Query 003504
Match_columns 815
No_of_seqs 428 out of 5067
Neff 9.5
Searched_HMMs 29240
Date Tue Mar 26 18:07:04 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003504.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1553-1557//hhsearch_pdb/003504hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 1.0 1 1 411.6 17.1 270 508-814 41-320 (329)
2 4asz_A BDNF/NT-3 growth factor 1.0 1 1 410.9 11.3 268 508-814 13-290 (299)
3 4gt4_A Tyrosine-protein kinase 1.0 1 1 405.4 13.0 268 509-812 27-305 (308)
4 4ase_A Vascular endothelial gr 1.0 1 1 395.3 11.5 282 498-814 54-348 (353)
5 3omv_A RAF proto-oncogene seri 1.0 1 1 394.4 16.8 260 507-813 35-300 (307)
6 4b9d_A Serine/threonine-protei 1.0 1 1 392.3 13.1 250 507-806 23-276 (350)
7 4fie_A Serine/threonine-protei 1.0 1 1 391.0 16.8 248 508-806 151-400 (423)
8 4fih_A Serine/threonine-protei 1.0 1 1 390.7 15.4 248 508-806 74-323 (346)
9 4g3f_A NF-kappa-beta-inducing 1.0 1 1 387.4 18.2 251 508-813 58-316 (336)
10 3hmm_A TGF-beta receptor type- 1.0 1 1 384.7 19.5 269 508-814 3-298 (303)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=411.58 Aligned_cols=270 Identities=23% Similarity=0.307 Sum_probs=218.4
Q ss_pred CCCCCCCEECCCCCEEEEEEECC------CCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCEEEE
Q ss_conf 29999980102498003999919------994999999614895129999999999628999992134228882994699
Q 003504 508 SNFDRGTLLAEGKFGPVYRGFLP------GGIHVAVKVLVHGSTLTDQEAARELEYLGRIKHPNLVPLTGYCIAGDQRIA 581 (815)
Q Consensus 508 ~~~~~~~~ig~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 581 (815)
++|.+.++||+|+||.||+|.+. ++..||||+++.......+.|.+|++++++++|||||+++|+|.+....++
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 99288779714778489989987866577896999999775797999999999999985899899969899998998999
Q ss_pred EEEECCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEC
Q ss_conf 99807899944330039888755567877764557876533468878655899999999999999988840899991533
Q 003504 582 IYDYMENGNLQNLLHDLPLGVQTTEDWSTDTWEEDGTNSIQNVGSEGLLTTWRFRHKIALGTARALAFLHHGCSPPIIHR 661 (815)
Q Consensus 582 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~~L~~LH~~~~~~ivH~ 661 (815)
|||||++|+|.++++......... ..........++|..+++|+.|+|.||+||| +++|+||
T Consensus 121 V~Ey~~~G~L~~~l~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHR 182 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSHGPDAKLL---------------AGGEDVAPGPLGLGQLLAVASQVAAGMVYLA---GLHFVHR 182 (329)
T ss_dssp EEECCTTCBHHHHHHTSSCC--------------------------CCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCS
T ss_pred EEECCCCCCHHHHHHHCCCCCCCC---------------CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---CCCEECC
T ss_conf 998279993999998607541001---------------2211245788999999999999999999984---0884226
Q ss_pred CCCCCCEEECCCCCEEECCCCCCEECCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-CCCC
Q ss_conf 688996477699981451444540028997---543234665424884348999999976852228899999883-9988
Q 003504 662 DIKASSVYLDMNLEPRLSDFGLAKIFGNGL---DEEIARGSPGYIPPEFAQPDSDFPTPKSDVYCYGVVLLELIT-GKKP 737 (815)
Q Consensus 662 Dlk~~Nili~~~~~~ki~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~sDvwSlGvil~ellt-g~~p 737 (815)
||||+|||++.++.+||+|||+|+...... ......||+.|||||++.+.. ++.++|||||||++|||+| |+.|
T Consensus 183 DLKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~--~~~~sDvwS~Gvvl~Ellt~G~~P 260 (329)
T 4aoj_A 183 DLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRK--FTTESDVWSFGVVLWEIFTYGKQP 260 (329)
T ss_dssp CCCGGGEEEETTTEEEECCCC----------------CCCCGGGCCHHHHTTCC--CCHHHHHHHHHHHHHHHHTTSCCT
T ss_pred CCCHHHEEECCCCCEEECCCCCCEECCCCCCCEECCCCCCCCCCCCHHHHCCCC--CCCCCCCCCHHHHHHHHHCCCCCC
T ss_conf 666764898899968976660333656787530047645565665826544799--996630010578999998289999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99999843233389999998852878754466445889989999999999540255999999999999999864520
Q 003504 738 LGDDYPEEKEGNLVSWVRGLVRNNKGSRAIDPKIRDTGPEKQMEEALKIGYLCTADLPLKRPSMQQIVGLLKDIEST 814 (815)
Q Consensus 738 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~~il~~L~~~~~~ 814 (815)
|.+....+ + +..+... .+...|..+++++.+++.+||+.||++||+|++|++.|+.+.+.
T Consensus 261 f~~~~~~~----~---~~~i~~g----------~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~ 320 (329)
T 4aoj_A 261 WYQLSNTE----A---IDCITQG----------RELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQA 320 (329)
T ss_dssp TCSSCHHH----H---HHHHHHT----------CCCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred CCCCCHHH----H---HHHHHCC----------CCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHC
T ss_conf 99989999----9---9999808----------98998644639999999997475965792999999999987458
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=410.85 Aligned_cols=268 Identities=26% Similarity=0.365 Sum_probs=217.6
Q ss_pred CCCCCCCEECCCCCEEEEEEECC------CCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCEEEE
Q ss_conf 29999980102498003999919------994999999614895129999999999628999992134228882994699
Q 003504 508 SNFDRGTLLAEGKFGPVYRGFLP------GGIHVAVKVLVHGSTLTDQEAARELEYLGRIKHPNLVPLTGYCIAGDQRIA 581 (815)
Q Consensus 508 ~~~~~~~~ig~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 581 (815)
++|.+.+.||+|+||+||+|.+. ++..||||+++.......++|.+|++++++++|||||+++|+|.+.+..++
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 89298249820788299999987766677887999999677785899999999999985899888628799956998999
Q ss_pred EEEECCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEC
Q ss_conf 99807899944330039888755567877764557876533468878655899999999999999988840899991533
Q 003504 582 IYDYMENGNLQNLLHDLPLGVQTTEDWSTDTWEEDGTNSIQNVGSEGLLTTWRFRHKIALGTARALAFLHHGCSPPIIHR 661 (815)
Q Consensus 582 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~~L~~LH~~~~~~ivH~ 661 (815)
|||||++|+|.++++...... .....+.....++|..+.+++.|+|.||+||| +++|+||
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~-----------------~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHR 152 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDA-----------------VLMAEGNPPTELTQSQMLHIAQQIAAGMVYLA---SQHFVHR 152 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHH-----------------HHC----CCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCS
T ss_pred EEECCCCCCHHHHHHHCCCCC-----------------CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCCCCC
T ss_conf 998589996899998608642-----------------11123577788999999999999999999997---5990467
Q ss_pred CCCCCCEEECCCCCEEECCCCCCEECCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-CCCC
Q ss_conf 6889964776999814514445400289975---43234665424884348999999976852228899999883-9988
Q 003504 662 DIKASSVYLDMNLEPRLSDFGLAKIFGNGLD---EEIARGSPGYIPPEFAQPDSDFPTPKSDVYCYGVVLLELIT-GKKP 737 (815)
Q Consensus 662 Dlk~~Nili~~~~~~ki~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~sDvwSlGvil~ellt-g~~p 737 (815)
||||+|||++.++.+||+|||+|+....... .....||+.|||||++.+.. ++.++|||||||++|||+| |+.|
T Consensus 153 DlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~--~~~k~DVwS~Gvvl~Ellt~G~~P 230 (299)
T 4asz_A 153 DLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRK--FTTESDVWSLGVVLWEIFTYGKQP 230 (299)
T ss_dssp CCSGGGEEECGGGCEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCC--CCHHHHHHHHHHHHHHHHTTTCCT
T ss_pred CCCHHHEEECCCCCEEECCCCCCEECCCCCCEEECCCEECCHHHCCHHHHCCCC--CCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 657763898799868988730010067887416647513470103889870799--970366778899999998089999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99999843233389999998852878754466445889989999999999540255999999999999999864520
Q 003504 738 LGDDYPEEKEGNLVSWVRGLVRNNKGSRAIDPKIRDTGPEKQMEEALKIGYLCTADLPLKRPSMQQIVGLLKDIEST 814 (815)
Q Consensus 738 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~~il~~L~~~~~~ 814 (815)
|.+....+ + +....... +...|..++.++.+++.+||+.||++||+|++|.+.|+++.+.
T Consensus 231 f~~~~~~~----~---~~~i~~~~----------~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~ 290 (299)
T 4asz_A 231 WYQLSNNE----V---IECITQGR----------VLQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKA 290 (299)
T ss_dssp TTTSCHHH----H---HHHHHHTC----------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHH----H---HHHHHCCC----------CCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHC
T ss_conf 99989999----9---99998089----------8899741439999999997687966892999999999877763
No 3
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=405.37 Aligned_cols=268 Identities=22% Similarity=0.277 Sum_probs=213.0
Q ss_pred CCCCCCEECCCCCEEEEEEECC------CCCEEEEEEEECCC-CCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCEEEE
Q ss_conf 9999980102498003999919------99499999961489-5129999999999628999992134228882994699
Q 003504 509 NFDRGTLLAEGKFGPVYRGFLP------GGIHVAVKVLVHGS-TLTDQEAARELEYLGRIKHPNLVPLTGYCIAGDQRIA 581 (815)
Q Consensus 509 ~~~~~~~ig~G~~g~Vy~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 581 (815)
++.+.++||+|+||+||+|.+. +++.||||+++... ....++|.+|+.++++++|||||+++|+|.+.+..++
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~l 106 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSM 106 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred HCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEE
T ss_conf 88586691358884899999857765888869999998801496899999999999985899898773649988998899
Q ss_pred EEEECCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEC
Q ss_conf 99807899944330039888755567877764557876533468878655899999999999999988840899991533
Q 003504 582 IYDYMENGNLQNLLHDLPLGVQTTEDWSTDTWEEDGTNSIQNVGSEGLLTTWRFRHKIALGTARALAFLHHGCSPPIIHR 661 (815)
Q Consensus 582 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~~L~~LH~~~~~~ivH~ 661 (815)
|||||++|+|.++|+......... ...........++|..+.+|+.|+|.||+||| +++||||
T Consensus 107 V~Ey~~~G~L~~~L~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHR 169 (308)
T 4gt4_A 107 IFSYCSHGDLHEFLVMRSPHSDVG--------------STDDDRTVKSALEPPDFVHLVAQIAAGMEYLS---SHHVVHK 169 (308)
T ss_dssp EEECCSSCBHHHHHHTTCSSCCCC-------------------CCEECCCCHHHHHHHHHHHHHHHHHHH---HTTCCCS
T ss_pred EEECCCCCCHHHHHHHHCCCCCCC--------------CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCCCCC
T ss_conf 998189994999998627654333--------------32211112468999999999999999999998---6899778
Q ss_pred CCCCCCEEECCCCCEEECCCCCCEECCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-CCCC
Q ss_conf 688996477699981451444540028997---543234665424884348999999976852228899999883-9988
Q 003504 662 DIKASSVYLDMNLEPRLSDFGLAKIFGNGL---DEEIARGSPGYIPPEFAQPDSDFPTPKSDVYCYGVVLLELIT-GKKP 737 (815)
Q Consensus 662 Dlk~~Nili~~~~~~ki~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~sDvwSlGvil~ellt-g~~p 737 (815)
||||+|||++.++.+||+|||+|+...... ......||..|||||++.+.. ++.++|||||||++|||+| |+.|
T Consensus 170 DLK~~NILl~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~--~s~ksDVwSfGvvl~El~t~g~~P 247 (308)
T 4gt4_A 170 DLATRNVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGK--FSIDSDIWSYGVVLWEVFSYGLQP 247 (308)
T ss_dssp CCSGGGEEECGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCC--CCHHHHHHHHHHHHHHHHTTTCCT
T ss_pred CCCCCCEEECCCCCEEECCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHCCC--CCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 736230688799978988760202336777404734512577656989982799--996300015799999999689999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 999998432333899999988528787544664458899899999999995402559999999999999998645
Q 003504 738 LGDDYPEEKEGNLVSWVRGLVRNNKGSRAIDPKIRDTGPEKQMEEALKIGYLCTADLPLKRPSMQQIVGLLKDIE 812 (815)
Q Consensus 738 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~~il~~L~~~~ 812 (815)
|.+....+ +. ..+ ... .+...|..++.++.+++.+||+.||++||+|++|++.|+.+.
T Consensus 248 f~~~~~~~----~~---~~i-~~~---------~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~~ 305 (308)
T 4gt4_A 248 YCGYSNQD----VV---EMI-RNR---------QVLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAWG 305 (308)
T ss_dssp TTTCCHHH----HH---HHH-HTT---------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred CCCCCHHH----HH---HHH-HCC---------CCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHCC
T ss_conf 99989999----99---999-819---------989996203699999999975879657929999999998531
No 4
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=395.34 Aligned_cols=282 Identities=24% Similarity=0.314 Sum_probs=219.8
Q ss_pred CCHHHHHHHHCCCCCCCEECCCCCEEEEEEECCC------CCEEEEEEEECCCCC-CHHHHHHHHHHHCCCCC-CCCEEE
Q ss_conf 5988999982299999801024980039999199------949999996148951-29999999999628999-992134
Q 003504 498 ITFADLLSATSNFDRGTLLAEGKFGPVYRGFLPG------GIHVAVKVLVHGSTL-TDQEAARELEYLGRIKH-PNLVPL 569 (815)
Q Consensus 498 ~~~~~l~~~~~~~~~~~~ig~G~~g~Vy~~~~~~------~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h-~niv~l 569 (815)
+...+++...++|++.+.||+|+||+||+|.+.+ ++.||||.+...... ..+.|.+|++++.+++| ||||++
T Consensus 54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l 133 (353)
T 4ase_A 54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 133 (353)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCCCCCEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 88855170579959820982178959999998688854477599999976235868999999999999975799848778
Q ss_pred EEEEEEC-CEEEEEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 2288829-946999980789994433003988875556787776455787653346887865589999999999999998
Q 003504 570 TGYCIAG-DQRIAIYDYMENGNLQNLLHDLPLGVQTTEDWSTDTWEEDGTNSIQNVGSEGLLTTWRFRHKIALGTARALA 648 (815)
Q Consensus 570 ~~~~~~~-~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~~L~ 648 (815)
+|+|... ...++|||||++|+|.++|+..+..... ............++|..+..++.|+|.||+
T Consensus 134 ~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~~~~~qia~gl~ 199 (353)
T 4ase_A 134 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVP--------------YKVAPEDLYKDFLTLEHLICYSFQVAKGME 199 (353)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCC--------------C-------CTTCBCHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCEEEEEEECCCCCCHHHHHHHCCCCCCC--------------CCCCCHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 899994697799999838989799999743566654--------------333410110356899999999999999987
Q ss_pred HHHCCCCCCEEECCCCCCCEEECCCCCEEECCCCCCEECCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 8840899991533688996477699981451444540028997---5432346654248843489999999768522288
Q 003504 649 FLHHGCSPPIIHRDIKASSVYLDMNLEPRLSDFGLAKIFGNGL---DEEIARGSPGYIPPEFAQPDSDFPTPKSDVYCYG 725 (815)
Q Consensus 649 ~LH~~~~~~ivH~Dlk~~Nili~~~~~~ki~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~sDvwSlG 725 (815)
||| +++||||||||+|||++.++.+||+|||+|+...... ......||+.|||||++.+.. ++.++||||||
T Consensus 200 yLH---~~~iiHRDLK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~--y~~ksDVwS~G 274 (353)
T 4ase_A 200 FLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRV--YTIQSDVWSFG 274 (353)
T ss_dssp HHH---HTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCC--CCHHHHHHHHH
T ss_pred HHH---HCCEECCCCCCCCEEECCCCCEEECCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCC--CCCCCCEEEHH
T ss_conf 676---2784357467211305799978979654322245688720325401466656989994699--99755374068
Q ss_pred HHHHHHHH-CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 99999883-99889999984323338999999885287875446644588998999999999954025599999999999
Q 003504 726 VVLLELIT-GKKPLGDDYPEEKEGNLVSWVRGLVRNNKGSRAIDPKIRDTGPEKQMEEALKIGYLCTADLPLKRPSMQQI 804 (815)
Q Consensus 726 vil~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~~i 804 (815)
|++|||+| |+.||.+....+ .+.. .+... .+...|..+++++.+++.+||+.||++||+|.+|
T Consensus 275 v~l~El~t~G~~Pf~~~~~~~---~~~~----~i~~g---------~~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~ei 338 (353)
T 4ase_A 275 VLLWEIFSLGASPYPGVKIDE---EFCR----RLKEG---------TRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSEL 338 (353)
T ss_dssp HHHHHHTTTSCCSSTTCCCSH---HHHH----HHHHT---------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred HHHHHHHHCCCCCCCCCCHHH---HHHH----HHHCC---------CCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHH
T ss_conf 999999818999999989899---9999----99738---------9888886578999999999768696679399999
Q ss_pred HHHHHHHHHC
Q ss_conf 9999864520
Q 003504 805 VGLLKDIEST 814 (815)
Q Consensus 805 l~~L~~~~~~ 814 (815)
++.|+++.++
T Consensus 339 l~~L~~llq~ 348 (353)
T 4ase_A 339 VEHLGNLLQA 348 (353)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999987
No 5
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=394.40 Aligned_cols=260 Identities=27% Similarity=0.384 Sum_probs=209.7
Q ss_pred HCCCCCCCEECCCCCEEEEEEECCCCCEEEEEEEECCCC--CCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCEEEEEEE
Q ss_conf 229999980102498003999919994999999614895--129999999999628999992134228882994699998
Q 003504 507 TSNFDRGTLLAEGKFGPVYRGFLPGGIHVAVKVLVHGST--LTDQEAARELEYLGRIKHPNLVPLTGYCIAGDQRIAIYD 584 (815)
Q Consensus 507 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 584 (815)
.+++.+.++||+|+||+||+|.+.+ .||||+++.... ...+.|.+|+.++++++|||||+++|+|.. +..++|||
T Consensus 35 ~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmE 111 (307)
T 3omv_A 35 ASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQ 111 (307)
T ss_dssp TTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEE
T ss_pred HHHEEEEEEEEECCCCEEEEEEECC--CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CEEEEEEE
T ss_conf 7994984498208886899999899--68999997268999999999999999985899887469999978-95899997
Q ss_pred ECCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCC
Q ss_conf 07899944330039888755567877764557876533468878655899999999999999988840899991533688
Q 003504 585 YMENGNLQNLLHDLPLGVQTTEDWSTDTWEEDGTNSIQNVGSEGLLTTWRFRHKIALGTARALAFLHHGCSPPIIHRDIK 664 (815)
Q Consensus 585 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~~L~~LH~~~~~~ivH~Dlk 664 (815)
||++|+|.++++.. ...++|..+..|+.|+|.||+||| +++|||||||
T Consensus 112 y~~gGsL~~~l~~~-----------------------------~~~l~~~~~~~i~~qia~gL~yLH---~~~IiHRDlK 159 (307)
T 3omv_A 112 WCEGSSLYKHLHVQ-----------------------------ETKFQMFQLIDIARQTAQGMDYLH---AKNIIHRDMK 159 (307)
T ss_dssp CCSSCBHHHHHHTS-----------------------------CCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCC
T ss_pred CCCCCCHHHHHHHC-----------------------------CCCCCHHHHHHHHHHHHHHHHHHH---HCCCCCCCCC
T ss_conf 48998788987524-----------------------------899999999999999999999997---7995278557
Q ss_pred CCCEEECCCCCEEECCCCCCEECCCCC---CCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 996477699981451444540028997---543234665424884348999-9999768522288999998839988999
Q 003504 665 ASSVYLDMNLEPRLSDFGLAKIFGNGL---DEEIARGSPGYIPPEFAQPDS-DFPTPKSDVYCYGVVLLELITGKKPLGD 740 (815)
Q Consensus 665 ~~Nili~~~~~~ki~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~-~~~~~~sDvwSlGvil~elltg~~pf~~ 740 (815)
|+|||++.++.+||+|||+|+...... .....+||+.|||||++.+.. ..++.++|||||||++|||+||+.||.+
T Consensus 160 p~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~ 239 (307)
T 3omv_A 160 SNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSH 239 (307)
T ss_dssp SSSEEEETTEEEEECCCSSCBC------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred HHHEEECCCCCEEEEECCCCEECCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 89978889990899441575424667764031564468772498786146899878687757289999999978899899
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9984323338999999885287875446644588998999999999954025599999999999999986452
Q 003504 741 DYPEEKEGNLVSWVRGLVRNNKGSRAIDPKIRDTGPEKQMEEALKIGYLCTADLPLKRPSMQQIVGLLKDIES 813 (815)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~~il~~L~~~~~ 813 (815)
....+. +....... ...|.. ...+..++.++.+++.+||+.||++||+|.+|++.|+.++.
T Consensus 240 ~~~~~~-------~~~~~~~~----~~~p~~-~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~ 300 (307)
T 3omv_A 240 INNRDQ-------IIFMVGRG----YASPDL-SKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQH 300 (307)
T ss_dssp CCCHHH-------HHHHHHTT----CCCCCS-TTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHT
T ss_pred CCHHHH-------HHHHHHCC----CCCCCC-CCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHC
T ss_conf 996999-------99999658----888872-00354456999999999757797689098999999999745
No 6
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=392.29 Aligned_cols=250 Identities=24% Similarity=0.339 Sum_probs=208.9
Q ss_pred HCCCCCCCEECCCCCEEEEEEEC-CCCCEEEEEEEECCCC--CCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCEEEEEE
Q ss_conf 22999998010249800399991-9994999999614895--12999999999962899999213422888299469999
Q 003504 507 TSNFDRGTLLAEGKFGPVYRGFL-PGGIHVAVKVLVHGST--LTDQEAARELEYLGRIKHPNLVPLTGYCIAGDQRIAIY 583 (815)
Q Consensus 507 ~~~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 583 (815)
.++|++.+.||+|+||+||+|+. .+++.||||++..... ...+.+.+|+.++++++|||||++++++.+.+..|+||
T Consensus 23 me~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVm 102 (350)
T 4b9d_A 23 MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVM 102 (350)
T ss_dssp CCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEE
T ss_conf 12558847970277939999998899989999998658789799999999999998779989891999999899999999
Q ss_pred EECCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCC
Q ss_conf 80789994433003988875556787776455787653346887865589999999999999998884089999153368
Q 003504 584 DYMENGNLQNLLHDLPLGVQTTEDWSTDTWEEDGTNSIQNVGSEGLLTTWRFRHKIALGTARALAFLHHGCSPPIIHRDI 663 (815)
Q Consensus 584 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~~L~~LH~~~~~~ivH~Dl 663 (815)
|||++|+|.+++... ....+++.....++.|++.||+||| +++|+||||
T Consensus 103 Ey~~gg~L~~~i~~~----------------------------~~~~~~e~~~~~~~~qi~~aL~ylH---~~~IiHRDl 151 (350)
T 4b9d_A 103 DYCEGGDLFKRINAQ----------------------------KGVLFQEDQILDWFVQICLALKHVH---DRKILHRDI 151 (350)
T ss_dssp ECCTTCBHHHHHHHT----------------------------TTCCCCHHHHHHHHHHHHHHHHHHH---HTTCEETTC
T ss_pred ECCCCCCHHHHHHHC----------------------------CCCCCCHHHHHHHHHHHHHHHHHHH---HCCEEECCC
T ss_conf 488998399999973----------------------------8999978999999999999999999---899151359
Q ss_pred CCCCEEECCCCCEEECCCCCCEECCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 8996477699981451444540028997-543234665424884348999999976852228899999883998899999
Q 003504 664 KASSVYLDMNLEPRLSDFGLAKIFGNGL-DEEIARGSPGYIPPEFAQPDSDFPTPKSDVYCYGVVLLELITGKKPLGDDY 742 (815)
Q Consensus 664 k~~Nili~~~~~~ki~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~sDvwSlGvil~elltg~~pf~~~~ 742 (815)
||+|||++.++.+||+|||+|+...... .....+||+.|||||++.+.. ++.++||||+||++|||++|+.||.+..
T Consensus 152 Kp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GT~~YmAPE~l~~~~--y~~~~DiwSlGvilyemltG~~PF~~~~ 229 (350)
T 4b9d_A 152 KSQNIFLTKDGTVQLGDFGIARVLNSTVELARACIGTPYYLSPEICENKP--YNNKSDIWALGCVLYELCTLKHAFEAGS 229 (350)
T ss_dssp CGGGEEECTTCCEEECSTTEESCCCHHHHHHHHHHSCCTTCCHHHHTTCC--CCHHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred CHHHEEECCCCCEEECCCCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCC--CCCHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 78997987899989764652144068854101457883603999987999--8959999999999999997879989969
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 8432333899999988528787544664458899899999999995402559999999999999
Q 003504 743 PEEKEGNLVSWVRGLVRNNKGSRAIDPKIRDTGPEKQMEEALKIGYLCTADLPLKRPSMQQIVG 806 (815)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~~il~ 806 (815)
. ...+........ + ..+...+.++.+|+.+||+.||++||++.|+++
T Consensus 230 ~-------~~~~~~i~~~~~------~----~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 230 M-------KNLVLKIISGSF------P----PVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp H-------HHHHHHHHHTCC------C----CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred H-------HHHHHHHHCCCC------C----CCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf 9-------999999980899------9----997557999999999985589667908999963
No 7
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=391.01 Aligned_cols=248 Identities=22% Similarity=0.331 Sum_probs=209.5
Q ss_pred CCCCCCCEECCCCCEEEEEEEC-CCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCEEEEEEEEC
Q ss_conf 2999998010249800399991-999499999961489512999999999962899999213422888299469999807
Q 003504 508 SNFDRGTLLAEGKFGPVYRGFL-PGGIHVAVKVLVHGSTLTDQEAARELEYLGRIKHPNLVPLTGYCIAGDQRIAIYDYM 586 (815)
Q Consensus 508 ~~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 586 (815)
+.|+..++||+|+||.||+|.. .+++.||||++........+.+.+|+.+|++++|||||++++++.+.+..|+|||||
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~ 230 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 230 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred HHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 84386169624818489999999999899999986255468999999999998579989871689999899999999698
Q ss_pred CCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 89994433003988875556787776455787653346887865589999999999999998884089999153368899
Q 003504 587 ENGNLQNLLHDLPLGVQTTEDWSTDTWEEDGTNSIQNVGSEGLLTTWRFRHKIALGTARALAFLHHGCSPPIIHRDIKAS 666 (815)
Q Consensus 587 ~~gsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~~L~~LH~~~~~~ivH~Dlk~~ 666 (815)
++|+|.+++... .+++.....++.|++.||+||| +++||||||||+
T Consensus 231 ~gG~L~~~i~~~-------------------------------~l~e~~~~~~~~qil~aL~ylH---~~~IiHRDiKp~ 276 (423)
T 4fie_A 231 EGGALTDIVTHT-------------------------------RMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSD 276 (423)
T ss_dssp TTEEHHHHHHHS-------------------------------CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSTT
T ss_pred CCCCHHHHHHCC-------------------------------CCCHHHHHHHHHHHHHHHHHHH---HCCEECCCCCHH
T ss_conf 998289887616-------------------------------9899999999999999999999---889044657877
Q ss_pred CEEECCCCCEEECCCCCCEECCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 6477699981451444540028997-543234665424884348999999976852228899999883998899999843
Q 003504 667 SVYLDMNLEPRLSDFGLAKIFGNGL-DEEIARGSPGYIPPEFAQPDSDFPTPKSDVYCYGVVLLELITGKKPLGDDYPEE 745 (815)
Q Consensus 667 Nili~~~~~~ki~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~sDvwSlGvil~elltg~~pf~~~~~~~ 745 (815)
|||++.++.+||+|||+|+.+.... .....+||+.|||||++.+.. |+.++||||+||++|||++|+.||.+....+
T Consensus 277 NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEvl~~~~--y~~~~DiWSlGvilyeml~G~~PF~~~~~~~ 354 (423)
T 4fie_A 277 SILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLP--YGPEVDIWSLGIMVIEMVDGEPPYFNEPPLK 354 (423)
T ss_dssp TEEECTTCCEEECCCTTCEECCSSCCCBCCCEECTTTCCHHHHTTCC--BCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH
T ss_pred HEEECCCCCEEEECCCCCEECCCCCCCCCCCCCCCCCCCHHHHCCCC--CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH
T ss_conf 78985899989803726547778876434666474727999977999--9968999999999999997879989869999
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 2333899999988528787544664458899899999999995402559999999999999
Q 003504 746 KEGNLVSWVRGLVRNNKGSRAIDPKIRDTGPEKQMEEALKIGYLCTADLPLKRPSMQQIVG 806 (815)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~~il~ 806 (815)
.+..+.... .+. ...+..++.++.+|+.+||..||++||++.|+++
T Consensus 355 -------~~~~i~~~~------~~~--~~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 355 -------AMKMIRDNL------PPR--LKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp -------HHHHHHHSC------CCC--CSCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred -------HHHHHHCCC------CCC--CCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf -------999997279------988--7650129999999999986789568909999960
No 8
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=390.75 Aligned_cols=248 Identities=22% Similarity=0.334 Sum_probs=209.1
Q ss_pred CCCCCCCEECCCCCEEEEEEEC-CCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCEEEEEEEEC
Q ss_conf 2999998010249800399991-999499999961489512999999999962899999213422888299469999807
Q 003504 508 SNFDRGTLLAEGKFGPVYRGFL-PGGIHVAVKVLVHGSTLTDQEAARELEYLGRIKHPNLVPLTGYCIAGDQRIAIYDYM 586 (815)
Q Consensus 508 ~~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 586 (815)
+.|+..++||+|+||.||+|.. .+++.||||++........+.+.+|+.++++++|||||++++++.+.+..|+|||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 75387079602728299999998999899999985276568999999999998679989991999999899999999698
Q ss_pred CCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 89994433003988875556787776455787653346887865589999999999999998884089999153368899
Q 003504 587 ENGNLQNLLHDLPLGVQTTEDWSTDTWEEDGTNSIQNVGSEGLLTTWRFRHKIALGTARALAFLHHGCSPPIIHRDIKAS 666 (815)
Q Consensus 587 ~~gsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~~L~~LH~~~~~~ivH~Dlk~~ 666 (815)
++|+|.+++.. ..+++.....++.|++.||+||| +++|+||||||+
T Consensus 154 ~gg~L~~~l~~-------------------------------~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~ 199 (346)
T 4fih_A 154 EGGALTDIVTH-------------------------------TRMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSD 199 (346)
T ss_dssp TTEEHHHHHHH-------------------------------SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGG
T ss_pred CCCCHHHHHHC-------------------------------CCCCHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCHH
T ss_conf 99808999871-------------------------------89899999999999999999999---888355627889
Q ss_pred CEEECCCCCEEECCCCCCEECCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 6477699981451444540028997-543234665424884348999999976852228899999883998899999843
Q 003504 667 SVYLDMNLEPRLSDFGLAKIFGNGL-DEEIARGSPGYIPPEFAQPDSDFPTPKSDVYCYGVVLLELITGKKPLGDDYPEE 745 (815)
Q Consensus 667 Nili~~~~~~ki~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~sDvwSlGvil~elltg~~pf~~~~~~~ 745 (815)
|||++.++.+||+|||+|+.+.... .....+||+.|||||++.+.. |+.++||||+||++|||++|+.||.+....+
T Consensus 200 NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEvl~~~~--y~~~~DiWSlGvilyeml~G~~PF~~~~~~~ 277 (346)
T 4fih_A 200 SILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLP--YGPEVDIWSLGIMVIEMVDGEPPYFNEPPLK 277 (346)
T ss_dssp GEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCC--BCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH
T ss_pred HEEECCCCCEEEECCCCCEECCCCCCCCCCCCCCCCCCCHHHHCCCC--CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH
T ss_conf 97887999889902757536678877534656275827999977999--9968999999999999997879989859999
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 2333899999988528787544664458899899999999995402559999999999999
Q 003504 746 KEGNLVSWVRGLVRNNKGSRAIDPKIRDTGPEKQMEEALKIGYLCTADLPLKRPSMQQIVG 806 (815)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~~il~ 806 (815)
.+..+.... .+ ....+...+.++.+++.+||..||++||++.|+++
T Consensus 278 -------~~~~i~~~~------~~--~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 278 -------AMKMIRDNL------PP--RLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 323 (346)
T ss_dssp -------HHHHHHHSS------CC--CCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred -------HHHHHHCCC------CC--CCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf -------999997179------99--88750229999999999986799568909999960
No 9
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=387.38 Aligned_cols=251 Identities=20% Similarity=0.209 Sum_probs=209.1
Q ss_pred CCCCCCCEECCCCCEEEEEEEC-CCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCEEEEEEEEC
Q ss_conf 2999998010249800399991-999499999961489512999999999962899999213422888299469999807
Q 003504 508 SNFDRGTLLAEGKFGPVYRGFL-PGGIHVAVKVLVHGSTLTDQEAARELEYLGRIKHPNLVPLTGYCIAGDQRIAIYDYM 586 (815)
Q Consensus 508 ~~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 586 (815)
+.|...++||+|+||.||+|+. .+++.||||+++.... ..+|+.++++++|||||++++++.+.+..|+|||||
T Consensus 58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 132 (336)
T 4g3f_A 58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELL 132 (336)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHHH-----HHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 351768685138780999999889998999999788886-----999999998579989993999999899999999665
Q ss_pred CCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 89994433003988875556787776455787653346887865589999999999999998884089999153368899
Q 003504 587 ENGNLQNLLHDLPLGVQTTEDWSTDTWEEDGTNSIQNVGSEGLLTTWRFRHKIALGTARALAFLHHGCSPPIIHRDIKAS 666 (815)
Q Consensus 587 ~~gsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~~L~~LH~~~~~~ivH~Dlk~~ 666 (815)
++|+|.++++. ...+++.....++.|++.||+||| +++|+||||||+
T Consensus 133 ~gg~L~~~l~~------------------------------~~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~ 179 (336)
T 4g3f_A 133 EGGSLGQLIKQ------------------------------MGCLPEDRALYYLGQALEGLEYLH---TRRILHGDVKAD 179 (336)
T ss_dssp TTCBHHHHHHH------------------------------HSSCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCCGG
T ss_pred CCCCHHHHHHH------------------------------CCCCCHHHHHHHHHHHHHHHHHHH---HCCCEECCCCHH
T ss_conf 99869999987------------------------------699999999999999999999999---889042616778
Q ss_pred CEEECCCC-CEEECCCCCCEECCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 64776999-81451444540028997------543234665424884348999999976852228899999883998899
Q 003504 667 SVYLDMNL-EPRLSDFGLAKIFGNGL------DEEIARGSPGYIPPEFAQPDSDFPTPKSDVYCYGVVLLELITGKKPLG 739 (815)
Q Consensus 667 Nili~~~~-~~ki~Dfg~a~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~~sDvwSlGvil~elltg~~pf~ 739 (815)
|||++.++ ++||+|||+|+.+.... .....+||+.|||||++.+.. ++.++||||+||++|||++|+.||.
T Consensus 180 NILl~~~g~~vKl~DFGla~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~--y~~~~DiwSlGvilyemltG~~Pf~ 257 (336)
T 4g3f_A 180 NVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKP--CDAKVDIWSSCCMMLHMLNGCHPWT 257 (336)
T ss_dssp GEEECTTSCCEEECCCTTCEEC------------CCCCCCGGGCCHHHHTTCC--CCTHHHHHHHHHHHHHHHHSSCSST
T ss_pred HEEEECCCCEEEEEECCCCEECCCCCCCCCEECCCCCCCCCCCCCHHHHCCCC--CCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 87995899979996278776856787654022178545580200899988999--8908999999999999997869989
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99984323338999999885287875446644588998999999999954025599999999999999986452
Q 003504 740 DDYPEEKEGNLVSWVRGLVRNNKGSRAIDPKIRDTGPEKQMEEALKIGYLCTADLPLKRPSMQQIVGLLKDIES 813 (815)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~~il~~L~~~~~ 813 (815)
+....+....+. ... +. ....+..++.++.+++.+||+.||.+|||+.|+++.|..+.+
T Consensus 258 ~~~~~~~~~~i~-------~~~-------~~-~~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~ 316 (336)
T 4g3f_A 258 QYFRGPLCLKIA-------SEP-------PP-IREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQ 316 (336)
T ss_dssp TTCCSCCHHHHH-------HSC-------CG-GGGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHH-------CCC-------CC-CHHCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 989999999998-------089-------98-002586679999999999762897689599999999999975
No 10
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=1.00 E-value=1 Score=384.66 Aligned_cols=269 Identities=23% Similarity=0.294 Sum_probs=204.6
Q ss_pred CCCCCCCEECCCCCEEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECC----EEEEEE
Q ss_conf 2999998010249800399991999499999961489512999999999962899999213422888299----469999
Q 003504 508 SNFDRGTLLAEGKFGPVYRGFLPGGIHVAVKVLVHGSTLTDQEAARELEYLGRIKHPNLVPLTGYCIAGD----QRIAIY 583 (815)
Q Consensus 508 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~----~~~lv~ 583 (815)
++|.+.++||+|+||+||+|.+. |+.||||++.... .....++.|+..+.+++|||||+++|+|...+ ..++||
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~~-g~~VAvK~l~~~~-~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~ 80 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSRE-ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 80 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEET-TEEEEEEEECGGG-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred CEEEEEEEEEECCCEEEEEEEEC-CEEEEEEEECCCC-HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEE
T ss_conf 58999789840899399999999-9899999988313-366999999999860899988709999984688723788775
Q ss_pred EECCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC-----CCCCE
Q ss_conf 8078999443300398887555678777645578765334688786558999999999999999888408-----99991
Q 003504 584 DYMENGNLQNLLHDLPLGVQTTEDWSTDTWEEDGTNSIQNVGSEGLLTTWRFRHKIALGTARALAFLHHG-----CSPPI 658 (815)
Q Consensus 584 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~~L~~LH~~-----~~~~i 658 (815)
|||++|+|.++++. ..++|..+.+++.|+|.||+|||+. ..++|
T Consensus 81 Ey~~~gsL~~~l~~-------------------------------~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~I 129 (303)
T 3hmm_A 81 DYHEHGSLFDYLNR-------------------------------YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAI 129 (303)
T ss_dssp ECCTTCBHHHHHHH-------------------------------CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCE
T ss_pred CCCCCCCHHHHHHH-------------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 17899968999975-------------------------------79998999999999999999999852400478987
Q ss_pred EECCCCCCCEEECCCCCEEECCCCCCEECCCCCC-----CCCCCCCCCCCCCCCCCCCCC----CCCCCCCCHHHHHHHH
Q ss_conf 5336889964776999814514445400289975-----432346654248843489999----9997685222889999
Q 003504 659 IHRDIKASSVYLDMNLEPRLSDFGLAKIFGNGLD-----EEIARGSPGYIPPEFAQPDSD----FPTPKSDVYCYGVVLL 729 (815)
Q Consensus 659 vH~Dlk~~Nili~~~~~~ki~Dfg~a~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~----~~~~~sDvwSlGvil~ 729 (815)
+||||||+|||++.++++||+|||+|+....... ....+||+.|||||++.+... .++.++|||||||++|
T Consensus 130 iHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~ 209 (303)
T 3hmm_A 130 AHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFW 209 (303)
T ss_dssp ECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 62467842089988997899847987455677773221046424664626988845654556776570676664799999
Q ss_pred HHHHCCCCCCCCCCCCC--------CCCHHHHHHHHHHCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 98839988999998432--------3338999999885287875446644588-99899999999995402559999999
Q 003504 730 ELITGKKPLGDDYPEEK--------EGNLVSWVRGLVRNNKGSRAIDPKIRDT-GPEKQMEEALKIGYLCTADLPLKRPS 800 (815)
Q Consensus 730 elltg~~pf~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~cl~~dP~~RPs 800 (815)
||+||+.||......+. ...... +....... ..+|.+... ...+++..+.+++.+||+.||++|||
T Consensus 210 El~tg~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~----~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt 284 (303)
T 3hmm_A 210 EIARRCSIGGIHEDYQLPYYDLVPSDPSVEE-MRKVVCEQ----KLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLT 284 (303)
T ss_dssp HHHHTBCBTTBCCCCCCTTTTTSCSSCCHHH-HHHHHTTS----CCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCC
T ss_pred HHHHCCCCCCCCCCCCCCCHHCCCCCCHHHH-HHHHHHCC----CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCC
T ss_conf 9987899877665223531002545430999-99987502----579988765566589999999999976059757959
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 99999999864520
Q 003504 801 MQQIVGLLKDIEST 814 (815)
Q Consensus 801 ~~~il~~L~~~~~~ 814 (815)
|.+|++.|+++.+.
T Consensus 285 ~~ei~~~L~~l~~~ 298 (303)
T 3hmm_A 285 ALRIKKTLSQLSQQ 298 (303)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999988987
Done!