Query 003505
Match_columns 815
No_of_seqs 346 out of 827
Neff 4.0
Searched_HMMs 29240
Date Tue Mar 26 18:25:30 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003505.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1553-1557//hhsearch_pdb/003505hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 1.0 1 1 213.9 13.9 115 36-150 5-121 (130)
2 4i1k_A B3 domain-containing tr 1.0 1 1 139.7 12.0 98 41-148 45-144 (146)
3 1yel_A AT1G16640; CESG, protei 1.0 1 1 111.1 10.7 95 42-147 8-102 (104)
4 1na6_A Ecorii, restriction end 1.0 1 1 42.1 8.0 93 41-134 17-123 (404)
5 4b8c_D Glucose-repressible alc 1.0 1 1 33.5 3.6 97 388-489 30-126 (727)
6 2kkc_A Sequestosome-1; P62, PB 1.0 1 1 31.4 4.3 63 679-747 2-80 (102)
7 2ktr_A Sequestosome-1; autopha 1.0 1 1 30.0 4.3 62 679-746 17-94 (117)
8 1vd2_A Protein kinase C, IOTA 1.0 1 1 27.2 7.3 55 682-743 6-60 (89)
9 1q1o_A Cell division control p 1.0 1 1 25.4 6.6 75 680-756 3-85 (98)
10 1oey_J P40-PHOX, neutrophil cy 1.0 1 1 25.0 5.9 47 698-770 28-74 (107)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=1.00 E-value=1 Score=213.90 Aligned_cols=115 Identities=29% Similarity=0.479 Sum_probs=106.0
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCCEEEECCHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCCH
Q ss_conf 99999850399943736699899403501016330999999999996299999679991797999808996125604501
Q 003505 36 APNKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWS 115 (815)
Q Consensus 36 ~~~~~~~~~F~K~LT~SDV~~~GrlsIPk~~Ae~~FPpLd~~~~~p~q~L~v~Dl~G~~W~FR~iyrg~pkrhlLTtGWs 115 (815)
...+...++|+|+||+|||+++++|+||+++|++|||+++..+.+++++|.++|.+|++|+|||+||+++++|+|++||+
T Consensus 5 ~~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~ 84 (130)
T 1wid_A 5 SSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWS 84 (130)
T ss_dssp ---CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHH
T ss_pred CCCCCCCCEEEEEEEHHHCCCCCEEEECHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCHH
T ss_conf 78999862499998557718977799678999966886544457883899999589999999999978999638837748
Q ss_pred HHHCCCCCCCCCEEEEEECC--CCCEEEEEEECCCCC
Q ss_conf 12202588779889999725--981999999458999
Q 003505 116 VFVSAKRLVAGDSVLFIWNE--KNQLLLGIRRATRPQ 150 (815)
Q Consensus 116 ~FVk~KkL~aGDsVvF~R~e--~G~L~VGIRRa~r~~ 150 (815)
.||++|+|++||.|+|++.+ +++|+|++||+.++.
T Consensus 85 ~FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 85 RFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp HHHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred HHHHHCCCCCCCEEEEEEECCCCCEEEEEEEECCCCC
T ss_conf 8778719988989999995389968999999899998
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=139.72 Aligned_cols=98 Identities=19% Similarity=0.300 Sum_probs=86.4
Q ss_pred CCEEEEEECCCCCCCCCCCEEEECCHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCCHHHHCC
Q ss_conf 85039994373669989940350101633099999999999629999967999179799980899612560450112202
Q 003505 41 PTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSA 120 (815)
Q Consensus 41 ~~~~F~K~LT~SDV~~~GrlsIPk~~Ae~~FPpLd~~~~~p~q~L~v~Dl~G~~W~FR~iyrg~pkrhlLTtGWs~FVk~ 120 (815)
..++|.|+||+||+.....|.||+++|+.+||..+ ..+.++|. |+.|.|+|+|++. ++.|++||..||++
T Consensus 45 ~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~d 114 (146)
T 4i1k_A 45 TNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTLE 114 (146)
T ss_dssp SSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHHH
T ss_pred CCCEEEEEECCHHCCCCCEEEECHHHHHHHCCCCC-------EEEEEEEC-CCEEEEEEEEECC--CEEECCCHHHHHHH
T ss_conf 99989999785661898679909999997488888-------37999979-9478989999589--07877763898887
Q ss_pred CCCCCCCEEEEEECCCC--CEEEEEEECCC
Q ss_conf 58877988999972598--19999994589
Q 003505 121 KRLVAGDSVLFIWNEKN--QLLLGIRRATR 148 (815)
Q Consensus 121 KkL~aGDsVvF~R~e~G--~L~VGIRRa~r 148 (815)
++|++||.|+|...++. .+.|.|.|+..
T Consensus 115 n~L~~GD~cvFeli~~~~~~f~V~IfR~~e 144 (146)
T 4i1k_A 115 NNLGEGDVCVFELLRTRDFVLKVTAFRVNE 144 (146)
T ss_dssp TTCCTTCEEEEEECSSSSCEEEEEEECCC-
T ss_pred CCCCCCCEEEEEEECCCCEEEEEEEEECCC
T ss_conf 599989899999936986599999994457
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=1.00 E-value=1 Score=111.12 Aligned_cols=95 Identities=23% Similarity=0.403 Sum_probs=81.9
Q ss_pred CEEEEEECCCCCCCCCCCEEEECCHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCCHHHHCCC
Q ss_conf 50399943736699899403501016330999999999996299999679991797999808996125604501122025
Q 003505 42 TNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAK 121 (815)
Q Consensus 42 ~~~F~K~LT~SDV~~~GrlsIPk~~Ae~~FPpLd~~~~~p~q~L~v~Dl~G~~W~FR~iyrg~pkrhlLTtGWs~FVk~K 121 (815)
.+.|.|+|+++|.. .+|.||+++++.+.+.+ ...+.++|..|++|++++.+++ +++.|+.||..||+++
T Consensus 8 ~p~F~K~l~~~~~~--~~L~IP~~F~~~~~~~~-------~~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~~ 76 (104)
T 1yel_A 8 EVQFMKPFISEKSS--KSLEIPLGFNEYFPAPF-------PITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKDN 76 (104)
T ss_dssp CEEEEEECCHHHHT--TCEECCHHHHTTCCCCC-------CSEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHHH
T ss_pred CCCEEEEECCCCCC--CEEECCHHHHHHCCCCC-------CCEEEEECCCCCEEEEEEEEEC--CCEEECCCHHHHHHHC
T ss_conf 98789998777755--31888999998648669-------9889999799999999999989--9499862949999975
Q ss_pred CCCCCCEEEEEECCCCCEEEEEEECC
Q ss_conf 88779889999725981999999458
Q 003505 122 RLVAGDSVLFIWNEKNQLLLGIRRAT 147 (815)
Q Consensus 122 kL~aGDsVvF~R~e~G~L~VGIRRa~ 147 (815)
+|++||.++|....+..+.|.|-|..
T Consensus 77 ~L~~GD~lvF~~~~~~~f~V~If~~s 102 (104)
T 1yel_A 77 NLEDGKYLQFIYDRDRTFYVIIYGHN 102 (104)
T ss_dssp TCCTTCEEEEEECSSSEEEEEEECSS
T ss_pred CCCCCCEEEEEECCCCEEEEEEECCC
T ss_conf 99989899999858976999997898
No 4
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=1.00 E-value=1 Score=42.14 Aligned_cols=93 Identities=22% Similarity=0.312 Sum_probs=67.7
Q ss_pred CCEEEEEECCCCCCCCC----CCEEEECCHHHHHCCCCC-CCCCCCCEEEEEE--ECCCCEEEEEEEEEC------CCCC
Q ss_conf 85039994373669989----940350101633099999-9999996299999--679991797999808------9961
Q 003505 41 PTNYFCKTLTASDTSTH----GGFSVPRRAAEKVFPPLD-YSQTPPAQELIAR--DLHDNEWKFRHIFRG------QPKR 107 (815)
Q Consensus 41 ~~~~F~K~LT~SDV~~~----GrlsIPk~~Ae~~FPpLd-~~~~~p~q~L~v~--Dl~G~~W~FR~iyrg------~pkr 107 (815)
....|+|.|++-|++.. .++.+|+..+..+||.|+ ..+..+.+.+.+. |...-++.++.+|.+ ++..
T Consensus 17 ~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnE 96 (404)
T 1na6_A 17 NYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNE 96 (404)
T ss_dssp SEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCE
T ss_pred CCHHEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCCCCC
T ss_conf 60413577224457887776444578568999863548986556776315778416888427789998326466898874
Q ss_pred EEECCCCH-HHHCCCCCCCCCEEEEEEC
Q ss_conf 25604501-1220258877988999972
Q 003505 108 HLLTTGWS-VFVSAKRLVAGDSVLFIWN 134 (815)
Q Consensus 108 hlLTtGWs-~FVk~KkL~aGDsVvF~R~ 134 (815)
|.||. |. .+.-.....+||.++|.+.
T Consensus 97 yRLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 97 KRITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEEEE-CCCCCCCCCCCCCCCEEEEEEE
T ss_conf 58840-2789865466888788999872
No 5
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=1.00 E-value=1 Score=33.46 Aligned_cols=97 Identities=15% Similarity=0.026 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 74323688898514566666878888643437768999999999987411035888989999985431004447656853
Q 003505 388 SQNVSNGTASMIPRQMLQQSQAQNALLQSFQENQASAQAQLLQQQLQRQHSYNEQRQQQQQVQQSQQLHQLSVQPQISNV 467 (815)
Q Consensus 388 pq~~~~~~~~~~~~q~~qq~~~~~~~~~~~~~~~~~~~~~~~qq~l~~~~~~~~~~~~qq~~~~~~~~~~~~~~~~~~~~ 467 (815)
|.+....-.+.+-....++.+.|....+..++.+.+.+.+-.+++.++++ +++||||+|+++|++.+..++....
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----q~q~~~qqq~~~q~~~~~~~~~~~~ 104 (727)
T 4b8c_D 30 PLLHPHLDDPSLLNNPIWKLQLHLAAVSAQSLGQPNIYARQNAMKKYLAT-----QQAQQAQQQAQQQAQQQVPGPFGPG 104 (727)
T ss_dssp TTTSGGGTSCCCTTSHHHHHHHHHHHHHHHSTTSTTHHHHHHHHHHHC--------------------------------
T ss_pred CCCCCCCCCCHHCCCCHHHHHHHHHHHCHHCCCCCHHHHHHHHHHHHHHH-----HCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 55567778802104822777778876331212660499999999988750-----1306678887760667666765668
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4555545577899999766765
Q 003505 468 ISTLPHLASSSQSQPPTLQTVA 489 (815)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~ 489 (815)
.....+..+..+.+.+..+..+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~s 126 (727)
T 4b8c_D 105 PQAAPPALQPTDFQQSHIAEAS 126 (727)
T ss_dssp ----------------------
T ss_pred CCCCCCCHHHHHHCCCCCCCHH
T ss_conf 6667520002321265665333
No 6
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=1.00 E-value=1 Score=31.39 Aligned_cols=63 Identities=21% Similarity=0.240 Sum_probs=43.4
Q ss_pred CCCCCEEEEECCC-----CCEEEECCCC-----------CCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCEE
Q ss_conf 9975627982167-----5214530599-----------89979999999998458787689999850999982789657
Q 003505 679 PPTRTFVKVHKSG-----SFGRSLDISK-----------FSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVL 742 (815)
Q Consensus 679 ~~~~~~VKV~m~G-----~iGRkiDL~~-----------~~sY~eL~~~L~~MF~~eg~l~d~~~s~~~lvY~D~EgD~m 742 (815)
|...+-||+|..| .--|..-+.. -.+|++|+..+.++|..- .+..|++.|.|.|||..
T Consensus 2 ~~m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l------~~~~f~l~Y~DedGDlI 75 (102)
T 2kkc_A 2 PHMSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPAL------RPGGFQAHYRAERGDLV 75 (102)
T ss_dssp -CCEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTS------CSSCEEEEEECTTCCEE
T ss_pred CCCEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC------CCCCEEEEEECCCCCEE
T ss_conf 974699999981677778726998833677754222446666999999999975445------79838999998999989
Q ss_pred ECCCC
Q ss_conf 62786
Q 003505 743 LLGDD 747 (815)
Q Consensus 743 LvGDv 747 (815)
-..++
T Consensus 76 tiSsD 80 (102)
T 2kkc_A 76 AFSSD 80 (102)
T ss_dssp EECSH
T ss_pred EECCH
T ss_conf 76488
No 7
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=1.00 E-value=1 Score=30.03 Aligned_cols=62 Identities=19% Similarity=0.203 Sum_probs=43.1
Q ss_pred CCCCCEEEEECCC-----CCEEEECCC-----------CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCEE
Q ss_conf 9975627982167-----521453059-----------989979999999998458787689999850999982789657
Q 003505 679 PPTRTFVKVHKSG-----SFGRSLDIS-----------KFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVL 742 (815)
Q Consensus 679 ~~~~~~VKV~m~G-----~iGRkiDL~-----------~~~sY~eL~~~L~~MF~~eg~l~d~~~s~~~lvY~D~EgD~m 742 (815)
+...+-||+|..| .--|..-|. .-.+|.+|+..+.++|.. + .+..|++.|.|.|||+.
T Consensus 17 ~~~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~---L---~~~~f~l~YkDEdGDlI 90 (117)
T 2ktr_A 17 HMGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPA---L---RPGGFQAHYRAERGDLV 90 (117)
T ss_dssp ---CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTT---S---CSSCEEEEEECTTCCEE
T ss_pred CCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCC---C---CCCCEEEEEECCCCCEE
T ss_conf 44528999998067778872799884267774311245677799999999997345---5---89838999998999989
Q ss_pred ECCC
Q ss_conf 6278
Q 003505 743 LLGD 746 (815)
Q Consensus 743 LvGD 746 (815)
-...
T Consensus 91 tISs 94 (117)
T 2ktr_A 91 AFSS 94 (117)
T ss_dssp EECS
T ss_pred EECC
T ss_conf 7638
No 8
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=1.00 E-value=1 Score=27.20 Aligned_cols=55 Identities=18% Similarity=0.225 Sum_probs=42.0
Q ss_pred CCEEEEECCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCEEE
Q ss_conf 56279821675214530599899799999999984587876899998509999827896576
Q 003505 682 RTFVKVHKSGSFGRSLDISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLL 743 (815)
Q Consensus 682 ~~~VKV~m~G~iGRkiDL~~~~sY~eL~~~L~~MF~~eg~l~d~~~s~~~lvY~D~EgD~mL 743 (815)
..=||++-.|. .|-+.+..--+|++|...+..+|.+.. ...+++.|.|.|||+.-
T Consensus 6 ~vkvK~~~~gd-i~~~~v~~~i~~~~L~~kv~~~~~~~~------~~~f~lky~DEeGD~it 60 (89)
T 1vd2_A 6 QVRVKAYYRGD-IMITHFEPSISFEGLCNEVRDMCSFDN------EQLFTMKWIDEEGDPCT 60 (89)
T ss_dssp CEEEEEESSSC-EEEEEECTTCCHHHHHHHHHHHTTCCS------SCCEEEEECCSSSCCEE
T ss_pred EEEEEEEECCE-EEEEECCCCCCHHHHHHHHHHHHCCCC------CCEEEEEEECCCCCCCC
T ss_conf 18999994785-999987999899999999999968898------98279999989979503
No 9
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=1.00 E-value=1 Score=25.36 Aligned_cols=75 Identities=15% Similarity=0.248 Sum_probs=54.9
Q ss_pred CCCCEEEEECCC-----CCE--EEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCEEECC-CCCHHH
Q ss_conf 975627982167-----521--453059989979999999998458787689999850999982789657627-864444
Q 003505 680 PTRTFVKVHKSG-----SFG--RSLDISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLG-DDPWQE 751 (815)
Q Consensus 680 ~~~~~VKV~m~G-----~iG--RkiDL~~~~sY~eL~~~L~~MF~~eg~l~d~~~s~~~lvY~D~EgD~mLvG-DvPWe~ 751 (815)
....-|||+-.. +++ |.|=+..--+|++|...+.+-|++.. -++ .....++-|+|.|||+...+ |+=|++
T Consensus 3 ~~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~-~~~-i~~~~klkYkDEdGD~Vtl~sddDl~~ 80 (98)
T 1q1o_A 3 LGSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTH-NNN-ISPITKIKYQDEDGDFVVLGSDEDWNV 80 (98)
T ss_dssp SSCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHC-SSC-CCCCCCEEEECSSSCEEEECSHHHHHH
T ss_pred CCCEEEEEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCC-CCC-CCCEEEEEEECCCCCEEEECCHHHHHH
T ss_conf 751899999357656666686799996699989999999999976786-545-465047999969999887728899999
Q ss_pred HHCCE
Q ss_conf 41030
Q 003505 752 FVNNV 756 (815)
Q Consensus 752 Fv~sv 756 (815)
-+.++
T Consensus 81 A~e~~ 85 (98)
T 1q1o_A 81 AKEML 85 (98)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99997
No 10
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=1.00 E-value=1 Score=25.03 Aligned_cols=47 Identities=30% Similarity=0.409 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCHHHHHCCEEEEEEECHHHHHHC
Q ss_conf 0599899799999999984587876899998509999827896576278644444103017798092766300
Q 003505 698 DISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVGYIKILSPLEVQQM 770 (815)
Q Consensus 698 DL~~~~sY~eL~~~L~~MF~~eg~l~d~~~s~~~lvY~D~EgD~mLvGDvPWe~Fv~svkrl~Il~~~e~~~m 770 (815)
||+.--.|.||..-..+-|. +.+-.|-|.|.|||+ |||++.+++.-|
T Consensus 28 dl~~~P~ykdLl~lmr~~F~---------~~DIaLNYrD~eGDL-----------------IrilddeDv~lm 74 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQ---------REDIALNYRDAEGDL-----------------VRLLSDEDVALM 74 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHC---------CSSEEEEEECTTSCE-----------------EECCSHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHC---------CCCEEEEEECCCCCE-----------------EEECCHHHHHHH
T ss_conf 64669778999999998734---------100466303688998-----------------998165778999
Done!