Query 003503
Match_columns 815
No_of_seqs 690 out of 5193
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 00:40:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003503.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003503hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0730 AAA+-type ATPase [Post 100.0 7E-120 2E-124 991.3 49.5 690 22-772 2-692 (693)
2 KOG0733 Nuclear AAA ATPase (VC 100.0 2E-113 4E-118 924.2 48.0 554 210-779 185-794 (802)
3 TIGR01243 CDC48 AAA family ATP 100.0 1.6E-98 3E-103 898.9 71.4 722 37-775 3-731 (733)
4 KOG0736 Peroxisome assembly fa 100.0 9.6E-85 2.1E-89 718.4 51.8 614 141-774 304-952 (953)
5 KOG0735 AAA+-type ATPase [Post 100.0 2.4E-72 5.1E-77 614.3 40.0 499 247-777 429-939 (952)
6 COG0464 SpoVK ATPases of the A 100.0 2E-66 4.4E-71 598.3 42.2 489 233-769 2-492 (494)
7 KOG0741 AAA+-type ATPase [Post 100.0 1.6E-58 3.5E-63 491.1 36.2 601 38-669 11-683 (744)
8 COG1222 RPT1 ATP-dependent 26S 100.0 7.7E-59 1.7E-63 477.6 23.6 251 480-755 143-393 (406)
9 KOG0738 AAA+-type ATPase [Post 100.0 4.5E-54 9.7E-59 443.9 20.9 285 478-775 202-490 (491)
10 COG1222 RPT1 ATP-dependent 26S 100.0 1.9E-49 4.1E-54 408.2 25.7 247 207-470 143-392 (406)
11 KOG0739 AAA+-type ATPase [Post 100.0 1.5E-49 3.3E-54 396.4 16.1 293 478-776 123-438 (439)
12 KOG0727 26S proteasome regulat 100.0 9E-48 1.9E-52 375.5 19.6 249 481-754 148-396 (408)
13 KOG0728 26S proteasome regulat 100.0 2.8E-47 6.1E-52 371.6 19.5 255 481-760 140-394 (404)
14 KOG0734 AAA+-type ATPase conta 100.0 3.7E-47 8.1E-52 404.9 17.3 228 482-713 298-525 (752)
15 CHL00195 ycf46 Ycf46; Provisio 100.0 8E-45 1.7E-49 408.3 35.5 399 308-773 81-484 (489)
16 KOG0733 Nuclear AAA ATPase (VC 100.0 6.1E-46 1.3E-50 401.7 23.1 270 204-474 500-773 (802)
17 KOG0730 AAA+-type ATPase [Post 100.0 1.6E-45 3.4E-50 405.5 22.0 251 208-473 427-677 (693)
18 KOG0726 26S proteasome regulat 100.0 4.6E-46 1E-50 370.4 14.7 249 481-754 178-426 (440)
19 KOG0652 26S proteasome regulat 100.0 9.8E-46 2.1E-50 362.7 16.6 250 481-755 164-413 (424)
20 KOG0729 26S proteasome regulat 100.0 3.7E-45 7.9E-50 359.7 17.2 259 479-770 168-426 (435)
21 KOG0737 AAA+-type ATPase [Post 100.0 9.5E-44 2.1E-48 368.9 19.6 287 483-775 87-382 (386)
22 KOG0731 AAA+-type ATPase conta 100.0 9.3E-44 2E-48 403.9 20.7 248 483-756 306-555 (774)
23 PTZ00454 26S protease regulato 100.0 3.1E-43 6.6E-48 388.0 22.8 253 480-757 137-389 (398)
24 KOG0736 Peroxisome assembly fa 100.0 1.4E-42 3.1E-47 384.5 22.3 269 207-476 664-938 (953)
25 COG0465 HflB ATP-dependent Zn 100.0 2.5E-42 5.5E-47 386.9 18.7 247 482-754 144-390 (596)
26 COG1223 Predicted ATPase (AAA+ 100.0 6.9E-42 1.5E-46 336.1 16.5 244 481-757 114-358 (368)
27 PRK03992 proteasome-activating 100.0 3.6E-41 7.9E-46 374.0 23.4 257 479-760 122-378 (389)
28 KOG0741 AAA+-type ATPase [Post 100.0 3.5E-42 7.5E-47 366.7 14.4 298 480-788 211-535 (744)
29 PTZ00361 26 proteosome regulat 100.0 1.1E-40 2.4E-45 369.3 20.4 249 481-754 176-424 (438)
30 KOG0740 AAA+-type ATPase [Post 100.0 1.9E-40 4.1E-45 357.7 15.7 280 479-776 144-426 (428)
31 KOG0738 AAA+-type ATPase [Post 100.0 9.6E-39 2.1E-43 330.4 20.7 263 209-475 206-474 (491)
32 COG1223 Predicted ATPase (AAA+ 100.0 4.8E-38 1E-42 309.1 24.5 303 140-470 50-355 (368)
33 KOG0727 26S proteasome regulat 100.0 9.7E-39 2.1E-43 312.2 19.4 247 207-470 147-396 (408)
34 KOG0726 26S proteasome regulat 100.0 2E-39 4.3E-44 323.1 13.8 246 208-470 178-426 (440)
35 KOG0652 26S proteasome regulat 100.0 1.9E-38 4.1E-43 311.5 20.3 258 181-438 131-397 (424)
36 KOG0728 26S proteasome regulat 100.0 1.6E-38 3.4E-43 310.4 19.2 246 207-470 139-388 (404)
37 TIGR01241 FtsH_fam ATP-depende 100.0 2.4E-38 5.2E-43 363.7 23.2 249 481-755 48-296 (495)
38 KOG0651 26S proteasome regulat 100.0 2.7E-39 5.8E-44 325.9 12.5 247 483-754 127-373 (388)
39 TIGR03689 pup_AAA proteasome A 100.0 4.9E-38 1.1E-42 352.3 21.6 252 480-754 174-478 (512)
40 KOG0732 AAA+-type ATPase conta 100.0 6.5E-38 1.4E-42 364.5 22.8 387 210-597 260-669 (1080)
41 KOG0734 AAA+-type ATPase conta 100.0 7.7E-38 1.7E-42 333.9 20.3 228 208-436 297-524 (752)
42 TIGR01242 26Sp45 26S proteasom 100.0 1.7E-37 3.6E-42 343.8 22.2 250 480-754 114-363 (364)
43 KOG0735 AAA+-type ATPase [Post 100.0 5.1E-37 1.1E-41 337.3 22.9 228 211-438 663-890 (952)
44 KOG0729 26S proteasome regulat 100.0 1.3E-37 2.9E-42 306.4 16.4 231 207-438 169-403 (435)
45 CHL00176 ftsH cell division pr 100.0 7.3E-37 1.6E-41 354.3 22.6 246 483-754 178-423 (638)
46 PTZ00454 26S protease regulato 100.0 5.6E-35 1.2E-39 322.4 24.0 246 208-470 138-386 (398)
47 PRK10733 hflB ATP-dependent me 100.0 2.8E-35 6.2E-40 345.5 22.3 248 483-756 147-394 (644)
48 CHL00206 ycf2 Ycf2; Provisiona 100.0 4E-35 8.6E-40 353.4 22.2 197 508-713 1616-1861(2281)
49 KOG0737 AAA+-type ATPase [Post 100.0 3.1E-35 6.7E-40 305.6 18.0 228 210-439 87-317 (386)
50 KOG0732 AAA+-type ATPase conta 100.0 8.5E-36 1.8E-40 346.9 15.3 266 482-759 259-530 (1080)
51 KOG0739 AAA+-type ATPase [Post 100.0 3.4E-35 7.3E-40 293.8 15.0 228 208-438 126-355 (439)
52 KOG0731 AAA+-type ATPase conta 100.0 2.9E-34 6.2E-39 326.7 21.9 229 210-439 306-539 (774)
53 PLN00020 ribulose bisphosphate 100.0 1.6E-33 3.4E-38 295.9 23.5 219 486-712 113-354 (413)
54 TIGR01243 CDC48 AAA family ATP 100.0 1.2E-33 2.6E-38 339.2 24.7 267 209-475 447-715 (733)
55 PTZ00361 26 proteosome regulat 100.0 1.5E-33 3.3E-38 312.5 23.5 246 208-470 176-424 (438)
56 PRK03992 proteasome-activating 100.0 3.2E-33 7E-38 310.5 23.4 250 208-474 124-376 (389)
57 COG0464 SpoVK ATPases of the A 100.0 4.6E-33 1E-37 321.1 24.0 249 209-473 236-486 (494)
58 TIGR02639 ClpA ATP-dependent C 100.0 1E-31 2.2E-36 321.3 30.3 437 210-714 177-716 (731)
59 COG0465 HflB ATP-dependent Zn 100.0 3.3E-32 7.1E-37 305.6 20.1 230 209-439 144-376 (596)
60 PRK11034 clpA ATP-dependent Cl 100.0 9E-31 2E-35 308.4 31.0 448 212-714 183-720 (758)
61 TIGR01242 26Sp45 26S proteasom 100.0 1.7E-30 3.8E-35 287.8 26.4 245 208-469 115-362 (364)
62 CHL00195 ycf46 Ycf46; Provisio 100.0 9.5E-31 2.1E-35 294.5 24.0 242 210-474 223-467 (489)
63 KOG0651 26S proteasome regulat 100.0 1.4E-31 3E-36 270.3 13.0 231 207-437 124-357 (388)
64 TIGR01241 FtsH_fam ATP-depende 100.0 1.7E-30 3.7E-35 298.8 22.4 244 209-470 49-295 (495)
65 TIGR03689 pup_AAA proteasome A 100.0 4.5E-30 9.7E-35 288.2 22.2 222 207-434 174-411 (512)
66 CHL00176 ftsH cell division pr 100.0 2.5E-29 5.5E-34 291.6 21.5 243 210-470 178-423 (638)
67 KOG0740 AAA+-type ATPase [Post 100.0 6.9E-29 1.5E-33 268.2 16.3 260 208-474 146-408 (428)
68 TIGR03345 VI_ClpV1 type VI sec 100.0 9.1E-27 2E-31 280.1 31.4 456 209-714 181-835 (852)
69 PLN00020 ribulose bisphosphate 100.0 1.3E-27 2.8E-32 251.5 20.5 216 212-432 112-350 (413)
70 CHL00095 clpC Clp protease ATP 100.0 5.7E-27 1.2E-31 283.6 28.6 455 211-714 175-786 (821)
71 PRK10733 hflB ATP-dependent me 100.0 1.6E-27 3.5E-32 280.1 22.6 226 211-437 148-376 (644)
72 TIGR03346 chaperone_ClpB ATP-d 100.0 4.9E-26 1.1E-30 276.2 32.7 457 210-715 168-831 (852)
73 CHL00206 ycf2 Ycf2; Provisiona 99.9 2.3E-27 5E-32 286.8 19.7 201 233-439 1614-1863(2281)
74 PRK10865 protein disaggregatio 99.9 7.3E-26 1.6E-30 273.3 31.8 454 210-714 173-833 (857)
75 COG0542 clpA ATP-binding subun 99.9 2.5E-25 5.5E-30 256.1 28.0 456 211-714 166-759 (786)
76 CHL00181 cbbX CbbX; Provisiona 99.9 3.9E-22 8.5E-27 212.1 16.1 215 487-715 22-260 (287)
77 KOG0744 AAA+-type ATPase [Post 99.9 1.6E-22 3.6E-27 205.6 9.6 187 486-674 140-342 (423)
78 TIGR02880 cbbX_cfxQ probable R 99.9 1.5E-21 3.2E-26 208.0 15.6 213 489-714 23-258 (284)
79 KOG0743 AAA+-type ATPase [Post 99.9 1.6E-21 3.4E-26 209.2 14.3 222 485-715 198-429 (457)
80 PF00004 AAA: ATPase family as 99.9 1.6E-21 3.5E-26 183.9 12.5 130 525-658 1-132 (132)
81 TIGR02881 spore_V_K stage V sp 99.9 2.6E-21 5.6E-26 204.6 15.5 215 487-715 5-244 (261)
82 KOG0742 AAA+-type ATPase [Post 99.9 5.3E-21 1.1E-25 199.5 15.1 180 520-706 382-589 (630)
83 PF00004 AAA: ATPase family as 99.8 1.3E-18 2.8E-23 164.1 15.1 129 252-381 1-131 (132)
84 CHL00181 cbbX CbbX; Provisiona 99.8 2.5E-17 5.4E-22 175.4 18.6 214 214-437 22-258 (287)
85 TIGR02880 cbbX_cfxQ probable R 99.7 3.2E-17 6.9E-22 174.8 17.9 211 216-436 23-256 (284)
86 PF05496 RuvB_N: Holliday junc 99.7 2.5E-17 5.5E-22 163.8 13.6 190 483-705 19-225 (233)
87 TIGR02881 spore_V_K stage V sp 99.7 1.2E-16 2.6E-21 169.1 18.7 211 214-436 5-241 (261)
88 COG2256 MGS1 ATPase related to 99.7 1.1E-16 2.4E-21 169.2 16.8 228 483-779 19-263 (436)
89 TIGR00763 lon ATP-dependent pr 99.7 4.9E-17 1.1E-21 196.2 15.4 204 488-712 320-557 (775)
90 TIGR02639 ClpA ATP-dependent C 99.7 7.2E-17 1.6E-21 193.8 16.3 245 485-775 179-454 (731)
91 KOG0744 AAA+-type ATPase [Post 99.7 1.1E-16 2.4E-21 163.5 10.4 149 247-397 175-341 (423)
92 KOG0742 AAA+-type ATPase [Post 99.7 6.2E-16 1.4E-20 161.9 15.8 176 248-428 383-587 (630)
93 PRK00080 ruvB Holliday junctio 99.7 1.5E-15 3.3E-20 166.1 19.7 233 484-774 21-273 (328)
94 TIGR00635 ruvB Holliday juncti 99.7 1.8E-15 3.9E-20 164.2 19.6 191 486-709 2-209 (305)
95 KOG0743 AAA+-type ATPase [Post 99.7 1.1E-15 2.4E-20 164.5 15.8 179 212-398 198-385 (457)
96 PRK11034 clpA ATP-dependent Cl 99.7 7.6E-16 1.7E-20 182.4 15.9 176 521-708 206-408 (758)
97 PF05496 RuvB_N: Holliday junc 99.6 4.8E-15 1E-19 147.6 17.5 183 207-418 16-215 (233)
98 COG2255 RuvB Holliday junction 99.6 5.7E-15 1.2E-19 149.3 17.7 233 484-774 22-274 (332)
99 COG0466 Lon ATP-dependent Lon 99.6 1.4E-14 3E-19 162.9 17.1 202 488-719 323-551 (782)
100 KOG1051 Chaperone HSP104 and r 99.6 1.3E-13 2.8E-18 161.9 25.7 158 217-397 189-364 (898)
101 PRK05342 clpX ATP-dependent pr 99.6 2.3E-14 4.9E-19 159.3 15.9 223 489-713 72-382 (412)
102 KOG2004 Mitochondrial ATP-depe 99.6 1.8E-14 4E-19 160.8 14.7 165 488-673 411-597 (906)
103 PRK13342 recombination factor 99.6 1E-13 2.2E-18 156.3 18.7 179 485-706 9-201 (413)
104 TIGR00390 hslU ATP-dependent p 99.6 3.1E-14 6.7E-19 154.5 13.5 176 489-668 13-342 (441)
105 PRK07003 DNA polymerase III su 99.5 1.1E-13 2.4E-18 159.1 18.2 188 483-708 11-227 (830)
106 PRK05201 hslU ATP-dependent pr 99.5 4E-14 8.7E-19 153.7 13.6 176 489-668 16-344 (443)
107 TIGR00763 lon ATP-dependent pr 99.5 1.2E-13 2.6E-18 167.0 18.9 164 215-396 320-505 (775)
108 PRK10787 DNA-binding ATP-depen 99.5 7.4E-14 1.6E-18 167.0 16.9 204 488-713 322-559 (784)
109 PRK12323 DNA polymerase III su 99.5 7.5E-14 1.6E-18 158.6 16.0 187 483-707 11-231 (700)
110 PRK10865 protein disaggregatio 99.5 3E-14 6.5E-19 172.9 13.6 166 485-676 175-358 (857)
111 TIGR03345 VI_ClpV1 type VI sec 99.5 3.2E-14 6.9E-19 172.0 13.8 185 484-694 183-390 (852)
112 PRK00080 ruvB Holliday junctio 99.5 4.5E-13 9.7E-18 146.7 20.2 193 207-429 17-226 (328)
113 COG2255 RuvB Holliday junction 99.5 2.4E-13 5.1E-18 137.7 16.2 182 208-418 19-217 (332)
114 PRK14962 DNA polymerase III su 99.5 2.1E-13 4.6E-18 154.3 17.9 184 483-704 9-221 (472)
115 PRK00149 dnaA chromosomal repl 99.5 1.2E-13 2.6E-18 157.6 15.8 173 523-711 149-332 (450)
116 TIGR00362 DnaA chromosomal rep 99.5 1.6E-13 3.6E-18 154.6 16.6 173 522-711 136-320 (405)
117 TIGR02902 spore_lonB ATP-depen 99.5 1.1E-13 2.4E-18 159.8 15.1 212 483-754 60-332 (531)
118 TIGR00382 clpX endopeptidase C 99.5 1.2E-13 2.6E-18 152.5 14.7 223 489-713 78-388 (413)
119 COG2256 MGS1 ATPase related to 99.5 2.8E-13 6.1E-18 143.6 16.1 176 207-420 16-208 (436)
120 PRK07940 DNA polymerase III su 99.5 1.3E-13 2.8E-18 152.6 13.8 191 486-702 3-215 (394)
121 TIGR00635 ruvB Holliday juncti 99.5 7.7E-13 1.7E-17 143.6 19.6 188 213-430 2-206 (305)
122 PRK14956 DNA polymerase III su 99.5 2.3E-13 4.9E-18 151.5 14.8 186 483-706 13-227 (484)
123 TIGR02928 orc1/cdc6 family rep 99.5 5.7E-13 1.2E-17 148.5 17.8 202 488-712 15-257 (365)
124 TIGR03346 chaperone_ClpB ATP-d 99.5 1.4E-13 3E-18 167.9 13.5 184 485-694 170-376 (852)
125 CHL00095 clpC Clp protease ATP 99.5 1.2E-13 2.5E-18 168.1 12.7 186 484-695 175-382 (821)
126 PRK14960 DNA polymerase III su 99.5 9.1E-13 2E-17 150.3 17.6 187 483-707 10-225 (702)
127 PRK14961 DNA polymerase III su 99.5 1.5E-12 3.3E-17 144.1 19.1 187 483-707 11-226 (363)
128 PRK14949 DNA polymerase III su 99.5 1.2E-12 2.5E-17 153.6 18.8 186 483-706 11-225 (944)
129 PRK12422 chromosomal replicati 99.5 7.5E-13 1.6E-17 149.2 16.5 170 522-707 141-319 (445)
130 PRK04195 replication factor C 99.5 5.5E-13 1.2E-17 153.3 15.5 192 483-709 9-207 (482)
131 PRK13341 recombination factor 99.5 6.9E-13 1.5E-17 156.7 16.0 181 484-706 24-222 (725)
132 PRK14088 dnaA chromosomal repl 99.5 7.5E-13 1.6E-17 149.6 15.4 172 523-711 131-315 (440)
133 PRK00411 cdc6 cell division co 99.4 2E-12 4.3E-17 145.6 18.1 178 522-712 55-265 (394)
134 PRK14086 dnaA chromosomal repl 99.4 1.5E-12 3.2E-17 148.8 16.5 173 523-711 315-498 (617)
135 KOG2028 ATPase related to the 99.4 2.3E-12 5E-17 133.8 15.6 209 523-781 163-395 (554)
136 PRK07994 DNA polymerase III su 99.4 1.4E-12 3.1E-17 151.0 15.5 186 483-706 11-225 (647)
137 PRK06645 DNA polymerase III su 99.4 2.1E-12 4.6E-17 146.7 15.5 190 482-709 15-237 (507)
138 PRK07764 DNA polymerase III su 99.4 3.6E-12 7.7E-17 152.5 17.7 186 483-706 10-226 (824)
139 PRK08691 DNA polymerase III su 99.4 4.7E-12 1E-16 146.0 17.7 188 483-708 11-227 (709)
140 KOG2004 Mitochondrial ATP-depe 99.4 2.1E-12 4.6E-17 144.5 14.3 163 215-396 411-596 (906)
141 PRK14958 DNA polymerase III su 99.4 3.4E-12 7.4E-17 146.1 16.1 188 483-708 11-227 (509)
142 PRK06893 DNA replication initi 99.4 3.2E-12 6.9E-17 132.4 13.9 160 523-705 40-207 (229)
143 PRK12402 replication factor C 99.4 6.2E-12 1.3E-16 138.6 16.6 189 483-707 10-229 (337)
144 PRK14963 DNA polymerase III su 99.4 4.6E-12 1E-16 144.7 15.7 184 483-704 9-220 (504)
145 PRK14952 DNA polymerase III su 99.4 7.1E-12 1.5E-16 144.6 17.3 188 483-708 8-226 (584)
146 PRK14964 DNA polymerase III su 99.4 3.4E-12 7.5E-17 143.8 14.1 188 483-708 8-224 (491)
147 PRK05563 DNA polymerase III su 99.4 1.6E-11 3.5E-16 142.5 20.0 188 483-708 11-227 (559)
148 PRK14959 DNA polymerase III su 99.4 5.1E-12 1.1E-16 145.2 15.4 184 483-704 11-223 (624)
149 PTZ00112 origin recognition co 99.4 8.7E-12 1.9E-16 143.9 17.0 167 525-707 784-987 (1164)
150 PRK14956 DNA polymerase III su 99.4 2E-11 4.3E-16 136.1 19.3 186 207-427 10-224 (484)
151 PRK14951 DNA polymerase III su 99.4 9.7E-12 2.1E-16 144.0 17.2 188 483-708 11-232 (618)
152 PRK07003 DNA polymerase III su 99.4 2.1E-11 4.5E-16 140.7 19.0 186 207-427 8-222 (830)
153 PLN03025 replication factor C 99.4 1.2E-11 2.7E-16 134.7 16.1 181 483-705 8-201 (319)
154 COG0466 Lon ATP-dependent Lon 99.4 7.8E-12 1.7E-16 141.1 14.7 164 215-396 323-508 (782)
155 PRK05896 DNA polymerase III su 99.3 2.1E-11 4.6E-16 139.4 18.4 188 483-708 11-227 (605)
156 PRK14957 DNA polymerase III su 99.3 9.9E-12 2.1E-16 142.1 15.7 186 483-706 11-225 (546)
157 PRK12323 DNA polymerase III su 99.3 1.4E-11 3E-16 140.5 16.6 187 207-428 8-228 (700)
158 TIGR02903 spore_lon_C ATP-depe 99.3 7.3E-11 1.6E-15 138.6 23.1 224 483-755 149-431 (615)
159 PRK14969 DNA polymerase III su 99.3 1.3E-11 2.7E-16 142.4 16.5 188 483-708 11-227 (527)
160 PRK04195 replication factor C 99.3 2.7E-11 5.8E-16 139.4 18.8 182 207-417 6-195 (482)
161 PF05673 DUF815: Protein of un 99.3 2.1E-11 4.5E-16 123.5 15.6 190 482-702 21-242 (249)
162 PRK07133 DNA polymerase III su 99.3 3.2E-11 6.9E-16 140.6 19.5 194 482-707 12-225 (725)
163 PRK14087 dnaA chromosomal repl 99.3 1.1E-11 2.3E-16 140.4 15.1 172 523-711 142-329 (450)
164 TIGR02397 dnaX_nterm DNA polym 99.3 1.2E-11 2.7E-16 137.2 15.3 188 483-708 9-225 (355)
165 TIGR03420 DnaA_homol_Hda DnaA 99.3 1.6E-11 3.4E-16 127.2 14.7 165 522-711 38-211 (226)
166 PF02359 CDC48_N: Cell divisio 99.3 5.9E-12 1.3E-16 109.2 9.5 80 37-118 1-85 (87)
167 PHA02544 44 clamp loader, smal 99.3 8.3E-12 1.8E-16 136.2 12.9 157 483-672 16-173 (316)
168 PRK14962 DNA polymerase III su 99.3 4.5E-11 9.7E-16 135.6 19.1 177 207-417 6-211 (472)
169 PRK13342 recombination factor 99.3 5.9E-11 1.3E-15 133.9 18.8 172 207-417 4-189 (413)
170 PRK07940 DNA polymerase III su 99.3 5.6E-11 1.2E-15 131.7 18.1 185 213-425 3-214 (394)
171 PRK06305 DNA polymerase III su 99.3 3.4E-11 7.4E-16 136.3 15.9 184 483-704 12-225 (451)
172 PRK14965 DNA polymerase III su 99.3 4.8E-11 1E-15 139.2 17.5 188 483-708 11-227 (576)
173 KOG0989 Replication factor C, 99.3 1.1E-10 2.3E-15 119.9 17.5 184 481-703 29-229 (346)
174 PRK14953 DNA polymerase III su 99.3 2.4E-11 5.3E-16 138.3 14.3 188 483-708 11-227 (486)
175 PF05673 DUF815: Protein of un 99.3 2.2E-10 4.7E-15 116.1 19.0 168 208-403 20-214 (249)
176 PRK14970 DNA polymerase III su 99.3 5.1E-11 1.1E-15 132.8 16.0 188 482-707 11-215 (367)
177 PRK08084 DNA replication initi 99.3 4.6E-11 9.9E-16 124.2 14.6 159 523-706 46-214 (235)
178 PRK14949 DNA polymerase III su 99.3 1.4E-10 3.1E-15 136.4 20.0 192 207-427 8-222 (944)
179 PRK14960 DNA polymerase III su 99.3 1.1E-10 2.5E-15 133.4 18.8 188 207-429 7-223 (702)
180 PLN03025 replication factor C 99.3 1.1E-10 2.3E-15 127.4 17.9 175 207-416 5-192 (319)
181 PRK06647 DNA polymerase III su 99.3 3.8E-11 8.2E-16 138.9 14.5 184 483-704 11-223 (563)
182 TIGR02902 spore_lonB ATP-depen 99.3 7.4E-11 1.6E-15 136.5 16.9 200 207-435 57-314 (531)
183 PRK05642 DNA replication initi 99.3 9.8E-11 2.1E-15 121.6 16.1 163 523-710 46-217 (234)
184 COG0593 DnaA ATPase involved i 99.3 7.7E-11 1.7E-15 128.8 15.6 175 522-713 113-298 (408)
185 PRK08903 DnaA regulatory inact 99.3 8.6E-11 1.9E-15 121.9 15.4 159 521-710 41-208 (227)
186 PRK07994 DNA polymerase III su 99.3 1.9E-10 4.2E-15 133.5 19.7 187 207-428 8-223 (647)
187 PRK14961 DNA polymerase III su 99.3 1.9E-10 4.1E-15 127.5 18.7 187 207-428 8-223 (363)
188 TIGR02640 gas_vesic_GvpN gas v 99.3 3.7E-11 7.9E-16 127.1 12.3 132 522-672 21-198 (262)
189 PF00308 Bac_DnaA: Bacterial d 99.2 3.6E-11 7.9E-16 123.4 11.5 170 523-709 35-216 (219)
190 TIGR01650 PD_CobS cobaltochela 99.2 5.2E-11 1.1E-15 126.8 12.5 143 518-674 60-235 (327)
191 COG0488 Uup ATPase components 99.2 1.1E-10 2.4E-15 133.3 16.1 63 294-370 157-219 (530)
192 TIGR03420 DnaA_homol_Hda DnaA 99.2 4E-10 8.7E-15 116.7 19.0 181 218-431 20-207 (226)
193 PRK10787 DNA-binding ATP-depen 99.2 2.2E-10 4.8E-15 137.4 19.3 163 215-396 322-506 (784)
194 PHA02544 44 clamp loader, smal 99.2 1.4E-10 3.1E-15 126.5 16.3 159 207-395 13-172 (316)
195 PRK08727 hypothetical protein; 99.2 1.6E-10 3.5E-15 120.0 15.6 159 523-706 42-209 (233)
196 PRK08451 DNA polymerase III su 99.2 9.2E-11 2E-15 133.5 14.7 189 483-709 9-226 (535)
197 PRK06645 DNA polymerase III su 99.2 3.9E-10 8.4E-15 128.4 19.7 194 207-429 13-233 (507)
198 PRK14955 DNA polymerase III su 99.2 5.6E-11 1.2E-15 133.2 12.7 188 483-708 11-235 (397)
199 TIGR02928 orc1/cdc6 family rep 99.2 6.6E-10 1.4E-14 123.9 21.0 201 215-435 15-256 (365)
200 PRK00149 dnaA chromosomal repl 99.2 1.9E-10 4.1E-15 131.4 17.0 155 250-417 149-315 (450)
201 PRK14948 DNA polymerase III su 99.2 3.5E-10 7.6E-15 132.3 19.2 184 483-704 11-225 (620)
202 PRK14964 DNA polymerase III su 99.2 3.6E-10 7.9E-15 127.6 18.6 189 207-430 5-222 (491)
203 PRK05342 clpX ATP-dependent pr 99.2 5.3E-10 1.1E-14 124.6 19.7 218 216-435 72-380 (412)
204 PRK00411 cdc6 cell division co 99.2 4.9E-10 1.1E-14 126.3 19.8 202 214-434 29-263 (394)
205 TIGR00362 DnaA chromosomal rep 99.2 2E-10 4.3E-15 129.6 16.5 167 249-428 136-313 (405)
206 PRK14958 DNA polymerase III su 99.2 2.4E-10 5.2E-15 131.0 17.3 188 207-429 8-224 (509)
207 COG1474 CDC6 Cdc6-related prot 99.2 3.8E-10 8.2E-15 123.9 18.1 177 522-713 42-249 (366)
208 PRK14954 DNA polymerase III su 99.2 4.1E-10 8.9E-15 131.0 19.2 189 483-709 11-236 (620)
209 PRK08691 DNA polymerase III su 99.2 3.4E-10 7.4E-15 130.8 18.1 189 207-430 8-225 (709)
210 TIGR00390 hslU ATP-dependent p 99.2 8.5E-11 1.8E-15 128.0 12.3 176 216-393 13-343 (441)
211 PRK12402 replication factor C 99.2 8.4E-10 1.8E-14 121.6 20.5 181 207-416 7-218 (337)
212 PRK09111 DNA polymerase III su 99.2 1.6E-10 3.5E-15 134.3 15.2 191 483-705 19-237 (598)
213 PRK05201 hslU ATP-dependent pr 99.2 8.2E-11 1.8E-15 128.2 11.6 176 216-393 16-345 (443)
214 PRK07764 DNA polymerase III su 99.2 4.8E-10 1.1E-14 134.4 19.1 186 207-427 7-223 (824)
215 PRK14963 DNA polymerase III su 99.2 7.5E-10 1.6E-14 126.7 19.8 178 207-418 6-211 (504)
216 COG1219 ClpX ATP-dependent pro 99.2 8.6E-11 1.9E-15 120.7 10.5 132 488-622 61-203 (408)
217 PRK14952 DNA polymerase III su 99.2 8.2E-10 1.8E-14 127.7 19.7 187 207-428 5-222 (584)
218 cd00009 AAA The AAA+ (ATPases 99.2 1.6E-10 3.4E-15 110.1 11.5 122 521-658 18-151 (151)
219 PF00308 Bac_DnaA: Bacterial d 99.2 1.5E-09 3.3E-14 111.4 19.4 166 250-426 35-209 (219)
220 PRK06620 hypothetical protein; 99.2 2.2E-10 4.7E-15 117.1 13.1 144 523-705 45-193 (214)
221 PRK00440 rfc replication facto 99.2 2.9E-10 6.2E-15 124.2 15.0 184 484-706 13-208 (319)
222 PRK14959 DNA polymerase III su 99.2 5.8E-10 1.2E-14 128.4 17.5 179 207-419 8-215 (624)
223 PRK14950 DNA polymerase III su 99.2 2.5E-10 5.4E-15 133.9 14.8 185 483-705 11-225 (585)
224 PRK06893 DNA replication initi 99.2 8.3E-10 1.8E-14 114.4 17.1 150 250-419 40-198 (229)
225 PRK14957 DNA polymerase III su 99.2 1.2E-09 2.7E-14 125.1 19.8 187 207-428 8-223 (546)
226 PRK14088 dnaA chromosomal repl 99.2 4.2E-10 9E-15 127.4 15.8 157 250-417 131-298 (440)
227 PRK14086 dnaA chromosomal repl 99.2 6.6E-10 1.4E-14 127.3 17.1 158 250-417 315-481 (617)
228 PRK08084 DNA replication initi 99.2 2.8E-09 6E-14 110.9 20.2 175 212-419 19-204 (235)
229 PRK14951 DNA polymerase III su 99.1 1.1E-09 2.3E-14 127.1 18.6 193 207-428 8-228 (618)
230 PRK13407 bchI magnesium chelat 99.1 2.2E-10 4.7E-15 123.9 12.0 160 484-672 4-216 (334)
231 PRK14969 DNA polymerase III su 99.1 7.3E-10 1.6E-14 127.9 16.6 188 207-429 8-224 (527)
232 PRK05896 DNA polymerase III su 99.1 1.4E-09 3.1E-14 124.5 18.6 177 207-417 8-213 (605)
233 PRK05563 DNA polymerase III su 99.1 1.5E-09 3.2E-14 126.2 19.1 188 207-429 8-224 (559)
234 KOG0989 Replication factor C, 99.1 8.8E-10 1.9E-14 113.3 15.0 179 207-417 28-223 (346)
235 TIGR02640 gas_vesic_GvpN gas v 99.1 1.2E-09 2.5E-14 115.7 16.6 133 248-396 20-198 (262)
236 cd00009 AAA The AAA+ (ATPases 99.1 1.3E-09 2.7E-14 103.8 15.4 121 248-381 18-150 (151)
237 KOG2028 ATPase related to the 99.1 1.2E-09 2.6E-14 113.9 15.9 191 207-435 130-347 (554)
238 COG1224 TIP49 DNA helicase TIP 99.1 1.4E-09 3.1E-14 113.5 16.3 111 629-767 322-446 (450)
239 PRK13341 recombination factor 99.1 1.4E-09 3E-14 129.0 18.5 183 207-429 20-221 (725)
240 PRK14971 DNA polymerase III su 99.1 1.1E-09 2.3E-14 128.3 17.2 186 483-706 12-227 (614)
241 PRK07133 DNA polymerase III su 99.1 2.1E-09 4.5E-14 125.7 19.3 192 207-427 10-221 (725)
242 TIGR02397 dnaX_nterm DNA polym 99.1 1.7E-09 3.6E-14 120.1 18.0 176 207-416 6-210 (355)
243 PTZ00112 origin recognition co 99.1 1.7E-09 3.7E-14 125.3 18.2 180 215-414 755-968 (1164)
244 PRK12422 chromosomal replicati 99.1 1.3E-09 2.9E-14 123.0 16.4 157 250-418 142-307 (445)
245 PRK14970 DNA polymerase III su 99.1 2.9E-09 6.2E-14 118.7 18.9 176 207-416 9-201 (367)
246 TIGR00382 clpX endopeptidase C 99.1 1.9E-09 4.1E-14 119.4 17.2 217 216-434 78-385 (413)
247 PRK08903 DnaA regulatory inact 99.1 5.4E-09 1.2E-13 108.4 19.5 180 211-428 14-202 (227)
248 COG5271 MDN1 AAA ATPase contai 99.1 5.3E-09 1.2E-13 124.6 20.8 133 248-396 887-1047(4600)
249 PHA02244 ATPase-like protein 99.1 2.9E-09 6.3E-14 114.6 17.2 125 522-663 119-265 (383)
250 KOG1969 DNA replication checkp 99.1 1.4E-09 3E-14 122.8 15.3 168 520-712 324-518 (877)
251 COG2812 DnaX DNA polymerase II 99.1 8.8E-10 1.9E-14 124.0 13.7 195 483-709 11-228 (515)
252 PRK14953 DNA polymerase III su 99.1 3.9E-09 8.4E-14 120.5 19.1 193 207-428 8-223 (486)
253 PF07724 AAA_2: AAA domain (Cd 99.1 2.5E-10 5.4E-15 112.3 8.1 111 521-638 2-131 (171)
254 PRK06647 DNA polymerase III su 99.1 4E-09 8.7E-14 122.2 19.0 187 207-428 8-223 (563)
255 PRK06305 DNA polymerase III su 99.1 5.7E-09 1.2E-13 118.3 19.8 176 207-416 9-214 (451)
256 PRK14965 DNA polymerase III su 99.1 2.6E-09 5.7E-14 124.8 17.5 185 207-426 8-221 (576)
257 PRK09087 hypothetical protein; 99.1 1.6E-09 3.4E-14 111.7 13.5 149 524-706 46-200 (226)
258 smart00382 AAA ATPases associa 99.1 6.7E-10 1.5E-14 104.8 9.9 126 523-659 3-147 (148)
259 CHL00081 chlI Mg-protoporyphyr 99.1 1.4E-09 3E-14 117.9 13.4 161 483-672 12-232 (350)
260 COG0714 MoxR-like ATPases [Gen 99.1 8.6E-10 1.9E-14 120.8 11.9 132 521-672 42-203 (329)
261 PRK00440 rfc replication facto 99.1 5.4E-09 1.2E-13 114.2 18.2 176 207-417 9-196 (319)
262 COG1220 HslU ATP-dependent pro 99.0 4.8E-09 1E-13 108.8 15.8 83 583-669 252-346 (444)
263 PRK05642 DNA replication initi 99.0 6.2E-09 1.3E-13 108.2 17.1 148 249-416 45-200 (234)
264 PF07728 AAA_5: AAA domain (dy 99.0 8.2E-11 1.8E-15 112.1 2.6 109 524-650 1-139 (139)
265 PRK08451 DNA polymerase III su 99.0 8E-09 1.7E-13 117.8 19.1 189 207-430 6-223 (535)
266 TIGR02030 BchI-ChlI magnesium 99.0 1.3E-09 2.9E-14 118.2 12.1 155 486-672 2-219 (337)
267 KOG0745 Putative ATP-dependent 99.0 4.5E-09 9.8E-14 112.2 15.5 100 523-622 227-332 (564)
268 TIGR00678 holB DNA polymerase 99.0 1.5E-09 3.2E-14 109.2 11.5 143 521-692 13-183 (188)
269 PRK08727 hypothetical protein; 99.0 9.3E-09 2E-13 106.8 17.8 147 249-417 41-197 (233)
270 TIGR02903 spore_lon_C ATP-depe 99.0 1.5E-08 3.3E-13 119.1 21.7 166 208-400 147-370 (615)
271 TIGR01650 PD_CobS cobaltochela 99.0 1.3E-09 2.8E-14 116.2 11.3 138 247-398 62-235 (327)
272 COG1123 ATPase components of v 99.0 2.4E-09 5.1E-14 120.4 13.8 110 243-362 29-216 (539)
273 PRK14948 DNA polymerase III su 99.0 1.2E-08 2.5E-13 119.7 19.7 184 207-418 8-216 (620)
274 PRK11331 5-methylcytosine-spec 99.0 1.7E-09 3.7E-14 119.4 11.8 121 522-658 194-357 (459)
275 PRK09112 DNA polymerase III su 99.0 6.1E-09 1.3E-13 114.1 15.8 190 484-706 19-245 (351)
276 PRK14087 dnaA chromosomal repl 99.0 7.5E-09 1.6E-13 117.4 17.0 170 250-430 142-324 (450)
277 PRK09111 DNA polymerase III su 99.0 1.5E-08 3.3E-13 117.9 19.5 194 207-429 16-237 (598)
278 PRK05564 DNA polymerase III su 99.0 4.7E-09 1E-13 114.2 14.5 171 485-693 1-183 (313)
279 PRK14954 DNA polymerase III su 99.0 1.8E-08 4E-13 117.4 19.5 185 207-419 8-223 (620)
280 COG2607 Predicted ATPase (AAA+ 99.0 1.6E-08 3.6E-13 100.5 16.0 169 480-679 52-246 (287)
281 PRK14955 DNA polymerase III su 99.0 1.2E-08 2.5E-13 114.6 17.0 177 207-417 8-221 (397)
282 PRK07471 DNA polymerase III su 99.0 2.5E-08 5.4E-13 109.8 19.2 184 484-702 15-239 (365)
283 COG1474 CDC6 Cdc6-related prot 99.0 2.4E-08 5.2E-13 109.8 18.8 200 216-436 18-248 (366)
284 TIGR02442 Cob-chelat-sub cobal 99.0 3.6E-09 7.8E-14 125.2 13.0 155 486-672 2-214 (633)
285 PRK14950 DNA polymerase III su 99.0 1.9E-08 4.2E-13 118.1 18.8 186 207-427 8-223 (585)
286 COG0542 clpA ATP-binding subun 99.0 3.1E-09 6.8E-14 123.9 11.8 147 520-678 189-352 (786)
287 TIGR03015 pepcterm_ATPase puta 98.9 1.4E-08 3E-13 108.1 15.8 190 524-755 45-267 (269)
288 smart00382 AAA ATPases associa 98.9 6.3E-09 1.4E-13 98.1 10.5 128 249-383 2-147 (148)
289 TIGR00764 lon_rel lon-related 98.9 7.6E-09 1.6E-13 121.3 13.1 54 481-549 11-64 (608)
290 PRK06620 hypothetical protein; 98.9 2.1E-08 4.5E-13 102.5 14.7 135 250-417 45-182 (214)
291 PHA02244 ATPase-like protein 98.9 4.6E-08 1E-12 105.4 17.8 122 248-385 118-263 (383)
292 KOG0927 Predicted transporter 98.9 3.1E-08 6.8E-13 109.0 16.6 29 244-272 96-124 (614)
293 PF01078 Mg_chelatase: Magnesi 98.9 8.7E-10 1.9E-14 109.6 4.0 142 487-662 2-205 (206)
294 COG0593 DnaA ATPase involved i 98.9 4.3E-08 9.3E-13 107.5 17.1 156 249-416 113-278 (408)
295 COG2607 Predicted ATPase (AAA+ 98.9 1E-07 2.2E-12 94.9 18.1 168 208-403 53-246 (287)
296 COG2812 DnaX DNA polymerase II 98.9 1.1E-08 2.4E-13 115.2 12.8 195 208-431 9-226 (515)
297 PRK13407 bchI magnesium chelat 98.9 6.6E-09 1.4E-13 112.5 10.3 159 210-395 3-215 (334)
298 PF07728 AAA_5: AAA domain (dy 98.9 1.4E-09 3.1E-14 103.5 4.5 109 251-374 1-139 (139)
299 COG0470 HolB ATPase involved i 98.9 1E-08 2.2E-13 112.3 11.6 125 524-669 26-178 (325)
300 PRK07399 DNA polymerase III su 98.9 9E-09 1.9E-13 111.2 10.8 183 486-703 2-223 (314)
301 PRK05707 DNA polymerase III su 98.9 2.4E-08 5.2E-13 108.5 13.5 148 521-693 21-196 (328)
302 COG0714 MoxR-like ATPases [Gen 98.8 2.7E-08 5.8E-13 109.1 13.6 130 247-393 41-200 (329)
303 PRK14971 DNA polymerase III su 98.8 1E-07 2.2E-12 111.9 19.1 176 207-416 9-214 (614)
304 PRK10636 putative ABC transpor 98.8 7.1E-09 1.5E-13 123.4 9.5 32 243-274 21-52 (638)
305 PRK04132 replication factor C 98.8 4E-08 8.7E-13 117.2 15.7 156 525-706 567-736 (846)
306 KOG1969 DNA replication checkp 98.8 7.3E-08 1.6E-12 109.2 16.3 194 208-416 264-502 (877)
307 PF05621 TniB: Bacterial TniB 98.8 1.3E-07 2.7E-12 99.3 16.3 182 249-440 61-276 (302)
308 COG5271 MDN1 AAA ATPase contai 98.8 3.7E-07 8.1E-12 109.6 21.6 134 524-672 890-1047(4600)
309 PRK11331 5-methylcytosine-spec 98.8 7.3E-08 1.6E-12 106.7 15.0 122 248-382 193-357 (459)
310 PRK09087 hypothetical protein; 98.8 7.9E-08 1.7E-12 99.2 14.4 140 249-416 44-187 (226)
311 KOG1514 Origin recognition com 98.8 1.2E-07 2.7E-12 107.3 16.8 205 524-759 424-660 (767)
312 PF07724 AAA_2: AAA domain (Cd 98.8 2.5E-08 5.4E-13 98.1 9.8 112 248-361 2-130 (171)
313 PRK09112 DNA polymerase III su 98.8 2.5E-07 5.5E-12 101.4 18.7 183 209-420 17-236 (351)
314 PRK13531 regulatory ATPase Rav 98.8 3.4E-08 7.5E-13 110.1 11.3 131 521-671 38-193 (498)
315 PRK08058 DNA polymerase III su 98.8 2.3E-08 5E-13 109.3 9.8 149 486-670 3-180 (329)
316 smart00350 MCM minichromosome 98.7 5E-08 1.1E-12 112.9 12.4 132 522-673 236-401 (509)
317 COG4172 ABC-type uncharacteriz 98.7 5.5E-07 1.2E-11 96.0 18.9 68 520-596 311-379 (534)
318 PRK11147 ABC transporter ATPas 98.7 2E-08 4.2E-13 119.8 8.7 32 243-274 23-54 (635)
319 TIGR02030 BchI-ChlI magnesium 98.7 1E-07 2.3E-12 103.5 13.4 157 213-395 2-218 (337)
320 PRK13549 xylose transporter AT 98.7 3.8E-08 8.3E-13 114.4 10.8 32 243-274 25-56 (506)
321 PF06068 TIP49: TIP49 C-termin 98.7 4.4E-08 9.5E-13 104.5 10.0 66 487-560 23-90 (398)
322 PF07726 AAA_3: ATPase family 98.7 5E-09 1.1E-13 95.7 2.4 104 524-650 1-129 (131)
323 CHL00081 chlI Mg-protoporyphyr 98.7 9E-08 1.9E-12 103.9 12.5 160 210-395 12-231 (350)
324 TIGR00678 holB DNA polymerase 98.7 1.8E-07 3.8E-12 94.1 13.8 142 249-416 14-183 (188)
325 KOG0991 Replication factor C, 98.7 1.2E-07 2.5E-12 93.8 11.7 135 207-370 19-162 (333)
326 COG1224 TIP49 DNA helicase TIP 98.7 7.4E-07 1.6E-11 93.6 18.1 60 215-285 39-103 (450)
327 TIGR00368 Mg chelatase-related 98.7 6.8E-08 1.5E-12 110.3 11.6 144 485-662 189-394 (499)
328 smart00763 AAA_PrkA PrkA AAA d 98.7 8E-08 1.7E-12 103.7 11.3 59 489-555 52-118 (361)
329 TIGR00602 rad24 checkpoint pro 98.7 2.4E-07 5.2E-12 108.0 15.7 63 207-277 76-138 (637)
330 TIGR00602 rad24 checkpoint pro 98.7 1.8E-07 3.8E-12 109.1 14.3 202 482-711 78-330 (637)
331 PRK06964 DNA polymerase III su 98.7 7.6E-08 1.7E-12 104.5 10.4 133 520-671 19-203 (342)
332 TIGR03269 met_CoM_red_A2 methy 98.7 6.8E-08 1.5E-12 112.8 10.6 31 243-273 20-50 (520)
333 PRK09700 D-allose transporter 98.7 4.8E-08 1E-12 113.8 8.9 32 243-274 25-56 (510)
334 PRK15439 autoinducer 2 ABC tra 98.7 4.9E-08 1.1E-12 113.6 9.0 32 243-274 31-62 (510)
335 TIGR02031 BchD-ChlD magnesium 98.7 2.5E-07 5.4E-12 108.5 14.8 132 523-673 17-175 (589)
336 PRK10938 putative molybdenum t 98.7 5.4E-08 1.2E-12 112.9 9.2 32 243-274 23-54 (490)
337 COG1220 HslU ATP-dependent pro 98.7 2.2E-07 4.8E-12 96.6 12.5 67 216-282 16-83 (444)
338 PF07726 AAA_3: ATPase family 98.7 1.1E-08 2.4E-13 93.5 2.6 102 251-370 1-127 (131)
339 PRK15064 ABC transporter ATP-b 98.7 7E-08 1.5E-12 113.0 9.9 32 243-274 21-52 (530)
340 PRK05564 DNA polymerase III su 98.6 7.5E-07 1.6E-11 97.0 17.3 152 213-396 2-165 (313)
341 PRK10982 galactose/methyl gala 98.6 6.8E-08 1.5E-12 112.0 9.5 32 243-274 18-49 (491)
342 PRK15134 microcin C ABC transp 98.6 1.5E-07 3.3E-12 110.1 12.5 32 243-274 29-60 (529)
343 TIGR02974 phageshock_pspF psp 98.6 1.5E-07 3.3E-12 102.6 11.5 169 522-709 22-233 (329)
344 KOG0991 Replication factor C, 98.6 1.1E-07 2.3E-12 94.1 9.1 182 483-704 22-214 (333)
345 PRK07471 DNA polymerase III su 98.6 1.1E-06 2.4E-11 96.9 18.2 180 209-419 13-233 (365)
346 PRK10762 D-ribose transporter 98.6 7.1E-08 1.5E-12 112.1 9.2 32 243-274 24-55 (501)
347 TIGR02655 circ_KaiC circadian 98.6 3.6E-06 7.7E-11 97.0 23.0 78 518-595 259-367 (484)
348 COG1221 PspF Transcriptional r 98.6 7.6E-08 1.6E-12 105.2 8.7 172 523-713 102-313 (403)
349 COG1219 ClpX ATP-dependent pro 98.6 8E-08 1.7E-12 99.2 8.1 98 249-346 97-203 (408)
350 PLN03073 ABC transporter F fam 98.6 7.8E-08 1.7E-12 115.1 9.4 30 243-272 197-226 (718)
351 PRK08116 hypothetical protein; 98.6 6.9E-08 1.5E-12 102.2 7.7 129 522-669 114-257 (268)
352 PRK13531 regulatory ATPase Rav 98.6 3.1E-07 6.7E-12 102.6 12.8 134 247-394 37-192 (498)
353 PF05621 TniB: Bacterial TniB 98.6 6.4E-07 1.4E-11 94.1 14.1 177 522-713 61-273 (302)
354 PRK11608 pspF phage shock prot 98.6 1.7E-07 3.6E-12 102.4 10.1 169 522-709 29-240 (326)
355 PRK09862 putative ATP-dependen 98.6 4.6E-07 1E-11 103.1 13.8 122 522-662 210-391 (506)
356 PF13177 DNA_pol3_delta2: DNA 98.6 1.6E-07 3.5E-12 91.8 8.0 134 492-659 1-161 (162)
357 TIGR02633 xylG D-xylose ABC tr 98.6 2.2E-07 4.8E-12 108.0 10.6 32 243-274 21-52 (500)
358 PF01078 Mg_chelatase: Magnesi 98.6 1.1E-07 2.3E-12 94.9 6.6 46 214-274 2-47 (206)
359 TIGR01817 nifA Nif-specific re 98.6 2.6E-07 5.6E-12 108.1 11.0 197 485-711 193-430 (534)
360 PRK06871 DNA polymerase III su 98.5 8.7E-07 1.9E-11 95.7 13.8 128 521-671 23-178 (325)
361 PRK11819 putative ABC transpor 98.5 2.4E-07 5.1E-12 109.0 10.1 32 243-274 27-58 (556)
362 KOG0066 eIF2-interacting prote 98.5 8.3E-07 1.8E-11 94.9 13.0 31 243-273 284-314 (807)
363 PF06068 TIP49: TIP49 C-termin 98.5 3.2E-06 7E-11 90.5 17.5 63 215-285 24-88 (398)
364 PRK15424 propionate catabolism 98.5 2.5E-07 5.4E-12 106.4 9.8 191 486-709 217-465 (538)
365 PRK11288 araG L-arabinose tran 98.5 1.4E-07 3.1E-12 109.5 7.9 31 243-273 24-54 (501)
366 PRK13409 putative ATPase RIL; 98.5 2E-07 4.3E-12 109.5 9.1 29 246-274 96-124 (590)
367 TIGR02442 Cob-chelat-sub cobal 98.5 4.8E-07 1E-11 107.3 12.0 156 213-394 2-212 (633)
368 COG0470 HolB ATPase involved i 98.5 7.7E-07 1.7E-11 97.4 12.8 147 216-391 2-176 (325)
369 PRK10261 glutathione transport 98.5 5.2E-07 1.1E-11 107.4 12.2 46 513-558 339-388 (623)
370 PRK07993 DNA polymerase III su 98.5 8.5E-07 1.8E-11 96.7 12.8 147 520-692 22-196 (334)
371 TIGR02329 propionate_PrpR prop 98.5 2.9E-07 6.3E-12 106.0 9.1 195 485-709 209-450 (526)
372 TIGR03719 ABC_ABC_ChvD ATP-bin 98.5 3.7E-07 8E-12 107.3 10.2 31 243-273 25-55 (552)
373 PRK11388 DNA-binding transcrip 98.5 4.9E-07 1.1E-11 108.2 11.3 168 522-709 348-554 (638)
374 PRK05707 DNA polymerase III su 98.5 2.6E-06 5.6E-11 92.7 15.8 128 249-395 22-177 (328)
375 PRK04132 replication factor C 98.5 2.1E-06 4.6E-11 102.7 16.2 154 248-423 563-730 (846)
376 COG3829 RocR Transcriptional r 98.5 2.3E-07 4.9E-12 103.2 7.1 194 484-709 241-479 (560)
377 KOG1942 DNA helicase, TBP-inte 98.5 2.6E-06 5.6E-11 87.0 14.0 40 521-560 63-104 (456)
378 PRK07399 DNA polymerase III su 98.5 2.8E-06 6E-11 92.0 15.3 179 213-422 2-219 (314)
379 KOG2227 Pre-initiation complex 98.5 6.1E-06 1.3E-10 89.9 17.3 179 520-712 173-382 (529)
380 TIGR03015 pepcterm_ATPase puta 98.5 6.4E-06 1.4E-10 87.7 17.5 173 250-436 44-249 (269)
381 COG3604 FhlA Transcriptional r 98.4 3.4E-07 7.3E-12 100.4 7.4 195 484-709 219-456 (550)
382 PRK08769 DNA polymerase III su 98.4 1.7E-06 3.6E-11 93.3 12.6 154 520-697 24-205 (319)
383 PF00158 Sigma54_activat: Sigm 98.4 3.9E-07 8.5E-12 89.4 6.9 113 523-655 23-159 (168)
384 COG1116 TauB ABC-type nitrate/ 98.4 5.3E-07 1.2E-11 91.5 7.9 32 243-274 23-54 (248)
385 PRK08116 hypothetical protein; 98.4 1.6E-06 3.5E-11 91.8 12.0 100 249-360 114-220 (268)
386 PRK09302 circadian clock prote 98.4 1.7E-05 3.7E-10 92.4 21.5 78 518-595 269-377 (509)
387 PF00158 Sigma54_activat: Sigm 98.4 5E-07 1.1E-11 88.7 7.3 120 217-361 1-144 (168)
388 PRK08058 DNA polymerase III su 98.4 2.7E-06 5.9E-11 93.0 13.8 147 214-393 4-179 (329)
389 KOG0062 ATPase component of AB 98.4 6.1E-06 1.3E-10 90.9 16.2 110 243-366 100-260 (582)
390 PRK15429 formate hydrogenlyase 98.4 2E-06 4.4E-11 103.6 14.0 197 485-711 373-611 (686)
391 KOG0745 Putative ATP-dependent 98.4 6.3E-07 1.4E-11 96.1 8.1 97 249-345 226-331 (564)
392 PRK05022 anaerobic nitric oxid 98.4 2.3E-06 5E-11 99.3 13.4 171 522-711 210-422 (509)
393 COG0606 Predicted ATPase with 98.4 8.1E-08 1.8E-12 105.3 0.9 48 484-546 175-222 (490)
394 PRK09183 transposase/IS protei 98.4 1.4E-06 3.1E-11 91.8 10.2 75 246-321 99-177 (259)
395 PRK08181 transposase; Validate 98.4 9.6E-07 2.1E-11 93.0 8.7 100 522-637 106-209 (269)
396 COG1120 FepC ABC-type cobalami 98.4 9.1E-07 2E-11 91.5 8.2 32 243-274 22-53 (258)
397 PRK08699 DNA polymerase III su 98.4 1.2E-06 2.6E-11 95.2 9.5 132 520-670 19-183 (325)
398 PRK06090 DNA polymerase III su 98.4 2.3E-06 5E-11 92.2 11.5 129 520-670 23-178 (319)
399 PRK13765 ATP-dependent proteas 98.4 1.4E-06 3E-11 102.0 10.5 53 480-547 23-75 (637)
400 COG2204 AtoC Response regulato 98.4 1.1E-06 2.5E-11 97.8 9.1 197 487-715 140-380 (464)
401 TIGR00368 Mg chelatase-related 98.3 4.4E-06 9.6E-11 95.6 13.6 48 212-274 189-236 (499)
402 PRK10820 DNA-binding transcrip 98.3 2E-06 4.2E-11 100.0 10.9 169 523-710 228-438 (520)
403 PRK09183 transposase/IS protei 98.3 9E-07 2E-11 93.3 7.4 71 522-593 102-176 (259)
404 PRK07952 DNA replication prote 98.3 1.5E-06 3.2E-11 90.3 8.8 100 523-637 100-205 (244)
405 PF13401 AAA_22: AAA domain; P 98.3 3.2E-06 6.9E-11 79.3 10.3 98 249-358 4-125 (131)
406 TIGR00764 lon_rel lon-related 98.3 1.2E-05 2.6E-10 94.7 17.2 53 209-276 12-64 (608)
407 COG1239 ChlI Mg-chelatase subu 98.3 6.8E-06 1.5E-10 89.2 13.6 160 211-396 13-232 (423)
408 PF13173 AAA_14: AAA domain 98.3 3.4E-06 7.4E-11 79.0 10.0 70 249-320 2-73 (128)
409 PF03215 Rad17: Rad17 cell cyc 98.3 6.9E-06 1.5E-10 94.3 14.3 172 523-710 46-269 (519)
410 PRK08181 transposase; Validate 98.3 2.4E-06 5.2E-11 90.1 9.6 73 248-322 105-181 (269)
411 PF13173 AAA_14: AAA domain 98.3 2.9E-06 6.4E-11 79.5 9.2 119 523-663 3-126 (128)
412 KOG2680 DNA helicase TIP49, TB 98.3 1.9E-05 4.1E-10 81.1 15.4 98 629-754 319-429 (454)
413 PRK06526 transposase; Provisio 98.3 1.2E-06 2.6E-11 91.9 7.1 100 522-637 98-201 (254)
414 COG1121 ZnuC ABC-type Mn/Zn tr 98.3 1.6E-06 3.4E-11 89.3 7.6 112 243-365 24-203 (254)
415 COG1136 SalX ABC-type antimicr 98.3 3.4E-06 7.5E-11 85.5 9.6 32 243-274 25-56 (226)
416 PRK08939 primosomal protein Dn 98.3 1.5E-06 3.2E-11 93.7 7.3 101 522-637 156-261 (306)
417 cd03216 ABC_Carb_Monos_I This 98.3 2.2E-06 4.7E-11 84.0 7.9 110 243-363 20-144 (163)
418 PRK12377 putative replication 98.3 2.4E-06 5.2E-11 89.0 8.5 100 523-637 102-206 (248)
419 COG4619 ABC-type uncharacteriz 98.3 3E-06 6.4E-11 80.1 8.2 33 243-275 23-55 (223)
420 PF13177 DNA_pol3_delta2: DNA 98.3 1.1E-05 2.4E-10 78.8 12.5 132 219-381 1-159 (162)
421 COG1126 GlnQ ABC-type polar am 98.3 3E-06 6.5E-11 83.8 8.3 108 243-361 22-196 (240)
422 PRK12377 putative replication 98.3 6.2E-06 1.4E-10 85.9 11.2 70 249-320 101-175 (248)
423 PRK06526 transposase; Provisio 98.2 2.5E-06 5.3E-11 89.5 8.3 72 248-321 97-172 (254)
424 COG3829 RocR Transcriptional r 98.2 2.2E-06 4.8E-11 95.5 8.1 154 211-392 241-426 (560)
425 COG3839 MalK ABC-type sugar tr 98.2 2.1E-06 4.6E-11 92.3 7.8 109 243-361 23-194 (338)
426 COG1124 DppF ABC-type dipeptid 98.2 3.2E-06 7E-11 85.2 8.5 110 243-362 27-203 (252)
427 COG3842 PotA ABC-type spermidi 98.2 1.6E-06 3.4E-11 93.8 6.7 110 243-362 25-198 (352)
428 cd03222 ABC_RNaseL_inhibitor T 98.2 1.9E-06 4.2E-11 85.2 6.5 76 244-319 20-100 (177)
429 smart00350 MCM minichromosome 98.2 3.9E-06 8.4E-11 97.3 10.1 131 249-396 236-400 (509)
430 COG1118 CysA ABC-type sulfate/ 98.2 3.6E-06 7.8E-11 87.3 8.5 110 243-362 22-199 (345)
431 TIGR02974 phageshock_pspF psp 98.2 5.1E-06 1.1E-10 90.7 10.1 146 218-391 2-178 (329)
432 PF01695 IstB_IS21: IstB-like 98.2 1.3E-06 2.9E-11 86.6 5.0 70 521-592 46-119 (178)
433 PRK06964 DNA polymerase III su 98.2 1.2E-05 2.5E-10 87.6 12.7 132 247-394 19-202 (342)
434 PRK06871 DNA polymerase III su 98.2 3E-05 6.6E-10 83.8 15.7 127 249-395 24-178 (325)
435 KOG0990 Replication factor C, 98.2 7.9E-06 1.7E-10 85.1 10.5 159 484-677 37-208 (360)
436 COG1125 OpuBA ABC-type proline 98.2 3E-06 6.6E-11 85.5 7.3 132 243-400 21-155 (309)
437 PRK15424 propionate catabolism 98.2 4.2E-06 9.1E-11 96.4 9.5 125 212-361 216-373 (538)
438 PF01637 Arch_ATPase: Archaeal 98.2 2E-05 4.4E-10 81.4 13.7 180 219-418 3-228 (234)
439 COG2884 FtsE Predicted ATPase 98.2 6.1E-06 1.3E-10 79.9 8.7 111 243-364 22-200 (223)
440 TIGR02031 BchD-ChlD magnesium 98.2 8.1E-06 1.8E-10 95.9 11.7 134 250-396 17-174 (589)
441 PF01637 Arch_ATPase: Archaeal 98.2 3E-06 6.4E-11 87.7 7.3 161 522-694 20-228 (234)
442 COG1239 ChlI Mg-chelatase subu 98.2 8.6E-06 1.9E-10 88.5 10.8 161 484-674 13-234 (423)
443 PRK15429 formate hydrogenlyase 98.2 2.6E-05 5.7E-10 94.0 16.4 150 212-390 373-554 (686)
444 COG1484 DnaC DNA replication p 98.2 1.3E-05 2.8E-10 84.1 12.0 73 248-321 104-180 (254)
445 PRK11608 pspF phage shock prot 98.2 6.3E-06 1.4E-10 90.1 10.0 149 214-390 5-184 (326)
446 PF13401 AAA_22: AAA domain; P 98.2 9.5E-06 2.1E-10 76.0 9.9 97 523-634 5-125 (131)
447 PRK05022 anaerobic nitric oxid 98.2 1.8E-05 4E-10 91.9 14.2 150 213-390 185-365 (509)
448 COG1122 CbiO ABC-type cobalt t 98.2 2.7E-07 5.9E-12 95.1 -0.8 98 243-340 24-124 (235)
449 COG1221 PspF Transcriptional r 98.2 5.3E-06 1.2E-10 90.9 8.9 126 210-360 73-223 (403)
450 COG1484 DnaC DNA replication p 98.2 3.7E-06 8.1E-11 88.2 7.3 68 521-593 104-179 (254)
451 TIGR01817 nifA Nif-specific re 98.2 9.5E-06 2.1E-10 95.0 11.5 63 212-285 193-258 (534)
452 cd01120 RecA-like_NTPases RecA 98.2 1.6E-05 3.5E-10 77.1 11.4 111 525-639 2-139 (165)
453 PRK06921 hypothetical protein; 98.2 1.2E-05 2.5E-10 85.2 11.0 69 248-319 116-188 (266)
454 cd03214 ABC_Iron-Siderophores_ 98.1 3.6E-06 7.7E-11 83.9 6.4 111 243-363 19-160 (180)
455 PRK06835 DNA replication prote 98.1 1.3E-05 2.8E-10 87.1 11.1 99 249-359 183-287 (329)
456 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.1 4E-06 8.8E-11 80.3 6.3 77 243-319 20-99 (144)
457 PRK07993 DNA polymerase III su 98.1 3.7E-05 7.9E-10 84.0 14.5 127 248-393 23-177 (334)
458 PRK07952 DNA replication prote 98.1 7E-06 1.5E-10 85.3 8.4 70 250-321 100-175 (244)
459 cd03228 ABCC_MRP_Like The MRP 98.1 5.7E-06 1.2E-10 81.7 7.4 110 243-364 22-158 (171)
460 PRK09862 putative ATP-dependen 98.1 1E-05 2.3E-10 92.2 10.4 125 246-386 207-391 (506)
461 KOG2035 Replication factor C, 98.1 0.00015 3.3E-09 74.1 17.1 185 208-421 6-225 (351)
462 PRK06921 hypothetical protein; 98.1 5.3E-06 1.2E-10 87.7 7.1 68 522-592 117-188 (266)
463 PRK06835 DNA replication prote 98.1 4.6E-06 1E-10 90.5 6.7 69 523-593 184-258 (329)
464 PF01695 IstB_IS21: IstB-like 98.1 4.8E-06 1E-10 82.6 6.0 71 247-319 45-119 (178)
465 PRK10820 DNA-binding transcrip 98.1 2.8E-05 6E-10 90.5 13.2 152 210-389 199-381 (520)
466 TIGR02329 propionate_PrpR prop 98.1 8.4E-06 1.8E-10 94.1 8.8 96 212-321 209-320 (526)
467 PRK08699 DNA polymerase III su 98.1 2.2E-05 4.7E-10 85.4 11.4 131 247-393 19-182 (325)
468 PF03215 Rad17: Rad17 cell cyc 98.1 7.5E-05 1.6E-09 85.9 16.2 65 207-279 11-75 (519)
469 cd03247 ABCC_cytochrome_bd The 98.1 1E-05 2.3E-10 80.4 8.1 110 243-364 22-160 (178)
470 PRK08769 DNA polymerase III su 98.1 0.00013 2.9E-09 78.8 17.1 129 249-393 26-182 (319)
471 PTZ00111 DNA replication licen 98.1 7.2E-06 1.6E-10 97.8 7.9 132 520-671 490-656 (915)
472 cd03246 ABCC_Protease_Secretio 98.1 1.4E-05 3.1E-10 79.1 8.8 108 244-362 23-157 (173)
473 PF05729 NACHT: NACHT domain 98.1 3.4E-05 7.4E-10 75.2 11.4 140 251-397 2-164 (166)
474 COG2204 AtoC Response regulato 98.0 1.1E-05 2.3E-10 90.2 8.3 151 213-391 139-320 (464)
475 cd00267 ABC_ATPase ABC (ATP-bi 98.0 6.1E-06 1.3E-10 80.3 5.6 79 243-321 19-111 (157)
476 PRK06090 DNA polymerase III su 98.0 0.00011 2.4E-09 79.3 15.8 127 249-394 25-178 (319)
477 cd03230 ABC_DR_subfamily_A Thi 98.0 9.8E-06 2.1E-10 80.2 7.1 109 243-362 20-156 (173)
478 COG4608 AppF ABC-type oligopep 98.0 8.9E-06 1.9E-10 83.8 6.8 109 243-361 33-170 (268)
479 cd03229 ABC_Class3 This class 98.0 6.5E-06 1.4E-10 81.9 5.7 111 243-363 20-163 (178)
480 PRK11388 DNA-binding transcrip 98.0 2.9E-05 6.3E-10 93.0 12.2 152 211-390 321-500 (638)
481 PRK06851 hypothetical protein; 98.0 0.00015 3.3E-09 79.3 16.6 26 249-274 30-55 (367)
482 TIGR02915 PEP_resp_reg putativ 98.0 9.9E-06 2.1E-10 92.9 7.7 169 523-711 163-374 (445)
483 PF14532 Sigma54_activ_2: Sigm 98.0 5E-06 1.1E-10 79.0 4.4 59 522-594 21-82 (138)
484 TIGR02237 recomb_radB DNA repa 98.0 2.9E-05 6.3E-10 79.3 10.3 78 245-322 8-111 (209)
485 PRK08939 primosomal protein Dn 98.0 2.3E-05 5E-10 84.5 9.9 71 248-320 155-229 (306)
486 PRK15115 response regulator Gl 98.0 2.1E-05 4.4E-10 90.3 9.9 166 523-709 158-367 (444)
487 smart00763 AAA_PrkA PrkA AAA d 98.0 1.5E-05 3.2E-10 86.4 7.9 75 583-674 238-329 (361)
488 cd01120 RecA-like_NTPases RecA 98.0 2.8E-05 6E-10 75.4 9.3 72 252-323 2-100 (165)
489 KOG1942 DNA helicase, TBP-inte 98.0 0.00021 4.4E-09 73.4 15.5 29 247-275 62-90 (456)
490 COG4618 ArpD ABC-type protease 98.0 1.5E-05 3.4E-10 87.7 7.7 43 243-285 356-400 (580)
491 PRK10923 glnG nitrogen regulat 97.9 4.6E-05 1E-09 88.0 11.7 170 522-710 161-372 (469)
492 COG1618 Predicted nucleotide k 97.9 0.00011 2.5E-09 69.4 11.7 27 248-274 4-30 (179)
493 cd03213 ABCG_EPDR ABCG transpo 97.9 2.4E-05 5.2E-10 79.0 7.9 108 243-361 29-171 (194)
494 cd03238 ABC_UvrA The excision 97.9 4.8E-05 1E-09 75.3 9.8 109 243-362 15-150 (176)
495 PF03969 AFG1_ATPase: AFG1-lik 97.9 2E-05 4.4E-10 86.6 7.9 141 519-687 59-208 (362)
496 PRK05917 DNA polymerase III su 97.9 5.9E-05 1.3E-09 79.9 10.9 121 520-659 17-154 (290)
497 PRK11650 ugpC glycerol-3-phosp 97.9 1.5E-05 3.2E-10 88.1 6.5 32 243-274 24-55 (356)
498 COG4167 SapF ABC-type antimicr 97.9 6.2E-06 1.4E-10 78.9 2.9 33 243-275 33-65 (267)
499 COG1127 Ttg2A ABC-type transpo 97.9 1.8E-05 3.9E-10 79.7 6.1 31 244-274 29-59 (263)
500 COG1126 GlnQ ABC-type polar am 97.9 8E-06 1.7E-10 80.9 3.6 45 512-556 16-64 (240)
No 1
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-120 Score=991.34 Aligned_cols=690 Identities=61% Similarity=1.003 Sum_probs=642.9
Q ss_pred CccchhhhhcCCCCceEEEccccCCCccEEEeCHHHHHhcCCCCCCEEEEecCCCceEEEEEEecCCCCCCeEEecHHhh
Q 003503 22 KDYSTAILDRKKSPNRLVVDEAINDDNSVITMHPNTMEKLQFFRGDTVLVKGKKRKDTVCVVLSDELCEASKVRVNKVVR 101 (815)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r 101 (815)
.+++++|+..+..++.++|.+ .++.++.+.+++..|..+++..| |.+.|+.+...++.+...+. ....+.++...|
T Consensus 2 ~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~l~~g--~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~r 77 (693)
T KOG0730|consen 2 ESPSTAILPVKCPQNNLVVLS-INDDASVVVLSEGAMDKLGLLRG--VLLDGKKRREPVDAVVQDET-SELIGRQTMVSR 77 (693)
T ss_pred CcccccccccccCCCCeEEec-CCCccchheecHHHHhhhcCCcc--eEEECccccCCccceeccCC-ccccchhhheec
Confidence 478899999999999999988 45555689999999999999999 99999887666555443444 678889999999
Q ss_pred hhcccccCCeeEEEecCCCCCCcEEEecccCCcccCcchhhHHHHhhHhhhhcCcccccCcEEEEecCceeEEEEEEEec
Q 003503 102 SNLRVRLGDVVSVHPCPDVKYGRRVHILPIDDTIEGVTGNLFDAYLKPYFMESYRPVRKGDLFLVRGGMRSVEFKVIETD 181 (815)
Q Consensus 102 ~~~~~~~g~~v~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~ 181 (815)
.++.++.|+.|.+++++.+..+.++.+.|+..+..++..+.++.+.+.|+....+++..|+++ ..+..+.|++++..
T Consensus 78 ~~l~~~~~~~~~~~~~p~v~~~~~i~~l~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 154 (693)
T KOG0730|consen 78 SNLRLQLGRLLHSSDCPSVKRPARIAVLPVDDTSEGIAGELFDVLERPFLLEALRPLVKGDTF---AGLNPAEFKVLELD 154 (693)
T ss_pred cchhhcccceecccCCCCccccceeeeeehhhccccchhhhhhhhhhhhhhhhhCccccccch---hhhhhhhhhccccc
Confidence 999999999999999888888888999999998888888888889999999888999899887 44456778888887
Q ss_pred CCceeeeCCCceEEecCCCCccccccccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCc
Q 003503 182 PGEYCVVAPDTEIFCEGEPVKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSG 261 (815)
Q Consensus 182 p~~~~~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtG 261 (815)
|.. ++.++|.+.+.+++......+ +.+++ +++||+..++..+++++++|+.+|..+.++|+.+|+++|+|||||||
T Consensus 155 ~~~--~v~~~t~~~~~~~~~~~~~~~-~~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~G 230 (693)
T KOG0730|consen 155 PSP--QVTPDTELSYLGEPAKREEEE-LPEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTG 230 (693)
T ss_pred cch--hcCccchhhhcCCCccccccc-ccccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCC
Confidence 776 778899988887777654444 47778 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCeEEEEechhhhhhhhchhHHHHHHHHHHHHhcC-CcEEEecccccccCCCCCchhHHHHHHHHHHH
Q 003503 262 KTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA-PSIIFIDELDSIAPKREKTHGEVERRIVSQLL 340 (815)
Q Consensus 262 KTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~-p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll 340 (815)
||.+++++|++.++.++.++++++++++.|++++.+|..|+.+...+ |+++||||+|.+++++....+ +++|++.+|+
T Consensus 231 kt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-~e~Rv~sqll 309 (693)
T KOG0730|consen 231 KTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-VESRVVSQLL 309 (693)
T ss_pred hHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-HHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998 999999999999999877666 8899999999
Q ss_pred HhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhhHHHhhcCCCcHH
Q 003503 341 TLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGS 420 (815)
Q Consensus 341 ~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~ 420 (815)
++|+++.....++|+++||+|+.||+++|| |||+++++++.|+..+|.+|++.+++++++.+++++..++..+|||+|+
T Consensus 310 tL~dg~~~~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGa 388 (693)
T KOG0730|consen 310 TLLDGLKPDAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGA 388 (693)
T ss_pred HHHhhCcCcCcEEEEEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHH
Confidence 999999999999999999999999999999 9999999999999999999999999999998889999999999999999
Q ss_pred HHHHHHHHHHHHhHHhhcccccccccchhhhhhcccccccccccccccccCCCcccccccccCCcccccccccchhhhhh
Q 003503 421 DLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLDNVKREL 500 (815)
Q Consensus 421 dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~p~~~~~~~~~~~~~~~~~i~g~~~~k~~l 500 (815)
|+.++|++|++.+.++ ++++|..|+..+.|+++|+..++.|+++|+||||++++|+.|
T Consensus 389 DL~~l~~ea~~~~~r~----------------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~el 446 (693)
T KOG0730|consen 389 DLAALCREASLQATRR----------------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKREL 446 (693)
T ss_pred HHHHHHHHHHHHHhhh----------------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHH
Confidence 9999999999988765 456788899999999999999999999999999999999999
Q ss_pred hccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchhhhccCccHHHHHHHHHHHhhC
Q 003503 501 QETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQS 580 (815)
Q Consensus 501 ~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~~g~se~~i~~~F~~a~~~ 580 (815)
++.|.||+++++.|.++|+++++|||||||||||||++||++|++++.+|++|++++++++|+|++|++++++|++|++.
T Consensus 447 q~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~ 526 (693)
T KOG0730|consen 447 QQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQV 526 (693)
T ss_pred HHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCC
Q 003503 581 APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPD 660 (815)
Q Consensus 581 ~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~ 660 (815)
+|||+||||||+++..|+.+. +++.+||+++||+||||++..++|+||||||||+.||+|++||||||++||||+||
T Consensus 527 aP~IiFfDEiDsi~~~R~g~~---~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD 603 (693)
T KOG0730|consen 527 APCIIFFDEIDALAGSRGGSS---SGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPD 603 (693)
T ss_pred CCeEEehhhHHhHhhccCCCc---cchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCcc
Confidence 999999999999999997433 37899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccc
Q 003503 661 EASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIERERRKRENPEAMEEDEVDDVA 740 (815)
Q Consensus 661 ~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (815)
.+.|++||+.+++++++.+++|+..||+.|+|||||||.++|++|++.|+++.++. .
T Consensus 604 ~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a-----------------------~ 660 (693)
T KOG0730|consen 604 LEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEA-----------------------T 660 (693)
T ss_pred HHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhccc-----------------------c
Confidence 99999999999999999999999999999999999999999999999999998763 3
Q ss_pred cccHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 003503 741 EIKAVHFEESMKYARRSVSDADIRKYQLFAQT 772 (815)
Q Consensus 741 ~i~~~~f~~a~~~~~~svs~~~~~~y~~~~~~ 772 (815)
.|+.+||++|++..++|++.+++++|++|++.
T Consensus 661 ~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa~~ 692 (693)
T KOG0730|consen 661 EITWQHFEEALKAVRPSLTSELLEKYEDFAAR 692 (693)
T ss_pred cccHHHHHHHHHhhcccCCHHHHHHHHHHhhc
Confidence 79999999999999999999999999999864
No 2
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-113 Score=924.21 Aligned_cols=554 Identities=49% Similarity=0.859 Sum_probs=511.1
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhh
Q 003503 210 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKL 289 (815)
Q Consensus 210 ~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~ 289 (815)
..++|.+|||+++++.++.+++.. ++||+.|.++|+.|++|||||||||||||+||++||++++.+|+.|+++++++.+
T Consensus 185 snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 467999999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCC----CcEEEEEecCCCCCCC
Q 003503 290 AGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSR----AHVIVMGATNRPNSID 365 (815)
Q Consensus 290 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~----~~vivi~atn~~~~ld 365 (815)
.|+++++++.+|..|....|||+||||||++.++|...+.++++|++.||++.||++... ..|+|||+||+|+.+|
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslD 343 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLD 343 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccC
Confidence 999999999999999999999999999999999999999999999999999999998754 5799999999999999
Q ss_pred HHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhhHHHhhcCCCcHHHHHHHHHHHHHHhHHhhcccccc--
Q 003503 366 PALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDL-- 443 (815)
Q Consensus 366 ~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~-- 443 (815)
++|||.|||+++|.++.|+...|.+||+..++++.+..+.++..+|..|+||+|+||.+||.+|+..+++|..+...-
T Consensus 344 paLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~ 423 (802)
T KOG0733|consen 344 PALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSPL 423 (802)
T ss_pred HHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999886553220
Q ss_pred --------------cccc-----------------------------hhhhhhcccccccccccccccccCCCccccccc
Q 003503 444 --------------EDET-----------------------------IDAEVLNSMAVTNEHFQTALGTSNPSALRETVV 480 (815)
Q Consensus 444 --------------~~~~-----------------------------~~~~~~~~~~v~~~~~~~al~~~~p~~~~~~~~ 480 (815)
+.+. ...+....+.+..+||..|+..++|++.|+.+.
T Consensus 424 ~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~ 503 (802)
T KOG0733|consen 424 TKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGFA 503 (802)
T ss_pred ccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccce
Confidence 0000 001223356688999999999999999999999
Q ss_pred ccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchhh
Q 003503 481 EVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 560 (815)
Q Consensus 481 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~~ 560 (815)
.+|+++|+|||++++++.+|...|.||+++++.|+.+|+..+.|+||+||||||||+||||+|++.+.+||+|+|++|++
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlN 583 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLN 583 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCCC
Q 003503 561 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDII 640 (815)
Q Consensus 561 ~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~l 640 (815)
+||||||+.||.+|++||...||||||||+|+|+++|+... .....|++||||+||||++.+.+|+|||||||||.+
T Consensus 584 kYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiI 660 (802)
T KOG0733|consen 584 KYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDII 660 (802)
T ss_pred HHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccccccceEEEeecCCCccc
Confidence 99999999999999999999999999999999999997653 457899999999999999999999999999999999
Q ss_pred CccccCCCCCcceeeccCCCHHHHHHHHHHHhc--cCCCCCcccHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHHH
Q 003503 641 DPALLRPGRLDQLIYIPLPDEASRLQIFKACLR--KSPISPDVDLSALARYTH--GFSGADITEVCQRACKYAIRENIEK 716 (815)
Q Consensus 641 d~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~--~~~~~~~~~~~~la~~t~--g~sg~di~~l~~~a~~~a~~~~~~~ 716 (815)
|||+|||||||+.+|+++|+.++|..||+.+++ +.+++.|+|+++||..+. |||||||..+|++|...|+++.+..
T Consensus 661 DpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~ 740 (802)
T KOG0733|consen 661 DPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFE 740 (802)
T ss_pred chhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999 889999999999999886 9999999999999999999988653
Q ss_pred HHHHHHhhcCCCccccccccc---ccccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhcccCC
Q 003503 717 DIERERRKRENPEAMEEDEVD---DVAEIKAVHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGF 779 (815)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~f~~a~~~~~~svs~~~~~~y~~~~~~~~~~~~~ 779 (815)
.. ++.++.. ....++..||++|++.++||+++.+-++|+..+++++-+.+.
T Consensus 741 ~~------------~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~L~~~~ 794 (802)
T KOG0733|consen 741 ID------------SSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRSLSTAT 794 (802)
T ss_pred cc------------ccCcccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhcccccC
Confidence 21 1111111 123588999999999999999999999999999998754443
No 3
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.6e-98 Score=898.94 Aligned_cols=722 Identities=51% Similarity=0.849 Sum_probs=635.5
Q ss_pred eEEEccccC-C-CccEEEeCHHHHHhcCCCCCCEEEEe-cCCCceEEEEEEe--cCCCCCCeEEecHHhhhhcccccCCe
Q 003503 37 RLVVDEAIN-D-DNSVITMHPNTMEKLQFFRGDTVLVK-GKKRKDTVCVVLS--DELCEASKVRVNKVVRSNLRVRLGDV 111 (815)
Q Consensus 37 ~~~v~~~~~-~-~~~~v~~~~~~~~~l~~~~g~~v~i~-~~~~~~~~~~~~~--~~~~~~~~i~~~~~~r~~~~~~~g~~ 111 (815)
.++|.++.+ + +++.++|+|+.|.+||+..||+|.|. |++ .+++.+|+ ..+++.+.|++++.+|.|+|+++||.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (733)
T TIGR01243 3 ELRVAEAYPRDVGRGIVRIDRQTAARLGVEPGDFVEIEKGDR--SVVAIVWPLRPDDEGRGIIRMDGYLRANAGVTIGDT 80 (733)
T ss_pred EEEehhhhccCCCCCeEeeCHHHHHhcCCCCCCEEEEecCCC--ceeEEEEecCccccCCCEEeecHHHHhhcCCCCCCe
Confidence 356777754 4 89999999999999999999999999 543 46778886 35778999999999999999999999
Q ss_pred eEEEecCCCCCCcEEEecccCCcccCcchhhHHHHhhHhhhhcCcccccCcEEEEecCceeEEEEEEEecCCceeeeCCC
Q 003503 112 VSVHPCPDVKYGRRVHILPIDDTIEGVTGNLFDAYLKPYFMESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPD 191 (815)
Q Consensus 112 v~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~p~~~~~~~~~ 191 (815)
|+|+++. ++.+..|.+.|..... .+..+..+++.++. .+++..|+.+.+......+.|+|+++.|.+++.++..
T Consensus 81 ~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~v~~~~p~~~~~~~~~ 154 (733)
T TIGR01243 81 VTVERAE-VKEAKKVVLAPTQPIR---FGRDFVDYVKEFLL--GKPISKGETVIVPVLEGALPFVVVSTQPAGFVYVTEA 154 (733)
T ss_pred EEEeecC-CCccceEeeccccccc---cccchHHHHHHHHc--CCCCCCCCEEEecccCcceeEEEEecCCCCcEEECCC
Confidence 9999964 7888999988864321 12334556777775 4789999998876444567899999999999999999
Q ss_pred ceEEecCCCCccccccccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHH
Q 003503 192 TEIFCEGEPVKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 271 (815)
Q Consensus 192 t~i~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~ 271 (815)
|.+.+...+.........+.++|++|||++++++.|++++.+|+.+|++++++++.+++++||+||||||||+|++++|+
T Consensus 155 t~~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 155 TEVEIREKPVREEIERKVPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred ceEEecCCccccccccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH
Confidence 99877654433222224578999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCc
Q 003503 272 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH 351 (815)
Q Consensus 272 ~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~ 351 (815)
+++.+++.+++.++.+.+.|+.+..++.+|+.+....|++|||||+|.++++++...++.+.+++.+|+++|+++..+..
T Consensus 235 ~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 235 EAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred HhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence 99999999999999999999999999999999999999999999999999988777778889999999999999988889
Q ss_pred EEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhhHHHhhcCCCcHHHHHHHHHHHHH
Q 003503 352 VIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAAL 431 (815)
Q Consensus 352 vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~ 431 (815)
++||++||+++.+|+++++++||++.++++.|+.++|.+||+.+.+.+.+..+.++..++..++||+++|+..++++|++
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~ 394 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAM 394 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988888899999999999999999999999999
Q ss_pred HhHHhhcc--cccccccchhhhhhcccccccccccccccccCCCcccccccccCCcccccccccchhhhhhhccccCCCC
Q 003503 432 QCIREKMD--VIDLEDETIDAEVLNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLDNVKRELQETVQYPVE 509 (815)
Q Consensus 432 ~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~p~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~ 509 (815)
.++++... ........++........++.++|..++..+.|+.+++...+.|.++|++|+|++.+|+.|.+.+.||+.
T Consensus 395 ~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~ 474 (733)
T TIGR01243 395 AALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLK 474 (733)
T ss_pred HHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHHHHHHHHHhhhh
Confidence 88877543 2222222333334455678889999999999999999988899999999999999999999999999999
Q ss_pred ChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchhhhccCccHHHHHHHHHHHhhCCCeEEEEec
Q 003503 510 HPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDE 589 (815)
Q Consensus 510 ~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~~g~se~~i~~~F~~a~~~~p~ilfiDE 589 (815)
+++.+.++++.+++|+|||||||||||++|+++|++++.+|+.++++++.++|+|+++++++.+|+.|+...||||||||
T Consensus 475 ~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDE 554 (733)
T TIGR01243 475 HPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDE 554 (733)
T ss_pred CHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHH
Q 003503 590 LDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFK 669 (815)
Q Consensus 590 id~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~ 669 (815)
||++++.|+.... ....++++++||++||++...++++||+|||+|+.||+|++||||||++|+||+||.++|.+||+
T Consensus 555 id~l~~~r~~~~~--~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~ 632 (733)
T TIGR01243 555 IDAIAPARGARFD--TSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFK 632 (733)
T ss_pred hhhhhccCCCCCC--ccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHH
Confidence 9999998865322 34678999999999999988889999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccccHHHHHH
Q 003503 670 ACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIERERRKRENPEAMEEDEVDDVAEIKAVHFEE 749 (815)
Q Consensus 670 ~~l~~~~~~~~~~~~~la~~t~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~ 749 (815)
.++++.++..++++..||+.|+||||+||.++|++|++.|+++.+........ .. ...+......|+++||.+
T Consensus 633 ~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~------~~-~~~~~~~~~~i~~~~f~~ 705 (733)
T TIGR01243 633 IHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKL------EV-GEEEFLKDLKVEMRHFLE 705 (733)
T ss_pred HHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhh------hc-ccccccccCcccHHHHHH
Confidence 99999999999999999999999999999999999999999987653210000 00 000011234799999999
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHHhc
Q 003503 750 SMKYARRSVSDADIRKYQLFAQTLQQ 775 (815)
Q Consensus 750 a~~~~~~svs~~~~~~y~~~~~~~~~ 775 (815)
|++.++||+++++++.|++|.++|+.
T Consensus 706 al~~~~ps~~~~~~~~~~~~~~~~~~ 731 (733)
T TIGR01243 706 ALKKVKPSVSKEDMLRYERLAKELKR 731 (733)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999964
No 4
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.6e-85 Score=718.44 Aligned_cols=614 Identities=36% Similarity=0.600 Sum_probs=491.6
Q ss_pred hhHHHHhhHhhhhcCcccccCcEEEEecC------------------ceeEEEEEEEecCC---ceeeeCCCceEEecCC
Q 003503 141 NLFDAYLKPYFMESYRPVRKGDLFLVRGG------------------MRSVEFKVIETDPG---EYCVVAPDTEIFCEGE 199 (815)
Q Consensus 141 ~~~~~~l~~~~~~~~~~v~~g~~~~~~~~------------------~~~~~f~v~~~~p~---~~~~~~~~t~i~~~~~ 199 (815)
+..+..++.||+ ..|.++.||+|++... ...++|+|++.+|. .+++..++|.++..+.
T Consensus 304 ~~~~~~l~~~f~-t~ril~~gdvf~i~~~~~~~~~~~~~~l~l~~~~d~~v~~~v~~~ep~~~~~~~i~~~~T~lv~~~~ 382 (953)
T KOG0736|consen 304 GNIDVVLKKHFK-TPRILQSGDVFCIPINSQMANLNGYPELPLWRETDFLVYKKVIEAEPGNESAYIIDTNHTSLVLVGA 382 (953)
T ss_pred hHHHHHHHHHhC-cceeeecCCEEEEeehhhhcccccchhhHhhhhccceeEEEEeecCCCccceEEEcCCCceEEEccc
Confidence 456668899997 5788999999987321 23678999999985 3566677888876654
Q ss_pred CCccc--ccccc-CCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe
Q 003503 200 PVKRE--DEERL-NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF 276 (815)
Q Consensus 200 ~~~~~--~~~~~-~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~ 276 (815)
...+. -.... .-..+-..-+.+..+..+..++.- -..| ...++.-...+||+|+||||||++++++|.+++.+
T Consensus 383 ~ss~~~~lps~~~~l~n~~~~~~~~~~~~~l~~vl~p-~~~~---s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h 458 (953)
T KOG0736|consen 383 TSSRVPLLPSSLSTLWNSLSPPGLEAKVLELVAVLSP-QKQP---SGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLH 458 (953)
T ss_pred cccCCcCCChhhHHHhccCCCccchHHHHHHHHHhCc-ccCc---chhccccceEEEEeCCCCCChHHHHHHHHHHhCCc
Confidence 43220 00000 001122233444444433333321 1111 11223345579999999999999999999999999
Q ss_pred EEEEechhhhhhhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhh---cccCCCcEE
Q 003503 277 FFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMD---GLKSRAHVI 353 (815)
Q Consensus 277 ~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld---~~~~~~~vi 353 (815)
++.++|.++.+...+..+.++..+|+.++...|+|||+-++|.+.-++.. ..+.++.+.+..++. .......++
T Consensus 459 ~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg---ged~rl~~~i~~~ls~e~~~~~~~~~i 535 (953)
T KOG0736|consen 459 LLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG---GEDARLLKVIRHLLSNEDFKFSCPPVI 535 (953)
T ss_pred eEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC---chhHHHHHHHHHHHhcccccCCCCceE
Confidence 99999999999999999999999999999999999999999998855433 233445444444433 333667899
Q ss_pred EEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhhHHHhhcCCCcHHHHHHHHHHHHHHh
Q 003503 354 VMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQC 433 (815)
Q Consensus 354 vi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~ 433 (815)
|+++++..+.+++.+++ .|.++|.++.|++++|.+||+.+.....+..++.++.++.++.||+.+++.++.......+
T Consensus 536 vv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~ 613 (953)
T KOG0736|consen 536 VVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAA 613 (953)
T ss_pred EEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHH
Confidence 99999999999999998 5677999999999999999999999999999999999999999999999999987663333
Q ss_pred HHhhcccc---cccccchhhhhhcccccccccccccccccCCCcccc-cccccCCcccccccccchhhhhhhccccCCCC
Q 003503 434 IREKMDVI---DLEDETIDAEVLNSMAVTNEHFQTALGTSNPSALRE-TVVEVPNVSWEDIGGLDNVKRELQETVQYPVE 509 (815)
Q Consensus 434 ~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~al~~~~p~~~~~-~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~ 509 (815)
..+..... .+.+..-.........++++||.+++.+.+...... ...++|+++|+||||++++|..+.+.|..|++
T Consensus 614 ~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~ 693 (953)
T KOG0736|consen 614 KTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLK 693 (953)
T ss_pred HHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCccchhcccCHHHHHHHHHHHhcCccc
Confidence 22211100 000001111123456788999999988665433222 23468999999999999999999999999999
Q ss_pred ChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchhhhccCccHHHHHHHHHHHhhCCCeEEEEec
Q 003503 510 HPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDE 589 (815)
Q Consensus 510 ~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~~g~se~~i~~~F~~a~~~~p~ilfiDE 589 (815)
|+++|.. |+++..|||||||||||||.+|||+|.++..+|++|+||||++||+|+||+|+|++|++||..+||||||||
T Consensus 694 hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDE 772 (953)
T KOG0736|consen 694 HPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDE 772 (953)
T ss_pred Chhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEecc
Confidence 9999987 888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccCCCCCCCCchHHHHHHHHHhccccCC--CCCcEEEEEecCCCCCCCccccCCCCCcceeeccCC-CHHHHHH
Q 003503 590 LDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN--AKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP-DEASRLQ 666 (815)
Q Consensus 590 id~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~--~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p-~~~~r~~ 666 (815)
+|+++++||.+ ++++++.+||++|||.||||+. ..+.|+|||||||||.||||||||||||+.+|++++ |.+.+..
T Consensus 773 LDSlAP~RG~s-GDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~ 851 (953)
T KOG0736|consen 773 LDSLAPNRGRS-GDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLR 851 (953)
T ss_pred ccccCccCCCC-CCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHH
Confidence 99999999986 4568899999999999999997 567899999999999999999999999999999987 5677899
Q ss_pred HHHHHhccCCCCCcccHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccccHH
Q 003503 667 IFKACLRKSPISPDVDLSALARYT-HGFSGADITEVCQRACKYAIRENIEKDIERERRKRENPEAMEEDEVDDVAEIKAV 745 (815)
Q Consensus 667 Il~~~l~~~~~~~~~~~~~la~~t-~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 745 (815)
|++...+++.++.++|+.++|+.. ..|||||+..+|.+|.+.|++|.+....... . .+++.......|+++
T Consensus 852 vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~-------~-~~~e~~~~~v~V~~e 923 (953)
T KOG0736|consen 852 VLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGT-------I-SEEEQESSSVRVTME 923 (953)
T ss_pred HHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhcc-------c-cccccCCceEEEEHH
Confidence 999999999999999999999875 6899999999999999999999876532100 0 001112335689999
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHHh
Q 003503 746 HFEESMKYARRSVSDADIRKYQLFAQTLQ 774 (815)
Q Consensus 746 ~f~~a~~~~~~svs~~~~~~y~~~~~~~~ 774 (815)
||.+++++..||+|+.++.+|+..+.+|+
T Consensus 924 Dflks~~~l~PSvS~~EL~~ye~vr~~fs 952 (953)
T KOG0736|consen 924 DFLKSAKRLQPSVSEQELLRYEMVRAQFS 952 (953)
T ss_pred HHHHHHHhcCCcccHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999985
No 5
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-72 Score=614.26 Aligned_cols=499 Identities=37% Similarity=0.567 Sum_probs=425.6
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhC----CeEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCcEEEecccccccC
Q 003503 247 KPPKGILLYGPPGSGKTLIARAVANETG----AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAP 322 (815)
Q Consensus 247 ~~~~~VLL~GppGtGKTtLar~la~~l~----~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~ 322 (815)
..+.+|||+||+|||||.|+++++.+.. +++..++|+.+-........+.++.+|..+.++.|+|+++|++|.|..
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~ 508 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLAS 508 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhc
Confidence 3457899999999999999999999874 457889999887777777788899999999999999999999999987
Q ss_pred CCCC---chhHHHHHHHHHHHHhhhcccC-CCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcC
Q 003503 323 KREK---THGEVERRIVSQLLTLMDGLKS-RAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKN 398 (815)
Q Consensus 323 ~~~~---~~~~~~~~v~~~Ll~~ld~~~~-~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~ 398 (815)
..+. ..+....+....|...+..+.. +..+.+|++.+....+++.|-.+++|+..+.++.|+..+|.+||+..+.+
T Consensus 509 ~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~ 588 (952)
T KOG0735|consen 509 ASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSK 588 (952)
T ss_pred cCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHh
Confidence 3222 2233445555545454444433 44578999999999999999999999999999999999999999987655
Q ss_pred Cc-cccchhhhHHHhhcCCCcHHHHHHHHHHHHHHhHHhhcccccccccchhhhhhcccccccccccccccccCCCcccc
Q 003503 399 MK-LAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGTSNPSALRE 477 (815)
Q Consensus 399 ~~-l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~p~~~~~ 477 (815)
.. .....+++.++..|+||...|+..++.+|...++...... ....++.++|.++|+.+.|.++|.
T Consensus 589 ~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~-------------~~klltke~f~ksL~~F~P~aLR~ 655 (952)
T KOG0735|consen 589 NLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISN-------------GPKLLTKELFEKSLKDFVPLALRG 655 (952)
T ss_pred hhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhcc-------------CcccchHHHHHHHHHhcChHHhhh
Confidence 43 2223456669999999999999999999988777433211 122588899999999999999998
Q ss_pred ccccc-CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEecc
Q 003503 478 TVVEV-PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 556 (815)
Q Consensus 478 ~~~~~-~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~ 556 (815)
..... .++.|+||||+.++|+.|.+.+.||.+++.+|...+++.+.|+|||||||||||+||.++|..++..||+|+||
T Consensus 656 ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGP 735 (952)
T KOG0735|consen 656 IKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGP 735 (952)
T ss_pred ccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCH
Confidence 76544 45999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCC
Q 003503 557 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNR 636 (815)
Q Consensus 557 ~l~~~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~ 636 (815)
+++++|+|.||+++|.+|.+|+...|||+||||+|+++++||.+ ..+.++||+||||++|||.++.++|+|+|||.|
T Consensus 736 ElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhD---sTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsR 812 (952)
T KOG0735|consen 736 ELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHD---STGVTDRVVNQLLTELDGAEGLDGVYILAATSR 812 (952)
T ss_pred HHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCC---CCCchHHHHHHHHHhhccccccceEEEEEecCC
Confidence 99999999999999999999999999999999999999999864 467899999999999999999999999999999
Q ss_pred CCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 003503 637 PDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEK 716 (815)
Q Consensus 637 ~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~l~~~a~~~a~~~~~~~ 716 (815)
||+|||||+||||||+.+|+|+|+..+|.+|++...+...++.++|++.+|..|+|||||||+.++.+|.+.|+++.+.+
T Consensus 813 pdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~~ 892 (952)
T KOG0735|consen 813 PDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILKR 892 (952)
T ss_pred ccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred HHHHHHhhcCCCcccccccccccccccHHHHHHHH--hhccCCCCHHHHHHHHHHHHHHhccc
Q 003503 717 DIERERRKRENPEAMEEDEVDDVAEIKAVHFEESM--KYARRSVSDADIRKYQLFAQTLQQSR 777 (815)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~--~~~~~svs~~~~~~y~~~~~~~~~~~ 777 (815)
... .+..+.++...+.... ...+||.+.-+-+.+.+..-+|..++
T Consensus 893 ~~~----------------~~~~p~~~~~~~~si~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 939 (952)
T KOG0735|consen 893 EDE----------------EGVVPSIDDASLESIFSDSKRKPSRSALDNRKGQDVYSQFLSDE 939 (952)
T ss_pred cCc----------------cccCCccchhhhhhhhhccCCCccccccchhhhhhHHHhhcCcc
Confidence 310 0112223333333333 36678888888888887777776544
No 6
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-66 Score=598.25 Aligned_cols=489 Identities=56% Similarity=0.912 Sum_probs=451.0
Q ss_pred cccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCcEE
Q 003503 233 LPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSII 312 (815)
Q Consensus 233 ~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il 312 (815)
+|+.+++.++.+++.++.+++++||||+|||+++++++.. +..+..++++++.+++.++.+..++.+|..+....|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 5788999999999999999999999999999999999999 666688999999999999999999999999999999999
Q ss_pred EecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHH
Q 003503 313 FIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEIL 392 (815)
Q Consensus 313 ~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il 392 (815)
++||++.+.+.+.........+++.+++..++++. +..+++++.++++..+++++++++||+.++.+..|+...+.+|+
T Consensus 81 ~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~ 159 (494)
T COG0464 81 FIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEIL 159 (494)
T ss_pred eechhhhcccCccccccchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHH
Confidence 99999999999887667788999999999999999 55588889999999999999999999999999999999999999
Q ss_pred HHHhcCCccccchhhhHHHhhcCCCcHHHHHHHHHHHHHHhHHhhcccccccccchhhhhhcccccccccccccccccCC
Q 003503 393 RIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGTSNP 472 (815)
Q Consensus 393 ~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~p 472 (815)
..+...+....+.+...++..++||.++++..+++++.+...++.. ........++.+++..++..+.|
T Consensus 160 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~-----------~~~~~~~~~~~~~~~~~l~~~~~ 228 (494)
T COG0464 160 QIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI-----------DLVGEYIGVTEDDFEEALKKVLP 228 (494)
T ss_pred HHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh-----------ccCcccccccHHHHHHHHHhcCc
Confidence 9999999888888999999999999999999999999888877652 01123455778888889988888
Q ss_pred CcccccccccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEE
Q 003503 473 SALRETVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFIS 552 (815)
Q Consensus 473 ~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~ 552 (815)
+ ++.....+.++|+++||++.+|+.+++.+.+++.+++.|.+.++.+++|+|||||||||||+||+++|.+++.+|+.
T Consensus 229 ~--~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~ 306 (494)
T COG0464 229 S--RGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFIS 306 (494)
T ss_pred c--cccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEE
Confidence 7 67777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccchhhhccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEE
Q 003503 553 VKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIG 632 (815)
Q Consensus 553 v~~~~l~~~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~ 632 (815)
+++++++++|+|+++++|+.+|..|++..||||||||+|+++..|+.+.. +...|++++||++|++++...+|+||+
T Consensus 307 v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~---~~~~r~~~~lL~~~d~~e~~~~v~vi~ 383 (494)
T COG0464 307 VKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSED---GSGRRVVGQLLTELDGIEKAEGVLVIA 383 (494)
T ss_pred eeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCc---hHHHHHHHHHHHHhcCCCccCceEEEe
Confidence 99999999999999999999999999999999999999999999975432 234799999999999999999999999
Q ss_pred ecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCC--CCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 003503 633 ATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSP--ISPDVDLSALARYTHGFSGADITEVCQRACKYAI 710 (815)
Q Consensus 633 aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~--~~~~~~~~~la~~t~g~sg~di~~l~~~a~~~a~ 710 (815)
|||+||.+|+|++||||||++++||+||.++|.+||+.+++... +..++++..+++.|+||||+||..+|++|++.++
T Consensus 384 aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~ 463 (494)
T COG0464 384 ATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEAL 463 (494)
T ss_pred cCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998544 4688999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCcccccccccccccccHHHHHHHHhhccCCCCHHHHHHHHHH
Q 003503 711 RENIEKDIERERRKRENPEAMEEDEVDDVAEIKAVHFEESMKYARRSVSDADIRKYQLF 769 (815)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~~~~~~y~~~ 769 (815)
++.. ...++.+||.+|++.++||++ |++|
T Consensus 464 ~~~~------------------------~~~~~~~~~~~a~~~~~p~~~------~~~~ 492 (494)
T COG0464 464 REAR------------------------RREVTLDDFLDALKKIKPSVT------YEEW 492 (494)
T ss_pred HHhc------------------------cCCccHHHHHHHHHhcCCCCC------hhhc
Confidence 8764 237999999999999999999 7777
No 7
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-58 Score=491.08 Aligned_cols=601 Identities=28% Similarity=0.440 Sum_probs=446.5
Q ss_pred EEEccccCC---CccEEEeCHHHHHhcCCCCCCEEEEecCCCceEEEEEEecCCCCCCeEEecHHhhhhcccccCCeeEE
Q 003503 38 LVVDEAIND---DNSVITMHPNTMEKLQFFRGDTVLVKGKKRKDTVCVVLSDELCEASKVRVNKVVRSNLRVRLGDVVSV 114 (815)
Q Consensus 38 ~~v~~~~~~---~~~~v~~~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~g~~v~v 114 (815)
+.|..+... -.+.++++|...++-+ +..+... ..++.......+++|.|.++..+|+|+++++||.|.|
T Consensus 11 ~~v~k~ps~e~altn~a~v~~~DF~~~~-----~~~vd~~---~~~Fs~~~~~~i~~g~i~fs~~qR~wa~~Sl~qev~V 82 (744)
T KOG0741|consen 11 FQVTKCPSNELALTNCAYVSPSDFRQFQ-----VIIVDNF---HYVFSTEFTPSIPPGNIGFSLPQRKWAGWSLGQEVEV 82 (744)
T ss_pred eeeecCCchhhhccCcceeCccccccce-----eeEEeee---eEEEEeeccCCCCCceeccchhhhhhhhcccCceeEE
Confidence 455544332 3556788887775432 2223221 3567777778899999999999999999999999999
Q ss_pred EecCCCCCCcE---EEec----ccC-CcccCcchh-hHHHHhhHhhhhcCcccccCcEEEEecCc-eeEEEEEEEec---
Q 003503 115 HPCPDVKYGRR---VHIL----PID-DTIEGVTGN-LFDAYLKPYFMESYRPVRKGDLFLVRGGM-RSVEFKVIETD--- 181 (815)
Q Consensus 115 ~~~~~~~~~~~---v~~~----~~~-~~~~~~~~~-~~~~~l~~~~~~~~~~v~~g~~~~~~~~~-~~~~f~v~~~~--- 181 (815)
.|+........ +++. ... .+...++.+ ....+...|- ..++.+|+.+.+...+ ..+.++|.+++
T Consensus 83 ~~~~~~~~~~~l~~m~le~dF~~k~~~~sep~Dad~ma~qF~~~y~---~q~fsvgQ~~~f~f~~~~~l~l~v~~ie~~D 159 (744)
T KOG0741|consen 83 KPFTFDGSCDYLGSMTLEIDFLNKKNTTSEPFDADEMAKQFKRQYN---SQAFSVGQQLVFEFNGNKLLGLKVKDIEAFD 159 (744)
T ss_pred EecccCcccccceeEEEEehhhhcCCCCCCCCCHHHHHHHHHHHhc---CcccCCccEEEEEecCceEeeeEEEEEeeec
Confidence 98743222122 2221 111 112223333 3333444443 3568899987765443 45667776653
Q ss_pred C--------------CceeeeCCCceEEecCCCCc----------ccccccc--CCCCcc--cccChHHHHHHH-HHHHH
Q 003503 182 P--------------GEYCVVAPDTEIFCEGEPVK----------REDEERL--NEVGYD--DVGGVRKQMAQI-RELVE 232 (815)
Q Consensus 182 p--------------~~~~~~~~~t~i~~~~~~~~----------~~~~~~~--~~~~~~--~i~G~~~~~~~i-~~~v~ 232 (815)
| -.++++..+|.|.+...... +.....+ ++..|+ .|||++++...| |++..
T Consensus 160 ~~~~~~~~a~~~~~~~~~G~l~~nT~i~F~k~~~s~lnL~~~~~~k~~~n~ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFA 239 (744)
T KOG0741|consen 160 PGISEGESAVTKRQKIERGLLLGNTQIVFEKAENSSLNLIGKSKTKPASNSIINPDFNFESMGIGGLDKEFSDIFRRAFA 239 (744)
T ss_pred cccccCCcccccccceeeeEeecCcEEEEEeccCcceEeeccccccchhccccCCCCChhhcccccchHHHHHHHHHHHH
Confidence 3 13688889998855322211 1111111 233344 389999999988 88888
Q ss_pred cccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-EEEEechhhhhhhhchhHHHHHHHHHHHHhc----
Q 003503 233 LPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-FFLINGPEIMSKLAGESESNLRKAFEEAEKN---- 307 (815)
Q Consensus 233 ~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~-~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~---- 307 (815)
.....|++.+++|+.+-+|||||||||||||.+||.|...+++. -..|||++++++|+|++++++|.+|.+|+..
T Consensus 240 sRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~ 319 (744)
T KOG0741|consen 240 SRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRL 319 (744)
T ss_pred hhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhh
Confidence 88999999999999999999999999999999999999999865 5789999999999999999999999999763
Q ss_pred ----CCcEEEecccccccCCCCCchh--HHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcC
Q 003503 308 ----APSIIFIDELDSIAPKREKTHG--EVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIG 381 (815)
Q Consensus 308 ----~p~il~iDEid~l~~~~~~~~~--~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~ 381 (815)
.-.||++||||++|..|++..+ .+...+++||++.|||..+-.+++|||.||+.+.||+||.|||||+.++++.
T Consensus 320 g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIs 399 (744)
T KOG0741|consen 320 GANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEIS 399 (744)
T ss_pred CccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEe
Confidence 3369999999999999987543 5788999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCc----cccchhhhHHHhhcCCCcHHHHHHHHHHHHHHhHHhhcccccccccchhhhhhcccc
Q 003503 382 VPDEVGRLEILRIHTKNMK----LAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMA 457 (815)
Q Consensus 382 ~p~~~~R~~il~~~~~~~~----l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (815)
.||+..|++||++|+++|. +..++|+.++|.+|.+|+|++|+.+++.|...++.+....- .....+......+.
T Consensus 400 LPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~--~~~~~~~~~~e~lk 477 (744)
T KOG0741|consen 400 LPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAG--GKVEVDPVAIENLK 477 (744)
T ss_pred CCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccC--cceecCchhhhhee
Confidence 9999999999999998874 67899999999999999999999999999888887765432 12344555667889
Q ss_pred cccccccccccccCCCcccc-----cccccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCC
Q 003503 458 VTNEHFQTALGTSNPSALRE-----TVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPG 532 (815)
Q Consensus 458 v~~~~~~~al~~~~p~~~~~-----~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppG 532 (815)
+++.||..||..+.|+.-.. ..+...-+.|..-. .+.+ ..........+.....+-.++||+||||
T Consensus 478 V~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~v-----~~il----~~G~llv~qvk~s~~s~lvSvLl~Gp~~ 548 (744)
T KOG0741|consen 478 VTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPPV-----TRIL----DDGKLLVQQVKNSERSPLVSVLLEGPPG 548 (744)
T ss_pred ecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeecccH-----HHHH----hhHHHHHHHhhccccCcceEEEEecCCC
Confidence 99999999999998875321 11122234453211 1111 1000111122222345556799999999
Q ss_pred CChhHHHHHHHHHhCCcEEEEeccchhhhccCccH----HHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchH
Q 003503 533 CGKTLLAKAIANECQANFISVKGPELLTMWFGESE----ANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAA 608 (815)
Q Consensus 533 tGKT~lakala~~~~~~~i~v~~~~l~~~~~g~se----~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~ 608 (815)
+|||+||..+|..+.+||+.+-.++-+ +|-+| ..+..+|+.|+++.-+||++|+|+.|+..-.- ...+.
T Consensus 549 sGKTaLAA~iA~~S~FPFvKiiSpe~m---iG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpI----GPRfS 621 (744)
T KOG0741|consen 549 SGKTALAAKIALSSDFPFVKIISPEDM---IGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPI----GPRFS 621 (744)
T ss_pred CChHHHHHHHHhhcCCCeEEEeChHHc---cCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccccc----Cchhh
Confidence 999999999999999999998777643 44444 36899999999999999999999999876422 23567
Q ss_pred HHHHHHHHhccccCCCC-CcEEEEEecCCCCCCCc-cccCCCCCcceeeccCCCH-HHHHHHHH
Q 003503 609 DRVLNQLLTEMDGMNAK-KTVFIIGATNRPDIIDP-ALLRPGRLDQLIYIPLPDE-ASRLQIFK 669 (815)
Q Consensus 609 ~~vl~~lL~~ld~~~~~-~~v~vi~aTn~~~~ld~-allr~gRf~~~i~~~~p~~-~~r~~Il~ 669 (815)
+.+++.|+..+...++. ++++|++||.+.+.|.. .++. .|+..+++|..+. ++..++++
T Consensus 622 N~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 622 NLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred HHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHH
Confidence 77888888888877554 57999999999888765 4455 8999999997654 44455444
No 8
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-59 Score=477.57 Aligned_cols=251 Identities=48% Similarity=0.819 Sum_probs=242.0
Q ss_pred cccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchh
Q 003503 480 VEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 559 (815)
Q Consensus 480 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~ 559 (815)
.+.|+++|+||||+++..++|++.++.|+.+|++|..+|+.||+|+|||||||||||+||||+|+..++.||.|.+++|.
T Consensus 143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElV 222 (406)
T COG1222 143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELV 222 (406)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCC
Q 003503 560 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDI 639 (815)
Q Consensus 560 ~~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ 639 (815)
.+|+|+..+.+|++|+.|+..+||||||||||+++.+|-.++.+......|.+-+||++|||+...++|=||+||||++.
T Consensus 223 qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~ 302 (406)
T COG1222 223 QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDI 302 (406)
T ss_pred HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccc
Confidence 99999999999999999999999999999999999999877666677889999999999999999999999999999999
Q ss_pred CCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003503 640 IDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIE 719 (815)
Q Consensus 640 ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~l~~~a~~~a~~~~~~~~~~ 719 (815)
||||||||||||+.|+||+||.+.|.+||+.|.+++.+..++|++.||+.++|+|||||+++|.+|.+.|+++.
T Consensus 303 LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~------ 376 (406)
T COG1222 303 LDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRER------ 376 (406)
T ss_pred cChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred HHHhhcCCCcccccccccccccccHHHHHHHHhhcc
Q 003503 720 RERRKRENPEAMEEDEVDDVAEIKAVHFEESMKYAR 755 (815)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~ 755 (815)
...||++||.+|..++-
T Consensus 377 -------------------R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 377 -------------------RDEVTMEDFLKAVEKVV 393 (406)
T ss_pred -------------------cCeecHHHHHHHHHHHH
Confidence 24799999999998873
No 9
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-54 Score=443.88 Aligned_cols=285 Identities=43% Similarity=0.694 Sum_probs=257.9
Q ss_pred cccccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccc
Q 003503 478 TVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 557 (815)
Q Consensus 478 ~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~ 557 (815)
.+...|+++|+||.|+.+.|+-|++.+..|+..|+.|+. .++|.+|+|++||||||||+||||+|.+|+-.|+.|+.+.
T Consensus 202 Il~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsst 280 (491)
T KOG0738|consen 202 ILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSST 280 (491)
T ss_pred HhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhh
Confidence 445678999999999999999999999999999999987 5678899999999999999999999999999999999999
Q ss_pred hhhhccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCC----CCcEEEEEe
Q 003503 558 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNA----KKTVFIIGA 633 (815)
Q Consensus 558 l~~~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~----~~~v~vi~a 633 (815)
+.++|-|+||+.||-+|+.|+..+|++|||||||+|+.+||.++ .+++.+|+.++||.+|||+.. .+.|+|+||
T Consensus 281 ltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~--EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAA 358 (491)
T KOG0738|consen 281 LTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSS--EHEASRRVKSELLVQMDGVQGTLENSKVVMVLAA 358 (491)
T ss_pred hhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCcc--chhHHHHHHHHHHHHhhccccccccceeEEEEec
Confidence 99999999999999999999999999999999999999998763 357899999999999999864 245999999
Q ss_pred cCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Q 003503 634 TNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIREN 713 (815)
Q Consensus 634 Tn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~l~~~a~~~a~~~~ 713 (815)
||.||.||.||+| ||.++||+|+||.++|..+|+..++..+++++++++.||+.++||||+||.++|++|.+.++++.
T Consensus 359 TN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~ 436 (491)
T KOG0738|consen 359 TNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRK 436 (491)
T ss_pred cCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 99999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHhhcCCCcccccccccccccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhc
Q 003503 714 IEKDIERERRKRENPEAMEEDEVDDVAEIKAVHFEESMKYARRSVSDADIRKYQLFAQTLQQ 775 (815)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~~~~~~y~~~~~~~~~ 775 (815)
+.....+.... ...++. ..+++.+||+.|+++++||++..++.+|++|.+.|++
T Consensus 437 i~g~~~~ei~~------lakE~~--~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~efGS 490 (491)
T KOG0738|consen 437 IAGLTPREIRQ------LAKEEP--KMPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEFGS 490 (491)
T ss_pred HhcCCcHHhhh------hhhhcc--ccccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHhcC
Confidence 76432111110 111111 2479999999999999999999999999999999975
No 10
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-49 Score=408.24 Aligned_cols=247 Identities=51% Similarity=0.851 Sum_probs=230.4
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM 286 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~ 286 (815)
++.++++|+||||+++|+++|+|.+++|+.+|++|+.+||.||+|||||||||||||+|||++|++.++.|+.+.|++++
T Consensus 143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElV 222 (406)
T COG1222 143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELV 222 (406)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhH---HHHHHHHHHHHhhhcccCCCcEEEEEecCCCCC
Q 003503 287 SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGE---VERRIVSQLLTLMDGLKSRAHVIVMGATNRPNS 363 (815)
Q Consensus 287 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~---~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ 363 (815)
.+|.|+....+|.+|+-|+.+.||||||||||++..+|...... --+|..-+|++.|||+..+.+|-||++||+++.
T Consensus 223 qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~ 302 (406)
T COG1222 223 QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDI 302 (406)
T ss_pred HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccc
Confidence 99999999999999999999999999999999999887543222 224556778899999999999999999999999
Q ss_pred CCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhhHHHhhcCCCcHHHHHHHHHHHHHHhHHhhcccccc
Q 003503 364 IDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDL 443 (815)
Q Consensus 364 ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 443 (815)
|||||.||||||+.|++|.|+.+.|.+||++|+++|.+..++|++.++..+.|++|+|+.++|.+|++.+++...
T Consensus 303 LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R----- 377 (406)
T COG1222 303 LDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERR----- 377 (406)
T ss_pred cChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhcc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998763
Q ss_pred cccchhhhhhccccccccccccccccc
Q 003503 444 EDETIDAEVLNSMAVTNEHFQTALGTS 470 (815)
Q Consensus 444 ~~~~~~~~~~~~~~v~~~~~~~al~~~ 470 (815)
..++++||.+|...+
T Consensus 378 ------------~~Vt~~DF~~Av~KV 392 (406)
T COG1222 378 ------------DEVTMEDFLKAVEKV 392 (406)
T ss_pred ------------CeecHHHHHHHHHHH
Confidence 347888998887655
No 11
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-49 Score=396.43 Aligned_cols=293 Identities=34% Similarity=0.632 Sum_probs=259.3
Q ss_pred cccccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccc
Q 003503 478 TVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 557 (815)
Q Consensus 478 ~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~ 557 (815)
.+.+.|++.|+||.|++..|+.|++.+..|++.|.+|.. +..|.+|+||||||||||+.||+|+|.+.+..|++|+.++
T Consensus 123 Iv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSD 201 (439)
T KOG0739|consen 123 IVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 201 (439)
T ss_pred hhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHH
Confidence 456789999999999999999999999999999999987 6788999999999999999999999999999999999999
Q ss_pred hhhhccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCC-CCCcEEEEEecCC
Q 003503 558 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN-AKKTVFIIGATNR 636 (815)
Q Consensus 558 l~~~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-~~~~v~vi~aTn~ 636 (815)
|+++|.|++|+.++.+|+.||++.|+||||||||++++.|+.+ .++..+|+..+||.+|.|+. ..++|+|++|||-
T Consensus 202 LvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~en---EseasRRIKTEfLVQMqGVG~d~~gvLVLgATNi 278 (439)
T KOG0739|consen 202 LVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSEN---ESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNI 278 (439)
T ss_pred HHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCC---chHHHHHHHHHHHHhhhccccCCCceEEEecCCC
Confidence 9999999999999999999999999999999999999988653 35678999999999999985 5678999999999
Q ss_pred CCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCC-CCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 003503 637 PDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSP-ISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIE 715 (815)
Q Consensus 637 ~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~-~~~~~~~~~la~~t~g~sg~di~~l~~~a~~~a~~~~~~ 715 (815)
||.||.|+.| ||+++||+|+|+...|..+|+.++...+ .-.+.|+.+|+.+|+||||+||.-++++|.+..+++...
T Consensus 279 Pw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqs 356 (439)
T KOG0739|consen 279 PWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQS 356 (439)
T ss_pred chhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhh
Confidence 9999999999 9999999999999999999999998765 335679999999999999999999999999999999877
Q ss_pred HHHHHHHhhcCCCcc---------cccc------------cccccccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHh
Q 003503 716 KDIERERRKRENPEA---------MEED------------EVDDVAEIKAVHFEESMKYARRSVSDADIRKYQLFAQTLQ 774 (815)
Q Consensus 716 ~~~~~~~~~~~~~~~---------~~~~------------~~~~~~~i~~~~f~~a~~~~~~svs~~~~~~y~~~~~~~~ 774 (815)
+..........+... ..+. +.--.+.+|+.||..++...+|.|+..++.+.++|.+.|+
T Consensus 357 AthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~Dl~k~~~Ft~dFG 436 (439)
T KOG0739|consen 357 ATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDDLLKHEKFTEDFG 436 (439)
T ss_pred hhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhc
Confidence 766544333211110 0000 1112468999999999999999999999999999999998
Q ss_pred cc
Q 003503 775 QS 776 (815)
Q Consensus 775 ~~ 776 (815)
+.
T Consensus 437 qE 438 (439)
T KOG0739|consen 437 QE 438 (439)
T ss_pred cC
Confidence 74
No 12
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-48 Score=375.46 Aligned_cols=249 Identities=44% Similarity=0.752 Sum_probs=238.1
Q ss_pred ccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchhh
Q 003503 481 EVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 560 (815)
Q Consensus 481 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~~ 560 (815)
+.|++++.||||++-.|+++++.++.|+.+.++++++|+.|++|+|+|||||||||+|+|++|+.....||.|.|+++..
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCCC
Q 003503 561 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDII 640 (815)
Q Consensus 561 ~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~l 640 (815)
+|.|+..+.+|.+|..|+..+|+||||||||+++.+|=..+.+......|++-+||++|||+...-+|-||+||||.+.|
T Consensus 228 kylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtl 307 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTL 307 (408)
T ss_pred HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccccc
Confidence 99999999999999999999999999999999999996666666778889999999999999999999999999999999
Q ss_pred CccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003503 641 DPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIER 720 (815)
Q Consensus 641 d~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~l~~~a~~~a~~~~~~~~~~~ 720 (815)
||||+||||+|+.|+||+||..+++-+|..+..++.+++++|++.+..+.+..||+||..+|++|.+.|++++
T Consensus 308 dpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~n------- 380 (408)
T KOG0727|consen 308 DPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVREN------- 380 (408)
T ss_pred CHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred HHhhcCCCcccccccccccccccHHHHHHHHhhc
Q 003503 721 ERRKRENPEAMEEDEVDDVAEIKAVHFEESMKYA 754 (815)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~ 754 (815)
...+...||++|.+..
T Consensus 381 ------------------ryvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 381 ------------------RYVVLQKDFEKAYKTV 396 (408)
T ss_pred ------------------ceeeeHHHHHHHHHhh
Confidence 2368899999998775
No 13
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-47 Score=371.57 Aligned_cols=255 Identities=43% Similarity=0.741 Sum_probs=241.0
Q ss_pred ccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchhh
Q 003503 481 EVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 560 (815)
Q Consensus 481 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~~ 560 (815)
.+|+-.++-|||++...+++++.++.|.++|++|..+|+..|+|+|||||||||||.||+++|....+.||.|+++++..
T Consensus 140 KvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvq 219 (404)
T KOG0728|consen 140 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 219 (404)
T ss_pred hCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCCC
Q 003503 561 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDII 640 (815)
Q Consensus 561 ~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~l 640 (815)
+|+|+..+.+|++|-.|+..+|+|||.||||++...|..++.+......|.+-+||+++||++..+++-||+||||.|.|
T Consensus 220 k~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridil 299 (404)
T KOG0728|consen 220 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL 299 (404)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccc
Confidence 99999999999999999999999999999999999997766666677888899999999999999999999999999999
Q ss_pred CccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003503 641 DPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIER 720 (815)
Q Consensus 641 d~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~l~~~a~~~a~~~~~~~~~~~ 720 (815)
||||+||||+|+.|+||+|+.+.|.+|++.+.+++++...+++..+|+...|.||++++.+|.+|.++|+++.
T Consensus 300 d~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer------- 372 (404)
T KOG0728|consen 300 DPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER------- 372 (404)
T ss_pred cHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred HHhhcCCCcccccccccccccccHHHHHHHHhhccCCCCH
Q 003503 721 ERRKRENPEAMEEDEVDDVAEIKAVHFEESMKYARRSVSD 760 (815)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~ 760 (815)
...+|++||+-|..++-..-++
T Consensus 373 ------------------rvhvtqedfemav~kvm~k~~e 394 (404)
T KOG0728|consen 373 ------------------RVHVTQEDFEMAVAKVMQKDSE 394 (404)
T ss_pred ------------------hccccHHHHHHHHHHHHhcccc
Confidence 2479999999999887444443
No 14
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-47 Score=404.86 Aligned_cols=228 Identities=43% Similarity=0.754 Sum_probs=218.3
Q ss_pred cCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchhhh
Q 003503 482 VPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 561 (815)
Q Consensus 482 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~ 561 (815)
..+++|+|+-|.++.|++|.|.+.+ ++.|..|.++|-+.|+|+||+||||||||+||+|+|++.+.||+...|+++-.+
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm 376 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM 376 (752)
T ss_pred hcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh
Confidence 3578999999999999999999886 889999999999999999999999999999999999999999999999999999
Q ss_pred ccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCCCC
Q 003503 562 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIID 641 (815)
Q Consensus 562 ~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld 641 (815)
|||...+.||.+|+.|+..+||||||||||++..+|..... ...+..+||||.+|||+..+.+||||+|||+|+.||
T Consensus 377 ~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~---~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD 453 (752)
T KOG0734|consen 377 FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQ---HYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALD 453 (752)
T ss_pred hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHH---HHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhh
Confidence 99999999999999999999999999999999999975432 278899999999999999999999999999999999
Q ss_pred ccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Q 003503 642 PALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIREN 713 (815)
Q Consensus 642 ~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~l~~~a~~~a~~~~ 713 (815)
+||+||||||++|.+|.||...|.+||+.++.+.+++.++|+..||+-|.|||||||.|+++.|+..|..+.
T Consensus 454 ~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dg 525 (752)
T KOG0734|consen 454 KALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDG 525 (752)
T ss_pred HHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998765
No 15
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=8e-45 Score=408.26 Aligned_cols=399 Identities=25% Similarity=0.381 Sum_probs=304.4
Q ss_pred CCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHH
Q 003503 308 APSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 387 (815)
Q Consensus 308 ~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~ 387 (815)
.|.++++.+++.++.+ .. ++..|.++........+.+|+.+. .-.+++.|.+ +-..++++.|+.++
T Consensus 81 ~~~~~vl~d~h~~~~~-----~~----~~r~l~~l~~~~~~~~~~~i~~~~--~~~~p~el~~---~~~~~~~~lP~~~e 146 (489)
T CHL00195 81 TPALFLLKDFNRFLND-----IS----ISRKLRNLSRILKTQPKTIIIIAS--ELNIPKELKD---LITVLEFPLPTESE 146 (489)
T ss_pred CCcEEEEecchhhhcc-----hH----HHHHHHHHHHHHHhCCCEEEEEcC--CCCCCHHHHh---ceeEEeecCcCHHH
Confidence 4789999999988832 11 233333333333334444554443 2457888875 45678999999999
Q ss_pred HHHHHHHHhcCCcc-ccchhhhHHHhhcCCCcHHHHHHHHHHHHHHhHHhhcccccccccchhhhhhccccccccccccc
Q 003503 388 RLEILRIHTKNMKL-AEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTA 466 (815)
Q Consensus 388 R~~il~~~~~~~~l-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a 466 (815)
...+++........ .++.+++.++..+.|++..++..++..+.... ..++.+ .++ . +. +.-.+.
T Consensus 147 i~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~~-----~~~~~~--~~~-----~--i~-~~k~q~ 211 (489)
T CHL00195 147 IKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIATY-----KTIDEN--SIP-----L--IL-EEKKQI 211 (489)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-----CCCChh--hHH-----H--HH-HHHHHH
Confidence 99999877654332 24456789999999999999888877643211 000000 000 0 00 000000
Q ss_pred ccccCCCcccccccccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHh
Q 003503 467 LGTSNPSALRETVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC 546 (815)
Q Consensus 467 l~~~~p~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~ 546 (815)
+. ....- ....+..+|++|||++.+|+.|.+.... .......+|+.+++|+|||||||||||++|+++|+++
T Consensus 212 ~~---~~~~l--e~~~~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~ 283 (489)
T CHL00195 212 IS---QTEIL--EFYSVNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW 283 (489)
T ss_pred Hh---hhccc--cccCCCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 10 00000 0113567899999999999998764322 2334567799999999999999999999999999999
Q ss_pred CCcEEEEeccchhhhccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCC
Q 003503 547 QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKK 626 (815)
Q Consensus 547 ~~~~i~v~~~~l~~~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~ 626 (815)
+.+|+.++++.+.++|+|+++++++.+|+.|+...||||||||||.++..+... ...+...+++++||+.|+. ...
T Consensus 284 ~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~--~d~~~~~rvl~~lL~~l~~--~~~ 359 (489)
T CHL00195 284 QLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK--GDSGTTNRVLATFITWLSE--KKS 359 (489)
T ss_pred CCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC--CCchHHHHHHHHHHHHHhc--CCC
Confidence 999999999999999999999999999999999999999999999998765432 2245678999999999985 356
Q ss_pred cEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCC--CCcccHHHHHHHcCCCCHHHHHHHHHH
Q 003503 627 TVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPI--SPDVDLSALARYTHGFSGADITEVCQR 704 (815)
Q Consensus 627 ~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~--~~~~~~~~la~~t~g~sg~di~~l~~~ 704 (815)
+|+||||||+++.||++++||||||+.++|++|+.++|.+||+.++++... ..+.++..||+.|+||||+||+++|.+
T Consensus 360 ~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~e 439 (489)
T CHL00195 360 PVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIE 439 (489)
T ss_pred ceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999988643 247899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccccHHHHHHHHhhccCC--CCHHHHHHHHHHHHHH
Q 003503 705 ACKYAIRENIEKDIERERRKRENPEAMEEDEVDDVAEIKAVHFEESMKYARRS--VSDADIRKYQLFAQTL 773 (815)
Q Consensus 705 a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s--vs~~~~~~y~~~~~~~ 773 (815)
|+..|..+. ..++.+||..|++.+.|+ +..+++..+++|...-
T Consensus 440 A~~~A~~~~--------------------------~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~~ 484 (489)
T CHL00195 440 AMYIAFYEK--------------------------REFTTDDILLALKQFIPLAQTEKEQIEALQNWASSG 484 (489)
T ss_pred HHHHHHHcC--------------------------CCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHcC
Confidence 998887532 368999999999999996 5788999999998753
No 16
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-46 Score=401.73 Aligned_cols=270 Identities=41% Similarity=0.751 Sum_probs=247.3
Q ss_pred ccccccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEech
Q 003503 204 EDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGP 283 (815)
Q Consensus 204 ~~~~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~ 283 (815)
+..-..++++|+||||+++...++...+.+|.+||++|+.+|+..|.||||+||||||||.||+++|++.+..|+.|.|+
T Consensus 500 EGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGP 579 (802)
T KOG0733|consen 500 EGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGP 579 (802)
T ss_pred ccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCH
Confidence 33446789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCC
Q 003503 284 EIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNS 363 (815)
Q Consensus 284 ~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ 363 (815)
+++++|+|+++..+|.+|+.|+...|||||+||+|+|++.|+........|+++||++.|||+..+.+|.||++||+|+.
T Consensus 580 ELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDi 659 (802)
T KOG0733|consen 580 ELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDI 659 (802)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcc
Confidence 99999999999999999999999999999999999999999988888899999999999999999999999999999999
Q ss_pred CCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhc--CCccccchhhhHHHhhcC--CCcHHHHHHHHHHHHHHhHHhhcc
Q 003503 364 IDPALRRFGRFDREIDIGVPDEVGRLEILRIHTK--NMKLAEDVDLERVAKDTH--GYVGSDLAALCTEAALQCIREKMD 439 (815)
Q Consensus 364 ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~--~~~l~~~~~l~~la~~t~--g~~~~dl~~l~~~a~~~~~~~~~~ 439 (815)
+||++.|||||++.++++.|+..+|..||+.+++ +.++..+++++.++..+. ||+|+||..||++|.+.++++...
T Consensus 660 IDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~ 739 (802)
T KOG0733|consen 660 IDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLF 739 (802)
T ss_pred cchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999 778999999999999887 999999999999999999988765
Q ss_pred cccccccchhhhhhcccccccccccccccccCCCc
Q 003503 440 VIDLEDETIDAEVLNSMAVTNEHFQTALGTSNPSA 474 (815)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~p~~ 474 (815)
.++.......... ....++..||+.|++.+.|+.
T Consensus 740 ~~~~~~~~~~~~~-~~~~~t~~hF~eA~~~i~pSv 773 (802)
T KOG0733|consen 740 EIDSSEDDVTVRS-STIIVTYKHFEEAFQRIRPSV 773 (802)
T ss_pred hccccCcccceee-eeeeecHHHHHHHHHhcCCCc
Confidence 4443332221111 134577889999999998874
No 17
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-45 Score=405.48 Aligned_cols=251 Identities=48% Similarity=0.842 Sum_probs=239.7
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 003503 208 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS 287 (815)
Q Consensus 208 ~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 287 (815)
+.++++|+||||+++++.+|++.|.+|++||+.|..+|+.|++|||||||||||||++||++|++.+..|+.|.|+++++
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~s 506 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFS 506 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHH
Q 003503 288 KLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA 367 (815)
Q Consensus 288 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~a 367 (815)
+|+|+++..++.+|+.|+...|||+|+||||.++..|+...+.+..|++++|++.|||+....+|+||++||+|+.||++
T Consensus 507 k~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~A 586 (693)
T KOG0730|consen 507 KYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPA 586 (693)
T ss_pred HhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHH
Confidence 99999999999999999999999999999999999998766788999999999999999999999999999999999999
Q ss_pred hhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhhHHHhhcCCCcHHHHHHHHHHHHHHhHHhhcccccccccc
Q 003503 368 LRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLEDET 447 (815)
Q Consensus 368 l~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~ 447 (815)
+.||||||+.|+++.|+.+.|++||+.+++++++.+++|+..++..|+||+|+||..+|++|+..++++..+
T Consensus 587 LlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~-------- 658 (693)
T KOG0730|consen 587 LLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIE-------- 658 (693)
T ss_pred HcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred hhhhhhcccccccccccccccccCCC
Q 003503 448 IDAEVLNSMAVTNEHFQTALGTSNPS 473 (815)
Q Consensus 448 ~~~~~~~~~~v~~~~~~~al~~~~p~ 473 (815)
...++.+||.+++...+++
T Consensus 659 -------a~~i~~~hf~~al~~~r~s 677 (693)
T KOG0730|consen 659 -------ATEITWQHFEEALKAVRPS 677 (693)
T ss_pred -------cccccHHHHHHHHHhhccc
Confidence 3457888999998877665
No 18
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-46 Score=370.38 Aligned_cols=249 Identities=39% Similarity=0.724 Sum_probs=235.6
Q ss_pred ccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchhh
Q 003503 481 EVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 560 (815)
Q Consensus 481 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~~ 560 (815)
..|.-+|.||||++...+++++.++.|+.+|+.+..+|+.+|+|++|||+||||||+||+|+|+...+.|+.+-+++|+.
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ 257 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCCC
Q 003503 561 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDII 640 (815)
Q Consensus 561 ~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~l 640 (815)
+|.|+..+.+|++|+-|...+|+|+||||||++..+|-.+.+.......|.+-+||+++||+...+.|-||+|||+.+.|
T Consensus 258 kylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~L 337 (440)
T KOG0726|consen 258 KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 337 (440)
T ss_pred HHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccccccc
Confidence 99999999999999999999999999999999999997665555666777778999999999999999999999999999
Q ss_pred CccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003503 641 DPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIER 720 (815)
Q Consensus 641 d~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~l~~~a~~~a~~~~~~~~~~~ 720 (815)
||||+||||+|+.|.||.||...++.||+.|..++.+..+++++.+....+.+|||||+++|.+|.+.|+++.
T Consensus 338 DPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRer------- 410 (440)
T KOG0726|consen 338 DPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER------- 410 (440)
T ss_pred CHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999998999999999999999999999975
Q ss_pred HHhhcCCCcccccccccccccccHHHHHHHHhhc
Q 003503 721 ERRKRENPEAMEEDEVDDVAEIKAVHFEESMKYA 754 (815)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~ 754 (815)
...++++||.+|.+.+
T Consensus 411 ------------------Rm~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 411 ------------------RMKVTMEDFKKAKEKV 426 (440)
T ss_pred ------------------HhhccHHHHHHHHHHH
Confidence 2369999999998876
No 19
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-46 Score=362.73 Aligned_cols=250 Identities=42% Similarity=0.727 Sum_probs=237.6
Q ss_pred ccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchhh
Q 003503 481 EVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 560 (815)
Q Consensus 481 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~~ 560 (815)
+.|.-.++||||++...++|.+.+..|+.+++.|.++|+.+|+|+|+|||||||||++|++.|...+..|+.+-++.+..
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCCC
Q 003503 561 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDII 640 (815)
Q Consensus 561 ~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~l 640 (815)
+|+|+..+.+|..|..|+...|+||||||+|++..+|-.+.........|.+-+||+++||+.+..+|-||+||||.+.|
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiL 323 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDIL 323 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeeccccccc
Confidence 99999999999999999999999999999999999997665555667788888999999999999999999999999999
Q ss_pred CccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003503 641 DPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIER 720 (815)
Q Consensus 641 d~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~l~~~a~~~a~~~~~~~~~~~ 720 (815)
||||+|.||+|+.|+||.|+++.|..|++.+.+++.+.+|+++++||+.|++|+|++++++|-+|.+.|+++.
T Consensus 324 DPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~------- 396 (424)
T KOG0652|consen 324 DPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRG------- 396 (424)
T ss_pred CHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred HHhhcCCCcccccccccccccccHHHHHHHHhhcc
Q 003503 721 ERRKRENPEAMEEDEVDDVAEIKAVHFEESMKYAR 755 (815)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~ 755 (815)
...|+.+||.+++.+++
T Consensus 397 ------------------atev~heDfmegI~eVq 413 (424)
T KOG0652|consen 397 ------------------ATEVTHEDFMEGILEVQ 413 (424)
T ss_pred ------------------cccccHHHHHHHHHHHH
Confidence 23799999999998774
No 20
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-45 Score=359.69 Aligned_cols=259 Identities=39% Similarity=0.714 Sum_probs=240.1
Q ss_pred ccccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccch
Q 003503 479 VVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 558 (815)
Q Consensus 479 ~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l 558 (815)
+-+.|++++.|+||..+..+.|++.++.|+.+|+.|..+|+.|++|+|||||||||||++|+|+|+..++-||.|-+++|
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigsel 247 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL 247 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCC
Q 003503 559 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPD 638 (815)
Q Consensus 559 ~~~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~ 638 (815)
..+|+|+..+.++++|+.|+...-|||||||||++.+.|=....+......|.+-+|+++|||+...+++-|++|||||+
T Consensus 248 vqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpd 327 (435)
T KOG0729|consen 248 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPD 327 (435)
T ss_pred HHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCC
Confidence 99999999999999999999999999999999999998855444445567788888999999999999999999999999
Q ss_pred CCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 003503 639 IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDI 718 (815)
Q Consensus 639 ~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~l~~~a~~~a~~~~~~~~~ 718 (815)
.|||||+||||+|+.++|.+||.+.|..||+.|.+.+.+..++.++.||....+-+|+||+.+|.+|.+.|++..-
T Consensus 328 tldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarr---- 403 (435)
T KOG0729|consen 328 TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARR---- 403 (435)
T ss_pred CcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHh----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998541
Q ss_pred HHHHhhcCCCcccccccccccccccHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 003503 719 ERERRKRENPEAMEEDEVDDVAEIKAVHFEESMKYARRSVSDADIRKYQLFA 770 (815)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~~~~~~y~~~~ 770 (815)
...|..||.+|..++ +..|.+|+
T Consensus 404 ---------------------k~atekdfl~av~kv--------vkgy~kfs 426 (435)
T KOG0729|consen 404 ---------------------KVATEKDFLDAVNKV--------VKGYAKFS 426 (435)
T ss_pred ---------------------hhhhHHHHHHHHHHH--------HHHHHhcc
Confidence 257889999999887 55665554
No 21
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-44 Score=368.86 Aligned_cols=287 Identities=36% Similarity=0.607 Sum_probs=245.5
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhc-CCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchhhh
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFG-MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 561 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~-~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~ 561 (815)
-.++|+||||++.++++|++.+..|+.+++.|...+ +.+++|+|||||||||||++|+++|.+.+.+|+.|.++.+.++
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~K 166 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSK 166 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchh
Confidence 368999999999999999999999999999997544 5678999999999999999999999999999999999999999
Q ss_pred ccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCC--cEEEEEecCCCCC
Q 003503 562 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKK--TVFIIGATNRPDI 639 (815)
Q Consensus 562 ~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~--~v~vi~aTn~~~~ 639 (815)
|+|++++.++.+|..|.+..||||||||+|+++..|+++ .+++...+.++|+...||+..++ +|+|+||||||..
T Consensus 167 WfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~---dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~D 243 (386)
T KOG0737|consen 167 WFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRST---DHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFD 243 (386)
T ss_pred hHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccc---hHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCcc
Confidence 999999999999999999999999999999999999432 25688889999999999997654 5999999999999
Q ss_pred CCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003503 640 IDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIE 719 (815)
Q Consensus 640 ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~l~~~a~~~a~~~~~~~~~~ 719 (815)
||.|++| |+.++++++.|+.++|.+|++..+++..+.+++|+.++|.+|+||||+||+++|+.|++..+++.+... .
T Consensus 244 lDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~-~ 320 (386)
T KOG0737|consen 244 LDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSE-T 320 (386)
T ss_pred HHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhc-c
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999998774 1
Q ss_pred H--HHhh-cCCCccccc-ccccccccccHHHHHHHHhhccCCCCHH--HHHHHHHHHHHHhc
Q 003503 720 R--ERRK-RENPEAMEE-DEVDDVAEIKAVHFEESMKYARRSVSDA--DIRKYQLFAQTLQQ 775 (815)
Q Consensus 720 ~--~~~~-~~~~~~~~~-~~~~~~~~i~~~~f~~a~~~~~~svs~~--~~~~y~~~~~~~~~ 775 (815)
. .... .......+. ...-...+++++||..|...+.+|++.+ .....+.|.+.|+.
T Consensus 321 ~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e 382 (386)
T KOG0737|consen 321 GLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYGE 382 (386)
T ss_pred cchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhcc
Confidence 1 0000 000000000 0001246899999999999888876543 34456677777654
No 22
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-44 Score=403.89 Aligned_cols=248 Identities=46% Similarity=0.786 Sum_probs=231.2
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchhhhc
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 562 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~ 562 (815)
..+.|.|+.|.+++|++|.|.+.+ +++|+.|.++|...|+|+||+||||||||+||||+|++.+.||+.++++|+..++
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 458999999999999999999886 8999999999999999999999999999999999999999999999999999999
Q ss_pred cCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccC-CCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCCCC
Q 003503 563 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRG-SSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIID 641 (815)
Q Consensus 563 ~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~-~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld 641 (815)
+|.....++.+|+.|+..+|||+|+||||.+...|+ ...+..+......+||||.+|||+...+.|+|+|+||||+.||
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld 464 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILD 464 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccC
Confidence 999999999999999999999999999999999994 2233445667889999999999999999999999999999999
Q ss_pred ccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003503 642 PALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIER 720 (815)
Q Consensus 642 ~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~t~g~sg~di~~l~~~a~~~a~~~~~~~~~~~ 720 (815)
+||+||||||+.|++++||...|.+||+.|+++..++ +++|+..+|.+|.||||+||.++|++|+..|.++.
T Consensus 465 ~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~------- 537 (774)
T KOG0731|consen 465 PALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKG------- 537 (774)
T ss_pred HHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhc-------
Confidence 9999999999999999999999999999999999885 78899999999999999999999999999999875
Q ss_pred HHhhcCCCcccccccccccccccHHHHHHHHhhccC
Q 003503 721 ERRKRENPEAMEEDEVDDVAEIKAVHFEESMKYARR 756 (815)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~ 756 (815)
...|+..||+.|++.+..
T Consensus 538 ------------------~~~i~~~~~~~a~~Rvi~ 555 (774)
T KOG0731|consen 538 ------------------LREIGTKDLEYAIERVIA 555 (774)
T ss_pred ------------------cCccchhhHHHHHHHHhc
Confidence 237899999999985543
No 23
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=3.1e-43 Score=388.00 Aligned_cols=253 Identities=44% Similarity=0.734 Sum_probs=235.8
Q ss_pred cccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchh
Q 003503 480 VEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 559 (815)
Q Consensus 480 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~ 559 (815)
.+.|+++|+||||++.+++.|++.+.+|+.+++.|..+|+.+++|+|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCC
Q 003503 560 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDI 639 (815)
Q Consensus 560 ~~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ 639 (815)
.+|+|++++.++.+|..|+...||||||||+|.++..|.....+......+++.+||++||++....+++||+|||+|+.
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~ 296 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT 296 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchh
Confidence 99999999999999999999999999999999999887544333344567899999999999988889999999999999
Q ss_pred CCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003503 640 IDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIE 719 (815)
Q Consensus 640 ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~l~~~a~~~a~~~~~~~~~~ 719 (815)
||||++||||||..|+|++|+.++|..||+.++.++++..++++..++..|+||||+||+++|++|++.|+++.
T Consensus 297 LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~------ 370 (398)
T PTZ00454 297 LDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN------ 370 (398)
T ss_pred CCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred HHHhhcCCCcccccccccccccccHHHHHHHHhhccCC
Q 003503 720 RERRKRENPEAMEEDEVDDVAEIKAVHFEESMKYARRS 757 (815)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s 757 (815)
...|+.+||++|++.+...
T Consensus 371 -------------------~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 371 -------------------RYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred -------------------CCccCHHHHHHHHHHHHhc
Confidence 2379999999999997554
No 24
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-42 Score=384.46 Aligned_cols=269 Identities=43% Similarity=0.738 Sum_probs=242.6
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM 286 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~ 286 (815)
+++++|+|+||||+++.+..|.+.+.+|+.||++|.+ |+.+..|||||||||||||.+|+++|.++...|+.|.|++++
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELL 742 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELL 742 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHH
Confidence 4678999999999999999999999999999999965 888999999999999999999999999999999999999999
Q ss_pred hhhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCC--chhHHHHHHHHHHHHhhhccc--CCCcEEEEEecCCCC
Q 003503 287 SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREK--THGEVERRIVSQLLTLMDGLK--SRAHVIVMGATNRPN 362 (815)
Q Consensus 287 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~--~~~~~~~~v~~~Ll~~ld~~~--~~~~vivi~atn~~~ 362 (815)
++|+|++++++|.+|+.|+...|||||+||+|.++|+|+. +++.+..|+++||+..||++. ....|+|||+||+|+
T Consensus 743 NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPD 822 (953)
T KOG0736|consen 743 NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPD 822 (953)
T ss_pred HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCcc
Confidence 9999999999999999999999999999999999999975 456788999999999999998 456899999999999
Q ss_pred CCCHHhhccCCcceEEEcCCCC-HHHHHHHHHHHhcCCccccchhhhHHHhhc-CCCcHHHHHHHHHHHHHHhHHhhccc
Q 003503 363 SIDPALRRFGRFDREIDIGVPD-EVGRLEILRIHTKNMKLAEDVDLERVAKDT-HGYVGSDLAALCTEAALQCIREKMDV 440 (815)
Q Consensus 363 ~ld~al~r~~rf~~~i~i~~p~-~~~R~~il~~~~~~~~l~~~~~l~~la~~t-~g~~~~dl~~l~~~a~~~~~~~~~~~ 440 (815)
-|||+|.||||||+.++++++. .+.+..+|++.++++.+.+++++.++|+.+ ..|+|+|+.++|..|.+.+++|....
T Consensus 823 LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ 902 (953)
T KOG0736|consen 823 LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHD 902 (953)
T ss_pred ccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999985 666789999999999999999999999987 47999999999999999999988765
Q ss_pred ccccccchhhhhhcccccccccccccccccCCCccc
Q 003503 441 IDLEDETIDAEVLNSMAVTNEHFQTALGTSNPSALR 476 (815)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~p~~~~ 476 (815)
++.............+.++++||.++.++..|+-..
T Consensus 903 ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS~ 938 (953)
T KOG0736|consen 903 IESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVSE 938 (953)
T ss_pred hhhccccccccCCceEEEEHHHHHHHHHhcCCcccH
Confidence 543322222223346779999999999999887543
No 25
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-42 Score=386.90 Aligned_cols=247 Identities=43% Similarity=0.790 Sum_probs=234.8
Q ss_pred cCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchhhh
Q 003503 482 VPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 561 (815)
Q Consensus 482 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~ 561 (815)
...++|.|+.|.++.|++|.+.+.. ++.|..|..+|...|+|++|+||||||||+|||++|++.+.||+.++++++..+
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 4578999999999999999999875 888999999999999999999999999999999999999999999999999999
Q ss_pred ccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCCCC
Q 003503 562 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIID 641 (815)
Q Consensus 562 ~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld 641 (815)
|+|-....+|.+|.+|++++|||+||||||++...|+.+.+..+...+..+||+|.+|||+..+..|+||++|||||.+|
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 99999999999999999999999999999999999987666666677889999999999999889999999999999999
Q ss_pred ccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003503 642 PALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIERE 721 (815)
Q Consensus 642 ~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~ 721 (815)
|||+||||||+.|.++.||...|.+|++.|+++.+++.++|+..+|+.|.||||+|+.+++++|+..|.+++
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n-------- 374 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRN-------- 374 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhc--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred HhhcCCCcccccccccccccccHHHHHHHHhhc
Q 003503 722 RRKRENPEAMEEDEVDDVAEIKAVHFEESMKYA 754 (815)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~ 754 (815)
...|++.||.+|+..+
T Consensus 375 -----------------~~~i~~~~i~ea~drv 390 (596)
T COG0465 375 -----------------KKEITMRDIEEAIDRV 390 (596)
T ss_pred -----------------CeeEeccchHHHHHHH
Confidence 2379999999999887
No 26
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=6.9e-42 Score=336.07 Aligned_cols=244 Identities=38% Similarity=0.692 Sum_probs=217.1
Q ss_pred ccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchhh
Q 003503 481 EVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 560 (815)
Q Consensus 481 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~~ 560 (815)
..+++.++|++|+++.|+.-+-.+.| ++.|+.|.+ ..|+++|||||||||||++|+++|++.+.||+.++..++++
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~---WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liG 189 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLIMEY-LENPERFGD---WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG 189 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHHHHH-hhChHHhcc---cCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHH
Confidence 35789999999999999876655554 677777665 56789999999999999999999999999999999999999
Q ss_pred hccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCCC
Q 003503 561 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDII 640 (815)
Q Consensus 561 ~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~l 640 (815)
.|+|+..+.|+++|++|++.+|||+||||+|+++-.|... +-.+...+++|.||++|||+..+.+|+.|||||+|+.|
T Consensus 190 ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQ--elRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~L 267 (368)
T COG1223 190 EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQ--ELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELL 267 (368)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHH--HhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhc
Confidence 9999999999999999999999999999999998877542 23455778999999999999999999999999999999
Q ss_pred CccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 003503 641 DPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITE-VCQRACKYAIRENIEKDIE 719 (815)
Q Consensus 641 d~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~-l~~~a~~~a~~~~~~~~~~ 719 (815)
|+|+.+ ||..-|+|.+|+.++|..|++.+++++|+.-+.++..+++.|.||||+||.. +++.|...|+.+.-
T Consensus 268 D~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~----- 340 (368)
T COG1223 268 DPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDR----- 340 (368)
T ss_pred CHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhch-----
Confidence 999998 9999999999999999999999999999999999999999999999999975 66777777776542
Q ss_pred HHHhhcCCCcccccccccccccccHHHHHHHHhhccCC
Q 003503 720 RERRKRENPEAMEEDEVDDVAEIKAVHFEESMKYARRS 757 (815)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s 757 (815)
..|+.+||+.|+++.+++
T Consensus 341 --------------------e~v~~edie~al~k~r~~ 358 (368)
T COG1223 341 --------------------EKVEREDIEKALKKERKR 358 (368)
T ss_pred --------------------hhhhHHHHHHHHHhhccc
Confidence 268999999999975443
No 27
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=3.6e-41 Score=374.04 Aligned_cols=257 Identities=48% Similarity=0.818 Sum_probs=238.0
Q ss_pred ccccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccch
Q 003503 479 VVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 558 (815)
Q Consensus 479 ~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l 558 (815)
..+.|.+.|++|+|+++.++.|.+.+.+|+.+++.|+.+|+.+++|+|||||||||||++|+++|.+++.+|+.+.++++
T Consensus 122 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l 201 (389)
T PRK03992 122 VIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 201 (389)
T ss_pred ecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHH
Confidence 44678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCC
Q 003503 559 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPD 638 (815)
Q Consensus 559 ~~~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~ 638 (815)
..+|+|++++.++.+|+.|+...||||||||+|.++..|+...........+.+.++|.+++++...++++||+|||+++
T Consensus 202 ~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~ 281 (389)
T PRK03992 202 VQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRID 281 (389)
T ss_pred hHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChh
Confidence 99999999999999999999999999999999999988865443334456778889999999998888999999999999
Q ss_pred CCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 003503 639 IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDI 718 (815)
Q Consensus 639 ~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~l~~~a~~~a~~~~~~~~~ 718 (815)
.+|++++||||||..|+||+|+.++|.+||+.++++.++..++++..+|..|+||||+||+++|++|++.|+++.
T Consensus 282 ~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~----- 356 (389)
T PRK03992 282 ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD----- 356 (389)
T ss_pred hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 999999999999999999999999999999999999999988999999999999999999999999999998763
Q ss_pred HHHHhhcCCCcccccccccccccccHHHHHHHHhhccCCCCH
Q 003503 719 ERERRKRENPEAMEEDEVDDVAEIKAVHFEESMKYARRSVSD 760 (815)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~ 760 (815)
...|+.+||.+|+..++++-..
T Consensus 357 --------------------~~~i~~~d~~~A~~~~~~~~~~ 378 (389)
T PRK03992 357 --------------------RTEVTMEDFLKAIEKVMGKEEK 378 (389)
T ss_pred --------------------CCCcCHHHHHHHHHHHhccccc
Confidence 2369999999999999876543
No 28
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-42 Score=366.66 Aligned_cols=298 Identities=36% Similarity=0.628 Sum_probs=249.0
Q ss_pred cccCCccccc--ccccchh-hhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCc-EEEEec
Q 003503 480 VEVPNVSWED--IGGLDNV-KRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-FISVKG 555 (815)
Q Consensus 480 ~~~~~~~~~~--i~g~~~~-k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~-~i~v~~ 555 (815)
+-.|+..|++ |||++.- -...++.+...+-.|+...++|+..-+|+|||||||||||++|+.|...+++. --.|+|
T Consensus 211 ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNG 290 (744)
T KOG0741|consen 211 IINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNG 290 (744)
T ss_pred ccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCc
Confidence 3457777777 5788743 34456666666778899999999999999999999999999999999999753 345899
Q ss_pred cchhhhccCccHHHHHHHHHHHhh--------CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCc
Q 003503 556 PELLTMWFGESEANVREIFDKARQ--------SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKT 627 (815)
Q Consensus 556 ~~l~~~~~g~se~~i~~~F~~a~~--------~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~ 627 (815)
|+++++|||+||.+||.+|..|.+ +..-||+|||||+++.+||+..++ .++++.|+||||.-|||++...+
T Consensus 291 PeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~-TGVhD~VVNQLLsKmDGVeqLNN 369 (744)
T KOG0741|consen 291 PEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGS-TGVHDTVVNQLLSKMDGVEQLNN 369 (744)
T ss_pred HHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCC-CCccHHHHHHHHHhcccHHhhhc
Confidence 999999999999999999999854 234699999999999999987554 67999999999999999999999
Q ss_pred EEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccC----CCCCcccHHHHHHHcCCCCHHHHHHHHH
Q 003503 628 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS----PISPDVDLSALARYTHGFSGADITEVCQ 703 (815)
Q Consensus 628 v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~----~~~~~~~~~~la~~t~g~sg~di~~l~~ 703 (815)
++||+-|||+|+||+||||||||...+++.+||+..|.+|++.|.+++ .++.|+|+.+||..|.+||||+|+.+++
T Consensus 370 ILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVk 449 (744)
T KOG0741|consen 370 ILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVK 449 (744)
T ss_pred EEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHH
Confidence 999999999999999999999999999999999999999999999876 4778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccccHHHHHHHHhhccCC--CCHHHHHHHHH---------HHHH
Q 003503 704 RACKYAIRENIEKDIERERRKRENPEAMEEDEVDDVAEIKAVHFEESMKYARRS--VSDADIRKYQL---------FAQT 772 (815)
Q Consensus 704 ~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s--vs~~~~~~y~~---------~~~~ 772 (815)
.|.-.|+.+.+..... ..-.....+...|++.||..|+..++|. ++++++..|.. +.+-
T Consensus 450 sA~S~A~nR~vk~~~~----------~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~v~~i 519 (744)
T KOG0741|consen 450 SAQSFAMNRHVKAGGK----------VEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPPVTRI 519 (744)
T ss_pred HHHHHHHHhhhccCcc----------eecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeecccHHHH
Confidence 9999999998765411 0011112345579999999999999995 68999988853 2333
Q ss_pred HhcccCCCCccccccc
Q 003503 773 LQQSRGFGSEFRFADR 788 (815)
Q Consensus 773 ~~~~~~~~~~~~~~~~ 788 (815)
+....-++.|+|.+++
T Consensus 520 l~~G~llv~qvk~s~~ 535 (744)
T KOG0741|consen 520 LDDGKLLVQQVKNSER 535 (744)
T ss_pred HhhHHHHHHHhhcccc
Confidence 3333445667777766
No 29
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=369.30 Aligned_cols=249 Identities=40% Similarity=0.722 Sum_probs=232.5
Q ss_pred ccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchhh
Q 003503 481 EVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 560 (815)
Q Consensus 481 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~~ 560 (815)
+.|..+|+||+|++..++.|.+.+.+|+.+++.|..+++.+++|+|||||||||||++|+++|++++.+|+.+.++++.+
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCCC
Q 003503 561 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDII 640 (815)
Q Consensus 561 ~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~l 640 (815)
+|+|++++.++.+|+.|+...||||||||||.++..|............+.+.+||++||++....++.||+|||+++.|
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~L 335 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESL 335 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHh
Confidence 99999999999999999999999999999999998886543333445677888999999999878889999999999999
Q ss_pred CccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003503 641 DPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIER 720 (815)
Q Consensus 641 d~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~l~~~a~~~a~~~~~~~~~~~ 720 (815)
|++++||||||+.|+|++||.++|.+||+.++.++.+..++++..++..++||||+||+++|++|++.|+++.
T Consensus 336 DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~------- 408 (438)
T PTZ00361 336 DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER------- 408 (438)
T ss_pred hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred HHhhcCCCcccccccccccccccHHHHHHHHhhc
Q 003503 721 ERRKRENPEAMEEDEVDDVAEIKAVHFEESMKYA 754 (815)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~ 754 (815)
...|+.+||.+|+.++
T Consensus 409 ------------------r~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 409 ------------------RMKVTQADFRKAKEKV 424 (438)
T ss_pred ------------------CCccCHHHHHHHHHHH
Confidence 2369999999999887
No 30
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-40 Score=357.65 Aligned_cols=280 Identities=38% Similarity=0.640 Sum_probs=249.1
Q ss_pred ccccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccch
Q 003503 479 VVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 558 (815)
Q Consensus 479 ~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l 558 (815)
....+++.|+|+.|++.+|+.+.+.+.||...++.|..+. .+.+|+||.||||+|||+|++++|.+++..|+.++++.|
T Consensus 144 ~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassL 222 (428)
T KOG0740|consen 144 GDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSL 222 (428)
T ss_pred hccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHh
Confidence 3445779999999999999999999999999999998744 566799999999999999999999999999999999999
Q ss_pred hhhccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCC--CCCcEEEEEecCC
Q 003503 559 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN--AKKTVFIIGATNR 636 (815)
Q Consensus 559 ~~~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~--~~~~v~vi~aTn~ 636 (815)
.++|+|++++.++.+|+-|+...|+|+|+||||+++..|.. ...+..+|+..++|.++++.. ..++|+||||||+
T Consensus 223 tsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~---~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~ 299 (428)
T KOG0740|consen 223 TSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSD---NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNR 299 (428)
T ss_pred hhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCC---cccccchhhhhHHHhhhccccCCCCCeEEEEecCCC
Confidence 99999999999999999999999999999999999999943 335667899999999999875 4568999999999
Q ss_pred CCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCC-CCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 003503 637 PDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSP-ISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIE 715 (815)
Q Consensus 637 ~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~-~~~~~~~~~la~~t~g~sg~di~~l~~~a~~~a~~~~~~ 715 (815)
||.+|.|++| ||.+++|+|+||+++|..+|+..+++.+ ...+.|++.|++.|+||||+||.++|++|++--++....
T Consensus 300 P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~ 377 (428)
T KOG0740|consen 300 PWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGG 377 (428)
T ss_pred chHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhccc
Confidence 9999999999 9999999999999999999999998774 334578999999999999999999999999988776533
Q ss_pred HHHHHHHhhcCCCcccccccccccccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhcc
Q 003503 716 KDIERERRKRENPEAMEEDEVDDVAEIKAVHFEESMKYARRSVSDADIRKYQLFAQTLQQS 776 (815)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~~~~~~y~~~~~~~~~~ 776 (815)
. ........+..+.++..||+.+++.++++++.+.+++|++|...|+.+
T Consensus 378 ~------------~~~~~~~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~fg~~ 426 (428)
T KOG0740|consen 378 T------------TDLEFIDADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEFGSS 426 (428)
T ss_pred c------------hhhhhcchhccCCCCcchHHHHHHhhccccCccccchhHHHhhhhccc
Confidence 2 011112335567899999999999999999999999999999999754
No 31
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.6e-39 Score=330.44 Aligned_cols=263 Identities=40% Similarity=0.664 Sum_probs=233.7
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q 003503 209 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSK 288 (815)
Q Consensus 209 ~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~ 288 (815)
-+.+.|+||.|+.+.++-|+|.|-+|+.+|++|+.+ ..|=++||++||||||||+||+++|.+++..|+.|+.+.+.++
T Consensus 206 np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSK 284 (491)
T KOG0738|consen 206 NPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSK 284 (491)
T ss_pred CCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhh
Confidence 357999999999999999999999999999999864 4566899999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCch-hHHHHHHHHHHHHhhhcccCC----CcEEEEEecCCCCC
Q 003503 289 LAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTH-GEVERRIVSQLLTLMDGLKSR----AHVIVMGATNRPNS 363 (815)
Q Consensus 289 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~-~~~~~~v~~~Ll~~ld~~~~~----~~vivi~atn~~~~ 363 (815)
|.|++++.+|.+|+-|+...|++|||||||.|+..++... .+..+|+.+.|+..|||+... ..|+|+++||-|++
T Consensus 285 wRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWd 364 (491)
T KOG0738|consen 285 WRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWD 364 (491)
T ss_pred hccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcc
Confidence 9999999999999999999999999999999999987653 467799999999999998653 34899999999999
Q ss_pred CCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhhHHHhhcCCCcHHHHHHHHHHHHHHhHHhhcccccc
Q 003503 364 IDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDL 443 (815)
Q Consensus 364 ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 443 (815)
||++++| ||.+.|++|.|+.+.|..+++..++...+.+++++..+++.++||+|+||..+|++|.+..+++....+.-
T Consensus 365 iDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~ 442 (491)
T KOG0738|consen 365 IDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTP 442 (491)
T ss_pred hHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999999987554322
Q ss_pred ccc-chhhhhhcccccccccccccccccCCCcc
Q 003503 444 EDE-TIDAEVLNSMAVTNEHFQTALGTSNPSAL 475 (815)
Q Consensus 444 ~~~-~~~~~~~~~~~v~~~~~~~al~~~~p~~~ 475 (815)
... ....+.. ...++..||+.|+..+.|+..
T Consensus 443 ~ei~~lakE~~-~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 443 REIRQLAKEEP-KMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred HHhhhhhhhcc-ccccchhhHHHHHHHcCcCCC
Confidence 211 1111222 255889999999999988754
No 32
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=4.8e-38 Score=309.07 Aligned_cols=303 Identities=35% Similarity=0.599 Sum_probs=256.8
Q ss_pred hhhHHHHhhHhhhhcCcccccCcEEEEecCceeEEEEEEEecCCceeeeCCCceEEecCCCCccccccccCCCCcccccC
Q 003503 140 GNLFDAYLKPYFMESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPVKREDEERLNEVGYDDVGG 219 (815)
Q Consensus 140 ~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~p~~~~~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~i~G 219 (815)
.++|+.|.++.|.+ ..++.|+.+.-.+....+.|+|+++.|.+.+++++.|.+... .+.. ...+..++++++|+.|
T Consensus 50 ~~~F~~YArdQW~G--e~v~eg~ylFD~~~~pdyAfkvI~~~P~~~~i~~st~i~vl~-~~~~-~~~e~~~~it~ddViG 125 (368)
T COG1223 50 PEVFNIYARDQWLG--EVVREGDYLFDTRMFPDYAFKVIRVVPSGGGIITSTTIFVLE-TPRE-EDREIISDITLDDVIG 125 (368)
T ss_pred HHHHHHHHHHhhcc--eeeecCceEeecccccccceeEEEEeCCCCceecceEEEEec-Ccch-hhhhhhccccHhhhhc
Confidence 46889999999975 458999988766666778999999999998887766655433 2221 1234568999999999
Q ss_pred hHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhhhchhHHHHHH
Q 003503 220 VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRK 299 (815)
Q Consensus 220 ~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~ 299 (815)
+++.+.+.+-+++. +..|+.|..+ .|++||+|||||||||++|++||++...+++.++..++++.++|+...+++.
T Consensus 126 qEeAK~kcrli~~y-LenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihe 201 (368)
T COG1223 126 QEEAKRKCRLIMEY-LENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHE 201 (368)
T ss_pred hHHHHHHHHHHHHH-hhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHH
Confidence 99999998877776 7888888765 5899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEecccccccCCCCCc--hhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceE
Q 003503 300 AFEEAEKNAPSIIFIDELDSIAPKREKT--HGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDRE 377 (815)
Q Consensus 300 vf~~a~~~~p~il~iDEid~l~~~~~~~--~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~ 377 (815)
+++.|....|||+||||+|++.-.+... .+++ ..+++.|++.||++..+..|+.|++||+|+.+|+++|+ ||..+
T Consensus 202 ly~rA~~~aPcivFiDE~DAiaLdRryQelRGDV-sEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRs--RFEeE 278 (368)
T COG1223 202 LYERARKAAPCIVFIDELDAIALDRRYQELRGDV-SEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRS--RFEEE 278 (368)
T ss_pred HHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccH-HHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHh--hhhhe
Confidence 9999999999999999999998776432 2333 45789999999999999999999999999999999998 99999
Q ss_pred EEcCCCCHHHHHHHHHHHhcCCccccchhhhHHHhhcCCCcHHHHHHH-HHHHHHHhHHhhcccccccccchhhhhhccc
Q 003503 378 IDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAAL-CTEAALQCIREKMDVIDLEDETIDAEVLNSM 456 (815)
Q Consensus 378 i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (815)
|+|..|+.++|.+|++.+.+.+++.-+.+++.++..|.|++|+||..- ++.|..+++.... -
T Consensus 279 IEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~-----------------e 341 (368)
T COG1223 279 IEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDR-----------------E 341 (368)
T ss_pred eeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhch-----------------h
Confidence 999999999999999999999999988999999999999999998654 4556566665432 2
Q ss_pred cccccccccccccc
Q 003503 457 AVTNEHFQTALGTS 470 (815)
Q Consensus 457 ~v~~~~~~~al~~~ 470 (815)
.++.+|++.++...
T Consensus 342 ~v~~edie~al~k~ 355 (368)
T COG1223 342 KVEREDIEKALKKE 355 (368)
T ss_pred hhhHHHHHHHHHhh
Confidence 36667777777653
No 33
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.7e-39 Score=312.23 Aligned_cols=247 Identities=43% Similarity=0.732 Sum_probs=225.6
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM 286 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~ 286 (815)
++.++++|.||||++-+++++++.+++|+.|.++++..|+.||+|||+|||||||||+|++++|+...+.|+.+.|+++.
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchh---HHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCC
Q 003503 287 SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHG---EVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNS 363 (815)
Q Consensus 287 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ 363 (815)
.+|.|+....++.+|..++.+.|+|+||||+|+++.++-.... .--+|++-.|++.|||+.+..+|-||.+||+.+.
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradt 306 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADT 306 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccc
Confidence 9999999999999999999999999999999999988754332 2234667778899999999999999999999999
Q ss_pred CCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhhHHHhhcCCCcHHHHHHHHHHHHHHhHHhhcccccc
Q 003503 364 IDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDL 443 (815)
Q Consensus 364 ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 443 (815)
+||+|.|+||+++.|++|.|+..++.-++...+.++.+.+++|++.+..+....+++||.++|++|++.+++...
T Consensus 307 ldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nr----- 381 (408)
T KOG0727|consen 307 LDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENR----- 381 (408)
T ss_pred cCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988653
Q ss_pred cccchhhhhhccccccccccccccccc
Q 003503 444 EDETIDAEVLNSMAVTNEHFQTALGTS 470 (815)
Q Consensus 444 ~~~~~~~~~~~~~~v~~~~~~~al~~~ 470 (815)
..+...||+++....
T Consensus 382 ------------yvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 382 ------------YVVLQKDFEKAYKTV 396 (408)
T ss_pred ------------eeeeHHHHHHHHHhh
Confidence 335566676665443
No 34
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-39 Score=323.09 Aligned_cols=246 Identities=46% Similarity=0.773 Sum_probs=225.8
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 003503 208 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS 287 (815)
Q Consensus 208 ~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 287 (815)
+-+.-+|.||||++.+++.|.+.+++|+.||++++..|+.||+||+|||+||||||.||+++|+...+.|+.+-|++++.
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ 257 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH
Confidence 44677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHH---HHHHHhhhcccCCCcEEEEEecCCCCCC
Q 003503 288 KLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIV---SQLLTLMDGLKSRAHVIVMGATNRPNSI 364 (815)
Q Consensus 288 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~---~~Ll~~ld~~~~~~~vivi~atn~~~~l 364 (815)
+|.|+....+|.+|+-|..+.|+|+||||||++..++....+.-++.+. -.|++.+|++.++..|-||.+||+.+.+
T Consensus 258 kylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~L 337 (440)
T KOG0726|consen 258 KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 337 (440)
T ss_pred HHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccccccc
Confidence 9999999999999999999999999999999999888655443333333 3567788999999999999999999999
Q ss_pred CHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhhHHHhhcCCCcHHHHHHHHHHHHHHhHHhhccccccc
Q 003503 365 DPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLE 444 (815)
Q Consensus 365 d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 444 (815)
||+|.|+||+++.|+|+.|+...+..|+.+|+.++.+..+++++.+......++|+||.++|.+|.+.+++...
T Consensus 338 DPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerR------ 411 (440)
T KOG0726|consen 338 DPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERR------ 411 (440)
T ss_pred CHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHH------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988653
Q ss_pred ccchhhhhhccccccccccccccccc
Q 003503 445 DETIDAEVLNSMAVTNEHFQTALGTS 470 (815)
Q Consensus 445 ~~~~~~~~~~~~~v~~~~~~~al~~~ 470 (815)
..++++||.++.+.+
T Consensus 412 -----------m~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 412 -----------MKVTMEDFKKAKEKV 426 (440)
T ss_pred -----------hhccHHHHHHHHHHH
Confidence 457888888776544
No 35
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-38 Score=311.48 Aligned_cols=258 Identities=39% Similarity=0.722 Sum_probs=227.7
Q ss_pred cCCceeeeCCCceEEecCCCCc---cc---cccccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEE
Q 003503 181 DPGEYCVVAPDTEIFCEGEPVK---RE---DEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILL 254 (815)
Q Consensus 181 ~p~~~~~~~~~t~i~~~~~~~~---~~---~~~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL 254 (815)
.|.+.+-+..++-+.++.-|.. +. ..+.-+.-+|+||||++++++.+.+.+.+|+.|++.|+++|+.||+|+|+
T Consensus 131 kPgDLVgvnKDsyliletLP~eyDsrVkaMevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLm 210 (424)
T KOG0652|consen 131 KPGDLVGVNKDSYLILETLPSEYDSRVKAMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLM 210 (424)
T ss_pred CCcceeeecCCceeehhcCChhhhhhcceeeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEe
Confidence 3566666777777655433321 11 12334567899999999999999999999999999999999999999999
Q ss_pred ECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHH--
Q 003503 255 YGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVE-- 332 (815)
Q Consensus 255 ~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~-- 332 (815)
|||||||||.+||+.|...+..|+.+.|+.++..+.|+..+.+|..|+.+....|+||||||+|++..++-.....-+
T Consensus 211 YGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDRE 290 (424)
T KOG0652|consen 211 YGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDRE 290 (424)
T ss_pred eCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999887754322112
Q ss_pred -HHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhhHHH
Q 003503 333 -RRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVA 411 (815)
Q Consensus 333 -~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la 411 (815)
+|..-.|++.+||+.+...|-||++||+.+-+||+|.|.||+++.|+||.|+++.|.+|+++|.+++.+.+++++++++
T Consensus 291 VQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELa 370 (424)
T KOG0652|consen 291 VQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELA 370 (424)
T ss_pred HHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHh
Confidence 3344557788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHhHHhhc
Q 003503 412 KDTHGYVGSDLAALCTEAALQCIREKM 438 (815)
Q Consensus 412 ~~t~g~~~~dl~~l~~~a~~~~~~~~~ 438 (815)
+.|.+|.|+...+.|-+|++.++++..
T Consensus 371 RsTddFNGAQcKAVcVEAGMiALRr~a 397 (424)
T KOG0652|consen 371 RSTDDFNGAQCKAVCVEAGMIALRRGA 397 (424)
T ss_pred hcccccCchhheeeehhhhHHHHhccc
Confidence 999999999999999999999998753
No 36
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-38 Score=310.44 Aligned_cols=246 Identities=42% Similarity=0.792 Sum_probs=225.8
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM 286 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~ 286 (815)
++.++-+|+-+||+++++++|++.+++|.+||++|+++|+..|+|+|||||||+|||.||+++|......|+.++|+++.
T Consensus 139 eKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselv 218 (404)
T KOG0728|consen 139 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 218 (404)
T ss_pred hhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCch----hHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCC
Q 003503 287 SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTH----GEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN 362 (815)
Q Consensus 287 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~----~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~ 362 (815)
.+|.|+....++.+|--|+.+.|+|+|+||||.+...+.... +++ +|..-.|++.+|++....++-||.+||+.+
T Consensus 219 qk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsev-qrtmlellnqldgfeatknikvimatnrid 297 (404)
T KOG0728|consen 219 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEV-QRTMLELLNQLDGFEATKNIKVIMATNRID 297 (404)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHH-HHHHHHHHHhccccccccceEEEEeccccc
Confidence 999999999999999999999999999999999987765432 233 344556778899999999999999999999
Q ss_pred CCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhhHHHhhcCCCcHHHHHHHHHHHHHHhHHhhccccc
Q 003503 363 SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVID 442 (815)
Q Consensus 363 ~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~ 442 (815)
-+||+|.|+||.++.|+||+|+++.|.+||++|.+++.+...+++..+|+...|-+|+++...|.+|++.++++.
T Consensus 298 ild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer----- 372 (404)
T KOG0728|consen 298 ILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER----- 372 (404)
T ss_pred cccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred ccccchhhhhhccccccccccccccccc
Q 003503 443 LEDETIDAEVLNSMAVTNEHFQTALGTS 470 (815)
Q Consensus 443 ~~~~~~~~~~~~~~~v~~~~~~~al~~~ 470 (815)
...++.+||+-|...+
T Consensus 373 ------------rvhvtqedfemav~kv 388 (404)
T KOG0728|consen 373 ------------RVHVTQEDFEMAVAKV 388 (404)
T ss_pred ------------hccccHHHHHHHHHHH
Confidence 3567888888765543
No 37
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=2.4e-38 Score=363.67 Aligned_cols=249 Identities=44% Similarity=0.805 Sum_probs=228.5
Q ss_pred ccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchhh
Q 003503 481 EVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 560 (815)
Q Consensus 481 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~~ 560 (815)
+.+.++|+||+|++++|+++.+.+.+ +.+++.+..++..+++|+|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 48 ~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 126 (495)
T TIGR01241 48 EKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 126 (495)
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHH
Confidence 45789999999999999999998876 78888999999999999999999999999999999999999999999999999
Q ss_pred hccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCCC
Q 003503 561 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDII 640 (815)
Q Consensus 561 ~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~l 640 (815)
.|+|.+++.++.+|+.|+...||||||||||.++..|+...........+++++||.+||++....+++||+|||+|+.|
T Consensus 127 ~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~l 206 (495)
T TIGR01241 127 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVL 206 (495)
T ss_pred HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhc
Confidence 99999999999999999999999999999999998886533333445678999999999999888899999999999999
Q ss_pred CccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003503 641 DPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIER 720 (815)
Q Consensus 641 d~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~l~~~a~~~a~~~~~~~~~~~ 720 (815)
||+++||||||+.|++++|+.++|.+||+.++++.++..++++..+|+.+.||||+||.++|++|+..|.++.
T Consensus 207 d~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~------- 279 (495)
T TIGR01241 207 DPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKN------- 279 (495)
T ss_pred CHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC-------
Confidence 9999999999999999999999999999999999888888999999999999999999999999998876643
Q ss_pred HHhhcCCCcccccccccccccccHHHHHHHHhhcc
Q 003503 721 ERRKRENPEAMEEDEVDDVAEIKAVHFEESMKYAR 755 (815)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~ 755 (815)
...|+.+||+.|+..+.
T Consensus 280 ------------------~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 280 ------------------KTEITMNDIEEAIDRVI 296 (495)
T ss_pred ------------------CCCCCHHHHHHHHHHHh
Confidence 23699999999999864
No 38
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-39 Score=325.94 Aligned_cols=247 Identities=41% Similarity=0.726 Sum_probs=228.8
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchhhhc
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 562 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~ 562 (815)
.+++|+.++|+..+..++++.+..|+..+++|.++|+.+|++++||||||+|||.+|+++|..++.+|+.+..+++.++|
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCCCCc
Q 003503 563 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDP 642 (815)
Q Consensus 563 ~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~ 642 (815)
.||+.+.||+.|..|+...|||||+||||++.++|-+.....+....+.+-.|+++||++...++|-+|+|||+|+.|||
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdp 286 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDP 286 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccch
Confidence 99999999999999999999999999999999998544444455667777788999999999999999999999999999
Q ss_pred cccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003503 643 ALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIERER 722 (815)
Q Consensus 643 allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~ 722 (815)
||+||||+|+.+.+|+|+...|..|++.+........++|.+.+.+..+||+|+|++++|++|.+.|+++.-
T Consensus 287 aLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~-------- 358 (388)
T KOG0651|consen 287 ALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEER-------- 358 (388)
T ss_pred hhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhh--------
Confidence 999999999999999999999999999999888888889999999999999999999999999999887641
Q ss_pred hhcCCCcccccccccccccccHHHHHHHHhhc
Q 003503 723 RKRENPEAMEEDEVDDVAEIKAVHFEESMKYA 754 (815)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~ 754 (815)
..+-.++|..++.+.
T Consensus 359 -----------------~~vl~Ed~~k~vrk~ 373 (388)
T KOG0651|consen 359 -----------------DEVLHEDFMKLVRKQ 373 (388)
T ss_pred -----------------HHHhHHHHHHHHHHH
Confidence 257788888888765
No 39
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=4.9e-38 Score=352.26 Aligned_cols=252 Identities=42% Similarity=0.771 Sum_probs=214.9
Q ss_pred cccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCc----------
Q 003503 480 VEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN---------- 549 (815)
Q Consensus 480 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~---------- 549 (815)
.+.|+++|++|||++..++++++.+.+|+.+++.|..+|+.+++|+|||||||||||++|+++|++++.+
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 3468899999999999999999999999999999999999999999999999999999999999998543
Q ss_pred EEEEeccchhhhccCccHHHHHHHHHHHhhC----CCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCC
Q 003503 550 FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAK 625 (815)
Q Consensus 550 ~i~v~~~~l~~~~~g~se~~i~~~F~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~ 625 (815)
|+.+++++++++|+|++++.++.+|+.++.. .||||||||+|+++..|+... .+....+++++||++||++...
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~--s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV--SSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc--cchHHHHHHHHHHHHhcccccC
Confidence 7788999999999999999999999998864 699999999999998886432 2334578899999999999888
Q ss_pred CcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhcc-CCCCC---------cccHHHHHH-------
Q 003503 626 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRK-SPISP---------DVDLSALAR------- 688 (815)
Q Consensus 626 ~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~-~~~~~---------~~~~~~la~------- 688 (815)
++++||+|||+++.||||++||||||..|+|++|+.++|.+||+.++.. .++.. ..++..+++
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~ 411 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLY 411 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999999864 34421 112222222
Q ss_pred ----------------------HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccccHHH
Q 003503 689 ----------------------YTHGFSGADITEVCQRACKYAIRENIEKDIERERRKRENPEAMEEDEVDDVAEIKAVH 746 (815)
Q Consensus 689 ----------------------~t~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 746 (815)
.++.+||++|+++|.+|...|+.+.+... ...|+.+|
T Consensus 412 a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~---------------------~~~~~~~~ 470 (512)
T TIGR03689 412 ATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGG---------------------QVGLRIEH 470 (512)
T ss_pred hhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcC---------------------CcCcCHHH
Confidence 15678899999999999998888876321 23789999
Q ss_pred HHHHHhhc
Q 003503 747 FEESMKYA 754 (815)
Q Consensus 747 f~~a~~~~ 754 (815)
+..|+..-
T Consensus 471 l~~a~~~e 478 (512)
T TIGR03689 471 LLAAVLDE 478 (512)
T ss_pred HHHHHHHh
Confidence 99998653
No 40
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-38 Score=364.51 Aligned_cols=387 Identities=37% Similarity=0.580 Sum_probs=303.7
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC-----CeEEEEechh
Q 003503 210 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG-----AFFFLINGPE 284 (815)
Q Consensus 210 ~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~-----~~~i~v~~~~ 284 (815)
..++|++|||++..+.+++++|-+|+.||++|.++++.||+|||++||||||||..|+++|..+. ..++.-.|.+
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 46899999999999999999999999999999999999999999999999999999999998874 2356678899
Q ss_pred hhhhhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCC
Q 003503 285 IMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI 364 (815)
Q Consensus 285 l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~l 364 (815)
..++|+|+.+..++.+|++|+..+|+|+|+||||-|++.+......+...++..|+.+|+|+..++.|+|||+||+++.+
T Consensus 340 ~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~ 419 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAI 419 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCcccc
Confidence 99999999999999999999999999999999999999998888888899999999999999999999999999999999
Q ss_pred CHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhhHHHhhcCCCcHHHHHHHHHHHHHHhHHhhcccccc
Q 003503 365 DPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDL 443 (815)
Q Consensus 365 d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 443 (815)
|+++||+|||+++++++.|+.+.|..|+.++.++..-. ....+..++..+.||.|+||.+||.+|++.++++....+..
T Consensus 420 dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~ 499 (1080)
T KOG0732|consen 420 DPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYS 499 (1080)
T ss_pred chhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeec
Confidence 99999999999999999999999999999998876522 23457889999999999999999999999999887665443
Q ss_pred cccchhhhhhcccccccccccccccccCCCcccccccccCCcccc--cccccchhhhhhhccccCCCCC-------hhhh
Q 003503 444 EDETIDAEVLNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWE--DIGGLDNVKRELQETVQYPVEH-------PEKF 514 (815)
Q Consensus 444 ~~~~~~~~~~~~~~v~~~~~~~al~~~~p~~~~~~~~~~~~~~~~--~i~g~~~~k~~l~~~i~~~~~~-------~~~~ 514 (815)
...... .....+.+...+|..|+....|+..|........+.-. -+-+.......++..+...... ...+
T Consensus 500 s~~kl~-~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v 578 (1080)
T KOG0732|consen 500 SSDKLL-IDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLV 578 (1080)
T ss_pred cccccc-ccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHH
Confidence 332221 11234458888999999988888776533221111100 0110111111111111100000 0011
Q ss_pred h------hhcCCCCcceEEeCCCCCChhHHHHHHHHHh-CCcEEEEeccchhhhc-cCccHHHHHHHHHHHhhCCCeEEE
Q 003503 515 E------KFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-QANFISVKGPELLTMW-FGESEANVREIFDKARQSAPCVLF 586 (815)
Q Consensus 515 ~------~~~~~~~~gilL~GppGtGKT~lakala~~~-~~~~i~v~~~~l~~~~-~g~se~~i~~~F~~a~~~~p~ilf 586 (815)
+ .+.+-....+++.|..|.|-+.+..+|-+.+ +.+......+.++..- .+..+..|..+|..|+...|||+|
T Consensus 579 ~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ 658 (1080)
T KOG0732|consen 579 RSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQSLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVF 658 (1080)
T ss_pred HhhhcccchhhhcCcHHhcCCCcccccCcccHHHHHHHhccchHHHHHHHHHhccccccHHHHHHHHHHHHhccCCceee
Confidence 1 1112223348899999999999999998776 4555555555555443 456678899999999999999999
Q ss_pred Eecchhhhhcc
Q 003503 587 FDELDSIATQR 597 (815)
Q Consensus 587 iDEid~l~~~r 597 (815)
|-.+|.+....
T Consensus 659 ip~~d~w~~~~ 669 (1080)
T KOG0732|consen 659 IPNVDEWARVI 669 (1080)
T ss_pred ccchhhhhhcC
Confidence 99999987543
No 41
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-38 Score=333.88 Aligned_cols=228 Identities=43% Similarity=0.737 Sum_probs=217.9
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 003503 208 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS 287 (815)
Q Consensus 208 ~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 287 (815)
....++|+|+-|+++.++++.|++++ ++.|+.|.+||-.-|+||||+||||||||+|||++|++.+.+|+...|+++-.
T Consensus 297 ~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdE 375 (752)
T KOG0734|consen 297 QMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDE 375 (752)
T ss_pred hhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhh
Confidence 34578999999999999999999997 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHH
Q 003503 288 KLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA 367 (815)
Q Consensus 288 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~a 367 (815)
.++|....++|.+|+.|+.+.||||||||||++..+|........+..++||+..|||+.++..|+||++||.|+.+|++
T Consensus 376 m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~A 455 (752)
T KOG0734|consen 376 MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKA 455 (752)
T ss_pred hhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHH
Confidence 99999999999999999999999999999999999987666667888999999999999999999999999999999999
Q ss_pred hhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhhHHHhhcCCCcHHHHHHHHHHHHHHhHHh
Q 003503 368 LRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIRE 436 (815)
Q Consensus 368 l~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 436 (815)
|.||||||+++.+|.||...|.+||+.|+.++.+..++|+.-+|+-|.||+|+||.+|+..|++.+...
T Consensus 456 L~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~d 524 (752)
T KOG0734|consen 456 LTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVD 524 (752)
T ss_pred hcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999877543
No 42
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=1.7e-37 Score=343.80 Aligned_cols=250 Identities=50% Similarity=0.837 Sum_probs=230.7
Q ss_pred cccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchh
Q 003503 480 VEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 559 (815)
Q Consensus 480 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~ 559 (815)
.+.|.+.|++|+|+++.++.|.+.+.+|+.+++.|..+|+.+++|+|||||||||||++|+++|+.++.+|+.+.++++.
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCC
Q 003503 560 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDI 639 (815)
Q Consensus 560 ~~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ 639 (815)
.+|+|+....++.+|+.++...|+||||||+|.+...|.....+......+.+.++|.+++++...++++||+|||+++.
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ 273 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDI 273 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 99999999999999999999999999999999998877554333344566788899999999877788999999999999
Q ss_pred CCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003503 640 IDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIE 719 (815)
Q Consensus 640 ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~l~~~a~~~a~~~~~~~~~~ 719 (815)
+|++++||||||+.|+|++|+.++|.+||+.++++..+..++++..+++.++||||+||.++|++|++.|+++.
T Consensus 274 ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~------ 347 (364)
T TIGR01242 274 LDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE------ 347 (364)
T ss_pred CChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC------
Confidence 99999999999999999999999999999999999988888999999999999999999999999999998753
Q ss_pred HHHhhcCCCcccccccccccccccHHHHHHHHhhc
Q 003503 720 RERRKRENPEAMEEDEVDDVAEIKAVHFEESMKYA 754 (815)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~ 754 (815)
...|+.+||.+|+..+
T Consensus 348 -------------------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 348 -------------------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred -------------------CCccCHHHHHHHHHHh
Confidence 2369999999999875
No 43
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-37 Score=337.25 Aligned_cols=228 Identities=43% Similarity=0.723 Sum_probs=221.3
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhhh
Q 003503 211 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLA 290 (815)
Q Consensus 211 ~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~ 290 (815)
.+.|+||||+.++++.+++.+++|-+||.+|.++.+.-+.|||||||||||||.||.++|...+..|+.|.|++++++|.
T Consensus 663 gi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyI 742 (952)
T KOG0735|consen 663 GIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYI 742 (952)
T ss_pred CCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHh
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhc
Q 003503 291 GESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRR 370 (815)
Q Consensus 291 g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r 370 (815)
|.+++.+|.+|..|....|||||+||+|.++|+|+.....+..|+++||++.|||...-.+|.|+++|.+|+.|||||.|
T Consensus 743 GaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLR 822 (952)
T KOG0735|consen 743 GASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLR 822 (952)
T ss_pred cccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcC
Confidence 99999999999999999999999999999999999988889999999999999999998999999999999999999999
Q ss_pred cCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhhHHHhhcCCCcHHHHHHHHHHHHHHhHHhhc
Q 003503 371 FGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKM 438 (815)
Q Consensus 371 ~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~ 438 (815)
+||+|+.++.+.|++.+|++||+.......+..++|++.+|..|.||+|+|+..|+-.|.+.++.+..
T Consensus 823 pGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l 890 (952)
T KOG0735|consen 823 PGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEIL 890 (952)
T ss_pred CCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888876653
No 44
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-37 Score=306.38 Aligned_cols=231 Identities=44% Similarity=0.792 Sum_probs=214.9
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM 286 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~ 286 (815)
++.++++|.|+||..+++++|++.+++|+.||+.|-+||+.||+|||+|||||||||.+||++|+..++.|+.|-|+++.
T Consensus 169 eekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselv 248 (435)
T KOG0729|consen 169 EEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELV 248 (435)
T ss_pred ecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCc----hhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCC
Q 003503 287 SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKT----HGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN 362 (815)
Q Consensus 287 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~----~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~ 362 (815)
.+|.|+....++.+|+-++....||+|+||||++...+-.. .+++ +|..-.|.+.+|++..++++-|+.+||+|+
T Consensus 249 qkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnev-qrtmleli~qldgfdprgnikvlmatnrpd 327 (435)
T KOG0729|consen 249 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEV-QRTMLELINQLDGFDPRGNIKVLMATNRPD 327 (435)
T ss_pred HHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHH-HHHHHHHHHhccCCCCCCCeEEEeecCCCC
Confidence 99999999999999999999999999999999998776332 2233 344456778899999999999999999999
Q ss_pred CCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhhHHHhhcCCCcHHHHHHHHHHHHHHhHHhhc
Q 003503 363 SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKM 438 (815)
Q Consensus 363 ~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~ 438 (815)
.+||+|.|+||+++.++|..|+.+.|..|+++|.+.+.+..++.++-++..+.+-+|+++...|.+|.+.+++...
T Consensus 328 tldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarr 403 (435)
T KOG0729|consen 328 TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARR 403 (435)
T ss_pred CcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987653
No 45
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=7.3e-37 Score=354.25 Aligned_cols=246 Identities=43% Similarity=0.784 Sum_probs=226.7
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchhhhc
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 562 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~ 562 (815)
..++|+|++|++++++++.+.+.+ ++.++.|..++...++|+||+||||||||++|+++|++++.+|+.++++++...|
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 468999999999999999988765 6788889999999999999999999999999999999999999999999999999
Q ss_pred cCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCCCCc
Q 003503 563 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDP 642 (815)
Q Consensus 563 ~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~ 642 (815)
+|.....++.+|+.|+...||||||||||.+...|+...+..+....+++++||.+||++....+++||+|||+++.+|+
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ 336 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDA 336 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhh
Confidence 99999999999999999999999999999999888765444455667899999999999988889999999999999999
Q ss_pred cccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003503 643 ALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIERER 722 (815)
Q Consensus 643 allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~ 722 (815)
|++||||||+.|+|++|+.++|.+||+.++++.++..++++..+|+.+.||||+||.++|++|+..|.++.
T Consensus 337 ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~--------- 407 (638)
T CHL00176 337 ALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRK--------- 407 (638)
T ss_pred hhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC---------
Confidence 99999999999999999999999999999999888889999999999999999999999999998887653
Q ss_pred hhcCCCcccccccccccccccHHHHHHHHhhc
Q 003503 723 RKRENPEAMEEDEVDDVAEIKAVHFEESMKYA 754 (815)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~ 754 (815)
...|+.+||+.|+..+
T Consensus 408 ----------------~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 408 ----------------KATITMKEIDTAIDRV 423 (638)
T ss_pred ----------------CCCcCHHHHHHHHHHH
Confidence 2369999999999876
No 46
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=5.6e-35 Score=322.43 Aligned_cols=246 Identities=43% Similarity=0.721 Sum_probs=223.9
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 003503 208 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS 287 (815)
Q Consensus 208 ~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 287 (815)
..++++|+||||++.+++.|++.+++|+.+|++|+.+|+.+++++||+||||||||++++++|++++.+++.+.+.++..
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCch---hHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCC
Q 003503 288 KLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTH---GEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI 364 (815)
Q Consensus 288 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~l 364 (815)
.+.|+.+..++.+|..+....|+||||||+|.++.++.... +....+++.+|+..++++....+++||++||+++.+
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~L 297 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 297 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhC
Confidence 99999999999999999999999999999999987764322 223346778888889988877889999999999999
Q ss_pred CHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhhHHHhhcCCCcHHHHHHHHHHHHHHhHHhhccccccc
Q 003503 365 DPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLE 444 (815)
Q Consensus 365 d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 444 (815)
|+++.|+|||++.|+++.|+.++|..||+.++.++.+..++++..++..++||+|+||.++|++|++.++++..
T Consensus 298 DpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~------ 371 (398)
T PTZ00454 298 DPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNR------ 371 (398)
T ss_pred CHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC------
Confidence 99999999999999999999999999999999999998899999999999999999999999999999887642
Q ss_pred ccchhhhhhccccccccccccccccc
Q 003503 445 DETIDAEVLNSMAVTNEHFQTALGTS 470 (815)
Q Consensus 445 ~~~~~~~~~~~~~v~~~~~~~al~~~ 470 (815)
..++.+||..|+..+
T Consensus 372 -----------~~i~~~df~~A~~~v 386 (398)
T PTZ00454 372 -----------YVILPKDFEKGYKTV 386 (398)
T ss_pred -----------CccCHHHHHHHHHHH
Confidence 347778888887665
No 47
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=2.8e-35 Score=345.48 Aligned_cols=248 Identities=42% Similarity=0.787 Sum_probs=226.0
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchhhhc
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 562 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~ 562 (815)
....|+++.|++..++.+.+.+.+ ...+..+..++...++|++|+||||||||+++++++++++.+|+.++++++...|
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~ 225 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhh
Confidence 356799999999999999998876 4556777778888899999999999999999999999999999999999999999
Q ss_pred cCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCCCCc
Q 003503 563 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDP 642 (815)
Q Consensus 563 ~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~ 642 (815)
+|.....++.+|+.|+...||||||||+|.++..|+...+.......+++++||.+||++....+++||+|||+|+.||+
T Consensus 226 ~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~ 305 (644)
T PRK10733 226 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDP 305 (644)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCH
Confidence 99999999999999999999999999999999988754444445567899999999999988889999999999999999
Q ss_pred cccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003503 643 ALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIERER 722 (815)
Q Consensus 643 allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~ 722 (815)
|++||||||+.|+|++||.++|.+||+.++++.++..++++..+|+.|.||||+||.++|++|+..|.++.
T Consensus 306 Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~--------- 376 (644)
T PRK10733 306 ALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN--------- 376 (644)
T ss_pred HHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcC---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999998653
Q ss_pred hhcCCCcccccccccccccccHHHHHHHHhhccC
Q 003503 723 RKRENPEAMEEDEVDDVAEIKAVHFEESMKYARR 756 (815)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~ 756 (815)
...|+.+||++|+..+..
T Consensus 377 ----------------~~~i~~~d~~~a~~~v~~ 394 (644)
T PRK10733 377 ----------------KRVVSMVEFEKAKDKIMM 394 (644)
T ss_pred ----------------CCcccHHHHHHHHHHHhc
Confidence 236999999999986643
No 48
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=4e-35 Score=353.36 Aligned_cols=197 Identities=20% Similarity=0.333 Sum_probs=169.2
Q ss_pred CCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchhhhc----------cC-------------
Q 003503 508 VEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW----------FG------------- 564 (815)
Q Consensus 508 ~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~----------~g------------- 564 (815)
...+....++|+.+++|+||+||||||||+||||+|++++.||+.|++++++.+| +|
T Consensus 1616 s~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~ 1695 (2281)
T CHL00206 1616 SHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDR 1695 (2281)
T ss_pred ccCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccccccccccccccccccccc
Confidence 3445566788999999999999999999999999999999999999999998765 22
Q ss_pred ------------------ccHH--HHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCC-
Q 003503 565 ------------------ESEA--NVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN- 623 (815)
Q Consensus 565 ------------------~se~--~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~- 623 (815)
+++. .++.+|+.|++++||||||||||+++... .....+++||++|++..
T Consensus 1696 ~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d---------s~~ltL~qLLneLDg~~~ 1766 (2281)
T CHL00206 1696 DLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE---------SNYLSLGLLVNSLSRDCE 1766 (2281)
T ss_pred ccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc---------cceehHHHHHHHhccccc
Confidence 2223 38999999999999999999999997541 11124899999999863
Q ss_pred --CCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHh--ccCCCCCc-ccHHHHHHHcCCCCHHHH
Q 003503 624 --AKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACL--RKSPISPD-VDLSALARYTHGFSGADI 698 (815)
Q Consensus 624 --~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l--~~~~~~~~-~~~~~la~~t~g~sg~di 698 (815)
...+|+||||||+|+.|||||+||||||+.|+++.|+..+|.+++...+ ++.++..+ +|+..+|+.|.|||||||
T Consensus 1767 ~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADL 1846 (2281)
T CHL00206 1767 RCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDL 1846 (2281)
T ss_pred cCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHH
Confidence 3568999999999999999999999999999999999999999998654 45556543 689999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 003503 699 TEVCQRACKYAIREN 713 (815)
Q Consensus 699 ~~l~~~a~~~a~~~~ 713 (815)
.++|++|++.|+++.
T Consensus 1847 anLvNEAaliAirq~ 1861 (2281)
T CHL00206 1847 VALTNEALSISITQK 1861 (2281)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999999865
No 49
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-35 Score=305.58 Aligned_cols=228 Identities=46% Similarity=0.755 Sum_probs=213.2
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhhHhhhC-CCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q 003503 210 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIG-VKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSK 288 (815)
Q Consensus 210 ~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~-i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~ 288 (815)
-.++|+||||++.+++++++.+-+|+++|++|..-+ ..+++||||+||||||||++|+++|++.++.|+.|.++.+.++
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~K 166 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSK 166 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchh
Confidence 467999999999999999999999999999996433 4689999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCc--EEEEEecCCCCCCCH
Q 003503 289 LAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH--VIVMGATNRPNSIDP 366 (815)
Q Consensus 289 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~--vivi~atn~~~~ld~ 366 (815)
|.|+.++.++.+|..|..-+|+||||||+|+++..|+....+.......++..+-||+.++.+ |+|+|+||+|.++|.
T Consensus 167 WfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDe 246 (386)
T KOG0737|consen 167 WFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDE 246 (386)
T ss_pred hHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHH
Confidence 999999999999999999999999999999999998666667778888999999999987655 999999999999999
Q ss_pred HhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhhHHHhhcCCCcHHHHHHHHHHHHHHhHHhhcc
Q 003503 367 ALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMD 439 (815)
Q Consensus 367 al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~ 439 (815)
++.| |+.+.++++.|+..+|..||+..+++..+.+++|+..++..|.||+|+||..+|+.|+...++....
T Consensus 247 AiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~ 317 (386)
T KOG0737|consen 247 AIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLV 317 (386)
T ss_pred HHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHH
Confidence 9999 9999999999999999999999999999999999999999999999999999999999988877554
No 50
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-36 Score=346.91 Aligned_cols=266 Identities=38% Similarity=0.683 Sum_probs=227.8
Q ss_pred cCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhC-----CcEEEEecc
Q 003503 482 VPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGP 556 (815)
Q Consensus 482 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~-----~~~i~v~~~ 556 (815)
...+.|++|||++.+..+|++++..|+.+|+.|..+++.+++|+||+||||||||++|+++|..+. ..|+.-+++
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 357899999999999999999999999999999999999999999999999999999999999984 457778999
Q ss_pred chhhhccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCC
Q 003503 557 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNR 636 (815)
Q Consensus 557 ~l~~~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~ 636 (815)
+.+++|+|+.++.++.+|+.|+...|+|+||||||-|++.|++.. ......++++||..|||+...+.|+||+||||
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskq---Eqih~SIvSTLLaLmdGldsRgqVvvigATnR 415 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQ---EQIHASIVSTLLALMDGLDSRGQVVVIGATNR 415 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchH---HHhhhhHHHHHHHhccCCCCCCceEEEcccCC
Confidence 999999999999999999999999999999999999999996543 34567799999999999999999999999999
Q ss_pred CCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 003503 637 PDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEVCQRACKYAIRENIE 715 (815)
Q Consensus 637 ~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~t~g~sg~di~~l~~~a~~~a~~~~~~ 715 (815)
|+.+|||+.||||||+.+|||+|+.+.|.+|+..+.++-.-. ...-+..||+.+.||-|+||+.+|.+|++.++++...
T Consensus 416 pda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~P 495 (1080)
T KOG0732|consen 416 PDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFP 495 (1080)
T ss_pred ccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccC
Confidence 999999999999999999999999999999999998875411 2233678999999999999999999999999987643
Q ss_pred HHHHHHHhhcCCCcccccccccccccccHHHHHHHHhhccCCCC
Q 003503 716 KDIERERRKRENPEAMEEDEVDDVAEIKAVHFEESMKYARRSVS 759 (815)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs 759 (815)
...... ... ..+.. ...|+.+||..|+....|+-.
T Consensus 496 q~y~s~-------~kl-~~d~~-~ikV~~~~f~~A~~~i~ps~~ 530 (1080)
T KOG0732|consen 496 QIYSSS-------DKL-LIDVA-LIKVEVRDFVEAMSRITPSSR 530 (1080)
T ss_pred eeeccc-------ccc-cccch-hhhhhhHhhhhhhhccCCCCC
Confidence 321100 000 00111 223888888888888766543
No 51
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-35 Score=293.84 Aligned_cols=228 Identities=39% Similarity=0.692 Sum_probs=210.7
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 003503 208 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS 287 (815)
Q Consensus 208 ~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 287 (815)
+-+.+.|+|+.|++..++.|+|.|.+|++.|++|.. +..|=++||||||||||||.||+++|.+.+..|+.|+.+++++
T Consensus 126 EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvS 204 (439)
T KOG0739|consen 126 EKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 204 (439)
T ss_pred cCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHH
Confidence 347899999999999999999999999999999975 3456789999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccC-CCcEEEEEecCCCCCCCH
Q 003503 288 KLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKS-RAHVIVMGATNRPNSIDP 366 (815)
Q Consensus 288 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~-~~~vivi~atn~~~~ld~ 366 (815)
+|.|++++.++.+|+-|+.+.|+||||||||.+|..++...++..+|+...++-.|.++.. ...|+|+++||-|+.+|.
T Consensus 205 KWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDs 284 (439)
T KOG0739|consen 205 KWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDS 284 (439)
T ss_pred HHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHH
Confidence 9999999999999999999999999999999999999988889999999999999998765 457999999999999999
Q ss_pred HhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcc-ccchhhhHHHhhcCCCcHHHHHHHHHHHHHHhHHhhc
Q 003503 367 ALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKM 438 (815)
Q Consensus 367 al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~ 438 (815)
++|| ||++.|++|.|+...|..+++.|+...+. ..+.|+.+++..|+||+|+||...++.|.++.+++..
T Consensus 285 AIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvq 355 (439)
T KOG0739|consen 285 AIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQ 355 (439)
T ss_pred HHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhh
Confidence 9999 99999999999999999999999877653 3567899999999999999999999999888877643
No 52
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-34 Score=326.68 Aligned_cols=229 Identities=46% Similarity=0.790 Sum_probs=214.6
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhh
Q 003503 210 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKL 289 (815)
Q Consensus 210 ~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~ 289 (815)
..++|.|+.|+++.+.+|.|+|.. |++|+.|..+|...|+|+||+||||||||.||+++|++.+.+|+.++|++++..+
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 458999999999999999999997 9999999999999999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHhcCCcEEEecccccccCCCC---C-chhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCC
Q 003503 290 AGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKRE---K-THGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID 365 (815)
Q Consensus 290 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~---~-~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld 365 (815)
.|....+++.+|+.++.+.|||+||||||.+...++ . ....-.....+||+..||++.....|+++++||+++.+|
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld 464 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILD 464 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccC
Confidence 999999999999999999999999999999998884 2 233445677899999999999999999999999999999
Q ss_pred HHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhhHHHhhcCCCcHHHHHHHHHHHHHHhHHhhcc
Q 003503 366 PALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMD 439 (815)
Q Consensus 366 ~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~ 439 (815)
++|.|+||||+.+.+..|+..+|.+|++.|.+...+. +++++..++..|+||+|+||..+|.+|++.+.++...
T Consensus 465 ~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~ 539 (774)
T KOG0731|consen 465 PALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLR 539 (774)
T ss_pred HHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccC
Confidence 9999999999999999999999999999999999885 7788999999999999999999999999999886543
No 53
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=1.6e-33 Score=295.95 Aligned_cols=219 Identities=20% Similarity=0.255 Sum_probs=174.7
Q ss_pred ccccc-cccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchhhhccC
Q 003503 486 SWEDI-GGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 564 (815)
Q Consensus 486 ~~~~i-~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~~g 564 (815)
+|+++ ||+.-.+.-+.+.+....+ ..+...++++|.+++||||||||||++|+++|++++.+|+.++++++.++|+|
T Consensus 113 ~f~~~~g~~~~~p~f~dk~~~hi~k--n~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vG 190 (413)
T PLN00020 113 SFDNLVGGYYIAPAFMDKVAVHIAK--NFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAG 190 (413)
T ss_pred chhhhcCccccCHHHHHHHHHHHHh--hhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCC
Confidence 45555 5665555544443322111 12233578999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhh-----CCCeEEEEecchhhhhccCCCCCCCCchHHHHH-HHHHhccccC------------CCCC
Q 003503 565 ESEANVREIFDKARQ-----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVL-NQLLTEMDGM------------NAKK 626 (815)
Q Consensus 565 ~se~~i~~~F~~a~~-----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl-~~lL~~ld~~------------~~~~ 626 (815)
++|+++|++|+.|+. ..||||||||||++++.|+... ....++++ .+||++||+. ....
T Consensus 191 EsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~---~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~ 267 (413)
T PLN00020 191 EPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQ---YTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIP 267 (413)
T ss_pred cHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCC---cchHHHHHHHHHHHHhcCCccccccccccccccCC
Confidence 999999999999975 4699999999999999986322 23445555 8999999863 2356
Q ss_pred cEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCC----CCHHHHHHHH
Q 003503 627 TVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHG----FSGADITEVC 702 (815)
Q Consensus 627 ~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g----~sg~di~~l~ 702 (815)
+|+||+|||+|+.|||+|+||||||+.+ ..|+.++|.+||+.++++.+++ .+|+..|++.+.| |+||--..+.
T Consensus 268 ~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~y 344 (413)
T PLN00020 268 RVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVY 344 (413)
T ss_pred CceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHH
Confidence 7999999999999999999999999965 5899999999999999998887 4788888888766 6676656666
Q ss_pred HHHHHHHHHH
Q 003503 703 QRACKYAIRE 712 (815)
Q Consensus 703 ~~a~~~a~~~ 712 (815)
.++....+.+
T Consensus 345 d~~v~~~i~~ 354 (413)
T PLN00020 345 DDEVRKWIAE 354 (413)
T ss_pred HHHHHHHHHH
Confidence 6655555444
No 54
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.2e-33 Score=339.15 Aligned_cols=267 Identities=49% Similarity=0.840 Sum_probs=236.5
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q 003503 209 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSK 288 (815)
Q Consensus 209 ~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~ 288 (815)
.+.++|++|||++..++.|++.+.+|+.+++++..+++.+++++|||||||||||++|+++|++++.+++.++++++.++
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCc-hhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHH
Q 003503 289 LAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKT-HGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA 367 (815)
Q Consensus 289 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~-~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~a 367 (815)
|.|+++..++.+|+.+....|+||||||+|.+++.++.. ......+++++|+..|+++....+++||++||+++.+|++
T Consensus 527 ~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~a 606 (733)
T TIGR01243 527 WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPA 606 (733)
T ss_pred ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHh
Confidence 999999999999999999999999999999999887643 2346688999999999999888899999999999999999
Q ss_pred hhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhhHHHhhcCCCcHHHHHHHHHHHHHHhHHhhcccccccc-c
Q 003503 368 LRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLED-E 446 (815)
Q Consensus 368 l~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~-~ 446 (815)
+.|+|||++.++++.|+.++|.+||+.+.+++++..++++..++..++||+|+|+..+|++|++.++++......... .
T Consensus 607 llRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~ 686 (733)
T TIGR01243 607 LLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLE 686 (733)
T ss_pred hcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhh
Confidence 999999999999999999999999999999999988999999999999999999999999999998886543221000 0
Q ss_pred chhhhhhcccccccccccccccccCCCcc
Q 003503 447 TIDAEVLNSMAVTNEHFQTALGTSNPSAL 475 (815)
Q Consensus 447 ~~~~~~~~~~~v~~~~~~~al~~~~p~~~ 475 (815)
....+......++.+||..++..+.|+..
T Consensus 687 ~~~~~~~~~~~i~~~~f~~al~~~~ps~~ 715 (733)
T TIGR01243 687 VGEEEFLKDLKVEMRHFLEALKKVKPSVS 715 (733)
T ss_pred cccccccccCcccHHHHHHHHHHcCCCCC
Confidence 00001122356889999999998887743
No 55
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=1.5e-33 Score=312.53 Aligned_cols=246 Identities=48% Similarity=0.780 Sum_probs=221.3
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 003503 208 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS 287 (815)
Q Consensus 208 ~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 287 (815)
+.+.++|+||||++++++.|++++++|+.+|++++++|+.++.++|||||||||||++|+++|++++..++.+.++++.+
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchh---HHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCC
Q 003503 288 KLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHG---EVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI 364 (815)
Q Consensus 288 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~l 364 (815)
.+.|+....++.+|..+....|+|+||||+|.++.++....+ ....+.+.+|+..++++.....+.||++||+++.+
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~L 335 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESL 335 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHh
Confidence 999999999999999999999999999999999877643221 12234556778888888777789999999999999
Q ss_pred CHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhhHHHhhcCCCcHHHHHHHHHHHHHHhHHhhccccccc
Q 003503 365 DPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLE 444 (815)
Q Consensus 365 d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 444 (815)
|+++.|+|||++.|+++.|+.++|.+||+.++.++.+..++++..++..++||+|+|+..+|.+|++.++++..
T Consensus 336 DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r------ 409 (438)
T PTZ00361 336 DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERR------ 409 (438)
T ss_pred hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcC------
Confidence 99999999999999999999999999999999999998899999999999999999999999999999987642
Q ss_pred ccchhhhhhccccccccccccccccc
Q 003503 445 DETIDAEVLNSMAVTNEHFQTALGTS 470 (815)
Q Consensus 445 ~~~~~~~~~~~~~v~~~~~~~al~~~ 470 (815)
..++.+||..|+..+
T Consensus 410 -----------~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 410 -----------MKVTQADFRKAKEKV 424 (438)
T ss_pred -----------CccCHHHHHHHHHHH
Confidence 346777888776654
No 56
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=3.2e-33 Score=310.49 Aligned_cols=250 Identities=50% Similarity=0.828 Sum_probs=224.6
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 003503 208 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS 287 (815)
Q Consensus 208 ~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 287 (815)
..++++|++|||++++++.+++.+.+|+.+|++|+.+|+.++++|||+||||||||++|+++|+.++.+++.+++.++..
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCch---hHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCC
Q 003503 288 KLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTH---GEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI 364 (815)
Q Consensus 288 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~l 364 (815)
.+.|+.+..++.+|+.+....|++|||||+|.++..+.... .....+.+.+++..++++....++.||++||+++.+
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~l 283 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDIL 283 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhC
Confidence 99999999999999999999999999999999987765322 112244556777778888777889999999999999
Q ss_pred CHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhhHHHhhcCCCcHHHHHHHHHHHHHHhHHhhccccccc
Q 003503 365 DPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLE 444 (815)
Q Consensus 365 d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 444 (815)
|+++.|+|||++.++++.|+.++|.+||+.+++++.+..+.++..++..|+||+|+|+..+|++|++.++++.
T Consensus 284 d~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~------- 356 (389)
T PRK03992 284 DPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD------- 356 (389)
T ss_pred CHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-------
Confidence 9999999999999999999999999999999999998888999999999999999999999999999888753
Q ss_pred ccchhhhhhcccccccccccccccccCCCc
Q 003503 445 DETIDAEVLNSMAVTNEHFQTALGTSNPSA 474 (815)
Q Consensus 445 ~~~~~~~~~~~~~v~~~~~~~al~~~~p~~ 474 (815)
...++.+||..|+..+.++.
T Consensus 357 ----------~~~i~~~d~~~A~~~~~~~~ 376 (389)
T PRK03992 357 ----------RTEVTMEDFLKAIEKVMGKE 376 (389)
T ss_pred ----------CCCcCHHHHHHHHHHHhccc
Confidence 23478889999888876654
No 57
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-33 Score=321.14 Aligned_cols=249 Identities=51% Similarity=0.833 Sum_probs=232.1
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q 003503 209 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSK 288 (815)
Q Consensus 209 ~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~ 288 (815)
.+.++|+++||++..++.+++.+.+|+.+++.|...++.++.++|||||||||||+||+++|.+++.+|+.+.+++++++
T Consensus 236 ~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk 315 (494)
T COG0464 236 DEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK 315 (494)
T ss_pred CCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHh
Q 003503 289 LAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPAL 368 (815)
Q Consensus 289 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~al 368 (815)
|.|+++++++.+|+.|+...||||||||+|.+++.++...+....+++.+|+..|+++.....|+||++||+++.+|+++
T Consensus 316 ~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~ 395 (494)
T COG0464 316 WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPAL 395 (494)
T ss_pred ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhh
Confidence 99999999999999999999999999999999999987666666899999999999999999999999999999999999
Q ss_pred hccCCcceEEEcCCCCHHHHHHHHHHHhcCCc--cccchhhhHHHhhcCCCcHHHHHHHHHHHHHHhHHhhccccccccc
Q 003503 369 RRFGRFDREIDIGVPDEVGRLEILRIHTKNMK--LAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLEDE 446 (815)
Q Consensus 369 ~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~--l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~ 446 (815)
.|+|||+..++++.|+..+|.+|++.+++... +..++++..++..+.||+|+|+..+|++|.+.++++..
T Consensus 396 lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~-------- 467 (494)
T COG0464 396 LRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR-------- 467 (494)
T ss_pred cccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc--------
Confidence 99999999999999999999999999998554 46789999999999999999999999999999887652
Q ss_pred chhhhhhcccccccccccccccccCCC
Q 003503 447 TIDAEVLNSMAVTNEHFQTALGTSNPS 473 (815)
Q Consensus 447 ~~~~~~~~~~~v~~~~~~~al~~~~p~ 473 (815)
...++..||..++....|+
T Consensus 468 --------~~~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 468 --------RREVTLDDFLDALKKIKPS 486 (494)
T ss_pred --------cCCccHHHHHHHHHhcCCC
Confidence 2347888999998887665
No 58
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=1e-31 Score=321.33 Aligned_cols=437 Identities=24% Similarity=0.351 Sum_probs=295.9
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEEE
Q 003503 210 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFL 279 (815)
Q Consensus 210 ~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l----------~~~~i~ 279 (815)
.+-.++++.|.++++.++.+++.. ....+++|+||||||||++++.||..+ +..++.
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 455778899999999887766543 235689999999999999999999987 677889
Q ss_pred Eechhhh--hhhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEe
Q 003503 280 INGPEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGA 357 (815)
Q Consensus 280 v~~~~l~--~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~a 357 (815)
++...+. .++.|+.+++++.+|+.+....++||||||+|.+...+....+..+ +.+.|...+ .++.+.+||+
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~--~~~~L~~~l----~~g~i~~Iga 317 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMD--ASNLLKPAL----SSGKLRCIGS 317 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHH--HHHHHHHHH----hCCCeEEEEe
Confidence 9988877 4788999999999999998778899999999999876543222221 223344433 3567999999
Q ss_pred cCCCC-----CCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCC----cc-ccchhhhHHHhhcCCCcHHH-----H
Q 003503 358 TNRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNM----KL-AEDVDLERVAKDTHGYVGSD-----L 422 (815)
Q Consensus 358 tn~~~-----~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~----~l-~~~~~l~~la~~t~g~~~~d-----l 422 (815)
|+..+ ..|+++.| ||. .++++.|+.+++.+||+.....+ .+ ..+..+..++..++.|.+.. .
T Consensus 318 Tt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~ka 394 (731)
T TIGR02639 318 TTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKA 394 (731)
T ss_pred cCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHH
Confidence 98633 56999998 895 69999999999999999654432 11 23445677777777775432 2
Q ss_pred HHHHHHHHHHhHHhhcccccccccchhhhhhcccccccccccccccccCCCcccccccccCCccccc-------------
Q 003503 423 AALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWED------------- 489 (815)
Q Consensus 423 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~p~~~~~~~~~~~~~~~~~------------- 489 (815)
..++++|+....-+... .....++.+++...+..... +....+.+++
T Consensus 395 i~lld~a~a~~~~~~~~-------------~~~~~v~~~~i~~~i~~~tg-------iP~~~~~~~~~~~l~~l~~~l~~ 454 (731)
T TIGR02639 395 IDVIDEAGASFRLRPKA-------------KKKANVSVKDIENVVAKMAH-------IPVKTVSVDDREKLKNLEKNLKA 454 (731)
T ss_pred HHHHHHhhhhhhcCccc-------------ccccccCHHHHHHHHHHHhC-------CChhhhhhHHHHHHHHHHHHHhc
Confidence 34455554321100000 01123455555554443210 0111233333
Q ss_pred -ccccchhhhhhhccccCCCCChhhhhhhcCC----CCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchhh----
Q 003503 490 -IGGLDNVKRELQETVQYPVEHPEKFEKFGMS----PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT---- 560 (815)
Q Consensus 490 -i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~----~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~~---- 560 (815)
|.|++++.+.+.+.+.. .+.|+. |...+||+||||||||++|+++|..++.+++.++++++..
T Consensus 455 ~v~GQ~~ai~~l~~~i~~--------~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~ 526 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKR--------SRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTV 526 (731)
T ss_pred ceeCcHHHHHHHHHHHHH--------HhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccH
Confidence 44555554444443321 122332 2234899999999999999999999999999999988643
Q ss_pred -h-------ccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCC---------
Q 003503 561 -M-------WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN--------- 623 (815)
Q Consensus 561 -~-------~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~--------- 623 (815)
+ |+|..+ .+.+.+..+..+.+|+||||||.+. ..+.+.||+.||...
T Consensus 527 ~~lig~~~gyvg~~~--~~~l~~~~~~~p~~VvllDEieka~--------------~~~~~~Ll~~ld~g~~~d~~g~~v 590 (731)
T TIGR02639 527 SRLIGAPPGYVGFEQ--GGLLTEAVRKHPHCVLLLDEIEKAH--------------PDIYNILLQVMDYATLTDNNGRKA 590 (731)
T ss_pred HHHhcCCCCCcccch--hhHHHHHHHhCCCeEEEEechhhcC--------------HHHHHHHHHhhccCeeecCCCccc
Confidence 2 333221 2345556667788999999999862 347788888887541
Q ss_pred CCCcEEEEEecCCCC-------------------------CCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccC---
Q 003503 624 AKKTVFIIGATNRPD-------------------------IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS--- 675 (815)
Q Consensus 624 ~~~~v~vi~aTn~~~-------------------------~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~--- 675 (815)
+..+++||+|||... .+.|.|+. |||.+|.|.+.+.++..+|++..+++.
T Consensus 591 d~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~ 668 (731)
T TIGR02639 591 DFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQ 668 (731)
T ss_pred CCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 134688999998742 24667775 999999999999999999999887532
Q ss_pred ----CCCC---cccHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHH
Q 003503 676 ----PISP---DVDLSALARY--THGFSGADITEVCQRACKYAIRENI 714 (815)
Q Consensus 676 ----~~~~---~~~~~~la~~--t~g~sg~di~~l~~~a~~~a~~~~~ 714 (815)
++.- +.-++.|++. ...|..+.|+.+++.....++.+.+
T Consensus 669 l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~ 716 (731)
T TIGR02639 669 LNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEI 716 (731)
T ss_pred HHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHH
Confidence 1221 1224556653 3456677888888888877776654
No 59
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-32 Score=305.63 Aligned_cols=230 Identities=47% Similarity=0.783 Sum_probs=216.4
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q 003503 209 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSK 288 (815)
Q Consensus 209 ~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~ 288 (815)
...++|.|+.|.++.++.+.|+|+. ++.|..|..+|..-|+||||+||||||||+|||++|++.+.+|+.++|++++..
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 3568999999999999999999997 899999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCc---hhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCC
Q 003503 289 LAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID 365 (815)
Q Consensus 289 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld 365 (815)
++|....++|.+|.++.++.|||+||||||++...++.. ..+..+...+||+..||++..+..|+++++||+|+-+|
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 999999999999999999999999999999999888633 23445578899999999999888999999999999999
Q ss_pred HHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhhHHHhhcCCCcHHHHHHHHHHHHHHhHHhhcc
Q 003503 366 PALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMD 439 (815)
Q Consensus 366 ~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~ 439 (815)
++|.|+|||++++.++.||...|.+|++.|.++.++..++++..+++.|.||+|+|+..++.+|++.+.++...
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~ 376 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKK 376 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999988876543
No 60
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.98 E-value=9e-31 Score=308.45 Aligned_cols=448 Identities=21% Similarity=0.304 Sum_probs=291.2
Q ss_pred CCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEEEEe
Q 003503 212 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFLIN 281 (815)
Q Consensus 212 ~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l----------~~~~i~v~ 281 (815)
=.++.+.|-++.+.++.+++.. ....++||+||||||||++++.++..+ +..++.++
T Consensus 183 g~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 183 GGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 3567789999998888776653 235678999999999999999999864 34456666
Q ss_pred chhhh--hhhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecC
Q 003503 282 GPEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATN 359 (815)
Q Consensus 282 ~~~l~--~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn 359 (815)
...+. ..+.|+.+.+++.+|..+....++||||||+|.++..+....+.. .+.+.|..+ ..++.+.+|++|+
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~--d~~nlLkp~----L~~g~i~vIgATt 323 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQV--DAANLIKPL----LSSGKIRVIGSTT 323 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHH--HHHHHHHHH----HhCCCeEEEecCC
Confidence 55555 357789999999999998888889999999999987764322222 122223333 3467899999999
Q ss_pred CCC-----CCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchh-----hhHHHhhcCCC-----cHHHHHH
Q 003503 360 RPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVD-----LERVAKDTHGY-----VGSDLAA 424 (815)
Q Consensus 360 ~~~-----~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~-----l~~la~~t~g~-----~~~dl~~ 424 (815)
..+ ..|++|.| ||. .|.++.|+.+++..||+.+...+....++. +...+..+..| .+.....
T Consensus 324 ~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaid 400 (758)
T PRK11034 324 YQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAID 400 (758)
T ss_pred hHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHH
Confidence 764 56999998 995 799999999999999998766554433332 33334434443 3445666
Q ss_pred HHHHHHHHhHHhhcccccccccchhhhhhcccccccccccccccccC--CCc-cc----ccccccCCcccccccccchhh
Q 003503 425 LCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGTSN--PSA-LR----ETVVEVPNVSWEDIGGLDNVK 497 (815)
Q Consensus 425 l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~--p~~-~~----~~~~~~~~~~~~~i~g~~~~k 497 (815)
++.+|+......... . ....++..++...+.... |.. +. +........--..|.|++++.
T Consensus 401 lldea~a~~~~~~~~-----~--------~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai 467 (758)
T PRK11034 401 VIDEAGARARLMPVS-----K--------RKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAI 467 (758)
T ss_pred HHHHHHHhhccCccc-----c--------cccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHH
Confidence 777776532110000 0 011133333333222111 000 00 000111111123477888888
Q ss_pred hhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchh-----hhccCccHHH---
Q 003503 498 RELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-----TMWFGESEAN--- 569 (815)
Q Consensus 498 ~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~-----~~~~g~se~~--- 569 (815)
+.|.+.+...... +.. .-+|...+||+||||||||++|+++|..++.+|+.++++++. ++++|.....
T Consensus 468 ~~l~~~i~~~~~g---l~~-~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~ 543 (758)
T PRK11034 468 EALTEAIKMSRAG---LGH-EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGF 543 (758)
T ss_pred HHHHHHHHHHhcc---ccC-CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccc
Confidence 8887766532110 000 112334599999999999999999999999999999988764 2333332111
Q ss_pred --HHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCC---------CCCcEEEEEecCCC-
Q 003503 570 --VREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN---------AKKTVFIIGATNRP- 637 (815)
Q Consensus 570 --i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~---------~~~~v~vi~aTn~~- 637 (815)
-+.+.+..+..+.+|+||||||.+. ..+.+.||+.||... ...+++||+|||.-
T Consensus 544 ~~~g~L~~~v~~~p~sVlllDEieka~--------------~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~ 609 (758)
T PRK11034 544 DQGGLLTDAVIKHPHAVLLLDEIEKAH--------------PDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGV 609 (758)
T ss_pred cccchHHHHHHhCCCcEEEeccHhhhh--------------HHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCH
Confidence 1234444566677999999999973 347788888887431 12578999999932
Q ss_pred ------------------------CCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhcc-------CCCCCccc---H
Q 003503 638 ------------------------DIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRK-------SPISPDVD---L 683 (815)
Q Consensus 638 ------------------------~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~-------~~~~~~~~---~ 683 (815)
..+.|.|+. |+|.+|.|++.+.++..+|+...+.+ .++.-.++ +
T Consensus 610 ~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~ 687 (758)
T PRK11034 610 RETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEAR 687 (758)
T ss_pred HHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHH
Confidence 125677876 99999999999999999999877642 23332222 3
Q ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH
Q 003503 684 SALARYT--HGFSGADITEVCQRACKYAIRENI 714 (815)
Q Consensus 684 ~~la~~t--~g~sg~di~~l~~~a~~~a~~~~~ 714 (815)
+.|++.. ..|-.+.|+.++++-....+.+.+
T Consensus 688 ~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~i 720 (758)
T PRK11034 688 DWLAEKGYDRAMGARPMARVIQDNLKKPLANEL 720 (758)
T ss_pred HHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 4555432 334467888888888877776654
No 61
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.97 E-value=1.7e-30 Score=287.77 Aligned_cols=245 Identities=53% Similarity=0.862 Sum_probs=216.4
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 003503 208 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS 287 (815)
Q Consensus 208 ~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 287 (815)
..+.++|++++|++++++.|++.+.+|+.+|+.+..+|+.+++++||+||||||||++|+++++.++..++.+.+.++..
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchh---HHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCC
Q 003503 288 KLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHG---EVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI 364 (815)
Q Consensus 288 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~l 364 (815)
.+.|+....++.+|+.+....|++|||||+|.+...+..... ....+.+.+++..++++....++.||++||+++.+
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~l 274 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDIL 274 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhC
Confidence 999998899999999999999999999999999876543221 12234456677777777667789999999999999
Q ss_pred CHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhhHHHhhcCCCcHHHHHHHHHHHHHHhHHhhccccccc
Q 003503 365 DPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLE 444 (815)
Q Consensus 365 d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 444 (815)
|+++.+++||++.++++.|+.++|.+|++.+...+.+..+.++..++..++||+|+|+..+|++|++.++++..
T Consensus 275 d~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~------ 348 (364)
T TIGR01242 275 DPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREER------ 348 (364)
T ss_pred ChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC------
Confidence 99999999999999999999999999999999998888888999999999999999999999999999887642
Q ss_pred ccchhhhhhcccccccccccccccc
Q 003503 445 DETIDAEVLNSMAVTNEHFQTALGT 469 (815)
Q Consensus 445 ~~~~~~~~~~~~~v~~~~~~~al~~ 469 (815)
..++.+||.+|+..
T Consensus 349 -----------~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 349 -----------DYVTMDDFIKAVEK 362 (364)
T ss_pred -----------CccCHHHHHHHHHH
Confidence 24667777766543
No 62
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.97 E-value=9.5e-31 Score=294.55 Aligned_cols=242 Identities=24% Similarity=0.402 Sum_probs=209.5
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhh
Q 003503 210 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKL 289 (815)
Q Consensus 210 ~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~ 289 (815)
+.++|++|||++..++.+++.... +.....++|+.++++||||||||||||++|+++|++++.+++.+++..+.+.+
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 467899999999999888765432 23445678999999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCC-chhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHh
Q 003503 290 AGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREK-THGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPAL 368 (815)
Q Consensus 290 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~-~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~al 368 (815)
.|+++.+++.+|+.+....||||||||||.++.++.. ..+....++..+++++|+.. ..+|+||+|||+++.+|+++
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~--~~~V~vIaTTN~~~~Ld~al 377 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK--KSPVFVVATANNIDLLPLEI 377 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC--CCceEEEEecCChhhCCHHH
Confidence 9999999999999999999999999999998875432 23445678888999988753 45799999999999999999
Q ss_pred hccCCcceEEEcCCCCHHHHHHHHHHHhcCCcc--ccchhhhHHHhhcCCCcHHHHHHHHHHHHHHhHHhhccccccccc
Q 003503 369 RRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL--AEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLEDE 446 (815)
Q Consensus 369 ~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l--~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~ 446 (815)
.|+|||++.++++.|+.++|.+||+.++++... ..+.++..++..|+||+|+||.++|.+|...+..+.
T Consensus 378 lR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~--------- 448 (489)
T CHL00195 378 LRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK--------- 448 (489)
T ss_pred hCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC---------
Confidence 999999999999999999999999999887643 246789999999999999999999999988776432
Q ss_pred chhhhhhcccccccccccccccccCCCc
Q 003503 447 TIDAEVLNSMAVTNEHFQTALGTSNPSA 474 (815)
Q Consensus 447 ~~~~~~~~~~~v~~~~~~~al~~~~p~~ 474 (815)
..++.+|+..++..+.|.+
T Consensus 449 ---------~~lt~~dl~~a~~~~~Pls 467 (489)
T CHL00195 449 ---------REFTTDDILLALKQFIPLA 467 (489)
T ss_pred ---------CCcCHHHHHHHHHhcCCCc
Confidence 2367889999999888864
No 63
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.4e-31 Score=270.27 Aligned_cols=231 Identities=42% Similarity=0.757 Sum_probs=208.9
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM 286 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~ 286 (815)
+.+.+++|+++||+-.++..+++.+++|+..|++|..+||.+|.+++||||||+|||.+|+++|..++..++.+..+.+.
T Consensus 124 e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv 203 (388)
T KOG0651|consen 124 EDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALV 203 (388)
T ss_pred cCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhh
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHH---HHHHHhhhcccCCCcEEEEEecCCCCC
Q 003503 287 SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIV---SQLLTLMDGLKSRAHVIVMGATNRPNS 363 (815)
Q Consensus 287 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~---~~Ll~~ld~~~~~~~vivi~atn~~~~ 363 (815)
++|.|++...+|..|..|....||++|+||||++...+.......++.+. -.|++.|+++....+|-+|.|||+|+.
T Consensus 204 ~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdt 283 (388)
T KOG0651|consen 204 DKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDT 283 (388)
T ss_pred hhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccc
Confidence 99999999999999999999999999999999998876433222333344 445556677777889999999999999
Q ss_pred CCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhhHHHhhcCCCcHHHHHHHHHHHHHHhHHhh
Q 003503 364 IDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREK 437 (815)
Q Consensus 364 ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~ 437 (815)
++|+|.|+||+++.+++|.|++..|..|++.|...+......+.+.+.+..+||.|+|+...|.+|.+.+++..
T Consensus 284 LdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~ 357 (388)
T KOG0651|consen 284 LDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEE 357 (388)
T ss_pred cchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchh
Confidence 99999999999999999999999999999999988888788889999999999999999999999987666543
No 64
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=1.7e-30 Score=298.76 Aligned_cols=244 Identities=45% Similarity=0.750 Sum_probs=218.5
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q 003503 209 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSK 288 (815)
Q Consensus 209 ~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~ 288 (815)
.+.++|+|++|++.+++.+++++.. +.+++.+.+++..+++++||+||||||||++++++|++++.+++.+++.++.+.
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 127 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH
Confidence 4678999999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCc---hhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCC
Q 003503 289 LAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID 365 (815)
Q Consensus 289 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld 365 (815)
+.|.....++.+|+.+....|+||||||+|.+..+++.. ......+++++|+..|+++.....++||++||+++.+|
T Consensus 128 ~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld 207 (495)
T TIGR01241 128 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLD 207 (495)
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcC
Confidence 999999999999999999999999999999999876542 12334577889999999998888999999999999999
Q ss_pred HHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhhHHHhhcCCCcHHHHHHHHHHHHHHhHHhhcccccccc
Q 003503 366 PALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLED 445 (815)
Q Consensus 366 ~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~ 445 (815)
++++|++||++.++++.|+.++|.+|++.+++...+..+.++..++..+.||+++|+..+|++|+..+.++..
T Consensus 208 ~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~------- 280 (495)
T TIGR01241 208 PALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNK------- 280 (495)
T ss_pred HHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC-------
Confidence 9999999999999999999999999999999888877788899999999999999999999999887665431
Q ss_pred cchhhhhhccccccccccccccccc
Q 003503 446 ETIDAEVLNSMAVTNEHFQTALGTS 470 (815)
Q Consensus 446 ~~~~~~~~~~~~v~~~~~~~al~~~ 470 (815)
..++.+++..++...
T Consensus 281 ----------~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 281 ----------TEITMNDIEEAIDRV 295 (495)
T ss_pred ----------CCCCHHHHHHHHHHH
Confidence 235667777776654
No 65
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=4.5e-30 Score=288.23 Aligned_cols=222 Identities=43% Similarity=0.715 Sum_probs=195.6
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe----------
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 276 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~---------- 276 (815)
+..++++|++|||++++++++++.+.+|+.||++|..+|+.+++++|||||||||||++++++|++++..
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 3457899999999999999999999999999999999999999999999999999999999999998543
Q ss_pred EEEEechhhhhhhhchhHHHHHHHHHHHHhc----CCcEEEecccccccCCCCCc-hhHHHHHHHHHHHHhhhcccCCCc
Q 003503 277 FFLINGPEIMSKLAGESESNLRKAFEEAEKN----APSIIFIDELDSIAPKREKT-HGEVERRIVSQLLTLMDGLKSRAH 351 (815)
Q Consensus 277 ~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~----~p~il~iDEid~l~~~~~~~-~~~~~~~v~~~Ll~~ld~~~~~~~ 351 (815)
++.+.++++.+++.|+++..++.+|+.+... .|+|+||||+|.++.+++.. .++.+.+++.+|++.|+++....+
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ 333 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDN 333 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCc
Confidence 5667788899999999999999999988763 69999999999999887643 346678889999999999988889
Q ss_pred EEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcC-CccccchhhhHHHhhcCCCcHHHHHHHHHHHH
Q 003503 352 VIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKN-MKLAEDVDLERVAKDTHGYVGSDLAALCTEAA 430 (815)
Q Consensus 352 vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~-~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~ 430 (815)
++||++||+++.||+++.|+|||+..|+++.|+.++|.+||+.++.. +++ + .....+.|+.++++..+++++.
T Consensus 334 ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l--~----~~l~~~~g~~~a~~~al~~~av 407 (512)
T TIGR03689 334 VIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPL--D----ADLAEFDGDREATAAALIQRAV 407 (512)
T ss_pred eEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCc--h----HHHHHhcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988754 343 1 2234578999999999999886
Q ss_pred HHhH
Q 003503 431 LQCI 434 (815)
Q Consensus 431 ~~~~ 434 (815)
...+
T Consensus 408 ~~~~ 411 (512)
T TIGR03689 408 DHLY 411 (512)
T ss_pred HHHh
Confidence 5444
No 66
>CHL00176 ftsH cell division protein; Validated
Probab=99.96 E-value=2.5e-29 Score=291.56 Aligned_cols=243 Identities=41% Similarity=0.728 Sum_probs=215.4
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhh
Q 003503 210 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKL 289 (815)
Q Consensus 210 ~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~ 289 (815)
..++|+|++|+++.++.+.+++.. +.+++.+..++...+++|||+||||||||++|+++|++.+.+++.++++++...+
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 468999999999999999999886 8889999999999999999999999999999999999999999999999998888
Q ss_pred hchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCc---hhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCH
Q 003503 290 AGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDP 366 (815)
Q Consensus 290 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~ 366 (815)
.|.....++.+|+.+....||||||||+|.+...++.. .......++.+|+..|+++..+.+++||++||+++.+|+
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ 336 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDA 336 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhh
Confidence 88888899999999999999999999999998776432 223345677889999999888889999999999999999
Q ss_pred HhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhhHHHhhcCCCcHHHHHHHHHHHHHHhHHhhccccccccc
Q 003503 367 ALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLEDE 446 (815)
Q Consensus 367 al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~ 446 (815)
++.|+|||++.+.++.|+.++|.+||+.++++..+..+.++..++..+.||+++||..++.+|++.+.++..
T Consensus 337 ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~-------- 408 (638)
T CHL00176 337 ALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKK-------- 408 (638)
T ss_pred hhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC--------
Confidence 999999999999999999999999999999887777888999999999999999999999999887765432
Q ss_pred chhhhhhccccccccccccccccc
Q 003503 447 TIDAEVLNSMAVTNEHFQTALGTS 470 (815)
Q Consensus 447 ~~~~~~~~~~~v~~~~~~~al~~~ 470 (815)
..++.+++..++..+
T Consensus 409 ---------~~It~~dl~~Ai~rv 423 (638)
T CHL00176 409 ---------ATITMKEIDTAIDRV 423 (638)
T ss_pred ---------CCcCHHHHHHHHHHH
Confidence 235666777666543
No 67
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.9e-29 Score=268.20 Aligned_cols=260 Identities=41% Similarity=0.660 Sum_probs=219.1
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 003503 208 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS 287 (815)
Q Consensus 208 ~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 287 (815)
..+++.|+|++|++..++.+.+++.+|+.+|.+|..+. .+.+++||.||||+|||+|+++||.+.++.|+.+.++.+.+
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 45689999999999999999999999999999998764 56789999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhccc--CCCcEEEEEecCCCCCCC
Q 003503 288 KLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK--SRAHVIVMGATNRPNSID 365 (815)
Q Consensus 288 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--~~~~vivi~atn~~~~ld 365 (815)
+|.|+.+..++.+|+-|+..+|+|+||||+|.++..+.....+..+++..+++-.+++.. ...+|+|+||||.|+.+|
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~D 304 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELD 304 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHH
Confidence 999999999999999999999999999999999999865556677788777766666544 356899999999999999
Q ss_pred HHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCC-ccccchhhhHHHhhcCCCcHHHHHHHHHHHHHHhHHhhccccccc
Q 003503 366 PALRRFGRFDREIDIGVPDEVGRLEILRIHTKNM-KLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLE 444 (815)
Q Consensus 366 ~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~-~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 444 (815)
.+++| ||.+.++++.|+.+.|..+|+.++... ....+.++..+++.|+||++.|+.++|++|++..++.......+.
T Consensus 305 ea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~~ 382 (428)
T KOG0740|consen 305 EAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDLE 382 (428)
T ss_pred HHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchhhh
Confidence 99999 999999999999999999999887665 333457899999999999999999999999987766543320110
Q ss_pred ccchhhhhhcccccccccccccccccCCCc
Q 003503 445 DETIDAEVLNSMAVTNEHFQTALGTSNPSA 474 (815)
Q Consensus 445 ~~~~~~~~~~~~~v~~~~~~~al~~~~p~~ 474 (815)
.+ .......++..+|..++..+.|+.
T Consensus 383 --~~--~~~~~r~i~~~df~~a~~~i~~~~ 408 (428)
T KOG0740|consen 383 --FI--DADKIRPITYPDFKNAFKNIKPSV 408 (428)
T ss_pred --hc--chhccCCCCcchHHHHHHhhcccc
Confidence 01 112234566677777777666553
No 68
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.96 E-value=9.1e-27 Score=280.09 Aligned_cols=456 Identities=21% Similarity=0.319 Sum_probs=276.2
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC----------CeEE
Q 003503 209 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG----------AFFF 278 (815)
Q Consensus 209 ~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~----------~~~i 278 (815)
..+-.++++.|.++.+.++.+.+.. ....+++|+||||||||++++.||..+. ..++
T Consensus 181 ~r~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~ 247 (852)
T TIGR03345 181 AREGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLL 247 (852)
T ss_pred hcCCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEE
Confidence 3455788899999987666555432 2345899999999999999999998862 4456
Q ss_pred EEechhhh--hhhhchhHHHHHHHHHHHHh-cCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEE
Q 003503 279 LINGPEIM--SKLAGESESNLRKAFEEAEK-NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVM 355 (815)
Q Consensus 279 ~v~~~~l~--~~~~g~~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi 355 (815)
.++...+. ..+.|+.+.+++.+|+.+.. ..+.||||||+|.+...++... ..+ +.+.|... ..++.+.+|
T Consensus 248 ~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~-~~d--~~n~Lkp~----l~~G~l~~I 320 (852)
T TIGR03345 248 SLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAG-QGD--AANLLKPA----LARGELRTI 320 (852)
T ss_pred EeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccc-ccc--HHHHhhHH----hhCCCeEEE
Confidence 66666655 36789999999999999865 4678999999999987654221 111 12223333 346789999
Q ss_pred EecCCCC-----CCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCc----c-ccchhhhHHHhhcCCCcHH-----
Q 003503 356 GATNRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMK----L-AEDVDLERVAKDTHGYVGS----- 420 (815)
Q Consensus 356 ~atn~~~-----~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~----l-~~~~~l~~la~~t~g~~~~----- 420 (815)
|+|+..+ .+|++|.| || ..|.++.|+.+++..||+.+.+.+. + ..+..+..++..+++|...
T Consensus 321 gaTT~~e~~~~~~~d~AL~r--Rf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPD 397 (852)
T TIGR03345 321 AATTWAEYKKYFEKDPALTR--RF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPD 397 (852)
T ss_pred EecCHHHHhhhhhccHHHHH--hC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCcc
Confidence 9998643 47999999 89 5799999999999999876654432 1 1344577778888777642
Q ss_pred HHHHHHHHHHHH-hHHhhccccc-----------------cccc------c------hhhh------hhcc--------c
Q 003503 421 DLAALCTEAALQ-CIREKMDVID-----------------LEDE------T------IDAE------VLNS--------M 456 (815)
Q Consensus 421 dl~~l~~~a~~~-~~~~~~~~~~-----------------~~~~------~------~~~~------~~~~--------~ 456 (815)
....++.+|+.. .+........ ...+ . .... .... .
T Consensus 398 KAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (852)
T TIGR03345 398 KAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEK 477 (852)
T ss_pred HHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223344444321 1110000000 0000 0 0000 0000 0
Q ss_pred ccc-------------------cc--------cccccccc-----------cCCCcccccccc---cC--Ccc-------
Q 003503 457 AVT-------------------NE--------HFQTALGT-----------SNPSALRETVVE---VP--NVS------- 486 (815)
Q Consensus 457 ~v~-------------------~~--------~~~~al~~-----------~~p~~~~~~~~~---~~--~~~------- 486 (815)
... .. .....+.. +.+....+++.. +| .+.
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~e~~~l 557 (852)
T TIGR03345 478 ELVEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAVAEVVADWTGIPVGRMVRDEIEAV 557 (852)
T ss_pred HHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHHHHHHHHHHHCCCchhhchhHHHHH
Confidence 000 00 00000000 000000000000 01 010
Q ss_pred -------cccccccchhhhhhhccccCCCCChhhhhhhcCC---CCcc-eEEeCCCCCChhHHHHHHHHHh---CCcEEE
Q 003503 487 -------WEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMS---PSKG-VLFYGPPGCGKTLLAKAIANEC---QANFIS 552 (815)
Q Consensus 487 -------~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~---~~~g-ilL~GppGtGKT~lakala~~~---~~~~i~ 552 (815)
-..|.|++...+.+.+.+... +.|+. .+.| +||+||||+|||.+|+++|..+ ...++.
T Consensus 558 ~~l~~~L~~~v~GQ~~Av~~v~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~ 629 (852)
T TIGR03345 558 LSLPDRLAERVIGQDHALEAIAERIRTA--------RAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLIT 629 (852)
T ss_pred HHHHHHhcCeEcChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEE
Confidence 123444444444444433221 11222 2333 8999999999999999999998 457899
Q ss_pred Eeccchhhh------------ccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccc
Q 003503 553 VKGPELLTM------------WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMD 620 (815)
Q Consensus 553 v~~~~l~~~------------~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld 620 (815)
++++++... |+|..+. +.+.+..++.+++||+||||+.. ...+.+.|++.||
T Consensus 630 ~dmse~~~~~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka--------------~~~v~~~Llq~ld 693 (852)
T TIGR03345 630 INMSEFQEAHTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA--------------HPDVLELFYQVFD 693 (852)
T ss_pred EeHHHhhhhhhhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc--------------CHHHHHHHHHHhh
Confidence 998877432 4554322 23445566778899999999874 2356777887777
Q ss_pred cCC---------CCCcEEEEEecCCCC-----------------------------CCCccccCCCCCcceeeccCCCHH
Q 003503 621 GMN---------AKKTVFIIGATNRPD-----------------------------IIDPALLRPGRLDQLIYIPLPDEA 662 (815)
Q Consensus 621 ~~~---------~~~~v~vi~aTn~~~-----------------------------~ld~allr~gRf~~~i~~~~p~~~ 662 (815)
... ...+.+||+|||... .+.|+|+. |++ +|.|.+.+.+
T Consensus 694 ~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e 770 (852)
T TIGR03345 694 KGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDD 770 (852)
T ss_pred cceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHH
Confidence 532 125689999999521 14567776 997 8999999999
Q ss_pred HHHHHHHHHhccC--------CCCCccc---HHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH
Q 003503 663 SRLQIFKACLRKS--------PISPDVD---LSALARYTH--GFSGADITEVCQRACKYAIRENI 714 (815)
Q Consensus 663 ~r~~Il~~~l~~~--------~~~~~~~---~~~la~~t~--g~sg~di~~l~~~a~~~a~~~~~ 714 (815)
+..+|++..+... ++.-.++ .+.|++... .|-.+.++.+++.-...++.+.+
T Consensus 771 ~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~~ 835 (852)
T TIGR03345 771 VLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQI 835 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 9999998877432 3322222 455666543 24567899888888777776654
No 69
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.95 E-value=1.3e-27 Score=251.51 Aligned_cols=216 Identities=20% Similarity=0.290 Sum_probs=171.0
Q ss_pred CCcccc-cChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhhh
Q 003503 212 VGYDDV-GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLA 290 (815)
Q Consensus 212 ~~~~~i-~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~ 290 (815)
-+|+++ ||+--...-+..++...- ......+++.+|.+++||||||||||++|+++|++++..++.++++++.++|.
T Consensus 112 ~~f~~~~g~~~~~p~f~dk~~~hi~--kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~v 189 (413)
T PLN00020 112 RSFDNLVGGYYIAPAFMDKVAVHIA--KNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENA 189 (413)
T ss_pred cchhhhcCccccCHHHHHHHHHHHH--hhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcC
Confidence 355666 776555444433332111 11233467899999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHh-----cCCcEEEecccccccCCCCCchhHHHHHHH-HHHHHhhhcc------------cCCCcE
Q 003503 291 GESESNLRKAFEEAEK-----NAPSIIFIDELDSIAPKREKTHGEVERRIV-SQLLTLMDGL------------KSRAHV 352 (815)
Q Consensus 291 g~~~~~l~~vf~~a~~-----~~p~il~iDEid~l~~~~~~~~~~~~~~v~-~~Ll~~ld~~------------~~~~~v 352 (815)
|++++.++.+|+.|.. ..||+|||||||.+++.++.....+..+++ .+|+++||+. .....|
T Consensus 190 GEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V 269 (413)
T PLN00020 190 GEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRV 269 (413)
T ss_pred CcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCc
Confidence 9999999999999975 469999999999999998765556655555 8999998863 235679
Q ss_pred EEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhhHHHhhcCC----CcHHHHHHHHHH
Q 003503 353 IVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHG----YVGSDLAALCTE 428 (815)
Q Consensus 353 ivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g----~~~~dl~~l~~~ 428 (815)
+||+|||+|+.||++|+|+|||++.+ ..|+.++|.+||+.+++...+. ..++..++..+.| |.|+--.....+
T Consensus 270 ~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~ 346 (413)
T PLN00020 270 PIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDD 346 (413)
T ss_pred eEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHH
Confidence 99999999999999999999999965 5899999999999999988776 4678888887766 445444444444
Q ss_pred HHHH
Q 003503 429 AALQ 432 (815)
Q Consensus 429 a~~~ 432 (815)
+...
T Consensus 347 ~v~~ 350 (413)
T PLN00020 347 EVRK 350 (413)
T ss_pred HHHH
Confidence 4333
No 70
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.95 E-value=5.7e-27 Score=283.60 Aligned_cols=455 Identities=23% Similarity=0.357 Sum_probs=284.6
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEEEE
Q 003503 211 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFLI 280 (815)
Q Consensus 211 ~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l----------~~~~i~v 280 (815)
.-.++.+.|.+++++++.+++.. ....+++|+||||||||++++.||..+ +..++.+
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l 241 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL 241 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 34578899999999998887653 345689999999999999999999886 3678899
Q ss_pred echhhh--hhhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEec
Q 003503 281 NGPEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGAT 358 (815)
Q Consensus 281 ~~~~l~--~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~at 358 (815)
+...+. .+|.|+.+.+++.+++.+....+.||||||+|.+....+... .+ .+.+.|...+ .++.+.+|++|
T Consensus 242 ~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g-~~--~~a~lLkp~l----~rg~l~~IgaT 314 (821)
T CHL00095 242 DIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEG-AI--DAANILKPAL----ARGELQCIGAT 314 (821)
T ss_pred eHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCC-cc--cHHHHhHHHH----hCCCcEEEEeC
Confidence 988876 467899999999999999888889999999999987654322 11 1222233222 46778999998
Q ss_pred CCCC-----CCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcC----Ccc-ccchhhhHHHhhcCCCcHH-----HHH
Q 003503 359 NRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKN----MKL-AEDVDLERVAKDTHGYVGS-----DLA 423 (815)
Q Consensus 359 n~~~-----~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~----~~l-~~~~~l~~la~~t~g~~~~-----dl~ 423 (815)
+..+ ..|+++.+ ||. .+.++.|+.++...|++..... ..+ ..+..+..++..+++|.+. ...
T Consensus 315 t~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkai 391 (821)
T CHL00095 315 TLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAI 391 (821)
T ss_pred CHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHH
Confidence 8664 46899998 885 5789999999998888754321 122 2334567777777777642 223
Q ss_pred HHHHHHHHHh-HHhhcccccc------------c------ccchhhh------------hh---------------cccc
Q 003503 424 ALCTEAALQC-IREKMDVIDL------------E------DETIDAE------------VL---------------NSMA 457 (815)
Q Consensus 424 ~l~~~a~~~~-~~~~~~~~~~------------~------~~~~~~~------------~~---------------~~~~ 457 (815)
.++.+|+... +......... + ....... .+ ....
T Consensus 392 dlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (821)
T CHL00095 392 DLLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQSKKTEEEKRLEVPV 471 (821)
T ss_pred HHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCc
Confidence 4445443321 1100000000 0 0000000 00 0011
Q ss_pred cccccccccccccC--CCc-cc----ccccccCCcccccccccchhhhhhhccccCCCCChhhhhhhcC----CCCcceE
Q 003503 458 VTNEHFQTALGTSN--PSA-LR----ETVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGM----SPSKGVL 526 (815)
Q Consensus 458 v~~~~~~~al~~~~--p~~-~~----~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~----~~~~gil 526 (815)
++.+++...+.... |.. +. +.+......--+.|.|++++.+.+...+... +.|+ +|...+|
T Consensus 472 v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~l 543 (821)
T CHL00095 472 VTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRA--------RVGLKNPNRPIASFL 543 (821)
T ss_pred cCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHH--------hhcccCCCCCceEEE
Confidence 22222222111110 000 00 0000000011134566666666665544321 1122 1223489
Q ss_pred EeCCCCCChhHHHHHHHHHh---CCcEEEEeccchhh-----h-------ccCccHHHHHHHHHHHhhCCCeEEEEecch
Q 003503 527 FYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT-----M-------WFGESEANVREIFDKARQSAPCVLFFDELD 591 (815)
Q Consensus 527 L~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~-----~-------~~g~se~~i~~~F~~a~~~~p~ilfiDEid 591 (815)
|+||+|||||+||++||..+ ..+++.++++++.. + |+|..+ .+.+....+..+.+|++|||+|
T Consensus 544 f~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeie 621 (821)
T CHL00095 544 FSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIE 621 (821)
T ss_pred EECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChh
Confidence 99999999999999999987 36789998887632 2 333222 2346666777777999999999
Q ss_pred hhhhccCCCCCCCCchHHHHHHHHHhccccCC---------CCCcEEEEEecCCCCC-----------------------
Q 003503 592 SIATQRGSSTGDAGGAADRVLNQLLTEMDGMN---------AKKTVFIIGATNRPDI----------------------- 639 (815)
Q Consensus 592 ~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~---------~~~~v~vi~aTn~~~~----------------------- 639 (815)
.+. ..+.+.||+.||... ..++.++|+|||....
T Consensus 622 ka~--------------~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~ 687 (821)
T CHL00095 622 KAH--------------PDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQY 687 (821)
T ss_pred hCC--------------HHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccH
Confidence 862 457788888888532 2357899999985321
Q ss_pred --------------CCccccCCCCCcceeeccCCCHHHHHHHHHHHhccC-------CCCCccc---HHHHHHH--cCCC
Q 003503 640 --------------IDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS-------PISPDVD---LSALARY--THGF 693 (815)
Q Consensus 640 --------------ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~-------~~~~~~~---~~~la~~--t~g~ 693 (815)
+.|.|+. |+|.+|.|.+.+.++..+|++..+.+. ++.-.++ ...|++. ...|
T Consensus 688 ~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~ 765 (821)
T CHL00095 688 KRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLY 765 (821)
T ss_pred HHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCC
Confidence 2345665 999999999999999999998777532 2221222 4456654 2344
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 003503 694 SGADITEVCQRACKYAIRENI 714 (815)
Q Consensus 694 sg~di~~l~~~a~~~a~~~~~ 714 (815)
-.+.|+.++++-....+.+.+
T Consensus 766 GAR~l~r~i~~~i~~~l~~~~ 786 (821)
T CHL00095 766 GARPLRRAIMRLLEDPLAEEV 786 (821)
T ss_pred ChhhHHHHHHHHHHHHHHHHH
Confidence 467888888887777766554
No 71
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.95 E-value=1.6e-27 Score=280.07 Aligned_cols=226 Identities=43% Similarity=0.753 Sum_probs=206.5
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhhh
Q 003503 211 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLA 290 (815)
Q Consensus 211 ~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~ 290 (815)
...|+++.|++..++.+.+++.+ +..++.+..++...+++|||+||||||||+++++++++++.+++.+++.++...+.
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 45788999999999999999987 66778888888888999999999999999999999999999999999999999899
Q ss_pred chhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCc---hhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHH
Q 003503 291 GESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA 367 (815)
Q Consensus 291 g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~a 367 (815)
+.....++.+|..+....|+||||||+|.+...++.. ......+++++|+..|+++.....+++|++||+++.+|++
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~A 306 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA 306 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHH
Confidence 9999999999999999999999999999998876542 2234457888999999999888899999999999999999
Q ss_pred hhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhhHHHhhcCCCcHHHHHHHHHHHHHHhHHhh
Q 003503 368 LRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREK 437 (815)
Q Consensus 368 l~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~ 437 (815)
+.|++||++.+.++.|+.++|.+||+.++++.++..+.++..++..+.||+|+|+..+|++|+..+.++.
T Consensus 307 l~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~ 376 (644)
T PRK10733 307 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN 376 (644)
T ss_pred HhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999998888999999999999999999999999999887653
No 72
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.95 E-value=4.9e-26 Score=276.15 Aligned_cols=457 Identities=23% Similarity=0.365 Sum_probs=279.4
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEEE
Q 003503 210 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFL 279 (815)
Q Consensus 210 ~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l----------~~~~i~ 279 (815)
.+=.++.+.|.++.+.++.+.+.. ....+++|+||||||||++++.++..+ +.+++.
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence 444678899999987777666543 345678999999999999999999886 556777
Q ss_pred Eechhhh--hhhhchhHHHHHHHHHHHHh-cCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEE
Q 003503 280 INGPEIM--SKLAGESESNLRKAFEEAEK-NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMG 356 (815)
Q Consensus 280 v~~~~l~--~~~~g~~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~ 356 (815)
++...+. ..+.|+.+.+++.+|..+.. ..+.||||||+|.+...+... +.. .+.+.|.. ...++.+.+||
T Consensus 235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~-~~~--d~~~~Lk~----~l~~g~i~~Ig 307 (852)
T TIGR03346 235 LDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE-GAM--DAGNMLKP----ALARGELHCIG 307 (852)
T ss_pred eeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc-chh--HHHHHhch----hhhcCceEEEE
Confidence 8776665 46788999999999998865 458999999999998654322 111 12222322 23567899999
Q ss_pred ecCCCC-----CCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-----cchhhhHHHhhcCCCcHH-----H
Q 003503 357 ATNRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-----EDVDLERVAKDTHGYVGS-----D 421 (815)
Q Consensus 357 atn~~~-----~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-----~~~~l~~la~~t~g~~~~-----d 421 (815)
+|+..+ .+|+++.| ||. .+.++.|+.+++..||+.+...+... .+..+...+..+++|... .
T Consensus 308 aTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdk 384 (852)
T TIGR03346 308 ATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDK 384 (852)
T ss_pred eCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchH
Confidence 988764 47999999 895 58899999999999999876665432 233566667777777542 2
Q ss_pred HHHHHHHHHHHh-HH------------hhccccc-----cccc--------------c--------------hhhhh--h
Q 003503 422 LAALCTEAALQC-IR------------EKMDVID-----LEDE--------------T--------------IDAEV--L 453 (815)
Q Consensus 422 l~~l~~~a~~~~-~~------------~~~~~~~-----~~~~--------------~--------------~~~~~--~ 453 (815)
-..++.+|+... +. +....+. .... . +..+. .
T Consensus 385 Aidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (852)
T TIGR03346 385 AIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAAI 464 (852)
T ss_pred HHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233444443211 10 0000000 0000 0 00000 0
Q ss_pred ccc-----ccc-----------cccccc--------------cc-----------------cccCCCcccccccc---cC
Q 003503 454 NSM-----AVT-----------NEHFQT--------------AL-----------------GTSNPSALRETVVE---VP 483 (815)
Q Consensus 454 ~~~-----~v~-----------~~~~~~--------------al-----------------~~~~p~~~~~~~~~---~~ 483 (815)
... .+. ..++.. .+ ..+.+.....++.. +|
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~i~~v~~~~tgip 544 (852)
T TIGR03346 465 QGIQQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTAEEIAEVVSRWTGIP 544 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccccccccCCcCHHHHHHHHHHhcCCC
Confidence 000 000 000000 00 00000000000000 01
Q ss_pred C----------------cccccccccchhhhhhhccccCCCCChhhhhhhcC----CCCcceEEeCCCCCChhHHHHHHH
Q 003503 484 N----------------VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGM----SPSKGVLFYGPPGCGKTLLAKAIA 543 (815)
Q Consensus 484 ~----------------~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~----~~~~gilL~GppGtGKT~lakala 543 (815)
. .-...|.|++...+.+...+... ..|+ +|...+||+||||||||++|++||
T Consensus 545 ~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La 616 (852)
T TIGR03346 545 VSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELAKALA 616 (852)
T ss_pred cccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHH--------hccCCCCCCCCeEEEEEcCCCCCHHHHHHHHH
Confidence 0 01223445555444444433211 1122 223459999999999999999999
Q ss_pred HHh---CCcEEEEeccchhh-----h-------ccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchH
Q 003503 544 NEC---QANFISVKGPELLT-----M-------WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAA 608 (815)
Q Consensus 544 ~~~---~~~~i~v~~~~l~~-----~-------~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~ 608 (815)
..+ +.+++.++++++.. + |+|..+ .+.+....+..+.+|+|||||+.+-
T Consensus 617 ~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~--~g~l~~~v~~~p~~vlllDeieka~-------------- 680 (852)
T TIGR03346 617 EFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEE--GGQLTEAVRRKPYSVVLFDEVEKAH-------------- 680 (852)
T ss_pred HHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCccc--ccHHHHHHHcCCCcEEEEeccccCC--------------
Confidence 987 46799999877642 2 223221 1334455566677899999999762
Q ss_pred HHHHHHHHhccccCC---------CCCcEEEEEecCCCCC-------------------------CCccccCCCCCccee
Q 003503 609 DRVLNQLLTEMDGMN---------AKKTVFIIGATNRPDI-------------------------IDPALLRPGRLDQLI 654 (815)
Q Consensus 609 ~~vl~~lL~~ld~~~---------~~~~v~vi~aTn~~~~-------------------------ld~allr~gRf~~~i 654 (815)
..+.+.||+.|+... +..+.+||+|||.... +.|.|+. |+|.++
T Consensus 681 ~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~Ii 758 (852)
T TIGR03346 681 PDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIV 758 (852)
T ss_pred HHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEE
Confidence 456777888776431 1356889999997321 3466775 999999
Q ss_pred eccCCCHHHHHHHHHHHhcc-------CCCCCccc---HHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHH
Q 003503 655 YIPLPDEASRLQIFKACLRK-------SPISPDVD---LSALARYT--HGFSGADITEVCQRACKYAIRENIE 715 (815)
Q Consensus 655 ~~~~p~~~~r~~Il~~~l~~-------~~~~~~~~---~~~la~~t--~g~sg~di~~l~~~a~~~a~~~~~~ 715 (815)
.|.+++.+...+|+...+.. .++...++ +..|++.. ..+..+.|++++++.....+.+.+-
T Consensus 759 vF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~l 831 (852)
T TIGR03346 759 VFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKIL 831 (852)
T ss_pred ecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999998877642 12222222 45566642 2566789999999998888776543
No 73
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.95 E-value=2.3e-27 Score=286.82 Aligned_cols=201 Identities=20% Similarity=0.272 Sum_probs=168.9
Q ss_pred cccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhh-----------------------
Q 003503 233 LPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKL----------------------- 289 (815)
Q Consensus 233 ~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~----------------------- 289 (815)
.|.+.+.....+|+.+++||||+||||||||.||++||++.+.+++.|.+++++..+
T Consensus 1614 ~~s~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~ 1693 (2281)
T CHL00206 1614 FPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDI 1693 (2281)
T ss_pred CcccCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccccccccccccccccccc
Confidence 344445567789999999999999999999999999999999999999999988643
Q ss_pred ------------------hchh--HHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhccc--
Q 003503 290 ------------------AGES--ESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK-- 347 (815)
Q Consensus 290 ------------------~g~~--~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-- 347 (815)
.+.. ..+++.+|+.|+...||||||||||.+..+.. ....+.+|++.|++..
T Consensus 1694 ~~~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds------~~ltL~qLLneLDg~~~~ 1767 (2281)
T CHL00206 1694 DRDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES------NYLSLGLLVNSLSRDCER 1767 (2281)
T ss_pred ccccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc------ceehHHHHHHHhcccccc
Confidence 1111 23488999999999999999999999987621 1123688999998763
Q ss_pred -CCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHH--hcCCccccc-hhhhHHHhhcCCCcHHHHH
Q 003503 348 -SRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIH--TKNMKLAED-VDLERVAKDTHGYVGSDLA 423 (815)
Q Consensus 348 -~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~--~~~~~l~~~-~~l~~la~~t~g~~~~dl~ 423 (815)
...+|+||||||+|+.+||||.|+|||++.|+++.|+..+|.+++..+ .+++.+..+ +++..+|..|.||+|+||.
T Consensus 1768 ~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLa 1847 (2281)
T CHL00206 1768 CSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLV 1847 (2281)
T ss_pred CCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHH
Confidence 345799999999999999999999999999999999999999988754 455666543 5789999999999999999
Q ss_pred HHHHHHHHHhHHhhcc
Q 003503 424 ALCTEAALQCIREKMD 439 (815)
Q Consensus 424 ~l~~~a~~~~~~~~~~ 439 (815)
++|.+|++.++++...
T Consensus 1848 nLvNEAaliAirq~ks 1863 (2281)
T CHL00206 1848 ALTNEALSISITQKKS 1863 (2281)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 9999999999887643
No 74
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.95 E-value=7.3e-26 Score=273.26 Aligned_cols=454 Identities=22% Similarity=0.355 Sum_probs=267.4
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEEE
Q 003503 210 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFL 279 (815)
Q Consensus 210 ~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l----------~~~~i~ 279 (815)
.+-.++++.|.++.+.++.+++.. ....+++|+||||||||++++.||..+ +.+++.
T Consensus 173 r~~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~ 239 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 239 (857)
T ss_pred hcCCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEE
Confidence 445678899999987777666543 235679999999999999999999987 567788
Q ss_pred Eechhhh--hhhhchhHHHHHHHHHHHHh-cCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEE
Q 003503 280 INGPEIM--SKLAGESESNLRKAFEEAEK-NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMG 356 (815)
Q Consensus 280 v~~~~l~--~~~~g~~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~ 356 (815)
++...+. .++.|+.+.+++.+|..... ..++||||||+|.+...+... +.++ ..+.|. ..-.++.+.+||
T Consensus 240 l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~-~~~d--~~~~lk----p~l~~g~l~~Ig 312 (857)
T PRK10865 240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD-GAMD--AGNMLK----PALARGELHCVG 312 (857)
T ss_pred EehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc-cchh--HHHHhc----chhhcCCCeEEE
Confidence 8777765 45789999999999998644 568899999999998765432 2221 122232 233567899999
Q ss_pred ecCCCC-----CCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcccc-----chhhhHHHhhcCCCcH-----HH
Q 003503 357 ATNRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAE-----DVDLERVAKDTHGYVG-----SD 421 (815)
Q Consensus 357 atn~~~-----~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~-----~~~l~~la~~t~g~~~-----~d 421 (815)
+|+..+ .+|+++.| ||. .|.++.|+.+++..||+.+..++.... +..+...+..+++|.. ..
T Consensus 313 aTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdk 389 (857)
T PRK10865 313 ATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDK 389 (857)
T ss_pred cCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChH
Confidence 998876 47999999 896 588999999999999987765543222 2233444455555542 11
Q ss_pred HHHHHHHHHHHh-------------HHhhc-------cccccccc-------------------c-------hhh--hhh
Q 003503 422 LAALCTEAALQC-------------IREKM-------DVIDLEDE-------------------T-------IDA--EVL 453 (815)
Q Consensus 422 l~~l~~~a~~~~-------------~~~~~-------~~~~~~~~-------------------~-------~~~--~~~ 453 (815)
...++..++... +.+.. .....+.. . +.. ...
T Consensus 390 Ai~LiD~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~eq~k~~k~el 469 (857)
T PRK10865 390 AIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASL 469 (857)
T ss_pred HHHHHHHHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222111000 00000 00000000 0 000 000
Q ss_pred ----------cccc--c----ccccc--------------cccc---------------cccCCCcccccccc---cC--
Q 003503 454 ----------NSMA--V----TNEHF--------------QTAL---------------GTSNPSALRETVVE---VP-- 483 (815)
Q Consensus 454 ----------~~~~--v----~~~~~--------------~~al---------------~~~~p~~~~~~~~~---~~-- 483 (815)
.... + ...++ ...+ ..+.+.....++.. +|
T Consensus 470 ~~~~~~~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~ 549 (857)
T PRK10865 470 SGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVS 549 (857)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhccccccccCccCHHHHHHHHHHHHCCCch
Confidence 0000 0 00000 0000 00000000000000 00
Q ss_pred --------------CcccccccccchhhhhhhccccCCCCChhhhhhhcCC----CCcceEEeCCCCCChhHHHHHHHHH
Q 003503 484 --------------NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMS----PSKGVLFYGPPGCGKTLLAKAIANE 545 (815)
Q Consensus 484 --------------~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~----~~~gilL~GppGtGKT~lakala~~ 545 (815)
..-...+.|++...+.+...+... ..|+. |...++|+||||||||++|++||..
T Consensus 550 ~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~ 621 (857)
T PRK10865 550 RMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF 621 (857)
T ss_pred hhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 001122444444444443333210 11222 1134899999999999999999988
Q ss_pred h---CCcEEEEeccchhhh------------ccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHH
Q 003503 546 C---QANFISVKGPELLTM------------WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADR 610 (815)
Q Consensus 546 ~---~~~~i~v~~~~l~~~------------~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~ 610 (815)
+ +.+++.++++++... |+|..+ -+.+....+..+.++|||||++.+- ..
T Consensus 622 l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~--~g~l~~~v~~~p~~vLllDEieka~--------------~~ 685 (857)
T PRK10865 622 MFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEE--GGYLTEAVRRRPYSVILLDEVEKAH--------------PD 685 (857)
T ss_pred hhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccch--hHHHHHHHHhCCCCeEEEeehhhCC--------------HH
Confidence 7 357899998876432 222211 1223333445556899999998752 34
Q ss_pred HHHHHHhccccCC---------CCCcEEEEEecCCC-------------------------CCCCccccCCCCCcceeec
Q 003503 611 VLNQLLTEMDGMN---------AKKTVFIIGATNRP-------------------------DIIDPALLRPGRLDQLIYI 656 (815)
Q Consensus 611 vl~~lL~~ld~~~---------~~~~v~vi~aTn~~-------------------------~~ld~allr~gRf~~~i~~ 656 (815)
+.+.|++.|+... ...+.+||+|||.. ..+.|+|+. |+|.++.|
T Consensus 686 v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF 763 (857)
T PRK10865 686 VFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVF 763 (857)
T ss_pred HHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEec
Confidence 6677777776421 12457899999973 124578886 99999999
Q ss_pred cCCCHHHHHHHHHHHhccC-------CCCCccc---HHHHHHHcCCCC----HHHHHHHHHHHHHHHHHHHH
Q 003503 657 PLPDEASRLQIFKACLRKS-------PISPDVD---LSALARYTHGFS----GADITEVCQRACKYAIRENI 714 (815)
Q Consensus 657 ~~p~~~~r~~Il~~~l~~~-------~~~~~~~---~~~la~~t~g~s----g~di~~l~~~a~~~a~~~~~ 714 (815)
.+++.+...+|++..+.+. ++.-.++ +..|+. .||+ .+.|+.++++-....+.+.+
T Consensus 764 ~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~--~gy~~~~GARpL~r~I~~~i~~~la~~i 833 (857)
T PRK10865 764 HPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSE--NGYDPVYGARPLKRAIQQQIENPLAQQI 833 (857)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHH--cCCCccCChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988777542 2322233 334443 3444 56888888888777776654
No 75
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.5e-25 Score=256.05 Aligned_cols=456 Identities=23% Similarity=0.353 Sum_probs=287.4
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEEEE
Q 003503 211 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFLI 280 (815)
Q Consensus 211 ~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l----------~~~~i~v 280 (815)
.-.++.+.|-++++.++.+++.. ....+-+|+|+||+|||.++..||..+ +..++.+
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~R-------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILSR-------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHhc-------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 44677799999998888777653 234567899999999999999999875 3445666
Q ss_pred echhhh--hhhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEec
Q 003503 281 NGPEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGAT 358 (815)
Q Consensus 281 ~~~~l~--~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~at 358 (815)
+-..+. .+|.|+.+++++.++.+.....+.||||||+|.+........+.++ ..+.| ...-.++.+-+||+|
T Consensus 233 D~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~D--AaNiL----KPaLARGeL~~IGAT 306 (786)
T COG0542 233 DLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMD--AANLL----KPALARGELRCIGAT 306 (786)
T ss_pred cHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccc--hhhhh----HHHHhcCCeEEEEec
Confidence 666655 4788999999999999999888899999999999877543221111 22222 222356778889888
Q ss_pred CCCC-----CCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-----cchhhhHHHhhcCCCcH-----HHHH
Q 003503 359 NRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-----EDVDLERVAKDTHGYVG-----SDLA 423 (815)
Q Consensus 359 n~~~-----~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-----~~~~l~~la~~t~g~~~-----~dl~ 423 (815)
+.-+ .-|+||.| || ..+.+..|+.++-..||+-...++... .+.-+...+..++.|.. .--.
T Consensus 307 T~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAI 383 (786)
T COG0542 307 TLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAI 383 (786)
T ss_pred cHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHH
Confidence 7433 34899998 88 568999999999999999765544322 22334555555544432 2233
Q ss_pred HHHHHHHHHhHHhhcccccc------------cccchh-------hhhhc---cc--------------ccccccccccc
Q 003503 424 ALCTEAALQCIREKMDVIDL------------EDETID-------AEVLN---SM--------------AVTNEHFQTAL 467 (815)
Q Consensus 424 ~l~~~a~~~~~~~~~~~~~~------------~~~~~~-------~~~~~---~~--------------~v~~~~~~~al 467 (815)
.++.+|+............+ +..... ..... .. .++.+++...+
T Consensus 384 DLiDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Ia~vv 463 (786)
T COG0542 384 DLLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEAEVDEDDIAEVV 463 (786)
T ss_pred HHHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHHHHHhhccCHHHHHHHH
Confidence 45555543221110000000 000000 00000 00 01112222211
Q ss_pred cccC--CCc-c----cccccccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCC----CCcceEEeCCCCCChh
Q 003503 468 GTSN--PSA-L----RETVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMS----PSKGVLFYGPPGCGKT 536 (815)
Q Consensus 468 ~~~~--p~~-~----~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~----~~~gilL~GppGtGKT 536 (815)
.... |.. + ++......+.--..|.|+++....+...|.. .+.|+. |..++||.||+|+|||
T Consensus 464 ~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrr--------aRaGL~dp~rPigsFlF~GPTGVGKT 535 (786)
T COG0542 464 ARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRR--------ARAGLGDPNRPIGSFLFLGPTGVGKT 535 (786)
T ss_pred HHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHH--------HhcCCCCCCCCceEEEeeCCCcccHH
Confidence 1110 000 0 0011111112223456666665555554432 122332 3335999999999999
Q ss_pred HHHHHHHHHhC---CcEEEEeccchhhh------------ccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCC
Q 003503 537 LLAKAIANECQ---ANFISVKGPELLTM------------WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSST 601 (815)
Q Consensus 537 ~lakala~~~~---~~~i~v~~~~l~~~------------~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~ 601 (815)
.||++||..+. ..++.++++|+..+ |||..+ =+.+-+..|+.++|||+||||++
T Consensus 536 ELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyee--GG~LTEaVRr~PySViLlDEIEK--------- 604 (786)
T COG0542 536 ELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEE--GGQLTEAVRRKPYSVILLDEIEK--------- 604 (786)
T ss_pred HHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceecc--ccchhHhhhcCCCeEEEechhhh---------
Confidence 99999999986 78999999999742 555444 24566777888899999999988
Q ss_pred CCCCchHHHHHHHHHhccccCC---------CCCcEEEEEecCCCC----------------------------CCCccc
Q 003503 602 GDAGGAADRVLNQLLTEMDGMN---------AKKTVFIIGATNRPD----------------------------IIDPAL 644 (815)
Q Consensus 602 ~~~~~~~~~vl~~lL~~ld~~~---------~~~~v~vi~aTn~~~----------------------------~ld~al 644 (815)
+...|++.||+.||... ..++.+||+|||--. .+.|++
T Consensus 605 -----AHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEF 679 (786)
T COG0542 605 -----AHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEF 679 (786)
T ss_pred -----cCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHH
Confidence 35679999999999753 234689999998421 145777
Q ss_pred cCCCCCcceeeccCCCHHHHHHHHHHHhccC-------CCCCccc---HHHHHHHc--CCCCHHHHHHHHHHHHHHHHHH
Q 003503 645 LRPGRLDQLIYIPLPDEASRLQIFKACLRKS-------PISPDVD---LSALARYT--HGFSGADITEVCQRACKYAIRE 712 (815)
Q Consensus 645 lr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~-------~~~~~~~---~~~la~~t--~g~sg~di~~l~~~a~~~a~~~ 712 (815)
+. |+|.+|.|.+.+.+...+|+...+... .+.-.++ .+.|++.. ..|-++-|+.++++-....+.+
T Consensus 680 LN--Rid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~ 757 (786)
T COG0542 680 LN--RIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLAD 757 (786)
T ss_pred Hh--hcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHH
Confidence 77 999999999999999999998877432 2221111 34455442 3556677887777766666555
Q ss_pred HH
Q 003503 713 NI 714 (815)
Q Consensus 713 ~~ 714 (815)
.+
T Consensus 758 ~i 759 (786)
T COG0542 758 EI 759 (786)
T ss_pred HH
Confidence 43
No 76
>CHL00181 cbbX CbbX; Provisional
Probab=99.88 E-value=3.9e-22 Score=212.12 Aligned_cols=215 Identities=23% Similarity=0.338 Sum_probs=166.7
Q ss_pred cccccccchhhhhhhccccCCCCChhhhhhhcCCCCc---ceEEeCCCCCChhHHHHHHHHHhC-------CcEEEEecc
Q 003503 487 WEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSK---GVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGP 556 (815)
Q Consensus 487 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~---gilL~GppGtGKT~lakala~~~~-------~~~i~v~~~ 556 (815)
+.+++|++++|+++.+.+.+ +.........|+.++. +++|+||||||||++|+++|..+. .+++.++.+
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 45799999999999998876 3344555666765542 389999999999999999998862 358999999
Q ss_pred chhhhccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCC
Q 003503 557 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNR 636 (815)
Q Consensus 557 ~l~~~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~ 636 (815)
++.+.|+|+++..++.+|+.+.. +||||||+|.+...++. ......+++.|+..|+.. .++++||+|++.
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a~g---gVLfIDE~~~l~~~~~~-----~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~ 170 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKAMG---GVLFIDEAYYLYKPDNE-----RDYGSEAIEILLQVMENQ--RDDLVVIFAGYK 170 (287)
T ss_pred HHHHHHhccchHHHHHHHHHccC---CEEEEEccchhccCCCc-----cchHHHHHHHHHHHHhcC--CCCEEEEEeCCc
Confidence 99999999999889999998754 59999999998654321 235678899999999853 356888888874
Q ss_pred CC-----CCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCC--CCCcccHHHHHHH------cCCCC-HHHHHHHH
Q 003503 637 PD-----IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSP--ISPDVDLSALARY------THGFS-GADITEVC 702 (815)
Q Consensus 637 ~~-----~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~--~~~~~~~~~la~~------t~g~s-g~di~~l~ 702 (815)
.. .++|++.+ ||+.+|+|++|+.+++.+|++.++++.. ++++. ...+... ...|. ++++++++
T Consensus 171 ~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~-~~~L~~~i~~~~~~~~~GNaR~vrn~v 247 (287)
T CHL00181 171 DRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEA-EKALLDYIKKRMEQPLFANARSVRNAL 247 (287)
T ss_pred HHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 32 24699998 9999999999999999999999997654 33322 3333332 23455 89999999
Q ss_pred HHHHHHHHHHHHH
Q 003503 703 QRACKYAIRENIE 715 (815)
Q Consensus 703 ~~a~~~a~~~~~~ 715 (815)
.+|...-..+.+.
T Consensus 248 e~~~~~~~~r~~~ 260 (287)
T CHL00181 248 DRARMRQANRIFE 260 (287)
T ss_pred HHHHHHHHHHHHc
Confidence 9998887776644
No 77
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.6e-22 Score=205.62 Aligned_cols=187 Identities=30% Similarity=0.496 Sum_probs=149.0
Q ss_pred ccccccccchhhhhhhccccCCCCChhhhhhhc-CCCCcceEEeCCCCCChhHHHHHHHHHhC---------CcEEEEec
Q 003503 486 SWEDIGGLDNVKRELQETVQYPVEHPEKFEKFG-MSPSKGVLFYGPPGCGKTLLAKAIANECQ---------ANFISVKG 555 (815)
Q Consensus 486 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~-~~~~~gilL~GppGtGKT~lakala~~~~---------~~~i~v~~ 555 (815)
-|+.++--..+|+.|...+...+...+.-.... +...+-+||+||||||||+|+|++|..+. ..++.+++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 377776666777777665433222211111111 22344599999999999999999999873 34789999
Q ss_pred cchhhhccCccHHHHHHHHHHHhhC-----CCeEEEEecchhhhhccC-CCCCCCCchHHHHHHHHHhccccCCCCCcEE
Q 003503 556 PELLTMWFGESEANVREIFDKARQS-----APCVLFFDELDSIATQRG-SSTGDAGGAADRVLNQLLTEMDGMNAKKTVF 629 (815)
Q Consensus 556 ~~l~~~~~g~se~~i~~~F~~a~~~-----~p~ilfiDEid~l~~~r~-~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~ 629 (815)
..+.++|.+||.+.+..+|++.... ..-.++|||+++++..|. ..........-|++|.+|++||.+....+|+
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvl 299 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVL 299 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEE
Confidence 9999999999999999999987543 234677999999999883 3333445567899999999999999999999
Q ss_pred EEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhcc
Q 003503 630 IIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRK 674 (815)
Q Consensus 630 vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~ 674 (815)
+++|+|-.+.||.|+.. |-|-+.|+++|+...|.+|++.++..
T Consensus 300 iL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 300 ILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred EEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHH
Confidence 99999999999999998 99999999999999999999998864
No 78
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.87 E-value=1.5e-21 Score=208.01 Aligned_cols=213 Identities=23% Similarity=0.314 Sum_probs=166.8
Q ss_pred cccccchhhhhhhccccCCCCChhhhhhhcCCC---CcceEEeCCCCCChhHHHHHHHHHhC-------CcEEEEeccch
Q 003503 489 DIGGLDNVKRELQETVQYPVEHPEKFEKFGMSP---SKGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPEL 558 (815)
Q Consensus 489 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~---~~gilL~GppGtGKT~lakala~~~~-------~~~i~v~~~~l 558 (815)
+++|++++|+++.+.+.+ ...+....+.|+.+ ..+++|+||||||||++|+++|..+. .+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999998887 55666677777764 34699999999999999999998863 36999999999
Q ss_pred hhhccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCC-
Q 003503 559 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP- 637 (815)
Q Consensus 559 ~~~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~- 637 (815)
.+.|+|+++.+++.+|+.|.. ++|||||++.+...++ ......++++.|++.|+.. ..+++||+|++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~-----~~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDN-----ERDYGQEAIEILLQVMENQ--RDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCC-----ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHH
Confidence 999999999999999998754 6999999999864332 1235677889999999853 4578888887643
Q ss_pred -CC---CCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHH-------cCCCCHHHHHHHHHHH
Q 003503 638 -DI---IDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSALARY-------THGFSGADITEVCQRA 705 (815)
Q Consensus 638 -~~---ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-~~~~la~~-------t~g~sg~di~~l~~~a 705 (815)
+. ++|++.+ ||+..|+||+++.+++..|++.++++....-+. -+..+..+ ..--+++++++++..|
T Consensus 172 ~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~ 249 (284)
T TIGR02880 172 MDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRA 249 (284)
T ss_pred HHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 33 5899999 999999999999999999999999876432111 23344443 1223478999999999
Q ss_pred HHHHHHHHH
Q 003503 706 CKYAIRENI 714 (815)
Q Consensus 706 ~~~a~~~~~ 714 (815)
......+..
T Consensus 250 ~~~~~~r~~ 258 (284)
T TIGR02880 250 RLRQANRLF 258 (284)
T ss_pred HHHHHHHHh
Confidence 877766653
No 79
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.6e-21 Score=209.21 Aligned_cols=222 Identities=22% Similarity=0.337 Sum_probs=169.2
Q ss_pred cccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchhhhccC
Q 003503 485 VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 564 (815)
Q Consensus 485 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~~g 564 (815)
-+|+.++--.++|+.+.+-+....+.++-+++.|....+|.|||||||||||+++.|+|++++..++-+..+++.
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~----- 272 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK----- 272 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc-----
Confidence 567778777889999988888888889999999999999999999999999999999999999999888877653
Q ss_pred ccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCC---CCc-hHHHHHHHHHhccccCCCC--CcEEEEEecCCCC
Q 003503 565 ESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGD---AGG-AADRVLNQLLTEMDGMNAK--KTVFIIGATNRPD 638 (815)
Q Consensus 565 ~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~---~~~-~~~~vl~~lL~~ld~~~~~--~~v~vi~aTn~~~ 638 (815)
.... ++.+....... +||+|++||.-+..|+..... ..+ ...-.++.||+.+||+-.. +--|||+|||.++
T Consensus 273 ~n~d-Lr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E 349 (457)
T KOG0743|consen 273 LDSD-LRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE 349 (457)
T ss_pred CcHH-HHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence 2223 88888776555 699999999987755433221 111 1224689999999998543 3578999999999
Q ss_pred CCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCC-CCCcccHHHHHHHcCCCCHHHHHHHH-HH--HHHHHHHHHH
Q 003503 639 IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSP-ISPDVDLSALARYTHGFSGADITEVC-QR--ACKYAIRENI 714 (815)
Q Consensus 639 ~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~-~~~~~~~~~la~~t~g~sg~di~~l~-~~--a~~~a~~~~~ 714 (815)
.|||||+||||+|.+||++.=+.++-+.+++.++.-.. -.--.+++.+.+.+. .|+||+.+.. .. .+..|+++.+
T Consensus 350 kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~-~tPA~V~e~lm~~~~dad~~lk~Lv 428 (457)
T KOG0743|consen 350 KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETE-VTPAQVAEELMKNKNDADVALKGLV 428 (457)
T ss_pred hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcCc-cCHHHHHHHHhhccccHHHHHHHHH
Confidence 99999999999999999999999999999999886532 111112333333333 7999997633 22 3555555544
Q ss_pred H
Q 003503 715 E 715 (815)
Q Consensus 715 ~ 715 (815)
+
T Consensus 429 ~ 429 (457)
T KOG0743|consen 429 E 429 (457)
T ss_pred H
Confidence 4
No 80
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.86 E-value=1.6e-21 Score=183.90 Aligned_cols=130 Identities=46% Similarity=0.793 Sum_probs=118.2
Q ss_pred eEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchhhhccCccHHHHHHHHHHHhhCC-CeEEEEecchhhhhccCCCCCC
Q 003503 525 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSA-PCVLFFDELDSIATQRGSSTGD 603 (815)
Q Consensus 525 ilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~~g~se~~i~~~F~~a~~~~-p~ilfiDEid~l~~~r~~~~~~ 603 (815)
+||+||||||||++++.+|..++.+++.++++++.+.+.+++++.+..+|+.+.... |+|+||||+|.+.... ...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~---~~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS---QPS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC---STS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc---ccc
Confidence 689999999999999999999999999999999999999999999999999999888 9999999999999886 123
Q ss_pred CCchHHHHHHHHHhccccCCCC-CcEEEEEecCCCCCCCccccCCCCCcceeeccC
Q 003503 604 AGGAADRVLNQLLTEMDGMNAK-KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPL 658 (815)
Q Consensus 604 ~~~~~~~vl~~lL~~ld~~~~~-~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~ 658 (815)
......+++++|+..|+..... .+++||+|||.++.++++++| +||+..+++|+
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 3567788999999999988765 579999999999999999998 89999999974
No 81
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.86 E-value=2.6e-21 Score=204.61 Aligned_cols=215 Identities=21% Similarity=0.300 Sum_probs=160.5
Q ss_pred cccccccchhhhhhhccccCCCCChhhhhhhcCCCC---cceEEeCCCCCChhHHHHHHHHHh-------CCcEEEEecc
Q 003503 487 WEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPS---KGVLFYGPPGCGKTLLAKAIANEC-------QANFISVKGP 556 (815)
Q Consensus 487 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~---~gilL~GppGtGKT~lakala~~~-------~~~~i~v~~~ 556 (815)
+++++|++.+|+++++.+.|.... ....+.|+.+. .+++|+||||||||++|+++|+.+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 567999999999999988775433 22333455433 358999999999999999999874 2468899999
Q ss_pred chhhhccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCC
Q 003503 557 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNR 636 (815)
Q Consensus 557 ~l~~~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~ 636 (815)
++.+.|+|+++..++.+|+.+. .+||||||+|.|... .........++.|+..|+.. ..++++|++++.
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~------~~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~ 152 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARG------GEKDFGKEAIDTLVKGMEDN--RNEFVLILAGYS 152 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccC------CccchHHHHHHHHHHHHhcc--CCCEEEEecCCc
Confidence 9999999999999999998875 369999999999631 11224567888999999864 345666666554
Q ss_pred CC-----CCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHH---------cCCCCHHHHHHH
Q 003503 637 PD-----IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVD-LSALARY---------THGFSGADITEV 701 (815)
Q Consensus 637 ~~-----~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~-~~~la~~---------t~g~sg~di~~l 701 (815)
.+ .++|++.+ ||+..|+||+++.+++.+|++.++...+..-+.+ +..+++. ...-+++.++++
T Consensus 153 ~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~ 230 (261)
T TIGR02881 153 DEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNI 230 (261)
T ss_pred chhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHH
Confidence 33 36889998 9999999999999999999999998765432222 3444332 123467888888
Q ss_pred HHHHHHHHHHHHHH
Q 003503 702 CQRACKYAIRENIE 715 (815)
Q Consensus 702 ~~~a~~~a~~~~~~ 715 (815)
+..|......+.+.
T Consensus 231 ~e~a~~~~~~r~~~ 244 (261)
T TIGR02881 231 IEKAIRRQAVRLLD 244 (261)
T ss_pred HHHHHHHHHHHHhc
Confidence 88888777665543
No 82
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=5.3e-21 Score=199.51 Aligned_cols=180 Identities=30% Similarity=0.553 Sum_probs=144.6
Q ss_pred CCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchhhhccCccHHHHHHHHHHHhhCCC-eEEEEecchhhhhccC
Q 003503 520 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAP-CVLFFDELDSIATQRG 598 (815)
Q Consensus 520 ~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~~g~se~~i~~~F~~a~~~~p-~ilfiDEid~l~~~r~ 598 (815)
.+.++||||||||||||++|+-||..+|..+-.+.|.++.-. -.+.-..|.++|+.+..+.. =+|||||+|.++..|+
T Consensus 382 apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRn 460 (630)
T KOG0742|consen 382 APFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERN 460 (630)
T ss_pred chhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhc
Confidence 455679999999999999999999999999988888887531 12445679999999987654 3889999999999986
Q ss_pred CCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCC
Q 003503 599 SSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS 678 (815)
Q Consensus 599 ~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~ 678 (815)
.. .-++..+..+|.||-- -...+++++++.|||+|..||.|+-. |||.+|+||+|..++|..++..++.++-+.
T Consensus 461 kt--ymSEaqRsaLNAlLfR--TGdqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~ 534 (630)
T KOG0742|consen 461 KT--YMSEAQRSALNALLFR--TGDQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILK 534 (630)
T ss_pred hh--hhcHHHHHHHHHHHHH--hcccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcC
Confidence 54 2345667788888743 33456788999999999999999998 999999999999999999999988664321
Q ss_pred C---------------------------cccHHHHHHHcCCCCHHHHHHHHHHHH
Q 003503 679 P---------------------------DVDLSALARYTHGFSGADITEVCQRAC 706 (815)
Q Consensus 679 ~---------------------------~~~~~~la~~t~g~sg~di~~l~~~a~ 706 (815)
+ +.-+.+.|+.|+||||++|..++-...
T Consensus 535 ~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~vQ 589 (630)
T KOG0742|consen 535 PATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASVQ 589 (630)
T ss_pred cCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 0 011567889999999999998875433
No 83
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.79 E-value=1.3e-18 Score=164.06 Aligned_cols=129 Identities=48% Similarity=0.826 Sum_probs=117.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhhhchhHHHHHHHHHHHHhcC-CcEEEecccccccCCCCCchhH
Q 003503 252 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA-PSIIFIDELDSIAPKREKTHGE 330 (815)
Q Consensus 252 VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~-p~il~iDEid~l~~~~~~~~~~ 330 (815)
|||+||||||||++++.+|+.++.+++.+++.++.+.+.++....+..+|+.+.... |+++||||+|.+.++.......
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 799999999999999999999999999999999998889999999999999998887 9999999999999887445566
Q ss_pred HHHHHHHHHHHhhhcccCC-CcEEEEEecCCCCCCCHHhhccCCcceEEEcC
Q 003503 331 VERRIVSQLLTLMDGLKSR-AHVIVMGATNRPNSIDPALRRFGRFDREIDIG 381 (815)
Q Consensus 331 ~~~~v~~~Ll~~ld~~~~~-~~vivi~atn~~~~ld~al~r~~rf~~~i~i~ 381 (815)
....+..+|+..++..... .++++|++||.++.+++.+.+ +||+..++++
T Consensus 81 ~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~ 131 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFP 131 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-
T ss_pred ccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcC
Confidence 7788899999999987765 569999999999999999998 8999999886
No 84
>CHL00181 cbbX CbbX; Provisional
Probab=99.75 E-value=2.5e-17 Score=175.36 Aligned_cols=214 Identities=18% Similarity=0.313 Sum_probs=158.2
Q ss_pred cccccChHHHHHHHHHHHHcccCChhhHhhhCCCC---CceEEEECCCCCcHHHHHHHHHHHhC-------CeEEEEech
Q 003503 214 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKP---PKGILLYGPPGSGKTLIARAVANETG-------AFFFLINGP 283 (815)
Q Consensus 214 ~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~---~~~VLL~GppGtGKTtLar~la~~l~-------~~~i~v~~~ 283 (815)
+.+++|+++++++|++++.+ +..+++...+|+.+ +.+++|+||||||||++|+++|+.+. .+++.+++.
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 45799999999999999887 44567777778754 34699999999999999999998752 358899999
Q ss_pred hhhhhhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCC-
Q 003503 284 EIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN- 362 (815)
Q Consensus 284 ~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~- 362 (815)
++.+.+.|+++..++.+|+.+. .++|||||++.+...++ .......++..|+.+|+... ..++||++++...
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~--~~~~~~e~~~~L~~~me~~~--~~~~vI~ag~~~~~ 173 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN--ERDYGSEAIEILLQVMENQR--DDLVVIFAGYKDRM 173 (287)
T ss_pred HHHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC--ccchHHHHHHHHHHHHhcCC--CCEEEEEeCCcHHH
Confidence 9999999988888888888764 36999999999865432 22345677888999887543 4566766665321
Q ss_pred ----CCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCc--cccchh---hhHHHhh--cCCCc-HHHHHHHHHHHH
Q 003503 363 ----SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMK--LAEDVD---LERVAKD--THGYV-GSDLAALCTEAA 430 (815)
Q Consensus 363 ----~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~--l~~~~~---l~~la~~--t~g~~-~~dl~~l~~~a~ 430 (815)
.++|++++ ||+..++|+.++.+++.+|+..++++.. +..+.. ...+... ...|. ++++..++..+.
T Consensus 174 ~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~ 251 (287)
T CHL00181 174 DKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRAR 251 (287)
T ss_pred HHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 34688988 9999999999999999999998876543 333221 1222221 23454 788999888887
Q ss_pred HHhHHhh
Q 003503 431 LQCIREK 437 (815)
Q Consensus 431 ~~~~~~~ 437 (815)
.....+.
T Consensus 252 ~~~~~r~ 258 (287)
T CHL00181 252 MRQANRI 258 (287)
T ss_pred HHHHHHH
Confidence 7655443
No 85
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.75 E-value=3.2e-17 Score=174.78 Aligned_cols=211 Identities=18% Similarity=0.288 Sum_probs=156.1
Q ss_pred cccChHHHHHHHHHHHHcccCChhhHhhhCCCC---CceEEEECCCCCcHHHHHHHHHHHhC-------CeEEEEechhh
Q 003503 216 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKP---PKGILLYGPPGSGKTLIARAVANETG-------AFFFLINGPEI 285 (815)
Q Consensus 216 ~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~---~~~VLL~GppGtGKTtLar~la~~l~-------~~~i~v~~~~l 285 (815)
+++|+++++++|++++.+ +..++.+..+|+.+ +.+++|+||||||||++|++++..+. .+++.+++.++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 699999999999999988 66777888888764 45899999999999999999998763 36889999999
Q ss_pred hhhhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCC--CC-
Q 003503 286 MSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNR--PN- 362 (815)
Q Consensus 286 ~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~--~~- 362 (815)
.+.+.|+++..++.+|+.+.. ++|||||++.+...++ .......+...|+..|+... ..++||++++. ++
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~--~~~~~~~~~~~Ll~~le~~~--~~~~vI~a~~~~~~~~ 174 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDN--ERDYGQEAIEILLQVMENQR--DDLVVILAGYKDRMDS 174 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCC--ccchHHHHHHHHHHHHhcCC--CCEEEEEeCCcHHHHH
Confidence 888889888888888888743 6999999999864432 12344567788888887543 45667766553 22
Q ss_pred --CCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhhHHHhh-----c-CCC-cHHHHHHHHHHHHHH
Q 003503 363 --SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKD-----T-HGY-VGSDLAALCTEAALQ 432 (815)
Q Consensus 363 --~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~-----t-~g~-~~~dl~~l~~~a~~~ 432 (815)
.++|++++ ||...++++.++.+++..|++.++++.... ....+..+... . +.+ .++.+.+++..+...
T Consensus 175 ~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 175 FFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLR 252 (284)
T ss_pred HHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHH
Confidence 34789988 999999999999999999999887764321 11122222222 1 222 357788888777665
Q ss_pred hHHh
Q 003503 433 CIRE 436 (815)
Q Consensus 433 ~~~~ 436 (815)
...+
T Consensus 253 ~~~r 256 (284)
T TIGR02880 253 QANR 256 (284)
T ss_pred HHHH
Confidence 5443
No 86
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.73 E-value=2.5e-17 Score=163.81 Aligned_cols=190 Identities=26% Similarity=0.400 Sum_probs=124.5
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchhhhc
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 562 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~ 562 (815)
.+-+++|++|+++++..+.-.+..... .-....+++||||||+||||||+.+|++++.+|..++++.+-
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~--------r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~--- 87 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKK--------RGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE--- 87 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHC--------TTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC-----
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHh--------cCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh---
Confidence 345789999999999887655432111 112345799999999999999999999999999999887542
Q ss_pred cCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCC-----C-----------CC
Q 003503 563 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN-----A-----------KK 626 (815)
Q Consensus 563 ~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----~-----------~~ 626 (815)
....+..++..... ..|||+|||+.+.. .+...|+..|+... + ..
T Consensus 88 ---k~~dl~~il~~l~~--~~ILFIDEIHRlnk--------------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 88 ---KAGDLAAILTNLKE--GDILFIDEIHRLNK--------------AQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp ---SCHHHHHHHHT--T--T-EEEECTCCC--H--------------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred ---hHHHHHHHHHhcCC--CcEEEEechhhccH--------------HHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 23445555555543 46999999999842 34456677776532 1 13
Q ss_pred cEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHcCCCCHHHHHHHHHHH
Q 003503 627 TVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVD-LSALARYTHGFSGADITEVCQRA 705 (815)
Q Consensus 627 ~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~-~~~la~~t~g~sg~di~~l~~~a 705 (815)
++.+|+||++...|.+.|.. ||..+..+..++.++..+|++...+..++.-+.+ ..++|+++.| +++=-.++++++
T Consensus 149 ~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp --EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHH
T ss_pred CceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 58899999999999999998 9999999999999999999999888877764433 5677776665 665555555543
No 87
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.73 E-value=1.2e-16 Score=169.11 Aligned_cols=211 Identities=20% Similarity=0.266 Sum_probs=146.6
Q ss_pred cccccChHHHHHHHHHHHHcccCChhhHhhhCCC---CCceEEEECCCCCcHHHHHHHHHHHh-------CCeEEEEech
Q 003503 214 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK---PPKGILLYGPPGSGKTLIARAVANET-------GAFFFLINGP 283 (815)
Q Consensus 214 ~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~---~~~~VLL~GppGtGKTtLar~la~~l-------~~~~i~v~~~ 283 (815)
+++++|+++++++|++++.++... ......|.. ...+++|+|||||||||+|+++|+.+ ...++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 567999999999999998875433 222334554 23579999999999999999999874 2357888999
Q ss_pred hhhhhhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCC--
Q 003503 284 EIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRP-- 361 (815)
Q Consensus 284 ~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~-- 361 (815)
++.+.+.|+....++.+|+.+. .++|||||+|.+..... ....+..+..|+..|+... ..+++++++...
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~---~~~~~~~i~~Ll~~~e~~~--~~~~vila~~~~~~ 155 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGE---KDFGKEAIDTLVKGMEDNR--NEFVLILAGYSDEM 155 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCCc---cchHHHHHHHHHHHHhccC--CCEEEEecCCcchh
Confidence 9999999999999999998774 46999999999974321 1233456677888887643 344554443322
Q ss_pred ---CCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCc--cccchhhhHHHhh--------cC-CCcHHHHHHHHH
Q 003503 362 ---NSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMK--LAEDVDLERVAKD--------TH-GYVGSDLAALCT 427 (815)
Q Consensus 362 ---~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~--l~~~~~l~~la~~--------t~-g~~~~dl~~l~~ 427 (815)
..++|++++ ||...+.++.++.+++.+|++.++.... +.++ .+..++.. .. .-.++.+..++.
T Consensus 156 ~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~-a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e 232 (261)
T TIGR02881 156 DYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEE-AKWKLREHLYKVDQLSSREFSNARYVRNIIE 232 (261)
T ss_pred HHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHH-HHHHHHHHHHHHHhccCCCCchHHHHHHHHH
Confidence 246788887 8988999999999999999998876543 3222 23333221 11 123556666666
Q ss_pred HHHHHhHHh
Q 003503 428 EAALQCIRE 436 (815)
Q Consensus 428 ~a~~~~~~~ 436 (815)
.|......+
T Consensus 233 ~a~~~~~~r 241 (261)
T TIGR02881 233 KAIRRQAVR 241 (261)
T ss_pred HHHHHHHHH
Confidence 665544333
No 88
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.72 E-value=1.1e-16 Score=169.17 Aligned_cols=228 Identities=23% Similarity=0.361 Sum_probs=160.1
Q ss_pred CCcccccccccchhhh---hhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchh
Q 003503 483 PNVSWEDIGGLDNVKR---ELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 559 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~---~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~ 559 (815)
..-++++++|++++.. .|++.+. -....+++|||||||||||||++||+..+..|..++.-
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~-------------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv--- 82 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVE-------------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV--- 82 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHh-------------cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc---
Confidence 3556788888886642 2232222 12345699999999999999999999999999999873
Q ss_pred hhccCccHHHHHHHHHHHhhCC----CeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEec-
Q 003503 560 TMWFGESEANVREIFDKARQSA----PCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGAT- 634 (815)
Q Consensus 560 ~~~~g~se~~i~~~F~~a~~~~----p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aT- 634 (815)
-.+-+.++.+|++|++.. ..|||+|||+.+-... ...||-.|+ ++.+++||||
T Consensus 83 ----~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~Q--------------QD~lLp~vE----~G~iilIGATT 140 (436)
T COG2256 83 ----TSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQ--------------QDALLPHVE----NGTIILIGATT 140 (436)
T ss_pred ----cccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhh--------------hhhhhhhhc----CCeEEEEeccC
Confidence 246788999999996543 3799999999985331 244666665 5678888888
Q ss_pred -CCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhc--cCCCC------CcccHHHHHHHcCCCCHHHHHHHHHHH
Q 003503 635 -NRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLR--KSPIS------PDVDLSALARYTHGFSGADITEVCQRA 705 (815)
Q Consensus 635 -n~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~--~~~~~------~~~~~~~la~~t~g~sg~di~~l~~~a 705 (815)
|..-.+.+||++ |. +++.+.+.+.++..+++++.+. +.++. ++.-+..|+..+. +|.+.+++..
T Consensus 141 ENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~----GD~R~aLN~L 213 (436)
T COG2256 141 ENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSN----GDARRALNLL 213 (436)
T ss_pred CCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcC----chHHHHHHHH
Confidence 666779999998 76 4788999999999999988442 22333 1223455666444 4777655544
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCcccccccccccccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhcccCC
Q 003503 706 CKYAIRENIEKDIERERRKRENPEAMEEDEVDDVAEIKAVHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGF 779 (815)
Q Consensus 706 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~~~~~~y~~~~~~~~~~~~~ 779 (815)
-+.+.... ....+..+.+++.+....+.-....=..|.-++.-+++.||=
T Consensus 214 E~~~~~~~------------------------~~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGS 263 (436)
T COG2256 214 ELAALSAE------------------------PDEVLILELLEEILQRRSARFDKDGDAHYDLISALHKSVRGS 263 (436)
T ss_pred HHHHHhcC------------------------CCcccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHhhccC
Confidence 43332211 011344778888887776766777778899888888888874
No 89
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.71 E-value=4.9e-17 Score=196.24 Aligned_cols=204 Identities=26% Similarity=0.378 Sum_probs=143.6
Q ss_pred ccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchh--------
Q 003503 488 EDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------- 559 (815)
Q Consensus 488 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~-------- 559 (815)
+++.|++++|+.+.+.+...... +......++|+||||||||++|+++|+.++.+|+.++...+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 45889999999988866543211 111233699999999999999999999999999988754432
Q ss_pred -hhccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhcccc-----CC--------CC
Q 003503 560 -TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDG-----MN--------AK 625 (815)
Q Consensus 560 -~~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~-----~~--------~~ 625 (815)
..|+|.....+.+.|..+....| |+||||||.+.+.... + ..+.||..||. +. ..
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~---~-------~~~aLl~~ld~~~~~~f~d~~~~~~~d~ 461 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG---D-------PASALLEVLDPEQNNAFSDHYLDVPFDL 461 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC---C-------HHHHHHHhcCHHhcCccccccCCceecc
Confidence 36888888889999998876666 8999999999753211 1 23455665552 11 12
Q ss_pred CcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhc-----cCCCC------CcccHHHHHH-HcCCC
Q 003503 626 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLR-----KSPIS------PDVDLSALAR-YTHGF 693 (815)
Q Consensus 626 ~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~-----~~~~~------~~~~~~~la~-~t~g~ 693 (815)
+++++|+|||.++.|+++|++ ||+ +|+|+.|+.+++.+|++.++. ..++. .+..+..+++ ++..+
T Consensus 462 s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~ 538 (775)
T TIGR00763 462 SKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREA 538 (775)
T ss_pred CCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhc
Confidence 578999999999999999998 995 889999999999999988762 22222 1122444444 23334
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 003503 694 SGADITEVCQRACKYAIRE 712 (815)
Q Consensus 694 sg~di~~l~~~a~~~a~~~ 712 (815)
..++|+..+...+..+..+
T Consensus 539 g~R~l~r~i~~~~~~~~~~ 557 (775)
T TIGR00763 539 GVRNLERQIEKICRKAAVK 557 (775)
T ss_pred CChHHHHHHHHHHHHHHHH
Confidence 4456666555555554443
No 90
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.71 E-value=7.2e-17 Score=193.78 Aligned_cols=245 Identities=21% Similarity=0.273 Sum_probs=163.8
Q ss_pred cccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHh----------CCcEEEEe
Q 003503 485 VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVK 554 (815)
Q Consensus 485 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~----------~~~~i~v~ 554 (815)
-.++++.|.++....+.+.+ ......+++|+||||||||++++++|..+ +..++.++
T Consensus 179 ~~l~~~igr~~ei~~~~~~L-------------~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVL-------------CRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred CCCCcccCcHHHHHHHHHHH-------------hcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 35667777776555444333 22334679999999999999999999987 66788999
Q ss_pred ccchh--hhccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEE
Q 003503 555 GPELL--TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIG 632 (815)
Q Consensus 555 ~~~l~--~~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~ 632 (815)
...+. .+|.|+.++.++.+|+.+....++||||||+|.+.+.+..+.++ ..+.+.|+..|. .+.+.+||
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~-----~~~~~~L~~~l~----~g~i~~Ig 316 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGS-----MDASNLLKPALS----SGKLRCIG 316 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCcc-----HHHHHHHHHHHh----CCCeEEEE
Confidence 88887 58999999999999999987788999999999998765322111 122334444443 56799999
Q ss_pred ecCCCC-----CCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCC----CC-CcccHHHHHHHcCCCCHH-----H
Q 003503 633 ATNRPD-----IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSP----IS-PDVDLSALARYTHGFSGA-----D 697 (815)
Q Consensus 633 aTn~~~-----~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~----~~-~~~~~~~la~~t~g~sg~-----d 697 (815)
|||..+ .+|+|+.| ||. .|+++.|+.+++.+|++.....+. +. .+..+..++..+..|-+. -
T Consensus 317 aTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~k 393 (731)
T TIGR02639 317 STTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDK 393 (731)
T ss_pred ecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHH
Confidence 999743 47999999 997 799999999999999997775432 11 122344444444333221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccccHHHHHHHHhhcc----CCCCHHHHHHHHHHHHHH
Q 003503 698 ITEVCQRACKYAIRENIEKDIERERRKRENPEAMEEDEVDDVAEIKAVHFEESMKYAR----RSVSDADIRKYQLFAQTL 773 (815)
Q Consensus 698 i~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~----~svs~~~~~~y~~~~~~~ 773 (815)
-..++.+|+..+..+. .......|+.+|+..++.... ..++.++..++..+.+.+
T Consensus 394 ai~lld~a~a~~~~~~---------------------~~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l 452 (731)
T TIGR02639 394 AIDVIDEAGASFRLRP---------------------KAKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNL 452 (731)
T ss_pred HHHHHHHhhhhhhcCc---------------------ccccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHH
Confidence 1223333332111000 001123589999999988763 245667777777666655
Q ss_pred hc
Q 003503 774 QQ 775 (815)
Q Consensus 774 ~~ 775 (815)
..
T Consensus 453 ~~ 454 (731)
T TIGR02639 453 KA 454 (731)
T ss_pred hc
Confidence 43
No 91
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.1e-16 Score=163.47 Aligned_cols=149 Identities=32% Similarity=0.442 Sum_probs=124.9
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhC---------CeEEEEechhhhhhhhchhHHHHHHHHHHHHhc-----CCcEE
Q 003503 247 KPPKGILLYGPPGSGKTLIARAVANETG---------AFFFLINGPEIMSKLAGESESNLRKAFEEAEKN-----APSII 312 (815)
Q Consensus 247 ~~~~~VLL~GppGtGKTtLar~la~~l~---------~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~-----~p~il 312 (815)
.-.+-|||+||||||||+|+++||+.+. ...+.+|+..++++|.+++.+.+..+|++...- .-..+
T Consensus 175 t~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfv 254 (423)
T KOG0744|consen 175 TWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFV 254 (423)
T ss_pred eeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEE
Confidence 3456699999999999999999999874 235899999999999999999999999987542 12346
Q ss_pred EecccccccCCCCCc----hhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHH
Q 003503 313 FIDELDSIAPKREKT----HGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGR 388 (815)
Q Consensus 313 ~iDEid~l~~~~~~~----~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R 388 (815)
+|||++.++..|... .....-|+++.+++.+|.++...+|++++|+|-.+.+|.|+.. |-|-..+++.|+...+
T Consensus 255 LIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai 332 (423)
T KOG0744|consen 255 LIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAI 332 (423)
T ss_pred EeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHH
Confidence 799999997665221 1123358999999999999999999999999999999999987 8888999999999999
Q ss_pred HHHHHHHhc
Q 003503 389 LEILRIHTK 397 (815)
Q Consensus 389 ~~il~~~~~ 397 (815)
++|++....
T Consensus 333 ~~Ilkscie 341 (423)
T KOG0744|consen 333 YEILKSCIE 341 (423)
T ss_pred HHHHHHHHH
Confidence 999986543
No 92
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=6.2e-16 Score=161.92 Aligned_cols=176 Identities=32% Similarity=0.584 Sum_probs=132.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCc-EEEecccccccCCCCC
Q 003503 248 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPS-IIFIDELDSIAPKREK 326 (815)
Q Consensus 248 ~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~-il~iDEid~l~~~~~~ 326 (815)
+=++|++|||||||||++||-||...|..+-...|.++.. .-.+.-..+..+|.-+...... +|||||.|.++-.+..
T Consensus 383 pfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnk 461 (630)
T KOG0742|consen 383 PFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNK 461 (630)
T ss_pred hhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhch
Confidence 3467999999999999999999999999988888877632 2234456789999999876554 6799999988776654
Q ss_pred c-hhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcc----
Q 003503 327 T-HGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL---- 401 (815)
Q Consensus 327 ~-~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l---- 401 (815)
. -++..+..++.|+-.- | .+...++++.+||+|..+|.++.. |++..++|+.|..++|..+|..++.++-+
T Consensus 462 tymSEaqRsaLNAlLfRT-G-dqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~ 537 (630)
T KOG0742|consen 462 TYMSEAQRSALNALLFRT-G-DQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPAT 537 (630)
T ss_pred hhhcHHHHHHHHHHHHHh-c-ccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCC
Confidence 3 3444444455544222 1 223457777899999999999987 99999999999999999999977654321
Q ss_pred --------------------cc---chhhhHHHhhcCCCcHHHHHHHHHH
Q 003503 402 --------------------AE---DVDLERVAKDTHGYVGSDLAALCTE 428 (815)
Q Consensus 402 --------------------~~---~~~l~~la~~t~g~~~~dl~~l~~~ 428 (815)
.. +..+.+.+..|+||+|++|..|+..
T Consensus 538 ~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~ 587 (630)
T KOG0742|consen 538 SGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVAS 587 (630)
T ss_pred CCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 11 1125678889999999999888653
No 93
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.68 E-value=1.5e-15 Score=166.10 Aligned_cols=233 Identities=22% Similarity=0.314 Sum_probs=162.8
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchhhhcc
Q 003503 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 563 (815)
Q Consensus 484 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~~ 563 (815)
..+|+++.|.++.++.|...+.... . .-.++.+++|+||||||||++|+++|++++..+..++++.+.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~-------~-~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~---- 88 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAK-------K-RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE---- 88 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHH-------h-cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc----
Confidence 3478999999999998877654211 1 113456799999999999999999999999888777766432
Q ss_pred CccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCC----------------CCCc
Q 003503 564 GESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN----------------AKKT 627 (815)
Q Consensus 564 g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~----------------~~~~ 627 (815)
....+..++.... .+++|||||||.+... ..+.+ ...|+... ...+
T Consensus 89 --~~~~l~~~l~~l~--~~~vl~IDEi~~l~~~-----------~~e~l---~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 89 --KPGDLAAILTNLE--EGDVLFIDEIHRLSPV-----------VEEIL---YPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred --ChHHHHHHHHhcc--cCCEEEEecHhhcchH-----------HHHHH---HHHHHhcceeeeeccCccccceeecCCC
Confidence 2234555555443 4579999999998421 12222 22232210 1124
Q ss_pred EEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHcCCCCHHHHHHHHHHHH
Q 003503 628 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGFSGADITEVCQRAC 706 (815)
Q Consensus 628 v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~t~g~sg~di~~l~~~a~ 706 (815)
+.+|++||++..+++++.+ ||+..+.+++|+.+++.+|++..+...++.-+ .-+..+++.+.| +.+.+..+++.+.
T Consensus 151 ~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~~ 227 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRRVR 227 (328)
T ss_pred ceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHHH
Confidence 7889999999999999987 99999999999999999999998877655422 236788887776 4477777777766
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcccccccccccccccHHHHHHHHhhccC---CCCHHHHHHHHHHHHHHh
Q 003503 707 KYAIRENIEKDIERERRKRENPEAMEEDEVDDVAEIKAVHFEESMKYARR---SVSDADIRKYQLFAQTLQ 774 (815)
Q Consensus 707 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~---svs~~~~~~y~~~~~~~~ 774 (815)
..|..+. ...|+.++...++..+.. .++..+.+.+..+.+.|.
T Consensus 228 ~~a~~~~-------------------------~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~ 273 (328)
T PRK00080 228 DFAQVKG-------------------------DGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFG 273 (328)
T ss_pred HHHHHcC-------------------------CCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcC
Confidence 5554321 125778888888877643 455666666666666664
No 94
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.67 E-value=1.8e-15 Score=164.21 Aligned_cols=191 Identities=24% Similarity=0.335 Sum_probs=133.6
Q ss_pred ccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchhhhccCc
Q 003503 486 SWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 565 (815)
Q Consensus 486 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~~g~ 565 (815)
+|+++.|++++++.|...+..... ....+.+++|+||||||||++|+++|++++.++..+.++.+..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM--------RQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 589999999999998876642111 1123456999999999999999999999998876666543321
Q ss_pred cHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCC----------------CCCcEE
Q 003503 566 SEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN----------------AKKTVF 629 (815)
Q Consensus 566 se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~----------------~~~~v~ 629 (815)
...+...+... ..+.++||||++.+... ..+.|+..|+... ...+++
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l~~~--------------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 131 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRLSPA--------------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFT 131 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhhCHH--------------HHHHhhHHHhhhheeeeeccCccccceeecCCCeE
Confidence 12233333332 23579999999998532 1122333333211 123478
Q ss_pred EEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 003503 630 IIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGFSGADITEVCQRACKY 708 (815)
Q Consensus 630 vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~t~g~sg~di~~l~~~a~~~ 708 (815)
+|++||++..+++++.+ ||...+.+++|+.+++.+|++..+...++.- +..+..+++.+.|. .+.+.+++..+...
T Consensus 132 li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~-pR~~~~ll~~~~~~ 208 (305)
T TIGR00635 132 LVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGT-PRIANRLLRRVRDF 208 (305)
T ss_pred EEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCC-cchHHHHHHHHHHH
Confidence 99999999999999988 9998999999999999999998887654432 23367788887764 46777777766544
Q ss_pred H
Q 003503 709 A 709 (815)
Q Consensus 709 a 709 (815)
|
T Consensus 209 a 209 (305)
T TIGR00635 209 A 209 (305)
T ss_pred H
Confidence 4
No 95
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.1e-15 Score=164.55 Aligned_cols=179 Identities=26% Similarity=0.352 Sum_probs=135.7
Q ss_pred CCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhhhc
Q 003503 212 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAG 291 (815)
Q Consensus 212 ~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g 291 (815)
-+|+.+.=-.+.++.|.+=+.-..+..+.++..|..-.+|.|||||||||||+++-|+|+.++..++.++-.++..
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~---- 273 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL---- 273 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC----
Confidence 3455444444556666555555567788999999999999999999999999999999999999988887654422
Q ss_pred hhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchh---H----HHHHHHHHHHHhhhcccCCC--cEEEEEecCCCC
Q 003503 292 ESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHG---E----VERRIVSQLLTLMDGLKSRA--HVIVMGATNRPN 362 (815)
Q Consensus 292 ~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~---~----~~~~v~~~Ll~~ld~~~~~~--~vivi~atn~~~ 362 (815)
... ++.++-... ..+||+|++||.-+.-+..... + ...-..+.|++.+||+.+.. .-++|.|||..+
T Consensus 274 -n~d-Lr~LL~~t~--~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E 349 (457)
T KOG0743|consen 274 -DSD-LRHLLLATP--NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE 349 (457)
T ss_pred -cHH-HHHHHHhCC--CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence 122 666666543 3479999999987653322111 1 12234678999999998765 567778999999
Q ss_pred CCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcC
Q 003503 363 SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKN 398 (815)
Q Consensus 363 ~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~ 398 (815)
.|||||.|+||.|..|+++.-+...-..+.+.++.-
T Consensus 350 kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~ 385 (457)
T KOG0743|consen 350 KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGI 385 (457)
T ss_pred hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCC
Confidence 999999999999999999999999888888776643
No 96
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.66 E-value=7.6e-16 Score=182.44 Aligned_cols=176 Identities=24% Similarity=0.307 Sum_probs=130.0
Q ss_pred CCcceEEeCCCCCChhHHHHHHHHHh----------CCcEEEEeccchh--hhccCccHHHHHHHHHHHhhCCCeEEEEe
Q 003503 521 PSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELL--TMWFGESEANVREIFDKARQSAPCVLFFD 588 (815)
Q Consensus 521 ~~~gilL~GppGtGKT~lakala~~~----------~~~~i~v~~~~l~--~~~~g~se~~i~~~F~~a~~~~p~ilfiD 588 (815)
...++||+||||||||++|+++|... +..++.++...++ .+|.|+.++.++.+|..+.+..++|||||
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfID 285 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFID 285 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEec
Confidence 34568999999999999999999874 3456666666665 57889999999999999988888999999
Q ss_pred cchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCC-----CCCccccCCCCCcceeeccCCCHHH
Q 003503 589 ELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPD-----IIDPALLRPGRLDQLIYIPLPDEAS 663 (815)
Q Consensus 589 Eid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~-----~ld~allr~gRf~~~i~~~~p~~~~ 663 (815)
||+.+++.++.+.+ ...+.+.|...+ ..+.+.||+|||.++ .+|++|.| ||+ .|+++.|+.++
T Consensus 286 EIh~L~g~g~~~~g-----~~d~~nlLkp~L----~~g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~ 353 (758)
T PRK11034 286 EIHTIIGAGAASGG-----QVDAANLIKPLL----SSGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEE 353 (758)
T ss_pred cHHHHhccCCCCCc-----HHHHHHHHHHHH----hCCCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHH
Confidence 99999876532211 112222222222 356799999999875 47999999 996 79999999999
Q ss_pred HHHHHHHHhccCCCCCcccHHH-----HHHHc-----CCCCHHHHHHHHHHHHHH
Q 003503 664 RLQIFKACLRKSPISPDVDLSA-----LARYT-----HGFSGADITEVCQRACKY 708 (815)
Q Consensus 664 r~~Il~~~l~~~~~~~~~~~~~-----la~~t-----~g~sg~di~~l~~~a~~~ 708 (815)
+..|++....++....++.+.. .+..+ ..+-+.....++.+|+..
T Consensus 354 ~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~ 408 (758)
T PRK11034 354 TVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGAR 408 (758)
T ss_pred HHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHh
Confidence 9999999887766555554432 22222 333445677788888754
No 97
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.65 E-value=4.8e-15 Score=147.63 Aligned_cols=183 Identities=26% Similarity=0.425 Sum_probs=120.1
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM 286 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~ 286 (815)
+.+.+-+++|+.|+++.++.++-++...... -.+-.++|||||||+||||||+.||++++..+...+++.+.
T Consensus 16 ~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~ 87 (233)
T PF05496_consen 16 ERLRPKSLDEFIGQEHLKGNLKILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE 87 (233)
T ss_dssp HHTS-SSCCCS-S-HHHHHHHHHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--
T ss_pred HhcCCCCHHHccCcHHHHhhhHHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh
Confidence 4678889999999999999887666532111 12346899999999999999999999999999988886542
Q ss_pred hhhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccC----------------CC
Q 003503 287 SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKS----------------RA 350 (815)
Q Consensus 287 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~----------------~~ 350 (815)
. ...+..++.... ...||||||||.+. +...+.|+..|+...- -.
T Consensus 88 k------~~dl~~il~~l~--~~~ILFIDEIHRln-----------k~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 88 K------AGDLAAILTNLK--EGDILFIDEIHRLN-----------KAQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp S------CHHHHHHHHT----TT-EEEECTCCC-------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred h------HHHHHHHHHhcC--CCcEEEEechhhcc-----------HHHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 1 122334444433 35699999999985 3345667777764321 13
Q ss_pred cEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcccc-chhhhHHHhhcCCCc
Q 003503 351 HVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAE-DVDLERVAKDTHGYV 418 (815)
Q Consensus 351 ~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~-~~~l~~la~~t~g~~ 418 (815)
++.+||+|++...+...|+. ||.....+..++.++...|++...+.+.+.- +....++|.++.|..
T Consensus 149 ~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtP 215 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTP 215 (233)
T ss_dssp --EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSH
T ss_pred CceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCCh
Confidence 68899999999999999997 9988889999999999999986665555432 334677888777753
No 98
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.64 E-value=5.7e-15 Score=149.27 Aligned_cols=233 Identities=23% Similarity=0.345 Sum_probs=167.2
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchhhhcc
Q 003503 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 563 (815)
Q Consensus 484 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~~ 563 (815)
.-.|++-.|++++|++|.-.+....... ...-++|||||||.||||||..+|++++.++-..+++-+
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~l----- 88 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL----- 88 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccc-----
Confidence 4568889999999999987765433322 334469999999999999999999999999988888876
Q ss_pred CccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCC----------------CCCc
Q 003503 564 GESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN----------------AKKT 627 (815)
Q Consensus 564 g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~----------------~~~~ 627 (815)
+....+..++...... +|+|||||+++.+ ...+++ ...|+.+. ...+
T Consensus 89 -eK~gDlaaiLt~Le~~--DVLFIDEIHrl~~-----------~vEE~L---YpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 89 -EKPGDLAAILTNLEEG--DVLFIDEIHRLSP-----------AVEEVL---YPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred -cChhhHHHHHhcCCcC--CeEEEehhhhcCh-----------hHHHHh---hhhhhheeEEEEEccCCccceEeccCCC
Confidence 3445566677766544 6999999999843 233333 34455432 1246
Q ss_pred EEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHHcCCCCHHHHHHHHHHHH
Q 003503 628 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSALARYTHGFSGADITEVCQRAC 706 (815)
Q Consensus 628 v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-~~~~la~~t~g~sg~di~~l~~~a~ 706 (815)
+.+||||.+...|-..|.. ||.....+..++.++..+|+++..+.+.+.-+. ...++|+++.| +++=-..++++.-
T Consensus 152 FTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVR 228 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVR 228 (332)
T ss_pred eeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHH
Confidence 8899999999999999987 999999999999999999999998887766433 35678887775 5554445666655
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcccccccccccccccHHHHHHHHhhc---cCCCCHHHHHHHHHHHHHHh
Q 003503 707 KYAIRENIEKDIERERRKRENPEAMEEDEVDDVAEIKAVHFEESMKYA---RRSVSDADIRKYQLFAQTLQ 774 (815)
Q Consensus 707 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~---~~svs~~~~~~y~~~~~~~~ 774 (815)
-.|..+. ...|+.+-..+|++.+ .-.+..-+.+..+.+.++|.
T Consensus 229 Dfa~V~~-------------------------~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~ 274 (332)
T COG2255 229 DFAQVKG-------------------------DGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFG 274 (332)
T ss_pred HHHHHhc-------------------------CCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhC
Confidence 5554332 1245555555566554 33455666666666666664
No 99
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.4e-14 Score=162.93 Aligned_cols=202 Identities=25% Similarity=0.353 Sum_probs=151.8
Q ss_pred ccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchh--------
Q 003503 488 EDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------- 559 (815)
Q Consensus 488 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~-------- 559 (815)
.|-.|++++|+.+.+.+...... +-....-++|+||||+|||+|++.+|..++..|+.++..-+.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~-------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLT-------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHh-------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 45679999999998876532111 111112389999999999999999999999999998754332
Q ss_pred -hhccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccC-------------CCC
Q 003503 560 -TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGM-------------NAK 625 (815)
Q Consensus 560 -~~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~-------------~~~ 625 (815)
..|+|.....+-+-..+|....| ++++||||.+...- .++.. +.||.-||-- -..
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~---rGDPa-------SALLEVLDPEQN~~F~DhYLev~yDL 464 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSF---RGDPA-------SALLEVLDPEQNNTFSDHYLEVPYDL 464 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCC---CCChH-------HHHHhhcCHhhcCchhhccccCccch
Confidence 35999999999999999999888 99999999996532 12212 3344444421 134
Q ss_pred CcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhc-----cCCCCCcccHHHHHHHcCCCCHHHHHH
Q 003503 626 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLR-----KSPISPDVDLSALARYTHGFSGADITE 700 (815)
Q Consensus 626 ~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~-----~~~~~~~~~~~~la~~t~g~sg~di~~ 700 (815)
++|++|||.|..+.|..+|+. |+. +|.++-++.++..+|.+.||= ..++..+ .-.|+..-|..
T Consensus 465 S~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~---------el~i~d~ai~~ 532 (782)
T COG0466 465 SKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKG---------ELTITDEAIKD 532 (782)
T ss_pred hheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchHHHHHcCCCcc---------ceeecHHHHHH
Confidence 689999999999999999998 985 999999999999999999882 2233321 12377788888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003503 701 VCQRACKYAIRENIEKDIE 719 (815)
Q Consensus 701 l~~~a~~~a~~~~~~~~~~ 719 (815)
+++.....|-.|++++.+.
T Consensus 533 iI~~YTREAGVR~LeR~i~ 551 (782)
T COG0466 533 IIRYYTREAGVRNLEREIA 551 (782)
T ss_pred HHHHHhHhhhhhHHHHHHH
Confidence 8888888888888777653
No 100
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.3e-13 Score=161.90 Aligned_cols=158 Identities=25% Similarity=0.365 Sum_probs=103.9
Q ss_pred ccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC----------CeEEEEechhhh
Q 003503 217 VGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG----------AFFFLINGPEIM 286 (815)
Q Consensus 217 i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~----------~~~i~v~~~~l~ 286 (815)
+|+.++.++.+.+++.. ...++-+|+|.||+|||.++.-+++.+- ..++.++-..+.
T Consensus 189 igr~deeirRvi~iL~R-------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~ 255 (898)
T KOG1051|consen 189 IGRHDEEIRRVIEILSR-------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLV 255 (898)
T ss_pred cCCchHHHHHHHHHHhc-------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcc
Confidence 34447776666665542 2346789999999999999999998751 233444443332
Q ss_pred --hhhhchhHHHHHHHHHHHH-hcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCC-
Q 003503 287 --SKLAGESESNLRKAFEEAE-KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN- 362 (815)
Q Consensus 287 --~~~~g~~~~~l~~vf~~a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~- 362 (815)
.++.|+.+.+++.+...+. .+...|||+||++-+....... +. -...+.|... ..++.+.+||+|..-.
T Consensus 256 aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~-~~--~d~~nlLkp~----L~rg~l~~IGatT~e~Y 328 (898)
T KOG1051|consen 256 AGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNY-GA--IDAANLLKPL----LARGGLWCIGATTLETY 328 (898)
T ss_pred cCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcc-hH--HHHHHhhHHH----HhcCCeEEEecccHHHH
Confidence 3567889999999999988 4456788999999998765441 11 1122222222 2345588888776221
Q ss_pred ----CCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhc
Q 003503 363 ----SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTK 397 (815)
Q Consensus 363 ----~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~ 397 (815)
.-+|++.+ ||+. +.++.|.......||.....
T Consensus 329 ~k~iekdPalEr--rw~l-~~v~~pS~~~~~~iL~~l~~ 364 (898)
T KOG1051|consen 329 RKCIEKDPALER--RWQL-VLVPIPSVENLSLILPGLSE 364 (898)
T ss_pred HHHHhhCcchhh--Ccce-eEeccCcccchhhhhhhhhh
Confidence 34888888 7854 57888887776666654433
No 101
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.58 E-value=2.3e-14 Score=159.26 Aligned_cols=223 Identities=20% Similarity=0.297 Sum_probs=145.5
Q ss_pred cccccchhhhhhhccccCCCCChhh-hhh-hcC-CCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchh-hhccC
Q 003503 489 DIGGLDNVKRELQETVQYPVEHPEK-FEK-FGM-SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMWFG 564 (815)
Q Consensus 489 ~i~g~~~~k~~l~~~i~~~~~~~~~-~~~-~~~-~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~-~~~~g 564 (815)
.|+|++.+++.|...+......... ... -.. .+..++||+||||||||++|+++|..++.+|+.+++..+. ..|+|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 3889999999886554221111000 000 011 1345699999999999999999999999999999998875 46888
Q ss_pred ccHHH-HHHHHHHH----hhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCC-----------CCCcE
Q 003503 565 ESEAN-VREIFDKA----RQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN-----------AKKTV 628 (815)
Q Consensus 565 ~se~~-i~~~F~~a----~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----------~~~~v 628 (815)
+.... +..+++.+ ....++||||||||.+...+.+.+....-....+.+.||+.|++-. .....
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~ 231 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEF 231 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCe
Confidence 86444 45555432 2346789999999999876433222222223468899999998631 11245
Q ss_pred EEEEecCCCCC----------------------------------------------------CCccccCCCCCcceeec
Q 003503 629 FIIGATNRPDI----------------------------------------------------IDPALLRPGRLDQLIYI 656 (815)
Q Consensus 629 ~vi~aTn~~~~----------------------------------------------------ld~allr~gRf~~~i~~ 656 (815)
++|.|+|-... +.|+|+ ||+|.+++|
T Consensus 232 ~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~iv~f 309 (412)
T PRK05342 232 IQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPVVATL 309 (412)
T ss_pred EEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCeeeec
Confidence 66777665110 234555 699999999
Q ss_pred cCCCHHHHHHHHHH----Hhc-------cCCCCCccc---HHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH
Q 003503 657 PLPDEASRLQIFKA----CLR-------KSPISPDVD---LSALARY--THGFSGADITEVCQRACKYAIREN 713 (815)
Q Consensus 657 ~~p~~~~r~~Il~~----~l~-------~~~~~~~~~---~~~la~~--t~g~sg~di~~l~~~a~~~a~~~~ 713 (815)
.+.+.++..+|+.. .++ ..++.-.++ +..|++. ..++-.+.|+.++++.....+.+.
T Consensus 310 ~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~ 382 (412)
T PRK05342 310 EELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFEL 382 (412)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhc
Confidence 99999999999973 332 222222222 4556664 345556788888888777776554
No 102
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.8e-14 Score=160.77 Aligned_cols=165 Identities=27% Similarity=0.436 Sum_probs=128.8
Q ss_pred ccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchh--------
Q 003503 488 EDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------- 559 (815)
Q Consensus 488 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~-------- 559 (815)
+|-.|++++|+.+.+.+...... |-...+-++|+||||.|||++++.||..++..|+.++..-+.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 56789999999998887542211 222233489999999999999999999999999988754332
Q ss_pred -hhccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccC-------------CCC
Q 003503 560 -TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGM-------------NAK 625 (815)
Q Consensus 560 -~~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~-------------~~~ 625 (815)
..|+|.....+-+..++.....| +++|||||.+.. +. .++.. +.||..||-- -..
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~--g~-qGDPa-------sALLElLDPEQNanFlDHYLdVp~DL 552 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS--GH-QGDPA-------SALLELLDPEQNANFLDHYLDVPVDL 552 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC--CC-CCChH-------HHHHHhcChhhccchhhhccccccch
Confidence 35999999999999999988888 899999999973 22 12211 3344444421 234
Q ss_pred CcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhc
Q 003503 626 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLR 673 (815)
Q Consensus 626 ~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~ 673 (815)
.+|++|||.|..+.|.++|+. |+. +|.++-+..++...|.+.+|-
T Consensus 553 SkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 553 SKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred hheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhh
Confidence 689999999999999999998 984 899999999999999999883
No 103
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.55 E-value=1e-13 Score=156.35 Aligned_cols=179 Identities=27% Similarity=0.429 Sum_probs=124.4
Q ss_pred cccccccccchhhhh---hhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchhhh
Q 003503 485 VSWEDIGGLDNVKRE---LQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 561 (815)
Q Consensus 485 ~~~~~i~g~~~~k~~---l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~ 561 (815)
-+++++.|++++... |.+.+.. ....+++|+||||||||++|+++|..++..|+.+++...
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~--- 72 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS--- 72 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc---
Confidence 457888888877554 6555432 123469999999999999999999999999999887532
Q ss_pred ccCccHHHHHHHHHHHh----hCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEec--C
Q 003503 562 WFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGAT--N 635 (815)
Q Consensus 562 ~~g~se~~i~~~F~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aT--n 635 (815)
....++.+++.+. .....+|||||+|.+.. ...+.|+..++. +.+++|++| |
T Consensus 73 ----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~--------------~~q~~LL~~le~----~~iilI~att~n 130 (413)
T PRK13342 73 ----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK--------------AQQDALLPHVED----GTITLIGATTEN 130 (413)
T ss_pred ----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH--------------HHHHHHHHHhhc----CcEEEEEeCCCC
Confidence 3345666666663 22457999999999742 223456666552 456777665 3
Q ss_pred CCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccC-----CCCCcccHHHHHHHcCCCCHHHHHHHHHHHH
Q 003503 636 RPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS-----PISPDVDLSALARYTHGFSGADITEVCQRAC 706 (815)
Q Consensus 636 ~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~-----~~~~~~~~~~la~~t~g~sg~di~~l~~~a~ 706 (815)
....+++++++ |+ .++.|++++.++...+++..+... .++ +..+..+++.+. .+.+.+.++++.++
T Consensus 131 ~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~-~~al~~l~~~s~-Gd~R~aln~Le~~~ 201 (413)
T PRK13342 131 PSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELD-DEALDALARLAN-GDARRALNLLELAA 201 (413)
T ss_pred hhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 34578999998 88 689999999999999999877542 222 223556666653 35555556665554
No 104
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.55 E-value=3.1e-14 Score=154.53 Aligned_cols=176 Identities=27% Similarity=0.413 Sum_probs=128.8
Q ss_pred cccccchhhhhhhccccCCCCChhhhhhh-cCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchh-hhccC-c
Q 003503 489 DIGGLDNVKRELQETVQYPVEHPEKFEKF-GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMWFG-E 565 (815)
Q Consensus 489 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~-~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~-~~~~g-~ 565 (815)
.|.|+++.|+.+...+............+ .-..++++||+||||||||++|+++|..++.+|+.+++.++. ..|+| +
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 47888888888765544211111100000 112357899999999999999999999999999999999887 47888 5
Q ss_pred cHHHHHHHHHHHh-------------------------------------------------------------------
Q 003503 566 SEANVREIFDKAR------------------------------------------------------------------- 578 (815)
Q Consensus 566 se~~i~~~F~~a~------------------------------------------------------------------- 578 (815)
.+..++.+|..|.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 6777777777660
Q ss_pred ------------------------------------------------------------------------hCCCeEEE
Q 003503 579 ------------------------------------------------------------------------QSAPCVLF 586 (815)
Q Consensus 579 ------------------------------------------------------------------------~~~p~ilf 586 (815)
...-.|+|
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01235999
Q ss_pred EecchhhhhccCCCCCCCCchHHHHHHHHHhccccCC--------CCCcEEEEEecC----CCCCCCccccCCCCCccee
Q 003503 587 FDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN--------AKKTVFIIGATN----RPDIIDPALLRPGRLDQLI 654 (815)
Q Consensus 587 iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~--------~~~~v~vi~aTn----~~~~ld~allr~gRf~~~i 654 (815)
|||||+++.+.++.+.+.+ ..-|.+.||..|+|-. ..+++++||+.. .|+.|=|.|. |||..++
T Consensus 253 iDEiDKIa~~~~~~~~DvS--~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v 328 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVS--REGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRV 328 (441)
T ss_pred EEchhhhcccCCCCCCCCC--ccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEE
Confidence 9999999976533322322 3448899999999842 346788888874 5666777777 7999999
Q ss_pred eccCCCHHHHHHHH
Q 003503 655 YIPLPDEASRLQIF 668 (815)
Q Consensus 655 ~~~~p~~~~r~~Il 668 (815)
.+.+++.++...||
T Consensus 329 ~L~~L~~edL~rIL 342 (441)
T TIGR00390 329 ELQALTTDDFERIL 342 (441)
T ss_pred ECCCCCHHHHHHHh
Confidence 99999999999888
No 105
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.1e-13 Score=159.06 Aligned_cols=188 Identities=20% Similarity=0.289 Sum_probs=136.6
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCC--------------
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-------------- 548 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~-------------- 548 (815)
..-+|++|+|++.+++.|+..+... +.+..+||+||+|||||++++++|+.+.+
T Consensus 11 RPqtFdEVIGQe~Vv~~L~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~s 78 (830)
T PRK07003 11 RPKDFASLVGQEHVVRALTHALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRA 78 (830)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHH
Confidence 3567999999999999998776431 23456899999999999999999998753
Q ss_pred ----------cEEEEeccchhhhccCccHHHHHHHHHHHhh----CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHH
Q 003503 549 ----------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQ 614 (815)
Q Consensus 549 ----------~~i~v~~~~l~~~~~g~se~~i~~~F~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~ 614 (815)
.++.++..+ ...-..++++.+.+.. ....|+||||+|.|. ....|.
T Consensus 79 Cr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT--------------~~A~NA 138 (830)
T PRK07003 79 CREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT--------------NHAFNA 138 (830)
T ss_pred HHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCC--------------HHHHHH
Confidence 233333321 1123446666665532 345799999999983 234678
Q ss_pred HHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHcCCC
Q 003503 615 LLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGF 693 (815)
Q Consensus 615 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~t~g~ 693 (815)
||+.|+.. ..++.+|.+||.++.|.+.+++ |+ .++.|..++.++..++|+..+++.++.- +..+..|++...|
T Consensus 139 LLKtLEEP--P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G- 212 (830)
T PRK07003 139 MLKTLEEP--PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG- 212 (830)
T ss_pred HHHHHHhc--CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 88888743 4467888888889999999987 88 5899999999999999999887766542 3346677777665
Q ss_pred CHHHHHHHHHHHHHH
Q 003503 694 SGADITEVCQRACKY 708 (815)
Q Consensus 694 sg~di~~l~~~a~~~ 708 (815)
+.++..+++..+..+
T Consensus 213 smRdALsLLdQAia~ 227 (830)
T PRK07003 213 SMRDALSLTDQAIAY 227 (830)
T ss_pred CHHHHHHHHHHHHHh
Confidence 667777776666543
No 106
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.54 E-value=4e-14 Score=153.72 Aligned_cols=176 Identities=26% Similarity=0.422 Sum_probs=129.2
Q ss_pred cccccchhhhhhhccccCCCCChhhhhhhcC-CCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchhh-hccC-c
Q 003503 489 DIGGLDNVKRELQETVQYPVEHPEKFEKFGM-SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-MWFG-E 565 (815)
Q Consensus 489 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~-~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~~-~~~g-~ 565 (815)
.|.|+++.|+.+...+............... ..+.++||+||||||||++|++||..++.+|+.+++.++.. .|+| +
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 4789999998887665321111100000000 12467999999999999999999999999999999998885 6999 5
Q ss_pred cHHHHHHHHHHHh-------------------------------------------------------------------
Q 003503 566 SEANVREIFDKAR------------------------------------------------------------------- 578 (815)
Q Consensus 566 se~~i~~~F~~a~------------------------------------------------------------------- 578 (815)
.+..++.+|+.|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 5677777777771
Q ss_pred ---h--------------------------------------------------------------------CCCeEEEE
Q 003503 579 ---Q--------------------------------------------------------------------SAPCVLFF 587 (815)
Q Consensus 579 ---~--------------------------------------------------------------------~~p~ilfi 587 (815)
. ..-.|+||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0 12359999
Q ss_pred ecchhhhhccCCCCCCCCchHHHHHHHHHhccccCC--------CCCcEEEEEecC----CCCCCCccccCCCCCcceee
Q 003503 588 DELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN--------AKKTVFIIGATN----RPDIIDPALLRPGRLDQLIY 655 (815)
Q Consensus 588 DEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~--------~~~~v~vi~aTn----~~~~ld~allr~gRf~~~i~ 655 (815)
||||.++.+.++++.+. ...-|...||..|+|-. +.+++++||+.. .|+.|-|.|. |||..++.
T Consensus 256 DEiDKIa~~~~~~~~Dv--S~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~ 331 (443)
T PRK05201 256 DEIDKIAARGGSSGPDV--SREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVE 331 (443)
T ss_pred EcchhhcccCCCCCCCC--CccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEE
Confidence 99999997754322222 23458899999999842 346788888773 5667778888 69999999
Q ss_pred ccCCCHHHHHHHH
Q 003503 656 IPLPDEASRLQIF 668 (815)
Q Consensus 656 ~~~p~~~~r~~Il 668 (815)
+.+++.+....||
T Consensus 332 L~~L~~~dL~~IL 344 (443)
T PRK05201 332 LDALTEEDFVRIL 344 (443)
T ss_pred CCCCCHHHHHHHh
Confidence 9999999999888
No 107
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.54 E-value=1.2e-13 Score=166.97 Aligned_cols=164 Identities=23% Similarity=0.346 Sum_probs=122.5
Q ss_pred ccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh--------
Q 003503 215 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM-------- 286 (815)
Q Consensus 215 ~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~-------- 286 (815)
+++.|+++.++.|.+++..+... +-..+..+||+||||||||++|++||+.++.+++.++...+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 45889999999999887653222 112345799999999999999999999999999888754321
Q ss_pred -hhhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcc-----c--------CCCcE
Q 003503 287 -SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGL-----K--------SRAHV 352 (815)
Q Consensus 287 -~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~-----~--------~~~~v 352 (815)
..|.|.....+...|..+....| ++||||||.+.+..... ..+.|+..++.. . ...++
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~-------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD-------PASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC-------HHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 24556666677777877765555 89999999998643221 124455555531 1 11468
Q ss_pred EEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHh
Q 003503 353 IVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHT 396 (815)
Q Consensus 353 ivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~ 396 (815)
++|+|||..+.+++++++ || ..++++.|+.+++.+|++.++
T Consensus 465 ~~I~TtN~~~~i~~~L~~--R~-~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 465 IFIATANSIDTIPRPLLD--RM-EVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEEEecCCchhCCHHHhC--Ce-eEEecCCCCHHHHHHHHHHHH
Confidence 899999999999999998 88 478999999999999998764
No 108
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.54 E-value=7.4e-14 Score=166.99 Aligned_cols=204 Identities=22% Similarity=0.342 Sum_probs=141.1
Q ss_pred ccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchh--------
Q 003503 488 EDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------- 559 (815)
Q Consensus 488 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~-------- 559 (815)
.++.|++++|+.+.+++..... .+......++|+||||||||++++.+|+.++.+|+.++.....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~-------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSR-------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHh-------cccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 4578999999999876653211 1112233599999999999999999999999999888755432
Q ss_pred -hhccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccC-------------CCC
Q 003503 560 -TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGM-------------NAK 625 (815)
Q Consensus 560 -~~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~-------------~~~ 625 (815)
..|+|.....+...+..+....| |+||||||.+...... ...+.||..||.- ...
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g----------~~~~aLlevld~~~~~~~~d~~~~~~~dl 463 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRG----------DPASALLEVLDPEQNVAFSDHYLEVDYDL 463 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCC----------CHHHHHHHHhccccEEEEecccccccccC
Confidence 24778777777777777665555 8999999998653211 1234566655531 134
Q ss_pred CcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhcc-----CCCC---Cccc---HHHHHH-HcCCC
Q 003503 626 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRK-----SPIS---PDVD---LSALAR-YTHGF 693 (815)
Q Consensus 626 ~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~-----~~~~---~~~~---~~~la~-~t~g~ 693 (815)
+++++|||+|.. .|+++|+. ||. +|.++.++.++..+|.+.++.. ..+. -.++ +..+++ ++..+
T Consensus 464 s~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~ 539 (784)
T PRK10787 464 SDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREA 539 (784)
T ss_pred CceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCccc
Confidence 789999999987 49999998 995 8999999999999999988841 1111 1122 333443 23334
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 003503 694 SGADITEVCQRACKYAIREN 713 (815)
Q Consensus 694 sg~di~~l~~~a~~~a~~~~ 713 (815)
-.+.|+.+++..+..++.+.
T Consensus 540 GaR~LeR~I~~i~r~~l~~~ 559 (784)
T PRK10787 540 GVRSLEREISKLCRKAVKQL 559 (784)
T ss_pred CCcHHHHHHHHHHHHHHHHH
Confidence 44688877777666666554
No 109
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=7.5e-14 Score=158.65 Aligned_cols=187 Identities=22% Similarity=0.321 Sum_probs=137.0
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCC--------------
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-------------- 548 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~-------------- 548 (815)
...+|++|+|++.+++.|.+.+... +.+..+||+||+|+|||++|+.+|+.+..
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PC 78 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPC 78 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCC
Confidence 4567999999999999998876531 23456899999999999999999998764
Q ss_pred ---------------cEEEEeccchhhhccCccHHHHHHHHHHHh----hCCCeEEEEecchhhhhccCCCCCCCCchHH
Q 003503 549 ---------------NFISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSTGDAGGAAD 609 (815)
Q Consensus 549 ---------------~~i~v~~~~l~~~~~g~se~~i~~~F~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~ 609 (815)
.++.++... ...-..++++.+.+. .....|+||||+|.|. .
T Consensus 79 G~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls--------------~ 138 (700)
T PRK12323 79 GQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT--------------N 138 (700)
T ss_pred cccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC--------------H
Confidence 223333321 112344666665543 3346799999999983 2
Q ss_pred HHHHHHHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHH
Q 003503 610 RVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSALAR 688 (815)
Q Consensus 610 ~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-~~~~la~ 688 (815)
...|.||+.|+. ...++++|.+||.++.|.+.+++ |+ .++.|..++.++..+.++..+.+.++..+. .+..|++
T Consensus 139 ~AaNALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~ 213 (700)
T PRK12323 139 HAFNAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQ 213 (700)
T ss_pred HHHHHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 356889998884 44577888888889999999998 88 689999999999999999888766655332 2566777
Q ss_pred HcCCCCHHHHHHHHHHHHH
Q 003503 689 YTHGFSGADITEVCQRACK 707 (815)
Q Consensus 689 ~t~g~sg~di~~l~~~a~~ 707 (815)
...| +.++..+++..+..
T Consensus 214 ~A~G-s~RdALsLLdQaia 231 (700)
T PRK12323 214 AAQG-SMRDALSLTDQAIA 231 (700)
T ss_pred HcCC-CHHHHHHHHHHHHH
Confidence 6664 77787777766554
No 110
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.54 E-value=3e-14 Score=172.88 Aligned_cols=166 Identities=20% Similarity=0.349 Sum_probs=124.1
Q ss_pred cccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHh----------CCcEEEEe
Q 003503 485 VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVK 554 (815)
Q Consensus 485 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~----------~~~~i~v~ 554 (815)
-.++.+.|.+...+.+.+.+ ......+++|+||||||||++++++|..+ +.+++.++
T Consensus 175 ~~l~~vigr~~ei~~~i~iL-------------~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVL-------------QRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHH-------------hcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 34566777776433333322 22334579999999999999999999987 56788888
Q ss_pred ccchh--hhccCccHHHHHHHHHHHhh-CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEE
Q 003503 555 GPELL--TMWFGESEANVREIFDKARQ-SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFII 631 (815)
Q Consensus 555 ~~~l~--~~~~g~se~~i~~~F~~a~~-~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi 631 (815)
...+. .+|.|+.++.++.+|+.... ..++||||||++.+.+.++.. +. ...-+.|...+ ..+.+.+|
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~-~~-----~d~~~~lkp~l----~~g~l~~I 311 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD-GA-----MDAGNMLKPAL----ARGELHCV 311 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc-cc-----hhHHHHhcchh----hcCCCeEE
Confidence 88776 56899999999999998644 568999999999998765322 11 11223333332 36789999
Q ss_pred EecCCCCC-----CCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCC
Q 003503 632 GATNRPDI-----IDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSP 676 (815)
Q Consensus 632 ~aTn~~~~-----ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~ 676 (815)
|||+..+. +|+|+.| ||+ .|+++.|+.+++..|++.....+.
T Consensus 312 gaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e 358 (857)
T PRK10865 312 GATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYE 358 (857)
T ss_pred EcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhc
Confidence 99998874 8999999 997 688999999999999988776543
No 111
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.54 E-value=3.2e-14 Score=172.03 Aligned_cols=185 Identities=22% Similarity=0.335 Sum_probs=131.5
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhC----------CcEEEE
Q 003503 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ----------ANFISV 553 (815)
Q Consensus 484 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~----------~~~i~v 553 (815)
.-.++++.|.++....+.+.+ ......+++|+||||||||++++.+|..+. ..++.+
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l-------------~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDIL-------------LRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHH-------------hcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 345677778776544333322 223345799999999999999999998862 446777
Q ss_pred eccchh--hhccCccHHHHHHHHHHHhh-CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEE
Q 003503 554 KGPELL--TMWFGESEANVREIFDKARQ-SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFI 630 (815)
Q Consensus 554 ~~~~l~--~~~~g~se~~i~~~F~~a~~-~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~v 630 (815)
+...+. .+|.|+.++.++.+|+.++. ..++|||||||+.+.+.++.... .. +-+.|+..| ..+.+.+
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~--~d----~~n~Lkp~l----~~G~l~~ 319 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQ--GD----AANLLKPAL----ARGELRT 319 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccc--cc----HHHHhhHHh----hCCCeEE
Confidence 777765 36899999999999999865 45789999999999876543211 11 123333333 3567999
Q ss_pred EEecCCCC-----CCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCC-----CcccHHHHHHHcCCCC
Q 003503 631 IGATNRPD-----IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-----PDVDLSALARYTHGFS 694 (815)
Q Consensus 631 i~aTn~~~-----~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-----~~~~~~~la~~t~g~s 694 (815)
||||+..+ .+|+||.| ||. .|+++.|+.+++.+||+...+.+... .+..+..++..+.+|-
T Consensus 320 IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred EEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 99998754 38999999 995 89999999999999987666543221 2334666667666554
No 112
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.52 E-value=4.5e-13 Score=146.70 Aligned_cols=193 Identities=22% Similarity=0.368 Sum_probs=135.3
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM 286 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~ 286 (815)
.++.+.+|+++.|.++.++.+..++..... .-.++.+++|+||||||||++|+++|++++..+..++++.+.
T Consensus 17 ~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~ 88 (328)
T PRK00080 17 RSLRPKSLDEFIGQEKVKENLKIFIEAAKK--------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE 88 (328)
T ss_pred hhcCcCCHHHhcCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc
Confidence 356777999999999999999887753111 113467899999999999999999999999887777665332
Q ss_pred hhhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhccc----------------CCC
Q 003503 287 SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK----------------SRA 350 (815)
Q Consensus 287 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~----------------~~~ 350 (815)
. ...+..++... ..++++||||++.+... . .+.|...|+... .-.
T Consensus 89 ~------~~~l~~~l~~l--~~~~vl~IDEi~~l~~~-------~----~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~ 149 (328)
T PRK00080 89 K------PGDLAAILTNL--EEGDVLFIDEIHRLSPV-------V----EEILYPAMEDFRLDIMIGKGPAARSIRLDLP 149 (328)
T ss_pred C------hHHHHHHHHhc--ccCCEEEEecHhhcchH-------H----HHHHHHHHHhcceeeeeccCccccceeecCC
Confidence 1 12233344332 34679999999988532 1 122333333221 113
Q ss_pred cEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhhHHHhhcCCCcHHHHHHHHHHH
Q 003503 351 HVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYVGSDLAALCTEA 429 (815)
Q Consensus 351 ~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a 429 (815)
.+.+|++|+++..+++++++ ||...+.++.|+.+++.++++.......+. ++..+..++..+.|+. +.+..++...
T Consensus 150 ~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~ 226 (328)
T PRK00080 150 PFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRV 226 (328)
T ss_pred CceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHH
Confidence 47888999999999999987 888889999999999999999776654432 2334778888888865 3444444443
No 113
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.52 E-value=2.4e-13 Score=137.70 Aligned_cols=182 Identities=24% Similarity=0.385 Sum_probs=137.4
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 003503 208 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS 287 (815)
Q Consensus 208 ~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 287 (815)
.+++-.|++..|+++.++++.-++.....+ -....|+||+||||.||||||+.+|++++..+...+|+.+..
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r--------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK 90 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKKR--------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK 90 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHHhc--------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC
Confidence 456778999999999999998777643222 245678999999999999999999999999988888776532
Q ss_pred hhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccC----------------CCc
Q 003503 288 KLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKS----------------RAH 351 (815)
Q Consensus 288 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~----------------~~~ 351 (815)
...+-.++.... ..+|+||||||.+.+. +.+.|...|+.+.- -++
T Consensus 91 ------~gDlaaiLt~Le--~~DVLFIDEIHrl~~~-----------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 91 ------PGDLAAILTNLE--EGDVLFIDEIHRLSPA-----------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred ------hhhHHHHHhcCC--cCCeEEEehhhhcChh-----------HHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 233444444433 3469999999998654 34556666665431 257
Q ss_pred EEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcccc-chhhhHHHhhcCCCc
Q 003503 352 VIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAE-DVDLERVAKDTHGYV 418 (815)
Q Consensus 352 vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~-~~~l~~la~~t~g~~ 418 (815)
+.+||+|.+...+...|+. ||.....+..++.++..+|++...+.+.+.- +....++|.++.|..
T Consensus 152 FTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTP 217 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTP 217 (332)
T ss_pred eeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCc
Confidence 8899999999999999997 8998899999999999999987766555432 234567788877754
No 114
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=2.1e-13 Score=154.33 Aligned_cols=184 Identities=20% Similarity=0.305 Sum_probs=129.0
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCC--------------
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-------------- 548 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~-------------- 548 (815)
.+.+|+++.|++++++.|...+... ..+.++||+|||||||||+|+++|..+..
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~ 76 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRA 76 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHH
Confidence 4567899999999988887765431 23456999999999999999999998754
Q ss_pred ----------cEEEEeccchhhhccCccHHHHHHHHHHHhhC----CCeEEEEecchhhhhccCCCCCCCCchHHHHHHH
Q 003503 549 ----------NFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQ 614 (815)
Q Consensus 549 ----------~~i~v~~~~l~~~~~g~se~~i~~~F~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~ 614 (815)
.++.++++. ...-..++.+.+.+... ...|+|+||+|.+. ...++.
T Consensus 77 c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt--------------~~a~~~ 136 (472)
T PRK14962 77 CRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT--------------KEAFNA 136 (472)
T ss_pred HHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH--------------HHHHHH
Confidence 344454431 11234566666655432 34699999999983 234577
Q ss_pred HHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHcCCC
Q 003503 615 LLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGF 693 (815)
Q Consensus 615 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~t~g~ 693 (815)
||..|+.. .+.+++|++|+.|+.+.+++.+ |+. ++.|.+++.++...+++..++..++.- +..+..|++.+.|
T Consensus 137 LLk~LE~p--~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G- 210 (472)
T PRK14962 137 LLKTLEEP--PSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG- 210 (472)
T ss_pred HHHHHHhC--CCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-
Confidence 88888753 3456777777778899999998 884 899999999999999998887655432 2336777776543
Q ss_pred CHHHHHHHHHH
Q 003503 694 SGADITEVCQR 704 (815)
Q Consensus 694 sg~di~~l~~~ 704 (815)
+.+++.+.+..
T Consensus 211 dlR~aln~Le~ 221 (472)
T PRK14962 211 GLRDALTMLEQ 221 (472)
T ss_pred CHHHHHHHHHH
Confidence 44454444444
No 115
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.52 E-value=1.2e-13 Score=157.58 Aligned_cols=173 Identities=21% Similarity=0.333 Sum_probs=120.8
Q ss_pred cceEEeCCCCCChhHHHHHHHHHh-----CCcEEEEeccchhhhccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhcc
Q 003503 523 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 597 (815)
Q Consensus 523 ~gilL~GppGtGKT~lakala~~~-----~~~~i~v~~~~l~~~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r 597 (815)
.+++||||+|||||+|++++++++ +..++.+++.++...+..........-|..... .+.+|+|||++.+..++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCH
Confidence 469999999999999999999987 455888898888766544332222223333222 46799999999985431
Q ss_pred CCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCC---CCccccCCCCCc--ceeeccCCCHHHHHHHHHHHh
Q 003503 598 GSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEASRLQIFKACL 672 (815)
Q Consensus 598 ~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~---ld~allr~gRf~--~~i~~~~p~~~~r~~Il~~~l 672 (815)
.....|+..++.+...++.+||+++..|.. +++.+.+ ||. .++.+.+||.++|.+|++..+
T Consensus 228 ------------~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~ 293 (450)
T PRK00149 228 ------------RTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKA 293 (450)
T ss_pred ------------HHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHH
Confidence 122345555554444445577777776655 6788886 886 589999999999999999999
Q ss_pred ccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 003503 673 RKSPIS-PDVDLSALARYTHGFSGADITEVCQRACKYAIR 711 (815)
Q Consensus 673 ~~~~~~-~~~~~~~la~~t~g~sg~di~~l~~~a~~~a~~ 711 (815)
...++. ++.-++.||+... -+.++|..++......|..
T Consensus 294 ~~~~~~l~~e~l~~ia~~~~-~~~R~l~~~l~~l~~~~~~ 332 (450)
T PRK00149 294 EEEGIDLPDEVLEFIAKNIT-SNVRELEGALNRLIAYASL 332 (450)
T ss_pred HHcCCCCCHHHHHHHHcCcC-CCHHHHHHHHHHHHHHHHh
Confidence 765443 2223677777665 4788888888887766543
No 116
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.52 E-value=1.6e-13 Score=154.57 Aligned_cols=173 Identities=21% Similarity=0.347 Sum_probs=119.8
Q ss_pred CcceEEeCCCCCChhHHHHHHHHHh-----CCcEEEEeccchhhhccCccHH-HHHHHHHHHhhCCCeEEEEecchhhhh
Q 003503 522 SKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEA-NVREIFDKARQSAPCVLFFDELDSIAT 595 (815)
Q Consensus 522 ~~gilL~GppGtGKT~lakala~~~-----~~~~i~v~~~~l~~~~~g~se~-~i~~~F~~a~~~~p~ilfiDEid~l~~ 595 (815)
..+++||||+|+|||+|++++++++ +..++.+++.++...+...... .+....+..+ .+.+|+|||++.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAG 213 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcC
Confidence 3468999999999999999999887 4668889988876654432211 1222222222 247999999999854
Q ss_pred ccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCC---CCccccCCCCCc--ceeeccCCCHHHHHHHHHH
Q 003503 596 QRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEASRLQIFKA 670 (815)
Q Consensus 596 ~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~---ld~allr~gRf~--~~i~~~~p~~~~r~~Il~~ 670 (815)
+. .....|+..++.....++.+||++++.|+. +++.+.+ ||. ..+.+++||.++|..|++.
T Consensus 214 ~~------------~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 214 KE------------RTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred CH------------HHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHH
Confidence 31 122334444444433445577777766765 5677776 886 5799999999999999999
Q ss_pred HhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 003503 671 CLRKSPIS-PDVDLSALARYTHGFSGADITEVCQRACKYAIR 711 (815)
Q Consensus 671 ~l~~~~~~-~~~~~~~la~~t~g~sg~di~~l~~~a~~~a~~ 711 (815)
.++..++. ++.-+..||++.. -+.+++..++......|..
T Consensus 280 ~~~~~~~~l~~e~l~~ia~~~~-~~~r~l~~~l~~l~~~a~~ 320 (405)
T TIGR00362 280 KAEEEGLELPDEVLEFIAKNIR-SNVRELEGALNRLLAYASL 320 (405)
T ss_pred HHHHcCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHH
Confidence 99776554 2334677887665 4788999988887776653
No 117
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.51 E-value=1.1e-13 Score=159.78 Aligned_cols=212 Identities=24% Similarity=0.310 Sum_probs=141.3
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHh----------CCcEEE
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFIS 552 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~----------~~~~i~ 552 (815)
...+|+++.|.+...+.++..+.. ..+.+++|+||||||||++|+++...+ +.+|+.
T Consensus 60 rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~ 126 (531)
T TIGR02902 60 RPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVE 126 (531)
T ss_pred CcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEE
Confidence 346788999999888777644211 123579999999999999999998753 357898
Q ss_pred Eeccch-------hhhccCccHH----------------HHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHH
Q 003503 553 VKGPEL-------LTMWFGESEA----------------NVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAAD 609 (815)
Q Consensus 553 v~~~~l-------~~~~~g~se~----------------~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~ 609 (815)
+++... ....+|.... .-...+.+| ...+||||||+.+..
T Consensus 127 id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a---~gG~L~IdEI~~L~~-------------- 189 (531)
T TIGR02902 127 IDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRA---HGGVLFIDEIGELHP-------------- 189 (531)
T ss_pred EccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhcc---CCcEEEEechhhCCH--------------
Confidence 887531 1111111000 000122222 236999999999843
Q ss_pred HHHHHHHhccccC---------------------------CCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHH
Q 003503 610 RVLNQLLTEMDGM---------------------------NAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEA 662 (815)
Q Consensus 610 ~vl~~lL~~ld~~---------------------------~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~ 662 (815)
...+.||..|+.- .+.+-.+|++|||.|+.|+|++++ |+. .++|++++.+
T Consensus 190 ~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~e 266 (531)
T TIGR02902 190 VQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDE 266 (531)
T ss_pred HHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHH
Confidence 2344455444321 011224556667889999999998 885 7889999999
Q ss_pred HHHHHHHHHhccCCCCC-cccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccccccccc
Q 003503 663 SRLQIFKACLRKSPISP-DVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIERERRKRENPEAMEEDEVDDVAE 741 (815)
Q Consensus 663 ~r~~Il~~~l~~~~~~~-~~~~~~la~~t~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (815)
++.+|++..+++..+.- +.-++.++.++ ++++++.++|+.|+..|..+. ...
T Consensus 267 ei~~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~~~-------------------------~~~ 319 (531)
T TIGR02902 267 EIKEIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALGEG-------------------------RKR 319 (531)
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhCC-------------------------CcE
Confidence 99999999998776442 22355566554 489999999999998776432 136
Q ss_pred ccHHHHHHHHhhc
Q 003503 742 IKAVHFEESMKYA 754 (815)
Q Consensus 742 i~~~~f~~a~~~~ 754 (815)
|+.+|++.++..-
T Consensus 320 It~~dI~~vl~~~ 332 (531)
T TIGR02902 320 ILAEDIEWVAENG 332 (531)
T ss_pred EcHHHHHHHhCCc
Confidence 9999999998643
No 118
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.51 E-value=1.2e-13 Score=152.46 Aligned_cols=223 Identities=19% Similarity=0.293 Sum_probs=145.1
Q ss_pred cccccchhhhhhhccccCCCCChhh----hhhhcCC-CCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchh-hhc
Q 003503 489 DIGGLDNVKRELQETVQYPVEHPEK----FEKFGMS-PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMW 562 (815)
Q Consensus 489 ~i~g~~~~k~~l~~~i~~~~~~~~~----~~~~~~~-~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~-~~~ 562 (815)
.|.|+++.++.+...+......-.. ....+.. ...++||+||||||||++|+++|..++.+|..+++..+. ..|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 4789999998886554210000000 0000111 134699999999999999999999999999999888765 368
Q ss_pred cCcc-HHHHHHHHHHH----hhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCC-----------CCC
Q 003503 563 FGES-EANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN-----------AKK 626 (815)
Q Consensus 563 ~g~s-e~~i~~~F~~a----~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----------~~~ 626 (815)
+|+. +..+..+++.+ ....++||||||||.+..++.+.+....-....+.+.||+.|+|.. +..
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 8886 44455555533 2345789999999999876533221111223468888999998642 123
Q ss_pred cEEEEEecCCCC--------------------------------------------------CCCccccCCCCCcceeec
Q 003503 627 TVFIIGATNRPD--------------------------------------------------IIDPALLRPGRLDQLIYI 656 (815)
Q Consensus 627 ~v~vi~aTn~~~--------------------------------------------------~ld~allr~gRf~~~i~~ 656 (815)
+.++|.|+|-.. -+.|+|+ ||+|.+++|
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~f 315 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIATL 315 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEeec
Confidence 568888888610 0235555 599999999
Q ss_pred cCCCHHHHHHHHHHH----hcc-------CCCCCccc---HHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH
Q 003503 657 PLPDEASRLQIFKAC----LRK-------SPISPDVD---LSALARY--THGFSGADITEVCQRACKYAIREN 713 (815)
Q Consensus 657 ~~p~~~~r~~Il~~~----l~~-------~~~~~~~~---~~~la~~--t~g~sg~di~~l~~~a~~~a~~~~ 713 (815)
.+.+.++..+|+... +++ .++.-.++ +..|++. ...+-.+-|+.++++..+.++.+.
T Consensus 316 ~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~ 388 (413)
T TIGR00382 316 EKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDL 388 (413)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhC
Confidence 999999999998753 221 12222222 4566664 345556788888888777666554
No 119
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.51 E-value=2.8e-13 Score=143.64 Aligned_cols=176 Identities=28% Similarity=0.476 Sum_probs=123.7
Q ss_pred cccCCCCcccccChHHHH---HHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEech
Q 003503 207 ERLNEVGYDDVGGVRKQM---AQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGP 283 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~---~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~ 283 (815)
..+++-+++++.|++..+ .-|+++++. ..-.+++|||||||||||||+.||+..+..|..+++.
T Consensus 16 ~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv 82 (436)
T COG2256 16 ERLRPKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV 82 (436)
T ss_pred HHhCCCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc
Confidence 456788999999999887 446777764 2345799999999999999999999999999999863
Q ss_pred hhhhhhhchhHHHHHHHHHHHHhc----CCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEec-
Q 003503 284 EIMSKLAGESESNLRKAFEEAEKN----APSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGAT- 358 (815)
Q Consensus 284 ~l~~~~~g~~~~~l~~vf~~a~~~----~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~at- 358 (815)
. ..-+.++.++++++.. ...|||+|||+.+-..++ ..|+..++ ++.+++||+|
T Consensus 83 ~-------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQ-----------D~lLp~vE----~G~iilIGATT 140 (436)
T COG2256 83 T-------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQ-----------DALLPHVE----NGTIILIGATT 140 (436)
T ss_pred c-------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhh-----------hhhhhhhc----CCeEEEEeccC
Confidence 2 2346788899888543 357999999999864432 34555553 4567777655
Q ss_pred CCC-CCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHh--cCCccc------cchhhhHHHhhcCCCcHH
Q 003503 359 NRP-NSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHT--KNMKLA------EDVDLERVAKDTHGYVGS 420 (815)
Q Consensus 359 n~~-~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~--~~~~l~------~~~~l~~la~~t~g~~~~ 420 (815)
..| -.+.++|++ |. +.+++.+.+.++-..+++..+ ....+. ++.-+..++..+.|-..+
T Consensus 141 ENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 141 ENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred CCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 344 478999998 43 457888888888888877522 122222 233455666666664433
No 120
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.50 E-value=1.3e-13 Score=152.58 Aligned_cols=191 Identities=20% Similarity=0.328 Sum_probs=128.7
Q ss_pred ccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcE---------------
Q 003503 486 SWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF--------------- 550 (815)
Q Consensus 486 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~--------------- 550 (815)
.|++|+|++.+++.|++.+..+..+. ...+...+.++||+||+|+|||++|+++|..+....
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~---~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADV---AAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccc---cccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 48999999999999999987654322 223444567799999999999999999998753320
Q ss_pred EEEeccchhh--hc-cCccHHHHHHHHHHHhhC----CCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCC
Q 003503 551 ISVKGPELLT--MW-FGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN 623 (815)
Q Consensus 551 i~v~~~~l~~--~~-~g~se~~i~~~F~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~ 623 (815)
..-+.+++.- .. ..-.-..|+.+++.+... ...|+||||+|.+.. ...|.||..|+...
T Consensus 80 ~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~--------------~aanaLLk~LEep~ 145 (394)
T PRK07940 80 LAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE--------------RAANALLKAVEEPP 145 (394)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH--------------HHHHHHHHHhhcCC
Confidence 0001111100 00 001234578888877543 346999999999832 23477888887532
Q ss_pred CCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHH
Q 003503 624 AKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVC 702 (815)
Q Consensus 624 ~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~l~ 702 (815)
.+.++|++|+| ++.+.|.+++ |+ ..++|++|+.++..+++... .+++ ......++..+.|..+..+.-+.
T Consensus 146 -~~~~fIL~a~~-~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~---~~~~-~~~a~~la~~s~G~~~~A~~l~~ 215 (394)
T PRK07940 146 -PRTVWLLCAPS-PEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRR---DGVD-PETARRAARASQGHIGRARRLAT 215 (394)
T ss_pred -CCCeEEEEECC-hHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHh---cCCC-HHHHHHHHHHcCCCHHHHHHHhc
Confidence 33455555555 8999999998 87 59999999999888777632 2333 33466788888888776655443
No 121
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.50 E-value=7.7e-13 Score=143.62 Aligned_cols=188 Identities=23% Similarity=0.349 Sum_probs=129.2
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhhhch
Q 003503 213 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGE 292 (815)
Q Consensus 213 ~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~ 292 (815)
+|+++.|.++.++.|+.++...... -..+.+++|+||||||||+||+++|.+++..+..+++.....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 5789999999999998887642211 133567999999999999999999999988776665543221
Q ss_pred hHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhccc----------------CCCcEEEEE
Q 003503 293 SESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK----------------SRAHVIVMG 356 (815)
Q Consensus 293 ~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~----------------~~~~vivi~ 356 (815)
...+...+... ..+.++||||++.+.+.. .+.|...|+... ....+++++
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l~~~~-----------~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRLSPAV-----------EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhhCHHH-----------HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 11122222222 346799999999886421 122344443221 123478889
Q ss_pred ecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhhHHHhhcCCCcHHHHHHHHHHHH
Q 003503 357 ATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYVGSDLAALCTEAA 430 (815)
Q Consensus 357 atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~ 430 (815)
+|+++..+++++++ ||...+.+..++.++..++++.......+. ++..+..++..+.|+. +.+..++..+.
T Consensus 135 ~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~ 206 (305)
T TIGR00635 135 ATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVR 206 (305)
T ss_pred ecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHH
Confidence 99999999999987 888888999999999999998776543332 2345678888888876 33455555443
No 122
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=2.3e-13 Score=151.53 Aligned_cols=186 Identities=19% Similarity=0.259 Sum_probs=131.4
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCc-------------
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------------- 549 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~------------- 549 (815)
...+|+++.|++.+...|...+... ..+..+||+||+|||||++|+++|..++..
T Consensus 13 RP~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s 80 (484)
T PRK14956 13 RPQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS 80 (484)
T ss_pred CCCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH
Confidence 3567899999999998887765431 233458999999999999999999987642
Q ss_pred -----------EEEEeccchhhhccCccHHHHHHHHHHHh----hCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHH
Q 003503 550 -----------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQ 614 (815)
Q Consensus 550 -----------~i~v~~~~l~~~~~g~se~~i~~~F~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~ 614 (815)
++.+++.. ......++++.+.+. .....|+||||+|.+. ....+.
T Consensus 81 C~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls--------------~~A~NA 140 (484)
T PRK14956 81 CLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT--------------DQSFNA 140 (484)
T ss_pred HHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC--------------HHHHHH
Confidence 33333211 112334555554443 3446799999999983 235788
Q ss_pred HHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcCCC
Q 003503 615 LLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGF 693 (815)
Q Consensus 615 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~t~g~ 693 (815)
||..|+. ....+++|.+|+.++.|.+.+++ |+. +++|.+++.++..+.++..+.+.++. .+..+..|++...|
T Consensus 141 LLKtLEE--Pp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G- 214 (484)
T PRK14956 141 LLKTLEE--PPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG- 214 (484)
T ss_pred HHHHhhc--CCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 8888874 34678888899989999999998 884 78999999988888898888776654 23345666665554
Q ss_pred CHHHHHHHHHHHH
Q 003503 694 SGADITEVCQRAC 706 (815)
Q Consensus 694 sg~di~~l~~~a~ 706 (815)
+.++.-+++..+.
T Consensus 215 d~RdAL~lLeq~i 227 (484)
T PRK14956 215 SVRDMLSFMEQAI 227 (484)
T ss_pred hHHHHHHHHHHHH
Confidence 5556555554443
No 123
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.49 E-value=5.7e-13 Score=148.45 Aligned_cols=202 Identities=24% Similarity=0.307 Sum_probs=126.3
Q ss_pred ccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhC---------CcEEEEeccch
Q 003503 488 EDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---------ANFISVKGPEL 558 (815)
Q Consensus 488 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~---------~~~i~v~~~~l 558 (815)
+++.|-++..+.|...+.... . + ..+.+++|+||||||||+++++++..+. ..++.+++...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~------~--~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPIL------R--G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHH------c--C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 356666666666655443111 0 1 2335699999999999999999998753 46778887543
Q ss_pred hhh----------cc--Cc-------c-HHHHHHHHHHHh-hCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHh
Q 003503 559 LTM----------WF--GE-------S-EANVREIFDKAR-QSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLT 617 (815)
Q Consensus 559 ~~~----------~~--g~-------s-e~~i~~~F~~a~-~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~ 617 (815)
.+. .. |. + .+....+++... ...+.||+|||+|.+... ...++.+|+.
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~-----------~~~~L~~l~~ 154 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD-----------DDDLLYQLSR 154 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC-----------CcHHHHhHhc
Confidence 221 11 11 1 223445555543 345679999999999621 1235666665
Q ss_pred ccccC-CCCCcEEEEEecCCCC---CCCccccCCCCCc-ceeeccCCCHHHHHHHHHHHhccC---CCCCcccHHHHHHH
Q 003503 618 EMDGM-NAKKTVFIIGATNRPD---IIDPALLRPGRLD-QLIYIPLPDEASRLQIFKACLRKS---PISPDVDLSALARY 689 (815)
Q Consensus 618 ~ld~~-~~~~~v~vi~aTn~~~---~ld~allr~gRf~-~~i~~~~p~~~~r~~Il~~~l~~~---~~~~~~~~~~la~~ 689 (815)
..+.. ....++.+|+++|.++ .+++.+.+ ||. ..++|++++.++..+|++..++.. ..-.+.-+..+++.
T Consensus 155 ~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~ 232 (365)
T TIGR02928 155 ARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAAL 232 (365)
T ss_pred cccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHH
Confidence 52221 1235789999999886 47788876 775 679999999999999999988631 11112223344443
Q ss_pred c---CCCCHHHHHHHHHHHHHHHHHH
Q 003503 690 T---HGFSGADITEVCQRACKYAIRE 712 (815)
Q Consensus 690 t---~g~sg~di~~l~~~a~~~a~~~ 712 (815)
. .| ..+.+.++|+.|+..|..+
T Consensus 233 ~~~~~G-d~R~al~~l~~a~~~a~~~ 257 (365)
T TIGR02928 233 AAQEHG-DARKAIDLLRVAGEIAERE 257 (365)
T ss_pred HHHhcC-CHHHHHHHHHHHHHHHHHc
Confidence 3 33 3455566888888777654
No 124
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.49 E-value=1.4e-13 Score=167.88 Aligned_cols=184 Identities=21% Similarity=0.362 Sum_probs=131.7
Q ss_pred cccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHh----------CCcEEEEe
Q 003503 485 VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVK 554 (815)
Q Consensus 485 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~----------~~~~i~v~ 554 (815)
-.++.+.|.++..+.+.+.+ ......+++|+||||||||++++++|..+ +.+++.++
T Consensus 170 ~~~~~~igr~~ei~~~~~~l-------------~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~ 236 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVL-------------SRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD 236 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHH-------------hcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEee
Confidence 35566777766444333322 22344578999999999999999999886 45678888
Q ss_pred ccchh--hhccCccHHHHHHHHHHHhhC-CCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEE
Q 003503 555 GPELL--TMWFGESEANVREIFDKARQS-APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFII 631 (815)
Q Consensus 555 ~~~l~--~~~~g~se~~i~~~F~~a~~~-~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi 631 (815)
...+. .+|.|+.++.+..+|+.+... .++|||||||+.+.+.++.. +. ..+.+.|...+ ..+.+.+|
T Consensus 237 ~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~-----~~-~d~~~~Lk~~l----~~g~i~~I 306 (852)
T TIGR03346 237 MGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE-----GA-MDAGNMLKPAL----ARGELHCI 306 (852)
T ss_pred HHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc-----ch-hHHHHHhchhh----hcCceEEE
Confidence 77775 578999999999999998654 58999999999998654321 11 12333333322 46679999
Q ss_pred EecCCCC-----CCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCc-----ccHHHHHHHcCCCC
Q 003503 632 GATNRPD-----IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-----VDLSALARYTHGFS 694 (815)
Q Consensus 632 ~aTn~~~-----~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-----~~~~~la~~t~g~s 694 (815)
|+|+..+ .+|+++.| ||. .|+++.|+.+++..|++....++..... ..+...+..+.+|-
T Consensus 307 gaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi 376 (852)
T TIGR03346 307 GATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYI 376 (852)
T ss_pred EeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccc
Confidence 9999874 47999999 996 5899999999999999988766554333 23455555555444
No 125
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.48 E-value=1.2e-13 Score=168.11 Aligned_cols=186 Identities=24% Similarity=0.363 Sum_probs=135.8
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhC----------CcEEEE
Q 003503 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ----------ANFISV 553 (815)
Q Consensus 484 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~----------~~~i~v 553 (815)
.-.|+.+.|-++..+.+.+.+. ....++++|+||||||||++|+.+|..+. ..++.+
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L~-------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l 241 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQILG-------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL 241 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHHc-------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 3456777777766666655433 23456799999999999999999999863 678999
Q ss_pred eccchh--hhccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEE
Q 003503 554 KGPELL--TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFII 631 (815)
Q Consensus 554 ~~~~l~--~~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi 631 (815)
+...++ .+|.|+.++.++.+|+.+....++|||||||+.+.+.++.. +. .. +.+.|...+ ..+.+.+|
T Consensus 242 ~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~-g~--~~---~a~lLkp~l----~rg~l~~I 311 (821)
T CHL00095 242 DIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE-GA--ID---AANILKPAL----ARGELQCI 311 (821)
T ss_pred eHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC-Cc--cc---HHHHhHHHH----hCCCcEEE
Confidence 988887 57899999999999999988888999999999998765322 11 11 222222222 25678999
Q ss_pred EecCCCC-----CCCccccCCCCCcceeeccCCCHHHHHHHHHHHhcc----CCCC-CcccHHHHHHHcCCCCH
Q 003503 632 GATNRPD-----IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRK----SPIS-PDVDLSALARYTHGFSG 695 (815)
Q Consensus 632 ~aTn~~~-----~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~----~~~~-~~~~~~~la~~t~g~sg 695 (815)
|+|+..+ ..|+++.| ||. .|.++.|+.++...|++..... ..+. ++.-+..++..+.+|-+
T Consensus 312 gaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 312 GATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred EeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 9999765 47899999 996 5799999999999998765432 1221 23336666777666654
No 126
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=9.1e-13 Score=150.30 Aligned_cols=187 Identities=21% Similarity=0.302 Sum_probs=134.8
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCC--------------
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-------------- 548 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~-------------- 548 (815)
...+|++|.|++.+++.|...+.. + +.+..+||+||+|+|||++|+++|+.+..
T Consensus 10 RPktFddVIGQe~vv~~L~~aI~~-----------g-rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~s 77 (702)
T PRK14960 10 RPRNFNELVGQNHVSRALSSALER-----------G-RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCAT 77 (702)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHH
Confidence 346799999999999999877652 1 33457899999999999999999998754
Q ss_pred ----------cEEEEeccchhhhccCccHHHHHHHHHHHhh----CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHH
Q 003503 549 ----------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQ 614 (815)
Q Consensus 549 ----------~~i~v~~~~l~~~~~g~se~~i~~~F~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~ 614 (815)
.++.+++++- ..-..+|++...+.. ....|+||||+|.|-. ...+.
T Consensus 78 C~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~--------------~A~NA 137 (702)
T PRK14960 78 CKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST--------------HSFNA 137 (702)
T ss_pred HHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH--------------HHHHH
Confidence 2344444321 123456666655432 3457999999999832 24677
Q ss_pred HHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHcCCC
Q 003503 615 LLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGF 693 (815)
Q Consensus 615 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~t~g~ 693 (815)
||..|+.. ...+.+|.+|+.+..+.+.+++ |+ .++.|.+++.++..+.++..+++.++.-+ ..+..|++.+.|
T Consensus 138 LLKtLEEP--P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G- 211 (702)
T PRK14960 138 LLKTLEEP--PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG- 211 (702)
T ss_pred HHHHHhcC--CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 88888753 3456677777778888888886 88 58999999999999999988887665433 336677776654
Q ss_pred CHHHHHHHHHHHHH
Q 003503 694 SGADITEVCQRACK 707 (815)
Q Consensus 694 sg~di~~l~~~a~~ 707 (815)
+.+++.+++..+..
T Consensus 212 dLRdALnLLDQaIa 225 (702)
T PRK14960 212 SLRDALSLTDQAIA 225 (702)
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777766554
No 127
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1.5e-12 Score=144.11 Aligned_cols=187 Identities=22% Similarity=0.308 Sum_probs=131.9
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCc-------------
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------------- 549 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~------------- 549 (815)
.+.+|++|.|++.+++.|+..+.. + ..+..++|+||+|+|||++|+++|..+...
T Consensus 11 rP~~~~~iiGq~~~~~~l~~~~~~-----------~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~ 78 (363)
T PRK14961 11 RPQYFRDIIGQKHIVTAISNGLSL-----------G-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCII 78 (363)
T ss_pred CCCchhhccChHHHHHHHHHHHHc-----------C-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 356799999999999988776542 1 234568999999999999999999987531
Q ss_pred -----------EEEEeccchhhhccCccHHHHHHHHHHHhhC----CCeEEEEecchhhhhccCCCCCCCCchHHHHHHH
Q 003503 550 -----------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQ 614 (815)
Q Consensus 550 -----------~i~v~~~~l~~~~~g~se~~i~~~F~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~ 614 (815)
++.+++.. ...-..++.+.+.+... ...|+||||+|.+. ....+.
T Consensus 79 c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~--------------~~a~na 138 (363)
T PRK14961 79 CKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS--------------RHSFNA 138 (363)
T ss_pred HHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC--------------HHHHHH
Confidence 22222211 01234566666655432 34699999999873 234567
Q ss_pred HHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcCCC
Q 003503 615 LLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGF 693 (815)
Q Consensus 615 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~t~g~ 693 (815)
||..|+.. ...+.+|.+|+.++.+.+.+.+ |+ ..+.|++|+.++..++++..+++.++. ++..+..+++.+.|
T Consensus 139 LLk~lEe~--~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G- 212 (363)
T PRK14961 139 LLKTLEEP--PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG- 212 (363)
T ss_pred HHHHHhcC--CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 88887753 3456666677778888888886 87 588999999999999999988776643 23346667777664
Q ss_pred CHHHHHHHHHHHHH
Q 003503 694 SGADITEVCQRACK 707 (815)
Q Consensus 694 sg~di~~l~~~a~~ 707 (815)
+.+++.+++..++.
T Consensus 213 ~~R~al~~l~~~~~ 226 (363)
T PRK14961 213 SMRDALNLLEHAIN 226 (363)
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777766653
No 128
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1.2e-12 Score=153.63 Aligned_cols=186 Identities=21% Similarity=0.289 Sum_probs=132.0
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCc-------------
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------------- 549 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~------------- 549 (815)
...+|++|.|++.+++.|+..+... +.+..+||+||||||||++|+++|+.+...
T Consensus 11 RP~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~s 78 (944)
T PRK14949 11 RPATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSS 78 (944)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchH
Confidence 4568999999999999888765431 234457999999999999999999998653
Q ss_pred -----------EEEEeccchhhhccCccHHHHHHHHHHHh----hCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHH
Q 003503 550 -----------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQ 614 (815)
Q Consensus 550 -----------~i~v~~~~l~~~~~g~se~~i~~~F~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~ 614 (815)
++.+++.+ ...-..+|++.+.+. .....|+||||+|.|- ...++.
T Consensus 79 C~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT--------------~eAqNA 138 (944)
T PRK14949 79 CVEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS--------------RSSFNA 138 (944)
T ss_pred HHHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC--------------HHHHHH
Confidence 11122211 011234555554443 3345799999999983 346788
Q ss_pred HHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHcCCC
Q 003503 615 LLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGF 693 (815)
Q Consensus 615 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~t~g~ 693 (815)
||..|+.. ...+.+|++|+.+..|-+.+++ |+ .++.|.+++.++....++..+...++.-+ ..+..|++.+.|
T Consensus 139 LLKtLEEP--P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G- 212 (944)
T PRK14949 139 LLKTLEEP--PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG- 212 (944)
T ss_pred HHHHHhcc--CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 99998853 4456677778888888888887 87 68999999999999999888876554422 236667776654
Q ss_pred CHHHHHHHHHHHH
Q 003503 694 SGADITEVCQRAC 706 (815)
Q Consensus 694 sg~di~~l~~~a~ 706 (815)
+.+++.++|..+.
T Consensus 213 d~R~ALnLLdQal 225 (944)
T PRK14949 213 SMRDALSLTDQAI 225 (944)
T ss_pred CHHHHHHHHHHHH
Confidence 7778888887665
No 129
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.47 E-value=7.5e-13 Score=149.20 Aligned_cols=170 Identities=14% Similarity=0.229 Sum_probs=112.0
Q ss_pred CcceEEeCCCCCChhHHHHHHHHHh---CCcEEEEeccchhhhccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccC
Q 003503 522 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRG 598 (815)
Q Consensus 522 ~~gilL~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~ 598 (815)
.++++||||+|+|||+|++++++.+ +..++.++..++...+.......-...|..... .+.+|+|||++.+.++.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~-~~dvLiIDDiq~l~~k~- 218 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYR-NVDALFIEDIEVFSGKG- 218 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcc-cCCEEEEcchhhhcCCh-
Confidence 3569999999999999999999876 567888888777654432221111233554433 45799999999985321
Q ss_pred CCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCC---CCCccccCCCCCc--ceeeccCCCHHHHHHHHHHHhc
Q 003503 599 SSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPD---IIDPALLRPGRLD--QLIYIPLPDEASRLQIFKACLR 673 (815)
Q Consensus 599 ~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~---~ld~allr~gRf~--~~i~~~~p~~~~r~~Il~~~l~ 673 (815)
... ..|+..++.+...++.+|+++++.|. .+++.+.+ ||. ..+.+++|+.++|.+|++..+.
T Consensus 219 --------~~q---eelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~ 285 (445)
T PRK12422 219 --------ATQ---EEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAE 285 (445)
T ss_pred --------hhH---HHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHH
Confidence 112 23333333322234456666665564 46788887 885 7889999999999999999998
Q ss_pred cCCCCCccc-HHHHHHHcCCCCHHHHHHHHHHHHH
Q 003503 674 KSPISPDVD-LSALARYTHGFSGADITEVCQRACK 707 (815)
Q Consensus 674 ~~~~~~~~~-~~~la~~t~g~sg~di~~l~~~a~~ 707 (815)
..++.-+.+ ++.|+.... -+.++|.+.+...+.
T Consensus 286 ~~~~~l~~evl~~la~~~~-~dir~L~g~l~~l~~ 319 (445)
T PRK12422 286 ALSIRIEETALDFLIEALS-SNVKSLLHALTLLAK 319 (445)
T ss_pred HcCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHH
Confidence 766543333 455666544 356777777666643
No 130
>PRK04195 replication factor C large subunit; Provisional
Probab=99.46 E-value=5.5e-13 Score=153.30 Aligned_cols=192 Identities=24% Similarity=0.312 Sum_probs=133.2
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchhhhc
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 562 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~ 562 (815)
.+.+++++.|.+.+++.|..++..... | .+++++||+||||||||++|+++|++++..++.+++++..+
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~-- 77 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT-- 77 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc--
Confidence 345688999999999999887643110 1 23567999999999999999999999999999999877532
Q ss_pred cCccHHHHHHHHHHHhh------CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCC
Q 003503 563 FGESEANVREIFDKARQ------SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNR 636 (815)
Q Consensus 563 ~g~se~~i~~~F~~a~~------~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~ 636 (815)
...++.+...+.. ..+.+|+|||+|.+.... ....++.|+..++. .+..+|+++|.
T Consensus 78 ----~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~----------d~~~~~aL~~~l~~----~~~~iIli~n~ 139 (482)
T PRK04195 78 ----ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE----------DRGGARAILELIKK----AKQPIILTAND 139 (482)
T ss_pred ----HHHHHHHHHHhhccCcccCCCCeEEEEecCccccccc----------chhHHHHHHHHHHc----CCCCEEEeccC
Confidence 2233333333221 246799999999985421 11234555555552 23356678888
Q ss_pred CCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 003503 637 PDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEVCQRACKYA 709 (815)
Q Consensus 637 ~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~t~g~sg~di~~l~~~a~~~a 709 (815)
+..+.+..+| +....|.|++|+..++..+++..+...++. ++..+..|++.+. +|++.+++.....+
T Consensus 140 ~~~~~~k~Lr--sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~----GDlR~ain~Lq~~a 207 (482)
T PRK04195 140 PYDPSLRELR--NACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSG----GDLRSAINDLQAIA 207 (482)
T ss_pred ccccchhhHh--ccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CCHHHHHHHHHHHh
Confidence 8888774444 444689999999999999999988766554 2234677777544 48887777666544
No 131
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.46 E-value=6.9e-13 Score=156.75 Aligned_cols=181 Identities=24% Similarity=0.357 Sum_probs=120.2
Q ss_pred Ccccccccccchhhh---hhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchhh
Q 003503 484 NVSWEDIGGLDNVKR---ELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 560 (815)
Q Consensus 484 ~~~~~~i~g~~~~k~---~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~~ 560 (815)
+-+++++.|++.+.. .|++.+.. ....+++|+||||||||++|+++++.++..|+.+++...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-- 88 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-- 88 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh--
Confidence 456788888887763 34443321 122469999999999999999999999988888876421
Q ss_pred hccCccHHHHHHHHHHHh-----hCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecC
Q 003503 561 MWFGESEANVREIFDKAR-----QSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATN 635 (815)
Q Consensus 561 ~~~g~se~~i~~~F~~a~-----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn 635 (815)
..+.++.++..+. .....++||||||.+... ..+.|+..++ .+.+++|++|+
T Consensus 89 -----~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~--------------qQdaLL~~lE----~g~IiLI~aTT 145 (725)
T PRK13341 89 -----GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA--------------QQDALLPWVE----NGTITLIGATT 145 (725)
T ss_pred -----hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH--------------HHHHHHHHhc----CceEEEEEecC
Confidence 1223444444432 123569999999997421 2344555554 34577777664
Q ss_pred C--CCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhc-------cCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHH
Q 003503 636 R--PDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLR-------KSPIS-PDVDLSALARYTHGFSGADITEVCQRA 705 (815)
Q Consensus 636 ~--~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~-------~~~~~-~~~~~~~la~~t~g~sg~di~~l~~~a 705 (815)
. ...+++++++ |+ .++.|++++.+++..|++..+. ..++. ++.-+..|++... -+.+++.++++.+
T Consensus 146 enp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~-GD~R~lln~Le~a 221 (725)
T PRK13341 146 ENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVAN-GDARSLLNALELA 221 (725)
T ss_pred CChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 3 3468899997 65 4789999999999999998886 22222 1223566777653 3556666666665
Q ss_pred H
Q 003503 706 C 706 (815)
Q Consensus 706 ~ 706 (815)
+
T Consensus 222 ~ 222 (725)
T PRK13341 222 V 222 (725)
T ss_pred H
Confidence 5
No 132
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.45 E-value=7.5e-13 Score=149.60 Aligned_cols=172 Identities=17% Similarity=0.288 Sum_probs=116.2
Q ss_pred cceEEeCCCCCChhHHHHHHHHHh-----CCcEEEEeccchhhhccCccH-HHHHHHHHHHhhCCCeEEEEecchhhhhc
Q 003503 523 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESE-ANVREIFDKARQSAPCVLFFDELDSIATQ 596 (815)
Q Consensus 523 ~gilL~GppGtGKT~lakala~~~-----~~~~i~v~~~~l~~~~~g~se-~~i~~~F~~a~~~~p~ilfiDEid~l~~~ 596 (815)
.+++||||+|||||+|++++++++ +..++.+++.++...+..... ..+.. |.......+.+|+|||++.+.+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc
Confidence 469999999999999999999986 346788888887665532211 12222 33333335789999999998543
Q ss_pred cCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCC---CCccccCCCCC--cceeeccCCCHHHHHHHHHHH
Q 003503 597 RGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDI---IDPALLRPGRL--DQLIYIPLPDEASRLQIFKAC 671 (815)
Q Consensus 597 r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~---ld~allr~gRf--~~~i~~~~p~~~~r~~Il~~~ 671 (815)
. .....|+..++.+...++.+||++++.|+. +++.+.+ || ..++.+.+||.+.|.+|++..
T Consensus 210 ~------------~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~ 275 (440)
T PRK14088 210 T------------GVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKM 275 (440)
T ss_pred H------------HHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHH
Confidence 1 112234444444433445677766677765 4567776 66 467889999999999999999
Q ss_pred hccCC--CCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 003503 672 LRKSP--ISPDVDLSALARYTHGFSGADITEVCQRACKYAIR 711 (815)
Q Consensus 672 l~~~~--~~~~~~~~~la~~t~g~sg~di~~l~~~a~~~a~~ 711 (815)
+...+ ++++ -+..||+...+ +.++|..++.+....+..
T Consensus 276 ~~~~~~~l~~e-v~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~ 315 (440)
T PRK14088 276 LEIEHGELPEE-VLNFVAENVDD-NLRRLRGAIIKLLVYKET 315 (440)
T ss_pred HHhcCCCCCHH-HHHHHHhcccc-CHHHHHHHHHHHHHHHHH
Confidence 87544 4333 36777776653 778888888877655543
No 133
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.44 E-value=2e-12 Score=145.63 Aligned_cols=178 Identities=23% Similarity=0.321 Sum_probs=117.3
Q ss_pred CcceEEeCCCCCChhHHHHHHHHHh-----CCcEEEEeccchhh----------hccC-------cc-HHHHHHHHHHHh
Q 003503 522 SKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLT----------MWFG-------ES-EANVREIFDKAR 578 (815)
Q Consensus 522 ~~gilL~GppGtGKT~lakala~~~-----~~~~i~v~~~~l~~----------~~~g-------~s-e~~i~~~F~~a~ 578 (815)
+.+++++||||||||++++.++..+ +..++.+++....+ ...+ .+ ...+..+++...
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 134 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLD 134 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 3469999999999999999999886 46688888754321 1112 11 222333444333
Q ss_pred h-CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCC---CCCccccCCCCCc-ce
Q 003503 579 Q-SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPD---IIDPALLRPGRLD-QL 653 (815)
Q Consensus 579 ~-~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~---~ld~allr~gRf~-~~ 653 (815)
. ..+.||+|||+|.+.... ...++..|+..++... ..++.+|+++|.++ .+++.+.+ ||. ..
T Consensus 135 ~~~~~~viviDE~d~l~~~~----------~~~~l~~l~~~~~~~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~ 201 (394)
T PRK00411 135 ERDRVLIVALDDINYLFEKE----------GNDVLYSLLRAHEEYP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEE 201 (394)
T ss_pred hcCCEEEEEECCHhHhhccC----------CchHHHHHHHhhhccC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcce
Confidence 2 346899999999997221 1236677777666543 23788899988764 46677665 663 67
Q ss_pred eeccCCCHHHHHHHHHHHhccC---CCCCcccHHHHHHHcCCCC--HHHHHHHHHHHHHHHHHH
Q 003503 654 IYIPLPDEASRLQIFKACLRKS---PISPDVDLSALARYTHGFS--GADITEVCQRACKYAIRE 712 (815)
Q Consensus 654 i~~~~p~~~~r~~Il~~~l~~~---~~~~~~~~~~la~~t~g~s--g~di~~l~~~a~~~a~~~ 712 (815)
|+|++++.++..+|++..++.. ..-.+.-++.+++.+.+.+ .+.+..+|..|+..|..+
T Consensus 202 i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 202 IYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred eecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 8999999999999999888542 1112333566777664433 344557788877776653
No 134
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.44 E-value=1.5e-12 Score=148.80 Aligned_cols=173 Identities=14% Similarity=0.277 Sum_probs=118.4
Q ss_pred cceEEeCCCCCChhHHHHHHHHHh-----CCcEEEEeccchhhhccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhcc
Q 003503 523 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 597 (815)
Q Consensus 523 ~gilL~GppGtGKT~lakala~~~-----~~~~i~v~~~~l~~~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r 597 (815)
+.++|||++|||||+|++++++++ +..+++++..++...++..........|.+-.. .+++|+||||+.+..+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCCH
Confidence 349999999999999999999986 356789999888877654433333334554333 35899999999986431
Q ss_pred CCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCC---CCCccccCCCCC--cceeeccCCCHHHHHHHHHHHh
Q 003503 598 GSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPD---IIDPALLRPGRL--DQLIYIPLPDEASRLQIFKACL 672 (815)
Q Consensus 598 ~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~---~ld~allr~gRf--~~~i~~~~p~~~~r~~Il~~~l 672 (815)
... ..|+..++.+...++.+||++...|. .+++.|.+ || ..++.+..||.+.|.+||+.++
T Consensus 394 ---------~tq---eeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 394 ---------STQ---EEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred ---------HHH---HHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 112 23334444333334445554444443 46788887 77 5777999999999999999999
Q ss_pred ccCCCCCccc-HHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 003503 673 RKSPISPDVD-LSALARYTHGFSGADITEVCQRACKYAIR 711 (815)
Q Consensus 673 ~~~~~~~~~~-~~~la~~t~g~sg~di~~l~~~a~~~a~~ 711 (815)
...++.-+.+ +..|+.+.. -+.++|..++.+....+..
T Consensus 460 ~~r~l~l~~eVi~yLa~r~~-rnvR~LegaL~rL~a~a~~ 498 (617)
T PRK14086 460 VQEQLNAPPEVLEFIASRIS-RNIRELEGALIRVTAFASL 498 (617)
T ss_pred HhcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHh
Confidence 7765553333 566777655 3678888888877665544
No 135
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.43 E-value=2.3e-12 Score=133.79 Aligned_cols=209 Identities=22% Similarity=0.382 Sum_probs=137.7
Q ss_pred cceEEeCCCCCChhHHHHHHHHHhCCc---EEEEeccchhhhccCccHHHHHHHHHHHhhC-----CCeEEEEecchhhh
Q 003503 523 KGVLFYGPPGCGKTLLAKAIANECQAN---FISVKGPELLTMWFGESEANVREIFDKARQS-----APCVLFFDELDSIA 594 (815)
Q Consensus 523 ~gilL~GppGtGKT~lakala~~~~~~---~i~v~~~~l~~~~~g~se~~i~~~F~~a~~~-----~p~ilfiDEid~l~ 594 (815)
.+++|+||||||||+||+.|+...+.+ ||.++... ...+.+|.+|+.+... ...|||+|||+.+.
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN 235 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN 235 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh
Confidence 469999999999999999999998766 77766532 3457789999888543 35799999999985
Q ss_pred hccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEec--CCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHh
Q 003503 595 TQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGAT--NRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACL 672 (815)
Q Consensus 595 ~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aT--n~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l 672 (815)
... ...||-.++ .+.+++|+|| |..-.|+.||++ |+ +++.+..........||.+-+
T Consensus 236 ksQ--------------QD~fLP~VE----~G~I~lIGATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 236 KSQ--------------QDTFLPHVE----NGDITLIGATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred hhh--------------hhcccceec----cCceEEEecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHH
Confidence 431 234555443 5678888888 555679999998 77 366667777777788887644
Q ss_pred c------cC--CCCC------cccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccc
Q 003503 673 R------KS--PISP------DVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIERERRKRENPEAMEEDEVDD 738 (815)
Q Consensus 673 ~------~~--~~~~------~~~~~~la~~t~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (815)
. +. ++.. +--++.|+..++| |-+..+ .++.=.......+. . ...
T Consensus 295 a~l~dser~~~~l~n~s~~ve~siidyla~lsdG----DaR~aL-----N~Lems~~m~~tr~---g----------~~~ 352 (554)
T KOG2028|consen 295 ASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDG----DARAAL-----NALEMSLSMFCTRS---G----------QSS 352 (554)
T ss_pred HhhccccccCCCCCCcchhhhHHHHHHHHHhcCc----hHHHHH-----HHHHHHHHHHHhhc---C----------Ccc
Confidence 2 11 2222 1124556665555 433322 22221111111000 0 012
Q ss_pred cccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhcccCCCC
Q 003503 739 VAEIKAVHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGFGS 781 (815)
Q Consensus 739 ~~~i~~~~f~~a~~~~~~svs~~~~~~y~~~~~~~~~~~~~~~ 781 (815)
...++.+|..++++.-.---....-+.|.-+..-+++.||-..
T Consensus 353 ~~~lSidDvke~lq~s~~~YDr~Ge~HYntISA~HKSmRG~D~ 395 (554)
T KOG2028|consen 353 RVLLSIDDVKEGLQRSHILYDRAGEEHYNTISALHKSMRGSDQ 395 (554)
T ss_pred cceecHHHHHHHHhhccceecccchhHHHHHHHHHHhhcCCcc
Confidence 3479999999999876544556677889999999999988644
No 136
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=1.4e-12 Score=151.02 Aligned_cols=186 Identities=22% Similarity=0.321 Sum_probs=132.0
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCc-------------
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------------- 549 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~------------- 549 (815)
...+|++|+|++.+++.|...+.. + +.+..+||+||+|+||||+|+++|..+...
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~-----------~-rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~ 78 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDL-----------G-RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDN 78 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHH
Confidence 346799999999999988776543 1 234458999999999999999999987542
Q ss_pred -----------EEEEeccchhhhccCccHHHHHHHHHHH----hhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHH
Q 003503 550 -----------FISVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQ 614 (815)
Q Consensus 550 -----------~i~v~~~~l~~~~~g~se~~i~~~F~~a----~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~ 614 (815)
++.+++..- ..-..+|++.+.+ ......|+||||+|.|. ....|.
T Consensus 79 C~~i~~g~~~D~ieidaas~------~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls--------------~~a~NA 138 (647)
T PRK07994 79 CREIEQGRFVDLIEIDAASR------TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS--------------RHSFNA 138 (647)
T ss_pred HHHHHcCCCCCceeeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC--------------HHHHHH
Confidence 333433210 1123455554443 23456799999999983 235788
Q ss_pred HHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHcCCC
Q 003503 615 LLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGF 693 (815)
Q Consensus 615 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~t~g~ 693 (815)
||..|+. ....+++|.+|+.++.|-+.+++ |+ ..++|.+++.++....++..++..++..+ ..+..|++.+.|
T Consensus 139 LLKtLEE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G- 212 (647)
T PRK07994 139 LLKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG- 212 (647)
T ss_pred HHHHHHc--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 9998885 34566777778888888888887 86 78999999999999999988876655433 335667766554
Q ss_pred CHHHHHHHHHHHH
Q 003503 694 SGADITEVCQRAC 706 (815)
Q Consensus 694 sg~di~~l~~~a~ 706 (815)
+.++..+++..|.
T Consensus 213 s~R~Al~lldqai 225 (647)
T PRK07994 213 SMRDALSLTDQAI 225 (647)
T ss_pred CHHHHHHHHHHHH
Confidence 6666666665543
No 137
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=2.1e-12 Score=146.70 Aligned_cols=190 Identities=19% Similarity=0.290 Sum_probs=139.1
Q ss_pred cCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCc------------
Q 003503 482 VPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------------ 549 (815)
Q Consensus 482 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~------------ 549 (815)
...-+|+++.|++.+.+.|...+.. + +.+.++||+||+|||||++|+++|..+...
T Consensus 15 yRP~~f~dliGq~~vv~~L~~ai~~-----------~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C 82 (507)
T PRK06645 15 YRPSNFAELQGQEVLVKVLSYTILN-----------D-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC 82 (507)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC
Confidence 3456799999999999988765432 1 335679999999999999999999987542
Q ss_pred ----------------EEEEeccchhhhccCccHHHHHHHHHHHhhC----CCeEEEEecchhhhhccCCCCCCCCchHH
Q 003503 550 ----------------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSTGDAGGAAD 609 (815)
Q Consensus 550 ----------------~i~v~~~~l~~~~~g~se~~i~~~F~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~ 609 (815)
++.+++.. ..+...++.+.+.+... ...|+||||++.+. .
T Consensus 83 ~~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls--------------~ 142 (507)
T PRK06645 83 EQCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS--------------K 142 (507)
T ss_pred CCChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC--------------H
Confidence 12222110 12345678888777543 34699999999873 2
Q ss_pred HHHHHHHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHH
Q 003503 610 RVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALAR 688 (815)
Q Consensus 610 ~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~ 688 (815)
..++.||..|+. ....+++|.+|+.++.+.+.+.+ |+ .+++|.+++.++...+++..+++.++.-+ ..+..+++
T Consensus 143 ~a~naLLk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~ 217 (507)
T PRK06645 143 GAFNALLKTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAY 217 (507)
T ss_pred HHHHHHHHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 346778888874 34466777777888889999887 88 57899999999999999999987765433 33677887
Q ss_pred HcCCCCHHHHHHHHHHHHHHH
Q 003503 689 YTHGFSGADITEVCQRACKYA 709 (815)
Q Consensus 689 ~t~g~sg~di~~l~~~a~~~a 709 (815)
.+.| +.+++.+++..++.++
T Consensus 218 ~s~G-slR~al~~Ldkai~~~ 237 (507)
T PRK06645 218 KSEG-SARDAVSILDQAASMS 237 (507)
T ss_pred HcCC-CHHHHHHHHHHHHHhh
Confidence 7765 8888888887776554
No 138
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=3.6e-12 Score=152.48 Aligned_cols=186 Identities=19% Similarity=0.256 Sum_probs=129.9
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCC--------------
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-------------- 548 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~-------------- 548 (815)
...+|++|+|++.+++.|+..+.. + +....+||+||+|||||++|++||+.+.+
T Consensus 10 RP~~f~eiiGqe~v~~~L~~~i~~-----------~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~s 77 (824)
T PRK07764 10 RPATFAEVIGQEHVTEPLSTALDS-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDS 77 (824)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHh-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHH
Confidence 456899999999999988877542 1 23445899999999999999999999853
Q ss_pred ------------cEEEEeccchhhhccCccHHHHHHHHH----HHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHH
Q 003503 549 ------------NFISVKGPELLTMWFGESEANVREIFD----KARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVL 612 (815)
Q Consensus 549 ------------~~i~v~~~~l~~~~~g~se~~i~~~F~----~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl 612 (815)
.++.+++... -.-..||++-+ ........|+||||+|.|- ....
T Consensus 78 C~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt--------------~~a~ 137 (824)
T PRK07764 78 CVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVT--------------PQGF 137 (824)
T ss_pred HHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcC--------------HHHH
Confidence 1233333211 01233444333 3334556899999999983 2356
Q ss_pred HHHHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHHcC
Q 003503 613 NQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSALARYTH 691 (815)
Q Consensus 613 ~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-~~~~la~~t~ 691 (815)
|.||+.|+.. ...+++|++|+.++.|-+.+.+ |+ .++.|..++.++..++++..+++.++.-+. .+..|++...
T Consensus 138 NaLLK~LEEp--P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sg 212 (824)
T PRK07764 138 NALLKIVEEP--PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGG 212 (824)
T ss_pred HHHHHHHhCC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 7888888854 3466777777888888888887 76 588999999999999999988776665322 3555666555
Q ss_pred CCCHHHHHHHHHHHH
Q 003503 692 GFSGADITEVCQRAC 706 (815)
Q Consensus 692 g~sg~di~~l~~~a~ 706 (815)
| +-+++.+++...+
T Consensus 213 G-dlR~Al~eLEKLi 226 (824)
T PRK07764 213 G-SVRDSLSVLDQLL 226 (824)
T ss_pred C-CHHHHHHHHHHHH
Confidence 4 6666666666554
No 139
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=4.7e-12 Score=145.99 Aligned_cols=188 Identities=20% Similarity=0.271 Sum_probs=136.7
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCc-------------
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------------- 549 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~------------- 549 (815)
..-+|++|+|++.+++.|+..+... +.+.++||+||+|||||++|+++|+.+...
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~s 78 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQS 78 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHH
Confidence 4567999999999999998876531 334679999999999999999999986532
Q ss_pred -----------EEEEeccchhhhccCccHHHHHHHHHHHhh----CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHH
Q 003503 550 -----------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQ 614 (815)
Q Consensus 550 -----------~i~v~~~~l~~~~~g~se~~i~~~F~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~ 614 (815)
++.+++.. +.....++++++.+.. ....|+||||+|.+. ....+.
T Consensus 79 Cr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls--------------~~A~NA 138 (709)
T PRK08691 79 CTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS--------------KSAFNA 138 (709)
T ss_pred HHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC--------------HHHHHH
Confidence 12222211 1223467777766532 234799999998862 235678
Q ss_pred HHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHcCCC
Q 003503 615 LLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGF 693 (815)
Q Consensus 615 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~t~g~ 693 (815)
||..|+.. .+.+.+|.+||.+..+.+.+++ |+ ..+.|++++.++....++..+++.++.-+ ..+..|++... .
T Consensus 139 LLKtLEEP--p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~-G 212 (709)
T PRK08691 139 MLKTLEEP--PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAA-G 212 (709)
T ss_pred HHHHHHhC--CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC-C
Confidence 88888853 3456777778888888888875 87 57888899999999999999987766532 23677777665 5
Q ss_pred CHHHHHHHHHHHHHH
Q 003503 694 SGADITEVCQRACKY 708 (815)
Q Consensus 694 sg~di~~l~~~a~~~ 708 (815)
+.+++.+++..+..+
T Consensus 213 slRdAlnLLDqaia~ 227 (709)
T PRK08691 213 SMRDALSLLDQAIAL 227 (709)
T ss_pred CHHHHHHHHHHHHHh
Confidence 788888888776654
No 140
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=2.1e-12 Score=144.54 Aligned_cols=163 Identities=25% Similarity=0.382 Sum_probs=125.5
Q ss_pred ccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEec------hhhhh-
Q 003503 215 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLING------PEIMS- 287 (815)
Q Consensus 215 ~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~------~~l~~- 287 (815)
+|=-|+++.+++|.|++...... |-..++-++|+||||+|||++++.||..++..|+.++- +++.+
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 34579999999999998753222 23457789999999999999999999999999977653 33332
Q ss_pred --hhhchhHHHHHHHHHHHHhcCCcEEEecccccccCC-CCCchhHHHHHHHHHHHHhhhccc-------------CCCc
Q 003503 288 --KLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPK-REKTHGEVERRIVSQLLTLMDGLK-------------SRAH 351 (815)
Q Consensus 288 --~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~-~~~~~~~~~~~v~~~Ll~~ld~~~-------------~~~~ 351 (815)
.|+|....++-+.+.....+.| +++|||+|.+... ++.+. ++|+.++|.-+ .-.+
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qGDPa--------sALLElLDPEQNanFlDHYLdVp~DLSk 554 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQGDPA--------SALLELLDPEQNANFLDHYLDVPVDLSK 554 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCCChH--------HHHHHhcChhhccchhhhccccccchhh
Confidence 5777777787777888777777 8889999999842 22222 45666665322 1257
Q ss_pred EEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHh
Q 003503 352 VIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHT 396 (815)
Q Consensus 352 vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~ 396 (815)
|++|+|.|..+.|++.|+. |+ ..|+++-+..++...|.+.|+
T Consensus 555 VLFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 555 VLFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred eEEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhh
Confidence 9999999999999999987 76 558899999999999988775
No 141
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=3.4e-12 Score=146.10 Aligned_cols=188 Identities=19% Similarity=0.244 Sum_probs=134.5
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCc-------------
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------------- 549 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~------------- 549 (815)
..-+|++|+|++.+++.|...+... ..+..+||+||+|||||++|+++|+.+...
T Consensus 11 RP~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 78 (509)
T PRK14958 11 RPRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCEN 78 (509)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHH
Confidence 3567999999999999998776431 234468999999999999999999987532
Q ss_pred -----------EEEEeccchhhhccCccHHHHHHHHHHHh----hCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHH
Q 003503 550 -----------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQ 614 (815)
Q Consensus 550 -----------~i~v~~~~l~~~~~g~se~~i~~~F~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~ 614 (815)
++.+++.. ...-..+|++.+.+. .....|+||||+|.+. ....+.
T Consensus 79 C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls--------------~~a~na 138 (509)
T PRK14958 79 CREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS--------------GHSFNA 138 (509)
T ss_pred HHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC--------------HHHHHH
Confidence 44454432 122344666665543 2345799999999983 234678
Q ss_pred HHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHcCCC
Q 003503 615 LLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGF 693 (815)
Q Consensus 615 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~t~g~ 693 (815)
||..|+... ..+.+|.+|+.++.+.+.+++ |+ ..+.|.+++.++....++..+++.++.- +..+..+++.+. .
T Consensus 139 LLk~LEepp--~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~-G 212 (509)
T PRK14958 139 LLKTLEEPP--SHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAAN-G 212 (509)
T ss_pred HHHHHhccC--CCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-C
Confidence 888888643 456666677778888777877 77 5788999999888888888887766542 234667777765 4
Q ss_pred CHHHHHHHHHHHHHH
Q 003503 694 SGADITEVCQRACKY 708 (815)
Q Consensus 694 sg~di~~l~~~a~~~ 708 (815)
+.+++.+++..+..+
T Consensus 213 slR~al~lLdq~ia~ 227 (509)
T PRK14958 213 SVRDALSLLDQSIAY 227 (509)
T ss_pred cHHHHHHHHHHHHhc
Confidence 778888888766543
No 142
>PRK06893 DNA replication initiation factor; Validated
Probab=99.39 E-value=3.2e-12 Score=132.44 Aligned_cols=160 Identities=11% Similarity=0.161 Sum_probs=102.3
Q ss_pred cceEEeCCCCCChhHHHHHHHHHhC---CcEEEEeccchhhhccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCC
Q 003503 523 KGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGS 599 (815)
Q Consensus 523 ~gilL~GppGtGKT~lakala~~~~---~~~i~v~~~~l~~~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~ 599 (815)
..++||||||||||+|++++|+++. .....++..+. ......+++..+ ...+|+|||++.+.+.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~~~--~~dlLilDDi~~~~~~~-- 107 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS--------QYFSPAVLENLE--QQDLVCLDDLQAVIGNE-- 107 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh--------hhhhHHHHhhcc--cCCEEEEeChhhhcCCh--
Confidence 3489999999999999999998862 33344433221 111123343333 34699999999985321
Q ss_pred CCCCCCchHHHHHHHHHhccccCCCCC-cEEEEEecCCCCCCC---ccccCCCCCcceeeccCCCHHHHHHHHHHHhccC
Q 003503 600 STGDAGGAADRVLNQLLTEMDGMNAKK-TVFIIGATNRPDIID---PALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS 675 (815)
Q Consensus 600 ~~~~~~~~~~~vl~~lL~~ld~~~~~~-~v~vi~aTn~~~~ld---~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~ 675 (815)
..... |+..++.....+ .++|++++..|..++ +.+.++.+++..+.+++||.++|.+|++..+...
T Consensus 108 -------~~~~~---l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~ 177 (229)
T PRK06893 108 -------EWELA---IFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQR 177 (229)
T ss_pred -------HHHHH---HHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHc
Confidence 11223 333333333333 455666667777654 8888855667899999999999999999888654
Q ss_pred CCCCc-ccHHHHHHHcCCCCHHHHHHHHHHH
Q 003503 676 PISPD-VDLSALARYTHGFSGADITEVCQRA 705 (815)
Q Consensus 676 ~~~~~-~~~~~la~~t~g~sg~di~~l~~~a 705 (815)
++.-+ .-+..|+++..| +.+.+.+++...
T Consensus 178 ~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l 207 (229)
T PRK06893 178 GIELSDEVANFLLKRLDR-DMHTLFDALDLL 207 (229)
T ss_pred CCCCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 44322 236677776653 666777666654
No 143
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.39 E-value=6.2e-12 Score=138.55 Aligned_cols=189 Identities=21% Similarity=0.318 Sum_probs=120.8
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhC-----CcEEEEeccc
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPE 557 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~-----~~~i~v~~~~ 557 (815)
.+.+|+++.|.+.+++.|...+.. + ...+++|+||||||||++|+++++++. .+++.+++.+
T Consensus 10 ~P~~~~~~~g~~~~~~~L~~~~~~-----------~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~ 76 (337)
T PRK12402 10 RPALLEDILGQDEVVERLSRAVDS-----------P--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVAD 76 (337)
T ss_pred CCCcHHHhcCCHHHHHHHHHHHhC-----------C--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhh
Confidence 345688899999998888776542 1 123699999999999999999999874 3467788776
Q ss_pred hhhhc-------------cCc-------cHHHHHHHHHHHhh-----CCCeEEEEecchhhhhccCCCCCCCCchHHHHH
Q 003503 558 LLTMW-------------FGE-------SEANVREIFDKARQ-----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVL 612 (815)
Q Consensus 558 l~~~~-------------~g~-------se~~i~~~F~~a~~-----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl 612 (815)
+...+ .+. ....++.+.+.... ..+.+||+||+|.+.. ...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~--------------~~~ 142 (337)
T PRK12402 77 FFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE--------------DAQ 142 (337)
T ss_pred hhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH--------------HHH
Confidence 54221 111 01223333323222 2346999999998732 123
Q ss_pred HHHHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcC
Q 003503 613 NQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTH 691 (815)
Q Consensus 613 ~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~t~ 691 (815)
+.|+..|+.... .. .+|.+|+.+..+.+.+.+ |+ ..+.|++|+.++...+++..+++.++. ++..+..|++.+
T Consensus 143 ~~L~~~le~~~~-~~-~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~- 216 (337)
T PRK12402 143 QALRRIMEQYSR-TC-RFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYA- 216 (337)
T ss_pred HHHHHHHHhccC-CC-eEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-
Confidence 445555554332 23 344455556667777776 76 578999999999999999988776654 233466777755
Q ss_pred CCCHHHHHHHHHHHHH
Q 003503 692 GFSGADITEVCQRACK 707 (815)
Q Consensus 692 g~sg~di~~l~~~a~~ 707 (815)
++|++.+++....
T Consensus 217 ---~gdlr~l~~~l~~ 229 (337)
T PRK12402 217 ---GGDLRKAILTLQT 229 (337)
T ss_pred ---CCCHHHHHHHHHH
Confidence 3455555554443
No 144
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=4.6e-12 Score=144.66 Aligned_cols=184 Identities=22% Similarity=0.348 Sum_probs=127.8
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCC--------------
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-------------- 548 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~-------------- 548 (815)
...+|++|.|++.+++.|...+... ..+..+||+|||||||||+|+++|..+..
T Consensus 9 RP~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc 76 (504)
T PRK14963 9 RPITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC 76 (504)
T ss_pred CCCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh
Confidence 4568999999999999998776531 23345799999999999999999988742
Q ss_pred ---------cEEEEeccchhhhccCccHHHHHHHHHHHhh----CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHH
Q 003503 549 ---------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQL 615 (815)
Q Consensus 549 ---------~~i~v~~~~l~~~~~g~se~~i~~~F~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~l 615 (815)
.++.+++.. ..+...++.+.+.+.. ..+.|+||||+|.+. ...++.|
T Consensus 77 ~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls--------------~~a~naL 136 (504)
T PRK14963 77 LAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS--------------KSAFNAL 136 (504)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC--------------HHHHHHH
Confidence 134444321 1123445665544432 345799999998762 3456788
Q ss_pred HhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHcCCCC
Q 003503 616 LTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGFS 694 (815)
Q Consensus 616 L~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~t~g~s 694 (815)
|..|+.. ...+++|.+||.++.+.+.+.+ |+. ++.|++|+.++....++..+++.++.-+ ..+..+++.+.| +
T Consensus 137 Lk~LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-d 210 (504)
T PRK14963 137 LKTLEEP--PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-A 210 (504)
T ss_pred HHHHHhC--CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 8888753 3456777778888999999987 775 7999999999999999998877665422 235556655443 4
Q ss_pred HHHHHHHHHH
Q 003503 695 GADITEVCQR 704 (815)
Q Consensus 695 g~di~~l~~~ 704 (815)
-+++.++++.
T Consensus 211 lR~aln~Lek 220 (504)
T PRK14963 211 MRDAESLLER 220 (504)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 145
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=7.1e-12 Score=144.63 Aligned_cols=188 Identities=21% Similarity=0.281 Sum_probs=131.6
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCC--------------
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-------------- 548 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~-------------- 548 (815)
...+|++|.|++.+++.|+..+.. + +.+..+||+||+|||||++|+++|+.+..
T Consensus 8 RP~~f~eivGq~~i~~~L~~~i~~-----------~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 75 (584)
T PRK14952 8 RPATFAEVVGQEHVTEPLSSALDA-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCES 75 (584)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHH
Confidence 345799999999999998887653 1 23445899999999999999999988653
Q ss_pred ------------cEEEEeccchhhhccCccHHHHHHHHHHH----hhCCCeEEEEecchhhhhccCCCCCCCCchHHHHH
Q 003503 549 ------------NFISVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVL 612 (815)
Q Consensus 549 ------------~~i~v~~~~l~~~~~g~se~~i~~~F~~a----~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl 612 (815)
.++.++++.. ..-..++++-+.+ ......|++|||+|.+- ....
T Consensus 76 C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt--------------~~A~ 135 (584)
T PRK14952 76 CVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT--------------TAGF 135 (584)
T ss_pred HHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC--------------HHHH
Confidence 1333333211 0123344444333 23345799999999983 2357
Q ss_pred HHHHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHHcC
Q 003503 613 NQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSALARYTH 691 (815)
Q Consensus 613 ~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-~~~~la~~t~ 691 (815)
+.||..|+.. ...+++|.+|+.++.|.+.+++ |. .++.|.+++.++..+.++..+++.++.-+. .+..+++..
T Consensus 136 NALLK~LEEp--p~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s- 209 (584)
T PRK14952 136 NALLKIVEEP--PEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAG- 209 (584)
T ss_pred HHHHHHHhcC--CCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-
Confidence 8888888853 4567777788888888899887 75 589999999999999999888876654332 345555544
Q ss_pred CCCHHHHHHHHHHHHHH
Q 003503 692 GFSGADITEVCQRACKY 708 (815)
Q Consensus 692 g~sg~di~~l~~~a~~~ 708 (815)
+.+.+++.+++..++..
T Consensus 210 ~GdlR~aln~Ldql~~~ 226 (584)
T PRK14952 210 GGSPRDTLSVLDQLLAG 226 (584)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 45777777777766544
No 146
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=3.4e-12 Score=143.83 Aligned_cols=188 Identities=20% Similarity=0.235 Sum_probs=137.7
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhC---------------
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ--------------- 547 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~--------------- 547 (815)
...+|+|++|++.+++.|...+.. + +.+.++||+||+|+||||+|+++|..+.
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~~~-----------~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~ 75 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAFTL-----------N-KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHN 75 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHH
Confidence 346799999999999988766543 1 3356799999999999999999998652
Q ss_pred ---------CcEEEEeccchhhhccCccHHHHHHHHHHHhhC----CCeEEEEecchhhhhccCCCCCCCCchHHHHHHH
Q 003503 548 ---------ANFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQ 614 (815)
Q Consensus 548 ---------~~~i~v~~~~l~~~~~g~se~~i~~~F~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~ 614 (815)
..++.+++++- .+-..++++.+.+... ...|++|||+|.+. ...++.
T Consensus 76 C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls--------------~~A~Na 135 (491)
T PRK14964 76 CISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS--------------NSAFNA 135 (491)
T ss_pred HHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC--------------HHHHHH
Confidence 23455555421 2345577777766543 35699999999873 235688
Q ss_pred HHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHcCCC
Q 003503 615 LLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGF 693 (815)
Q Consensus 615 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~t~g~ 693 (815)
||..|+.. ...+.+|.+|+.++.+.+.+++ |+ ..+.|.+++.++..+.++..+++.++.- +..+..|++.+. .
T Consensus 136 LLK~LEeP--p~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~-G 209 (491)
T PRK14964 136 LLKTLEEP--APHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSS-G 209 (491)
T ss_pred HHHHHhCC--CCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-C
Confidence 88888854 3456777777778888888887 77 5789999999999999999887766542 234667777765 4
Q ss_pred CHHHHHHHHHHHHHH
Q 003503 694 SGADITEVCQRACKY 708 (815)
Q Consensus 694 sg~di~~l~~~a~~~ 708 (815)
+.+++.+++..+..+
T Consensus 210 slR~alslLdqli~y 224 (491)
T PRK14964 210 SMRNALFLLEQAAIY 224 (491)
T ss_pred CHHHHHHHHHHHHHh
Confidence 777887777776654
No 147
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=1.6e-11 Score=142.53 Aligned_cols=188 Identities=24% Similarity=0.346 Sum_probs=137.0
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCC--------------
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-------------- 548 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~-------------- 548 (815)
.+.+|+++.|++.+++.|+..+.. -..++.+||+||+|||||++|+.+|..+..
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 356799999999999998877653 123456899999999999999999988642
Q ss_pred ----------cEEEEeccchhhhccCccHHHHHHHHHHHhh----CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHH
Q 003503 549 ----------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQ 614 (815)
Q Consensus 549 ----------~~i~v~~~~l~~~~~g~se~~i~~~F~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~ 614 (815)
+++.+++.. +.+...++++...+.. ....|++|||+|.+. ....+.
T Consensus 79 C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt--------------~~a~na 138 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS--------------TGAFNA 138 (559)
T ss_pred HHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------------HHHHHH
Confidence 344444321 2334567777777653 335799999999873 235678
Q ss_pred HHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHcCCC
Q 003503 615 LLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGF 693 (815)
Q Consensus 615 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~t~g~ 693 (815)
||..|+.. ...+++|.+|+.++.+.+.+++ |+. .+.|++|+..+...+++..+++.++.-+ ..+..++....|
T Consensus 139 LLKtLEep--p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G- 212 (559)
T PRK05563 139 LLKTLEEP--PAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG- 212 (559)
T ss_pred HHHHhcCC--CCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 88888853 3456666677788999999887 875 7889999999999999998887765433 346677776665
Q ss_pred CHHHHHHHHHHHHHH
Q 003503 694 SGADITEVCQRACKY 708 (815)
Q Consensus 694 sg~di~~l~~~a~~~ 708 (815)
+.++..+++..+..+
T Consensus 213 ~~R~al~~Ldq~~~~ 227 (559)
T PRK05563 213 GMRDALSILDQAISF 227 (559)
T ss_pred CHHHHHHHHHHHHHh
Confidence 777777777666543
No 148
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=5.1e-12 Score=145.18 Aligned_cols=184 Identities=18% Similarity=0.267 Sum_probs=126.6
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCc-------------
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------------- 549 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~------------- 549 (815)
...+|++|.|++.+++.|...+... +....+||+||+|||||++|+++|+.+...
T Consensus 11 RP~sf~dIiGQe~v~~~L~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~s 78 (624)
T PRK14959 11 RPQTFAEVAGQETVKAILSRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQ 78 (624)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHH
Confidence 4568999999999999888776431 224579999999999999999999987542
Q ss_pred -----------EEEEeccchhhhccCccHHHHHHHHHH----HhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHH
Q 003503 550 -----------FISVKGPELLTMWFGESEANVREIFDK----ARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQ 614 (815)
Q Consensus 550 -----------~i~v~~~~l~~~~~g~se~~i~~~F~~----a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~ 614 (815)
++.+++..- ..-..++.+.+. .......|+||||+|.+. ....+.
T Consensus 79 C~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt--------------~~a~na 138 (624)
T PRK14959 79 CRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT--------------REAFNA 138 (624)
T ss_pred HHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC--------------HHHHHH
Confidence 344433211 112233333222 223345799999999983 234688
Q ss_pred HHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcCCC
Q 003503 615 LLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGF 693 (815)
Q Consensus 615 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~t~g~ 693 (815)
||..|+.. ...+++|++||.++.+.+.+++ |+. ++.|++++.++...+++..+.+.++. ++..+..|++.+.|
T Consensus 139 LLk~LEEP--~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G- 212 (624)
T PRK14959 139 LLKTLEEP--PARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG- 212 (624)
T ss_pred HHHHhhcc--CCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 88888753 3467788888888888888887 874 78999999999999999888776543 22346667776553
Q ss_pred CHHHHHHHHHH
Q 003503 694 SGADITEVCQR 704 (815)
Q Consensus 694 sg~di~~l~~~ 704 (815)
+.+++.+++..
T Consensus 213 dlR~Al~lLeq 223 (624)
T PRK14959 213 SVRDSMSLLGQ 223 (624)
T ss_pred CHHHHHHHHHH
Confidence 44444454443
No 149
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.37 E-value=8.7e-12 Score=143.85 Aligned_cols=167 Identities=22% Similarity=0.317 Sum_probs=110.4
Q ss_pred eEEeCCCCCChhHHHHHHHHHhC----------CcEEEEeccchhhhc----------------cC-ccHHHHHHHHHHH
Q 003503 525 VLFYGPPGCGKTLLAKAIANECQ----------ANFISVKGPELLTMW----------------FG-ESEANVREIFDKA 577 (815)
Q Consensus 525 ilL~GppGtGKT~lakala~~~~----------~~~i~v~~~~l~~~~----------------~g-~se~~i~~~F~~a 577 (815)
++++|+||||||++++.+..++. +.++.|++..+...+ .| .+...+..+|...
T Consensus 784 LYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L 863 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQN 863 (1164)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhh
Confidence 56999999999999999987762 457889885433221 01 1234566677665
Q ss_pred h--hCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCC---CCCCCccccCCCCCcc
Q 003503 578 R--QSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNR---PDIIDPALLRPGRLDQ 652 (815)
Q Consensus 578 ~--~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~---~~~ld~allr~gRf~~ 652 (815)
. .....||+|||||.|... ...++-.|+.... ....+++|||++|. ++.|+|.+.+ ||..
T Consensus 864 ~k~~r~v~IIILDEID~L~kK-----------~QDVLYnLFR~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~ 928 (1164)
T PTZ00112 864 KKDNRNVSILIIDEIDYLITK-----------TQKVLFTLFDWPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAF 928 (1164)
T ss_pred hcccccceEEEeehHhhhCcc-----------HHHHHHHHHHHhh--ccCCeEEEEEecCchhcchhhhhhhhh--cccc
Confidence 2 233579999999999642 2345555555433 23457999999986 5567888876 6653
Q ss_pred -eeeccCCCHHHHHHHHHHHhccCC-CCCcccHHHHHHHcCCCCHHHHH---HHHHHHHH
Q 003503 653 -LIYIPLPDEASRLQIFKACLRKSP-ISPDVDLSALARYTHGFSGADIT---EVCQRACK 707 (815)
Q Consensus 653 -~i~~~~p~~~~r~~Il~~~l~~~~-~~~~~~~~~la~~t~g~sg~di~---~l~~~a~~ 707 (815)
.|.|++++.+++.+||+..+.... +-.+.-++.+|+.....+ +|++ .+|+.|+.
T Consensus 929 eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~S-GDARKALDILRrAgE 987 (1164)
T PTZ00112 929 GRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVS-GDIRKALQICRKAFE 987 (1164)
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcC-CHHHHHHHHHHHHHh
Confidence 478899999999999999987542 222333666776554333 3444 45555554
No 150
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=2e-11 Score=136.13 Aligned_cols=186 Identities=18% Similarity=0.239 Sum_probs=126.5
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe----------
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 276 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~---------- 276 (815)
+++++-+|+++.|++..++.|+.++... ..+..+||+||+||||||+|+.+|+.++..
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~ 77 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNE 77 (484)
T ss_pred HHhCCCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCC
Confidence 4678889999999999999998887631 124458999999999999999999988642
Q ss_pred --------------EEEEechhhhhhhhchhHHHHHHHHHHHH----hcCCcEEEecccccccCCCCCchhHHHHHHHHH
Q 003503 277 --------------FFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 338 (815)
Q Consensus 277 --------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 338 (815)
++.+++.. ......++.+.+.+. .....|+||||+|.+.. ...+.
T Consensus 78 C~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~-----------~A~NA 140 (484)
T PRK14956 78 CTSCLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD-----------QSFNA 140 (484)
T ss_pred CcHHHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH-----------HHHHH
Confidence 22222211 111233444444332 34456999999998842 34567
Q ss_pred HHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhhHHHhhcCCC
Q 003503 339 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 417 (815)
Q Consensus 339 Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~ 417 (815)
|+..++. ....+++|.+|+.++.+.+++++ |+ ..+.+..++..+-.+.++..+....+. ++..+..++....|-
T Consensus 141 LLKtLEE--Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd 215 (484)
T PRK14956 141 LLKTLEE--PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGS 215 (484)
T ss_pred HHHHhhc--CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCh
Confidence 7777764 33578888888889999999988 66 457788888777777777665544332 334567777777765
Q ss_pred cHHHHHHHHH
Q 003503 418 VGSDLAALCT 427 (815)
Q Consensus 418 ~~~dl~~l~~ 427 (815)
. ++...++.
T Consensus 216 ~-RdAL~lLe 224 (484)
T PRK14956 216 V-RDMLSFME 224 (484)
T ss_pred H-HHHHHHHH
Confidence 3 34333433
No 151
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=9.7e-12 Score=143.95 Aligned_cols=188 Identities=18% Similarity=0.302 Sum_probs=133.2
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCC--------------
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-------------- 548 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~-------------- 548 (815)
..-+|++++|++.+.+.|+..+... +.+..+||+||+|||||++|+++|+.+..
T Consensus 11 RP~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC 78 (618)
T PRK14951 11 RPRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC 78 (618)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC
Confidence 3467999999999999888776531 23455899999999999999999988753
Q ss_pred ---------------cEEEEeccchhhhccCccHHHHHHHHHHHhhC----CCeEEEEecchhhhhccCCCCCCCCchHH
Q 003503 549 ---------------NFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSTGDAGGAAD 609 (815)
Q Consensus 549 ---------------~~i~v~~~~l~~~~~g~se~~i~~~F~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~ 609 (815)
.++.+++.. ...-..++++.+.+... ...|++|||+|.+. .
T Consensus 79 g~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls--------------~ 138 (618)
T PRK14951 79 GVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT--------------N 138 (618)
T ss_pred CccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC--------------H
Confidence 122232211 11234566766665432 35799999999983 2
Q ss_pred HHHHHHHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHH
Q 003503 610 RVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALAR 688 (815)
Q Consensus 610 ~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~ 688 (815)
...|.||..|+.. ...+.+|.+|+.++.+.+.+++ |+ .++.|..++.++..+.++..+.+.++.-+ ..+..|++
T Consensus 139 ~a~NaLLKtLEEP--P~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~ 213 (618)
T PRK14951 139 TAFNAMLKTLEEP--PEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLAR 213 (618)
T ss_pred HHHHHHHHhcccC--CCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3467888888853 3456666677778888888887 77 68999999999999999988877666533 23677777
Q ss_pred HcCCCCHHHHHHHHHHHHHH
Q 003503 689 YTHGFSGADITEVCQRACKY 708 (815)
Q Consensus 689 ~t~g~sg~di~~l~~~a~~~ 708 (815)
.+.| +.+++.+++..+...
T Consensus 214 ~s~G-slR~al~lLdq~ia~ 232 (618)
T PRK14951 214 AARG-SMRDALSLTDQAIAF 232 (618)
T ss_pred HcCC-CHHHHHHHHHHHHHh
Confidence 7664 777777777655543
No 152
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=2.1e-11 Score=140.66 Aligned_cols=186 Identities=16% Similarity=0.230 Sum_probs=128.2
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe----------
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 276 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~---------- 276 (815)
+++++-+|++|.|++..++.|+.++... ..+..+||+||+|+||||++++|++.++..
T Consensus 8 rKYRPqtFdEVIGQe~Vv~~L~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~ 75 (830)
T PRK07003 8 RKWRPKDFASLVGQEHVVRALTHALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGV 75 (830)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcc
Confidence 4678889999999999999998887631 224568999999999999999999988642
Q ss_pred --------------EEEEechhhhhhhhchhHHHHHHHHHHHH----hcCCcEEEecccccccCCCCCchhHHHHHHHHH
Q 003503 277 --------------FFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 338 (815)
Q Consensus 277 --------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 338 (815)
++.++..+ ...-..++.+++... .....|+||||+|.|.. ...+.
T Consensus 76 C~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-----------~A~NA 138 (830)
T PRK07003 76 CRACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-----------HAFNA 138 (830)
T ss_pred cHHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH-----------HHHHH
Confidence 22222211 112234555555543 23446999999998842 23466
Q ss_pred HHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhhHHHhhcCCC
Q 003503 339 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 417 (815)
Q Consensus 339 Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~ 417 (815)
|+..|+.. ...+.+|.+||.++.|.+.+++ |+ ..+.|..+..++-.+.|+..+....+. ++..+..+++...|-
T Consensus 139 LLKtLEEP--P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gs 213 (830)
T PRK07003 139 MLKTLEEP--PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGS 213 (830)
T ss_pred HHHHHHhc--CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 77777653 3367778888999999999988 66 668899988888888887766543332 334567777777775
Q ss_pred cHHHHHHHHH
Q 003503 418 VGSDLAALCT 427 (815)
Q Consensus 418 ~~~dl~~l~~ 427 (815)
.. +...++.
T Consensus 214 mR-dALsLLd 222 (830)
T PRK07003 214 MR-DALSLTD 222 (830)
T ss_pred HH-HHHHHHH
Confidence 43 3333433
No 153
>PLN03025 replication factor C subunit; Provisional
Probab=99.35 E-value=1.2e-11 Score=134.75 Aligned_cols=181 Identities=18% Similarity=0.223 Sum_probs=119.9
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhC-----CcEEEEeccc
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPE 557 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~-----~~~i~v~~~~ 557 (815)
.+-+++++.|.+++.+.|+..+.. ....+++|+||||||||++|+++|+++. ..++.++.++
T Consensus 8 rP~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd 74 (319)
T PLN03025 8 RPTKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD 74 (319)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc
Confidence 345788999999988888765432 1123599999999999999999999872 2466676665
Q ss_pred hhhhccCccHHHHHHHHH---HHh----hCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEE
Q 003503 558 LLTMWFGESEANVREIFD---KAR----QSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFI 630 (815)
Q Consensus 558 l~~~~~g~se~~i~~~F~---~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~v 630 (815)
..+. ..++...+ ... ...+.|++|||+|.+... ..+.|+..|+... ....+
T Consensus 75 ~~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~--------------aq~aL~~~lE~~~--~~t~~ 132 (319)
T PLN03025 75 DRGI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG--------------AQQALRRTMEIYS--NTTRF 132 (319)
T ss_pred cccH------HHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH--------------HHHHHHHHHhccc--CCceE
Confidence 4221 12333222 111 123579999999998421 2345566665433 23445
Q ss_pred EEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHH
Q 003503 631 IGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEVCQRA 705 (815)
Q Consensus 631 i~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~t~g~sg~di~~l~~~a 705 (815)
|.+||.++.+.+++.+ |+ ..+.|++|+.++....++..+++.++. .+..+..+++... +|++.+++..
T Consensus 133 il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~----gDlR~aln~L 201 (319)
T PLN03025 133 ALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTAD----GDMRQALNNL 201 (319)
T ss_pred EEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CCHHHHHHHH
Confidence 6677888888888887 77 489999999999999999888776544 2234666666544 3555544443
No 154
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=7.8e-12 Score=141.13 Aligned_cols=164 Identities=24% Similarity=0.355 Sum_probs=125.9
Q ss_pred ccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEec------hhhhh-
Q 003503 215 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLING------PEIMS- 287 (815)
Q Consensus 215 ~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~------~~l~~- 287 (815)
.|=-|+++.+++|.|++...... .-..+.-++|+||||+|||+|++.||+.++..|+.+.- +++.+
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~-------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLT-------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHh-------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 34579999999999988752222 12345679999999999999999999999999988764 34433
Q ss_pred --hhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhccc-------------CCCcE
Q 003503 288 --KLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK-------------SRAHV 352 (815)
Q Consensus 288 --~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-------------~~~~v 352 (815)
.|.|....++-+-+..+....| ++++||||.+...-...+. ++|+..+|--+ .-..|
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDPa-------SALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDPA-------SALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCChH-------HHHHhhcCHhhcCchhhccccCccchhhe
Confidence 5778888888888888877777 8899999999766433222 34555554322 12579
Q ss_pred EEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHh
Q 003503 353 IVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHT 396 (815)
Q Consensus 353 ivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~ 396 (815)
++|+|.|..+.|+..|+. |+ ..|++.-++..+..+|.+.|+
T Consensus 468 mFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 468 MFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhc
Confidence 999999999999999986 76 568999999999999999774
No 155
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.35 E-value=2.1e-11 Score=139.38 Aligned_cols=188 Identities=21% Similarity=0.288 Sum_probs=132.3
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCC--------------
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-------------- 548 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~-------------- 548 (815)
.+.+|+++.|++.+++.|...+.. + ..+.++||+||+|+|||++|+++|..+.+
T Consensus 11 RP~~F~dIIGQe~iv~~L~~aI~~-----------~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~s 78 (605)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILN-----------N-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSV 78 (605)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 456789999999999988776532 1 23467999999999999999999998642
Q ss_pred ----------cEEEEeccchhhhccCccHHHHHHHHHHHhhC----CCeEEEEecchhhhhccCCCCCCCCchHHHHHHH
Q 003503 549 ----------NFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQ 614 (815)
Q Consensus 549 ----------~~i~v~~~~l~~~~~g~se~~i~~~F~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~ 614 (815)
.++.+++... -.-..++.+.+.+... ...|++|||+|.+-. ...+.
T Consensus 79 Cr~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~--------------~A~Na 138 (605)
T PRK05896 79 CESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST--------------SAWNA 138 (605)
T ss_pred HHHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH--------------HHHHH
Confidence 2333333211 1233466666655433 246999999998731 24577
Q ss_pred HHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcCCC
Q 003503 615 LLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGF 693 (815)
Q Consensus 615 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~t~g~ 693 (815)
||..|+.. ...+++|.+|+.+..|.+.+++ |+. ++.|++|+..+....++..+.+.++. ++..+..+++.+.|
T Consensus 139 LLKtLEEP--p~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G- 212 (605)
T PRK05896 139 LLKTLEEP--PKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG- 212 (605)
T ss_pred HHHHHHhC--CCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 88888853 3457777778888999999987 875 79999999999999999888766543 22346677776654
Q ss_pred CHHHHHHHHHHHHHH
Q 003503 694 SGADITEVCQRACKY 708 (815)
Q Consensus 694 sg~di~~l~~~a~~~ 708 (815)
+.+++.+++..+...
T Consensus 213 dlR~AlnlLekL~~y 227 (605)
T PRK05896 213 SLRDGLSILDQLSTF 227 (605)
T ss_pred cHHHHHHHHHHHHhh
Confidence 666666666664443
No 156
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=9.9e-12 Score=142.14 Aligned_cols=186 Identities=22% Similarity=0.262 Sum_probs=127.8
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCC--------------
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-------------- 548 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~-------------- 548 (815)
...+|+++.|++.+++.|...+... ..+..+||+||+|+|||++|+++|..+..
T Consensus 11 RP~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~s 78 (546)
T PRK14957 11 RPQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCEN 78 (546)
T ss_pred CcCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 3467899999999998887766431 23445899999999999999999997653
Q ss_pred ----------cEEEEeccchhhhccCccHHHHHHHHHHHh----hCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHH
Q 003503 549 ----------NFISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQ 614 (815)
Q Consensus 549 ----------~~i~v~~~~l~~~~~g~se~~i~~~F~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~ 614 (815)
.++.+++..- . .-..++.+.+.+. .....|+||||+|.+. ....+.
T Consensus 79 C~~i~~~~~~dlieidaas~----~--gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls--------------~~a~na 138 (546)
T PRK14957 79 CVAINNNSFIDLIEIDAASR----T--GVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS--------------KQSFNA 138 (546)
T ss_pred HHHHhcCCCCceEEeecccc----c--CHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc--------------HHHHHH
Confidence 2333333211 1 1233455555443 2345799999999873 235678
Q ss_pred HHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHcCCC
Q 003503 615 LLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGF 693 (815)
Q Consensus 615 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~t~g~ 693 (815)
||..|+.. .+.+++|++|+.+..+-+.+++ |+ ..++|.+++.++..+.++..+++.++.-+ ..+..+++.+. -
T Consensus 139 LLK~LEep--p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~-G 212 (546)
T PRK14957 139 LLKTLEEP--PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAK-G 212 (546)
T ss_pred HHHHHhcC--CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-C
Confidence 88888853 3455566666667777777776 77 68999999999999889888877665433 23566666654 4
Q ss_pred CHHHHHHHHHHHH
Q 003503 694 SGADITEVCQRAC 706 (815)
Q Consensus 694 sg~di~~l~~~a~ 706 (815)
+.+++.+++..++
T Consensus 213 dlR~alnlLek~i 225 (546)
T PRK14957 213 SLRDALSLLDQAI 225 (546)
T ss_pred CHHHHHHHHHHHH
Confidence 6666666666544
No 157
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=1.4e-11 Score=140.47 Aligned_cols=187 Identities=16% Similarity=0.233 Sum_probs=127.7
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe----------
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 276 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~---------- 276 (815)
.++.+-+|++|.|++..++.|++++... ..+..+||+||+|+||||+++.|++.++..
T Consensus 8 rKYRPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~ 75 (700)
T PRK12323 8 RKWRPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITA 75 (700)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCC
Confidence 4678889999999999999998888641 224568999999999999999999988651
Q ss_pred -------------------EEEEechhhhhhhhchhHHHHHHHHHHHH----hcCCcEEEecccccccCCCCCchhHHHH
Q 003503 277 -------------------FFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVER 333 (815)
Q Consensus 277 -------------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~ 333 (815)
++.+++.. ...-..++.+++... .....|+||||+|.+..
T Consensus 76 ~PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~----------- 138 (700)
T PRK12323 76 QPCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN----------- 138 (700)
T ss_pred CCCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH-----------
Confidence 12222210 112234555555432 34456999999998842
Q ss_pred HHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcccc-chhhhHHHh
Q 003503 334 RIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAE-DVDLERVAK 412 (815)
Q Consensus 334 ~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~-~~~l~~la~ 412 (815)
...+.|+..|+.- ..++++|.+|+.++.|.+.+++ |+ ..+.|..++.++..+.|+..+....+.. +..+..++.
T Consensus 139 ~AaNALLKTLEEP--P~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~ 213 (700)
T PRK12323 139 HAFNAMLKTLEEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQ 213 (700)
T ss_pred HHHHHHHHhhccC--CCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 2456677777653 3467778888999999999998 65 5678999998888887776654433332 233566677
Q ss_pred hcCCCcHHHHHHHHHH
Q 003503 413 DTHGYVGSDLAALCTE 428 (815)
Q Consensus 413 ~t~g~~~~dl~~l~~~ 428 (815)
...|-. ++...++..
T Consensus 214 ~A~Gs~-RdALsLLdQ 228 (700)
T PRK12323 214 AAQGSM-RDALSLTDQ 228 (700)
T ss_pred HcCCCH-HHHHHHHHH
Confidence 766644 344444443
No 158
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.35 E-value=7.3e-11 Score=138.59 Aligned_cols=224 Identities=24% Similarity=0.363 Sum_probs=135.0
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHh----------CCcEEE
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFIS 552 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~----------~~~~i~ 552 (815)
..-+|+++.|.+...+.+...+.. ..+.+++|+|||||||||+|+++++.. +.+|+.
T Consensus 149 rp~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 149 RPRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred CcCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 355788899988877766544321 223469999999999999999998776 346899
Q ss_pred Eeccchh-------hhccCccHHH----HHHHHHH----------HhhCCCeEEEEecchhhhhccCCCCCCCCchHHHH
Q 003503 553 VKGPELL-------TMWFGESEAN----VREIFDK----------ARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRV 611 (815)
Q Consensus 553 v~~~~l~-------~~~~g~se~~----i~~~F~~----------a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v 611 (815)
+++..+. ..+.|..... .+..+.. .......+||+||++.|-.. .
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~--------------~ 281 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL--------------L 281 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH--------------H
Confidence 9887642 1122221111 1111110 01122359999999887321 2
Q ss_pred HHHHHhccccC--------------------------CCCCcEEEEEe-cCCCCCCCccccCCCCCcceeeccCCCHHHH
Q 003503 612 LNQLLTEMDGM--------------------------NAKKTVFIIGA-TNRPDIIDPALLRPGRLDQLIYIPLPDEASR 664 (815)
Q Consensus 612 l~~lL~~ld~~--------------------------~~~~~v~vi~a-Tn~~~~ld~allr~gRf~~~i~~~~p~~~~r 664 (815)
...|+..|+.- .....+++|++ |+.++.+++++.+ ||. .++|++++.+++
T Consensus 282 Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi 358 (615)
T TIGR02903 282 QNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDI 358 (615)
T ss_pred HHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHH
Confidence 23333333221 01123555554 5668889999887 987 678999999999
Q ss_pred HHHHHHHhccCCCCC-cccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccccccccccc
Q 003503 665 LQIFKACLRKSPISP-DVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIERERRKRENPEAMEEDEVDDVAEIK 743 (815)
Q Consensus 665 ~~Il~~~l~~~~~~~-~~~~~~la~~t~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 743 (815)
..|++..+.+.++.- +.-+..|++.+ +.|+...+++..+...++.+..... .......|+
T Consensus 359 ~~Il~~~a~~~~v~ls~eal~~L~~ys--~~gRraln~L~~~~~~~~~~~~~~~-----------------~~~~~~~I~ 419 (615)
T TIGR02903 359 ALIVLNAAEKINVHLAAGVEELIARYT--IEGRKAVNILADVYGYALYRAAEAG-----------------KENDKVTIT 419 (615)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHCC--CcHHHHHHHHHHHHHHHHHHHHHhc-----------------cCCCCeeEC
Confidence 999999988765432 22234455443 3566666666666555444331100 001124789
Q ss_pred HHHHHHHHhhcc
Q 003503 744 AVHFEESMKYAR 755 (815)
Q Consensus 744 ~~~f~~a~~~~~ 755 (815)
.+|++++++.-+
T Consensus 420 ~edv~~~l~~~r 431 (615)
T TIGR02903 420 QDDVYEVIQISR 431 (615)
T ss_pred HHHHHHHhCCCc
Confidence 999999987653
No 159
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=1.3e-11 Score=142.37 Aligned_cols=188 Identities=24% Similarity=0.310 Sum_probs=133.0
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCc-------------
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------------- 549 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~------------- 549 (815)
...+|++|.|++.+++.|...+... ..+..+||+||+|+|||++|+++|..+...
T Consensus 11 rP~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~ 78 (527)
T PRK14969 11 RPKSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSA 78 (527)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 3457999999999999888776531 234568999999999999999999987542
Q ss_pred -----------EEEEeccchhhhccCccHHHHHHHHHHHhhC----CCeEEEEecchhhhhccCCCCCCCCchHHHHHHH
Q 003503 550 -----------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQ 614 (815)
Q Consensus 550 -----------~i~v~~~~l~~~~~g~se~~i~~~F~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~ 614 (815)
++.+++.. ......++++.+.+... ...|+||||+|.+. ....|.
T Consensus 79 C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls--------------~~a~na 138 (527)
T PRK14969 79 CLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS--------------KSAFNA 138 (527)
T ss_pred HHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC--------------HHHHHH
Confidence 22222211 11234577777766432 34699999999873 235678
Q ss_pred HHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHcCCC
Q 003503 615 LLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGF 693 (815)
Q Consensus 615 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~t~g~ 693 (815)
||..|+.. .+.+++|.+|+.++.+.+.+++ |+ ..++|.+++.++..+.++..+++.++..+ ..+..+++.+. .
T Consensus 139 LLK~LEep--p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~-G 212 (527)
T PRK14969 139 MLKTLEEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAA-G 212 (527)
T ss_pred HHHHHhCC--CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-C
Confidence 88888863 3456666777777777777776 77 68999999999999888888876665433 23566676655 4
Q ss_pred CHHHHHHHHHHHHHH
Q 003503 694 SGADITEVCQRACKY 708 (815)
Q Consensus 694 sg~di~~l~~~a~~~ 708 (815)
+.+++.+++..+..+
T Consensus 213 slr~al~lldqai~~ 227 (527)
T PRK14969 213 SMRDALSLLDQAIAY 227 (527)
T ss_pred CHHHHHHHHHHHHHh
Confidence 777777777766544
No 160
>PRK04195 replication factor C large subunit; Provisional
Probab=99.34 E-value=2.7e-11 Score=139.37 Aligned_cols=182 Identities=28% Similarity=0.400 Sum_probs=126.4
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM 286 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~ 286 (815)
+++.+.+++++.|.++.++.+++++..... | .++.++||+|||||||||+|+++|++++..++.+++++..
T Consensus 6 eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r 76 (482)
T PRK04195 6 EKYRPKTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQR 76 (482)
T ss_pred hhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccc
Confidence 467788999999999999999998864211 1 2367899999999999999999999999999999886643
Q ss_pred hhhhchhHHHHHHHHHHHHh------cCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCC
Q 003503 287 SKLAGESESNLRKAFEEAEK------NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNR 360 (815)
Q Consensus 287 ~~~~g~~~~~l~~vf~~a~~------~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~ 360 (815)
.. ..++.+...+.. ..+.+|+|||+|.+..+.. ......|+..+.. ....+|.++|.
T Consensus 77 ~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d-------~~~~~aL~~~l~~----~~~~iIli~n~ 139 (482)
T PRK04195 77 TA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED-------RGGARAILELIKK----AKQPIILTAND 139 (482)
T ss_pred cH------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc-------hhHHHHHHHHHHc----CCCCEEEeccC
Confidence 21 122333222221 2467999999999865321 1233556666652 22334456788
Q ss_pred CCCCCH-HhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhhHHHhhcCCC
Q 003503 361 PNSIDP-ALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 417 (815)
Q Consensus 361 ~~~ld~-al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~ 417 (815)
+..+.+ .+++ ....+.++.|+..+...+++..+....+. ++..+..++..+.|-
T Consensus 140 ~~~~~~k~Lrs---r~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GD 195 (482)
T PRK04195 140 PYDPSLRELRN---ACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGD 195 (482)
T ss_pred ccccchhhHhc---cceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 877776 6665 34678999999999999998776544432 234577787776653
No 161
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.34 E-value=2.1e-11 Score=123.50 Aligned_cols=190 Identities=25% Similarity=0.378 Sum_probs=129.0
Q ss_pred cCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHh---CCcEEEEeccch
Q 003503 482 VPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPEL 558 (815)
Q Consensus 482 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~---~~~~i~v~~~~l 558 (815)
...+.++++.|++..|+.|.+..... .. | .+..++||+|+.|||||+++|++..+. +..+|.|...++
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~~F-------l~-G-~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L 91 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTEQF-------LQ-G-LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL 91 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHH-------Hc-C-CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence 45788999999999999987665432 22 2 356779999999999999999999886 456788877666
Q ss_pred hhhccCccHHHHHHHHHHHhhC-CCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCC--CCCcEEEEEecC
Q 003503 559 LTMWFGESEANVREIFDKARQS-APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN--AKKTVFIIGATN 635 (815)
Q Consensus 559 ~~~~~g~se~~i~~~F~~a~~~-~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~--~~~~v~vi~aTn 635 (815)
.. +..+++..+.. ..-|||+|++..= ..... ...|-..|||.- ..++|+|.+|+|
T Consensus 92 ~~---------l~~l~~~l~~~~~kFIlf~DDLsFe----------~~d~~---yk~LKs~LeGgle~~P~NvliyATSN 149 (249)
T PF05673_consen 92 GD---------LPELLDLLRDRPYKFILFCDDLSFE----------EGDTE---YKALKSVLEGGLEARPDNVLIYATSN 149 (249)
T ss_pred cc---------HHHHHHHHhcCCCCEEEEecCCCCC----------CCcHH---HHHHHHHhcCccccCCCcEEEEEecc
Confidence 32 44455554422 3469999996531 11122 245555567653 357899999999
Q ss_pred CCCCCCcc----------ccCC-----------CCCcceeeccCCCHHHHHHHHHHHhccCCCCCcc-cHHH----HHHH
Q 003503 636 RPDIIDPA----------LLRP-----------GRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSA----LARY 689 (815)
Q Consensus 636 ~~~~ld~a----------llr~-----------gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-~~~~----la~~ 689 (815)
|...+... -++| .||..+|.|.+|+.++..+|.+.++.+.++.-+. ++.. .|..
T Consensus 150 RRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~ 229 (249)
T PF05673_consen 150 RRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALR 229 (249)
T ss_pred hhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 86544221 1222 3999999999999999999999999888776442 2221 2223
Q ss_pred cCCCCHHHHHHHH
Q 003503 690 THGFSGADITEVC 702 (815)
Q Consensus 690 t~g~sg~di~~l~ 702 (815)
-.|.||+--.+.+
T Consensus 230 rg~RSGRtA~QF~ 242 (249)
T PF05673_consen 230 RGGRSGRTARQFI 242 (249)
T ss_pred cCCCCHHHHHHHH
Confidence 4556665544433
No 162
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=3.2e-11 Score=140.59 Aligned_cols=194 Identities=22% Similarity=0.301 Sum_probs=134.8
Q ss_pred cCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEE--------
Q 003503 482 VPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISV-------- 553 (815)
Q Consensus 482 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v-------- 553 (815)
..+.+|++|.|++.+++.|+..+... ..+..+||+||+|+|||++|+++|..+.+.--..
T Consensus 12 yRP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C 79 (725)
T PRK07133 12 YRPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQEC 79 (725)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHH
Confidence 34678999999999999888776531 2345689999999999999999998875321000
Q ss_pred -----eccchhhh--ccCccHHHHHHHHHHHhhC----CCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccC
Q 003503 554 -----KGPELLTM--WFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGM 622 (815)
Q Consensus 554 -----~~~~l~~~--~~g~se~~i~~~F~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~ 622 (815)
..++++.. ....+...++.+.+.+... ...|++|||+|.+. ....+.||..|+..
T Consensus 80 ~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT--------------~~A~NALLKtLEEP 145 (725)
T PRK07133 80 IENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS--------------KSAFNALLKTLEEP 145 (725)
T ss_pred HHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC--------------HHHHHHHHHHhhcC
Confidence 00111100 0001244577777776543 35799999999873 23578888888853
Q ss_pred CCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHHcCCCCHHHHHHH
Q 003503 623 NAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSALARYTHGFSGADITEV 701 (815)
Q Consensus 623 ~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-~~~~la~~t~g~sg~di~~l 701 (815)
...+++|.+|+.++.|.+.+++ |+. ++.|.+++.++...+++..+.+.++.-+. .+..+|..+. .+.+++..+
T Consensus 146 --P~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~-GslR~Alsl 219 (725)
T PRK07133 146 --PKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSS-GSLRDALSI 219 (725)
T ss_pred --CCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHHHH
Confidence 4467777788888999999887 885 89999999999999999888776654332 2566777665 366666666
Q ss_pred HHHHHH
Q 003503 702 CQRACK 707 (815)
Q Consensus 702 ~~~a~~ 707 (815)
+..+..
T Consensus 220 Lekl~~ 225 (725)
T PRK07133 220 AEQVSI 225 (725)
T ss_pred HHHHHH
Confidence 665543
No 163
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.34 E-value=1.1e-11 Score=140.44 Aligned_cols=172 Identities=17% Similarity=0.272 Sum_probs=115.9
Q ss_pred cceEEeCCCCCChhHHHHHHHHHh-----CCcEEEEeccchhhhccCccHH---HHHHHHHHHhhCCCeEEEEecchhhh
Q 003503 523 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEA---NVREIFDKARQSAPCVLFFDELDSIA 594 (815)
Q Consensus 523 ~gilL~GppGtGKT~lakala~~~-----~~~~i~v~~~~l~~~~~g~se~---~i~~~F~~a~~~~p~ilfiDEid~l~ 594 (815)
.+++|||++|||||+|++++++++ +..++.+++.++...+...... .+....+..+ .+.+|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~--~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEIC--QNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhc--cCCEEEEecccccc
Confidence 469999999999999999999865 3567889988887765533221 2222222222 35699999999885
Q ss_pred hccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCC---CCccccCCCCCc--ceeeccCCCHHHHHHHHH
Q 003503 595 TQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEASRLQIFK 669 (815)
Q Consensus 595 ~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~---ld~allr~gRf~--~~i~~~~p~~~~r~~Il~ 669 (815)
.+ ......|...++.....++.+||++...|+. +++.+.+ ||. .++.+.+|+.++|.+|++
T Consensus 220 ~k------------~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 220 YK------------EKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred CC------------HHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHH
Confidence 32 1123334444444433445556655555544 5677877 774 777899999999999999
Q ss_pred HHhccCCC---CCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 003503 670 ACLRKSPI---SPDVDLSALARYTHGFSGADITEVCQRACKYAIR 711 (815)
Q Consensus 670 ~~l~~~~~---~~~~~~~~la~~t~g~sg~di~~l~~~a~~~a~~ 711 (815)
..++..++ -++.-+..|+....| +.+.+.++|.++...+..
T Consensus 286 ~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~ 329 (450)
T PRK14087 286 KEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQ 329 (450)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhc
Confidence 99976543 122235667776664 788999999888766554
No 164
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.34 E-value=1.2e-11 Score=137.20 Aligned_cols=188 Identities=24% Similarity=0.369 Sum_probs=133.2
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCC--------------
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-------------- 548 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~-------------- 548 (815)
....|+++.|.+.+++.|.+.+.. + ..+..+||+||||+|||++|++++..+..
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~-----------~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~ 76 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKN-----------G-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECES 76 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 457899999999999988876542 1 23456899999999999999999988642
Q ss_pred ----------cEEEEeccchhhhccCccHHHHHHHHHHHhhCC----CeEEEEecchhhhhccCCCCCCCCchHHHHHHH
Q 003503 549 ----------NFISVKGPELLTMWFGESEANVREIFDKARQSA----PCVLFFDELDSIATQRGSSTGDAGGAADRVLNQ 614 (815)
Q Consensus 549 ----------~~i~v~~~~l~~~~~g~se~~i~~~F~~a~~~~----p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~ 614 (815)
+++.+++.+ ......++.+++.+...+ ..|+++||+|.+. ....+.
T Consensus 77 c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~--------------~~~~~~ 136 (355)
T TIGR02397 77 CKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS--------------KSAFNA 136 (355)
T ss_pred HHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC--------------HHHHHH
Confidence 233343321 123345777887765432 3699999999873 234677
Q ss_pred HHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHcCCC
Q 003503 615 LLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGF 693 (815)
Q Consensus 615 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~t~g~ 693 (815)
||..++.. ...+++|.+||.++.+.+++.+ |+ ..+.|++|+.++..++++..+++.++.-+ ..+..+++...|
T Consensus 137 Ll~~le~~--~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g- 210 (355)
T TIGR02397 137 LLKTLEEP--PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG- 210 (355)
T ss_pred HHHHHhCC--ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 88888753 3456777778888888888887 77 47899999999999999998877665422 335666766654
Q ss_pred CHHHHHHHHHHHHHH
Q 003503 694 SGADITEVCQRACKY 708 (815)
Q Consensus 694 sg~di~~l~~~a~~~ 708 (815)
+.+.+.+.+..+...
T Consensus 211 ~~~~a~~~lekl~~~ 225 (355)
T TIGR02397 211 SLRDALSLLDQLISF 225 (355)
T ss_pred ChHHHHHHHHHHHhh
Confidence 666666666655543
No 165
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.33 E-value=1.6e-11 Score=127.22 Aligned_cols=165 Identities=16% Similarity=0.239 Sum_probs=108.1
Q ss_pred CcceEEeCCCCCChhHHHHHHHHHhC---CcEEEEeccchhhhccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccC
Q 003503 522 SKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRG 598 (815)
Q Consensus 522 ~~gilL~GppGtGKT~lakala~~~~---~~~i~v~~~~l~~~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~ 598 (815)
..+++|+||+|||||++|++++..+. .+++.+++.++.... ..++..... ..+|+|||++.+....
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~--~~lLvIDdi~~l~~~~- 106 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEGLEQ--ADLVCLDDVEAIAGQP- 106 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhhccc--CCEEEEeChhhhcCCh-
Confidence 45799999999999999999998863 578888887775422 233333322 3599999999974210
Q ss_pred CCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCCCC---ccccCCCCC--cceeeccCCCHHHHHHHHHHHhc
Q 003503 599 SSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIID---PALLRPGRL--DQLIYIPLPDEASRLQIFKACLR 673 (815)
Q Consensus 599 ~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld---~allr~gRf--~~~i~~~~p~~~~r~~Il~~~l~ 673 (815)
...+.+-.++..+ ...+..+|+.++..+..++ +.+.+ || ...+.+|+|+.+++..+++..+.
T Consensus 107 --------~~~~~L~~~l~~~---~~~~~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~ 173 (226)
T TIGR03420 107 --------EWQEALFHLYNRV---REAGGRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAA 173 (226)
T ss_pred --------HHHHHHHHHHHHH---HHcCCeEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHH
Confidence 1122233333332 2223345555554554433 66665 65 57899999999999999998876
Q ss_pred cCCCCC-cccHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 003503 674 KSPISP-DVDLSALARYTHGFSGADITEVCQRACKYAIR 711 (815)
Q Consensus 674 ~~~~~~-~~~~~~la~~t~g~sg~di~~l~~~a~~~a~~ 711 (815)
+.++.- +.-+..|+.. -+-+.+++.++++++...+..
T Consensus 174 ~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~~ 211 (226)
T TIGR03420 174 RRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASLA 211 (226)
T ss_pred HcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHH
Confidence 554432 2235667774 456788999999887765544
No 166
>PF02359 CDC48_N: Cell division protein 48 (CDC48), N-terminal domain; InterPro: IPR003338 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The VAT protein of the archaebacterium Thermoplasma acidophilum, like all other members of the Cdc48/p97 family of AAA ATPases, has two ATPase domains and a 185-residue amino-terminal substrate-recognition domain, VAT-N. VAT shows activity in protein folding and unfolding and thus shares the common function of these ATPases in disassembly and/or degradation of protein complexes. VAT-N is composed of two equally sized subdomains. The amino-terminal subdomain VAT-Nn forms a double-psi beta-barrel whose pseudo-twofold symmetry is mirrored by an internal sequence repeat of 42 residues. The carboxy-terminal subdomain VAT-Nc forms a novel six-stranded beta-clam fold []. Together, VAT-Nn and VAT-Nc form a kidney-shaped structure, in close agreement with results from electron microscopy. VAT-Nn is related to numerous proteins including prokaryotic transcription factors, metabolic enzymes, the protease cofactors UFD1 and PrlF, and aspartic proteinases. ; GO: 0005524 ATP binding; PDB: 1CZ4_A 1CZ5_A 3CF3_C 3CF1_A 3CF2_A 1S3S_D 1E32_A 1R7R_A 2PJH_B 1CR5_B ....
Probab=99.33 E-value=5.9e-12 Score=109.19 Aligned_cols=80 Identities=39% Similarity=0.620 Sum_probs=66.4
Q ss_pred eEEEccccCC---CccEEEeCHHHHHhcCCCCCCEEEEecCCCceEEEEEEecCCC--CCCeEEecHHhhhhcccccCCe
Q 003503 37 RLVVDEAIND---DNSVITMHPNTMEKLQFFRGDTVLVKGKKRKDTVCVVLSDELC--EASKVRVNKVVRSNLRVRLGDV 111 (815)
Q Consensus 37 ~~~v~~~~~~---~~~~v~~~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~r~~~~~~~g~~ 111 (815)
+|+|.++..+ ++++|+|||+.|++||+..||+|.|.|. + .++|.||+.... +++.|+|+..+|+|+++++||.
T Consensus 1 ~L~V~~~p~~~~~~~n~v~v~~~~m~~l~l~~gd~v~i~g~-~-~tv~~v~~~~~~~~~~g~I~l~~~~R~n~~v~igd~ 78 (87)
T PF02359_consen 1 RLRVAEAPSDEDAGTNCVRVSPEDMEELGLFPGDVVLISGK-R-KTVAFVFPDRPDDSPPGVIRLSGIQRKNAGVSIGDR 78 (87)
T ss_dssp EEEEEE-SSSHHHCTTEEEEEHHHHHCTTT-TTEEEEEETT-T-EEEEEEEEECCSTTCTTEEEE-HHHHHHCT--TTSE
T ss_pred CcEEEeCCChHhCCCCEEEEcHHHHHHcCCCCccEEEEeCC-c-eEEEEEEECCCCCCCCCEEEECHHHHhhCCcCCCCE
Confidence 5788888743 8999999999999999999999999994 3 489999987544 7899999999999999999999
Q ss_pred eEEEecC
Q 003503 112 VSVHPCP 118 (815)
Q Consensus 112 v~v~~~~ 118 (815)
|+|+++.
T Consensus 79 V~V~~~~ 85 (87)
T PF02359_consen 79 VTVRPYD 85 (87)
T ss_dssp EEEEEET
T ss_pred EEEEECC
Confidence 9999975
No 167
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.33 E-value=8.3e-12 Score=136.24 Aligned_cols=157 Identities=22% Similarity=0.268 Sum_probs=107.4
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchhhhc
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 562 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~ 562 (815)
.+.+++++.|.+++++.+...+.. + ..+..++|+||||+|||++|+++++..+.+++.+++.+ ..
T Consensus 16 rP~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~- 80 (316)
T PHA02544 16 RPSTIDECILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR- 80 (316)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-
Confidence 345788999999999988877642 1 22345677999999999999999999998898888876 11
Q ss_pred cCccHHHHHHHHHHH-hhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCCCC
Q 003503 563 FGESEANVREIFDKA-RQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIID 641 (815)
Q Consensus 563 ~g~se~~i~~~F~~a-~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld 641 (815)
+......+....... -...+.++||||+|.+... ..... |...|+.. ..++.+|++||.++.+.
T Consensus 81 ~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~----------~~~~~---L~~~le~~--~~~~~~Ilt~n~~~~l~ 145 (316)
T PHA02544 81 IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA----------DAQRH---LRSFMEAY--SKNCSFIITANNKNGII 145 (316)
T ss_pred HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH----------HHHHH---HHHHHHhc--CCCceEEEEcCChhhch
Confidence 111111122211111 1134689999999987211 12223 33334433 24567888999999999
Q ss_pred ccccCCCCCcceeeccCCCHHHHHHHHHHHh
Q 003503 642 PALLRPGRLDQLIYIPLPDEASRLQIFKACL 672 (815)
Q Consensus 642 ~allr~gRf~~~i~~~~p~~~~r~~Il~~~l 672 (815)
+++.+ ||. .+.|+.|+.+++.++++..+
T Consensus 146 ~~l~s--R~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 146 EPLRS--RCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred HHHHh--hce-EEEeCCCCHHHHHHHHHHHH
Confidence 99998 885 78999999999988876543
No 168
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=4.5e-11 Score=135.56 Aligned_cols=177 Identities=18% Similarity=0.248 Sum_probs=121.2
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-----------
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA----------- 275 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~----------- 275 (815)
+++++-+|+++.|++..++.|+.++... ..+..+||+|||||||||+|+++|+.++.
T Consensus 6 ~kyRP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~ 73 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNE 73 (472)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcc
Confidence 4678889999999999988888776531 23456999999999999999999998764
Q ss_pred -------------eEEEEechhhhhhhhchhHHHHHHHHHHHHh----cCCcEEEecccccccCCCCCchhHHHHHHHHH
Q 003503 276 -------------FFFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 338 (815)
Q Consensus 276 -------------~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 338 (815)
.++.+++.. ...-..++.+.+.+.. ....++||||+|.+.. .....
T Consensus 74 c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~-----------~a~~~ 136 (472)
T PRK14962 74 CRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK-----------EAFNA 136 (472)
T ss_pred cHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH-----------HHHHH
Confidence 233443321 1112344555544332 3346999999998842 23455
Q ss_pred HHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcc-ccchhhhHHHhhcCCC
Q 003503 339 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AEDVDLERVAKDTHGY 417 (815)
Q Consensus 339 Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l-~~~~~l~~la~~t~g~ 417 (815)
|+..++... ..+++|++|+.+..+++++++ |+ ..+.+..++..+...+++..+....+ .++..+..++..+.|-
T Consensus 137 LLk~LE~p~--~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~Gd 211 (472)
T PRK14962 137 LLKTLEEPP--SHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGG 211 (472)
T ss_pred HHHHHHhCC--CcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCC
Confidence 666666432 356666677778889999987 66 47899999999988888876644332 2234467777766653
No 169
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.31 E-value=5.9e-11 Score=133.94 Aligned_cols=172 Identities=27% Similarity=0.453 Sum_probs=118.7
Q ss_pred cccCCCCcccccChHHHHHH---HHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEech
Q 003503 207 ERLNEVGYDDVGGVRKQMAQ---IRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGP 283 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~---i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~ 283 (815)
+++++-+++++.|.+..+.. +++++.. ....+++|+|||||||||+|+++++.++..++.+++.
T Consensus 4 ~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~ 70 (413)
T PRK13342 4 ERMRPKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAV 70 (413)
T ss_pred hhhCCCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecc
Confidence 35677889999999998766 7777653 2234799999999999999999999999999888874
Q ss_pred hhhhhhhchhHHHHHHHHHHHH----hcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecC
Q 003503 284 EIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATN 359 (815)
Q Consensus 284 ~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn 359 (815)
.. ....++.+++.+. .....+|||||+|.+... ....|+..++. ..+++|++|+
T Consensus 71 ~~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~-----------~q~~LL~~le~----~~iilI~att 128 (413)
T PRK13342 71 TS-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA-----------QQDALLPHVED----GTITLIGATT 128 (413)
T ss_pred cc-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH-----------HHHHHHHHhhc----CcEEEEEeCC
Confidence 32 1233445555442 235679999999987422 23445555542 4566666543
Q ss_pred --CCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCC-----ccccchhhhHHHhhcCCC
Q 003503 360 --RPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNM-----KLAEDVDLERVAKDTHGY 417 (815)
Q Consensus 360 --~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~-----~l~~~~~l~~la~~t~g~ 417 (815)
....+++++++ |+ ..+.+..++.++...+++..+... .+ .+..+..++..+.|.
T Consensus 129 ~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i-~~~al~~l~~~s~Gd 189 (413)
T PRK13342 129 ENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVEL-DDEALDALARLANGD 189 (413)
T ss_pred CChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCC-CHHHHHHHHHhCCCC
Confidence 34478899988 66 678899999999988888655431 22 233456666666553
No 170
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.31 E-value=5.6e-11 Score=131.70 Aligned_cols=185 Identities=19% Similarity=0.305 Sum_probs=124.4
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe----------------
Q 003503 213 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------------- 276 (815)
Q Consensus 213 ~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~---------------- 276 (815)
.|++|+|++..++.|++++..+..++. .++...+..+||+||+|+|||++|+++|+.+...
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~---~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVA---AAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccc---ccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 478999999999999999987544322 2333456789999999999999999999876432
Q ss_pred -------EEEEechhhhhhhhchhHHHHHHHHHHHHh----cCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhc
Q 003503 277 -------FFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDG 345 (815)
Q Consensus 277 -------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~ 345 (815)
+..+... + ..-.-..++.+++.+.. ....|+||||+|.+.+. ..+.|+..|+.
T Consensus 80 ~~~~hpD~~~i~~~---~--~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~-----------aanaLLk~LEe 143 (394)
T PRK07940 80 LAGTHPDVRVVAPE---G--LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER-----------AANALLKAVEE 143 (394)
T ss_pred hcCCCCCEEEeccc---c--ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH-----------HHHHHHHHhhc
Confidence 1111110 0 01123446777766543 33469999999988532 34667777775
Q ss_pred ccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhhHHHhhcCCCcHHHHHHH
Q 003503 346 LKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAAL 425 (815)
Q Consensus 346 ~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l 425 (815)
... ++++|.+|+.++.+.+++++ |+ ..+.++.|+.++..+.|... ..+. ......++..++|..+..+..+
T Consensus 144 p~~--~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~---~~~~-~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 144 PPP--RTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRR---DGVD-PETARRAARASQGHIGRARRLA 214 (394)
T ss_pred CCC--CCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHh---cCCC-HHHHHHHHHHcCCCHHHHHHHh
Confidence 432 34444455558999999998 65 67899999998887777532 2232 3345677888888887665443
No 171
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.29 E-value=3.4e-11 Score=136.35 Aligned_cols=184 Identities=21% Similarity=0.294 Sum_probs=126.6
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCC--------------
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-------------- 548 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~-------------- 548 (815)
...+|++|.|++.+++.|...+... ..+..+|||||+|+|||++|+++|..+..
T Consensus 12 RP~~~~diiGq~~~v~~L~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~ 79 (451)
T PRK06305 12 RPQTFSEILGQDAVVAVLKNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCA 79 (451)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccH
Confidence 3578999999999999888776431 23456999999999999999999988642
Q ss_pred -----------cEEEEeccchhhhccCccHHHHHHHHHHH----hhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHH
Q 003503 549 -----------NFISVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLN 613 (815)
Q Consensus 549 -----------~~i~v~~~~l~~~~~g~se~~i~~~F~~a----~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~ 613 (815)
.++.+++.... .-..++.+-+.. ......|+||||+|.+. ....+
T Consensus 80 ~C~~i~~~~~~d~~~i~g~~~~------gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt--------------~~~~n 139 (451)
T PRK06305 80 SCKEISSGTSLDVLEIDGASHR------GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT--------------KEAFN 139 (451)
T ss_pred HHHHHhcCCCCceEEeeccccC------CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC--------------HHHHH
Confidence 23444432211 112333333222 23456899999999873 22467
Q ss_pred HHHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHcCC
Q 003503 614 QLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHG 692 (815)
Q Consensus 614 ~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~t~g 692 (815)
.||..|+.. .+.+++|++||.+..|-+++.+ |+. .++|++++.++....+...+++.++.- +..+..|++.+.|
T Consensus 140 ~LLk~lEep--~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g 214 (451)
T PRK06305 140 SLLKTLEEP--PQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG 214 (451)
T ss_pred HHHHHhhcC--CCCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 888888864 3466777777888889999887 774 789999999999999988887766442 2346667776654
Q ss_pred CCHHHHHHHHHH
Q 003503 693 FSGADITEVCQR 704 (815)
Q Consensus 693 ~sg~di~~l~~~ 704 (815)
+-+++.+.+..
T Consensus 215 -dlr~a~~~Lek 225 (451)
T PRK06305 215 -SLRDAESLYDY 225 (451)
T ss_pred -CHHHHHHHHHH
Confidence 44444444443
No 172
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=4.8e-11 Score=139.24 Aligned_cols=188 Identities=22% Similarity=0.316 Sum_probs=134.2
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCc-------------
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------------- 549 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~------------- 549 (815)
...+|++|+|++++++.|...+.. + ..+..+||+||+|+|||++|+++|+.+...
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~-----------~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~ 78 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDT-----------G-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP 78 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH
Confidence 356899999999999999877643 1 334568999999999999999999987531
Q ss_pred -----------EEEEeccchhhhccCccHHHHHHHHHHHhhC----CCeEEEEecchhhhhccCCCCCCCCchHHHHHHH
Q 003503 550 -----------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQ 614 (815)
Q Consensus 550 -----------~i~v~~~~l~~~~~g~se~~i~~~F~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~ 614 (815)
++.+++.. ...-..++++.+.+... ...|++|||+|.+. ....+.
T Consensus 79 c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt--------------~~a~na 138 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS--------------TNAFNA 138 (576)
T ss_pred HHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC--------------HHHHHH
Confidence 33443322 11234577777665433 34699999999873 234678
Q ss_pred HHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHcCCC
Q 003503 615 LLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGF 693 (815)
Q Consensus 615 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~t~g~ 693 (815)
||..|+.. ...+++|.+|+.++.|.+.+++ |+ .++.|.+++.++....+...+++.++.- +..+..+++.+.|
T Consensus 139 LLk~LEep--p~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G- 212 (576)
T PRK14965 139 LLKTLEEP--PPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG- 212 (576)
T ss_pred HHHHHHcC--CCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-
Confidence 88888853 4467777788888999999887 77 4889999999998888888887766542 2346667776664
Q ss_pred CHHHHHHHHHHHHHH
Q 003503 694 SGADITEVCQRACKY 708 (815)
Q Consensus 694 sg~di~~l~~~a~~~ 708 (815)
+-+++.+++..+..+
T Consensus 213 ~lr~al~~Ldqliay 227 (576)
T PRK14965 213 SMRDSLSTLDQVLAF 227 (576)
T ss_pred CHHHHHHHHHHHHHh
Confidence 556666666554433
No 173
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.29 E-value=1.1e-10 Score=119.88 Aligned_cols=184 Identities=20% Similarity=0.258 Sum_probs=124.8
Q ss_pred ccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCc------EEEEe
Q 003503 481 EVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------FISVK 554 (815)
Q Consensus 481 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~------~i~v~ 554 (815)
....-+++++.|++.+.+.|...+.. ....++|||||||||||+.|+++|.++..+ +...+
T Consensus 29 KYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln 95 (346)
T KOG0989|consen 29 KYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN 95 (346)
T ss_pred HhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc
Confidence 34456789999999999998877543 223469999999999999999999998642 34445
Q ss_pred ccchhhhccCccHHHHHHHHHHHhhC----------CCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCC
Q 003503 555 GPELLTMWFGESEANVREIFDKARQS----------APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNA 624 (815)
Q Consensus 555 ~~~l~~~~~g~se~~i~~~F~~a~~~----------~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~ 624 (815)
.++-.+.-++. .-.+-|.+.... .+.|++|||.|++.. ...+.|...|+..
T Consensus 96 aSderGisvvr---~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts--------------daq~aLrr~mE~~-- 156 (346)
T KOG0989|consen 96 ASDERGISVVR---EKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS--------------DAQAALRRTMEDF-- 156 (346)
T ss_pred ccccccccchh---hhhcCHHHHhhccccccCCCCCcceEEEEechhhhhH--------------HHHHHHHHHHhcc--
Confidence 55544332211 011123322221 237999999999842 3456777888863
Q ss_pred CCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHcCCCCHHHHHHHHH
Q 003503 625 KKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVD-LSALARYTHGFSGADITEVCQ 703 (815)
Q Consensus 625 ~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~-~~~la~~t~g~sg~di~~l~~ 703 (815)
...+.+|..||.++.|.+.+.+ |+. .+.|++...+.....|+....+.++.-+.+ +..+++. |++|++..+.
T Consensus 157 s~~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~----S~GdLR~Ait 229 (346)
T KOG0989|consen 157 SRTTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKI----SDGDLRRAIT 229 (346)
T ss_pred ccceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHH----cCCcHHHHHH
Confidence 4566777888999999888887 886 567777777777888888887777663333 5556664 4557665443
No 174
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=2.4e-11 Score=138.34 Aligned_cols=188 Identities=22% Similarity=0.327 Sum_probs=128.0
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCC--------------
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-------------- 548 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~-------------- 548 (815)
.+.+|+++.|++.+.+.|...+... ..+..+|||||+|+|||++|+.+|..+..
T Consensus 11 RP~~f~diiGq~~i~~~L~~~i~~~------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~n 78 (486)
T PRK14953 11 RPKFFKEVIGQEIVVRILKNAVKLQ------------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCEN 78 (486)
T ss_pred CCCcHHHccChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHH
Confidence 4567899999999999888776431 23445899999999999999999998752
Q ss_pred ----------cEEEEeccchhhhccCccHHHHHHHHHHHhh----CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHH
Q 003503 549 ----------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQ 614 (815)
Q Consensus 549 ----------~~i~v~~~~l~~~~~g~se~~i~~~F~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~ 614 (815)
.++.++++. ...-..++.+.+.+.. ..+.|++|||+|.+. ....+.
T Consensus 79 c~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt--------------~~a~na 138 (486)
T PRK14953 79 CVEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT--------------KEAFNA 138 (486)
T ss_pred HHHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC--------------HHHHHH
Confidence 122222211 0122345565555433 345799999999873 224577
Q ss_pred HHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHcCCC
Q 003503 615 LLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGF 693 (815)
Q Consensus 615 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~t~g~ 693 (815)
||..|+.. ...+++|.+|+.++.+.+++.+ |+. ++.|++|+.++...+++..++..++.-+ ..+..|++.+.|
T Consensus 139 LLk~LEep--p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G- 212 (486)
T PRK14953 139 LLKTLEEP--PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG- 212 (486)
T ss_pred HHHHHhcC--CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 88888754 2344555566677888888887 775 7999999999999999999887765532 235667766553
Q ss_pred CHHHHHHHHHHHHHH
Q 003503 694 SGADITEVCQRACKY 708 (815)
Q Consensus 694 sg~di~~l~~~a~~~ 708 (815)
+-+++.+++..+...
T Consensus 213 ~lr~al~~Ldkl~~~ 227 (486)
T PRK14953 213 GMRDAASLLDQASTY 227 (486)
T ss_pred CHHHHHHHHHHHHHh
Confidence 556666666655433
No 175
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.28 E-value=2.2e-10 Score=116.12 Aligned_cols=168 Identities=22% Similarity=0.319 Sum_probs=119.2
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechh
Q 003503 208 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPE 284 (815)
Q Consensus 208 ~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~ 284 (815)
.+..+.++++.|++.+++.|.+-....+. -.+..++||+|+.|||||++++++..+. |..++.|...+
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~---------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~ 90 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQ---------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED 90 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHc---------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH
Confidence 45678999999999999998766543211 2478899999999999999999999876 56678887655
Q ss_pred hhhhhhchhHHHHHHHHHHHH-hcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhccc--CCCcEEEEEecCCC
Q 003503 285 IMSKLAGESESNLRKAFEEAE-KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK--SRAHVIVMGATNRP 361 (815)
Q Consensus 285 l~~~~~g~~~~~l~~vf~~a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--~~~~vivi~atn~~ 361 (815)
+.. +..+++... ...+-|||+|++.+=... .-...|.+.|+|-- ...+|++.+|+|+.
T Consensus 91 L~~---------l~~l~~~l~~~~~kFIlf~DDLsFe~~d----------~~yk~LKs~LeGgle~~P~NvliyATSNRR 151 (249)
T PF05673_consen 91 LGD---------LPELLDLLRDRPYKFILFCDDLSFEEGD----------TEYKALKSVLEGGLEARPDNVLIYATSNRR 151 (249)
T ss_pred hcc---------HHHHHHHHhcCCCCEEEEecCCCCCCCc----------HHHHHHHHHhcCccccCCCcEEEEEecchh
Confidence 532 333444433 335679999997642211 12356777777643 24578888999976
Q ss_pred CCCCH---------------------HhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcccc
Q 003503 362 NSIDP---------------------ALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAE 403 (815)
Q Consensus 362 ~~ld~---------------------al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~ 403 (815)
+.+.+ .+.-..||...+.|..|+.++-++|++.+++...+.-
T Consensus 152 HLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~ 214 (249)
T PF05673_consen 152 HLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLEL 214 (249)
T ss_pred hccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 54432 2222358999999999999999999999987665543
No 176
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=5.1e-11 Score=132.77 Aligned_cols=188 Identities=20% Similarity=0.315 Sum_probs=129.5
Q ss_pred cCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCc----------E-
Q 003503 482 VPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN----------F- 550 (815)
Q Consensus 482 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~----------~- 550 (815)
..+.+|++++|.+.+.+.+...+.. + ..+.++|||||||+|||++|++++..+... +
T Consensus 11 ~rP~~~~~iig~~~~~~~l~~~i~~-----------~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~ 78 (367)
T PRK14970 11 YRPQTFDDVVGQSHITNTLLNAIEN-----------N-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFN 78 (367)
T ss_pred HCCCcHHhcCCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 3457899999999999888777643 1 234679999999999999999999987542 1
Q ss_pred -EEEeccchhhhccCccHHHHHHHHHHHhhC----CCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCC
Q 003503 551 -ISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAK 625 (815)
Q Consensus 551 -i~v~~~~l~~~~~g~se~~i~~~F~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~ 625 (815)
+.++.. .......++.+++.+... .+.|+|+||+|.+.. ..++.|+..++.. .
T Consensus 79 ~~~l~~~------~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~--------------~~~~~ll~~le~~--~ 136 (367)
T PRK14970 79 IFELDAA------SNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS--------------AAFNAFLKTLEEP--P 136 (367)
T ss_pred eEEeccc------cCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH--------------HHHHHHHHHHhCC--C
Confidence 111111 112245677778766432 347999999998732 2356777777653 3
Q ss_pred CcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHH
Q 003503 626 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEVCQR 704 (815)
Q Consensus 626 ~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~t~g~sg~di~~l~~~ 704 (815)
...++|.+|+.+..+.+++.+ |+. .+.|++|+.++...++...+.+.++. ++..+..|++.+.| +-+.+.+.++.
T Consensus 137 ~~~~~Il~~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lek 212 (367)
T PRK14970 137 AHAIFILATTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDR 212 (367)
T ss_pred CceEEEEEeCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 345555667777888888887 664 78999999999999999888776653 23346677776543 55555555555
Q ss_pred HHH
Q 003503 705 ACK 707 (815)
Q Consensus 705 a~~ 707 (815)
...
T Consensus 213 l~~ 215 (367)
T PRK14970 213 VVT 215 (367)
T ss_pred HHH
Confidence 543
No 177
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.28 E-value=4.6e-11 Score=124.24 Aligned_cols=159 Identities=16% Similarity=0.125 Sum_probs=100.8
Q ss_pred cceEEeCCCCCChhHHHHHHHHHhC---CcEEEEeccchhhhccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCC
Q 003503 523 KGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGS 599 (815)
Q Consensus 523 ~gilL~GppGtGKT~lakala~~~~---~~~i~v~~~~l~~~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~ 599 (815)
..++|+||+|||||+|++++++... .....+...+... ...++++.... ..+++|||++.+...
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~--- 112 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGD--- 112 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--------hhHHHHHHhhh--CCEEEEeChhhhcCC---
Confidence 4699999999999999999998764 2344444433211 11222332222 258999999998532
Q ss_pred CCCCCCchHHHHHHHHHhccccCCCCCc-EEEEEecCCCCC---CCccccCCCCCc--ceeeccCCCHHHHHHHHHHHhc
Q 003503 600 STGDAGGAADRVLNQLLTEMDGMNAKKT-VFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEASRLQIFKACLR 673 (815)
Q Consensus 600 ~~~~~~~~~~~vl~~lL~~ld~~~~~~~-v~vi~aTn~~~~---ld~allr~gRf~--~~i~~~~p~~~~r~~Il~~~l~ 673 (815)
....+.+-.+++.+ ...++ .+|+++++.|.. +.|.|.+ |+. .++.+.+|+.+++.++++....
T Consensus 113 ------~~~~~~lf~l~n~~---~e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~ 181 (235)
T PRK08084 113 ------ELWEMAIFDLYNRI---LESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRAR 181 (235)
T ss_pred ------HHHHHHHHHHHHHH---HHcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHH
Confidence 11222333333332 22333 456666666655 5788887 875 8899999999999999998665
Q ss_pred cCCCCCc-ccHHHHHHHcCCCCHHHHHHHHHHHH
Q 003503 674 KSPISPD-VDLSALARYTHGFSGADITEVCQRAC 706 (815)
Q Consensus 674 ~~~~~~~-~~~~~la~~t~g~sg~di~~l~~~a~ 706 (815)
..++.-+ .-++.|+++..| +.+.+.+++....
T Consensus 182 ~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~ 214 (235)
T PRK08084 182 LRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLD 214 (235)
T ss_pred HcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHH
Confidence 5444322 236777777664 7777777777643
No 178
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=1.4e-10 Score=136.40 Aligned_cols=192 Identities=18% Similarity=0.220 Sum_probs=125.5
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEE--------
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFF-------- 278 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i-------- 278 (815)
+++++.+|++|.|++..++.|+.++... ..+..+||+||+||||||+||++|+.++....
T Consensus 8 eKyRP~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~ 75 (944)
T PRK14949 8 RKWRPATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGV 75 (944)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCC
Confidence 4678899999999999999998887631 22445799999999999999999999865310
Q ss_pred EEechhhhhh-------hh---chhHHHHHHHHHHHH----hcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhh
Q 003503 279 LINGPEIMSK-------LA---GESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMD 344 (815)
Q Consensus 279 ~v~~~~l~~~-------~~---g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld 344 (815)
.-.|..+... .. ...-..+|.+.+... .+...|+||||+|.+. ....+.|+..|+
T Consensus 76 C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT-----------~eAqNALLKtLE 144 (944)
T PRK14949 76 CSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS-----------RSSFNALLKTLE 144 (944)
T ss_pred chHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC-----------HHHHHHHHHHHh
Confidence 0001111100 00 011233455554432 2344699999999884 235577788887
Q ss_pred cccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhhHHHhhcCCCcHHHHH
Q 003503 345 GLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYVGSDLA 423 (815)
Q Consensus 345 ~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~ 423 (815)
... ..+.+|.+|+.+..|.+.+++ |+ ..+.|..++.++-...|+..+....+. .+..+..++..+.|-.+ +..
T Consensus 145 EPP--~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R-~AL 218 (944)
T PRK14949 145 EPP--EHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMR-DAL 218 (944)
T ss_pred ccC--CCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHH
Confidence 543 356666678888889888887 55 568899998888888777665443322 23346677777776444 444
Q ss_pred HHHH
Q 003503 424 ALCT 427 (815)
Q Consensus 424 ~l~~ 427 (815)
.++.
T Consensus 219 nLLd 222 (944)
T PRK14949 219 SLTD 222 (944)
T ss_pred HHHH
Confidence 4444
No 179
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=1.1e-10 Score=133.40 Aligned_cols=188 Identities=17% Similarity=0.229 Sum_probs=127.6
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe----------
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 276 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~---------- 276 (815)
.++++-+|+++.|.+..++.|+.++... ..+..+||+||+|+||||+|+++|+.++..
T Consensus 7 rKyRPktFddVIGQe~vv~~L~~aI~~g------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~ 74 (702)
T PRK14960 7 RKYRPRNFNELVGQNHVSRALSSALERG------------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEV 74 (702)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCcc
Confidence 4577889999999999999998887631 234678999999999999999999988642
Q ss_pred --------------EEEEechhhhhhhhchhHHHHHHHHHHHH----hcCCcEEEecccccccCCCCCchhHHHHHHHHH
Q 003503 277 --------------FFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 338 (815)
Q Consensus 277 --------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 338 (815)
++.+++.+ ...-..+|.+...+. .+...|+||||+|.+.. ...+.
T Consensus 75 C~sC~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~-----------~A~NA 137 (702)
T PRK14960 75 CATCKAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST-----------HSFNA 137 (702)
T ss_pred CHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH-----------HHHHH
Confidence 23333321 112334555555432 23456999999998742 23466
Q ss_pred HHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhhHHHhhcCCC
Q 003503 339 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 417 (815)
Q Consensus 339 Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~ 417 (815)
|+..++... ..+.+|.+|+.+..+.+.+++ |+ ..+.+..++..+-...++..+....+. ++..+..++..+.|
T Consensus 138 LLKtLEEPP--~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G- 211 (702)
T PRK14960 138 LLKTLEEPP--EHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG- 211 (702)
T ss_pred HHHHHhcCC--CCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 777777533 355666677888888888776 55 568899999888888777666544332 33456777777766
Q ss_pred cHHHHHHHHHHH
Q 003503 418 VGSDLAALCTEA 429 (815)
Q Consensus 418 ~~~dl~~l~~~a 429 (815)
..+++..++..+
T Consensus 212 dLRdALnLLDQa 223 (702)
T PRK14960 212 SLRDALSLTDQA 223 (702)
T ss_pred CHHHHHHHHHHH
Confidence 444555554443
No 180
>PLN03025 replication factor C subunit; Provisional
Probab=99.27 E-value=1.1e-10 Score=127.37 Aligned_cols=175 Identities=19% Similarity=0.221 Sum_probs=117.0
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC-----CeEEEEe
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG-----AFFFLIN 281 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~-----~~~i~v~ 281 (815)
+++++-+++++.|.++.++.|+.++.. ....++||+|||||||||+|+++|+++. ..++.++
T Consensus 5 ~kyrP~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln 71 (319)
T PLN03025 5 EKYRPTKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN 71 (319)
T ss_pred hhcCCCCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec
Confidence 467888999999999999998887653 1123699999999999999999999872 2355666
Q ss_pred chhhhhhhhchhHHHHHHHHHHHH-------hcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEE
Q 003503 282 GPEIMSKLAGESESNLRKAFEEAE-------KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIV 354 (815)
Q Consensus 282 ~~~l~~~~~g~~~~~l~~vf~~a~-------~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viv 354 (815)
+++..+. ..++..+.... .....+++|||+|.+... ....|+..++..... ..+
T Consensus 72 ~sd~~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~-----------aq~aL~~~lE~~~~~--t~~ 132 (319)
T PLN03025 72 ASDDRGI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG-----------AQQALRRTMEIYSNT--TRF 132 (319)
T ss_pred ccccccH------HHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH-----------HHHHHHHHHhcccCC--ceE
Confidence 5543211 12232222211 123569999999988532 234566666543332 334
Q ss_pred EEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhhHHHhhcCC
Q 003503 355 MGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHG 416 (815)
Q Consensus 355 i~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g 416 (815)
+.++|....+.+++++ |+ ..+.+..|+.++....++..++...+. .+..+..++....|
T Consensus 133 il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g 192 (319)
T PLN03025 133 ALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG 192 (319)
T ss_pred EEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 5577788888888987 54 468899999999888888766543322 23456677666554
No 181
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.27 E-value=3.8e-11 Score=138.86 Aligned_cols=184 Identities=22% Similarity=0.285 Sum_probs=128.4
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCc-------------
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------------- 549 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~------------- 549 (815)
.+.+|++|.|++.+++.|...+.. + ..+..+|||||+|+|||++|+++|..+...
T Consensus 11 RP~~f~diiGqe~iv~~L~~~i~~-----------~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 11 RPRDFNSLEGQDFVVETLKHSIES-----------N-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 456899999999999988877653 1 234569999999999999999999987531
Q ss_pred -----------EEEEeccchhhhccCccHHHHHHHHHHH----hhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHH
Q 003503 550 -----------FISVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQ 614 (815)
Q Consensus 550 -----------~i~v~~~~l~~~~~g~se~~i~~~F~~a----~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~ 614 (815)
++.+++.. ...-..++.+.+.+ ......|++|||+|.+. ....+.
T Consensus 79 C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls--------------~~a~na 138 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS--------------NSAFNA 138 (563)
T ss_pred HHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC--------------HHHHHH
Confidence 23332211 01224455555433 23456799999999873 235678
Q ss_pred HHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHcCCC
Q 003503 615 LLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGF 693 (815)
Q Consensus 615 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~t~g~ 693 (815)
||..|+. +...+++|++|+.++.|.+++.+ |+. .+.|.+++.++..++++..++..++.- +..+..|++...|
T Consensus 139 LLK~LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G- 212 (563)
T PRK06647 139 LLKTIEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG- 212 (563)
T ss_pred HHHhhcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 8888885 34466777777778888889887 875 689999999999999998886665542 2335566666554
Q ss_pred CHHHHHHHHHH
Q 003503 694 SGADITEVCQR 704 (815)
Q Consensus 694 sg~di~~l~~~ 704 (815)
+.+++.+++..
T Consensus 213 dlR~alslLdk 223 (563)
T PRK06647 213 SVRDAYTLFDQ 223 (563)
T ss_pred CHHHHHHHHHH
Confidence 55666555544
No 182
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.27 E-value=7.4e-11 Score=136.48 Aligned_cols=200 Identities=25% Similarity=0.386 Sum_probs=127.6
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCe
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAF 276 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l----------~~~ 276 (815)
+++++.+|+++.|.+..++.++..+.. ..+.+|||+||||||||++|+++.... +.+
T Consensus 57 ~~~rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~ 123 (531)
T TIGR02902 57 EKTRPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAA 123 (531)
T ss_pred HhhCcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCC
Confidence 456788999999999999988765422 235689999999999999999997642 356
Q ss_pred EEEEechhhh-------hhhhchhHHHH---HHHHH----------HHHhcCCcEEEecccccccCCCCCchhHHHHHHH
Q 003503 277 FFLINGPEIM-------SKLAGESESNL---RKAFE----------EAEKNAPSIIFIDELDSIAPKREKTHGEVERRIV 336 (815)
Q Consensus 277 ~i~v~~~~l~-------~~~~g~~~~~l---~~vf~----------~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~ 336 (815)
++.++|.... ....+.....+ ...|. ........+|||||++.+.+. ..
T Consensus 124 fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~-----------~q 192 (531)
T TIGR02902 124 FVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPV-----------QM 192 (531)
T ss_pred EEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHH-----------HH
Confidence 7888875311 00001000000 00000 011223469999999988533 23
Q ss_pred HHHHHhhhccc---------------------------CCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHH
Q 003503 337 SQLLTLMDGLK---------------------------SRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRL 389 (815)
Q Consensus 337 ~~Ll~~ld~~~---------------------------~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~ 389 (815)
+.|+..|+.-. ...-.++.+|++.++.+++++++ |+ ..+.++.++.++..
T Consensus 193 ~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~eei~ 269 (531)
T TIGR02902 193 NKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RC-VEIFFRPLLDEEIK 269 (531)
T ss_pred HHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hh-heeeCCCCCHHHHH
Confidence 44444443210 01123455677889999999998 76 46789999999999
Q ss_pred HHHHHHhcCCccc-cchhhhHHHhhcCCCcHHHHHHHHHHHHHHhHH
Q 003503 390 EILRIHTKNMKLA-EDVDLERVAKDTHGYVGSDLAALCTEAALQCIR 435 (815)
Q Consensus 390 ~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~ 435 (815)
++++..+++..+. ++..+..++..+ +.++++.++++.|+..+..
T Consensus 270 ~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~ 314 (531)
T TIGR02902 270 EIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALG 314 (531)
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhh
Confidence 9999887765533 223345555433 3678888998888765543
No 183
>PRK05642 DNA replication initiation factor; Validated
Probab=99.26 E-value=9.8e-11 Score=121.63 Aligned_cols=163 Identities=17% Similarity=0.208 Sum_probs=110.0
Q ss_pred cceEEeCCCCCChhHHHHHHHHHh---CCcEEEEeccchhhhccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCC
Q 003503 523 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGS 599 (815)
Q Consensus 523 ~gilL~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~ 599 (815)
..++|+||+|||||+|++++++++ +...+.++..++... ...+.+..+.. .+++|||++.+..+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~~--d~LiiDDi~~~~~~~-- 113 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLEQY--ELVCLDDLDVIAGKA-- 113 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhhhC--CEEEEechhhhcCCh--
Confidence 568999999999999999999764 456777888776542 12233333333 589999999874321
Q ss_pred CCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCCC---CccccCCCCC--cceeeccCCCHHHHHHHHHHHhcc
Q 003503 600 STGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDII---DPALLRPGRL--DQLIYIPLPDEASRLQIFKACLRK 674 (815)
Q Consensus 600 ~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~l---d~allr~gRf--~~~i~~~~p~~~~r~~Il~~~l~~ 674 (815)
. ....|+..++.....++.+||+++..|..+ .|.+.+ || ..++.+.+|+.++|.+|++.....
T Consensus 114 -------~---~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~ 181 (234)
T PRK05642 114 -------D---WEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASR 181 (234)
T ss_pred -------H---HHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHH
Confidence 1 123455555555555677888887766543 688887 87 467788999999999999966654
Q ss_pred CCCCC-cccHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 003503 675 SPISP-DVDLSALARYTHGFSGADITEVCQRACKYAI 710 (815)
Q Consensus 675 ~~~~~-~~~~~~la~~t~g~sg~di~~l~~~a~~~a~ 710 (815)
.++.- +.-++.|+++.. -+.+.+.+++......++
T Consensus 182 ~~~~l~~ev~~~L~~~~~-~d~r~l~~~l~~l~~~~l 217 (234)
T PRK05642 182 RGLHLTDEVGHFILTRGT-RSMSALFDLLERLDQASL 217 (234)
T ss_pred cCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Confidence 43332 223566777665 477777777776554333
No 184
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.26 E-value=7.7e-11 Score=128.77 Aligned_cols=175 Identities=20% Similarity=0.321 Sum_probs=129.8
Q ss_pred CcceEEeCCCCCChhHHHHHHHHHhC-----CcEEEEeccchhhhccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhc
Q 003503 522 SKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 596 (815)
Q Consensus 522 ~~gilL~GppGtGKT~lakala~~~~-----~~~i~v~~~~l~~~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~ 596 (815)
...++||||.|+|||+|++|++++.. ..++.+...++...++-....+-..-|++-+ .-.+++||+|+.+.++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 44599999999999999999998863 3578888888877766555444555677776 4479999999999654
Q ss_pred cCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCCC---CccccCCCCCc--ceeeccCCCHHHHHHHHHHH
Q 003503 597 RGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDII---DPALLRPGRLD--QLIYIPLPDEASRLQIFKAC 671 (815)
Q Consensus 597 r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~l---d~allr~gRf~--~~i~~~~p~~~~r~~Il~~~ 671 (815)
++....|...+..+...++.+|+.+...|..+ +|.|.+ ||. .++.+.+||.+.|..|++..
T Consensus 191 ------------~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kk 256 (408)
T COG0593 191 ------------ERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKK 256 (408)
T ss_pred ------------hhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHH
Confidence 22345666666666666677888887888765 477776 876 66788999999999999998
Q ss_pred hccCCCCCccc-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Q 003503 672 LRKSPISPDVD-LSALARYTHGFSGADITEVCQRACKYAIREN 713 (815)
Q Consensus 672 l~~~~~~~~~~-~~~la~~t~g~sg~di~~l~~~a~~~a~~~~ 713 (815)
....++.-+.+ +..+|.... -+.+++..++......|....
T Consensus 257 a~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a~~~~ 298 (408)
T COG0593 257 AEDRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFALFTK 298 (408)
T ss_pred HHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHhcC
Confidence 77665553333 566676654 477888888888777776544
No 185
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.26 E-value=8.6e-11 Score=121.85 Aligned_cols=159 Identities=14% Similarity=0.182 Sum_probs=102.4
Q ss_pred CCcceEEeCCCCCChhHHHHHHHHHh---CCcEEEEeccchhhhccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhcc
Q 003503 521 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 597 (815)
Q Consensus 521 ~~~gilL~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r 597 (815)
...+++|+||+|||||+||+++++.. +.+++.+++.++... +.. .....+++|||+|.+..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~------------~~~--~~~~~~liiDdi~~l~~-- 104 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA------------FDF--DPEAELYAVDDVERLDD-- 104 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH------------Hhh--cccCCEEEEeChhhcCc--
Confidence 34579999999999999999999876 456777777665321 111 22346999999998631
Q ss_pred CCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCC-CC--CCCccccCCCCC--cceeeccCCCHHHHHHHHHHHh
Q 003503 598 GSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNR-PD--IIDPALLRPGRL--DQLIYIPLPDEASRLQIFKACL 672 (815)
Q Consensus 598 ~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~-~~--~ld~allr~gRf--~~~i~~~~p~~~~r~~Il~~~l 672 (815)
... ..|+..++.....+..++|.+++. |. .+.+.+.+ || ...+.+++|+.+++..+++...
T Consensus 105 ---------~~~---~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 105 ---------AQQ---IALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred ---------hHH---HHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 112 233334443333444334444443 32 24566665 66 5799999999999999998877
Q ss_pred ccCCCCCcc-cHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 003503 673 RKSPISPDV-DLSALARYTHGFSGADITEVCQRACKYAI 710 (815)
Q Consensus 673 ~~~~~~~~~-~~~~la~~t~g~sg~di~~l~~~a~~~a~ 710 (815)
...++.-+. -+..|++... -+.+++.++++.....|.
T Consensus 171 ~~~~v~l~~~al~~L~~~~~-gn~~~l~~~l~~l~~~~~ 208 (227)
T PRK08903 171 AERGLQLADEVPDYLLTHFR-RDMPSLMALLDALDRYSL 208 (227)
T ss_pred HHcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHH
Confidence 655444322 3566777444 477888888887554443
No 186
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.26 E-value=1.9e-10 Score=133.49 Aligned_cols=187 Identities=18% Similarity=0.274 Sum_probs=127.8
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe----------
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 276 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~---------- 276 (815)
.++.+-+|++|.|++..++.|+..+... .-+..+||+||+|+||||+|+.+|+.++..
T Consensus 8 ~KyRP~~f~divGQe~vv~~L~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~ 75 (647)
T PRK07994 8 RKWRPQTFAEVVGQEHVLTALANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGE 75 (647)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCC
Confidence 4567889999999999999998877641 123458999999999999999999988652
Q ss_pred --------------EEEEechhhhhhhhchhHHHHHHHHHHHH----hcCCcEEEecccccccCCCCCchhHHHHHHHHH
Q 003503 277 --------------FFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 338 (815)
Q Consensus 277 --------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 338 (815)
++.+++.. ...-..++.+.+.+. .+...|+||||+|.+.. ...+.
T Consensus 76 C~~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~-----------~a~NA 138 (647)
T PRK07994 76 CDNCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNA 138 (647)
T ss_pred CHHHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH-----------HHHHH
Confidence 22233211 012234555554432 33456999999998852 34567
Q ss_pred HHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhhHHHhhcCCC
Q 003503 339 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 417 (815)
Q Consensus 339 Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~ 417 (815)
|+..|+.. ...+.+|.+|+.+..+.+.+++ |+ ..+.+..++.++-...|+..++...+. ++..+..++..+.|-
T Consensus 139 LLKtLEEP--p~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs 213 (647)
T PRK07994 139 LLKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGS 213 (647)
T ss_pred HHHHHHcC--CCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 78877753 3456677778889999999888 64 778999999998888887766443332 234466777777765
Q ss_pred cHHHHHHHHHH
Q 003503 418 VGSDLAALCTE 428 (815)
Q Consensus 418 ~~~dl~~l~~~ 428 (815)
.+ +...++..
T Consensus 214 ~R-~Al~lldq 223 (647)
T PRK07994 214 MR-DALSLTDQ 223 (647)
T ss_pred HH-HHHHHHHH
Confidence 44 33444443
No 187
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=1.9e-10 Score=127.46 Aligned_cols=187 Identities=19% Similarity=0.261 Sum_probs=124.3
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe----------
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 276 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~---------- 276 (815)
+++.+.+|++|.|++..++.++..+... ..+..+||+||+|+||||+|+++|+.+...
T Consensus 8 ~kyrP~~~~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~ 75 (363)
T PRK14961 8 RKWRPQYFRDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRK 75 (363)
T ss_pred HHhCCCchhhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 4678889999999999999998877531 224568999999999999999999987532
Q ss_pred --------------EEEEechhhhhhhhchhHHHHHHHHHHHHh----cCCcEEEecccccccCCCCCchhHHHHHHHHH
Q 003503 277 --------------FFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 338 (815)
Q Consensus 277 --------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 338 (815)
++.+++.. ...-..++.+.+.... ....++||||+|.+.. ...+.
T Consensus 76 c~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~-----------~a~na 138 (363)
T PRK14961 76 CIICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR-----------HSFNA 138 (363)
T ss_pred CHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH-----------HHHHH
Confidence 11222110 0122345555555432 2345999999998742 23455
Q ss_pred HHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcc-ccchhhhHHHhhcCCC
Q 003503 339 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AEDVDLERVAKDTHGY 417 (815)
Q Consensus 339 Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l-~~~~~l~~la~~t~g~ 417 (815)
|+..++... ..+.+|.+|+.++.+.+.+++ |+ ..+++..++.++..+++...++.... .++..+..++..+.|
T Consensus 139 LLk~lEe~~--~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G- 212 (363)
T PRK14961 139 LLKTLEEPP--QHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG- 212 (363)
T ss_pred HHHHHhcCC--CCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 677776533 345566667778888888886 65 56899999999999888876655443 233456667777665
Q ss_pred cHHHHHHHHHH
Q 003503 418 VGSDLAALCTE 428 (815)
Q Consensus 418 ~~~dl~~l~~~ 428 (815)
..+++..++..
T Consensus 213 ~~R~al~~l~~ 223 (363)
T PRK14961 213 SMRDALNLLEH 223 (363)
T ss_pred CHHHHHHHHHH
Confidence 33444444443
No 188
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.25 E-value=3.7e-11 Score=127.09 Aligned_cols=132 Identities=25% Similarity=0.339 Sum_probs=92.0
Q ss_pred CcceEEeCCCCCChhHHHHHHHHHhCCcEEEEecc------chhhhccCccHHHHH---------------------HHH
Q 003503 522 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP------ELLTMWFGESEANVR---------------------EIF 574 (815)
Q Consensus 522 ~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~------~l~~~~~g~se~~i~---------------------~~F 574 (815)
...++|+||||||||++|+++|..++.+++.+++. ++++.|.|...+.+. .++
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 35699999999999999999999999999988653 444444433222111 122
Q ss_pred HHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCC--------------CCCcEEEEEecCCCC--
Q 003503 575 DKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN--------------AKKTVFIIGATNRPD-- 638 (815)
Q Consensus 575 ~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~--------------~~~~v~vi~aTn~~~-- 638 (815)
..++. ..++++|||+.+- ..+.+.|+..|+.-. ...++.||+|+|...
T Consensus 101 ~A~~~--g~~lllDEi~r~~--------------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~ 164 (262)
T TIGR02640 101 LAVRE--GFTLVYDEFTRSK--------------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYA 164 (262)
T ss_pred HHHHc--CCEEEEcchhhCC--------------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcccc
Confidence 22222 3599999999863 224444555454211 113567999999763
Q ss_pred ---CCCccccCCCCCcceeeccCCCHHHHHHHHHHHh
Q 003503 639 ---IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACL 672 (815)
Q Consensus 639 ---~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l 672 (815)
.+++++++ || ..++++.|+.++-.+|++.+.
T Consensus 165 g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 165 GVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 46889998 98 589999999999999999765
No 189
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.25 E-value=3.6e-11 Score=123.39 Aligned_cols=170 Identities=23% Similarity=0.378 Sum_probs=111.8
Q ss_pred cceEEeCCCCCChhHHHHHHHHHh-----CCcEEEEeccchhhhccCccHH-HHHHHHHHHhhCCCeEEEEecchhhhhc
Q 003503 523 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEA-NVREIFDKARQSAPCVLFFDELDSIATQ 596 (815)
Q Consensus 523 ~gilL~GppGtGKT~lakala~~~-----~~~~i~v~~~~l~~~~~g~se~-~i~~~F~~a~~~~p~ilfiDEid~l~~~ 596 (815)
..++||||+|+|||+|.++++++. +..++++++.++...+...... .+..+....+ ...+|+||+++.+..+
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~ 112 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGK 112 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCc
Confidence 358999999999999999999875 4568889888887665432222 2223223333 3469999999998532
Q ss_pred cCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCCC---CccccCCCCCc--ceeeccCCCHHHHHHHHHHH
Q 003503 597 RGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDII---DPALLRPGRLD--QLIYIPLPDEASRLQIFKAC 671 (815)
Q Consensus 597 r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~l---d~allr~gRf~--~~i~~~~p~~~~r~~Il~~~ 671 (815)
.+....|+..++.+...++.+|+++...|..+ ++.+.+ ||. .++.+.+||.+.|.+|++..
T Consensus 113 ------------~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~ 178 (219)
T PF00308_consen 113 ------------QRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKK 178 (219)
T ss_dssp ------------HHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHH
T ss_pred ------------hHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHH
Confidence 23445555555555556667788887777765 566666 775 57889999999999999999
Q ss_pred hccCCCCCccc-HHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 003503 672 LRKSPISPDVD-LSALARYTHGFSGADITEVCQRACKYA 709 (815)
Q Consensus 672 l~~~~~~~~~~-~~~la~~t~g~sg~di~~l~~~a~~~a 709 (815)
+...++.-+.+ +..|++... -+.++|..++.....++
T Consensus 179 a~~~~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 179 AKERGIELPEEVIEYLARRFR-RDVRELEGALNRLDAYA 216 (219)
T ss_dssp HHHTT--S-HHHHHHHHHHTT-SSHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCcHHHHHHHHHhhc-CCHHHHHHHHHHHHHHh
Confidence 98776654333 456666654 47888888887766544
No 190
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.24 E-value=5.2e-11 Score=126.77 Aligned_cols=143 Identities=19% Similarity=0.201 Sum_probs=100.5
Q ss_pred cCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchhhh--ccCccHHH----------HHHHHHHHhhCCCeEE
Q 003503 518 GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM--WFGESEAN----------VREIFDKARQSAPCVL 585 (815)
Q Consensus 518 ~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~--~~g~se~~----------i~~~F~~a~~~~p~il 585 (815)
++...++++|.||||||||++++.+|..++.+++.|++...++. ++|...-. ....+-.|.. .++++
T Consensus 60 ~l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~il 138 (327)
T TIGR01650 60 GFAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVAL 138 (327)
T ss_pred HHhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEE
Confidence 34445679999999999999999999999999999987665544 45542111 1112334433 35789
Q ss_pred EEecchhhhhccCCCCCCCCchHHHHHHHHHhc-----ccc----CCCCCcEEEEEecCCCC------------CCCccc
Q 003503 586 FFDELDSIATQRGSSTGDAGGAADRVLNQLLTE-----MDG----MNAKKTVFIIGATNRPD------------IIDPAL 644 (815)
Q Consensus 586 fiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~-----ld~----~~~~~~v~vi~aTn~~~------------~ld~al 644 (815)
++||+|..-+ .....++.+|.. +.+ +.....+.||||+|..+ .+++|+
T Consensus 139 llDEin~a~p-----------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~ 207 (327)
T TIGR01650 139 CFDEYDAGRP-----------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQ 207 (327)
T ss_pred EechhhccCH-----------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHH
Confidence 9999998622 233445555542 111 11334688999999865 268899
Q ss_pred cCCCCCcceeeccCCCHHHHHHHHHHHhcc
Q 003503 645 LRPGRLDQLIYIPLPDEASRLQIFKACLRK 674 (815)
Q Consensus 645 lr~gRf~~~i~~~~p~~~~r~~Il~~~l~~ 674 (815)
+. ||-.++.+++|+.++-.+|+......
T Consensus 208 lD--RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 208 MD--RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred Hh--heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 98 99888899999999999999876543
No 191
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.24 E-value=1.1e-10 Score=133.30 Aligned_cols=63 Identities=14% Similarity=0.201 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhc
Q 003503 294 ESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRR 370 (815)
Q Consensus 294 ~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r 370 (815)
..+.|..+..+.-..|++|++|| |.+..+-..+.+|-..+..+.. .||..+++.+.||....+
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDE----------PTNHLD~~~i~WLe~~L~~~~g----tviiVSHDR~FLd~V~t~ 219 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDE----------PTNHLDLESIEWLEDYLKRYPG----TVIVVSHDRYFLDNVATH 219 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcC----------CCcccCHHHHHHHHHHHHhCCC----cEEEEeCCHHHHHHHhhh
Confidence 34567777778888999999999 5555566677788777765443 344457777666654443
No 192
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.24 E-value=4e-10 Score=116.69 Aligned_cols=181 Identities=18% Similarity=0.264 Sum_probs=112.0
Q ss_pred cChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhhhchhH
Q 003503 218 GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGESE 294 (815)
Q Consensus 218 ~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~~ 294 (815)
++.+..++.+++++.. ..+.+++|+||+|||||++|++++... +..++.+++.++....
T Consensus 20 ~~~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~----- 81 (226)
T TIGR03420 20 GGNAELLAALRQLAAG-------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD----- 81 (226)
T ss_pred CCcHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH-----
Confidence 4667777888776531 346789999999999999999999876 4567888887775332
Q ss_pred HHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCC---HHhhcc
Q 003503 295 SNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID---PALRRF 371 (815)
Q Consensus 295 ~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld---~al~r~ 371 (815)
..+++.. ....+|+|||++.+..... ....|..+++........+|++++..+..++ +.+.+.
T Consensus 82 ---~~~~~~~--~~~~lLvIDdi~~l~~~~~---------~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r 147 (226)
T TIGR03420 82 ---PEVLEGL--EQADLVCLDDVEAIAGQPE---------WQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTR 147 (226)
T ss_pred ---HHHHhhc--ccCCEEEEeChhhhcCChH---------HHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHH
Confidence 1222222 2345999999998754310 1233444444433333345554444444332 666652
Q ss_pred CCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhhHHHhhcCCCcHHHHHHHHHHHHH
Q 003503 372 GRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYVGSDLAALCTEAAL 431 (815)
Q Consensus 372 ~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~ 431 (815)
..+...+.++.|+.+++..+++.+.....+. .+..+..++.. -+-..+++..++..+..
T Consensus 148 ~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~ 207 (226)
T TIGR03420 148 LAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDR 207 (226)
T ss_pred HhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHH
Confidence 2235788999999999999998765433322 22345666664 33345566666655443
No 193
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.23 E-value=2.2e-10 Score=137.40 Aligned_cols=163 Identities=22% Similarity=0.338 Sum_probs=116.9
Q ss_pred ccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh--------
Q 003503 215 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM-------- 286 (815)
Q Consensus 215 ~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~-------- 286 (815)
.+..|+++.++.|.+++..... .+-..+..++|+||||+|||++++.+|+.++.+++.++.....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~-------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSR-------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHh-------cccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 3588999999999888764221 1123566799999999999999999999999998877654321
Q ss_pred -hhhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcc-----c--------CCCcE
Q 003503 287 -SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGL-----K--------SRAHV 352 (815)
Q Consensus 287 -~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~-----~--------~~~~v 352 (815)
..+.|.....+...+..+....| ++++||+|.+....... ....|+..+|.- . .-.++
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g~-------~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRGD-------PASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCCC-------HHHHHHHHhccccEEEEecccccccccCCce
Confidence 13445444555555555443444 89999999997653221 234566666531 1 12678
Q ss_pred EEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHh
Q 003503 353 IVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHT 396 (815)
Q Consensus 353 ivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~ 396 (815)
++|+|+|.. .++++|+. |+ ..+.+..++.++..+|.+.++
T Consensus 467 ~~i~TaN~~-~i~~aLl~--R~-~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 467 MFVATSNSM-NIPAPLLD--RM-EVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEEcCCCC-CCCHHHhc--ce-eeeecCCCCHHHHHHHHHHhh
Confidence 999999887 59999997 88 468899999999999988766
No 194
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.23 E-value=1.4e-10 Score=126.49 Aligned_cols=159 Identities=25% Similarity=0.396 Sum_probs=111.3
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM 286 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~ 286 (815)
+++++.+++++.|.+...+.++.++.. + ..+..+||+||||+|||++++++++.++..++.+++.+
T Consensus 13 ~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-- 78 (316)
T PHA02544 13 QKYRPSTIDECILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-- 78 (316)
T ss_pred eccCCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--
Confidence 467888999999999999999888752 1 22456777999999999999999999988888888865
Q ss_pred hhhhchhHHHHHHHHHHH-HhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCC
Q 003503 287 SKLAGESESNLRKAFEEA-EKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID 365 (815)
Q Consensus 287 ~~~~g~~~~~l~~vf~~a-~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld 365 (815)
.. .......+....... ....+.+++|||+|.+... .....|...++... ..+.+|.++|.+..+.
T Consensus 79 ~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~----------~~~~~L~~~le~~~--~~~~~Ilt~n~~~~l~ 145 (316)
T PHA02544 79 CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA----------DAQRHLRSFMEAYS--KNCSFIITANNKNGII 145 (316)
T ss_pred cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH----------HHHHHHHHHHHhcC--CCceEEEEcCChhhch
Confidence 11 111112222221111 1135679999999877211 12234555565543 3456667889888999
Q ss_pred HHhhccCCcceEEEcCCCCHHHHHHHHHHH
Q 003503 366 PALRRFGRFDREIDIGVPDEVGRLEILRIH 395 (815)
Q Consensus 366 ~al~r~~rf~~~i~i~~p~~~~R~~il~~~ 395 (815)
+++++ |+ ..+.++.|+.+++..+++.+
T Consensus 146 ~~l~s--R~-~~i~~~~p~~~~~~~il~~~ 172 (316)
T PHA02544 146 EPLRS--RC-RVIDFGVPTKEEQIEMMKQM 172 (316)
T ss_pred HHHHh--hc-eEEEeCCCCHHHHHHHHHHH
Confidence 99998 66 46889999999998877654
No 195
>PRK08727 hypothetical protein; Validated
Probab=99.23 E-value=1.6e-10 Score=119.98 Aligned_cols=159 Identities=21% Similarity=0.268 Sum_probs=99.5
Q ss_pred cceEEeCCCCCChhHHHHHHHHHh---CCcEEEEeccchhhhccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCC
Q 003503 523 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGS 599 (815)
Q Consensus 523 ~gilL~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~ 599 (815)
..++|+||+|||||+|+++++..+ +...+.++..++. ..+..+++.... ..+|+|||++.+....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~l~~--~dlLiIDDi~~l~~~~-- 109 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--------GRLRDALEALEG--RSLVALDGLESIAGQR-- 109 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--------hhHHHHHHHHhc--CCEEEEeCcccccCCh--
Confidence 349999999999999999998775 3344555544432 233445555443 3599999999875321
Q ss_pred CCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCCC---CccccCCCCC--cceeeccCCCHHHHHHHHHHHhcc
Q 003503 600 STGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDII---DPALLRPGRL--DQLIYIPLPDEASRLQIFKACLRK 674 (815)
Q Consensus 600 ~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~l---d~allr~gRf--~~~i~~~~p~~~~r~~Il~~~l~~ 674 (815)
.....+-.+++.+ ...+.-+|+.+.+.|..+ ++++.+ || ..++.+++|+.+++.+|++.+...
T Consensus 110 -------~~~~~lf~l~n~~---~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~ 177 (233)
T PRK08727 110 -------EDEVALFDFHNRA---RAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQR 177 (233)
T ss_pred -------HHHHHHHHHHHHH---HHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHH
Confidence 1122222333333 223333555555566654 789987 86 578899999999999999987754
Q ss_pred CCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHH
Q 003503 675 SPIS-PDVDLSALARYTHGFSGADITEVCQRAC 706 (815)
Q Consensus 675 ~~~~-~~~~~~~la~~t~g~sg~di~~l~~~a~ 706 (815)
.++. ++.-+..|+++..| +.+.+.++++...
T Consensus 178 ~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~ 209 (233)
T PRK08727 178 RGLALDEAAIDWLLTHGER-ELAGLVALLDRLD 209 (233)
T ss_pred cCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 4433 22336777776553 3344444455433
No 196
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.23 E-value=9.2e-11 Score=133.50 Aligned_cols=189 Identities=22% Similarity=0.297 Sum_probs=132.9
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCC--------------
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-------------- 548 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~-------------- 548 (815)
.+.+|+++.|++.+++.|...+.. + ..+..+|||||+|+|||++|+++|..+..
T Consensus 9 RP~~fdeiiGqe~v~~~L~~~I~~-----------g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~ 76 (535)
T PRK08451 9 RPKHFDELIGQESVSKTLSLALDN-----------N-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQ 76 (535)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 456899999999999988877642 1 23455799999999999999999988631
Q ss_pred ----------cEEEEeccchhhhccCccHHHHHHHHHHHhh----CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHH
Q 003503 549 ----------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQ 614 (815)
Q Consensus 549 ----------~~i~v~~~~l~~~~~g~se~~i~~~F~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~ 614 (815)
.++.+++..- ..-..++.+.+.... ....|++|||+|.+. ....+.
T Consensus 77 C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt--------------~~A~NA 136 (535)
T PRK08451 77 CQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT--------------KEAFNA 136 (535)
T ss_pred HHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------------HHHHHH
Confidence 1233322110 113456666554332 234699999998873 345678
Q ss_pred HHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHcCCC
Q 003503 615 LLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGF 693 (815)
Q Consensus 615 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~t~g~ 693 (815)
||..|+.. ...+.+|.+|+.+..|.+++++ |. .+++|.+++.++....++..+++.++.- +..+..|++...|
T Consensus 137 LLK~LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G- 210 (535)
T PRK08451 137 LLKTLEEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG- 210 (535)
T ss_pred HHHHHhhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 88888865 3345566666777889899988 85 5899999999999999988887766542 2346667776554
Q ss_pred CHHHHHHHHHHHHHHH
Q 003503 694 SGADITEVCQRACKYA 709 (815)
Q Consensus 694 sg~di~~l~~~a~~~a 709 (815)
+.+++.+++..+..++
T Consensus 211 dlR~alnlLdqai~~~ 226 (535)
T PRK08451 211 SLRDTLTLLDQAIIYC 226 (535)
T ss_pred cHHHHHHHHHHHHHhc
Confidence 7788888887766554
No 197
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.23 E-value=3.9e-10 Score=128.41 Aligned_cols=194 Identities=21% Similarity=0.254 Sum_probs=131.4
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEE--------
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFF-------- 278 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i-------- 278 (815)
.++++-+|+++.|++..++.++..+.. -..+..+||+||+||||||+|+++|+.++....
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~ai~~------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~ 80 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYTILN------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIK 80 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcC
Confidence 357788999999999999988876653 123568999999999999999999998864211
Q ss_pred ----EEechhhhhh----------hhchhHHHHHHHHHHHHh----cCCcEEEecccccccCCCCCchhHHHHHHHHHHH
Q 003503 279 ----LINGPEIMSK----------LAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLL 340 (815)
Q Consensus 279 ----~v~~~~l~~~----------~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll 340 (815)
.-+|..+... ........++.+++.+.. ....++||||++.+.. ...+.|+
T Consensus 81 ~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~-----------~a~naLL 149 (507)
T PRK06645 81 TCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK-----------GAFNALL 149 (507)
T ss_pred CCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH-----------HHHHHHH
Confidence 0111111110 011234556777776643 2346999999998742 2345667
Q ss_pred HhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhhHHHhhcCCCcH
Q 003503 341 TLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYVG 419 (815)
Q Consensus 341 ~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~ 419 (815)
..++.. ...+++|.+|+.++.+.+.+++ |+ ..+++..++.++...+++..++...+. ++..+..++..+.| +.
T Consensus 150 k~LEep--p~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-sl 223 (507)
T PRK06645 150 KTLEEP--PPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-SA 223 (507)
T ss_pred HHHhhc--CCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 666643 3456666677888889888887 55 568899999999999988777654432 33456778887776 44
Q ss_pred HHHHHHHHHH
Q 003503 420 SDLAALCTEA 429 (815)
Q Consensus 420 ~dl~~l~~~a 429 (815)
+++..++..+
T Consensus 224 R~al~~Ldka 233 (507)
T PRK06645 224 RDAVSILDQA 233 (507)
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 198
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=5.6e-11 Score=133.25 Aligned_cols=188 Identities=19% Similarity=0.263 Sum_probs=125.1
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCc-------------
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------------- 549 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~------------- 549 (815)
.+.+|++|.|++.+++.|+..+.. + ..+..+||+||||+|||++|+++|..+...
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~-----------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~ 78 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRM-----------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT 78 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHh-----------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC
Confidence 456799999999999988776542 1 345569999999999999999999987542
Q ss_pred -------------------EEEEeccchhhhccCccHHHHHHHHHHHh----hCCCeEEEEecchhhhhccCCCCCCCCc
Q 003503 550 -------------------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSTGDAGG 606 (815)
Q Consensus 550 -------------------~i~v~~~~l~~~~~g~se~~i~~~F~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~ 606 (815)
++.+++.+. .....++.+.+.+. .....|+|+||+|.+..
T Consensus 79 ~~c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~----------- 141 (397)
T PRK14955 79 EPCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI----------- 141 (397)
T ss_pred CCCCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH-----------
Confidence 222222110 11345555555442 22346999999999732
Q ss_pred hHHHHHHHHHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCC-CcccHHH
Q 003503 607 AADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSA 685 (815)
Q Consensus 607 ~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~ 685 (815)
...+.||..|+.. ....++|.+|+.+..+-+++.+ |+. ++.|++++.++..+.++..+++.++. ++..+..
T Consensus 142 ---~~~~~LLk~LEep--~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~ 213 (397)
T PRK14955 142 ---AAFNAFLKTLEEP--PPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQL 213 (397)
T ss_pred ---HHHHHHHHHHhcC--CCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 2356677777743 2344555566666777778876 764 78999999999888888888765543 2233666
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHH
Q 003503 686 LARYTHGFSGADITEVCQRACKY 708 (815)
Q Consensus 686 la~~t~g~sg~di~~l~~~a~~~ 708 (815)
|++.+.| +.+.+.+.+..+..+
T Consensus 214 l~~~s~g-~lr~a~~~L~kl~~~ 235 (397)
T PRK14955 214 IGRKAQG-SMRDAQSILDQVIAF 235 (397)
T ss_pred HHHHcCC-CHHHHHHHHHHHHHh
Confidence 7766654 556666666554443
No 199
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.22 E-value=6.6e-10 Score=123.87 Aligned_cols=201 Identities=22% Similarity=0.327 Sum_probs=123.3
Q ss_pred ccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC---------CeEEEEechhh
Q 003503 215 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG---------AFFFLINGPEI 285 (815)
Q Consensus 215 ~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~---------~~~i~v~~~~l 285 (815)
+++.|-+++++.|...+.-.+. + ..+.+++|+||||||||++++.++..+. ..++.++|...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 4689999999999887753211 1 3356799999999999999999987653 45788887543
Q ss_pred hh----------hhh--c--------hhHHHHHHHHHHHH-hcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhh
Q 003503 286 MS----------KLA--G--------ESESNLRKAFEEAE-KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMD 344 (815)
Q Consensus 286 ~~----------~~~--g--------~~~~~l~~vf~~a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld 344 (815)
.+ ... + .....+..+++... ...+.+|+|||+|.+.... ..+..+|+.+.+
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~--------~~~L~~l~~~~~ 157 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD--------DDLLYQLSRARS 157 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC--------cHHHHhHhcccc
Confidence 21 110 1 01222344444443 2456789999999997321 123444544421
Q ss_pred cc-cCCCcEEEEEecCCCC---CCCHHhhccCCcc-eEEEcCCCCHHHHHHHHHHHhcC-C--ccccchhhhH---HHhh
Q 003503 345 GL-KSRAHVIVMGATNRPN---SIDPALRRFGRFD-REIDIGVPDEVGRLEILRIHTKN-M--KLAEDVDLER---VAKD 413 (815)
Q Consensus 345 ~~-~~~~~vivi~atn~~~---~ld~al~r~~rf~-~~i~i~~p~~~~R~~il~~~~~~-~--~l~~~~~l~~---la~~ 413 (815)
.. ....++.+|+++|.++ .+++.+.+ ||. ..+.+++++.++..+|++..... . ...++..+.. ++..
T Consensus 158 ~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~ 235 (365)
T TIGR02928 158 NGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQ 235 (365)
T ss_pred ccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHH
Confidence 11 1235788888888875 46777765 554 67899999999999999987652 1 1112222223 3334
Q ss_pred cCCCcHHHHHHHHHHHHHHhHH
Q 003503 414 THGYVGSDLAALCTEAALQCIR 435 (815)
Q Consensus 414 t~g~~~~dl~~l~~~a~~~~~~ 435 (815)
+.|... ....+|+.|+..+..
T Consensus 236 ~~Gd~R-~al~~l~~a~~~a~~ 256 (365)
T TIGR02928 236 EHGDAR-KAIDLLRVAGEIAER 256 (365)
T ss_pred hcCCHH-HHHHHHHHHHHHHHH
Confidence 455433 334456666554443
No 200
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.22 E-value=1.9e-10 Score=131.41 Aligned_cols=155 Identities=23% Similarity=0.411 Sum_probs=104.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh-----CCeEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCC
Q 003503 250 KGILLYGPPGSGKTLIARAVANET-----GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKR 324 (815)
Q Consensus 250 ~~VLL~GppGtGKTtLar~la~~l-----~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~ 324 (815)
..++||||||||||+|++++++++ +..++++++.++...+..........-|.+.. ..+++|+|||++.+..+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKY-RSVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHH-hcCCEEEEehhhhhcCCH
Confidence 569999999999999999999987 45688899887765543332211112232222 247799999999986442
Q ss_pred CCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCC---CCHHhhccCCcc--eEEEcCCCCHHHHHHHHHHHhcCC
Q 003503 325 EKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNS---IDPALRRFGRFD--REIDIGVPDEVGRLEILRIHTKNM 399 (815)
Q Consensus 325 ~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~---ld~al~r~~rf~--~~i~i~~p~~~~R~~il~~~~~~~ 399 (815)
. ....|+..++.+......++++++..|.. +++.+++ ||. ..+++..|+.+.|..|++..+...
T Consensus 228 ~---------~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~ 296 (450)
T PRK00149 228 R---------TQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEE 296 (450)
T ss_pred H---------HHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHc
Confidence 1 22344555554444445566666666654 5678887 664 578999999999999999887643
Q ss_pred --ccccchhhhHHHhhcCCC
Q 003503 400 --KLAEDVDLERVAKDTHGY 417 (815)
Q Consensus 400 --~l~~~~~l~~la~~t~g~ 417 (815)
.+.+ ..+..++....|-
T Consensus 297 ~~~l~~-e~l~~ia~~~~~~ 315 (450)
T PRK00149 297 GIDLPD-EVLEFIAKNITSN 315 (450)
T ss_pred CCCCCH-HHHHHHHcCcCCC
Confidence 3433 3477787776654
No 201
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=3.5e-10 Score=132.33 Aligned_cols=184 Identities=20% Similarity=0.281 Sum_probs=128.6
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCc-------------
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------------- 549 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~------------- 549 (815)
....|+++.|++.+++.|...+... +...++||+||+|+|||++|+++|..+...
T Consensus 11 RP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C 78 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKC 78 (620)
T ss_pred CCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCccc
Confidence 4567999999999999988776531 123569999999999999999999997542
Q ss_pred -------------EEEEeccchhhhccCccHHHHHHHHHHHhhC----CCeEEEEecchhhhhccCCCCCCCCchHHHHH
Q 003503 550 -------------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSTGDAGGAADRVL 612 (815)
Q Consensus 550 -------------~i~v~~~~l~~~~~g~se~~i~~~F~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl 612 (815)
++.++. ..+.....++++...+... ...|+||||+|.+- ....
T Consensus 79 ~~C~~i~~g~h~D~~ei~~------~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt--------------~~a~ 138 (620)
T PRK14948 79 ELCRAIAAGNALDVIEIDA------ASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS--------------TAAF 138 (620)
T ss_pred HHHHHHhcCCCccEEEEec------cccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC--------------HHHH
Confidence 222221 1123345788888776532 34699999999873 2356
Q ss_pred HHHHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHcC
Q 003503 613 NQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTH 691 (815)
Q Consensus 613 ~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~t~ 691 (815)
+.||..|+. ....+++|++|+.++.+-+.+.+ |+ ..+.|+.++.++....+...+.+.++.- +..+..+++.+.
T Consensus 139 naLLK~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~ 213 (620)
T PRK14948 139 NALLKTLEE--PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQ 213 (620)
T ss_pred HHHHHHHhc--CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Confidence 888998884 34456777777778888888887 77 4788999988888877777776654332 233667777665
Q ss_pred CCCHHHHHHHHHH
Q 003503 692 GFSGADITEVCQR 704 (815)
Q Consensus 692 g~sg~di~~l~~~ 704 (815)
| +.+++.++++.
T Consensus 214 G-~lr~A~~lLek 225 (620)
T PRK14948 214 G-GLRDAESLLDQ 225 (620)
T ss_pred C-CHHHHHHHHHH
Confidence 4 33555555544
No 202
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=3.6e-10 Score=127.59 Aligned_cols=189 Identities=21% Similarity=0.264 Sum_probs=129.8
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-----------
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA----------- 275 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~----------- 275 (815)
.++++.+|+|+.|++..++.++.++.. + ..+..+||+||+|+||||+|+.+|+.++.
T Consensus 5 ~KyRP~~f~dliGQe~vv~~L~~a~~~-----------~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~ 72 (491)
T PRK14964 5 LKYRPSSFKDLVGQDVLVRILRNAFTL-----------N-KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGT 72 (491)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccc
Confidence 356788999999999999998877653 1 23568999999999999999999987632
Q ss_pred -------------eEEEEechhhhhhhhchhHHHHHHHHHHHHh----cCCcEEEecccccccCCCCCchhHHHHHHHHH
Q 003503 276 -------------FFFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 338 (815)
Q Consensus 276 -------------~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 338 (815)
.++.+++.+ ...-..++.+.+.+.. ....+++|||+|.+.. ...+.
T Consensus 73 C~~C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~-----------~A~Na 135 (491)
T PRK14964 73 CHNCISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN-----------SAFNA 135 (491)
T ss_pred cHHHHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH-----------HHHHH
Confidence 234444421 1123456666666532 3346999999998742 23566
Q ss_pred HHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhhHHHhhcCCC
Q 003503 339 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 417 (815)
Q Consensus 339 Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~ 417 (815)
|+..++... ..+.+|.+|+.++.+.+.+++ |+ ..+++..++.++....+...+....+. ++..+..++..+.|
T Consensus 136 LLK~LEePp--~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G- 209 (491)
T PRK14964 136 LLKTLEEPA--PHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG- 209 (491)
T ss_pred HHHHHhCCC--CCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 777777543 356666677888889888887 55 558899899888888887766544332 33456777777765
Q ss_pred cHHHHHHHHHHHH
Q 003503 418 VGSDLAALCTEAA 430 (815)
Q Consensus 418 ~~~dl~~l~~~a~ 430 (815)
+.+++..++..+.
T Consensus 210 slR~alslLdqli 222 (491)
T PRK14964 210 SMRNALFLLEQAA 222 (491)
T ss_pred CHHHHHHHHHHHH
Confidence 4455555555443
No 203
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.21 E-value=5.3e-10 Score=124.57 Aligned_cols=218 Identities=26% Similarity=0.317 Sum_probs=133.0
Q ss_pred cccChHHHHHHHHHHHHcccCChhhHhhh--CC-CCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh-hhhc
Q 003503 216 DVGGVRKQMAQIRELVELPLRHPQLFKSI--GV-KPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS-KLAG 291 (815)
Q Consensus 216 ~i~G~~~~~~~i~~~v~~~l~~~~~~~~l--~i-~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~-~~~g 291 (815)
.|.|++..++.+...+...+.+-...... .+ .+..++||+||||||||++|++||..++.+++.+++..+.. .|.|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 38999999998876664322211000000 11 24578999999999999999999999999999999887653 4666
Q ss_pred hhH-HHHHHHHHH----HHhcCCcEEEecccccccCCCCCch---hHHHHHHHHHHHHhhhccc-----------CCCcE
Q 003503 292 ESE-SNLRKAFEE----AEKNAPSIIFIDELDSIAPKREKTH---GEVERRIVSQLLTLMDGLK-----------SRAHV 352 (815)
Q Consensus 292 ~~~-~~l~~vf~~----a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~v~~~Ll~~ld~~~-----------~~~~v 352 (815)
... ..+..+++. .....+++|||||||.+......+. +.....+...|+.+|++-. .....
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~ 231 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEF 231 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCe
Confidence 533 334444443 2334678999999999987633221 1112346788888887531 01234
Q ss_pred EEEEecCCCC-------C---------------------------------------------CCHHhhccCCcceEEEc
Q 003503 353 IVMGATNRPN-------S---------------------------------------------IDPALRRFGRFDREIDI 380 (815)
Q Consensus 353 ivi~atn~~~-------~---------------------------------------------ld~al~r~~rf~~~i~i 380 (815)
++|.|+|-.. . +.|++ .+|++..+.+
T Consensus 232 ~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEf--lgRld~iv~f 309 (412)
T PRK05342 232 IQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEF--IGRLPVVATL 309 (412)
T ss_pred EEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHH--hCCCCeeeec
Confidence 4555544310 0 11222 2688888999
Q ss_pred CCCCHHHHHHHHHH----Hhc---------CCccc-cchhhhHHHhh--cCCCcHHHHHHHHHHHHHHhHH
Q 003503 381 GVPDEVGRLEILRI----HTK---------NMKLA-EDVDLERVAKD--THGYVGSDLAALCTEAALQCIR 435 (815)
Q Consensus 381 ~~p~~~~R~~il~~----~~~---------~~~l~-~~~~l~~la~~--t~g~~~~dl~~l~~~a~~~~~~ 435 (815)
...+.+...+|+.. ..+ ++.+. .+.-+..+++. ...+-.+.+..++.......+.
T Consensus 310 ~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~ 380 (412)
T PRK05342 310 EELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMF 380 (412)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHH
Confidence 99999999888862 221 12221 22334566654 3455566677766665554443
No 204
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.21 E-value=4.9e-10 Score=126.26 Aligned_cols=202 Identities=21% Similarity=0.277 Sum_probs=123.8
Q ss_pred cccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh-----CCeEEEEechhhh--
Q 003503 214 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-----GAFFFLINGPEIM-- 286 (815)
Q Consensus 214 ~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l-----~~~~i~v~~~~l~-- 286 (815)
.+.+.|-++++++|...+.-.+. -..+.+++|+||||||||++++.+++.+ +..++.++|....
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~---------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~ 99 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALR---------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTR 99 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhC---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCH
Confidence 35588899999998877753111 1345679999999999999999999876 4567888885321
Q ss_pred --------hhhhc--------hhHHHHHHHHHHHHh-cCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCC
Q 003503 287 --------SKLAG--------ESESNLRKAFEEAEK-NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSR 349 (815)
Q Consensus 287 --------~~~~g--------~~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~ 349 (815)
....+ .....+..+.+.... ..+.+|+|||+|.+....+ ...+..|+.+++... .
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~-------~~~l~~l~~~~~~~~-~ 171 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG-------NDVLYSLLRAHEEYP-G 171 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC-------chHHHHHHHhhhccC-C
Confidence 11111 112223333333332 3567899999999872211 123455555554432 2
Q ss_pred CcEEEEEecCCCC---CCCHHhhccCCc-ceEEEcCCCCHHHHHHHHHHHhcCC---ccccchhhhHHHhhcCCCc--HH
Q 003503 350 AHVIVMGATNRPN---SIDPALRRFGRF-DREIDIGVPDEVGRLEILRIHTKNM---KLAEDVDLERVAKDTHGYV--GS 420 (815)
Q Consensus 350 ~~vivi~atn~~~---~ld~al~r~~rf-~~~i~i~~p~~~~R~~il~~~~~~~---~l~~~~~l~~la~~t~g~~--~~ 420 (815)
.++.+|+++|..+ .+++.+++ || ...+.+++++.++..+|++.+++.. ....+..+..+++.+.+.. .+
T Consensus 172 ~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r 249 (394)
T PRK00411 172 ARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDAR 249 (394)
T ss_pred CeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHH
Confidence 3677777777654 46677665 44 3578999999999999998776431 1223334566666663322 23
Q ss_pred HHHHHHHHHHHHhH
Q 003503 421 DLAALCTEAALQCI 434 (815)
Q Consensus 421 dl~~l~~~a~~~~~ 434 (815)
....++..|+..+.
T Consensus 250 ~a~~ll~~a~~~a~ 263 (394)
T PRK00411 250 VAIDLLRRAGLIAE 263 (394)
T ss_pred HHHHHHHHHHHHHH
Confidence 33455666554443
No 205
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.21 E-value=2e-10 Score=129.63 Aligned_cols=167 Identities=25% Similarity=0.398 Sum_probs=107.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh-----CCeEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCcEEEecccccccCC
Q 003503 249 PKGILLYGPPGSGKTLIARAVANET-----GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPK 323 (815)
Q Consensus 249 ~~~VLL~GppGtGKTtLar~la~~l-----~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~ 323 (815)
...++||||+|+|||+|++++++++ +..++++++.++...............|.... ..+++|+|||++.+..+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKY-RSVDLLLIDDIQFLAGK 214 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHH-HhCCEEEEehhhhhcCC
Confidence 3569999999999999999999886 46788899877665433221111111122221 23679999999998654
Q ss_pred CCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCC---CCHHhhccCCcc--eEEEcCCCCHHHHHHHHHHHhcC
Q 003503 324 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNS---IDPALRRFGRFD--REIDIGVPDEVGRLEILRIHTKN 398 (815)
Q Consensus 324 ~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~---ld~al~r~~rf~--~~i~i~~p~~~~R~~il~~~~~~ 398 (815)
. .....|+..++.+......+|++++..|.. +++.+++ ||. ..+.+..|+.+.|..|++..+..
T Consensus 215 ~---------~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 215 E---------RTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred H---------HHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 2 112334555554434445566666666654 4567776 664 57899999999999999988765
Q ss_pred Cccc-cchhhhHHHhhcCCCcHHHHHHHHHH
Q 003503 399 MKLA-EDVDLERVAKDTHGYVGSDLAALCTE 428 (815)
Q Consensus 399 ~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~ 428 (815)
..+. ++..+..++....+- .+++...+..
T Consensus 284 ~~~~l~~e~l~~ia~~~~~~-~r~l~~~l~~ 313 (405)
T TIGR00362 284 EGLELPDEVLEFIAKNIRSN-VRELEGALNR 313 (405)
T ss_pred cCCCCCHHHHHHHHHhcCCC-HHHHHHHHHH
Confidence 4432 344577788776653 3444444443
No 206
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=2.4e-10 Score=130.98 Aligned_cols=188 Identities=16% Similarity=0.229 Sum_probs=125.8
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe----------
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 276 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~---------- 276 (815)
.++++-+|+++.|.+..++.|+.++... ..+..+||+||+|+||||+|+++|+.++..
T Consensus 8 ~kyRP~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~ 75 (509)
T PRK14958 8 RKWRPRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCND 75 (509)
T ss_pred HHHCCCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCC
Confidence 4678889999999999999998888631 224468999999999999999999988542
Q ss_pred --------------EEEEechhhhhhhhchhHHHHHHHHHHHH----hcCCcEEEecccccccCCCCCchhHHHHHHHHH
Q 003503 277 --------------FFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 338 (815)
Q Consensus 277 --------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 338 (815)
++.+++.. ...-..++.+..... .....|+||||+|.+.. ...+.
T Consensus 76 C~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~-----------~a~na 138 (509)
T PRK14958 76 CENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG-----------HSFNA 138 (509)
T ss_pred CHHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH-----------HHHHH
Confidence 33333321 122334555555433 23346999999998853 23466
Q ss_pred HHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhhHHHhhcCCC
Q 003503 339 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 417 (815)
Q Consensus 339 Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~ 417 (815)
|+..|+... ..+.+|.+|+++..+.+.+++ |+ ..+++..++..+-...++..++...+. ++..+..++....|
T Consensus 139 LLk~LEepp--~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G- 212 (509)
T PRK14958 139 LLKTLEEPP--SHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG- 212 (509)
T ss_pred HHHHHhccC--CCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 777777543 346666677888888888877 54 456788777777666666555443332 23346677777655
Q ss_pred cHHHHHHHHHHH
Q 003503 418 VGSDLAALCTEA 429 (815)
Q Consensus 418 ~~~dl~~l~~~a 429 (815)
+.+++..++..+
T Consensus 213 slR~al~lLdq~ 224 (509)
T PRK14958 213 SVRDALSLLDQS 224 (509)
T ss_pred cHHHHHHHHHHH
Confidence 455666665544
No 207
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=3.8e-10 Score=123.91 Aligned_cols=177 Identities=24% Similarity=0.372 Sum_probs=120.9
Q ss_pred CcceEEeCCCCCChhHHHHHHHHHhCCc-----EEEEeccchhhhc---------------cCcc-HHHHHHHHHHHhh-
Q 003503 522 SKGVLFYGPPGCGKTLLAKAIANECQAN-----FISVKGPELLTMW---------------FGES-EANVREIFDKARQ- 579 (815)
Q Consensus 522 ~~gilL~GppGtGKT~lakala~~~~~~-----~i~v~~~~l~~~~---------------~g~s-e~~i~~~F~~a~~- 579 (815)
+.++++|||||||||.+++.++.++... +++|++..+-+.| .|.+ .+....+++....
T Consensus 42 p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~ 121 (366)
T COG1474 42 PSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKK 121 (366)
T ss_pred CccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhc
Confidence 4459999999999999999999998544 7899987664432 1222 2223334444333
Q ss_pred CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCC---CCCccccCCCCCc-ceee
Q 003503 580 SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPD---IIDPALLRPGRLD-QLIY 655 (815)
Q Consensus 580 ~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~---~ld~allr~gRf~-~~i~ 655 (815)
...-|+++||+|.|..+.+ .++..|+...+.. ..++.||+.+|..+ .+||.+.+ ||. ..|.
T Consensus 122 ~~~~IvvLDEid~L~~~~~-----------~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~ 186 (366)
T COG1474 122 GKTVIVILDEVDALVDKDG-----------EVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIV 186 (366)
T ss_pred CCeEEEEEcchhhhccccc-----------hHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceee
Confidence 3456999999999976421 5777777766544 56789999999874 57888876 553 5589
Q ss_pred ccCCCHHHHHHHHHHHhccC---CCCCcccHHHHHHHcCCC--CHHHHHHHHHHHHHHHHHHH
Q 003503 656 IPLPDEASRLQIFKACLRKS---PISPDVDLSALARYTHGF--SGADITEVCQRACKYAIREN 713 (815)
Q Consensus 656 ~~~p~~~~r~~Il~~~l~~~---~~~~~~~~~~la~~t~g~--sg~di~~l~~~a~~~a~~~~ 713 (815)
||+++.+|...|++...+.. +.-.+--++.+|...... +.+--..+|+.|+..|-++.
T Consensus 187 F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~ 249 (366)
T COG1474 187 FPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREG 249 (366)
T ss_pred eCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999888643 111222244444333222 34445578999999888664
No 208
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=4.1e-10 Score=131.01 Aligned_cols=189 Identities=18% Similarity=0.251 Sum_probs=127.6
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCc-------------
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------------- 549 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~------------- 549 (815)
...+|++|.|++.+++.|+..+.. -..+.++||+||+||||||+|+++|..+...
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i~~------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSLRM------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 456799999999999988776542 1344569999999999999999999988542
Q ss_pred -------------------EEEEeccchhhhccCccHHHHHHHHHHH----hhCCCeEEEEecchhhhhccCCCCCCCCc
Q 003503 550 -------------------FISVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSTGDAGG 606 (815)
Q Consensus 550 -------------------~i~v~~~~l~~~~~g~se~~i~~~F~~a----~~~~p~ilfiDEid~l~~~r~~~~~~~~~ 606 (815)
++.+++... .....|+.+-+.+ ......|++|||+|.+..
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~~~d~~s~------~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~----------- 141 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST----------- 141 (620)
T ss_pred CCCccCHHHHHHhccCCCCeEEeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH-----------
Confidence 122221110 1134555555444 223457999999998732
Q ss_pred hHHHHHHHHHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCC-CcccHHH
Q 003503 607 AADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSA 685 (815)
Q Consensus 607 ~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~ 685 (815)
...+.||..|+... ..+++|.+|+.+..|-+.+.+ |. .++.|.+++.++....++..+++.++. ++..+..
T Consensus 142 ---~a~naLLK~LEePp--~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~ 213 (620)
T PRK14954 142 ---AAFNAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQL 213 (620)
T ss_pred ---HHHHHHHHHHhCCC--CCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 23677888888543 345555556667788888886 66 589999999999888888887765543 2334677
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHH
Q 003503 686 LARYTHGFSGADITEVCQRACKYA 709 (815)
Q Consensus 686 la~~t~g~sg~di~~l~~~a~~~a 709 (815)
|++.+.| +.+++.+.+.....++
T Consensus 214 La~~s~G-dlr~al~eLeKL~~y~ 236 (620)
T PRK14954 214 IARKAQG-SMRDAQSILDQVIAFS 236 (620)
T ss_pred HHHHhCC-CHHHHHHHHHHHHHhc
Confidence 7776654 5556656555544443
No 209
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.21 E-value=3.4e-10 Score=130.80 Aligned_cols=189 Identities=20% Similarity=0.264 Sum_probs=128.5
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeE---------
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF--------- 277 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~--------- 277 (815)
.++++-+|++|.|.+..++.|+.++... ..+..+||+||+|+||||+|+++|+.++...
T Consensus 8 rKYRP~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~ 75 (709)
T PRK08691 8 RKWRPKTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGV 75 (709)
T ss_pred HHhCCCCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcc
Confidence 4678889999999999999998887641 2356799999999999999999999875421
Q ss_pred ---------------EEEechhhhhhhhchhHHHHHHHHHHHH----hcCCcEEEecccccccCCCCCchhHHHHHHHHH
Q 003503 278 ---------------FLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 338 (815)
Q Consensus 278 ---------------i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 338 (815)
+.+++. .......++.++..+. .....|+||||+|.+. ....+.
T Consensus 76 C~sCr~i~~g~~~DvlEidaA------s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls-----------~~A~NA 138 (709)
T PRK08691 76 CQSCTQIDAGRYVDLLEIDAA------SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS-----------KSAFNA 138 (709)
T ss_pred cHHHHHHhccCccceEEEecc------ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC-----------HHHHHH
Confidence 122211 1122345666666542 2344699999998763 223466
Q ss_pred HHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhhHHHhhcCCC
Q 003503 339 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 417 (815)
Q Consensus 339 Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~ 417 (815)
|+..|+... ..+.+|.+|+.+..+.+.+++ |+ ..+.+..++.++-...|+..++...+. ++..+..++....|
T Consensus 139 LLKtLEEPp--~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G- 212 (709)
T PRK08691 139 MLKTLEEPP--EHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG- 212 (709)
T ss_pred HHHHHHhCC--CCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-
Confidence 777777533 356666677888888888875 65 557788888888888887766654432 23346677776654
Q ss_pred cHHHHHHHHHHHH
Q 003503 418 VGSDLAALCTEAA 430 (815)
Q Consensus 418 ~~~dl~~l~~~a~ 430 (815)
+.+++..++..+.
T Consensus 213 slRdAlnLLDqai 225 (709)
T PRK08691 213 SMRDALSLLDQAI 225 (709)
T ss_pred CHHHHHHHHHHHH
Confidence 4555555655443
No 210
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.20 E-value=8.5e-11 Score=128.00 Aligned_cols=176 Identities=28% Similarity=0.446 Sum_probs=120.3
Q ss_pred cccChHHHHHHHHHHHHcccCChhhHhhhC-CCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh-hhhc-h
Q 003503 216 DVGGVRKQMAQIRELVELPLRHPQLFKSIG-VKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS-KLAG-E 292 (815)
Q Consensus 216 ~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~-i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~-~~~g-~ 292 (815)
.|.|+++.++.+..++...+++..+...+. -.++++|||+||||||||+++++||+.++.+++.+++..+.. .|.| +
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 489999999998777665433332222111 234689999999999999999999999999999998766542 4444 3
Q ss_pred hHHHHHHHHHHH--------------------------------------------------------------------
Q 003503 293 SESNLRKAFEEA-------------------------------------------------------------------- 304 (815)
Q Consensus 293 ~~~~l~~vf~~a-------------------------------------------------------------------- 304 (815)
.+..++.+|+.+
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 444444444333
Q ss_pred -----------------------------------------------------------------------HhcCCcEEE
Q 003503 305 -----------------------------------------------------------------------EKNAPSIIF 313 (815)
Q Consensus 305 -----------------------------------------------------------------------~~~~p~il~ 313 (815)
......|+|
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 012446999
Q ss_pred ecccccccCCCCCchhHH-HHHHHHHHHHhhhccc--------CCCcEEEEEec----CCCCCCCHHhhccCCcceEEEc
Q 003503 314 IDELDSIAPKREKTHGEV-ERRIVSQLLTLMDGLK--------SRAHVIVMGAT----NRPNSIDPALRRFGRFDREIDI 380 (815)
Q Consensus 314 iDEid~l~~~~~~~~~~~-~~~v~~~Ll~~ld~~~--------~~~~vivi~at----n~~~~ld~al~r~~rf~~~i~i 380 (815)
|||||.++.+......++ ..-+...|+.+++|-. ...++++|++- ..|.++-|.|. |||...+.+
T Consensus 253 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L 330 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRVEL 330 (441)
T ss_pred EEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEEC
Confidence 999999997653222222 2346677888887632 12456666432 24556667776 599999999
Q ss_pred CCCCHHHHHHHHH
Q 003503 381 GVPDEVGRLEILR 393 (815)
Q Consensus 381 ~~p~~~~R~~il~ 393 (815)
..++.++..+||.
T Consensus 331 ~~L~~edL~rILt 343 (441)
T TIGR00390 331 QALTTDDFERILT 343 (441)
T ss_pred CCCCHHHHHHHhc
Confidence 9999999999984
No 211
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.20 E-value=8.4e-10 Score=121.57 Aligned_cols=181 Identities=22% Similarity=0.315 Sum_probs=117.4
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC-----CeEEEEe
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG-----AFFFLIN 281 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~-----~~~i~v~ 281 (815)
+++.+.+|+++.|.+..++.+.+++.. ....+++|+||||||||++|+++++.+. ..++.++
T Consensus 7 ~ky~P~~~~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~ 73 (337)
T PRK12402 7 EKYRPALLEDILGQDEVVERLSRAVDS-------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN 73 (337)
T ss_pred HhhCCCcHHHhcCCHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec
Confidence 456788899999999999999887753 1123699999999999999999999874 2357778
Q ss_pred chhhhhhhh-------------ch-------hHHHHHHHHHHHHh-----cCCcEEEecccccccCCCCCchhHHHHHHH
Q 003503 282 GPEIMSKLA-------------GE-------SESNLRKAFEEAEK-----NAPSIIFIDELDSIAPKREKTHGEVERRIV 336 (815)
Q Consensus 282 ~~~l~~~~~-------------g~-------~~~~l~~vf~~a~~-----~~p~il~iDEid~l~~~~~~~~~~~~~~v~ 336 (815)
+.++..... +. ....++.+.+.... ..+.++++||++.+.+ ...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~-----------~~~ 142 (337)
T PRK12402 74 VADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE-----------DAQ 142 (337)
T ss_pred hhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH-----------HHH
Confidence 766532210 00 11223333333322 2346999999997742 123
Q ss_pred HHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhhHHHhhcC
Q 003503 337 SQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTH 415 (815)
Q Consensus 337 ~~Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~ 415 (815)
..|...++..... ..+|.+++.+..+.+.+++ |+ ..+.+.+|+.++...+++..++...+. ++..+..++..+.
T Consensus 143 ~~L~~~le~~~~~--~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~ 217 (337)
T PRK12402 143 QALRRIMEQYSRT--CRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAG 217 (337)
T ss_pred HHHHHHHHhccCC--CeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 4566666654333 2333455556667777776 54 568899999999999988776544432 3345667777664
Q ss_pred C
Q 003503 416 G 416 (815)
Q Consensus 416 g 416 (815)
|
T Consensus 218 g 218 (337)
T PRK12402 218 G 218 (337)
T ss_pred C
Confidence 3
No 212
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.20 E-value=1.6e-10 Score=134.26 Aligned_cols=191 Identities=20% Similarity=0.224 Sum_probs=129.2
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEe--------
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVK-------- 554 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~-------- 554 (815)
...+|++|.|++.+++.|...+.. + +.+.++||+||+|+|||++|+++|+.+........
T Consensus 19 RP~~f~dliGq~~~v~~L~~~~~~-----------g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c 86 (598)
T PRK09111 19 RPQTFDDLIGQEAMVRTLTNAFET-----------G-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC 86 (598)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC
Confidence 456899999999999999877653 1 33567999999999999999999998754321111
Q ss_pred -------------ccchhhhcc--CccHHHHHHHHHHHhhC----CCeEEEEecchhhhhccCCCCCCCCchHHHHHHHH
Q 003503 555 -------------GPELLTMWF--GESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQL 615 (815)
Q Consensus 555 -------------~~~l~~~~~--g~se~~i~~~F~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~l 615 (815)
.++++.... .-.-..|+++.+.++.. ...|+||||+|.+. ....+.|
T Consensus 87 g~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls--------------~~a~naL 152 (598)
T PRK09111 87 GVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS--------------TAAFNAL 152 (598)
T ss_pred cccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC--------------HHHHHHH
Confidence 011110000 01134577777766543 35799999999973 2346788
Q ss_pred HhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHcCCCC
Q 003503 616 LTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGFS 694 (815)
Q Consensus 616 L~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~t~g~s 694 (815)
|..|+... ..+++|.+|+.++.+-+.+++ |+ .++.|..++.++....++..+++.++.-+ ..+..|++.+.| +
T Consensus 153 LKtLEePp--~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-d 226 (598)
T PRK09111 153 LKTLEEPP--PHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-S 226 (598)
T ss_pred HHHHHhCC--CCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 88888543 345666666777777777776 77 48999999999999999998877665433 234555665543 5
Q ss_pred HHHHHHHHHHH
Q 003503 695 GADITEVCQRA 705 (815)
Q Consensus 695 g~di~~l~~~a 705 (815)
.+++.+++..+
T Consensus 227 lr~al~~Ldkl 237 (598)
T PRK09111 227 VRDGLSLLDQA 237 (598)
T ss_pred HHHHHHHHHHH
Confidence 66665555444
No 213
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.19 E-value=8.2e-11 Score=128.20 Aligned_cols=176 Identities=28% Similarity=0.439 Sum_probs=120.6
Q ss_pred cccChHHHHHHHHHHHHcccCChhhHhhhCC-CCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh-hhhc-h
Q 003503 216 DVGGVRKQMAQIRELVELPLRHPQLFKSIGV-KPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS-KLAG-E 292 (815)
Q Consensus 216 ~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i-~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~-~~~g-~ 292 (815)
.|.|+++.++.+..++...+++..+...+.. ..+.++||+||||||||++|++||+.++.+++.+++..+.. .|.| +
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 3999999999997777543322222111111 13588999999999999999999999999999999876653 4555 3
Q ss_pred hHHHHHHHHHHHH-------------------------------------------------------------------
Q 003503 293 SESNLRKAFEEAE------------------------------------------------------------------- 305 (815)
Q Consensus 293 ~~~~l~~vf~~a~------------------------------------------------------------------- 305 (815)
.+..++.+|+.|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 3444444444440
Q ss_pred -----------------------------------------------------------------------hcCCcEEEe
Q 003503 306 -----------------------------------------------------------------------KNAPSIIFI 314 (815)
Q Consensus 306 -----------------------------------------------------------------------~~~p~il~i 314 (815)
...-.|+||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 013469999
Q ss_pred cccccccCCCCCchhHH-HHHHHHHHHHhhhccc--------CCCcEEEEEec----CCCCCCCHHhhccCCcceEEEcC
Q 003503 315 DELDSIAPKREKTHGEV-ERRIVSQLLTLMDGLK--------SRAHVIVMGAT----NRPNSIDPALRRFGRFDREIDIG 381 (815)
Q Consensus 315 DEid~l~~~~~~~~~~~-~~~v~~~Ll~~ld~~~--------~~~~vivi~at----n~~~~ld~al~r~~rf~~~i~i~ 381 (815)
||||.++...+....++ ..-+...|+.+++|-. ...++++|++- ..|.++-|.|. |||...+.+.
T Consensus 256 DEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L~ 333 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVELD 333 (443)
T ss_pred EcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEECC
Confidence 99999997653222222 2346677888888732 12456666421 34566667776 4999999999
Q ss_pred CCCHHHHHHHHH
Q 003503 382 VPDEVGRLEILR 393 (815)
Q Consensus 382 ~p~~~~R~~il~ 393 (815)
.++.+...+||.
T Consensus 334 ~L~~~dL~~ILt 345 (443)
T PRK05201 334 ALTEEDFVRILT 345 (443)
T ss_pred CCCHHHHHHHhc
Confidence 999999999984
No 214
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.19 E-value=4.8e-10 Score=134.38 Aligned_cols=186 Identities=19% Similarity=0.214 Sum_probs=123.1
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe----------
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 276 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~---------- 276 (815)
.++.+.+|++|.|++..++.|+.++... ..+..+||+||+||||||+|++||+.+.+.
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~~~------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~ 74 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALDSG------------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGE 74 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcc
Confidence 4678889999999999999998887631 123458999999999999999999998631
Q ss_pred ----------------EEEEechhhhhhhhchhHHHHHHHHHH----HHhcCCcEEEecccccccCCCCCchhHHHHHHH
Q 003503 277 ----------------FFLINGPEIMSKLAGESESNLRKAFEE----AEKNAPSIIFIDELDSIAPKREKTHGEVERRIV 336 (815)
Q Consensus 277 ----------------~i~v~~~~l~~~~~g~~~~~l~~vf~~----a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~ 336 (815)
++.+++... ..-..++.+.+. .......|+||||+|.|.. ...
T Consensus 75 C~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~-----------~a~ 137 (824)
T PRK07764 75 CDSCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP-----------QGF 137 (824)
T ss_pred cHHHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH-----------HHH
Confidence 222222110 012334444333 2334556999999999852 245
Q ss_pred HHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhhHHHhhcC
Q 003503 337 SQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTH 415 (815)
Q Consensus 337 ~~Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~ 415 (815)
+.|+..|+.... .+++|.+|+.++.|.+.+++ |+ ..+.|..+..+....+|...++...+. ++..+..++....
T Consensus 138 NaLLK~LEEpP~--~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sg 212 (824)
T PRK07764 138 NALLKIVEEPPE--HLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGG 212 (824)
T ss_pred HHHHHHHhCCCC--CeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 678888876433 56666677888888888887 54 567888888888888887766544433 2234555666665
Q ss_pred CCcHHHHHHHHH
Q 003503 416 GYVGSDLAALCT 427 (815)
Q Consensus 416 g~~~~dl~~l~~ 427 (815)
| ...++..++.
T Consensus 213 G-dlR~Al~eLE 223 (824)
T PRK07764 213 G-SVRDSLSVLD 223 (824)
T ss_pred C-CHHHHHHHHH
Confidence 5 3334333333
No 215
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=7.5e-10 Score=126.68 Aligned_cols=178 Identities=21% Similarity=0.283 Sum_probs=121.5
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe----------
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 276 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~---------- 276 (815)
.++.+.+|+++.|++..++.|+.++... ..+..+||+|||||||||+|+++|+.+...
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C 73 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGEC 73 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcC
Confidence 4678899999999999999998887641 234457999999999999999999987421
Q ss_pred -------------EEEEechhhhhhhhchhHHHHHHHHHHHH----hcCCcEEEecccccccCCCCCchhHHHHHHHHHH
Q 003503 277 -------------FFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQL 339 (815)
Q Consensus 277 -------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 339 (815)
++.+++.. ......++.+.+.+. ...+.++||||+|.+. ....+.|
T Consensus 74 ~sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-----------~~a~naL 136 (504)
T PRK14963 74 ESCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-----------KSAFNAL 136 (504)
T ss_pred hhhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC-----------HHHHHHH
Confidence 33333321 112233455443332 2456799999998663 2234566
Q ss_pred HHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhhHHHhhcCCCc
Q 003503 340 LTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYV 418 (815)
Q Consensus 340 l~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~ 418 (815)
+..++.. ...+++|.+++.+..+.+.+++ |+ ..+.+..|+..+-...++..++...+. ++..+..++..+.|-.
T Consensus 137 Lk~LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~Gdl 211 (504)
T PRK14963 137 LKTLEEP--PEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAM 211 (504)
T ss_pred HHHHHhC--CCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 6666643 2356666677888889998887 54 468999999999888888766544432 3345677777777643
No 216
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=8.6e-11 Score=120.69 Aligned_cols=132 Identities=24% Similarity=0.410 Sum_probs=91.1
Q ss_pred ccccccchhhhhhhccccCCCCChhhhhhh----cCCC-CcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchh-hh
Q 003503 488 EDIGGLDNVKRELQETVQYPVEHPEKFEKF----GMSP-SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TM 561 (815)
Q Consensus 488 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~----~~~~-~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~-~~ 561 (815)
+.++|++..|+.|.-.+- .|...+... .... ..++||.||+|||||.||+.||..++.||-.-++..|. ..
T Consensus 61 ~YVIGQe~AKKvLsVAVY---NHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAG 137 (408)
T COG1219 61 EYVIGQEQAKKVLSVAVY---NHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAG 137 (408)
T ss_pred hheecchhhhceeeeeeh---hHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcc
Confidence 457888888887754331 111111111 1112 24599999999999999999999999999888877765 47
Q ss_pred ccCccHHH-HHHHHHHHh----hCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccC
Q 003503 562 WFGESEAN-VREIFDKAR----QSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGM 622 (815)
Q Consensus 562 ~~g~se~~-i~~~F~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~ 622 (815)
|+|+.-.+ +-++.+.|. .....|++|||||.+..+-.+.+....-.+.-|.+.||..++|-
T Consensus 138 YVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 138 YVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred ccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 99988555 456666542 22346999999999987654433333334566889999999984
No 217
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=8.2e-10 Score=127.70 Aligned_cols=187 Identities=17% Similarity=0.241 Sum_probs=123.4
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe----------
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 276 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~---------- 276 (815)
.++++-+|++|.|++..++.|+.++... ..+..+||+||+||||||+|+++|+.+...
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~ 72 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGV 72 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccc
Confidence 4578889999999999999998887641 224458999999999999999999987531
Q ss_pred ----------------EEEEechhhhhhhhchhHHHHHHHHHHH----HhcCCcEEEecccccccCCCCCchhHHHHHHH
Q 003503 277 ----------------FFLINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDELDSIAPKREKTHGEVERRIV 336 (815)
Q Consensus 277 ----------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~ 336 (815)
++.+++... ..-..++.+.+.+ ......|+||||+|.+.. ...
T Consensus 73 C~~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~-----------~A~ 135 (584)
T PRK14952 73 CESCVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT-----------AGF 135 (584)
T ss_pred cHHHHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH-----------HHH
Confidence 222222110 1123344443333 223446999999998842 245
Q ss_pred HHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhhHHHhhcC
Q 003503 337 SQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTH 415 (815)
Q Consensus 337 ~~Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~ 415 (815)
+.|+..|+.. ...+++|.+|+.++.+.+.+++ |. ..++|..++..+-.+.+...++...+. ++..+..++....
T Consensus 136 NALLK~LEEp--p~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~ 210 (584)
T PRK14952 136 NALLKIVEEP--PEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGG 210 (584)
T ss_pred HHHHHHHhcC--CCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 6777777753 3366777777888899999887 53 568898898888887877766554432 2233455555444
Q ss_pred CCcHHHHHHHHHH
Q 003503 416 GYVGSDLAALCTE 428 (815)
Q Consensus 416 g~~~~dl~~l~~~ 428 (815)
| ..++...++..
T Consensus 211 G-dlR~aln~Ldq 222 (584)
T PRK14952 211 G-SPRDTLSVLDQ 222 (584)
T ss_pred C-CHHHHHHHHHH
Confidence 4 44444444443
No 218
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.18 E-value=1.6e-10 Score=110.13 Aligned_cols=122 Identities=46% Similarity=0.693 Sum_probs=82.4
Q ss_pred CCcceEEeCCCCCChhHHHHHHHHHh---CCcEEEEeccchhhhccCccHHH---HHHHHHHHhhCCCeEEEEecchhhh
Q 003503 521 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEAN---VREIFDKARQSAPCVLFFDELDSIA 594 (815)
Q Consensus 521 ~~~gilL~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~~~g~se~~---i~~~F~~a~~~~p~ilfiDEid~l~ 594 (815)
...+++++||||||||++++.++..+ +.+++.++..+....+....... ....+.......+.++++||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 34579999999999999999999998 78888888877654432221111 1222334445567899999999872
Q ss_pred hccCCCCCCCCchHHHHHHHHHhccccCC----CCCcEEEEEecCCCC--CCCccccCCCCCcceeeccC
Q 003503 595 TQRGSSTGDAGGAADRVLNQLLTEMDGMN----AKKTVFIIGATNRPD--IIDPALLRPGRLDQLIYIPL 658 (815)
Q Consensus 595 ~~r~~~~~~~~~~~~~vl~~lL~~ld~~~----~~~~v~vi~aTn~~~--~ld~allr~gRf~~~i~~~~ 658 (815)
.. ....++..+.... ...++.+|++||... .+++.+.. ||+.++.+++
T Consensus 98 ~~--------------~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~~ 151 (151)
T cd00009 98 RG--------------AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIPL 151 (151)
T ss_pred HH--------------HHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecCC
Confidence 11 1223333333332 235788999998877 67777776 9998888764
No 219
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.18 E-value=1.5e-09 Score=111.40 Aligned_cols=166 Identities=22% Similarity=0.395 Sum_probs=101.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh-----CCeEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCC
Q 003503 250 KGILLYGPPGSGKTLIARAVANET-----GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKR 324 (815)
Q Consensus 250 ~~VLL~GppGtGKTtLar~la~~l-----~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~ 324 (815)
..++||||+|+|||+|+++++++. +..++++++.++...+.......--.-|.... ....+|+||+++.+..+
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~DlL~iDDi~~l~~~- 112 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRL-RSADLLIIDDIQFLAGK- 112 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHH-CTSSEEEEETGGGGTTH-
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhh-hcCCEEEEecchhhcCc-
Confidence 458999999999999999998874 45688898877765443222111111122222 34579999999998633
Q ss_pred CCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCC---CCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcc
Q 003503 325 EKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNS---IDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL 401 (815)
Q Consensus 325 ~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~---ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l 401 (815)
.+....|..+++.+...+..+|+++...|.. +++.+++.......+.+..|+.+.|.+|++.......+
T Consensus 113 --------~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~ 184 (219)
T PF00308_consen 113 --------QRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGI 184 (219)
T ss_dssp --------HHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT-
T ss_pred --------hHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCC
Confidence 2345667777777666667777777666654 46778773334568899999999999999987654443
Q ss_pred c-cchhhhHHHhhcCCCcHHHHHHHH
Q 003503 402 A-EDVDLERVAKDTHGYVGSDLAALC 426 (815)
Q Consensus 402 ~-~~~~l~~la~~t~g~~~~dl~~l~ 426 (815)
. ++.-+..++....+ ..+.+..++
T Consensus 185 ~l~~~v~~~l~~~~~~-~~r~L~~~l 209 (219)
T PF00308_consen 185 ELPEEVIEYLARRFRR-DVRELEGAL 209 (219)
T ss_dssp -S-HHHHHHHHHHTTS-SHHHHHHHH
T ss_pred CCcHHHHHHHHHhhcC-CHHHHHHHH
Confidence 2 22235556665443 333444333
No 220
>PRK06620 hypothetical protein; Validated
Probab=99.18 E-value=2.2e-10 Score=117.10 Aligned_cols=144 Identities=19% Similarity=0.251 Sum_probs=95.6
Q ss_pred cceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchhhhccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCC
Q 003503 523 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTG 602 (815)
Q Consensus 523 ~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~ 602 (815)
+.++||||||||||+|+++++...+..++. .... ....+ . ...++++|||+.+-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----------~~~~~----~-~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----------NEEIL----E-KYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----------chhHH----h-cCCEEEEeccccch--------
Confidence 569999999999999999999887653322 1100 00111 1 23699999999541
Q ss_pred CCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCC--CCccccCCCCCc--ceeeccCCCHHHHHHHHHHHhccCCCC
Q 003503 603 DAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDI--IDPALLRPGRLD--QLIYIPLPDEASRLQIFKACLRKSPIS 678 (815)
Q Consensus 603 ~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~--ld~allr~gRf~--~~i~~~~p~~~~r~~Il~~~l~~~~~~ 678 (815)
.. .|...++.+...++.+||+++..|.. + |++.+ |+. .++.+.+||.+.+..+++..+...++.
T Consensus 99 ------~~---~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~ 166 (214)
T PRK06620 99 ------EP---ALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVT 166 (214)
T ss_pred ------HH---HHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCC
Confidence 11 23333333334566788888877765 4 77776 875 468999999999999999888655443
Q ss_pred C-cccHHHHHHHcCCCCHHHHHHHHHHH
Q 003503 679 P-DVDLSALARYTHGFSGADITEVCQRA 705 (815)
Q Consensus 679 ~-~~~~~~la~~t~g~sg~di~~l~~~a 705 (815)
- +.-++.|+++.. -+.+.+.+++...
T Consensus 167 l~~ev~~~L~~~~~-~d~r~l~~~l~~l 193 (214)
T PRK06620 167 ISRQIIDFLLVNLP-REYSKIIEILENI 193 (214)
T ss_pred CCHHHHHHHHHHcc-CCHHHHHHHHHHH
Confidence 2 223677777665 3667777766653
No 221
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.18 E-value=2.9e-10 Score=124.24 Aligned_cols=184 Identities=21% Similarity=0.268 Sum_probs=118.1
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhC-----CcEEEEeccch
Q 003503 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPEL 558 (815)
Q Consensus 484 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~-----~~~i~v~~~~l 558 (815)
+.+|+++.|.+++++.|...+... ...+++|+||||||||++++++++.+. .+++.++.++-
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~ 79 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDE 79 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccc
Confidence 457889999999988888765421 112589999999999999999999873 34555544332
Q ss_pred hhhccCccHHHHHHHH-HHHhh-----CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEE
Q 003503 559 LTMWFGESEANVREIF-DKARQ-----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIG 632 (815)
Q Consensus 559 ~~~~~g~se~~i~~~F-~~a~~-----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~ 632 (815)
. ....++..+ +.++. ..+.++++||+|.+.. ...+.|+..++.... ...+|.
T Consensus 80 ~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~--------------~~~~~L~~~le~~~~--~~~lIl 137 (319)
T PRK00440 80 R------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS--------------DAQQALRRTMEMYSQ--NTRFIL 137 (319)
T ss_pred c------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH--------------HHHHHHHHHHhcCCC--CCeEEE
Confidence 1 111222222 22221 2346999999998732 123455555665433 344555
Q ss_pred ecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHH
Q 003503 633 ATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEVCQRAC 706 (815)
Q Consensus 633 aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~t~g~sg~di~~l~~~a~ 706 (815)
++|.+..+.+++.+ |+. ++.|++++.++...+++..+++.++. .+..+..+++.+.| +-+.+.+.++.++
T Consensus 138 ~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~ 208 (319)
T PRK00440 138 SCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAAA 208 (319)
T ss_pred EeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 66777777777776 765 68999999999999999998776653 23346777776543 4444444444433
No 222
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=5.8e-10 Score=128.43 Aligned_cols=179 Identities=19% Similarity=0.229 Sum_probs=121.3
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe----------
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 276 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~---------- 276 (815)
+++++.+|++|.|.+..++.|+.++... .-+..+||+||+|+||||+|+.+|+.+...
T Consensus 8 ~KyRP~sf~dIiGQe~v~~~L~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~ 75 (624)
T PRK14959 8 ARYRPQTFAEVAGQETVKAILSRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNT 75 (624)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcc
Confidence 4678889999999999999998887641 123579999999999999999999988642
Q ss_pred --------------EEEEechhhhhhhhchhHHHHHHHHHH----HHhcCCcEEEecccccccCCCCCchhHHHHHHHHH
Q 003503 277 --------------FFLINGPEIMSKLAGESESNLRKAFEE----AEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 338 (815)
Q Consensus 277 --------------~i~v~~~~l~~~~~g~~~~~l~~vf~~----a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 338 (815)
++.+++..- ..-..++.+.+. +......|+||||+|.+.. ...+.
T Consensus 76 C~sC~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~-----------~a~na 138 (624)
T PRK14959 76 CEQCRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR-----------EAFNA 138 (624)
T ss_pred cHHHHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH-----------HHHHH
Confidence 233333110 011223333222 2234456999999998842 23466
Q ss_pred HHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcc-ccchhhhHHHhhcCCC
Q 003503 339 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AEDVDLERVAKDTHGY 417 (815)
Q Consensus 339 Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l-~~~~~l~~la~~t~g~ 417 (815)
|+..++... ..+++|.+|+.+..+.+.+++ |+ ..+.|..++.++...+|+..+....+ .++..+..++..+.|-
T Consensus 139 LLk~LEEP~--~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~Gd 213 (624)
T PRK14959 139 LLKTLEEPP--ARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGS 213 (624)
T ss_pred HHHHhhccC--CCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 777776532 357777788888888888876 55 46789999998888888766554433 2334566777777654
Q ss_pred cH
Q 003503 418 VG 419 (815)
Q Consensus 418 ~~ 419 (815)
..
T Consensus 214 lR 215 (624)
T PRK14959 214 VR 215 (624)
T ss_pred HH
Confidence 43
No 223
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=2.5e-10 Score=133.92 Aligned_cols=185 Identities=21% Similarity=0.284 Sum_probs=123.7
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCc-------------
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------------- 549 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~------------- 549 (815)
...+|++|.|++.+++.|...+... ..+..+||+||+|+|||++|+++|..+...
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~ 78 (585)
T PRK14950 11 RSQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCE 78 (585)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCH
Confidence 4568999999999999887765431 233458999999999999999999887421
Q ss_pred ------------EEEEeccchhhhccCccHHHHHHHHHHHhh----CCCeEEEEecchhhhhccCCCCCCCCchHHHHHH
Q 003503 550 ------------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLN 613 (815)
Q Consensus 550 ------------~i~v~~~~l~~~~~g~se~~i~~~F~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~ 613 (815)
++.+++.. ...-..++++-+.+.. ....|+||||+|.+. ...++
T Consensus 79 ~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~--------------~~a~n 138 (585)
T PRK14950 79 MCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS--------------TAAFN 138 (585)
T ss_pred HHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC--------------HHHHH
Confidence 22222211 0112334554443322 335699999999873 23467
Q ss_pred HHHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHcCC
Q 003503 614 QLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHG 692 (815)
Q Consensus 614 ~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~t~g 692 (815)
.||..|+... ..+++|.+|+.++.+.+.+.+ |+. ++.|..++..+...+++..+.+.++.- +..+..|++.+.|
T Consensus 139 aLLk~LEepp--~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G 213 (585)
T PRK14950 139 ALLKTLEEPP--PHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG 213 (585)
T ss_pred HHHHHHhcCC--CCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 7888888643 345666666667777777776 764 789999999999999988887665432 2235666666654
Q ss_pred CCHHHHHHHHHHH
Q 003503 693 FSGADITEVCQRA 705 (815)
Q Consensus 693 ~sg~di~~l~~~a 705 (815)
+.+++.+.++..
T Consensus 214 -dlr~al~~LekL 225 (585)
T PRK14950 214 -SMRDAENLLQQL 225 (585)
T ss_pred -CHHHHHHHHHHH
Confidence 666666655543
No 224
>PRK06893 DNA replication initiation factor; Validated
Probab=99.17 E-value=8.3e-10 Score=114.43 Aligned_cols=150 Identities=14% Similarity=0.222 Sum_probs=97.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCC
Q 003503 250 KGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREK 326 (815)
Q Consensus 250 ~~VLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~ 326 (815)
..++||||||||||+|++++|+++ +....+++..... .....+++.. ....+|+|||++.+..+..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~--~~~dlLilDDi~~~~~~~~- 108 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENL--EQQDLVCLDDLQAVIGNEE- 108 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhc--ccCCEEEEeChhhhcCChH-
Confidence 458999999999999999999886 2344444432211 0111223322 2457999999998864421
Q ss_pred chhHHHHHHHHHHHHhhhcccCCC-cEEEEEecCCCCCCC---HHhhccCCcceEEEcCCCCHHHHHHHHHHHhc--CCc
Q 003503 327 THGEVERRIVSQLLTLMDGLKSRA-HVIVMGATNRPNSID---PALRRFGRFDREIDIGVPDEVGRLEILRIHTK--NMK 400 (815)
Q Consensus 327 ~~~~~~~~v~~~Ll~~ld~~~~~~-~vivi~atn~~~~ld---~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~--~~~ 400 (815)
....|..+++...... .+++++++..|..++ +.+++..++...+.++.|+.++|.++++..+. ++.
T Consensus 109 --------~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~ 180 (229)
T PRK06893 109 --------WELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIE 180 (229)
T ss_pred --------HHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 1234555555554433 355666666676554 78888666678899999999999999997654 344
Q ss_pred cccchhhhHHHhhcCCCcH
Q 003503 401 LAEDVDLERVAKDTHGYVG 419 (815)
Q Consensus 401 l~~~~~l~~la~~t~g~~~ 419 (815)
+.+ .-+..++.+..|-..
T Consensus 181 l~~-~v~~~L~~~~~~d~r 198 (229)
T PRK06893 181 LSD-EVANFLLKRLDRDMH 198 (229)
T ss_pred CCH-HHHHHHHHhccCCHH
Confidence 433 346777777665433
No 225
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=1.2e-09 Score=125.09 Aligned_cols=187 Identities=17% Similarity=0.245 Sum_probs=122.6
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-----------
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA----------- 275 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~----------- 275 (815)
+++++.+|+++.|++..++.+...+... ..+..+||+||+|+||||+|+.+|+.+..
T Consensus 8 ~KyRP~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~ 75 (546)
T PRK14957 8 RKYRPQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNK 75 (546)
T ss_pred HHHCcCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcc
Confidence 4677889999999999999988877631 22445899999999999999999998753
Q ss_pred -------------eEEEEechhhhhhhhchhHHHHHHHHHHHH----hcCCcEEEecccccccCCCCCchhHHHHHHHHH
Q 003503 276 -------------FFFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 338 (815)
Q Consensus 276 -------------~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 338 (815)
.++.+++..- ..-..++.+++.+. .....|+||||+|.+.. ...+.
T Consensus 76 C~sC~~i~~~~~~dlieidaas~------~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~-----------~a~na 138 (546)
T PRK14957 76 CENCVAINNNSFIDLIEIDAASR------TGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK-----------QSFNA 138 (546)
T ss_pred cHHHHHHhcCCCCceEEeecccc------cCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH-----------HHHHH
Confidence 1222332110 11223444544432 23456999999988742 24567
Q ss_pred HHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhhHHHhhcCCC
Q 003503 339 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 417 (815)
Q Consensus 339 Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~ 417 (815)
|+..++.. ...+.+|.+|+.+..+.+.+++ |+ ..+++..++.++-...++..++...+. ++..+..++..+.|
T Consensus 139 LLK~LEep--p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G- 212 (546)
T PRK14957 139 LLKTLEEP--PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG- 212 (546)
T ss_pred HHHHHhcC--CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 77777753 2355666666778888888876 55 678999999888777777655544332 23345666666654
Q ss_pred cHHHHHHHHHH
Q 003503 418 VGSDLAALCTE 428 (815)
Q Consensus 418 ~~~dl~~l~~~ 428 (815)
..+++..++..
T Consensus 213 dlR~alnlLek 223 (546)
T PRK14957 213 SLRDALSLLDQ 223 (546)
T ss_pred CHHHHHHHHHH
Confidence 33444444443
No 226
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.16 E-value=4.2e-10 Score=127.41 Aligned_cols=157 Identities=20% Similarity=0.321 Sum_probs=102.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh-----CCeEEEEechhhhhhhhchhH-HHHHHHHHHHHhcCCcEEEecccccccCC
Q 003503 250 KGILLYGPPGSGKTLIARAVANET-----GAFFFLINGPEIMSKLAGESE-SNLRKAFEEAEKNAPSIIFIDELDSIAPK 323 (815)
Q Consensus 250 ~~VLL~GppGtGKTtLar~la~~l-----~~~~i~v~~~~l~~~~~g~~~-~~l~~vf~~a~~~~p~il~iDEid~l~~~ 323 (815)
..++||||+|+|||+|++++++.+ +..++++++.++......... ..+.. |.......+.+|+|||++++...
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc
Confidence 469999999999999999999885 356788888876654432211 11112 22222335789999999988644
Q ss_pred CCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCC---CHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcC--
Q 003503 324 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI---DPALRRFGRFDREIDIGVPDEVGRLEILRIHTKN-- 398 (815)
Q Consensus 324 ~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~l---d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~-- 398 (815)
.. ....+...++.+......+|+++.+.|..+ .+.+++.......+.+..|+.+.|..|++..+..
T Consensus 210 ~~---------~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~ 280 (440)
T PRK14088 210 TG---------VQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEH 280 (440)
T ss_pred HH---------HHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcC
Confidence 21 123344445444444456666666676654 4556652233467789999999999999987653
Q ss_pred CccccchhhhHHHhhcCCC
Q 003503 399 MKLAEDVDLERVAKDTHGY 417 (815)
Q Consensus 399 ~~l~~~~~l~~la~~t~g~ 417 (815)
+.+.+ ..+..++....+-
T Consensus 281 ~~l~~-ev~~~Ia~~~~~~ 298 (440)
T PRK14088 281 GELPE-EVLNFVAENVDDN 298 (440)
T ss_pred CCCCH-HHHHHHHhccccC
Confidence 44433 3477777776653
No 227
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.16 E-value=6.6e-10 Score=127.35 Aligned_cols=158 Identities=18% Similarity=0.313 Sum_probs=104.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh-----CCeEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCC
Q 003503 250 KGILLYGPPGSGKTLIARAVANET-----GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKR 324 (815)
Q Consensus 250 ~~VLL~GppGtGKTtLar~la~~l-----~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~ 324 (815)
..++|||++|||||+|+++|++.+ +..++++++.++...+...........|..-. ..+++|+||||+++..+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCH
Confidence 349999999999999999999976 45788999888776554333222222344332 346899999999987542
Q ss_pred CCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCC---CCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcc
Q 003503 325 EKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN---SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL 401 (815)
Q Consensus 325 ~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~---~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l 401 (815)
. ....|+.+++.+.....-+||.+...+. .+++.|++.......+.+..|+.+.|..||+.++....+
T Consensus 394 ~---------tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l 464 (617)
T PRK14086 394 S---------TQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQL 464 (617)
T ss_pred H---------HHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 1 1234555555554444445554444443 567888884444677799999999999999987664433
Q ss_pred c-cchhhhHHHhhcCCC
Q 003503 402 A-EDVDLERVAKDTHGY 417 (815)
Q Consensus 402 ~-~~~~l~~la~~t~g~ 417 (815)
. .+.-+..|+.+..+-
T Consensus 465 ~l~~eVi~yLa~r~~rn 481 (617)
T PRK14086 465 NAPPEVLEFIASRISRN 481 (617)
T ss_pred CCCHHHHHHHHHhccCC
Confidence 2 233466777765543
No 228
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.15 E-value=2.8e-09 Score=110.89 Aligned_cols=175 Identities=14% Similarity=0.170 Sum_probs=104.8
Q ss_pred CCcccc--cChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC---CeEEEEechhhh
Q 003503 212 VGYDDV--GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG---AFFFLINGPEIM 286 (815)
Q Consensus 212 ~~~~~i--~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~---~~~i~v~~~~l~ 286 (815)
.+|++. |+....+..++++... ..+..++|+||+|||||+|++++++.+. ..+.+++..+..
T Consensus 19 ~~fd~f~~~~n~~a~~~l~~~~~~-------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~ 85 (235)
T PRK08084 19 ETFASFYPGDNDSLLAALQNALRQ-------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRA 85 (235)
T ss_pred CCccccccCccHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHh
Confidence 344443 3455566666665432 2235799999999999999999998753 345555544322
Q ss_pred hhhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCc-EEEEEecCCCCC--
Q 003503 287 SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH-VIVMGATNRPNS-- 363 (815)
Q Consensus 287 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~-vivi~atn~~~~-- 363 (815)
.. ...+++.... ..+++|||++.+..+. .....|..+++.....++ -+++.+++.|..
T Consensus 86 ~~--------~~~~~~~~~~--~dlliiDdi~~~~~~~---------~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~ 146 (235)
T PRK08084 86 WF--------VPEVLEGMEQ--LSLVCIDNIECIAGDE---------LWEMAIFDLYNRILESGRTRLLITGDRPPRQLN 146 (235)
T ss_pred hh--------hHHHHHHhhh--CCEEEEeChhhhcCCH---------HHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcC
Confidence 11 1122222211 3589999999885431 122334444444333333 355555566655
Q ss_pred -CCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcC--CccccchhhhHHHhhcCCCcH
Q 003503 364 -IDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKN--MKLAEDVDLERVAKDTHGYVG 419 (815)
Q Consensus 364 -ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~--~~l~~~~~l~~la~~t~g~~~ 419 (815)
+.+.|++.......+.+..|+.+++.++++..... +.+.+ .-+..++....+-..
T Consensus 147 ~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~-~v~~~L~~~~~~d~r 204 (235)
T PRK08084 147 LGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPE-DVGRFLLKRLDREMR 204 (235)
T ss_pred cccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHhhcCCHH
Confidence 57889883333478899999999999999875443 33433 346777777665433
No 229
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=1.1e-09 Score=127.14 Aligned_cols=193 Identities=16% Similarity=0.198 Sum_probs=125.1
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeE---------
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF--------- 277 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~--------- 277 (815)
.++++-+|+++.|.+..++.|+.++..- ..+..+||+||+|+||||+|+++|+.++..-
T Consensus 8 ~KyRP~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~ 75 (618)
T PRK14951 8 RKYRPRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA 75 (618)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC
Confidence 4677889999999999999998887641 2245689999999999999999999876410
Q ss_pred ----EEEechhhhh----------hhhchhHHHHHHHHHHHHh----cCCcEEEecccccccCCCCCchhHHHHHHHHHH
Q 003503 278 ----FLINGPEIMS----------KLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQL 339 (815)
Q Consensus 278 ----i~v~~~~l~~----------~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 339 (815)
..-+|..+.. ......-..++.+.+.+.. ....|++|||+|.+... ..+.|
T Consensus 76 ~pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~-----------a~NaL 144 (618)
T PRK14951 76 TPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT-----------AFNAM 144 (618)
T ss_pred CCCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH-----------HHHHH
Confidence 0001111100 0001122345666655432 23459999999988522 34567
Q ss_pred HHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhhHHHhhcCCCc
Q 003503 340 LTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYV 418 (815)
Q Consensus 340 l~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~ 418 (815)
+..++.. ...+.+|.+|+.+..+.+.+++ |+ ..+++..++.++....|+..+....+. ++..+..++..+.| +
T Consensus 145 LKtLEEP--P~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~G-s 218 (618)
T PRK14951 145 LKTLEEP--PEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARG-S 218 (618)
T ss_pred HHhcccC--CCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 7766643 3356666677788888888877 55 668899998888888887666544433 23346777777666 4
Q ss_pred HHHHHHHHHH
Q 003503 419 GSDLAALCTE 428 (815)
Q Consensus 419 ~~dl~~l~~~ 428 (815)
.+++..++..
T Consensus 219 lR~al~lLdq 228 (618)
T PRK14951 219 MRDALSLTDQ 228 (618)
T ss_pred HHHHHHHHHH
Confidence 4455455443
No 230
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.14 E-value=2.2e-10 Score=123.95 Aligned_cols=160 Identities=20% Similarity=0.363 Sum_probs=101.1
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhC-------C--cEEEEe
Q 003503 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-------A--NFISVK 554 (815)
Q Consensus 484 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~-------~--~~i~v~ 554 (815)
...|.+|.|++++++.|.-.... ....++||+|+|||||||+|++++..+. . ++..+.
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 46789999999998877543211 1124699999999999999999999982 2 222111
Q ss_pred c-c--------chhh---------------hccCcc--HHHH---HHHHHHH--hhCCCeEEEEecchhhhhccCCCCCC
Q 003503 555 G-P--------ELLT---------------MWFGES--EANV---REIFDKA--RQSAPCVLFFDELDSIATQRGSSTGD 603 (815)
Q Consensus 555 ~-~--------~l~~---------------~~~g~s--e~~i---~~~F~~a--~~~~p~ilfiDEid~l~~~r~~~~~~ 603 (815)
+ + ++.. ..+|.. ++.+ ...|+.- ......+||+|||+.+-
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~--------- 141 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE--------- 141 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC---------
Confidence 1 0 1100 011110 0000 0012110 00111499999999973
Q ss_pred CCchHHHHHHHHHhccccCC-----------CCCcEEEEEecCCCC-CCCccccCCCCCcceeeccCCCH-HHHHHHHHH
Q 003503 604 AGGAADRVLNQLLTEMDGMN-----------AKKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLPDE-ASRLQIFKA 670 (815)
Q Consensus 604 ~~~~~~~vl~~lL~~ld~~~-----------~~~~v~vi~aTn~~~-~ld~allr~gRf~~~i~~~~p~~-~~r~~Il~~ 670 (815)
..+++.|+..|+.-. ...++++++|+|..+ .+.++++. ||...+.+++|.. ++|.+|++.
T Consensus 142 -----~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~ 214 (334)
T PRK13407 142 -----DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRR 214 (334)
T ss_pred -----HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHH
Confidence 345566666665321 234689999999755 58889998 9999999998877 899999987
Q ss_pred Hh
Q 003503 671 CL 672 (815)
Q Consensus 671 ~l 672 (815)
..
T Consensus 215 ~~ 216 (334)
T PRK13407 215 RD 216 (334)
T ss_pred hh
Confidence 54
No 231
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=7.3e-10 Score=127.89 Aligned_cols=188 Identities=16% Similarity=0.251 Sum_probs=124.6
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe----------
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 276 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~---------- 276 (815)
.++.+-+|++|.|.+..++.+..++... ..+..+||+||+|+||||+|+++|+.++..
T Consensus 8 ~k~rP~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~ 75 (527)
T PRK14969 8 RKWRPKSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGV 75 (527)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 3567789999999999999998887631 224568999999999999999999988542
Q ss_pred --------------EEEEechhhhhhhhchhHHHHHHHHHHHHh----cCCcEEEecccccccCCCCCchhHHHHHHHHH
Q 003503 277 --------------FFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 338 (815)
Q Consensus 277 --------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 338 (815)
++.+++. .......++.++..+.. ....|+||||+|.+.. ...+.
T Consensus 76 C~~C~~i~~~~~~d~~ei~~~------~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~-----------~a~na 138 (527)
T PRK14969 76 CSACLEIDSGRFVDLIEVDAA------SNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK-----------SAFNA 138 (527)
T ss_pred CHHHHHHhcCCCCceeEeecc------ccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH-----------HHHHH
Confidence 1222211 01123456666665532 2346999999998742 23466
Q ss_pred HHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhhHHHhhcCCC
Q 003503 339 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 417 (815)
Q Consensus 339 Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~ 417 (815)
|+..++.. ...+++|.+|+.++.+.+.+++ |+ ..+++..++.++-...+...+....+. ++..+..++..+.|-
T Consensus 139 LLK~LEep--p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gs 213 (527)
T PRK14969 139 MLKTLEEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGS 213 (527)
T ss_pred HHHHHhCC--CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 77777653 2456666677778888877776 54 567889998888777776655433332 223456666666553
Q ss_pred cHHHHHHHHHHH
Q 003503 418 VGSDLAALCTEA 429 (815)
Q Consensus 418 ~~~dl~~l~~~a 429 (815)
.++...++..+
T Consensus 214 -lr~al~lldqa 224 (527)
T PRK14969 214 -MRDALSLLDQA 224 (527)
T ss_pred -HHHHHHHHHHH
Confidence 44555555544
No 232
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.13 E-value=1.4e-09 Score=124.52 Aligned_cols=177 Identities=18% Similarity=0.238 Sum_probs=120.7
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-----------
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA----------- 275 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~----------- 275 (815)
+++++-+|+++.|.+..++.+..++.. -..+..+||+||+|+||||+|+++|+.+..
T Consensus 8 ~KyRP~~F~dIIGQe~iv~~L~~aI~~------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~ 75 (605)
T PRK05896 8 RKYRPHNFKQIIGQELIKKILVNAILN------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNS 75 (605)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 467888999999999999999887753 122457999999999999999999998742
Q ss_pred -------------eEEEEechhhhhhhhchhHHHHHHHHHHHHh----cCCcEEEecccccccCCCCCchhHHHHHHHHH
Q 003503 276 -------------FFFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 338 (815)
Q Consensus 276 -------------~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 338 (815)
.++.+++.. ...-..++.+...+.. ....+++|||+|.+.. ...+.
T Consensus 76 C~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~-----------~A~Na 138 (605)
T PRK05896 76 CSVCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST-----------SAWNA 138 (605)
T ss_pred cHHHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH-----------HHHHH
Confidence 122222211 0122345555554432 2345899999998742 23466
Q ss_pred HHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcc-ccchhhhHHHhhcCCC
Q 003503 339 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AEDVDLERVAKDTHGY 417 (815)
Q Consensus 339 Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l-~~~~~l~~la~~t~g~ 417 (815)
|+..|+... ..+++|.+|+.+..+.+++++ |+ ..+++..++..+....+...+....+ .++..+..++..+.|-
T Consensus 139 LLKtLEEPp--~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~Gd 213 (605)
T PRK05896 139 LLKTLEEPP--KHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGS 213 (605)
T ss_pred HHHHHHhCC--CcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCc
Confidence 777777533 356677777888999999887 55 46899999998888888766544332 2233466777777663
No 233
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.13 E-value=1.5e-09 Score=126.25 Aligned_cols=188 Identities=21% Similarity=0.304 Sum_probs=127.7
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-----------
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA----------- 275 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~----------- 275 (815)
.++++.+|+++.|.+..++.++..+... ..+..+||+||+|||||++|+.+|+.+..
T Consensus 8 ~k~rP~~f~~viGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~ 75 (559)
T PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNE 75 (559)
T ss_pred HHhCCCcHHhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 3567889999999999999998887631 23456899999999999999999998742
Q ss_pred -------------eEEEEechhhhhhhhchhHHHHHHHHHHHH----hcCCcEEEecccccccCCCCCchhHHHHHHHHH
Q 003503 276 -------------FFFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 338 (815)
Q Consensus 276 -------------~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 338 (815)
.++.+++. .+.....++.+...+. .....|++|||+|.+.. ...+.
T Consensus 76 C~~C~~i~~g~~~dv~eidaa------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~-----------~a~na 138 (559)
T PRK05563 76 CEICKAITNGSLMDVIEIDAA------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST-----------GAFNA 138 (559)
T ss_pred cHHHHHHhcCCCCCeEEeecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHH
Confidence 12333321 1123345666666543 23446999999998842 23466
Q ss_pred HHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhhHHHhhcCCC
Q 003503 339 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 417 (815)
Q Consensus 339 Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~ 417 (815)
|+..++.. ...+++|.+|+.++.+.+.+++ |+ ..+.+..|+..+-...++..++...+. ++..+..++....|
T Consensus 139 LLKtLEep--p~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G- 212 (559)
T PRK05563 139 LLKTLEEP--PAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG- 212 (559)
T ss_pred HHHHhcCC--CCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 77777653 3356666667788999999887 55 457899999988888887766554432 23446667776665
Q ss_pred cHHHHHHHHHHH
Q 003503 418 VGSDLAALCTEA 429 (815)
Q Consensus 418 ~~~dl~~l~~~a 429 (815)
..++...++..+
T Consensus 213 ~~R~al~~Ldq~ 224 (559)
T PRK05563 213 GMRDALSILDQA 224 (559)
T ss_pred CHHHHHHHHHHH
Confidence 445554444433
No 234
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.13 E-value=8.8e-10 Score=113.29 Aligned_cols=179 Identities=20% Similarity=0.262 Sum_probs=117.0
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe------EEEE
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF------FFLI 280 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~------~i~v 280 (815)
+++.+-+|+++.|.+.+++.+...+.- .-..++|+|||||||||+.++++|.++..+ +...
T Consensus 28 eKYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~l 94 (346)
T KOG0989|consen 28 EKYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLEL 94 (346)
T ss_pred HHhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhh
Confidence 567888999999999999998777653 224579999999999999999999998652 2344
Q ss_pred echhhhhhhhchhHHHHHHHHHHHHh---------cCC-cEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCC
Q 003503 281 NGPEIMSKLAGESESNLRKAFEEAEK---------NAP-SIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRA 350 (815)
Q Consensus 281 ~~~~l~~~~~g~~~~~l~~vf~~a~~---------~~p-~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~ 350 (815)
|.++..+.... ..++. -|..... ..| -|+++||.|.+. ......|...|+....
T Consensus 95 naSderGisvv--r~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt-----------sdaq~aLrr~mE~~s~-- 158 (346)
T KOG0989|consen 95 NASDERGISVV--REKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMT-----------SDAQAALRRTMEDFSR-- 158 (346)
T ss_pred cccccccccch--hhhhc-CHHHHhhccccccCCCCCcceEEEEechhhhh-----------HHHHHHHHHHHhcccc--
Confidence 44443332211 11111 1111111 122 699999999875 3356778888887544
Q ss_pred cEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcccc-chhhhHHHhhcCCC
Q 003503 351 HVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAE-DVDLERVAKDTHGY 417 (815)
Q Consensus 351 ~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~-~~~l~~la~~t~g~ 417 (815)
.+.++..||.++.|...+.+ |..+ +.|+....+.-...|+..+....+.- +..+..++..+.|-
T Consensus 159 ~trFiLIcnylsrii~pi~S--RC~K-frFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 159 TTRFILICNYLSRIIRPLVS--RCQK-FRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGD 223 (346)
T ss_pred ceEEEEEcCChhhCChHHHh--hHHH-hcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCc
Confidence 45556679999999888876 5533 55666666666666666555444432 33467777776664
No 235
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.13 E-value=1.2e-09 Score=115.69 Aligned_cols=133 Identities=25% Similarity=0.308 Sum_probs=91.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechh------hhhhhhchhHHHH---------------------HHH
Q 003503 248 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPE------IMSKLAGESESNL---------------------RKA 300 (815)
Q Consensus 248 ~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~------l~~~~~g~~~~~l---------------------~~v 300 (815)
.+.+|||+||||||||++|+++|..++.+++.++|.. +++.+.+.....+ +.+
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 3678999999999999999999999999999998743 3333322111110 111
Q ss_pred HHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhccc--------------CCCcEEEEEecCCCC----
Q 003503 301 FEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK--------------SRAHVIVMGATNRPN---- 362 (815)
Q Consensus 301 f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--------------~~~~vivi~atn~~~---- 362 (815)
+... . ...++++||++.+.+ .+...|+..|+.-. .+..+.+|+|+|...
T Consensus 100 ~~A~-~-~g~~lllDEi~r~~~-----------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~ 166 (262)
T TIGR02640 100 TLAV-R-EGFTLVYDEFTRSKP-----------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGV 166 (262)
T ss_pred HHHH-H-cCCEEEEcchhhCCH-----------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccce
Confidence 2212 2 346999999998642 24455666664311 223567888999763
Q ss_pred -CCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHh
Q 003503 363 -SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHT 396 (815)
Q Consensus 363 -~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~ 396 (815)
.+++++.+ || ..+.++.|+.++-.+|++.+.
T Consensus 167 ~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 167 HETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 56888887 77 568999999999999998764
No 236
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.13 E-value=1.3e-09 Score=103.81 Aligned_cols=121 Identities=46% Similarity=0.746 Sum_probs=78.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhhhchhHHH---HHHHHHHHHhcCCcEEEeccccccc
Q 003503 248 PPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGESESN---LRKAFEEAEKNAPSIIFIDELDSIA 321 (815)
Q Consensus 248 ~~~~VLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~~~~---l~~vf~~a~~~~p~il~iDEid~l~ 321 (815)
.+.+++|+||||||||++++.+++.+ +..++.+++.+............ ....+.......+.++++||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 46789999999999999999999998 78888888876654332221111 1222333444567899999999772
Q ss_pred CCCCCchhHHHHHHHHHHHHhhhcccC----CCcEEEEEecCCCC--CCCHHhhccCCcceEEEcC
Q 003503 322 PKREKTHGEVERRIVSQLLTLMDGLKS----RAHVIVMGATNRPN--SIDPALRRFGRFDREIDIG 381 (815)
Q Consensus 322 ~~~~~~~~~~~~~v~~~Ll~~ld~~~~----~~~vivi~atn~~~--~ld~al~r~~rf~~~i~i~ 381 (815)
. .....+...+..... ...+.+|++++... .+++.+.. ||+..+.++
T Consensus 98 ~-----------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 98 R-----------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred H-----------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 1 112334444443322 35677777888776 56676665 777666654
No 237
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.13 E-value=1.2e-09 Score=113.93 Aligned_cols=191 Identities=26% Similarity=0.427 Sum_probs=120.3
Q ss_pred cccCCCCcccccChHHHHHH---HHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe---EEEE
Q 003503 207 ERLNEVGYDDVGGVRKQMAQ---IRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---FFLI 280 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~---i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~---~i~v 280 (815)
++.++-+++|.+|+++.+.+ |+.+++. ..-..++|+||||||||||||.|+.....+ |+.+
T Consensus 130 ermRPktL~dyvGQ~hlv~q~gllrs~ieq-------------~~ipSmIlWGppG~GKTtlArlia~tsk~~Syrfvel 196 (554)
T KOG2028|consen 130 ERMRPKTLDDYVGQSHLVGQDGLLRSLIEQ-------------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVEL 196 (554)
T ss_pred hhcCcchHHHhcchhhhcCcchHHHHHHHc-------------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEE
Confidence 45566788888888887643 4555543 233469999999999999999999887554 5666
Q ss_pred echhhhhhhhchhHHHHHHHHHHHHh-----cCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEE
Q 003503 281 NGPEIMSKLAGESESNLRKAFEEAEK-----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVM 355 (815)
Q Consensus 281 ~~~~l~~~~~g~~~~~l~~vf~~a~~-----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi 355 (815)
+... ..-..+|.+|+.+.. ....|||||||+.+-..++ ..++-. ..++.|++|
T Consensus 197 SAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQ-----------D~fLP~----VE~G~I~lI 254 (554)
T KOG2028|consen 197 SATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQ-----------DTFLPH----VENGDITLI 254 (554)
T ss_pred eccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhh-----------hcccce----eccCceEEE
Confidence 5422 123567888888765 3568999999998754322 112221 235678888
Q ss_pred EecC-CC-CCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhc----------CCcc----ccchhhhHHHhhcCCCcH
Q 003503 356 GATN-RP-NSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTK----------NMKL----AEDVDLERVAKDTHGYVG 419 (815)
Q Consensus 356 ~atn-~~-~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~----------~~~l----~~~~~l~~la~~t~g~~~ 419 (815)
|+|. .| -.+..+|.+ |+ +.+.+.....+.-..||..-.. .++. .++.-++.++..+.|-..
T Consensus 255 GATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 255 GATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred ecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 7653 34 366788887 43 3455666667777777664211 1111 123346778888888766
Q ss_pred HHHHHHHHHHHHHhHH
Q 003503 420 SDLAALCTEAALQCIR 435 (815)
Q Consensus 420 ~dl~~l~~~a~~~~~~ 435 (815)
..+..|--.+.+.+.+
T Consensus 332 ~aLN~Lems~~m~~tr 347 (554)
T KOG2028|consen 332 AALNALEMSLSMFCTR 347 (554)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6666554444444433
No 238
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.13 E-value=1.4e-09 Score=113.51 Aligned_cols=111 Identities=23% Similarity=0.160 Sum_probs=71.6
Q ss_pred EEEEecCC------------CCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHcCCCCH
Q 003503 629 FIIGATNR------------PDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGFSG 695 (815)
Q Consensus 629 ~vi~aTn~------------~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~t~g~sg 695 (815)
+||.|||| |.-|+..|+. |+ .+|...+++.++.++|++...+...+.-+ .-++.|+.....-|=
T Consensus 322 Iii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSL 398 (450)
T COG1224 322 IIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSL 398 (450)
T ss_pred EEEEEcCCceeeecccCCcCCCCCCHhhhh--he-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhH
Confidence 78888886 4446667775 65 46777899999999999999977665432 336677766555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccccHHHHHHHHhhcc-CCCCHHHHHHHH
Q 003503 696 ADITEVCQRACKYAIRENIEKDIERERRKRENPEAMEEDEVDDVAEIKAVHFEESMKYAR-RSVSDADIRKYQ 767 (815)
Q Consensus 696 ~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~-~svs~~~~~~y~ 767 (815)
+.--+++.-|...|.++. ...|..+|.+.|-..+- -+-|.+-++.|+
T Consensus 399 RYa~qLL~pa~iiA~~rg-------------------------~~~V~~~dVe~a~~lF~D~krSv~~v~~~~ 446 (450)
T COG1224 399 RYAVQLLTPASIIAKRRG-------------------------SKRVEVEDVERAKELFLDVKRSVEYVEKYE 446 (450)
T ss_pred HHHHHhccHHHHHHHHhC-------------------------CCeeehhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 555555555655555543 12678888888876652 223344444444
No 239
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.12 E-value=1.4e-09 Score=129.00 Aligned_cols=183 Identities=24% Similarity=0.363 Sum_probs=118.6
Q ss_pred cccCCCCcccccChHHHHH---HHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEech
Q 003503 207 ERLNEVGYDDVGGVRKQMA---QIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGP 283 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~---~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~ 283 (815)
+++++-+++++.|.+..+. .+++++.. ....+++|+|||||||||+|+++++.++..++.+++.
T Consensus 20 ek~RP~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~ 86 (725)
T PRK13341 20 DRLRPRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAV 86 (725)
T ss_pred HhcCCCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhh
Confidence 4567789999999999885 45555542 2235799999999999999999999999888888864
Q ss_pred hhhhhhhchhHHHHHHHHHHHH-----hcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEec
Q 003503 284 EIMSKLAGESESNLRKAFEEAE-----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGAT 358 (815)
Q Consensus 284 ~l~~~~~g~~~~~l~~vf~~a~-----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~at 358 (815)
... ...++.++..+. .....++||||+|.+... ....|+..++ ...+++|++|
T Consensus 87 ~~~-------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~-----------qQdaLL~~lE----~g~IiLI~aT 144 (725)
T PRK13341 87 LAG-------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA-----------QQDALLPWVE----NGTITLIGAT 144 (725)
T ss_pred hhh-------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH-----------HHHHHHHHhc----CceEEEEEec
Confidence 311 112233333321 134569999999987421 1234555443 3456777655
Q ss_pred CC--CCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhc-------C--CccccchhhhHHHhhcCCCcHHHHHHHHH
Q 003503 359 NR--PNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTK-------N--MKLAEDVDLERVAKDTHGYVGSDLAALCT 427 (815)
Q Consensus 359 n~--~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~-------~--~~l~~~~~l~~la~~t~g~~~~dl~~l~~ 427 (815)
+. ...+++++.+ |. ..+.++.++.++...+++..+. . +.+ ++..+..++....|- .+.+..++.
T Consensus 145 Tenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I-~deaL~~La~~s~GD-~R~lln~Le 219 (725)
T PRK13341 145 TENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDL-EPEAEKHLVDVANGD-ARSLLNALE 219 (725)
T ss_pred CCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCC-CHHHHHHHHHhCCCC-HHHHHHHHH
Confidence 33 3467888887 43 4588999999999999987664 1 222 233466777766543 333444444
Q ss_pred HH
Q 003503 428 EA 429 (815)
Q Consensus 428 ~a 429 (815)
.+
T Consensus 220 ~a 221 (725)
T PRK13341 220 LA 221 (725)
T ss_pred HH
Confidence 43
No 240
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.12 E-value=1.1e-09 Score=128.34 Aligned_cols=186 Identities=19% Similarity=0.283 Sum_probs=130.1
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhC---------------
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ--------------- 547 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~--------------- 547 (815)
...+|++|.|++.+++.|...+.. + ..+..+|||||+|+|||++|+++|..+.
T Consensus 12 RP~~f~~viGq~~~~~~L~~~i~~-----------~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~ 79 (614)
T PRK14971 12 RPSTFESVVGQEALTTTLKNAIAT-----------N-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECE 79 (614)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcch
Confidence 356899999999999988877643 1 2345699999999999999999999864
Q ss_pred ----------CcEEEEeccchhhhccCccHHHHHHHHHHHhhC----CCeEEEEecchhhhhccCCCCCCCCchHHHHHH
Q 003503 548 ----------ANFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSTGDAGGAADRVLN 613 (815)
Q Consensus 548 ----------~~~i~v~~~~l~~~~~g~se~~i~~~F~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~ 613 (815)
.+++.+++.+- .+...++.+...+... ...|++|||+|.+. ....+
T Consensus 80 sC~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls--------------~~a~n 139 (614)
T PRK14971 80 SCVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS--------------QAAFN 139 (614)
T ss_pred HHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC--------------HHHHH
Confidence 23344433211 1234566666655433 24699999999873 23467
Q ss_pred HHHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHHcCC
Q 003503 614 QLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSALARYTHG 692 (815)
Q Consensus 614 ~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-~~~~la~~t~g 692 (815)
.||..|+... ...++|.+|+.+..|-+.+++ |+ .++.|.+++.++....++..+++.++.-+. .+..|++.+.
T Consensus 140 aLLK~LEepp--~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~- 213 (614)
T PRK14971 140 AFLKTLEEPP--SYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKAD- 213 (614)
T ss_pred HHHHHHhCCC--CCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-
Confidence 8888888643 345566666666788888887 77 479999999999999999888777665333 3677777664
Q ss_pred CCHHHHHHHHHHHH
Q 003503 693 FSGADITEVCQRAC 706 (815)
Q Consensus 693 ~sg~di~~l~~~a~ 706 (815)
.+-+++.+.+...+
T Consensus 214 gdlr~al~~Lekl~ 227 (614)
T PRK14971 214 GGMRDALSIFDQVV 227 (614)
T ss_pred CCHHHHHHHHHHHH
Confidence 36666655555443
No 241
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.12 E-value=2.1e-09 Score=125.66 Aligned_cols=192 Identities=19% Similarity=0.286 Sum_probs=126.7
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEE---Eech
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFL---INGP 283 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~---v~~~ 283 (815)
.++++.+|++|.|++..++.++..+... ..+..+||+||+|+|||++|+++|+.+...... -.|.
T Consensus 10 ~KyRP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~ 77 (725)
T PRK07133 10 RKYRPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQ 77 (725)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchh
Confidence 4678889999999999999998888641 224568999999999999999999987542110 0010
Q ss_pred ----------hhh--hhhhchhHHHHHHHHHHHHh----cCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhccc
Q 003503 284 ----------EIM--SKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK 347 (815)
Q Consensus 284 ----------~l~--~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~ 347 (815)
++. ..........++.+.+.+.. ....|++|||+|.+.. ...+.|+..|+..
T Consensus 78 ~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~-----------~A~NALLKtLEEP- 145 (725)
T PRK07133 78 ECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK-----------SAFNALLKTLEEP- 145 (725)
T ss_pred HHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH-----------HHHHHHHHHhhcC-
Confidence 000 00000123446666665543 3446999999998742 2456777777753
Q ss_pred CCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcccc-chhhhHHHhhcCCCcHHHHHHHH
Q 003503 348 SRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAE-DVDLERVAKDTHGYVGSDLAALC 426 (815)
Q Consensus 348 ~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~-~~~l~~la~~t~g~~~~dl~~l~ 426 (815)
...+++|.+|+.++.+.+.+++ |+ ..+.+..++..+....|...+....+.. +..+..++..+.|-. +++..++
T Consensus 146 -P~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~Gsl-R~AlslL 220 (725)
T PRK07133 146 -PKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSL-RDALSIA 220 (725)
T ss_pred -CCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-HHHHHHH
Confidence 3456777777888999999887 66 4689999999988888876655443322 223566777666543 3333333
Q ss_pred H
Q 003503 427 T 427 (815)
Q Consensus 427 ~ 427 (815)
.
T Consensus 221 e 221 (725)
T PRK07133 221 E 221 (725)
T ss_pred H
Confidence 3
No 242
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.12 E-value=1.7e-09 Score=120.14 Aligned_cols=176 Identities=21% Similarity=0.334 Sum_probs=120.2
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe----------
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 276 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~---------- 276 (815)
+++++.+|+++.|.++.++.+++.+... ..+..+||+||||+|||++++++++.+...
T Consensus 6 ~~~rp~~~~~iig~~~~~~~l~~~~~~~------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~ 73 (355)
T TIGR02397 6 RKYRPQTFEDVIGQEHIVQTLKNAIKNG------------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNE 73 (355)
T ss_pred HHhCCCcHhhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 4667889999999999999998877531 235678999999999999999999887421
Q ss_pred --------------EEEEechhhhhhhhchhHHHHHHHHHHHHh----cCCcEEEecccccccCCCCCchhHHHHHHHHH
Q 003503 277 --------------FFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 338 (815)
Q Consensus 277 --------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 338 (815)
++.+++.. ......++.+++.+.. ....+++|||+|.+.. ...+.
T Consensus 74 c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~-----------~~~~~ 136 (355)
T TIGR02397 74 CESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK-----------SAFNA 136 (355)
T ss_pred CHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH-----------HHHHH
Confidence 23333321 1123345666666543 2335999999987742 23456
Q ss_pred HHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhhHHHhhcCC
Q 003503 339 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHG 416 (815)
Q Consensus 339 Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g 416 (815)
|+..++.. ...+++|.+++.++.+.+++++ |+ ..++++.|+..+...++...++...+. ++..+..++..+.|
T Consensus 137 Ll~~le~~--~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 210 (355)
T TIGR02397 137 LLKTLEEP--PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG 210 (355)
T ss_pred HHHHHhCC--ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 67777643 2356666677888888888887 55 568999999999998888776654432 22345566666554
No 243
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.12 E-value=1.7e-09 Score=125.32 Aligned_cols=180 Identities=19% Similarity=0.302 Sum_probs=114.9
Q ss_pred ccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEEEEechh
Q 003503 215 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFLINGPE 284 (815)
Q Consensus 215 ~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l----------~~~~i~v~~~~ 284 (815)
+.|.|-++++++|..++.-.+. +-.++..++|+|+||||||++++.+.+++ ...++.|||..
T Consensus 755 D~LPhREeEIeeLasfL~paIk--------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK--------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh--------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 5688888888888877753221 11233445799999999999999998765 14568999954
Q ss_pred hhhhh---------h-------c-hhHHHHHHHHHHHHh--cCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhc
Q 003503 285 IMSKL---------A-------G-ESESNLRKAFEEAEK--NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDG 345 (815)
Q Consensus 285 l~~~~---------~-------g-~~~~~l~~vf~~a~~--~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~ 345 (815)
+...+ . + .....+..+|..... ....||+|||||.|.... ..++-.|..+..
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~--------QDVLYnLFR~~~- 897 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT--------QKVLFTLFDWPT- 897 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH--------HHHHHHHHHHhh-
Confidence 32110 0 1 122345566665422 335699999999997542 233344444332
Q ss_pred ccCCCcEEEEEecCC---CCCCCHHhhccCCcc-eEEEcCCCCHHHHHHHHHHHhcCC-ccccchhhhHHHhhc
Q 003503 346 LKSRAHVIVMGATNR---PNSIDPALRRFGRFD-REIDIGVPDEVGRLEILRIHTKNM-KLAEDVDLERVAKDT 414 (815)
Q Consensus 346 ~~~~~~vivi~atn~---~~~ld~al~r~~rf~-~~i~i~~p~~~~R~~il~~~~~~~-~l~~~~~l~~la~~t 414 (815)
.....+++||++|. ++.+++.+++ ||. .++.|++++.++..+||+..+... .+.++..+..+|+..
T Consensus 898 -~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkV 968 (1164)
T PTZ00112 898 -KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKV 968 (1164)
T ss_pred -ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Confidence 23457889999986 4456777776 443 347889999999999999877643 222333455555533
No 244
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.10 E-value=1.3e-09 Score=123.02 Aligned_cols=157 Identities=20% Similarity=0.361 Sum_probs=100.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCC
Q 003503 250 KGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREK 326 (815)
Q Consensus 250 ~~VLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~ 326 (815)
.+++||||+|+|||+|++++++.+ +..++++++.++...........-...|.... ..+++|+|||++++..+..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~- 219 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA- 219 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh-
Confidence 579999999999999999999876 56778888776654332221111112233322 3567999999999864321
Q ss_pred chhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCC---CCCHHhhccCCcc--eEEEcCCCCHHHHHHHHHHHhcCCcc
Q 003503 327 THGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN---SIDPALRRFGRFD--REIDIGVPDEVGRLEILRIHTKNMKL 401 (815)
Q Consensus 327 ~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~---~ld~al~r~~rf~--~~i~i~~p~~~~R~~il~~~~~~~~l 401 (815)
....+...++.+......+|++++..|. .+++.+++ ||. ..+.+..|+.+.|..||+..+....+
T Consensus 220 --------~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~ 289 (445)
T PRK12422 220 --------TQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSI 289 (445)
T ss_pred --------hHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 1223344444333334556665655554 45678887 664 78899999999999999987765443
Q ss_pred c-cchhhhHHHhhcCCCc
Q 003503 402 A-EDVDLERVAKDTHGYV 418 (815)
Q Consensus 402 ~-~~~~l~~la~~t~g~~ 418 (815)
. ++..+..++....+-.
T Consensus 290 ~l~~evl~~la~~~~~di 307 (445)
T PRK12422 290 RIEETALDFLIEALSSNV 307 (445)
T ss_pred CCCHHHHHHHHHhcCCCH
Confidence 2 2334566776655533
No 245
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.10 E-value=2.9e-09 Score=118.74 Aligned_cols=176 Identities=22% Similarity=0.286 Sum_probs=118.1
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeE---------
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF--------- 277 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~--------- 277 (815)
+++.+.+|+++.|.+..++.++..+... ..+.++|||||||+|||++++++++.+....
T Consensus 9 ~k~rP~~~~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~ 76 (367)
T PRK14970 9 RKYRPQTFDDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFS 76 (367)
T ss_pred HHHCCCcHHhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 5678899999999999999998887641 2356899999999999999999999875421
Q ss_pred ---EEEechhhhhhhhchhHHHHHHHHHHHHh----cCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCC
Q 003503 278 ---FLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRA 350 (815)
Q Consensus 278 ---i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~ 350 (815)
+.+++. .......++.+++.+.. ..+.++++||++.+.. ...+.|+..++.. ..
T Consensus 77 ~~~~~l~~~------~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~-----------~~~~~ll~~le~~--~~ 137 (367)
T PRK14970 77 FNIFELDAA------SNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS-----------AAFNAFLKTLEEP--PA 137 (367)
T ss_pred cceEEeccc------cCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH-----------HHHHHHHHHHhCC--CC
Confidence 112111 11123456666665432 3456999999987742 1245566666542 22
Q ss_pred cEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcc-ccchhhhHHHhhcCC
Q 003503 351 HVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AEDVDLERVAKDTHG 416 (815)
Q Consensus 351 ~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l-~~~~~l~~la~~t~g 416 (815)
..++|.+++.+..+.+++++ |+ ..+++..|+.++...++...+....+ .++..+..++..+.|
T Consensus 138 ~~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g 201 (367)
T PRK14970 138 HAIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG 201 (367)
T ss_pred ceEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC
Confidence 34555566777888888887 44 35889999988888888766554443 233456666665544
No 246
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.10 E-value=1.9e-09 Score=119.42 Aligned_cols=217 Identities=27% Similarity=0.353 Sum_probs=129.2
Q ss_pred cccChHHHHHHHHHHHHcccCChhhHhhh----CC-CCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh-hh
Q 003503 216 DVGGVRKQMAQIRELVELPLRHPQLFKSI----GV-KPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS-KL 289 (815)
Q Consensus 216 ~i~G~~~~~~~i~~~v~~~l~~~~~~~~l----~i-~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~-~~ 289 (815)
.|.|+++.++.+...+.....+-...... ++ ....++||+||||||||++|++||..++.++..+++..+.. .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 38999999998876663211110000000 11 12468999999999999999999999999998888876542 45
Q ss_pred hchh-HHHHHHHHHHH----HhcCCcEEEecccccccCCCCCch---hHHHHHHHHHHHHhhhcccC-----------CC
Q 003503 290 AGES-ESNLRKAFEEA----EKNAPSIIFIDELDSIAPKREKTH---GEVERRIVSQLLTLMDGLKS-----------RA 350 (815)
Q Consensus 290 ~g~~-~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~---~~~~~~v~~~Ll~~ld~~~~-----------~~ 350 (815)
.|.. +..+...++.+ ....+++|||||+|.+.+....+. +-....+...|+..|++... ..
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 5653 33444444422 234678999999999987543221 11112466778888865421 12
Q ss_pred cEEEEEecCCCC--------------------------C------------------------CCHHhhccCCcceEEEc
Q 003503 351 HVIVMGATNRPN--------------------------S------------------------IDPALRRFGRFDREIDI 380 (815)
Q Consensus 351 ~vivi~atn~~~--------------------------~------------------------ld~al~r~~rf~~~i~i 380 (815)
+.++|.|+|-.. . +.|++ .+|++..+.+
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEf--lgRld~Iv~f 315 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEF--IGRLPVIATL 315 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHH--hCCCCeEeec
Confidence 456666666410 0 11122 3688888888
Q ss_pred CCCCHHHHHHHHHHH----hc---------CCccc-cchhhhHHHhh--cCCCcHHHHHHHHHHHHHHhH
Q 003503 381 GVPDEVGRLEILRIH----TK---------NMKLA-EDVDLERVAKD--THGYVGSDLAALCTEAALQCI 434 (815)
Q Consensus 381 ~~p~~~~R~~il~~~----~~---------~~~l~-~~~~l~~la~~--t~g~~~~dl~~l~~~a~~~~~ 434 (815)
.+.+.+...+|+... .+ ++.+. .+.-+..++.. ...+-.+.+..++....+..+
T Consensus 316 ~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m 385 (413)
T TIGR00382 316 EKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVM 385 (413)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHH
Confidence 888888888887642 11 11121 12234555554 344555666666665544443
No 247
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.10 E-value=5.4e-09 Score=108.41 Aligned_cols=180 Identities=15% Similarity=0.253 Sum_probs=107.1
Q ss_pred CCCcccc--cChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhh
Q 003503 211 EVGYDDV--GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEI 285 (815)
Q Consensus 211 ~~~~~~i--~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l 285 (815)
+.+|++. |+.+..+..++++.. +......++|+||+|||||+|+++++... +..++.+++.++
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~------------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAA------------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHh------------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 3455552 345566666666543 12346789999999999999999999875 556788887664
Q ss_pred hhhhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcE-EEEEecCCCC--
Q 003503 286 MSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHV-IVMGATNRPN-- 362 (815)
Q Consensus 286 ~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v-ivi~atn~~~-- 362 (815)
... + .......+++|||++.+... ....|...++........ ++++++..+.
T Consensus 82 ~~~------------~--~~~~~~~~liiDdi~~l~~~-----------~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~ 136 (227)
T PRK08903 82 LLA------------F--DFDPEAELYAVDDVERLDDA-----------QQIALFNLFNRVRAHGQGALLVAGPAAPLAL 136 (227)
T ss_pred HHH------------H--hhcccCCEEEEeChhhcCch-----------HHHHHHHHHHHHHHcCCcEEEEeCCCCHHhC
Confidence 321 1 11234569999999986421 123455555554444443 4444433332
Q ss_pred CCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhhHHHhhcCCCcHHHHHHHHHH
Q 003503 363 SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYVGSDLAALCTE 428 (815)
Q Consensus 363 ~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~ 428 (815)
.+.+.+.+..+....+.+++|+...+..++........+. ++.-+..++....| ....+..++..
T Consensus 137 ~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~ 202 (227)
T PRK08903 137 PLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDA 202 (227)
T ss_pred CCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHH
Confidence 3456666522225789999999998888888765443322 22345666664443 33344444443
No 248
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.09 E-value=5.3e-09 Score=124.62 Aligned_cols=133 Identities=26% Similarity=0.331 Sum_probs=90.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh------hhhhh----chhHHHHHHHHHHHHhcCCcEEEeccc
Q 003503 248 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEI------MSKLA----GESESNLRKAFEEAEKNAPSIIFIDEL 317 (815)
Q Consensus 248 ~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l------~~~~~----g~~~~~l~~vf~~a~~~~p~il~iDEi 317 (815)
....+||.||..||||+++..+|.+.|..|+.||..+- ++.|+ |...-+-+.+....+.+ -.+++||+
T Consensus 887 ~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G--yWIVLDEL 964 (4600)
T COG5271 887 SNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG--YWIVLDEL 964 (4600)
T ss_pred cCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC--cEEEeecc
Confidence 34569999999999999999999999999999987543 22332 22222333444444433 37899998
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHhhhccc------------CCCcEEEEEecCCCC------CCCHHhhccCCcceEEE
Q 003503 318 DSIAPKREKTHGEVERRIVSQLLTLMDGLK------------SRAHVIVMGATNRPN------SIDPALRRFGRFDREID 379 (815)
Q Consensus 318 d~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~------------~~~~vivi~atn~~~------~ld~al~r~~rf~~~i~ 379 (815)
...+ ..+.+.|..++|.-+ .++.+.+.+|.|+|. .+..|+|. || .+++
T Consensus 965 NLAp-----------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RF-lE~h 1030 (4600)
T COG5271 965 NLAP-----------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RF-LEMH 1030 (4600)
T ss_pred ccCc-----------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hh-Hhhh
Confidence 7543 236777888887532 456778888888875 44667776 77 4456
Q ss_pred cCCCCHHHHHHHHHHHh
Q 003503 380 IGVPDEVGRLEILRIHT 396 (815)
Q Consensus 380 i~~p~~~~R~~il~~~~ 396 (815)
+..-.+.+...||...+
T Consensus 1031 FddipedEle~ILh~rc 1047 (4600)
T COG5271 1031 FDDIPEDELEEILHGRC 1047 (4600)
T ss_pred cccCcHHHHHHHHhccC
Confidence 66556777777776433
No 249
>PHA02244 ATPase-like protein
Probab=99.09 E-value=2.9e-09 Score=114.59 Aligned_cols=125 Identities=22% Similarity=0.314 Sum_probs=80.2
Q ss_pred CcceEEeCCCCCChhHHHHHHHHHhCCcEEEEecc----chhhhccCccHHHH-HHHHHHHhhCCCeEEEEecchhhhhc
Q 003503 522 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP----ELLTMWFGESEANV-REIFDKARQSAPCVLFFDELDSIATQ 596 (815)
Q Consensus 522 ~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~----~l~~~~~g~se~~i-~~~F~~a~~~~p~ilfiDEid~l~~~ 596 (815)
...++|+||||||||++|+++|..++.+|+.++.- ++.+ ++.....-. ..+++..+ ...++||||++.+.+
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~~--~GgvLiLDEId~a~p- 194 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAFK--KGGLFFIDEIDASIP- 194 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccccchHHHHHhh--cCCEEEEeCcCcCCH-
Confidence 44699999999999999999999999999998742 1111 111111111 12222222 346999999998632
Q ss_pred cCCCCCCCCchHHHHHHHHHhc-----cccC-CCCCcEEEEEecCCC-----------CCCCccccCCCCCcceeeccCC
Q 003503 597 RGSSTGDAGGAADRVLNQLLTE-----MDGM-NAKKTVFIIGATNRP-----------DIIDPALLRPGRLDQLIYIPLP 659 (815)
Q Consensus 597 r~~~~~~~~~~~~~vl~~lL~~-----ld~~-~~~~~v~vi~aTn~~-----------~~ld~allr~gRf~~~i~~~~p 659 (815)
.....++.++.. .++. ....++.+|+|+|.+ ..|++|++. ||- .|+|+.|
T Consensus 195 ----------~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp 261 (383)
T PHA02244 195 ----------EALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYD 261 (383)
T ss_pred ----------HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCC
Confidence 122333444321 1111 123578999999984 457999998 995 7999999
Q ss_pred CHHH
Q 003503 660 DEAS 663 (815)
Q Consensus 660 ~~~~ 663 (815)
+..+
T Consensus 262 ~~~E 265 (383)
T PHA02244 262 EKIE 265 (383)
T ss_pred cHHH
Confidence 8543
No 250
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.08 E-value=1.4e-09 Score=122.76 Aligned_cols=168 Identities=26% Similarity=0.370 Sum_probs=114.9
Q ss_pred CCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchhhhccCccHHHHHHHHHHH--------hhCCCeEEEEecch
Q 003503 520 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA--------RQSAPCVLFFDELD 591 (815)
Q Consensus 520 ~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~~g~se~~i~~~F~~a--------~~~~p~ilfiDEid 591 (815)
++.+-+||+||||.||||||+.+|+.+|..++.|++++-. +...+++....| ..+.|.+|++||||
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeR------t~~~v~~kI~~avq~~s~l~adsrP~CLViDEID 397 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDER------TAPMVKEKIENAVQNHSVLDADSRPVCLVIDEID 397 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccc------cHHHHHHHHHHHHhhccccccCCCcceEEEeccc
Confidence 3445589999999999999999999999999999998843 233333322222 12568999999998
Q ss_pred hhhhccCCCCCCCCchHHHHHHHHHhccc-------cCCCC---------C---cEEEEEecCCCCCCCccccCCCCCcc
Q 003503 592 SIATQRGSSTGDAGGAADRVLNQLLTEMD-------GMNAK---------K---TVFIIGATNRPDIIDPALLRPGRLDQ 652 (815)
Q Consensus 592 ~l~~~r~~~~~~~~~~~~~vl~~lL~~ld-------~~~~~---------~---~v~vi~aTn~~~~ld~allr~gRf~~ 652 (815)
--. ...++.+|..+. |-... . .--|||.+| +..-|||.----|..
T Consensus 398 Ga~--------------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICN--dLYaPaLR~Lr~~A~ 461 (877)
T KOG1969|consen 398 GAP--------------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICN--DLYAPALRPLRPFAE 461 (877)
T ss_pred CCc--------------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEec--CccchhhhhcccceE
Confidence 742 223333333333 11110 0 135888888 466787742215889
Q ss_pred eeeccCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 003503 653 LIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRE 712 (815)
Q Consensus 653 ~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~l~~~a~~~a~~~ 712 (815)
+|+|++|......+=|+..+++.++. .|...|...++ ++..||+..++.....|...
T Consensus 462 ii~f~~p~~s~Lv~RL~~IC~rE~mr--~d~~aL~~L~e-l~~~DIRsCINtLQfLa~~~ 518 (877)
T KOG1969|consen 462 IIAFVPPSQSRLVERLNEICHRENMR--ADSKALNALCE-LTQNDIRSCINTLQFLASNV 518 (877)
T ss_pred EEEecCCChhHHHHHHHHHHhhhcCC--CCHHHHHHHHH-HhcchHHHHHHHHHHHHHhc
Confidence 99999999988888888888777765 34444544444 45569999999999888754
No 251
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.08 E-value=8.8e-10 Score=124.00 Aligned_cols=195 Identities=24% Similarity=0.343 Sum_probs=144.3
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcE-------E----
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF-------I---- 551 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~-------i---- 551 (815)
..-.|+++.|++.+.+.|...+... +...+.||.||.|||||++||.+|..+++.- .
T Consensus 11 RP~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 11 RPKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred CcccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 3557899999999999998876542 3345799999999999999999999876431 0
Q ss_pred --EEe-c--cchhhh--ccCccHHHHHHHHHHHhh----CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccc
Q 003503 552 --SVK-G--PELLTM--WFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMD 620 (815)
Q Consensus 552 --~v~-~--~~l~~~--~~g~se~~i~~~F~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld 620 (815)
.++ + .|++-. -...+-..+|++-+++.. ..+.|.+|||++.|- ....|.||..++
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS--------------~~afNALLKTLE 144 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS--------------KQAFNALLKTLE 144 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh--------------HHHHHHHhcccc
Confidence 011 0 111100 011234457777777643 446899999999973 457899999998
Q ss_pred cCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHcCCCCHHHHH
Q 003503 621 GMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVD-LSALARYTHGFSGADIT 699 (815)
Q Consensus 621 ~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~-~~~la~~t~g~sg~di~ 699 (815)
. +...|++|.||..|..+.+-+++ |+. ++.|...+.++....+...+.+..+.-+.+ +..+|+..+| |-+|..
T Consensus 145 E--PP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDal 218 (515)
T COG2812 145 E--PPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDAL 218 (515)
T ss_pred c--CccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHH
Confidence 4 55678888889899999999998 874 788899999999999999998888775554 5556666554 778988
Q ss_pred HHHHHHHHHH
Q 003503 700 EVCQRACKYA 709 (815)
Q Consensus 700 ~l~~~a~~~a 709 (815)
.++..|....
T Consensus 219 slLDq~i~~~ 228 (515)
T COG2812 219 SLLDQAIAFG 228 (515)
T ss_pred HHHHHHHHcc
Confidence 8888887664
No 252
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.08 E-value=3.9e-09 Score=120.47 Aligned_cols=193 Identities=21% Similarity=0.271 Sum_probs=122.5
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-------E-E
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-------F-F 278 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~-------~-i 278 (815)
.++++.+|+++.|++..++.++..+... ..+..+||+||+|+||||+|+.+|..++.. . .
T Consensus 8 ~kyRP~~f~diiGq~~i~~~L~~~i~~~------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~ 75 (486)
T PRK14953 8 RKYRPKFFKEVIGQEIVVRILKNAVKLQ------------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGK 75 (486)
T ss_pred HhhCCCcHHHccChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCc
Confidence 3567889999999999999998887631 224468999999999999999999987531 0 0
Q ss_pred EEechhhhh----------hhhchhHHHHHHHHHHHH----hcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhh
Q 003503 279 LINGPEIMS----------KLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMD 344 (815)
Q Consensus 279 ~v~~~~l~~----------~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld 344 (815)
..+|..+.. ......-..++.+...+. .....+++|||+|.+.. ...+.|+..++
T Consensus 76 c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~-----------~a~naLLk~LE 144 (486)
T PRK14953 76 CENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK-----------EAFNALLKTLE 144 (486)
T ss_pred cHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH-----------HHHHHHHHHHh
Confidence 011111111 000111233455544433 23456999999997742 23456777776
Q ss_pred cccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhhHHHhhcCCCcHHHHH
Q 003503 345 GLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYVGSDLA 423 (815)
Q Consensus 345 ~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~ 423 (815)
.. ...+++|.+|+.++.+.+++++ |+ ..+.+..++..+...++...++...+. ++..+..++..+.|- .+++.
T Consensus 145 ep--p~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~-lr~al 218 (486)
T PRK14953 145 EP--PPRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGG-MRDAA 218 (486)
T ss_pred cC--CCCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHH
Confidence 53 2345555566777888888876 55 468899999999998888777655443 223456666666553 33444
Q ss_pred HHHHH
Q 003503 424 ALCTE 428 (815)
Q Consensus 424 ~l~~~ 428 (815)
.++..
T Consensus 219 ~~Ldk 223 (486)
T PRK14953 219 SLLDQ 223 (486)
T ss_pred HHHHH
Confidence 44433
No 253
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.08 E-value=2.5e-10 Score=112.26 Aligned_cols=111 Identities=28% Similarity=0.418 Sum_probs=76.5
Q ss_pred CCcceEEeCCCCCChhHHHHHHHHHhCC----cEEEEeccchhhhccCccHHHHHHHHHH------HhhCCCeEEEEecc
Q 003503 521 PSKGVLFYGPPGCGKTLLAKAIANECQA----NFISVKGPELLTMWFGESEANVREIFDK------ARQSAPCVLFFDEL 590 (815)
Q Consensus 521 ~~~gilL~GppGtGKT~lakala~~~~~----~~i~v~~~~l~~~~~g~se~~i~~~F~~------a~~~~p~ilfiDEi 590 (815)
|...++|+||+|||||.+|+++|..+.. +++.++++++... ++.+..+..++.. .... .|||||||
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~--gVVllDEi 77 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEG--GVVLLDEI 77 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHH--TEEEEETG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccch--hhhhhHHH
Confidence 3446999999999999999999999995 8999999988651 1112222222221 1122 29999999
Q ss_pred hhhhhccCCCCCCCCchHHHHHHHHHhccccCC---------CCCcEEEEEecCCCC
Q 003503 591 DSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN---------AKKTVFIIGATNRPD 638 (815)
Q Consensus 591 d~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~---------~~~~v~vi~aTn~~~ 638 (815)
|+..+.. ....+-....+.+.||+.||+.. +.+++++|+|+|--.
T Consensus 78 dKa~~~~---~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 78 DKAHPSN---SGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp GGCSHTT---TTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred hhccccc---cccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 9998751 12223445678999999998642 235789999999643
No 254
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.07 E-value=4e-09 Score=122.19 Aligned_cols=187 Identities=19% Similarity=0.271 Sum_probs=125.1
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe----------
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 276 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~---------- 276 (815)
.++++-+|++|.|++..++.++..+... ..+..+||+||+|+|||++|+++|+.+...
T Consensus 8 ~kyRP~~f~diiGqe~iv~~L~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~ 75 (563)
T PRK06647 8 TKRRPRDFNSLEGQDFVVETLKHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGE 75 (563)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCcc
Confidence 3567889999999999999998887631 224569999999999999999999987532
Q ss_pred --------------EEEEechhhhhhhhchhHHHHHHHHHHH----HhcCCcEEEecccccccCCCCCchhHHHHHHHHH
Q 003503 277 --------------FFLINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 338 (815)
Q Consensus 277 --------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 338 (815)
++.+++.. ...-..++.+.+.+ ......+++|||+|.+.. ...+.
T Consensus 76 C~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~-----------~a~na 138 (563)
T PRK06647 76 CSSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN-----------SAFNA 138 (563)
T ss_pred chHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH-----------HHHHH
Confidence 12222211 01123445554332 234556999999998742 24566
Q ss_pred HHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhhHHHhhcCCC
Q 003503 339 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 417 (815)
Q Consensus 339 Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~ 417 (815)
|+..++.. ...+++|.+|+.+..+.+++++ |+ ..+++..++.++....++..+....+. ++..+..++....|
T Consensus 139 LLK~LEep--p~~~vfI~~tte~~kL~~tI~S--Rc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G- 212 (563)
T PRK06647 139 LLKTIEEP--PPYIVFIFATTEVHKLPATIKS--RC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG- 212 (563)
T ss_pred HHHhhccC--CCCEEEEEecCChHHhHHHHHH--hc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 77777642 3456777777778889888887 55 357889898888888887766544332 23446667776666
Q ss_pred cHHHHHHHHHH
Q 003503 418 VGSDLAALCTE 428 (815)
Q Consensus 418 ~~~dl~~l~~~ 428 (815)
..+++..++..
T Consensus 213 dlR~alslLdk 223 (563)
T PRK06647 213 SVRDAYTLFDQ 223 (563)
T ss_pred CHHHHHHHHHH
Confidence 34444444443
No 255
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.07 E-value=5.7e-09 Score=118.35 Aligned_cols=176 Identities=19% Similarity=0.290 Sum_probs=118.7
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe----------
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 276 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~---------- 276 (815)
+++++.+|++|.|.+..++.++..+... ..+..+||+||+|+|||++|+++|+.+...
T Consensus 9 ~kyRP~~~~diiGq~~~v~~L~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~ 76 (451)
T PRK06305 9 RKYRPQTFSEILGQDAVVAVLKNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCN 76 (451)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCc
Confidence 4678899999999999999998887631 234569999999999999999999987431
Q ss_pred ---------------EEEEechhhhhhhhchhHHHHHHHHHHH----HhcCCcEEEecccccccCCCCCchhHHHHHHHH
Q 003503 277 ---------------FFLINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDELDSIAPKREKTHGEVERRIVS 337 (815)
Q Consensus 277 ---------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~ 337 (815)
++.+++... ..-..++.+.+.. ......++||||+|.+.. ...+
T Consensus 77 ~c~~C~~i~~~~~~d~~~i~g~~~------~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~-----------~~~n 139 (451)
T PRK06305 77 QCASCKEISSGTSLDVLEIDGASH------RGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK-----------EAFN 139 (451)
T ss_pred ccHHHHHHhcCCCCceEEeecccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH-----------HHHH
Confidence 223332111 0112333333222 234567999999988742 2346
Q ss_pred HHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhhHHHhhcCC
Q 003503 338 QLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHG 416 (815)
Q Consensus 338 ~Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g 416 (815)
.|+..++... ..+++|.+|+.+..+.+.+++ |+ ..+++..++.++-...+...++...+. ++..+..++..+.|
T Consensus 140 ~LLk~lEep~--~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g 214 (451)
T PRK06305 140 SLLKTLEEPP--QHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG 214 (451)
T ss_pred HHHHHhhcCC--CCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 6777777643 355666677888888888887 55 468999999988887777665443322 33346667766655
No 256
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.07 E-value=2.6e-09 Score=124.76 Aligned_cols=185 Identities=20% Similarity=0.294 Sum_probs=124.4
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe----------
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 276 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~---------- 276 (815)
.++++-+|++|.|.+..++.|+..+... ..+..+||+||+|+||||+++++++.+...
T Consensus 8 ~k~RP~~f~~iiGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~ 75 (576)
T PRK14965 8 RKYRPQTFSDLTGQEHVSRTLQNAIDTG------------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNV 75 (576)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCc
Confidence 4577889999999999999998887641 234568999999999999999999987532
Q ss_pred --------------EEEEechhhhhhhhchhHHHHHHHHHHHHh----cCCcEEEecccccccCCCCCchhHHHHHHHHH
Q 003503 277 --------------FFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 338 (815)
Q Consensus 277 --------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 338 (815)
++.+++.. ...-..++.+...+.. ....|+||||+|.+.. ...+.
T Consensus 76 c~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~-----------~a~na 138 (576)
T PRK14965 76 CPPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST-----------NAFNA 138 (576)
T ss_pred cHHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH-----------HHHHH
Confidence 22333221 1122345666555432 2335999999998752 23567
Q ss_pred HHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhhHHHhhcCCC
Q 003503 339 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 417 (815)
Q Consensus 339 Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~ 417 (815)
|+..|+.. ...+++|.+|+.++.+.+.+++ |+ ..+++..++..+-...+...++...+. ++..+..++..+.|-
T Consensus 139 LLk~LEep--p~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~ 213 (576)
T PRK14965 139 LLKTLEEP--PPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGS 213 (576)
T ss_pred HHHHHHcC--CCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC
Confidence 88888753 3466777778888999998887 54 457888888877777776655444332 334566777777663
Q ss_pred cHHHHHHHH
Q 003503 418 VGSDLAALC 426 (815)
Q Consensus 418 ~~~dl~~l~ 426 (815)
. ++...++
T Consensus 214 l-r~al~~L 221 (576)
T PRK14965 214 M-RDSLSTL 221 (576)
T ss_pred H-HHHHHHH
Confidence 3 3433333
No 257
>PRK09087 hypothetical protein; Validated
Probab=99.06 E-value=1.6e-09 Score=111.72 Aligned_cols=149 Identities=19% Similarity=0.221 Sum_probs=95.9
Q ss_pred ceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchhhhccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCC
Q 003503 524 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGD 603 (815)
Q Consensus 524 gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~ 603 (815)
.++|+||+|||||+|+++++...+..++ +..++.. .++..... .++++||++.+..
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i--~~~~~~~-----------~~~~~~~~---~~l~iDDi~~~~~-------- 101 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDALLI--HPNEIGS-----------DAANAAAE---GPVLIEDIDAGGF-------- 101 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCEEe--cHHHcch-----------HHHHhhhc---CeEEEECCCCCCC--------
Confidence 4899999999999999999988765543 2222211 11111222 3888999997621
Q ss_pred CCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCCC---CccccCCCCCc--ceeeccCCCHHHHHHHHHHHhccCCCC
Q 003503 604 AGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDII---DPALLRPGRLD--QLIYIPLPDEASRLQIFKACLRKSPIS 678 (815)
Q Consensus 604 ~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~l---d~allr~gRf~--~~i~~~~p~~~~r~~Il~~~l~~~~~~ 678 (815)
. . ..|+..++.....++.+||+++..|..+ .+.+.+ ||. .++.+.+|+.+.|.+|++.+++..++.
T Consensus 102 -~---~---~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~ 172 (226)
T PRK09087 102 -D---E---TGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLY 172 (226)
T ss_pred -C---H---HHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 0 1 2244444444445567788777666543 577876 875 788999999999999999999776544
Q ss_pred C-cccHHHHHHHcCCCCHHHHHHHHHHHH
Q 003503 679 P-DVDLSALARYTHGFSGADITEVCQRAC 706 (815)
Q Consensus 679 ~-~~~~~~la~~t~g~sg~di~~l~~~a~ 706 (815)
- +.-+..|+++..+ +-+.+..++....
T Consensus 173 l~~ev~~~La~~~~r-~~~~l~~~l~~L~ 200 (226)
T PRK09087 173 VDPHVVYYLVSRMER-SLFAAQTIVDRLD 200 (226)
T ss_pred CCHHHHHHHHHHhhh-hHHHHHHHHHHHH
Confidence 2 2236777776552 4444444444443
No 258
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.06 E-value=6.7e-10 Score=104.79 Aligned_cols=126 Identities=34% Similarity=0.477 Sum_probs=83.3
Q ss_pred cceEEeCCCCCChhHHHHHHHHHhCCc---EEEEeccchhhh--------------ccCccHHHHHHHHHHHhhCCCeEE
Q 003503 523 KGVLFYGPPGCGKTLLAKAIANECQAN---FISVKGPELLTM--------------WFGESEANVREIFDKARQSAPCVL 585 (815)
Q Consensus 523 ~gilL~GppGtGKT~lakala~~~~~~---~i~v~~~~l~~~--------------~~g~se~~i~~~F~~a~~~~p~il 585 (815)
..++|+||||||||++++.+|..+... ++.+++...... .........+.+++.++...+.++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 469999999999999999999999775 777777654321 123445677889999998888999
Q ss_pred EEecchhhhhccCCCCCCCCchHHHHHHHH--HhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCC
Q 003503 586 FFDELDSIATQRGSSTGDAGGAADRVLNQL--LTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 659 (815)
Q Consensus 586 fiDEid~l~~~r~~~~~~~~~~~~~vl~~l--L~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p 659 (815)
|+||++.+..... ....... ...........+..+|+++|......+..+++ |++..+.++.+
T Consensus 83 iiDei~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 147 (148)
T smart00382 83 ILDEITSLLDAEQ----------EALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR-RFDRRIVLLLI 147 (148)
T ss_pred EEECCcccCCHHH----------HHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh-ccceEEEecCC
Confidence 9999999864321 0000000 00011112234568888888733444444443 88888887654
No 259
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.06 E-value=1.4e-09 Score=117.88 Aligned_cols=161 Identities=22% Similarity=0.370 Sum_probs=104.6
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCC-------cEEEE-e
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISV-K 554 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~-------~~i~v-~ 554 (815)
+...|.+|.|++++|..|.-.+..| ...|+||.|++|||||++|++++..+.. +|... .
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 4568999999999999887655432 1247999999999999999999888632 22200 0
Q ss_pred ccchh-----h---------------hc----cCccHHH------HHHHHHHHh---------hCCCeEEEEecchhhhh
Q 003503 555 GPELL-----T---------------MW----FGESEAN------VREIFDKAR---------QSAPCVLFFDELDSIAT 595 (815)
Q Consensus 555 ~~~l~-----~---------------~~----~g~se~~------i~~~F~~a~---------~~~p~ilfiDEid~l~~ 595 (815)
.++.. . .+ .|.++.. +...|.... +..-.+||+||++.+.+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~ 158 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD 158 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH
Confidence 01110 0 00 1222221 112222111 11125999999999743
Q ss_pred ccCCCCCCCCchHHHHHHHHHhcccc---------CC--CCCcEEEEEecCCCC-CCCccccCCCCCcceeeccCCC-HH
Q 003503 596 QRGSSTGDAGGAADRVLNQLLTEMDG---------MN--AKKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLPD-EA 662 (815)
Q Consensus 596 ~r~~~~~~~~~~~~~vl~~lL~~ld~---------~~--~~~~v~vi~aTn~~~-~ld~allr~gRf~~~i~~~~p~-~~ 662 (815)
.+.+.||..|+. .. ...++++|+|.|..+ .+.++++. ||...+.+..|+ .+
T Consensus 159 --------------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~ 222 (350)
T CHL00081 159 --------------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPE 222 (350)
T ss_pred --------------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChH
Confidence 345556665543 11 124688888888765 58899998 999999999997 59
Q ss_pred HHHHHHHHHh
Q 003503 663 SRLQIFKACL 672 (815)
Q Consensus 663 ~r~~Il~~~l 672 (815)
.+.+|++...
T Consensus 223 ~e~~il~~~~ 232 (350)
T CHL00081 223 LRVKIVEQRT 232 (350)
T ss_pred HHHHHHHhhh
Confidence 9999998864
No 260
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.05 E-value=8.6e-10 Score=120.84 Aligned_cols=132 Identities=28% Similarity=0.426 Sum_probs=89.7
Q ss_pred CCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchhh--hccCccHHHH------------HHHHHHHhhCCCeEEE
Q 003503 521 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT--MWFGESEANV------------REIFDKARQSAPCVLF 586 (815)
Q Consensus 521 ~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~~--~~~g~se~~i------------~~~F~~a~~~~p~ilf 586 (815)
...++||.||||||||++|+++|..++.+|+.|.+..-+. .-+|...-.. +.+|...+ +++|
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill 117 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILL 117 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEE
Confidence 3467999999999999999999999999999998753321 1112111111 11222222 4999
Q ss_pred EecchhhhhccCCCCCCCCchHHHHHHHHHhcccc----------CCCCCcEEEEEecCC-----CCCCCccccCCCCCc
Q 003503 587 FDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDG----------MNAKKTVFIIGATNR-----PDIIDPALLRPGRLD 651 (815)
Q Consensus 587 iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~----------~~~~~~v~vi~aTn~-----~~~ld~allr~gRf~ 651 (815)
+|||+... ..+.+.||..|+. +.-...++||+|+|. -..|.+|+++ ||.
T Consensus 118 ~DEInra~--------------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~ 181 (329)
T COG0714 118 LDEINRAP--------------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFL 181 (329)
T ss_pred EeccccCC--------------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEE
Confidence 99998752 3456666666664 223357889999994 3457899998 999
Q ss_pred ceeeccCC-CHHHHHHHHHHHh
Q 003503 652 QLIYIPLP-DEASRLQIFKACL 672 (815)
Q Consensus 652 ~~i~~~~p-~~~~r~~Il~~~l 672 (815)
..+++++| +..+...++....
T Consensus 182 ~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 182 LRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred EEEecCCCCchHHHHHHHHhCc
Confidence 99999999 5555555554444
No 261
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.05 E-value=5.4e-09 Score=114.18 Aligned_cols=176 Identities=23% Similarity=0.286 Sum_probs=114.0
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-----eEEEEe
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA-----FFFLIN 281 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~-----~~i~v~ 281 (815)
+++.+.+|+++.|.+.+++.++.++.. ....+++|+||||||||++++++++.+.. .++.++
T Consensus 9 ~kyrP~~~~~~~g~~~~~~~l~~~i~~-------------~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~ 75 (319)
T PRK00440 9 EKYRPRTLDEIVGQEEIVERLKSYVKE-------------KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELN 75 (319)
T ss_pred hhhCCCcHHHhcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEec
Confidence 467788999999999999999888753 11235899999999999999999998732 234444
Q ss_pred chhhhhhhhchhHHHHHHHHHHHHh------cCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEE
Q 003503 282 GPEIMSKLAGESESNLRKAFEEAEK------NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVM 355 (815)
Q Consensus 282 ~~~l~~~~~g~~~~~l~~vf~~a~~------~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi 355 (815)
+.+..+ ...++..+..... ..+.++++||++.+... ....|...++..... ..+|
T Consensus 76 ~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~-----------~~~~L~~~le~~~~~--~~lI 136 (319)
T PRK00440 76 ASDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD-----------AQQALRRTMEMYSQN--TRFI 136 (319)
T ss_pred cccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH-----------HHHHHHHHHhcCCCC--CeEE
Confidence 332111 1112222222211 23458999999887421 234566666654443 3344
Q ss_pred EecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcc-ccchhhhHHHhhcCCC
Q 003503 356 GATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AEDVDLERVAKDTHGY 417 (815)
Q Consensus 356 ~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l-~~~~~l~~la~~t~g~ 417 (815)
.+++.+..+.+.+++ |+. .++++.++.++...+++.+++...+ ..+..+..++..+.|.
T Consensus 137 l~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd 196 (319)
T PRK00440 137 LSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGD 196 (319)
T ss_pred EEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 456666777777776 543 5889999999988888877655443 2334577777776654
No 262
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=4.8e-09 Score=108.80 Aligned_cols=83 Identities=24% Similarity=0.400 Sum_probs=63.3
Q ss_pred eEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCC--------CCCcEEEEEec----CCCCCCCccccCCCCC
Q 003503 583 CVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN--------AKKTVFIIGAT----NRPDIIDPALLRPGRL 650 (815)
Q Consensus 583 ~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~--------~~~~v~vi~aT----n~~~~ld~allr~gRf 650 (815)
.|+||||||.++.+.+.+..+ -.-.-|...||-.++|-. ..+.+++||+. ..|+.|=|.|. |||
T Consensus 252 GIvFIDEIDKIa~~~~~g~~d--vSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRf 327 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPD--VSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRF 327 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCC--cchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCC
Confidence 599999999999775432222 223447778888888752 34678888887 57888889887 799
Q ss_pred cceeeccCCCHHHHHHHHH
Q 003503 651 DQLIYIPLPDEASRLQIFK 669 (815)
Q Consensus 651 ~~~i~~~~p~~~~r~~Il~ 669 (815)
.-++++...+.+.-..||.
T Consensus 328 PIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 328 PIRVELDALTKEDFERILT 346 (444)
T ss_pred ceEEEcccCCHHHHHHHHc
Confidence 9999999999988887774
No 263
>PRK05642 DNA replication initiation factor; Validated
Probab=99.04 E-value=6.2e-09 Score=108.18 Aligned_cols=148 Identities=18% Similarity=0.277 Sum_probs=99.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCC
Q 003503 249 PKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKRE 325 (815)
Q Consensus 249 ~~~VLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~ 325 (815)
...++|+||+|||||+|++++++++ +..+++++..++.... ..+.+... ...+|+|||++.+..+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~--~~d~LiiDDi~~~~~~~- 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLE--QYELVCLDDLDVIAGKA- 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhh--hCCEEEEechhhhcCCh-
Confidence 3679999999999999999998764 5667888877765421 12222222 23589999999875432
Q ss_pred CchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCC---CHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcC--Cc
Q 003503 326 KTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI---DPALRRFGRFDREIDIGVPDEVGRLEILRIHTKN--MK 400 (815)
Q Consensus 326 ~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~l---d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~--~~ 400 (815)
.....|..+++.+......++++++..|..+ .+.+++.......+.+..|+.+.+.++++..... +.
T Consensus 114 --------~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~ 185 (234)
T PRK05642 114 --------DWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLH 185 (234)
T ss_pred --------HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 1234566777666666677788777666533 5778873223567789999999999999855443 33
Q ss_pred cccchhhhHHHhhcCC
Q 003503 401 LAEDVDLERVAKDTHG 416 (815)
Q Consensus 401 l~~~~~l~~la~~t~g 416 (815)
+. +.-+..++....+
T Consensus 186 l~-~ev~~~L~~~~~~ 200 (234)
T PRK05642 186 LT-DEVGHFILTRGTR 200 (234)
T ss_pred CC-HHHHHHHHHhcCC
Confidence 33 3345666666554
No 264
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.04 E-value=8.2e-11 Score=112.11 Aligned_cols=109 Identities=28% Similarity=0.399 Sum_probs=69.5
Q ss_pred ceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccch------hhhccC---ccHHHHHHHHHHHhhCCCeEEEEecchhhh
Q 003503 524 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL------LTMWFG---ESEANVREIFDKARQSAPCVLFFDELDSIA 594 (815)
Q Consensus 524 gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l------~~~~~g---~se~~i~~~F~~a~~~~p~ilfiDEid~l~ 594 (815)
+|+|+||||||||++++.+|..++.+++.+.++.. ...|.- ..+-.-..+.+..+ .++++||||++..-
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCcccCC
Confidence 48999999999999999999999999988876543 222221 11000000111111 45899999998852
Q ss_pred hccCCCCCCCCchHHHHHHHHHhccccCC-----------CCC------cEEEEEecCCCC----CCCccccCCCCC
Q 003503 595 TQRGSSTGDAGGAADRVLNQLLTEMDGMN-----------AKK------TVFIIGATNRPD----IIDPALLRPGRL 650 (815)
Q Consensus 595 ~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----------~~~------~v~vi~aTn~~~----~ld~allr~gRf 650 (815)
..+++.|+..++.-. ... ++.+|+|+|..+ .+++|+++ ||
T Consensus 79 --------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 --------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp --------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred --------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 345555555554311 011 389999999998 89999998 87
No 265
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.03 E-value=8e-09 Score=117.82 Aligned_cols=189 Identities=18% Similarity=0.209 Sum_probs=125.9
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-----------
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA----------- 275 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~----------- 275 (815)
+++++.+|+++.|++..++.++..+... .-+..+||+||+|+|||++|+++++.+..
T Consensus 6 ~KyRP~~fdeiiGqe~v~~~L~~~I~~g------------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~ 73 (535)
T PRK08451 6 LKYRPKHFDELIGQESVSKTLSLALDNN------------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDT 73 (535)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 4678899999999999999998887531 23456799999999999999999988731
Q ss_pred -------------eEEEEechhhhhhhhchhHHHHHHHHHHHHh----cCCcEEEecccccccCCCCCchhHHHHHHHHH
Q 003503 276 -------------FFFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 338 (815)
Q Consensus 276 -------------~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 338 (815)
.++.+++.. ...-..++.+...... ....|++|||+|.+.. ...+.
T Consensus 74 C~~C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~-----------~A~NA 136 (535)
T PRK08451 74 CIQCQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK-----------EAFNA 136 (535)
T ss_pred cHHHHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHH
Confidence 122222211 0012345555544321 2235899999988742 34567
Q ss_pred HHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhhHHHhhcCCC
Q 003503 339 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 417 (815)
Q Consensus 339 Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~ 417 (815)
|+..++... ..+.+|.+|+.+..+.+++++ |. ..+++..++.++-...+...++...+. ++..+..++....|
T Consensus 137 LLK~LEEpp--~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G- 210 (535)
T PRK08451 137 LLKTLEEPP--SYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG- 210 (535)
T ss_pred HHHHHhhcC--CceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 788887653 345555566778899999988 64 578999999888877777665543332 23456677776665
Q ss_pred cHHHHHHHHHHHH
Q 003503 418 VGSDLAALCTEAA 430 (815)
Q Consensus 418 ~~~dl~~l~~~a~ 430 (815)
..+++..++..+.
T Consensus 211 dlR~alnlLdqai 223 (535)
T PRK08451 211 SLRDTLTLLDQAI 223 (535)
T ss_pred cHHHHHHHHHHHH
Confidence 4555555555443
No 266
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.03 E-value=1.3e-09 Score=118.15 Aligned_cols=155 Identities=23% Similarity=0.318 Sum_probs=98.8
Q ss_pred ccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhC-------CcEE-------
Q 003503 486 SWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-------ANFI------- 551 (815)
Q Consensus 486 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~-------~~~i------- 551 (815)
.|..|.|++++|..|.-.+..| ...+++|.|+||+||||+++++++.+. .++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 4678999999998875443322 134699999999999999999998872 2111
Q ss_pred ------EE--e-------------ccchhh-----hccCcc--HHHH--------HHHHHHHhhCCCeEEEEecchhhhh
Q 003503 552 ------SV--K-------------GPELLT-----MWFGES--EANV--------REIFDKARQSAPCVLFFDELDSIAT 595 (815)
Q Consensus 552 ------~v--~-------------~~~l~~-----~~~g~s--e~~i--------~~~F~~a~~~~p~ilfiDEid~l~~ 595 (815)
.. . -.++-. ..+|.. ++.+ ..++.+|. ..++|+||++.+.
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~---~GvL~lDEi~~L~- 144 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARAN---RGILYIDEVNLLE- 144 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceecc---CCEEEecChHhCC-
Confidence 00 0 011110 122221 0110 01222222 2599999999973
Q ss_pred ccCCCCCCCCchHHHHHHHHHhccccCC-----------CCCcEEEEEecCCCC-CCCccccCCCCCcceeeccCCCH-H
Q 003503 596 QRGSSTGDAGGAADRVLNQLLTEMDGMN-----------AKKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLPDE-A 662 (815)
Q Consensus 596 ~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----------~~~~v~vi~aTn~~~-~ld~allr~gRf~~~i~~~~p~~-~ 662 (815)
..+.+.|+..|+.-. ...++++|+|+|..+ .+.++++. ||...+.++.|+. +
T Consensus 145 -------------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~e 209 (337)
T TIGR02030 145 -------------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVE 209 (337)
T ss_pred -------------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHH
Confidence 235556666664311 124688999988655 58899998 9999999999876 8
Q ss_pred HHHHHHHHHh
Q 003503 663 SRLQIFKACL 672 (815)
Q Consensus 663 ~r~~Il~~~l 672 (815)
+|.+|++...
T Consensus 210 er~eIL~~~~ 219 (337)
T TIGR02030 210 LRVEIVERRT 219 (337)
T ss_pred HHHHHHHhhh
Confidence 8999998754
No 267
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=4.5e-09 Score=112.18 Aligned_cols=100 Identities=28% Similarity=0.486 Sum_probs=75.8
Q ss_pred cceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchh-hhccCcc-HHHHHHHHHHHh----hCCCeEEEEecchhhhhc
Q 003503 523 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMWFGES-EANVREIFDKAR----QSAPCVLFFDELDSIATQ 596 (815)
Q Consensus 523 ~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~-~~~~g~s-e~~i~~~F~~a~----~~~p~ilfiDEid~l~~~ 596 (815)
.++||.||+|+|||.||+.||..++.||...++..|. ..|+|+. |.-|.++++.|. +....|+||||+|.+...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 4699999999999999999999999999999998875 4699987 556777877663 223469999999999854
Q ss_pred cCCCCCCCCchHHHHHHHHHhccccC
Q 003503 597 RGSSTGDAGGAADRVLNQLLTEMDGM 622 (815)
Q Consensus 597 r~~~~~~~~~~~~~vl~~lL~~ld~~ 622 (815)
-.+-.....-.+.-|.+.||..++|-
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGt 332 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGT 332 (564)
T ss_pred CccccccccccchhHHHHHHHHhccc
Confidence 32211111223456888999998874
No 268
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.03 E-value=1.5e-09 Score=109.16 Aligned_cols=143 Identities=24% Similarity=0.308 Sum_probs=97.1
Q ss_pred CCcceEEeCCCCCChhHHHHHHHHHhCCc------------------------EEEEeccchhhhccCccHHHHHHHHHH
Q 003503 521 PSKGVLFYGPPGCGKTLLAKAIANECQAN------------------------FISVKGPELLTMWFGESEANVREIFDK 576 (815)
Q Consensus 521 ~~~gilL~GppGtGKT~lakala~~~~~~------------------------~i~v~~~~l~~~~~g~se~~i~~~F~~ 576 (815)
.+..+||+||+|+|||++|+.++..+... +..+.... . .-....++.+.+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHHH
Confidence 34569999999999999999999886421 22221110 0 0123456666665
Q ss_pred Hhh----CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcc
Q 003503 577 ARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQ 652 (815)
Q Consensus 577 a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~ 652 (815)
+.. ....|+||||+|.+.. ...+.||..|+.. ....++|.+||.++.+.+++.+ |+ .
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~--------------~~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~i~s--r~-~ 148 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNE--------------AAANALLKTLEEP--PPNTLFILITPSPEKLLPTIRS--RC-Q 148 (188)
T ss_pred HccCcccCCeEEEEEechhhhCH--------------HHHHHHHHHhcCC--CCCeEEEEEECChHhChHHHHh--hc-E
Confidence 544 3457999999999832 2456788888763 3345566667777899999987 77 4
Q ss_pred eeeccCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCC
Q 003503 653 LIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHG 692 (815)
Q Consensus 653 ~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g 692 (815)
.+.|++|+.++..++++.. +++. ..+..+++.+.|
T Consensus 149 ~~~~~~~~~~~~~~~l~~~----gi~~-~~~~~i~~~~~g 183 (188)
T TIGR00678 149 VLPFPPLSEEALLQWLIRQ----GISE-EAAELLLALAGG 183 (188)
T ss_pred EeeCCCCCHHHHHHHHHHc----CCCH-HHHHHHHHHcCC
Confidence 8999999999998888876 3432 346666665554
No 269
>PRK08727 hypothetical protein; Validated
Probab=99.03 E-value=9.3e-09 Score=106.84 Aligned_cols=147 Identities=25% Similarity=0.375 Sum_probs=94.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCC
Q 003503 249 PKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKRE 325 (815)
Q Consensus 249 ~~~VLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~ 325 (815)
...++|+||+|||||+|+++++..+ +....+++..+.. ..+..+++.. ....+|+|||++.+.....
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~l--~~~dlLiIDDi~~l~~~~~ 110 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--------GRLRDALEAL--EGRSLVALDGLESIAGQRE 110 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--------hhHHHHHHHH--hcCCEEEEeCcccccCChH
Confidence 3569999999999999999997764 4455666644432 2223344433 3446999999998864421
Q ss_pred CchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCC---CHHhhccCCc--ceEEEcCCCCHHHHHHHHHHHhc--C
Q 003503 326 KTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI---DPALRRFGRF--DREIDIGVPDEVGRLEILRIHTK--N 398 (815)
Q Consensus 326 ~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~l---d~al~r~~rf--~~~i~i~~p~~~~R~~il~~~~~--~ 398 (815)
....+..+++....+..-+++.+...|..+ ++.+++ || ...+.++.|+.+++.++++.++. +
T Consensus 111 ---------~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~ 179 (233)
T PRK08727 111 ---------DEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRG 179 (233)
T ss_pred ---------HHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcC
Confidence 112344445444333333444455566655 688887 54 56789999999999999997654 3
Q ss_pred CccccchhhhHHHhhcCCC
Q 003503 399 MKLAEDVDLERVAKDTHGY 417 (815)
Q Consensus 399 ~~l~~~~~l~~la~~t~g~ 417 (815)
+.+. +..+..++....|-
T Consensus 180 l~l~-~e~~~~La~~~~rd 197 (233)
T PRK08727 180 LALD-EAAIDWLLTHGERE 197 (233)
T ss_pred CCCC-HHHHHHHHHhCCCC
Confidence 3333 34567777776643
No 270
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.03 E-value=1.5e-08 Score=119.14 Aligned_cols=166 Identities=26% Similarity=0.451 Sum_probs=105.6
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeE
Q 003503 208 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFF 277 (815)
Q Consensus 208 ~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l----------~~~~ 277 (815)
.+.+-+|+++.|.+..++.+.+.+.. ..+.+++|+|||||||||+|+++.+.. +.++
T Consensus 147 ~~rp~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~f 213 (615)
T TIGR02903 147 LLRPRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPF 213 (615)
T ss_pred hcCcCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCe
Confidence 45677899999999998887665532 224579999999999999999998765 2457
Q ss_pred EEEechhhhh-------hhhchhHH----HHHHHHHH----------HHhcCCcEEEecccccccCCCCCchhHHHHHHH
Q 003503 278 FLINGPEIMS-------KLAGESES----NLRKAFEE----------AEKNAPSIIFIDELDSIAPKREKTHGEVERRIV 336 (815)
Q Consensus 278 i~v~~~~l~~-------~~~g~~~~----~l~~vf~~----------a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~ 336 (815)
+.++|..+.. ...+.... ..+..+.. .......+||+||++.+-+. ..
T Consensus 214 v~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~-----------~Q 282 (615)
T TIGR02903 214 VEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL-----------LQ 282 (615)
T ss_pred EEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH-----------HH
Confidence 8898865410 11111100 00111110 01123469999999876422 22
Q ss_pred HHHHHhhhcc--------------------------cCCCcEEEEE-ecCCCCCCCHHhhccCCcceEEEcCCCCHHHHH
Q 003503 337 SQLLTLMDGL--------------------------KSRAHVIVMG-ATNRPNSIDPALRRFGRFDREIDIGVPDEVGRL 389 (815)
Q Consensus 337 ~~Ll~~ld~~--------------------------~~~~~vivi~-atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~ 389 (815)
..|+..++.- .....+++++ +++.+..+++++++ ||. .+.++.++.++..
T Consensus 283 ~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~ 359 (615)
T TIGR02903 283 NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIA 359 (615)
T ss_pred HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHH
Confidence 3343433221 0122355555 55678889999987 774 5788889999999
Q ss_pred HHHHHHhcCCc
Q 003503 390 EILRIHTKNMK 400 (815)
Q Consensus 390 ~il~~~~~~~~ 400 (815)
.|++..+....
T Consensus 360 ~Il~~~a~~~~ 370 (615)
T TIGR02903 360 LIVLNAAEKIN 370 (615)
T ss_pred HHHHHHHHHcC
Confidence 99998776543
No 271
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.02 E-value=1.3e-09 Score=116.18 Aligned_cols=138 Identities=14% Similarity=0.186 Sum_probs=95.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh--hhchhHHH----------HHHHHHHHHhcCCcEEEe
Q 003503 247 KPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSK--LAGESESN----------LRKAFEEAEKNAPSIIFI 314 (815)
Q Consensus 247 ~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~--~~g~~~~~----------l~~vf~~a~~~~p~il~i 314 (815)
..+++|||.||||||||++++.||..++.+++.|++...+.. ..|...-. ....+-.|. ..+.++++
T Consensus 62 ~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illl 140 (327)
T TIGR01650 62 AYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCF 140 (327)
T ss_pred hcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEe
Confidence 346789999999999999999999999999999988554332 22321100 011222232 34578999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhhhc------------ccCCCcEEEEEecCCCC------------CCCHHhhc
Q 003503 315 DELDSIAPKREKTHGEVERRIVSQLLTLMDG------------LKSRAHVIVMGATNRPN------------SIDPALRR 370 (815)
Q Consensus 315 DEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~------------~~~~~~vivi~atn~~~------------~ld~al~r 370 (815)
||++...+. +...|..+++. +..++.+.+|+|+|..+ .+++++..
T Consensus 141 DEin~a~p~-----------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD 209 (327)
T TIGR01650 141 DEYDAGRPD-----------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD 209 (327)
T ss_pred chhhccCHH-----------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh
Confidence 999987432 33444444431 22445788999999854 34777776
Q ss_pred cCCcceEEEcCCCCHHHHHHHHHHHhcC
Q 003503 371 FGRFDREIDIGVPDEVGRLEILRIHTKN 398 (815)
Q Consensus 371 ~~rf~~~i~i~~p~~~~R~~il~~~~~~ 398 (815)
||...+.+..|+.+.-.+|+......
T Consensus 210 --RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 210 --RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred --heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 89878889999999999998766433
No 272
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.02 E-value=2.4e-09 Score=120.36 Aligned_cols=110 Identities=20% Similarity=0.266 Sum_probs=71.6
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeE------EEEechhhhh-----------------------------
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF------FLINGPEIMS----------------------------- 287 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~------i~v~~~~l~~----------------------------- 287 (815)
+|.+.+++.+.|+|.+||||||++++|.+.+.... +..++.++.+
T Consensus 29 sf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~ 108 (539)
T COG1123 29 SFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVM 108 (539)
T ss_pred eEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchh
Confidence 44568899999999999999999999998875431 3333332211
Q ss_pred -----------------------------------------hhhch--hHHHHHHHHHHHHhcCCcEEEecccccccCCC
Q 003503 288 -----------------------------------------KLAGE--SESNLRKAFEEAEKNAPSIIFIDELDSIAPKR 324 (815)
Q Consensus 288 -----------------------------------------~~~g~--~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~ 324 (815)
.|+.+ ...+-|.++.-+....|.+|+.||-
T Consensus 109 tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEP------- 181 (539)
T COG1123 109 TIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEP------- 181 (539)
T ss_pred hHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCC-------
Confidence 01111 1223345555566677888888883
Q ss_pred CCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCC
Q 003503 325 EKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN 362 (815)
Q Consensus 325 ~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~ 362 (815)
....+..+..+++.++..+....++-++..|+++.
T Consensus 182 ---TTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~ 216 (539)
T COG1123 182 ---TTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG 216 (539)
T ss_pred ---ccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH
Confidence 33334456677777777777667777777777654
No 273
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.01 E-value=1.2e-08 Score=119.68 Aligned_cols=184 Identities=18% Similarity=0.250 Sum_probs=120.0
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEE----E--
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFL----I-- 280 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~----v-- 280 (815)
+++++..|+++.|++..++.|+.++... .-+..+||+||+|+|||++|+++|+.+...... -
T Consensus 8 ~kyRP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~C 75 (620)
T PRK14948 8 HKYRPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPC 75 (620)
T ss_pred HHhCCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCC
Confidence 4567889999999999999998887641 123579999999999999999999998642100 0
Q ss_pred -ech-----------hhh--hhhhchhHHHHHHHHHHHHh----cCCcEEEecccccccCCCCCchhHHHHHHHHHHHHh
Q 003503 281 -NGP-----------EIM--SKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTL 342 (815)
Q Consensus 281 -~~~-----------~l~--~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ 342 (815)
.|. ++. ..........++.++..+.. ....|+||||+|.+.. ...+.|+..
T Consensus 76 g~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~-----------~a~naLLK~ 144 (620)
T PRK14948 76 GKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST-----------AAFNALLKT 144 (620)
T ss_pred cccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH-----------HHHHHHHHH
Confidence 010 000 01112234567777766542 2346999999998742 245677777
Q ss_pred hhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhhHHHhhcCCCc
Q 003503 343 MDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYV 418 (815)
Q Consensus 343 ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~ 418 (815)
|+.. ...+++|++|++++.+.+.+++ |+ ..+++..+..++-...+.....+..+. ....+..++..+.|-.
T Consensus 145 LEeP--p~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~l 216 (620)
T PRK14948 145 LEEP--PPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGL 216 (620)
T ss_pred HhcC--CcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCH
Confidence 7743 3456667777788888888887 55 557888887777666665544433221 2234666777766643
No 274
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.01 E-value=1.7e-09 Score=119.40 Aligned_cols=121 Identities=25% Similarity=0.482 Sum_probs=77.9
Q ss_pred CcceEEeCCCCCChhHHHHHHHHHhCCc-------EEEEe----ccchhhhc----cCcc--HHHHHHHHHHHhhC--CC
Q 003503 522 SKGVLFYGPPGCGKTLLAKAIANECQAN-------FISVK----GPELLTMW----FGES--EANVREIFDKARQS--AP 582 (815)
Q Consensus 522 ~~gilL~GppGtGKT~lakala~~~~~~-------~i~v~----~~~l~~~~----~g~s--e~~i~~~F~~a~~~--~p 582 (815)
.++++|+||||||||++|+.+|..+... ++.+. ..+++..+ +|-. .....++.+.|... .|
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 4679999999999999999999887431 22332 12333222 1111 11233445666543 47
Q ss_pred eEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhcccc--------------------CCCCCcEEEEEecCCCC----
Q 003503 583 CVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDG--------------------MNAKKTVFIIGATNRPD---- 638 (815)
Q Consensus 583 ~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~--------------------~~~~~~v~vi~aTn~~~---- 638 (815)
+++|||||+..- ..++...+++.|+. +.-..++.||||+|..|
T Consensus 274 ~vliIDEINRan-------------i~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~ 340 (459)
T PRK11331 274 YVFIIDEINRAN-------------LSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLA 340 (459)
T ss_pred cEEEEehhhccC-------------HHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchh
Confidence 999999998843 23344444444441 22346899999999998
Q ss_pred CCCccccCCCCCcceeeccC
Q 003503 639 IIDPALLRPGRLDQLIYIPL 658 (815)
Q Consensus 639 ~ld~allr~gRf~~~i~~~~ 658 (815)
.+|.|++| ||. .|++.+
T Consensus 341 ~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 341 VVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred hccHHHHh--hhh-eEEecC
Confidence 79999999 995 455554
No 275
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=6.1e-09 Score=114.06 Aligned_cols=190 Identities=18% Similarity=0.175 Sum_probs=120.0
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCC-------cEEEE---
Q 003503 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISV--- 553 (815)
Q Consensus 484 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~-------~~i~v--- 553 (815)
+..++++.|.+++++.|...+.. + ..+..+||+||+|+|||++|+.+|..+.. +....
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~-----------g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYRE-----------G-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHc-----------C-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 45678899999999988876543 1 23456999999999999999999998743 11000
Q ss_pred -e-----------ccchh--h-hc-c--C-----ccHHHHHHHHHH----HhhCCCeEEEEecchhhhhccCCCCCCCCc
Q 003503 554 -K-----------GPELL--T-MW-F--G-----ESEANVREIFDK----ARQSAPCVLFFDELDSIATQRGSSTGDAGG 606 (815)
Q Consensus 554 -~-----------~~~l~--~-~~-~--g-----~se~~i~~~F~~----a~~~~p~ilfiDEid~l~~~r~~~~~~~~~ 606 (815)
. .+++. . .+ . | -+-..++.+-+. +......|++|||+|.+-
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~------------ 154 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN------------ 154 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC------------
Confidence 0 01111 0 00 0 0 011234443332 233456799999999983
Q ss_pred hHHHHHHHHHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCcccHHHH
Q 003503 607 AADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSAL 686 (815)
Q Consensus 607 ~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~l 686 (815)
....+.||..|+.. ..+.++|..|+.|+.+.|.+.+ |+ ..+.|++|+.++..++++......+++ +..+..+
T Consensus 155 --~~aanaLLk~LEEp--p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~~-~~~~~~i 226 (351)
T PRK09112 155 --RNAANAILKTLEEP--PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGSD-GEITEAL 226 (351)
T ss_pred --HHHHHHHHHHHhcC--CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCCC-HHHHHHH
Confidence 23457788888863 3345555556778888888876 88 599999999999999998743322222 2225566
Q ss_pred HHHcCCCCHHHHHHHHHHHH
Q 003503 687 ARYTHGFSGADITEVCQRAC 706 (815)
Q Consensus 687 a~~t~g~sg~di~~l~~~a~ 706 (815)
++.+.| +.....+++....
T Consensus 227 ~~~s~G-~pr~Al~ll~~~~ 245 (351)
T PRK09112 227 LQRSKG-SVRKALLLLNYGG 245 (351)
T ss_pred HHHcCC-CHHHHHHHHhcCc
Confidence 665554 5555555554443
No 276
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.00 E-value=7.5e-09 Score=117.35 Aligned_cols=170 Identities=15% Similarity=0.226 Sum_probs=107.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh-----CCeEEEEechhhhhhhhchhHHHHHHHHHHHH--hcCCcEEEecccccccC
Q 003503 250 KGILLYGPPGSGKTLIARAVANET-----GAFFFLINGPEIMSKLAGESESNLRKAFEEAE--KNAPSIIFIDELDSIAP 322 (815)
Q Consensus 250 ~~VLL~GppGtGKTtLar~la~~l-----~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~--~~~p~il~iDEid~l~~ 322 (815)
.+++|||++|+|||+|++++++.+ +..++++++.++............ ..++... -..+.+|+|||++++..
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~-~~~~~~~~~~~~~dvLiIDDiq~l~~ 220 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTH-KEIEQFKNEICQNDVLIIDDVQFLSY 220 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhh-hHHHHHHHHhccCCEEEEeccccccC
Confidence 469999999999999999999865 356788988887665443322110 1111111 23567999999998854
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCC---CCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCC
Q 003503 323 KREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN---SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNM 399 (815)
Q Consensus 323 ~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~---~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~ 399 (815)
+. .....|..+++.+......+|+.+...|. .+++.+++.......+.+..|+.++|..|++..++..
T Consensus 221 k~---------~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~ 291 (450)
T PRK14087 221 KE---------KTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQ 291 (450)
T ss_pred CH---------HHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhc
Confidence 32 22344555555554444545554444454 3467787722234677899999999999999887653
Q ss_pred cc---ccchhhhHHHhhcCCCcHHHHHHHHHHHH
Q 003503 400 KL---AEDVDLERVAKDTHGYVGSDLAALCTEAA 430 (815)
Q Consensus 400 ~l---~~~~~l~~la~~t~g~~~~dl~~l~~~a~ 430 (815)
.+ .++.-+..++....|- .+.+..++....
T Consensus 292 gl~~~l~~evl~~Ia~~~~gd-~R~L~gaL~~l~ 324 (450)
T PRK14087 292 NIKQEVTEEAINFISNYYSDD-VRKIKGSVSRLN 324 (450)
T ss_pred CCCCCCCHHHHHHHHHccCCC-HHHHHHHHHHHH
Confidence 32 2344567777777663 344455554443
No 277
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.99 E-value=1.5e-08 Score=117.94 Aligned_cols=194 Identities=19% Similarity=0.191 Sum_probs=127.1
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEe-----
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLIN----- 281 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~----- 281 (815)
.++.+-+|+++.|++..++.|..++..- ..+..+||+||+|+||||+|+++|+.+.......+
T Consensus 16 ~KyRP~~f~dliGq~~~v~~L~~~~~~g------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~ 83 (598)
T PRK09111 16 RKYRPQTFDDLIGQEAMVRTLTNAFETG------------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI 83 (598)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc
Confidence 4678889999999999999998877631 23567999999999999999999998864321111
Q ss_pred --------chhhhhh----------hhchhHHHHHHHHHHHHh----cCCcEEEecccccccCCCCCchhHHHHHHHHHH
Q 003503 282 --------GPEIMSK----------LAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQL 339 (815)
Q Consensus 282 --------~~~l~~~----------~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 339 (815)
|..+... .....-..++.++..+.. ....|+||||+|.+.. ...+.|
T Consensus 84 ~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~-----------~a~naL 152 (598)
T PRK09111 84 DLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST-----------AAFNAL 152 (598)
T ss_pred ccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH-----------HHHHHH
Confidence 1111110 001123456666665532 2346999999998842 234667
Q ss_pred HHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhhHHHhhcCCCc
Q 003503 340 LTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYV 418 (815)
Q Consensus 340 l~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~ 418 (815)
+..|+.... .+++|.+|+.++.+.+.+++ |+ ..+++..++..+....+...++...+. ++..+..++..+.|.
T Consensus 153 LKtLEePp~--~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gd- 226 (598)
T PRK09111 153 LKTLEEPPP--HVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGS- 226 (598)
T ss_pred HHHHHhCCC--CeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-
Confidence 777765433 45555567777778888876 55 568999999988888887766544332 223456667766664
Q ss_pred HHHHHHHHHHH
Q 003503 419 GSDLAALCTEA 429 (815)
Q Consensus 419 ~~dl~~l~~~a 429 (815)
..++..++..+
T Consensus 227 lr~al~~Ldkl 237 (598)
T PRK09111 227 VRDGLSLLDQA 237 (598)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 278
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=4.7e-09 Score=114.23 Aligned_cols=171 Identities=19% Similarity=0.277 Sum_probs=114.2
Q ss_pred cccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCC--------cEEEEecc
Q 003503 485 VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------NFISVKGP 556 (815)
Q Consensus 485 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~--------~~i~v~~~ 556 (815)
++|++|.|++.+++.|...+.. -..+..+||+||+|+|||++|+++|..+-. .++.+...
T Consensus 1 m~~~~i~g~~~~~~~l~~~~~~------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~ 68 (313)
T PRK05564 1 MSFHTIIGHENIKNRIKNSIIK------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI 68 (313)
T ss_pred CChhhccCcHHHHHHHHHHHHc------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc
Confidence 3689999999999988776532 133456899999999999999999997632 23333221
Q ss_pred chhhhccCccHHHHHHHHHHH----hhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEE
Q 003503 557 ELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIG 632 (815)
Q Consensus 557 ~l~~~~~g~se~~i~~~F~~a----~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~ 632 (815)
+ ++. -+-..|+++-+.+ ......|++||++|.+- ....|.||..|+. +..++++|.
T Consensus 69 ~--~~~--i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~--------------~~a~naLLK~LEe--pp~~t~~il 128 (313)
T PRK05564 69 N--KKS--IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT--------------EQAQNAFLKTIEE--PPKGVFIIL 128 (313)
T ss_pred c--CCC--CCHHHHHHHHHHHhcCcccCCceEEEEechhhcC--------------HHHHHHHHHHhcC--CCCCeEEEE
Confidence 0 000 1123466555533 33445799999998873 2346788888885 344555555
Q ss_pred ecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCC
Q 003503 633 ATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGF 693 (815)
Q Consensus 633 aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~ 693 (815)
+|+.++.+-|.+.+ |+ .+++|++|+.++....++..... ++ +..+..++..+.|-
T Consensus 129 ~~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~--~~-~~~~~~l~~~~~g~ 183 (313)
T PRK05564 129 LCENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND--IK-EEEKKSAIAFSDGI 183 (313)
T ss_pred EeCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC--CC-HHHHHHHHHHcCCC
Confidence 66778889898887 77 48999999999888877765432 22 22355566665553
No 279
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.98 E-value=1.8e-08 Score=117.38 Aligned_cols=185 Identities=16% Similarity=0.237 Sum_probs=118.2
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEE-------
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFL------- 279 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~------- 279 (815)
.++++.+|++|.|++..++.|+.++... .-+..+||+||+|+||||+|+.+|+.+......
T Consensus 8 ~kyRP~~f~eivGQe~i~~~L~~~i~~~------------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~ 75 (620)
T PRK14954 8 RKYRPSKFADITAQEHITHTIQNSLRMD------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQ 75 (620)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccc
Confidence 4678889999999999999998877531 234569999999999999999999998652100
Q ss_pred ---Ee------chhhhh-------hhhc---hhHHHHHHHHHHH----HhcCCcEEEecccccccCCCCCchhHHHHHHH
Q 003503 280 ---IN------GPEIMS-------KLAG---ESESNLRKAFEEA----EKNAPSIIFIDELDSIAPKREKTHGEVERRIV 336 (815)
Q Consensus 280 ---v~------~~~l~~-------~~~g---~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~ 336 (815)
-. |..+.. ...+ ..-..++.+.+.. ......+++|||+|.+.. ...
T Consensus 76 ~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~-----------~a~ 144 (620)
T PRK14954 76 EVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST-----------AAF 144 (620)
T ss_pred ccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH-----------HHH
Confidence 00 000100 0001 1123455554443 233456999999988742 124
Q ss_pred HHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcc-ccchhhhHHHhhcC
Q 003503 337 SQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AEDVDLERVAKDTH 415 (815)
Q Consensus 337 ~~Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l-~~~~~l~~la~~t~ 415 (815)
+.|+..++.... .+++|.+|+.+..+.+.+++ |. ..+++..++..+-...+...++...+ .++..+..++..+.
T Consensus 145 naLLK~LEePp~--~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~ 219 (620)
T PRK14954 145 NAFLKTLEEPPP--HAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQ 219 (620)
T ss_pred HHHHHHHhCCCC--CeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 567777765432 34555556677888888876 44 56889999888877777655543332 23345677777776
Q ss_pred CCcH
Q 003503 416 GYVG 419 (815)
Q Consensus 416 g~~~ 419 (815)
|..+
T Consensus 220 Gdlr 223 (620)
T PRK14954 220 GSMR 223 (620)
T ss_pred CCHH
Confidence 6433
No 280
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.97 E-value=1.6e-08 Score=100.51 Aligned_cols=169 Identities=23% Similarity=0.377 Sum_probs=119.2
Q ss_pred cccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhC---CcEEEEecc
Q 003503 480 VEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGP 556 (815)
Q Consensus 480 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~---~~~i~v~~~ 556 (815)
...+.+...+|.|++..|+.|.+.... |.. | .+..++||+|.-|||||+|+||+-++.. ..+|.|+-.
T Consensus 52 ~~~~~i~L~~l~Gvd~qk~~L~~NT~~-------F~~-G-~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~ 122 (287)
T COG2607 52 PDPDPIDLADLVGVDRQKEALVRNTEQ-------FAE-G-LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKE 122 (287)
T ss_pred CCCCCcCHHHHhCchHHHHHHHHHHHH-------HHc-C-CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHH
Confidence 345668899999999999988664332 221 2 3456799999999999999999998873 568888887
Q ss_pred chhhhccCccHHHHHHHHHHHhhCC-CeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCC--CCCcEEEEEe
Q 003503 557 ELLTMWFGESEANVREIFDKARQSA-PCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN--AKKTVFIIGA 633 (815)
Q Consensus 557 ~l~~~~~g~se~~i~~~F~~a~~~~-p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~--~~~~v~vi~a 633 (815)
++.. +-.+++..+... .-|||.|++-.= .+... ...|-..|||.- ...+|+|.+|
T Consensus 123 dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLSFe----------~gd~~---yK~LKs~LeG~ve~rP~NVl~YAT 180 (287)
T COG2607 123 DLAT---------LPDLVELLRARPEKFILFCDDLSFE----------EGDDA---YKALKSALEGGVEGRPANVLFYAT 180 (287)
T ss_pred HHhh---------HHHHHHHHhcCCceEEEEecCCCCC----------CCchH---HHHHHHHhcCCcccCCCeEEEEEe
Confidence 7743 334444443322 359999997441 11122 234444566653 3468999999
Q ss_pred cCCCCCCCc--------------------cccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCC
Q 003503 634 TNRPDIIDP--------------------ALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP 679 (815)
Q Consensus 634 Tn~~~~ld~--------------------allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~ 679 (815)
+||...|.. .+--..||...+-|++++.++..+|+..++++.+++-
T Consensus 181 SNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 181 SNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred cCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 998765531 1111249999999999999999999999999888764
No 281
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.97 E-value=1.2e-08 Score=114.61 Aligned_cols=177 Identities=16% Similarity=0.232 Sum_probs=113.4
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe----------
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 276 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~---------- 276 (815)
+++++.+|++|.|++..++.|+.++.. + ..+..+||+||+|+||||+|+++|+.+...
T Consensus 8 ~k~RP~~~~eiiGq~~~~~~L~~~~~~-----------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~ 75 (397)
T PRK14955 8 RKYRPKKFADITAQEHITRTIQNSLRM-----------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQ 75 (397)
T ss_pred HhcCCCcHhhccChHHHHHHHHHHHHh-----------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccc
Confidence 467888999999999999999887763 1 234569999999999999999999988542
Q ss_pred ----------------------EEEEechhhhhhhhchhHHHHHHHHHHHH----hcCCcEEEecccccccCCCCCchhH
Q 003503 277 ----------------------FFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGE 330 (815)
Q Consensus 277 ----------------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~ 330 (815)
++.+++.. ...-..++.+.+.+. .....++||||+|.+..
T Consensus 76 ~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~------~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~-------- 141 (397)
T PRK14955 76 EVTEPCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI-------- 141 (397)
T ss_pred cCCCCCCCCHHHHHHhcCCCCCeEeecccc------cCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH--------
Confidence 11111110 011234555544442 23345999999998742
Q ss_pred HHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcc-ccchhhhH
Q 003503 331 VERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AEDVDLER 409 (815)
Q Consensus 331 ~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l-~~~~~l~~ 409 (815)
...+.|+..++... ...++|.+++.+..+.+.+++ |. ..+++..++..+-...+...++...+ .++..+..
T Consensus 142 ---~~~~~LLk~LEep~--~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~ 213 (397)
T PRK14955 142 ---AAFNAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQL 213 (397)
T ss_pred ---HHHHHHHHHHhcCC--CCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 12345666665432 244555555667778778776 44 35788888887777777665543332 22334566
Q ss_pred HHhhcCCC
Q 003503 410 VAKDTHGY 417 (815)
Q Consensus 410 la~~t~g~ 417 (815)
++..+.|.
T Consensus 214 l~~~s~g~ 221 (397)
T PRK14955 214 IGRKAQGS 221 (397)
T ss_pred HHHHcCCC
Confidence 66666653
No 282
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=2.5e-08 Score=109.84 Aligned_cols=184 Identities=20% Similarity=0.203 Sum_probs=119.0
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcE-------------
Q 003503 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF------------- 550 (815)
Q Consensus 484 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~------------- 550 (815)
...+++|.|++++++.|.+.+.. + +.+..+||+||+|+||+++|.++|..+-..-
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~-----------~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRS-----------G-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 45788999999999999876553 1 3455799999999999999999998762100
Q ss_pred EEE-------------eccchhhhcc---Cc--------cHHHHHHHHHHH----hhCCCeEEEEecchhhhhccCCCCC
Q 003503 551 ISV-------------KGPELLTMWF---GE--------SEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSTG 602 (815)
Q Consensus 551 i~v-------------~~~~l~~~~~---g~--------se~~i~~~F~~a----~~~~p~ilfiDEid~l~~~r~~~~~ 602 (815)
+.+ +-+++.--.. +. .-..||.+-+.+ ....+.|++|||+|.+-
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~-------- 154 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN-------- 154 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC--------
Confidence 000 0111110000 00 123355555443 34567899999999872
Q ss_pred CCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCccc
Q 003503 603 DAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVD 682 (815)
Q Consensus 603 ~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~ 682 (815)
....+.||..++.. ..+.++|.+|+.++.+.+.+.+ |+ ..+.|++|+.++..+++...... ..+..
T Consensus 155 ------~~aanaLLK~LEep--p~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~~ 220 (365)
T PRK07471 155 ------ANAANALLKVLEEP--PARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD---LPDDP 220 (365)
T ss_pred ------HHHHHHHHHHHhcC--CCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc---CCHHH
Confidence 34567888888843 3456777788889888888876 77 48999999999998888875421 11222
Q ss_pred HHHHHHHcCCCCHHHHHHHH
Q 003503 683 LSALARYTHGFSGADITEVC 702 (815)
Q Consensus 683 ~~~la~~t~g~sg~di~~l~ 702 (815)
+..++..+.| |.....+++
T Consensus 221 ~~~l~~~s~G-sp~~Al~ll 239 (365)
T PRK07471 221 RAALAALAEG-SVGRALRLA 239 (365)
T ss_pred HHHHHHHcCC-CHHHHHHHh
Confidence 3456665554 444434444
No 283
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=2.4e-08 Score=109.82 Aligned_cols=200 Identities=22% Similarity=0.330 Sum_probs=126.3
Q ss_pred cccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-----EEEEechhhhhhh-
Q 003503 216 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-----FFLINGPEIMSKL- 289 (815)
Q Consensus 216 ~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~-----~i~v~~~~l~~~~- 289 (815)
.+.+-+.+++++...+.-.++. ..|.+++|||+||||||++++.+++++... +++|||....+.+
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~---------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRG---------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcC---------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence 3778889999887776532222 445679999999999999999999987433 7999995542211
Q ss_pred --------------hch-hHHHHHHHHHHHHh-cCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEE
Q 003503 290 --------------AGE-SESNLRKAFEEAEK-NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVI 353 (815)
Q Consensus 290 --------------~g~-~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vi 353 (815)
.|. ..+....+++.... ....|+++||+|.|....+ .++..|....... ..++.
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--------~~LY~L~r~~~~~--~~~v~ 158 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--------EVLYSLLRAPGEN--KVKVS 158 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--------hHHHHHHhhcccc--ceeEE
Confidence 111 12223344444333 3456889999999987653 3455555555444 56788
Q ss_pred EEEecCCCC---CCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCC---ccccchhhhHHH---hhcCCCcHHHHHH
Q 003503 354 VMGATNRPN---SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNM---KLAEDVDLERVA---KDTHGYVGSDLAA 424 (815)
Q Consensus 354 vi~atn~~~---~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~---~l~~~~~l~~la---~~t~g~~~~dl~~ 424 (815)
+|+.+|..+ .+++.+.+... ..+|.|++.+.++-..|+....+.. ....+.-+..++ ...+| ..+-...
T Consensus 159 vi~i~n~~~~~~~ld~rv~s~l~-~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~aid 236 (366)
T COG1474 159 IIAVSNDDKFLDYLDPRVKSSLG-PSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARKAID 236 (366)
T ss_pred EEEEeccHHHHHHhhhhhhhccC-cceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHHHHH
Confidence 899888764 66787776322 2458999999999999999765532 111222233333 33344 2223345
Q ss_pred HHHHHHHHhHHh
Q 003503 425 LCTEAALQCIRE 436 (815)
Q Consensus 425 l~~~a~~~~~~~ 436 (815)
+|+.|+..+-++
T Consensus 237 ilr~A~eiAe~~ 248 (366)
T COG1474 237 ILRRAGEIAERE 248 (366)
T ss_pred HHHHHHHHHHhh
Confidence 566666555443
No 284
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.96 E-value=3.6e-09 Score=125.24 Aligned_cols=155 Identities=23% Similarity=0.338 Sum_probs=101.7
Q ss_pred ccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHh-------------------
Q 003503 486 SWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC------------------- 546 (815)
Q Consensus 486 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~------------------- 546 (815)
.|.+|.|++.++..|.-....+ ...|+||.|++|||||++|++|+..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 4678999999887775443321 12469999999999999999999987
Q ss_pred ----------------CCcEEEEeccchhhhccCcc--HHHHH--------HHHHHHhhCCCeEEEEecchhhhhccCCC
Q 003503 547 ----------------QANFISVKGPELLTMWFGES--EANVR--------EIFDKARQSAPCVLFFDELDSIATQRGSS 600 (815)
Q Consensus 547 ----------------~~~~i~v~~~~l~~~~~g~s--e~~i~--------~~F~~a~~~~p~ilfiDEid~l~~~r~~~ 600 (815)
..+|+.+...-.....+|.. ++.+. .++..| .-.+||+|||+.+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l~------ 139 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLLD------ 139 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhCC------
Confidence 24566554432222233321 11110 011112 22499999999974
Q ss_pred CCCCCchHHHHHHHHHhccccCC-----------CCCcEEEEEecCCC-CCCCccccCCCCCcceeeccCCC-HHHHHHH
Q 003503 601 TGDAGGAADRVLNQLLTEMDGMN-----------AKKTVFIIGATNRP-DIIDPALLRPGRLDQLIYIPLPD-EASRLQI 667 (815)
Q Consensus 601 ~~~~~~~~~~vl~~lL~~ld~~~-----------~~~~v~vi~aTn~~-~~ld~allr~gRf~~~i~~~~p~-~~~r~~I 667 (815)
..+++.||..|+.-. ...+++||+|+|.. ..+.++|+. ||+.+|.++.+. .+++.+|
T Consensus 140 --------~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~i 209 (633)
T TIGR02442 140 --------DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEI 209 (633)
T ss_pred --------HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHH
Confidence 345667777665321 12358999999954 357889998 999999998774 5778888
Q ss_pred HHHHh
Q 003503 668 FKACL 672 (815)
Q Consensus 668 l~~~l 672 (815)
++..+
T Consensus 210 l~~~~ 214 (633)
T TIGR02442 210 IRRRL 214 (633)
T ss_pred HHHHH
Confidence 87654
No 285
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.96 E-value=1.9e-08 Score=118.14 Aligned_cols=186 Identities=19% Similarity=0.260 Sum_probs=119.7
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeE---------
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF--------- 277 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~--------- 277 (815)
+++.+.+|++|.|++..++.|+.++... ..+..+||+||+|+||||+++.+|+.+....
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~ 75 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCG 75 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 4678899999999999999998877531 2245689999999999999999999875321
Q ss_pred ----------------EEEechhhhhhhhchhHHHHHHHHHHHH----hcCCcEEEecccccccCCCCCchhHHHHHHHH
Q 003503 278 ----------------FLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVS 337 (815)
Q Consensus 278 ----------------i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~ 337 (815)
+.+++.. ...-..++.+.+... .....|+||||+|.+.. ...+
T Consensus 76 ~c~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~-----------~a~n 138 (585)
T PRK14950 76 TCEMCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST-----------AAFN 138 (585)
T ss_pred cCHHHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH-----------HHHH
Confidence 1122110 111233444444332 23346999999998742 2345
Q ss_pred HHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhhHHHhhcCC
Q 003503 338 QLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHG 416 (815)
Q Consensus 338 ~Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g 416 (815)
.|+..++... ..+++|.+++..+.+.+.+++ |+ ..+++..++..+...++........+. ++..+..++..+.|
T Consensus 139 aLLk~LEepp--~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G 213 (585)
T PRK14950 139 ALLKTLEEPP--PHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG 213 (585)
T ss_pred HHHHHHhcCC--CCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 6777776543 345555566777778777776 44 457888888888888777665544332 23346667766665
Q ss_pred CcHHHHHHHHH
Q 003503 417 YVGSDLAALCT 427 (815)
Q Consensus 417 ~~~~dl~~l~~ 427 (815)
+..++...+.
T Consensus 214 -dlr~al~~Le 223 (585)
T PRK14950 214 -SMRDAENLLQ 223 (585)
T ss_pred -CHHHHHHHHH
Confidence 3444443333
No 286
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=3.1e-09 Score=123.94 Aligned_cols=147 Identities=23% Similarity=0.384 Sum_probs=112.0
Q ss_pred CCCcceEEeCCCCCChhHHHHHHHHHh----------CCcEEEEeccchh--hhccCccHHHHHHHHHHHhhCCCeEEEE
Q 003503 520 SPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELL--TMWFGESEANVREIFDKARQSAPCVLFF 587 (815)
Q Consensus 520 ~~~~gilL~GppGtGKT~lakala~~~----------~~~~i~v~~~~l~--~~~~g~se~~i~~~F~~a~~~~p~ilfi 587 (815)
+..++-+|+|+||+|||.++..+|... +...+.++...+. .+|-|+.|..++.+.+...+..+.||||
T Consensus 189 R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFI 268 (786)
T COG0542 189 RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFI 268 (786)
T ss_pred cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEE
Confidence 445567899999999999999999875 3456777777776 5799999999999999999988999999
Q ss_pred ecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCC-----CCCccccCCCCCcceeeccCCCHH
Q 003503 588 DELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPD-----IIDPALLRPGRLDQLIYIPLPDEA 662 (815)
Q Consensus 588 DEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~-----~ld~allr~gRf~~~i~~~~p~~~ 662 (815)
|||+.+.+..+..++ .....+++.-.| ..+.+-+||||..-+ .-|+||-| ||. .|++..|+.+
T Consensus 269 DEiHtiVGAG~~~G~--a~DAaNiLKPaL-------ARGeL~~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e 336 (786)
T COG0542 269 DEIHTIVGAGATEGG--AMDAANLLKPAL-------ARGELRCIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVE 336 (786)
T ss_pred echhhhcCCCccccc--ccchhhhhHHHH-------hcCCeEEEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHH
Confidence 999999876543221 112223333333 255677888886433 35899999 996 8999999999
Q ss_pred HHHHHHHHHhccCCCC
Q 003503 663 SRLQIFKACLRKSPIS 678 (815)
Q Consensus 663 ~r~~Il~~~l~~~~~~ 678 (815)
+-..|++..-.++...
T Consensus 337 ~ti~ILrGlk~~yE~h 352 (786)
T COG0542 337 DTIAILRGLKERYEAH 352 (786)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999998776555433
No 287
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.95 E-value=1.4e-08 Score=108.11 Aligned_cols=190 Identities=19% Similarity=0.254 Sum_probs=114.3
Q ss_pred ceEEeCCCCCChhHHHHHHHHHhCC-cEEE--Eec-----cchhh---hccCcc-----H-HHHHHHH----HHHhhCCC
Q 003503 524 GVLFYGPPGCGKTLLAKAIANECQA-NFIS--VKG-----PELLT---MWFGES-----E-ANVREIF----DKARQSAP 582 (815)
Q Consensus 524 gilL~GppGtGKT~lakala~~~~~-~~i~--v~~-----~~l~~---~~~g~s-----e-~~i~~~F----~~a~~~~p 582 (815)
-++|+||+|+||||+++.++..+.. .+.. +.. .+++. ...|.. . ...+.+. .......+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 3889999999999999999998763 2221 111 11110 111211 1 1112222 22335567
Q ss_pred eEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCC---CCC-c---cccCCCCCcceee
Q 003503 583 CVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPD---IID-P---ALLRPGRLDQLIY 655 (815)
Q Consensus 583 ~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~---~ld-~---allr~gRf~~~i~ 655 (815)
.++++||++.+.. .....+..+..... .....+.|..+..|+ .+. + .+.+ |+...++
T Consensus 125 ~vliiDe~~~l~~-----------~~~~~l~~l~~~~~---~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~~ 188 (269)
T TIGR03015 125 ALLVVDEAQNLTP-----------ELLEELRMLSNFQT---DNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASCH 188 (269)
T ss_pred eEEEEECcccCCH-----------HHHHHHHHHhCccc---CCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeeee
Confidence 8999999998732 11223333322211 122222222233333 222 1 2333 7888899
Q ss_pred ccCCCHHHHHHHHHHHhccCCC-----CCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 003503 656 IPLPDEASRLQIFKACLRKSPI-----SPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIERERRKRENPEA 730 (815)
Q Consensus 656 ~~~p~~~~r~~Il~~~l~~~~~-----~~~~~~~~la~~t~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~ 730 (815)
+++.+.++..+++...++..+. -.+..+..|++.+.|... .|..+|..+...|..+.
T Consensus 189 l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~-~i~~l~~~~~~~a~~~~----------------- 250 (269)
T TIGR03015 189 LGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPR-LINILCDRLLLSAFLEE----------------- 250 (269)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCccc-HHHHHHHHHHHHHHHcC-----------------
Confidence 9999999999999988865432 123457778888888764 59999999988887643
Q ss_pred cccccccccccccHHHHHHHHhhcc
Q 003503 731 MEEDEVDDVAEIKAVHFEESMKYAR 755 (815)
Q Consensus 731 ~~~~~~~~~~~i~~~~f~~a~~~~~ 755 (815)
...|+.++++.++..+.
T Consensus 251 --------~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 251 --------KREIGGEEVREVIAEID 267 (269)
T ss_pred --------CCCCCHHHHHHHHHHhh
Confidence 23699999999987754
No 288
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.92 E-value=6.3e-09 Score=98.07 Aligned_cols=128 Identities=36% Similarity=0.505 Sum_probs=79.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCe---EEEEechhhhhh--------------hhchhHHHHHHHHHHHHhcCCcE
Q 003503 249 PKGILLYGPPGSGKTLIARAVANETGAF---FFLINGPEIMSK--------------LAGESESNLRKAFEEAEKNAPSI 311 (815)
Q Consensus 249 ~~~VLL~GppGtGKTtLar~la~~l~~~---~i~v~~~~l~~~--------------~~g~~~~~l~~vf~~a~~~~p~i 311 (815)
+.+++|+|||||||||+++.++..+... ++.+++...... .........+.+++.+....+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 5689999999999999999999998765 777776543221 11234556678888888877899
Q ss_pred EEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCC-CCCCCHHhhccCCcceEEEcCCC
Q 003503 312 IFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNR-PNSIDPALRRFGRFDREIDIGVP 383 (815)
Q Consensus 312 l~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~-~~~ld~al~r~~rf~~~i~i~~p 383 (815)
+++||++.+......... ...................+|+++|. ....+..+++ |++..+.+..+
T Consensus 82 iiiDei~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQEALL-----LLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHHHHH-----HhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 999999988654211100 00000000111122345677777775 3334444444 67777766543
No 289
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.91 E-value=7.6e-09 Score=121.27 Aligned_cols=54 Identities=28% Similarity=0.486 Sum_probs=44.4
Q ss_pred ccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCc
Q 003503 481 EVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN 549 (815)
Q Consensus 481 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~ 549 (815)
.+|..-|+++.|.+++++.+...+.. .++++|+||||||||+++++++..+...
T Consensus 11 ~~~~~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 11 PVPERLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred CcchhhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 45677899999999998877765542 2379999999999999999999998654
No 290
>PRK06620 hypothetical protein; Validated
Probab=98.91 E-value=2.1e-08 Score=102.52 Aligned_cols=135 Identities=14% Similarity=0.211 Sum_probs=87.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchh
Q 003503 250 KGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHG 329 (815)
Q Consensus 250 ~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~ 329 (815)
..++||||||||||+|++++++..+..++. .... . . .. ....++++||||+.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----~--~----~~-----~~~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----N--E----EI-----LEKYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----c--h----hH-----HhcCCEEEEeccccch--------
Confidence 679999999999999999999887653322 1110 0 0 11 1234689999999541
Q ss_pred HHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCC--CCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcc-ccchh
Q 003503 330 EVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNS--IDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AEDVD 406 (815)
Q Consensus 330 ~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~--ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l-~~~~~ 406 (815)
. ..|..+++.+...+..++++++..|.. + +++++.......+.+..|+.+.+..+++.......+ .++.-
T Consensus 99 ---~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev 171 (214)
T PRK06620 99 ---E---PALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQI 171 (214)
T ss_pred ---H---HHHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 0 234455555555566777777766654 4 778873233356899999999999999877653332 22334
Q ss_pred hhHHHhhcCCC
Q 003503 407 LERVAKDTHGY 417 (815)
Q Consensus 407 l~~la~~t~g~ 417 (815)
+..++....+-
T Consensus 172 ~~~L~~~~~~d 182 (214)
T PRK06620 172 IDFLLVNLPRE 182 (214)
T ss_pred HHHHHHHccCC
Confidence 66777766553
No 291
>PHA02244 ATPase-like protein
Probab=98.91 E-value=4.6e-08 Score=105.45 Aligned_cols=122 Identities=25% Similarity=0.361 Sum_probs=78.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhhhch--hHHHH--HHHHHHHHhcCCcEEEecccccccCC
Q 003503 248 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGE--SESNL--RKAFEEAEKNAPSIIFIDELDSIAPK 323 (815)
Q Consensus 248 ~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~--~~~~l--~~vf~~a~~~~p~il~iDEid~l~~~ 323 (815)
.+.+|||+||||||||+||+++|..++.+++.+++..-.....|. ....+ ..++... ....+++|||++.+.+.
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~--~~GgvLiLDEId~a~p~ 195 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF--KKGGLFFIDEIDASIPE 195 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh--hcCCEEEEeCcCcCCHH
Confidence 366899999999999999999999999999988852110000110 00011 1222222 24569999999987532
Q ss_pred CCCchhHHHHHHHHHHHHhhh---------cccCCCcEEEEEecCCC-----------CCCCHHhhccCCcceEEEcCCC
Q 003503 324 REKTHGEVERRIVSQLLTLMD---------GLKSRAHVIVMGATNRP-----------NSIDPALRRFGRFDREIDIGVP 383 (815)
Q Consensus 324 ~~~~~~~~~~~v~~~Ll~~ld---------~~~~~~~vivi~atn~~-----------~~ld~al~r~~rf~~~i~i~~p 383 (815)
+...|..+++ ....+.++.+|+|+|.+ ..++++++. ||. .+++..|
T Consensus 196 -----------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp 261 (383)
T PHA02244 196 -----------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYD 261 (383)
T ss_pred -----------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCC
Confidence 2333444443 12234678889999973 467888887 884 5889988
Q ss_pred CH
Q 003503 384 DE 385 (815)
Q Consensus 384 ~~ 385 (815)
..
T Consensus 262 ~~ 263 (383)
T PHA02244 262 EK 263 (383)
T ss_pred cH
Confidence 74
No 292
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.91 E-value=3.1e-08 Score=109.02 Aligned_cols=29 Identities=34% Similarity=0.544 Sum_probs=25.8
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHH
Q 003503 244 IGVKPPKGILLYGPPGSGKTLIARAVANE 272 (815)
Q Consensus 244 l~i~~~~~VLL~GppGtGKTtLar~la~~ 272 (815)
+.+.+++.+.|+||+||||||+++++++.
T Consensus 96 ~El~~g~rygLiG~nG~Gkst~L~~i~~~ 124 (614)
T KOG0927|consen 96 LELNRGRRYGLIGPNGSGKSTFLRAIAGR 124 (614)
T ss_pred EEecCCceEEEEcCCCCcHhHHHHHHhcC
Confidence 34577899999999999999999999875
No 293
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.90 E-value=8.7e-10 Score=109.65 Aligned_cols=142 Identities=28% Similarity=0.421 Sum_probs=64.7
Q ss_pred cccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCc----------EEEEec-
Q 003503 487 WEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN----------FISVKG- 555 (815)
Q Consensus 487 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~----------~i~v~~- 555 (815)
|.+|.|++..|+.|.-... | ..++||+||||||||++|+.+...+..- +.++.+
T Consensus 2 f~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred hhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 6789999999998854432 2 3579999999999999999999886311 010111
Q ss_pred ---------cchhhhccCccHHHH-H-------HHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhc
Q 003503 556 ---------PELLTMWFGESEANV-R-------EIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTE 618 (815)
Q Consensus 556 ---------~~l~~~~~g~se~~i-~-------~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ 618 (815)
.-+...-...++..+ . -.+..|.. .|||+||+-.+ .+++++.|+.-
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~---GVLflDE~~ef--------------~~~vld~Lr~p 129 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHR---GVLFLDELNEF--------------DRSVLDALRQP 129 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTT---SEEEECETTTS---------------HHHHHHHHHH
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcC---CEEEechhhhc--------------CHHHHHHHHHH
Confidence 000000000011100 0 01112222 49999998554 46788888888
Q ss_pred cccCC-----------CCCcEEEEEecCCC-----------------------CCCCccccCCCCCcceeeccCCCHH
Q 003503 619 MDGMN-----------AKKTVFIIGATNRP-----------------------DIIDPALLRPGRLDQLIYIPLPDEA 662 (815)
Q Consensus 619 ld~~~-----------~~~~v~vi~aTn~~-----------------------~~ld~allr~gRf~~~i~~~~p~~~ 662 (815)
|+.-. ..-++++|+|+|.= ..|...++. |||..+.++..+.+
T Consensus 130 le~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 130 LEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSYE 205 (206)
T ss_dssp HHHSBEEEEETTEEEEEB--EEEEEEE-S-------------------------------------------------
T ss_pred HHCCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--cccccccccccccC
Confidence 87532 11357899999831 225556666 88888888776654
No 294
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.89 E-value=4.3e-08 Score=107.48 Aligned_cols=156 Identities=22% Similarity=0.393 Sum_probs=106.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh-----CCeEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCcEEEecccccccCC
Q 003503 249 PKGILLYGPPGSGKTLIARAVANET-----GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPK 323 (815)
Q Consensus 249 ~~~VLL~GppGtGKTtLar~la~~l-----~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~ 323 (815)
-..++||||.|+|||+|++++++.. +..++.+...+++..........-..-|.+-. .-.+++||+++++..+
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 4569999999999999999999886 34577788777665554443333334455544 4569999999999866
Q ss_pred CCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCC---CHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcC--
Q 003503 324 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI---DPALRRFGRFDREIDIGVPDEVGRLEILRIHTKN-- 398 (815)
Q Consensus 324 ~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~l---d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~-- 398 (815)
.. ....+...++.+...++-+|+.+...|..+ .+.|++.......+.+.+|+.+.|..||+.....
T Consensus 191 ~~---------~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~ 261 (408)
T COG0593 191 ER---------TQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRG 261 (408)
T ss_pred hh---------HHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcC
Confidence 32 234556666666666666676666666654 5888873334567799999999999999986544
Q ss_pred CccccchhhhHHHhhcCC
Q 003503 399 MKLAEDVDLERVAKDTHG 416 (815)
Q Consensus 399 ~~l~~~~~l~~la~~t~g 416 (815)
+.+.++ -+..++.....
T Consensus 262 ~~i~~e-v~~~la~~~~~ 278 (408)
T COG0593 262 IEIPDE-VLEFLAKRLDR 278 (408)
T ss_pred CCCCHH-HHHHHHHHhhc
Confidence 344333 34556555443
No 295
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.89 E-value=1e-07 Score=94.94 Aligned_cols=168 Identities=23% Similarity=0.314 Sum_probs=118.4
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechh
Q 003503 208 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPE 284 (815)
Q Consensus 208 ~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~ 284 (815)
.++.+.+.+|.|++.+++.+.+-... |- .-.|..+|||+|..|||||+|++++-++. +...+.|+-.+
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~-------F~--~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d 123 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQ-------FA--EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED 123 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHH-------HH--cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH
Confidence 35678889999999999988544332 11 11467889999999999999999998886 45678888776
Q ss_pred hhhhhhchhHHHHHHHHHHHHh-cCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcc-cC-CCcEEEEEecCCC
Q 003503 285 IMSKLAGESESNLRKAFEEAEK-NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGL-KS-RAHVIVMGATNRP 361 (815)
Q Consensus 285 l~~~~~g~~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~-~~-~~~vivi~atn~~ 361 (815)
+.. +-.++...+. ...-|||+|++.+=. + ......|...|+|- .. ..+|++.+|+|+.
T Consensus 124 l~~---------Lp~l~~~Lr~~~~kFIlFcDDLSFe~-------g---d~~yK~LKs~LeG~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 124 LAT---------LPDLVELLRARPEKFILFCDDLSFEE-------G---DDAYKALKSALEGGVEGRPANVLFYATSNRR 184 (287)
T ss_pred Hhh---------HHHHHHHHhcCCceEEEEecCCCCCC-------C---chHHHHHHHHhcCCcccCCCeEEEEEecCCc
Confidence 642 2334444332 345699999976521 1 12345666777653 33 3578888999987
Q ss_pred CCCCHH--------------------hhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcccc
Q 003503 362 NSIDPA--------------------LRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAE 403 (815)
Q Consensus 362 ~~ld~a--------------------l~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~ 403 (815)
+.++.. +--..||...+.+.+++.++.+.|+..+.+...+..
T Consensus 185 HLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 185 HLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred ccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 655421 122368999999999999999999999888777654
No 296
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.89 E-value=1.1e-08 Score=115.25 Aligned_cols=195 Identities=22% Similarity=0.272 Sum_probs=133.2
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeE--------EE
Q 003503 208 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF--------FL 279 (815)
Q Consensus 208 ~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~--------i~ 279 (815)
++++-.|+++.|.+...+.|+..+..- .-....|+.||.|+||||+||.+|+.++..- ..
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C 76 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKC 76 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhh
Confidence 567889999999999999999888752 1234689999999999999999999886532 01
Q ss_pred Eechhhhh----------hhhchhHHHHHHHHHHHH----hcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhc
Q 003503 280 INGPEIMS----------KLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDG 345 (815)
Q Consensus 280 v~~~~l~~----------~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~ 345 (815)
..|..+.. ......-..+|.+.+.+. ....-|++|||+|.|.. ...+.|+..++.
T Consensus 77 ~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~-----------~afNALLKTLEE 145 (515)
T COG2812 77 ISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK-----------QAFNALLKTLEE 145 (515)
T ss_pred hhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhH-----------HHHHHHhccccc
Confidence 11112211 111223445677766653 34456999999998852 345666666653
Q ss_pred ccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccch-hhhHHHhhcCCCcHHHHHH
Q 003503 346 LKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDV-DLERVAKDTHGYVGSDLAA 424 (815)
Q Consensus 346 ~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~-~l~~la~~t~g~~~~dl~~ 424 (815)
....|++|.+|..++.+++.+.+ |+ +.+.+...+.+.-...|...+....+..+. -+..+++..+| +.+|...
T Consensus 146 --PP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDals 219 (515)
T COG2812 146 --PPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALS 219 (515)
T ss_pred --CccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHH
Confidence 34578889999999999999887 54 346777777877777777776665554443 35556655555 5567777
Q ss_pred HHHHHHH
Q 003503 425 LCTEAAL 431 (815)
Q Consensus 425 l~~~a~~ 431 (815)
++..+..
T Consensus 220 lLDq~i~ 226 (515)
T COG2812 220 LLDQAIA 226 (515)
T ss_pred HHHHHHH
Confidence 7766643
No 297
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.88 E-value=6.6e-09 Score=112.53 Aligned_cols=159 Identities=24% Similarity=0.422 Sum_probs=98.9
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCC-ceEEEECCCCCcHHHHHHHHHHHhCCe---------EEE
Q 003503 210 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPP-KGILLYGPPGSGKTLIARAVANETGAF---------FFL 279 (815)
Q Consensus 210 ~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~-~~VLL~GppGtGKTtLar~la~~l~~~---------~i~ 279 (815)
.+..|++|.|+++.+..+.-..- .++ .++||.|+||+||||++|++++.++.. +..
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~--------------~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~ 68 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAI--------------DPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSAR 68 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHh--------------ccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCc
Confidence 35678999999998887643221 123 579999999999999999999998421 111
Q ss_pred Eec-hhh--------hhh---------------hhch--hHHHH---HHHHHHHH--hcCCcEEEecccccccCCCCCch
Q 003503 280 ING-PEI--------MSK---------------LAGE--SESNL---RKAFEEAE--KNAPSIIFIDELDSIAPKREKTH 328 (815)
Q Consensus 280 v~~-~~l--------~~~---------------~~g~--~~~~l---~~vf~~a~--~~~p~il~iDEid~l~~~~~~~~ 328 (815)
+.+ ++. ... ..|. ....+ +.+|+... .....+||+||++.+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~------- 141 (334)
T PRK13407 69 PEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE------- 141 (334)
T ss_pred ccCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC-------
Confidence 110 000 000 0010 00000 00111110 0112589999999874
Q ss_pred hHHHHHHHHHHHHhhhccc-----------CCCcEEEEEecCCCC-CCCHHhhccCCcceEEEcCCCCH-HHHHHHHHHH
Q 003503 329 GEVERRIVSQLLTLMDGLK-----------SRAHVIVMGATNRPN-SIDPALRRFGRFDREIDIGVPDE-VGRLEILRIH 395 (815)
Q Consensus 329 ~~~~~~v~~~Ll~~ld~~~-----------~~~~vivi~atn~~~-~ld~al~r~~rf~~~i~i~~p~~-~~R~~il~~~ 395 (815)
..+...|+..|+.-. ...++++++++|..+ .+++++.. ||...+.++.|.. ++|.+++...
T Consensus 142 ----~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 142 ----DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred ----HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHh
Confidence 335566777775321 234688888888755 57888877 8998999988876 8889998754
No 298
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.88 E-value=1.4e-09 Score=103.54 Aligned_cols=109 Identities=26% Similarity=0.410 Sum_probs=68.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh------hhhhc---hhHHHHHHHHHHHHhcCCcEEEeccccccc
Q 003503 251 GILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM------SKLAG---ESESNLRKAFEEAEKNAPSIIFIDELDSIA 321 (815)
Q Consensus 251 ~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~------~~~~g---~~~~~l~~vf~~a~~~~p~il~iDEid~l~ 321 (815)
+|+|+||||||||+|++.+|..++.+++.+++.... +.+.- .....-..+.+.. ..+.++||||++...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~--~~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM--RKGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH--HEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc--cceeEEEECCcccCC
Confidence 589999999999999999999999999888875432 11110 0000000000011 156799999998753
Q ss_pred CCCCCchhHHHHHHHHHHHHhhhccc-----------CCC------cEEEEEecCCCC----CCCHHhhccCCc
Q 003503 322 PKREKTHGEVERRIVSQLLTLMDGLK-----------SRA------HVIVMGATNRPN----SIDPALRRFGRF 374 (815)
Q Consensus 322 ~~~~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~------~vivi~atn~~~----~ld~al~r~~rf 374 (815)
..+...|+.+++.-. ... ++.+|+|+|+.. .+++++++ ||
T Consensus 79 -----------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 -----------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred -----------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 335555666665311 111 389999999988 88999987 65
No 299
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.87 E-value=1e-08 Score=112.27 Aligned_cols=125 Identities=30% Similarity=0.423 Sum_probs=90.2
Q ss_pred ceEEeCCCCCChhHHHHHHHHHhC------------------------CcEEEEeccchhhhccCccHHHHHHHHHHHhh
Q 003503 524 GVLFYGPPGCGKTLLAKAIANECQ------------------------ANFISVKGPELLTMWFGESEANVREIFDKARQ 579 (815)
Q Consensus 524 gilL~GppGtGKT~lakala~~~~------------------------~~~i~v~~~~l~~~~~g~se~~i~~~F~~a~~ 579 (815)
.+||+||||+|||++|.++|+.+. ..++.++.++....- -....++.+-+....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~ 103 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSE 103 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHHHhcc
Confidence 599999999999999999999986 467888887754321 123345544443322
Q ss_pred ----CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceee
Q 003503 580 ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIY 655 (815)
Q Consensus 580 ----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~ 655 (815)
....|+++||+|.+.. ...+.++..|+. +..+..+|.+||.++.+-+-+.+ |+ ..+.
T Consensus 104 ~~~~~~~kviiidead~mt~--------------~A~nallk~lEe--p~~~~~~il~~n~~~~il~tI~S--Rc-~~i~ 164 (325)
T COG0470 104 SPLEGGYKVVIIDEADKLTE--------------DAANALLKTLEE--PPKNTRFILITNDPSKILPTIRS--RC-QRIR 164 (325)
T ss_pred CCCCCCceEEEeCcHHHHhH--------------HHHHHHHHHhcc--CCCCeEEEEEcCChhhccchhhh--cc-eeee
Confidence 3467999999999843 355778887774 45577888899999998887776 77 4788
Q ss_pred ccCCCHHHHHHHHH
Q 003503 656 IPLPDEASRLQIFK 669 (815)
Q Consensus 656 ~~~p~~~~r~~Il~ 669 (815)
|++|+...+....+
T Consensus 165 f~~~~~~~~i~~~e 178 (325)
T COG0470 165 FKPPSRLEAIAWLE 178 (325)
T ss_pred cCCchHHHHHHHhh
Confidence 88866655544444
No 300
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=9e-09 Score=111.19 Aligned_cols=183 Identities=17% Similarity=0.249 Sum_probs=121.4
Q ss_pred ccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCc----------EEEEec
Q 003503 486 SWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN----------FISVKG 555 (815)
Q Consensus 486 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~----------~i~v~~ 555 (815)
.|++|.|++.+++.|...+... +.+..+||+||+|+||+++|.++|..+-.. +...+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 5889999999999998876531 334579999999999999999999885211 111222
Q ss_pred cchhhhc-----cCc--------------------cHHHHHHHHHHHh----hCCCeEEEEecchhhhhccCCCCCCCCc
Q 003503 556 PELLTMW-----FGE--------------------SEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSTGDAGG 606 (815)
Q Consensus 556 ~~l~~~~-----~g~--------------------se~~i~~~F~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~ 606 (815)
||+.-.+ -|. .-..++++-+.+. .....|++||++|.+.
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~------------ 137 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN------------ 137 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC------------
Confidence 3322000 011 0124566655543 3446899999999973
Q ss_pred hHHHHHHHHHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCcccHHHH
Q 003503 607 AADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSAL 686 (815)
Q Consensus 607 ~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~l 686 (815)
....|.||..|+... +. ++|..|+.++.|-|.+.+ |+ ..+.|++|+.++..++++......... .+...+
T Consensus 138 --~~aaNaLLK~LEEPp--~~-~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~~~--~~~~~l 207 (314)
T PRK07399 138 --EAAANALLKTLEEPG--NG-TLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEILN--INFPEL 207 (314)
T ss_pred --HHHHHHHHHHHhCCC--CC-eEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccccch--hHHHHH
Confidence 235678888888654 33 456667788999999987 87 589999999999999988764322211 224667
Q ss_pred HHHcCCCCHHHHHHHHH
Q 003503 687 ARYTHGFSGADITEVCQ 703 (815)
Q Consensus 687 a~~t~g~sg~di~~l~~ 703 (815)
+....| +.....++++
T Consensus 208 ~~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 208 LALAQG-SPGAAIANIE 223 (314)
T ss_pred HHHcCC-CHHHHHHHHH
Confidence 776665 4444444444
No 301
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=2.4e-08 Score=108.49 Aligned_cols=148 Identities=20% Similarity=0.283 Sum_probs=101.0
Q ss_pred CCcceEEeCCCCCChhHHHHHHHHHhCC------------------------cEEEEeccchhhhccCccHHHHHHHHHH
Q 003503 521 PSKGVLFYGPPGCGKTLLAKAIANECQA------------------------NFISVKGPELLTMWFGESEANVREIFDK 576 (815)
Q Consensus 521 ~~~gilL~GppGtGKT~lakala~~~~~------------------------~~i~v~~~~l~~~~~g~se~~i~~~F~~ 576 (815)
.+..+||+||+|+|||++|+++|..+.. .++.+...+- ++. -+-..||++-+.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~~--i~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DKT--IKVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CCC--CCHHHHHHHHHH
Confidence 3556999999999999999999988642 1222322100 000 123456665554
Q ss_pred Hh----hCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcc
Q 003503 577 AR----QSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQ 652 (815)
Q Consensus 577 a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~ 652 (815)
+. .....|++||++|.+- ....|.||..|+. +..++++|.+|+.++.|.|.+++ |+.
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~--------------~~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc~- 158 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMN--------------RNAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RCQ- 158 (328)
T ss_pred HhhccccCCCeEEEECChhhCC--------------HHHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hce-
Confidence 43 3456799999999983 3456889998885 34577888999999999999998 886
Q ss_pred eeeccCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCC
Q 003503 653 LIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGF 693 (815)
Q Consensus 653 ~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~ 693 (815)
.+.|++|+.++..+.+...... ..+.+...++....|-
T Consensus 159 ~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~Gs 196 (328)
T PRK05707 159 QQACPLPSNEESLQWLQQALPE---SDERERIELLTLAGGS 196 (328)
T ss_pred eeeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCCC
Confidence 5999999999888888765421 1223344555555553
No 302
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.84 E-value=2.7e-08 Score=109.07 Aligned_cols=130 Identities=29% Similarity=0.418 Sum_probs=88.7
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh--hhchhHHHH------------HHHHHHHHhcCCcEE
Q 003503 247 KPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSK--LAGESESNL------------RKAFEEAEKNAPSII 312 (815)
Q Consensus 247 ~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~--~~g~~~~~l------------~~vf~~a~~~~p~il 312 (815)
..+.++||.||||||||+|++.+|..++.+++.++|..-+.. ..|...-.. +-+|.... +++
T Consensus 41 ~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~il 116 (329)
T COG0714 41 LAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VIL 116 (329)
T ss_pred HcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEE
Confidence 347899999999999999999999999999999998533221 111111110 11111111 499
Q ss_pred EecccccccCCCCCchhHHHHHHHHHHHHhhhc----------ccCCCcEEEEEecC-----CCCCCCHHhhccCCcceE
Q 003503 313 FIDELDSIAPKREKTHGEVERRIVSQLLTLMDG----------LKSRAHVIVMGATN-----RPNSIDPALRRFGRFDRE 377 (815)
Q Consensus 313 ~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~----------~~~~~~vivi~atn-----~~~~ld~al~r~~rf~~~ 377 (815)
++|||+...+ .+.+.|+..|+. +.-...+++++|+| ....+++++.+ ||...
T Consensus 117 l~DEInra~p-----------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~ 183 (329)
T COG0714 117 LLDEINRAPP-----------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLR 183 (329)
T ss_pred EEeccccCCH-----------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEE
Confidence 9999997653 356777777765 33446788888889 44567889987 88888
Q ss_pred EEcCCCCHH-HHHHHHH
Q 003503 378 IDIGVPDEV-GRLEILR 393 (815)
Q Consensus 378 i~i~~p~~~-~R~~il~ 393 (815)
+.++.|+.+ +...++.
T Consensus 184 ~~v~yp~~~~e~~~i~~ 200 (329)
T COG0714 184 IYVDYPDSEEEERIILA 200 (329)
T ss_pred EecCCCCchHHHHHHHH
Confidence 899999444 4444443
No 303
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.84 E-value=1e-07 Score=111.94 Aligned_cols=176 Identities=19% Similarity=0.278 Sum_probs=119.3
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe----------
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 276 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~---------- 276 (815)
.++++.+|++|.|++..++.|+..+... ..+..+|||||+|+|||++|+++|+.+...
T Consensus 9 ~kyRP~~f~~viGq~~~~~~L~~~i~~~------------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg 76 (614)
T PRK14971 9 RKYRPSTFESVVGQEALTTTLKNAIATN------------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACN 76 (614)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 4678899999999999999998887631 224569999999999999999999987521
Q ss_pred ---------------EEEEechhhhhhhhchhHHHHHHHHHHHHh----cCCcEEEecccccccCCCCCchhHHHHHHHH
Q 003503 277 ---------------FFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVS 337 (815)
Q Consensus 277 ---------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~ 337 (815)
++.+++.. ......++.+...+.. ...-+++|||++.+.. ...+
T Consensus 77 ~C~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~-----------~a~n 139 (614)
T PRK14971 77 ECESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ-----------AAFN 139 (614)
T ss_pred cchHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-----------HHHH
Confidence 22222211 1113446666655432 2345999999998842 2356
Q ss_pred HHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcccc-chhhhHHHhhcCC
Q 003503 338 QLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAE-DVDLERVAKDTHG 416 (815)
Q Consensus 338 ~Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~-~~~l~~la~~t~g 416 (815)
.|+..|+.... ..++|.+|+....+-+.+++ |+ ..+++..++..+-...+...+....+.- ...+..++..+.|
T Consensus 140 aLLK~LEepp~--~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g 214 (614)
T PRK14971 140 AFLKTLEEPPS--YAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG 214 (614)
T ss_pred HHHHHHhCCCC--CeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 77777775433 45555566677888888887 54 4588999988888777776655444432 2346677776655
No 304
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.84 E-value=7.1e-09 Score=123.36 Aligned_cols=32 Identities=25% Similarity=0.435 Sum_probs=28.2
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l~ 274 (815)
++.+.++..+.|+||+|||||||+++|++.+.
T Consensus 21 s~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~ 52 (638)
T PRK10636 21 TATINPGQKVGLVGKNGCGKSTLLALLKNEIS 52 (638)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45678899999999999999999999999753
No 305
>PRK04132 replication factor C small subunit; Provisional
Probab=98.84 E-value=4e-08 Score=117.22 Aligned_cols=156 Identities=17% Similarity=0.194 Sum_probs=113.2
Q ss_pred eEEeC--CCCCChhHHHHHHHHHh-----CCcEEEEeccchhhhccCccHHHHHHHHHHHhhC------CCeEEEEecch
Q 003503 525 VLFYG--PPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQS------APCVLFFDELD 591 (815)
Q Consensus 525 ilL~G--ppGtGKT~lakala~~~-----~~~~i~v~~~~l~~~~~g~se~~i~~~F~~a~~~------~p~ilfiDEid 591 (815)
-+..| |++.||||+|+++|+++ +.+++.+++++..+ -..++.+.+.+... ...|+||||+|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 45567 99999999999999997 56799999987532 23556555443322 23699999999
Q ss_pred hhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHH
Q 003503 592 SIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKAC 671 (815)
Q Consensus 592 ~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~ 671 (815)
.+-. ...+.|+..|+.. ..++.+|++||.++.+-+++.+ |+ ..+.|++|+.++....++..
T Consensus 641 ~Lt~--------------~AQnALLk~lEep--~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 641 ALTQ--------------DAQQALRRTMEMF--SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred cCCH--------------HHHHHHHHHhhCC--CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 9832 2467788888853 4577888999999999999987 87 58899999999988888888
Q ss_pred hccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHH
Q 003503 672 LRKSPIS-PDVDLSALARYTHGFSGADITEVCQRAC 706 (815)
Q Consensus 672 l~~~~~~-~~~~~~~la~~t~g~sg~di~~l~~~a~ 706 (815)
+++.++. ++..+..++..+.| +.+...++++.++
T Consensus 702 ~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~ 736 (846)
T PRK04132 702 AENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 736 (846)
T ss_pred HHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 7765543 33457777776665 3344444444433
No 306
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.82 E-value=7.3e-08 Score=109.24 Aligned_cols=194 Identities=22% Similarity=0.302 Sum_probs=120.5
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHc---ccCC--------------hhhHh----hhCCCCCceEEEECCCCCcHHHHH
Q 003503 208 RLNEVGYDDVGGVRKQMAQIRELVEL---PLRH--------------PQLFK----SIGVKPPKGILLYGPPGSGKTLIA 266 (815)
Q Consensus 208 ~~~~~~~~~i~G~~~~~~~i~~~v~~---~l~~--------------~~~~~----~l~i~~~~~VLL~GppGtGKTtLa 266 (815)
++.+-.|.|+-|-+..-..+..++.+ ...+ .+++. ..+-++.+-+||+||||-||||||
T Consensus 264 ky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLA 343 (877)
T KOG1969|consen 264 KYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLA 343 (877)
T ss_pred ccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHH
Confidence 45556677888777776666555542 0011 11221 112234456899999999999999
Q ss_pred HHHHHHhCCeEEEEechhhhhhhhchhHHHHHHHHHHH----HhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHh
Q 003503 267 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTL 342 (815)
Q Consensus 267 r~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ 342 (815)
+.+|...|..++.||+++-.+. ....+++..+.+.- ..+.|..|++||||-.. +..+..++.+
T Consensus 344 HViAkqaGYsVvEINASDeRt~--~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~-----------~~~Vdvilsl 410 (877)
T KOG1969|consen 344 HVIAKQAGYSVVEINASDERTA--PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP-----------RAAVDVILSL 410 (877)
T ss_pred HHHHHhcCceEEEecccccccH--HHHHHHHHHHHhhccccccCCCcceEEEecccCCc-----------HHHHHHHHHH
Confidence 9999999999999999775322 12233333333321 12679999999998543 2334444444
Q ss_pred hhc-------ccC---------C---CcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcccc
Q 003503 343 MDG-------LKS---------R---AHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAE 403 (815)
Q Consensus 343 ld~-------~~~---------~---~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~ 403 (815)
+.. -.. + -.--||+.||+. .-|+|+-..-|...+.|..|......+-|+..+.+..+..
T Consensus 411 v~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~ 488 (877)
T KOG1969|consen 411 VKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMRA 488 (877)
T ss_pred HHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCCC
Confidence 431 000 0 112356677765 4688877666888899999998888888887776655543
Q ss_pred c-hhhhHHHhhcCC
Q 003503 404 D-VDLERVAKDTHG 416 (815)
Q Consensus 404 ~-~~l~~la~~t~g 416 (815)
+ ..+..+++.+++
T Consensus 489 d~~aL~~L~el~~~ 502 (877)
T KOG1969|consen 489 DSKALNALCELTQN 502 (877)
T ss_pred CHHHHHHHHHHhcc
Confidence 2 235555555554
No 307
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.80 E-value=1.3e-07 Score=99.28 Aligned_cols=182 Identities=18% Similarity=0.268 Sum_probs=109.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhC---------CeEEEEechh------hhhh--------h--hchhHHHHHHHHHH
Q 003503 249 PKGILLYGPPGSGKTLIARAVANETG---------AFFFLINGPE------IMSK--------L--AGESESNLRKAFEE 303 (815)
Q Consensus 249 ~~~VLL~GppGtGKTtLar~la~~l~---------~~~i~v~~~~------l~~~--------~--~g~~~~~l~~vf~~ 303 (815)
..++||+|++|.|||++++.++...+ .+++.+..+. ++.. + ..........+..-
T Consensus 61 mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~l 140 (302)
T PF05621_consen 61 MPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRL 140 (302)
T ss_pred CCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHH
Confidence 46799999999999999999987653 2455555421 1110 0 01122333445556
Q ss_pred HHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCC--CHHhhccCCcceEEEcC
Q 003503 304 AEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI--DPALRRFGRFDREIDIG 381 (815)
Q Consensus 304 a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~l--d~al~r~~rf~~~i~i~ 381 (815)
.....+.+|+|||++.++... ....+.+.+.|..+.+.+ +-.++.+|+......+ |+.+.+ ||... .++
T Consensus 141 lr~~~vrmLIIDE~H~lLaGs----~~~qr~~Ln~LK~L~NeL--~ipiV~vGt~~A~~al~~D~QLa~--RF~~~-~Lp 211 (302)
T PF05621_consen 141 LRRLGVRMLIIDEFHNLLAGS----YRKQREFLNALKFLGNEL--QIPIVGVGTREAYRALRTDPQLAS--RFEPF-ELP 211 (302)
T ss_pred HHHcCCcEEEeechHHHhccc----HHHHHHHHHHHHHHhhcc--CCCeEEeccHHHHHHhccCHHHHh--ccCCc-cCC
Confidence 666778899999999986432 122344444444443332 2356666665433333 677776 88543 333
Q ss_pred C-CCHHHHHHHHHHHhcCCccccc------hhhhHHHhhcCCCcHHHHHHHHHHHHHHhHHhhccc
Q 003503 382 V-PDEVGRLEILRIHTKNMKLAED------VDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDV 440 (815)
Q Consensus 382 ~-p~~~~R~~il~~~~~~~~l~~~------~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~ 440 (815)
. ...++...++..+...+++... .-...+...+.|..| ++..++..|+..+++...+.
T Consensus 212 ~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~sG~E~ 276 (302)
T PF05621_consen 212 RWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELSRLLNAAAIAAIRSGEER 276 (302)
T ss_pred CCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhcCCce
Confidence 3 2334445566666666655432 223566777888776 67888889999888766443
No 308
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.80 E-value=3.7e-07 Score=109.60 Aligned_cols=134 Identities=18% Similarity=0.272 Sum_probs=83.9
Q ss_pred ceEEeCCCCCChhHHHHHHHHHhCCcEEEEecc------chhhhccCccHHHH---HHHHHHHhhCCCeEEEEecchhhh
Q 003503 524 GVLFYGPPGCGKTLLAKAIANECQANFISVKGP------ELLTMWFGESEANV---REIFDKARQSAPCVLFFDELDSIA 594 (815)
Q Consensus 524 gilL~GppGtGKT~lakala~~~~~~~i~v~~~------~l~~~~~g~se~~i---~~~F~~a~~~~p~ilfiDEid~l~ 594 (815)
.+|+-||+-+|||.+.+.+|.+.+..|+.|+.- +.++.|+......+ ..+.-.|-+.. --|++||+.--.
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNLAp 968 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNLAP 968 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccccCc
Confidence 499999999999999999999999999999864 44555654332211 11222333332 378899985421
Q ss_pred hccCCCCCCCCchHHHHHHHHHhcccc---------CCCCCcEEEEEecCCCCC------CCccccCCCCCcceeeccCC
Q 003503 595 TQRGSSTGDAGGAADRVLNQLLTEMDG---------MNAKKTVFIIGATNRPDI------IDPALLRPGRLDQLIYIPLP 659 (815)
Q Consensus 595 ~~r~~~~~~~~~~~~~vl~~lL~~ld~---------~~~~~~v~vi~aTn~~~~------ld~allr~gRf~~~i~~~~p 659 (815)
...-+++|.||..=.. +.+...+.++||-|.|-. |..|+.. ||-. ++|..-
T Consensus 969 -----------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RFlE-~hFddi 1034 (4600)
T COG5271 969 -----------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RFLE-MHFDDI 1034 (4600)
T ss_pred -----------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hhHh-hhcccC
Confidence 1233455555432111 123456778888898854 6778877 8854 455544
Q ss_pred CHHHHHHHHHHHh
Q 003503 660 DEASRLQIFKACL 672 (815)
Q Consensus 660 ~~~~r~~Il~~~l 672 (815)
-+.+...|++..+
T Consensus 1035 pedEle~ILh~rc 1047 (4600)
T COG5271 1035 PEDELEEILHGRC 1047 (4600)
T ss_pred cHHHHHHHHhccC
Confidence 4556667776544
No 309
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.80 E-value=7.3e-08 Score=106.69 Aligned_cols=122 Identities=26% Similarity=0.444 Sum_probs=74.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCe-------EEEEec----hhhhhhh-hchh-----HHHHHHHHHHHHh--cC
Q 003503 248 PPKGILLYGPPGSGKTLIARAVANETGAF-------FFLING----PEIMSKL-AGES-----ESNLRKAFEEAEK--NA 308 (815)
Q Consensus 248 ~~~~VLL~GppGtGKTtLar~la~~l~~~-------~i~v~~----~~l~~~~-~g~~-----~~~l~~vf~~a~~--~~ 308 (815)
.+++++|+||||||||++|+.+|..+... .+.++. .+++..+ .+.. ...+..+++.|.. ..
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~ 272 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEK 272 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccC
Confidence 36789999999999999999999887431 122221 2222211 1100 1123334455544 35
Q ss_pred CcEEEecccccccCCCCCchhHHHHHHHHHHHHhhh--------------------cccCCCcEEEEEecCCCC----CC
Q 003503 309 PSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMD--------------------GLKSRAHVIVMGATNRPN----SI 364 (815)
Q Consensus 309 p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld--------------------~~~~~~~vivi~atn~~~----~l 364 (815)
|.++|||||+..-..+ +...++.+|+ .+....++.+|||+|..+ .+
T Consensus 273 ~~vliIDEINRani~k----------iFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~l 342 (459)
T PRK11331 273 KYVFIIDEINRANLSK----------VFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVV 342 (459)
T ss_pred CcEEEEehhhccCHHH----------hhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhc
Confidence 7899999998764322 1122222222 234456899999999887 78
Q ss_pred CHHhhccCCcceEEEcCC
Q 003503 365 DPALRRFGRFDREIDIGV 382 (815)
Q Consensus 365 d~al~r~~rf~~~i~i~~ 382 (815)
|.|++| ||.. +++.+
T Consensus 343 D~AlrR--RF~f-i~i~p 357 (459)
T PRK11331 343 DYALRR--RFSF-IDIEP 357 (459)
T ss_pred cHHHHh--hhhe-EEecC
Confidence 999999 7743 44543
No 310
>PRK09087 hypothetical protein; Validated
Probab=98.79 E-value=7.9e-08 Score=99.16 Aligned_cols=140 Identities=22% Similarity=0.300 Sum_probs=90.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCch
Q 003503 249 PKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTH 328 (815)
Q Consensus 249 ~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~ 328 (815)
...++|+||+|||||+|+++++...+.. +++..++.. .++..... .++++||++.+...
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~-----------~~~~~~~~---~~l~iDDi~~~~~~----- 102 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGS-----------DAANAAAE---GPVLIEDIDAGGFD----- 102 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcch-----------HHHHhhhc---CeEEEECCCCCCCC-----
Confidence 3459999999999999999999876654 333322211 11111111 38899999976311
Q ss_pred hHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCC---CHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCcc-ccc
Q 003503 329 GEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI---DPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AED 404 (815)
Q Consensus 329 ~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~l---d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l-~~~ 404 (815)
...|..+++.+......++++++..|..+ .+.+++.......+++..|+.+.|.++++..++...+ .++
T Consensus 103 -------~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ 175 (226)
T PRK09087 103 -------ETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDP 175 (226)
T ss_pred -------HHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 12355666655555666777766655433 5778873334578899999999999999988765433 233
Q ss_pred hhhhHHHhhcCC
Q 003503 405 VDLERVAKDTHG 416 (815)
Q Consensus 405 ~~l~~la~~t~g 416 (815)
..+..++....+
T Consensus 176 ev~~~La~~~~r 187 (226)
T PRK09087 176 HVVYYLVSRMER 187 (226)
T ss_pred HHHHHHHHHhhh
Confidence 446777776664
No 311
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.79 E-value=1.2e-07 Score=107.32 Aligned_cols=205 Identities=20% Similarity=0.288 Sum_probs=137.4
Q ss_pred ceEEeCCCCCChhHHHHHHHHHh----------CCcEEEEeccchhh----------hccCccH------HHHHHHHHHH
Q 003503 524 GVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELLT----------MWFGESE------ANVREIFDKA 577 (815)
Q Consensus 524 gilL~GppGtGKT~lakala~~~----------~~~~i~v~~~~l~~----------~~~g~se------~~i~~~F~~a 577 (815)
.+.+.|-||||||.++..+..++ .+.++.|++-.+.+ .+.|+.. ..+..-|..+
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 48899999999999999988865 35688888866643 2334331 2233344322
Q ss_pred -hhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCCCCccccC--CCCCc-ce
Q 003503 578 -RQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLR--PGRLD-QL 653 (815)
Q Consensus 578 -~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr--~gRf~-~~ 653 (815)
....++|+++||.|.|+... ..|+..|+..-. ....+++||+..|..+....-|.. ..|++ .+
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~-----------QdVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tR 570 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRS-----------QDVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTR 570 (767)
T ss_pred CCCCCCEEEEeccHHHHhccc-----------HHHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhhhcccee
Confidence 23457999999999998542 345555554422 245689999999988765443331 13665 67
Q ss_pred eeccCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 003503 654 IYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGA--DITEVCQRACKYAIRENIEKDIERERRKRENPEAM 731 (815)
Q Consensus 654 i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~--di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~ 731 (815)
|.|.+++.++..+|+...+.....-.+--.+.+|+.-...||. --..+|++|+..|-.+....
T Consensus 571 i~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~--------------- 635 (767)
T KOG1514|consen 571 ICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKG--------------- 635 (767)
T ss_pred eecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccc---------------
Confidence 8999999999999999999876333333345556655556663 44568999998887766411
Q ss_pred ccccccccccccHHHHHHHHhhccCCCC
Q 003503 732 EEDEVDDVAEIKAVHFEESMKYARRSVS 759 (815)
Q Consensus 732 ~~~~~~~~~~i~~~~f~~a~~~~~~svs 759 (815)
..+....++..|+.+|+.++..+.-
T Consensus 636 ---k~~~~q~v~~~~v~~Ai~em~~~~~ 660 (767)
T KOG1514|consen 636 ---KLAVSQLVGILHVMEAINEMLASPY 660 (767)
T ss_pred ---cccccceeehHHHHHHHHHHhhhhH
Confidence 0122346888999999988755443
No 312
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.78 E-value=2.5e-08 Score=98.13 Aligned_cols=112 Identities=24% Similarity=0.351 Sum_probs=73.3
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCC----eEEEEechhhhhhhhchhHHHHHHHHHH----HHhcCCcEEEeccccc
Q 003503 248 PPKGILLYGPPGSGKTLIARAVANETGA----FFFLINGPEIMSKLAGESESNLRKAFEE----AEKNAPSIIFIDELDS 319 (815)
Q Consensus 248 ~~~~VLL~GppGtGKTtLar~la~~l~~----~~i~v~~~~l~~~~~g~~~~~l~~vf~~----a~~~~p~il~iDEid~ 319 (815)
|...+||+||+|||||.+|++||..+.. +++.+++.++.... +....+...+.. .......|||+||||.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~--~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGD--DVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHH--HCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccc--hHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 4567999999999999999999999985 89999998775511 111111111111 1111123999999999
Q ss_pred ccCCCCCchhHHHHHHHHHHHHhhhccc---------CCCcEEEEEecCCC
Q 003503 320 IAPKREKTHGEVERRIVSQLLTLMDGLK---------SRAHVIVMGATNRP 361 (815)
Q Consensus 320 l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~~~~vivi~atn~~ 361 (815)
+.+......+.....+.+.|+.++++-. .-.++++|+|+|--
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 9886433344445577788888886422 12467888888754
No 313
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.78 E-value=2.5e-07 Score=101.38 Aligned_cols=183 Identities=16% Similarity=0.189 Sum_probs=115.3
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-------EEEE-
Q 003503 209 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-------FFLI- 280 (815)
Q Consensus 209 ~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~-------~i~v- 280 (815)
+.+..++++.|+++.++.+...+... .-+..+||+||+|+||||+|+.+|+.+... ....
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~g------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~ 84 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREG------------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD 84 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcC------------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC
Confidence 34667888999999999998887641 224569999999999999999999987441 1000
Q ss_pred ---ech---hh--------h--hhh--h-------chhHHHHHHHHHHH----HhcCCcEEEecccccccCCCCCchhHH
Q 003503 281 ---NGP---EI--------M--SKL--A-------GESESNLRKAFEEA----EKNAPSIIFIDELDSIAPKREKTHGEV 331 (815)
Q Consensus 281 ---~~~---~l--------~--~~~--~-------g~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~~ 331 (815)
.|. .+ . ... . .-.-..++.+.+.. ..+...|++|||+|.+..
T Consensus 85 ~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~--------- 155 (351)
T PRK09112 85 PDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR--------- 155 (351)
T ss_pred CCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH---------
Confidence 110 01 0 000 0 00123344443332 233456999999998842
Q ss_pred HHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhhHHH
Q 003503 332 ERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVA 411 (815)
Q Consensus 332 ~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la 411 (815)
...+.|+..++.... +.++|..++.++.+.+.+++ |+ ..+.+++|+.++-..+|........+ ++..+..++
T Consensus 156 --~aanaLLk~LEEpp~--~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~-~~~~~~~i~ 227 (351)
T PRK09112 156 --NAANAILKTLEEPPA--RALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGS-DGEITEALL 227 (351)
T ss_pred --HHHHHHHHHHhcCCC--CceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCC-CHHHHHHHH
Confidence 234668888876433 34445556778888899987 66 58999999999999888764322221 122345566
Q ss_pred hhcCCCcHH
Q 003503 412 KDTHGYVGS 420 (815)
Q Consensus 412 ~~t~g~~~~ 420 (815)
..+.|-...
T Consensus 228 ~~s~G~pr~ 236 (351)
T PRK09112 228 QRSKGSVRK 236 (351)
T ss_pred HHcCCCHHH
Confidence 666655443
No 314
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.77 E-value=3.4e-08 Score=110.11 Aligned_cols=131 Identities=20% Similarity=0.311 Sum_probs=79.8
Q ss_pred CCcceEEeCCCCCChhHHHHHHHHHhCC--cEEEEe-----ccchhhhccCcc-HHHH--HHHHHHHhhC---CCeEEEE
Q 003503 521 PSKGVLFYGPPGCGKTLLAKAIANECQA--NFISVK-----GPELLTMWFGES-EANV--REIFDKARQS---APCVLFF 587 (815)
Q Consensus 521 ~~~gilL~GppGtGKT~lakala~~~~~--~~i~v~-----~~~l~~~~~g~s-e~~i--~~~F~~a~~~---~p~ilfi 587 (815)
...++||+||||||||++|++++..++. +|..+. .++++ |.. -... ..-|...... ...++|+
T Consensus 38 ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLf----G~l~i~~~~~~g~f~r~~~G~L~~A~lLfL 113 (498)
T PRK13531 38 SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVF----GPLSIQALKDEGRYQRLTSGYLPEAEIVFL 113 (498)
T ss_pred cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhc----CcHHHhhhhhcCchhhhcCCccccccEEee
Confidence 3456999999999999999999998753 333322 22332 211 1111 1123222111 2349999
Q ss_pred ecchhhhhccCCCCCCCCchHHHHHHHHHhccccCC--------CCCcEEEEEecCCCC---CCCccccCCCCCcceeec
Q 003503 588 DELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN--------AKKTVFIIGATNRPD---IIDPALLRPGRLDQLIYI 656 (815)
Q Consensus 588 DEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~--------~~~~v~vi~aTn~~~---~ld~allr~gRf~~~i~~ 656 (815)
|||..+ ...+.+.||..|+.-. .....++++|||... ...+|++- ||-..+.+
T Consensus 114 DEI~ra--------------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~v 177 (498)
T PRK13531 114 DEIWKA--------------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWL 177 (498)
T ss_pred cccccC--------------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEEC
Confidence 999754 2457788888874211 112235556667432 23458887 99889999
Q ss_pred cCCC-HHHHHHHHHHH
Q 003503 657 PLPD-EASRLQIFKAC 671 (815)
Q Consensus 657 ~~p~-~~~r~~Il~~~ 671 (815)
|+|+ .++-.+|+...
T Consensus 178 p~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 178 DKVQDKANFRSMLTSQ 193 (498)
T ss_pred CCCCchHHHHHHHHcc
Confidence 9997 45557787764
No 315
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=2.3e-08 Score=109.28 Aligned_cols=149 Identities=21% Similarity=0.223 Sum_probs=102.3
Q ss_pred ccccccc-cchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCC----------------
Q 003503 486 SWEDIGG-LDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA---------------- 548 (815)
Q Consensus 486 ~~~~i~g-~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~---------------- 548 (815)
.|+.|.| ++.+.+.|...+.. -..+..+||+||+|+|||++|+++|..+-.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4777777 88888888776542 134556899999999999999999988532
Q ss_pred --------cEEEEeccchhhhccCccHHHHHHHHHHHh----hCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHH
Q 003503 549 --------NFISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLL 616 (815)
Q Consensus 549 --------~~i~v~~~~l~~~~~g~se~~i~~~F~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL 616 (815)
.+..+... +.. -.-..++++-+.+. .....|++|||+|.+- ....|.||
T Consensus 71 ~~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~--------------~~a~NaLL 131 (329)
T PRK08058 71 RIDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT--------------ASAANSLL 131 (329)
T ss_pred HHhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC--------------HHHHHHHH
Confidence 12222111 000 11234555554433 2345799999998873 33568899
Q ss_pred hccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHH
Q 003503 617 TEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKA 670 (815)
Q Consensus 617 ~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~ 670 (815)
..|+. +.+.+++|.+|+.++.|-|.+.+ |+ ..++|++|+.++..++++.
T Consensus 132 K~LEE--Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 132 KFLEE--PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHhcC--CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 99985 34566666788788889999887 77 4899999999887777754
No 316
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.75 E-value=5e-08 Score=112.86 Aligned_cols=132 Identities=20% Similarity=0.230 Sum_probs=82.7
Q ss_pred CcceEEeCCCCCChhHHHHHHHHHhCCc-EEEEecc---chhh-----hccCccHHHHHHHHHHHhhCCCeEEEEecchh
Q 003503 522 SKGVLFYGPPGCGKTLLAKAIANECQAN-FISVKGP---ELLT-----MWFGESEANVREIFDKARQSAPCVLFFDELDS 592 (815)
Q Consensus 522 ~~gilL~GppGtGKT~lakala~~~~~~-~i~v~~~---~l~~-----~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~ 592 (815)
..++||+|+||||||++|++++..+... |+...++ .+.. ...|+..-.-+ .+..|. ..++++||++.
T Consensus 236 ~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G-~l~~A~---~Gil~iDEi~~ 311 (509)
T smart00350 236 DINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGG-ALVLAD---NGVCCIDEFDK 311 (509)
T ss_pred cceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCc-cEEecC---CCEEEEechhh
Confidence 3469999999999999999999987543 3321111 1211 00111000000 111222 24999999999
Q ss_pred hhhccCCCCCCCCchHHHHHHHHHhccccCC-----------CCCcEEEEEecCCCC-------------CCCccccCCC
Q 003503 593 IATQRGSSTGDAGGAADRVLNQLLTEMDGMN-----------AKKTVFIIGATNRPD-------------IIDPALLRPG 648 (815)
Q Consensus 593 l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----------~~~~v~vi~aTn~~~-------------~ld~allr~g 648 (815)
+-. .....|+..|+.-. -..++.||||+|..+ .|++++++
T Consensus 312 l~~--------------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs-- 375 (509)
T smart00350 312 MDD--------------SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS-- 375 (509)
T ss_pred CCH--------------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--
Confidence 742 23344555454211 124678999999753 58899998
Q ss_pred CCcceee-ccCCCHHHHHHHHHHHhc
Q 003503 649 RLDQLIY-IPLPDEASRLQIFKACLR 673 (815)
Q Consensus 649 Rf~~~i~-~~~p~~~~r~~Il~~~l~ 673 (815)
|||.++. .+.|+.+...+|.+..+.
T Consensus 376 RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 376 RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 9998664 478999999999988653
No 317
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.75 E-value=5.5e-07 Score=95.99 Aligned_cols=68 Identities=21% Similarity=0.267 Sum_probs=47.0
Q ss_pred CCCcceEEeCCCCCChhHHHHHHHHHhCC-cEEEEeccchhhhccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhc
Q 003503 520 SPSKGVLFYGPPGCGKTLLAKAIANECQA-NFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 596 (815)
Q Consensus 520 ~~~~gilL~GppGtGKT~lakala~~~~~-~~i~v~~~~l~~~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~ 596 (815)
.....+-++|.+||||||+.+++...+.. .-|.+.+.++.+ .+.+.++-+-. .--++|=|-..+|.++
T Consensus 311 ~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~----~~~~~mrplR~-----~mQvVFQDPygSLsPR 379 (534)
T COG4172 311 RRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDG----LSRKEMRPLRR-----RMQVVFQDPYGSLSPR 379 (534)
T ss_pred cCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccc----cChhhhhhhhh-----hceEEEeCCCCCCCcc
Confidence 33444999999999999999999998753 567777777643 34444433222 2248898988887543
No 318
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.73 E-value=2e-08 Score=119.83 Aligned_cols=32 Identities=19% Similarity=0.383 Sum_probs=28.1
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l~ 274 (815)
++.+.++..+.|+||+|||||||+++|++...
T Consensus 23 s~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~ 54 (635)
T PRK11147 23 ELHIEDNERVCLVGRNGAGKSTLMKILNGEVL 54 (635)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 34567889999999999999999999999763
No 319
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.73 E-value=1e-07 Score=103.52 Aligned_cols=157 Identities=21% Similarity=0.298 Sum_probs=95.4
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEe-----------
Q 003503 213 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLIN----------- 281 (815)
Q Consensus 213 ~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~----------- 281 (815)
.|..|.|+++.+..+.-.+-- ....+++|.|+||+|||||+|++++.+...-..+.
T Consensus 2 pf~~ivgq~~~~~al~~~~~~-------------~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVID-------------PKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcC-------------CCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 477899999988776332211 12467999999999999999999988743111111
Q ss_pred -----chhh----------------hhhhhchhHHH------HHHH-------HHHH--HhcCCcEEEecccccccCCCC
Q 003503 282 -----GPEI----------------MSKLAGESESN------LRKA-------FEEA--EKNAPSIIFIDELDSIAPKRE 325 (815)
Q Consensus 282 -----~~~l----------------~~~~~g~~~~~------l~~v-------f~~a--~~~~p~il~iDEid~l~~~~~ 325 (815)
|... .....+.++.. +... |+.. ......+||+||++.+.+
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~--- 145 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLED--- 145 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCH---
Confidence 1100 00000000110 1111 1110 011236999999998742
Q ss_pred CchhHHHHHHHHHHHHhhhccc-----------CCCcEEEEEecCCCC-CCCHHhhccCCcceEEEcCCCCH-HHHHHHH
Q 003503 326 KTHGEVERRIVSQLLTLMDGLK-----------SRAHVIVMGATNRPN-SIDPALRRFGRFDREIDIGVPDE-VGRLEIL 392 (815)
Q Consensus 326 ~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~vivi~atn~~~-~ld~al~r~~rf~~~i~i~~p~~-~~R~~il 392 (815)
.+...|+..|+.-. ...++++++++|..+ .+.+++.. ||...+.++.|.. ++|.+|+
T Consensus 146 --------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eIL 215 (337)
T TIGR02030 146 --------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEIV 215 (337)
T ss_pred --------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHHH
Confidence 34566666664311 124678888887655 68888887 8998999999876 8888998
Q ss_pred HHH
Q 003503 393 RIH 395 (815)
Q Consensus 393 ~~~ 395 (815)
+..
T Consensus 216 ~~~ 218 (337)
T TIGR02030 216 ERR 218 (337)
T ss_pred Hhh
Confidence 753
No 320
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.73 E-value=3.8e-08 Score=114.44 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=28.2
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l~ 274 (815)
++.+.++..+.|.||+|+|||||+++|++.+.
T Consensus 25 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (506)
T PRK13549 25 SLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP 56 (506)
T ss_pred eEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34567889999999999999999999999865
No 321
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.72 E-value=4.4e-08 Score=104.48 Aligned_cols=66 Identities=33% Similarity=0.540 Sum_probs=44.4
Q ss_pred cccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhC--CcEEEEeccchhh
Q 003503 487 WEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLT 560 (815)
Q Consensus 487 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~--~~~i~v~~~~l~~ 560 (815)
-+.++|+.+.++..--.+.. . +-+.-..+++||.||||||||.||-++|.+++ .||+.++++++.+
T Consensus 23 ~~GlVGQ~~AReAagiiv~m-------I-k~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS 90 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDM-------I-KEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYS 90 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHH-------H-HTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-B
T ss_pred cccccChHHHHHHHHHHHHH-------H-hcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeee
Confidence 34677888777765433221 1 11334467899999999999999999999997 6899999988864
No 322
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.72 E-value=5e-09 Score=95.67 Aligned_cols=104 Identities=30% Similarity=0.430 Sum_probs=59.3
Q ss_pred ceEEeCCCCCChhHHHHHHHHHhCCcEEEEec-cchh-----hhccCc-cHH----HHHHHHHHHhhCCCeEEEEecchh
Q 003503 524 GVLFYGPPGCGKTLLAKAIANECQANFISVKG-PELL-----TMWFGE-SEA----NVREIFDKARQSAPCVLFFDELDS 592 (815)
Q Consensus 524 gilL~GppGtGKT~lakala~~~~~~~i~v~~-~~l~-----~~~~g~-se~----~i~~~F~~a~~~~p~ilfiDEid~ 592 (815)
++||.|+||+|||++|+++|..++..|..|.. ++++ +..+-. ... .-.-+| ..|+++|||.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 48999999999999999999999999988865 3443 211111 000 112233 24999999977
Q ss_pred hhhccCCCCCCCCchHHHHHHHHHhccccC---------CCCCcEEEEEecCCCC-----CCCccccCCCCC
Q 003503 593 IATQRGSSTGDAGGAADRVLNQLLTEMDGM---------NAKKTVFIIGATNRPD-----IIDPALLRPGRL 650 (815)
Q Consensus 593 l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~---------~~~~~v~vi~aTn~~~-----~ld~allr~gRf 650 (815)
. ..++.+.||..|..- .-.+.++||||-|..+ .|.+|++. ||
T Consensus 74 a--------------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 74 A--------------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp S---------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred C--------------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 4 355677788777642 1235689999999876 47778886 77
No 323
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.72 E-value=9e-08 Score=103.94 Aligned_cols=160 Identities=22% Similarity=0.353 Sum_probs=99.8
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-------EE-EEe
Q 003503 210 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-------FF-LIN 281 (815)
Q Consensus 210 ~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~-------~i-~v~ 281 (815)
....|++|.|+++.+..|.-....| ...+|||.|++||||||++|++++.+... |. .-+
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 3558999999999888775444321 23579999999999999999998876421 10 000
Q ss_pred chh-----hhhhh-------------------hchhHHH------HHHHHHHHH---------hcCCcEEEecccccccC
Q 003503 282 GPE-----IMSKL-------------------AGESESN------LRKAFEEAE---------KNAPSIIFIDELDSIAP 322 (815)
Q Consensus 282 ~~~-----l~~~~-------------------~g~~~~~------l~~vf~~a~---------~~~p~il~iDEid~l~~ 322 (815)
.++ ..+.. .+.++.. +...|.... .....+||+||++.+.+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~ 158 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD 158 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH
Confidence 000 00000 0111111 111121111 11236999999998853
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcc-----------cCCCcEEEEEecCCCC-CCCHHhhccCCcceEEEcCCCC-HHHHH
Q 003503 323 KREKTHGEVERRIVSQLLTLMDGL-----------KSRAHVIVMGATNRPN-SIDPALRRFGRFDREIDIGVPD-EVGRL 389 (815)
Q Consensus 323 ~~~~~~~~~~~~v~~~Ll~~ld~~-----------~~~~~vivi~atn~~~-~ld~al~r~~rf~~~i~i~~p~-~~~R~ 389 (815)
.+...|+..|+.- ....+++++++.|..+ .+.+++.. ||...+.+..|. .+.+.
T Consensus 159 -----------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~ 225 (350)
T CHL00081 159 -----------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRV 225 (350)
T ss_pred -----------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHH
Confidence 3445566666431 1234688888888665 58888887 899999999997 58999
Q ss_pred HHHHHH
Q 003503 390 EILRIH 395 (815)
Q Consensus 390 ~il~~~ 395 (815)
+|++..
T Consensus 226 ~il~~~ 231 (350)
T CHL00081 226 KIVEQR 231 (350)
T ss_pred HHHHhh
Confidence 998754
No 324
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.72 E-value=1.8e-07 Score=94.06 Aligned_cols=142 Identities=18% Similarity=0.265 Sum_probs=91.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCe------------------------EEEEechhhhhhhhchhHHHHHHHHHHH
Q 003503 249 PKGILLYGPPGSGKTLIARAVANETGAF------------------------FFLINGPEIMSKLAGESESNLRKAFEEA 304 (815)
Q Consensus 249 ~~~VLL~GppGtGKTtLar~la~~l~~~------------------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a 304 (815)
+..+||+||+|+|||++++.++..+... +..+... +. .-....++.+.+.+
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~--~~~~~~i~~i~~~~ 88 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQ--SIKVDQVRELVEFL 88 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cC--cCCHHHHHHHHHHH
Confidence 4679999999999999999999887431 1111110 00 01224555555554
Q ss_pred Hh----cCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEc
Q 003503 305 EK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDI 380 (815)
Q Consensus 305 ~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i 380 (815)
.. ....++||||+|.+.. ...+.|+..++.... ..++|.+++.+..+.+++++ |+ ..+.+
T Consensus 89 ~~~~~~~~~kviiide~~~l~~-----------~~~~~Ll~~le~~~~--~~~~il~~~~~~~l~~~i~s--r~-~~~~~ 152 (188)
T TIGR00678 89 SRTPQESGRRVVIIEDAERMNE-----------AAANALLKTLEEPPP--NTLFILITPSPEKLLPTIRS--RC-QVLPF 152 (188)
T ss_pred ccCcccCCeEEEEEechhhhCH-----------HHHHHHHHHhcCCCC--CeEEEEEECChHhChHHHHh--hc-EEeeC
Confidence 33 3456999999988743 234567777776332 34455556677889999987 55 57899
Q ss_pred CCCCHHHHHHHHHHHhcCCccccchhhhHHHhhcCC
Q 003503 381 GVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHG 416 (815)
Q Consensus 381 ~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g 416 (815)
..|+.++..+++... .+. +..+..++..+.|
T Consensus 153 ~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 153 PPLSEEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred CCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 999999988888765 222 2334555555444
No 325
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.71 E-value=1.2e-07 Score=93.81 Aligned_cols=135 Identities=19% Similarity=0.261 Sum_probs=84.6
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-----eEEEEe
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA-----FFFLIN 281 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~-----~~i~v~ 281 (815)
+++++..+.||+|.++.++.+.-+..- ..-.+++|.||||+||||-+.+||.++-. -++.+|
T Consensus 19 eKYrP~~l~dIVGNe~tv~rl~via~~-------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELN 85 (333)
T KOG0991|consen 19 EKYRPSVLQDIVGNEDTVERLSVIAKE-------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELN 85 (333)
T ss_pred HhhCchHHHHhhCCHHHHHHHHHHHHc-------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhcc
Confidence 567888999999999999988665542 12347999999999999999999988632 245666
Q ss_pred chhhhhhhhchhHHHHHHHHHHHHh-c---CCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEe
Q 003503 282 GPEIMSKLAGESESNLRKAFEEAEK-N---APSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGA 357 (815)
Q Consensus 282 ~~~l~~~~~g~~~~~l~~vf~~a~~-~---~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~a 357 (815)
+++-.+- .....+++. |.+-+- . .-.|+++||.|++... ....|...|+-+....++. .+
T Consensus 86 ASdeRGI--DvVRn~IK~-FAQ~kv~lp~grhKIiILDEADSMT~g-----------AQQAlRRtMEiyS~ttRFa--la 149 (333)
T KOG0991|consen 86 ASDERGI--DVVRNKIKM-FAQKKVTLPPGRHKIIILDEADSMTAG-----------AQQALRRTMEIYSNTTRFA--LA 149 (333)
T ss_pred Ccccccc--HHHHHHHHH-HHHhhccCCCCceeEEEeeccchhhhH-----------HHHHHHHHHHHHcccchhh--hh
Confidence 6543221 111223333 333222 1 2259999999987522 2344445555444433333 36
Q ss_pred cCCCCCCCHHhhc
Q 003503 358 TNRPNSIDPALRR 370 (815)
Q Consensus 358 tn~~~~ld~al~r 370 (815)
+|..+.|=+.+.+
T Consensus 150 CN~s~KIiEPIQS 162 (333)
T KOG0991|consen 150 CNQSEKIIEPIQS 162 (333)
T ss_pred hcchhhhhhhHHh
Confidence 7777766555554
No 326
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.70 E-value=7.4e-07 Score=93.56 Aligned_cols=60 Identities=37% Similarity=0.636 Sum_probs=45.4
Q ss_pred ccccChHHHHHHH---HHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CeEEEEechhh
Q 003503 215 DDVGGVRKQMAQI---RELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG--AFFFLINGPEI 285 (815)
Q Consensus 215 ~~i~G~~~~~~~i---~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~--~~~i~v~~~~l 285 (815)
+.++|+.++-+.. .+++.. |-..+++||+.||||||||.||-++|+++| .+|+.++++++
T Consensus 39 dG~VGQ~~AReAaGvIv~mik~-----------gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEi 103 (450)
T COG1224 39 DGLVGQEEAREAAGVIVKMIKQ-----------GKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEI 103 (450)
T ss_pred CcccchHHHHHhhhHHHHHHHh-----------CcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeecccee
Confidence 4577877766553 444432 446789999999999999999999999997 45777776655
No 327
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.70 E-value=6.8e-08 Score=110.31 Aligned_cols=144 Identities=24% Similarity=0.371 Sum_probs=86.3
Q ss_pred cccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCc--EEEEeccchh---
Q 003503 485 VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELL--- 559 (815)
Q Consensus 485 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~--~i~v~~~~l~--- 559 (815)
..++++.|++.+++.+.-.+ .....++|+||||||||++++.+++.+... -..+....+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 36788888887766554322 223469999999999999999999865311 0111111110
Q ss_pred -----------------------hhccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHH
Q 003503 560 -----------------------TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLL 616 (815)
Q Consensus 560 -----------------------~~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL 616 (815)
...+|.....-...+..|.. .+|||||++.+. ..+++.|+
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~---GvLfLDEi~e~~--------------~~~~~~L~ 316 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHN---GVLFLDELPEFK--------------RSVLDALR 316 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhccCC---CeEecCChhhCC--------------HHHHHHHH
Confidence 00111110000112333433 599999998863 34556666
Q ss_pred hccccCC-----------CCCcEEEEEecCCC------C-----------------CCCccccCCCCCcceeeccCCCHH
Q 003503 617 TEMDGMN-----------AKKTVFIIGATNRP------D-----------------IIDPALLRPGRLDQLIYIPLPDEA 662 (815)
Q Consensus 617 ~~ld~~~-----------~~~~v~vi~aTn~~------~-----------------~ld~allr~gRf~~~i~~~~p~~~ 662 (815)
+.|+... ...++.+|+|+|.- + .|...|+. |||.++.+++++..
T Consensus 317 ~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~ 394 (499)
T TIGR00368 317 EPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPE 394 (499)
T ss_pred HHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHH
Confidence 6554321 12468899999852 1 36777887 99999999987765
No 328
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.70 E-value=8e-08 Score=103.70 Aligned_cols=59 Identities=17% Similarity=0.285 Sum_probs=45.6
Q ss_pred cccccchhhhhhhccccCCCCChhhhhhhcCC-CCcceEEeCCCCCChhHHHHHHHHHhCC-------cEEEEec
Q 003503 489 DIGGLDNVKRELQETVQYPVEHPEKFEKFGMS-PSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISVKG 555 (815)
Q Consensus 489 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~-~~~gilL~GppGtGKT~lakala~~~~~-------~~i~v~~ 555 (815)
++.|+++.+.++.+.+.... .|.. ..+.++|+|||||||||||++|++.++. +++.+++
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred hccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 79999999888876654321 1222 2355899999999999999999999975 7888877
No 329
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.69 E-value=2.4e-07 Score=108.00 Aligned_cols=63 Identities=17% Similarity=0.373 Sum_probs=51.6
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeE
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF 277 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~ 277 (815)
+++.+..++++.|.++.++.++.++.-. .++..+++.++|+|||||||||+++++|++++..+
T Consensus 76 eKyrP~~ldel~~~~~ki~~l~~~l~~~--------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~ 138 (637)
T TIGR00602 76 EKYKPETQHELAVHKKKIEEVETWLKAQ--------VLENAPKRILLITGPSGCGKSTTIKILSKELGIQV 138 (637)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhc--------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHH
Confidence 5778899999999999999998887631 12334566799999999999999999999987543
No 330
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.68 E-value=1.8e-07 Score=109.14 Aligned_cols=202 Identities=12% Similarity=0.156 Sum_probs=116.9
Q ss_pred cCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEE-eccc---
Q 003503 482 VPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISV-KGPE--- 557 (815)
Q Consensus 482 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v-~~~~--- 557 (815)
..+..++++.|.++..+.|+.++.... ++..+.+.++|+||||||||++++++|++++..++.. +...
T Consensus 78 yrP~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~ 149 (637)
T TIGR00602 78 YKPETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDF 149 (637)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcc
Confidence 345567888888877777766543210 1223334499999999999999999999988655431 1110
Q ss_pred h-------------hhhccCccHHHHHHHHHHHhh----------CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHH
Q 003503 558 L-------------LTMWFGESEANVREIFDKARQ----------SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQ 614 (815)
Q Consensus 558 l-------------~~~~~g~se~~i~~~F~~a~~----------~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~ 614 (815)
. +..+ .......+.+...+.. ....|||+|||+.+... ..+.+..
T Consensus 150 ~~~~~~~~~s~~~~~~~~-~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-----------~~~~lq~ 217 (637)
T TIGR00602 150 QKNDHKVTLSLESCFSNF-QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-----------DTRALHE 217 (637)
T ss_pred cccccccchhhhhccccc-cchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-----------hHHHHHH
Confidence 0 0011 1122334455555542 24579999999987532 1224445
Q ss_pred HHh-ccccCCCCCcEEEEEecC-CCC--------------CCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCC--
Q 003503 615 LLT-EMDGMNAKKTVFIIGATN-RPD--------------IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSP-- 676 (815)
Q Consensus 615 lL~-~ld~~~~~~~v~vi~aTn-~~~--------------~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~-- 676 (815)
+|. ... . ...+.+|++++ .|. .|.++++..-|. .+|.|++.......+.|+..+....
T Consensus 218 lLr~~~~--e-~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~ 293 (637)
T TIGR00602 218 ILRWKYV--S-IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKK 293 (637)
T ss_pred HHHHHhh--c-CCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhc
Confidence 544 221 1 22333444333 221 134677732244 3799999999998888877776431
Q ss_pred CC------CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 003503 677 IS------PDVDLSALARYTHGFSGADITEVCQRACKYAIR 711 (815)
Q Consensus 677 ~~------~~~~~~~la~~t~g~sg~di~~l~~~a~~~a~~ 711 (815)
.. ....+..|+. .+++||+.++....+.+..
T Consensus 294 ~~~~~~~p~~~~l~~I~~----~s~GDiRsAIn~LQf~~~~ 330 (637)
T TIGR00602 294 NGEKIKVPKKTSVELLCQ----GCSGDIRSAINSLQFSSSK 330 (637)
T ss_pred cccccccCCHHHHHHHHH----hCCChHHHHHHHHHHHHhc
Confidence 11 1223555555 5566999888777766554
No 331
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.68 E-value=7.6e-08 Score=104.54 Aligned_cols=133 Identities=18% Similarity=0.245 Sum_probs=94.1
Q ss_pred CCCcceEEeCCCCCChhHHHHHHHHHhCCc-------------------------EEEEeccchhh--------hc----
Q 003503 520 SPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------------------FISVKGPELLT--------MW---- 562 (815)
Q Consensus 520 ~~~~gilL~GppGtGKT~lakala~~~~~~-------------------------~i~v~~~~l~~--------~~---- 562 (815)
+.+.++||+||+|+||+++|+++|..+... ++.+....... .|
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 556789999999999999999999876321 22221110000 00
Q ss_pred --cC---------ccHHHHHHHHHHH----hhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCc
Q 003503 563 --FG---------ESEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKT 627 (815)
Q Consensus 563 --~g---------~se~~i~~~F~~a----~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~ 627 (815)
-| -.-..||.+.+.. ......|++||++|.+. ...-|.||+.|+ ++..+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~--------------~~AaNaLLKtLE--EPp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN--------------VAAANALLKTLE--EPPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC--------------HHHHHHHHHHhc--CCCcC
Confidence 00 0123456655544 33445799999999983 335688999998 45678
Q ss_pred EEEEEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHH
Q 003503 628 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKAC 671 (815)
Q Consensus 628 v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~ 671 (815)
+++|.+|++|+.|.|.+++ |+ ..+.|++|+.++..+.+...
T Consensus 163 t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 8899999999999999998 88 58999999999988888754
No 332
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.67 E-value=6.8e-08 Score=112.85 Aligned_cols=31 Identities=16% Similarity=0.353 Sum_probs=27.6
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANET 273 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l 273 (815)
++.+.++..+.|.||+|||||||+++|++..
T Consensus 20 s~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 50 (520)
T TIGR03269 20 SFTIEEGEVLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 3456788999999999999999999999985
No 333
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.66 E-value=4.8e-08 Score=113.82 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=27.8
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l~ 274 (815)
++.+.+++.+.|.||+|+|||||+++|++.+.
T Consensus 25 s~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 56 (510)
T PRK09700 25 NLTVYPGEIHALLGENGAGKSTLMKVLSGIHE 56 (510)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC
Confidence 34567889999999999999999999998763
No 334
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.66 E-value=4.9e-08 Score=113.60 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=27.9
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l~ 274 (815)
++.+.++..+.|.||+|+|||||+++|++.+.
T Consensus 31 sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~ 62 (510)
T PRK15439 31 DFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP 62 (510)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34567888999999999999999999998763
No 335
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.66 E-value=2.5e-07 Score=108.48 Aligned_cols=132 Identities=23% Similarity=0.298 Sum_probs=89.5
Q ss_pred cceEEeCCCCCChhHHHHHHHHHhCC--cEEEEeccchhhhccCcc--HHHHH---H-----HHHHHhhCCCeEEEEecc
Q 003503 523 KGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGES--EANVR---E-----IFDKARQSAPCVLFFDEL 590 (815)
Q Consensus 523 ~gilL~GppGtGKT~lakala~~~~~--~~i~v~~~~l~~~~~g~s--e~~i~---~-----~F~~a~~~~p~ilfiDEi 590 (815)
.++||.|+||||||++|++++..+.. +|+.+.........+|.. +..+. . ++..| ...+||+|||
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A---~~GvL~lDEi 93 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEA---PRGVLYVDMA 93 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeC---CCCcEeccch
Confidence 46999999999999999999998764 588776432223333331 01000 0 11112 1249999999
Q ss_pred hhhhhccCCCCCCCCchHHHHHHHHHhccccCC-----------CCCcEEEEEecCCCC---CCCccccCCCCCcceeec
Q 003503 591 DSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN-----------AKKTVFIIGATNRPD---IIDPALLRPGRLDQLIYI 656 (815)
Q Consensus 591 d~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----------~~~~v~vi~aTn~~~---~ld~allr~gRf~~~i~~ 656 (815)
+.+- ..+.+.|+..|+.-. ...++.||+|+|..+ .|.++|+. ||+.++.+
T Consensus 94 ~rl~--------------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~ 157 (589)
T TIGR02031 94 NLLD--------------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSL 157 (589)
T ss_pred hhCC--------------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeec
Confidence 9974 345666777665321 123578999999875 68889998 99998877
Q ss_pred c-CCCHHHHHHHHHHHhc
Q 003503 657 P-LPDEASRLQIFKACLR 673 (815)
Q Consensus 657 ~-~p~~~~r~~Il~~~l~ 673 (815)
. +|+.++|.+|++..+.
T Consensus 158 ~~~~~~~er~eil~~~~~ 175 (589)
T TIGR02031 158 EDVASQDLRVEIVRRERC 175 (589)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 6 4677889999988763
No 336
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.66 E-value=5.4e-08 Score=112.85 Aligned_cols=32 Identities=34% Similarity=0.485 Sum_probs=28.1
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l~ 274 (815)
++.+.++..+.|.||+|+|||||+++|++.+.
T Consensus 23 sl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~ 54 (490)
T PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAGELP 54 (490)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 34567899999999999999999999998763
No 337
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=2.2e-07 Score=96.64 Aligned_cols=67 Identities=31% Similarity=0.398 Sum_probs=52.8
Q ss_pred cccChHHHHHHHHHHHHcccCChhhHhhhCC-CCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEec
Q 003503 216 DVGGVRKQMAQIRELVELPLRHPQLFKSIGV-KPPKGILLYGPPGSGKTLIARAVANETGAFFFLING 282 (815)
Q Consensus 216 ~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i-~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~ 282 (815)
.|.|+++.++.+-=.+...+++.++-..+.- -.|++||..||.|+|||-+||.||+..+++|+.|.+
T Consensus 16 yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEA 83 (444)
T COG1220 16 YIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEA 83 (444)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEe
Confidence 3899999998886666655555555444432 357999999999999999999999999999987754
No 338
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.66 E-value=1.1e-08 Score=93.45 Aligned_cols=102 Identities=26% Similarity=0.347 Sum_probs=56.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCeEEEEech-hhh-----hhhhch-----hHHHHHHHHHHHHhcCCcEEEeccccc
Q 003503 251 GILLYGPPGSGKTLIARAVANETGAFFFLINGP-EIM-----SKLAGE-----SESNLRKAFEEAEKNAPSIIFIDELDS 319 (815)
Q Consensus 251 ~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~-~l~-----~~~~g~-----~~~~l~~vf~~a~~~~p~il~iDEid~ 319 (815)
||||.|+||+|||++++++|+.++..+..|.+. ++. +...-. ..-.-+-+| ..|+++|||..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 689999999999999999999999999888763 332 211100 000011122 24999999987
Q ss_pred ccCCCCCchhHHHHHHHHHHHHhhhccc---------CCCcEEEEEecCCCC-----CCCHHhhc
Q 003503 320 IAPKREKTHGEVERRIVSQLLTLMDGLK---------SRAHVIVMGATNRPN-----SIDPALRR 370 (815)
Q Consensus 320 l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~~~~vivi~atn~~~-----~ld~al~r 370 (815)
..+ ++.+.|++.|.+.+ -...++||+|.|+.+ .+++++..
T Consensus 74 app-----------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D 127 (131)
T PF07726_consen 74 APP-----------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD 127 (131)
T ss_dssp S-H-----------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT
T ss_pred CCH-----------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc
Confidence 753 45677888775422 234588999999876 45666654
No 339
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.65 E-value=7e-08 Score=112.96 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=28.2
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l~ 274 (815)
++.+.++..+.|+||+|||||||+++|++.+.
T Consensus 21 sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~ 52 (530)
T PRK15064 21 SVKFGGGNRYGLIGANGCGKSTFMKILGGDLE 52 (530)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34568899999999999999999999998763
No 340
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.65 E-value=7.5e-07 Score=97.03 Aligned_cols=152 Identities=13% Similarity=0.181 Sum_probs=102.3
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC--------eEEEEechh
Q 003503 213 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA--------FFFLINGPE 284 (815)
Q Consensus 213 ~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~--------~~i~v~~~~ 284 (815)
+|++|.|++..++.++..+... .-+..+||+||+|+|||++|+.+++.+-. .+..+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~------------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKN------------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcC------------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 5889999999999998887531 23456899999999999999999997632 122222110
Q ss_pred hhhhhhchhHHHHHHHHHHH----HhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCC
Q 003503 285 IMSKLAGESESNLRKAFEEA----EKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNR 360 (815)
Q Consensus 285 l~~~~~g~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~ 360 (815)
+. .-.-..++.+.+.. ......|++||++|.+. ....+.|+..++... ..+++|.+|+.
T Consensus 70 --~~--~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~-----------~~a~naLLK~LEepp--~~t~~il~~~~ 132 (313)
T PRK05564 70 --KK--SIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT-----------EQAQNAFLKTIEEPP--KGVFIILLCEN 132 (313)
T ss_pred --CC--CCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC-----------HHHHHHHHHHhcCCC--CCeEEEEEeCC
Confidence 01 01123455555533 33445699999988763 234567888887543 34555556677
Q ss_pred CCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHh
Q 003503 361 PNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHT 396 (815)
Q Consensus 361 ~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~ 396 (815)
++.+.+.+++ |. ..+.+..|+.++-...+....
T Consensus 133 ~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 133 LEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred hHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHh
Confidence 8899999988 55 578899999888777776443
No 341
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.65 E-value=6.8e-08 Score=111.98 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=27.8
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l~ 274 (815)
++.+.++..+.|.||+|+|||||+++|++.+.
T Consensus 18 s~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 49 (491)
T PRK10982 18 NLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ 49 (491)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 34567889999999999999999999998763
No 342
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.64 E-value=1.5e-07 Score=110.10 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=28.3
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l~ 274 (815)
++.+.+++.+.|.||+|||||||+++|++.+.
T Consensus 29 sl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~ 60 (529)
T PRK15134 29 SLQIEAGETLALVGESGSGKSVTALSILRLLP 60 (529)
T ss_pred EEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34567889999999999999999999999875
No 343
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.64 E-value=1.5e-07 Score=102.64 Aligned_cols=169 Identities=22% Similarity=0.299 Sum_probs=98.1
Q ss_pred CcceEEeCCCCCChhHHHHHHHHHhC---CcEEEEeccchhhhc-----cCccH-------HHHHHHHHHHhhCCCeEEE
Q 003503 522 SKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTMW-----FGESE-------ANVREIFDKARQSAPCVLF 586 (815)
Q Consensus 522 ~~gilL~GppGtGKT~lakala~~~~---~~~i~v~~~~l~~~~-----~g~se-------~~i~~~F~~a~~~~p~ilf 586 (815)
...|||+|++||||+++|++|-..+. .+|+.|++..+.... .|... ..-...|..|. ...||
T Consensus 22 ~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~---gGtL~ 98 (329)
T TIGR02974 22 DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERAD---GGTLF 98 (329)
T ss_pred CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCC---CCEEE
Confidence 34699999999999999999987764 689999997653211 11100 00112344443 35999
Q ss_pred EecchhhhhccCCCCCCCCchHHHHHHHHHhccccCC---------CCCcEEEEEecCCC-------CCCCccccCCCCC
Q 003503 587 FDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN---------AKKTVFIIGATNRP-------DIIDPALLRPGRL 650 (815)
Q Consensus 587 iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~---------~~~~v~vi~aTn~~-------~~ld~allr~gRf 650 (815)
||||+.|.. .+...|+..++.-. ...++-||++||.. ..+.+.|.. ||
T Consensus 99 Ldei~~L~~--------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl 162 (329)
T TIGR02974 99 LDELATASL--------------LVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RL 162 (329)
T ss_pred eCChHhCCH--------------HHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--Hh
Confidence 999999842 24445555554321 12357889999864 124455555 66
Q ss_pred c-ceeeccCCCH--HHHHHHHHHHhcc----CCCC--Cccc---HHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 003503 651 D-QLIYIPLPDE--ASRLQIFKACLRK----SPIS--PDVD---LSALARYTHGFSGADITEVCQRACKYA 709 (815)
Q Consensus 651 ~-~~i~~~~p~~--~~r~~Il~~~l~~----~~~~--~~~~---~~~la~~t~g~sg~di~~l~~~a~~~a 709 (815)
. ..|.+|+... ++...+++.++.+ .+.. ..++ +..|..+.=--+-++|++++++|+..+
T Consensus 163 ~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 163 AFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred cchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 3 4556665542 3344455554432 2211 1222 333433332234579999999988765
No 344
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.64 E-value=1.1e-07 Score=94.09 Aligned_cols=182 Identities=18% Similarity=0.237 Sum_probs=99.6
Q ss_pred CCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhC-----CcEEEEeccc
Q 003503 483 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPE 557 (815)
Q Consensus 483 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~-----~~~i~v~~~~ 557 (815)
.+..+.||+|.++..+.|.-.... | ...+++|.|||||||||.+.++|+++- -.++.++.++
T Consensus 22 rP~~l~dIVGNe~tv~rl~via~~-----------g--nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASd 88 (333)
T KOG0991|consen 22 RPSVLQDIVGNEDTVERLSVIAKE-----------G--NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASD 88 (333)
T ss_pred CchHHHHhhCCHHHHHHHHHHHHc-----------C--CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcc
Confidence 345678999999887776543321 2 123699999999999999999999863 2356777766
Q ss_pred hhhhccCccHHHHHHHHHHHhhCC----CeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEe
Q 003503 558 LLTMWFGESEANVREIFDKARQSA----PCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGA 633 (815)
Q Consensus 558 l~~~~~g~se~~i~~~F~~a~~~~----p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~a 633 (815)
-.+- ..-++--+.|..-+-.- -.|+++||+|++-. +++.+.+ ..|+-+... .-+..+
T Consensus 89 eRGI---DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~-------gAQQAlR-------RtMEiyS~t--tRFala 149 (333)
T KOG0991|consen 89 ERGI---DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA-------GAQQALR-------RTMEIYSNT--TRFALA 149 (333)
T ss_pred cccc---HHHHHHHHHHHHhhccCCCCceeEEEeeccchhhh-------HHHHHHH-------HHHHHHccc--chhhhh
Confidence 4321 12233345554433222 25999999999842 1122333 333333222 234556
Q ss_pred cCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHh--ccCCCCCcccHHHHHHHcCCCCHHHHHHHHHH
Q 003503 634 TNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACL--RKSPISPDVDLSALARYTHGFSGADITEVCQR 704 (815)
Q Consensus 634 Tn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l--~~~~~~~~~~~~~la~~t~g~sg~di~~l~~~ 704 (815)
+|..+.|=+.+.+ |+. ++.|...+..+...-+.... ++.+... ..++.+....+| |+++.++.
T Consensus 150 CN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~-dgLeaiifta~G----DMRQalNn 214 (333)
T KOG0991|consen 150 CNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTD-DGLEAIIFTAQG----DMRQALNN 214 (333)
T ss_pred hcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCc-chHHHhhhhccc----hHHHHHHH
Confidence 6776665444443 443 33334444433333222222 2334332 235555544443 66655544
No 345
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=1.1e-06 Score=96.93 Aligned_cols=180 Identities=17% Similarity=0.222 Sum_probs=114.3
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeE-----------
Q 003503 209 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF----------- 277 (815)
Q Consensus 209 ~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~----------- 277 (815)
..+-.+++|.|++..++.+.+.+... .-+..+||+||+|+||+++|.++|+.+-..-
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~------------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~ 80 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSG------------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPP 80 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccc
Confidence 35667889999999999998877641 2345799999999999999999998863210
Q ss_pred --EEEe--ch-----------hhh--hh---hhc------hhHHHHHHHHHHH----HhcCCcEEEecccccccCCCCCc
Q 003503 278 --FLIN--GP-----------EIM--SK---LAG------ESESNLRKAFEEA----EKNAPSIIFIDELDSIAPKREKT 327 (815)
Q Consensus 278 --i~v~--~~-----------~l~--~~---~~g------~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~ 327 (815)
+.+. |. ++. .. ..+ -.-..+|.+.+.. ....+.|++|||+|.+-
T Consensus 81 ~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~------ 154 (365)
T PRK07471 81 TSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN------ 154 (365)
T ss_pred ccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC------
Confidence 0000 00 000 00 000 0123355554443 23567799999999773
Q ss_pred hhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhh
Q 003503 328 HGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDL 407 (815)
Q Consensus 328 ~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l 407 (815)
....+.|+..++... ...++|.+|+.++.+.+.+++ |+ ..+.++.|+.++-.++|...... ..+..+
T Consensus 155 -----~~aanaLLK~LEepp--~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~~~ 221 (365)
T PRK07471 155 -----ANAANALLKVLEEPP--ARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD---LPDDPR 221 (365)
T ss_pred -----HHHHHHHHHHHhcCC--CCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc---CCHHHH
Confidence 234567777777532 345666688888888888877 55 67899999999988888754321 111122
Q ss_pred hHHHhhcCCCcH
Q 003503 408 ERVAKDTHGYVG 419 (815)
Q Consensus 408 ~~la~~t~g~~~ 419 (815)
..++..+.|-.+
T Consensus 222 ~~l~~~s~Gsp~ 233 (365)
T PRK07471 222 AALAALAEGSVG 233 (365)
T ss_pred HHHHHHcCCCHH
Confidence 455555655444
No 346
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.63 E-value=7.1e-08 Score=112.07 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=27.9
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l~ 274 (815)
++.+.+++.+.|+||+|+|||||+++|++.+.
T Consensus 24 s~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~ 55 (501)
T PRK10762 24 ALNVYPGRVMALVGENGAGKSTMMKVLTGIYT 55 (501)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34567889999999999999999999998763
No 347
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.63 E-value=3.6e-06 Score=97.03 Aligned_cols=78 Identities=23% Similarity=0.293 Sum_probs=54.3
Q ss_pred cCCCCcceEEeCCCCCChhHHHHHHHHHh---CCcEEEEeccchhhhc------cC----------------------cc
Q 003503 518 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMW------FG----------------------ES 566 (815)
Q Consensus 518 ~~~~~~gilL~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~~------~g----------------------~s 566 (815)
|+.+...+|+.||||+|||+|+-.++... +.+.+++...+-...+ +| ..
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 66666679999999999999999888764 3455555543321110 00 11
Q ss_pred HHHHHHHHHHHhhCCCeEEEEecchhhhh
Q 003503 567 EANVREIFDKARQSAPCVLFFDELDSIAT 595 (815)
Q Consensus 567 e~~i~~~F~~a~~~~p~ilfiDEid~l~~ 595 (815)
+..+..+.+......|.+++||=+..+..
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 45667777888888899999999988754
No 348
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.63 E-value=7.6e-08 Score=105.20 Aligned_cols=172 Identities=24% Similarity=0.301 Sum_probs=105.3
Q ss_pred cceEEeCCCCCChhHHHHHHHHHh----CCcEEEEeccchhhh-------------ccCccHHHHHHHHHHHhhCCCeEE
Q 003503 523 KGVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPELLTM-------------WFGESEANVREIFDKARQSAPCVL 585 (815)
Q Consensus 523 ~gilL~GppGtGKT~lakala~~~----~~~~i~v~~~~l~~~-------------~~g~se~~i~~~F~~a~~~~p~il 585 (815)
..+|++|++||||+.+|++|...+ ..|||.+||..+... |.| ....-.-+|+.|.+. .|
T Consensus 102 ~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaftG-a~~~k~Glfe~A~GG---tL 177 (403)
T COG1221 102 LPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTG-AQGGKAGLFEQANGG---TL 177 (403)
T ss_pred CcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceeec-ccCCcCchheecCCC---EE
Confidence 459999999999999999998554 458999999877532 233 223334567777665 99
Q ss_pred EEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCC---------CCCcEEEEEecCCC--CCCCc--cccCCCCCcc
Q 003503 586 FFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN---------AKKTVFIIGATNRP--DIIDP--ALLRPGRLDQ 652 (815)
Q Consensus 586 fiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~---------~~~~v~vi~aTn~~--~~ld~--allr~gRf~~ 652 (815)
|+|||..+... ....||+.||... -..+|.+|+|||-. +.+-. .+.+. |+..
T Consensus 178 fLDEI~~LP~~--------------~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~~~ 242 (403)
T COG1221 178 FLDEIHRLPPE--------------GQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRR-LNIL 242 (403)
T ss_pred ehhhhhhCCHh--------------HHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHHHhhcchhhh-hcCc
Confidence 99999998532 3455666666522 12468899999742 22222 34431 5556
Q ss_pred eeeccCCCH--HHHHHHHHHHh----ccCCCCCcccH----HHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Q 003503 653 LIYIPLPDE--ASRLQIFKACL----RKSPISPDVDL----SALARYTHGFSGADITEVCQRACKYAIREN 713 (815)
Q Consensus 653 ~i~~~~p~~--~~r~~Il~~~l----~~~~~~~~~~~----~~la~~t~g~sg~di~~l~~~a~~~a~~~~ 713 (815)
.|.+|+.-+ +++..+.+.++ ++.......+. ..|-.+.---+-+++++++++++..+....
T Consensus 243 ~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~~~~~ 313 (403)
T COG1221 243 TITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQASGEG 313 (403)
T ss_pred eecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHhcccc
Confidence 666665543 22333344444 44443332332 222222222245899999999999886443
No 349
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=8e-08 Score=99.19 Aligned_cols=98 Identities=33% Similarity=0.520 Sum_probs=72.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh-hhhhchhHH-HHHHHHHHHH----hcCCcEEEecccccccC
Q 003503 249 PKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM-SKLAGESES-NLRKAFEEAE----KNAPSIIFIDELDSIAP 322 (815)
Q Consensus 249 ~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~-~~~~g~~~~-~l~~vf~~a~----~~~p~il~iDEid~l~~ 322 (815)
..+|||+||+|||||.||+.||+.++.+|..-++..+. ..|+|+--+ -+-.++|.+. .....|++|||||.+..
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIar 176 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIAR 176 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhc
Confidence 46799999999999999999999999999888877665 357776544 3456666543 23557999999999987
Q ss_pred CCCCch---hHHHHHHHHHHHHhhhcc
Q 003503 323 KREKTH---GEVERRIVSQLLTLMDGL 346 (815)
Q Consensus 323 ~~~~~~---~~~~~~v~~~Ll~~ld~~ 346 (815)
+...++ +-...-+...|+..++|-
T Consensus 177 kSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 177 KSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred cCCCCCcccccCchHHHHHHHHHHcCc
Confidence 764432 112245667888888763
No 350
>PLN03073 ABC transporter F family; Provisional
Probab=98.62 E-value=7.8e-08 Score=115.09 Aligned_cols=30 Identities=30% Similarity=0.309 Sum_probs=26.8
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHH
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANE 272 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~ 272 (815)
+|.+.++..+.|+||+|+|||||+++|++.
T Consensus 197 sl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~ 226 (718)
T PLN03073 197 SVTLAFGRHYGLVGRNGTGKTTFLRYMAMH 226 (718)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 456788999999999999999999999974
No 351
>PRK08116 hypothetical protein; Validated
Probab=98.62 E-value=6.9e-08 Score=102.19 Aligned_cols=129 Identities=26% Similarity=0.262 Sum_probs=76.8
Q ss_pred CcceEEeCCCCCChhHHHHHHHHHh---CCcEEEEeccchhhhcc----CccHHHHHHHHHHHhhCCCeEEEEecchhhh
Q 003503 522 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWF----GESEANVREIFDKARQSAPCVLFFDELDSIA 594 (815)
Q Consensus 522 ~~gilL~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~~~----g~se~~i~~~F~~a~~~~p~ilfiDEid~l~ 594 (815)
..|++|+|++|||||+||.++++.+ +.+++.++.++++..+. +.+......+++.... ..+|+|||+...-
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~--~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVN--ADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcC--CCEEEEecccCCC
Confidence 3579999999999999999999986 56788888888776432 1111222334444332 3599999986521
Q ss_pred hccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCC-CC----CCccccCCCCC---cceeeccCCCHHHHHH
Q 003503 595 TQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP-DI----IDPALLRPGRL---DQLIYIPLPDEASRLQ 666 (815)
Q Consensus 595 ~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~-~~----ld~allr~gRf---~~~i~~~~p~~~~r~~ 666 (815)
...+. ...|...++..... +..+|.|||.+ +. ++..+.. |+ ...|.+.-+|. |..
T Consensus 192 ---------~t~~~---~~~l~~iin~r~~~-~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~--R~~ 254 (268)
T PRK08116 192 ---------DTEWA---REKVYNIIDSRYRK-GLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY--RKE 254 (268)
T ss_pred ---------CCHHH---HHHHHHHHHHHHHC-CCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh--hHH
Confidence 11233 34444445443222 23466677765 22 4556665 64 34466666665 444
Q ss_pred HHH
Q 003503 667 IFK 669 (815)
Q Consensus 667 Il~ 669 (815)
+.+
T Consensus 255 ~~~ 257 (268)
T PRK08116 255 IAK 257 (268)
T ss_pred HHH
Confidence 444
No 352
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.61 E-value=3.1e-07 Score=102.60 Aligned_cols=134 Identities=20% Similarity=0.257 Sum_probs=75.9
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCC--eEEEEec-----hhhhhhhhchhHHHHHHHHHHHHhc---CCcEEEecc
Q 003503 247 KPPKGILLYGPPGSGKTLIARAVANETGA--FFFLING-----PEIMSKLAGESESNLRKAFEEAEKN---APSIIFIDE 316 (815)
Q Consensus 247 ~~~~~VLL~GppGtGKTtLar~la~~l~~--~~i~v~~-----~~l~~~~~g~~~~~l~~vf~~a~~~---~p~il~iDE 316 (815)
..+.+|||.||||||||++|++|+...+. +|..+.+ .++++..... ...-..-|.....+ ...++|+||
T Consensus 37 lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~-~~~~~g~f~r~~~G~L~~A~lLfLDE 115 (498)
T PRK13531 37 LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQ-ALKDEGRYQRLTSGYLPEAEIVFLDE 115 (498)
T ss_pred ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHh-hhhhcCchhhhcCCccccccEEeecc
Confidence 45789999999999999999999987653 3333322 2332211000 00001112111111 234899999
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHhhhccc--------CCCcEEEEEecCCCCC---CCHHhhccCCcceEEEcCCCC-
Q 003503 317 LDSIAPKREKTHGEVERRIVSQLLTLMDGLK--------SRAHVIVMGATNRPNS---IDPALRRFGRFDREIDIGVPD- 384 (815)
Q Consensus 317 id~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--------~~~~vivi~atn~~~~---ld~al~r~~rf~~~i~i~~p~- 384 (815)
|..+. ....+.|+..|..-. .-+..+++++||.... ..+++.. ||...+.+++|+
T Consensus 116 I~ras-----------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~ 182 (498)
T PRK13531 116 IWKAG-----------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQD 182 (498)
T ss_pred cccCC-----------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCCc
Confidence 97654 345677777774321 1122344455564322 2245654 887888999997
Q ss_pred HHHHHHHHHH
Q 003503 385 EVGRLEILRI 394 (815)
Q Consensus 385 ~~~R~~il~~ 394 (815)
.++..++|..
T Consensus 183 ~~~e~~lL~~ 192 (498)
T PRK13531 183 KANFRSMLTS 192 (498)
T ss_pred hHHHHHHHHc
Confidence 4555777764
No 353
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.60 E-value=6.4e-07 Score=94.05 Aligned_cols=177 Identities=15% Similarity=0.255 Sum_probs=103.5
Q ss_pred CcceEEeCCCCCChhHHHHHHHHHhC---------CcEEEEeccchhh---h-----------c-cCcc-HHHHHHHHHH
Q 003503 522 SKGVLFYGPPGCGKTLLAKAIANECQ---------ANFISVKGPELLT---M-----------W-FGES-EANVREIFDK 576 (815)
Q Consensus 522 ~~gilL~GppGtGKT~lakala~~~~---------~~~i~v~~~~l~~---~-----------~-~g~s-e~~i~~~F~~ 576 (815)
..++||+|++|.|||++++.+..... .|++.+..+.--+ - | ...+ .+.-..+..-
T Consensus 61 mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~l 140 (302)
T PF05621_consen 61 MPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRL 140 (302)
T ss_pred CCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHH
Confidence 45799999999999999999997642 3566665532211 1 1 0111 1222233444
Q ss_pred HhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCc--EEEEEecCCCCC--CCccccCCCCCcc
Q 003503 577 ARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKT--VFIIGATNRPDI--IDPALLRPGRLDQ 652 (815)
Q Consensus 577 a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~--v~vi~aTn~~~~--ld~allr~gRf~~ 652 (815)
.+...+.+|+|||++.++... .+-..++|+.+..+.+.-+ ++.+||-.-... -|+-+-+ ||+
T Consensus 141 lr~~~vrmLIIDE~H~lLaGs-----------~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~- 206 (302)
T PF05621_consen 141 LRRLGVRMLIIDEFHNLLAGS-----------YRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLAS--RFE- 206 (302)
T ss_pred HHHcCCcEEEeechHHHhccc-----------HHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHh--ccC-
Confidence 566777899999999986421 1112334444444433333 344444322222 3666666 997
Q ss_pred eeeccCCC-HHHHHHHHHHHhccCCCCC--cccH----HHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Q 003503 653 LIYIPLPD-EASRLQIFKACLRKSPISP--DVDL----SALARYTHGFSGADITEVCQRACKYAIREN 713 (815)
Q Consensus 653 ~i~~~~p~-~~~r~~Il~~~l~~~~~~~--~~~~----~~la~~t~g~sg~di~~l~~~a~~~a~~~~ 713 (815)
.+.+|.-. .++...++..+-+.+|+.. +..- ..|-..++|..| ++..+++.|+..|++..
T Consensus 207 ~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~sG 273 (302)
T PF05621_consen 207 PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELSRLLNAAAIAAIRSG 273 (302)
T ss_pred CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhcC
Confidence 44455432 2344556666666666542 2222 344456777665 89999999999999865
No 354
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.59 E-value=1.7e-07 Score=102.38 Aligned_cols=169 Identities=23% Similarity=0.292 Sum_probs=97.7
Q ss_pred CcceEEeCCCCCChhHHHHHHHHHhC---CcEEEEeccchhh-----hccCccH-------HHHHHHHHHHhhCCCeEEE
Q 003503 522 SKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLT-----MWFGESE-------ANVREIFDKARQSAPCVLF 586 (815)
Q Consensus 522 ~~gilL~GppGtGKT~lakala~~~~---~~~i~v~~~~l~~-----~~~g~se-------~~i~~~F~~a~~~~p~ilf 586 (815)
...|+|+|++||||+++|+++-.... .+|+.+++..+.. .++|... ......|..|. ...||
T Consensus 29 ~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~ 105 (326)
T PRK11608 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERAD---GGTLF 105 (326)
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccccccccCCcccccCCchhccC---CCeEE
Confidence 34699999999999999999987764 6899999887531 1222110 00112344443 34899
Q ss_pred EecchhhhhccCCCCCCCCchHHHHHHHHHhccccCC-----C----CCcEEEEEecCCC-------CCCCccccCCCCC
Q 003503 587 FDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN-----A----KKTVFIIGATNRP-------DIIDPALLRPGRL 650 (815)
Q Consensus 587 iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----~----~~~v~vi~aTn~~-------~~ld~allr~gRf 650 (815)
||||+.+.. .+...|+..++... . ..++.||+||+.. ..+.+.|.. ||
T Consensus 106 l~~i~~L~~--------------~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l 169 (326)
T PRK11608 106 LDELATAPM--------------LVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RL 169 (326)
T ss_pred eCChhhCCH--------------HHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hc
Confidence 999999843 23445555554321 1 1247888888763 235566665 77
Q ss_pred -cceeeccCCCH--HHHHHHHHHHhc----cCCCC--CcccHHHHHHH-cCCCC--HHHHHHHHHHHHHHH
Q 003503 651 -DQLIYIPLPDE--ASRLQIFKACLR----KSPIS--PDVDLSALARY-THGFS--GADITEVCQRACKYA 709 (815)
Q Consensus 651 -~~~i~~~~p~~--~~r~~Il~~~l~----~~~~~--~~~~~~~la~~-t~g~s--g~di~~l~~~a~~~a 709 (815)
...|.+|+... ++...+++.+++ +.+.. ..++-+.+... ...|. -++|++++++|+..+
T Consensus 170 ~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 170 AFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred CCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 34566665533 233445555543 22211 12332332221 23344 479999999988754
No 355
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.59 E-value=4.6e-07 Score=103.07 Aligned_cols=122 Identities=26% Similarity=0.392 Sum_probs=76.9
Q ss_pred CcceEEeCCCCCChhHHHHHHHHHhCCc--EEEEeccchhh--------------------------hccCccHHHHHHH
Q 003503 522 SKGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLT--------------------------MWFGESEANVREI 573 (815)
Q Consensus 522 ~~gilL~GppGtGKT~lakala~~~~~~--~i~v~~~~l~~--------------------------~~~g~se~~i~~~ 573 (815)
...++|+||||||||++++.+++.+... -..+....+.+ ..+|.....-...
T Consensus 210 G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~ 289 (506)
T PRK09862 210 GHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGE 289 (506)
T ss_pred CcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehhhH
Confidence 3569999999999999999999876421 01111111110 0112111111124
Q ss_pred HHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCC-----------CCCcEEEEEecCCCC----
Q 003503 574 FDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN-----------AKKTVFIIGATNRPD---- 638 (815)
Q Consensus 574 F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----------~~~~v~vi~aTn~~~---- 638 (815)
+..|... ++|+||++.+- ..+++.|++.|+.-. ...++.+|+|+|...
T Consensus 290 l~~A~gG---vLfLDEi~e~~--------------~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~ 352 (506)
T PRK09862 290 ISLAHNG---VLFLDELPEFE--------------RRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHY 352 (506)
T ss_pred hhhccCC---EEecCCchhCC--------------HHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceec
Confidence 5556554 99999997752 345666666664321 124689999999753
Q ss_pred -----------------CCCccccCCCCCcceeeccCCCHH
Q 003503 639 -----------------IIDPALLRPGRLDQLIYIPLPDEA 662 (815)
Q Consensus 639 -----------------~ld~allr~gRf~~~i~~~~p~~~ 662 (815)
.|..+++. |||..+.+++|+.+
T Consensus 353 ~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 353 QGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred CCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 36678887 99999999998764
No 356
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.56 E-value=1.6e-07 Score=91.76 Aligned_cols=134 Identities=25% Similarity=0.365 Sum_probs=85.6
Q ss_pred ccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCC-----------------------
Q 003503 492 GLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA----------------------- 548 (815)
Q Consensus 492 g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~----------------------- 548 (815)
|++.+.+.|...+.. -..+..+||+||+|+||+++|.++|..+-.
T Consensus 1 gq~~~~~~L~~~~~~------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHC------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHc------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 455566666555432 134556999999999999999999988621
Q ss_pred cEEEEeccchhhhccCccHHHHHHHHHHHhh----CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCC
Q 003503 549 NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNA 624 (815)
Q Consensus 549 ~~i~v~~~~l~~~~~g~se~~i~~~F~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~ 624 (815)
.++.++..+-.. .-....++++.+.... ....|++|||+|.+. ....|.||..|+. +
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~--------------~~a~NaLLK~LEe--p 129 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT--------------EEAQNALLKTLEE--P 129 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS---------------HHHHHHHHHHHHS--T
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh--------------HHHHHHHHHHhcC--C
Confidence 233333322100 0123566666666533 346799999999973 4567899999995 4
Q ss_pred CCcEEEEEecCCCCCCCccccCCCCCcceeeccCC
Q 003503 625 KKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 659 (815)
Q Consensus 625 ~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p 659 (815)
..++++|.+|+.++.|-|.+++ |+- .+.|++.
T Consensus 130 p~~~~fiL~t~~~~~il~TI~S--Rc~-~i~~~~l 161 (162)
T PF13177_consen 130 PENTYFILITNNPSKILPTIRS--RCQ-VIRFRPL 161 (162)
T ss_dssp TTTEEEEEEES-GGGS-HHHHT--TSE-EEEE---
T ss_pred CCCEEEEEEECChHHChHHHHh--hce-EEecCCC
Confidence 5678888888999999999998 873 6666553
No 357
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.56 E-value=2.2e-07 Score=108.03 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=28.1
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l~ 274 (815)
++.+.++..+.|.||+|+|||||+++|++.+.
T Consensus 21 sl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~ 52 (500)
T TIGR02633 21 DLEVRPGECVGLCGENGAGKSTLMKILSGVYP 52 (500)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34567889999999999999999999999764
No 358
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.55 E-value=1.1e-07 Score=94.86 Aligned_cols=46 Identities=30% Similarity=0.578 Sum_probs=35.3
Q ss_pred cccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 003503 214 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (815)
Q Consensus 214 ~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~ 274 (815)
|.+|.|++..+..+.-... | +.++||+||||||||++|+.+...++
T Consensus 2 f~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred hhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 6789999998888754433 2 46899999999999999999998875
No 359
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.55 E-value=2.6e-07 Score=108.11 Aligned_cols=197 Identities=22% Similarity=0.274 Sum_probs=111.0
Q ss_pred cccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHh---CCcEEEEeccchhhh
Q 003503 485 VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM 561 (815)
Q Consensus 485 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~ 561 (815)
..++++.|....-+.+.+.+... . .....|||+|++|||||++|++|...+ +.+|+.+++..+...
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~----------a-~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~ 261 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVV----------A-RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSET 261 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHH----------h-CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHH
Confidence 45667777766555554443321 1 223469999999999999999999886 468999999776321
Q ss_pred c-----cCccHHH-------HHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCC-----C
Q 003503 562 W-----FGESEAN-------VREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN-----A 624 (815)
Q Consensus 562 ~-----~g~se~~-------i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----~ 624 (815)
+ .|..... -...|..+. ...||||||+.+.. .+...|+..++.-. +
T Consensus 262 ~~~~~lfg~~~~~~~~~~~~~~g~~~~a~---~GtL~ldei~~L~~--------------~~Q~~Ll~~l~~~~~~~~~~ 324 (534)
T TIGR01817 262 LLESELFGHEKGAFTGAIAQRKGRFELAD---GGTLFLDEIGEISP--------------AFQAKLLRVLQEGEFERVGG 324 (534)
T ss_pred HHHHHHcCCCCCccCCCCcCCCCcccccC---CCeEEEechhhCCH--------------HHHHHHHHHHhcCcEEECCC
Confidence 1 1111000 001133332 35899999999843 24455555554321 1
Q ss_pred ----CCcEEEEEecCCCC-------CCCccccCCCCCc-ceeeccCCC--HHHHHHHHHHHhccC----CCCCccc---H
Q 003503 625 ----KKTVFIIGATNRPD-------IIDPALLRPGRLD-QLIYIPLPD--EASRLQIFKACLRKS----PISPDVD---L 683 (815)
Q Consensus 625 ----~~~v~vi~aTn~~~-------~ld~allr~gRf~-~~i~~~~p~--~~~r~~Il~~~l~~~----~~~~~~~---~ 683 (815)
.-++-+|+||+..- .+.+.|.. |+. ..|.+|+.. .++...+++.++++. +....++ +
T Consensus 325 ~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~ 402 (534)
T TIGR01817 325 NRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAI 402 (534)
T ss_pred CceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 12477888887641 12333333 443 356666554 244445666555432 2111222 3
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 003503 684 SALARYTHGFSGADITEVCQRACKYAIR 711 (815)
Q Consensus 684 ~~la~~t~g~sg~di~~l~~~a~~~a~~ 711 (815)
..|..+.=--+-++|++++++|+..+-.
T Consensus 403 ~~L~~~~WPGNvrEL~~v~~~a~~~~~~ 430 (534)
T TIGR01817 403 RVLMSCKWPGNVRELENCLERTATLSRS 430 (534)
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHhCCC
Confidence 3444433223458999999999876543
No 360
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=8.7e-07 Score=95.67 Aligned_cols=128 Identities=20% Similarity=0.321 Sum_probs=91.3
Q ss_pred CCcceEEeCCCCCChhHHHHHHHHHhCC------------------------cEEEEeccchhhhccCccHHHHHHHHHH
Q 003503 521 PSKGVLFYGPPGCGKTLLAKAIANECQA------------------------NFISVKGPELLTMWFGESEANVREIFDK 576 (815)
Q Consensus 521 ~~~gilL~GppGtGKT~lakala~~~~~------------------------~~i~v~~~~l~~~~~g~se~~i~~~F~~ 576 (815)
.+.++||+||.|+||+++|+++|..+-. .++.+...+ ++.+ .-..||++-+.
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~I--~id~iR~l~~~ 98 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NKDI--GVDQVREINEK 98 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CCCC--CHHHHHHHHHH
Confidence 4567999999999999999999987622 122232110 1111 23455554444
Q ss_pred ----HhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcc
Q 003503 577 ----ARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQ 652 (815)
Q Consensus 577 ----a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~ 652 (815)
+......|++||++|.+- ....|.||+.|+. +..++++|.+|+.++.|-|.+++ |+.
T Consensus 99 ~~~~~~~g~~KV~iI~~a~~m~--------------~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC~- 159 (325)
T PRK06871 99 VSQHAQQGGNKVVYIQGAERLT--------------EAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RCQ- 159 (325)
T ss_pred HhhccccCCceEEEEechhhhC--------------HHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hce-
Confidence 444556799999999983 3456889999985 55677888888889999999987 884
Q ss_pred eeeccCCCHHHHHHHHHHH
Q 003503 653 LIYIPLPDEASRLQIFKAC 671 (815)
Q Consensus 653 ~i~~~~p~~~~r~~Il~~~ 671 (815)
.+.|++|+.++..+.+...
T Consensus 160 ~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred EEeCCCCCHHHHHHHHHHH
Confidence 7899999998888777754
No 361
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.54 E-value=2.4e-07 Score=108.99 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=28.2
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l~ 274 (815)
++.+.++..+.|+||+|||||||+++|++.+.
T Consensus 27 s~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~ 58 (556)
T PRK11819 27 SLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK 58 (556)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34567899999999999999999999999863
No 362
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=8.3e-07 Score=94.88 Aligned_cols=31 Identities=29% Similarity=0.424 Sum_probs=27.0
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANET 273 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l 273 (815)
+|-|..++...|+||+|-|||||++.||...
T Consensus 284 ~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Ra 314 (807)
T KOG0066|consen 284 SLTIVYGRRYGLVGPNGMGKTTLLKHIAARA 314 (807)
T ss_pred ceEEEecceecccCCCCCchHHHHHHHHhhh
Confidence 4556778999999999999999999999763
No 363
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.53 E-value=3.2e-06 Score=90.45 Aligned_cols=63 Identities=38% Similarity=0.573 Sum_probs=43.6
Q ss_pred ccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CeEEEEechhh
Q 003503 215 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG--AFFFLINGPEI 285 (815)
Q Consensus 215 ~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~--~~~i~v~~~~l 285 (815)
+.++|+.++-+..--++++- +-+-..++++||.||||||||.||-++|+++| .+|+.++++++
T Consensus 24 ~GlVGQ~~AReAagiiv~mI--------k~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEi 88 (398)
T PF06068_consen 24 DGLVGQEKAREAAGIIVDMI--------KEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEI 88 (398)
T ss_dssp TTEES-HHHHHHHHHHHHHH--------HTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG
T ss_pred ccccChHHHHHHHHHHHHHH--------hcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEccccee
Confidence 46889888877665444431 11334689999999999999999999999997 56777777666
No 364
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.53 E-value=2.5e-07 Score=106.44 Aligned_cols=191 Identities=23% Similarity=0.375 Sum_probs=106.7
Q ss_pred ccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHH-----------hCCcEEEEe
Q 003503 486 SWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE-----------CQANFISVK 554 (815)
Q Consensus 486 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~-----------~~~~~i~v~ 554 (815)
.++++.|.....+.+.+.+.. +. .....|||+|++||||+++|++|-.. .+.||+.|+
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~~----------~A-~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTILL----------YA-RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred chhheeeCCHHHHHHHHHHHH----------Hh-CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 466777877665555554331 11 12346999999999999999999877 356899999
Q ss_pred ccchhhh-----ccCccHH--------HHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhcccc
Q 003503 555 GPELLTM-----WFGESEA--------NVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDG 621 (815)
Q Consensus 555 ~~~l~~~-----~~g~se~--------~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~ 621 (815)
+..+... ..|..+. .-..+|+.|.. ..||||||+.+.. .+...||..++.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~--------------~~Q~kLl~~L~e 348 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG---GTLFLDEIGEMPL--------------PLQTRLLRVLEE 348 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccCC---CEEEEcChHhCCH--------------HHHHHHHhhhhc
Confidence 9765321 1221110 11125555543 4899999999843 234455555543
Q ss_pred C-----CC----CCcEEEEEecCCCCCCCccccCCCCCcc-------eeeccCCCHHHH----HHHHHHHhcc----CCC
Q 003503 622 M-----NA----KKTVFIIGATNRPDIIDPALLRPGRLDQ-------LIYIPLPDEASR----LQIFKACLRK----SPI 677 (815)
Q Consensus 622 ~-----~~----~~~v~vi~aTn~~~~ld~allr~gRf~~-------~i~~~~p~~~~r----~~Il~~~l~~----~~~ 677 (815)
- .+ .-++-||+|||+. +...+ ..|+|.. .+.+..|...+| ..+++.++++ ...
T Consensus 349 ~~~~r~G~~~~~~~dvRiIaat~~~--L~~~v-~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~ 425 (538)
T PRK15424 349 KEVTRVGGHQPVPVDVRVISATHCD--LEEDV-RQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSA 425 (538)
T ss_pred CeEEecCCCceeccceEEEEecCCC--HHHHH-hcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCC
Confidence 1 11 1245789999864 22211 2233332 233444444444 3455555544 222
Q ss_pred CCcccH--------HHHHHHcCCCC--HHHHHHHHHHHHHHH
Q 003503 678 SPDVDL--------SALARYTHGFS--GADITEVCQRACKYA 709 (815)
Q Consensus 678 ~~~~~~--------~~la~~t~g~s--g~di~~l~~~a~~~a 709 (815)
.-..+. ..|. ...|. -++|++++++++..+
T Consensus 426 ~~~~~a~~~~~~a~~~L~--~y~WPGNvREL~nvier~~i~~ 465 (538)
T PRK15424 426 PFSAALRQGLQQCETLLL--HYDWPGNVRELRNLMERLALFL 465 (538)
T ss_pred CCCHHHHHhhHHHHHHHH--hCCCCchHHHHHHHHHHHHHhc
Confidence 211111 1222 23344 479999999988753
No 365
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.53 E-value=1.4e-07 Score=109.52 Aligned_cols=31 Identities=19% Similarity=0.345 Sum_probs=27.4
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANET 273 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l 273 (815)
++.+.++..+.|.||+|+|||||+++|++.+
T Consensus 24 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 54 (501)
T PRK11288 24 SFDCRAGQVHALMGENGAGKSTLLKILSGNY 54 (501)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456788999999999999999999999875
No 366
>PRK13409 putative ATPase RIL; Provisional
Probab=98.53 E-value=2e-07 Score=109.55 Aligned_cols=29 Identities=31% Similarity=0.328 Sum_probs=25.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 003503 246 VKPPKGILLYGPPGSGKTLIARAVANETG 274 (815)
Q Consensus 246 i~~~~~VLL~GppGtGKTtLar~la~~l~ 274 (815)
+.++..+.|+||+|+|||||++.|++.+.
T Consensus 96 i~~Gev~gLvG~NGaGKSTLlkiL~G~l~ 124 (590)
T PRK13409 96 PKEGKVTGILGPNGIGKTTAVKILSGELI 124 (590)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 46788899999999999999999999764
No 367
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.52 E-value=4.8e-07 Score=107.32 Aligned_cols=156 Identities=24% Similarity=0.359 Sum_probs=94.6
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC------------------
Q 003503 213 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG------------------ 274 (815)
Q Consensus 213 ~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~------------------ 274 (815)
.|.+|.|++..+..+.-....| ...+|||.|++|||||++|++|++.++
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 4778999998876664333221 124699999999999999999999883
Q ss_pred -----------------CeEEEEechhhhhhhhchh--HHHHH---HHHHHH--HhcCCcEEEecccccccCCCCCchhH
Q 003503 275 -----------------AFFFLINGPEIMSKLAGES--ESNLR---KAFEEA--EKNAPSIIFIDELDSIAPKREKTHGE 330 (815)
Q Consensus 275 -----------------~~~i~v~~~~l~~~~~g~~--~~~l~---~vf~~a--~~~~p~il~iDEid~l~~~~~~~~~~ 330 (815)
.+|+.+.+........|.. ...+. ..++.. ......+|||||++.+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~-------- 140 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD-------- 140 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH--------
Confidence 2344443322111111211 00000 001100 011235999999998753
Q ss_pred HHHHHHHHHHHhhhcc-----------cCCCcEEEEEecCCCC-CCCHHhhccCCcceEEEcCCCC-HHHHHHHHHH
Q 003503 331 VERRIVSQLLTLMDGL-----------KSRAHVIVMGATNRPN-SIDPALRRFGRFDREIDIGVPD-EVGRLEILRI 394 (815)
Q Consensus 331 ~~~~v~~~Ll~~ld~~-----------~~~~~vivi~atn~~~-~ld~al~r~~rf~~~i~i~~p~-~~~R~~il~~ 394 (815)
.+...|+..|+.- ....++.+|+++|..+ .+.++|.. ||...+.++.+. .+++.++++.
T Consensus 141 ---~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 141 ---HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred ---HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHH
Confidence 3556677777532 1124588888888643 57788877 888888887764 5667777654
No 368
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.51 E-value=7.7e-07 Score=97.39 Aligned_cols=147 Identities=22% Similarity=0.314 Sum_probs=93.5
Q ss_pred cccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC---------------------
Q 003503 216 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG--------------------- 274 (815)
Q Consensus 216 ~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~--------------------- 274 (815)
++.|.+.....+.......- .-+..+||+||||+|||++|.++|+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~-----------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG-----------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhcC-----------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 34555566666655544211 1122599999999999999999999886
Q ss_pred ---CeEEEEechhhhhhhhchhHHHHHHHHHHHHh----cCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhccc
Q 003503 275 ---AFFFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK 347 (815)
Q Consensus 275 ---~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~ 347 (815)
..++.++.++..... .....++.+.+.... ...-+++|||+|.+.. ...+.|+..+....
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~-----------~A~nallk~lEep~ 137 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE-----------DAANALLKTLEEPP 137 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH-----------HHHHHHHHHhccCC
Confidence 456777765543221 123445555444322 3356999999998854 34466777776443
Q ss_pred CCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHH
Q 003503 348 SRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEI 391 (815)
Q Consensus 348 ~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~i 391 (815)
.+..++.+||.++.+-+.+++ |. ..+.+.+|....+...
T Consensus 138 --~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~ 176 (325)
T COG0470 138 --KNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAW 176 (325)
T ss_pred --CCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHH
Confidence 356666788899999888887 54 4567776554444333
No 369
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.51 E-value=5.2e-07 Score=107.40 Aligned_cols=46 Identities=22% Similarity=0.350 Sum_probs=34.4
Q ss_pred hhhhhcCCCCcc--eEEeCCCCCChhHHHHHHHHHhC--CcEEEEeccch
Q 003503 513 KFEKFGMSPSKG--VLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPEL 558 (815)
Q Consensus 513 ~~~~~~~~~~~g--ilL~GppGtGKT~lakala~~~~--~~~i~v~~~~l 558 (815)
.++.+++....| +.|.||+|||||||+++|++... ..-|.+++.++
T Consensus 339 ~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i 388 (623)
T PRK10261 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRI 388 (623)
T ss_pred EEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEEC
Confidence 345556555555 88999999999999999999874 34566666554
No 370
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.51 E-value=8.5e-07 Score=96.69 Aligned_cols=147 Identities=20% Similarity=0.284 Sum_probs=98.3
Q ss_pred CCCcceEEeCCCCCChhHHHHHHHHHhCC------------------------cEEEEeccchhhhccCccHHHHHH---
Q 003503 520 SPSKGVLFYGPPGCGKTLLAKAIANECQA------------------------NFISVKGPELLTMWFGESEANVRE--- 572 (815)
Q Consensus 520 ~~~~gilL~GppGtGKT~lakala~~~~~------------------------~~i~v~~~~l~~~~~g~se~~i~~--- 572 (815)
+.+..+||+||+|+||+++|.++|..+-. .++.+....- ... -+-..||+
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~~--I~idqiR~l~~ 98 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-KSS--LGVDAVREVTE 98 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-ccc--CCHHHHHHHHH
Confidence 44567999999999999999999988621 1222321100 000 01233444
Q ss_pred -HHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCc
Q 003503 573 -IFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLD 651 (815)
Q Consensus 573 -~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~ 651 (815)
+...+......|++||++|.+- ...-|.||+.|+. +..+.++|..|+.|+.|-|-+++ |+.
T Consensus 99 ~~~~~~~~g~~kV~iI~~ae~m~--------------~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RCq 160 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALLT--------------DAAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RCR 160 (334)
T ss_pred HHhhccccCCceEEEEcchHhhC--------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--ccc
Confidence 4444555566899999999983 3456889999985 55678888888889999999998 887
Q ss_pred ceeeccCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCC
Q 003503 652 QLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHG 692 (815)
Q Consensus 652 ~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g 692 (815)
.+.|++|+.++..+.+... .+++. .+...++....|
T Consensus 161 -~~~~~~~~~~~~~~~L~~~---~~~~~-~~a~~~~~la~G 196 (334)
T PRK07993 161 -LHYLAPPPEQYALTWLSRE---VTMSQ-DALLAALRLSAG 196 (334)
T ss_pred -cccCCCCCHHHHHHHHHHc---cCCCH-HHHHHHHHHcCC
Confidence 6899999998877777543 23332 223445555555
No 371
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.49 E-value=2.9e-07 Score=106.02 Aligned_cols=195 Identities=20% Similarity=0.316 Sum_probs=107.3
Q ss_pred cccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHh---CCcEEEEeccchhhh
Q 003503 485 VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM 561 (815)
Q Consensus 485 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~ 561 (815)
..|+++.|.....+.+.+.+.. +. .....|||+|++||||+++|++|-..+ +.||+.+++..+-..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~----------~A-~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRL----------YA-RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHH----------Hh-CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 4567777777665555544321 11 123469999999999999999998775 468999999765321
Q ss_pred -----ccCccH--------HHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccC-----C
Q 003503 562 -----WFGESE--------ANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGM-----N 623 (815)
Q Consensus 562 -----~~g~se--------~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~-----~ 623 (815)
..|..+ ..-..+|+.|.. ..||||||+.|.. .+...|+..++.- .
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~--------------~~Q~~Ll~~L~~~~~~r~g 340 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEMPL--------------PLQTRLLRVLEEREVVRVG 340 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcCC---ceEEecChHhCCH--------------HHHHHHHHHHhcCcEEecC
Confidence 112111 011234555543 4899999999843 2344455444321 1
Q ss_pred CC----CcEEEEEecCCCC--CCCccccCC---CCCc-ceeeccCCCH--HHHHHHHHHHhccC----CCCCccc-HHH-
Q 003503 624 AK----KTVFIIGATNRPD--IIDPALLRP---GRLD-QLIYIPLPDE--ASRLQIFKACLRKS----PISPDVD-LSA- 685 (815)
Q Consensus 624 ~~----~~v~vi~aTn~~~--~ld~allr~---gRf~-~~i~~~~p~~--~~r~~Il~~~l~~~----~~~~~~~-~~~- 685 (815)
+. -++-||+|||+.- .+....+|+ -|+. ..|++|+.-. ++...+++.++++. .+.-+.+ +..
T Consensus 341 ~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~ 420 (526)
T TIGR02329 341 GTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVL 420 (526)
T ss_pred CCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHh
Confidence 11 1357888887642 222222221 1443 3455555433 23444555555432 2211111 111
Q ss_pred ------HHHHcCCCCH--HHHHHHHHHHHHHH
Q 003503 686 ------LARYTHGFSG--ADITEVCQRACKYA 709 (815)
Q Consensus 686 ------la~~t~g~sg--~di~~l~~~a~~~a 709 (815)
|.. ..|.| ++|++++.+++..+
T Consensus 421 ~~~~~~L~~--y~WPGNvrEL~nvier~~i~~ 450 (526)
T TIGR02329 421 AGVADPLQR--YPWPGNVRELRNLVERLALEL 450 (526)
T ss_pred HHHHHHHHh--CCCCchHHHHHHHHHHHHHhc
Confidence 222 34444 79999999988754
No 372
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.49 E-value=3.7e-07 Score=107.32 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=27.6
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANET 273 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l 273 (815)
++.+.++..+.|+||+|+|||||+++|++..
T Consensus 25 s~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~ 55 (552)
T TIGR03719 25 SLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD 55 (552)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456788899999999999999999999876
No 373
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.49 E-value=4.9e-07 Score=108.21 Aligned_cols=168 Identities=23% Similarity=0.322 Sum_probs=92.9
Q ss_pred CcceEEeCCCCCChhHHHHHHHHHhC---CcEEEEeccchh-----hhccCcc----HHHHHHHHHHHhhCCCeEEEEec
Q 003503 522 SKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELL-----TMWFGES----EANVREIFDKARQSAPCVLFFDE 589 (815)
Q Consensus 522 ~~gilL~GppGtGKT~lakala~~~~---~~~i~v~~~~l~-----~~~~g~s----e~~i~~~F~~a~~~~p~ilfiDE 589 (815)
...|||+|++||||+++|+++...+. .+|+.|++..+. +.++|.. .......|+.|. ...|||||
T Consensus 348 ~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~~~~~~~~~~g~~~~a~---~GtL~lde 424 (638)
T PRK11388 348 SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDRTDSENGRLSKFELAH---GGTLFLEK 424 (638)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCCCcCccCCCCCceeECC---CCEEEEcC
Confidence 34599999999999999999998764 689999987652 1222311 100011233332 35899999
Q ss_pred chhhhhccCCCCCCCCchHHHHHHHHHhccccCC-----CC----CcEEEEEecCCCCCCCccccCCCCCcc-------e
Q 003503 590 LDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN-----AK----KTVFIIGATNRPDIIDPALLRPGRLDQ-------L 653 (815)
Q Consensus 590 id~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----~~----~~v~vi~aTn~~~~ld~allr~gRf~~-------~ 653 (815)
|+.+.. .+...|+..++.-. .. -++-||+|||..- . .+...|+|.. .
T Consensus 425 i~~l~~--------------~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l--~-~~~~~~~f~~dL~~~l~~ 487 (638)
T PRK11388 425 VEYLSP--------------ELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADL--A-MLVEQNRFSRQLYYALHA 487 (638)
T ss_pred hhhCCH--------------HHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCH--H-HHHhcCCChHHHhhhhce
Confidence 999843 23444555444221 11 1577999998642 1 1122233311 2
Q ss_pred eeccCCCHHHH----HHHHHHHhccC----CCCCccc---HHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 003503 654 IYIPLPDEASR----LQIFKACLRKS----PISPDVD---LSALARYTHGFSGADITEVCQRACKYA 709 (815)
Q Consensus 654 i~~~~p~~~~r----~~Il~~~l~~~----~~~~~~~---~~~la~~t~g~sg~di~~l~~~a~~~a 709 (815)
+.+..|...+| ..+++.++++. +....++ +..|..+.=--+-++|+++++.|+..+
T Consensus 488 ~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~~ 554 (638)
T PRK11388 488 FEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSS 554 (638)
T ss_pred eEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHHHhC
Confidence 33444444444 34455554332 1111122 334444332234589999999988754
No 374
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.49 E-value=2.6e-06 Score=92.71 Aligned_cols=128 Identities=17% Similarity=0.310 Sum_probs=88.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCe------------------------EEEEechhhhhhhhchhHHHHHHHHHHH
Q 003503 249 PKGILLYGPPGSGKTLIARAVANETGAF------------------------FFLINGPEIMSKLAGESESNLRKAFEEA 304 (815)
Q Consensus 249 ~~~VLL~GppGtGKTtLar~la~~l~~~------------------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a 304 (815)
+..+||+||+|+|||++|+.+|+.+... ++.+....- + ..-.-..+|.+.+.+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~--~~i~id~iR~l~~~~ 98 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-D--KTIKVDQVRELVSFV 98 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-C--CCCCHHHHHHHHHHH
Confidence 5579999999999999999999887431 122211000 0 011234566655544
Q ss_pred H----hcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEc
Q 003503 305 E----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDI 380 (815)
Q Consensus 305 ~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i 380 (815)
. .....|++||++|.+.. ...+.|+..+++.. .++++|.+|+.++.+.|.+++ |+ ..+.+
T Consensus 99 ~~~~~~~~~kv~iI~~a~~m~~-----------~aaNaLLK~LEEPp--~~~~fiL~t~~~~~ll~TI~S--Rc-~~~~~ 162 (328)
T PRK05707 99 VQTAQLGGRKVVLIEPAEAMNR-----------NAANALLKSLEEPS--GDTVLLLISHQPSRLLPTIKS--RC-QQQAC 162 (328)
T ss_pred hhccccCCCeEEEECChhhCCH-----------HHHHHHHHHHhCCC--CCeEEEEEECChhhCcHHHHh--hc-eeeeC
Confidence 3 34456889999998752 35577888887643 467777889999999999998 66 44899
Q ss_pred CCCCHHHHHHHHHHH
Q 003503 381 GVPDEVGRLEILRIH 395 (815)
Q Consensus 381 ~~p~~~~R~~il~~~ 395 (815)
++|+.++-.+.|...
T Consensus 163 ~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 163 PLPSNEESLQWLQQA 177 (328)
T ss_pred CCcCHHHHHHHHHHh
Confidence 999998887777644
No 375
>PRK04132 replication factor C small subunit; Provisional
Probab=98.48 E-value=2.1e-06 Score=102.72 Aligned_cols=154 Identities=19% Similarity=0.204 Sum_probs=109.6
Q ss_pred CCceEEEEC--CCCCcHHHHHHHHHHHh-----CCeEEEEechhhhhhhhchhHHHHHHHHHHHHhcC------CcEEEe
Q 003503 248 PPKGILLYG--PPGSGKTLIARAVANET-----GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA------PSIIFI 314 (815)
Q Consensus 248 ~~~~VLL~G--ppGtGKTtLar~la~~l-----~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~------p~il~i 314 (815)
|+-+-++.| |++.||||+|++||+++ +..++.+|+++-.+ -..++.++..+.... ..|+||
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvII 636 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFL 636 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEE
Confidence 444567779 99999999999999997 45789999876422 124555555433222 259999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHH
Q 003503 315 DELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRI 394 (815)
Q Consensus 315 DEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~ 394 (815)
||+|.+.. ...+.|+..|+... ..+.+|.+||+++.+.+++++ |+ ..+.+..|+.++-...|+.
T Consensus 637 DEaD~Lt~-----------~AQnALLk~lEep~--~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~ 700 (846)
T PRK04132 637 DEADALTQ-----------DAQQALRRTMEMFS--SNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRY 700 (846)
T ss_pred ECcccCCH-----------HHHHHHHHHhhCCC--CCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHH
Confidence 99999852 24567888887543 356777889999999999997 65 6789999998888877776
Q ss_pred HhcCCccc-cchhhhHHHhhcCCCcHHHHH
Q 003503 395 HTKNMKLA-EDVDLERVAKDTHGYVGSDLA 423 (815)
Q Consensus 395 ~~~~~~l~-~~~~l~~la~~t~g~~~~dl~ 423 (815)
.+....+. ++..+..++..+.|-...-+.
T Consensus 701 I~~~Egi~i~~e~L~~Ia~~s~GDlR~AIn 730 (846)
T PRK04132 701 IAENEGLELTEEGLQAILYIAEGDMRRAIN 730 (846)
T ss_pred HHHhcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 65543332 344677888888876554443
No 376
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.47 E-value=2.3e-07 Score=103.16 Aligned_cols=194 Identities=26% Similarity=0.392 Sum_probs=111.9
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhC---CcEEEEeccchh-
Q 003503 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELL- 559 (815)
Q Consensus 484 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~---~~~i~v~~~~l~- 559 (815)
..+|++|.|-...-..+.+.+.. .......|||+|.+||||..+|+++-+.+. .|||.++|..+-
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr-----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKR-----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHh-----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 35677877766554444333221 223345699999999999999999999874 689999986543
Q ss_pred --------h----hccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhcccc-----C
Q 003503 560 --------T----MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDG-----M 622 (815)
Q Consensus 560 --------~----~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~-----~ 622 (815)
+ -|.|....--.-+|+.|... -||+|||..+. ..+...||.-|.. +
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgemp--------------l~LQaKLLRVLQEkei~rv 372 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEMP--------------LPLQAKLLRVLQEKEIERV 372 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccCC--------------HHHHHHHHHHHhhceEEec
Confidence 1 12333322233577777665 79999998873 2344555554442 2
Q ss_pred CCC----CcEEEEEecCCCCCCCccccCCCCCcc-------eeeccCCCHHHHHH--------HHHHHhccCC-----CC
Q 003503 623 NAK----KTVFIIGATNRPDIIDPALLRPGRLDQ-------LIYIPLPDEASRLQ--------IFKACLRKSP-----IS 678 (815)
Q Consensus 623 ~~~----~~v~vi~aTn~~~~ld~allr~gRf~~-------~i~~~~p~~~~r~~--------Il~~~l~~~~-----~~ 678 (815)
.+. -+|-||+|||+. +..++-. |||-. ++.+..|-..+|.+ +++.+.++++ ++
T Consensus 373 G~t~~~~vDVRIIAATN~n--L~~~i~~-G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls 449 (560)
T COG3829 373 GGTKPIPVDVRIIAATNRN--LEKMIAE-GTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLS 449 (560)
T ss_pred CCCCceeeEEEEEeccCcC--HHHHHhc-CcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCC
Confidence 222 268999999973 3333322 44432 33344454444432 2333333332 22
Q ss_pred CcccHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 003503 679 PDVDLSALARYTHGFSGADITEVCQRACKYA 709 (815)
Q Consensus 679 ~~~~~~~la~~t~g~sg~di~~l~~~a~~~a 709 (815)
++ -+..|.++.=--+-++|+|++.++...+
T Consensus 450 ~~-a~~~L~~y~WPGNVRELeNviER~v~~~ 479 (560)
T COG3829 450 PD-ALALLLRYDWPGNVRELENVIERAVNLV 479 (560)
T ss_pred HH-HHHHHHhCCCCchHHHHHHHHHHHHhcc
Confidence 22 1333333221124489999999998744
No 377
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.47 E-value=2.6e-06 Score=87.00 Aligned_cols=40 Identities=43% Similarity=0.692 Sum_probs=32.7
Q ss_pred CCcceEEeCCCCCChhHHHHHHHHHhC--CcEEEEeccchhh
Q 003503 521 PSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLT 560 (815)
Q Consensus 521 ~~~gilL~GppGtGKT~lakala~~~~--~~~i~v~~~~l~~ 560 (815)
..+.+||.||||||||.||-+++.+++ .||..+.++++.+
T Consensus 63 aGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS 104 (456)
T KOG1942|consen 63 AGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYS 104 (456)
T ss_pred cCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhh
Confidence 356799999999999999999999986 4676666666653
No 378
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=2.8e-06 Score=91.98 Aligned_cols=179 Identities=13% Similarity=0.202 Sum_probs=114.7
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe----------------
Q 003503 213 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------------- 276 (815)
Q Consensus 213 ~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~---------------- 276 (815)
.|++|.|++..++.+++.+... .-+..+||+||+|+||+++|+++|+.+-..
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 4789999999999999888641 224689999999999999999999886221
Q ss_pred --EEEEech------hhhhhh---hc--------hhHHHHHHHHHHHH----hcCCcEEEecccccccCCCCCchhHHHH
Q 003503 277 --FFLINGP------EIMSKL---AG--------ESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVER 333 (815)
Q Consensus 277 --~i~v~~~------~l~~~~---~g--------~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~ 333 (815)
++.+... .+...+ .| -.-..++.+.+.+. .....|++||++|.+. .
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~-----------~ 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN-----------E 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC-----------H
Confidence 1222110 000000 00 01124555544433 2345799999998774 2
Q ss_pred HHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccccchhhhHHHhh
Q 003503 334 RIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKD 413 (815)
Q Consensus 334 ~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~ 413 (815)
...+.|+..++... + .++|..++.++.+-+.+++ |. ..+.+..++.++-.++|......-.. +.+...++..
T Consensus 139 ~aaNaLLK~LEEPp-~--~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~~~ 210 (314)
T PRK07399 139 AAANALLKTLEEPG-N--GTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELLAL 210 (314)
T ss_pred HHHHHHHHHHhCCC-C--CeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHHHHH
Confidence 34577888887654 3 3455567788999999998 65 66899999999888888754321111 1123556666
Q ss_pred cCCCcHHHH
Q 003503 414 THGYVGSDL 422 (815)
Q Consensus 414 t~g~~~~dl 422 (815)
..|-.+.-+
T Consensus 211 a~Gs~~~al 219 (314)
T PRK07399 211 AQGSPGAAI 219 (314)
T ss_pred cCCCHHHHH
Confidence 666544433
No 379
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.46 E-value=6.1e-06 Score=89.90 Aligned_cols=179 Identities=25% Similarity=0.329 Sum_probs=116.1
Q ss_pred CCCcceEEeCCCCCChhHHHHHHHHHh----CC-cEEEEeccchh----------hhc----c-CccHHHHHHHHHHHhh
Q 003503 520 SPSKGVLFYGPPGCGKTLLAKAIANEC----QA-NFISVKGPELL----------TMW----F-GESEANVREIFDKARQ 579 (815)
Q Consensus 520 ~~~~gilL~GppGtGKT~lakala~~~----~~-~~i~v~~~~l~----------~~~----~-g~se~~i~~~F~~a~~ 579 (815)
..+.++.+.|.||||||.+..-+-... .. ..+++++..+- +.+ + +.+++.....|+.-..
T Consensus 173 ~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~ 252 (529)
T KOG2227|consen 173 NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTK 252 (529)
T ss_pred ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh
Confidence 445569999999999999888554333 22 34777775432 112 1 1223344455544433
Q ss_pred C--CCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCCCCccccC----CCCCcce
Q 003503 580 S--APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLR----PGRLDQL 653 (815)
Q Consensus 580 ~--~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr----~gRf~~~ 653 (815)
+ .+-++++||+|.|+.+. ++++.++ -++..+ ...++++||-.|..|+-|..|.| -+--..+
T Consensus 253 q~k~~~llVlDEmD~L~tr~-----------~~vLy~l-Fewp~l-p~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~ 319 (529)
T KOG2227|consen 253 QSKFMLLLVLDEMDHLITRS-----------QTVLYTL-FEWPKL-PNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKL 319 (529)
T ss_pred cccceEEEEechhhHHhhcc-----------cceeeee-hhcccC-CcceeeeeeehhhhhHHHHHhhhhhhccCCCCce
Confidence 2 36799999999998432 1122222 223332 35678999999998887766553 1233478
Q ss_pred eeccCCCHHHHHHHHHHHhccCCCCCcc--cHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHH
Q 003503 654 IYIPLPDEASRLQIFKACLRKSPISPDV--DLSALARYTHGFSGADIT---EVCQRACKYAIRE 712 (815)
Q Consensus 654 i~~~~p~~~~r~~Il~~~l~~~~~~~~~--~~~~la~~t~g~sg~di~---~l~~~a~~~a~~~ 712 (815)
+.|++++.++..+||+..+...+..... -++..|+...+.|| |++ .+|+.|...|-.+
T Consensus 320 l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlRkaLdv~R~aiEI~E~e 382 (529)
T KOG2227|consen 320 LVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLRKALDVCRRAIEIAEIE 382 (529)
T ss_pred eeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887655433 36778888888887 444 4677776655443
No 380
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.45 E-value=6.4e-06 Score=87.67 Aligned_cols=173 Identities=17% Similarity=0.290 Sum_probs=96.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCC-eEE--E-Eec----hhhhh---hhhc-----hh-HHHHHHH---H-HHHHhcC
Q 003503 250 KGILLYGPPGSGKTLIARAVANETGA-FFF--L-ING----PEIMS---KLAG-----ES-ESNLRKA---F-EEAEKNA 308 (815)
Q Consensus 250 ~~VLL~GppGtGKTtLar~la~~l~~-~~i--~-v~~----~~l~~---~~~g-----~~-~~~l~~v---f-~~a~~~~ 308 (815)
..++|+||+|+||||+++.+++.+.. .+. . ++. .++.. ...| .. ...++.+ + .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 45899999999999999999998763 221 1 111 11111 0011 10 1111222 2 2233556
Q ss_pred CcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhccc-CCCcE--EEEEecCCCCCC-C---HHhhccCCcceEEEcC
Q 003503 309 PSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK-SRAHV--IVMGATNRPNSI-D---PALRRFGRFDREIDIG 381 (815)
Q Consensus 309 p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-~~~~v--ivi~atn~~~~l-d---~al~r~~rf~~~i~i~ 381 (815)
+.++++||++.+.+. ....|..+.+... ....+ ++++.+.-.+.+ + ..+.+ |+...++++
T Consensus 124 ~~vliiDe~~~l~~~-----------~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~~l~ 190 (269)
T TIGR03015 124 RALLVVDEAQNLTPE-----------LLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASCHLG 190 (269)
T ss_pred CeEEEEECcccCCHH-----------HHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeeeeCC
Confidence 779999999876421 1222222222111 12222 232322211111 1 12333 666788999
Q ss_pred CCCHHHHHHHHHHHhcCCc-----cccchhhhHHHhhcCCCcHHHHHHHHHHHHHHhHHh
Q 003503 382 VPDEVGRLEILRIHTKNMK-----LAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIRE 436 (815)
Q Consensus 382 ~p~~~~R~~il~~~~~~~~-----l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 436 (815)
..+.++..+++...++... ...+..+..+...+.|+... +..+|..+...+...
T Consensus 191 ~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~-i~~l~~~~~~~a~~~ 249 (269)
T TIGR03015 191 PLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRL-INILCDRLLLSAFLE 249 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccH-HHHHHHHHHHHHHHc
Confidence 9999998888877664332 12345678889999998654 888888887766554
No 381
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.44 E-value=3.4e-07 Score=100.41 Aligned_cols=195 Identities=24% Similarity=0.335 Sum_probs=111.6
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhC---CcEEEEeccchhh
Q 003503 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLT 560 (815)
Q Consensus 484 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~---~~~i~v~~~~l~~ 560 (815)
......|+|......++.+.|..- ......|||.|.+||||..+|++|-..+. .||+.+||+.+-.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~V-----------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVV-----------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHH-----------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 345566777776665555544321 12234699999999999999999998874 6899999976532
Q ss_pred ---------hccCccHHHH---HHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHh-----ccccCC
Q 003503 561 ---------MWFGESEANV---REIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLT-----EMDGMN 623 (815)
Q Consensus 561 ---------~~~g~se~~i---~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~-----~ld~~~ 623 (815)
.--|.....+ +--|+.|.+. -||+|||..+.. .+...||. +++.+.
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdGG---TLFLDEIGelPL--------------~lQaKLLRvLQegEieRvG 350 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADGG---TLFLDEIGELPL--------------ALQAKLLRVLQEGEIERVG 350 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCCC---eEechhhccCCH--------------HHHHHHHHHHhhcceeecC
Confidence 1111111111 1235555544 899999977632 23333443 344443
Q ss_pred CCC----cEEEEEecCCCCCCCccccCCCCCcceee-------ccCCCHHHHH--------HHHHHHhccCCCC-Cccc-
Q 003503 624 AKK----TVFIIGATNRPDIIDPALLRPGRLDQLIY-------IPLPDEASRL--------QIFKACLRKSPIS-PDVD- 682 (815)
Q Consensus 624 ~~~----~v~vi~aTn~~~~ld~allr~gRf~~~i~-------~~~p~~~~r~--------~Il~~~l~~~~~~-~~~~- 682 (815)
+.+ .|-||||||+ +|..++.. |+|-.-+| +..|-..+|. .+++.+-++.+.. ...+
T Consensus 351 ~~r~ikVDVRiIAATNR--DL~~~V~~-G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~ 427 (550)
T COG3604 351 GDRTIKVDVRVIAATNR--DLEEMVRD-GEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSA 427 (550)
T ss_pred CCceeEEEEEEEeccch--hHHHHHHc-CcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCH
Confidence 332 5889999997 44455443 66643322 2234333332 2233333334431 1122
Q ss_pred --HHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 003503 683 --LSALARYTHGFSGADITEVCQRACKYA 709 (815)
Q Consensus 683 --~~~la~~t~g~sg~di~~l~~~a~~~a 709 (815)
++.|.++.---+-+++++++++|+..|
T Consensus 428 ~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 428 EALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 333433332234589999999999988
No 382
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=1.7e-06 Score=93.33 Aligned_cols=154 Identities=22% Similarity=0.252 Sum_probs=98.9
Q ss_pred CCCcceEEeCCCCCChhHHHHHHHHHhCC---------------------cEEEEe-ccchhhh-c-cCccHHHHHHHHH
Q 003503 520 SPSKGVLFYGPPGCGKTLLAKAIANECQA---------------------NFISVK-GPELLTM-W-FGESEANVREIFD 575 (815)
Q Consensus 520 ~~~~gilL~GppGtGKT~lakala~~~~~---------------------~~i~v~-~~~l~~~-~-~g~se~~i~~~F~ 575 (815)
+.+..+||+||+|+||+++|.++|..+-. .++.+. .++-.+. . ..-.-..||++-+
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 34557999999999999999999977521 122221 1110000 0 0001335666665
Q ss_pred HHhh----CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCc
Q 003503 576 KARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLD 651 (815)
Q Consensus 576 ~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~ 651 (815)
.+.. ....|++||++|.+. ....|.||+.|+. +..++++|.+|+.++.|-|.+++ |+.
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m~--------------~~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--RCq 165 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAIN--------------RAACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--RCQ 165 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhhC--------------HHHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--hhe
Confidence 5433 334799999999983 3356888888885 44567777788889999999987 885
Q ss_pred ceeeccCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcCCCCHHH
Q 003503 652 QLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGAD 697 (815)
Q Consensus 652 ~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~d 697 (815)
.+.|++|+.++..+.+... +++. .+...++....|--+.-
T Consensus 166 -~i~~~~~~~~~~~~~L~~~----~~~~-~~a~~~~~l~~G~p~~A 205 (319)
T PRK08769 166 -RLEFKLPPAHEALAWLLAQ----GVSE-RAAQEALDAARGHPGLA 205 (319)
T ss_pred -EeeCCCcCHHHHHHHHHHc----CCCh-HHHHHHHHHcCCCHHHH
Confidence 7889999998877777642 2322 22345566666544433
No 383
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.43 E-value=3.9e-07 Score=89.39 Aligned_cols=113 Identities=29% Similarity=0.501 Sum_probs=70.7
Q ss_pred cceEEeCCCCCChhHHHHHHHHHhC---CcEEEEeccchhhh-----ccCccH-------HHHHHHHHHHhhCCCeEEEE
Q 003503 523 KGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTM-----WFGESE-------ANVREIFDKARQSAPCVLFF 587 (815)
Q Consensus 523 ~gilL~GppGtGKT~lakala~~~~---~~~i~v~~~~l~~~-----~~g~se-------~~i~~~F~~a~~~~p~ilfi 587 (815)
..|||+|++||||+++|++|-..+. .||+.|+++.+... .+|... ..-.-+|+.|... .|||
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~G---tL~L 99 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANGG---TLFL 99 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTS---EEEE
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccce---EEee
Confidence 5699999999999999999998764 68999999766322 222211 1122567777665 9999
Q ss_pred ecchhhhhccCCCCCCCCchHHHHHHHHHhccccC-----CCC----CcEEEEEecCCCCCCCccccCCCCCcceee
Q 003503 588 DELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGM-----NAK----KTVFIIGATNRPDIIDPALLRPGRLDQLIY 655 (815)
Q Consensus 588 DEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~-----~~~----~~v~vi~aTn~~~~ld~allr~gRf~~~i~ 655 (815)
|||+.|.. .+...|+..|+.- ... -++-||+||+. .|...+.. |+|..-+|
T Consensus 100 d~I~~L~~--------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~--~l~~~v~~-g~fr~dLy 159 (168)
T PF00158_consen 100 DEIEDLPP--------------ELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK--DLEELVEQ-GRFREDLY 159 (168)
T ss_dssp ETGGGS-H--------------HHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS---HHHHHHT-TSS-HHHH
T ss_pred cchhhhHH--------------HHHHHHHHHHhhchhccccccccccccceEEeecCc--CHHHHHHc-CCChHHHH
Confidence 99999843 3455566555532 111 26889999995 34444433 67754333
No 384
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.43 E-value=5.3e-07 Score=91.55 Aligned_cols=32 Identities=25% Similarity=0.475 Sum_probs=28.1
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l~ 274 (815)
++.+.+++.|.|.||+|||||||+|.||+...
T Consensus 23 ~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 23 NLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34567899999999999999999999998763
No 385
>PRK08116 hypothetical protein; Validated
Probab=98.43 E-value=1.6e-06 Score=91.83 Aligned_cols=100 Identities=20% Similarity=0.407 Sum_probs=61.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhhhch----hHHHHHHHHHHHHhcCCcEEEeccccccc
Q 003503 249 PKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGE----SESNLRKAFEEAEKNAPSIIFIDELDSIA 321 (815)
Q Consensus 249 ~~~VLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~----~~~~l~~vf~~a~~~~p~il~iDEid~l~ 321 (815)
+.+++|+|++|||||+||.++++.+ +.+++.++..+++...... .......+++.. ....+|+|||+...-
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l--~~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL--VNADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh--cCCCEEEEecccCCC
Confidence 4579999999999999999999986 6678888887766543211 111122233332 234699999986421
Q ss_pred CCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCC
Q 003503 322 PKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNR 360 (815)
Q Consensus 322 ~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~ 360 (815)
. . .....+|..+++........+|+ |||.
T Consensus 192 ~------t---~~~~~~l~~iin~r~~~~~~~Ii-TsN~ 220 (268)
T PRK08116 192 D------T---EWAREKVYNIIDSRYRKGLPTIV-TTNL 220 (268)
T ss_pred C------C---HHHHHHHHHHHHHHHHCCCCEEE-ECCC
Confidence 1 1 22345566666654333333444 5554
No 386
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.42 E-value=1.7e-05 Score=92.39 Aligned_cols=78 Identities=23% Similarity=0.227 Sum_probs=48.8
Q ss_pred cCCCCcceEEeCCCCCChhHHHHHHHHHh---CCcEEEEeccchhh--------------hc--------c------Ccc
Q 003503 518 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT--------------MW--------F------GES 566 (815)
Q Consensus 518 ~~~~~~gilL~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~--------------~~--------~------g~s 566 (815)
|+.....++++|+||+|||+++..++... +.+.+.+...+-.. .+ . ...
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 56666669999999999999999887653 44555554321110 00 0 001
Q ss_pred HHHHHHHHHHHhhCCCeEEEEecchhhhh
Q 003503 567 EANVREIFDKARQSAPCVLFFDELDSIAT 595 (815)
Q Consensus 567 e~~i~~~F~~a~~~~p~ilfiDEid~l~~ 595 (815)
+..+..+-+......+.+++||-+..+..
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 22334444555566788999999988864
No 387
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.42 E-value=5e-07 Score=88.67 Aligned_cols=120 Identities=26% Similarity=0.472 Sum_probs=71.7
Q ss_pred ccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhh-----
Q 003503 217 VGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSK----- 288 (815)
Q Consensus 217 i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~----- 288 (815)
|.|.+..++++++.+.... ..+..|||+|++||||+++|++|-+.. ..+|+.|+|..+...
T Consensus 1 liG~s~~m~~~~~~~~~~a-----------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA-----------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT-----------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHh-----------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 3466667777766655321 234789999999999999999998865 468999999765322
Q ss_pred hhchhH-------HHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhccc-----C----CCcE
Q 003503 289 LAGESE-------SNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----S----RAHV 352 (815)
Q Consensus 289 ~~g~~~-------~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----~----~~~v 352 (815)
..|... ..-.-.|+.|..+ .||||||+.|.+ .+...|+..++.-. . ...+
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDLPP-----------ELQAKLLRVLEEGKFTRLGSDKPVPVDV 135 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS-H-----------HHHHHHHHHHHHSEEECCTSSSEEE--E
T ss_pred hhccccccccccccccCCceeeccce---EEeecchhhhHH-----------HHHHHHHHHHhhchhccccccccccccc
Confidence 111100 0112455555444 999999998853 34556666665311 1 2367
Q ss_pred EEEEecCCC
Q 003503 353 IVMGATNRP 361 (815)
Q Consensus 353 ivi~atn~~ 361 (815)
-+|++|+..
T Consensus 136 RiI~st~~~ 144 (168)
T PF00158_consen 136 RIIASTSKD 144 (168)
T ss_dssp EEEEEESS-
T ss_pred eEEeecCcC
Confidence 788888753
No 388
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=2.7e-06 Score=93.05 Aligned_cols=147 Identities=14% Similarity=0.209 Sum_probs=97.8
Q ss_pred cccccC-hHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe----------------
Q 003503 214 YDDVGG-VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------------- 276 (815)
Q Consensus 214 ~~~i~G-~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~---------------- 276 (815)
|+.|.| ++..++.++..+... ..+..+||+||+|+||+++|+.+++.+-..
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~------------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKN------------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 555656 888888888777531 234568999999999999999999886321
Q ss_pred --------EEEEechhhhhhhhchhHHHHHHHHHHHH----hcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhh
Q 003503 277 --------FFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMD 344 (815)
Q Consensus 277 --------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld 344 (815)
+..+... +. .-.-..++.+.+... ....-|++|||+|.+. ....+.|+..++
T Consensus 72 ~~~~~hpD~~~i~~~---~~--~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~-----------~~a~NaLLK~LE 135 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---GQ--SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT-----------ASAANSLLKFLE 135 (329)
T ss_pred HhcCCCCCEEEeccc---cc--cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC-----------HHHHHHHHHHhc
Confidence 1111110 00 011234555554432 2334699999998774 234567888887
Q ss_pred cccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHH
Q 003503 345 GLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILR 393 (815)
Q Consensus 345 ~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~ 393 (815)
... ..+++|.+|+.++.+.+++++ |. ..+++..|+.++-.+.|+
T Consensus 136 EPp--~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 136 EPS--GGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred CCC--CCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHH
Confidence 643 355666678888899999998 54 568899999888777665
No 389
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=6.1e-06 Score=90.86 Aligned_cols=110 Identities=23% Similarity=0.318 Sum_probs=66.1
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHh--CCeE-EEEec--------------------------------hhhhh
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANET--GAFF-FLING--------------------------------PEIMS 287 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l--~~~~-i~v~~--------------------------------~~l~~ 287 (815)
++.+..++...|+|++|+|||||+|+||+-- +.++ -.+.+ .++..
T Consensus 100 ~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~ 179 (582)
T KOG0062|consen 100 NLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYD 179 (582)
T ss_pred ceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHH
Confidence 4456678899999999999999999999710 0000 00000 11111
Q ss_pred h---hhc-------------hhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCc
Q 003503 288 K---LAG-------------ESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH 351 (815)
Q Consensus 288 ~---~~g-------------~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~ 351 (815)
+ ..| ....+++..+..|.-..|++|++|| +.+..+-..+.+|-+.+....
T Consensus 180 ~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDE----------PTNhLDv~av~WLe~yL~t~~---- 245 (582)
T KOG0062|consen 180 KILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDE----------PTNHLDVVAVAWLENYLQTWK---- 245 (582)
T ss_pred HHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecC----------CcccchhHHHHHHHHHHhhCC----
Confidence 0 000 1223456677777788999999999 444455566777777775443
Q ss_pred EEEEEecCCCCCCCH
Q 003503 352 VIVMGATNRPNSIDP 366 (815)
Q Consensus 352 vivi~atn~~~~ld~ 366 (815)
+.++..+++...+|.
T Consensus 246 ~T~liVSHDr~FLn~ 260 (582)
T KOG0062|consen 246 ITSLIVSHDRNFLNT 260 (582)
T ss_pred ceEEEEeccHHHHHH
Confidence 344445666555543
No 390
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.41 E-value=2e-06 Score=103.59 Aligned_cols=197 Identities=24% Similarity=0.319 Sum_probs=108.6
Q ss_pred cccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHh---CCcEEEEeccchhh-
Q 003503 485 VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT- 560 (815)
Q Consensus 485 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~- 560 (815)
..++++.|.....+.+.+.+... . .....|||+|++|||||++|++|...+ +.+|+.+++..+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~----------a-~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMV----------A-QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHH----------h-CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 34567777776666555443321 1 223469999999999999999998876 46899999876532
Q ss_pred ----hccCc--------cHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCC-----
Q 003503 561 ----MWFGE--------SEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN----- 623 (815)
Q Consensus 561 ----~~~g~--------se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~----- 623 (815)
...|. ..... ..|+.|. ...||||||+.+.. .+...|+..++...
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~-g~le~a~---~GtL~Ldei~~L~~--------------~~Q~~L~~~l~~~~~~~~g 503 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRI-GRFELAD---KSSLFLDEVGDMPL--------------ELQPKLLRVLQEQEFERLG 503 (686)
T ss_pred HhhhhhcCcccccccccccchh-hHHHhcC---CCeEEEechhhCCH--------------HHHHHHHHHHHhCCEEeCC
Confidence 12221 11122 2344443 35999999999842 23444555443211
Q ss_pred C----CCcEEEEEecCCCC--CCCccccCC---CCCcceeeccCCCHHHHH----HHHHHHhcc----CCCC----Cccc
Q 003503 624 A----KKTVFIIGATNRPD--IIDPALLRP---GRLDQLIYIPLPDEASRL----QIFKACLRK----SPIS----PDVD 682 (815)
Q Consensus 624 ~----~~~v~vi~aTn~~~--~ld~allr~---gRf~~~i~~~~p~~~~r~----~Il~~~l~~----~~~~----~~~~ 682 (815)
. ..++-||++|+..- .+....+|+ -|+. .+.+..|...+|. .+++.++++ .+.. ...-
T Consensus 504 ~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~a 582 (686)
T PRK15429 504 SNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAET 582 (686)
T ss_pred CCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHH
Confidence 1 23578899998642 122222211 0332 2334445444443 344544432 2211 1112
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 003503 683 LSALARYTHGFSGADITEVCQRACKYAIR 711 (815)
Q Consensus 683 ~~~la~~t~g~sg~di~~l~~~a~~~a~~ 711 (815)
+..|..+.=-.+-++|++++++|+..+-.
T Consensus 583 l~~L~~y~WPGNvrEL~~~i~~a~~~~~~ 611 (686)
T PRK15429 583 LRTLSNMEWPGNVRELENVIERAVLLTRG 611 (686)
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHhCCC
Confidence 33444332223458999999999876543
No 391
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=6.3e-07 Score=96.11 Aligned_cols=97 Identities=35% Similarity=0.565 Sum_probs=71.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh-hhhhchh-HHHHHHHHHHHH----hcCCcEEEecccccccC
Q 003503 249 PKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM-SKLAGES-ESNLRKAFEEAE----KNAPSIIFIDELDSIAP 322 (815)
Q Consensus 249 ~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~-~~~~g~~-~~~l~~vf~~a~----~~~p~il~iDEid~l~~ 322 (815)
..+|||.||+|+|||.|++.||+.++.++...+|..+. ..|+|+- +.-+..+++.|. ..+..|+||||+|.+..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 46899999999999999999999999999999998775 3577764 555677777653 33567999999999984
Q ss_pred CCCC-ch--hHHHHHHHHHHHHhhhc
Q 003503 323 KREK-TH--GEVERRIVSQLLTLMDG 345 (815)
Q Consensus 323 ~~~~-~~--~~~~~~v~~~Ll~~ld~ 345 (815)
.... .. +--.+-+...|+.++++
T Consensus 306 ~~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 306 KAESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred cCccccccccccchhHHHHHHHHhcc
Confidence 3321 11 11123466778888865
No 392
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.39 E-value=2.3e-06 Score=99.33 Aligned_cols=171 Identities=25% Similarity=0.293 Sum_probs=96.5
Q ss_pred CcceEEeCCCCCChhHHHHHHHHHhC---CcEEEEeccchhhh-----ccCccHH-------HHHHHHHHHhhCCCeEEE
Q 003503 522 SKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTM-----WFGESEA-------NVREIFDKARQSAPCVLF 586 (815)
Q Consensus 522 ~~gilL~GppGtGKT~lakala~~~~---~~~i~v~~~~l~~~-----~~g~se~-------~i~~~F~~a~~~~p~ilf 586 (815)
...|||+|++||||+++|++|...+. .+|+.|++..+... ..|.... .....|+.|. ...||
T Consensus 210 ~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ 286 (509)
T PRK05022 210 DLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFELAD---GGTLF 286 (509)
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCccccccCCCcccCCcchhhcC---CCEEE
Confidence 44699999999999999999998864 68999998876321 1221100 0011344443 34899
Q ss_pred EecchhhhhccCCCCCCCCchHHHHHHHHHhccccCC-----C----CCcEEEEEecCCCC-------CCCccccCCCCC
Q 003503 587 FDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN-----A----KKTVFIIGATNRPD-------IIDPALLRPGRL 650 (815)
Q Consensus 587 iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----~----~~~v~vi~aTn~~~-------~ld~allr~gRf 650 (815)
||||+.+.. .+...|+..++... + .-++-||++||+.- .+.+.|.. |+
T Consensus 287 ldeI~~L~~--------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl 350 (509)
T PRK05022 287 LDEIGELPL--------------ALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYH--RL 350 (509)
T ss_pred ecChhhCCH--------------HHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHHHcCCccHHHHh--cc
Confidence 999999843 23445555444211 1 12578999998641 23333333 44
Q ss_pred c-ceeeccCCCH--HHHHHHHHHHhcc----CCCC-Cccc---HHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 003503 651 D-QLIYIPLPDE--ASRLQIFKACLRK----SPIS-PDVD---LSALARYTHGFSGADITEVCQRACKYAIR 711 (815)
Q Consensus 651 ~-~~i~~~~p~~--~~r~~Il~~~l~~----~~~~-~~~~---~~~la~~t~g~sg~di~~l~~~a~~~a~~ 711 (815)
. ..|++|+... ++.-.+++.++++ .+.. ..++ +..|..+.=-.+-++|++++++|+..+-.
T Consensus 351 ~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~~~ 422 (509)
T PRK05022 351 SVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLARA 422 (509)
T ss_pred cccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhcCC
Confidence 3 2345554432 2233344444432 2111 1122 33343332223458999999999987754
No 393
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=8.1e-08 Score=105.26 Aligned_cols=48 Identities=31% Similarity=0.587 Sum_probs=39.4
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHh
Q 003503 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC 546 (815)
Q Consensus 484 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~ 546 (815)
...+.||.|++..|+.|..... ..+++||+||||||||+||+-+.+.+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA---------------GgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA---------------GGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh---------------cCCcEEEecCCCCchHHhhhhhcccC
Confidence 3468899999999998865432 24579999999999999999888776
No 394
>PRK09183 transposase/IS protein; Provisional
Probab=98.38 E-value=1.4e-06 Score=91.77 Aligned_cols=75 Identities=24% Similarity=0.487 Sum_probs=52.2
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhhhc-hhHHHHHHHHHHHHhcCCcEEEeccccccc
Q 003503 246 VKPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAG-ESESNLRKAFEEAEKNAPSIIFIDELDSIA 321 (815)
Q Consensus 246 i~~~~~VLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g-~~~~~l~~vf~~a~~~~p~il~iDEid~l~ 321 (815)
+..+.+++|+||||||||+|+.+|+... +..+..+++.++...... .....+..+++.. ...+.+++|||++...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 3457899999999999999999997664 566777777776543221 1112344556554 3456799999998654
No 395
>PRK08181 transposase; Validated
Probab=98.38 E-value=9.6e-07 Score=93.05 Aligned_cols=100 Identities=24% Similarity=0.359 Sum_probs=63.8
Q ss_pred CcceEEeCCCCCChhHHHHHHHHHh---CCcEEEEeccchhhhccC-ccHHHHHHHHHHHhhCCCeEEEEecchhhhhcc
Q 003503 522 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFG-ESEANVREIFDKARQSAPCVLFFDELDSIATQR 597 (815)
Q Consensus 522 ~~gilL~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~~~g-~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r 597 (815)
..+++|+||||||||+||.+++.++ +..++.++.++++..+.. ........+++... .+.+|+|||++.+...
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~~~- 182 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVTKD- 182 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccccCC-
Confidence 4579999999999999999999765 556778888888765421 11123344555443 3469999999875321
Q ss_pred CCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCC
Q 003503 598 GSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP 637 (815)
Q Consensus 598 ~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~ 637 (815)
......+-++++...+ .+ -+|.|||.+
T Consensus 183 --------~~~~~~Lf~lin~R~~---~~--s~IiTSN~~ 209 (269)
T PRK08181 183 --------QAETSVLFELISARYE---RR--SILITANQP 209 (269)
T ss_pred --------HHHHHHHHHHHHHHHh---CC--CEEEEcCCC
Confidence 2233445555543321 22 366678765
No 396
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.37 E-value=9.1e-07 Score=91.50 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=28.1
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l~ 274 (815)
++.+.+++.+.|.||+|||||||+|+|++.+.
T Consensus 22 s~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 22 SFSIPKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred eEEecCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34567788999999999999999999999775
No 397
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.37 E-value=1.2e-06 Score=95.20 Aligned_cols=132 Identities=20% Similarity=0.272 Sum_probs=88.7
Q ss_pred CCCcceEEeCCCCCChhHHHHHHHHHhCC-------------------------cEEEEeccc---hhhhc-cCccHHHH
Q 003503 520 SPSKGVLFYGPPGCGKTLLAKAIANECQA-------------------------NFISVKGPE---LLTMW-FGESEANV 570 (815)
Q Consensus 520 ~~~~gilL~GppGtGKT~lakala~~~~~-------------------------~~i~v~~~~---l~~~~-~g~se~~i 570 (815)
+.+..+||+||+|+|||++|+.+|..+.. .|+.+.... -.++. ..-+-..|
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 44567999999999999999999988531 244443211 00000 00123456
Q ss_pred HHHHHHHhh----CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCCCCccccC
Q 003503 571 REIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLR 646 (815)
Q Consensus 571 ~~~F~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr 646 (815)
|++.+.+.. ....|+++|+++.+- ....+.||..|+... .++.+|.+|+.++.+.+.+.+
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld--------------~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMN--------------LQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCC--------------HHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHHH
Confidence 766666543 445799999999873 234566777777653 335566688888888888887
Q ss_pred CCCCcceeeccCCCHHHHHHHHHH
Q 003503 647 PGRLDQLIYIPLPDEASRLQIFKA 670 (815)
Q Consensus 647 ~gRf~~~i~~~~p~~~~r~~Il~~ 670 (815)
|+ ..+.|++|+.++..+.+..
T Consensus 163 --Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 --RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred --Hh-hhhcCCCCCHHHHHHHHHh
Confidence 77 5889999999887777754
No 398
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.36 E-value=2.3e-06 Score=92.16 Aligned_cols=129 Identities=14% Similarity=0.208 Sum_probs=91.0
Q ss_pred CCCcceEEeCCCCCChhHHHHHHHHHhCC-----------------------cEEEEeccchhhhccCccHHHHHHHHHH
Q 003503 520 SPSKGVLFYGPPGCGKTLLAKAIANECQA-----------------------NFISVKGPELLTMWFGESEANVREIFDK 576 (815)
Q Consensus 520 ~~~~gilL~GppGtGKT~lakala~~~~~-----------------------~~i~v~~~~l~~~~~g~se~~i~~~F~~ 576 (815)
+.+..+||+||.|+||+++|+++|..+-. .|+.+.... .++.+ +-..||++-+.
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~I--~vdqiR~l~~~ 99 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKSI--TVEQIRQCNRL 99 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCcC--CHHHHHHHHHH
Confidence 34567999999999999999999987521 133332211 00101 12345655444
Q ss_pred H----hhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcc
Q 003503 577 A----RQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQ 652 (815)
Q Consensus 577 a----~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~ 652 (815)
+ ......|++||++|.+. ...-|.||+.++. +..++++|..|+.++.|-|.+++ |+.
T Consensus 100 ~~~~~~~~~~kV~iI~~ae~m~--------------~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RCq- 160 (319)
T PRK06090 100 AQESSQLNGYRLFVIEPADAMN--------------ESASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RCQ- 160 (319)
T ss_pred HhhCcccCCceEEEecchhhhC--------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cce-
Confidence 4 33445799999999983 3356889999985 45677888888889999998887 885
Q ss_pred eeeccCCCHHHHHHHHHH
Q 003503 653 LIYIPLPDEASRLQIFKA 670 (815)
Q Consensus 653 ~i~~~~p~~~~r~~Il~~ 670 (815)
.+.|++|+.++..+.+..
T Consensus 161 ~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 161 QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred eEeCCCCCHHHHHHHHHH
Confidence 889999999888877764
No 399
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.36 E-value=1.4e-06 Score=102.00 Aligned_cols=53 Identities=28% Similarity=0.523 Sum_probs=43.2
Q ss_pred cccCCcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhC
Q 003503 480 VEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ 547 (815)
Q Consensus 480 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~ 547 (815)
...|+..|+++.|+++++..|...+.. .++++|+||||||||+++++++..+.
T Consensus 23 ~~~~~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 23 IEVPERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred cccCcccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 346678899999999998877665432 13699999999999999999998875
No 400
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.36 E-value=1.1e-06 Score=97.84 Aligned_cols=197 Identities=24% Similarity=0.372 Sum_probs=115.3
Q ss_pred cccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhC---CcEEEEeccchhhh--
Q 003503 487 WEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTM-- 561 (815)
Q Consensus 487 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~---~~~i~v~~~~l~~~-- 561 (815)
..++.|.....+++.+.+.. +. .....||++|++||||-++|++|-..+. .|||.|+|..+-..
T Consensus 140 ~~~liG~S~am~~l~~~i~k----------vA-~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ 208 (464)
T COG2204 140 GGELVGESPAMQQLRRLIAK----------VA-PSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLL 208 (464)
T ss_pred cCCceecCHHHHHHHHHHHH----------Hh-CCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHH
Confidence 34555655555555544331 11 2234599999999999999999998875 59999998665321
Q ss_pred ---ccC--------ccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccc-----cCCCC
Q 003503 562 ---WFG--------ESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMD-----GMNAK 625 (815)
Q Consensus 562 ---~~g--------~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld-----~~~~~ 625 (815)
.+| ...+. .-.|+.|.+. .||+|||..+.. .+...||..+. .+.++
T Consensus 209 ESELFGhekGAFTGA~~~r-~G~fE~A~GG---TLfLDEI~~mpl--------------~~Q~kLLRvLqe~~~~rvG~~ 270 (464)
T COG2204 209 ESELFGHEKGAFTGAITRR-IGRFEQANGG---TLFLDEIGEMPL--------------ELQVKLLRVLQEREFERVGGN 270 (464)
T ss_pred HHHhhcccccCcCCccccc-CcceeEcCCc---eEEeeccccCCH--------------HHHHHHHHHHHcCeeEecCCC
Confidence 122 11111 1256666554 999999988742 24444554443 23222
Q ss_pred ----CcEEEEEecCCCCCCCccccCCCCCc-------ceeeccCCCHHHHHH----HHHHHhcc----CCCC-CcccHHH
Q 003503 626 ----KTVFIIGATNRPDIIDPALLRPGRLD-------QLIYIPLPDEASRLQ----IFKACLRK----SPIS-PDVDLSA 685 (815)
Q Consensus 626 ----~~v~vi~aTn~~~~ld~allr~gRf~-------~~i~~~~p~~~~r~~----Il~~~l~~----~~~~-~~~~~~~ 685 (815)
-+|-||+|||+. |...+-. |||- .++.+..|...+|.+ +++.++++ .+.. ..++-+.
T Consensus 271 ~~i~vdvRiIaaT~~d--L~~~v~~-G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a 347 (464)
T COG2204 271 KPIKVDVRIIAATNRD--LEEEVAA-GRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEA 347 (464)
T ss_pred cccceeeEEEeecCcC--HHHHHHc-CCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHH
Confidence 258899999973 2222222 3443 245555666555543 44444433 3221 2344444
Q ss_pred HHHH-cCCCCH--HHHHHHHHHHHHHHHHHHHH
Q 003503 686 LARY-THGFSG--ADITEVCQRACKYAIRENIE 715 (815)
Q Consensus 686 la~~-t~g~sg--~di~~l~~~a~~~a~~~~~~ 715 (815)
++.. +..|.| ++|+|+|.+++..+-...+.
T Consensus 348 ~~~L~~y~WPGNVREL~N~ver~~il~~~~~i~ 380 (464)
T COG2204 348 LAALLAYDWPGNVRELENVVERAVILSEGPEIE 380 (464)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHhcCCccccc
Confidence 4443 355665 79999999999887655443
No 401
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.34 E-value=4.4e-06 Score=95.61 Aligned_cols=48 Identities=27% Similarity=0.520 Sum_probs=37.2
Q ss_pred CCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 003503 212 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (815)
Q Consensus 212 ~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~ 274 (815)
..|+++.|.+..++.+.- .+..+.+++|+|||||||||+++.+++.+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~---------------aa~~g~~vlliG~pGsGKTtlar~l~~llp 236 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEI---------------AAAGGHNLLLFGPPGSGKTMLASRLQGILP 236 (499)
T ss_pred CCHHHhcCcHHHHhhhhh---------------hccCCCEEEEEecCCCCHHHHHHHHhcccC
Confidence 367888888777555432 224567899999999999999999998764
No 402
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.34 E-value=2e-06 Score=99.98 Aligned_cols=169 Identities=18% Similarity=0.267 Sum_probs=93.8
Q ss_pred cceEEeCCCCCChhHHHHHHHHHh---CCcEEEEeccchhhh-----ccCccH-------HHHHHHHHHHhhCCCeEEEE
Q 003503 523 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM-----WFGESE-------ANVREIFDKARQSAPCVLFF 587 (815)
Q Consensus 523 ~gilL~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~-----~~g~se-------~~i~~~F~~a~~~~p~ilfi 587 (815)
..++|+|++||||+++|+++-..+ ..+|+.+++..+... ..|... ..-..+|+.|.. ..|||
T Consensus 228 ~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~---GtL~L 304 (520)
T PRK10820 228 APLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQANG---GSVLL 304 (520)
T ss_pred CCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhhcCC---CEEEE
Confidence 459999999999999999987665 368999999776421 112110 001124555433 48999
Q ss_pred ecchhhhhccCCCCCCCCchHHHHHHHHHhccccC-----CC----CCcEEEEEecCCCC-------CCCccccCCCCCc
Q 003503 588 DELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGM-----NA----KKTVFIIGATNRPD-------IIDPALLRPGRLD 651 (815)
Q Consensus 588 DEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~-----~~----~~~v~vi~aTn~~~-------~ld~allr~gRf~ 651 (815)
|||+.+... +...|+..+... .. ..++-||+||+.+- .+.+.|.. |+.
T Consensus 305 deI~~L~~~--------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~ 368 (520)
T PRK10820 305 DEIGEMSPR--------------MQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN 368 (520)
T ss_pred eChhhCCHH--------------HHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC
Confidence 999998432 334444444321 11 12567888887641 23344444 554
Q ss_pred -ceeeccCCCH--HHHHHHHHHHhc----cCCCC-CcccHHHHHHH-cCCCC--HHHHHHHHHHHHHHHH
Q 003503 652 -QLIYIPLPDE--ASRLQIFKACLR----KSPIS-PDVDLSALARY-THGFS--GADITEVCQRACKYAI 710 (815)
Q Consensus 652 -~~i~~~~p~~--~~r~~Il~~~l~----~~~~~-~~~~~~~la~~-t~g~s--g~di~~l~~~a~~~a~ 710 (815)
..|.+|+... +....+++.+++ +.+.. ..+.-+.+... ...|. -++|++++.+|+..+-
T Consensus 369 ~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~~~~ 438 (520)
T PRK10820 369 VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALTQLE 438 (520)
T ss_pred eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC
Confidence 3445554433 223334444443 22221 12333333322 23344 4799999998887653
No 403
>PRK09183 transposase/IS protein; Provisional
Probab=98.33 E-value=9e-07 Score=93.30 Aligned_cols=71 Identities=24% Similarity=0.412 Sum_probs=50.2
Q ss_pred CcceEEeCCCCCChhHHHHHHHHHh---CCcEEEEeccchhhhccC-ccHHHHHHHHHHHhhCCCeEEEEecchhh
Q 003503 522 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFG-ESEANVREIFDKARQSAPCVLFFDELDSI 593 (815)
Q Consensus 522 ~~gilL~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~~~g-~se~~i~~~F~~a~~~~p~ilfiDEid~l 593 (815)
..+++|+||||||||+|+.+++... +..+..++.+++...+.. .....+..+|+... ..+.+++|||++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~-~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGV-MAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHh-cCCCEEEEcccccC
Confidence 4569999999999999999998764 456667777777644321 11223556676643 45679999999775
No 404
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.33 E-value=1.5e-06 Score=90.25 Aligned_cols=100 Identities=21% Similarity=0.289 Sum_probs=65.9
Q ss_pred cceEEeCCCCCChhHHHHHHHHHh---CCcEEEEeccchhhhccCc---cHHHHHHHHHHHhhCCCeEEEEecchhhhhc
Q 003503 523 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE---SEANVREIFDKARQSAPCVLFFDELDSIATQ 596 (815)
Q Consensus 523 ~gilL~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~~~g~---se~~i~~~F~~a~~~~p~ilfiDEid~l~~~ 596 (815)
.+++|+|+||||||+|+.++|.++ +..++.++.++++....+. .......+++... ..++|+|||++....
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~- 176 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTE- 176 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCC-
Confidence 479999999999999999999987 5677888888887543221 1122334555543 357999999987521
Q ss_pred cCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCC
Q 003503 597 RGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP 637 (815)
Q Consensus 597 r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~ 637 (815)
..+...++.+++..-- ..+.-+|.|||..
T Consensus 177 --------s~~~~~~l~~Ii~~Ry----~~~~~tiitSNl~ 205 (244)
T PRK07952 177 --------SRYEKVIINQIVDRRS----SSKRPTGMLTNSN 205 (244)
T ss_pred --------CHHHHHHHHHHHHHHH----hCCCCEEEeCCCC
Confidence 2344556666665421 2223566688854
No 405
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.33 E-value=3.2e-06 Score=79.30 Aligned_cols=98 Identities=22% Similarity=0.411 Sum_probs=60.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh--------CCeEEEEechhhhh----------h----hhc--hhHHHHHHHHHHH
Q 003503 249 PKGILLYGPPGSGKTLIARAVANET--------GAFFFLINGPEIMS----------K----LAG--ESESNLRKAFEEA 304 (815)
Q Consensus 249 ~~~VLL~GppGtGKTtLar~la~~l--------~~~~i~v~~~~l~~----------~----~~g--~~~~~l~~vf~~a 304 (815)
...++|+||+|+|||++++.++..+ ...++.++++...+ . ... ........+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 5679999999999999999999887 66778887654321 0 001 1233344444555
Q ss_pred HhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEec
Q 003503 305 EKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGAT 358 (815)
Q Consensus 305 ~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~at 358 (815)
......+|+|||+|.+. + ....+.|..+++ .....++++|+.
T Consensus 84 ~~~~~~~lviDe~~~l~-~---------~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-S---------DEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHH-T---------HHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcC-C---------HHHHHHHHHHHh--CCCCeEEEEECh
Confidence 55545699999999874 1 345566666666 334456666654
No 406
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.33 E-value=1.2e-05 Score=94.69 Aligned_cols=53 Identities=28% Similarity=0.417 Sum_probs=44.6
Q ss_pred cCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe
Q 003503 209 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF 276 (815)
Q Consensus 209 ~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~ 276 (815)
.++..++++.|+++.++.++.++.. +.+++|+|||||||||+++++++.++..
T Consensus 12 ~~~~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 12 VPERLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred cchhhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 3556788999999999888777653 3589999999999999999999998754
No 407
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.32 E-value=6.8e-06 Score=89.25 Aligned_cols=160 Identities=24% Similarity=0.383 Sum_probs=100.3
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEec--------
Q 003503 211 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLING-------- 282 (815)
Q Consensus 211 ~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~v~~-------- 282 (815)
.+.|..+.|.+..+..|---. - ...-.++||.|+.|+||||++|+|+..++...+...|
T Consensus 13 ~~pf~aivGqd~lk~aL~l~a----v---------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNA----V---------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHhhhh----c---------ccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 456777899887665542111 1 1223679999999999999999999998754433333
Q ss_pred h-----h-------------------hhhhhhchhHHH-HHHH-HHHHHh-------------cCCcEEEecccccccCC
Q 003503 283 P-----E-------------------IMSKLAGESESN-LRKA-FEEAEK-------------NAPSIIFIDELDSIAPK 323 (815)
Q Consensus 283 ~-----~-------------------l~~~~~g~~~~~-l~~v-f~~a~~-------------~~p~il~iDEid~l~~~ 323 (815)
+ . +.....+.++.+ ++.+ .+.+.. ....|+++||+..|.
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~-- 157 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLD-- 157 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEecccccc--
Confidence 0 0 111112223331 1111 111111 123699999998764
Q ss_pred CCCchhHHHHHHHHHHHHhhhc-----------ccCCCcEEEEEecCCCC-CCCHHhhccCCcceEEEcCCC-CHHHHHH
Q 003503 324 REKTHGEVERRIVSQLLTLMDG-----------LKSRAHVIVMGATNRPN-SIDPALRRFGRFDREIDIGVP-DEVGRLE 390 (815)
Q Consensus 324 ~~~~~~~~~~~v~~~Ll~~ld~-----------~~~~~~vivi~atn~~~-~ld~al~r~~rf~~~i~i~~p-~~~~R~~ 390 (815)
.+++..|+..+.. +....++++|+|+|+.+ .|-+.|.- ||...+.+..| +.++|.+
T Consensus 158 ---------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~ 226 (423)
T COG1239 158 ---------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVE 226 (423)
T ss_pred ---------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHH
Confidence 4577777776653 12235789999999764 56677766 89888877766 5788888
Q ss_pred HHHHHh
Q 003503 391 ILRIHT 396 (815)
Q Consensus 391 il~~~~ 396 (815)
|.+..+
T Consensus 227 Ii~r~~ 232 (423)
T COG1239 227 IIRRRL 232 (423)
T ss_pred HHHHHH
Confidence 887543
No 408
>PF13173 AAA_14: AAA domain
Probab=98.31 E-value=3.4e-06 Score=79.04 Aligned_cols=70 Identities=30% Similarity=0.397 Sum_probs=47.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhC--CeEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCcEEEecccccc
Q 003503 249 PKGILLYGPPGSGKTLIARAVANETG--AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSI 320 (815)
Q Consensus 249 ~~~VLL~GppGtGKTtLar~la~~l~--~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l 320 (815)
.+.++|+||.||||||+++.+++.+. ..++.++..+.......... +...+.+.....+.++||||+..+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 35689999999999999999998876 66788887655432111111 222222222235679999999877
No 409
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.31 E-value=6.9e-06 Score=94.25 Aligned_cols=172 Identities=18% Similarity=0.241 Sum_probs=97.0
Q ss_pred cceEEeCCCCCChhHHHHHHHHHhCCcEEEEeccchh-------hhccCccHH-----HHHHHHH-----HHhh------
Q 003503 523 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------TMWFGESEA-----NVREIFD-----KARQ------ 579 (815)
Q Consensus 523 ~gilL~GppGtGKT~lakala~~~~~~~i~v~~~~l~-------~~~~g~se~-----~i~~~F~-----~a~~------ 579 (815)
+-+||+|||||||||++++||.+++..+.....+-.. ..|.+.... .-...|. .++.
T Consensus 46 ~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~ 125 (519)
T PF03215_consen 46 RILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMS 125 (519)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccccccchhhhhcccccccccccccccc
Confidence 3588999999999999999999999888776443221 111111110 0011222 1121
Q ss_pred -----CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEec-------CCC--------CC
Q 003503 580 -----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGAT-------NRP--------DI 639 (815)
Q Consensus 580 -----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aT-------n~~--------~~ 639 (815)
..+.||++||+=.++.. + ......++.++ +..-. ...+++|.+- |.. ..
T Consensus 126 g~~~~~~~kvILVEDlPN~~~~------~-~~~f~~~L~~~---l~~~~-~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L 194 (519)
T PF03215_consen 126 GSNSSSNKKVILVEDLPNVFHR------D-TSRFREALRQY---LRSSR-CLPLVFIISETESLSGDNSYRSNSFTAERL 194 (519)
T ss_pred CCCcCCCceEEEeeccccccch------h-HHHHHHHHHHH---HHcCC-CCCEEEEEecccccCCCCcccccchhhhhc
Confidence 24679999998755421 1 12223333333 33211 1166666661 111 13
Q ss_pred CCccccCCCCCcceeeccCCCHHHHHHHHHHHhccC--------CCCCccc-HHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 003503 640 IDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS--------PISPDVD-LSALARYTHGFSGADITEVCQRACKYAI 710 (815)
Q Consensus 640 ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~--------~~~~~~~-~~~la~~t~g~sg~di~~l~~~a~~~a~ 710 (815)
+.+.++.-.++ .+|.|.+-.....++.|+..+... ......+ ++.|++. |++||+..+....+.+.
T Consensus 195 ~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~----s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 195 FPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAES----SNGDIRSAINNLQFWCL 269 (519)
T ss_pred cCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHHh----cCchHHHHHHHHHHHhc
Confidence 55666542233 578888887776666666665433 1122122 5666664 44699999999998888
No 410
>PRK08181 transposase; Validated
Probab=98.30 E-value=2.4e-06 Score=90.09 Aligned_cols=73 Identities=25% Similarity=0.466 Sum_probs=50.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhhhch-hHHHHHHHHHHHHhcCCcEEEecccccccC
Q 003503 248 PPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGE-SESNLRKAFEEAEKNAPSIIFIDELDSIAP 322 (815)
Q Consensus 248 ~~~~VLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~-~~~~l~~vf~~a~~~~p~il~iDEid~l~~ 322 (815)
.+.+++|+||||||||+|+.+++..+ +..++.++..+++...... ........+... ..+.+|+|||+.....
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~ 181 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTK 181 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccC
Confidence 46789999999999999999998764 6667788877776543211 111222333333 3467999999987643
No 411
>PF13173 AAA_14: AAA domain
Probab=98.30 E-value=2.9e-06 Score=79.49 Aligned_cols=119 Identities=20% Similarity=0.272 Sum_probs=69.9
Q ss_pred cceEEeCCCCCChhHHHHHHHHHhC--CcEEEEeccchhhhccCccHHHHHHHHHHHhhCCCeEEEEecchhhhhccCCC
Q 003503 523 KGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSS 600 (815)
Q Consensus 523 ~gilL~GppGtGKT~lakala~~~~--~~~i~v~~~~l~~~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r~~~ 600 (815)
+-++|+||.||||||+++.++..+. .+++.++..+.......... +...|.+.......++|||||+.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~------ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLP------ 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhc------
Confidence 3489999999999999999998876 67777877665432111111 2233333222256799999998872
Q ss_pred CCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCCCCc---cccCCCCCcceeeccCCCHHH
Q 003503 601 TGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDP---ALLRPGRLDQLIYIPLPDEAS 663 (815)
Q Consensus 601 ~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~---allr~gRf~~~i~~~~p~~~~ 663 (815)
.....+..+... ..++-||.|++....+.. ..+ +||.. .+.+.|.+..|
T Consensus 75 ------~~~~~lk~l~d~------~~~~~ii~tgS~~~~l~~~~~~~l-~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 75 ------DWEDALKFLVDN------GPNIKIILTGSSSSLLSKDIAESL-AGRVI-EIELYPLSFRE 126 (128)
T ss_pred ------cHHHHHHHHHHh------ccCceEEEEccchHHHhhcccccC-CCeEE-EEEECCCCHHH
Confidence 123344444431 123344444443333321 223 37876 67777777755
No 412
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.29 E-value=1.9e-05 Score=81.10 Aligned_cols=98 Identities=20% Similarity=0.194 Sum_probs=64.6
Q ss_pred EEEEecCC------------CCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHcCCCCH
Q 003503 629 FIIGATNR------------PDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVD-LSALARYTHGFSG 695 (815)
Q Consensus 629 ~vi~aTn~------------~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~-~~~la~~t~g~sg 695 (815)
+||+|||| |.-|+-.|+. |+ .+|...+++.++..+||+..+....+.-+.| ++.|......-|-
T Consensus 319 iiimaTNrgit~iRGTn~~SphGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsL 395 (454)
T KOG2680|consen 319 IIIMATNRGITRIRGTNYRSPHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSL 395 (454)
T ss_pred EEEEEcCCceEEeecCCCCCCCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhH
Confidence 67777876 3345556665 54 4667778999999999999987765543332 4444444444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccccHHHHHHHHhhc
Q 003503 696 ADITEVCQRACKYAIRENIEKDIERERRKRENPEAMEEDEVDDVAEIKAVHFEESMKYA 754 (815)
Q Consensus 696 ~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~ 754 (815)
+.-.+++..|.+.|+++. ...+..+|++.+.+.+
T Consensus 396 RYai~Lit~a~~~~~krk-------------------------~~~v~~~di~r~y~LF 429 (454)
T KOG2680|consen 396 RYAIHLITAASLVCLKRK-------------------------GKVVEVDDIERVYRLF 429 (454)
T ss_pred HHHHHHHHHHHHHHHHhc-------------------------CceeehhHHHHHHHHH
Confidence 555677777777777654 2357778888887765
No 413
>PRK06526 transposase; Provisional
Probab=98.29 E-value=1.2e-06 Score=91.89 Aligned_cols=100 Identities=22% Similarity=0.319 Sum_probs=59.6
Q ss_pred CcceEEeCCCCCChhHHHHHHHHHh---CCcEEEEeccchhhhccCc-cHHHHHHHHHHHhhCCCeEEEEecchhhhhcc
Q 003503 522 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE-SEANVREIFDKARQSAPCVLFFDELDSIATQR 597 (815)
Q Consensus 522 ~~gilL~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~~~g~-se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r 597 (815)
..+++|+||||||||+||.+++.++ +...+.++.++++...... ....+...+... ..+.+|+|||++.+..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~-- 173 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPF-- 173 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCC--
Confidence 4579999999999999999999875 4455555666665433110 111222333332 2357999999988632
Q ss_pred CCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCC
Q 003503 598 GSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP 637 (815)
Q Consensus 598 ~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~ 637 (815)
......++.+++..... .. -+|.|||.+
T Consensus 174 -------~~~~~~~L~~li~~r~~---~~--s~IitSn~~ 201 (254)
T PRK06526 174 -------EPEAANLFFQLVSSRYE---RA--SLIVTSNKP 201 (254)
T ss_pred -------CHHHHHHHHHHHHHHHh---cC--CEEEEcCCC
Confidence 12333445555543321 22 366688875
No 414
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.29 E-value=1.6e-06 Score=89.30 Aligned_cols=112 Identities=21% Similarity=0.304 Sum_probs=72.8
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeE--EEEech-----------------------------hhh--h--
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF--FLINGP-----------------------------EIM--S-- 287 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~--i~v~~~-----------------------------~l~--~-- 287 (815)
++.+.++.-+.|+||+|+|||||+|++.+.+.... +.+.+. +++ +
T Consensus 24 ~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~ 103 (254)
T COG1121 24 SLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRY 103 (254)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCc
Confidence 34567788999999999999999999998653221 111110 000 0
Q ss_pred -------------------------------hhhch--hHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHH
Q 003503 288 -------------------------------KLAGE--SESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERR 334 (815)
Q Consensus 288 -------------------------------~~~g~--~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~ 334 (815)
+..++ ..+.-|..++.|..+.|.++++|| +...++..
T Consensus 104 ~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDE----------P~~gvD~~ 173 (254)
T COG1121 104 GKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDE----------PFTGVDVA 173 (254)
T ss_pred ccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecC----------CcccCCHH
Confidence 00011 234457778888889999999999 23333444
Q ss_pred HHHHHHHhhhcccCCCcEEEEEecCCCCCCC
Q 003503 335 IVSQLLTLMDGLKSRAHVIVMGATNRPNSID 365 (815)
Q Consensus 335 v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld 365 (815)
....+..++..++.. ...|+..+++.+.+.
T Consensus 174 ~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~ 203 (254)
T COG1121 174 GQKEIYDLLKELRQE-GKTVLMVTHDLGLVM 203 (254)
T ss_pred HHHHHHHHHHHHHHC-CCEEEEEeCCcHHhH
Confidence 556677777777777 667777888776543
No 415
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.27 E-value=3.4e-06 Score=85.51 Aligned_cols=32 Identities=19% Similarity=0.401 Sum_probs=28.0
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l~ 274 (815)
++.+.+++.|.|.||+|||||||+..+++...
T Consensus 25 ~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 25 NLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 45678899999999999999999999997653
No 416
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.27 E-value=1.5e-06 Score=93.67 Aligned_cols=101 Identities=26% Similarity=0.332 Sum_probs=63.2
Q ss_pred CcceEEeCCCCCChhHHHHHHHHHh---CCcEEEEeccchhhhccCc-cHHHHHHHHHHHhhCCCeEEEEecchhhhhcc
Q 003503 522 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE-SEANVREIFDKARQSAPCVLFFDELDSIATQR 597 (815)
Q Consensus 522 ~~gilL~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~~~g~-se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r 597 (815)
.+|++|+||+|||||+|+.++|+++ +.....+..++++...... ....+...++.... ..+|+|||+..-.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~--~dlLiIDDiG~e~--- 230 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVKE--APVLMLDDIGAEQ--- 230 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcC--CCEEEEecCCCcc---
Confidence 4689999999999999999999997 5667777888776543211 01123344444433 3699999996632
Q ss_pred CCCCCCCCchHH-HHHHHHHhccccCCCCCcEEEEEecCCC
Q 003503 598 GSSTGDAGGAAD-RVLNQLLTEMDGMNAKKTVFIIGATNRP 637 (815)
Q Consensus 598 ~~~~~~~~~~~~-~vl~~lL~~ld~~~~~~~v~vi~aTn~~ 637 (815)
.+.+.. .++..+++.-- ..+.-.|.|||.+
T Consensus 231 ------~s~~~~~~ll~~Il~~R~----~~~~~ti~TSNl~ 261 (306)
T PRK08939 231 ------MSSWVRDEVLGVILQYRM----QEELPTFFTSNFD 261 (306)
T ss_pred ------ccHHHHHHHHHHHHHHHH----HCCCeEEEECCCC
Confidence 122333 45555554310 1233577788854
No 417
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.27 E-value=2.2e-06 Score=84.04 Aligned_cols=110 Identities=17% Similarity=0.212 Sum_probs=68.0
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEechhhhh--------hhh-----chhHHHHHHHHHHHHhc
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMS--------KLA-----GESESNLRKAFEEAEKN 307 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~~--------~~~-----g~~~~~l~~vf~~a~~~ 307 (815)
++.+.++..+.|.||+|+|||||+++|++..... -+.+++.++.. ... -...++.+..+..+...
T Consensus 20 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~ 99 (163)
T cd03216 20 SLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALAR 99 (163)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhc
Confidence 3457889999999999999999999999986432 24444433211 101 11234556677888888
Q ss_pred CCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCC
Q 003503 308 APSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNS 363 (815)
Q Consensus 308 ~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ 363 (815)
.|.++++||-..-+ +......+..++..+..+ ...+|.+|++.+.
T Consensus 100 ~p~illlDEP~~~L----------D~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~ 144 (163)
T cd03216 100 NARLLILDEPTAAL----------TPAEVERLFKVIRRLRAQ-GVAVIFISHRLDE 144 (163)
T ss_pred CCCEEEEECCCcCC----------CHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHH
Confidence 99999999954332 222334444444444333 3345556776543
No 418
>PRK12377 putative replication protein; Provisional
Probab=98.27 E-value=2.4e-06 Score=88.99 Aligned_cols=100 Identities=23% Similarity=0.279 Sum_probs=61.7
Q ss_pred cceEEeCCCCCChhHHHHHHHHHh---CCcEEEEeccchhhhccCc--cHHHHHHHHHHHhhCCCeEEEEecchhhhhcc
Q 003503 523 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE--SEANVREIFDKARQSAPCVLFFDELDSIATQR 597 (815)
Q Consensus 523 ~gilL~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~~~g~--se~~i~~~F~~a~~~~p~ilfiDEid~l~~~r 597 (815)
.+++|+||||||||+||.++++.+ +..++.++.++++...... .......+++... ...+|+|||+.....
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~--~~dLLiIDDlg~~~~-- 177 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELC--KVDLLVLDEIGIQRE-- 177 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCCC--
Confidence 579999999999999999999987 4567777888877543210 0011223444443 346999999976421
Q ss_pred CCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCC
Q 003503 598 GSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP 637 (815)
Q Consensus 598 ~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~ 637 (815)
..+...++.+++..-. ....-+|.|||..
T Consensus 178 -------s~~~~~~l~~ii~~R~----~~~~ptiitSNl~ 206 (248)
T PRK12377 178 -------TKNEQVVLNQIIDRRT----ASMRSVGMLTNLN 206 (248)
T ss_pred -------CHHHHHHHHHHHHHHH----hcCCCEEEEcCCC
Confidence 2234445555554422 1122356678864
No 419
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.26 E-value=3e-06 Score=80.14 Aligned_cols=33 Identities=30% Similarity=0.493 Sum_probs=29.2
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGA 275 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~ 275 (815)
+|.+.++..++|+||+|||||||.|++|.....
T Consensus 23 sl~v~~Ge~iaitGPSG~GKStllk~va~Lisp 55 (223)
T COG4619 23 SLSVRAGEFIAITGPSGCGKSTLLKIVASLISP 55 (223)
T ss_pred eeeecCCceEEEeCCCCccHHHHHHHHHhccCC
Confidence 556789999999999999999999999987643
No 420
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.25 E-value=1.1e-05 Score=78.80 Aligned_cols=132 Identities=25% Similarity=0.376 Sum_probs=83.6
Q ss_pred ChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-----------------------
Q 003503 219 GVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA----------------------- 275 (815)
Q Consensus 219 G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~----------------------- 275 (815)
|+++.++.+..++.. -.-+..+||+||+|+||+++|+++|..+-.
T Consensus 1 gq~~~~~~L~~~~~~------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHC------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHc------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 667777888777653 133567999999999999999999987622
Q ss_pred eEEEEechhhhhhhhchhHHHHHHHHHHHH----hcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCc
Q 003503 276 FFFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH 351 (815)
Q Consensus 276 ~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~ 351 (815)
.++.++..... . .-.-..++.+..... ....-|++|||+|.+. ....+.|+..|+... ..
T Consensus 69 d~~~~~~~~~~-~--~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~-----------~~a~NaLLK~LEepp--~~ 132 (162)
T PF13177_consen 69 DFIIIKPDKKK-K--SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT-----------EEAQNALLKTLEEPP--EN 132 (162)
T ss_dssp TEEEEETTTSS-S--SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------------HHHHHHHHHHHHSTT--TT
T ss_pred ceEEEeccccc-c--hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh-----------HHHHHHHHHHhcCCC--CC
Confidence 12233221110 0 112345666655532 2345699999999875 345688888888654 46
Q ss_pred EEEEEecCCCCCCCHHhhccCCcceEEEcC
Q 003503 352 VIVMGATNRPNSIDPALRRFGRFDREIDIG 381 (815)
Q Consensus 352 vivi~atn~~~~ld~al~r~~rf~~~i~i~ 381 (815)
+.+|.+|+.++.+-+.+++ |. ..+.+.
T Consensus 133 ~~fiL~t~~~~~il~TI~S--Rc-~~i~~~ 159 (162)
T PF13177_consen 133 TYFILITNNPSKILPTIRS--RC-QVIRFR 159 (162)
T ss_dssp EEEEEEES-GGGS-HHHHT--TS-EEEEE-
T ss_pred EEEEEEECChHHChHHHHh--hc-eEEecC
Confidence 7777888999999999998 65 334443
No 421
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.25 E-value=3e-06 Score=83.80 Aligned_cols=108 Identities=20% Similarity=0.368 Sum_probs=68.0
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC--eEEEEechhh-----------------------------------
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGA--FFFLINGPEI----------------------------------- 285 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~--~~i~v~~~~l----------------------------------- 285 (815)
++.+.+++.+.|+||+|||||||+|+|.+.-.. -.+.++|..+
T Consensus 22 ~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~la 101 (240)
T COG1126 22 SLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLA 101 (240)
T ss_pred ceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhh
Confidence 345678899999999999999999999864321 1244444211
Q ss_pred ----------------------------hhhhhch--hHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHH
Q 003503 286 ----------------------------MSKLAGE--SESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRI 335 (815)
Q Consensus 286 ----------------------------~~~~~g~--~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v 335 (815)
...|+.. ..++-|..+..|..-.|.++++||.-+. .+...
T Consensus 102 p~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSA----------LDPEl 171 (240)
T COG1126 102 PVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSA----------LDPEL 171 (240)
T ss_pred hHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCccc----------CCHHH
Confidence 0012211 2345677777888889999999995543 33455
Q ss_pred HHHHHHhhhcccCCCcEEEEEecCCC
Q 003503 336 VSQLLTLMDGLKSRAHVIVMGATNRP 361 (815)
Q Consensus 336 ~~~Ll~~ld~~~~~~~vivi~atn~~ 361 (815)
+...+..|..+...+-.+ +..|+..
T Consensus 172 v~EVL~vm~~LA~eGmTM-ivVTHEM 196 (240)
T COG1126 172 VGEVLDVMKDLAEEGMTM-IIVTHEM 196 (240)
T ss_pred HHHHHHHHHHHHHcCCeE-EEEechh
Confidence 666666666665554333 3355544
No 422
>PRK12377 putative replication protein; Provisional
Probab=98.25 E-value=6.2e-06 Score=85.88 Aligned_cols=70 Identities=24% Similarity=0.427 Sum_probs=47.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhhhchh--HHHHHHHHHHHHhcCCcEEEecccccc
Q 003503 249 PKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGES--ESNLRKAFEEAEKNAPSIIFIDELDSI 320 (815)
Q Consensus 249 ~~~VLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~--~~~l~~vf~~a~~~~p~il~iDEid~l 320 (815)
..+++|+||||||||+||.+|++.+ +..++.++.++++....... ......+++.. ....+|+|||+...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 4689999999999999999999887 45677777777665322110 00111233332 45679999999754
No 423
>PRK06526 transposase; Provisional
Probab=98.25 E-value=2.5e-06 Score=89.49 Aligned_cols=72 Identities=21% Similarity=0.440 Sum_probs=46.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhhhch-hHHHHHHHHHHHHhcCCcEEEeccccccc
Q 003503 248 PPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGE-SESNLRKAFEEAEKNAPSIIFIDELDSIA 321 (815)
Q Consensus 248 ~~~~VLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~-~~~~l~~vf~~a~~~~p~il~iDEid~l~ 321 (815)
.+.+++|+||||||||+|+.+|+..+ +..+..+...+++...... ....+...+... ..+.+|+|||++.+.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP 172 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC
Confidence 46789999999999999999998775 5555556665554432111 011122222222 346799999998764
No 424
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.25 E-value=2.2e-06 Score=95.45 Aligned_cols=154 Identities=27% Similarity=0.391 Sum_probs=97.0
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhh-
Q 003503 211 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIM- 286 (815)
Q Consensus 211 ~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~- 286 (815)
..+|++|.|-+..+.++.+.... .......|||+|.+||||..+|++|-+.. +.+|+.+||..+-
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr-----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKR-----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHh-----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 45788999999888887776653 22446789999999999999999998775 5689999996542
Q ss_pred --------hhhhchhHHH----HHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhccc-------
Q 003503 287 --------SKLAGESESN----LRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK------- 347 (815)
Q Consensus 287 --------~~~~g~~~~~----l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~------- 347 (815)
+...|..-.. -.-.|+.|..+ .||+|||..+. ..+...|+..+..-.
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgemp-----------l~LQaKLLRVLQEkei~rvG~t 375 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEMP-----------LPLQAKLLRVLQEKEIERVGGT 375 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccCC-----------HHHHHHHHHHHhhceEEecCCC
Confidence 2111211111 12345555443 89999998764 234455666554211
Q ss_pred --CCCcEEEEEecCCCCCCCHHhhccCCcc-------eEEEcCCCCHHHHHHHH
Q 003503 348 --SRAHVIVMGATNRPNSIDPALRRFGRFD-------REIDIGVPDEVGRLEIL 392 (815)
Q Consensus 348 --~~~~vivi~atn~~~~ld~al~r~~rf~-------~~i~i~~p~~~~R~~il 392 (815)
....|-||+|||+. +..++. -|+|- ..+.+..|...+|.+-+
T Consensus 376 ~~~~vDVRIIAATN~n--L~~~i~-~G~FReDLYYRLNV~~i~iPPLReR~eDI 426 (560)
T COG3829 376 KPIPVDVRIIAATNRN--LEKMIA-EGTFREDLYYRLNVIPITIPPLRERKEDI 426 (560)
T ss_pred CceeeEEEEEeccCcC--HHHHHh-cCcchhhheeeeceeeecCCCcccCcchH
Confidence 13468899999964 222222 23332 23456677777776443
No 425
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.25 E-value=2.1e-06 Score=92.29 Aligned_cols=109 Identities=18% Similarity=0.325 Sum_probs=68.9
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEechhhhh---------------------------------
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMS--------------------------------- 287 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~~--------------------------------- 287 (815)
++.+..++.+.|.||+||||||++|+||+..... -+.+++.++..
T Consensus 23 ~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~ 102 (338)
T COG3839 23 NLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKL 102 (338)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhh
Confidence 4456788999999999999999999999875422 13333322200
Q ss_pred --------------------------hhhc--hhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHH
Q 003503 288 --------------------------KLAG--ESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQL 339 (815)
Q Consensus 288 --------------------------~~~g--~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 339 (815)
..+. ...++-|..+..|.-..|.++++|| +.+..+.++..++
T Consensus 103 ~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DE----------PlSnLDa~lR~~m 172 (338)
T COG3839 103 RGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDE----------PLSNLDAKLRVLM 172 (338)
T ss_pred CCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecC----------chhHhhHHHHHHH
Confidence 0000 0123334555666667899999999 4455556666666
Q ss_pred HHhhhcccCCCcEEEEEecCCC
Q 003503 340 LTLMDGLKSRAHVIVMGATNRP 361 (815)
Q Consensus 340 l~~ld~~~~~~~vivi~atn~~ 361 (815)
...+..+..+....+|-.|++.
T Consensus 173 r~ei~~lh~~l~~T~IYVTHDq 194 (338)
T COG3839 173 RSEIKKLHERLGTTTIYVTHDQ 194 (338)
T ss_pred HHHHHHHHHhcCCcEEEEcCCH
Confidence 6666666665556666667654
No 426
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.24 E-value=3.2e-06 Score=85.23 Aligned_cols=110 Identities=21% Similarity=0.307 Sum_probs=72.2
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeE--EEEechhhhh---------------------------------
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF--FLINGPEIMS--------------------------------- 287 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~--i~v~~~~l~~--------------------------------- 287 (815)
++.+.+++.+.|+|++|||||||+|+|++...... +.++|..+..
T Consensus 27 S~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~ 106 (252)
T COG1124 27 SLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILS 106 (252)
T ss_pred eEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHh
Confidence 44568899999999999999999999998753221 3333311100
Q ss_pred ------------------------------hhhch--hHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHH
Q 003503 288 ------------------------------KLAGE--SESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRI 335 (815)
Q Consensus 288 ------------------------------~~~g~--~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v 335 (815)
.++.+ ..+.-|-.+..|..-.|.+|++||.- +..+-.+
T Consensus 107 Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEpt----------SaLD~si 176 (252)
T COG1124 107 EPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPT----------SALDVSV 176 (252)
T ss_pred hhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCch----------hhhcHHH
Confidence 01111 22344556667777789999999944 3344556
Q ss_pred HHHHHHhhhcccCCCcEEEEEecCCCC
Q 003503 336 VSQLLTLMDGLKSRAHVIVMGATNRPN 362 (815)
Q Consensus 336 ~~~Ll~~ld~~~~~~~vivi~atn~~~ 362 (815)
..++++++..++...+..++..+++..
T Consensus 177 Qa~IlnlL~~l~~~~~lt~l~IsHdl~ 203 (252)
T COG1124 177 QAQILNLLLELKKERGLTYLFISHDLA 203 (252)
T ss_pred HHHHHHHHHHHHHhcCceEEEEeCcHH
Confidence 777888887777766666666676543
No 427
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.24 E-value=1.6e-06 Score=93.83 Aligned_cols=110 Identities=21% Similarity=0.344 Sum_probs=71.6
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEechhhhh---------------------------------
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMS--------------------------------- 287 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~~--------------------------------- 287 (815)
++.+.+++.+.|.|||||||||++|+||+..... -+.++|.++.+
T Consensus 25 sl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~ 104 (352)
T COG3842 25 SLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKV 104 (352)
T ss_pred eeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhh
Confidence 4456788889999999999999999999864322 23333322210
Q ss_pred ---------------------------hhhc--hhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHH
Q 003503 288 ---------------------------KLAG--ESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 338 (815)
Q Consensus 288 ---------------------------~~~g--~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 338 (815)
.++. ...++-|..+..+....|.+|++|| +.+..+..+..+
T Consensus 105 ~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDE----------PlSaLD~kLR~~ 174 (352)
T COG3842 105 RKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDE----------PLSALDAKLREQ 174 (352)
T ss_pred cCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcC----------cccchhHHHHHH
Confidence 0000 0223446667777778899999999 444455566666
Q ss_pred HHHhhhcccCCCcEEEEEecCCCC
Q 003503 339 LLTLMDGLKSRAHVIVMGATNRPN 362 (815)
Q Consensus 339 Ll~~ld~~~~~~~vivi~atn~~~ 362 (815)
+...+..+.....+.+|..|++.+
T Consensus 175 mr~Elk~lq~~~giT~i~VTHDqe 198 (352)
T COG3842 175 MRKELKELQRELGITFVYVTHDQE 198 (352)
T ss_pred HHHHHHHHHHhcCCeEEEEECCHH
Confidence 666666666666777777777654
No 428
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.23 E-value=1.9e-06 Score=85.22 Aligned_cols=76 Identities=21% Similarity=0.115 Sum_probs=51.6
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEechhh--hhhhh-chhHHHHHHHHHHHHhcCCcEEEecccc
Q 003503 244 IGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEI--MSKLA-GESESNLRKAFEEAEKNAPSIIFIDELD 318 (815)
Q Consensus 244 l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l--~~~~~-g~~~~~l~~vf~~a~~~~p~il~iDEid 318 (815)
+.+.+++.+.|.||+|+|||||+++|++.+... -+.+++..+ ..... -...++-+..+..+....|.++++||-.
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPt 99 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 355788999999999999999999999986432 233443221 01110 1223455666777778899999999954
Q ss_pred c
Q 003503 319 S 319 (815)
Q Consensus 319 ~ 319 (815)
.
T Consensus 100 s 100 (177)
T cd03222 100 A 100 (177)
T ss_pred c
Confidence 3
No 429
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.23 E-value=3.9e-06 Score=97.25 Aligned_cols=131 Identities=18% Similarity=0.215 Sum_probs=80.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEEE----echhhhhhh-----hchhHHHHHHHHHHHHhcCCcEEEeccccc
Q 003503 249 PKGILLYGPPGSGKTLIARAVANETGAFFFLI----NGPEIMSKL-----AGESESNLRKAFEEAEKNAPSIIFIDELDS 319 (815)
Q Consensus 249 ~~~VLL~GppGtGKTtLar~la~~l~~~~i~v----~~~~l~~~~-----~g~~~~~l~~vf~~a~~~~p~il~iDEid~ 319 (815)
..+|||+|+||||||++|+++++..+...+.. ++..+.... .|+..-.-+. +.. ....+++|||++.
T Consensus 236 ~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~-l~~---A~~Gil~iDEi~~ 311 (509)
T smart00350 236 DINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGA-LVL---ADNGVCCIDEFDK 311 (509)
T ss_pred cceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCcc-EEe---cCCCEEEEechhh
Confidence 34899999999999999999999876443221 111111100 0100000000 111 1245999999998
Q ss_pred ccCCCCCchhHHHHHHHHHHHHhhhccc-----------CCCcEEEEEecCCCC-------------CCCHHhhccCCcc
Q 003503 320 IAPKREKTHGEVERRIVSQLLTLMDGLK-----------SRAHVIVMGATNRPN-------------SIDPALRRFGRFD 375 (815)
Q Consensus 320 l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~vivi~atn~~~-------------~ld~al~r~~rf~ 375 (815)
+.+. ....|+..|+.-. -..++.||+++|+.+ .+++++.+ ||+
T Consensus 312 l~~~-----------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFd 378 (509)
T smart00350 312 MDDS-----------DRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFD 378 (509)
T ss_pred CCHH-----------HHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--cee
Confidence 7532 3455666664321 124678889999763 47888887 998
Q ss_pred eEE-EcCCCCHHHHHHHHHHHh
Q 003503 376 REI-DIGVPDEVGRLEILRIHT 396 (815)
Q Consensus 376 ~~i-~i~~p~~~~R~~il~~~~ 396 (815)
..+ ....|+.+...+|.+..+
T Consensus 379 Li~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 379 LLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred eEEEecCCCChHHHHHHHHHHH
Confidence 765 457788888888887543
No 430
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.22 E-value=3.6e-06 Score=87.32 Aligned_cols=110 Identities=22% Similarity=0.377 Sum_probs=72.7
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEech---hhh-------------------------------
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGP---EIM------------------------------- 286 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~--~i~v~~~---~l~------------------------------- 286 (815)
++.+..++-+.|.||+|+|||||+|+||+..... .+.+++. +..
T Consensus 22 ~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFG 101 (345)
T COG1118 22 SLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFG 101 (345)
T ss_pred eeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhc
Confidence 3456788999999999999999999999976432 2333332 110
Q ss_pred ------------------------------hhhhc--hhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHH
Q 003503 287 ------------------------------SKLAG--ESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERR 334 (815)
Q Consensus 287 ------------------------------~~~~g--~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~ 334 (815)
..|+. ...++-+..+..|..-.|.+|++|| +.+..+..
T Consensus 102 l~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDE----------Pf~ALDa~ 171 (345)
T COG1118 102 LKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDE----------PFGALDAK 171 (345)
T ss_pred ccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecC----------CchhhhHH
Confidence 00111 1223445566667777899999999 45555566
Q ss_pred HHHHHHHhhhcccCCCcEEEEEecCCCC
Q 003503 335 IVSQLLTLMDGLKSRAHVIVMGATNRPN 362 (815)
Q Consensus 335 v~~~Ll~~ld~~~~~~~vivi~atn~~~ 362 (815)
+...|..++..+..+.++..+..|++.+
T Consensus 172 vr~~lr~wLr~~~~~~~~ttvfVTHD~e 199 (345)
T COG1118 172 VRKELRRWLRKLHDRLGVTTVFVTHDQE 199 (345)
T ss_pred HHHHHHHHHHHHHHhhCceEEEEeCCHH
Confidence 6666666666666676777777887654
No 431
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.21 E-value=5.1e-06 Score=90.73 Aligned_cols=146 Identities=23% Similarity=0.262 Sum_probs=83.7
Q ss_pred cChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhhh----
Q 003503 218 GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLA---- 290 (815)
Q Consensus 218 ~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~---- 290 (815)
.|.+..++++++.+..- ......|||+|++||||+++|++|.... +.+|+.++|..+.....
T Consensus 2 iG~S~~m~~~~~~~~~~-----------a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRL-----------APLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CcCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 45556666665555421 1335679999999999999999997665 36899999976532111
Q ss_pred -chhH-------HHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhccc---------CCCcEE
Q 003503 291 -GESE-------SNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK---------SRAHVI 353 (815)
Q Consensus 291 -g~~~-------~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~~~~vi 353 (815)
|... ......|+.+ ...+||||||+.+.. .+...|+..++.-. ....+-
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATASL-----------LVQEKLLRVIEYGEFERVGGSQTLQVDVR 136 (329)
T ss_pred hccccccccCcccccCCchhhC---CCCEEEeCChHhCCH-----------HHHHHHHHHHHcCcEEecCCCceeccceE
Confidence 1000 0001113333 346899999998753 24455666554321 123467
Q ss_pred EEEecCCC-------CCCCHHhhccCCcceEEEcCCCCHHHHHHH
Q 003503 354 VMGATNRP-------NSIDPALRRFGRFDREIDIGVPDEVGRLEI 391 (815)
Q Consensus 354 vi~atn~~-------~~ld~al~r~~rf~~~i~i~~p~~~~R~~i 391 (815)
+|++|+.. ..+.+.|.. |+. .+.+..|...+|.+-
T Consensus 137 iI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eD 178 (329)
T TIGR02974 137 LVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQED 178 (329)
T ss_pred EEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhh
Confidence 77777643 123333332 342 245667777776543
No 432
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.21 E-value=1.3e-06 Score=86.60 Aligned_cols=70 Identities=31% Similarity=0.550 Sum_probs=47.2
Q ss_pred CCcceEEeCCCCCChhHHHHHHHHHh---CCcEEEEeccchhhhccCc-cHHHHHHHHHHHhhCCCeEEEEecchh
Q 003503 521 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE-SEANVREIFDKARQSAPCVLFFDELDS 592 (815)
Q Consensus 521 ~~~gilL~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~~~g~-se~~i~~~F~~a~~~~p~ilfiDEid~ 592 (815)
...+++|+||+|||||+||.+++.++ +.....++.++++...-.. ........++..... .+|+|||+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~--dlLilDDlG~ 119 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRV--DLLILDDLGY 119 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTS--SCEEEETCTS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccc--cEecccccce
Confidence 34689999999999999999999875 5677888888887653221 111233445554433 5999999865
No 433
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=1.2e-05 Score=87.64 Aligned_cols=132 Identities=15% Similarity=0.249 Sum_probs=89.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCe-------------------------EEEEechhhh---------------
Q 003503 247 KPPKGILLYGPPGSGKTLIARAVANETGAF-------------------------FFLINGPEIM--------------- 286 (815)
Q Consensus 247 ~~~~~VLL~GppGtGKTtLar~la~~l~~~-------------------------~i~v~~~~l~--------------- 286 (815)
.-+..+||+||+|+||+++|+.+|+.+... +..+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 446789999999999999999999876331 1111110000
Q ss_pred ---hh----h-hchhHHHHHHHHHHHH----hcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEE
Q 003503 287 ---SK----L-AGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIV 354 (815)
Q Consensus 287 ---~~----~-~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viv 354 (815)
+. . ..-.-..++.+.+... .....|++||++|.+. ....+.|+..+++ ...++++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~-----------~~AaNaLLKtLEE--Pp~~t~f 165 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN-----------VAAANALLKTLEE--PPPGTVF 165 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC-----------HHHHHHHHHHhcC--CCcCcEE
Confidence 00 0 0012234565555432 2334599999999874 2355788888885 4457788
Q ss_pred EEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHH
Q 003503 355 MGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRI 394 (815)
Q Consensus 355 i~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~ 394 (815)
|.+|++++.+.|.+++ |+ ..+.+++|+.++..+.|..
T Consensus 166 iL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 166 LLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred EEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHH
Confidence 8899999999999998 76 6789999999888888764
No 434
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=3e-05 Score=83.83 Aligned_cols=127 Identities=17% Similarity=0.290 Sum_probs=87.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCe------------------------EEEEechhhhhhhhchhHHHHHHHHHHH
Q 003503 249 PKGILLYGPPGSGKTLIARAVANETGAF------------------------FFLINGPEIMSKLAGESESNLRKAFEEA 304 (815)
Q Consensus 249 ~~~VLL~GppGtGKTtLar~la~~l~~~------------------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a 304 (815)
+..+||+||+|+||+++|+.+|+.+-.. ++.+...+ ++ .-.-..+|.+.+..
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~--~I~id~iR~l~~~~ 99 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NK--DIGVDQVREINEKV 99 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CC--CCCHHHHHHHHHHH
Confidence 4579999999999999999999876321 12221100 00 11234556555443
Q ss_pred H----hcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEc
Q 003503 305 E----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDI 380 (815)
Q Consensus 305 ~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i 380 (815)
. .+..-|++||++|.+. ....+.|+..+++ ....+++|.+|+.++.+.|.+++ |. ..+.+
T Consensus 100 ~~~~~~g~~KV~iI~~a~~m~-----------~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC-~~~~~ 163 (325)
T PRK06871 100 SQHAQQGGNKVVYIQGAERLT-----------EAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RC-QTWLI 163 (325)
T ss_pred hhccccCCceEEEEechhhhC-----------HHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hc-eEEeC
Confidence 2 3344699999999875 2355778888876 34567778889999999999998 65 56789
Q ss_pred CCCCHHHHHHHHHHH
Q 003503 381 GVPDEVGRLEILRIH 395 (815)
Q Consensus 381 ~~p~~~~R~~il~~~ 395 (815)
.+|+.++-.+.|...
T Consensus 164 ~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 164 HPPEEQQALDWLQAQ 178 (325)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999888877777643
No 435
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.20 E-value=7.9e-06 Score=85.11 Aligned_cols=159 Identities=18% Similarity=0.180 Sum_probs=98.0
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCc------EEEEeccc
Q 003503 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------FISVKGPE 557 (815)
Q Consensus 484 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~------~i~v~~~~ 557 (815)
.-..+++.+.+++...+.+.... ..-.++|+|||||+|||+..-+.|..+-.+ ...++.++
T Consensus 37 P~~l~dv~~~~ei~st~~~~~~~-------------~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd 103 (360)
T KOG0990|consen 37 PPFLGIVIKQEPIWSTENRYSGM-------------PGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASD 103 (360)
T ss_pred CchhhhHhcCCchhhHHHHhccC-------------CCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccC
Confidence 34556667776666655554222 222379999999999999999999887543 11122222
Q ss_pred hhhhccCccHHHHHHHHHHHhh-------CCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEE
Q 003503 558 LLTMWFGESEANVREIFDKARQ-------SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFI 630 (815)
Q Consensus 558 l~~~~~g~se~~i~~~F~~a~~-------~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~v 630 (815)
-.+. ...+.-...|.-+++ ..+..+++||+|.+.. ...++|-+..+.+.. ++-+
T Consensus 104 ~rgi---d~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~--------------~AQnALRRviek~t~--n~rF 164 (360)
T KOG0990|consen 104 DRGI---DPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR--------------DAQNALRRVIEKYTA--NTRF 164 (360)
T ss_pred ccCC---cchHHHHHHHHhhccceeccccCceeEEEecchhHhhH--------------HHHHHHHHHHHHhcc--ceEE
Confidence 1111 112333455666653 3678999999999853 223333334444333 3344
Q ss_pred EEecCCCCCCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccCCC
Q 003503 631 IGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPI 677 (815)
Q Consensus 631 i~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~ 677 (815)
+.-.|.|..+-|++.. ||. .+.|.+.+...-...+..+++..+.
T Consensus 165 ~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~ 208 (360)
T KOG0990|consen 165 ATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQK 208 (360)
T ss_pred EEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchh
Confidence 4566999999999998 886 5667777766666666666655443
No 436
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.20 E-value=3e-06 Score=85.51 Aligned_cols=132 Identities=18% Similarity=0.313 Sum_probs=95.0
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEechhhhhhhhchhHHHHHHHHHHHHhcCCcEEEecccccc
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSI 320 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l 320 (815)
+|.+..+..+.|.||+||||||++++|.+.+... -+.+++.++.+...-+...+++.++|.. .-.|...+.++|...
T Consensus 21 ~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqi-gLFPh~Tv~eNIa~V 99 (309)
T COG1125 21 NLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQI-GLFPHLTVAENIATV 99 (309)
T ss_pred eEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhc-ccCCCccHHHHHHhh
Confidence 4567888999999999999999999999887654 4888998887766677788899999886 567888888888876
Q ss_pred cCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHH-hhccCCcceEEEcCCCCHHHHHHHHHHHhcCC
Q 003503 321 APKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA-LRRFGRFDREIDIGVPDEVGRLEILRIHTKNM 399 (815)
Q Consensus 321 ~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~a-l~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~ 399 (815)
..-.+........++ ..|+.+++ ++|. +.. |+..++.= ...+|.-+.++.....
T Consensus 100 P~L~~w~k~~i~~r~-~ELl~lvg-------------------L~p~~~~~--RyP~eLSG---GQQQRVGv~RALAadP 154 (309)
T COG1125 100 PKLLGWDKERIKKRA-DELLDLVG-------------------LDPSEYAD--RYPHELSG---GQQQRVGVARALAADP 154 (309)
T ss_pred hhhcCCCHHHHHHHH-HHHHHHhC-------------------CCHHHHhh--cCchhcCc---chhhHHHHHHHHhcCC
Confidence 655555555555553 44555442 4443 333 66555433 3788888888776554
Q ss_pred c
Q 003503 400 K 400 (815)
Q Consensus 400 ~ 400 (815)
+
T Consensus 155 ~ 155 (309)
T COG1125 155 P 155 (309)
T ss_pred C
Confidence 4
No 437
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.20 E-value=4.2e-06 Score=96.42 Aligned_cols=125 Identities=27% Similarity=0.391 Sum_probs=80.1
Q ss_pred CCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHH-----------hCCeEEEE
Q 003503 212 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANE-----------TGAFFFLI 280 (815)
Q Consensus 212 ~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~-----------l~~~~i~v 280 (815)
-.|+++.|.+..++++++.+... ......|||+|++||||+++|++|... .+.+|+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~-----------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLY-----------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 35788999999999888877531 123568999999999999999999876 35689999
Q ss_pred echhhhhhh-----hchhHH--------HHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhccc
Q 003503 281 NGPEIMSKL-----AGESES--------NLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK 347 (815)
Q Consensus 281 ~~~~l~~~~-----~g~~~~--------~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~ 347 (815)
||..+.... .|.... .-...|+.+. ...||||||+.+... ....|+..++.-.
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~~-----------~Q~kLl~~L~e~~ 350 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEMPLP-----------LQTRLLRVLEEKE 350 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhCCHH-----------HHHHHHhhhhcCe
Confidence 997653211 111000 0011333332 358999999987532 3455666654311
Q ss_pred ---------CCCcEEEEEecCCC
Q 003503 348 ---------SRAHVIVMGATNRP 361 (815)
Q Consensus 348 ---------~~~~vivi~atn~~ 361 (815)
....+-+|++|+..
T Consensus 351 ~~r~G~~~~~~~dvRiIaat~~~ 373 (538)
T PRK15424 351 VTRVGGHQPVPVDVRVISATHCD 373 (538)
T ss_pred EEecCCCceeccceEEEEecCCC
Confidence 11245677777644
No 438
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.19 E-value=2e-05 Score=81.43 Aligned_cols=180 Identities=30% Similarity=0.438 Sum_probs=92.6
Q ss_pred ChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe---EEEEec---h------hh-
Q 003503 219 GVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---FFLING---P------EI- 285 (815)
Q Consensus 219 G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~---~i~v~~---~------~l- 285 (815)
|-+++++.|.+.+.. .+...++|+||.|+|||+|++.+...+... .+.+.. . .+
T Consensus 3 gR~~el~~l~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 69 (234)
T PF01637_consen 3 GREKELEKLKELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFI 69 (234)
T ss_dssp S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHH
Confidence 556666777665542 245789999999999999999999987321 111111 0 00
Q ss_pred ------------hhhh-------------hchhHHHHHHHHHHHHhc-CCcEEEeccccccc-CCCCCchhHHHHHHHHH
Q 003503 286 ------------MSKL-------------AGESESNLRKAFEEAEKN-APSIIFIDELDSIA-PKREKTHGEVERRIVSQ 338 (815)
Q Consensus 286 ------------~~~~-------------~g~~~~~l~~vf~~a~~~-~p~il~iDEid~l~-~~~~~~~~~~~~~v~~~ 338 (815)
.... .......+..+++..... ...+|+|||++.+. .... ...+...
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~------~~~~~~~ 143 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE------DKDFLKS 143 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT------THHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc------hHHHHHH
Confidence 0000 011234456666665543 34799999999997 2211 1345566
Q ss_pred HHHhhhcccCCCcEEEEEecCCCCCC----CHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCC-cc-ccchhhhHHHh
Q 003503 339 LLTLMDGLKSRAHVIVMGATNRPNSI----DPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNM-KL-AEDVDLERVAK 412 (815)
Q Consensus 339 Ll~~ld~~~~~~~vivi~atn~~~~l----d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~-~l-~~~~~l~~la~ 412 (815)
|...++......++.+|.+....... +..-.-.+|+.. +.++..+.++..+++....+.. .+ .++.++..+..
T Consensus 144 l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~ 222 (234)
T PF01637_consen 144 LRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYS 222 (234)
T ss_dssp HHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHH
T ss_pred HHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHH
Confidence 66666664444444444333321100 000112356766 8999999999999998766554 12 24556777777
Q ss_pred hcCCCc
Q 003503 413 DTHGYV 418 (815)
Q Consensus 413 ~t~g~~ 418 (815)
.+.|+.
T Consensus 223 ~~gG~P 228 (234)
T PF01637_consen 223 LTGGNP 228 (234)
T ss_dssp HHTT-H
T ss_pred HhCCCH
Confidence 777754
No 439
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.19 E-value=6.1e-06 Score=79.87 Aligned_cols=111 Identities=23% Similarity=0.412 Sum_probs=71.0
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEechhhh----------------------------------
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIM---------------------------------- 286 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~---------------------------------- 286 (815)
++.+.+++.+.|+||+|+|||||+|.|..+.... -+.+++.++.
T Consensus 22 s~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA 101 (223)
T COG2884 22 SFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVA 101 (223)
T ss_pred eEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhh
Confidence 4567889999999999999999999998875322 1333322210
Q ss_pred ------h--------------hhhc------------hhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHH
Q 003503 287 ------S--------------KLAG------------ESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERR 334 (815)
Q Consensus 287 ------~--------------~~~g------------~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~ 334 (815)
+ .++| ...++-|..+..|.-+.|.+|+-|| +.++.+..
T Consensus 102 ~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADE----------PTGNLDp~ 171 (223)
T COG2884 102 LPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADE----------PTGNLDPD 171 (223)
T ss_pred hhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecC----------CCCCCChH
Confidence 0 0000 1234456667777778999999998 44555555
Q ss_pred HHHHHHHhhhcccCCCcEEEEEecCCCCCC
Q 003503 335 IVSQLLTLMDGLKSRAHVIVMGATNRPNSI 364 (815)
Q Consensus 335 v~~~Ll~~ld~~~~~~~vivi~atn~~~~l 364 (815)
....++.++..+...+ ..|+.+|++.+-+
T Consensus 172 ~s~~im~lfeeinr~G-tTVl~ATHd~~lv 200 (223)
T COG2884 172 LSWEIMRLFEEINRLG-TTVLMATHDLELV 200 (223)
T ss_pred HHHHHHHHHHHHhhcC-cEEEEEeccHHHH
Confidence 6666777777776544 4455566655433
No 440
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.19 E-value=8.1e-06 Score=95.87 Aligned_cols=134 Identities=19% Similarity=0.295 Sum_probs=84.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCC--eEEEEechhhhhhhhchhH--HHHH---HHHHH--HHhcCCcEEEecccccc
Q 003503 250 KGILLYGPPGSGKTLIARAVANETGA--FFFLINGPEIMSKLAGESE--SNLR---KAFEE--AEKNAPSIIFIDELDSI 320 (815)
Q Consensus 250 ~~VLL~GppGtGKTtLar~la~~l~~--~~i~v~~~~l~~~~~g~~~--~~l~---~vf~~--a~~~~p~il~iDEid~l 320 (815)
.+|||.|+||||||+++++|+..++. +|+.++.........|... ..+. ..|+. .......+||+||++.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 47999999999999999999998764 4777764222222222210 0000 00110 00112259999999987
Q ss_pred cCCCCCchhHHHHHHHHHHHHhhhccc-----------CCCcEEEEEecCCCC---CCCHHhhccCCcceEEEcC-CCCH
Q 003503 321 APKREKTHGEVERRIVSQLLTLMDGLK-----------SRAHVIVMGATNRPN---SIDPALRRFGRFDREIDIG-VPDE 385 (815)
Q Consensus 321 ~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~vivi~atn~~~---~ld~al~r~~rf~~~i~i~-~p~~ 385 (815)
.+ .+...|+..|+.-. ....+.+|+++|..+ .+.+++.. ||...+.+. .|..
T Consensus 97 ~~-----------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~~ 163 (589)
T TIGR02031 97 DD-----------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVASQ 163 (589)
T ss_pred CH-----------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCCH
Confidence 53 35567777775321 123578888888765 67888877 888776655 4567
Q ss_pred HHHHHHHHHHh
Q 003503 386 VGRLEILRIHT 396 (815)
Q Consensus 386 ~~R~~il~~~~ 396 (815)
.+|.+|++...
T Consensus 164 ~er~eil~~~~ 174 (589)
T TIGR02031 164 DLRVEIVRRER 174 (589)
T ss_pred HHHHHHHHHHH
Confidence 77888887644
No 441
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.19 E-value=3e-06 Score=87.68 Aligned_cols=161 Identities=20% Similarity=0.374 Sum_probs=88.2
Q ss_pred CcceEEeCCCCCChhHHHHHHHHHhCCc-E--EEEec---c------ch-------------hhhc-------------c
Q 003503 522 SKGVLFYGPPGCGKTLLAKAIANECQAN-F--ISVKG---P------EL-------------LTMW-------------F 563 (815)
Q Consensus 522 ~~gilL~GppGtGKT~lakala~~~~~~-~--i~v~~---~------~l-------------~~~~-------------~ 563 (815)
...++|+||.|+|||+|++.+....... . +.+.. . .+ .... .
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 4569999999999999999999988431 1 11111 0 00 0000 0
Q ss_pred CccHHHHHHHHHHHhhCC-CeEEEEecchhhh-hccCCCCCCCCchHHHHHHHHHhccccCCCCCcE-EEEEecCC--C-
Q 003503 564 GESEANVREIFDKARQSA-PCVLFFDELDSIA-TQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTV-FIIGATNR--P- 637 (815)
Q Consensus 564 g~se~~i~~~F~~a~~~~-p~ilfiDEid~l~-~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v-~vi~aTn~--~- 637 (815)
......+..+++...... ..||+|||++.+. ..+ .....+..|...++......++ +|+++++. .
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~ 170 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE---------EDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLME 170 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT---------TTHHHHHHHHHHHHH----TTEEEEEEESSHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc---------chHHHHHHHHHHHhhccccCCceEEEECCchHHHH
Confidence 112345666666665543 3899999999997 211 1245666777777764444444 44444431 1
Q ss_pred C--CCCccccCCCCCcceeeccCCCHHHHHHHHHHHhccC-CC-CCcccHHHHHHHcCCCC
Q 003503 638 D--IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS-PI-SPDVDLSALARYTHGFS 694 (815)
Q Consensus 638 ~--~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~-~~-~~~~~~~~la~~t~g~s 694 (815)
+ .-+..+. +|+.. +++++.+.++..++++..++.. .+ .++.+++.+...+.|..
T Consensus 171 ~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 171 EFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp HTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-H
T ss_pred HhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCH
Confidence 1 1123333 48887 9999999999999999987665 11 24566788888777754
No 442
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.18 E-value=8.6e-06 Score=88.48 Aligned_cols=161 Identities=24% Similarity=0.379 Sum_probs=103.4
Q ss_pred CcccccccccchhhhhhhccccCCCCChhhhhhhcCCCCcceEEeCCCCCChhHHHHHHHHHhCCcEEEEec--------
Q 003503 484 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKG-------- 555 (815)
Q Consensus 484 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~lakala~~~~~~~i~v~~-------- 555 (815)
++.+.-+.|++..|..|--.... +.-.|+|+.|+.|+||||++++|+..+.---+...+
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~-------------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVD-------------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhcc-------------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 35567788888888776332111 123479999999999999999999998432211111
Q ss_pred c------------------------chhhhccCccHHH----------HH---HHHHH---HhhCCCeEEEEecchhhhh
Q 003503 556 P------------------------ELLTMWFGESEAN----------VR---EIFDK---ARQSAPCVLFFDELDSIAT 595 (815)
Q Consensus 556 ~------------------------~l~~~~~g~se~~----------i~---~~F~~---a~~~~p~ilfiDEid~l~~ 595 (815)
+ .+...-.|.++.. ++ +.|+- |+.+ -.|+++||+..|.
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An-RGIlYvDEvnlL~- 157 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN-RGILYVDEVNLLD- 157 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc-CCEEEEecccccc-
Confidence 0 1112223344431 11 12211 2222 2599999998773
Q ss_pred ccCCCCCCCCchHHHHHHHHHhccccC-----------CCCCcEEEEEecCCCC-CCCccccCCCCCcceeeccCC-CHH
Q 003503 596 QRGSSTGDAGGAADRVLNQLLTEMDGM-----------NAKKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLP-DEA 662 (815)
Q Consensus 596 ~r~~~~~~~~~~~~~vl~~lL~~ld~~-----------~~~~~v~vi~aTn~~~-~ld~allr~gRf~~~i~~~~p-~~~ 662 (815)
+.+++.||..+... ...-++++|||+|.-+ .|-|-|+- ||...|.+..| +.+
T Consensus 158 -------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~ 222 (423)
T COG1239 158 -------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLE 222 (423)
T ss_pred -------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHH
Confidence 45777777766542 1234789999999753 47788887 99999988755 678
Q ss_pred HHHHHHHHHhcc
Q 003503 663 SRLQIFKACLRK 674 (815)
Q Consensus 663 ~r~~Il~~~l~~ 674 (815)
+|.+|.++.+.-
T Consensus 223 ~rv~Ii~r~~~f 234 (423)
T COG1239 223 ERVEIIRRRLAF 234 (423)
T ss_pred HHHHHHHHHHHh
Confidence 899999887754
No 443
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.18 E-value=2.6e-05 Score=94.03 Aligned_cols=150 Identities=26% Similarity=0.390 Sum_probs=90.9
Q ss_pred CCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhh
Q 003503 212 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSK 288 (815)
Q Consensus 212 ~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~ 288 (815)
..|+++.|.+..++.+.+.+..- ......|||+|++|||||++|++|.... +.+++.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~-----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMV-----------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 46778999988888887666531 1235689999999999999999998765 468999999765321
Q ss_pred -----hhch--------hHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhccc--------
Q 003503 289 -----LAGE--------SESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK-------- 347 (815)
Q Consensus 289 -----~~g~--------~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-------- 347 (815)
..|. .....+ .|+.+ ...+||||||+.+.. .+...|+..++.-.
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g-~le~a---~~GtL~Ldei~~L~~-----------~~Q~~L~~~l~~~~~~~~g~~~ 506 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIG-RFELA---DKSSLFLDEVGDMPL-----------ELQPKLLRVLQEQEFERLGSNK 506 (686)
T ss_pred HhhhhhcCcccccccccccchhh-HHHhc---CCCeEEEechhhCCH-----------HHHHHHHHHHHhCCEEeCCCCC
Confidence 1111 111111 23333 346999999998753 24455666554321
Q ss_pred -CCCcEEEEEecCCCC-------CCCHHhhccCCcceEEEcCCCCHHHHHH
Q 003503 348 -SRAHVIVMGATNRPN-------SIDPALRRFGRFDREIDIGVPDEVGRLE 390 (815)
Q Consensus 348 -~~~~vivi~atn~~~-------~ld~al~r~~rf~~~i~i~~p~~~~R~~ 390 (815)
....+-+|++|+..- .+...+-. |+ ..+.+..|...+|.+
T Consensus 507 ~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l-~~~~i~lPpLreR~~ 554 (686)
T PRK15429 507 IIQTDVRLIAATNRDLKKMVADREFRSDLYY--RL-NVFPIHLPPLRERPE 554 (686)
T ss_pred cccceEEEEEeCCCCHHHHHHcCcccHHHHh--cc-CeeEEeCCChhhhHh
Confidence 123566777776541 11222211 22 134567777777764
No 444
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.18 E-value=1.3e-05 Score=84.14 Aligned_cols=73 Identities=29% Similarity=0.534 Sum_probs=50.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhhhchhHH-HHHHHHHHHHhcCCcEEEeccccccc
Q 003503 248 PPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGESES-NLRKAFEEAEKNAPSIIFIDELDSIA 321 (815)
Q Consensus 248 ~~~~VLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~~~-~l~~vf~~a~~~~p~il~iDEid~l~ 321 (815)
.+.+++|+||||+|||+||-+|+.++ |..++.++.++++......... ....-+... -....+|+|||+....
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~-l~~~dlLIiDDlG~~~ 180 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE-LKKVDLLIIDDIGYEP 180 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-hhcCCEEEEecccCcc
Confidence 57899999999999999999999886 6778888888887643321111 111111221 1234699999987653
No 445
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.18 E-value=6.3e-06 Score=90.07 Aligned_cols=149 Identities=23% Similarity=0.285 Sum_probs=88.4
Q ss_pred cccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC---CeEEEEechhhhhh--
Q 003503 214 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG---AFFFLINGPEIMSK-- 288 (815)
Q Consensus 214 ~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~---~~~i~v~~~~l~~~-- 288 (815)
++++.|.+..++.+++.+..- ...+..|||+|++||||+++|++|..... .+++.++|..+...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~-----------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRL-----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred cCccEECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 456788888888887776531 13356899999999999999999986653 57999999765321
Q ss_pred ---hhchhH-------HHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhccc--C-------C
Q 003503 289 ---LAGESE-------SNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK--S-------R 349 (815)
Q Consensus 289 ---~~g~~~-------~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--~-------~ 349 (815)
..|... ......++.+ ....|||||++.+.. .+...|+..++.-. . .
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L~~-----------~~Q~~L~~~l~~~~~~~~g~~~~~~ 139 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPM-----------LVQEKLLRVIEYGELERVGGSQPLQ 139 (326)
T ss_pred HHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhCCH-----------HHHHHHHHHHhcCcEEeCCCCceee
Confidence 111100 0001122222 345899999998853 23455666554311 0 1
Q ss_pred CcEEEEEecCCC-------CCCCHHhhccCCcceEEEcCCCCHHHHHH
Q 003503 350 AHVIVMGATNRP-------NSIDPALRRFGRFDREIDIGVPDEVGRLE 390 (815)
Q Consensus 350 ~~vivi~atn~~-------~~ld~al~r~~rf~~~i~i~~p~~~~R~~ 390 (815)
..+-+|++++.. ..+.+.|.. ||. .+.+..|...+|.+
T Consensus 140 ~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~e 184 (326)
T PRK11608 140 VNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQS 184 (326)
T ss_pred ccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhh
Confidence 246677766543 233444443 442 23455666666654
No 446
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.18 E-value=9.5e-06 Score=76.04 Aligned_cols=97 Identities=25% Similarity=0.390 Sum_probs=58.5
Q ss_pred cceEEeCCCCCChhHHHHHHHHHh--------CCcEEEEeccchhhh----------c----cC-cc-HHHHHHHHHHHh
Q 003503 523 KGVLFYGPPGCGKTLLAKAIANEC--------QANFISVKGPELLTM----------W----FG-ES-EANVREIFDKAR 578 (815)
Q Consensus 523 ~gilL~GppGtGKT~lakala~~~--------~~~~i~v~~~~l~~~----------~----~g-~s-e~~i~~~F~~a~ 578 (815)
+.++++||+|+|||++++.++... ..+++.++.+...+. + .+ .+ ......+.+...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 458999999999999999999987 566777765543310 0 01 12 223344444555
Q ss_pred hCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEec
Q 003503 579 QSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGAT 634 (815)
Q Consensus 579 ~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aT 634 (815)
.....+|+|||+|.+. . ..+++.+...++ ...=+++++|+.
T Consensus 85 ~~~~~~lviDe~~~l~-~------------~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF-S------------DEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HCTEEEEEEETTHHHH-T------------HHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred hcCCeEEEEeChHhcC-C------------HHHHHHHHHHHh--CCCCeEEEEECh
Confidence 5554699999999974 1 345666655555 222245555554
No 447
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.17 E-value=1.8e-05 Score=91.90 Aligned_cols=150 Identities=25% Similarity=0.361 Sum_probs=90.9
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhh
Q 003503 213 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKL 289 (815)
Q Consensus 213 ~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~ 289 (815)
.+.++.|.+..++++.+.+..- ...+..|||+|++||||+++|++|.... +.+++.+||..+....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~-----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV-----------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 5677999999988888777641 1336689999999999999999998875 4689999997663211
Q ss_pred -----hchhHH-------HHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhccc---------C
Q 003503 290 -----AGESES-------NLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK---------S 348 (815)
Q Consensus 290 -----~g~~~~-------~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~ 348 (815)
.|.... .....|+.+ ....||||||+.+.. .+...|+..++.-. .
T Consensus 254 ~e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~ 319 (509)
T PRK05022 254 AESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELPL-----------ALQAKLLRVLQYGEIQRVGSDRSL 319 (509)
T ss_pred HHHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCCH-----------HHHHHHHHHHhcCCEeeCCCCcce
Confidence 110000 000123333 345899999998853 23455555554321 1
Q ss_pred CCcEEEEEecCCCC-------CCCHHhhccCCcceEEEcCCCCHHHHHH
Q 003503 349 RAHVIVMGATNRPN-------SIDPALRRFGRFDREIDIGVPDEVGRLE 390 (815)
Q Consensus 349 ~~~vivi~atn~~~-------~ld~al~r~~rf~~~i~i~~p~~~~R~~ 390 (815)
...+-+|++|+..- .+.+.|-. |+. .+.+..|...+|.+
T Consensus 320 ~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~e 365 (509)
T PRK05022 320 RVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGD 365 (509)
T ss_pred ecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchh
Confidence 13567777776541 22333322 232 24566676666654
No 448
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.17 E-value=2.7e-07 Score=95.10 Aligned_cols=98 Identities=21% Similarity=0.262 Sum_probs=78.0
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEechhhhh-hhhchhHHHHHHHHHHHHhcCCcEEEeccccc
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMS-KLAGESESNLRKAFEEAEKNAPSIIFIDELDS 319 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~~-~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~ 319 (815)
++.+.+++.++|+|++|||||||++.+++.+... .+.+++..+.. ....+..+++..+||++..+.-+-.+.||+.+
T Consensus 24 ~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evaf 103 (235)
T COG1122 24 SLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAF 103 (235)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhh
Confidence 4466788999999999999999999999988654 35667665542 44455667788899999998877889999999
Q ss_pred ccCCCCCchhHHHHHHHHHHH
Q 003503 320 IAPKREKTHGEVERRIVSQLL 340 (815)
Q Consensus 320 l~~~~~~~~~~~~~~v~~~Ll 340 (815)
.+.+.+.+..++..++...|.
T Consensus 104 g~~n~g~~~~e~~~rv~~~l~ 124 (235)
T COG1122 104 GLENLGLPREEIEERVAEALE 124 (235)
T ss_pred chhhcCCCHHHHHHHHHHHHH
Confidence 999998887777777766553
No 449
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.17 E-value=5.3e-06 Score=90.93 Aligned_cols=126 Identities=23% Similarity=0.369 Sum_probs=83.6
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----CCeEEEEechhh
Q 003503 210 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----GAFFFLINGPEI 285 (815)
Q Consensus 210 ~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l----~~~~i~v~~~~l 285 (815)
....+.++.|-+...+++++.+.. + ...+.+|||+|++||||+.+|++|.... ..+|+.+||..+
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~---~--------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKA---Y--------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHh---h--------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence 345677899999988888877764 1 1346789999999999999999987443 568999999776
Q ss_pred hhhhhc-----h-------hHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhccc-----C
Q 003503 286 MSKLAG-----E-------SESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----S 348 (815)
Q Consensus 286 ~~~~~g-----~-------~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----~ 348 (815)
...... . ....-.-+|+.|.. .+||+|||+.+.+. ....|+..++.-. .
T Consensus 142 ~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~G---GtLfLDEI~~LP~~-----------~Q~kLl~~le~g~~~rvG~ 207 (403)
T COG1221 142 SENLQEAELFGHEKGAFTGAQGGKAGLFEQANG---GTLFLDEIHRLPPE-----------GQEKLLRVLEEGEYRRVGG 207 (403)
T ss_pred CcCHHHHHHhccccceeecccCCcCchheecCC---CEEehhhhhhCCHh-----------HHHHHHHHHHcCceEecCC
Confidence 432111 0 11111234444433 48999999988643 3466777776421 1
Q ss_pred ----CCcEEEEEecCC
Q 003503 349 ----RAHVIVMGATNR 360 (815)
Q Consensus 349 ----~~~vivi~atn~ 360 (815)
...|-+|++|+.
T Consensus 208 ~~~~~~dVRli~AT~~ 223 (403)
T COG1221 208 SQPRPVDVRLICATTE 223 (403)
T ss_pred CCCcCCCceeeecccc
Confidence 235777777763
No 450
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.16 E-value=3.7e-06 Score=88.19 Aligned_cols=68 Identities=28% Similarity=0.488 Sum_probs=48.6
Q ss_pred CCcceEEeCCCCCChhHHHHHHHHHh---CCcEEEEeccchhhhccC-----ccHHHHHHHHHHHhhCCCeEEEEecchh
Q 003503 521 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFG-----ESEANVREIFDKARQSAPCVLFFDELDS 592 (815)
Q Consensus 521 ~~~gilL~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~~~g-----~se~~i~~~F~~a~~~~p~ilfiDEid~ 592 (815)
...+++|+||||+|||+||-|++.++ +..++.+..++++...-. ..+..+ ...... ..+|+|||+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l---~~~l~~--~dlLIiDDlG~ 178 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKL---LRELKK--VDLLIIDDIGY 178 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHH---HHHhhc--CCEEEEecccC
Confidence 45689999999999999999999987 566788888888764321 222222 221222 35999999977
Q ss_pred h
Q 003503 593 I 593 (815)
Q Consensus 593 l 593 (815)
.
T Consensus 179 ~ 179 (254)
T COG1484 179 E 179 (254)
T ss_pred c
Confidence 5
No 451
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.16 E-value=9.5e-06 Score=95.03 Aligned_cols=63 Identities=25% Similarity=0.348 Sum_probs=51.3
Q ss_pred CCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhh
Q 003503 212 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEI 285 (815)
Q Consensus 212 ~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l 285 (815)
..++++.|.+..++++.+.+.... .....|||+|++||||+++|++|.... +.+|+.++|..+
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~ 258 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVA-----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAAL 258 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCC
Confidence 467889999999888877765311 345689999999999999999998875 468999999765
No 452
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.16 E-value=1.6e-05 Score=77.10 Aligned_cols=111 Identities=22% Similarity=0.246 Sum_probs=63.2
Q ss_pred eEEeCCCCCChhHHHHHHHHHh---CCcEEEEeccchhhh----------------------ccCc--cHHHHHHHHHHH
Q 003503 525 VLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM----------------------WFGE--SEANVREIFDKA 577 (815)
Q Consensus 525 ilL~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~----------------------~~g~--se~~i~~~F~~a 577 (815)
++|+||||+|||+++..++... +.+.+.+........ +... ........+..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999999886 345555544322210 0011 111122334556
Q ss_pred hhCCCeEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCC
Q 003503 578 RQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDI 639 (815)
Q Consensus 578 ~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ 639 (815)
....|.++++||+..+................+.+..++..+. ..++.+|++++.+..
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~~~ 139 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR----KGGVTVIFTLQVPSG 139 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh----cCCceEEEEEecCCc
Confidence 6778899999999998754211000112233444445544443 235666666665543
No 453
>PRK06921 hypothetical protein; Provisional
Probab=98.16 E-value=1.2e-05 Score=85.15 Aligned_cols=69 Identities=30% Similarity=0.396 Sum_probs=45.4
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh----CCeEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCcEEEeccccc
Q 003503 248 PPKGILLYGPPGSGKTLIARAVANET----GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDS 319 (815)
Q Consensus 248 ~~~~VLL~GppGtGKTtLar~la~~l----~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~ 319 (815)
...+++|+|++|+|||+|+.++++++ +..++.+...+++....... ......++.. ....+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEecccc
Confidence 46789999999999999999999876 45567777655544321111 1111222222 3467999999954
No 454
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.14 E-value=3.6e-06 Score=83.95 Aligned_cols=111 Identities=21% Similarity=0.283 Sum_probs=64.9
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEechhhhh---------------------------hhhc--
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMS---------------------------KLAG-- 291 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~~---------------------------~~~g-- 291 (815)
++.+.++..++|.||+|+|||||+++|++.+... -+.+++.++.. ....
T Consensus 19 ~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 19 SLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 3456789999999999999999999999986432 23444422210 0000
Q ss_pred hhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCC
Q 003503 292 ESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNS 363 (815)
Q Consensus 292 ~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ 363 (815)
...++-+..+..+....|.++++||-..-+ +......+...+..+.......+|.++++++.
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP~~~L----------D~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~ 160 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEPTSHL----------DIAHQIELLELLRRLARERGKTVVMVLHDLNL 160 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCC----------CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 012334555666667789999999954332 22223344444444433212345556776553
No 455
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.13 E-value=1.3e-05 Score=87.05 Aligned_cols=99 Identities=22% Similarity=0.401 Sum_probs=60.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhhhch---hHHHHHHHHHHHHhcCCcEEEecccccccC
Q 003503 249 PKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGE---SESNLRKAFEEAEKNAPSIIFIDELDSIAP 322 (815)
Q Consensus 249 ~~~VLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~---~~~~l~~vf~~a~~~~p~il~iDEid~l~~ 322 (815)
..+++|+||+|+|||+|+.++|.++ +..++.++..+++...... ........++.. ....+|+|||+.....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e~~ 260 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTEKI 260 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCCCC
Confidence 4789999999999999999999986 6678888887776543211 001111113332 2457999999876532
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecC
Q 003503 323 KREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATN 359 (815)
Q Consensus 323 ~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn 359 (815)
+ ......|..+++.......-+|| +||
T Consensus 261 t---------~~~~~~Lf~iin~R~~~~k~tIi-TSN 287 (329)
T PRK06835 261 T---------EFSKSELFNLINKRLLRQKKMII-STN 287 (329)
T ss_pred C---------HHHHHHHHHHHHHHHHCCCCEEE-ECC
Confidence 2 12235566666554333333444 455
No 456
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.13 E-value=4e-06 Score=80.27 Aligned_cols=77 Identities=19% Similarity=0.283 Sum_probs=51.2
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeE--EEEechhhhhhhh-chhHHHHHHHHHHHHhcCCcEEEeccccc
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF--FLINGPEIMSKLA-GESESNLRKAFEEAEKNAPSIIFIDELDS 319 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~--i~v~~~~l~~~~~-g~~~~~l~~vf~~a~~~~p~il~iDEid~ 319 (815)
++.+.+++.+.|.||+|+|||||+++|++.+...- +.+++........ -...+.-+..+..+....|.++++||-..
T Consensus 20 ~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 20 SLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 34567899999999999999999999999864321 3333321111000 11234455556777788999999999544
No 457
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=3.7e-05 Score=83.98 Aligned_cols=127 Identities=14% Similarity=0.196 Sum_probs=86.9
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCC------------------------eEEEEechhhhhhhhchhHHHHHHHHHH
Q 003503 248 PPKGILLYGPPGSGKTLIARAVANETGA------------------------FFFLINGPEIMSKLAGESESNLRKAFEE 303 (815)
Q Consensus 248 ~~~~VLL~GppGtGKTtLar~la~~l~~------------------------~~i~v~~~~l~~~~~g~~~~~l~~vf~~ 303 (815)
-+..+||+||+|+||+++|+++|+.+-. .+..+.... .+ ..-.-..+|.+.+.
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~--~~I~idqiR~l~~~ 99 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK-GK--SSLGVDAVREVTEK 99 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc-cc--ccCCHHHHHHHHHH
Confidence 3557999999999999999999987622 112221100 00 00123345555544
Q ss_pred H----HhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEE
Q 003503 304 A----EKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREID 379 (815)
Q Consensus 304 a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~ 379 (815)
. ..+..-|++||++|.+. ....+.|+..+++- ..++++|..|+.++.+.|.+++ |.. .+.
T Consensus 100 ~~~~~~~g~~kV~iI~~ae~m~-----------~~AaNaLLKtLEEP--p~~t~fiL~t~~~~~lLpTIrS--RCq-~~~ 163 (334)
T PRK07993 100 LYEHARLGGAKVVWLPDAALLT-----------DAAANALLKTLEEP--PENTWFFLACREPARLLATLRS--RCR-LHY 163 (334)
T ss_pred HhhccccCCceEEEEcchHhhC-----------HHHHHHHHHHhcCC--CCCeEEEEEECChhhChHHHHh--ccc-ccc
Confidence 3 33455699999999875 33567888888863 4567888889999999999998 664 578
Q ss_pred cCCCCHHHHHHHHH
Q 003503 380 IGVPDEVGRLEILR 393 (815)
Q Consensus 380 i~~p~~~~R~~il~ 393 (815)
++.|+.+.-.+.|.
T Consensus 164 ~~~~~~~~~~~~L~ 177 (334)
T PRK07993 164 LAPPPEQYALTWLS 177 (334)
T ss_pred CCCCCHHHHHHHHH
Confidence 99998887776664
No 458
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.13 E-value=7e-06 Score=85.31 Aligned_cols=70 Identities=27% Similarity=0.497 Sum_probs=49.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhhhch---hHHHHHHHHHHHHhcCCcEEEeccccccc
Q 003503 250 KGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGE---SESNLRKAFEEAEKNAPSIIFIDELDSIA 321 (815)
Q Consensus 250 ~~VLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~---~~~~l~~vf~~a~~~~p~il~iDEid~l~ 321 (815)
.+++|+|+||||||+|+.+|+..+ +..++.++..++....... .......+++.. ...++|+|||++...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l--~~~dlLvIDDig~~~ 175 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDL--SNVDLLVIDEIGVQT 175 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHh--ccCCEEEEeCCCCCC
Confidence 589999999999999999999987 6677888877776533221 111223344443 256799999998753
No 459
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.12 E-value=5.7e-06 Score=81.72 Aligned_cols=110 Identities=24% Similarity=0.355 Sum_probs=66.2
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEechhhhh-------h---hh---------------chhHH
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMS-------K---LA---------------GESES 295 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~~-------~---~~---------------g~~~~ 295 (815)
++.+.++..+.|.||+|+|||||+++|++.+... -+.+++..+.. . +. -...+
T Consensus 22 ~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~ 101 (171)
T cd03228 22 SLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQ 101 (171)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHH
Confidence 3456789999999999999999999999986432 13344422110 0 00 01123
Q ss_pred HHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCC
Q 003503 296 NLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI 364 (815)
Q Consensus 296 ~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~l 364 (815)
+-+..+..+....|.++++||-..-+ +......+..++..+.. . ..++.+|+.++.+
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gL----------D~~~~~~l~~~l~~~~~-~-~tii~~sh~~~~~ 158 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSAL----------DPETEALILEALRALAK-G-KTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCC----------CHHHHHHHHHHHHHhcC-C-CEEEEEecCHHHH
Confidence 34455666777889999999944332 22233444455544433 2 4555667776544
No 460
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.12 E-value=1e-05 Score=92.17 Aligned_cols=125 Identities=23% Similarity=0.371 Sum_probs=74.8
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCCeE--EEEechhhhh---h-----------------------hhchhHHHH
Q 003503 246 VKPPKGILLYGPPGSGKTLIARAVANETGAFF--FLINGPEIMS---K-----------------------LAGESESNL 297 (815)
Q Consensus 246 i~~~~~VLL~GppGtGKTtLar~la~~l~~~~--i~v~~~~l~~---~-----------------------~~g~~~~~l 297 (815)
+..+.+++|+||||||||+|++.+++.+...- ..+.+..+.+ . ..|.....-
T Consensus 207 a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~ 286 (506)
T PRK09862 207 AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPG 286 (506)
T ss_pred ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceeh
Confidence 45678899999999999999999998875321 1122222111 0 001000000
Q ss_pred HHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhccc-----------CCCcEEEEEecCCCC----
Q 003503 298 RKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----------SRAHVIVMGATNRPN---- 362 (815)
Q Consensus 298 ~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~vivi~atn~~~---- 362 (815)
...+..+. ..+||+||++.+. ..+...|++.|+.-. ...++.+|+++|+..
T Consensus 287 pG~l~~A~---gGvLfLDEi~e~~-----------~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~ 352 (506)
T PRK09862 287 PGEISLAH---NGVLFLDELPEFE-----------RRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHY 352 (506)
T ss_pred hhHhhhcc---CCEEecCCchhCC-----------HHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceec
Confidence 11233333 3599999997653 345566666664321 134678899998752
Q ss_pred -----------------CCCHHhhccCCcceEEEcCCCCHH
Q 003503 363 -----------------SIDPALRRFGRFDREIDIGVPDEV 386 (815)
Q Consensus 363 -----------------~ld~al~r~~rf~~~i~i~~p~~~ 386 (815)
.+...+.. ||+..+.++.|+.+
T Consensus 353 ~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 353 QGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred CCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 24445554 89998999888765
No 461
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.10 E-value=0.00015 Score=74.13 Aligned_cols=185 Identities=19% Similarity=0.253 Sum_probs=111.8
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh-CCeE---------
Q 003503 208 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-GAFF--------- 277 (815)
Q Consensus 208 ~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l-~~~~--------- 277 (815)
++.+-+++.+.+.++....+..+..- ..-.++++|||+|+||-|.+.+|-+++ |.-+
T Consensus 6 kyrpksl~~l~~~~e~~~~Lksl~~~-------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t 72 (351)
T KOG2035|consen 6 KYRPKSLDELIYHEELANLLKSLSST-------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRT 72 (351)
T ss_pred hcCcchhhhcccHHHHHHHHHHhccc-------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEE
Confidence 34555666677777666666554431 112479999999999999998888775 2111
Q ss_pred --------EEEec---h---hhhhhhhchhH-HHHHHHHHHHHhc---------CCcEEEecccccccCCCCCchhHHHH
Q 003503 278 --------FLING---P---EIMSKLAGESE-SNLRKAFEEAEKN---------APSIIFIDELDSIAPKREKTHGEVER 333 (815)
Q Consensus 278 --------i~v~~---~---~l~~~~~g~~~-~~l~~vf~~a~~~---------~p~il~iDEid~l~~~~~~~~~~~~~ 333 (815)
+.++- . ++.....|... -.+..++.+..+. ..-+++|-|.|.|. +
T Consensus 73 ~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT-----------~ 141 (351)
T KOG2035|consen 73 FTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT-----------R 141 (351)
T ss_pred EecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhh-----------H
Confidence 11110 0 00001112111 1233333333222 22578899988775 3
Q ss_pred HHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHHHHHHHHHHhcCCccc-cchhhhHHHh
Q 003503 334 RIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAK 412 (815)
Q Consensus 334 ~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~ 412 (815)
.....|..-|+.+....++ |..+|....+-+++++ |. ..+.++.|+.++-..++...+++-.+. +..-+.++++
T Consensus 142 dAQ~aLRRTMEkYs~~~Rl--Il~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~ 216 (351)
T KOG2035|consen 142 DAQHALRRTMEKYSSNCRL--ILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAE 216 (351)
T ss_pred HHHHHHHHHHHHHhcCceE--EEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHH
Confidence 4556677777777665444 4467888888889988 44 457899999999999998776654432 2345677888
Q ss_pred hcCCCcHHH
Q 003503 413 DTHGYVGSD 421 (815)
Q Consensus 413 ~t~g~~~~d 421 (815)
.+.|.....
T Consensus 217 kS~~nLRrA 225 (351)
T KOG2035|consen 217 KSNRNLRRA 225 (351)
T ss_pred HhcccHHHH
Confidence 777654443
No 462
>PRK06921 hypothetical protein; Provisional
Probab=98.10 E-value=5.3e-06 Score=87.72 Aligned_cols=68 Identities=25% Similarity=0.264 Sum_probs=45.0
Q ss_pred CcceEEeCCCCCChhHHHHHHHHHh----CCcEEEEeccchhhhccCccHHHHHHHHHHHhhCCCeEEEEecchh
Q 003503 522 SKGVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDS 592 (815)
Q Consensus 522 ~~gilL~GppGtGKT~lakala~~~----~~~~i~v~~~~l~~~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~ 592 (815)
..+++|+||||+|||+|+.++|+++ +..++.+...+++..... ........++... ...+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~-~~~~~~~~~~~~~--~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKD-DFDLLEAKLNRMK--KVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHH-HHHHHHHHHHHhc--CCCEEEEecccc
Confidence 4679999999999999999999986 445667776666543211 1111222233332 346999999944
No 463
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.10 E-value=4.6e-06 Score=90.53 Aligned_cols=69 Identities=29% Similarity=0.495 Sum_probs=48.4
Q ss_pred cceEEeCCCCCChhHHHHHHHHHh---CCcEEEEeccchhhhccC---ccHHHHHHHHHHHhhCCCeEEEEecchhh
Q 003503 523 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFG---ESEANVREIFDKARQSAPCVLFFDELDSI 593 (815)
Q Consensus 523 ~gilL~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~~~g---~se~~i~~~F~~a~~~~p~ilfiDEid~l 593 (815)
.+++|+||+|+|||+|+.++|.++ +..++.++.++++..... .........++.... ..+|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~--~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLIN--CDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhcc--CCEEEEeccCCC
Confidence 679999999999999999999986 567888888888764321 011111222344333 369999999775
No 464
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.09 E-value=4.8e-06 Score=82.61 Aligned_cols=71 Identities=28% Similarity=0.603 Sum_probs=46.6
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhhhch-hHHHHHHHHHHHHhcCCcEEEeccccc
Q 003503 247 KPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGE-SESNLRKAFEEAEKNAPSIIFIDELDS 319 (815)
Q Consensus 247 ~~~~~VLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~-~~~~l~~vf~~a~~~~p~il~iDEid~ 319 (815)
..+.+++|+||+|+|||+||.+++.++ +..+..++..+++...... ........++... .+.+|+|||+..
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~ 119 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGY 119 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTS
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccce
Confidence 357899999999999999999998765 6778888888876543211 1112223344433 356999999854
No 465
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.08 E-value=2.8e-05 Score=90.46 Aligned_cols=152 Identities=21% Similarity=0.359 Sum_probs=90.2
Q ss_pred CCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhh
Q 003503 210 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIM 286 (815)
Q Consensus 210 ~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~ 286 (815)
...+|+++.|.+..++++.+.+.. + ......|||+|++||||+++|+++.... ..+|+.++|..+.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~----------~-A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARK----------L-AMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHH----------H-hCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 456899999999888877665542 1 1235569999999999999999987654 3578999997653
Q ss_pred hhh-----hchhH-------HHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhccc-------
Q 003503 287 SKL-----AGESE-------SNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK------- 347 (815)
Q Consensus 287 ~~~-----~g~~~-------~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~------- 347 (815)
... .|... ..-...|+.+ ....||||||+.+.+. ....|+..+..-.
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L~~~-----------~Q~~Ll~~l~~~~~~~~g~~ 333 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEMSPR-----------MQAKLLRFLNDGTFRRVGED 333 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhCCHH-----------HHHHHHHHHhcCCcccCCCC
Confidence 211 11000 0001123333 2458999999988532 3345555554311
Q ss_pred --CCCcEEEEEecCCC-C------CCCHHhhccCCcceEEEcCCCCHHHHH
Q 003503 348 --SRAHVIVMGATNRP-N------SIDPALRRFGRFDREIDIGVPDEVGRL 389 (815)
Q Consensus 348 --~~~~vivi~atn~~-~------~ld~al~r~~rf~~~i~i~~p~~~~R~ 389 (815)
....+-+|++|+.. . .+.+.|.. |+.. +.+..|...+|.
T Consensus 334 ~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~-~~i~lPpLreR~ 381 (520)
T PRK10820 334 HEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNV-LTLNLPPLRDRP 381 (520)
T ss_pred cceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCe-eEEeCCCcccCh
Confidence 12345677766543 1 23344433 4432 556666666665
No 466
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.08 E-value=8.4e-06 Score=94.06 Aligned_cols=96 Identities=30% Similarity=0.455 Sum_probs=65.6
Q ss_pred CCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhh
Q 003503 212 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSK 288 (815)
Q Consensus 212 ~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~ 288 (815)
-.|+++.|.+..++.+++.+..- ......|||+|++||||+++|++|.... +.+|+.+||..+...
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~-----------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLY-----------ARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 46788999999998888777531 1235689999999999999999998764 468999999765321
Q ss_pred h-----hchhHH--------HHHHHHHHHHhcCCcEEEeccccccc
Q 003503 289 L-----AGESES--------NLRKAFEEAEKNAPSIIFIDELDSIA 321 (815)
Q Consensus 289 ~-----~g~~~~--------~l~~vf~~a~~~~p~il~iDEid~l~ 321 (815)
. .|.... .-...|+.+. ...||||||+.+.
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp 320 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEMP 320 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhCC
Confidence 1 111000 0112233332 3589999999875
No 467
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.08 E-value=2.2e-05 Score=85.41 Aligned_cols=131 Identities=20% Similarity=0.306 Sum_probs=85.1
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCC-------------------------eEEEEechh---hhhhh-hchhHHHH
Q 003503 247 KPPKGILLYGPPGSGKTLIARAVANETGA-------------------------FFFLINGPE---IMSKL-AGESESNL 297 (815)
Q Consensus 247 ~~~~~VLL~GppGtGKTtLar~la~~l~~-------------------------~~i~v~~~~---l~~~~-~g~~~~~l 297 (815)
.-+..+||+||+|+|||++|+.+|+.+.. .++.+.... -.++. ..-.-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 34567999999999999999999988631 123332210 00000 00123456
Q ss_pred HHHHHHHHh----cCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCC
Q 003503 298 RKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGR 373 (815)
Q Consensus 298 ~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~r 373 (815)
|.+.+.+.. ....|+++|+++.+- ....+.|+..++.... .+.+|.+|+.++.+.+.+++ |
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld-----------~~a~naLLk~LEep~~--~~~~Ilvth~~~~ll~ti~S--R 163 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMN-----------LQAANSLLKVLEEPPP--QVVFLLVSHAADKVLPTIKS--R 163 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCC-----------HHHHHHHHHHHHhCcC--CCEEEEEeCChHhChHHHHH--H
Confidence 666665542 334588888888764 2345667777776542 35566688999999999887 4
Q ss_pred cceEEEcCCCCHHHHHHHHH
Q 003503 374 FDREIDIGVPDEVGRLEILR 393 (815)
Q Consensus 374 f~~~i~i~~p~~~~R~~il~ 393 (815)
+ ..+.++.|+.++-.+.|.
T Consensus 164 c-~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 164 C-RKMVLPAPSHEEALAYLR 182 (325)
T ss_pred h-hhhcCCCCCHHHHHHHHH
Confidence 4 557888898888777664
No 468
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.07 E-value=7.5e-05 Score=85.86 Aligned_cols=65 Identities=28% Similarity=0.431 Sum_probs=52.1
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 003503 207 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFL 279 (815)
Q Consensus 207 ~~~~~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~i~ 279 (815)
+++.+.+.+|+.-..+-+++++.++..-+. +-.+.+-+||+|||||||||+++.||++++..+..
T Consensus 11 ~ky~P~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 11 EKYAPKTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred hhcCCCCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 467788889999999999999998874221 22345578899999999999999999999877654
No 469
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.07 E-value=1e-05 Score=80.42 Aligned_cols=110 Identities=19% Similarity=0.222 Sum_probs=65.9
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEechhhhh------h---h----------------h--chh
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMS------K---L----------------A--GES 293 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~~------~---~----------------~--g~~ 293 (815)
++.+.+++.+.|.||+|+|||||+++|++..... -+.+++.++.. . + . -..
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 22 SLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 4567889999999999999999999999986432 23444432210 0 0 0 001
Q ss_pred HHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCC
Q 003503 294 ESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI 364 (815)
Q Consensus 294 ~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~l 364 (815)
.++.+..+..+....|.++++||-..-+ +......+...+..+.. . ..++.+|+.++.+
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~L----------D~~~~~~l~~~l~~~~~-~-~tii~~sh~~~~~ 160 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGL----------DPITERQLLSLIFEVLK-D-KTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccC----------CHHHHHHHHHHHHHHcC-C-CEEEEEecCHHHH
Confidence 2445566777777899999999955433 12223334444444432 2 3455566766543
No 470
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=0.00013 Score=78.76 Aligned_cols=129 Identities=20% Similarity=0.315 Sum_probs=84.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCe---------------------EEEEe-chhhhhh--hhchhHHHHHHHHHHH
Q 003503 249 PKGILLYGPPGSGKTLIARAVANETGAF---------------------FFLIN-GPEIMSK--LAGESESNLRKAFEEA 304 (815)
Q Consensus 249 ~~~VLL~GppGtGKTtLar~la~~l~~~---------------------~i~v~-~~~l~~~--~~g~~~~~l~~vf~~a 304 (815)
+..+||+||+|+||+++|.++|+.+-.. +..+. .++-.+. ...-.-..+|.+.+..
T Consensus 26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~ 105 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKL 105 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHH
Confidence 4579999999999999999999876321 12221 0000000 0001234456665544
Q ss_pred Hh----cCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEc
Q 003503 305 EK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDI 380 (815)
Q Consensus 305 ~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i 380 (815)
.. +.--|++||++|.+. ....+.|+..+++-. .++++|.+++.++.+.|.+++ |+ ..+.+
T Consensus 106 ~~~p~~g~~kV~iI~~ae~m~-----------~~AaNaLLKtLEEPp--~~~~fiL~~~~~~~lLpTIrS--RC-q~i~~ 169 (319)
T PRK08769 106 ALTPQYGIAQVVIVDPADAIN-----------RAACNALLKTLEEPS--PGRYLWLISAQPARLPATIRS--RC-QRLEF 169 (319)
T ss_pred hhCcccCCcEEEEeccHhhhC-----------HHHHHHHHHHhhCCC--CCCeEEEEECChhhCchHHHh--hh-eEeeC
Confidence 32 233699999999874 234577888887643 356666678889999999998 65 55789
Q ss_pred CCCCHHHHHHHHH
Q 003503 381 GVPDEVGRLEILR 393 (815)
Q Consensus 381 ~~p~~~~R~~il~ 393 (815)
+.|+.++-...|.
T Consensus 170 ~~~~~~~~~~~L~ 182 (319)
T PRK08769 170 KLPPAHEALAWLL 182 (319)
T ss_pred CCcCHHHHHHHHH
Confidence 9999887777765
No 471
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.06 E-value=7.2e-06 Score=97.78 Aligned_cols=132 Identities=20% Similarity=0.171 Sum_probs=75.8
Q ss_pred CCCcceEEeCCCCCChhHHHHHHHHHhCC-------cEEEEeccchhhhccCc-cHH-HH-HHHHHHHhhCCCeEEEEec
Q 003503 520 SPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISVKGPELLTMWFGE-SEA-NV-REIFDKARQSAPCVLFFDE 589 (815)
Q Consensus 520 ~~~~gilL~GppGtGKT~lakala~~~~~-------~~i~v~~~~l~~~~~g~-se~-~i-~~~F~~a~~~~p~ilfiDE 589 (815)
+...+|||+|.||||||.+|++++..... ++..+....... +.+. +.. .+ .-.+..|.. .+++|||
T Consensus 490 RgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~-~~d~~tG~~~le~GaLvlAdg---GtL~IDE 565 (915)
T PTZ00111 490 RGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIK-FNESDNGRAMIQPGAVVLANG---GVCCIDE 565 (915)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhh-hcccccCcccccCCcEEEcCC---CeEEecc
Confidence 33446999999999999999999987542 233322221110 0000 000 00 001112222 4999999
Q ss_pred chhhhhccCCCCCCCCchHHHHHHHHHhccccCC-----------CCCcEEEEEecCCCC-------------CCCcccc
Q 003503 590 LDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN-----------AKKTVFIIGATNRPD-------------IIDPALL 645 (815)
Q Consensus 590 id~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----------~~~~v~vi~aTn~~~-------------~ld~all 645 (815)
++.+.. .....|+..|+.-. -..++-||||+|..+ .|.++++
T Consensus 566 idkms~--------------~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LL 631 (915)
T PTZ00111 566 LDKCHN--------------ESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLF 631 (915)
T ss_pred hhhCCH--------------HHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHh
Confidence 999732 23344455453211 124689999999742 2678999
Q ss_pred CCCCCccee-eccCCCHHHHHHHHHHH
Q 003503 646 RPGRLDQLI-YIPLPDEASRLQIFKAC 671 (815)
Q Consensus 646 r~gRf~~~i-~~~~p~~~~r~~Il~~~ 671 (815)
+ |||.+. .++.|+.+.=..|-++.
T Consensus 632 S--RFDLIf~l~D~~d~~~D~~lA~hI 656 (915)
T PTZ00111 632 T--RFDLIYLVLDHIDQDTDQLISLSI 656 (915)
T ss_pred h--hhcEEEEecCCCChHHHHHHHHHH
Confidence 8 999775 45677766544444433
No 472
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.06 E-value=1.4e-05 Score=79.07 Aligned_cols=108 Identities=21% Similarity=0.314 Sum_probs=65.0
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEechhhhh-------h---hh---------------chhHHH
Q 003503 244 IGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMS-------K---LA---------------GESESN 296 (815)
Q Consensus 244 l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~~-------~---~~---------------g~~~~~ 296 (815)
+.+.+++.+.|.||+|+|||||+++|++..... -+.+++.++.. . +. -...++
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~ 102 (173)
T cd03246 23 FSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQR 102 (173)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHH
Confidence 456788999999999999999999999986432 13344322110 0 00 012334
Q ss_pred HHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCC
Q 003503 297 LRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN 362 (815)
Q Consensus 297 l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~ 362 (815)
.+..+..+....|.++++||--..+ +.....++...+..+... ...+|.+|++.+
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~L----------D~~~~~~l~~~l~~~~~~-~~tii~~sh~~~ 157 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHL----------DVEGERALNQAIAALKAA-GATRIVIAHRPE 157 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCcccc----------CHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH
Confidence 5666777778899999999954332 222334444444444332 334555666654
No 473
>PF05729 NACHT: NACHT domain
Probab=98.06 E-value=3.4e-05 Score=75.19 Aligned_cols=140 Identities=21% Similarity=0.337 Sum_probs=73.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhC---------CeEEEEechhhhhhh------------hchhHHHHHHHHH-HHHhcC
Q 003503 251 GILLYGPPGSGKTLIARAVANETG---------AFFFLINGPEIMSKL------------AGESESNLRKAFE-EAEKNA 308 (815)
Q Consensus 251 ~VLL~GppGtGKTtLar~la~~l~---------~~~i~v~~~~l~~~~------------~g~~~~~l~~vf~-~a~~~~ 308 (815)
-++|+|+||+|||++++.++..+. ...+.+.+.+..... ...........+. ......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 589999999999999999987652 122334433322110 0111111111222 223445
Q ss_pred CcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhc-ccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcCCCCHHH
Q 003503 309 PSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDG-LKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 387 (815)
Q Consensus 309 p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~-~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~ 387 (815)
..+++||-+|.+...... .........+..++.. ...+.++++ ++. +..... +.+...-...+.+...+.++
T Consensus 82 ~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~~~~~~~~lii--t~r-~~~~~~-~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQALPPGVKLII--TSR-PRAFPD-LRRRLKQAQILELEPFSEED 154 (166)
T ss_pred ceEEEEechHhcccchhh---hHHHHHHHHHHHHhhhccCCCCeEEE--EEc-CChHHH-HHHhcCCCcEEEECCCCHHH
Confidence 678899999998764322 1122333444455543 222333333 332 222221 33211122567888888998
Q ss_pred HHHHHHHHhc
Q 003503 388 RLEILRIHTK 397 (815)
Q Consensus 388 R~~il~~~~~ 397 (815)
..++++.+++
T Consensus 155 ~~~~~~~~f~ 164 (166)
T PF05729_consen 155 IKQYLRKYFS 164 (166)
T ss_pred HHHHHHHHhh
Confidence 8888876654
No 474
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.04 E-value=1.1e-05 Score=90.20 Aligned_cols=151 Identities=25% Similarity=0.405 Sum_probs=93.8
Q ss_pred CcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhh-
Q 003503 213 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSK- 288 (815)
Q Consensus 213 ~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~- 288 (815)
.+.++.|....++++++.+..- ....-.|||+|++||||-++||+|.+.. +.+|+.+||..+-..
T Consensus 139 ~~~~liG~S~am~~l~~~i~kv-----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKV-----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 4567899999999998887631 1235679999999999999999998776 458999999655321
Q ss_pred ----hhch----hHH---HHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhc-----cc----C
Q 003503 289 ----LAGE----SES---NLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDG-----LK----S 348 (815)
Q Consensus 289 ----~~g~----~~~---~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~-----~~----~ 348 (815)
..|. ... .-.-.|+.|.. ..||+|||..+.. .+...|+..+.. +. -
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~mpl-----------~~Q~kLLRvLqe~~~~rvG~~~~i 273 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEMPL-----------ELQVKLLRVLQEREFERVGGNKPI 273 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccCCH-----------HHHHHHHHHHHcCeeEecCCCccc
Confidence 1111 000 11123555544 4899999987752 233445554432 11 1
Q ss_pred CCcEEEEEecCCCCCCCHHhhccCCcc-------eEEEcCCCCHHHHHHH
Q 003503 349 RAHVIVMGATNRPNSIDPALRRFGRFD-------REIDIGVPDEVGRLEI 391 (815)
Q Consensus 349 ~~~vivi~atn~~~~ld~al~r~~rf~-------~~i~i~~p~~~~R~~i 391 (815)
+..|-||++||.. +..... .|+|- ..+.+..|...+|.+-
T Consensus 274 ~vdvRiIaaT~~d--L~~~v~-~G~FReDLyyRLnV~~i~iPpLRER~ED 320 (464)
T COG2204 274 KVDVRIIAATNRD--LEEEVA-AGRFREDLYYRLNVVPLRLPPLRERKED 320 (464)
T ss_pred ceeeEEEeecCcC--HHHHHH-cCCcHHHHHhhhccceecCCcccccchh
Confidence 2367789998864 222221 23331 3456777777777643
No 475
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.04 E-value=6.1e-06 Score=80.29 Aligned_cols=79 Identities=29% Similarity=0.360 Sum_probs=52.9
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEechhhhh-------hhh-----chhHHHHHHHHHHHHhcC
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMS-------KLA-----GESESNLRKAFEEAEKNA 308 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~~-------~~~-----g~~~~~l~~vf~~a~~~~ 308 (815)
++.+.++..++|.|++|+|||||+++|++.+... -+.+++..+.. ... -...+..+..+..+....
T Consensus 19 ~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 19 SLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLN 98 (157)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcC
Confidence 3456788999999999999999999999987533 24555432211 000 112334455566677778
Q ss_pred CcEEEeccccccc
Q 003503 309 PSIIFIDELDSIA 321 (815)
Q Consensus 309 p~il~iDEid~l~ 321 (815)
|.++++||...-+
T Consensus 99 ~~i~ilDEp~~~l 111 (157)
T cd00267 99 PDLLLLDEPTSGL 111 (157)
T ss_pred CCEEEEeCCCcCC
Confidence 9999999965443
No 476
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.03 E-value=0.00011 Score=79.28 Aligned_cols=127 Identities=15% Similarity=0.217 Sum_probs=86.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCC-----------------------eEEEEechhhhhhhhchhHHHHHHHHHHHH
Q 003503 249 PKGILLYGPPGSGKTLIARAVANETGA-----------------------FFFLINGPEIMSKLAGESESNLRKAFEEAE 305 (815)
Q Consensus 249 ~~~VLL~GppGtGKTtLar~la~~l~~-----------------------~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~ 305 (815)
+..+||+||.|+||+++|+.+|+.+-. .++.+.... .++. -.-..+|.+.+...
T Consensus 25 ~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~--I~vdqiR~l~~~~~ 101 (319)
T PRK06090 25 PGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKS--ITVEQIRQCNRLAQ 101 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCc--CCHHHHHHHHHHHh
Confidence 557999999999999999999987622 122222100 0000 12334555544432
Q ss_pred ----hcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEcC
Q 003503 306 ----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIG 381 (815)
Q Consensus 306 ----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~al~r~~rf~~~i~i~ 381 (815)
.+...|++||++|.+. ....+.|+..+++- ..++++|..|+.++.+.|.+++ |. ..+.++
T Consensus 102 ~~~~~~~~kV~iI~~ae~m~-----------~~AaNaLLKtLEEP--p~~t~fiL~t~~~~~lLpTI~S--RC-q~~~~~ 165 (319)
T PRK06090 102 ESSQLNGYRLFVIEPADAMN-----------ESASNALLKTLEEP--APNCLFLLVTHNQKRLLPTIVS--RC-QQWVVT 165 (319)
T ss_pred hCcccCCceEEEecchhhhC-----------HHHHHHHHHHhcCC--CCCeEEEEEECChhhChHHHHh--cc-eeEeCC
Confidence 2334699999999874 23457788888763 4467888888999999999998 65 568899
Q ss_pred CCCHHHHHHHHHH
Q 003503 382 VPDEVGRLEILRI 394 (815)
Q Consensus 382 ~p~~~~R~~il~~ 394 (815)
.|+.+...+.|..
T Consensus 166 ~~~~~~~~~~L~~ 178 (319)
T PRK06090 166 PPSTAQAMQWLKG 178 (319)
T ss_pred CCCHHHHHHHHHH
Confidence 9999888777753
No 477
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.03 E-value=9.8e-06 Score=80.22 Aligned_cols=109 Identities=19% Similarity=0.228 Sum_probs=64.6
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEechhhhh-----------------hhhc---------hhH
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMS-----------------KLAG---------ESE 294 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~~-----------------~~~g---------~~~ 294 (815)
++.+.+++.+.|.||+|+|||||++.|++.+... -+.+++..+.. .+.+ ...
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 20 SLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 3456788999999999999999999999976321 12333321100 0001 113
Q ss_pred HHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCC
Q 003503 295 SNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN 362 (815)
Q Consensus 295 ~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~ 362 (815)
++.+..+..+....|.++++||-..-+ +......+..++..+..+. ..+|.+|++++
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~L----------D~~~~~~l~~~l~~~~~~g-~tiii~th~~~ 156 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGL----------DPESRREFWELLRELKKEG-KTILLSSHILE 156 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCC----------CHHHHHHHHHHHHHHHHCC-CEEEEECCCHH
Confidence 344556777778899999999955433 2223334444444443332 34455666654
No 478
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.03 E-value=8.9e-06 Score=83.84 Aligned_cols=109 Identities=21% Similarity=0.284 Sum_probs=75.8
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeE--EEEechhhh-------------------------hhhhch--h
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF--FLINGPEIM-------------------------SKLAGE--S 293 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~~--i~v~~~~l~-------------------------~~~~g~--~ 293 (815)
+|.+..++.+.|+|++||||||++|+|.+...... +..+|.++. .+|+.+ .
T Consensus 33 sf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSG 112 (268)
T COG4608 33 SFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSG 112 (268)
T ss_pred eEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCc
Confidence 44567899999999999999999999999876442 444443321 122222 2
Q ss_pred HHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCC
Q 003503 294 ESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRP 361 (815)
Q Consensus 294 ~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~ 361 (815)
.++-|-.+..|..-.|.+++.||.-+.+ +-.+..|.+++|..++...++..+-.+++.
T Consensus 113 GQrQRi~IARALal~P~liV~DEpvSaL----------DvSiqaqIlnLL~dlq~~~~lt~lFIsHDL 170 (268)
T COG4608 113 GQRQRIGIARALALNPKLIVADEPVSAL----------DVSVQAQILNLLKDLQEELGLTYLFISHDL 170 (268)
T ss_pred hhhhhHHHHHHHhhCCcEEEecCchhhc----------chhHHHHHHHHHHHHHHHhCCeEEEEEEEH
Confidence 3455667778888899999999966544 334567778888777776666666666654
No 479
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.02 E-value=6.5e-06 Score=81.92 Aligned_cols=111 Identities=22% Similarity=0.337 Sum_probs=65.6
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEechhhhh--------------------hhh----------
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMS--------------------KLA---------- 290 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~~--------------------~~~---------- 290 (815)
++.+.++..+.|.||+|+|||||+++|++.+... -+.+++.++.. .+.
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~ 99 (178)
T cd03229 20 SLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIAL 99 (178)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheee
Confidence 3456788999999999999999999999876432 13333321100 000
Q ss_pred -chhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCC
Q 003503 291 -GESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNS 363 (815)
Q Consensus 291 -g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~~ 363 (815)
-...++-+..+..+....|.++++||-..-+ +......+..++..+.......++.++++++.
T Consensus 100 ~lS~G~~qr~~la~al~~~p~llilDEP~~~L----------D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~ 163 (178)
T cd03229 100 GLSGGQQQRVALARALAMDPDVLLLDEPTSAL----------DPITRREVRALLKSLQAQLGITVVLVTHDLDE 163 (178)
T ss_pred cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 0112445566777778899999999954332 22333445555544443322345556666543
No 480
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.02 E-value=2.9e-05 Score=93.02 Aligned_cols=152 Identities=24% Similarity=0.342 Sum_probs=89.6
Q ss_pred CCCcccccChHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC---CeEEEEechhhhh
Q 003503 211 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG---AFFFLINGPEIMS 287 (815)
Q Consensus 211 ~~~~~~i~G~~~~~~~i~~~v~~~l~~~~~~~~l~i~~~~~VLL~GppGtGKTtLar~la~~l~---~~~i~v~~~~l~~ 287 (815)
..+|+++.|.+..++++.+.+..- ......|||+|++||||+++|++|..... .+|+.+||..+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQA-----------AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 346888999998888876665531 12355799999999999999999988753 6899999976532
Q ss_pred -----hhhchh----HHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhccc-----C----C
Q 003503 288 -----KLAGES----ESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----S----R 349 (815)
Q Consensus 288 -----~~~g~~----~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----~----~ 349 (815)
...|.. .......|+. .....||||||+.+... +...|+..++.-. . .
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~---a~~GtL~ldei~~l~~~-----------~Q~~Ll~~l~~~~~~~~~~~~~~~ 455 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFEL---AHGGTLFLEKVEYLSPE-----------LQSALLQVLKTGVITRLDSRRLIP 455 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeE---CCCCEEEEcChhhCCHH-----------HHHHHHHHHhcCcEEeCCCCceEE
Confidence 111110 0000001222 23468999999987532 3345555554211 0 1
Q ss_pred CcEEEEEecCCCCCCCHHhhccCCcc-------eEEEcCCCCHHHHHH
Q 003503 350 AHVIVMGATNRPNSIDPALRRFGRFD-------REIDIGVPDEVGRLE 390 (815)
Q Consensus 350 ~~vivi~atn~~~~ld~al~r~~rf~-------~~i~i~~p~~~~R~~ 390 (815)
..+-+|++|+..- . .+...++|. ..+.+..|...+|.+
T Consensus 456 ~~~riI~~t~~~l--~-~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~ 500 (638)
T PRK11388 456 VDVRVIATTTADL--A-MLVEQNRFSRQLYYALHAFEITIPPLRMRRE 500 (638)
T ss_pred eeEEEEEeccCCH--H-HHHhcCCChHHHhhhhceeEEeCCChhhhhh
Confidence 2466777777531 1 111222331 235566777777753
No 481
>PRK06851 hypothetical protein; Provisional
Probab=98.02 E-value=0.00015 Score=79.33 Aligned_cols=26 Identities=27% Similarity=0.508 Sum_probs=22.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhC
Q 003503 249 PKGILLYGPPGSGKTLIARAVANETG 274 (815)
Q Consensus 249 ~~~VLL~GppGtGKTtLar~la~~l~ 274 (815)
.+.++|.|+|||||||+++.++..+.
T Consensus 30 ~~~~il~G~pGtGKStl~~~i~~~~~ 55 (367)
T PRK06851 30 NRIFILKGGPGTGKSTLMKKIGEEFL 55 (367)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999988763
No 482
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.01 E-value=9.9e-06 Score=92.89 Aligned_cols=169 Identities=23% Similarity=0.273 Sum_probs=93.6
Q ss_pred cceEEeCCCCCChhHHHHHHHHHhC---CcEEEEeccchhhhc-----cCccH-------HHHHHHHHHHhhCCCeEEEE
Q 003503 523 KGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTMW-----FGESE-------ANVREIFDKARQSAPCVLFF 587 (815)
Q Consensus 523 ~gilL~GppGtGKT~lakala~~~~---~~~i~v~~~~l~~~~-----~g~se-------~~i~~~F~~a~~~~p~ilfi 587 (815)
..++++|++||||+++|+++..... .+|+.+++..+...+ .|... ......|..| ....|||
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l 239 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFL 239 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeEC---CCCEEEE
Confidence 4599999999999999999988764 589999987763221 11000 0001112222 2358999
Q ss_pred ecchhhhhccCCCCCCCCchHHHHHHHHHhccccCC-----C----CCcEEEEEecCCC-------CCCCccccCCCCCc
Q 003503 588 DELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN-----A----KKTVFIIGATNRP-------DIIDPALLRPGRLD 651 (815)
Q Consensus 588 DEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----~----~~~v~vi~aTn~~-------~~ld~allr~gRf~ 651 (815)
|||+.+.. .+...|+..++.-. . .-++-||+||+.. ..+.+.|.. |+.
T Consensus 240 ~~i~~l~~--------------~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~ 303 (445)
T TIGR02915 240 DEIGDLPL--------------NLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA 303 (445)
T ss_pred echhhCCH--------------HHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc
Confidence 99999843 23445555444211 1 1257788888764 223344433 443
Q ss_pred ceeeccCCCHHHHH----HHHHHHhccC----CCC-Cccc---HHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 003503 652 QLIYIPLPDEASRL----QIFKACLRKS----PIS-PDVD---LSALARYTHGFSGADITEVCQRACKYAIR 711 (815)
Q Consensus 652 ~~i~~~~p~~~~r~----~Il~~~l~~~----~~~-~~~~---~~~la~~t~g~sg~di~~l~~~a~~~a~~ 711 (815)
.+.+..|...+|. .+++.++++. +.. ..++ +..|..+.--.+-++|++++++|+..+-.
T Consensus 304 -~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~~~ 374 (445)
T TIGR02915 304 -EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMAEG 374 (445)
T ss_pred -cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCC
Confidence 2333444444443 3444444322 111 1122 34444433223458999999999876543
No 483
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.01 E-value=5e-06 Score=79.00 Aligned_cols=59 Identities=32% Similarity=0.559 Sum_probs=42.9
Q ss_pred CcceEEeCCCCCChhHHHHHHHHHhCC---cEEEEeccchhhhccCccHHHHHHHHHHHhhCCCeEEEEecchhhh
Q 003503 522 SKGVLFYGPPGCGKTLLAKAIANECQA---NFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIA 594 (815)
Q Consensus 522 ~~gilL~GppGtGKT~lakala~~~~~---~~i~v~~~~l~~~~~g~se~~i~~~F~~a~~~~p~ilfiDEid~l~ 594 (815)
...++|+|++||||+++|+++....+. +|+.+++.++. .++++.+ ....+||+|+|.+.
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLS 82 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS-
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCC
Confidence 345999999999999999999988764 55555554422 4466665 34599999999984
No 484
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.01 E-value=2.9e-05 Score=79.35 Aligned_cols=78 Identities=24% Similarity=0.419 Sum_probs=52.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhh--------hh---------------chhHHHHH
Q 003503 245 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSK--------LA---------------GESESNLR 298 (815)
Q Consensus 245 ~i~~~~~VLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~--------~~---------------g~~~~~l~ 298 (815)
|+.++.-++|+||||||||+++..++... +...++++...+... .. .+....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 77888999999999999999999887543 556777776431100 00 01111233
Q ss_pred HHHHHHHhcCCcEEEecccccccC
Q 003503 299 KAFEEAEKNAPSIIFIDELDSIAP 322 (815)
Q Consensus 299 ~vf~~a~~~~p~il~iDEid~l~~ 322 (815)
.+........+.+++||-+..+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhH
Confidence 444445555789999999998764
No 485
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.01 E-value=2.3e-05 Score=84.49 Aligned_cols=71 Identities=25% Similarity=0.514 Sum_probs=48.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhhhchh-HHHHHHHHHHHHhcCCcEEEecccccc
Q 003503 248 PPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGES-ESNLRKAFEEAEKNAPSIIFIDELDSI 320 (815)
Q Consensus 248 ~~~~VLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~-~~~l~~vf~~a~~~~p~il~iDEid~l 320 (815)
.+.+++|+||+|||||+|+.++|+++ +..+..+..++++....... ...+...++.. ....+|+|||+..-
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e 229 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAE 229 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCc
Confidence 46799999999999999999999987 56677777777654332111 01122333332 34579999998653
No 486
>PRK15115 response regulator GlrR; Provisional
Probab=98.00 E-value=2.1e-05 Score=90.25 Aligned_cols=166 Identities=25% Similarity=0.376 Sum_probs=94.3
Q ss_pred cceEEeCCCCCChhHHHHHHHHHhC---CcEEEEeccchhhhcc-----CccHH-------HHHHHHHHHhhCCCeEEEE
Q 003503 523 KGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTMWF-----GESEA-------NVREIFDKARQSAPCVLFF 587 (815)
Q Consensus 523 ~gilL~GppGtGKT~lakala~~~~---~~~i~v~~~~l~~~~~-----g~se~-------~i~~~F~~a~~~~p~ilfi 587 (815)
..++++|++|||||++|+++..... .+|+.+++..+..... |.... ....+|..+ ....|||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l 234 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAA---EGGTLFL 234 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEEC---CCCEEEE
Confidence 3599999999999999999988864 6899999876532111 11000 000122222 2358999
Q ss_pred ecchhhhhccCCCCCCCCchHHHHHHHHHhccccCC-----C----CCcEEEEEecCCCCCCCccccCCCCCcc------
Q 003503 588 DELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN-----A----KKTVFIIGATNRPDIIDPALLRPGRLDQ------ 652 (815)
Q Consensus 588 DEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----~----~~~v~vi~aTn~~~~ld~allr~gRf~~------ 652 (815)
|||+.|... ....|+..++... . .-++.+|+||+.. ++..+.+ |+|..
T Consensus 235 ~~i~~l~~~--------------~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~~~-~~f~~~l~~~l 297 (444)
T PRK15115 235 DEIGDMPAP--------------LQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAMAR-GEFREDLYYRL 297 (444)
T ss_pred EccccCCHH--------------HHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHHHc-CCccHHHHHhh
Confidence 999998432 3344555444211 1 1257888998863 4444433 56632
Q ss_pred -eeeccCCCHHHHH----HHHHHHhccC----C-----CCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 003503 653 -LIYIPLPDEASRL----QIFKACLRKS----P-----ISPDVDLSALARYTHGFSGADITEVCQRACKYA 709 (815)
Q Consensus 653 -~i~~~~p~~~~r~----~Il~~~l~~~----~-----~~~~~~~~~la~~t~g~sg~di~~l~~~a~~~a 709 (815)
.+.+..|...+|. .+++.++++. . ++ +.-+..|..+.=--+.+++++++++|+..+
T Consensus 298 ~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~-~~a~~~L~~~~WpgNvreL~~~i~~~~~~~ 367 (444)
T PRK15115 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFS-TDAMKRLMTASWPGNVRQLVNVIEQCVALT 367 (444)
T ss_pred ceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcC-HHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 2233445455553 2444444321 1 22 222445555443345689999999988754
No 487
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.99 E-value=1.5e-05 Score=86.40 Aligned_cols=75 Identities=27% Similarity=0.313 Sum_probs=54.7
Q ss_pred eEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCC----C-----CCcEEEEEecCCCC-------CCCccccC
Q 003503 583 CVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN----A-----KKTVFIIGATNRPD-------IIDPALLR 646 (815)
Q Consensus 583 ~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~----~-----~~~v~vi~aTn~~~-------~ld~allr 646 (815)
.|+-|+|+.+.- ..+++.||+.++... + .-..+||++||..+ ...+||++
T Consensus 238 Gi~~f~Ei~K~~--------------~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~d 303 (361)
T smart00763 238 GILEFVEMFKAD--------------IKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLD 303 (361)
T ss_pred ceEEEeehhcCC--------------HHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhh
Confidence 489999988752 457888888777421 1 12358899999873 45789998
Q ss_pred CCCCcceeeccCC-CHHHHHHHHHHHhcc
Q 003503 647 PGRLDQLIYIPLP-DEASRLQIFKACLRK 674 (815)
Q Consensus 647 ~gRf~~~i~~~~p-~~~~r~~Il~~~l~~ 674 (815)
|+. .+++|+| +..+-.+|.+..+..
T Consensus 304 --R~~-~i~vpY~l~~~~E~~Iy~k~~~~ 329 (361)
T smart00763 304 --RII-KVKVPYCLRVSEEAQIYEKLLRN 329 (361)
T ss_pred --ceE-EEeCCCcCCHHHHHHHHHHHhcc
Confidence 998 8899976 556678888887765
No 488
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.99 E-value=2.8e-05 Score=75.43 Aligned_cols=72 Identities=31% Similarity=0.434 Sum_probs=46.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhh----------------------hh--chhHHHHHHHHHHH
Q 003503 252 ILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSK----------------------LA--GESESNLRKAFEEA 304 (815)
Q Consensus 252 VLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~----------------------~~--g~~~~~l~~vf~~a 304 (815)
++|+||||+|||++++.++... +..++.++....... .. .............+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 7899999999999999998876 455555554322110 00 00111122334555
Q ss_pred HhcCCcEEEecccccccCC
Q 003503 305 EKNAPSIIFIDELDSIAPK 323 (815)
Q Consensus 305 ~~~~p~il~iDEid~l~~~ 323 (815)
....+.++++||+..+.+.
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 6678899999999988654
No 489
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=97.98 E-value=0.00021 Score=73.45 Aligned_cols=29 Identities=45% Similarity=0.803 Sum_probs=26.4
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCC
Q 003503 247 KPPKGILLYGPPGSGKTLIARAVANETGA 275 (815)
Q Consensus 247 ~~~~~VLL~GppGtGKTtLar~la~~l~~ 275 (815)
..++.+||.||||||||.||-++++++|.
T Consensus 62 maGravLlaGppgtGKTAlAlaisqELG~ 90 (456)
T KOG1942|consen 62 MAGRAVLLAGPPGTGKTALALAISQELGP 90 (456)
T ss_pred ccCcEEEEecCCCCchhHHHHHHHHHhCC
Confidence 46889999999999999999999999863
No 490
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.97 E-value=1.5e-05 Score=87.72 Aligned_cols=43 Identities=23% Similarity=0.428 Sum_probs=32.4
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEechhh
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEI 285 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l 285 (815)
+|.+.++..+.|+||+|||||||+|.|.+..... .+.+++.++
T Consensus 356 sF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l 400 (580)
T COG4618 356 SFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADL 400 (580)
T ss_pred eeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhh
Confidence 4567889999999999999999999998865322 244554443
No 491
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.95 E-value=4.6e-05 Score=87.99 Aligned_cols=170 Identities=24% Similarity=0.310 Sum_probs=97.6
Q ss_pred CcceEEeCCCCCChhHHHHHHHHHhC---CcEEEEeccchhhhc-----cCccHH-------HHHHHHHHHhhCCCeEEE
Q 003503 522 SKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTMW-----FGESEA-------NVREIFDKARQSAPCVLF 586 (815)
Q Consensus 522 ~~gilL~GppGtGKT~lakala~~~~---~~~i~v~~~~l~~~~-----~g~se~-------~i~~~F~~a~~~~p~ilf 586 (815)
...+++.|++|||||++|+++...+. .+|+.+++..+.... .|.... .....|..+ ....+|
T Consensus 161 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~ 237 (469)
T PRK10923 161 SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQA---DGGTLF 237 (469)
T ss_pred CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEE
Confidence 34599999999999999999998864 689999998763211 111100 000112222 234899
Q ss_pred EecchhhhhccCCCCCCCCchHHHHHHHHHhccccCC-----C----CCcEEEEEecCCC-------CCCCccccCCCCC
Q 003503 587 FDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN-----A----KKTVFIIGATNRP-------DIIDPALLRPGRL 650 (815)
Q Consensus 587 iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----~----~~~v~vi~aTn~~-------~~ld~allr~gRf 650 (815)
||||+.+.. .+...|+..++... + .-++-||+||+.. ..+.+.|.. ||
T Consensus 238 l~~i~~l~~--------------~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l 301 (469)
T PRK10923 238 LDEIGDMPL--------------DVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RL 301 (469)
T ss_pred EeccccCCH--------------HHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hh
Confidence 999999843 23445555544321 1 1246788888763 134455555 66
Q ss_pred -cceeeccCCCH--HHHHHHHHHHhccC----CCC----CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 003503 651 -DQLIYIPLPDE--ASRLQIFKACLRKS----PIS----PDVDLSALARYTHGFSGADITEVCQRACKYAI 710 (815)
Q Consensus 651 -~~~i~~~~p~~--~~r~~Il~~~l~~~----~~~----~~~~~~~la~~t~g~sg~di~~l~~~a~~~a~ 710 (815)
...|.+|+... ++...+++.++++. +.. .+.-+..|..+.--.+-++|++++++++..+-
T Consensus 302 ~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~~ 372 (469)
T PRK10923 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAA 372 (469)
T ss_pred cceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 35566665433 33444555555322 111 11223444443333345899999999987653
No 492
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.94 E-value=0.00011 Score=69.36 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=23.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC
Q 003503 248 PPKGILLYGPPGSGKTLIARAVANETG 274 (815)
Q Consensus 248 ~~~~VLL~GppGtGKTtLar~la~~l~ 274 (815)
....|+++|+||+||||++.-++..+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 456799999999999999999998774
No 493
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.93 E-value=2.4e-05 Score=78.96 Aligned_cols=108 Identities=23% Similarity=0.308 Sum_probs=63.1
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHh--CCe--EEEEechhhhh---------------hhh-------------
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANET--GAF--FFLINGPEIMS---------------KLA------------- 290 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l--~~~--~i~v~~~~l~~---------------~~~------------- 290 (815)
++.+.+++.+.|.||+|+|||||+++|++.+ ... -+.+++.++.. .+.
T Consensus 29 ~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~ 108 (194)
T cd03213 29 SGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAK 108 (194)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHH
Confidence 3456789999999999999999999999987 422 12232211100 000
Q ss_pred ---chhHHHHHHHHHHHHhcCCcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCC
Q 003503 291 ---GESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRP 361 (815)
Q Consensus 291 ---g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~ 361 (815)
-...++.+..+..+....|.++++||-..-+ +......+..++..+.... ..+|.+++++
T Consensus 109 ~~~LS~G~~qrv~laral~~~p~illlDEP~~~L----------D~~~~~~l~~~l~~~~~~~-~tiii~sh~~ 171 (194)
T cd03213 109 LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGL----------DSSSALQVMSLLRRLADTG-RTIICSIHQP 171 (194)
T ss_pred hccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCC----------CHHHHHHHHHHHHHHHhCC-CEEEEEecCc
Confidence 0112334455666667789999999954433 2223344455555443333 3445566655
No 494
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.93 E-value=4.8e-05 Score=75.26 Aligned_cols=109 Identities=15% Similarity=0.205 Sum_probs=61.6
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-------------EEEEechhhhhh----------hhc--hhHHHH
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-------------FFLINGPEIMSK----------LAG--ESESNL 297 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~~-------------~i~v~~~~l~~~----------~~g--~~~~~l 297 (815)
++.+.++..+.|.||+|||||||++++....+.. +..+...+.+.. ... ...++.
T Consensus 15 sl~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~q 94 (176)
T cd03238 15 DVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQ 94 (176)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHH
Confidence 4567889999999999999999999996432221 111110011110 001 112345
Q ss_pred HHHHHHHHhcC--CcEEEecccccccCCCCCchhHHHHHHHHHHHHhhhcccCCCcEEEEEecCCCC
Q 003503 298 RKAFEEAEKNA--PSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN 362 (815)
Q Consensus 298 ~~vf~~a~~~~--p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivi~atn~~~ 362 (815)
+..+..+.... |.++++||-..-+ +......+...+..+... ...||.+|+.++
T Consensus 95 rl~laral~~~~~p~llLlDEPt~~L----------D~~~~~~l~~~l~~~~~~-g~tvIivSH~~~ 150 (176)
T cd03238 95 RVKLASELFSEPPGTLFILDEPSTGL----------HQQDINQLLEVIKGLIDL-GNTVILIEHNLD 150 (176)
T ss_pred HHHHHHHHhhCCCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH
Confidence 55666777778 9999999954332 223334444444444333 334555677654
No 495
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.93 E-value=2e-05 Score=86.63 Aligned_cols=141 Identities=23% Similarity=0.387 Sum_probs=80.2
Q ss_pred CCCCcceEEeCCCCCChhHHHHHHHHHhCC-cEEEEeccchh-------hhccCccHHHHHHHHHHHhhCCCeEEEEecc
Q 003503 519 MSPSKGVLFYGPPGCGKTLLAKAIANECQA-NFISVKGPELL-------TMWFGESEANVREIFDKARQSAPCVLFFDEL 590 (815)
Q Consensus 519 ~~~~~gilL~GppGtGKT~lakala~~~~~-~~i~v~~~~l~-------~~~~g~se~~i~~~F~~a~~~~p~ilfiDEi 590 (815)
..+++|+.|+|++|+|||+|+-++...+.. ....+.--+++ ..+.|.. ..+..+-+...+ ...+|+|||+
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~-~~l~~va~~l~~-~~~lLcfDEF 136 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQD-DPLPQVADELAK-ESRLLCFDEF 136 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCC-ccHHHHHHHHHh-cCCEEEEeee
Confidence 456899999999999999999999887753 11111111111 1111111 112222222222 2249999998
Q ss_pred hhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCC-CCCCccccCCCCCcceeeccCCCHHHHHHHHH
Q 003503 591 DSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP-DIIDPALLRPGRLDQLIYIPLPDEASRLQIFK 669 (815)
Q Consensus 591 d~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~-~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~ 669 (815)
.-- + -....++..|+..+= ..++++|+|+|++ +.|=+ +.+.+..+.|- ..+++
T Consensus 137 ~V~---------D--iaDAmil~rLf~~l~----~~gvvlVaTSN~~P~~Ly~-----~gl~r~~Flp~------I~~l~ 190 (362)
T PF03969_consen 137 QVT---------D--IADAMILKRLFEALF----KRGVVLVATSNRPPEDLYK-----NGLQRERFLPF------IDLLK 190 (362)
T ss_pred ecc---------c--hhHHHHHHHHHHHHH----HCCCEEEecCCCChHHHcC-----CcccHHHHHHH------HHHHH
Confidence 662 1 112335556665543 4578999999974 33322 33333333332 67788
Q ss_pred HHhccCCCCCcccHHHHH
Q 003503 670 ACLRKSPISPDVDLSALA 687 (815)
Q Consensus 670 ~~l~~~~~~~~~~~~~la 687 (815)
.++.-..++...|+....
T Consensus 191 ~~~~vv~ld~~~DyR~~~ 208 (362)
T PF03969_consen 191 RRCDVVELDGGVDYRRRG 208 (362)
T ss_pred hceEEEEecCCCchhhhc
Confidence 888877888777776543
No 496
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.92 E-value=5.9e-05 Score=79.87 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=79.0
Q ss_pred CCCcceEEeCCCCCChhHHHHHHHHHhCCc--------EEEEeccchhhhc-cCc----cHHHHHHHHHHH----hhCCC
Q 003503 520 SPSKGVLFYGPPGCGKTLLAKAIANECQAN--------FISVKGPELLTMW-FGE----SEANVREIFDKA----RQSAP 582 (815)
Q Consensus 520 ~~~~gilL~GppGtGKT~lakala~~~~~~--------~i~v~~~~l~~~~-~g~----se~~i~~~F~~a----~~~~p 582 (815)
+.+..+||+||.|+||+++|.++|..+-.. +-.-.-||+.--. .|. +-..+|.+-+.+ .....
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 345579999999999999999999876321 0000112221000 011 233455554443 33445
Q ss_pred eEEEEecchhhhhccCCCCCCCCchHHHHHHHHHhccccCCCCCcEEEEEecCCCCCCCccccCCCCCcceeeccCC
Q 003503 583 CVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 659 (815)
Q Consensus 583 ~ilfiDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p 659 (815)
.|++||++|.+- ....|.||+.|+. +..++++|..|+.++.|-|.+++ |+. .+.|+++
T Consensus 97 kv~ii~~ad~mt--------------~~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 97 KIYIIHEADRMT--------------LDAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPME 154 (290)
T ss_pred eEEEEechhhcC--------------HHHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cce-EEEccch
Confidence 799999999983 3356888998885 45577777888888999998887 874 6677664
No 497
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.91 E-value=1.5e-05 Score=88.13 Aligned_cols=32 Identities=34% Similarity=0.501 Sum_probs=27.9
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l~ 274 (815)
++.+.+++.+.|.||+|||||||+++||+...
T Consensus 24 sl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~ 55 (356)
T PRK11650 24 DLDVADGEFIVLVGPSGCGKSTLLRMVAGLER 55 (356)
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC
Confidence 34567888999999999999999999999753
No 498
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.91 E-value=6.2e-06 Score=78.91 Aligned_cols=33 Identities=24% Similarity=0.418 Sum_probs=28.3
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Q 003503 243 SIGVKPPKGILLYGPPGSGKTLIARAVANETGA 275 (815)
Q Consensus 243 ~l~i~~~~~VLL~GppGtGKTtLar~la~~l~~ 275 (815)
++.+..+..+.+.|.+||||||||++|++.+..
T Consensus 33 SFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~P 65 (267)
T COG4167 33 SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP 65 (267)
T ss_pred EEEecCCcEEEEEccCCCcHhHHHHHHhcccCC
Confidence 345677888999999999999999999998754
No 499
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.90 E-value=1.8e-05 Score=79.66 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=27.1
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 003503 244 IGVKPPKGILLYGPPGSGKTLIARAVANETG 274 (815)
Q Consensus 244 l~i~~~~~VLL~GppGtGKTtLar~la~~l~ 274 (815)
+.+.+++.+.|.||+|||||||+|.+.+.+.
T Consensus 29 l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~ 59 (263)
T COG1127 29 LDVPRGEILAILGGSGSGKSTLLRLILGLLR 59 (263)
T ss_pred eeecCCcEEEEECCCCcCHHHHHHHHhccCC
Confidence 3567788899999999999999999998764
No 500
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.90 E-value=8e-06 Score=80.85 Aligned_cols=45 Identities=31% Similarity=0.546 Sum_probs=34.0
Q ss_pred hhhhhhcCCCCcc--eEEeCCCCCChhHHHHHHHHHh--CCcEEEEecc
Q 003503 512 EKFEKFGMSPSKG--VLFYGPPGCGKTLLAKAIANEC--QANFISVKGP 556 (815)
Q Consensus 512 ~~~~~~~~~~~~g--ilL~GppGtGKT~lakala~~~--~~~~i~v~~~ 556 (815)
+.++.+++...+| +.++||+|||||||.+++...- ....|.+++.
T Consensus 16 ~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~ 64 (240)
T COG1126 16 EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGE 64 (240)
T ss_pred EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCE
Confidence 4555666666666 8999999999999999998764 3446666664
Done!