~laml~ai---~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G-~~~ivVGTH 373 (677)
T COG1200 298 VVALLAMLAAI---EAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASG-EIDIVVGTH 373 (677)
T ss_pred HHHHHHHHHHH---HcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCC-CCCEEEEcc
Confidence 34444555443 2356787777653 445667788888899999999999999999999999987 889988776
Q ss_pred CCCcccccccccCEEEE
Q 003502 722 KAGGVALNLTVASHVFL 738 (815)
Q Consensus 722 ~~g~~GlNL~~a~~vI~ 738 (815)
...-..+++++.-.||+
T Consensus 374 ALiQd~V~F~~LgLVIi 390 (677)
T COG1200 374 ALIQDKVEFHNLGLVII 390 (677)
T ss_pred hhhhcceeecceeEEEE
Confidence 77777888777766665
No 388
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=58.81 E-value=68 Score=36.03 Aligned_cols=79 Identities=11% Similarity=0.102 Sum_probs=46.5
Q ss_pred CcccccchHHHHHHHHHHHHHhhc-----cCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCcc
Q 003502 116 PDLITPLLRYQKEWLAWALKQEES-----AIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKA 190 (815)
Q Consensus 116 ~~~~~~L~~yQ~~~~~~~~~~~~~-----~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (815)
++....|.|||+-.+.-++--... .+.-++|--.=|=|||-.+.+++......... ....
T Consensus 56 ~~~p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~---------------~~~~ 120 (546)
T COG4626 56 PGFPESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWR---------------SGAG 120 (546)
T ss_pred CCCccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhh---------------cCCc
Confidence 445567999999877665522221 12234666778899998876665554433222 2247
Q ss_pred EEEEcChHH-HHHHHHHHHH
Q 003502 191 TLVICPVAA-VTQWVSEINR 209 (815)
Q Consensus 191 ~LIV~P~~l-l~qW~~Ei~~ 209 (815)
++|++|+-- ..+=..+++.
T Consensus 121 ~~i~A~s~~qa~~~F~~ar~ 140 (546)
T COG4626 121 IYILAPSVEQAANSFNPARD 140 (546)
T ss_pred EEEEeccHHHHHHhhHHHHH
Confidence 889988632 2344444443
No 389
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=58.62 E-value=51 Score=37.16 Aligned_cols=23 Identities=35% Similarity=0.257 Sum_probs=18.5
Q ss_pred CeeeccCCCchHHHHHHHHHhcc
Q 003502 144 GILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 144 ~ILade~GlGKTi~ai~li~~~~ 166 (815)
.|+.-+.|.|||..|-.++..+.
T Consensus 41 yLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 41 YIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 36799999999999877766654
No 390
>PRK11823 DNA repair protein RadA; Provisional
Probab=58.59 E-value=25 Score=39.20 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=30.7
Q ss_pred eeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHHHHHHHHHHHH
Q 003502 145 ILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINR 209 (815)
Q Consensus 145 ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~ll~qW~~Ei~~ 209 (815)
+|.-++|.|||..++.++......+ .++|.|.-..-..|.......
T Consensus 84 lI~G~pG~GKTtL~lq~a~~~a~~g-------------------~~vlYvs~Ees~~qi~~ra~r 129 (446)
T PRK11823 84 LIGGDPGIGKSTLLLQVAARLAAAG-------------------GKVLYVSGEESASQIKLRAER 129 (446)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcC-------------------CeEEEEEccccHHHHHHHHHH
Confidence 6788999999999888777654211 367777764445555544443
No 391
>PRK10689 transcription-repair coupling factor; Provisional
Probab=58.24 E-value=47 Score=41.77 Aligned_cols=96 Identities=13% Similarity=-0.013 Sum_probs=65.3
Q ss_pred cCcchHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHh----CCCcEEEEecCCCHHHHHHHHHhhcCCCCce
Q 003502 640 FQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK----SGVNCVQLVGSMSIPARDAAINRFTEDPDCK 715 (815)
Q Consensus 640 ~~~s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~----~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~ 715 (815)
..++.|-...+..+...+. .+.+++|.+..+..+..+...+.. .++++..++|..+..++.+++....++ .+.
T Consensus 629 ~TGsGKT~val~aa~~~~~--~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g-~~d 705 (1147)
T PRK10689 629 DVGFGKTEVAMRAAFLAVE--NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEG-KID 705 (1147)
T ss_pred CCCcCHHHHHHHHHHHHHH--cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhC-CCC
Confidence 3467777654433333332 357899999998887776666653 356777899999999998888888766 678
Q ss_pred EEEEecCCCcccccccccCEEEE
Q 003502 716 IFLMSLKAGGVALNLTVASHVFL 738 (815)
Q Consensus 716 vlL~st~~g~~GlNL~~a~~vI~ 738 (815)
|++.+.......+++.....+|+
T Consensus 706 IVVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 706 ILIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred EEEECHHHHhCCCCHhhCCEEEE
Confidence 88877655554555555555544
No 392
>PRK12377 putative replication protein; Provisional
Probab=57.55 E-value=32 Score=34.85 Aligned_cols=26 Identities=19% Similarity=0.107 Sum_probs=21.5
Q ss_pred CCCeeeccCCCchHHHHHHHHHhccc
Q 003502 142 RGGILADEMGMGKTIQAIALVLAKRE 167 (815)
Q Consensus 142 ~g~ILade~GlGKTi~ai~li~~~~~ 167 (815)
.+.+|.-++|+|||..+.+++..+..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~ 127 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLA 127 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46788889999999999888777654
No 393
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=57.53 E-value=45 Score=35.78 Aligned_cols=21 Identities=33% Similarity=0.313 Sum_probs=17.0
Q ss_pred CCCCeeeccCCCchHHHHHHH
Q 003502 141 IRGGILADEMGMGKTIQAIAL 161 (815)
Q Consensus 141 ~~g~ILade~GlGKTi~ai~l 161 (815)
...-||--.+|+|||-.|-.+
T Consensus 48 l~SmIl~GPPG~GKTTlA~li 68 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLI 68 (436)
T ss_pred CceeEEECCCCCCHHHHHHHH
Confidence 457799999999999988333
No 394
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=56.93 E-value=26 Score=38.91 Aligned_cols=38 Identities=26% Similarity=0.490 Sum_probs=25.4
Q ss_pred eeeEEEeecceeccCCCc--hHHHHHHhhhcCcEEEeeCCC
Q 003502 335 KWERIILDEAHFIKDRRS--NTAKAVLALESSYKWALSGTP 373 (815)
Q Consensus 335 ~~~~vIvDEaH~~kn~~s--~~~~~~~~l~~~~r~~LTgTP 373 (815)
.++..||||.+.++.++. .-++++..+.++- +=|-|-|
T Consensus 275 ~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdE-iHLCGep 314 (700)
T KOG0953|consen 275 PYEVAVIDEIQMMRDPSRGWAWTRALLGLAADE-IHLCGEP 314 (700)
T ss_pred ceEEEEehhHHhhcCcccchHHHHHHHhhhhhh-hhccCCc
Confidence 588999999999998763 3456666665432 2234444
No 395
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=55.83 E-value=84 Score=31.12 Aligned_cols=37 Identities=19% Similarity=0.314 Sum_probs=23.1
Q ss_pred eeeEEEeecceeccCCCch---HHHHHHhh-hcCcEEEeeC
Q 003502 335 KWERIILDEAHFIKDRRSN---TAKAVLAL-ESSYKWALSG 371 (815)
Q Consensus 335 ~~~~vIvDEaH~~kn~~s~---~~~~~~~l-~~~~r~~LTg 371 (815)
..+++|||..|.+.+.... ....+..+ ....++++|+
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 3688999999999875322 22222222 4556777776
No 396
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=55.80 E-value=20 Score=42.40 Aligned_cols=69 Identities=12% Similarity=0.033 Sum_probs=46.2
Q ss_pred chHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChH-HH
Q 003502 122 LLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVA-AV 200 (815)
Q Consensus 122 L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~-ll 200 (815)
|-|-|++++.+. . +..++.-.+|+|||.+.+.-++++....+. +...+|+|..+. ..
T Consensus 3 Ln~~Q~~av~~~------~-g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v---------------~p~~IL~lTFT~kAA 60 (672)
T PRK10919 3 LNPGQQQAVEFV------T-GPCLVLAGAGSGKTRVITNKIAHLIRGCGY---------------QARHIAAVTFTNKAA 60 (672)
T ss_pred CCHHHHHHHhCC------C-CCEEEEecCCCCHHHHHHHHHHHHHHhcCC---------------CHHHeeeEechHHHH
Confidence 678898888652 1 244555579999999998888887753221 125789999944 44
Q ss_pred HHHHHHHHHhcC
Q 003502 201 TQWVSEINRFTS 212 (815)
Q Consensus 201 ~qW~~Ei~~~~~ 212 (815)
..-..-+.+.++
T Consensus 61 ~em~~Rl~~~l~ 72 (672)
T PRK10919 61 REMKERVAQTLG 72 (672)
T ss_pred HHHHHHHHHHhC
Confidence 555566665554
No 397
>PF13173 AAA_14: AAA domain
Probab=55.76 E-value=8.7 Score=34.32 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=24.4
Q ss_pred eeEEEeecceeccCCCchHHHHHHhh---hcCcEEEeeCCCC
Q 003502 336 WERIILDEAHFIKDRRSNTAKAVLAL---ESSYKWALSGTPL 374 (815)
Q Consensus 336 ~~~vIvDEaH~~kn~~s~~~~~~~~l---~~~~r~~LTgTPi 374 (815)
-.+|++||+|++.+ ....++.+ ....++++||+-.
T Consensus 62 ~~~i~iDEiq~~~~----~~~~lk~l~d~~~~~~ii~tgS~~ 99 (128)
T PF13173_consen 62 KKYIFIDEIQYLPD----WEDALKFLVDNGPNIKIILTGSSS 99 (128)
T ss_pred CcEEEEehhhhhcc----HHHHHHHHHHhccCceEEEEccch
Confidence 45799999999965 33444444 2346899999853
No 398
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.43 E-value=84 Score=34.90 Aligned_cols=129 Identities=11% Similarity=0.084 Sum_probs=87.8
Q ss_pred chHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 003502 643 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 722 (815)
Q Consensus 643 s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~ 722 (815)
..+...+++.|.-.+....-..+|||...---.-.|..++...++.|+.|+--++..+-.++-.-|..+ ...|||.+-+
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qg-r~~vlLyTER 611 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQG-RKSVLLYTER 611 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhc-CceEEEEehh
Confidence 455666665554333333334678887665556678899999999999998888877777788889887 7888887755
Q ss_pred CCc-ccccccccCEEEEeCCCCCcchHHHHh---HhhhcCCCCC--cEEEEEEEeC
Q 003502 723 AGG-VALNLTVASHVFLMDPWWNPAVEQQAQ---DRIHRIGQYK--PIRIVRFLIE 772 (815)
Q Consensus 723 ~g~-~GlNL~~a~~vI~~d~~wnp~~~~Qai---gR~~R~GQ~~--~V~vy~l~~~ 772 (815)
+-= .-..+.+...||+|.||-||.-|.-.+ +|.--.|.+. .-++--|+++
T Consensus 612 ~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytK 667 (698)
T KOG2340|consen 612 AHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTK 667 (698)
T ss_pred hhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeec
Confidence 432 245577889999999999997665544 4544455432 2444445554
No 399
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=55.16 E-value=23 Score=36.98 Aligned_cols=49 Identities=12% Similarity=0.171 Sum_probs=29.9
Q ss_pred eeeEEEeecceeccCCCch------HHHHHHhh--hcCcEEEe--eCCCCCCchhhHHH
Q 003502 335 KWERIILDEAHFIKDRRSN------TAKAVLAL--ESSYKWAL--SGTPLQNRVGELYS 383 (815)
Q Consensus 335 ~~~~vIvDEaH~~kn~~s~------~~~~~~~l--~~~~r~~L--TgTPi~n~~~el~~ 383 (815)
++|+|++|=|=++-|.... +.+.+... .++|.++| =||--||.+..--.
T Consensus 221 ~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~ 279 (340)
T COG0552 221 GIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKI 279 (340)
T ss_pred CCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHH
Confidence 5899999999998775422 22222221 34555544 58888887665433
No 400
>PRK06450 threonine synthase; Validated
Probab=54.92 E-value=1.1e+02 Score=32.54 Aligned_cols=101 Identities=12% Similarity=0.038 Sum_probs=64.5
Q ss_pred ccCcchHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEE
Q 003502 639 EFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFL 718 (815)
Q Consensus 639 ~~~~s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL 718 (815)
....|-|.+.....|....+.+ .+.||-...=.+..-++.+-...|+++..+.-...+..+...+..+ +..|++
T Consensus 75 nPTGSfKDRga~~~i~~a~~~g--~~~vv~aSsGN~g~slA~~aa~~G~~~~i~vP~~~~~~k~~~i~~~----GA~vi~ 148 (338)
T PRK06450 75 NPTGSYKDRGSVTLISYLAEKG--IKQISEDSSGNAGASIAAYGAAAGIEVKIFVPETASGGKLKQIESY----GAEVVR 148 (338)
T ss_pred CCcCCCHHHHHHHHHHHHHHcC--CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHc----CCEEEE
Confidence 4567889998888887776543 4566666666778888888899999987766655556666777777 556666
Q ss_pred EecCCCcccccccccCEEEEeCCCCCcc
Q 003502 719 MSLKAGGVALNLTVASHVFLMDPWWNPA 746 (815)
Q Consensus 719 ~st~~g~~GlNL~~a~~vI~~d~~wnp~ 746 (815)
+...- ..-..+..-+-.++..+.|||.
T Consensus 149 v~~~~-~~~~~~a~~~g~~~~~~~~np~ 175 (338)
T PRK06450 149 VRGSR-EDVAKAAENSGYYYASHVLQPQ 175 (338)
T ss_pred ECCCH-HHHHHHHHhcCeEeccCCCCcc
Confidence 44211 1111111112235666777884
No 401
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=54.86 E-value=12 Score=37.85 Aligned_cols=33 Identities=33% Similarity=0.343 Sum_probs=24.9
Q ss_pred HHHHhhccCCCCeeeccCCCchHHHHHHHHHhc
Q 003502 133 ALKQEESAIRGGILADEMGMGKTIQAIALVLAK 165 (815)
Q Consensus 133 ~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~ 165 (815)
|.+.-.-.++..+||-.+|+|||..|+++...+
T Consensus 56 lik~KkmaGravLlaGppgtGKTAlAlaisqEL 88 (456)
T KOG1942|consen 56 LIKSKKMAGRAVLLAGPPGTGKTALALAISQEL 88 (456)
T ss_pred HHHhhhccCcEEEEecCCCCchhHHHHHHHHHh
Confidence 344444456788999999999999998876654
No 402
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=54.77 E-value=29 Score=34.59 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=27.4
Q ss_pred eeeEEEeecceeccCCCchHHHHHHhhhcCcEEEeeCCCCCCchh
Q 003502 335 KWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVG 379 (815)
Q Consensus 335 ~~~~vIvDEaH~~kn~~s~~~~~~~~l~~~~r~~LTgTPi~n~~~ 379 (815)
..+.+||||++.+-.. ....+..+.....++|-|=|.|-...
T Consensus 62 ~~~~liiDE~~~~~~g---~l~~l~~~~~~~~~~l~GDp~Q~~~~ 103 (234)
T PF01443_consen 62 SYDTLIIDEAQLLPPG---YLLLLLSLSPAKNVILFGDPLQIPYI 103 (234)
T ss_pred cCCEEEEeccccCChH---HHHHHHhhccCcceEEEECchhccCC
Confidence 4688999999987432 22224444444568888999886543
No 403
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=54.60 E-value=5.7 Score=40.48 Aligned_cols=52 Identities=27% Similarity=0.609 Sum_probs=39.2
Q ss_pred hhhhhhhcCcccccC-CCCccccCCchhhhhhHhhhccccCCCCCCCCCCCcccc
Q 003502 554 AEHVQQVCGLCNDLA-DDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVD 607 (815)
Q Consensus 554 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~ 607 (815)
.......|.+|..-. ++.++.-.|..||..|++.++. ....||.-..+..++
T Consensus 296 l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~--~~~~CPVT~~p~~v~ 348 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV--NYGHCPVTGYPASVD 348 (357)
T ss_pred CCCccccChhHHhccCCCceEEecceEEeHHHHHHHHH--hcCCCCccCCcchHH
Confidence 344567899998654 5556777799999999999998 667888766665543
No 404
>PF12846 AAA_10: AAA-like domain
Probab=54.53 E-value=16 Score=38.14 Aligned_cols=45 Identities=13% Similarity=0.125 Sum_probs=31.3
Q ss_pred CCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHHHHHHHHH
Q 003502 143 GGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSE 206 (815)
Q Consensus 143 g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~ll~qW~~E 206 (815)
++++.-.+|+|||..+..++......+ .+++|+-|..-...|.+.
T Consensus 3 h~~i~G~tGsGKT~~~~~l~~~~~~~g-------------------~~~~i~D~~g~~~~~~~~ 47 (304)
T PF12846_consen 3 HTLILGKTGSGKTTLLKNLLEQLIRRG-------------------PRVVIFDPKGDYSPLARA 47 (304)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHcC-------------------CCEEEEcCCchHHHHHHh
Confidence 456677999999998877776665433 377888887555444444
No 405
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=53.96 E-value=53 Score=35.46 Aligned_cols=42 Identities=17% Similarity=0.072 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhhcc--CCCCeeeccCCCchHHHHHHHHHhccc
Q 003502 126 QKEWLAWALKQEESA--IRGGILADEMGMGKTIQAIALVLAKRE 167 (815)
Q Consensus 126 Q~~~~~~~~~~~~~~--~~g~ILade~GlGKTi~ai~li~~~~~ 167 (815)
|..+...+.....++ .+.-|+.-..|+|||..|.+++..+.-
T Consensus 24 q~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc 67 (365)
T PRK07471 24 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLA 67 (365)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhC
Confidence 444444444333332 235678899999999999999888864
No 406
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=53.61 E-value=42 Score=32.19 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=20.6
Q ss_pred CCeeeccCCCchHHHHHHHHHhccc
Q 003502 143 GGILADEMGMGKTIQAIALVLAKRE 167 (815)
Q Consensus 143 g~ILade~GlGKTi~ai~li~~~~~ 167 (815)
.-|+.-+.|.|||-.+..++..+..
T Consensus 16 ~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 16 AYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4678889999999999888777654
No 407
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=53.56 E-value=46 Score=43.41 Aligned_cols=44 Identities=25% Similarity=0.161 Sum_probs=31.0
Q ss_pred cccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhc
Q 003502 119 ITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAK 165 (815)
Q Consensus 119 ~~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~ 165 (815)
...|-+-|++++..++..- .+-.+|---.|+|||.+.-+++...
T Consensus 965 ~~~Lt~~Q~~Av~~il~s~---dr~~~I~G~AGTGKTT~l~~v~~~~ 1008 (1747)
T PRK13709 965 MEGLTSGQRAATRMILEST---DRFTVVQGYAGVGKTTQFRAVMSAV 1008 (1747)
T ss_pred cCCCCHHHHHHHHHHHhCC---CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3568899999998876531 1345666688999999875554443
No 408
>PHA00012 I assembly protein
Probab=52.73 E-value=23 Score=36.98 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=17.3
Q ss_pred eeccCCCchHHHHHHHHHhcccc
Q 003502 146 LADEMGMGKTIQAIALVLAKREI 168 (815)
Q Consensus 146 Lade~GlGKTi~ai~li~~~~~~ 168 (815)
+---+|+|||+.|++-|...+..
T Consensus 6 ITGkPGSGKSl~aV~~I~~~L~~ 28 (361)
T PHA00012 6 VTGKLGAGKTLVAVSRIQDKLVK 28 (361)
T ss_pred EecCCCCCchHHHHHHHHHHHHc
Confidence 33468999999999877766543
No 409
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=51.87 E-value=67 Score=33.21 Aligned_cols=66 Identities=9% Similarity=0.117 Sum_probs=54.1
Q ss_pred CCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcC-----CCCceEEEEecCCCcccccccc
Q 003502 661 GSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTE-----DPDCKIFLMSLKAGGVALNLTV 732 (815)
Q Consensus 661 ~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~-----~~~~~vlL~st~~g~~GlNL~~ 732 (815)
..++|||-..-..+....+..|+..|+++.++.|....+.-..+...|++ -++..+++++ |.++++
T Consensus 75 npd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~------GwDy~~ 145 (337)
T COG2247 75 NPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVY------GWDYAD 145 (337)
T ss_pred CCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEEe------ccccHH
Confidence 45799999999999999999999999999999999888877788888863 2356777777 666664
No 410
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=51.69 E-value=19 Score=35.81 Aligned_cols=49 Identities=16% Similarity=0.259 Sum_probs=32.3
Q ss_pred CeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHHHHHHHHHHHHh
Q 003502 144 GILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRF 210 (815)
Q Consensus 144 ~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~ll~qW~~Ei~~~ 210 (815)
.++.-++|+|||+.++.++.......+ .+++.|.-..-..++.+.+..+
T Consensus 22 ~li~G~~GsGKT~l~~q~l~~~~~~~g------------------e~vlyvs~ee~~~~l~~~~~s~ 70 (226)
T PF06745_consen 22 VLISGPPGSGKTTLALQFLYNGLKNFG------------------EKVLYVSFEEPPEELIENMKSF 70 (226)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHHT--------------------EEEEESSS-HHHHHHHHHTT
T ss_pred EEEEeCCCCCcHHHHHHHHHHhhhhcC------------------CcEEEEEecCCHHHHHHHHHHc
Confidence 367779999999999988877655411 3678887544445666665544
No 411
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=51.21 E-value=45 Score=33.07 Aligned_cols=19 Identities=37% Similarity=0.363 Sum_probs=15.0
Q ss_pred CCchHHHHHHHHHhccccc
Q 003502 151 GMGKTIQAIALVLAKREIR 169 (815)
Q Consensus 151 GlGKTi~ai~li~~~~~~~ 169 (815)
|.|||-.+++++..+...+
T Consensus 12 GaGKTT~~~~LAs~la~~G 30 (231)
T PF07015_consen 12 GAGKTTAAMALASELAARG 30 (231)
T ss_pred CCcHHHHHHHHHHHHHHCC
Confidence 8999999988877775543
No 412
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=50.94 E-value=1.3e+02 Score=30.96 Aligned_cols=52 Identities=15% Similarity=0.148 Sum_probs=27.6
Q ss_pred eeeEEEeecceeccCCCchHHHHHHh----hhcC-cEEEeeCCCCCCchhhHHHHHHH
Q 003502 335 KWERIILDEAHFIKDRRSNTAKAVLA----LESS-YKWALSGTPLQNRVGELYSLVRF 387 (815)
Q Consensus 335 ~~~~vIvDEaH~~kn~~s~~~~~~~~----l~~~-~r~~LTgTPi~n~~~el~~ll~~ 387 (815)
++++||||-+=+.-+.. .....+.. .... .-+.|+||--.+...+....++-
T Consensus 154 ~~D~ViIDt~Gr~~~~~-~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~~ 210 (270)
T PRK06731 154 RVDYILIDTAGKNYRAS-ETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD 210 (270)
T ss_pred CCCEEEEECCCCCcCCH-HHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhCC
Confidence 46899999886653222 22222222 2222 24668888765555555544443
No 413
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=50.92 E-value=43 Score=40.62 Aligned_cols=90 Identities=14% Similarity=0.206 Sum_probs=58.0
Q ss_pred CCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcCh-HHHHHHHHHHH---------Hhc
Q 003502 142 RGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-AAVTQWVSEIN---------RFT 211 (815)
Q Consensus 142 ~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-~ll~qW~~Ei~---------~~~ 211 (815)
.+..+..++|+|||.+++.+|..+....+. ..+|||||. ++.....+-|. ..+
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~-----------------~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y 122 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGL-----------------FKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFY 122 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCC-----------------cEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 367889999999999999999888765543 589999995 44444443332 223
Q ss_pred CCCCcEEEEEeCCCCc-----CCccc---c--------cCCCEEEechhhhHH
Q 003502 212 SVGSTKVLIYHGSNRE-----RSAKQ---F--------SEFDFVITTYSIIEA 248 (815)
Q Consensus 212 ~~~~~~v~~~~g~~~~-----~~~~~---~--------~~~~vvi~ty~~l~~ 248 (815)
+...+.+.+|.+..+. ..+.. + ....|.|+|-+.+.+
T Consensus 123 ~~~~~~~~~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~ 175 (986)
T PRK15483 123 ENTRIELYVINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNS 175 (986)
T ss_pred CCceeEEEEEecCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcc
Confidence 3334667777754311 11111 1 135688999998854
No 414
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=50.64 E-value=68 Score=35.80 Aligned_cols=46 Identities=13% Similarity=0.194 Sum_probs=31.3
Q ss_pred eeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHHHHHHHHHHHH
Q 003502 145 ILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINR 209 (815)
Q Consensus 145 ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~ll~qW~~Ei~~ 209 (815)
+|+-++|.|||..++.++......+ +++|.|....-..|.......
T Consensus 98 lI~G~pGsGKTTL~lq~a~~~a~~g-------------------~kvlYvs~EEs~~qi~~ra~r 143 (454)
T TIGR00416 98 LIGGDPGIGKSTLLLQVACQLAKNQ-------------------MKVLYVSGEESLQQIKMRAIR 143 (454)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhcC-------------------CcEEEEECcCCHHHHHHHHHH
Confidence 7788999999999988776554321 367888775445665544433
No 415
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=50.61 E-value=22 Score=36.47 Aligned_cols=43 Identities=16% Similarity=0.046 Sum_probs=30.8
Q ss_pred cchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhcc
Q 003502 121 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 121 ~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~ 166 (815)
.+.+.|.+.+.+++.. ..+..+++-++|+|||-..-+++....
T Consensus 63 g~~~~~~~~l~~~~~~---~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 63 GLKPENLEIFRKLLEK---PHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCCHHHHHHHHHHHhc---CCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 3567788888776653 112357899999999999877776653
No 416
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=50.48 E-value=40 Score=40.32 Aligned_cols=71 Identities=14% Similarity=0.072 Sum_probs=48.6
Q ss_pred ccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcCh-H
Q 003502 120 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-A 198 (815)
Q Consensus 120 ~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-~ 198 (815)
..|-|-|++++..- . +..++.--.|+|||.+.+.-++++....+. +...+|+|..+ .
T Consensus 3 ~~Ln~~Q~~av~~~------~-g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v---------------~p~~IL~lTFTnk 60 (715)
T TIGR01075 3 DGLNDKQREAVAAP------P-GNLLVLAGAGSGKTRVLTHRIAWLLSVENA---------------SPHSIMAVTFTNK 60 (715)
T ss_pred cccCHHHHHHHcCC------C-CCEEEEecCCCCHHHHHHHHHHHHHHcCCC---------------CHHHeEeeeccHH
Confidence 35889999988641 1 245555689999999998888887653322 12588999994 4
Q ss_pred HHHHHHHHHHHhcC
Q 003502 199 AVTQWVSEINRFTS 212 (815)
Q Consensus 199 ll~qW~~Ei~~~~~ 212 (815)
....-.+-+.+.++
T Consensus 61 AA~em~~Rl~~~~~ 74 (715)
T TIGR01075 61 AAAEMRHRIGALLG 74 (715)
T ss_pred HHHHHHHHHHHHhc
Confidence 45666666766654
No 417
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=50.45 E-value=9 Score=44.63 Aligned_cols=47 Identities=28% Similarity=0.676 Sum_probs=36.7
Q ss_pred hhcCcccccCC-------CCccccCCchhhhhhHhhhccccCCCCCCCCCCCcc
Q 003502 559 QVCGLCNDLAD-------DPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 605 (815)
Q Consensus 559 ~~~~~~~~~~~-------~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~ 605 (815)
.+|.+|..... .-.-..|.|-|...|+.++.++.....||.||..++
T Consensus 1470 eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1470 EECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred chhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 45999964432 223456889999999999999999999999997653
No 418
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=50.34 E-value=80 Score=27.67 Aligned_cols=96 Identities=14% Similarity=0.086 Sum_probs=59.7
Q ss_pred CcchHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCC---CcEEEEecCCCHHHHHHHHHhhcCCCCceEE
Q 003502 641 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSG---VNCVQLVGSMSIPARDAAINRFTEDPDCKIF 717 (815)
Q Consensus 641 ~~s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g---~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vl 717 (815)
.++.|-..+...+......+...++||++........+...+.... ..+..+++........ ... .....++
T Consensus 9 ~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~i~ 83 (144)
T cd00046 9 TGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE---KLL--SGKTDIV 83 (144)
T ss_pred CCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH---HHh--cCCCCEE
Confidence 4577877777777776665566799999999988877776665543 7777777776544433 111 1255667
Q ss_pred EEecCCCcccccc----cccCEEEEeCC
Q 003502 718 LMSLKAGGVALNL----TVASHVFLMDP 741 (815)
Q Consensus 718 L~st~~g~~GlNL----~~a~~vI~~d~ 741 (815)
+++.......+.. .....+|++|-
T Consensus 84 i~t~~~~~~~~~~~~~~~~~~~~iiiDE 111 (144)
T cd00046 84 VGTPGRLLDELERLKLSLKKLDLLILDE 111 (144)
T ss_pred EECcHHHHHHHHcCCcchhcCCEEEEeC
Confidence 7665544443332 23444566664
No 419
>PRK08939 primosomal protein DnaI; Reviewed
Probab=50.33 E-value=45 Score=35.03 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=21.4
Q ss_pred CCCeeeccCCCchHHHHHHHHHhccc
Q 003502 142 RGGILADEMGMGKTIQAIALVLAKRE 167 (815)
Q Consensus 142 ~g~ILade~GlGKTi~ai~li~~~~~ 167 (815)
+|.+|.-.+|+|||..+.|++..+..
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~ 182 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAK 182 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57778889999999999888777653
No 420
>PRK05973 replicative DNA helicase; Provisional
Probab=50.16 E-value=16 Score=36.53 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=19.9
Q ss_pred CeeeccCCCchHHHHHHHHHhccc
Q 003502 144 GILADEMGMGKTIQAIALVLAKRE 167 (815)
Q Consensus 144 ~ILade~GlGKTi~ai~li~~~~~ 167 (815)
.+|+-.+|+|||..++-++.....
T Consensus 67 ~LIaG~PG~GKT~lalqfa~~~a~ 90 (237)
T PRK05973 67 VLLGARPGHGKTLLGLELAVEAMK 90 (237)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHh
Confidence 478999999999999888776643
No 421
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=50.13 E-value=1.5e+02 Score=34.16 Aligned_cols=118 Identities=13% Similarity=0.135 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhCCCc-------EEEEecCCCHHHHHHHHHhhcC--CCCceEE
Q 003502 647 EALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVN-------CVQLVGSMSIPARDAAINRFTE--DPDCKIF 717 (815)
Q Consensus 647 ~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~-------~~~i~G~~~~~~R~~~i~~F~~--~~~~~vl 717 (815)
+.|-..+..+...-+ .-||+|-.+-..+..+...++..|+- -+.+-...+ -.++++.|.. +.+.-.|
T Consensus 615 ~~l~~~~~nL~~~VP-gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~Gai 690 (821)
T KOG1133|consen 615 KDLGSSISNLSNAVP-GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAI 690 (821)
T ss_pred HHHHHHHHHHHhhCC-CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeE
Confidence 344444444444334 47899988888888888888877643 111111111 2356667754 1122345
Q ss_pred EEec--CCCcccccccc--cCEEEEeCCCCC--------------------cc------------hHHHHhHhhhcCCCC
Q 003502 718 LMSL--KAGGVALNLTV--ASHVFLMDPWWN--------------------PA------------VEQQAQDRIHRIGQY 761 (815)
Q Consensus 718 L~st--~~g~~GlNL~~--a~~vI~~d~~wn--------------------p~------------~~~QaigR~~R~GQ~ 761 (815)
|++. .-.+||||+.+ |..||.+-.|+- |. ...|+||||.|--..
T Consensus 691 LlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~D 770 (821)
T KOG1133|consen 691 LLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKD 770 (821)
T ss_pred EEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 5552 44468999983 666777776654 21 346999999995432
Q ss_pred CcEEEEEE
Q 003502 762 KPIRIVRF 769 (815)
Q Consensus 762 ~~V~vy~l 769 (815)
- ..||-|
T Consensus 771 Y-A~i~Ll 777 (821)
T KOG1133|consen 771 Y-ASIYLL 777 (821)
T ss_pred c-eeEEEe
Confidence 2 445544
No 422
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.11 E-value=7.9 Score=38.19 Aligned_cols=48 Identities=23% Similarity=0.573 Sum_probs=37.0
Q ss_pred hhhcCcccccCC----------CCccccCCchhhhhhHhhhccccCCCCCCCCCCCcc
Q 003502 558 QQVCGLCNDLAD----------DPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 605 (815)
Q Consensus 558 ~~~~~~~~~~~~----------~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~ 605 (815)
+.+|.+|..... ..-.++|+|.|-..|+.-+---.....||.|...+.
T Consensus 224 d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 224 DSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred cchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 457888864432 223679999999999988887788999999987654
No 423
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=48.73 E-value=10 Score=38.28 Aligned_cols=41 Identities=27% Similarity=0.571 Sum_probs=29.5
Q ss_pred hcCcccccC-CCCccccCCchhhhhhHhhhccccCCCCCCCCCCCc
Q 003502 560 VCGLCNDLA-DDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPL 604 (815)
Q Consensus 560 ~~~~~~~~~-~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~ 604 (815)
.|..|...+ --.....|.|+||.+|..... ...||.|.-.+
T Consensus 92 fCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~----dK~Cp~C~d~V 133 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGRMIPCKHVFCLECARSDS----DKICPLCDDRV 133 (389)
T ss_pred eecccCCcceeeecccccchhhhhhhhhcCc----cccCcCcccHH
Confidence 477777654 344678999999999985433 66888887554
No 424
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=48.65 E-value=17 Score=26.15 Aligned_cols=41 Identities=27% Similarity=0.607 Sum_probs=32.3
Q ss_pred cCcccc--cCCCCccccCC-----chhhhhhHhhhccccCCCCCCCCC
Q 003502 561 CGLCND--LADDPVVTNCG-----HAFCKACLFDSSASKFVAKCPTCS 601 (815)
Q Consensus 561 ~~~~~~--~~~~~~~~~~~-----~~~c~~c~~~~~~~~~~~~~~~~~ 601 (815)
|.+|.+ ..+++++.+|. +.+-..|+..+........||.|.
T Consensus 2 CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 2 CRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred ccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 566765 45666788884 789999999999888888999884
No 425
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=48.52 E-value=32 Score=40.74 Aligned_cols=69 Identities=13% Similarity=0.060 Sum_probs=45.9
Q ss_pred chHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcC-hHHH
Q 003502 122 LLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VAAV 200 (815)
Q Consensus 122 L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P-~~ll 200 (815)
|-|-|+.++.+. . +..++---.|+|||.+.+.-+.++....+. +...+|+|.. ....
T Consensus 2 Ln~~Q~~av~~~------~-~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~---------------~p~~IL~vTFt~~Aa 59 (664)
T TIGR01074 2 LNPQQQEAVEYV------T-GPCLVLAGAGSGKTRVITNKIAYLIQNCGY---------------KARNIAAVTFTNKAA 59 (664)
T ss_pred CCHHHHHHHhCC------C-CCEEEEecCCCCHHHHHHHHHHHHHHhcCC---------------CHHHeEEEeccHHHH
Confidence 667888887542 1 244555578999999998888877643221 1146677766 5666
Q ss_pred HHHHHHHHHhcC
Q 003502 201 TQWVSEINRFTS 212 (815)
Q Consensus 201 ~qW~~Ei~~~~~ 212 (815)
..-.+.+.+.++
T Consensus 60 ~em~~Rl~~~l~ 71 (664)
T TIGR01074 60 REMKERVAKTLG 71 (664)
T ss_pred HHHHHHHHHHhC
Confidence 777777777654
No 426
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=48.22 E-value=1e+02 Score=39.99 Aligned_cols=43 Identities=26% Similarity=0.249 Sum_probs=30.0
Q ss_pred ccccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHH
Q 003502 118 LITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVL 163 (815)
Q Consensus 118 ~~~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~ 163 (815)
+...|-+-|++++..++..-. +-.+|---.|+|||.+.-+++.
T Consensus 832 ~~~~Lt~~Qr~Av~~iLts~d---r~~~IqG~AGTGKTT~l~~i~~ 874 (1623)
T PRK14712 832 LMEKLTSGQRAATRMILETSD---RFTVVQGYAGVGKTTQFRAVMS 874 (1623)
T ss_pred hhcccCHHHHHHHHHHHhCCC---ceEEEEeCCCCCHHHHHHHHHH
Confidence 334689999999987764322 3456666789999998644443
No 427
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=48.20 E-value=13 Score=26.52 Aligned_cols=29 Identities=31% Similarity=0.859 Sum_probs=16.1
Q ss_pred cCCchhhhhhHhhhccccCCCCCCCCCCCc
Q 003502 575 NCGHAFCKACLFDSSASKFVAKCPTCSIPL 604 (815)
Q Consensus 575 ~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~ 604 (815)
.|+..+|..|..+... .....||.|+.++
T Consensus 19 ~Cgf~IC~~C~~~i~~-~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 19 ECGFQICRFCYHDILE-NEGGRCPGCREPY 47 (48)
T ss_dssp TTS----HHHHHHHTT-SS-SB-TTT--B-
T ss_pred cCCCcHHHHHHHHHHh-ccCCCCCCCCCCC
Confidence 6789999999877666 4688999999775
No 428
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.89 E-value=4.9 Score=40.08 Aligned_cols=41 Identities=32% Similarity=0.838 Sum_probs=33.5
Q ss_pred hhhcCcccccCCCCccccCCch-hhhhhHhhhccccCCCCCCCCCCCc
Q 003502 558 QQVCGLCNDLADDPVVTNCGHA-FCKACLFDSSASKFVAKCPTCSIPL 604 (815)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~-~c~~c~~~~~~~~~~~~~~~~~~~~ 604 (815)
+..|.+|.+.+.+-+++.|||. -|..|-.. ...||.|+..+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr------m~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR------MNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccc------cccCchHHHHH
Confidence 7889999999999999999994 78887633 33899998653
No 429
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=47.83 E-value=1.2e+02 Score=32.74 Aligned_cols=54 Identities=19% Similarity=0.220 Sum_probs=32.1
Q ss_pred eeEEEeecc-eeccCCCchHHHHHHhh-----hcCcEEEeeCCCCCCchhhHHHHHHHhccC
Q 003502 336 WERIILDEA-HFIKDRRSNTAKAVLAL-----ESSYKWALSGTPLQNRVGELYSLVRFLQIT 391 (815)
Q Consensus 336 ~~~vIvDEa-H~~kn~~s~~~~~~~~l-----~~~~r~~LTgTPi~n~~~el~~ll~~L~~~ 391 (815)
.|+|.||=+ +..++.. . ..-+..+ ....-+.||+|-=...+.+++..++++.+.
T Consensus 282 ~d~ILVDTaGrs~~D~~-~-i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~ 341 (407)
T COG1419 282 CDVILVDTAGRSQYDKE-K-IEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPID 341 (407)
T ss_pred CCEEEEeCCCCCccCHH-H-HHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCCcc
Confidence 477888843 4444431 1 1112222 233448899998888888888888777643
No 430
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=47.74 E-value=25 Score=38.82 Aligned_cols=25 Identities=28% Similarity=0.211 Sum_probs=19.6
Q ss_pred CCeeeccCCCchHHHHHHHHHhccc
Q 003502 143 GGILADEMGMGKTIQAIALVLAKRE 167 (815)
Q Consensus 143 g~ILade~GlGKTi~ai~li~~~~~ 167 (815)
-.+++-.+|+|||.++..++..+..
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~ 121 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKK 121 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3466779999999999887776653
No 431
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.69 E-value=1.4e+02 Score=34.86 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=18.7
Q ss_pred CCeeeccCCCchHHHHHHHHHhcc
Q 003502 143 GGILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 143 g~ILade~GlGKTi~ai~li~~~~ 166 (815)
..|+.-+.|.|||-.|..++..+.
T Consensus 41 ayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 41 AYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 357889999999998876666553
No 432
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=47.44 E-value=9.9 Score=33.79 Aligned_cols=23 Identities=35% Similarity=0.294 Sum_probs=16.2
Q ss_pred CeeeccCCCchHHHHHHHHHhcc
Q 003502 144 GILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 144 ~ILade~GlGKTi~ai~li~~~~ 166 (815)
.+|-+.+|+|||..+.+++...-
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~ 24 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLG 24 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT
T ss_pred EeeECCCccHHHHHHHHHHHHcC
Confidence 57889999999999988777653
No 433
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=46.94 E-value=42 Score=40.15 Aligned_cols=71 Identities=14% Similarity=0.105 Sum_probs=47.6
Q ss_pred ccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcCh-H
Q 003502 120 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-A 198 (815)
Q Consensus 120 ~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-~ 198 (815)
..|-|-|++++.+- . +..++---.|+|||.+.+.-++++....+. +...+|+|.-+ .
T Consensus 8 ~~Ln~~Q~~av~~~------~-g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v---------------~p~~IL~lTFT~k 65 (721)
T PRK11773 8 DSLNDKQREAVAAP------L-GNMLVLAGAGSGKTRVLVHRIAWLMQVENA---------------SPYSIMAVTFTNK 65 (721)
T ss_pred HhcCHHHHHHHhCC------C-CCEEEEecCCCCHHHHHHHHHHHHHHcCCC---------------ChhHeEeeeccHH
Confidence 45889999988642 1 234555579999999998888877653322 12578999984 4
Q ss_pred HHHHHHHHHHHhcC
Q 003502 199 AVTQWVSEINRFTS 212 (815)
Q Consensus 199 ll~qW~~Ei~~~~~ 212 (815)
....-.+-+.+.++
T Consensus 66 AA~Em~~Rl~~~~~ 79 (721)
T PRK11773 66 AAAEMRHRIEQLLG 79 (721)
T ss_pred HHHHHHHHHHHHhc
Confidence 44556666666554
No 434
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=46.78 E-value=2.7e+02 Score=26.97 Aligned_cols=99 Identities=10% Similarity=0.028 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHh----cCCCceEEEEccChh----HHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEE
Q 003502 646 IEALREEIRFMVE----RDGSAKGIVFSQFTS----FLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIF 717 (815)
Q Consensus 646 l~~l~~~l~~~~~----~~~~~KvIIFs~~~~----~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vl 717 (815)
+...+..|...+. .....++|++|---+ =+.++..+|+..|+.+..+-.+++.++=.+.+.+. ++.++
T Consensus 64 ~~~~l~~l~~~~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~----~pd~v 139 (197)
T TIGR02370 64 MLAGIKVLTPEMEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKE----KPLML 139 (197)
T ss_pred HHHHHHHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHc----CCCEE
Confidence 4444455544443 122357888875433 36788899999999999998888887766666665 45566
Q ss_pred EEecCCCcccccccccCEEEEeCCCCCcchHHHHhHhhhcCCCCCcEEE
Q 003502 718 LMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRI 766 (815)
Q Consensus 718 L~st~~g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~v 766 (815)
.+|.... -+.....+.+..+.+.|....+.|
T Consensus 140 ~lS~~~~------------------~~~~~~~~~i~~l~~~~~~~~v~i 170 (197)
T TIGR02370 140 TGSALMT------------------TTMYGQKDINDKLKEEGYRDSVKF 170 (197)
T ss_pred EEccccc------------------cCHHHHHHHHHHHHHcCCCCCCEE
Confidence 6663221 234456677777777776655554
No 435
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=46.71 E-value=1.3e+02 Score=31.63 Aligned_cols=26 Identities=15% Similarity=0.322 Sum_probs=22.0
Q ss_pred CCCeeeccCCCchHHHHHHHHHhccc
Q 003502 142 RGGILADEMGMGKTIQAIALVLAKRE 167 (815)
Q Consensus 142 ~g~ILade~GlGKTi~ai~li~~~~~ 167 (815)
+.-|+.-+.|.||+..|.+++..+.-
T Consensus 27 ha~Lf~G~~G~Gk~~~A~~~a~~llc 52 (314)
T PRK07399 27 PAYLFAGPEGVGRKLAALCFIEGLLS 52 (314)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 46688899999999999998887763
No 436
>PRK10867 signal recognition particle protein; Provisional
Probab=46.62 E-value=36 Score=37.53 Aligned_cols=25 Identities=24% Similarity=0.159 Sum_probs=19.9
Q ss_pred CeeeccCCCchHHHHHHHHHhcccc
Q 003502 144 GILADEMGMGKTIQAIALVLAKREI 168 (815)
Q Consensus 144 ~ILade~GlGKTi~ai~li~~~~~~ 168 (815)
.+++-..|+|||.++.-++.++...
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHh
Confidence 4667799999999998888776544
No 437
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=46.15 E-value=29 Score=36.58 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=21.9
Q ss_pred cCCCCeeeccCCCchHHHHHHHHHhc
Q 003502 140 AIRGGILADEMGMGKTIQAIALVLAK 165 (815)
Q Consensus 140 ~~~g~ILade~GlGKTi~ai~li~~~ 165 (815)
+.+|.||--.+|+|||+.|=|++...
T Consensus 184 PPKGVLLYGPPGTGKTLLAkAVA~~T 209 (406)
T COG1222 184 PPKGVLLYGPPGTGKTLLAKAVANQT 209 (406)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 45799999999999999997777654
No 438
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=46.10 E-value=30 Score=36.65 Aligned_cols=52 Identities=17% Similarity=0.033 Sum_probs=30.0
Q ss_pred CCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHHHHHHHHH
Q 003502 151 GMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSE 206 (815)
Q Consensus 151 GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~ll~qW~~E 206 (815)
|+|||=.++.++..+...+...+- -++..|.-..+..++|.|.+...+--+|
T Consensus 47 GTGKTP~v~~L~~~L~~~G~~~~I----lSRGYg~~~~~~~~~v~~~~~~~~~GDE 98 (326)
T PF02606_consen 47 GTGKTPLVIWLARLLQARGYRPAI----LSRGYGRKSKGEPILVSDGSDAEEVGDE 98 (326)
T ss_pred CCCchHHHHHHHHHHHhcCCceEE----EcCCCCCCCCCCeEEEeCCCChhhhcCH
Confidence 999999999999888765432111 1222222222346777776644333344
No 439
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=46.06 E-value=79 Score=33.97 Aligned_cols=20 Identities=30% Similarity=0.599 Sum_probs=13.6
Q ss_pred CccceeeEEEeecceeccCC
Q 003502 331 LHSLKWERIILDEAHFIKDR 350 (815)
Q Consensus 331 l~~~~~~~vIvDEaH~~kn~ 350 (815)
+....++.||+||+-.+...
T Consensus 93 ~~G~~~~~i~iDE~~~~~~~ 112 (384)
T PF03237_consen 93 IRGFEYDLIIIDEAAKVPDD 112 (384)
T ss_dssp HHTS--SEEEEESGGGSTTH
T ss_pred ccccccceeeeeecccCchH
Confidence 44457889999998888553
No 440
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=45.74 E-value=28 Score=39.72 Aligned_cols=46 Identities=20% Similarity=0.232 Sum_probs=34.3
Q ss_pred ccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhcc
Q 003502 120 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 120 ~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~ 166 (815)
.++|+-|.+-.+-+.+-+..+ +-||+--++|+|||+..|...+..+
T Consensus 14 y~PYdIQ~~lM~elyrvLe~G-kIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 14 YTPYDIQEDLMRELYRVLEEG-KIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred CCchhHHHHHHHHHHHHHhcC-CeeeeeCCCCCCchHHHHHHHHHHH
Confidence 557888987777766666655 4889999999999998765544433
No 441
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=45.55 E-value=56 Score=35.37 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=20.3
Q ss_pred CCCCeeeccCCCchHHHHHHHHHhc
Q 003502 141 IRGGILADEMGMGKTIQAIALVLAK 165 (815)
Q Consensus 141 ~~g~ILade~GlGKTi~ai~li~~~ 165 (815)
.+|.+|.-++|+|||..+-+++...
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhC
Confidence 3578999999999999987776544
No 442
>COG4646 DNA methylase [Transcription / DNA replication, recombination, and repair]
Probab=45.41 E-value=12 Score=40.10 Aligned_cols=30 Identities=33% Similarity=0.554 Sum_probs=25.9
Q ss_pred cCcEEEeeCCCCCCchhhHHHHHHHhccCC
Q 003502 363 SSYKWALSGTPLQNRVGELYSLVRFLQITP 392 (815)
Q Consensus 363 ~~~r~~LTgTPi~n~~~el~~ll~~L~~~~ 392 (815)
.++..++||||+.|.+.|+|++-++|+++.
T Consensus 473 G~~L~l~sgTpi~ntlgem~~vqRyl~~~a 502 (637)
T COG4646 473 GRALVLASGTPITNTLGEMFSVQRYLGAGA 502 (637)
T ss_pred CCeEEecCCCchhhhHHhhhhhhhhcCccH
Confidence 455688999999999999999999998653
No 443
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=45.32 E-value=27 Score=38.19 Aligned_cols=24 Identities=38% Similarity=0.394 Sum_probs=20.0
Q ss_pred CCCCeeeccCCCchHHHHHHHHHh
Q 003502 141 IRGGILADEMGMGKTIQAIALVLA 164 (815)
Q Consensus 141 ~~g~ILade~GlGKTi~ai~li~~ 164 (815)
.+|.+|.-++|+|||..+-+++..
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 468899999999999998666554
No 444
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=45.24 E-value=18 Score=39.28 Aligned_cols=51 Identities=24% Similarity=0.356 Sum_probs=41.4
Q ss_pred ccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHHHHHHHHHHHHhc
Q 003502 139 SAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRFT 211 (815)
Q Consensus 139 ~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~ll~qW~~Ei~~~~ 211 (815)
...+|-+|.-+.|.|||+.+.+++.... ..+.=|.|.+|..-|.-|..+..
T Consensus 184 ~p~rglLLfGPpgtGKtmL~~aiAsE~~----------------------atff~iSassLtsK~~Ge~eK~v 234 (428)
T KOG0740|consen 184 EPVRGLLLFGPPGTGKTMLAKAIATESG----------------------ATFFNISASSLTSKYVGESEKLV 234 (428)
T ss_pred cccchhheecCCCCchHHHHHHHHhhhc----------------------ceEeeccHHHhhhhccChHHHHH
Confidence 3556889999999999999988887764 36677888999999988876653
No 445
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=45.07 E-value=28 Score=37.99 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=20.2
Q ss_pred CCCCeeeccCCCchHHHHHHHHHhc
Q 003502 141 IRGGILADEMGMGKTIQAIALVLAK 165 (815)
Q Consensus 141 ~~g~ILade~GlGKTi~ai~li~~~ 165 (815)
.+|.+|.-++|+|||..|-+++...
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHh
Confidence 4678999999999999987765543
No 446
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=44.79 E-value=35 Score=37.84 Aligned_cols=28 Identities=36% Similarity=0.508 Sum_probs=21.8
Q ss_pred ccCCCCeeeccCCCchHHHH--HHHHHhcc
Q 003502 139 SAIRGGILADEMGMGKTIQA--IALVLAKR 166 (815)
Q Consensus 139 ~~~~g~ILade~GlGKTi~a--i~li~~~~ 166 (815)
.+++|-||--++|+|||++| |+-++..+
T Consensus 254 ~HVKGiLLyGPPGTGKTLiARqIGkMLNAr 283 (744)
T KOG0741|consen 254 KHVKGILLYGPPGTGKTLIARQIGKMLNAR 283 (744)
T ss_pred cceeeEEEECCCCCChhHHHHHHHHHhcCC
Confidence 45678999999999999998 55555443
No 447
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=44.68 E-value=36 Score=27.95 Aligned_cols=37 Identities=16% Similarity=0.122 Sum_probs=30.2
Q ss_pred CCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCC
Q 003502 661 GSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMS 697 (815)
Q Consensus 661 ~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~ 697 (815)
++.++|+||..-.........|...|+++..++|+++
T Consensus 50 ~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 50 KDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred CCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 4578999998766677778889999998888999874
No 448
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=44.32 E-value=15 Score=37.04 Aligned_cols=33 Identities=36% Similarity=0.903 Sum_probs=27.5
Q ss_pred ccccCCchhhhhhHhhhccccCCCCCCCCCCCcc
Q 003502 572 VVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 605 (815)
Q Consensus 572 ~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~ 605 (815)
.+-.|+|-.|.+|. +..-+.+...||.|...+-
T Consensus 19 ~in~C~H~lCEsCv-d~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 19 MINECGHRLCESCV-DRIFSLGPAQCPECMVILR 51 (300)
T ss_pred eeccccchHHHHHH-HHHHhcCCCCCCcccchhh
Confidence 35599999999998 6677788999999987764
No 449
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=44.08 E-value=11 Score=39.20 Aligned_cols=40 Identities=20% Similarity=0.161 Sum_probs=29.6
Q ss_pred eEEEeecceeccCCCchHHHHHHhhhcCcEEEeeCCCCCCch
Q 003502 337 ERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRV 378 (815)
Q Consensus 337 ~~vIvDEaH~~kn~~s~~~~~~~~l~~~~r~~LTgTPi~n~~ 378 (815)
-+||+||||+ . .-.+.-..+.+|....+..+||.+.|-.+
T Consensus 245 AfVIlDEaQN-t-T~~QmKMfLTRiGf~skmvItGD~tQiDL 284 (348)
T COG1702 245 AFVILDEAQN-T-TVGQMKMFLTRIGFESKMVITGDITQIDL 284 (348)
T ss_pred eEEEEecccc-c-chhhhceeeeeecCCceEEEEcCcccccC
Confidence 4799999998 2 22344445567788999999999987543
No 450
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=43.90 E-value=1.9e+02 Score=32.90 Aligned_cols=21 Identities=29% Similarity=0.267 Sum_probs=15.5
Q ss_pred eeccCCCchHHHHHHHHHhcc
Q 003502 146 LADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 146 Lade~GlGKTi~ai~li~~~~ 166 (815)
|.-..|.|||.++..++..+.
T Consensus 355 LVGPtGvGKTTtaakLAa~la 375 (559)
T PRK12727 355 LVGPTGAGKTTTIAKLAQRFA 375 (559)
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 445799999999877666543
No 451
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=43.68 E-value=11 Score=47.67 Aligned_cols=93 Identities=12% Similarity=0.078 Sum_probs=69.7
Q ss_pred EEEccChhHHHHHHHHHHhCC-CcEEEEecCCCH-----------HHHHHHHHhhcCCCCceEEEEecCCCccccccccc
Q 003502 666 IVFSQFTSFLDLINYSLHKSG-VNCVQLVGSMSI-----------PARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVA 733 (815)
Q Consensus 666 IIFs~~~~~~~~l~~~L~~~g-~~~~~i~G~~~~-----------~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a 733 (815)
|+|+....+...+...+...+ .....++|.+.. -.+.+.+..|... ++++|+ .|.+.-+|+|+..|
T Consensus 296 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~-~ln~L~-~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 296 IIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFH-ELNLLI-ATSVLEEGVDVPKC 373 (1606)
T ss_pred eeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhh-hhhHHH-HHHHHHhhcchhhh
Confidence 899988888777766665542 223335665431 1245677777765 777766 66999999999999
Q ss_pred CEEEEeCCCCCcchHHHHhHhhhcCCC
Q 003502 734 SHVFLMDPWWNPAVEQQAQDRIHRIGQ 760 (815)
Q Consensus 734 ~~vI~~d~~wnp~~~~QaigR~~R~GQ 760 (815)
+-+++++.+-+-..+.|+.||+.+.+-
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~~ 400 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAADS 400 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccchh
Confidence 999999999999999999999977654
No 452
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=43.12 E-value=98 Score=28.42 Aligned_cols=56 Identities=11% Similarity=0.002 Sum_probs=41.0
Q ss_pred eEEEEccC-------hhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcC----CCCceEEEE
Q 003502 664 KGIVFSQF-------TSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTE----DPDCKIFLM 719 (815)
Q Consensus 664 KvIIFs~~-------~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~----~~~~~vlL~ 719 (815)
+|+||+.. -..-..+..+|+..+++|..++=++....++++.+.... ..-++||+-
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~ 67 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVD 67 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEEC
Confidence 57888876 344677889999999999999988888878887766543 234556653
No 453
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=42.61 E-value=1.2e+02 Score=33.22 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=16.9
Q ss_pred eeeccCCCchHHHHHHHHHhc
Q 003502 145 ILADEMGMGKTIQAIALVLAK 165 (815)
Q Consensus 145 ILade~GlGKTi~ai~li~~~ 165 (815)
++.-..|+|||-++.-++...
T Consensus 227 ~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 227 FFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 466799999999998777654
No 454
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=42.44 E-value=13 Score=43.46 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=20.2
Q ss_pred CCCCeeeccCCCchHHHHHHHHHh
Q 003502 141 IRGGILADEMGMGKTIQAIALVLA 164 (815)
Q Consensus 141 ~~g~ILade~GlGKTi~ai~li~~ 164 (815)
.+|+||.-++|+|||+-|-|.+-.
T Consensus 344 PkGvLL~GPPGTGKTLLAKAiAGE 367 (774)
T KOG0731|consen 344 PKGVLLVGPPGTGKTLLAKAIAGE 367 (774)
T ss_pred cCceEEECCCCCcHHHHHHHHhcc
Confidence 379999999999999998776543
No 455
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=42.13 E-value=16 Score=35.62 Aligned_cols=27 Identities=30% Similarity=0.322 Sum_probs=22.6
Q ss_pred CeeeccCCCchHHHHHHHHHhcccccc
Q 003502 144 GILADEMGMGKTIQAIALVLAKREIRG 170 (815)
Q Consensus 144 ~ILade~GlGKTi~ai~li~~~~~~~~ 170 (815)
.|.+-++|.|||..+++++..+.+.+.
T Consensus 4 ~I~~t~t~vGKT~vslgL~~~l~~~g~ 30 (199)
T PF13500_consen 4 FITGTDTGVGKTVVSLGLARALRRRGI 30 (199)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHHTTS
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHhCCC
Confidence 367889999999999999988876544
No 456
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=41.87 E-value=1.8e+02 Score=29.24 Aligned_cols=111 Identities=9% Similarity=0.104 Sum_probs=71.6
Q ss_pred cChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCC--ceEEEEecCCCcccccccccCEEEEeCCCCCcch
Q 003502 670 QFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPD--CKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAV 747 (815)
Q Consensus 670 ~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~--~~vlL~st~~g~~GlNL~~a~~vI~~d~~wnp~~ 747 (815)
.|.+..+.|...+.. |+.+..++++.+... -.|.+++. ..+|++.-...+.|+.|.+-....+.-.+-+..+
T Consensus 95 s~~ei~~~l~~~~~~-~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DT 168 (239)
T PF10593_consen 95 SWEEIKPELPKAISD-GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDT 168 (239)
T ss_pred CHHHHHHHHHHHHhc-CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHH
Confidence 455666667777776 789999997665433 44544322 4777778899999999998888877776666666
Q ss_pred HHHHhHhhhcCCCCCc-EEEEEEEeCCcHHHHHHHHHHHHHHH
Q 003502 748 EQQAQDRIHRIGQYKP-IRIVRFLIENTIEERILKLQEKKKLV 789 (815)
Q Consensus 748 ~~QaigR~~R~GQ~~~-V~vy~l~~~~TiEe~i~~~~~~K~~~ 789 (815)
+.| +||-. |=.+. ..+-|+.+...+.+..-++...=..+
T Consensus 169 L~Q-mgRwF--GYR~gY~dl~Ri~~~~~l~~~f~~i~~~~e~l 208 (239)
T PF10593_consen 169 LMQ-MGRWF--GYRPGYEDLCRIYMPEELYDWFRHIAEAEEEL 208 (239)
T ss_pred HHH-Hhhcc--cCCcccccceEEecCHHHHHHHHHHHHHHHHH
Confidence 666 46653 43333 44556666666655555444433333
No 457
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=41.84 E-value=38 Score=33.60 Aligned_cols=47 Identities=13% Similarity=0.145 Sum_probs=32.3
Q ss_pred eeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHHHHHHHHHHHHh
Q 003502 145 ILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRF 210 (815)
Q Consensus 145 ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~ll~qW~~Ei~~~ 210 (815)
+++-++|+|||..++.++......+ .+++.|.-..-..+-.+.+..+
T Consensus 20 li~G~~G~GKt~~~~~~~~~~~~~g-------------------~~~~y~s~e~~~~~l~~~~~~~ 66 (224)
T TIGR03880 20 VVIGEYGTGKTTFSLQFLYQGLKNG-------------------EKAMYISLEEREERILGYAKSK 66 (224)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCC-------------------CeEEEEECCCCHHHHHHHHHHc
Confidence 6678899999999988876654322 4778887755555555555443
No 458
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=41.66 E-value=61 Score=28.81 Aligned_cols=38 Identities=13% Similarity=0.216 Sum_probs=29.5
Q ss_pred CCCceEEEEccC-hhHHHHHHHHHHhCCCcEEEEecCCC
Q 003502 660 DGSAKGIVFSQF-TSFLDLINYSLHKSGVNCVQLVGSMS 697 (815)
Q Consensus 660 ~~~~KvIIFs~~-~~~~~~l~~~L~~~g~~~~~i~G~~~ 697 (815)
.++.++||||+. -.........|+..|+++..++|+++
T Consensus 84 ~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~~ 122 (128)
T cd01520 84 ERDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYK 122 (128)
T ss_pred CCCCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcHH
Confidence 346789999974 34566666888888999888999874
No 459
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=41.12 E-value=33 Score=38.65 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=29.8
Q ss_pred cchHHHHHHHHHHHHHhhccCCC-CeeeccCCCchHHHHHHHHHhc
Q 003502 121 PLLRYQKEWLAWALKQEESAIRG-GILADEMGMGKTIQAIALVLAK 165 (815)
Q Consensus 121 ~L~~yQ~~~~~~~~~~~~~~~~g-~ILade~GlGKTi~ai~li~~~ 165 (815)
.+-|.|.+.+.+++.. . +| .+++-++|+|||-+.-+++...
T Consensus 225 g~~~~~~~~l~~~~~~---~-~GlilitGptGSGKTTtL~a~L~~l 266 (486)
T TIGR02533 225 GMSPELLSRFERLIRR---P-HGIILVTGPTGSGKTTTLYAALSRL 266 (486)
T ss_pred CCCHHHHHHHHHHHhc---C-CCEEEEEcCCCCCHHHHHHHHHhcc
Confidence 3567888888877654 1 23 3678999999999987766554
No 460
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=41.01 E-value=1.2e+02 Score=23.47 Aligned_cols=57 Identities=16% Similarity=0.155 Sum_probs=37.3
Q ss_pred eEEEEccCh-hHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEe
Q 003502 664 KGIVFSQFT-SFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMS 720 (815)
Q Consensus 664 KvIIFs~~~-~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~s 720 (815)
|+.||+... .....+..+|...|++|..++-....+.++++.........+-++++.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~ 58 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIG 58 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEEC
Confidence 467776543 446677788888999999988877766776666665433133333434
No 461
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=40.80 E-value=52 Score=34.75 Aligned_cols=40 Identities=20% Similarity=0.171 Sum_probs=26.8
Q ss_pred chHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhc
Q 003502 122 LLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAK 165 (815)
Q Consensus 122 L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~ 165 (815)
+.+.|...+..++.. ..+.|++-.||+|||-.+-+++...
T Consensus 129 ~~~~~~~~L~~~v~~----~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 129 MTEAQASVIRSAIDS----RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCHHHHHHHHHHHHc----CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 334555555444432 2467889999999999887776654
No 462
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=40.67 E-value=66 Score=27.00 Aligned_cols=38 Identities=16% Similarity=0.113 Sum_probs=28.6
Q ss_pred CCCceEEEEccChhHHHHHHHHHHhCCCc-EEEEecCCC
Q 003502 660 DGSAKGIVFSQFTSFLDLINYSLHKSGVN-CVQLVGSMS 697 (815)
Q Consensus 660 ~~~~KvIIFs~~~~~~~~l~~~L~~~g~~-~~~i~G~~~ 697 (815)
.++.++||||+.-.........|...|+. +..+.|++.
T Consensus 59 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 59 LKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 45678999998765556667788888985 777888763
No 463
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=40.00 E-value=1.1e+02 Score=32.40 Aligned_cols=43 Identities=14% Similarity=0.060 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhhcc-CC-CCeeeccCCCchHHHHHHHHHhccc
Q 003502 125 YQKEWLAWALKQEESA-IR-GGILADEMGMGKTIQAIALVLAKRE 167 (815)
Q Consensus 125 yQ~~~~~~~~~~~~~~-~~-g~ILade~GlGKTi~ai~li~~~~~ 167 (815)
.|...+..+.....++ .. .-|+.-+.|.|||..|..++..+.-
T Consensus 10 ~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c 54 (329)
T PRK08058 10 LQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFC 54 (329)
T ss_pred hHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCC
Confidence 3444444444443321 22 3488899999999999888777653
No 464
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=39.88 E-value=48 Score=34.85 Aligned_cols=20 Identities=25% Similarity=0.174 Sum_probs=16.4
Q ss_pred CCCchHHHHHHHHHhccccc
Q 003502 150 MGMGKTIQAIALVLAKREIR 169 (815)
Q Consensus 150 ~GlGKTi~ai~li~~~~~~~ 169 (815)
=|+|||=.++.++..+...+
T Consensus 39 GGTGKTP~v~~La~~l~~~G 58 (311)
T TIGR00682 39 GGTGKTPVVVWLAELLKDRG 58 (311)
T ss_pred CCcChHHHHHHHHHHHHHCC
Confidence 49999999999988776543
No 465
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=39.86 E-value=28 Score=32.66 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=20.9
Q ss_pred eeeccCCCchHHHHHHHHHhccccc
Q 003502 145 ILADEMGMGKTIQAIALVLAKREIR 169 (815)
Q Consensus 145 ILade~GlGKTi~ai~li~~~~~~~ 169 (815)
|.+-++|.|||..+++++..+.+.+
T Consensus 2 I~~t~~~~GKT~va~~L~~~l~~~g 26 (166)
T TIGR00347 2 VTGTDTGVGKTVASSALAAKLKKAG 26 (166)
T ss_pred eecCCCCccHHHHHHHHHHHHHHCC
Confidence 5567899999999999998887644
No 466
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=39.75 E-value=26 Score=36.04 Aligned_cols=35 Identities=23% Similarity=0.156 Sum_probs=26.6
Q ss_pred HHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhc
Q 003502 131 AWALKQEESAIRGGILADEMGMGKTIQAIALVLAK 165 (815)
Q Consensus 131 ~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~ 165 (815)
.+++..+-...+..+|+-+.|+|||..+-.++...
T Consensus 23 ~~ll~~l~~~~~pvLl~G~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 23 SYLLDLLLSNGRPVLLVGPSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp HHHHHHHHHCTEEEEEESSTTSSHHHHHHHHHHCS
T ss_pred HHHHHHHHHcCCcEEEECCCCCchhHHHHhhhccC
Confidence 45555555556789999999999999887776543
No 467
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.53 E-value=9.7 Score=39.63 Aligned_cols=46 Identities=30% Similarity=0.759 Sum_probs=33.8
Q ss_pred hhhhhhcCcccccCCCCccccCCchhhhhhHhhhccccCCCCCCCCCCCcc
Q 003502 555 EHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 605 (815)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~ 605 (815)
......|-+|.+...+....+|||.-| |..-+ ..-..||.|+..+.
T Consensus 302 ~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs---~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 302 LPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCS---KHLPQCPVCRQRIR 347 (355)
T ss_pred cCCCCceEEecCCccceeeecCCcEEE--chHHH---hhCCCCchhHHHHH
Confidence 344567999999999999999999866 54332 23444999987654
No 468
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=39.23 E-value=40 Score=35.83 Aligned_cols=46 Identities=22% Similarity=0.137 Sum_probs=32.2
Q ss_pred ccchHHHHHHHHHHHHHhhccCCC-CeeeccCCCchHHHHHHHHHhc
Q 003502 120 TPLLRYQKEWLAWALKQEESAIRG-GILADEMGMGKTIQAIALVLAK 165 (815)
Q Consensus 120 ~~L~~yQ~~~~~~~~~~~~~~~~g-~ILade~GlGKTi~ai~li~~~ 165 (815)
...|.+|...+.-++......... .+|--..|+|||...-.++...
T Consensus 8 v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~ 54 (438)
T KOG2543|consen 8 VPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL 54 (438)
T ss_pred ccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc
Confidence 447899988887766553332222 2566688999999988877765
No 469
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=39.14 E-value=2.7e+02 Score=31.25 Aligned_cols=20 Identities=35% Similarity=0.433 Sum_probs=15.9
Q ss_pred CCCeeeccCCCchHHHHHHH
Q 003502 142 RGGILADEMGMGKTIQAIAL 161 (815)
Q Consensus 142 ~g~ILade~GlGKTi~ai~l 161 (815)
...++.-|.|+|||..|-++
T Consensus 162 ~~vli~Ge~GtGK~~lA~~i 181 (469)
T PRK10923 162 ISVLINGESGTGKELVAHAL 181 (469)
T ss_pred CeEEEEeCCCCcHHHHHHHH
Confidence 46788899999999876443
No 470
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=39.11 E-value=28 Score=32.76 Aligned_cols=51 Identities=8% Similarity=0.091 Sum_probs=33.0
Q ss_pred eeeEEEeecceeccCCCchHHHHHHhhhcCcEEEeeCCCCCCchhhHHHHHHHhc
Q 003502 335 KWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQ 389 (815)
Q Consensus 335 ~~~~vIvDEaH~~kn~~s~~~~~~~~l~~~~r~~LTgTPi~n~~~el~~ll~~L~ 389 (815)
.+|+||+|=...+.+ ....+..+.....+++..+|-..++.+...++.++.
T Consensus 67 ~yD~VIiD~pp~~~~----~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~ 117 (169)
T cd02037 67 ELDYLVIDMPPGTGD----EHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFK 117 (169)
T ss_pred CCCEEEEeCCCCCcH----HHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHH
Confidence 588999998876521 111122223445566666887778888888887775
No 471
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=39.11 E-value=42 Score=28.16 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=30.9
Q ss_pred CCceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCC
Q 003502 661 GSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMS 697 (815)
Q Consensus 661 ~~~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~ 697 (815)
++.++||+|..-.........|...|+.+..+.|++.
T Consensus 60 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 96 (100)
T cd01523 60 DDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMK 96 (100)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHH
Confidence 4578999999877778888899999999777888874
No 472
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=38.90 E-value=67 Score=33.21 Aligned_cols=27 Identities=26% Similarity=0.112 Sum_probs=19.4
Q ss_pred eeEEEeecceeccCCCchHHHHHHhhh
Q 003502 336 WERIILDEAHFIKDRRSNTAKAVLALE 362 (815)
Q Consensus 336 ~~~vIvDEaH~~kn~~s~~~~~~~~l~ 362 (815)
.-.||+||+-.-....+.+++....++
T Consensus 197 PiaIImDECMe~Lg~~~~is~fFHAlP 223 (369)
T PF02456_consen 197 PIAIIMDECMEKLGSHKSISKFFHALP 223 (369)
T ss_pred CEEEEhHHHHHHhcCCCChhHHHhcCc
Confidence 456999999876666666677776663
No 473
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=38.84 E-value=36 Score=35.93 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=36.8
Q ss_pred cccchHHHHHHHHHHHHHhhcc--CCCCeeeccCCCchHHHHHHHHHhccc
Q 003502 119 ITPLLRYQKEWLAWALKQEESA--IRGGILADEMGMGKTIQAIALVLAKRE 167 (815)
Q Consensus 119 ~~~L~~yQ~~~~~~~~~~~~~~--~~g~ILade~GlGKTi~ai~li~~~~~ 167 (815)
...++|+|......+.....++ .+.-++.-..|+||+..|.+++..+.-
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC 52 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLA 52 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhC
Confidence 3568999988887766664432 234678899999999999988887764
No 474
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=38.82 E-value=1.8e+02 Score=30.59 Aligned_cols=26 Identities=27% Similarity=0.197 Sum_probs=21.7
Q ss_pred CCeeeccCCCchHHHHHHHHHhcccc
Q 003502 143 GGILADEMGMGKTIQAIALVLAKREI 168 (815)
Q Consensus 143 g~ILade~GlGKTi~ai~li~~~~~~ 168 (815)
.-|+.-+.|+|||..|.+++..+...
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~ 51 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCE 51 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCC
Confidence 37888899999999999988877643
No 475
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=38.61 E-value=58 Score=33.66 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=19.7
Q ss_pred CCCeeeccCCCchHHHHHHHHHhc
Q 003502 142 RGGILADEMGMGKTIQAIALVLAK 165 (815)
Q Consensus 142 ~g~ILade~GlGKTi~ai~li~~~ 165 (815)
.|++|--..|.|||++|=+++...
T Consensus 167 kg~ll~GppGtGKTlla~~Vaa~m 190 (388)
T KOG0651|consen 167 KGLLLYGPPGTGKTLLARAVAATM 190 (388)
T ss_pred ceeEEeCCCCCchhHHHHHHHHhc
Confidence 588999999999999996665544
No 476
>PHA00673 acetyltransferase domain containing protein
Probab=38.46 E-value=41 Score=31.12 Aligned_cols=44 Identities=23% Similarity=0.096 Sum_probs=33.9
Q ss_pred eeeEEEeecceeccCCCchHHHHHHhh---hcCcEEEeeCCCCCCch
Q 003502 335 KWERIILDEAHFIKDRRSNTAKAVLAL---ESSYKWALSGTPLQNRV 378 (815)
Q Consensus 335 ~~~~vIvDEaH~~kn~~s~~~~~~~~l---~~~~r~~LTgTPi~n~~ 378 (815)
..+.|.||+.|+=++-.+.....+... ..-++|-+||||-.|..
T Consensus 87 ~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv 133 (154)
T PHA00673 87 TTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLV 133 (154)
T ss_pred EEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccch
Confidence 578899999999877666665555543 45678999999998865
No 477
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=38.27 E-value=51 Score=36.36 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=19.1
Q ss_pred CeeeccCCCchHHHHHHHHHhcc
Q 003502 144 GILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 144 ~ILade~GlGKTi~ai~li~~~~ 166 (815)
.+++-..|+|||.++.-++..+.
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 56788999999999988877754
No 478
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=38.23 E-value=35 Score=33.33 Aligned_cols=21 Identities=38% Similarity=0.502 Sum_probs=17.5
Q ss_pred eeeccCCCchHHHHHHHHHhc
Q 003502 145 ILADEMGMGKTIQAIALVLAK 165 (815)
Q Consensus 145 ILade~GlGKTi~ai~li~~~ 165 (815)
+|+-.+|+|||-.||+++...
T Consensus 5 ~i~GpT~tGKt~~ai~lA~~~ 25 (233)
T PF01745_consen 5 LIVGPTGTGKTALAIALAQKT 25 (233)
T ss_dssp EEE-STTSSHHHHHHHHHHHH
T ss_pred EEECCCCCChhHHHHHHHHHh
Confidence 567799999999999988765
No 479
>PTZ00062 glutaredoxin; Provisional
Probab=38.23 E-value=2.1e+02 Score=27.92 Aligned_cols=67 Identities=16% Similarity=0.187 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhcCCCceEEEEccC------hhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCC-ceEEE
Q 003502 648 ALREEIRFMVERDGSAKGIVFSQF------TSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPD-CKIFL 718 (815)
Q Consensus 648 ~l~~~l~~~~~~~~~~KvIIFs~~------~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~-~~vlL 718 (815)
.+.+.|..++.. ++|+||+.. =.....+..+|+..|++|..++=....+-|+.+. ++..-+. ++|++
T Consensus 101 ~~~~~v~~li~~---~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~-~~sg~~TvPqVfI 174 (204)
T PTZ00062 101 DTVEKIERLIRN---HKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELK-VYSNWPTYPQLYV 174 (204)
T ss_pred HHHHHHHHHHhc---CCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHH-HHhCCCCCCeEEE
Confidence 355555555543 599999873 3467788899999999999887766655565544 4544323 45555
No 480
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=37.65 E-value=1.7e+02 Score=31.97 Aligned_cols=53 Identities=17% Similarity=0.325 Sum_probs=31.9
Q ss_pred eeeEEEeecceeccCCCchHHH---HHHhh-hcCcEEEeeC--CCCCC--chhhHHHHHHH
Q 003502 335 KWERIILDEAHFIKDRRSNTAK---AVLAL-ESSYKWALSG--TPLQN--RVGELYSLVRF 387 (815)
Q Consensus 335 ~~~~vIvDEaH~~kn~~s~~~~---~~~~l-~~~~r~~LTg--TPi~n--~~~el~~ll~~ 387 (815)
..++++||-.|.+.+.....-. .+..+ .....++||+ +|-.- -..+|.+-+.+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~ 235 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEW 235 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhc
Confidence 3578999999999876433333 33333 3444799998 66432 22355555443
No 481
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=37.60 E-value=77 Score=32.64 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=17.6
Q ss_pred eeeccCCCchHHHHHHHHHhccc
Q 003502 145 ILADEMGMGKTIQAIALVLAKRE 167 (815)
Q Consensus 145 ILade~GlGKTi~ai~li~~~~~ 167 (815)
++.-..|.|||-++..++..+..
T Consensus 76 ~l~G~~G~GKTTt~akLA~~l~~ 98 (272)
T TIGR00064 76 LFVGVNGVGKTTTIAKLANKLKK 98 (272)
T ss_pred EEECCCCCcHHHHHHHHHHHHHh
Confidence 34569999999999887776643
No 482
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=37.59 E-value=76 Score=34.95 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=17.3
Q ss_pred eeeccCCCchHHHHHHHHHhcc
Q 003502 145 ILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 145 ILade~GlGKTi~ai~li~~~~ 166 (815)
+++-..|+|||-++..++..+.
T Consensus 104 ~lvG~~GvGKTTtaaKLA~~l~ 125 (429)
T TIGR01425 104 MFVGLQGSGKTTTCTKLAYYYQ 125 (429)
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 4566899999999977777654
No 483
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=37.50 E-value=26 Score=36.16 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=15.4
Q ss_pred cCCCchHHHHHHHHHhcccc
Q 003502 149 EMGMGKTIQAIALVLAKREI 168 (815)
Q Consensus 149 e~GlGKTi~ai~li~~~~~~ 168 (815)
-=|.|||.+++.+...+...
T Consensus 9 KGGVGKTT~~~nLA~~La~~ 28 (274)
T PRK13235 9 KGGIGKSTTTQNTVAGLAEM 28 (274)
T ss_pred CCCccHHHHHHHHHHHHHHC
Confidence 45899999998877776543
No 484
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=37.42 E-value=1.2e+02 Score=32.77 Aligned_cols=46 Identities=13% Similarity=0.233 Sum_probs=33.5
Q ss_pred eeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHHHHHHHHHHHHh
Q 003502 145 ILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRF 210 (815)
Q Consensus 145 ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~ll~qW~~Ei~~~ 210 (815)
+++-|+|.||+-.-+-++..+.. .+++|.|+=---+.||.--..+.
T Consensus 97 LIgGdPGIGKSTLLLQva~~lA~--------------------~~~vLYVsGEES~~QiklRA~RL 142 (456)
T COG1066 97 LIGGDPGIGKSTLLLQVAARLAK--------------------RGKVLYVSGEESLQQIKLRADRL 142 (456)
T ss_pred EEccCCCCCHHHHHHHHHHHHHh--------------------cCcEEEEeCCcCHHHHHHHHHHh
Confidence 67899999998765554444432 24789998877788998777665
No 485
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=37.35 E-value=1.5e+02 Score=39.84 Aligned_cols=65 Identities=17% Similarity=0.040 Sum_probs=42.7
Q ss_pred ccchHHHHHHHHHHHHHhhccCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHH
Q 003502 120 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA 199 (815)
Q Consensus 120 ~~L~~yQ~~~~~~~~~~~~~~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~l 199 (815)
..|-+-|++++.-++..-. +-.||--..|+|||-++-+++......+ ..+++++|..-
T Consensus 428 ~~Ls~~Q~~Av~~il~s~~---~v~ii~G~aGTGKTt~l~~l~~~~~~~G-------------------~~V~~lAPTgr 485 (1960)
T TIGR02760 428 FALSPSNKDAVSTLFTSTK---RFIIINGFGGTGSTEIAQLLLHLASEQG-------------------YEIQIITAGSL 485 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCC---CeEEEEECCCCCHHHHHHHHHHHHHhcC-------------------CeEEEEeCCHH
Confidence 3578899999977655311 3456666789999988766555443221 47899999765
Q ss_pred H-HHHHHH
Q 003502 200 V-TQWVSE 206 (815)
Q Consensus 200 l-~qW~~E 206 (815)
. ....++
T Consensus 486 AA~~L~e~ 493 (1960)
T TIGR02760 486 SAQELRQK 493 (1960)
T ss_pred HHHHHHHH
Confidence 4 444444
No 486
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=37.15 E-value=49 Score=34.13 Aligned_cols=42 Identities=19% Similarity=0.068 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhhc-cCCCCeeeccCCCchHHHHHHHHHhcc
Q 003502 125 YQKEWLAWALKQEES-AIRGGILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 125 yQ~~~~~~~~~~~~~-~~~g~ILade~GlGKTi~ai~li~~~~ 166 (815)
+|...++-+.....+ ....-++--++|+|||-++.++...+.
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~ 82 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALN 82 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhc
Confidence 677667666655544 234557778999999999999988765
No 487
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=37.04 E-value=29 Score=30.64 Aligned_cols=49 Identities=20% Similarity=0.620 Sum_probs=37.8
Q ss_pred hhhhcCcccccCCCCccc----cCCchhhhhhHhh-hccccCCCCCCCCCCCcc
Q 003502 557 VQQVCGLCNDLADDPVVT----NCGHAFCKACLFD-SSASKFVAKCPTCSIPLT 605 (815)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~----~~~~~~c~~c~~~-~~~~~~~~~~~~~~~~~~ 605 (815)
...+|.+|.+...+...+ -||...|..|-+. |--....+.||.|...+.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFK 132 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFK 132 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccc
Confidence 346799999887666543 6899999999876 344557999999998875
No 488
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=36.93 E-value=43 Score=37.17 Aligned_cols=42 Identities=21% Similarity=0.259 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHHHHhhccCCCC-eeeccCCCchHHHHHHHHHhccc
Q 003502 122 LLRYQKEWLAWALKQEESAIRGG-ILADEMGMGKTIQAIALVLAKRE 167 (815)
Q Consensus 122 L~~yQ~~~~~~~~~~~~~~~~g~-ILade~GlGKTi~ai~li~~~~~ 167 (815)
+.++|...+..++.+ + +|- |+.-++|+|||.+..+++..+..
T Consensus 242 ~~~~~~~~~~~~~~~---p-~GliLvTGPTGSGKTTTLY~~L~~ln~ 284 (500)
T COG2804 242 MSPFQLARLLRLLNR---P-QGLILVTGPTGSGKTTTLYAALSELNT 284 (500)
T ss_pred CCHHHHHHHHHHHhC---C-CeEEEEeCCCCCCHHHHHHHHHHHhcC
Confidence 467777766655544 3 243 44789999999999888887653
No 489
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=36.89 E-value=72 Score=34.51 Aligned_cols=60 Identities=20% Similarity=0.146 Sum_probs=41.8
Q ss_pred chHHHHHHHHHHHHHhhc-cCCCCeeeccCCCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHHH
Q 003502 122 LLRYQKEWLAWALKQEES-AIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAV 200 (815)
Q Consensus 122 L~~yQ~~~~~~~~~~~~~-~~~g~ILade~GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~ll 200 (815)
|-+-|+.++..++..... ......|.-.-|+|||...=+++..+... .+.+++++|..+.
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~-------------------~~~~~~~a~tg~A 62 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSR-------------------GKKVLVTAPTGIA 62 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccc-------------------cceEEEecchHHH
Confidence 567799988887665543 22344667788999999886666655432 1488999997764
No 490
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=36.78 E-value=27 Score=35.83 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=14.7
Q ss_pred cCCCchHHHHHHHHHhccc
Q 003502 149 EMGMGKTIQAIALVLAKRE 167 (815)
Q Consensus 149 e~GlGKTi~ai~li~~~~~ 167 (815)
-=|.|||.+++.++..+..
T Consensus 8 KGGVGKTT~~~nLA~~La~ 26 (268)
T TIGR01281 8 KGGIGKSTTSSNLSVAFAK 26 (268)
T ss_pred CCcCcHHHHHHHHHHHHHh
Confidence 4499999999887776654
No 491
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=36.48 E-value=47 Score=36.04 Aligned_cols=69 Identities=19% Similarity=0.329 Sum_probs=0.0
Q ss_pred CCchHHHHHHHHHhccccccccCCCCCCCCCCCCccCCccEEEEcChHHHHHHHHHHHHhcCCCCcEEEEEeCCCCcCCc
Q 003502 151 GMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSA 230 (815)
Q Consensus 151 GlGKTi~ai~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~~ll~qW~~Ei~~~~~~~~~~v~~~~g~~~~~~~ 230 (815)
|+|||-++.=++.++.. .+. .+|+||--.-.+--.+.++.... ...|-+|.. ....++
T Consensus 110 GsGKTTt~~KLA~~lkk-~~~------------------kvllVaaD~~RpAA~eQL~~La~--q~~v~~f~~-~~~~~P 167 (451)
T COG0541 110 GSGKTTTAGKLAKYLKK-KGK------------------KVLLVAADTYRPAAIEQLKQLAE--QVGVPFFGS-GTEKDP 167 (451)
T ss_pred CCChHhHHHHHHHHHHH-cCC------------------ceEEEecccCChHHHHHHHHHHH--HcCCceecC-CCCCCH
Q ss_pred ccc----------cCCCEEEe
Q 003502 231 KQF----------SEFDFVIT 241 (815)
Q Consensus 231 ~~~----------~~~~vvi~ 241 (815)
-.+ ..+||||+
T Consensus 168 v~Iak~al~~ak~~~~DvvIv 188 (451)
T COG0541 168 VEIAKAALEKAKEEGYDVVIV 188 (451)
T ss_pred HHHHHHHHHHHHHcCCCEEEE
No 492
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=36.48 E-value=82 Score=25.76 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=31.7
Q ss_pred cCCCceEEEEccChhHHHHHHHHHHhCCCc-EEEEecCCC
Q 003502 659 RDGSAKGIVFSQFTSFLDLINYSLHKSGVN-CVQLVGSMS 697 (815)
Q Consensus 659 ~~~~~KvIIFs~~~~~~~~l~~~L~~~g~~-~~~i~G~~~ 697 (815)
..++.++||||........+...|...|++ +..+.|++.
T Consensus 53 ~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~ 92 (100)
T smart00450 53 LDKDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYK 92 (100)
T ss_pred CCCCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHH
Confidence 345679999998777788888999999988 777888873
No 493
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=36.43 E-value=23 Score=37.40 Aligned_cols=33 Identities=24% Similarity=0.776 Sum_probs=29.0
Q ss_pred hhhcCcccccCCCCccccCCchhhhhhHhhhcc
Q 003502 558 QQVCGLCNDLADDPVVTNCGHAFCKACLFDSSA 590 (815)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~ 590 (815)
...|.+|....++|+++.|+|..|..|.....-
T Consensus 4 elkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 4 ELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 346999999999999999999999999976543
No 494
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=36.40 E-value=3.4e+02 Score=26.08 Aligned_cols=78 Identities=17% Similarity=0.232 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEeCCCCCcchHHHHh
Q 003502 673 SFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQ 752 (815)
Q Consensus 673 ~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g~~GlNL~~a~~vI~~d~~wnp~~~~Qai 752 (815)
+.+.-+....+++|+..+-+..-.+.++|-+++..-. +.+|.++| +.|..|..-. | .....|-+
T Consensus 135 EEa~~~Rne~~k~gislvpLvaPsTtdeRmell~~~a---dsFiYvVS-rmG~TG~~~s-----v-------n~~l~~L~ 198 (268)
T KOG4175|consen 135 EEAETLRNEARKHGISLVPLVAPSTTDERMELLVEAA---DSFIYVVS-RMGVTGTRES-----V-------NEKLQSLL 198 (268)
T ss_pred HHHHHHHHHHHhcCceEEEeeCCCChHHHHHHHHHhh---cceEEEEE-eccccccHHH-----H-------HHHHHHHH
Confidence 3444556666778888888888888889988887764 44666766 7777775322 1 13345566
Q ss_pred HhhhcCCCCCcEEE
Q 003502 753 DRIHRIGQYKPIRI 766 (815)
Q Consensus 753 gR~~R~GQ~~~V~v 766 (815)
-|+...-...++-|
T Consensus 199 qrvrk~t~dtPlAV 212 (268)
T KOG4175|consen 199 QRVRKATGDTPLAV 212 (268)
T ss_pred HHHHHhcCCCceeE
Confidence 66655544555544
No 495
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=36.36 E-value=52 Score=33.08 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=19.6
Q ss_pred CCeeeccCCCchHHHHHHHHHhcc
Q 003502 143 GGILADEMGMGKTIQAIALVLAKR 166 (815)
Q Consensus 143 g~ILade~GlGKTi~ai~li~~~~ 166 (815)
..+++-++|+|||..++-++....
T Consensus 23 ~~lI~G~pGsGKT~la~~~l~~~~ 46 (237)
T TIGR03877 23 VVLLSGGPGTGKSIFSQQFLWNGL 46 (237)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 347788999999999988877654
No 496
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.30 E-value=2.8e+02 Score=31.14 Aligned_cols=61 Identities=16% Similarity=0.233 Sum_probs=50.0
Q ss_pred ceEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 003502 663 AKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 724 (815)
Q Consensus 663 ~KvIIFs~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL~st~~g 724 (815)
..+||.+..+..+......|...|++...++|+.+..++..++.....+ .+.+++++....
T Consensus 52 ~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~-~~~il~~TPe~l 112 (470)
T TIGR00614 52 GITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDG-KIKLLYVTPEKC 112 (470)
T ss_pred CcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC-CCCEEEECHHHH
Confidence 4789999988887777778888999999999999988888888888655 788888776544
No 497
>PRK10037 cell division protein; Provisional
Probab=36.13 E-value=29 Score=35.26 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=16.3
Q ss_pred eccCCCchHHHHHHHHHhcccc
Q 003502 147 ADEMGMGKTIQAIALVLAKREI 168 (815)
Q Consensus 147 ade~GlGKTi~ai~li~~~~~~ 168 (815)
.--=|.|||.+++.+...+...
T Consensus 8 n~KGGvGKTT~a~nLA~~La~~ 29 (250)
T PRK10037 8 GVRGGVGTTSITAALAWSLQML 29 (250)
T ss_pred cCCCCccHHHHHHHHHHHHHhc
Confidence 3445999999998877766543
No 498
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=35.77 E-value=96 Score=25.99 Aligned_cols=37 Identities=14% Similarity=0.147 Sum_probs=29.7
Q ss_pred CCceEEEEccChhHHHHHHHHHHhCCCc-EEEEecCCC
Q 003502 661 GSAKGIVFSQFTSFLDLINYSLHKSGVN-CVQLVGSMS 697 (815)
Q Consensus 661 ~~~KvIIFs~~~~~~~~l~~~L~~~g~~-~~~i~G~~~ 697 (815)
.+.+++|||+.-.........|...|+. +..++|++.
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~ 94 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGID 94 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHH
Confidence 4578999999877777778888889985 677899874
No 499
>PRK13766 Hef nuclease; Provisional
Probab=35.69 E-value=5.2e+02 Score=31.24 Aligned_cols=114 Identities=10% Similarity=-0.002 Sum_probs=64.4
Q ss_pred CcchHHHHHHHHHHHHHhcCCCceEEEEccChhHHHHHHHHHHhC-C---CcEEEEecCCCHHHHHHHHHhhcCCCCceE
Q 003502 641 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS-G---VNCVQLVGSMSIPARDAAINRFTEDPDCKI 716 (815)
Q Consensus 641 ~~s~Kl~~l~~~l~~~~~~~~~~KvIIFs~~~~~~~~l~~~L~~~-g---~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v 716 (815)
.+++|-....-.+...+ ..++.++||.+.....+......+... + .++..++|.++..+|.++.. +..|
T Consensus 38 tG~GKT~~a~~~i~~~l-~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~------~~~i 110 (773)
T PRK13766 38 TGLGKTAIALLVIAERL-HKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWE------KAKV 110 (773)
T ss_pred CCccHHHHHHHHHHHHH-HhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHh------CCCE
Confidence 44666654333333333 234579999999877665555555442 3 37888999998888765543 2356
Q ss_pred EEEecCCCc-----ccccccccCEEEEeCCCCCcch-HHHHhHhhhcCCCC
Q 003502 717 FLMSLKAGG-----VALNLTVASHVFLMDPWWNPAV-EQQAQDRIHRIGQY 761 (815)
Q Consensus 717 lL~st~~g~-----~GlNL~~a~~vI~~d~~wnp~~-~~QaigR~~R~GQ~ 761 (815)
++++..... .-+++...+.||+=+.+--... -.-.+.+.++....
T Consensus 111 iv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~ 161 (773)
T PRK13766 111 IVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAK 161 (773)
T ss_pred EEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCC
Confidence 666654332 2345566677776665532111 11234455554443
No 500
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=35.64 E-value=84 Score=28.77 Aligned_cols=31 Identities=10% Similarity=0.286 Sum_probs=22.6
Q ss_pred EEEEcChHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 003502 191 TLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGS 224 (815)
Q Consensus 191 ~LIV~P~~ll~qW~~Ei~~~~~~~~~~v~~~~g~ 224 (815)
++|+| ++|..+..+-|+.-.| .+.++..+|+
T Consensus 70 ~vi~C-SALKr~YRD~LR~~~~--~~~Fv~L~g~ 100 (161)
T COG3265 70 VVIAC-SALKRSYRDLLREANP--GLRFVYLDGD 100 (161)
T ss_pred eEEec-HHHHHHHHHHHhccCC--CeEEEEecCC
Confidence 45555 4677889999988877 5777777775
Done!