BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003508
(814 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UQU|A Chain A, Trehalose-6-Phosphate From E. Coli Bound With Udp-Glucose.
pdb|1UQU|B Chain B, Trehalose-6-Phosphate From E. Coli Bound With Udp-Glucose.
pdb|1UQT|A Chain A, Trehalose-6-Phosphate From E. Coli Bound With Udp-2-Fluoro
Glucose.
pdb|1UQT|B Chain B, Trehalose-6-Phosphate From E. Coli Bound With Udp-2-Fluoro
Glucose
Length = 482
Score = 239 bits (609), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 149/441 (33%), Positives = 223/441 (50%), Gaps = 20/441 (4%)
Query: 15 WIGWAGVNVPDEIGQKALTKALAEKRCIPVFLDEDIVHQYYNGYCNNILWPLFHYLGLPQ 74
W GW+G ++ K + K L E + +YYN + N +LWP FHY
Sbjct: 39 WFGWSGETGNEDQPLKKVKKG--NITWASFNLSEQDLDEYYNQFSNAVLWPAFHY----- 91
Query: 75 EDRLATTRSFQSQFAAYIKANQMFADVVNKHYKDGDVVWCHDYHLMFLPKCLKEYNSDMK 134
RL + + + Y++ N + AD + +D D++W HDYHL+ L++ + +
Sbjct: 92 --RLDLVQFQRPAWDGYLRVNALLADKLLPLLQDDDIIWIHDYHLLPFAHELRKRGVNNR 149
Query: 135 VGWFLHTPFPSSEIHRTLPXXXXXXXXXXXXXXXGFHTYDYARHFV---SACTRILGFEG 191
+G+FLH PFP+ EI LP GF T + F+ S TR+
Sbjct: 150 IGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSA 209
Query: 192 TPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDM 251
G+ R +PIGI+ + + P+ + +L+ + + V+RLD
Sbjct: 210 KSHTA--WGKAFRTEVYPIGIEPKEIAKQ-AAGPLPPKLAQLKAELKNVQNIFSVERLDY 266
Query: 252 IKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFG 311
KG+P++ LA+E LE+ GK+ QIA +R DV YQ + Q+ GRING++G
Sbjct: 267 SKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYG 326
Query: 312 TLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQD-LKKGVLILS 370
L P+++L++ D L ++ +DV LVT LRDGMNLV+ E+VA QD GVL+LS
Sbjct: 327 QLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLS 386
Query: 371 EFAGAAQSLGAGAILVNPWNITEVANAIARALNMSPEEREKRHWHNFTHVTTHTAQEWAE 430
+FAGAA L A++VNP++ EVA A+ RAL MS ER RH + + W E
Sbjct: 387 QFAGAANEL-TSALIVNPYDRDEVAAALDRALTMSLAERISRHAEMLDVIVKNDINHWQE 445
Query: 431 TFVSELNDTV---VEAQLRIK 448
F+S+L V E+Q R K
Sbjct: 446 CFISDLKQIVPRSAESQQRDK 466
>pdb|2WTX|A Chain A, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|B Chain B, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|C Chain C, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|D Chain D, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
Length = 474
Score = 239 bits (609), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 149/441 (33%), Positives = 223/441 (50%), Gaps = 20/441 (4%)
Query: 15 WIGWAGVNVPDEIGQKALTKALAEKRCIPVFLDEDIVHQYYNGYCNNILWPLFHYLGLPQ 74
W GW+G ++ K + K L E + +YYN + N +LWP FHY
Sbjct: 39 WFGWSGETGNEDQPLKKVKKG--NITWASFNLSEQDLDEYYNQFSNAVLWPAFHY----- 91
Query: 75 EDRLATTRSFQSQFAAYIKANQMFADVVNKHYKDGDVVWCHDYHLMFLPKCLKEYNSDMK 134
RL + + + Y++ N + AD + +D D++W HDYHL+ L++ + +
Sbjct: 92 --RLDLVQFQRPAWDGYLRVNALLADKLLPLLQDDDIIWIHDYHLLPFAHELRKRGVNNR 149
Query: 135 VGWFLHTPFPSSEIHRTLPXXXXXXXXXXXXXXXGFHTYDYARHFV---SACTRILGFEG 191
+G+FLH PFP+ EI LP GF T + F+ S TR+
Sbjct: 150 IGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSA 209
Query: 192 TPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDM 251
G+ R +PIGI+ + + P+ + +L+ + + V+RLD
Sbjct: 210 KSHTA--WGKAFRTEVYPIGIEPKEIAKQ-AAGPLPPKLAQLKAELKNVQNIFSVERLDY 266
Query: 252 IKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFG 311
KG+P++ LA+E LE+ GK+ QIA +R DV YQ + Q+ GRING++G
Sbjct: 267 SKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYG 326
Query: 312 TLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQD-LKKGVLILS 370
L P+++L++ D L ++ +DV LVT LRDGMNLV+ E+VA QD GVL+LS
Sbjct: 327 QLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLS 386
Query: 371 EFAGAAQSLGAGAILVNPWNITEVANAIARALNMSPEEREKRHWHNFTHVTTHTAQEWAE 430
+FAGAA L A++VNP++ EVA A+ RAL MS ER RH + + W E
Sbjct: 387 QFAGAANEL-TSALIVNPYDRDEVAAALDRALTMSLAERISRHAEMLDVIVKNDINHWQE 445
Query: 431 TFVSELNDTV---VEAQLRIK 448
F+S+L V E+Q R K
Sbjct: 446 CFISDLKQIVPRSAESQQRDK 466
>pdb|1GZ5|A Chain A, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|B Chain B, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|C Chain C, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|D Chain D, Trehalose-6-Phosphate Synthase. Otsa
Length = 456
Score = 233 bits (593), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 143/430 (33%), Positives = 216/430 (50%), Gaps = 17/430 (3%)
Query: 15 WIGWAGVNVPDEIGQKALTKALAEKRCIPVFLDEDIVHQYYNGYCNNILWPLFHYLGLPQ 74
W GW+G ++ K + K L E + +YYN + N +LWP FHY
Sbjct: 38 WFGWSGETGNEDQPLKKVKKG--NITWASFNLSEQDLDEYYNQFSNAVLWPAFHY----- 90
Query: 75 EDRLATTRSFQSQFAAYIKANQMFADVVNKHYKDGDVVWCHDYHLMFLPKCLKEYNSDMK 134
RL + + + Y++ N + AD + +D D++W HDYHL+ L++ + +
Sbjct: 91 --RLDLVQFQRPAWDGYLRVNALLADKLLPLLQDDDIIWIHDYHLLPFAHELRKRGVNNR 148
Query: 135 VGWFLHTPFPSSEIHRTLPXXXXXXXXXXXXXXXGFHTYDYARHFV---SACTRILGFEG 191
+G+FLH PFP+ EI LP GF T + F+ S TR+
Sbjct: 149 IGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSA 208
Query: 192 TPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDM 251
G+ R +PIGI+ + + P+ + +L+ + + V+RLD
Sbjct: 209 KSHTA--WGKAFRTEVYPIGIEPKEIAKQ-AAGPLPPKLAQLKAELKNVQNIFSVERLDY 265
Query: 252 IKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFG 311
KG+P++ LA+E LE+ GK+ QIA +R DV YQ + Q+ GRING++G
Sbjct: 266 SKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYG 325
Query: 312 TLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQD-LKKGVLILS 370
L P+++L++ D L ++ +DV LVT LRDG NLV+ E+VA QD GVL+LS
Sbjct: 326 QLGWTPLYYLNQHFDRKLLXKIFRYSDVGLVTPLRDGXNLVAKEYVAAQDPANPGVLVLS 385
Query: 371 EFAGAAQSLGAGAILVNPWNITEVANAIARALNMSPEEREKRHWHNFTHVTTHTAQEWAE 430
+FAGAA L A++VNP++ EVA A+ RAL S ER RH + + W E
Sbjct: 386 QFAGAANEL-TSALIVNPYDRDEVAAALDRALTXSLAERISRHAEXLDVIVKNDINHWQE 444
Query: 431 TFVSELNDTV 440
F+S+L V
Sbjct: 445 CFISDLKQIV 454
>pdb|3T5T|A Chain A, Vall From Streptomyces Hygroscopicus In Apo Form
pdb|3T5T|B Chain B, Vall From Streptomyces Hygroscopicus In Apo Form
Length = 496
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 87/355 (24%), Positives = 145/355 (40%), Gaps = 22/355 (6%)
Query: 47 DEDIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYIKANQMFADVVNKHY 106
D + N N++W +Y G + + + + +A + + + FAD + K
Sbjct: 87 DPAVFRNVQNFMTANLMWAANNY-GWDRWTQPSFGSDAREGWADFGRFTRDFADAILKSS 145
Query: 107 -KDGDVVW-CHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPXXXXXXXX--X 162
+ D V+ HDY L+ +P L+E D + F+H P+PS++ R LP
Sbjct: 146 AQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIPWPSADYWRILPKEIRTGILHGM 205
Query: 163 XXXXXXGFHTYDYARHFVSACTRILG---FEGTPEGVEDQGRLTRVAAFPIGIDSERFIR 219
GF + R+F+ + +L + VE +G TR+ P+G
Sbjct: 206 LPATTIGFFADRWCRNFLESVADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSP----- 260
Query: 220 ALEINPVQVHIKELQETFA-GRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVL 278
L ++ + E E +A G ++++ R D IK + + AF L K +
Sbjct: 261 -LTLDGRNPQLPEGIEEWADGHRLVVHSGRTDPIKNAERAVRAF--VLAARGGGLEKTRM 317
Query: 279 LQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTD 338
L P R VP +V V N G+ T +D D A + D
Sbjct: 318 LVRMNPNRLYVPANADYVHRVETAVAEANAELGSDTV----RIDNDNDVNHTIACFRRAD 373
Query: 339 VALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSLGAGAILVNPWNITE 393
+ + S DG NL ++E + + +ILSE GAA+ LG VNP+++ E
Sbjct: 374 LLIFNSTVDGQNLSTFEAPLVNE-RDADVILSETCGAAEVLGEYCRSVNPFDLVE 427
>pdb|4F96|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
pdb|4F96|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
pdb|4F97|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Validoxylamine A 7'-Phosphate
pdb|4F97|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Validoxylamine A 7'-Phosphate
pdb|4F9F|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|C Chain C, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|D Chain D, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|E Chain E, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|F Chain F, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|3VDM|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase
Which Catalyzes Non-Glycosidic C-N Coupling In
Validamycin A Biosynthesis
pdb|3VDM|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase
Which Catalyzes Non-Glycosidic C-N Coupling In
Validamycin A Biosynthesis
pdb|3VDN|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
Length = 497
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 87/355 (24%), Positives = 145/355 (40%), Gaps = 22/355 (6%)
Query: 47 DEDIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYIKANQMFADVVNKHY 106
D + N N++W +Y G + + + + +A + + + FAD + K
Sbjct: 88 DPAVFRNVQNFMTANLMWAANNY-GWDRWTQPSFGSDAREGWADFGRFTRDFADAILKSS 146
Query: 107 -KDGDVVW-CHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPXXXXXXXX--X 162
+ D V+ HDY L+ +P L+E D + F+H P+PS++ R LP
Sbjct: 147 AQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIPWPSADYWRILPKEIRTGILHGM 206
Query: 163 XXXXXXGFHTYDYARHFVSACTRILG---FEGTPEGVEDQGRLTRVAAFPIGIDSERFIR 219
GF + R+F+ + +L + VE +G TR+ P+G
Sbjct: 207 LPATTIGFFADRWCRNFLESVADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSP----- 261
Query: 220 ALEINPVQVHIKELQETFA-GRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVL 278
L ++ + E E +A G ++++ R D IK + + AF L K +
Sbjct: 262 -LTLDGRNPQLPEGIEEWADGHRLVVHSGRTDPIKNAERAVRAF--VLAARGGGLEKTRM 318
Query: 279 LQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTD 338
L P R VP +V V N G+ T +D D A + D
Sbjct: 319 LVRMNPNRLYVPANADYVHRVETAVAEANAELGSDTV----RIDNDNDVNHTIACFRRAD 374
Query: 339 VALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSLGAGAILVNPWNITE 393
+ + S DG NL ++E + + +ILSE GAA+ LG VNP+++ E
Sbjct: 375 LLIFNSTVDGQNLSTFEAPLVNE-RDADVILSETCGAAEVLGEYCRSVNPFDLVE 428
>pdb|3T7D|A Chain A, Vall From Streptomyces Hygroscopicus In Complex With
Trehalose
pdb|3T7D|B Chain B, Vall From Streptomyces Hygroscopicus In Complex With
Trehalose
Length = 497
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 94/378 (24%), Positives = 152/378 (40%), Gaps = 25/378 (6%)
Query: 27 IGQKALTKALAEKRCIPVFL---DEDIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRS 83
+ +T L R I V L D + N N+ W +Y G + + +
Sbjct: 65 LNPDGVTXELHSGREILVRLIRHDPAVFRNVQNFXTANLXWAANNY-GWDRWTQPSFGSD 123
Query: 84 FQSQFAAYIKANQMFADVVNKHY-KDGDVVW-CHDYHLMFLPKCLKEYNSDMKVGWFLHT 141
+ +A + + + FAD + K + D V+ HDY L+ +P L+E D + F+H
Sbjct: 124 AREGWADFGRFTRDFADAILKSSAQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHI 183
Query: 142 PFPSSEIHRTLPXXXXXXXXXXX--XXXXGFHTYDYARHFVSACTRILG---FEGTPEGV 196
P+PS++ R LP GF + R+F+ + +L + V
Sbjct: 184 PWPSADYWRILPKEIRTGILHGXLPATTIGFFADRWCRNFLESVADLLPDARIDREAXTV 243
Query: 197 EDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFA-GRKVMLGVDRLDMIKGI 255
E +G TR+ P+G L ++ + E E +A G ++++ R D IK
Sbjct: 244 EWRGHRTRLRTXPLGYSP------LTLDGRNPQLPEGIEEWADGHRLVVHSGRTDPIKNA 297
Query: 256 PQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTA 315
+ + AF L K L P R VP +V V N G+ T
Sbjct: 298 ERAVRAF--VLAARGGGLEKTRXLVRXNPNRLYVPANADYVHRVETAVAEANAELGSDTV 355
Query: 316 VPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGA 375
+D D A + D+ + S DG NL ++E + + +ILSE GA
Sbjct: 356 ----RIDNDNDVNHTIACFRRADLLIFNSTVDGQNLSTFEAPLVNE-RDADVILSETCGA 410
Query: 376 AQSLGAGAILVNPWNITE 393
A+ LG VNP+++ E
Sbjct: 411 AEVLGEYCRSVNPFDLVE 428
>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
pdb|2CDU|B Chain B, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
Length = 452
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 17/76 (22%)
Query: 599 YKYADVEFGRIQARDMLQHLWTGPISNASVEVVQGSKSVEVRAVGVTKGAAIDRILAEIV 658
YKY D EF I A+D H V +V GSK V D I+ + +
Sbjct: 186 YKYFDKEFTDILAKDYEAH---------GVNLVLGSKVAAFEEVD-------DEIITKTL 229
Query: 659 HSKKMKTAIDYVLCIG 674
K++K+ I +LCIG
Sbjct: 230 DGKEIKSDI-AILCIG 244
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,584,915
Number of Sequences: 62578
Number of extensions: 1035212
Number of successful extensions: 2235
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2217
Number of HSP's gapped (non-prelim): 12
length of query: 814
length of database: 14,973,337
effective HSP length: 107
effective length of query: 707
effective length of database: 8,277,491
effective search space: 5852186137
effective search space used: 5852186137
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)