Query 003502
Match_columns 815
No_of_seqs 291 out of 2040
Neff 9.2
Searched_HMMs 29240
Date Tue Mar 26 17:27:52 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003502.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1553-1557//hhsearch_pdb/003502hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 1.0 1 1 644.9 35.3 477 118-813 233-730 (800)
2 1z3i_X Similar to RAD54-like; 1.0 1 1 637.4 38.9 503 112-814 46-569 (644)
3 1z63_A Helicase of the SNF2/RA 1.0 1 1 587.2 36.6 463 115-814 31-494 (500)
4 3dmq_A RNA polymerase-associat 1.0 1 1 442.1 28.5 469 117-802 149-644 (968)
5 1wp9_A ATP-dependent RNA helic 1.0 1 1 377.3 32.6 448 120-791 8-493 (494)
6 4a2w_A RIG-I, retinoic acid in 1.0 1 1 344.3 31.0 473 119-794 246-769 (936)
7 2fwr_A DNA repair protein RAD2 1.0 1 1 339.8 16.9 377 119-789 91-470 (472)
8 4a2q_A RIG-I, retinoic acid in 1.0 1 1 338.4 32.1 472 119-794 246-769 (797)
9 1z5z_A Helicase of the SNF2/RA 1.0 1 1 332.7 22.1 256 456-814 9-265 (271)
10 4a2p_A RIG-I, retinoic acid in 1.0 1 1 328.2 28.9 498 120-810 6-540 (556)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=644.90 Aligned_cols=477 Identities=25% Similarity=0.424 Sum_probs=382.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCH
Q ss_conf 33443689999999999985413789701136789448999999983101236568777898987786677628998485
Q 003502 118 LITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV 197 (815)
Q Consensus 118 ~~~~L~pyQ~~~~~~l~~~~~~~~~ggILademGlGKT~~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~ 197 (815)
....|+|||++|+.||+.....+ +||||||+||+|||+|+|+++..+..... ..+|+|||||.
T Consensus 233 ~~~~Lr~yQ~egv~~l~~~~~~~-~~~ILademGlGKT~~ai~~i~~l~~~~~----------------~~~~~LIV~P~ 295 (800)
T 3mwy_W 233 KGGELRDFQLTGINWMAFLWSKG-DNGILADEMGLGKTVQTVAFISWLIFARR----------------QNGPHIIVVPL 295 (800)
T ss_dssp CSSCCCTHHHHHHHHHHHHHTTT-CCEEECCCTTSSTTHHHHHHHHHHHHHHS----------------CCSCEEEECCT
T ss_pred CCCCCCHHHHHHHHHHHHHHHCC-CCEEEEECCCCCHHHHHHHHHHHHHHHCC----------------CCCCEEEEECC
T ss_conf 79975899999999999985138-99899827875329999999999998607----------------79988999880
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC--------------CCCCCCCEEEECHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 789999999987218998079999489875780--------------000587799944034599763105998532233
Q 003502 198 AAVTQWVSEINRFTSVGSTKVLIYHGSNRERSA--------------KQFSEFDFVITTYSIIEADYRKHVMPPKQKCQY 263 (815)
Q Consensus 198 ~ll~qW~~Ei~~~~~~~~~~v~~~~g~~~~~~~--------------~~~~~~~ivi~ty~~l~~~~~~~~~~~~~~~~~ 263 (815)
+++.||.+||.+|+| .+.+++++|....+.. .....++|+|+||+++..+...
T Consensus 296 sll~qW~~E~~~~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~----------- 362 (800)
T 3mwy_W 296 STMPAWLDTFEKWAP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE----------- 362 (800)
T ss_dssp TTHHHHHHHHHHHST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH-----------
T ss_pred HHHHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHHHH-----------
T ss_conf 389999999999779--9649998277777889888776226300134456678899069999864999-----------
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEC
Q ss_conf 68532013466553201598502444644898852014434689998889877889877899999997431122899523
Q 003502 264 CGKSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDE 343 (815)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~vIiDE 343 (815)
+..+.|++||+||
T Consensus 363 -------------------------------------------------------------------l~~~~w~~vIvDE 375 (800)
T 3mwy_W 363 -------------------------------------------------------------------LGSIKWQFMAVDE 375 (800)
T ss_dssp -------------------------------------------------------------------HHTSEEEEEEETT
T ss_pred -------------------------------------------------------------------HHCCCCCEEEHHH
T ss_conf -------------------------------------------------------------------8337732564134
Q ss_pred CEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 22026898569999995114717885087887852347889987245878842234666544566788899999998402
Q 003502 344 AHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRH 423 (815)
Q Consensus 344 aH~ikn~~s~~~~~~~~l~~~~rl~LTgTPi~n~~~el~~ll~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (815)
||++||+.++.++++..+.+++||+|||||++|++.|||++++||.|..+.....
T Consensus 376 aH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~------------------------- 430 (800)
T 3mwy_W 376 AHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQE------------------------- 430 (800)
T ss_dssp GGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC------------------------------
T ss_pred HHHHCCCHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHH-------------------------
T ss_conf 4441471019999999752243897227857799999999999858663674344-------------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 35676641252111588852257999999998667654323687665458997189885147998899999999999999
Q 003502 424 FCWWNRYVATPIQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQA 503 (815)
Q Consensus 424 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ll~~~~lrr~k~~v~~~l~lp~~~~~~~~~~l~~~~~~~y~~l~~~~~~ 503 (815)
|. + .............++.+++++++||++.++... +|++.+..+.+.|++.|+.+|..+......
T Consensus 431 ---~~--~-------~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~--LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~ 496 (800)
T 3mwy_W 431 ---ID--F-------ENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKS--LPSKTERILRVELSDVQTEYYKNILTKNYS 496 (800)
T ss_dssp ----------------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTT--SCCEEEEEEEECCCHHHHHHHHHHHHHCCC
T ss_pred ---HC--C-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf ---23--2-------223146899999999997577753208766431--688279999707999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 99999870534553689999999999871495520013332335877012334454207444557897214688421254
Q 003502 504 QFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKA 583 (815)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 583 (815)
.+... .......++..++.+|++|+||+++..............
T Consensus 497 ~l~~~-----~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~------------------------------- 540 (800)
T 3mwy_W 497 ALTAG-----AKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDG------------------------------- 540 (800)
T ss_dssp ---------------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----------------------------------
T ss_pred HHHHC-----CCCCHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHCCCC-------------------------------
T ss_conf 98610-----354544699999999987358654235578998861566-------------------------------
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 57311015478899999997423445678878888644336766510022100022474168999999999988408996
Q 003502 584 CLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSA 663 (815)
Q Consensus 584 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~~l~~~~~~~~~~ 663 (815)
... ...........|+|+..|.++|..+. ..++
T Consensus 541 -----------------------------------------~~~----~~~~~~~l~~~s~K~~~L~~lL~~~~--~~g~ 573 (800)
T 3mwy_W 541 -----------------------------------------KMT----RENVLRGLIMSSGKMVLLDQLLTRLK--KDGH 573 (800)
T ss_dssp ------------------------------------------CC----SHHHHHHHHHTCHHHHHHHHHHHHHT--TTTC
T ss_pred -----------------------------------------CCC----HHHHHHHHHHCCHHHHHHHHHHHHHH--HCCC
T ss_conf -----------------------------------------555----77888876642769999999999975--2798
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCC-CCCEEEEEECCCCCCCCCCCCCCEEEEECCC
Q ss_conf 099991572479999999984898099994389998999999830279-9936999845897411362235989996899
Q 003502 664 KGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTED-PDCKIFLMSLKAGGVALNLTVASHVFLMDPW 742 (815)
Q Consensus 664 KvLIFsq~~~~~~~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~-~~~~vll~st~~g~~GlNL~~a~~vI~~d~~ 742 (815)
|+||||+++.++++|+.+|...|+++.+++|+++..+|+.++++|+++ +...|||+||++||+||||+.|++||+||++
T Consensus 574 kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~ 653 (800)
T 3mwy_W 574 RVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSD 653 (800)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCC
T ss_pred EEEEEECHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCC
T ss_conf 18999635999999999998679978999699999999999999608999825999745445678776016368994687
Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCC------CCCCCCHHHHHHHH
Q ss_conf 990148898674441799874899999838959999999999998875110279810------01689999998511
Q 003502 743 WNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSAD------AFGKLTEADMRFLF 813 (815)
Q Consensus 743 wnp~~~~QaigR~~R~GQ~~~V~Vy~lv~~~TiEe~i~~~~~~K~~~~~~~~~~~~~------~~~~~~~~~~~~l~ 813 (815)
|||..+.||+||+||+||+++|+||+|++.||+||+|++++..|..+.+.+++++.. ....++.+++..||
T Consensus 654 wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~el~~ll 730 (800)
T 3mwy_W 654 WNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAIL 730 (800)
T ss_dssp SCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC----------------CCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 88116899999988558986379999861998999999999998889999970375665321123478999999999
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=637.40 Aligned_cols=503 Identities=25% Similarity=0.318 Sum_probs=395.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHH----CCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 789975334436899999999999854----1378970113678944899999998310123656877789898778667
Q 003502 112 AEDPPDLITPLLRYQKEWLAWALKQEE----SAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLG 187 (815)
Q Consensus 112 ~~~p~~~~~~L~pyQ~~~~~~l~~~~~----~~~~ggILademGlGKT~~aiali~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (815)
...+|.+...|+|||++|+.||+.... ...+||||||+||+|||+|+|+++..+...... ..+.
T Consensus 46 ~~~~p~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~------------~~p~ 113 (644)
T 1z3i_X 46 VVVDPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD------------CKPE 113 (644)
T ss_dssp EECCHHHHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTT------------SSCS
T ss_pred EEECHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC------------CCCC
T ss_conf 7518564003519999999999984233544588875961078742999999999999974866------------5677
Q ss_pred CCCEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCC----------CCCCCEEEECHHHHHHHHHHCCCCC
Q ss_conf 762899848578999999998721899807999948987578000----------0587799944034599763105998
Q 003502 188 IKATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQ----------FSEFDFVITTYSIIEADYRKHVMPP 257 (815)
Q Consensus 188 ~~~~LIV~P~~ll~qW~~Ei~~~~~~~~~~v~~~~g~~~~~~~~~----------~~~~~ivi~ty~~l~~~~~~~~~~~ 257 (815)
.+++|||||++++.||.+|+.+|++. ...++.+++..+...... ...++|+|+||+++....
T Consensus 114 ~~~~LiV~P~sll~qW~~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~------- 185 (644)
T 1z3i_X 114 IDKVIVVSPSSLVRNWYNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA------- 185 (644)
T ss_dssp CSCEEEEECHHHHHHHHHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT-------
T ss_pred CCCEEEEECHHHHHHHHHHHHHHCCC-CEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHH-------
T ss_conf 78579996589988799999997588-7259998089889999999999873377778757996389987657-------
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 53223368532013466553201598502444644898852014434689998889877889877899999997431122
Q 003502 258 KQKCQYCGKSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWE 337 (815)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~ 337 (815)
..+....|+
T Consensus 186 -----------------------------------------------------------------------~~l~~~~~~ 194 (644)
T 1z3i_X 186 -----------------------------------------------------------------------EVLHKGKVG 194 (644)
T ss_dssp -----------------------------------------------------------------------TTTTTSCCC
T ss_pred -----------------------------------------------------------------------HHHHCCCCC
T ss_conf -----------------------------------------------------------------------875048865
Q ss_pred EEEEECCEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89952322026898569999995114717885087887852347889987245878842234666544566788899999
Q 003502 338 RIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCP 417 (815)
Q Consensus 338 ~vIiDEaH~ikn~~s~~~~~~~~l~~~~rl~LTgTPi~n~~~el~~ll~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (815)
+||+||||++||+.++.++++..+.+++||+|||||++|++.|||++++|+.|.+++.
T Consensus 195 ~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~---------------------- 252 (644)
T 1z3i_X 195 LVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGT---------------------- 252 (644)
T ss_dssp EEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCC----------------------
T ss_pred EEEEECCEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCC----------------------
T ss_conf 7998786224780459999998555673799846734588999999998618876899----------------------
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCHH------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCHHHH
Q ss_conf 9984023567664125211158885225------7999999998667654323687665458997189885147998899
Q 003502 418 HNSVRHFCWWNRYVATPIQTHGNSYGGR------RAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREA 491 (815)
Q Consensus 418 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~ll~~~~lrr~k~~v~~~l~lp~~~~~~~~~~l~~~~~ 491 (815)
...|...|..|+..+....... ......++.++.++++||++.++..+ +|++.+.++.+.+++.|+
T Consensus 253 ------~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~--LP~k~~~~v~~~ls~~q~ 324 (644)
T 1z3i_X 253 ------AQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKY--LPVKIEQVVCCNLTPLQK 324 (644)
T ss_dssp ------HHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGT--SCCEEEEEEEECCCHHHH
T ss_pred ------HHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCEEEEEEECCCHHHH
T ss_conf ------999998632615416776778889999999999999998899987108767642--798369999837998999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99999999999999999870534553689999999999871495520013332335877012334454207444557897
Q 003502 492 DYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDP 571 (815)
Q Consensus 492 ~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (815)
.+|..+....... ............+..++.||++|+||.++.........+. ..+.+
T Consensus 325 ~lY~~~~~~~~~~-----~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~------------~~~~~----- 382 (644)
T 1z3i_X 325 ELYKLFLKQAKPV-----ESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGF------------DGALD----- 382 (644)
T ss_dssp HHHHHHHHHHCGG-----GSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTC------------TTGGG-----
T ss_pred HHHHHHHHHHHHH-----HHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHH------------HHHHH-----
T ss_conf 9999999989999-----9876276214599999999999579998888874154003------------55776-----
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 21468842125457311015478899999997423445678878888644336766510022100022474168999999
Q 003502 572 VVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALRE 651 (815)
Q Consensus 572 ~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ 651 (815)
..|.. .. ........|+|+..+..
T Consensus 383 ------------------------~~~~~-----------~~---------------------~~~~~~~~s~K~~~l~~ 406 (644)
T 1z3i_X 383 ------------------------LFPQN-----------YS---------------------TKAVEPQLSGKMLVLDY 406 (644)
T ss_dssp ------------------------TSCSS-----------CC---------------------SSSCCGGGSHHHHHHHH
T ss_pred ------------------------HCCCC-----------CC---------------------CCCCCCCCCHHHHHHHH
T ss_conf ------------------------45421-----------11---------------------00057011748999999
Q ss_pred HHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCC-CEEEEEECCCCCCCCCC
Q ss_conf 99998840899609999157247999999998489809999438999899999983027999-36999845897411362
Q 003502 652 EIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPD-CKIFLMSLKAGGVALNL 730 (815)
Q Consensus 652 ~l~~~~~~~~~~KvLIFsq~~~~~~~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~-~~vll~st~~g~~GlNL 730 (815)
++..+.. ..++|+||||+++.++++|+.+|...|+.+.+++|+++..+|+.++++|++++. ..+||+||++||+||||
T Consensus 407 ll~~~~~-~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl 485 (644)
T 1z3i_X 407 ILAMTRT-TTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNL 485 (644)
T ss_dssp HHHHHHH-HCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCC
T ss_pred HHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCC
T ss_conf 9999864-699879999805999999999999779978998399999999999999639999967999844556678465
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf 23598999689999014889867444179987489999983895999999999999887511027981001689999998
Q 003502 731 TVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFGKLTEADMR 810 (815)
Q Consensus 731 ~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~Vy~lv~~~TiEe~i~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~ 810 (815)
+.|++||+||++|||..+.||+||+||+||+++|+||+|++.||+||+|++++..|+.+++.+++++......++.+|++
T Consensus 486 ~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~~v~~~~~~~~~~~~~~~l~ 565 (644)
T 1z3i_X 486 IGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVERHFSLGELR 565 (644)
T ss_dssp TTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCSSSCCCSSCHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHH
T ss_conf 23898999799998137999988403228987269999887988999999999999999999856860543378999999
Q ss_pred HHHC
Q ss_conf 5113
Q 003502 811 FLFV 814 (815)
Q Consensus 811 ~l~~ 814 (815)
.||.
T Consensus 566 ~Lf~ 569 (644)
T 1z3i_X 566 ELFS 569 (644)
T ss_dssp HHTC
T ss_pred HHHC
T ss_conf 9867
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=1.00 E-value=1 Score=587.17 Aligned_cols=463 Identities=30% Similarity=0.503 Sum_probs=389.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 97533443689999999999985413789701136789448999999983101236568777898987786677628998
Q 003502 115 PPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVI 194 (815)
Q Consensus 115 p~~~~~~L~pyQ~~~~~~l~~~~~~~~~ggILademGlGKT~~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV 194 (815)
|+.+...|+|||.+++.|+......+ +|+||||+||+|||+++++++..+.... ..+++|||
T Consensus 31 p~~~~~~L~~~Q~~~v~~l~~~~~~~-~~~ilad~~GlGKT~~ai~~i~~~~~~~-----------------~~~~~LIv 92 (500)
T 1z63_A 31 PYNIKANLRPYQIKGFSWMRFMNKLG-FGICLADDMGLGKTLQTIAVFSDAKKEN-----------------ELTPSLVI 92 (500)
T ss_dssp CCSCSSCCCHHHHHHHHHHHHHHHTT-CCEEECCCTTSCHHHHHHHHHHHHHHTT-----------------CCSSEEEE
T ss_pred CHHHHCCCHHHHHHHHHHHHHHHHCC-CCEEEEECCCCCHHHHHHHHHHHHHHCC-----------------CCCCEEEE
T ss_conf 83320033699999999999974179-9889980899738999999999887558-----------------99978999
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 48578999999998721899807999948987578000058779994403459976310599853223368532013466
Q 003502 195 CPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLV 274 (815)
Q Consensus 195 ~P~~ll~qW~~Ei~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~ivi~ty~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (815)
||.+++.||.+|+.+|++ ..++.+++|.... .....++|+|+||+++.....
T Consensus 93 ~P~~l~~qw~~e~~~~~~--~~~v~~~~g~~~~---~~~~~~~ivi~t~~~l~~~~~----------------------- 144 (500)
T 1z63_A 93 CPLSVLKNWEEELSKFAP--HLRFAVFHEDRSK---IKLEDYDIILTTYAVLLRDTR----------------------- 144 (500)
T ss_dssp ECSTTHHHHHHHHHHHCT--TSCEEECSSSTTS---CCGGGSSEEEEEHHHHTTCHH-----------------------
T ss_pred CCHHHHHHHHHHHHHHCC--CCEEEEEECCCHH---CCCCCCCEEEEEHHHHHCCCH-----------------------
T ss_conf 038999999999999779--9559997267021---003577689963799726302-----------------------
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCEECCCCCCHH
Q ss_conf 55320159850244464489885201443468999888987788987789999999743112289952322026898569
Q 003502 275 VHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNT 354 (815)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~vIiDEaH~ikn~~s~~ 354 (815)
+....|++||+||||+++|..+..
T Consensus 145 --------------------------------------------------------l~~~~~~~vIvDEaH~~kn~~~~~ 168 (500)
T 1z63_A 145 --------------------------------------------------------LKEVEWKYIVIDEAQNIKNPQTKI 168 (500)
T ss_dssp --------------------------------------------------------HHTCCEEEEEEETGGGGSCTTSHH
T ss_pred --------------------------------------------------------HCCCCCCEEEEECCCCCCCHHHHH
T ss_conf --------------------------------------------------------117872879980841017876899
Q ss_pred HHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 99999511471788508788785234788998724587884223466654456678889999999840235676641252
Q 003502 355 AKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATP 434 (815)
Q Consensus 355 ~~~~~~l~~~~rl~LTgTPi~n~~~el~~ll~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (815)
++++..+.++++|+|||||++|++.|+|++++|+.|.+++. +..|...+..+
T Consensus 169 ~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~----------------------------~~~f~~~~~~~ 220 (500)
T 1z63_A 169 FKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGS----------------------------YSEFKSKFATP 220 (500)
T ss_dssp HHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCC----------------------------HHHHHTTTHHH
T ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCC----------------------------HHHHHHHHCCC
T ss_conf 99999600471899746777799999999999858775799----------------------------89999985251
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 11158885225799999999866765432368766545899718988514799889999999999999999999870534
Q 003502 435 IQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGTV 514 (815)
Q Consensus 435 i~~~~~~~~~~~~~~~~~~~ll~~~~lrr~k~~v~~~l~lp~~~~~~~~~~l~~~~~~~y~~l~~~~~~~~~~~~~~~~~ 514 (815)
+..+. ......+..++.++++||++.+......+|+.....+.+++++.++.+|..+.......+ .....
T Consensus 221 ~~~~~------~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~----~~~~~ 290 (500)
T 1z63_A 221 IKKGD------NMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNI----DSVTG 290 (500)
T ss_dssp HHTTC------HHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTT----TTCCT
T ss_pred CCCCC------HHHHHHHHHHHHHHEEEECCCCCCHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH----HHHHC
T ss_conf 11466------889999999976674550255424112299975899981899999999999999999999----86423
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 55368999999999987149552001333233587701233445420744455789721468842125457311015478
Q 003502 515 MNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFV 594 (815)
Q Consensus 515 ~~~~~~~~~~l~~lr~~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~ 594 (815)
......++..+..++++|+||.++....
T Consensus 291 ~~~~~~~~~~l~~lr~~~~~p~l~~~~~---------------------------------------------------- 318 (500)
T 1z63_A 291 IKRKGMILSTLLKLKQIVDHPALLKGGE---------------------------------------------------- 318 (500)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTHHHHCSC----------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHCCHHHHCCCC----------------------------------------------------
T ss_conf 2106799999999998817998843852----------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCHHH
Q ss_conf 89999999742344567887888864433676651002210002247416899999999998840899609999157247
Q 003502 595 AKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSF 674 (815)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~~l~~~~~~~~~~KvLIFsq~~~~ 674 (815)
.....++|+..+.++|..... .++|+|||++++.+
T Consensus 319 -------------------------------------------~~~~~s~K~~~l~~~l~~~~~--~~~k~lvF~~~~~~ 353 (500)
T 1z63_A 319 -------------------------------------------QSVRRSGKMIRTMEIIEEALD--EGDKIAIFTQFVDM 353 (500)
T ss_dssp -------------------------------------------CCSTTCHHHHHHHHHHHHHHT--TTCCEEEECSCHHH
T ss_pred -------------------------------------------CHHHCCHHHHHHHHHHHHHHC--CCCCEEEEEEHHHH
T ss_conf -------------------------------------------011115529999999999872--68868999721889
Q ss_pred HHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 99999999848-98099994389998999999830279993699984589741136223598999689999014889867
Q 003502 675 LDLINYSLHKS-GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQD 753 (815)
Q Consensus 675 ~~~L~~~L~~~-g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vll~st~~g~~GlNL~~a~~vI~~d~~wnp~~~~Qaig 753 (815)
++.|...|... |+.+..++|+++..+|++++++|+++++..++|+||+++++|+||+.|++||++|++|||..+.|++|
T Consensus 354 ~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~g 433 (500)
T 1z63_A 354 GKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATD 433 (500)
T ss_dssp HHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCCCCHHHHHHH
T ss_conf 99999999885388769997999999999999996089998779995333557774455888999589989545899999
Q ss_pred HHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 4441799874899999838959999999999998875110279810016899999985113
Q 003502 754 RIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFGKLTEADMRFLFV 814 (815)
Q Consensus 754 R~~R~GQ~~~V~Vy~lv~~~TiEe~i~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 814 (815)
|++|+||+++|+||+|++.+|+||+|++++..|..+++.++++++.....++.+|++.||.
T Consensus 434 R~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 494 (500)
T 1z63_A 434 RVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKVIE 494 (500)
T ss_dssp TTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSSSSSSGGGSTTGGGGSSCHHHHHHHHS
T ss_pred HHHHCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHC
T ss_conf 8887389870699997748989999999999999999998606850211599999999964
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=1.00 E-value=1 Score=442.07 Aligned_cols=469 Identities=19% Similarity=0.228 Sum_probs=316.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC
Q ss_conf 53344368999999999998541378970113678944899999998310123656877789898778667762899848
Q 003502 117 DLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP 196 (815)
Q Consensus 117 ~~~~~L~pyQ~~~~~~l~~~~~~~~~ggILademGlGKT~~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P 196 (815)
.....|+|||++++.|++... ..++||||+||+|||+++++++........ .+++|||||
T Consensus 149 ~~~~~LrpyQ~eav~~~l~~~---~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~-----------------~~rvLIVvP 208 (968)
T 3dmq_A 149 GQRTSLIPHQLNIAHDVGRRH---APRVLLADEVGLGKTIEAGMILHQQLLSGA-----------------AERVLIIVP 208 (968)
T ss_dssp CCSSCCCHHHHHHHHHHHHSS---SCEEEECCCTTSCHHHHHHHHHHHHHHTSS-----------------CCCEEEECC
T ss_pred CCCCCCCHHHHHHHHHHHHHC---CCCEEEECCCCCCHHHHHHHHHHHHHHHCC-----------------CCEEEEEEC
T ss_conf 789997099999999999705---898898789997599999999999998189-----------------982999957
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEECCCCC----CCCCCCCCCCEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 5789999999987218998079999489875----780000587799944034599763105998532233685320134
Q 003502 197 VAAVTQWVSEINRFTSVGSTKVLIYHGSNRE----RSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKK 272 (815)
Q Consensus 197 ~~ll~qW~~Ei~~~~~~~~~~v~~~~g~~~~----~~~~~~~~~~ivi~ty~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (815)
.+|+.||.+|+.++++ .++.+++|+... .....+..++|+|+||+++......
T Consensus 209 ~sLl~Qw~~E~~~~f~---l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~-------------------- 265 (968)
T 3dmq_A 209 ETLQHQWLVEMLRRFN---LRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQR-------------------- 265 (968)
T ss_dssp TTTHHHHHHHHHHHSC---CCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTT--------------------
T ss_pred HHHHHHHHHHHHHHHC---CCEEEECCCHHHHHHHHCCCCCCCCCEEEECHHHHHHCHHH--------------------
T ss_conf 8889999999999869---98799806205554320036445689899768998648788--------------------
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCEECCCCCC
Q ss_conf 66553201598502444644898852014434689998889877889877899999997431122899523220268985
Q 003502 273 LVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRS 352 (815)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~vIiDEaH~ikn~~s 352 (815)
...+....|++||+||||+++|..+
T Consensus 266 -------------------------------------------------------~~~l~~~~~dlVIvDEAH~~kn~~~ 290 (968)
T 3dmq_A 266 -------------------------------------------------------LEHLCEAEWDLLVVDEAHHLVWSED 290 (968)
T ss_dssp -------------------------------------------------------THHHHTSCCCEEEECCSSCCCCBTT
T ss_pred -------------------------------------------------------HHHHHHCCCCEEEEHHHHHHCCCCC
T ss_conf -------------------------------------------------------8876415877897444676258887
Q ss_pred H---HHHHHHHH--HCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC-------CCCCC--CCCCCCCCC
Q ss_conf 6---99999951--1471788508788785234788998724587884223466654-------45667--888999999
Q 003502 353 N---TAKAVLAL--ESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCK-------VLDYS--SAECPNCPH 418 (815)
Q Consensus 353 ~---~~~~~~~l--~~~~rl~LTgTPi~n~~~el~~ll~fl~~~~~~~~~~~~~~~~-------~~~~~--~~~~~~~~~ 418 (815)
. .++.+..+ .++++|+|||||++|++.|+|++++|+.+..+.++........ ..... ...+.....
T Consensus 291 ~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~ 370 (968)
T 3dmq_A 291 APSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDEL 370 (968)
T ss_dssp BCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGT
T ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 54299999999862578589997687669879999999825930118989999999857889999998742678998899
Q ss_pred CCCCHHHHHHHHHCCCCCCCCC--CCCHHHHHHHHHHHHH-----HHHHHHHCCCCCCCCCCCCCEEEEEEECCCCHHHH
Q ss_conf 9840235676641252111588--8522579999999986-----67654323687665458997189885147998899
Q 003502 419 NSVRHFCWWNRYVATPIQTHGN--SYGGRRAMILLKHKVL-----RSVILRRTKKGRAADLALPPRIVSLRRDSLDIREA 491 (815)
Q Consensus 419 ~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~ll-----~~~~lrr~k~~v~~~l~lp~~~~~~~~~~l~~~~~ 491 (815)
..+... +......++..... ..............++ ..+++|+++..+. ..|.+....+.+.+++...
T Consensus 371 ~~L~~~--l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~---~~p~r~~~~~~l~~~~~~~ 445 (968)
T 3dmq_A 371 NMLGEM--IGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVK---GFPKRELHTIKLPLPTQYQ 445 (968)
T ss_dssp TSSTTT--TCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCC---CCCCCCCCEEEECCCHHHH
T ss_pred HHHHHH--HCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC---CCCHHHEEEEECCCCHHHH
T ss_conf 999988--42033678875036222333799999999999861733265632265545---5671115752368999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99999999999999999870534553689999999999871495520013332335877012334454207444557897
Q 003502 492 DYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDP 571 (815)
Q Consensus 492 ~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (815)
..|...... ........ . ...+.+|......
T Consensus 446 ~~~~~~~~~---------~~~~~~~~--~--------~~~~l~pe~~~~~------------------------------ 476 (968)
T 3dmq_A 446 TAIKVSGIM---------GARKSAED--R--------ARDMLYPERIYQE------------------------------ 476 (968)
T ss_dssp HHHHHHHHT---------TCCSSGGG--G--------THHHHCSGGGTTT------------------------------
T ss_pred HHHHHHHHH---------HHHHHHHH--H--------HHHHCCHHHHHHH------------------------------
T ss_conf 999987543---------02126677--7--------7641085989987------------------------------
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 21468842125457311015478899999997423445678878888644336766510022100022474168999999
Q 003502 572 VVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALRE 651 (815)
Q Consensus 572 ~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ 651 (815)
+.......+..++|+..|.+
T Consensus 477 ------------------------------------------------------------l~~~~~~~~~~~~K~~~L~~ 496 (968)
T 3dmq_A 477 ------------------------------------------------------------FEGDNATWWNFDPRVEWLMG 496 (968)
T ss_dssp ------------------------------------------------------------TTSSSCCTTTTSHHHHHHHH
T ss_pred ------------------------------------------------------------HHHHHHCCCCCCHHHHHHHH
T ss_conf ------------------------------------------------------------64333135685679999999
Q ss_pred HHHHHHHCCCCCEEEEECCCHHHHHHHHHHHH-HCCCCEEEEECCCCHHHHHHHHHHHCCCC-CCEEEEEECCCCCCCCC
Q ss_conf 99998840899609999157247999999998-48980999943899989999998302799-93699984589741136
Q 003502 652 EIRFMVERDGSAKGIVFSQFTSFLDLINYSLH-KSGVNCVQLVGSMSIPARDAAINRFTEDP-DCKIFLMSLKAGGVALN 729 (815)
Q Consensus 652 ~l~~~~~~~~~~KvLIFsq~~~~~~~L~~~L~-~~g~~~~~i~G~~~~~~R~~~i~~F~~~~-~~~vll~st~~g~~GlN 729 (815)
++.. .++.|+||||+++.+++.|...|. ..|+++..++|+++..+|..++++|+++. .++|++ +|.++++|+|
T Consensus 497 ll~~----~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLv-aT~v~~~GlD 571 (968)
T 3dmq_A 497 YLTS----HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLL-CSEIGSEGRN 571 (968)
T ss_dssp HHHH----TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEE-CSCCTTCSSC
T ss_pred HHHH----CCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEE-ECCHHHCCCC
T ss_conf 9983----7999789996959999999999998749838998499999999999999747997630898-5334316888
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 2235989996899990148898674441799874899999838959999999999998875110279810016
Q 003502 730 LTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFG 802 (815)
Q Consensus 730 L~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~Vy~lv~~~TiEe~i~~~~~~K~~~~~~~~~~~~~~~~ 802 (815)
++.|++||+||++|||..+.|++||++|+||++.|.||+++..+|+|++|++.+..|..+++..+.+......
T Consensus 572 l~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~~~~~~~~i~~ 644 (968)
T 3dmq_A 572 FQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYD 644 (968)
T ss_dssp CTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSSSCCSSHHHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCEECCCCCHHHHHH
T ss_conf 5567679995699987899987011430799850899980577719999999998678763537997899999
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=377.30 Aligned_cols=448 Identities=16% Similarity=0.185 Sum_probs=284.5
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCH-H
Q ss_conf 443689999999999985413789701136789448999999983101236568777898987786677628998485-7
Q 003502 120 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-A 198 (815)
Q Consensus 120 ~~L~pyQ~~~~~~l~~~~~~~~~ggILademGlGKT~~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-~ 198 (815)
..|+|||.+++.|++.. ++|++++||+|||++++.++...... ..+++|||||. +
T Consensus 8 ~~l~~~Q~~~i~~~~~~------~~ll~~~tG~GKT~~~~~~~~~~~~~------------------~~~~~liv~P~~~ 63 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKET------NCLIVLPTGLGKTLIAMMIAEYRLTK------------------YGGKVLMLAPTKP 63 (494)
T ss_dssp HCCCHHHHHHHHHGGGS------CEEEECCTTSCHHHHHHHHHHHHHHH------------------SCSCEEEECSSHH
T ss_pred CCCCHHHHHHHHHHHHC------CEEEECCCCCCHHHHHHHHHHHHHHC------------------CCCEEEEEECCHH
T ss_conf 78639999999999619------98999189987899999999999864------------------7985999978889
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCCCC-CCCCCCCCEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 8999999998721899807999948987578-000058779994403459976310599853223368532013466553
Q 003502 199 AVTQWVSEINRFTSVGSTKVLIYHGSNRERS-AKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVVHL 277 (815)
Q Consensus 199 ll~qW~~Ei~~~~~~~~~~v~~~~g~~~~~~-~~~~~~~~ivi~ty~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (815)
|+.||.+++.+|+......+..++|...... ...+...+|+|+||+.+...+...
T Consensus 64 L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~------------------------ 119 (494)
T 1wp9_A 64 LVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAG------------------------ 119 (494)
T ss_dssp HHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTT------------------------
T ss_pred HHHHHHHHHHHHHCCCHHHEEEEECCCCHHHHHHHCCCCCEEEECHHHHHHHHHCC------------------------
T ss_conf 99999999998747561116876077533556653357989996399999998608------------------------
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCEECCCCCCHHH--
Q ss_conf 201598502444644898852014434689998889877889877899999997431122899523220268985699--
Q 003502 278 KYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNTA-- 355 (815)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~vIiDEaH~ikn~~s~~~-- 355 (815)
.+....|++||+||||++++..+...
T Consensus 120 ----------------------------------------------------~~~~~~~~~vIiDEaH~~~~~~~~~~~~ 147 (494)
T 1wp9_A 120 ----------------------------------------------------RISLEDVSLIVFDEAHRAVGNYAYVFIA 147 (494)
T ss_dssp ----------------------------------------------------SCCTTSCSEEEEETGGGCSTTCHHHHHH
T ss_pred ----------------------------------------------------CCCHHHCEEEEEECCCCCCCCCCHHHHH
T ss_conf ----------------------------------------------------7156541089997875668888199999
Q ss_pred HHHHH-HHCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 99995-11471788508788785234788998724587884223466654456678889999999840235676641252
Q 003502 356 KAVLA-LESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATP 434 (815)
Q Consensus 356 ~~~~~-l~~~~rl~LTgTPi~n~~~el~~ll~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (815)
..+.. ....++++|||||. ++..+++.++.++++.......... .. ...++...
T Consensus 148 ~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~------------------~~------~~~~~~~~ 202 (494)
T 1wp9_A 148 REYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENS------------------PD------VRPYVKGI 202 (494)
T ss_dssp HHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTS------------------TT------TGGGCCCC
T ss_pred HHHHHCCCCCEEEEEECCCC-CCCHHHHHHHHHCCHHEEECCCCCC------------------HH------HHHHCCCC
T ss_conf 99973288776999956998-8857899999850700050267875------------------87------88752787
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-
Q ss_conf 1115888522579999999986676543236876654589971898851479988999999999999999999987053-
Q 003502 435 IQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGT- 513 (815)
Q Consensus 435 i~~~~~~~~~~~~~~~~~~~ll~~~~lrr~k~~v~~~l~lp~~~~~~~~~~l~~~~~~~y~~l~~~~~~~~~~~~~~~~- 513 (815)
...... ...... ...+...+.+.+.++.+.........|.. ..++........ . .+......+.
T Consensus 203 ~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~---~----~~~~~~~~~~~ 267 (494)
T 1wp9_A 203 RFEWVR-VDLPEI-YKEVRKLLREMLRDALKPLAETGLLESSS------PDIPKKEVLRAG---Q----IINEEMAKGNH 267 (494)
T ss_dssp CEEEEE-ECCCHH-HHHHHHHHHHHHHHHHHHHHHHTSSSCCC------TTSCHHHHHHHH---H----HHHHHHTTTCC
T ss_pred CEEEEE-CCCCHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCC------CCCCHHHHHHHH---H----HHHHHHHCCCC
T ss_conf 426895-688588-99999989899999999999735565457------773355789999---9----99987533563
Q ss_pred CC----------------------CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 45----------------------53689999999999871495520013332335877012334454207444557897
Q 003502 514 VM----------------------NNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDP 571 (815)
Q Consensus 514 ~~----------------------~~~~~~~~~l~~lr~~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (815)
.. .+.......+..+...+.++..... ..
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----------------~~------------ 318 (494)
T 1wp9_A 268 DLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKAS-----------------KE------------ 318 (494)
T ss_dssp STTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHH-----------------HH------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHH-----------------HH------------
T ss_conf 1134799998888899999999852579999999999875223211455-----------------66------------
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH--HCCCCCCCHHHHHH
Q ss_conf 2146884212545731101547889999999742344567887888864433676651002210--00224741689999
Q 003502 572 VVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRI--QLDEFQSSTKIEAL 649 (815)
Q Consensus 572 ~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~K~~~l 649 (815)
.++..-+ ....... .......++|+..|
T Consensus 319 -------~~~~~~~-------------------------------------------~~~~~~~~~~~~~~~~~~k~~~l 348 (494)
T 1wp9_A 319 -------IFSDKRM-------------------------------------------KKAISLLVQAKEIGLDHPKMDKL 348 (494)
T ss_dssp -------HHTSHHH-------------------------------------------HHHHHHHHHHHHHTCSCHHHHHH
T ss_pred -------HHHHHHH-------------------------------------------HHHHHHHHHHHHCCCCCHHHHHH
T ss_conf -------6650788-------------------------------------------98999999887458998699999
Q ss_pred HHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEC--------CCCHHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf 999999884089960999915724799999999848980999943--------899989999998302799936999845
Q 003502 650 REEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVG--------SMSIPARDAAINRFTEDPDCKIFLMSL 721 (815)
Q Consensus 650 ~~~l~~~~~~~~~~KvLIFsq~~~~~~~L~~~L~~~g~~~~~i~G--------~~~~~~R~~~i~~F~~~~~~~vll~st 721 (815)
.++|.......++.|+|||++++.+++.+...|...|+++..++| +++..+|+.+++.|+++ ...|++ +|
T Consensus 349 ~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~-~~~vLv-~T 426 (494)
T 1wp9_A 349 KEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARG-EFNVLV-AT 426 (494)
T ss_dssp HHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHT-SCSEEE-EC
T ss_pred HHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCC-CCEEEE-EC
T ss_conf 9999998436899759999766899999999999759980799656654444458999999999998669-946999-88
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 8974113622359899968999901488986744417998748999998389599999999999988751
Q 003502 722 KAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFE 791 (815)
Q Consensus 722 ~~g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~Vy~lv~~~TiEe~i~~~~~~K~~~~~ 791 (815)
.++++|+||+.|++||++|++|||..+.|++||++|.|| +.+|+|++.+|+||+++.++..|..+++
T Consensus 427 ~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 427 SVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp GGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC-------
T ss_pred CCCCCCCCCHHCCEEEEECCCCCHHHHHHHHHHCCCCCC---CEEEEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf 841258871437989992898878999998752257788---4699999569878999998887898730
No 6
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=344.35 Aligned_cols=473 Identities=14% Similarity=0.122 Sum_probs=267.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC-H
Q ss_conf 344368999999999998541378970113678944899999998310123656877789898778667762899848-5
Q 003502 119 ITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-V 197 (815)
Q Consensus 119 ~~~L~pyQ~~~~~~l~~~~~~~~~ggILademGlGKT~~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P-~ 197 (815)
...|+|||.+++.+++.. +++|++++||+|||++++..+......... ...+++||||| .
T Consensus 246 ~~~~r~~Q~~ai~~il~g-----~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~--------------~~~~~vLvl~Pt~ 306 (936)
T 4a2w_A 246 TKKARSYQIELAQPAING-----KNALICAPTGSGKTFVSILICEHHFQNMPA--------------GRKAKVVFLATKV 306 (936)
T ss_dssp --CCCHHHHHHHHHHHTT-----CCEEEECCTTSCHHHHHHHHHHTTTTTCCS--------------SCCCCEEEECSSH
T ss_pred CCCCCHHHHHHHHHHHCC-----CCEEEEECCCCHHHHHHHHHHHHHHHHCCC--------------CCCCEEEEEECCH
T ss_conf 898779999999999809-----989999699845999999999999973655--------------6898599996989
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCCCCC--CCCCCCCCCEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 7899999999872189980799994898757--80000587799944034599763105998532233685320134665
Q 003502 198 AAVTQWVSEINRFTSVGSTKVLIYHGSNRER--SAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVV 275 (815)
Q Consensus 198 ~ll~qW~~Ei~~~~~~~~~~v~~~~g~~~~~--~~~~~~~~~ivi~ty~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (815)
.|+.||.+++.++++...+++..++|..... ........+|+|+|++++...+....
T Consensus 307 ~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~--------------------- 365 (936)
T 4a2w_A 307 PVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT--------------------- 365 (936)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSS---------------------
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECHHHHHHHHHCCC---------------------
T ss_conf 99999999999971216955999979963125789741699999944999999987176---------------------
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCEECCCCCCHHH
Q ss_conf 53201598502444644898852014434689998889877889877899999997431122899523220268985699
Q 003502 276 HLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNTA 355 (815)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~vIiDEaH~ikn~~s~~~ 355 (815)
......|++||+||||++.+..+ ..
T Consensus 366 ------------------------------------------------------~~~l~~~~liViDEaH~~~~~~~-~~ 390 (936)
T 4a2w_A 366 ------------------------------------------------------LTSLSIFTLMIFDECHNTTGNHP-YN 390 (936)
T ss_dssp ------------------------------------------------------CCCGGGCSEEEEETGGGCSTTCH-HH
T ss_pred ------------------------------------------------------CCCCCCCCEEEEECCCCCCCCCC-HH
T ss_conf ------------------------------------------------------45336787999987313599866-99
Q ss_pred HHHHHH-H--------CCCEEEEECCCCCCCHHHHHHHHHHH-------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999951-1--------47178850878878523478899872-------4587884223466654456678889999999
Q 003502 356 KAVLAL-E--------SSYKWALSGTPLQNRVGELYSLVRFL-------QITPYSYYFCKDCDCKVLDYSSAECPNCPHN 419 (815)
Q Consensus 356 ~~~~~l-~--------~~~rl~LTgTPi~n~~~el~~ll~fl-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (815)
..+..+ . ...+++|||||.+++..++...+..+ +......
T Consensus 391 ~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~------------------------ 446 (936)
T 4a2w_A 391 VLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAIST------------------------ 446 (936)
T ss_dssp HHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEEC------------------------
T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEC------------------------
T ss_conf 99999999863137886739986388554540208999999999998549715534------------------------
Q ss_pred CCCHHHHHHHHHCCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE---------------
Q ss_conf 840235676641252111588----8522579999999986676543236876654589971898---------------
Q 003502 420 SVRHFCWWNRYVATPIQTHGN----SYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVS--------------- 480 (815)
Q Consensus 420 ~~~~~~~~~~~~~~~i~~~~~----~~~~~~~~~~~~~~ll~~~~lrr~k~~v~~~l~lp~~~~~--------------- 480 (815)
...+......++..+...... ...........+...+..++-.... .......+....-
T Consensus 447 ~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~--~~~l~~~~~~~~g~~~y~~~l~~l~k~~ 524 (936)
T 4a2w_A 447 VRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAY--VDTLSQNSKKDFGTQNYEHWIVVTQRKC 524 (936)
T ss_dssp CCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC--------------CCSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 65448999875367762377336556757999999999999999998876--6555320223322577999999999988
Q ss_pred -EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf -8514799889999999999999999999870534553689999999999871495520013332335877012334454
Q 003502 481 -LRRDSLDIREADYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQ 559 (815)
Q Consensus 481 -~~~~~l~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~hp~l~~~~~~~~~~~~~~~~~~~~~~ 559 (815)
....+........+..+... ...+..+...-.. ............+...+..... .+....+......
T Consensus 525 ~~~~l~~~~~~~~~~~~l~~~-~~~l~~~~~al~i-~~~~~~~~~~~~l~~~~~~~~~---------~~~~~~e~~l~~~ 593 (936)
T 4a2w_A 525 RLLQLEDKEEESRICRALFIC-TEHLRKYNDALII-SEDARIIDALSYLTEFFTNVKN---------GPYTELEQHLTAK 593 (936)
T ss_dssp HHCCCSCHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHSCHHHHHHHHHHHHHHHHH---------TTCCHHHHHHHHH
T ss_pred HHHCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHH---------CCCCHHHHHHHHH
T ss_conf 774055321035799999999-9999998888750-0204288899999999998763---------2588789999998
Q ss_pred HCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf 20744455789721468842125457311015478899999997423445678878888644336766510022100022
Q 003502 560 VCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDE 639 (815)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (815)
|.. ....+.......
T Consensus 594 --------------------~~~---------------------------------------------~~~~l~~~~~~~ 608 (936)
T 4a2w_A 594 --------------------FQE---------------------------------------------KEPELIALSKDE 608 (936)
T ss_dssp --------------------HHH---------------------------------------------HHHHHHHHHTST
T ss_pred --------------------HHH---------------------------------------------HHHHHHHHHHCC
T ss_conf --------------------999---------------------------------------------999999764056
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHC------------CCCEEEEECCCCHHHHHHHHHH
Q ss_conf 4741689999999999884089960999915724799999999848------------9809999438999899999983
Q 003502 640 FQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS------------GVNCVQLVGSMSIPARDAAINR 707 (815)
Q Consensus 640 ~~~s~K~~~l~~~l~~~~~~~~~~KvLIFsq~~~~~~~L~~~L~~~------------g~~~~~i~G~~~~~~R~~~i~~ 707 (815)
...++|+..|.++|...+...++.|+||||+++.+++.|..+|... |..+..++|+++..+|..++++
T Consensus 609 ~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~ 688 (936)
T 4a2w_A 609 TNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDA 688 (936)
T ss_dssp TCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-----------------------
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHH
T ss_conf 77897999999999998535899749999697999999999986373536666169965787656788899999999998
Q ss_pred HCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 02799936999845897411362235989996899990148898674441799874899999838959999999999998
Q 003502 708 FTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKK 787 (815)
Q Consensus 708 F~~~~~~~vll~st~~g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~Vy~lv~~~TiEe~i~~~~~~K~ 787 (815)
|++++.++||+ +|+++++|||++.|++||+||++||+..+.|++|| ||.+++.+|.|++.+|+|++.+ ....|.
T Consensus 689 Fr~~g~~~VLV-aT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR----GR~~~g~vi~Li~~~t~ee~~~-~~~~ke 762 (936)
T 4a2w_A 689 FKTSKDNRLLI-ATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVENEK-CNRYKE 762 (936)
T ss_dssp -----CCSEEE-EECC------CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEESCHHHHHHHH-HHHHHH
T ss_pred HHCCCCEEEEE-EECCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCC----CCCCCCEEEEEEECCCHHHHHH-HHHHHH
T ss_conf 63159815999-80726427760558989993899988999996487----7888877999986988999999-988999
Q ss_pred HHHHHHC
Q ss_conf 8751102
Q 003502 788 LVFEGTV 794 (815)
Q Consensus 788 ~~~~~~~ 794 (815)
.++...+
T Consensus 763 ~~~~~~i 769 (936)
T 4a2w_A 763 EMMNKAV 769 (936)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
No 7
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=1.00 E-value=1 Score=339.77 Aligned_cols=377 Identities=17% Similarity=0.145 Sum_probs=259.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCH-
Q ss_conf 3443689999999999985413789701136789448999999983101236568777898987786677628998485-
Q 003502 119 ITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV- 197 (815)
Q Consensus 119 ~~~L~pyQ~~~~~~l~~~~~~~~~ggILademGlGKT~~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~- 197 (815)
...|+|||.+++.+++.. +++||+++||+|||++++.++.... +++|||||.
T Consensus 91 ~~~l~~~Q~~ai~~i~~~-----~~~ll~~~TGsGKT~~~l~~i~~~~----------------------~~~Lvl~P~~ 143 (472)
T 2fwr_A 91 EISLRDYQEKALERWLVD-----KRGCIVLPTGSGKTHVAMAAINELS----------------------TPTLIVVPTL 143 (472)
T ss_dssp CCCBCHHHHHHHHHHTTT-----TEEEEECCTTSCHHHHHHHHHHHHC----------------------SCEEEEESSH
T ss_pred CCCCCHHHHHHHHHHHHC-----CCEEEEECCCCCHHHHHHHHHHHCC----------------------CCEEEEECCH
T ss_conf 998688999999999965-----9879996999988999999999809----------------------9999998799
Q ss_pred HHHHHHHHHHHHHCCCCCCE-EEEEECCCCCCCCCCCCCCCEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 78999999998721899807-99994898757800005877999440345997631059985322336853201346655
Q 003502 198 AAVTQWVSEINRFTSVGSTK-VLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVVH 276 (815)
Q Consensus 198 ~ll~qW~~Ei~~~~~~~~~~-v~~~~g~~~~~~~~~~~~~~ivi~ty~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (815)
.|+.||.+++.+| ... +..++|.... ..+|+|+||+.+.......
T Consensus 144 ~L~~Q~~~~~~~~----~~~~v~~~~g~~~~-------~~~Ivv~T~~~l~~~~~~~----------------------- 189 (472)
T 2fwr_A 144 ALAEQWKERLGIF----GEEYVGEFSGRIKE-------LKPLTVSTYDSAYVNAEKL----------------------- 189 (472)
T ss_dssp HHHHHHHHHGGGG----CGGGEEEBSSSCBC-------CCSEEEEEHHHHHHTHHHH-----------------------
T ss_pred HHHHHHHHHHHHC----CCCCEEEECCCCCC-------CCCEEEEECHHHHHHHHHH-----------------------
T ss_conf 9999999999967----99636998787677-------6778999768999779973-----------------------
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCEECCCCCCHHHH
Q ss_conf 32015985024446448988520144346899988898778898778999999974311228995232202689856999
Q 003502 277 LKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNTAK 356 (815)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~vIiDEaH~ikn~~s~~~~ 356 (815)
...|++||+||+|++.++... .
T Consensus 190 --------------------------------------------------------~~~~~liIvDEaH~~~~~~~~--~ 211 (472)
T 2fwr_A 190 --------------------------------------------------------GNRFMLLIFDEVHHLPAESYV--Q 211 (472)
T ss_dssp --------------------------------------------------------TTTCSEEEEETGGGTTSTTTH--H
T ss_pred --------------------------------------------------------CCCCCEEEEECCCCCCCHHHH--H
T ss_conf --------------------------------------------------------687778999897578976899--9
Q ss_pred HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 99951147178850878878523478899872458788422346665445667888999999984023567664125211
Q 003502 357 AVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQ 436 (815)
Q Consensus 357 ~~~~l~~~~rl~LTgTPi~n~~~el~~ll~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 436 (815)
.+..+.+.++++|||||..+...+ ..+..+++
T Consensus 212 ~~~~~~~~~~l~lSATp~~~~~~~-~~l~~~~~----------------------------------------------- 243 (472)
T 2fwr_A 212 IAQMSIAPFRLGLTATFEREDGRH-EILKEVVG----------------------------------------------- 243 (472)
T ss_dssp HHHTCCCSEEEEEESCCCCTTSGG-GSHHHHTC-----------------------------------------------
T ss_pred HHHHCCCCEEEEEECCCCCCCCHH-HHHHHHHC-----------------------------------------------
T ss_conf 997357781899932766889778-99999729-----------------------------------------------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 15888522579999999986676543236876654589971898851479988999999999999999999987053455
Q 003502 437 THGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGTVMN 516 (815)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~ll~~~~lrr~k~~v~~~l~lp~~~~~~~~~~l~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~ 516 (815)
+.+.++...++ ....+++.....+.+.+++.+...|..+.......
T Consensus 244 ---------------------~~~~~~~~~~l-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 289 (472)
T 2fwr_A 244 ---------------------GKVFELFPDSL-AGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQF------------ 289 (472)
T ss_dssp ---------------------CEEEECCHHHH-TSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSC------------
T ss_pred ---------------------CEEEECCHHHH-HCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHH------------
T ss_conf ---------------------85765478987-06767881899998589989999999999999999------------
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 36899999999998714955200133323358770123344542074445578972146884212545731101547889
Q 003502 517 NYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAK 596 (815)
Q Consensus 517 ~~~~~~~~l~~lr~~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~ 596 (815)
.....+.... . ....... .. ...
T Consensus 290 ---------------l~~~~~~~~~-~-----------~~~~~~~------------~~------------------~~~ 312 (472)
T 2fwr_A 290 ---------------LRARGITLRR-A-----------EDFNKIV------------MA------------------SGY 312 (472)
T ss_dssp ---------------SSSCCCTTTC-C-----------SSSTTTT------------TT------------------TCC
T ss_pred ---------------HHHCCCCCCC-H-----------HHHHHHH------------HH------------------HCC
T ss_conf ---------------9864754224-4-----------6689999------------87------------------236
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHH
Q ss_conf 99999974234456788788886443367665100221000224741689999999999884089960999915724799
Q 003502 597 CPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLD 676 (815)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~~l~~~~~~~~~~KvLIFsq~~~~~~ 676 (815)
++.++. ...............+.|+..|.+++.. ..+.|+|||+++..+++
T Consensus 313 ~~~~~~-------------------------~~~~~~~~~~~~~~~~~k~~~l~~~l~~----~~~~k~lvF~~~~~~~~ 363 (472)
T 2fwr_A 313 DERAYE-------------------------ALRAWEEARRIAFNSKNKIRKLREILER----HRKDKIIIFTRHNELVY 363 (472)
T ss_dssp SSSSST-------------------------TTHHHHHHHHHHHSCSHHHHHHHHHHHH----TSSSCBCCBCSCHHHHH
T ss_pred CHHHHH-------------------------HHHHHHHHHHHHHCCHHHHHHHHHHHHH----CCCCCEEEEECCHHHHH
T ss_conf 988999-------------------------9999999999763373899999999985----78983899979799999
Q ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 99999984898099994389998999999830279993699984589741136223598999689999014889867444
Q 003502 677 LINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIH 756 (815)
Q Consensus 677 ~L~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vll~st~~g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~ 756 (815)
.+...|. +..++|+++..+|+.+++.|+++ .+.|++ +|+++++|+|++.+++||+++++||+..+.|++||++
T Consensus 364 ~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g-~~~vLv-~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~ 436 (472)
T 2fwr_A 364 RISKVFL-----IPAITHRTSREEREEILEGFRTG-RFRAIV-SSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRIL 436 (472)
T ss_dssp HHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHS-SCSBCB-CSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSB
T ss_pred HHHHHHC-----CCEEECCCCHHHHHHHHHHHHCC-CCCEEE-ECCCHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999748-----65562899999999999998679-988899-8570514846202868999899998889999876315
Q ss_pred CCCCC-CCEEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 17998-7489999983895999999999999887
Q 003502 757 RIGQY-KPIRIVRFLIENTIEERILKLQEKKKLV 789 (815)
Q Consensus 757 R~GQ~-~~V~Vy~lv~~~TiEe~i~~~~~~K~~~ 789 (815)
|.||. +.|.+|.|++.+|+||++.+++..|...
T Consensus 437 R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~~~~ 470 (472)
T 2fwr_A 437 RPSKGKKEAVLYELISRGTGEVNTARRRKNAAKG 470 (472)
T ss_dssp CCCTTTCCEEEEEEEECSCC--------------
T ss_pred CCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHCC
T ss_conf 7779985399999981998537999999876505
No 8
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=338.38 Aligned_cols=472 Identities=14% Similarity=0.130 Sum_probs=268.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC-H
Q ss_conf 344368999999999998541378970113678944899999998310123656877789898778667762899848-5
Q 003502 119 ITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-V 197 (815)
Q Consensus 119 ~~~L~pyQ~~~~~~l~~~~~~~~~ggILademGlGKT~~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P-~ 197 (815)
...|+|||.+++.+++.. +++|++++||+|||++++..+......... ...+++||||| .
T Consensus 246 ~~~l~~~Q~~~i~~~l~~-----~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--------------~~~~~~Lvl~Pt~ 306 (797)
T 4a2q_A 246 TKKARSYQIELAQPAING-----KNALICAPTGSGKTFVSILICEHHFQNMPA--------------GRKAKVVFLATKV 306 (797)
T ss_dssp --CCCHHHHHHHHHHHTT-----CCEEEECCTTSCHHHHHHHHHHHHHHTCCS--------------SCCCCEEEECSSH
T ss_pred CCCCCHHHHHHHHHHHHC-----CCEEEEECCCCHHHHHHHHHHHHHHHHCCC--------------CCCCEEEEEECCH
T ss_conf 899999999999999809-----998999699972999999999999984665--------------6799699996989
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC--CCCCCCCCEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 78999999998721899807999948987578--0000587799944034599763105998532233685320134665
Q 003502 198 AAVTQWVSEINRFTSVGSTKVLIYHGSNRERS--AKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVV 275 (815)
Q Consensus 198 ~ll~qW~~Ei~~~~~~~~~~v~~~~g~~~~~~--~~~~~~~~ivi~ty~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (815)
.|+.||.+++.++++...+++..++|...... .......+|+|+|++++...+....
T Consensus 307 ~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~--------------------- 365 (797)
T 4a2q_A 307 PVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT--------------------- 365 (797)
T ss_dssp HHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSS---------------------
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHCC---------------------
T ss_conf 99999999999861437946999969962324699740799999976699999998265---------------------
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEEEEEECCEECCCCCCHH
Q ss_conf 53201598502444644898852014434689998889877889877899999997-43112289952322026898569
Q 003502 276 HLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPL-HSLKWERIILDEAHFIKDRRSNT 354 (815)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~w~~vIiDEaH~ikn~~s~~ 354 (815)
+ ....|++||+||||++.+....
T Consensus 366 -------------------------------------------------------~~~~~~~~~iViDEaH~~~~~~~~- 389 (797)
T 4a2q_A 366 -------------------------------------------------------LTSLSIFTLMIFDECHNTTGNHPY- 389 (797)
T ss_dssp -------------------------------------------------------CCCGGGCSEEEETTGGGCSTTSHH-
T ss_pred -------------------------------------------------------CCCCCCCCEEEEECCCCCCCCCCH-
T ss_conf -------------------------------------------------------465133778999886355887649-
Q ss_pred HHHHHH-HH--------CCCEEEEECCCCCCCHHHHHHHHHHH-------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999995-11--------47178850878878523478899872-------458788422346665445667888999999
Q 003502 355 AKAVLA-LE--------SSYKWALSGTPLQNRVGELYSLVRFL-------QITPYSYYFCKDCDCKVLDYSSAECPNCPH 418 (815)
Q Consensus 355 ~~~~~~-l~--------~~~rl~LTgTPi~n~~~el~~ll~fl-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (815)
...+.. +. ...+++|||||.+++..++...+..+ +.......
T Consensus 390 ~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~---------------------- 447 (797)
T 4a2q_A 390 NVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTV---------------------- 447 (797)
T ss_dssp HHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECC----------------------
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECC----------------------
T ss_conf 9999999997631478878599972775545522489999999999985498488545----------------------
Q ss_pred CCCCHHHHHHHHHCCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE--------------
Q ss_conf 9840235676641252111588----8522579999999986676543236876654589971898--------------
Q 003502 419 NSVRHFCWWNRYVATPIQTHGN----SYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVS-------------- 480 (815)
Q Consensus 419 ~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~~~~~~~~ll~~~~lrr~k~~v~~~l~lp~~~~~-------------- 480 (815)
.........++..+...... ...........+...+..+.-.... +......+....-
T Consensus 448 --~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~--l~~l~~~~~~~~g~~~~~~~~~~~~~~ 523 (797)
T 4a2q_A 448 --RENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYS--VDTLSQNSKKDFGTQNYEHWIVVTQRK 523 (797)
T ss_dssp --CTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC--------------CCSSHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf --4317889973588854888457777867899999999999999999875--677653000011405677899999998
Q ss_pred --EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf --851479988999999999999999999987053455368999999999987149552001333233587701233445
Q 003502 481 --LRRDSLDIREADYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQ 558 (815)
Q Consensus 481 --~~~~~l~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~hp~l~~~~~~~~~~~~~~~~~~~~~ 558 (815)
.........+...+..+.. ....+..+...-.. .........+..++..+...... +....+.....
T Consensus 524 ~~~~~~~~~~~~~~~~~~l~~-~~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~---------~~~~~~~~l~~ 592 (797)
T 4a2q_A 524 CRLLQLEDKEEESRICRALFI-CTEHLRKYNDALII-SEDARIIDALSYLTEFFTNVKNG---------PYTELEQHLTA 592 (797)
T ss_dssp HHHCCCSSHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHSCHHHHHHHHHHHHHHHHHT---------TCCHHHHHHHH
T ss_pred HHHHCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHCC---------CCCHHHHHHHH
T ss_conf 777403432025679999999-99999999988765-41325888999999999987504---------76689999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf 42074445578972146884212545731101547889999999742344567887888864433676651002210002
Q 003502 559 QVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLD 638 (815)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (815)
... .....+......
T Consensus 593 ~~~-----------------------------------------------------------------~~~~~l~~~~~~ 607 (797)
T 4a2q_A 593 KFQ-----------------------------------------------------------------EKEPELIALSKD 607 (797)
T ss_dssp HHH-----------------------------------------------------------------TTHHHHHHHHHC
T ss_pred HHH-----------------------------------------------------------------HHHHHHHHHHCC
T ss_conf 999-----------------------------------------------------------------999999876307
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHC------------CCCEEEEECCCCHHHHHHHHH
Q ss_conf 24741689999999999884089960999915724799999999848------------980999943899989999998
Q 003502 639 EFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS------------GVNCVQLVGSMSIPARDAAIN 706 (815)
Q Consensus 639 ~~~~s~K~~~l~~~l~~~~~~~~~~KvLIFsq~~~~~~~L~~~L~~~------------g~~~~~i~G~~~~~~R~~~i~ 706 (815)
....++|+..|.++|...+...++.|+||||+++.+++.|...|... |..+..++|+++..+|..+++
T Consensus 608 ~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~ 687 (797)
T 4a2q_A 608 ETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLD 687 (797)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHH
T ss_conf 88899599999999999850589970899979589999999999747564665521898447754578989999999999
Q ss_pred HHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHH
Q ss_conf 30279993699984589741136223598999689999014889867444179987489999983895999999999999
Q 003502 707 RFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKK 786 (815)
Q Consensus 707 ~F~~~~~~~vll~st~~g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~Vy~lv~~~TiEe~i~~~~~~K 786 (815)
+|++++.++|++ +|+++++|||++.|++||+||++|||..+.|++|| ||.+++.+|.|++.++++++ +.....|
T Consensus 688 ~F~~~g~~~vLV-aT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR----GR~~~g~~i~l~~~~~~ee~-~~~~~~k 761 (797)
T 4a2q_A 688 AFKTSKDNRLLI-ATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYK 761 (797)
T ss_dssp ------CCSEEE-EECC-------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECCHHHHHH-HHHHHHH
T ss_pred HHHCCCCCEEEE-ECCCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCC----CCCCCCEEEEEEECCCHHHH-HHHHHHH
T ss_conf 851369704999-74805447975108989994899988999985388----87878659999728768899-9988899
Q ss_pred HHHHHHHC
Q ss_conf 88751102
Q 003502 787 KLVFEGTV 794 (815)
Q Consensus 787 ~~~~~~~~ 794 (815)
..++..++
T Consensus 762 e~~~~~~i 769 (797)
T 4a2q_A 762 EEMMNKAV 769 (797)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
No 9
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=1.00 E-value=1 Score=332.72 Aligned_cols=256 Identities=29% Similarity=0.427 Sum_probs=224.8
Q ss_pred HHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 66765432368766545899718988514799889999999999999999999870534553689999999999871495
Q 003502 456 LRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHP 535 (815)
Q Consensus 456 l~~~~lrr~k~~v~~~l~lp~~~~~~~~~~l~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~hp 535 (815)
-.+.-+||+|++|..+ ||++.+..++++|++.|+.+|+.+..+....+. ..........++..+++||++|+||
T Consensus 9 ~~~~~~rr~k~~v~~~--LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~----~~~~~~~~~~~l~~l~~Lrq~~~hP 82 (271)
T 1z5z_A 9 HHSSGLVPRGSHMASD--LPDKIETNVYCNLTPEQAAMYKAEVENLFNNID----SVTGIKRKGMILSTLLKLKQIVDHP 82 (271)
T ss_dssp ---------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTT----TCCHHHHHHHHHHHHHHHHHHTTCT
T ss_pred CCCCCCCCCHHHHHHH--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHH----HCCCCCHHHHHHHHHHHHHHHCCCH
T ss_conf 3455641648778751--999779999818999999999999999999997----4035212889999999999984899
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 52001333233587701233445420744455789721468842125457311015478899999997423445678878
Q 003502 536 YLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAG 615 (815)
Q Consensus 536 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (815)
.++....
T Consensus 83 ~l~~~~~------------------------------------------------------------------------- 89 (271)
T 1z5z_A 83 ALLKGGE------------------------------------------------------------------------- 89 (271)
T ss_dssp HHHHCSC-------------------------------------------------------------------------
T ss_pred HHHCCCC-------------------------------------------------------------------------
T ss_conf 8846873-------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHC-CCCEEEEEC
Q ss_conf 8886443367665100221000224741689999999999884089960999915724799999999848-980999943
Q 003502 616 NRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS-GVNCVQLVG 694 (815)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~~l~~~~~~~~~~KvLIFsq~~~~~~~L~~~L~~~-g~~~~~i~G 694 (815)
.....|+|+..|.++|..+.. .++|+||||+++.+++.|+..|... |+++..++|
T Consensus 90 ----------------------~~~~~s~K~~~L~~ll~~~~~--~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G 145 (271)
T 1z5z_A 90 ----------------------QSVRRSGKMIRTMEIIEEALD--EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYG 145 (271)
T ss_dssp ----------------------CCSTTCHHHHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECT
T ss_pred ----------------------CCCCCCHHHHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf ----------------------223468999999999999986--79969999551999999999998733984799979
Q ss_pred CCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCC
Q ss_conf 89998999999830279993699984589741136223598999689999014889867444179987489999983895
Q 003502 695 SMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENT 774 (815)
Q Consensus 695 ~~~~~~R~~~i~~F~~~~~~~vll~st~~g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~Vy~lv~~~T 774 (815)
+++..+|+.++++|++++++.|+|+||+++|+||||+.|++||+||+||||..+.||+||++|+||+++|+||+|++.+|
T Consensus 146 ~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~T 225 (271)
T 1z5z_A 146 ELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 225 (271)
T ss_dssp TSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTS
T ss_pred CCCHHHHHHHHHHHCCCCCCCEEEEEHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCC
T ss_conf 99999999999983289999789972235158867644899999799998518999998523238998569999854988
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 9999999999998875110279810016899999985113
Q 003502 775 IEERILKLQEKKKLVFEGTVGGSADAFGKLTEADMRFLFV 814 (815)
Q Consensus 775 iEe~i~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 814 (815)
+||+|++++..|..+++.++++++.....++.+|++.||.
T Consensus 226 iEe~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 265 (271)
T 1z5z_A 226 LEEKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKVIE 265 (271)
T ss_dssp HHHHHHHHHHHCHHHHTTGGGGTTHHHHTSCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHC
T ss_conf 9999999999999999999716705432389999999965
No 10
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=1.00 E-value=1 Score=328.18 Aligned_cols=498 Identities=12% Similarity=0.119 Sum_probs=268.8
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCH-H
Q ss_conf 443689999999999985413789701136789448999999983101236568777898987786677628998485-7
Q 003502 120 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-A 198 (815)
Q Consensus 120 ~~L~pyQ~~~~~~l~~~~~~~~~ggILademGlGKT~~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-~ 198 (815)
..|+|||.+++.+++.. +++|++++||+|||++++..+......... ...+++|||||. .
T Consensus 6 ~~~~~~Q~~~i~~~~~~-----~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~--------------~~~~~~lil~P~~~ 66 (556)
T 4a2p_A 6 KKARSYQIELAQPAING-----KNALICAPTGSGKTFVSILICEHHFQNMPA--------------GRKAKVVFLATKVP 66 (556)
T ss_dssp --CCHHHHHHHHHHHTT-----CCEEEECCTTSCHHHHHHHHHHHHHHTCCS--------------SCCCCEEEECSSHH
T ss_pred CCCCHHHHHHHHHHHCC-----CCEEEECCCCCHHHHHHHHHHHHHHHHCCC--------------CCCCEEEEEECCHH
T ss_conf 78779999999999749-----989998199971899999999999983745--------------67986999928899
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCCCC--CCCCCCCCEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 8999999998721899807999948987578--00005877999440345997631059985322336853201346655
Q 003502 199 AVTQWVSEINRFTSVGSTKVLIYHGSNRERS--AKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVVH 276 (815)
Q Consensus 199 ll~qW~~Ei~~~~~~~~~~v~~~~g~~~~~~--~~~~~~~~ivi~ty~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (815)
|+.||.+++.++++...+.+..++|...... .......+|+|+|++.+...+....
T Consensus 67 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~---------------------- 124 (556)
T 4a2p_A 67 VYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT---------------------- 124 (556)
T ss_dssp HHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSS----------------------
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCCCCEEEECHHHHHHHHHHCC----------------------
T ss_conf 9999999999872406945999828987422289861799999988999999998375----------------------
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEEEEEECCEECCCCCCHHH
Q ss_conf 3201598502444644898852014434689998889877889877899999997-431122899523220268985699
Q 003502 277 LKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPL-HSLKWERIILDEAHFIKDRRSNTA 355 (815)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~w~~vIiDEaH~ikn~~s~~~ 355 (815)
+ ....|++||+||||++.+......
T Consensus 125 ------------------------------------------------------~~~~~~~~~vViDEah~~~~~~~~~~ 150 (556)
T 4a2p_A 125 ------------------------------------------------------LTSLSIFTLMIFDECHNTTGNHPYNV 150 (556)
T ss_dssp ------------------------------------------------------CCCSTTCSEEEEETGGGCSTTSHHHH
T ss_pred ------------------------------------------------------CCCCCCCCEEEEECCCCCCCCCHHHH
T ss_conf ------------------------------------------------------02503077999988753588645999
Q ss_pred HHHHHH--------HCCCEEEEECCCCCCCHHHHHHHH-------HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999951--------147178850878878523478899-------87245878842234666544566788899999998
Q 003502 356 KAVLAL--------ESSYKWALSGTPLQNRVGELYSLV-------RFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNS 420 (815)
Q Consensus 356 ~~~~~l--------~~~~rl~LTgTPi~n~~~el~~ll-------~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (815)
.....+ ....+++|||||.+++..++...+ ..++...... .
T Consensus 151 ~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~------------------------~ 206 (556)
T 4a2p_A 151 LMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAIST------------------------V 206 (556)
T ss_dssp HHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEC------------------------C
T ss_pred HHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEECC------------------------H
T ss_conf 9999998530136888769999478566751669999999999998539848433------------------------3
Q ss_pred CCHHHHHHHHHCCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHH
Q ss_conf 40235676641252111588----85225799999999866765432368766545899718988514799889999999
Q 003502 421 VRHFCWWNRYVATPIQTHGN----SYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYES 496 (815)
Q Consensus 421 ~~~~~~~~~~~~~~i~~~~~----~~~~~~~~~~~~~~ll~~~~lrr~k~~v~~~l~lp~~~~~~~~~~l~~~~~~~y~~ 496 (815)
..+...+..++..+...... ...........+...+..+.-.... +......+ ...+.... |..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------~~~~g~~~---~~~ 274 (556)
T 4a2p_A 207 RENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYS--VDTLSQNS-------KKDFGTQN---YEH 274 (556)
T ss_dssp CTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC------------------CCCSSHH---HHH
T ss_pred HCCHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHCCC-------CCCCCHHH---HHH
T ss_conf 2026778742799853799827876775999999999999999988863--20121033-------33443356---789
Q ss_pred HHHHHHHHHHHH--HHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 999999999999--870534553689999999999871495520013332335877012334454207444557897214
Q 003502 497 LYSESQAQFNTY--VQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVT 574 (815)
Q Consensus 497 l~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~lr~~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (815)
............ .........+..+......++.. .+....... .........+...|.......-+..-.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~ 347 (556)
T 4a2p_A 275 WIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKY-NDALIISED------ARIIDALSYLTEFFTNVKNGPYTELEQ 347 (556)
T ss_dssp HHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH------SCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHH------HHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 9999999877640543201678999999999999999-999988611------207899999999999987337987899
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 68842125457311015478899999997423445678878888644336766510022100022474168999999999
Q 003502 575 NCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIR 654 (815)
Q Consensus 575 ~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~~l~ 654 (815)
.....|+. ....+..........++|+..|.++|.
T Consensus 348 ~~~~~~~~---------------------------------------------~~~~l~~~~~~~~~~~~K~~~L~~~l~ 382 (556)
T 4a2p_A 348 HLTAKFQE---------------------------------------------KEPELIALSKDETNENPKLEELVCILD 382 (556)
T ss_dssp HHHHHHHT---------------------------------------------THHHHHHHHHCSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHH---------------------------------------------HHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 99998766---------------------------------------------788764210378999969999999999
Q ss_pred HHHHCCCCCEEEEECCCHHHHHHHHHHHHHC------------CCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 9884089960999915724799999999848------------9809999438999899999983027999369998458
Q 003502 655 FMVERDGSAKGIVFSQFTSFLDLINYSLHKS------------GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 722 (815)
Q Consensus 655 ~~~~~~~~~KvLIFsq~~~~~~~L~~~L~~~------------g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vll~st~ 722 (815)
..+...++.|+||||+++.+++.|...|... |..+..++|+++..+|..++++|++++.++||+ +|+
T Consensus 383 ~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLv-aT~ 461 (556)
T 4a2p_A 383 DAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLI-ATS 461 (556)
T ss_dssp HHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEE-EEC
T ss_pred HHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE-ECC
T ss_conf 9834799854999976589999999999858775500014787367765565669899999999840469658999-767
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 97411362235989996899990148898674441799874899999838959999999999998875110279810016
Q 003502 723 AGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFG 802 (815)
Q Consensus 723 ~g~~GlNL~~a~~vI~~d~~wnp~~~~QaigR~~R~GQ~~~V~Vy~lv~~~TiEe~i~~~~~~K~~~~~~~~~~~~~~~~ 802 (815)
++++|||++.+++||+||+||||..+.|++|| ||.+++.+|.|++.+++|++ +.....|..+++.++. .+.
T Consensus 462 ~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~k~~~~~~~i~----~i~ 532 (556)
T 4a2p_A 462 VADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVE----KIQ 532 (556)
T ss_dssp -----------CEEEEETCCSCHHHHHHC------------CCEEEEESCHHHHHH-HHHHHHHHHHHHHHHH----HHH
T ss_pred CHHCCCCCHHCCEEEEECCCCCHHHHHHHCCC----CCCCCCEEEEEEECCCHHHH-HHHHHHHHHHHHHHHH----HHH
T ss_conf 04337775217889991899978899886387----87888418999827636777-7755799999999999----720
Q ss_pred CCCHHHHH
Q ss_conf 89999998
Q 003502 803 KLTEADMR 810 (815)
Q Consensus 803 ~~~~~~~~ 810 (815)
.+..+++.
T Consensus 533 ~~~~~~~~ 540 (556)
T 4a2p_A 533 KWDEETFA 540 (556)
T ss_dssp TSCHHHHH
T ss_pred CCCHHHHH
T ss_conf 68967899
Done!