Citrus Sinensis ID: 003506

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-----
MHADVETDEVYAQMTLQPLSPQEQKDVYLLPAELGAPNKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYSSPFPLRLKRPWPSGLPSFHGMKDGDMSINSPLMWLQGGVGDQGIQSLNFQGYGVTPWMQPRLDASIPGLQPDVYQAMAAAALQEMRTVDSSKLASQSLLQFQQSQNVSNGTASMIPRQMLQQSQAQNALLQSFQENQASAQAQLLQQQLQRQHSYNEQRQQQQQVQQSQQLHQLSVQPQISNVISTLPHLASSSQSQPPTLQTVASQCQQSNFSDSLGNPIASSDVSSMHTILGSLSQAGASHLLNSNASNPIISSSAMLTKQVTVDNHVPSAVSHCILPQVEQLGAQQSNVSELASLLPPFPGREYSSYHGSGDPQNNLLFGVSIDSSLMGQNGLPNLKNISSENESLSLPYAASNFTNNVGTDFPLNSDMTTSSCVDESGFLQSSENVDQVNPPTRTFVKVHKSGSFGRSLDISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVGYIKILSPLEVQQMGKGLSPVTSGPGQRLSSNNNFDDYVSRQELRSSSNGVASMGSINY
cccccccccEEEEEEEEEcccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEEEcccccccccccccccccccccccccEEEEEEcccccEEEEEEEEccccccccccccccccccccHHHHHHHHHHccccEEEEEccccccccccccHHHHHHHHHccccccccEEEEEcccccccEEEEEEEEEEEcccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccHHHcccccccccccccccccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccEEEccccccHHHHHHHHHHHHccccccccccccccEEEEEcccccEEEcccccHHHHHHcccEEEEEcHHHHHHcccccccccccccccccccccccccccccccccccccccccccccc
ccccccccEEEEEEEEccccccccccccccccccccccccccccEEEEEccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHccccEEEEEEEccccccEEEccccEEEEEccEEEcccEEEEEEcccccEEEEEEEcccccccccccEEccccHHHHHHHHHHHHHHccccEEEEEccccccccEEEEHHHHHHHHHcccEEEEEEEEEEEcccccccEEEEEEEEEccccccccccccccEEEEEEccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccHHcccccccHHccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccHccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEccccHHHHHHHHHHHHccccccccccccccEEEEEcccccEEEEccccHHHHHHHHEEEEEEcHHHHHHcccccccccccccccccccccccccccccccccccccccccccccc
MHADVETDEVYAQmtlqplspqeqkdvyllpaelgapnkqptnyfcktltasdtsthggfsvprraaekvfppldysqtppaqeLIARDlhdnewkfrhifrgqpkrhlltTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGirratrpqtvmpssvlssdSMHIGLLAAAAHAAatnsrftifynpraspsefvIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGtitgisdldpvrwpnshwrsvkvgwdestagerqprvslweieplttfpmysspfplrlkrpwpsglpsfhgmkdgdmsinsplmwlqggvgdqgiqslnfqgygvtpwmqprldasipglqpDVYQAMAAAALQEMRTVDSSKLASQSLLQFQqsqnvsngtasmiprqmLQQSQAQNALLQSFQENQASAQAQLLQQQLQRQHSYNEQRQQQQQVQQSQQLHQLSVQPQISNVistlphlasssqsqpptlqtvasqcqqsnfsdslgnpiassdvssmHTILGSLSQAgashllnsnasnpiisssamltkqvtvdnhvpsavshcilpqveqlgaqqsNVSELasllppfpgreyssyhgsgdpqnnllfgvsidsslmgqnglpnlknisseneslslpyaasnftnnvgtdfplnsdmttsscvdesgflqssenvdqvnpptrTFVKVhksgsfgrsldiskfsSYDELRSELARMFglegqledpqrsgwqlVFVDRendvlllgddpwqefvnnvgyikilsplevqqmgkglspvtsgpgqrlssnnnfddyvsrqelrsssngvasmgsiny
MHADVETDEVYAQmtlqplspqEQKDVYLLPAELGAPNKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTItgisdldpvrwpNSHWRsvkvgwdestagerqprvslweiePLTTFPMYSSPFPLRLKRPWPSGLPSFHGMKDGDMSINSPLMWLQGGVGDQGIQSLNFQGYGVTPWMQPRLDASIPGLQPDVYQAMAAAALQEMRTVDSSKLASQSLLQFQQSQNVSNGTASMIPRQMLQQSQAQNALLQSFQENQASAQAQLLQQQLQRQHSYNEQRQQQQQVQQSQQLHQLSVQPQISNVISTLPHLASSSQSQPPTLQTVASQCQQSNFSDSLGNPIASSDVSSMHTILGSLSQAGASHLLNSNASNPIISSSAMLTKQVTVDNHVPSAVSHCILPQVEQLGAQQSNVSELASLLPPFPGREYSSYHGSGDPQNNLLFGVSIDSSLMGQNGLPNLKNISSENESLSLPYAASNFTNNVGTDFPLNSDMTTSSCVDESGFLQssenvdqvnppTRTFVKvhksgsfgrsldiskFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVGYIKILSPLEVQQMGKGLSPVtsgpgqrlssnnNFDDYVSRqelrsssngvasmgsiny
MHADVETDEVYAQMTLQPLSPQEQKDVYLLPAELGAPNKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLaaaahaaaTNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYSSPFPLRLKRPWPSGLPSFHGMKDGDMSINSPLMWLQGGVGDQGIQSLNFQGYGVTPWMQPRLDASIPGLQPDVYQAMAAAALQEMRTVDssklasqsllqfqqsqNVSNGTASMIPRqmlqqsqaqnallqsfqENqasaqaqllqqqlqrqhsyneqrqqqqqvqqsqqlhqlsvqpqISNVISTLPHLAsssqsqppTLQTVASQCQQSNFSDSLGNPIASSDVSSMHTILGSLSQAGASHLLnsnasnpiisssaMLTKQVTVDNHVPSAVSHCILPQVEQLGAQQSNVSELASLLPPFPGREYSSYHGSGDPQNNLLFGVSIDSSLMGQNGLPNLKNISSENESLSLPYAASNFTNNVGTDFPLNSDMTTSSCVDESGFLQSSENVDQVNPPTRTFVKVHKSGSFGRSLDISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVGYIKILSPLEVQQMGKGLSPVTSGPGQRLSSNNNFDDYVSRQELRSSSNGVASMGSINY
**************************VYLLPA*********TNYFCKTLTA********************************ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATR*************SMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYSSPFPLRLKRPWPSGLPSFHG****DMSINSPLMWLQGGVGDQGIQSLNFQGYGVTPWMQPRLDASIPGLQPDVYQAMAA*************************************************************************************************************************************************************************************TKQVTVDNHVPSAVSHCILPQVE************************************LLFGVS******************************************************************************************************LARMFGLEGQL***QRSGWQLVFVDRENDVLLLGDDPWQEFVNNVGYIKILSPLEV************************************************
MHADVETDEVYAQMTLQPLS************************FCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAT********************LAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLT***************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************SGSFGRSLDISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVGYIKIL*****************************************************
********EVYAQMTLQPLSPQEQKDVYLLPAELGAPNKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYSSPFPLRLKRPWPSGLPSFHGMKDGDMSINSPLMWLQGGVGDQGIQSLNFQGYGVTPWMQPRLDASIPGLQPDVYQAMAAAALQEMRTVDSSKLASQSLLQFQQSQNVSNGTASMIPRQMLQQSQAQNALLQSFQEN**************************************SVQPQISNVISTLP***********************NFSDSLGNPIASSDVSSMHTILGSLSQAGASHLLNSNASNPIISSSAMLTKQVTVDNHVPSAVSHCILPQVEQLGAQQSNVSELASLLPPFPGREYSSYHGSGDPQNNLLFGVSIDSSLMGQNGLPNLKNISSENESLSLPYAASNFTNNVGTDFPLNSDMTTSSCVDESGFLQSSENVDQVNPPTRTFVKVHKSGSFGRSLDISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVGYIKILSPLEVQQ***************LSSNNNFDDYVSRQELRSSSNGVASMGSINY
*****ETDEVYAQMTLQPLS******VYLLPAE****NKQPTNYFCKTLTASD****GGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYSSPFPLRLK**************************************************************PDVYQAMA********************************************************************************************************************************************************************************************************************************************************DSSLMG***************************************************************PTRTFVKVHKSGSFGRSLDISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVGYIKILSPLEVQQM*********************************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MHADVETDEVYAQMTLQPLSPQEQKDVYLLPAELGAPNKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYSSPFPLRLKRPWPSGLPSFHGMKDGDMSINSPLMWLQGGVGDQGIQSLNFQGYGVTPWMQPRLDASIPGLQPDVYQAMAAAALQEMRTVDSSKLASQSLLQFQQSQNVSNGTASMIPRQMLQQSQAQNALLQSFQENQASAQAQLLQQQLQRQHSYNEQRQQQQQVQQSQQLHQLSVQPQISNVISTLPHLASSSQSQPPTLQTVASQCQQSNFSDSLGNPIASSDVSSMHTILGSLSQAGASHLLNSNASNPIISSSAMLTKQVTVDNHVPSAVSHCILPQVEQLGAQQSNVSELASLLPPFPGREYSSYHGSGDPQNNLLFGVSIDSSLMGQNGLPNLKNISSENESLSLPYAASNFTNNVGTDFPLNSDMTTSSCVDESGFLQSSENVDQVNPPTRTFVKVHKSGSFGRSLDISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVGYIKILSPLEVQQMGKGLSPVTSGPGQRLSSNNNFDDYVSRQELRSSSNGVASMGSINY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query815 2.2.26 [Sep-21-2011]
Q6H6V4908 Auxin response factor 6 O yes no 0.980 0.879 0.641 0.0
A2X1A1908 Auxin response factor 6 O N/A no 0.980 0.879 0.641 0.0
A2YG67917 Auxin response factor 17 N/A no 0.976 0.868 0.630 0.0
Q653U3917 Auxin response factor 17 no no 0.976 0.868 0.630 0.0
Q2QM84899 Auxin response factor 25 no no 0.971 0.880 0.583 0.0
Q9FGV1811 Auxin response factor 8 O yes no 0.862 0.866 0.556 0.0
Q9ZTX8935 Auxin response factor 6 O no no 0.484 0.422 0.852 0.0
Q0J951818 Auxin response factor 12 no no 0.429 0.427 0.812 1e-167
P93024902 Auxin response factor 5 O no no 0.879 0.794 0.411 1e-139
A3B9A0 1055 Auxin response factor 16 no no 0.477 0.368 0.602 1e-124
>sp|Q6H6V4|ARFF_ORYSJ Auxin response factor 6 OS=Oryza sativa subsp. japonica GN=ARF6 PE=1 SV=1 Back     alignment and function desciption
 Score =  968 bits (2503), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/834 (64%), Positives = 629/834 (75%), Gaps = 35/834 (4%)

Query: 1   MHADVETDEVYAQMTLQPLSPQEQKDVYLLPAELGAPNKQPTNYFCKTLTASDTSTHGGF 60
           MHAD ETDEVYAQMTLQPLSPQE KD +L PAELG  +KQPTNYFCKTLTASDTSTHGGF
Sbjct: 91  MHADAETDEVYAQMTLQPLSPQELKDPFL-PAELGTASKQPTNYFCKTLTASDTSTHGGF 149

Query: 61  SVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSA 120
           SVPRRAAEKVFPPLD++Q PPAQEL+A+DLH NEWKFRHIFRGQPKRHLLTTGWSVFVSA
Sbjct: 150 SVPRRAAEKVFPPLDFTQQPPAQELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSA 209

Query: 121 KRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSR 180
           KRLVAGDSVLFIWN+ NQLLLGIRRA RPQTVMPSSVLSSDSMHIGLLAAAAHAA+TNSR
Sbjct: 210 KRLVAGDSVLFIWNDSNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAASTNSR 269

Query: 181 FTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDL 240
           FTIFYNPRASPSEFVIPLAKYVKAVYHTR+SVGMRFRMLFETEESSVRRYMGTITGISDL
Sbjct: 270 FTIFYNPRASPSEFVIPLAKYVKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDL 329

Query: 241 DPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYSSPFPLRLKRPWPSGLP 300
           DPVRW NSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMY SPFPLRLKRPWP+GLP
Sbjct: 330 DPVRWMNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLP 389

Query: 301 SFHGMKDGDMSINSPLMWLQGGVGDQGIQSLNFQGYGVTPWMQPRLDASIPGLQPDVYQA 360
           S +G K+ D++  S LMWL+    + G QSLNF G G++PWMQPRLD+S+ GLQPD+YQ 
Sbjct: 390 SLYGGKEDDLA--SSLMWLRDS-QNTGFQSLNFGGLGMSPWMQPRLDSSLLGLQPDMYQT 446

Query: 361 MAAAALQEMRTVDSSKLASQSLLQFQQSQNVSNGTASMIPRQMLQQSQAQNALL--QSFQ 418
           +AAAA  +    +++K  S ++LQFQQ QN+  G +S++  Q+LQQ+Q Q   +  Q+  
Sbjct: 447 IAAAAALQ----NTTKQVSPAMLQFQQPQNIV-GRSSLLSSQILQQAQPQFQQMYHQNIN 501

Query: 419 EN--QASAQAQLLQQQLQRQHSYNE-------------QRQQQQQVQQSQQLHQLSVQPQ 463
            N  Q  +Q + LQQ LQ   S+NE               QQQ Q QQ QQ   LS    
Sbjct: 502 GNSIQGHSQPEYLQQPLQHCQSFNEQKPQLQPQQQQQESHQQQPQHQQMQQQKHLSNFQT 561

Query: 464 ISNVISTLPHLASSSQSQPPTLQTVASQCQQSNFSDSLGNPIASSDVSSMHTILGSLSQA 523
           + N +S    L+S+ QS P TLQTV+   QQ NF D+  + ++ S+VSSMH  L S    
Sbjct: 562 VPNALSVFSQLSSTPQSTPSTLQTVSPFSQQHNFPDTNISCLSPSNVSSMHDTLRSFPSE 621

Query: 524 GASHLLNSNASNPIISSSAMLTKQVTVDNHVPSAVSHCILPQVEQLGAQQSNVSELASLL 583
            AS L       P+  S    +K+V V++ + S   H I  Q+E      S++ +  S L
Sbjct: 622 AASDLPGVPRITPVPVSDPWSSKRVAVESTITSR-PHDISSQIENFDLTPSSIPQ-NSTL 679

Query: 584 PPFPGRE-YSSYHGSGDPQNNLLFGVSIDS-SLMGQNGLPNLKNISSENESLSLPYAASN 641
            P PGRE      GS DPQN+ LFGV+IDS SL+ Q+G+P+L N   EN S ++PY+ SN
Sbjct: 680 APLPGRECLVDQDGSSDPQNHFLFGVNIDSQSLLMQDGIPSLHN---ENSSSTIPYSTSN 736

Query: 642 FTNNVGTDFPLNSDMTTSSCVDESGFLQSSENVDQVNPPTRTFVKVHKSGSFGRSLDISK 701
           F +    D+PL+  +TT  C+DESG++  S+N DQV  P  TFVKV+KSG+ GR LDI++
Sbjct: 737 FLSPSQDDYPLSQTLTTPGCLDESGYVPCSDNADQVKRPHATFVKVYKSGTVGRLLDITR 796

Query: 702 FSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVGYIKI 761
           FSSY ELRSE+ R+FGLEGQLEDP RSGWQLVFVDRE+DVLL+GDDPWQEFVN+V  IKI
Sbjct: 797 FSSYHELRSEVGRLFGLEGQLEDPLRSGWQLVFVDREDDVLLVGDDPWQEFVNSVSCIKI 856

Query: 762 LSPLEVQQMGKGLSPVTSGPGQRLSSNNNFDDYVSRQELRSSSNGVASMGSINY 815
           LSP EVQQMGK    + S   +RL   N+ D+Y+SRQE RS S G+AS+GS+ +
Sbjct: 857 LSPQEVQQMGKPGIELFSTSARRL--GNSCDNYMSRQESRSLSTGIASVGSVEF 908
Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Oryza sativa subsp. japonica (taxid: 39947)
>sp|A2X1A1|ARFF_ORYSI Auxin response factor 6 OS=Oryza sativa subsp. indica GN=ARF6 PE=2 SV=1 Back     alignment and function description
>sp|A2YG67|ARFQ_ORYSI Auxin response factor 17 OS=Oryza sativa subsp. indica GN=ARF17 PE=2 SV=1 Back     alignment and function description
>sp|Q653U3|ARFQ_ORYSJ Auxin response factor 17 OS=Oryza sativa subsp. japonica GN=ARF17 PE=2 SV=1 Back     alignment and function description
>sp|Q2QM84|ARFY_ORYSJ Auxin response factor 25 OS=Oryza sativa subsp. japonica GN=ARF25 PE=2 SV=1 Back     alignment and function description
>sp|Q9FGV1|ARFH_ARATH Auxin response factor 8 OS=Arabidopsis thaliana GN=ARF8 PE=2 SV=2 Back     alignment and function description
>sp|Q9ZTX8|ARFF_ARATH Auxin response factor 6 OS=Arabidopsis thaliana GN=ARF6 PE=1 SV=2 Back     alignment and function description
>sp|Q0J951|ARFL_ORYSJ Auxin response factor 12 OS=Oryza sativa subsp. japonica GN=ARF12 PE=2 SV=1 Back     alignment and function description
>sp|P93024|ARFE_ARATH Auxin response factor 5 OS=Arabidopsis thaliana GN=ARF5 PE=1 SV=3 Back     alignment and function description
>sp|A3B9A0|ARFP_ORYSJ Auxin response factor 16 OS=Oryza sativa subsp. japonica GN=ARF16 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query815
118486652907 unknown [Populus trichocarpa] 0.997 0.896 0.796 0.0
356501413896 PREDICTED: auxin response factor 6-like 0.990 0.900 0.789 0.0
356554039866 PREDICTED: auxin response factor 6-like 0.950 0.894 0.800 0.0
359485334891 PREDICTED: auxin response factor 6-like 0.974 0.891 0.766 0.0
302143499836 unnamed protein product [Vitis vinifera] 0.865 0.843 0.719 0.0
225443952908 PREDICTED: auxin response factor 6-like 0.997 0.895 0.723 0.0
449466121899 PREDICTED: auxin response factor 6-like 0.987 0.895 0.692 0.0
449515293884 PREDICTED: LOW QUALITY PROTEIN: auxin re 0.987 0.910 0.691 0.0
296278602889 ARF1 [Nicotiana benthamiana] 0.974 0.893 0.698 0.0
302398563895 ARF domain class transcription factor [M 0.990 0.901 0.692 0.0
>gi|118486652|gb|ABK95163.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1301 bits (3366), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 655/822 (79%), Positives = 723/822 (87%), Gaps = 9/822 (1%)

Query: 1   MHADVETDEVYAQMTLQPLSPQEQKDVYLLPAELGAPNKQPTNYFCKTLTASDTSTHGGF 60
           MHADVETDEVYAQMTLQPLS  +QKD YLLPAELG  +KQPTNYFCKTLTASDTSTHGGF
Sbjct: 88  MHADVETDEVYAQMTLQPLSQDDQKDAYLLPAELGTASKQPTNYFCKTLTASDTSTHGGF 147

Query: 61  SVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSA 120
           SVPRRAAEKVFP LDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSA
Sbjct: 148 SVPRRAAEKVFPTLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSA 207

Query: 121 KRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSR 180
           KRLVAGDSVLFIWNEKNQLLLGIRRA RPQT MPSSVLSSDSMHIGLLAAAAHAAATNSR
Sbjct: 208 KRLVAGDSVLFIWNEKNQLLLGIRRANRPQTFMPSSVLSSDSMHIGLLAAAAHAAATNSR 267

Query: 181 FTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDL 240
           FTIFYNPRASPSEFVIPL KY+KAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDL
Sbjct: 268 FTIFYNPRASPSEFVIPLVKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDL 327

Query: 241 DPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYSSPFPLRLKRPWPSGLP 300
           DPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMY S FP+RLKRPWPSGLP
Sbjct: 328 DPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSAFPMRLKRPWPSGLP 387

Query: 301 SFHGMKDGDMSINSPLMWLQGGVGDQGIQSLNFQGYGVTPWMQPRLDASIPGLQPDVYQA 360
           SFHG++DGD++INSP+MWLQGGVGD G+QSLNFQ +GV PW+QPR D S+P LQP++YQ 
Sbjct: 388 SFHGLQDGDLNINSPMMWLQGGVGDLGVQSLNFQSFGVAPWIQPRFDTSMPALQPEMYQT 447

Query: 361 MAAAALQEMRTVDSSKLASQSLLQFQQSQNVSNGTASMIPRQMLQQSQAQNALLQSFQEN 420
           MAAAALQEMRTV+SSKLASQS LQFQQSQNVSNG A++I RQMLQQS  Q+ALLQ+FQEN
Sbjct: 448 MAAAALQEMRTVESSKLASQSHLQFQQSQNVSNGPAALIQRQMLQQSNLQHALLQNFQEN 507

Query: 421 QASAQAQLLQQQLQRQHSYN-----EQRQQQQQVQQSQQLHQLSVQPQISNVISTLPHLA 475
           QAS QAQ LQQ LQ ++ Y      + + Q QQVQQ +QL++LS   QI NVIS LPHL 
Sbjct: 508 QASTQAQFLQQHLQHRNQYTGQQLQQHQPQLQQVQQPKQLNELSAPQQIPNVISALPHLT 567

Query: 476 SSSQSQPPTLQTVASQCQQSNFSDSLGNPIASSDVSSMHTILGSLSQAGASHLLNSNASN 535
           S + SQ P+LQ ++SQCQQ  FS+ LGN IA+SDVSSMH+++GSLSQ G SHLLNSN SN
Sbjct: 568 SVAPSQSPSLQPISSQCQQQAFSEPLGNSIAASDVSSMHSVIGSLSQDGGSHLLNSNGSN 627

Query: 536 PIISSSAMLTKQVTVDNHVPSAVSHCILPQVEQLGAQQSNVSELASLLPPFPGREYSSYH 595
           P+I S A+L+K+  +D  + S  +HC LPQVEQL   QS VS+LA+LL PF GREYS+Y 
Sbjct: 628 PVI-SPALLSKRAAIDPQLSSGAAHCALPQVEQLRTTQSTVSDLATLLAPFSGREYSTYQ 686

Query: 596 GSGDPQNNLLFGVSIDSS-LMGQNGLPNLKNISSENESLSLPYAASNFTNNVGTDFPLNS 654
           G+ DPQNNLLFGV+IDSS  M Q+G+PNL+NI +EN+ LS+P+AAS FT+  G+D PLNS
Sbjct: 687 GANDPQNNLLFGVNIDSSTFMLQHGIPNLRNIGTENDPLSMPFAASTFTSATGSDIPLNS 746

Query: 655 DMTTSSCVDESGFLQSSENVDQVNPPTRTFVKVHKSGSFGRSLDISKFSSYDELRSELAR 714
           DMT SSCVDESGFLQSSENVDQVNP TRTFVKVHKSGS+GRSLDISKFSSYDELRSELAR
Sbjct: 747 DMTASSCVDESGFLQSSENVDQVNPSTRTFVKVHKSGSYGRSLDISKFSSYDELRSELAR 806

Query: 715 MFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVGYIKILSPLEVQQMGK-G 773
           +F LEG LEDPQRSGWQLVF DRENDVLLLGDDPWQEFVNNV YIKILSPLEVQQMGK G
Sbjct: 807 LFCLEGLLEDPQRSGWQLVFGDRENDVLLLGDDPWQEFVNNVWYIKILSPLEVQQMGKEG 866

Query: 774 LSPVTSGPGQRLSSNNNFDDYVSRQELRSSSNGVASMGSINY 815
           LSP  S P Q+L SN+N D +++ Q  R+SSNG+ASMGS++Y
Sbjct: 867 LSPAASVPCQKL-SNSNSDGHMNTQGFRNSSNGIASMGSLDY 907

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356501413|ref|XP_003519519.1| PREDICTED: auxin response factor 6-like [Glycine max] Back     alignment and taxonomy information
>gi|356554039|ref|XP_003545357.1| PREDICTED: auxin response factor 6-like [Glycine max] Back     alignment and taxonomy information
>gi|359485334|ref|XP_002282830.2| PREDICTED: auxin response factor 6-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|302143499|emb|CBI22060.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225443952|ref|XP_002279808.1| PREDICTED: auxin response factor 6-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449466121|ref|XP_004150775.1| PREDICTED: auxin response factor 6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449515293|ref|XP_004164684.1| PREDICTED: LOW QUALITY PROTEIN: auxin response factor 6-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|296278602|gb|ADH04265.1| ARF1 [Nicotiana benthamiana] Back     alignment and taxonomy information
>gi|302398563|gb|ADL36576.1| ARF domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query815
TAIR|locus:2204237935 ARF6 "auxin response factor 6" 0.449 0.391 0.864 5.5e-259
TAIR|locus:2152642811 ARF8 "auxin response factor 8" 0.447 0.450 0.770 1.8e-196
TAIR|locus:2202205 1086 ARF19 "auxin response factor 1 0.438 0.328 0.590 1.1e-146
TAIR|locus:2035454902 MP "MONOPTEROS" [Arabidopsis t 0.361 0.327 0.613 2.4e-132
TAIR|locus:2174013859 ARF2 "auxin response factor 2" 0.365 0.346 0.533 3.1e-106
TAIR|locus:2175098788 ARF4 "auxin response factor 4" 0.360 0.373 0.535 2.2e-103
TAIR|locus:2025991665 ARF1 "auxin response factor 1" 0.363 0.445 0.541 4.2e-98
TAIR|locus:2039124622 ARF11 "auxin response factor 1 0.343 0.450 0.5 8.7e-91
TAIR|locus:2076765602 ARF18 "auxin response factor 1 0.384 0.519 0.490 3.4e-90
TAIR|locus:2138096638 ARF9 "auxin response factor 9" 0.352 0.449 0.489 3.5e-88
TAIR|locus:2204237 ARF6 "auxin response factor 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1704 (604.9 bits), Expect = 5.5e-259, Sum P(2) = 5.5e-259
 Identities = 325/376 (86%), Positives = 341/376 (90%)

Query:     1 MHADVETDEVYAQMTLQPLSPQEQKDVYLLPAELGAPNKQPTNYFCKTLTASDTSTHGGF 60
             MHADVETDEVYAQMTLQPL+ QEQKD YL PAELG P++QPTNYFCKTLTASDTSTHGGF
Sbjct:    86 MHADVETDEVYAQMTLQPLNAQEQKDPYL-PAELGVPSRQPTNYFCKTLTASDTSTHGGF 144

Query:    61 SVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSA 120
             SVPRRAAEKVFPPLDYSQ PPAQEL+ARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSA
Sbjct:   145 SVPRRAAEKVFPPLDYSQQPPAQELMARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSA 204

Query:   121 KRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLXXXXXXXXTNSR 180
             KRLVAGDSVLFIWN+KNQLLLGIRRA RPQTVMPSSVLSSDSMH+GLL        TNSR
Sbjct:   205 KRLVAGDSVLFIWNDKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSR 264

Query:   181 FTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDL 240
             FTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGI DL
Sbjct:   265 FTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGICDL 324

Query:   241 DPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYSSPFPLRLKRPWPSGLP 300
             DP RW NSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMY SPFPLRLKRPWP GLP
Sbjct:   325 DPTRWANSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLP 384

Query:   301 SFHGMKDGDM--SINSPLMWLQGGVGDQGIQSLNFQGYGVTPWMQPRLDAS-IPGLQPDV 357
             SFHG+K+ DM  S++SPLMW      D+G+QSLNFQG GV PWMQPRLD S + G+Q DV
Sbjct:   385 SFHGLKEDDMGMSMSSPLMW------DRGLQSLNFQGMGVNPWMQPRLDTSGLLGMQNDV 438

Query:   358 YQAMAAAALQEMRTVD 373
             YQAMAAAALQ+MR +D
Sbjct:   439 YQAMAAAALQDMRGID 454
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS
GO:0009725 "response to hormone stimulus" evidence=IEA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0009733 "response to auxin stimulus" evidence=IMP
GO:0009908 "flower development" evidence=IGI
GO:0005515 "protein binding" evidence=IPI
GO:0009855 "determination of bilateral symmetry" evidence=RCA
GO:0009886 "post-embryonic morphogenesis" evidence=RCA
GO:0009887 "organ morphogenesis" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0010014 "meristem initiation" evidence=RCA
GO:0010051 "xylem and phloem pattern formation" evidence=RCA
GO:0010073 "meristem maintenance" evidence=RCA
GO:0048439 "flower morphogenesis" evidence=RCA
GO:0048481 "ovule development" evidence=RCA
GO:0048507 "meristem development" evidence=RCA
GO:0048519 "negative regulation of biological process" evidence=RCA
TAIR|locus:2152642 ARF8 "auxin response factor 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202205 ARF19 "auxin response factor 19" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035454 MP "MONOPTEROS" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174013 ARF2 "auxin response factor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175098 ARF4 "auxin response factor 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025991 ARF1 "auxin response factor 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039124 ARF11 "auxin response factor 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076765 ARF18 "auxin response factor 18" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2138096 ARF9 "auxin response factor 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A2YG67ARFQ_ORYSINo assigned EC number0.63000.97660.8680N/Ano
Q9FGV1ARFH_ARATHNo assigned EC number0.55640.86250.8668yesno
Q6H6V4ARFF_ORYSJNo assigned EC number0.64140.98030.8799yesno
A2X1A1ARFF_ORYSINo assigned EC number0.64140.98030.8799N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00018838001
SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (830 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query815
pfam0650783 pfam06507, Auxin_resp, Auxin response factor 1e-46
smart0101996 smart01019, B3, B3 DNA binding domain 9e-27
pfam0236297 pfam02362, B3, B3 DNA binding domain 9e-27
pfam02309188 pfam02309, AUX_IAA, AUX/IAA family 1e-23
cd1001798 cd10017, B3_DNA, Plant-specific B3-DNA binding dom 3e-22
pfam11498476 pfam11498, Activator_LAG-3, Transcriptional activa 7e-04
cd10016142 cd10016, EcoRII_N, N-terminal domain of type IIE r 7e-04
pfam09606 768 pfam09606, Med15, ARC105 or Med15 subunit of Media 8e-04
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 0.001
PRK102461047 PRK10246, PRK10246, exonuclease subunit SbcC; Prov 0.002
PRK00286438 PRK00286, xseA, exodeoxyribonuclease VII large sub 0.004
PRK00286438 PRK00286, xseA, exodeoxyribonuclease VII large sub 0.004
pfam0056484 pfam00564, PB1, PB1 domain 0.004
>gnl|CDD|191545 pfam06507, Auxin_resp, Auxin response factor Back     alignment and domain information 
 Score =  160 bits (407), Expect = 1e-46
 Identities = 57/84 (67%), Positives = 71/84 (84%), Gaps = 1/84 (1%)

Query: 171 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRY 230
           AAHAA+T S F +FYNPRAS SEFV+P AKY+KA+ +   SVGMRF+M FETE+SS RR+
Sbjct: 1   AAHAASTGSPFHVFYNPRASTSEFVVPYAKYLKAMNN-PFSVGMRFKMRFETEDSSERRF 59

Query: 231 MGTITGISDLDPVRWPNSHWRSVK 254
            GTI+G+SDLDP+RWPNS WRS++
Sbjct: 60  SGTISGVSDLDPIRWPNSKWRSLQ 83

A conserved region of auxin-responsive transcription factors. Length = 83
>gnl|CDD|214977 smart01019, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|216995 pfam02362, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family Back     alignment and domain information
>gnl|CDD|197383 cd10017, B3_DNA, Plant-specific B3-DNA binding domain Back     alignment and domain information
>gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 Back     alignment and domain information
>gnl|CDD|197382 cd10016, EcoRII_N, N-terminal domain of type IIE restriction endonuclease EcoRII and similar proteins Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional Back     alignment and domain information
>gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed Back     alignment and domain information
>gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed Back     alignment and domain information
>gnl|CDD|215996 pfam00564, PB1, PB1 domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 815
PF0650783 Auxin_resp: Auxin response factor; InterPro: IPR01 100.0
PF02309215 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A 100.0
PF02362100 B3: B3 DNA binding domain; InterPro: IPR003340 Two 99.72
KOG06441113 consensus Uncharacterized conserved protein, conta 99.41
PF09217156 EcoRII-N: Restriction endonuclease EcoRII, N-termi 98.19
PF03754114 DUF313: Domain of unknown function (DUF313) ; Inte 97.76
PF0056484 PB1: PB1 domain; InterPro: IPR000270 The Phox and 97.1
smart0066681 PB1 PB1 domain. Phox and Bem1p domain, present in 96.14
cd0599281 PB1 The PB1 domain is a modular domain mediating s 96.12
cd0640782 PB1_NLP A PB1 domain is present in NIN like protei 95.75
cd0639681 PB1_NBR1 The PB1 domain is an essential part of NB 95.7
cd0640986 PB1_MUG70 The MUG70 protein is a product of the me 95.25
cd0639891 PB1_Joka2 The PB1 domain is present in the Nicotia 94.91
cd0640380 PB1_Par6 The PB1 domain is an essential part of Pa 92.53
cd0640483 PB1_aPKC PB1 domain is an essential modular domain 91.66
cd0640181 PB1_TFG The PB1 domain found in TFG protein, an on 90.47
cd0640287 PB1_p62 The PB1 domain is an essential part of p62 90.32
cd0639782 PB1_UP1 Uncharacterized protein 1. The PB1 domain 88.19
cd0639992 PB1_P40 The PB1 domain is essential part of the p4 83.76
cd0640886 PB1_NoxR The PB1 domain is present in the Epichloe 82.96
>PF06507 Auxin_resp: Auxin response factor; InterPro: IPR010525 This pattern represents a conserved region of auxin-responsive transcription factors Back     alignment and domain information 
Probab=100.00  E-value=9.4e-35  Score=257.38  Aligned_cols=83  Identities=66%  Similarity=1.100  Sum_probs=81.2

Q ss_pred             HHHHHHhCCcEEEEEecCCCCCcceechHHHHHHHhcCCCcccCEEEEeeeccccccceeeeEEEEeecCCCCCCCCCCc
Q 003506          171 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHW  250 (815)
Q Consensus       171 Aa~aaa~~~~FtV~Y~PRas~sEFVVp~~ky~kAv~~~~ws~GmRFrM~fEtEdss~rr~~GTI~gi~~~Dp~rWP~S~W  250 (815)
                      |+|||+++++|+|+||||++++|||||++||++|+. ++|++||||||.||+||+++++|+|||+||+++||.+||+|+|
T Consensus         1 A~~aa~~~~~F~V~Y~PRa~~sEFVV~~~k~~~al~-~~~~~GmRfkM~fE~eds~~~~~~GtI~~v~~~dp~~w~~S~W   79 (83)
T PF06507_consen    1 AAHAAATGSPFEVFYYPRASPSEFVVPASKYDKALN-HPWSVGMRFKMRFETEDSSERRWQGTIVGVSDLDPIRWPGSKW   79 (83)
T ss_pred             ChhHhhcCCeEEEEECCCCCCcceEEEHHHHHHHhc-CCCCCCcEEEEEeccCCCccceeeeEEeEeeccCCCCCCCCCc
Confidence            689999999999999999999999999999999997 8999999999999999999999999999999999999999999


Q ss_pred             eeeE
Q 003506          251 RSVK  254 (815)
Q Consensus       251 R~Lq  254 (815)
                      ||||
T Consensus        80 R~Lq   83 (83)
T PF06507_consen   80 RMLQ   83 (83)
T ss_pred             ccCc
Confidence            9997

The plant hormone auxin (indole-3-acetic acid) can regulate the gene expression of several families, including Aux/IAA, GH3 and SAUR families. Two related families of proteins, Aux/IAA proteins (IPR003311 from INTERPRO) and the auxin response factors (ARF), are key regulators of auxin-modulated gene expression []. There are multiple ARF proteins, some of which activate, while others repress transcription. ARF proteins bind to auxin-responsive cis-acting promoter elements (AuxREs) using an N-terminal DNA-binding domain. It is thought that Aux/IAA proteins activate transcription by modifying ARF activity through the C-terminal protein-protein interaction domains (IPR011525 from INTERPRO) found in both Aux/IAA and ARF proteins. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0009725 response to hormone stimulus, 0005634 nucleus
>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression [] Back     alignment and domain information
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species Back     alignment and domain information
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information
>PF09217 EcoRII-N: Restriction endonuclease EcoRII, N-terminal; InterPro: IPR023372 There are four classes of restriction endonucleases: types I, II,III and IV Back     alignment and domain information
>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function Back     alignment and domain information
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins Back     alignment and domain information
>smart00666 PB1 PB1 domain Back     alignment and domain information
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity Back     alignment and domain information
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium) Back     alignment and domain information
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62 Back     alignment and domain information
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain Back     alignment and domain information
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein Back     alignment and domain information
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells Back     alignment and domain information
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells Back     alignment and domain information
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK Back     alignment and domain information
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover Back     alignment and domain information
>cd06397 PB1_UP1 Uncharacterized protein 1 Back     alignment and domain information
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis Back     alignment and domain information
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query815
1wid_A130 Solution Structure Of The B3 Dna-Binding Domain Of 6e-07
>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1 Length = 130 Back     alignment and structure 
Iteration: 1

 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 43/87 (49%)
Query: 45  FCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQ 104
           F K +T SD        +P+  AEK FP    + +     L   D++   W+FR+ +   
Sbjct: 14  FEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNS 73
Query: 105 PKRHLLTTGWSVFVSAKRLVAGDSVLF 131
            + ++LT GWS FV  K L AGD V F
Sbjct: 74  SQSYVLTKGWSRFVKEKNLRAGDVVSF 100

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query815
1wid_A130 DNA-binding protein RAV1; DNA-binding domain, stru 2e-43
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Length = 130 Back     alignment and structure
 Score =  152 bits (384), Expect = 2e-43
 Identities = 37/126 (29%), Positives = 57/126 (45%)

Query: 35  GAPNKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNE 94
           G+  +     F K +T SD        +P+  AEK FP    + +     L   D++   
Sbjct: 4   GSSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKV 63

Query: 95  WKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMP 154
           W+FR+ +    + ++LT GWS FV  K L AGD V F  +      L I   +R  + + 
Sbjct: 64  WRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSDLD 123

Query: 155 SSVLSS 160
           +S  SS
Sbjct: 124 ASGPSS 129
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 815
d1wida_117 b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cre 2e-36
d1na6a1175 b.142.1.1 (A:4-178) Restriction endonuclease EcoRI 2e-24
d1yela1102 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabid 2e-12
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 117 Back     information, alignment and structure

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  130 bits (329), Expect = 2e-36
 Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 4/119 (3%)

Query: 39  KQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFR 98
           +     F K +T SD        +P+  AEK FP    + +     L   D++   W+FR
Sbjct: 1   RSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFR 60

Query: 99  HIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIW--NEKNQLLLGIRRATRPQTVMPS 155
           + +    + ++LT GWS FV  K L AGD V F     +  QL +G +   R  + + +
Sbjct: 61  YSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKS--RSGSDLDA 117
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 175 Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 102 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query815
d1wida_117 DNA-binding protein RAV1 {Thale cress (Arabidopsis 99.94
d1na6a1175 Restriction endonuclease EcoRII, N-terminal domain 99.85
d1yela1102 At1g16640 {Thale cress (Arabidopsis thaliana) [Tax 99.45
d2bkfa185 Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum 95.84
d1ip9a_85 Bud emergence mediator Bemp1 {Baker's yeast (Sacch 91.57
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.94  E-value=1.3e-26  Score=188.33  Aligned_cols=109  Identities=30%  Similarity=0.490  Sum_probs=102.3

Q ss_pred             CCEEEEEECCCCCCCCCCCEEEECCHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCCHHHHCC
Q ss_conf             85039994373669989940350101633099999999999629999967999179799980899612560450112202
Q 003506           41 PTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSA  120 (815)
Q Consensus        41 ~~~~F~K~LT~SDV~~~GrlsIPk~~Ae~~FPpLd~~~~~p~q~L~v~Dl~G~~W~FR~iyrg~pkrhlLTtGWs~FVk~  120 (815)
                      ...+|.|+||+|||++++||+||+++|++|||+++...+.+++++.++|.+|++|.|+|++|++.++|+|++||..||++
T Consensus         3 ~~~iF~K~Lt~sDv~~~~rL~iP~~~~~~~lp~~~~~~~~~~~~~~~~d~~g~~W~~~~~~~~~~~~~~l~~GW~~Fv~~   82 (117)
T d1wida_           3 AEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKE   82 (117)
T ss_dssp             CEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHHHH
T ss_pred             CCEEEEEEECCHHCCCCCEEEECHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEEECCHHHHHHH
T ss_conf             76479999111200898889977899997389543456777079999959999999999998899834774577998887


Q ss_pred             CCCCCCCEEEEEEC--CCCCEEEEEEECCCC
Q ss_conf             58877988999972--598199999945899
Q 003506          121 KRLVAGDSVLFIWN--EKNQLLLGIRRATRP  149 (815)
Q Consensus       121 KkL~aGDsVvF~R~--e~G~L~VGIRRa~r~  149 (815)
                      ++|++||+|+|+++  ++++++|++||+...
T Consensus        83 ~~Lk~GD~~~F~~~~~~~~~~~i~~r~~~~~  113 (117)
T d1wida_          83 KNLRAGDVVSFSRSNGQDQQLYIGWKSRSGS  113 (117)
T ss_dssp             TTCCTTCEEEEEECCSSSCCEEEEEECCCSC
T ss_pred             CCCCCCCEEEEEEEECCCCEEEEEEEECCCC
T ss_conf             4999799999999818998899999999999
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure